BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254780853|ref|YP_003065266.1| NADH dehydrogenase subunit B
[Candidatus Liberibacter asiaticus str. psy62]
         (185 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done


Results from round 1


>gi|254780853|ref|YP_003065266.1| NADH dehydrogenase subunit B [Candidatus Liberibacter asiaticus
           str. psy62]
 gi|254040530|gb|ACT57326.1| NADH dehydrogenase subunit B [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 185

 Score =  385 bits (989), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 185/185 (100%), Positives = 185/185 (100%)

Query: 1   MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTF 60
           MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTF
Sbjct: 1   MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTF 60

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP
Sbjct: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV
Sbjct: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180

Query: 181 GNVKC 185
           GNVKC
Sbjct: 181 GNVKC 185


>gi|315122725|ref|YP_004063214.1| NADH dehydrogenase subunit B [Candidatus Liberibacter solanacearum
           CLso-ZC1]
 gi|313496127|gb|ADR52726.1| NADH dehydrogenase subunit B [Candidatus Liberibacter solanacearum
           CLso-ZC1]
          Length = 185

 Score =  336 bits (862), Expect = 8e-91,   Method: Compositional matrix adjust.
 Identities = 158/184 (85%), Positives = 168/184 (91%)

Query: 1   MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTF 60
           MGLT  ++KI+   SS SLEK   DF    +E+ +KGFLV  +DQLVTWARTGSLMWMTF
Sbjct: 1   MGLTKFDRKIVVDHSSFSLEKAGMDFPSTDTELMNKGFLVAPIDQLVTWARTGSLMWMTF 60

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP
Sbjct: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD+YVPGCPPTAEALIYGILLLQKKIRR+
Sbjct: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALIYGILLLQKKIRRI 180

Query: 181 GNVK 184
           GN+K
Sbjct: 181 GNIK 184


>gi|300023456|ref|YP_003756067.1| NADH-quinone oxidoreductase subunit beta [Hyphomicrobium
           denitrificans ATCC 51888]
 gi|299525277|gb|ADJ23746.1| NADH-quinone oxidoreductase, B subunit [Hyphomicrobium
           denitrificans ATCC 51888]
          Length = 198

 Score =  308 bits (788), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 141/174 (81%), Positives = 158/174 (90%)

Query: 11  ISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMM 70
           +SG ++  +   D  F+ IS+E+  KGFLVT+VD L+ WARTGSLMWMTFGLACCAVEMM
Sbjct: 24  VSGAATSIIRPDDQFFTGISNELADKGFLVTTVDDLINWARTGSLMWMTFGLACCAVEMM 83

Query: 71  QASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCA 130
           QASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCA
Sbjct: 84  QASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCA 143

Query: 131 NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           NGGGYYHYSY+VVRGCDR+VPVD+YVPGCPPTAEAL+YGILLLQ+KIRR G ++
Sbjct: 144 NGGGYYHYSYAVVRGCDRVVPVDVYVPGCPPTAEALVYGILLLQRKIRRTGTIE 197


>gi|327188488|gb|EGE55702.1| NADH dehydrogenase subunit B [Rhizobium etli CNPAF512]
          Length = 201

 Score =  306 bits (784), Expect = 9e-82,   Method: Compositional matrix adjust.
 Identities = 145/193 (75%), Positives = 164/193 (84%), Gaps = 9/193 (4%)

Query: 1   MGLTTV-NQKIISGQSSCSLEKV--------DADFSRISSEITHKGFLVTSVDQLVTWAR 51
           MG+T V NQ +++ Q    ++          DA F  I++E+  KGFLVTS D+L+ WAR
Sbjct: 8   MGVTPVSNQPLVAQQPKGIIDPSTGKPIGSNDAFFGEINNELADKGFLVTSTDELINWAR 67

Query: 52  TGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALR 111
           TGSLMWMTFGLACCAVEMMQ SMPRYD+ERFGFAPRASPRQSDVMIVAGTLTNKMA ALR
Sbjct: 68  TGSLMWMTFGLACCAVEMMQLSMPRYDVERFGFAPRASPRQSDVMIVAGTLTNKMAPALR 127

Query: 112 RVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171
           +VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR+VP+DIYVPGCPPTAEAL+YG+L
Sbjct: 128 KVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRVVPIDIYVPGCPPTAEALLYGVL 187

Query: 172 LLQKKIRRVGNVK 184
           LLQKKIRR G ++
Sbjct: 188 LLQKKIRRTGTIE 200


>gi|86357237|ref|YP_469129.1| NADH dehydrogenase subunit B [Rhizobium etli CFN 42]
 gi|218673424|ref|ZP_03523093.1| NADH dehydrogenase subunit B [Rhizobium etli GR56]
 gi|123512314|sp|Q2K9T4|NUOB1_RHIEC RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName:
           Full=NADH dehydrogenase I subunit B 1; AltName:
           Full=NDH-1 subunit B 1
 gi|86281339|gb|ABC90402.1| NADH-ubiquinone oxidoreductase chain B protein [Rhizobium etli CFN
           42]
          Length = 194

 Score =  306 bits (783), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 145/193 (75%), Positives = 164/193 (84%), Gaps = 9/193 (4%)

Query: 1   MGLTTV-NQKIISGQSSCSLEKV--------DADFSRISSEITHKGFLVTSVDQLVTWAR 51
           MG+T V NQ +++ Q    ++          DA F  I++E+  KGFLVTS D+L+ WAR
Sbjct: 1   MGVTPVSNQPLVAQQPKGIIDPSTGKPIGSNDAFFGEINNELADKGFLVTSTDELINWAR 60

Query: 52  TGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALR 111
           TGSLMWMTFGLACCAVEMMQ SMPRYD+ERFGFAPRASPRQSDVMIVAGTLTNKMA ALR
Sbjct: 61  TGSLMWMTFGLACCAVEMMQLSMPRYDVERFGFAPRASPRQSDVMIVAGTLTNKMAPALR 120

Query: 112 RVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171
           +VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR+VP+DIYVPGCPPTAEAL+YG+L
Sbjct: 121 KVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRVVPIDIYVPGCPPTAEALLYGVL 180

Query: 172 LLQKKIRRVGNVK 184
           LLQKKIRR G ++
Sbjct: 181 LLQKKIRRTGTIE 193


>gi|153009751|ref|YP_001370966.1| NADH dehydrogenase subunit B [Ochrobactrum anthropi ATCC 49188]
 gi|218527999|sp|A6X1N3|NUOB_OCHA4 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|151561639|gb|ABS15137.1| NADH-quinone oxidoreductase, B subunit [Ochrobactrum anthropi ATCC
           49188]
          Length = 193

 Score =  306 bits (783), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 145/192 (75%), Positives = 162/192 (84%), Gaps = 8/192 (4%)

Query: 1   MGLTTVNQKIISGQSSCSLE--------KVDADFSRISSEITHKGFLVTSVDQLVTWART 52
           MGLTT N  +++ Q    L+          DA F+ ++SE++ KGF+VTS D L+TWART
Sbjct: 1   MGLTTANTTLVAPQPKGILDPRTGKPVGSDDAFFNDLNSELSDKGFIVTSADALITWART 60

Query: 53  GSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRR 112
           GSLMWMTFGLACCAVEMM  SMPRYD ERFG APRASPRQSDVMIVAGTLTNKMA ALR+
Sbjct: 61  GSLMWMTFGLACCAVEMMHISMPRYDAERFGIAPRASPRQSDVMIVAGTLTNKMAPALRK 120

Query: 113 VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILL 172
           VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR+VPVDIYVPGCPPTAEAL+YGIL+
Sbjct: 121 VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRVVPVDIYVPGCPPTAEALLYGILM 180

Query: 173 LQKKIRRVGNVK 184
           LQKKIRR G ++
Sbjct: 181 LQKKIRRTGTIE 192


>gi|150396112|ref|YP_001326579.1| NADH dehydrogenase subunit B [Sinorhizobium medicae WSM419]
 gi|238065217|sp|A6U7W4|NUOB_SINMW RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|150027627|gb|ABR59744.1| NADH-quinone oxidoreductase, B subunit [Sinorhizobium medicae
           WSM419]
          Length = 192

 Score =  306 bits (783), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 140/162 (86%), Positives = 151/162 (93%)

Query: 23  DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82
           DA F  I++E+  KGFLVTS D+L+TWARTGSLMWMTFGLACCAVEMMQ SMPRYD ERF
Sbjct: 30  DAFFGEINNELADKGFLVTSTDELITWARTGSLMWMTFGLACCAVEMMQMSMPRYDAERF 89

Query: 83  GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142
           GFAPRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSV
Sbjct: 90  GFAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSV 149

Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           VRGCDR+VPVDIYVPGCPPTAEAL+YG+LLLQKKIRR G ++
Sbjct: 150 VRGCDRVVPVDIYVPGCPPTAEALLYGVLLLQKKIRRTGTIE 191


>gi|190891286|ref|YP_001977828.1| NADH-ubiquinone oxidoreductase, chain B [Rhizobium etli CIAT 652]
 gi|238065013|sp|B3PVZ8|NUOB1_RHIE6 RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName:
           Full=NADH dehydrogenase I subunit B 1; AltName:
           Full=NDH-1 subunit B 1
 gi|190696565|gb|ACE90650.1| NADH-ubiquinone oxidoreductase protein, chain B [Rhizobium etli
           CIAT 652]
          Length = 194

 Score =  305 bits (781), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 144/193 (74%), Positives = 162/193 (83%), Gaps = 9/193 (4%)

Query: 1   MGLTTVNQK---------IISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWAR 51
           MG+T V+ +         II   +   +   DA F  I++E+  KGFLVTS D+L+ WAR
Sbjct: 1   MGVTPVSNEPLVAQQPKGIIDPSTGKPIGSNDAFFGEINNELADKGFLVTSTDELINWAR 60

Query: 52  TGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALR 111
           TGSLMWMTFGLACCAVEMMQ SMPRYD+ERFGFAPRASPRQSDVMIVAGTLTNKMA ALR
Sbjct: 61  TGSLMWMTFGLACCAVEMMQLSMPRYDVERFGFAPRASPRQSDVMIVAGTLTNKMAPALR 120

Query: 112 RVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171
           +VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR+VP+DIYVPGCPPTAEAL+YG+L
Sbjct: 121 KVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRVVPIDIYVPGCPPTAEALLYGVL 180

Query: 172 LLQKKIRRVGNVK 184
           LLQKKIRR G ++
Sbjct: 181 LLQKKIRRTGTIE 193


>gi|209548863|ref|YP_002280780.1| NADH dehydrogenase subunit B [Rhizobium leguminosarum bv. trifolii
           WSM2304]
 gi|238065201|sp|B5ZYL3|NUOB_RHILW RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|209534619|gb|ACI54554.1| NADH-quinone oxidoreductase, B subunit [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 194

 Score =  305 bits (781), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 141/177 (79%), Positives = 156/177 (88%)

Query: 8   QKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAV 67
           + II   +   +   DA F  I++E+  KGFLVTS D+L+ WARTGSLMWMTFGLACCAV
Sbjct: 17  KGIIDPSTGKPIGSNDAFFGEINNELADKGFLVTSTDELINWARTGSLMWMTFGLACCAV 76

Query: 68  EMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMG 127
           EMMQ SMPRYD+ERFGFAPRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMG
Sbjct: 77  EMMQLSMPRYDVERFGFAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMG 136

Query: 128 SCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           SCANGGGYYHYSYSVVRGCDRIVP+DIYVPGCPPTAEAL+YG+LLLQKKIRR G ++
Sbjct: 137 SCANGGGYYHYSYSVVRGCDRIVPIDIYVPGCPPTAEALLYGVLLLQKKIRRTGTIE 193


>gi|118590038|ref|ZP_01547442.1| NADH dehydrogenase subunit B [Stappia aggregata IAM 12614]
 gi|118437535|gb|EAV44172.1| NADH dehydrogenase subunit B [Stappia aggregata IAM 12614]
          Length = 192

 Score =  305 bits (780), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 145/191 (75%), Positives = 159/191 (83%), Gaps = 7/191 (3%)

Query: 1   MGLTTVN-------QKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTG 53
           MGLTT         Q II   +   +   DA F  +++E+  KGFLVTS D L+ WARTG
Sbjct: 1   MGLTTTEPLVAPQPQGIIDPNTGKPVGADDAFFLEVNNELADKGFLVTSTDNLIQWARTG 60

Query: 54  SLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRV 113
           SLMWMTFGLACCAVEMMQ SMPRYD ERFGFAPRASPRQSDVMIVAGTLTNKMA ALR+V
Sbjct: 61  SLMWMTFGLACCAVEMMQMSMPRYDAERFGFAPRASPRQSDVMIVAGTLTNKMAPALRKV 120

Query: 114 YDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLL 173
           YDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR+VPVDIYVPGCPPTAEAL+YG+L+L
Sbjct: 121 YDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRVVPVDIYVPGCPPTAEALLYGVLML 180

Query: 174 QKKIRRVGNVK 184
           QKKIRR G ++
Sbjct: 181 QKKIRRTGTIE 191


>gi|239831687|ref|ZP_04680016.1| NADH-quinone oxidoreductase, B subunit [Ochrobactrum intermedium
           LMG 3301]
 gi|239823954|gb|EEQ95522.1| NADH-quinone oxidoreductase, B subunit [Ochrobactrum intermedium
           LMG 3301]
          Length = 193

 Score =  305 bits (780), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 144/192 (75%), Positives = 162/192 (84%), Gaps = 8/192 (4%)

Query: 1   MGLTTVNQKIISGQSSCSLE--------KVDADFSRISSEITHKGFLVTSVDQLVTWART 52
           MGLT+ N  +++ Q    L+          DA F+ ++SE++ KGF+VTS D L+TWART
Sbjct: 1   MGLTSANTTLVAPQPKGILDPRTGKPVGSDDAFFNDLNSELSDKGFIVTSADALITWART 60

Query: 53  GSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRR 112
           GSLMWMTFGLACCAVEMM  SMPRYD ERFG APRASPRQSDVMIVAGTLTNKMA ALR+
Sbjct: 61  GSLMWMTFGLACCAVEMMHISMPRYDAERFGIAPRASPRQSDVMIVAGTLTNKMAPALRK 120

Query: 113 VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILL 172
           VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR+VPVDIYVPGCPPTAEAL+YGIL+
Sbjct: 121 VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRVVPVDIYVPGCPPTAEALLYGILM 180

Query: 173 LQKKIRRVGNVK 184
           LQKKIRR G ++
Sbjct: 181 LQKKIRRTGTIE 192


>gi|227821618|ref|YP_002825588.1| NADH dehydrogenase subunit B [Sinorhizobium fredii NGR234]
 gi|227340617|gb|ACP24835.1| NADH dehydrogenase I chain B [Sinorhizobium fredii NGR234]
          Length = 192

 Score =  304 bits (779), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 141/177 (79%), Positives = 155/177 (87%)

Query: 8   QKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAV 67
           + II   +   +   DA F  I++E+  KGFLVTS D+L+ WARTGSLMWMTFGLACCAV
Sbjct: 15  KGIIDPATGKPIGSNDAFFGEINNELADKGFLVTSTDELINWARTGSLMWMTFGLACCAV 74

Query: 68  EMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMG 127
           EMMQ SMPRYD ERFGFAPRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMG
Sbjct: 75  EMMQMSMPRYDAERFGFAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMG 134

Query: 128 SCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           SCANGGGYYHYSYSVVRGCDR+VPVDIYVPGCPPTAEAL+YG+LLLQKKIRR G ++
Sbjct: 135 SCANGGGYYHYSYSVVRGCDRVVPVDIYVPGCPPTAEALLYGVLLLQKKIRRTGTIE 191


>gi|15965018|ref|NP_385371.1| NADH dehydrogenase subunit B [Sinorhizobium meliloti 1021]
 gi|307301090|ref|ZP_07580859.1| NADH-quinone oxidoreductase, B subunit [Sinorhizobium meliloti
           BL225C]
 gi|307317824|ref|ZP_07597262.1| NADH-quinone oxidoreductase, B subunit [Sinorhizobium meliloti
           AK83]
 gi|7387950|sp|O68853|NUOB1_RHIME RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName:
           Full=NADH dehydrogenase I subunit B 1; AltName:
           Full=NDH-1 subunit B 1
 gi|5650735|emb|CAB51621.1| nuoB1 [Sinorhizobium meliloti]
 gi|15074197|emb|CAC45844.1| NADH-ubiqionone oxidoreductase subunit K transmembrane protein
           [Sinorhizobium meliloti 1021]
 gi|306896586|gb|EFN27334.1| NADH-quinone oxidoreductase, B subunit [Sinorhizobium meliloti
           AK83]
 gi|306904045|gb|EFN34631.1| NADH-quinone oxidoreductase, B subunit [Sinorhizobium meliloti
           BL225C]
          Length = 192

 Score =  304 bits (778), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 139/162 (85%), Positives = 150/162 (92%)

Query: 23  DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82
           DA F  I++E+  KGFLVTS D+L+ WARTGSLMWMTFGLACCAVEMMQ SMPRYD ERF
Sbjct: 30  DAFFGEINNELADKGFLVTSTDELINWARTGSLMWMTFGLACCAVEMMQMSMPRYDAERF 89

Query: 83  GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142
           GFAPRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSV
Sbjct: 90  GFAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSV 149

Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           VRGCDR+VPVDIYVPGCPPTAEAL+YG+LLLQKKIRR G ++
Sbjct: 150 VRGCDRVVPVDIYVPGCPPTAEALLYGVLLLQKKIRRTGTIE 191


>gi|217979050|ref|YP_002363197.1| NADH-quinone oxidoreductase, B subunit [Methylocella silvestris
           BL2]
 gi|238065173|sp|B8EIL8|NUOB_METSB RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|217504426|gb|ACK51835.1| NADH-quinone oxidoreductase, B subunit [Methylocella silvestris
           BL2]
          Length = 187

 Score =  304 bits (778), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 144/186 (77%), Positives = 160/186 (86%), Gaps = 2/186 (1%)

Query: 1   MGLTTVNQK--IISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWM 58
           MGLT   Q+  +I+  +   L   D  F  I+ ++  KGFLVTS D+L+ WARTGSLMWM
Sbjct: 1   MGLTPAPQEGLVINPATDRPLAANDPYFLSINDKLADKGFLVTSTDELINWARTGSLMWM 60

Query: 59  TFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMP 118
           TFGLACCAVEMMQASMPRYD+ERFGFAPR SPRQSDVMIVAGTLTNKMA ALR+VYDQMP
Sbjct: 61  TFGLACCAVEMMQASMPRYDVERFGFAPRGSPRQSDVMIVAGTLTNKMAPALRKVYDQMP 120

Query: 119 EPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           EPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP+AEAL+YGILLLQ+KIR
Sbjct: 121 EPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPSAEALLYGILLLQRKIR 180

Query: 179 RVGNVK 184
           R G ++
Sbjct: 181 RTGTIE 186


>gi|222085576|ref|YP_002544106.1| NADH-ubiquinone oxidoreductase chain B protein [Agrobacterium
           radiobacter K84]
 gi|238065070|sp|B9JD43|NUOB_AGRRK RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|221723024|gb|ACM26180.1| NADH-ubiquinone oxidoreductase chain B protein [Agrobacterium
           radiobacter K84]
          Length = 193

 Score =  303 bits (777), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 141/192 (73%), Positives = 160/192 (83%), Gaps = 8/192 (4%)

Query: 1   MGLTTVNQKIISGQSSCSLEKV--------DADFSRISSEITHKGFLVTSVDQLVTWART 52
           MG+   N  +++ Q    ++          D  F  I++E+  KGFLVTS D+L+ WART
Sbjct: 1   MGVAQSNTTLVAPQPKGIIDPATGKPVGSNDPFFGEINNELADKGFLVTSTDELINWART 60

Query: 53  GSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRR 112
           GSLMWMTFGLACCAVEMMQ SMPRYD+ERFGFAPRASPRQSDVMIVAGTLTNKMA ALR+
Sbjct: 61  GSLMWMTFGLACCAVEMMQVSMPRYDVERFGFAPRASPRQSDVMIVAGTLTNKMAPALRK 120

Query: 113 VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILL 172
           VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP+DIY+PGCPPTAEAL+YG+LL
Sbjct: 121 VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPIDIYIPGCPPTAEALLYGVLL 180

Query: 173 LQKKIRRVGNVK 184
           LQKKIRR G ++
Sbjct: 181 LQKKIRRTGTIE 192


>gi|116251467|ref|YP_767305.1| NADH dehydrogenase subunit B [Rhizobium leguminosarum bv. viciae
           3841]
 gi|238065200|sp|Q1MIL4|NUOB_RHIL3 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|115256115|emb|CAK07196.1| putative NADH-quinone oxidoreductase subunit B [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 194

 Score =  303 bits (776), Expect = 7e-81,   Method: Compositional matrix adjust.
 Identities = 140/177 (79%), Positives = 155/177 (87%)

Query: 8   QKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAV 67
           + II   +   +   D  F  I++E+  KGFLVTS D+L+ WARTGSLMWMTFGLACCAV
Sbjct: 17  KGIIDPSTGKPIGSNDPFFGEINNELADKGFLVTSTDELINWARTGSLMWMTFGLACCAV 76

Query: 68  EMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMG 127
           EMMQ SMPRYD+ERFGFAPRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMG
Sbjct: 77  EMMQLSMPRYDVERFGFAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMG 136

Query: 128 SCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           SCANGGGYYHYSYSVVRGCDRIVP+DIYVPGCPPTAEAL+YG+LLLQKKIRR G ++
Sbjct: 137 SCANGGGYYHYSYSVVRGCDRIVPIDIYVPGCPPTAEALLYGVLLLQKKIRRTGTIE 193


>gi|218457950|ref|ZP_03498041.1| NADH dehydrogenase subunit B [Rhizobium etli Kim 5]
          Length = 185

 Score =  303 bits (776), Expect = 8e-81,   Method: Compositional matrix adjust.
 Identities = 140/175 (80%), Positives = 155/175 (88%)

Query: 7   NQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCA 66
           ++ II   +   +   DA F  I++E+  KGFLVTS D+L+ WARTGSLMWMTFGLACCA
Sbjct: 11  SKGIIDPSTGKPIGSNDAFFGEINNELADKGFLVTSTDELINWARTGSLMWMTFGLACCA 70

Query: 67  VEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISM 126
           VEMMQ SMPRYD+ERFGFAPRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISM
Sbjct: 71  VEMMQLSMPRYDVERFGFAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISM 130

Query: 127 GSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
           GSCANGGGYYHYSYSVVRGCDR+VP+DIYVPGCPPTAEAL+YG+LLLQKKIRR G
Sbjct: 131 GSCANGGGYYHYSYSVVRGCDRVVPIDIYVPGCPPTAEALLYGVLLLQKKIRRTG 185


>gi|260545498|ref|ZP_05821239.1| NADH-quinone oxidoreductase subunit C/D [Brucella abortus NCTC
           8038]
 gi|297248157|ref|ZP_06931875.1| NADH dehydrogenase I subunit B [Brucella abortus bv. 5 str. B3196]
 gi|260096905|gb|EEW80780.1| NADH-quinone oxidoreductase subunit C/D [Brucella abortus NCTC
           8038]
 gi|297175326|gb|EFH34673.1| NADH dehydrogenase I subunit B [Brucella abortus bv. 5 str. B3196]
          Length = 200

 Score =  303 bits (776), Expect = 8e-81,   Method: Compositional matrix adjust.
 Identities = 144/192 (75%), Positives = 160/192 (83%), Gaps = 8/192 (4%)

Query: 1   MGLTTVNQKIISGQSSCSLE--------KVDADFSRISSEITHKGFLVTSVDQLVTWART 52
           MGLT  N  +++ Q    L+          DA F+ ++ E++ KGF+VTS D L+TWART
Sbjct: 8   MGLTGTNTTLVAPQPKGILDPRTGKTVGSDDAFFNDLNGELSDKGFIVTSADALITWART 67

Query: 53  GSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRR 112
           GSLMWMTFGLACCAVEMM  SMPRYD ERFG APRASPRQSDVMIVAGTLTNKMA ALR+
Sbjct: 68  GSLMWMTFGLACCAVEMMHISMPRYDAERFGIAPRASPRQSDVMIVAGTLTNKMAPALRK 127

Query: 113 VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILL 172
           VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR+VPVDIYVPGCPPTAEAL+YGILL
Sbjct: 128 VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRVVPVDIYVPGCPPTAEALLYGILL 187

Query: 173 LQKKIRRVGNVK 184
           LQKKIRR G ++
Sbjct: 188 LQKKIRRTGTIE 199


>gi|241204087|ref|YP_002975183.1| NADH dehydrogenase subunit B [Rhizobium leguminosarum bv. trifolii
           WSM1325]
 gi|240857977|gb|ACS55644.1| NADH-quinone oxidoreductase, B subunit [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 194

 Score =  303 bits (775), Expect = 8e-81,   Method: Compositional matrix adjust.
 Identities = 144/193 (74%), Positives = 162/193 (83%), Gaps = 9/193 (4%)

Query: 1   MGLTTV-NQKIISGQSSCSLEKV--------DADFSRISSEITHKGFLVTSVDQLVTWAR 51
           MG+  V NQ +++ Q    ++          D  F  I++E+  KGFLVTS D+L+ WAR
Sbjct: 1   MGVAPVSNQPLVAQQPKGIIDPSTGKPVGSNDPFFGEINNELADKGFLVTSTDELINWAR 60

Query: 52  TGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALR 111
           TGSLMWMTFGLACCAVEMMQ SMPRYD+ERFGFAPRASPRQSDVMIVAGTLTNKMA ALR
Sbjct: 61  TGSLMWMTFGLACCAVEMMQLSMPRYDVERFGFAPRASPRQSDVMIVAGTLTNKMAPALR 120

Query: 112 RVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171
           +VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP+DIYVPGCPPTAEAL+YG+L
Sbjct: 121 KVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPIDIYVPGCPPTAEALLYGVL 180

Query: 172 LLQKKIRRVGNVK 184
           LLQKKIRR G ++
Sbjct: 181 LLQKKIRRTGTIE 193


>gi|17987440|ref|NP_540074.1| NADH dehydrogenase subunit B [Brucella melitensis bv. 1 str. 16M]
 gi|260563836|ref|ZP_05834322.1| NADH-quinone oxidoreductase subunit C/D [Brucella melitensis bv. 1
           str. 16M]
 gi|260566633|ref|ZP_05837103.1| NADH-quinone oxidoreductase subunit C/D [Brucella suis bv. 4 str.
           40]
 gi|17983133|gb|AAL52338.1| NADH-quinone oxidoreductase chain b [Brucella melitensis bv. 1 str.
           16M]
 gi|260153852|gb|EEW88944.1| NADH-quinone oxidoreductase subunit C/D [Brucella melitensis bv. 1
           str. 16M]
 gi|260156151|gb|EEW91231.1| NADH-quinone oxidoreductase subunit C/D [Brucella suis bv. 4 str.
           40]
          Length = 200

 Score =  303 bits (775), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 144/192 (75%), Positives = 160/192 (83%), Gaps = 8/192 (4%)

Query: 1   MGLTTVNQKIISGQSSCSLE--------KVDADFSRISSEITHKGFLVTSVDQLVTWART 52
           MGLT  N  +++ Q    L+          DA F+ ++ E++ KGF+VTS D L+TWART
Sbjct: 8   MGLTGTNTTLVAPQPKGILDPRTGKPVGSDDAFFNDLNGELSDKGFIVTSADALITWART 67

Query: 53  GSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRR 112
           GSLMWMTFGLACCAVEMM  SMPRYD ERFG APRASPRQSDVMIVAGTLTNKMA ALR+
Sbjct: 68  GSLMWMTFGLACCAVEMMHISMPRYDAERFGIAPRASPRQSDVMIVAGTLTNKMAPALRK 127

Query: 113 VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILL 172
           VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR+VPVDIYVPGCPPTAEAL+YGILL
Sbjct: 128 VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRVVPVDIYVPGCPPTAEALLYGILL 187

Query: 173 LQKKIRRVGNVK 184
           LQKKIRR G ++
Sbjct: 188 LQKKIRRTGTIE 199


>gi|298291846|ref|YP_003693785.1| NADH-quinone oxidoreductase subunit beta [Starkeya novella DSM 506]
 gi|296928357|gb|ADH89166.1| NADH-quinone oxidoreductase, B subunit [Starkeya novella DSM 506]
          Length = 192

 Score =  302 bits (774), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 138/175 (78%), Positives = 154/175 (88%)

Query: 10  IISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEM 69
           II   +   +   D  F  +++E+  KGFLVT+ D+L+ WARTGSLMWMTFGLACCAVEM
Sbjct: 17  IIDPNTGKPVGTTDPFFVEVNAELADKGFLVTATDELINWARTGSLMWMTFGLACCAVEM 76

Query: 70  MQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSC 129
           MQ SMPRYD+ERFGFAPRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSC
Sbjct: 77  MQTSMPRYDVERFGFAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSC 136

Query: 130 ANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           ANGGGYYHYSYSVVRGCDRIVPVDIY+PGCPPTAEAL+YG+LLLQKKIRR G ++
Sbjct: 137 ANGGGYYHYSYSVVRGCDRIVPVDIYIPGCPPTAEALLYGVLLLQKKIRRTGTIE 191


>gi|62289752|ref|YP_221545.1| NADH dehydrogenase subunit B [Brucella abortus bv. 1 str. 9-941]
 gi|82699680|ref|YP_414254.1| NADH dehydrogenase subunit B [Brucella melitensis biovar Abortus
           2308]
 gi|189023997|ref|YP_001934765.1| NADH dehydrogenase subunit B [Brucella abortus S19]
 gi|237815239|ref|ZP_04594237.1| NADH-quinone oxidoreductase, B subunit [Brucella abortus str. 2308
           A]
 gi|254689059|ref|ZP_05152313.1| NADH dehydrogenase subunit B [Brucella abortus bv. 6 str. 870]
 gi|254697193|ref|ZP_05159021.1| NADH dehydrogenase subunit B [Brucella abortus bv. 2 str. 86/8/59]
 gi|254730089|ref|ZP_05188667.1| NADH dehydrogenase subunit B [Brucella abortus bv. 4 str. 292]
 gi|256257308|ref|ZP_05462844.1| NADH dehydrogenase subunit B [Brucella abortus bv. 9 str. C68]
 gi|260754557|ref|ZP_05866905.1| NADH-quinone oxidoreductase [Brucella abortus bv. 6 str. 870]
 gi|260757778|ref|ZP_05870126.1| NADH-quinone oxidoreductase [Brucella abortus bv. 4 str. 292]
 gi|260761603|ref|ZP_05873946.1| NADH-quinone oxidoreductase [Brucella abortus bv. 2 str. 86/8/59]
 gi|260883584|ref|ZP_05895198.1| NADH-quinone oxidoreductase subunit B [Brucella abortus bv. 9 str.
           C68]
 gi|75496975|sp|Q57DV0|NUOB_BRUAB RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|123546615|sp|Q2YNC8|NUOB_BRUA2 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|218527975|sp|B2S544|NUOB_BRUA1 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|62195884|gb|AAX74184.1| NuoB, NADH dehydrogenase I, B subunit [Brucella abortus bv. 1 str.
           9-941]
 gi|82615781|emb|CAJ10779.1| NADH ubiquinone oxidoreductase domain, 20 kDa subunit:NADH
           dehydrogenase (ubiquinone), 20 kDa subunit [Brucella
           melitensis biovar Abortus 2308]
 gi|189019569|gb|ACD72291.1| NADH dehydrogenase beta subunit [Brucella abortus S19]
 gi|237790076|gb|EEP64286.1| NADH-quinone oxidoreductase, B subunit [Brucella abortus str. 2308
           A]
 gi|260668096|gb|EEX55036.1| NADH-quinone oxidoreductase [Brucella abortus bv. 4 str. 292]
 gi|260672035|gb|EEX58856.1| NADH-quinone oxidoreductase [Brucella abortus bv. 2 str. 86/8/59]
 gi|260674665|gb|EEX61486.1| NADH-quinone oxidoreductase [Brucella abortus bv. 6 str. 870]
 gi|260873112|gb|EEX80181.1| NADH-quinone oxidoreductase subunit B [Brucella abortus bv. 9 str.
           C68]
          Length = 193

 Score =  302 bits (774), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 144/192 (75%), Positives = 160/192 (83%), Gaps = 8/192 (4%)

Query: 1   MGLTTVNQKIISGQSSCSLE--------KVDADFSRISSEITHKGFLVTSVDQLVTWART 52
           MGLT  N  +++ Q    L+          DA F+ ++ E++ KGF+VTS D L+TWART
Sbjct: 1   MGLTGTNTTLVAPQPKGILDPRTGKTVGSDDAFFNDLNGELSDKGFIVTSADALITWART 60

Query: 53  GSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRR 112
           GSLMWMTFGLACCAVEMM  SMPRYD ERFG APRASPRQSDVMIVAGTLTNKMA ALR+
Sbjct: 61  GSLMWMTFGLACCAVEMMHISMPRYDAERFGIAPRASPRQSDVMIVAGTLTNKMAPALRK 120

Query: 113 VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILL 172
           VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR+VPVDIYVPGCPPTAEAL+YGILL
Sbjct: 121 VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRVVPVDIYVPGCPPTAEALLYGILL 180

Query: 173 LQKKIRRVGNVK 184
           LQKKIRR G ++
Sbjct: 181 LQKKIRRTGTIE 192


>gi|23501690|ref|NP_697817.1| NADH dehydrogenase subunit B [Brucella suis 1330]
 gi|148559527|ref|YP_001258781.1| NADH dehydrogenase subunit B [Brucella ovis ATCC 25840]
 gi|161618767|ref|YP_001592654.1| NADH dehydrogenase subunit B [Brucella canis ATCC 23365]
 gi|163843076|ref|YP_001627480.1| NADH dehydrogenase subunit B [Brucella suis ATCC 23445]
 gi|225627300|ref|ZP_03785337.1| NADH-quinone oxidoreductase, B subunit [Brucella ceti str. Cudo]
 gi|225852319|ref|YP_002732552.1| NADH dehydrogenase subunit B [Brucella melitensis ATCC 23457]
 gi|254693541|ref|ZP_05155369.1| NADH dehydrogenase subunit B [Brucella abortus bv. 3 str. Tulya]
 gi|254701571|ref|ZP_05163399.1| NADH dehydrogenase subunit B [Brucella suis bv. 5 str. 513]
 gi|254704118|ref|ZP_05165946.1| NADH dehydrogenase subunit B [Brucella suis bv. 3 str. 686]
 gi|254706982|ref|ZP_05168810.1| NADH dehydrogenase subunit B [Brucella pinnipedialis M163/99/10]
 gi|254709911|ref|ZP_05171722.1| NADH dehydrogenase subunit B [Brucella pinnipedialis B2/94]
 gi|254713912|ref|ZP_05175723.1| NADH dehydrogenase subunit B [Brucella ceti M644/93/1]
 gi|254717030|ref|ZP_05178841.1| NADH dehydrogenase subunit B [Brucella ceti M13/05/1]
 gi|254718912|ref|ZP_05180723.1| NADH dehydrogenase subunit B [Brucella sp. 83/13]
 gi|256031404|ref|ZP_05445018.1| NADH dehydrogenase subunit B [Brucella pinnipedialis M292/94/1]
 gi|256044482|ref|ZP_05447386.1| NADH dehydrogenase subunit B [Brucella melitensis bv. 1 str. Rev.1]
 gi|256060915|ref|ZP_05451073.1| NADH dehydrogenase subunit B [Brucella neotomae 5K33]
 gi|256113333|ref|ZP_05454195.1| NADH dehydrogenase subunit B [Brucella melitensis bv. 3 str. Ether]
 gi|256159525|ref|ZP_05457293.1| NADH dehydrogenase subunit B [Brucella ceti M490/95/1]
 gi|256254812|ref|ZP_05460348.1| NADH dehydrogenase subunit B [Brucella ceti B1/94]
 gi|256264182|ref|ZP_05466714.1| NADH dehydrogenase beta subunit [Brucella melitensis bv. 2 str.
           63/9]
 gi|256369235|ref|YP_003106743.1| NADH dehydrogenase beta subunit [Brucella microti CCM 4915]
 gi|260168538|ref|ZP_05755349.1| NADH dehydrogenase subunit B [Brucella sp. F5/99]
 gi|261213806|ref|ZP_05928087.1| NADH-quinone oxidoreductase [Brucella abortus bv. 3 str. Tulya]
 gi|261218837|ref|ZP_05933118.1| NADH-quinone oxidoreductase subunit B [Brucella ceti M13/05/1]
 gi|261221993|ref|ZP_05936274.1| NADH-quinone oxidoreductase subunit B [Brucella ceti B1/94]
 gi|261314445|ref|ZP_05953642.1| NADH-quinone oxidoreductase subunit B [Brucella pinnipedialis
           M163/99/10]
 gi|261317457|ref|ZP_05956654.1| NADH-quinone oxidoreductase subunit B [Brucella pinnipedialis
           B2/94]
 gi|261321664|ref|ZP_05960861.1| NADH-quinone oxidoreductase subunit B [Brucella ceti M644/93/1]
 gi|261324915|ref|ZP_05964112.1| NADH-quinone oxidoreductase subunit B [Brucella neotomae 5K33]
 gi|261752124|ref|ZP_05995833.1| NADH-quinone oxidoreductase subunit B [Brucella suis bv. 5 str.
           513]
 gi|261754784|ref|ZP_05998493.1| NADH-quinone oxidoreductase subunit B [Brucella suis bv. 3 str.
           686]
 gi|261758011|ref|ZP_06001720.1| NADH dehydrogenase subunit B [Brucella sp. F5/99]
 gi|265983899|ref|ZP_06096634.1| NADH-quinone oxidoreductase subunit B [Brucella sp. 83/13]
 gi|265988493|ref|ZP_06101050.1| NADH-quinone oxidoreductase subunit B [Brucella pinnipedialis
           M292/94/1]
 gi|265990906|ref|ZP_06103463.1| NADH-quinone oxidoreductase subunit B [Brucella melitensis bv. 1
           str. Rev.1]
 gi|265994743|ref|ZP_06107300.1| NADH-quinone oxidoreductase subunit B [Brucella melitensis bv. 3
           str. Ether]
 gi|265997957|ref|ZP_06110514.1| NADH-quinone oxidoreductase subunit B [Brucella ceti M490/95/1]
 gi|294852160|ref|ZP_06792833.1| NADH-quinone oxidoreductase subunit B [Brucella sp. NVSL 07-0026]
 gi|306838240|ref|ZP_07471092.1| NADH-quinone oxidoreductase, B subunit [Brucella sp. NF 2653]
 gi|306841959|ref|ZP_07474636.1| NADH-quinone oxidoreductase, B subunit [Brucella sp. BO2]
 gi|306843740|ref|ZP_07476339.1| NADH-quinone oxidoreductase, B subunit [Brucella sp. BO1]
 gi|81752805|sp|Q8G1B6|NUOB_BRUSU RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|218527976|sp|A9MAI0|NUOB_BRUC2 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|218527977|sp|A5VPY4|NUOB_BRUO2 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|218527978|sp|B0CLD0|NUOB_BRUSI RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|218528072|sp|Q8YGK1|NUOB_BRUME RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|254767790|sp|C0RIE0|NUOB_BRUMB RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|23347612|gb|AAN29732.1| NADH dehydrogenase I, B subunit [Brucella suis 1330]
 gi|148370784|gb|ABQ60763.1| NADH dehydrogenase I, B subunit [Brucella ovis ATCC 25840]
 gi|161335578|gb|ABX61883.1| NADH-quinone oxidoreductase, B subunit [Brucella canis ATCC 23365]
 gi|163673799|gb|ABY37910.1| NADH-quinone oxidoreductase, B subunit [Brucella suis ATCC 23445]
 gi|225617305|gb|EEH14350.1| NADH-quinone oxidoreductase, B subunit [Brucella ceti str. Cudo]
 gi|225640684|gb|ACO00598.1| NADH-quinone oxidoreductase, B subunit [Brucella melitensis ATCC
           23457]
 gi|255999395|gb|ACU47794.1| NADH dehydrogenase beta subunit [Brucella microti CCM 4915]
 gi|260915413|gb|EEX82274.1| NADH-quinone oxidoreductase [Brucella abortus bv. 3 str. Tulya]
 gi|260920577|gb|EEX87230.1| NADH-quinone oxidoreductase subunit B [Brucella ceti B1/94]
 gi|260923926|gb|EEX90494.1| NADH-quinone oxidoreductase subunit B [Brucella ceti M13/05/1]
 gi|261294354|gb|EEX97850.1| NADH-quinone oxidoreductase subunit B [Brucella ceti M644/93/1]
 gi|261296680|gb|EEY00177.1| NADH-quinone oxidoreductase subunit B [Brucella pinnipedialis
           B2/94]
 gi|261300895|gb|EEY04392.1| NADH-quinone oxidoreductase subunit B [Brucella neotomae 5K33]
 gi|261303471|gb|EEY06968.1| NADH-quinone oxidoreductase subunit B [Brucella pinnipedialis
           M163/99/10]
 gi|261737995|gb|EEY25991.1| NADH dehydrogenase subunit B [Brucella sp. F5/99]
 gi|261741877|gb|EEY29803.1| NADH-quinone oxidoreductase subunit B [Brucella suis bv. 5 str.
           513]
 gi|261744537|gb|EEY32463.1| NADH-quinone oxidoreductase subunit B [Brucella suis bv. 3 str.
           686]
 gi|262552425|gb|EEZ08415.1| NADH-quinone oxidoreductase subunit B [Brucella ceti M490/95/1]
 gi|262765856|gb|EEZ11645.1| NADH-quinone oxidoreductase subunit B [Brucella melitensis bv. 3
           str. Ether]
 gi|263001690|gb|EEZ14265.1| NADH-quinone oxidoreductase subunit B [Brucella melitensis bv. 1
           str. Rev.1]
 gi|263094400|gb|EEZ18245.1| NADH dehydrogenase beta subunit [Brucella melitensis bv. 2 str.
           63/9]
 gi|264660690|gb|EEZ30951.1| NADH-quinone oxidoreductase subunit B [Brucella pinnipedialis
           M292/94/1]
 gi|264662491|gb|EEZ32752.1| NADH-quinone oxidoreductase subunit B [Brucella sp. 83/13]
 gi|294820749|gb|EFG37748.1| NADH-quinone oxidoreductase subunit B [Brucella sp. NVSL 07-0026]
 gi|306275931|gb|EFM57644.1| NADH-quinone oxidoreductase, B subunit [Brucella sp. BO1]
 gi|306287950|gb|EFM59361.1| NADH-quinone oxidoreductase, B subunit [Brucella sp. BO2]
 gi|306406684|gb|EFM62911.1| NADH-quinone oxidoreductase, B subunit [Brucella sp. NF 2653]
 gi|326408826|gb|ADZ65891.1| NADH dehydrogenase subunit B [Brucella melitensis M28]
          Length = 193

 Score =  302 bits (774), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 144/192 (75%), Positives = 160/192 (83%), Gaps = 8/192 (4%)

Query: 1   MGLTTVNQKIISGQSSCSLE--------KVDADFSRISSEITHKGFLVTSVDQLVTWART 52
           MGLT  N  +++ Q    L+          DA F+ ++ E++ KGF+VTS D L+TWART
Sbjct: 1   MGLTGTNTTLVAPQPKGILDPRTGKPVGSDDAFFNDLNGELSDKGFIVTSADALITWART 60

Query: 53  GSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRR 112
           GSLMWMTFGLACCAVEMM  SMPRYD ERFG APRASPRQSDVMIVAGTLTNKMA ALR+
Sbjct: 61  GSLMWMTFGLACCAVEMMHISMPRYDAERFGIAPRASPRQSDVMIVAGTLTNKMAPALRK 120

Query: 113 VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILL 172
           VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR+VPVDIYVPGCPPTAEAL+YGILL
Sbjct: 121 VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRVVPVDIYVPGCPPTAEALLYGILL 180

Query: 173 LQKKIRRVGNVK 184
           LQKKIRR G ++
Sbjct: 181 LQKKIRRTGTIE 192


>gi|163759542|ref|ZP_02166627.1| NADH dehydrogenase beta subunit [Hoeflea phototrophica DFL-43]
 gi|162283139|gb|EDQ33425.1| NADH dehydrogenase beta subunit [Hoeflea phototrophica DFL-43]
          Length = 191

 Score =  302 bits (773), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 138/177 (77%), Positives = 156/177 (88%)

Query: 8   QKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAV 67
           + II   +   + + DA F  +++E+  KGFLVTS D+L+ W+RTGSLMWMTFGLACCAV
Sbjct: 14  KGIIDPNTGKPVGQDDAFFGEVNNELADKGFLVTSTDELINWSRTGSLMWMTFGLACCAV 73

Query: 68  EMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMG 127
           EMMQ SMPRYD ERFGFAPRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMG
Sbjct: 74  EMMQMSMPRYDAERFGFAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMG 133

Query: 128 SCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           SCANGGGYYHYSYSVVRGCDR+VPVDIYVPGCPPTAEAL+YG+LLLQKK+RR G ++
Sbjct: 134 SCANGGGYYHYSYSVVRGCDRVVPVDIYVPGCPPTAEALLYGVLLLQKKMRRTGTIE 190


>gi|154248551|ref|YP_001419509.1| NADH-quinone oxidoreductase, B subunit [Xanthobacter autotrophicus
           Py2]
 gi|238065245|sp|A7IPA6|NUOB_XANP2 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|154162636|gb|ABS69852.1| NADH-quinone oxidoreductase, B subunit [Xanthobacter autotrophicus
           Py2]
          Length = 194

 Score =  302 bits (773), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 138/177 (77%), Positives = 156/177 (88%)

Query: 8   QKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAV 67
           Q I+   +   +   D  F  I+SE+  KGF++T+ D L+TWARTGSLMWMTFGLACCAV
Sbjct: 17  QGIVDPSTGRPVGADDPFFKEINSELADKGFILTTADDLITWARTGSLMWMTFGLACCAV 76

Query: 68  EMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMG 127
           EMMQ SMPRYD+ERFGFAPRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMG
Sbjct: 77  EMMQVSMPRYDVERFGFAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMG 136

Query: 128 SCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           SCANGGGYYH+SY+VVRGCDRIVPVDIYVPGCPPTAEAL+YG+LLLQKKIRR+G ++
Sbjct: 137 SCANGGGYYHFSYAVVRGCDRIVPVDIYVPGCPPTAEALLYGVLLLQKKIRRIGTIE 193


>gi|307942118|ref|ZP_07657469.1| NADH-quinone oxidoreductase subunit b 1 [Roseibium sp. TrichSKD4]
 gi|307774404|gb|EFO33614.1| NADH-quinone oxidoreductase subunit b 1 [Roseibium sp. TrichSKD4]
          Length = 193

 Score =  301 bits (771), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 143/192 (74%), Positives = 162/192 (84%), Gaps = 8/192 (4%)

Query: 1   MGLTTVNQKIISGQSSCSLEK-----VDAD---FSRISSEITHKGFLVTSVDQLVTWART 52
           MGLT  ++ +I+ Q    ++      V AD   F  ++ ++  KGFLVTS D L+ WART
Sbjct: 1   MGLTQTSKPLIAEQPKGIIDPNTGKPVGADDPFFLEVNDQLADKGFLVTSTDNLIQWART 60

Query: 53  GSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRR 112
           GSLMWMTFGLACCAVEMMQ SMPRYD+ERFGFAPRASPRQSDVMIVAGTLTNKMA ALR+
Sbjct: 61  GSLMWMTFGLACCAVEMMQMSMPRYDVERFGFAPRASPRQSDVMIVAGTLTNKMAPALRK 120

Query: 113 VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILL 172
           VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR+VPVDIYVPGCPPTAEAL+YG+L+
Sbjct: 121 VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRVVPVDIYVPGCPPTAEALLYGVLM 180

Query: 173 LQKKIRRVGNVK 184
           LQKKIRR G ++
Sbjct: 181 LQKKIRRTGTIE 192


>gi|254503578|ref|ZP_05115729.1| NADH-quinone oxidoreductase, B subunit subfamily [Labrenzia
           alexandrii DFL-11]
 gi|222439649|gb|EEE46328.1| NADH-quinone oxidoreductase, B subunit subfamily [Labrenzia
           alexandrii DFL-11]
          Length = 199

 Score =  301 bits (771), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 143/191 (74%), Positives = 157/191 (82%), Gaps = 7/191 (3%)

Query: 1   MGLTTVN-------QKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTG 53
           MGLTT         + II   +   +   D  F  ++ E+  KGFLVTS D L+ WARTG
Sbjct: 8   MGLTTAKPLIAEQPKGIIDPNTGKPVGADDPFFLEVNDELADKGFLVTSTDNLIQWARTG 67

Query: 54  SLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRV 113
           SLMWMTFGLACCAVEMMQ SMPRYD ERFGFAPRASPRQSDVMIVAGTLTNKMA ALR+V
Sbjct: 68  SLMWMTFGLACCAVEMMQMSMPRYDAERFGFAPRASPRQSDVMIVAGTLTNKMAPALRKV 127

Query: 114 YDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLL 173
           YDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR+VPVDIYVPGCPPTAEAL+YG+L+L
Sbjct: 128 YDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRVVPVDIYVPGCPPTAEALLYGVLML 187

Query: 174 QKKIRRVGNVK 184
           QKKIRR G ++
Sbjct: 188 QKKIRRTGTIE 198


>gi|158423292|ref|YP_001524584.1| NADH dehydrogenase subunit B [Azorhizobium caulinodans ORS 571]
 gi|218527974|sp|A8I3Y7|NUOB_AZOC5 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|158330181|dbj|BAF87666.1| NADH ubiqionone oxidoreductase chain B protein [Azorhizobium
           caulinodans ORS 571]
          Length = 192

 Score =  301 bits (770), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 138/177 (77%), Positives = 156/177 (88%)

Query: 8   QKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAV 67
           + II   +   +   D  +  I++E+  KGFLVT+VD L+TWARTGSLMWMTFGLACCAV
Sbjct: 15  KGIIDPSTGRPILSDDPFYKEINAELADKGFLVTTVDDLITWARTGSLMWMTFGLACCAV 74

Query: 68  EMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMG 127
           EMMQ SMPRYD+ERFGFAPRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMG
Sbjct: 75  EMMQVSMPRYDVERFGFAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMG 134

Query: 128 SCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           SCANGGGYYHYSY+VVRGCDR+VPVDIYVPGCPPTAEAL+YG+LLLQ+KIRR G ++
Sbjct: 135 SCANGGGYYHYSYAVVRGCDRVVPVDIYVPGCPPTAEALLYGVLLLQRKIRRTGTIE 191


>gi|75676078|ref|YP_318499.1| NADH dehydrogenase subunit B [Nitrobacter winogradskyi Nb-255]
 gi|123613264|sp|Q3SRE4|NUOB_NITWN RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|74420948|gb|ABA05147.1| NADH dehydrogenase subunit B [Nitrobacter winogradskyi Nb-255]
          Length = 207

 Score =  301 bits (770), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 138/162 (85%), Positives = 149/162 (91%)

Query: 23  DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82
           D  F  ++ E++ KGF V + D L+TWARTGSLMWMTFGLACCAVEMMQ SMPRYD+ERF
Sbjct: 45  DPYFLEVNHELSDKGFFVAAADDLITWARTGSLMWMTFGLACCAVEMMQVSMPRYDVERF 104

Query: 83  GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142
           GFAPRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSV
Sbjct: 105 GFAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSV 164

Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           VRGCDRIVPVDIYVPGCPPTAEAL+YGILLLQKKIRRVG ++
Sbjct: 165 VRGCDRIVPVDIYVPGCPPTAEALLYGILLLQKKIRRVGTIE 206


>gi|121602032|ref|YP_989071.1| NADH dehydrogenase subunit B [Bartonella bacilliformis KC583]
 gi|238055234|sp|A1USW8|NUOB_BARBK RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|120614209|gb|ABM44810.1| NADH dehydrogenase (quinone), B subunit [Bartonella bacilliformis
           KC583]
          Length = 193

 Score =  300 bits (769), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 143/192 (74%), Positives = 162/192 (84%), Gaps = 8/192 (4%)

Query: 1   MGLTTVNQKIISGQSSCSLE--------KVDADFSRISSEITHKGFLVTSVDQLVTWART 52
           MGL   N  I++ Q+   ++          D  F  +++E++ KGFLVTSVD L+TWART
Sbjct: 1   MGLVFNNSTIVAPQAKGIIDPNTSKLIGANDQFFQDMNAELSDKGFLVTSVDSLITWART 60

Query: 53  GSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRR 112
           GSLMWM+FGLACCAVEMMQ SMP YD ERFG+APRASPRQSDVM+VAGTLTNKMA ALR+
Sbjct: 61  GSLMWMSFGLACCAVEMMQCSMPHYDNERFGYAPRASPRQSDVMVVAGTLTNKMAPALRK 120

Query: 113 VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILL 172
           VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGILL
Sbjct: 121 VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILL 180

Query: 173 LQKKIRRVGNVK 184
           LQKKIRR G+++
Sbjct: 181 LQKKIRRTGSIE 192


>gi|27380029|ref|NP_771558.1| NADH dehydrogenase subunit B [Bradyrhizobium japonicum USDA 110]
 gi|81736772|sp|Q89KI7|NUOB_BRAJA RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|27353183|dbj|BAC50183.1| NADH ubiqionone oxidoreductase chain B [Bradyrhizobium japonicum
           USDA 110]
          Length = 202

 Score =  300 bits (768), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 138/182 (75%), Positives = 155/182 (85%)

Query: 3   LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62
           L    + I+   +   +   D  F  ++SE++ KGF V + D L+TWARTGSLMWMTFGL
Sbjct: 20  LAPAPKGILDPSTGKPVGANDPFFLEVNSELSDKGFFVAATDDLITWARTGSLMWMTFGL 79

Query: 63  ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122
           ACCAVEMMQ SMPRYD+ERFGFAPRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRY
Sbjct: 80  ACCAVEMMQVSMPRYDVERFGFAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRY 139

Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
           VISMGSCANGGGYYHYSYSVVRGCDRIVP+DIYVPGCPPTAEAL+YG+LLLQKKIRR G 
Sbjct: 140 VISMGSCANGGGYYHYSYSVVRGCDRIVPIDIYVPGCPPTAEALLYGVLLLQKKIRRTGT 199

Query: 183 VK 184
           ++
Sbjct: 200 IE 201


>gi|85717029|ref|ZP_01047991.1| NADH dehydrogenase beta subunit [Nitrobacter sp. Nb-311A]
 gi|85696153|gb|EAQ34049.1| NADH dehydrogenase beta subunit [Nitrobacter sp. Nb-311A]
          Length = 200

 Score =  300 bits (768), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 137/162 (84%), Positives = 149/162 (91%)

Query: 23  DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82
           D  F  ++ E++ KGF V + D L+TWARTGSLMWMTFGLACCAVEMMQ SMPRYD+ERF
Sbjct: 38  DPYFLEVNHELSDKGFFVAAADDLITWARTGSLMWMTFGLACCAVEMMQVSMPRYDVERF 97

Query: 83  GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142
           GFAPRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSV
Sbjct: 98  GFAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSV 157

Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           VRGCDRIVPVD+YVPGCPPTAEAL+YGILLLQKKIRRVG ++
Sbjct: 158 VRGCDRIVPVDVYVPGCPPTAEALLYGILLLQKKIRRVGTIE 199


>gi|209885052|ref|YP_002288909.1| NADH-quinone oxidoreductase subunit b 1 [Oligotropha
           carboxidovorans OM5]
 gi|238065186|sp|B6JGW0|NUOB_OLICO RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|209873248|gb|ACI93044.1| NADH-quinone oxidoreductase subunit b 1 [Oligotropha
           carboxidovorans OM5]
          Length = 198

 Score =  299 bits (766), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 137/162 (84%), Positives = 149/162 (91%)

Query: 23  DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82
           D  F  I+ E++ KGF V + D L+TWARTGSLMWMTFGLACCAVEMMQ SMPRYD+ERF
Sbjct: 36  DRYFLEINHELSDKGFFVAAADDLITWARTGSLMWMTFGLACCAVEMMQVSMPRYDVERF 95

Query: 83  GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142
           GFAPRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSV
Sbjct: 96  GFAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSV 155

Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           VRGCDRIVPVDIYVPGCPPTAEAL+YG+LLLQKKIRR+G ++
Sbjct: 156 VRGCDRIVPVDIYVPGCPPTAEALLYGVLLLQKKIRRIGTIE 197


>gi|220924006|ref|YP_002499308.1| NADH dehydrogenase subunit B [Methylobacterium nodulans ORS 2060]
 gi|238065169|sp|B8IUU7|NUOB_METNO RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|219948613|gb|ACL59005.1| NADH-quinone oxidoreductase, B subunit [Methylobacterium nodulans
           ORS 2060]
          Length = 197

 Score =  299 bits (766), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 137/177 (77%), Positives = 153/177 (86%)

Query: 8   QKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAV 67
           + II   +   +   D  F  I+ E+  +GFL+T+ D L+TWARTGSLMWMTFGLACCAV
Sbjct: 20  KGIIDPATGLPVGATDPTFLSINDELADRGFLLTTADDLITWARTGSLMWMTFGLACCAV 79

Query: 68  EMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMG 127
           EMMQ SMPRYD ERFGFAPRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMG
Sbjct: 80  EMMQMSMPRYDAERFGFAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMG 139

Query: 128 SCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           SCANGGGYYHYSYSVVRGCDR+VPVDIYVPGCPP+AEAL+YG+LLLQKKIRR G ++
Sbjct: 140 SCANGGGYYHYSYSVVRGCDRVVPVDIYVPGCPPSAEALLYGVLLLQKKIRRTGTIE 196


>gi|170742512|ref|YP_001771167.1| NADH dehydrogenase subunit B [Methylobacterium sp. 4-46]
 gi|238065172|sp|B0ULK5|NUOB_METS4 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|168196786|gb|ACA18733.1| NADH-quinone oxidoreductase, B subunit [Methylobacterium sp. 4-46]
          Length = 195

 Score =  298 bits (764), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 136/177 (76%), Positives = 153/177 (86%)

Query: 8   QKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAV 67
           + I+   +   +   D  F  I+ E+  +GFL+T+ D L+TWARTGSLMWMTFGLACCAV
Sbjct: 18  KGILDPATGLPIGATDPTFLSINDELADRGFLLTTADDLITWARTGSLMWMTFGLACCAV 77

Query: 68  EMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMG 127
           EMMQ SMPRYD ERFGFAPRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMG
Sbjct: 78  EMMQMSMPRYDAERFGFAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMG 137

Query: 128 SCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           SCANGGGYYHYSYSVVRGCDR+VPVDIYVPGCPP+AEAL+YG+LLLQKKIRR G ++
Sbjct: 138 SCANGGGYYHYSYSVVRGCDRVVPVDIYVPGCPPSAEALLYGVLLLQKKIRRTGTIE 194


>gi|92117743|ref|YP_577472.1| NADH dehydrogenase subunit B [Nitrobacter hamburgensis X14]
 gi|123387068|sp|Q1QL85|NUOB_NITHX RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|91800637|gb|ABE63012.1| NADH dehydrogenase subunit B [Nitrobacter hamburgensis X14]
          Length = 202

 Score =  298 bits (764), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 137/182 (75%), Positives = 155/182 (85%)

Query: 3   LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62
           +T     I+  ++   +   D  F  ++ E++ KGF V + D L+TWARTGSLMWMTFGL
Sbjct: 20  VTPAAASILDPRTGRPVGAGDPYFLEVNHELSDKGFFVAATDDLITWARTGSLMWMTFGL 79

Query: 63  ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122
           ACCAVEMMQ SMPRYD+ERFGFAPRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRY
Sbjct: 80  ACCAVEMMQVSMPRYDVERFGFAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRY 139

Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
           VISMGSCANGGGYYHYSYSVVRGCDRIVP+D+YVPGCPPTAEAL+YGILLLQKKIRR G 
Sbjct: 140 VISMGSCANGGGYYHYSYSVVRGCDRIVPIDVYVPGCPPTAEALLYGILLLQKKIRRTGT 199

Query: 183 VK 184
           ++
Sbjct: 200 IE 201


>gi|49475657|ref|YP_033698.1| NADH dehydrogenase subunit B [Bartonella henselae str. Houston-1]
 gi|81647866|sp|Q6G389|NUOB_BARHE RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|49238464|emb|CAF27692.1| NADH dehydrogenase I, B subunit [Bartonella henselae str.
           Houston-1]
          Length = 193

 Score =  298 bits (763), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 142/192 (73%), Positives = 163/192 (84%), Gaps = 8/192 (4%)

Query: 1   MGLTTVNQKIISGQSSCSL-----EKVDAD---FSRISSEITHKGFLVTSVDQLVTWART 52
           MGL + N  I + +S   +     E + +D   F  +++E++ KGFLVTS D L+TWART
Sbjct: 1   MGLISSNSTITAPKSKGIIDPNTGELIGSDDRFFCEVNAELSEKGFLVTSADALITWART 60

Query: 53  GSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRR 112
           GSLMWM+FGLACCA+EMMQ SMP YD ERFG+APRASPRQSDVM+VAGTLTNKMA ALR+
Sbjct: 61  GSLMWMSFGLACCAIEMMQCSMPHYDNERFGYAPRASPRQSDVMVVAGTLTNKMAPALRK 120

Query: 113 VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILL 172
           VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGILL
Sbjct: 121 VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILL 180

Query: 173 LQKKIRRVGNVK 184
           LQKKIRR G+++
Sbjct: 181 LQKKIRRTGSIE 192


>gi|319405697|emb|CBI79320.1| NADH dehydrogenase I, B subunit [Bartonella sp. AR 15-3]
          Length = 193

 Score =  298 bits (763), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 139/168 (82%), Positives = 154/168 (91%), Gaps = 3/168 (1%)

Query: 20  EKVDAD---FSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPR 76
           E VD++   FS I++E+  KGFLVTS D L+TWARTGSLMWM+FGLACCAVEMMQ SMP 
Sbjct: 25  ELVDSNNKFFSDINTELGDKGFLVTSADALITWARTGSLMWMSFGLACCAVEMMQCSMPH 84

Query: 77  YDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY 136
           YD ERFG+APRASPRQSDVM+VAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYY
Sbjct: 85  YDNERFGYAPRASPRQSDVMVVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYY 144

Query: 137 HYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           HYSYSVVRGCDRIVPVDIY+PGCPPTAEAL+YGILLLQKKIRR G+++
Sbjct: 145 HYSYSVVRGCDRIVPVDIYIPGCPPTAEALLYGILLLQKKIRRTGSIE 192


>gi|299135032|ref|ZP_07028223.1| NADH-quinone oxidoreductase, B subunit [Afipia sp. 1NLS2]
 gi|298590009|gb|EFI50213.1| NADH-quinone oxidoreductase, B subunit [Afipia sp. 1NLS2]
          Length = 197

 Score =  298 bits (763), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 137/162 (84%), Positives = 148/162 (91%)

Query: 23  DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82
           D  F  I+ E++ KGF V + D L+TWARTGSLMWMTFGLACCAVEMMQ SMPRYD+ERF
Sbjct: 35  DRYFLEINHELSDKGFFVAAADDLITWARTGSLMWMTFGLACCAVEMMQVSMPRYDVERF 94

Query: 83  GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142
           GFAPRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSV
Sbjct: 95  GFAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSV 154

Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           VRGCDRIVPVDIYVPGCPPTAEAL+YG+LLLQKKIRR G ++
Sbjct: 155 VRGCDRIVPVDIYVPGCPPTAEALLYGVLLLQKKIRRTGTIE 196


>gi|319898883|ref|YP_004158976.1| NADH dehydrogenase I, B subunit [Bartonella clarridgeiae 73]
 gi|319402847|emb|CBI76398.1| NADH dehydrogenase I, B subunit [Bartonella clarridgeiae 73]
          Length = 193

 Score =  298 bits (763), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 138/162 (85%), Positives = 150/162 (92%)

Query: 23  DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82
           D  FS I++E+  KGFLVTS D L+TWARTGSLMWM+FGLACCAVEMMQ SMP YD ERF
Sbjct: 31  DKFFSDINTELGDKGFLVTSADALITWARTGSLMWMSFGLACCAVEMMQCSMPHYDNERF 90

Query: 83  GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142
           G+APRASPRQSDVM+VAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSV
Sbjct: 91  GYAPRASPRQSDVMVVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSV 150

Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           VRGCDRIVPVDIYVPGCPPTAEAL+YGILLLQKKIRR G+++
Sbjct: 151 VRGCDRIVPVDIYVPGCPPTAEALLYGILLLQKKIRRTGSIE 192


>gi|326538542|gb|ADZ86757.1| NADH-quinone oxidoreductase, B subunit [Brucella melitensis M5-90]
          Length = 191

 Score =  298 bits (763), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 137/162 (84%), Positives = 149/162 (91%)

Query: 23  DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82
           DA F+ ++ E++ KGF+VTS D L+TWARTGSLMWMTFGLACCAVEMM  SMPRYD ERF
Sbjct: 29  DAFFNDLNGELSDKGFIVTSADALITWARTGSLMWMTFGLACCAVEMMHISMPRYDAERF 88

Query: 83  GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142
           G APRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSV
Sbjct: 89  GIAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSV 148

Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           VRGCDR+VPVDIYVPGCPPTAEAL+YGILLLQKKIRR G ++
Sbjct: 149 VRGCDRVVPVDIYVPGCPPTAEALLYGILLLQKKIRRTGTIE 190


>gi|319404258|emb|CBI77851.1| NADH dehydrogenase I, B subunit [Bartonella rochalimae ATCC
           BAA-1498]
          Length = 193

 Score =  298 bits (762), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 137/162 (84%), Positives = 151/162 (93%)

Query: 23  DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82
           D  FS I++E+  KGFLVTSVD L+TWARTGSLMWM+FGLACCAVEM+Q SMP YD ERF
Sbjct: 31  DKFFSDINAELGDKGFLVTSVDALITWARTGSLMWMSFGLACCAVEMIQCSMPHYDNERF 90

Query: 83  GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142
           G+APRASPRQSDVM+VAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSV
Sbjct: 91  GYAPRASPRQSDVMVVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSV 150

Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           VRGCDRIVPVDIY+PGCPPTAEAL+YGILLLQKKIRR G+++
Sbjct: 151 VRGCDRIVPVDIYIPGCPPTAEALLYGILLLQKKIRRTGSIE 192


>gi|114569906|ref|YP_756586.1| NADH dehydrogenase subunit B [Maricaulis maris MCS10]
 gi|122316124|sp|Q0APY9|NUOB_MARMM RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|114340368|gb|ABI65648.1| NADH dehydrogenase subunit B [Maricaulis maris MCS10]
          Length = 188

 Score =  298 bits (762), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 139/165 (84%), Positives = 150/165 (90%)

Query: 20  EKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDL 79
           +K D  F  +S  +  KGF+V + D LVTWARTGSLMWMTFGLACCAVEMMQASMPRYD+
Sbjct: 23  KKHDPFFDGVSDALADKGFVVAAADDLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDV 82

Query: 80  ERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS 139
           ERFGFAPRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYS
Sbjct: 83  ERFGFAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYS 142

Query: 140 YSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           YSVVRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQKKIRR G+++
Sbjct: 143 YSVVRGCDRIVPVDIYVPGCPPTAEALVYGILQLQKKIRREGSIE 187


>gi|328543686|ref|YP_004303795.1| NADH-quinone oxidoreductase subunit B [polymorphum gilvum
           SL003B-26A1]
 gi|326413430|gb|ADZ70493.1| NADH-quinone oxidoreductase subunit B [Polymorphum gilvum
           SL003B-26A1]
          Length = 193

 Score =  298 bits (762), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 142/192 (73%), Positives = 157/192 (81%), Gaps = 8/192 (4%)

Query: 1   MGLTTVN--------QKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWART 52
           MGLTT          + II   +   +   D  F  ++ E+  KGFLVT+ D L+ WART
Sbjct: 1   MGLTTTKGPLVAPAPRGIIDPNTGKPVGANDPFFMGMNDELADKGFLVTTTDNLIQWART 60

Query: 53  GSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRR 112
           GSLMWMTFGLACCAVEMMQ SMPRYD ERFGFAPRASPRQSDVMIVAGTLTNKMA ALR+
Sbjct: 61  GSLMWMTFGLACCAVEMMQMSMPRYDAERFGFAPRASPRQSDVMIVAGTLTNKMAPALRK 120

Query: 113 VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILL 172
           VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR+VPVDIYVPGCPPTAEAL+YG+L+
Sbjct: 121 VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRVVPVDIYVPGCPPTAEALLYGVLM 180

Query: 173 LQKKIRRVGNVK 184
           LQKKIRR G ++
Sbjct: 181 LQKKIRRTGTIE 192


>gi|188580284|ref|YP_001923729.1| NADH dehydrogenase subunit B [Methylobacterium populi BJ001]
 gi|238065170|sp|B1ZA45|NUOB_METPB RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|179343782|gb|ACB79194.1| NADH-quinone oxidoreductase, B subunit [Methylobacterium populi
           BJ001]
          Length = 195

 Score =  297 bits (761), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 138/177 (77%), Positives = 153/177 (86%)

Query: 8   QKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAV 67
           + II   +   +   D  F  ISSE+  +GFLVTS D+L+ WARTGSLMWMTFGLACCAV
Sbjct: 18  KGIIDPATGRPIGANDPTFLSISSELADRGFLVTSADELINWARTGSLMWMTFGLACCAV 77

Query: 68  EMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMG 127
           EMMQ SMPRYD ERFGFAPR SPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMG
Sbjct: 78  EMMQMSMPRYDCERFGFAPRGSPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMG 137

Query: 128 SCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           SCANGGGYYHYSYSVVRGCDR+VPVDIYVPGCPP+AEAL+YG+LLLQ+KIRR G ++
Sbjct: 138 SCANGGGYYHYSYSVVRGCDRVVPVDIYVPGCPPSAEALLYGVLLLQRKIRRTGTIE 194


>gi|319408580|emb|CBI82235.1| NADH dehydrogenase I, B subunit [Bartonella schoenbuchensis R1]
          Length = 176

 Score =  297 bits (761), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 137/162 (84%), Positives = 150/162 (92%)

Query: 23  DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82
           D  F  I++E++ KGFLVTS D L+TWARTGSLMWM+FGLACCAVEMMQ SMP YD ERF
Sbjct: 14  DKFFHDINAELSDKGFLVTSADALITWARTGSLMWMSFGLACCAVEMMQCSMPHYDNERF 73

Query: 83  GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142
           G+APRASPRQSDVM+VAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSV
Sbjct: 74  GYAPRASPRQSDVMVVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSV 133

Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           VRGCDRIVPVDIYVPGCPPTAEAL+YGILLLQKKIRR G+++
Sbjct: 134 VRGCDRIVPVDIYVPGCPPTAEALLYGILLLQKKIRRTGSIE 175


>gi|146341114|ref|YP_001206162.1| NADH dehydrogenase subunit B [Bradyrhizobium sp. ORS278]
 gi|238055272|sp|A4YVL1|NUOB_BRASO RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|146193920|emb|CAL77937.1| NADH-quinone oxidoreductase chain B (NADH dehydrogenase I, chain B)
           (NDH-1, chain B) [Bradyrhizobium sp. ORS278]
          Length = 193

 Score =  297 bits (760), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 135/162 (83%), Positives = 147/162 (90%)

Query: 23  DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82
           D  F  +  E++ KGF V + D L+TWARTGSLMWMTFGLACCAVEMMQ SMPRYD+ERF
Sbjct: 31  DPYFLEVKHELSDKGFFVATADDLITWARTGSLMWMTFGLACCAVEMMQVSMPRYDVERF 90

Query: 83  GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142
           GFAPRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSV
Sbjct: 91  GFAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSV 150

Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           VRGCDRIVP+DIYVPGCPPTAEAL+YG+LLLQKKIRR G ++
Sbjct: 151 VRGCDRIVPIDIYVPGCPPTAEALLYGVLLLQKKIRRTGTIE 192


>gi|319407266|emb|CBI80905.1| NADH dehydrogenase I, B subunit [Bartonella sp. 1-1C]
          Length = 193

 Score =  297 bits (760), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 136/162 (83%), Positives = 151/162 (93%)

Query: 23  DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82
           D  F+ I++E+  KGFLVTSVD L+TWARTGSLMWM+FGLACCAVEM+Q SMP YD ERF
Sbjct: 31  DKFFNDINAELGDKGFLVTSVDSLITWARTGSLMWMSFGLACCAVEMIQCSMPHYDNERF 90

Query: 83  GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142
           G+APRASPRQSDVM+VAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSV
Sbjct: 91  GYAPRASPRQSDVMVVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSV 150

Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           VRGCDRIVPVDIY+PGCPPTAEAL+YGILLLQKKIRR G+++
Sbjct: 151 VRGCDRIVPVDIYIPGCPPTAEALLYGILLLQKKIRRTGSIE 192


>gi|148255914|ref|YP_001240499.1| NADH dehydrogenase subunit B [Bradyrhizobium sp. BTAi1]
 gi|238055271|sp|A5EK99|NUOB_BRASB RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|146408087|gb|ABQ36593.1| NADH dehydrogenase subunit B [Bradyrhizobium sp. BTAi1]
          Length = 194

 Score =  296 bits (759), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 135/162 (83%), Positives = 147/162 (90%)

Query: 23  DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82
           D  F  +  E++ KGF V + D L+TWARTGSLMWMTFGLACCAVEMMQ SMPRYD+ERF
Sbjct: 32  DPYFLEVRHELSDKGFFVATADDLITWARTGSLMWMTFGLACCAVEMMQVSMPRYDVERF 91

Query: 83  GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142
           GFAPRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSV
Sbjct: 92  GFAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSV 151

Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           VRGCDRIVP+DIYVPGCPPTAEAL+YG+LLLQKKIRR G ++
Sbjct: 152 VRGCDRIVPIDIYVPGCPPTAEALLYGVLLLQKKIRRTGTIE 193


>gi|170748477|ref|YP_001754737.1| NADH-quinone oxidoreductase, B subunit [Methylobacterium
           radiotolerans JCM 2831]
 gi|238065171|sp|B1LUN6|NUOB_METRJ RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|170654999|gb|ACB24054.1| NADH-quinone oxidoreductase, B subunit [Methylobacterium
           radiotolerans JCM 2831]
          Length = 195

 Score =  296 bits (759), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 137/177 (77%), Positives = 152/177 (85%)

Query: 8   QKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAV 67
           + II   +   +   D  F  IS E+  +GFL+T+ D+L+ WARTGSLMWMTFGLACCAV
Sbjct: 18  KGIIDPNTGRPIGADDPTFLSISDELADRGFLLTTTDELINWARTGSLMWMTFGLACCAV 77

Query: 68  EMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMG 127
           EMMQ SMPRYD ERFGFAPR SPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMG
Sbjct: 78  EMMQMSMPRYDCERFGFAPRGSPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMG 137

Query: 128 SCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           SCANGGGYYHYSYSVVRGCDR+VPVDIYVPGCPPTAEAL+YG+LLLQKKIRR G ++
Sbjct: 138 SCANGGGYYHYSYSVVRGCDRVVPVDIYVPGCPPTAEALLYGVLLLQKKIRRTGTIE 194


>gi|49474178|ref|YP_032220.1| NADH dehydrogenase subunit B [Bartonella quintana str. Toulouse]
 gi|81647090|sp|Q6FZZ0|NUOB_BARQU RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|49239682|emb|CAF26057.1| NADH dehydrogenase I, B subunit [Bartonella quintana str. Toulouse]
          Length = 193

 Score =  296 bits (759), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 138/178 (77%), Positives = 156/178 (87%)

Query: 7   NQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCA 66
           ++ II   +   +   D  F  I++E++ KGFLVTS D L+TWARTGSLMWM+FGLACCA
Sbjct: 15  SKGIIDPNTGKLIGSDDRFFHDINAELSDKGFLVTSADALITWARTGSLMWMSFGLACCA 74

Query: 67  VEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISM 126
           +EMMQ SMP YD ERFG+APRASPRQSDVM+VAGTLTNKMA ALR+VYDQMPEPRYVISM
Sbjct: 75  IEMMQCSMPHYDNERFGYAPRASPRQSDVMVVAGTLTNKMAPALRKVYDQMPEPRYVISM 134

Query: 127 GSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           GSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGILLLQKKIRR G+++
Sbjct: 135 GSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILLLQKKIRRTGSIE 192


>gi|15888598|ref|NP_354279.1| NADH dehydrogenase subunit B [Agrobacterium tumefaciens str. C58]
 gi|15156318|gb|AAK87064.1| NADH ubiqionone oxidoreductase chain B [Agrobacterium tumefaciens
           str. C58]
          Length = 201

 Score =  296 bits (758), Expect = 8e-79,   Method: Compositional matrix adjust.
 Identities = 140/193 (72%), Positives = 161/193 (83%), Gaps = 9/193 (4%)

Query: 1   MGLTTVNQKIISGQSSCSLEKV--------DADFSRISSEITHKGFLVTSVDQLVTWART 52
           MG++  N  +++ Q    ++          DA F+ I+ E+  KGFLVTS D+L+TWART
Sbjct: 8   MGMSQNNSTLVAPQPKGIIDPATGKPVGSNDAYFTEINDELADKGFLVTSTDELITWART 67

Query: 53  GSLMWMTFGLACCAVE-MMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALR 111
           GSLMWM FGLACCAVE +MQAS PRYD+ERFG APRASPRQSDVMIVAGTLTNKMA ALR
Sbjct: 68  GSLMWMQFGLACCAVEGLMQASGPRYDMERFGVAPRASPRQSDVMIVAGTLTNKMAPALR 127

Query: 112 RVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171
           +VYDQMPEPRYVISMGSCANGGGYYHYSY+VVRGCDR+VPVDIYVPGCPPTAEAL+YG+L
Sbjct: 128 KVYDQMPEPRYVISMGSCANGGGYYHYSYAVVRGCDRVVPVDIYVPGCPPTAEALLYGVL 187

Query: 172 LLQKKIRRVGNVK 184
           LLQKKIRR G ++
Sbjct: 188 LLQKKIRRTGTIE 200


>gi|254469713|ref|ZP_05083118.1| NADH-ubiquinone oxidoreductase chain b protein [Pseudovibrio sp.
           JE062]
 gi|211961548|gb|EEA96743.1| NADH-ubiquinone oxidoreductase chain b protein [Pseudovibrio sp.
           JE062]
          Length = 194

 Score =  296 bits (758), Expect = 9e-79,   Method: Compositional matrix adjust.
 Identities = 137/177 (77%), Positives = 154/177 (87%)

Query: 8   QKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAV 67
           + II   +   + + D  F  +++E++ KGFLVTS + L+ WARTGSLMWMTFGLACCAV
Sbjct: 17  KGIIDPNTGRPVGENDPFFMNVNNELSDKGFLVTSSESLIQWARTGSLMWMTFGLACCAV 76

Query: 68  EMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMG 127
           EMMQ SMPRYD ERFGFAPR SPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMG
Sbjct: 77  EMMQMSMPRYDAERFGFAPRGSPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMG 136

Query: 128 SCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           SCANGGGYYHYSYSVVRGCDR+VPVDIYVPGCPPTAEAL+YG+LLLQKKIRR G ++
Sbjct: 137 SCANGGGYYHYSYSVVRGCDRVVPVDIYVPGCPPTAEALLYGVLLLQKKIRRTGTIE 193


>gi|86749691|ref|YP_486187.1| NADH dehydrogenase subunit B [Rhodopseudomonas palustris HaA2]
 gi|86572719|gb|ABD07276.1| NADH-quinone oxidoreductase, B subunit [Rhodopseudomonas palustris
           HaA2]
          Length = 204

 Score =  296 bits (758), Expect = 9e-79,   Method: Compositional matrix adjust.
 Identities = 137/175 (78%), Positives = 151/175 (86%)

Query: 10  IISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEM 69
           II   +   +   D  F  ++ E++ KGF V + D L+TWARTGSLMWMTFGLACCAVEM
Sbjct: 29  IIDPNTGKPVGADDPFFLDVNRELSDKGFFVAATDDLITWARTGSLMWMTFGLACCAVEM 88

Query: 70  MQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSC 129
           MQ SMPRYD ERFGFAPRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSC
Sbjct: 89  MQLSMPRYDAERFGFAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSC 148

Query: 130 ANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           ANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG++LLQKKIRR G ++
Sbjct: 149 ANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGVMLLQKKIRRTGTIE 203


>gi|163868372|ref|YP_001609581.1| NADH dehydrogenase subunit B [Bartonella tribocorum CIP 105476]
 gi|238055237|sp|A9IUQ3|NUOB_BART1 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|161018028|emb|CAK01586.1| NADH dehydrogenase I, B subunit [Bartonella tribocorum CIP 105476]
          Length = 193

 Score =  296 bits (757), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 136/162 (83%), Positives = 150/162 (92%)

Query: 23  DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82
           D  F  I++E++ KGFLVTS D L+TWARTGSLMWM+FGLACCA+EMMQ SMP YD ERF
Sbjct: 31  DRFFRDINAELSDKGFLVTSADALITWARTGSLMWMSFGLACCAIEMMQCSMPHYDNERF 90

Query: 83  GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142
           G+APRASPRQSDVM+VAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSV
Sbjct: 91  GYAPRASPRQSDVMVVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSV 150

Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           VRGCDRIVPVDIYVPGCPPTAEAL+YGILLLQKKIRR G+++
Sbjct: 151 VRGCDRIVPVDIYVPGCPPTAEALLYGILLLQKKIRRTGSIE 192


>gi|182679352|ref|YP_001833498.1| NADH-quinone oxidoreductase, B subunit [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|238055244|sp|B2IHW6|NUOB_BEII9 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|182635235|gb|ACB96009.1| NADH-quinone oxidoreductase, B subunit [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 180

 Score =  296 bits (757), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 140/184 (76%), Positives = 154/184 (83%), Gaps = 5/184 (2%)

Query: 1   MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTF 60
           MGL    Q ++    +      D  F  I+ ++  KGFLVTS D+L+ WARTGSLMWMTF
Sbjct: 1   MGLIATPQPVVGTPPA-----QDNYFLSINDQLADKGFLVTSTDELINWARTGSLMWMTF 55

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           GLACCAVEMMQ SMPRYD ERFGFAPR SPRQSDVMIVAGTLTNKMA ALR+VYDQMPEP
Sbjct: 56  GLACCAVEMMQMSMPRYDCERFGFAPRGSPRQSDVMIVAGTLTNKMAPALRKVYDQMPEP 115

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP+AEAL+YG+LLLQKKIRR 
Sbjct: 116 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPSAEALLYGVLLLQKKIRRT 175

Query: 181 GNVK 184
           G ++
Sbjct: 176 GTIE 179


>gi|115524527|ref|YP_781438.1| NADH dehydrogenase subunit B [Rhodopseudomonas palustris BisA53]
 gi|122296214|sp|Q07NM6|NUOB2_RHOP5 RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName:
           Full=NADH dehydrogenase I subunit B 2; AltName:
           Full=NDH-1 subunit B 2
 gi|115518474|gb|ABJ06458.1| NADH-quinone oxidoreductase, B subunit [Rhodopseudomonas palustris
           BisA53]
          Length = 200

 Score =  296 bits (757), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 133/162 (82%), Positives = 149/162 (91%)

Query: 23  DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82
           D  F  +++E++ KGF V + D L+TWARTGSLMWMTFGLACCAVEMMQ SMPRYD ERF
Sbjct: 38  DRFFVEVNNELSDKGFFVAATDDLITWARTGSLMWMTFGLACCAVEMMQMSMPRYDAERF 97

Query: 83  GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142
           GFAPRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSY+V
Sbjct: 98  GFAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYAV 157

Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           VRGCDRIVP+DIYVPGCPPTAEAL+YG++LLQKKIRR+G ++
Sbjct: 158 VRGCDRIVPIDIYVPGCPPTAEALLYGVMLLQKKIRRIGTIE 199


>gi|316933892|ref|YP_004108874.1| NADH-quinone oxidoreductase subunit B [Rhodopseudomonas palustris
           DX-1]
 gi|315601606|gb|ADU44141.1| NADH-quinone oxidoreductase, B subunit [Rhodopseudomonas palustris
           DX-1]
          Length = 198

 Score =  296 bits (757), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 136/175 (77%), Positives = 151/175 (86%)

Query: 10  IISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEM 69
           II   +   +   D  F  ++ E++ KGF V + D L+TWARTGSLMWMTFGLACCAVEM
Sbjct: 23  IIDPSTGKPVGANDPFFLNVNRELSDKGFFVAATDDLITWARTGSLMWMTFGLACCAVEM 82

Query: 70  MQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSC 129
           MQ SMPRYD ERFGFAPRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSC
Sbjct: 83  MQLSMPRYDAERFGFAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSC 142

Query: 130 ANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           ANGGGYYHYSYSVVRGCDRIVP+DIYVPGCPPTAEAL+YG++LLQKKIRR G ++
Sbjct: 143 ANGGGYYHYSYSVVRGCDRIVPIDIYVPGCPPTAEALLYGVMLLQKKIRRTGTIE 197


>gi|325292633|ref|YP_004278497.1| NADH dehydrogenase I chain B [Agrobacterium sp. H13-3]
 gi|238065076|sp|A9CJB2|NUOB_AGRT5 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|325060486|gb|ADY64177.1| NADH dehydrogenase I chain B [Agrobacterium sp. H13-3]
          Length = 194

 Score =  296 bits (757), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 140/193 (72%), Positives = 161/193 (83%), Gaps = 9/193 (4%)

Query: 1   MGLTTVNQKIISGQSSCSLEKV--------DADFSRISSEITHKGFLVTSVDQLVTWART 52
           MG++  N  +++ Q    ++          DA F+ I+ E+  KGFLVTS D+L+TWART
Sbjct: 1   MGMSQNNSTLVAPQPKGIIDPATGKPVGSNDAYFTEINDELADKGFLVTSTDELITWART 60

Query: 53  GSLMWMTFGLACCAVE-MMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALR 111
           GSLMWM FGLACCAVE +MQAS PRYD+ERFG APRASPRQSDVMIVAGTLTNKMA ALR
Sbjct: 61  GSLMWMQFGLACCAVEGLMQASGPRYDMERFGVAPRASPRQSDVMIVAGTLTNKMAPALR 120

Query: 112 RVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171
           +VYDQMPEPRYVISMGSCANGGGYYHYSY+VVRGCDR+VPVDIYVPGCPPTAEAL+YG+L
Sbjct: 121 KVYDQMPEPRYVISMGSCANGGGYYHYSYAVVRGCDRVVPVDIYVPGCPPTAEALLYGVL 180

Query: 172 LLQKKIRRVGNVK 184
           LLQKKIRR G ++
Sbjct: 181 LLQKKIRRTGTIE 193


>gi|163850516|ref|YP_001638559.1| NADH-quinone oxidoreductase, B subunit [Methylobacterium extorquens
           PA1]
 gi|218529213|ref|YP_002420029.1| NADH dehydrogenase subunit B [Methylobacterium chloromethanicum
           CM4]
 gi|240137581|ref|YP_002962052.1| NADH-quinone oxidoreductase chain B (NADH dehydrogenase I, chain B)
           [Methylobacterium extorquens AM1]
 gi|254560052|ref|YP_003067147.1| NADH-quinone oxidoreductase subunit B [Methylobacterium extorquens
           DM4]
 gi|238065167|sp|A9W1N2|NUOB_METEP RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|254767795|sp|B7KQ65|NUOB_METC4 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|163662121|gb|ABY29488.1| NADH-quinone oxidoreductase, B subunit [Methylobacterium extorquens
           PA1]
 gi|218521516|gb|ACK82101.1| NADH-quinone oxidoreductase, B subunit [Methylobacterium
           chloromethanicum CM4]
 gi|240007549|gb|ACS38775.1| NADH-quinone oxidoreductase chain B (NADH dehydrogenase I, chain B)
           [Methylobacterium extorquens AM1]
 gi|254267330|emb|CAX23162.1| NADH-quinone oxidoreductase chain B (NADH dehydrogenase I, chain B)
           [Methylobacterium extorquens DM4]
          Length = 195

 Score =  296 bits (757), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 136/177 (76%), Positives = 153/177 (86%)

Query: 8   QKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAV 67
           + II   +   +   D  F  I+ E+  +GFLVTS D+L+ WARTGSLMWMTFGLACCAV
Sbjct: 18  KGIIDPATGRPIGANDPTFLSINDELADRGFLVTSADELINWARTGSLMWMTFGLACCAV 77

Query: 68  EMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMG 127
           EMMQ SMPRYD ERFGFAPR SPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMG
Sbjct: 78  EMMQMSMPRYDCERFGFAPRGSPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMG 137

Query: 128 SCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           SCANGGGYYHYSYSVVRGCDR+VPVDIYVPGCPP+AEAL+YG+LLLQ+KIRR+G ++
Sbjct: 138 SCANGGGYYHYSYSVVRGCDRVVPVDIYVPGCPPSAEALLYGVLLLQRKIRRIGTIE 194


>gi|240850584|ref|YP_002971984.1| NADH dehydrogenase I subunit B [Bartonella grahamii as4aup]
 gi|240267707|gb|ACS51295.1| NADH dehydrogenase I subunit B [Bartonella grahamii as4aup]
          Length = 193

 Score =  296 bits (757), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 135/162 (83%), Positives = 150/162 (92%)

Query: 23  DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82
           D  F  +++E++ KGFLVTS D L+TWARTGSLMWM+FGLACCA+EMMQ SMP YD ERF
Sbjct: 31  DKFFRDLNAELSDKGFLVTSADALITWARTGSLMWMSFGLACCAIEMMQCSMPHYDNERF 90

Query: 83  GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142
           G+APRASPRQSDVM+VAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSV
Sbjct: 91  GYAPRASPRQSDVMVVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSV 150

Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           VRGCDRIVPVDIYVPGCPPTAEAL+YGILLLQKKIRR G+++
Sbjct: 151 VRGCDRIVPVDIYVPGCPPTAEALLYGILLLQKKIRRTGSIE 192


>gi|110633377|ref|YP_673585.1| NADH dehydrogenase subunit B [Mesorhizobium sp. BNC1]
 gi|122966123|sp|Q11JK5|NUOB_MESSB RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|110284361|gb|ABG62420.1| NADH dehydrogenase subunit B [Chelativorans sp. BNC1]
          Length = 190

 Score =  296 bits (757), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 139/178 (78%), Positives = 153/178 (85%)

Query: 7   NQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCA 66
           ++ II   +   +   D  +  I+ E++ KGFLVTS + L+TWARTGSLMWMTFGLACCA
Sbjct: 12  SRGIIDPNTGNPVGANDPFYGAINEELSDKGFLVTSSEALITWARTGSLMWMTFGLACCA 71

Query: 67  VEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISM 126
           VEMM  SMPRYD ERFG APRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISM
Sbjct: 72  VEMMHTSMPRYDAERFGIAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISM 131

Query: 127 GSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           GSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGILLLQKKIRR G ++
Sbjct: 132 GSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILLLQKKIRRTGTIE 189


>gi|90417843|ref|ZP_01225755.1| NADH dehydrogenase I, B subunit [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90337515|gb|EAS51166.1| NADH dehydrogenase I, B subunit [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 194

 Score =  296 bits (757), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 135/162 (83%), Positives = 148/162 (91%)

Query: 23  DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82
           D   + +++E+  KGFLVTS + L+ WARTGSLMWMTFGLACCAVEMMQ SMPRYD ERF
Sbjct: 32  DPFVTDVNNELADKGFLVTSTEDLIQWARTGSLMWMTFGLACCAVEMMQMSMPRYDAERF 91

Query: 83  GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142
           GFAPRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSV
Sbjct: 92  GFAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSV 151

Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           VRGCDR+VPVDIYVPGCPPTAEAL+YG+LLLQKKIRR G ++
Sbjct: 152 VRGCDRVVPVDIYVPGCPPTAEALLYGVLLLQKKIRRTGTIE 193


>gi|23006634|ref|ZP_00048864.1| COG0377: NADH:ubiquinone oxidoreductase 20 kD subunit and related
           Fe-S oxidoreductases [Magnetospirillum magnetotacticum
           MS-1]
          Length = 195

 Score =  295 bits (756), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 136/177 (76%), Positives = 153/177 (86%)

Query: 8   QKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAV 67
           + II   +   +   D  F  I+ E+  +GFLVTS D+L+ WARTGSLMWMTFGLACCAV
Sbjct: 18  KGIIDPATGRPIGANDPTFLSINDELADRGFLVTSADELINWARTGSLMWMTFGLACCAV 77

Query: 68  EMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMG 127
           EMMQ SMPRYD ERFGFAPR SPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMG
Sbjct: 78  EMMQMSMPRYDCERFGFAPRGSPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMG 137

Query: 128 SCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           SCANGGGYYHYSYSVVRGCDR+VPVDIYVPGCPP+AEAL+YG+LLLQ+KIRR+G ++
Sbjct: 138 SCANGGGYYHYSYSVVRGCDRVVPVDIYVPGCPPSAEALLYGVLLLQRKIRRLGTIE 194


>gi|39936016|ref|NP_948292.1| NADH dehydrogenase subunit B [Rhodopseudomonas palustris CGA009]
 gi|192291671|ref|YP_001992276.1| NADH dehydrogenase subunit B [Rhodopseudomonas palustris TIE-1]
 gi|81562349|sp|Q6N5M3|NUOB1_RHOPA RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName:
           Full=NADH dehydrogenase I subunit B 1; AltName:
           Full=NDH-1 subunit B 1
 gi|238065014|sp|B3Q7N5|NUOB1_RHOPT RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName:
           Full=NADH dehydrogenase I subunit B 1; AltName:
           Full=NDH-1 subunit B 1
 gi|39649870|emb|CAE28392.1| NADH-ubiquinone dehydrogenase chain B [Rhodopseudomonas palustris
           CGA009]
 gi|192285420|gb|ACF01801.1| NADH-quinone oxidoreductase, B subunit [Rhodopseudomonas palustris
           TIE-1]
          Length = 198

 Score =  295 bits (755), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 136/175 (77%), Positives = 151/175 (86%)

Query: 10  IISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEM 69
           II   +   +   D  F  ++ E++ KGF V + D L+TWARTGSLMWMTFGLACCAVEM
Sbjct: 23  IIDPNTGRPVGADDPFFLNVNRELSDKGFFVAATDDLITWARTGSLMWMTFGLACCAVEM 82

Query: 70  MQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSC 129
           MQ SMPRYD ERFGFAPRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSC
Sbjct: 83  MQLSMPRYDAERFGFAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSC 142

Query: 130 ANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           ANGGGYYHYSYSVVRGCDRIVP+DIYVPGCPPTAEAL+YG++LLQKKIRR G ++
Sbjct: 143 ANGGGYYHYSYSVVRGCDRIVPIDIYVPGCPPTAEALLYGVMLLQKKIRRTGTIE 197


>gi|329850728|ref|ZP_08265573.1| NADH-quinone oxidoreductase subunit B [Asticcacaulis biprosthecum
           C19]
 gi|328841043|gb|EGF90614.1| NADH-quinone oxidoreductase subunit B [Asticcacaulis biprosthecum
           C19]
          Length = 184

 Score =  295 bits (754), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 133/162 (82%), Positives = 149/162 (91%)

Query: 23  DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82
           D  F  +S+E+  KGFLV S D ++TWARTGSLMWMTFGLACCAVEMMQASMPRYD+ERF
Sbjct: 22  DKFFESVSAELDAKGFLVASADDVITWARTGSLMWMTFGLACCAVEMMQASMPRYDMERF 81

Query: 83  GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142
           G APRASPRQSD+MIVAGTLTNKMA ALR+VYDQMP+PRYV+SMGSCANGGGYYHYSYSV
Sbjct: 82  GMAPRASPRQSDLMIVAGTLTNKMAPALRKVYDQMPDPRYVLSMGSCANGGGYYHYSYSV 141

Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           VRGCDRIVPVD+YVPGCPP+AEAL+YG+L LQKKIRR GN++
Sbjct: 142 VRGCDRIVPVDVYVPGCPPSAEALLYGLLQLQKKIRRTGNIR 183


>gi|91977356|ref|YP_570015.1| NADH dehydrogenase subunit B [Rhodopseudomonas palustris BisB5]
 gi|122969140|sp|Q135X5|NUOB2_RHOPS RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName:
           Full=NADH dehydrogenase I subunit B 2; AltName:
           Full=NDH-1 subunit B 2
 gi|91683812|gb|ABE40114.1| NADH-quinone oxidoreductase, B subunit [Rhodopseudomonas palustris
           BisB5]
          Length = 199

 Score =  295 bits (754), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 136/175 (77%), Positives = 151/175 (86%)

Query: 10  IISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEM 69
           II   +   +   D  F  ++ E++ KGF V + D L+TWARTGSLMWMTFGLACCAVEM
Sbjct: 24  IIDPNTGKPVGADDPFFLGVNRELSDKGFFVAATDDLITWARTGSLMWMTFGLACCAVEM 83

Query: 70  MQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSC 129
           MQ SMPRYD ERFGFAPRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSC
Sbjct: 84  MQLSMPRYDAERFGFAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSC 143

Query: 130 ANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           ANGGGYYHYSYSVVRGCDRIVP+DIYVPGCPPTAEAL+YG++LLQKKIRR G ++
Sbjct: 144 ANGGGYYHYSYSVVRGCDRIVPIDIYVPGCPPTAEALLYGVMLLQKKIRRTGTIE 198


>gi|90423901|ref|YP_532271.1| NADH dehydrogenase subunit B [Rhodopseudomonas palustris BisB18]
 gi|122476336|sp|Q215I4|NUOB1_RHOPB RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName:
           Full=NADH dehydrogenase I subunit B 1; AltName:
           Full=NDH-1 subunit B 1
 gi|90105915|gb|ABD87952.1| NADH-quinone oxidoreductase, B subunit [Rhodopseudomonas palustris
           BisB18]
          Length = 201

 Score =  294 bits (753), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 133/162 (82%), Positives = 147/162 (90%)

Query: 23  DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82
           D  F  +++E+  KGF V + D L+TWARTGSLMWMTFGLACCAVEMMQ SMPRYD ERF
Sbjct: 39  DRFFLEVNNELADKGFFVAATDDLITWARTGSLMWMTFGLACCAVEMMQMSMPRYDAERF 98

Query: 83  GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142
           GFAPRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSY+V
Sbjct: 99  GFAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYAV 158

Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           VRGCDRIVP+DIYVPGCPPTAEAL+YG++LLQKKIRR G ++
Sbjct: 159 VRGCDRIVPIDIYVPGCPPTAEALLYGVMLLQKKIRRTGTIE 200


>gi|304391399|ref|ZP_07373341.1| NADH-quinone oxidoreductase subunit b 1 [Ahrensia sp. R2A130]
 gi|303295628|gb|EFL89986.1| NADH-quinone oxidoreductase subunit b 1 [Ahrensia sp. R2A130]
          Length = 191

 Score =  294 bits (753), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 134/162 (82%), Positives = 147/162 (90%)

Query: 23  DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82
           D  F  I++E+  KGF+VT+ D L+ W+RTGSLMWMTFGLACCAVEMMQ SMPRYD ERF
Sbjct: 29  DPFFGEINNELADKGFIVTTTDDLINWSRTGSLMWMTFGLACCAVEMMQMSMPRYDSERF 88

Query: 83  GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142
           G APRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSV
Sbjct: 89  GIAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSV 148

Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           VRGCDRIVPVDIYVPGCPP+AEAL+YG+LLLQKKIRR G ++
Sbjct: 149 VRGCDRIVPVDIYVPGCPPSAEALLYGVLLLQKKIRRTGTIE 190


>gi|114707368|ref|ZP_01440265.1| NADH-ubiquinone oxidoreductase chain B protein [Fulvimarina pelagi
           HTCC2506]
 gi|114537249|gb|EAU40376.1| NADH-ubiquinone oxidoreductase chain B protein [Fulvimarina pelagi
           HTCC2506]
          Length = 194

 Score =  293 bits (750), Expect = 8e-78,   Method: Compositional matrix adjust.
 Identities = 133/162 (82%), Positives = 146/162 (90%)

Query: 23  DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82
           D   + I+ E+  KGFLVTS D L+ WAR GSLMWMTFGLACCAVEMMQ SMPRYD ERF
Sbjct: 32  DPFVTAINDELADKGFLVTSTDDLIQWARNGSLMWMTFGLACCAVEMMQMSMPRYDAERF 91

Query: 83  GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142
           GFAPRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSV
Sbjct: 92  GFAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSV 151

Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           VRGCDR++PVDIYVPGCPP+AEAL+YG++LLQKKIRR G ++
Sbjct: 152 VRGCDRVIPVDIYVPGCPPSAEALLYGVMLLQKKIRRTGTIE 193


>gi|315499789|ref|YP_004088592.1| NADH-quinone oxidoreductase, b subunit [Asticcacaulis excentricus
           CB 48]
 gi|315417801|gb|ADU14441.1| NADH-quinone oxidoreductase, B subunit [Asticcacaulis excentricus
           CB 48]
          Length = 186

 Score =  293 bits (749), Expect = 8e-78,   Method: Compositional matrix adjust.
 Identities = 133/162 (82%), Positives = 148/162 (91%)

Query: 23  DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82
           D  F  +SSE+  KGFLV S D ++TWARTGSLMWMTFGLACCAVEMMQASMPRYD+ERF
Sbjct: 24  DKFFEAVSSELNEKGFLVASADDVITWARTGSLMWMTFGLACCAVEMMQASMPRYDMERF 83

Query: 83  GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142
           G APRASPRQSD+MIVAGTLTNKMA ALR+VYDQMP+PRYV+SMGSCANGGGYYHYSYSV
Sbjct: 84  GMAPRASPRQSDLMIVAGTLTNKMAPALRKVYDQMPDPRYVLSMGSCANGGGYYHYSYSV 143

Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           VRGCDRIVPVD+YVPGCPP+AEAL+YG+L LQKKIRR G ++
Sbjct: 144 VRGCDRIVPVDVYVPGCPPSAEALLYGLLQLQKKIRRNGTIR 185


>gi|86358166|ref|YP_470058.1| NADH dehydrogenase subunit B [Rhizobium etli CFN 42]
 gi|123511609|sp|Q2K755|NUOB2_RHIEC RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName:
           Full=NADH dehydrogenase I subunit B 2; AltName:
           Full=NDH-1 subunit B 2
 gi|86282268|gb|ABC91331.1| NADH-ubiquinone oxidoreductase chain B protein [Rhizobium etli CFN
           42]
          Length = 186

 Score =  293 bits (749), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 134/162 (82%), Positives = 149/162 (91%)

Query: 23  DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82
           D     I++E+  KGFLVTS D+L+TWARTGSLMWMTFGLACCA+EMMQ SMPRYD+ERF
Sbjct: 24  DPTMGTINAELADKGFLVTSTDELITWARTGSLMWMTFGLACCAIEMMQMSMPRYDIERF 83

Query: 83  GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142
           G APRASPRQSD+MIVAGTL NKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSV
Sbjct: 84  GVAPRASPRQSDLMIVAGTLCNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSV 143

Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           VRGCDR+VPVDIYVPGCPPTAEAL+YGILLLQ+KIRR G+++
Sbjct: 144 VRGCDRVVPVDIYVPGCPPTAEALLYGILLLQRKIRRNGSIE 185


>gi|154253664|ref|YP_001414488.1| NADH-quinone oxidoreductase subunit B [Parvibaculum lavamentivorans
           DS-1]
 gi|238065187|sp|A7HY48|NUOB_PARL1 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|154157614|gb|ABS64831.1| NADH-quinone oxidoreductase, B subunit [Parvibaculum
           lavamentivorans DS-1]
          Length = 191

 Score =  292 bits (747), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 139/189 (73%), Positives = 157/189 (83%), Gaps = 6/189 (3%)

Query: 1   MGLTTVNQKI------ISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGS 54
           MG+T  ++ I      +   +S    + DA F + + ++  KGF++T+VD L+ W+RTGS
Sbjct: 1   MGVTNPDKVISNTPGVVDPATSVPAWQDDAFFRQATDQLADKGFVLTTVDDLINWSRTGS 60

Query: 55  LMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVY 114
           LMWMTFGLACCAVEMMQ SMPRYD ERFG APRASPRQSDVMIVAGTLTNKMA ALR+VY
Sbjct: 61  LMWMTFGLACCAVEMMQTSMPRYDAERFGVAPRASPRQSDVMIVAGTLTNKMAPALRKVY 120

Query: 115 DQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQ 174
           DQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQ
Sbjct: 121 DQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILALQ 180

Query: 175 KKIRRVGNV 183
           KKIRR G +
Sbjct: 181 KKIRRTGTL 189


>gi|83858414|ref|ZP_00951936.1| NADH dehydrogenase beta subunit [Oceanicaulis alexandrii HTCC2633]
 gi|83853237|gb|EAP91089.1| NADH dehydrogenase beta subunit [Oceanicaulis alexandrii HTCC2633]
          Length = 187

 Score =  291 bits (746), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 135/165 (81%), Positives = 147/165 (89%)

Query: 20  EKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDL 79
           +K D  F  +S  +  KGFLV + D L+TWARTGSLMWMTFGLACCAVEMMQASMPRYD+
Sbjct: 22  KKHDPFFDGVSDALADKGFLVAAADDLITWARTGSLMWMTFGLACCAVEMMQASMPRYDV 81

Query: 80  ERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS 139
           ER G APR SPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYS
Sbjct: 82  ERLGAAPRGSPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYS 141

Query: 140 YSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           YSVVRGCDRIVP+DIYVPGCPPTAEAL+YGIL LQKKIRR G+++
Sbjct: 142 YSVVRGCDRIVPIDIYVPGCPPTAEALVYGILQLQKKIRREGSIE 186


>gi|241518517|ref|YP_002979145.1| NADH-quinone oxidoreductase, B subunit [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240862930|gb|ACS60594.1| NADH-quinone oxidoreductase, B subunit [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 185

 Score =  291 bits (745), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 134/162 (82%), Positives = 147/162 (90%)

Query: 23  DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82
           D     I++E+  KGFLVTS D+L+TWARTGSLMWMTFGLACCA+EMMQ SMPRYD+ERF
Sbjct: 23  DPTMGMINAELADKGFLVTSTDELITWARTGSLMWMTFGLACCAIEMMQMSMPRYDVERF 82

Query: 83  GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142
           G APR SPRQSD+MIVAGTL NKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSV
Sbjct: 83  GVAPRGSPRQSDLMIVAGTLCNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142

Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           VRGCDR+VPVDIYVPGCPPTAEAL+YGILLLQKKIRR G ++
Sbjct: 143 VRGCDRVVPVDIYVPGCPPTAEALLYGILLLQKKIRRNGTIE 184


>gi|218463554|ref|ZP_03503645.1| NADH dehydrogenase subunit B [Rhizobium etli Kim 5]
          Length = 186

 Score =  291 bits (744), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 134/162 (82%), Positives = 148/162 (91%)

Query: 23  DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82
           D     I++E+  KGFLVTS D+L+TWARTGSLMWMTFGLACCA+EMMQ SMPRYD+ERF
Sbjct: 24  DPMMGTINAELADKGFLVTSTDELITWARTGSLMWMTFGLACCAIEMMQMSMPRYDIERF 83

Query: 83  GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142
           G APR SPRQSD+MIVAGTL NKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSV
Sbjct: 84  GVAPRGSPRQSDLMIVAGTLCNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSV 143

Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           VRGCDRIVPVDIYVPGCPPTAEAL+YGILLLQ+KIRR G+++
Sbjct: 144 VRGCDRIVPVDIYVPGCPPTAEALLYGILLLQRKIRRNGSIE 185


>gi|296444795|ref|ZP_06886758.1| NADH-quinone oxidoreductase, B subunit [Methylosinus trichosporium
           OB3b]
 gi|296257743|gb|EFH04807.1| NADH-quinone oxidoreductase, B subunit [Methylosinus trichosporium
           OB3b]
          Length = 194

 Score =  290 bits (743), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 138/193 (71%), Positives = 160/193 (82%), Gaps = 9/193 (4%)

Query: 1   MGLTTVNQKIISGQSSCSL------EKVDAD---FSRISSEITHKGFLVTSVDQLVTWAR 51
           MGL T     +   S+  L      + V AD   +  ++ E+  KGF+VT+ D ++ WAR
Sbjct: 1   MGLITRQSPTLVAPSAKGLVDPRTGKPVGADDPFYLGLNDELADKGFVVTATDDIINWAR 60

Query: 52  TGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALR 111
           TGSLMWMTFGLACCAVEM+QA+MPRYDLERFGFAPRASPRQSDV+I+AGTLTNKMA ALR
Sbjct: 61  TGSLMWMTFGLACCAVEMIQAAMPRYDLERFGFAPRASPRQSDVIIIAGTLTNKMAPALR 120

Query: 112 RVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171
           +VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI+PVDIYVPGCPP+AEAL+YG+L
Sbjct: 121 KVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPSAEALVYGVL 180

Query: 172 LLQKKIRRVGNVK 184
           LLQKKIRR G ++
Sbjct: 181 LLQKKIRRSGTIE 193


>gi|323138146|ref|ZP_08073219.1| NADH-quinone oxidoreductase, B subunit [Methylocystis sp. ATCC
           49242]
 gi|322396608|gb|EFX99136.1| NADH-quinone oxidoreductase, B subunit [Methylocystis sp. ATCC
           49242]
          Length = 194

 Score =  290 bits (743), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 130/162 (80%), Positives = 148/162 (91%)

Query: 23  DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82
           D  F +I+ E+  KGF VT+ D ++ WARTGSLMWMTFGLACCAVEM+QA+MPRYDLERF
Sbjct: 32  DPFFLQINEELADKGFFVTATDDVINWARTGSLMWMTFGLACCAVEMIQAAMPRYDLERF 91

Query: 83  GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142
           GFAPRASPRQSD +I+AGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSV
Sbjct: 92  GFAPRASPRQSDCIIIAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSV 151

Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           VRGCDRI+PVD+YVPGCPP+AEAL+YG+LLLQKKIRR G ++
Sbjct: 152 VRGCDRIIPVDVYVPGCPPSAEALVYGMLLLQKKIRRTGTIE 193


>gi|262277300|ref|ZP_06055093.1| NADH-quinone oxidoreductase subunit b (nadhdehydrogenase i subunit
           b) (ndh-1 subunit b) [alpha proteobacterium HIMB114]
 gi|262224403|gb|EEY74862.1| NADH-quinone oxidoreductase subunit b (nadhdehydrogenase i subunit
           b) (ndh-1 subunit b) [alpha proteobacterium HIMB114]
          Length = 173

 Score =  290 bits (741), Expect = 8e-77,   Method: Compositional matrix adjust.
 Identities = 132/166 (79%), Positives = 148/166 (89%)

Query: 19  LEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78
           L+++  +F  ++ E + KGF+  + D L+ WARTGSL WMTFGLACCAVEMMQASMPRYD
Sbjct: 7   LDQIPQEFREVAEEFSEKGFVTIASDTLINWARTGSLHWMTFGLACCAVEMMQASMPRYD 66

Query: 79  LERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY 138
           LERFG APRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHY
Sbjct: 67  LERFGAAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHY 126

Query: 139 SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           SYSVVRGCDRIVPVDIYVPGCPP+AEAL+Y IL LQKKIRR G+++
Sbjct: 127 SYSVVRGCDRIVPVDIYVPGCPPSAEALLYAILQLQKKIRREGSLQ 172


>gi|13471406|ref|NP_102972.1| NADH dehydrogenase subunit B [Mesorhizobium loti MAFF303099]
 gi|14022148|dbj|BAB48758.1| NADH-ubiquinone dehydrogenase chain B 1 [Mesorhizobium loti
           MAFF303099]
          Length = 200

 Score =  289 bits (740), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 135/177 (76%), Positives = 153/177 (86%)

Query: 8   QKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAV 67
           + II   +   + + D  F  I++E+  KGFLVTS + L+TWAR+GSLM+MTFGLACCAV
Sbjct: 23  KGIIDPNTGRPVGEDDPFFLEINNELADKGFLVTSTEALITWARSGSLMFMTFGLACCAV 82

Query: 68  EMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMG 127
           EM+  SMPRYD ERFG APRASPRQSD+MIVAGTLTNKMA ALR+VYDQMPEPRYVISMG
Sbjct: 83  EMIHTSMPRYDSERFGVAPRASPRQSDIMIVAGTLTNKMAPALRKVYDQMPEPRYVISMG 142

Query: 128 SCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           SCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP+AEAL+YGILLLQKKIRR G ++
Sbjct: 143 SCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPSAEALLYGILLLQKKIRRTGTIE 199


>gi|260462231|ref|ZP_05810475.1| NADH-quinone oxidoreductase, B subunit [Mesorhizobium opportunistum
           WSM2075]
 gi|259032091|gb|EEW33358.1| NADH-quinone oxidoreductase, B subunit [Mesorhizobium opportunistum
           WSM2075]
          Length = 193

 Score =  289 bits (739), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 134/177 (75%), Positives = 153/177 (86%)

Query: 8   QKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAV 67
           + II   +   + + D  F  I++E+  KGFLVTS + L+TWAR+GSLM+MTFGLACCAV
Sbjct: 16  KGIIDPNTGKPVGQDDPFFLEINNELADKGFLVTSTEALITWARSGSLMFMTFGLACCAV 75

Query: 68  EMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMG 127
           EM+  SMPRYD ERFG APRASPRQSD+MIVAGTLTNKMA ALR+VYDQMPEPRYVISMG
Sbjct: 76  EMIHTSMPRYDSERFGVAPRASPRQSDIMIVAGTLTNKMAPALRKVYDQMPEPRYVISMG 135

Query: 128 SCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           SCANGGGYYHYSYSVVRGCDR+VPVDIYVPGCPP+AEAL+YGILLLQKKIRR G ++
Sbjct: 136 SCANGGGYYHYSYSVVRGCDRVVPVDIYVPGCPPSAEALLYGILLLQKKIRRTGTIE 192


>gi|319782982|ref|YP_004142458.1| NADH-quinone oxidoreductase, subunit beta [Mesorhizobium ciceri
           biovar biserrulae WSM1271]
 gi|218528069|sp|Q98KQ6|NUOB_RHILO RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|317168870|gb|ADV12408.1| NADH-quinone oxidoreductase, B subunit [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 193

 Score =  289 bits (739), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 135/177 (76%), Positives = 153/177 (86%)

Query: 8   QKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAV 67
           + II   +   + + D  F  I++E+  KGFLVTS + L+TWAR+GSLM+MTFGLACCAV
Sbjct: 16  KGIIDPNTGRPVGEDDPFFLEINNELADKGFLVTSTEALITWARSGSLMFMTFGLACCAV 75

Query: 68  EMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMG 127
           EM+  SMPRYD ERFG APRASPRQSD+MIVAGTLTNKMA ALR+VYDQMPEPRYVISMG
Sbjct: 76  EMIHTSMPRYDSERFGVAPRASPRQSDIMIVAGTLTNKMAPALRKVYDQMPEPRYVISMG 135

Query: 128 SCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           SCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP+AEAL+YGILLLQKKIRR G ++
Sbjct: 136 SCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPSAEALLYGILLLQKKIRRTGTIE 192


>gi|330813983|ref|YP_004358222.1| NADH-ubiquinone oxidoreductase chain B [Candidatus Pelagibacter sp.
           IMCC9063]
 gi|327487078|gb|AEA81483.1| NADH-ubiquinone oxidoreductase chain B [Candidatus Pelagibacter sp.
           IMCC9063]
          Length = 175

 Score =  288 bits (738), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 132/167 (79%), Positives = 147/167 (88%)

Query: 18  SLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRY 77
            L+ +  +F  ++ E T KGF+    D+L+ WARTGSL WMTFGLACCAVEMMQ SMPRY
Sbjct: 8   KLKDIPKEFREVAEEFTEKGFVTIGSDRLINWARTGSLHWMTFGLACCAVEMMQTSMPRY 67

Query: 78  DLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137
           DLERFG APRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYH
Sbjct: 68  DLERFGAAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYH 127

Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           YSYSVVRGCD+IVPVDIYVPGCPP+AEAL+YGIL LQKKIRR G+++
Sbjct: 128 YSYSVVRGCDKIVPVDIYVPGCPPSAEALLYGILQLQKKIRREGSLQ 174


>gi|222148275|ref|YP_002549232.1| NADH dehydrogenase subunit B [Agrobacterium vitis S4]
 gi|238065049|sp|B9JVE6|NUOB_AGRVS RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|221735263|gb|ACM36226.1| NADH ubiqionone oxidoreductase chain B [Agrobacterium vitis S4]
          Length = 195

 Score =  288 bits (737), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 134/160 (83%), Positives = 145/160 (90%), Gaps = 1/160 (0%)

Query: 26  FSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVE-MMQASMPRYDLERFGF 84
           F  I+ E+  KGFLVTS   L+TWARTGSLMWM FGLACCAVE +MQAS PRYD+ERFG 
Sbjct: 35  FGEINDELADKGFLVTSTQALITWARTGSLMWMQFGLACCAVEGLMQASGPRYDMERFGV 94

Query: 85  APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR 144
           APRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSVVR
Sbjct: 95  APRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR 154

Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           GCDR+VPVDIYVPGCPPTAEAL+YG+LLLQKKIRR G ++
Sbjct: 155 GCDRVVPVDIYVPGCPPTAEALLYGVLLLQKKIRRTGTIE 194


>gi|302383046|ref|YP_003818869.1| NADH-quinone oxidoreductase subunit beta [Brevundimonas
           subvibrioides ATCC 15264]
 gi|302193674|gb|ADL01246.1| NADH-quinone oxidoreductase, B subunit [Brevundimonas subvibrioides
           ATCC 15264]
          Length = 193

 Score =  288 bits (737), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 131/161 (81%), Positives = 145/161 (90%)

Query: 23  DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82
           D  F  +++EI  +GFL  S+D ++ WARTGSLMWMTFGLACCAVEM+QASMPRYDLERF
Sbjct: 31  DKFFEAVNTEIAEQGFLTASLDDVINWARTGSLMWMTFGLACCAVEMIQASMPRYDLERF 90

Query: 83  GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142
           G APRASPRQSD+MIVAGTLTNKMA ALR+VYDQMP+PRYV+SMGSCANGGGYYHYSYSV
Sbjct: 91  GMAPRASPRQSDLMIVAGTLTNKMAPALRKVYDQMPDPRYVLSMGSCANGGGYYHYSYSV 150

Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           VRGCDRIVPVD YVPGCPPTAEALIYG+L LQKKIRR G +
Sbjct: 151 VRGCDRIVPVDAYVPGCPPTAEALIYGLLQLQKKIRRTGTI 191


>gi|260428201|ref|ZP_05782180.1| NADH-quinone oxidoreductase subunit b [Citreicella sp. SE45]
 gi|260422693|gb|EEX15944.1| NADH-quinone oxidoreductase subunit b [Citreicella sp. SE45]
          Length = 175

 Score =  286 bits (732), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 130/155 (83%), Positives = 143/155 (92%)

Query: 29  ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88
           ++ E+  KGFL+TSVD ++ WARTGSL WMTFGLACCA+EMMQ SMPRYDLERFG APRA
Sbjct: 19  LNRELQDKGFLLTSVDDVINWARTGSLHWMTFGLACCAIEMMQTSMPRYDLERFGTAPRA 78

Query: 89  SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 148
           SPRQSD+MIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR
Sbjct: 79  SPRQSDLMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 138

Query: 149 IVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           IVPVD+YVPGCPPTAEAL+YGI+ LQKKIRR G +
Sbjct: 139 IVPVDVYVPGCPPTAEALLYGIMALQKKIRRTGTI 173


>gi|312116344|ref|YP_004013940.1| NADH-quinone oxidoreductase subunit beta [Rhodomicrobium vannielii
           ATCC 17100]
 gi|311221473|gb|ADP72841.1| NADH-quinone oxidoreductase, B subunit [Rhodomicrobium vannielii
           ATCC 17100]
          Length = 184

 Score =  286 bits (731), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 128/160 (80%), Positives = 147/160 (91%)

Query: 25  DFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF 84
           DF  +++++  KGFLVTS + ++ WARTGSLMWMTFGLACCAVEM+Q SMPRYDLERFG 
Sbjct: 24  DFDGLNAQLADKGFLVTSTEDVINWARTGSLMWMTFGLACCAVEMIQVSMPRYDLERFGT 83

Query: 85  APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR 144
           APRASPRQSD+MIVAGTL NKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSVVR
Sbjct: 84  APRASPRQSDLMIVAGTLCNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR 143

Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           GCDR+VPVD+Y+PGCPP+AEAL+YGI+LLQKKIRR G ++
Sbjct: 144 GCDRVVPVDVYIPGCPPSAEALLYGIMLLQKKIRRTGTIE 183


>gi|126461943|ref|YP_001043057.1| NADH dehydrogenase subunit B [Rhodobacter sphaeroides ATCC 17029]
 gi|218528014|sp|A3PIW9|NUOB1_RHOS1 RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName:
           Full=NADH dehydrogenase I subunit B 1; AltName:
           Full=NDH-1 subunit B 1
 gi|126103607|gb|ABN76285.1| NADH-quinone oxidoreductase, B subunit [Rhodobacter sphaeroides
           ATCC 17029]
          Length = 176

 Score =  286 bits (731), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 131/161 (81%), Positives = 143/161 (88%)

Query: 23  DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82
           D D   ++ E+  KGFL+T+ + L+ WARTGSL WMTFGLACCAVEMM  SMPRYD+ERF
Sbjct: 14  DYDTQSLNRELQDKGFLLTTTEDLINWARTGSLHWMTFGLACCAVEMMHTSMPRYDVERF 73

Query: 83  GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142
           G APRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSV
Sbjct: 74  GVAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSV 133

Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           VRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQ+KIRR G +
Sbjct: 134 VRGCDRIVPVDIYVPGCPPTAEALLYGILQLQRKIRRTGTI 174


>gi|149202673|ref|ZP_01879645.1| NADH dehydrogenase subunit B [Roseovarius sp. TM1035]
 gi|149143955|gb|EDM31989.1| NADH dehydrogenase subunit B [Roseovarius sp. TM1035]
          Length = 177

 Score =  286 bits (731), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 129/155 (83%), Positives = 143/155 (92%)

Query: 29  ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88
           +++E+  KGFL+TS + ++ WARTGSL WMTFGLACCAVEMM  +MPRYD+ERFGFAPRA
Sbjct: 21  LNAELQDKGFLLTSTEDIINWARTGSLHWMTFGLACCAVEMMHTAMPRYDVERFGFAPRA 80

Query: 89  SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 148
           SPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR
Sbjct: 81  SPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 140

Query: 149 IVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           IVPVDIYVPGCPPTAEAL+YGIL LQ+KIRR G +
Sbjct: 141 IVPVDIYVPGCPPTAEALVYGILQLQRKIRRTGTI 175


>gi|77463071|ref|YP_352575.1| NADH dehydrogenase subunit B [Rhodobacter sphaeroides 2.4.1]
 gi|221638927|ref|YP_002525189.1| NADH dehydrogenase subunit B [Rhodobacter sphaeroides KD131]
 gi|332557944|ref|ZP_08412266.1| NADH dehydrogenase subunit B [Rhodobacter sphaeroides WS8N]
 gi|123592237|sp|Q3J3G0|NUOB1_RHOS4 RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName:
           Full=NADH dehydrogenase I subunit B 1; AltName:
           Full=NDH-1 subunit B 1
 gi|238065016|sp|B9KQW1|NUOB1_RHOSK RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName:
           Full=NADH dehydrogenase I subunit B 1; AltName:
           Full=NDH-1 subunit B 1
 gi|77387489|gb|ABA78674.1| NADH dehydrogenase-ubiquinone oxidoreductase, chain B [Rhodobacter
           sphaeroides 2.4.1]
 gi|221159708|gb|ACM00688.1| NADH dehydrogenase I, B subunit [Rhodobacter sphaeroides KD131]
 gi|332275656|gb|EGJ20971.1| NADH dehydrogenase subunit B [Rhodobacter sphaeroides WS8N]
          Length = 174

 Score =  285 bits (730), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 131/161 (81%), Positives = 143/161 (88%)

Query: 23  DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82
           D D   ++ E+  KGFL+T+ + L+ WARTGSL WMTFGLACCAVEMM  SMPRYD+ERF
Sbjct: 12  DYDTQSLNRELQDKGFLLTTTEDLINWARTGSLHWMTFGLACCAVEMMHTSMPRYDVERF 71

Query: 83  GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142
           G APRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSV
Sbjct: 72  GVAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSV 131

Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           VRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQ+KIRR G +
Sbjct: 132 VRGCDRIVPVDIYVPGCPPTAEALLYGILQLQRKIRRTGTI 172


>gi|304322207|ref|YP_003855850.1| NADH dehydrogenase subunit beta [Parvularcula bermudensis HTCC2503]
 gi|303301109|gb|ADM10708.1| NADH dehydrogenase beta subunit [Parvularcula bermudensis HTCC2503]
          Length = 226

 Score =  285 bits (729), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 128/162 (79%), Positives = 144/162 (88%)

Query: 23  DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82
           D  F+ ++ E+  +GF+    D ++ WARTGSLMWMTFGLACCAVEMMQASMPRYD+ERF
Sbjct: 64  DPFFTSLNRELADQGFITAPADAVINWARTGSLMWMTFGLACCAVEMMQASMPRYDMERF 123

Query: 83  GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142
           G APRASPRQSD+MIVAGTLTNKMA ALR+VYDQMP PRYV+SMGSCANGGGYYHYSYSV
Sbjct: 124 GMAPRASPRQSDLMIVAGTLTNKMAPALRKVYDQMPAPRYVVSMGSCANGGGYYHYSYSV 183

Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           VRGCDRIVPVDIYVPGCPPTAEALIYG+L LQKK+RR G ++
Sbjct: 184 VRGCDRIVPVDIYVPGCPPTAEALIYGLLQLQKKMRREGTIR 225


>gi|56697623|ref|YP_167992.1| NADH dehydrogenase subunit B [Ruegeria pomeroyi DSS-3]
 gi|56679360|gb|AAV96026.1| NADH dehydrogenase I, B subunit [Ruegeria pomeroyi DSS-3]
          Length = 184

 Score =  285 bits (729), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 130/174 (74%), Positives = 151/174 (86%), Gaps = 1/174 (0%)

Query: 10  IISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEM 69
           +++G ++  ++K +     +++E+  KGFL+TS + ++ WARTGSL WMTFGLACCAVEM
Sbjct: 10  VMTGANTAGVDK-EVATQALNAELQDKGFLLTSTEDIINWARTGSLHWMTFGLACCAVEM 68

Query: 70  MQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSC 129
           M  SMPRYD ERFG APRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSC
Sbjct: 69  MHTSMPRYDAERFGIAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSC 128

Query: 130 ANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           ANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG+L LQ+KIRR G +
Sbjct: 129 ANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGLLQLQRKIRRTGTI 182


>gi|197105267|ref|YP_002130644.1| NADH dehydrogenase I, B subunit [Phenylobacterium zucineum HLK1]
 gi|238065189|sp|B4RCM8|NUOB_PHEZH RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|196478687|gb|ACG78215.1| NADH dehydrogenase I, B subunit [Phenylobacterium zucineum HLK1]
          Length = 193

 Score =  285 bits (728), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 129/161 (80%), Positives = 143/161 (88%)

Query: 23  DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82
           D  F  +S  +  KGF+  + D L+TWARTGSLMWMTFGLACCAVEMMQASMPRYDLER+
Sbjct: 31  DPYFDGVSQRLADKGFVTAAADDLITWARTGSLMWMTFGLACCAVEMMQASMPRYDLERY 90

Query: 83  GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142
           GFAPRASPRQSDVMIVAGTL NKMA ALR+VYDQMPEPRYVISMGSCANGGGYY++SYS 
Sbjct: 91  GFAPRASPRQSDVMIVAGTLVNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYYFSYST 150

Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           VRGCDR+VPVD+YVPGCPPTAEAL+YG+L LQKKIRR G +
Sbjct: 151 VRGCDRVVPVDVYVPGCPPTAEALVYGVLQLQKKIRRTGTI 191


>gi|218528064|sp|Q5LPR4|NUOB_SILPO RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
          Length = 177

 Score =  285 bits (728), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 130/174 (74%), Positives = 151/174 (86%), Gaps = 1/174 (0%)

Query: 10  IISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEM 69
           +++G ++  ++K +     +++E+  KGFL+TS + ++ WARTGSL WMTFGLACCAVEM
Sbjct: 3   VMTGANTAGVDK-EVATQALNAELQDKGFLLTSTEDIINWARTGSLHWMTFGLACCAVEM 61

Query: 70  MQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSC 129
           M  SMPRYD ERFG APRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSC
Sbjct: 62  MHTSMPRYDAERFGIAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSC 121

Query: 130 ANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           ANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG+L LQ+KIRR G +
Sbjct: 122 ANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGLLQLQRKIRRTGTI 175


>gi|149914578|ref|ZP_01903108.1| NADH dehydrogenase subunit B [Roseobacter sp. AzwK-3b]
 gi|149811371|gb|EDM71206.1| NADH dehydrogenase subunit B [Roseobacter sp. AzwK-3b]
          Length = 177

 Score =  285 bits (728), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 130/155 (83%), Positives = 142/155 (91%)

Query: 29  ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88
           ++ E+  KGFLVTS + ++ WARTGSL WMTFGLACCAVEMM ASMPRYDLERFG APRA
Sbjct: 21  LNRELQDKGFLVTSTEDIINWARTGSLHWMTFGLACCAVEMMHASMPRYDLERFGTAPRA 80

Query: 89  SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 148
           SPRQSD+MIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR
Sbjct: 81  SPRQSDLMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 140

Query: 149 IVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           IVPVDIYVPGCPPTAEAL+YGI+ LQ+KIRR G +
Sbjct: 141 IVPVDIYVPGCPPTAEALVYGIMQLQRKIRRTGTI 175


>gi|114764719|ref|ZP_01443904.1| NADH dehydrogenase beta subunit [Pelagibaca bermudensis HTCC2601]
 gi|114542919|gb|EAU45940.1| NADH dehydrogenase beta subunit [Roseovarius sp. HTCC2601]
          Length = 206

 Score =  285 bits (728), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 128/155 (82%), Positives = 143/155 (92%)

Query: 29  ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88
           ++ E++ KGFL+TSVD ++ WARTGSL WMTFGLACCA+EMM  SMPRYDLERFG APRA
Sbjct: 50  LNRELSDKGFLLTSVDDVINWARTGSLHWMTFGLACCAIEMMHTSMPRYDLERFGSAPRA 109

Query: 89  SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 148
           SPRQSD+MIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR
Sbjct: 110 SPRQSDLMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 169

Query: 149 IVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           IVPVD+YVPGCPPTAEAL+YG++ LQKKIRR G +
Sbjct: 170 IVPVDVYVPGCPPTAEALLYGLMALQKKIRRTGTI 204


>gi|85703212|ref|ZP_01034316.1| NADH dehydrogenase beta subunit [Roseovarius sp. 217]
 gi|85672140|gb|EAQ26997.1| NADH dehydrogenase beta subunit [Roseovarius sp. 217]
          Length = 174

 Score =  285 bits (728), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 128/155 (82%), Positives = 143/155 (92%)

Query: 29  ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88
           +++E+  KG+L+TS + ++ WARTGSL WMTFGLACCAVEMM  +MPRYD+ERFGFAPRA
Sbjct: 18  LNAELQDKGYLLTSTEDIINWARTGSLHWMTFGLACCAVEMMHTAMPRYDVERFGFAPRA 77

Query: 89  SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 148
           SPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR
Sbjct: 78  SPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 137

Query: 149 IVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           IVPVDIYVPGCPPTAEAL+YGIL LQ+KIRR G +
Sbjct: 138 IVPVDIYVPGCPPTAEALVYGILQLQRKIRRTGTI 172


>gi|254461551|ref|ZP_05074967.1| NADH dehydrogenase-ubiquinone oxidoreductase, chain b
           [Rhodobacterales bacterium HTCC2083]
 gi|206678140|gb|EDZ42627.1| NADH dehydrogenase-ubiquinone oxidoreductase, chain b
           [Rhodobacteraceae bacterium HTCC2083]
          Length = 181

 Score =  284 bits (727), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 129/161 (80%), Positives = 144/161 (89%)

Query: 23  DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82
           D   + +++E+  KGFL+TS D ++ WARTGSL WMTFGLACCAVEMM  SMPRYDLERF
Sbjct: 19  DHGTAALNAELADKGFLLTSTDDIINWARTGSLHWMTFGLACCAVEMMHTSMPRYDLERF 78

Query: 83  GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142
           G APRASPRQSD+MIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSV
Sbjct: 79  GTAPRASPRQSDLMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSV 138

Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           VRGCDRIVPVDIYVPGCPPTAEAL+YGI+ LQ+K+RR G +
Sbjct: 139 VRGCDRIVPVDIYVPGCPPTAEALLYGIMQLQRKMRRTGTI 179


>gi|3025802|gb|AAC12755.1| NADH-ubiqionone oxidoreductase subunit NuoB [Sinorhizobium
           meliloti]
          Length = 165

 Score =  284 bits (727), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 132/158 (83%), Positives = 143/158 (90%), Gaps = 1/158 (0%)

Query: 28  RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAP 86
            I++E+  KGFLVTS D+L+ WARTGSLMW     LACCAVEMMQ SMPRYD ERFGFAP
Sbjct: 7   EINNELADKGFLVTSTDELINWARTGSLMWNELSVLACCAVEMMQMSMPRYDAERFGFAP 66

Query: 87  RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGC 146
           RASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGC
Sbjct: 67  RASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGC 126

Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           DR+VPVDIYVPGCPPTAEAL+YG+LLLQKKIRR G ++
Sbjct: 127 DRVVPVDIYVPGCPPTAEALLYGVLLLQKKIRRTGTIE 164


>gi|146278043|ref|YP_001168202.1| NADH dehydrogenase subunit B [Rhodobacter sphaeroides ATCC 17025]
 gi|218528015|sp|A4WU33|NUOB2_RHOS5 RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName:
           Full=NADH dehydrogenase I subunit B 2; AltName:
           Full=NDH-1 subunit B 2
 gi|145556284|gb|ABP70897.1| NADH-quinone oxidoreductase, B subunit [Rhodobacter sphaeroides
           ATCC 17025]
          Length = 174

 Score =  284 bits (727), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 130/161 (80%), Positives = 144/161 (89%)

Query: 23  DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82
           D D + ++ E+  KGFL+T+ + L+ WARTGSL WMTFGLACCAVEMM  SMPRYD+ERF
Sbjct: 12  DYDTAGLNRELQDKGFLLTTTEDLINWARTGSLHWMTFGLACCAVEMMHTSMPRYDVERF 71

Query: 83  GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142
           G APRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSV
Sbjct: 72  GVAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSV 131

Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           VRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQ++IRR G +
Sbjct: 132 VRGCDRIVPVDIYVPGCPPTAEALLYGILQLQRRIRRTGTI 172


>gi|163746197|ref|ZP_02153556.1| NADH dehydrogenase subunit B [Oceanibulbus indolifex HEL-45]
 gi|161380942|gb|EDQ05352.1| NADH dehydrogenase subunit B [Oceanibulbus indolifex HEL-45]
          Length = 204

 Score =  284 bits (727), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 129/161 (80%), Positives = 144/161 (89%)

Query: 23  DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82
           D     +++E+  KGFL+TS + ++ WARTGSL WMTFGLACCAVEMM +SMPRYDLERF
Sbjct: 42  DVATHSLNAELQDKGFLLTSTEDIINWARTGSLHWMTFGLACCAVEMMHSSMPRYDLERF 101

Query: 83  GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142
           G APRASPRQSD+MIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSV
Sbjct: 102 GTAPRASPRQSDLMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSV 161

Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           VRGCDRIVPVD+YVPGCPPTAEAL+YGIL LQ+KIRR G +
Sbjct: 162 VRGCDRIVPVDVYVPGCPPTAEALLYGILQLQRKIRRTGTI 202


>gi|329889333|ref|ZP_08267676.1| NADH-quinone oxidoreductase subunit B [Brevundimonas diminuta ATCC
           11568]
 gi|328844634|gb|EGF94198.1| NADH-quinone oxidoreductase subunit B [Brevundimonas diminuta ATCC
           11568]
          Length = 192

 Score =  284 bits (726), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 127/162 (78%), Positives = 146/162 (90%)

Query: 23  DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82
           D  F  +++E+  +GFL TS+D ++TWARTGSLMWM+FGLACCAVEM+  SMPR+DLERF
Sbjct: 30  DKFFESVNTELGERGFLTTSLDDVITWARTGSLMWMSFGLACCAVEMIHLSMPRFDLERF 89

Query: 83  GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142
           G APR SPRQSD+MIVAGTLTNKMA ALR+VYDQMP+PRYVISMGSCANGGGYYHYSYSV
Sbjct: 90  GTAPRGSPRQSDLMIVAGTLTNKMAPALRKVYDQMPDPRYVISMGSCANGGGYYHYSYSV 149

Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           VRGCDR+VPVD+YVPGCPPTAEAL+YGIL LQKKIRR G ++
Sbjct: 150 VRGCDRVVPVDVYVPGCPPTAEALLYGILQLQKKIRRTGTIE 191


>gi|254450431|ref|ZP_05063868.1| NADH dehydrogenase i, b subunit [Octadecabacter antarcticus 238]
 gi|198264837|gb|EDY89107.1| NADH dehydrogenase i, b subunit [Octadecabacter antarcticus 238]
          Length = 184

 Score =  284 bits (726), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 133/171 (77%), Positives = 147/171 (85%), Gaps = 1/171 (0%)

Query: 13  GQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQA 72
           G ++  +++ D     ++ E+T KGFLVTS   L+ WARTGSL WMTFGLACCAVEMM  
Sbjct: 13  GDNTAGVDR-DVATQDLNKELTDKGFLVTSSADLINWARTGSLHWMTFGLACCAVEMMHT 71

Query: 73  SMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANG 132
           SMPRYD ERFG APRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANG
Sbjct: 72  SMPRYDAERFGIAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANG 131

Query: 133 GGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           GGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQ+K+RR G +
Sbjct: 132 GGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQRKMRRTGTI 182


>gi|89067783|ref|ZP_01155237.1| NADH dehydrogenase beta subunit [Oceanicola granulosus HTCC2516]
 gi|89046753|gb|EAR52808.1| NADH dehydrogenase beta subunit [Oceanicola granulosus HTCC2516]
          Length = 204

 Score =  284 bits (726), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 130/155 (83%), Positives = 141/155 (90%)

Query: 29  ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88
           ++ E+  KGFLVTS   ++ WARTGSL WMTFGLACCAVEMM +SMPRYDLERFG APRA
Sbjct: 48  LNRELQDKGFLVTSTADIINWARTGSLHWMTFGLACCAVEMMHSSMPRYDLERFGTAPRA 107

Query: 89  SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 148
           SPRQSD+MIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR
Sbjct: 108 SPRQSDLMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 167

Query: 149 IVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           IVPVDIYVPGCPPTAEAL+YGIL LQ+KIRR G +
Sbjct: 168 IVPVDIYVPGCPPTAEALLYGILQLQRKIRRTGTI 202


>gi|84686428|ref|ZP_01014322.1| NADH dehydrogenase beta subunit [Maritimibacter alkaliphilus
           HTCC2654]
 gi|84665611|gb|EAQ12087.1| NADH dehydrogenase beta subunit [Rhodobacterales bacterium
           HTCC2654]
          Length = 174

 Score =  284 bits (726), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 127/156 (81%), Positives = 144/156 (92%)

Query: 28  RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
           ++S E+  KGFL+T+ D ++ WARTGSL WMTFGLACCAVEMMQ+SMPRYDLER+G APR
Sbjct: 17  QLSDELQDKGFLLTTTDDIINWARTGSLHWMTFGLACCAVEMMQSSMPRYDLERYGTAPR 76

Query: 88  ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCD 147
           ASPRQSD+MIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCD
Sbjct: 77  ASPRQSDLMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCD 136

Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           R+VPVD+YVPGCPP+AEAL+YGIL LQ+KIRR G +
Sbjct: 137 RVVPVDVYVPGCPPSAEALVYGILQLQRKIRRTGTI 172


>gi|126736072|ref|ZP_01751816.1| NADH dehydrogenase beta subunit [Roseobacter sp. CCS2]
 gi|126714629|gb|EBA11496.1| NADH dehydrogenase beta subunit [Roseobacter sp. CCS2]
          Length = 176

 Score =  284 bits (726), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 131/155 (84%), Positives = 141/155 (90%)

Query: 29  ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88
           I+SE+  KGFLVTS   +V WARTGSL WMTFGLACCAVEMM  SMPRYDLERFG APRA
Sbjct: 20  INSELQDKGFLVTSTADIVNWARTGSLHWMTFGLACCAVEMMHTSMPRYDLERFGTAPRA 79

Query: 89  SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 148
           SPRQSD+MIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR
Sbjct: 80  SPRQSDLMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 139

Query: 149 IVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           IVPVD+YVPGCPPTAEAL+YGIL LQ+K+RR G +
Sbjct: 140 IVPVDVYVPGCPPTAEALLYGILQLQRKMRRTGTI 174


>gi|254436528|ref|ZP_05050022.1| NADH-quinone oxidoreductase, B subunit subfamily [Octadecabacter
           antarcticus 307]
 gi|198251974|gb|EDY76288.1| NADH-quinone oxidoreductase, B subunit subfamily [Octadecabacter
           antarcticus 307]
          Length = 177

 Score =  284 bits (726), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 133/171 (77%), Positives = 146/171 (85%), Gaps = 1/171 (0%)

Query: 13  GQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQA 72
           G ++   ++ D     ++ E+T KGFLVTS   L+ WARTGSL WMTFGLACCAVEMM  
Sbjct: 6   GDNTAGFDR-DVATQDLNHELTDKGFLVTSSADLINWARTGSLHWMTFGLACCAVEMMHT 64

Query: 73  SMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANG 132
           SMPRYD ERFG APRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANG
Sbjct: 65  SMPRYDAERFGIAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANG 124

Query: 133 GGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           GGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQ+K+RR G +
Sbjct: 125 GGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQRKMRRTGTI 175


>gi|254486398|ref|ZP_05099603.1| NADH-quinone oxidoreductase chain b [Roseobacter sp. GAI101]
 gi|214043267|gb|EEB83905.1| NADH-quinone oxidoreductase chain b [Roseobacter sp. GAI101]
          Length = 178

 Score =  283 bits (725), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 130/161 (80%), Positives = 142/161 (88%)

Query: 23  DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82
           D     ++ E+  KGFL+TS + ++ WARTGSL WMTFGLACCAVEMM  SMPRYDLERF
Sbjct: 16  DVATQNLNKELQDKGFLLTSTEDIINWARTGSLHWMTFGLACCAVEMMHTSMPRYDLERF 75

Query: 83  GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142
           G APRASPRQSD+MIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSV
Sbjct: 76  GTAPRASPRQSDLMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSV 135

Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           VRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQ+KIRR G +
Sbjct: 136 VRGCDRIVPVDIYVPGCPPTAEALLYGILQLQRKIRRTGTI 176


>gi|260434181|ref|ZP_05788152.1| NADH-quinone oxidoreductase, b subunit [Silicibacter
           lacuscaerulensis ITI-1157]
 gi|260418009|gb|EEX11268.1| NADH-quinone oxidoreductase, b subunit [Silicibacter
           lacuscaerulensis ITI-1157]
          Length = 174

 Score =  283 bits (725), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 130/173 (75%), Positives = 150/173 (86%), Gaps = 1/173 (0%)

Query: 11  ISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMM 70
           ++G ++  ++K +     +++E+  KGFL+TS + ++ WARTGSL WMTFGLACCAVEMM
Sbjct: 1   MTGANTAGVDK-EVATQALNAELQDKGFLLTSTEDIINWARTGSLHWMTFGLACCAVEMM 59

Query: 71  QASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCA 130
             SMPRYD ERFG APRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCA
Sbjct: 60  HTSMPRYDAERFGIAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCA 119

Query: 131 NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG+L LQ+KIRR G +
Sbjct: 120 NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGLLQLQRKIRRTGTI 172


>gi|89053661|ref|YP_509112.1| NADH dehydrogenase subunit B [Jannaschia sp. CCS1]
 gi|122499244|sp|Q28T75|NUOB_JANSC RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|88863210|gb|ABD54087.1| NADH dehydrogenase subunit B [Jannaschia sp. CCS1]
          Length = 177

 Score =  283 bits (724), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 130/155 (83%), Positives = 140/155 (90%)

Query: 29  ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88
           ++ E+  KGFLVTS + ++ WARTGSL WMTFGLACCAVEMM  SMPRYD ERFG APRA
Sbjct: 21  LNRELQDKGFLVTSSEDIINWARTGSLHWMTFGLACCAVEMMHTSMPRYDAERFGIAPRA 80

Query: 89  SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 148
           SPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR
Sbjct: 81  SPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 140

Query: 149 IVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           IVPVDIYVPGCPPTAEAL+YGIL LQ+KIRR G +
Sbjct: 141 IVPVDIYVPGCPPTAEALLYGILQLQRKIRRTGTI 175


>gi|114771817|ref|ZP_01449210.1| NADH dehydrogenase subunit B [alpha proteobacterium HTCC2255]
 gi|114547633|gb|EAU50524.1| NADH dehydrogenase subunit B [alpha proteobacterium HTCC2255]
          Length = 177

 Score =  283 bits (723), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 128/157 (81%), Positives = 143/157 (91%)

Query: 27  SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP 86
           S ++ E+  KGFL+TS + ++ WARTGSL WMTFGLACCAVEMM ++MPRYDLERFG AP
Sbjct: 19  SALNRELQDKGFLLTSAEDIINWARTGSLHWMTFGLACCAVEMMHSAMPRYDLERFGTAP 78

Query: 87  RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGC 146
           RASPRQSD+MIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGC
Sbjct: 79  RASPRQSDLMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGC 138

Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           DRIVPVDIYVPGCPPTAEAL+YGIL LQ+K+RR G +
Sbjct: 139 DRIVPVDIYVPGCPPTAEALLYGILQLQRKMRRTGTI 175


>gi|254511808|ref|ZP_05123875.1| NADH dehydrogenase i, b subunit [Rhodobacteraceae bacterium KLH11]
 gi|221535519|gb|EEE38507.1| NADH dehydrogenase i, b subunit [Rhodobacteraceae bacterium KLH11]
          Length = 174

 Score =  282 bits (722), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 129/173 (74%), Positives = 150/173 (86%), Gaps = 1/173 (0%)

Query: 11  ISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMM 70
           ++G ++  ++K +     +++E+  KGFL+TS + ++ WARTGSL WMTFGLACCAVEMM
Sbjct: 1   MTGANTAGVDK-EVATQALNAELQDKGFLLTSTEDIINWARTGSLHWMTFGLACCAVEMM 59

Query: 71  QASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCA 130
             SMPRYD ERFG APRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCA
Sbjct: 60  HTSMPRYDAERFGIAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCA 119

Query: 131 NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG++ LQ+KIRR G +
Sbjct: 120 NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGLMQLQRKIRRTGTI 172


>gi|259418740|ref|ZP_05742657.1| NADH-quinone oxidoreductase subunit b [Silicibacter sp. TrichCH4B]
 gi|259344962|gb|EEW56816.1| NADH-quinone oxidoreductase subunit b [Silicibacter sp. TrichCH4B]
          Length = 177

 Score =  282 bits (721), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 129/174 (74%), Positives = 151/174 (86%), Gaps = 1/174 (0%)

Query: 10  IISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEM 69
           +++G ++  ++K +     +++E+  KGFL+TS + ++ WARTGSL WMTFGLACCAVEM
Sbjct: 3   VMAGANTAGVDK-EVVTQALNAELQDKGFLLTSAEDIINWARTGSLHWMTFGLACCAVEM 61

Query: 70  MQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSC 129
           M  SMPRYD ERFG APRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSC
Sbjct: 62  MHTSMPRYDAERFGIAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSC 121

Query: 130 ANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           ANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG++ LQ+KIRR G +
Sbjct: 122 ANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGLMQLQRKIRRTGTL 175


>gi|84516742|ref|ZP_01004100.1| NADH dehydrogenase beta subunit [Loktanella vestfoldensis SKA53]
 gi|84509210|gb|EAQ05669.1| NADH dehydrogenase beta subunit [Loktanella vestfoldensis SKA53]
          Length = 173

 Score =  282 bits (721), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 129/155 (83%), Positives = 141/155 (90%)

Query: 29  ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88
           +++E+  KGFLVTS   ++ WARTGSL WMTFGLACCAVEMM  SMPRYDLERFG APRA
Sbjct: 17  LNAELQDKGFLVTSTADVINWARTGSLHWMTFGLACCAVEMMHTSMPRYDLERFGTAPRA 76

Query: 89  SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 148
           SPRQSD+MIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR
Sbjct: 77  SPRQSDLMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 136

Query: 149 IVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           IVPVDIYVPGCPPTAEAL+YGIL LQ+K+RR G +
Sbjct: 137 IVPVDIYVPGCPPTAEALLYGILQLQRKMRRTGTI 171


>gi|254456317|ref|ZP_05069746.1| NADH dehydrogenase i chain b [Candidatus Pelagibacter sp. HTCC7211]
 gi|207083319|gb|EDZ60745.1| NADH dehydrogenase i chain b [Candidatus Pelagibacter sp. HTCC7211]
          Length = 171

 Score =  282 bits (721), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 126/164 (76%), Positives = 146/164 (89%)

Query: 19  LEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78
           +++V  +F +++ + +  GF+ TS+D L+ W+R+GSL WMTFGLACCAVEMMQ +MPRYD
Sbjct: 5   IDQVPEEFKQLAEDFSKNGFITTSLDNLINWSRSGSLHWMTFGLACCAVEMMQTAMPRYD 64

Query: 79  LERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY 138
           LERFG APR SPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHY
Sbjct: 65  LERFGAAPRGSPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHY 124

Query: 139 SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
           SYSVVRGCDRIVPVD+YVPGCPP+AEAL+YGIL LQKKIR  G+
Sbjct: 125 SYSVVRGCDRIVPVDVYVPGCPPSAEALLYGILQLQKKIRNKGS 168


>gi|83942674|ref|ZP_00955135.1| NADH dehydrogenase beta subunit [Sulfitobacter sp. EE-36]
 gi|83953913|ref|ZP_00962634.1| NADH dehydrogenase beta subunit [Sulfitobacter sp. NAS-14.1]
 gi|83841858|gb|EAP81027.1| NADH dehydrogenase beta subunit [Sulfitobacter sp. NAS-14.1]
 gi|83846767|gb|EAP84643.1| NADH dehydrogenase beta subunit [Sulfitobacter sp. EE-36]
          Length = 178

 Score =  281 bits (720), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 127/161 (78%), Positives = 142/161 (88%)

Query: 23  DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82
           D     ++ E+  KGFL+TS + ++ WARTGSL WMTFGLACCAVEMM  SMPRYDLERF
Sbjct: 16  DVATQNLNKELQDKGFLLTSTEDIINWARTGSLHWMTFGLACCAVEMMHTSMPRYDLERF 75

Query: 83  GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142
           G APRASPRQSD+MIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSV
Sbjct: 76  GTAPRASPRQSDLMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSV 135

Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           VRGCDR+VPVD+YVPGCPPTAEAL+YGI+ LQ+KIRR G +
Sbjct: 136 VRGCDRVVPVDVYVPGCPPTAEALLYGIMQLQRKIRRTGTI 176


>gi|159043857|ref|YP_001532651.1| NADH dehydrogenase subunit B [Dinoroseobacter shibae DFL 12]
 gi|218527990|sp|A8LIT6|NUOB_DINSH RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|157911617|gb|ABV93050.1| NADH-quinone oxidoreductase [Dinoroseobacter shibae DFL 12]
          Length = 177

 Score =  281 bits (720), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 127/155 (81%), Positives = 141/155 (90%)

Query: 29  ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88
           +++E+  KGFL+TS + ++ WARTGSL WMTFGLACCAVEMM  SMPRYD ERFG APRA
Sbjct: 21  LNNELQDKGFLLTSTEDIINWARTGSLHWMTFGLACCAVEMMHTSMPRYDAERFGIAPRA 80

Query: 89  SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 148
           SPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR
Sbjct: 81  SPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 140

Query: 149 IVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           +VPVDIYVPGCPPTAEAL+YG+L LQ+KIRR G +
Sbjct: 141 VVPVDIYVPGCPPTAEALLYGLLQLQRKIRRTGTI 175


>gi|114799608|ref|YP_760447.1| NADH dehydrogenase subunit B [Hyphomonas neptunium ATCC 15444]
 gi|122942427|sp|Q0C1E6|NUOB_HYPNA RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|114739782|gb|ABI77907.1| NADH-quinone oxidoreductase, B subunit [Hyphomonas neptunium ATCC
           15444]
          Length = 190

 Score =  281 bits (720), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 128/162 (79%), Positives = 142/162 (87%)

Query: 23  DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82
           D  +S +S ++  KG+   + D L++WARTGSLMWMTFGLACCAVEMM A  PRYDLERF
Sbjct: 28  DPFYSGLSDQLADKGYFTAAADDLISWARTGSLMWMTFGLACCAVEMMHAGNPRYDLERF 87

Query: 83  GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142
           G APR SPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSV
Sbjct: 88  GMAPRGSPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSV 147

Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           VRGCDRIVPVDIY+PGCPPTAEAL+YG L LQKKIRR G+++
Sbjct: 148 VRGCDRIVPVDIYIPGCPPTAEALVYGFLQLQKKIRREGSIE 189


>gi|119384981|ref|YP_916037.1| NADH dehydrogenase subunit B [Paracoccus denitrificans PD1222]
 gi|218527939|sp|A1B497|NUOB_PARDP RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NADH
           dehydrogenase I, subunit 6; AltName: Full=NADH-quinone
           oxidoreductase subunit 6; Short=NQO6; AltName:
           Full=NDH-1 subunit B; AltName: Full=NDH-1, subunit 6
 gi|119374748|gb|ABL70341.1| NADH dehydrogenase subunit B [Paracoccus denitrificans PD1222]
          Length = 175

 Score =  281 bits (720), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 129/174 (74%), Positives = 151/174 (86%), Gaps = 1/174 (0%)

Query: 10  IISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEM 69
           +++G ++   ++ D   + ++ E+  KGFL+T+ + ++ WAR GSL WMTFGLACCAVEM
Sbjct: 1   MMTGLNTAGADR-DLATAELNRELQDKGFLLTTTEDIINWARNGSLHWMTFGLACCAVEM 59

Query: 70  MQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSC 129
           MQ SMPRYDLERFG APRASPRQSD+MIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSC
Sbjct: 60  MQTSMPRYDLERFGTAPRASPRQSDLMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSC 119

Query: 130 ANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           ANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQ++IRR G +
Sbjct: 120 ANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQRRIRRTGTL 173


>gi|126729549|ref|ZP_01745362.1| NADH dehydrogenase subunit B [Sagittula stellata E-37]
 gi|126709668|gb|EBA08721.1| NADH dehydrogenase subunit B [Sagittula stellata E-37]
          Length = 174

 Score =  281 bits (719), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 127/155 (81%), Positives = 141/155 (90%)

Query: 29  ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88
           ++ E+  KGFL+TS + ++ WARTGSL WMTFGLACCAVEMM  SMPRYDLERFG APRA
Sbjct: 18  LNRELQDKGFLLTSTEDIINWARTGSLHWMTFGLACCAVEMMHTSMPRYDLERFGTAPRA 77

Query: 89  SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 148
           SPRQSD+MIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR
Sbjct: 78  SPRQSDLMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 137

Query: 149 IVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           +VPVD+YVPGCPPTAEAL+YGI+ LQKKIRR G +
Sbjct: 138 VVPVDVYVPGCPPTAEALLYGIMALQKKIRRTGTL 172


>gi|260574759|ref|ZP_05842762.1| NADH-quinone oxidoreductase, B subunit [Rhodobacter sp. SW2]
 gi|259023176|gb|EEW26469.1| NADH-quinone oxidoreductase, B subunit [Rhodobacter sp. SW2]
          Length = 177

 Score =  281 bits (719), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 127/155 (81%), Positives = 143/155 (92%)

Query: 29  ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88
           ++ E++ KGFL+TS + ++ WARTGSL WMTFGLACCAVEM+Q SMPRYDLERFG APRA
Sbjct: 21  LNRELSDKGFLLTSTEDIINWARTGSLHWMTFGLACCAVEMIQLSMPRYDLERFGTAPRA 80

Query: 89  SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 148
           SPRQSD+MIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR
Sbjct: 81  SPRQSDLMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 140

Query: 149 IVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           IVPVD+YVPGCPPTAEAL+YGIL LQ+K+RR G +
Sbjct: 141 IVPVDVYVPGCPPTAEALLYGILQLQRKMRRTGTI 175


>gi|409251|gb|AAA03036.1| NADH dehydrogenase [Paracoccus denitrificans]
          Length = 174

 Score =  281 bits (719), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 128/161 (79%), Positives = 143/161 (88%)

Query: 23  DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82
           D   + ++ E+  KGFL+T+ + ++ WAR GSL WMTFGLACCAVEMMQ SMPRYDLERF
Sbjct: 12  DLATAELNRELQDKGFLLTTTEDIINWARNGSLHWMTFGLACCAVEMMQTSMPRYDLERF 71

Query: 83  GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142
           G APRASPRQSD+MIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSV
Sbjct: 72  GTAPRASPRQSDLMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSV 131

Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           VRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQ++IRR G +
Sbjct: 132 VRGCDRIVPVDIYVPGCPPTAEALLYGILQLQRRIRRTGTL 172


>gi|99080583|ref|YP_612737.1| NADH dehydrogenase subunit B [Ruegeria sp. TM1040]
 gi|123077741|sp|Q1GIP1|NUOB_SILST RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|99036863|gb|ABF63475.1| NADH-quinone oxidoreductase B subunit [Ruegeria sp. TM1040]
          Length = 174

 Score =  281 bits (719), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 127/155 (81%), Positives = 141/155 (90%)

Query: 29  ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88
           +++E+  KGFL+TS + ++ WARTGSL WMTFGLACCAVEMM  SMPRYD ERFG APRA
Sbjct: 18  LNAELQDKGFLLTSAEDIINWARTGSLHWMTFGLACCAVEMMHTSMPRYDAERFGIAPRA 77

Query: 89  SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 148
           SPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR
Sbjct: 78  SPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 137

Query: 149 IVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           IVPVDIYVPGCPPTAEAL+YG++ LQ+KIRR G +
Sbjct: 138 IVPVDIYVPGCPPTAEALLYGLMQLQRKIRRTGTL 172


>gi|86137600|ref|ZP_01056177.1| NADH dehydrogenase beta subunit [Roseobacter sp. MED193]
 gi|85825935|gb|EAQ46133.1| NADH dehydrogenase beta subunit [Roseobacter sp. MED193]
          Length = 174

 Score =  281 bits (719), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 129/173 (74%), Positives = 150/173 (86%), Gaps = 1/173 (0%)

Query: 11  ISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMM 70
           ++G ++  ++K +     +++E+  KGFL+TS + ++ WARTGSL WMTFGLACCAVEMM
Sbjct: 1   MTGANTAGVDK-EVVTQALNAELQDKGFLLTSTEDIINWARTGSLHWMTFGLACCAVEMM 59

Query: 71  QASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCA 130
             SMPRYD ERFG APRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCA
Sbjct: 60  HTSMPRYDAERFGIAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCA 119

Query: 131 NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG++ LQ+KIRR G +
Sbjct: 120 NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGLMQLQRKIRRTGTL 172


>gi|71083583|ref|YP_266302.1| NADH dehydrogenase subunit B [Candidatus Pelagibacter ubique
           HTCC1062]
 gi|91761996|ref|ZP_01263961.1| NADH dehydrogenase beta subunit [Candidatus Pelagibacter ubique
           HTCC1002]
 gi|123646646|sp|Q4FM90|NUOB_PELUB RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|71062696|gb|AAZ21699.1| NADH Dehydrogenase I Chain B [Candidatus Pelagibacter ubique
           HTCC1062]
 gi|91717798|gb|EAS84448.1| NADH dehydrogenase beta subunit [Candidatus Pelagibacter ubique
           HTCC1002]
          Length = 173

 Score =  281 bits (719), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 125/165 (75%), Positives = 145/165 (87%)

Query: 20  EKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDL 79
           +++  +F +++ + +  GF+ TS+D L+ W+R GSL WMTFGLACCAVEMMQ +MPRYDL
Sbjct: 8   KEIPEEFKKLAEDFSKNGFITTSLDNLINWSRAGSLHWMTFGLACCAVEMMQTAMPRYDL 67

Query: 80  ERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS 139
           ERFG APR SPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYS
Sbjct: 68  ERFGAAPRGSPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYS 127

Query: 140 YSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           YSVVRGCD+IVPVDIYVPGCPP+AEAL+YGIL LQKKIR  G+ +
Sbjct: 128 YSVVRGCDKIVPVDIYVPGCPPSAEALLYGILQLQKKIRNKGSFE 172


>gi|126740377|ref|ZP_01756065.1| NADH dehydrogenase subunit B [Roseobacter sp. SK209-2-6]
 gi|126718513|gb|EBA15227.1| NADH dehydrogenase subunit B [Roseobacter sp. SK209-2-6]
          Length = 174

 Score =  281 bits (718), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 128/173 (73%), Positives = 150/173 (86%), Gaps = 1/173 (0%)

Query: 11  ISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMM 70
           ++G ++  ++K +     I++E+  KGFL+TS + ++ WARTGSL WMTFGLACCAVEMM
Sbjct: 1   MTGANTAGVDK-EVVTQAINAELQDKGFLLTSAEDIINWARTGSLHWMTFGLACCAVEMM 59

Query: 71  QASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCA 130
             SMPRYD ERFG APRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCA
Sbjct: 60  HTSMPRYDAERFGIAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCA 119

Query: 131 NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           NGGGYYHYSYSVVRGCDR+VPVD+YVPGCPPTAEAL+YG++ LQ+KIRR G +
Sbjct: 120 NGGGYYHYSYSVVRGCDRVVPVDVYVPGCPPTAEALLYGLMQLQRKIRRTGTL 172


>gi|310816715|ref|YP_003964679.1| NADH-quinone oxidoreductase, B subunit [Ketogulonicigenium vulgare
           Y25]
 gi|308755450|gb|ADO43379.1| NADH-quinone oxidoreductase, B subunit [Ketogulonicigenium vulgare
           Y25]
          Length = 188

 Score =  281 bits (718), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 134/184 (72%), Positives = 149/184 (80%), Gaps = 6/184 (3%)

Query: 6   VNQKIISGQSSCSLEK----VDADFSRI--SSEITHKGFLVTSVDQLVTWARTGSLMWMT 59
           +NQ     Q S    +     DAD + +     +  KGFLVTS   ++ WARTGSL WMT
Sbjct: 3   LNQLSTGAQGSVQTGRNSAGADADHAALVLGRAVQDKGFLVTSTADIINWARTGSLHWMT 62

Query: 60  FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119
           FGLACCAVEMMQ SMPRYDLERFG APRASPRQ+D+MIVAGTLTNKMA ALR+VYDQMPE
Sbjct: 63  FGLACCAVEMMQLSMPRYDLERFGTAPRASPRQADLMIVAGTLTNKMAPALRKVYDQMPE 122

Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD+YVPGCPPTAEAL+YGI+ LQ+KIRR
Sbjct: 123 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALLYGIMQLQRKIRR 182

Query: 180 VGNV 183
            G +
Sbjct: 183 TGTI 186


>gi|254476799|ref|ZP_05090185.1| NADH-quinone oxidoreductase chain b [Ruegeria sp. R11]
 gi|214031042|gb|EEB71877.1| NADH-quinone oxidoreductase chain b [Ruegeria sp. R11]
          Length = 177

 Score =  281 bits (718), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 127/174 (72%), Positives = 151/174 (86%), Gaps = 1/174 (0%)

Query: 10  IISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEM 69
           +++G ++  ++K +     +++E+  KGFL+TS + ++ WARTGSL WMTFGLACCAVEM
Sbjct: 3   VMTGANTAGVDK-EMVTQALNAELQDKGFLLTSAEDIINWARTGSLHWMTFGLACCAVEM 61

Query: 70  MQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSC 129
           M  SMPRYD ERFG APRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSC
Sbjct: 62  MHTSMPRYDAERFGIAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSC 121

Query: 130 ANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           ANGGGYYHYSYSVVRGCDR+VPVD+YVPGCPPTAEAL+YG++ LQ+KIRR G +
Sbjct: 122 ANGGGYYHYSYSVVRGCDRVVPVDVYVPGCPPTAEALLYGLMQLQRKIRRTGTL 175


>gi|84502605|ref|ZP_01000724.1| NADH dehydrogenase beta subunit [Oceanicola batsensis HTCC2597]
 gi|84389000|gb|EAQ01798.1| NADH dehydrogenase beta subunit [Oceanicola batsensis HTCC2597]
          Length = 207

 Score =  281 bits (718), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 127/155 (81%), Positives = 139/155 (89%)

Query: 29  ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88
           ++ E+  KGFL+TS + L+ WARTGSL WMTFGLACCAVEMM  SMPRYD ERFG APRA
Sbjct: 51  LNKELQDKGFLLTSTEDLINWARTGSLHWMTFGLACCAVEMMHTSMPRYDAERFGIAPRA 110

Query: 89  SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 148
           SPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYV+SMGSCANGGGYYHYSYSVVRGCDR
Sbjct: 111 SPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGYYHYSYSVVRGCDR 170

Query: 149 IVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           IVPVDIYVPGCPPTAEAL+YGI+ L +KIRR G +
Sbjct: 171 IVPVDIYVPGCPPTAEALLYGIMQLARKIRRTGTI 205


>gi|163732066|ref|ZP_02139512.1| NADH dehydrogenase subunit B [Roseobacter litoralis Och 149]
 gi|161394364|gb|EDQ18687.1| NADH dehydrogenase subunit B [Roseobacter litoralis Och 149]
          Length = 177

 Score =  280 bits (717), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 126/155 (81%), Positives = 141/155 (90%)

Query: 29  ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88
           ++ E+  KGFL+TS + ++ WARTGSL WMTFGLACCAVEMM  +MPRYD+ERFG APRA
Sbjct: 21  LNRELQDKGFLLTSTEDIINWARTGSLHWMTFGLACCAVEMMHTAMPRYDMERFGTAPRA 80

Query: 89  SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 148
           SPRQSD+MIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR
Sbjct: 81  SPRQSDLMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 140

Query: 149 IVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           IVPVDIYVPGCPPTAEAL+YGI+ LQ+KIRR G +
Sbjct: 141 IVPVDIYVPGCPPTAEALLYGIMQLQRKIRRTGTI 175


>gi|149184638|ref|ZP_01862956.1| NADH dehydrogenase subunit B [Erythrobacter sp. SD-21]
 gi|148831958|gb|EDL50391.1| NADH dehydrogenase subunit B [Erythrobacter sp. SD-21]
          Length = 168

 Score =  280 bits (717), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 130/167 (77%), Positives = 147/167 (88%), Gaps = 1/167 (0%)

Query: 19  LEKVDAD-FSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRY 77
           + K DAD F+ + +E+  KGFLVTS + L  WARTGSL WMTFGLACCAVEM+  +MPRY
Sbjct: 1   MRKPDADYFNALQTEVNDKGFLVTSTEDLFQWARTGSLWWMTFGLACCAVEMIHVNMPRY 60

Query: 78  DLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137
           D+ERFG APRASPRQSDVMIVAGTL NKMA ALR+VYDQM EP+YVISMGSCANGGGYYH
Sbjct: 61  DMERFGVAPRASPRQSDVMIVAGTLCNKMAPALRKVYDQMSEPKYVISMGSCANGGGYYH 120

Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           YSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG++ LQ+KIRRVG ++
Sbjct: 121 YSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGVMQLQRKIRRVGTIE 167


>gi|255262340|ref|ZP_05341682.1| NADH-quinone oxidoreductase subunit b [Thalassiobium sp. R2A62]
 gi|255104675|gb|EET47349.1| NADH-quinone oxidoreductase subunit b [Thalassiobium sp. R2A62]
          Length = 177

 Score =  280 bits (716), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 127/155 (81%), Positives = 141/155 (90%)

Query: 29  ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88
           ++ E+  KGFL+TS + ++ WARTGSL WMTFGLACCAVEMM  SMPRYDLERFG APRA
Sbjct: 21  LNRELQDKGFLLTSTEDIINWARTGSLHWMTFGLACCAVEMMHTSMPRYDLERFGTAPRA 80

Query: 89  SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 148
           SPRQSD+MIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR
Sbjct: 81  SPRQSDLMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 140

Query: 149 IVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           IVPVD+YVPGCPPTAEAL+YGIL LQ+K+RR G +
Sbjct: 141 IVPVDVYVPGCPPTAEALLYGILQLQRKMRRTGTL 175


>gi|163738798|ref|ZP_02146212.1| NADH dehydrogenase subunit B [Phaeobacter gallaeciensis BS107]
 gi|163741491|ref|ZP_02148882.1| NADH dehydrogenase subunit B [Phaeobacter gallaeciensis 2.10]
 gi|161385225|gb|EDQ09603.1| NADH dehydrogenase subunit B [Phaeobacter gallaeciensis 2.10]
 gi|161388126|gb|EDQ12481.1| NADH dehydrogenase subunit B [Phaeobacter gallaeciensis BS107]
          Length = 174

 Score =  280 bits (716), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 127/173 (73%), Positives = 150/173 (86%), Gaps = 1/173 (0%)

Query: 11  ISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMM 70
           ++G ++  ++K +     +++E+  KGFL+TS + ++ WARTGSL WMTFGLACCAVEMM
Sbjct: 1   MTGANTAGVDK-EVVTQALNAELQDKGFLLTSAEDIINWARTGSLHWMTFGLACCAVEMM 59

Query: 71  QASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCA 130
             SMPRYD ERFG APRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCA
Sbjct: 60  HTSMPRYDAERFGIAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCA 119

Query: 131 NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           NGGGYYHYSYSVVRGCDR+VPVD+YVPGCPPTAEAL+YG++ LQ+KIRR G +
Sbjct: 120 NGGGYYHYSYSVVRGCDRVVPVDVYVPGCPPTAEALLYGLMQLQRKIRRTGTL 172


>gi|110680471|ref|YP_683478.1| NADH dehydrogenase subunit B [Roseobacter denitrificans OCh 114]
 gi|123172224|sp|Q163Q1|NUOB_ROSDO RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|109456587|gb|ABG32792.1| NADH-quinone oxidoreductase chain B [Roseobacter denitrificans OCh
           114]
          Length = 177

 Score =  280 bits (716), Expect = 7e-74,   Method: Compositional matrix adjust.
 Identities = 125/155 (80%), Positives = 141/155 (90%)

Query: 29  ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88
           ++ E+  KGFL+TS + ++ WARTGSL WMTFGLACCAVEMM  +MPRYD+ERFG APRA
Sbjct: 21  LNRELQDKGFLLTSTEDIINWARTGSLHWMTFGLACCAVEMMHTAMPRYDMERFGTAPRA 80

Query: 89  SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 148
           SPRQSD+MIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR
Sbjct: 81  SPRQSDLMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 140

Query: 149 IVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           IVPVD+YVPGCPPTAEAL+YGI+ LQ+KIRR G +
Sbjct: 141 IVPVDVYVPGCPPTAEALLYGIMQLQRKIRRTGTI 175


>gi|254465701|ref|ZP_05079112.1| NADH-quinone oxidoreductase chain b [Rhodobacterales bacterium Y4I]
 gi|206686609|gb|EDZ47091.1| NADH-quinone oxidoreductase chain b [Rhodobacterales bacterium Y4I]
          Length = 174

 Score =  280 bits (715), Expect = 7e-74,   Method: Compositional matrix adjust.
 Identities = 125/155 (80%), Positives = 141/155 (90%)

Query: 29  ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88
           +++E+  KGFL+TS + ++ WARTGSL WMTFGLACCAVEMM  SMPRYD ERFG APRA
Sbjct: 18  LNAELQDKGFLLTSAEDIINWARTGSLHWMTFGLACCAVEMMHTSMPRYDAERFGIAPRA 77

Query: 89  SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 148
           SPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR
Sbjct: 78  SPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 137

Query: 149 IVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           +VPVD+YVPGCPPTAEAL+YG++ LQ+KIRR G +
Sbjct: 138 VVPVDVYVPGCPPTAEALLYGLMQLQRKIRRTGTL 172


>gi|148555890|ref|YP_001263472.1| NADH dehydrogenase subunit B [Sphingomonas wittichii RW1]
 gi|218528008|sp|A5VAL8|NUOB_SPHWW RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|148501080|gb|ABQ69334.1| NADH-quinone oxidoreductase, B subunit [Sphingomonas wittichii RW1]
          Length = 187

 Score =  278 bits (711), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 130/163 (79%), Positives = 144/163 (88%), Gaps = 1/163 (0%)

Query: 23  DAD-FSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLER 81
           D D F  + +E+  KGFLVTS ++L  WARTGSL WMTFGLACCAVEM+  +MPRYDLER
Sbjct: 24  DPDYFKALQAEVNDKGFLVTSAEELFQWARTGSLWWMTFGLACCAVEMIHVNMPRYDLER 83

Query: 82  FGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYS 141
           FG APRASPRQSDVMIVAGTL NKMA ALRRVYDQM EP+YVISMGSCANGGGYYHYSYS
Sbjct: 84  FGAAPRASPRQSDVMIVAGTLCNKMAPALRRVYDQMSEPKYVISMGSCANGGGYYHYSYS 143

Query: 142 VVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           VVRGCDRIVPVDIYVPGCPPTAEAL+YGI+ LQ+KIRR+G ++
Sbjct: 144 VVRGCDRIVPVDIYVPGCPPTAEALLYGIMQLQRKIRRIGTLE 186


>gi|254420093|ref|ZP_05033817.1| NADH-quinone oxidoreductase, B subunit subfamily [Brevundimonas sp.
           BAL3]
 gi|196186270|gb|EDX81246.1| NADH-quinone oxidoreductase, B subunit subfamily [Brevundimonas sp.
           BAL3]
          Length = 173

 Score =  277 bits (709), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 123/161 (76%), Positives = 143/161 (88%)

Query: 23  DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82
           D  F  ++ E+  +GFL  S+D ++TWARTGSLMWMTFGLACCAVEM+Q SMPR+D+ERF
Sbjct: 11  DKFFESVNMELGERGFLTASLDDVITWARTGSLMWMTFGLACCAVEMIQMSMPRFDVERF 70

Query: 83  GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142
           G APR SPR SD+MIVAGTLTNKMA A+R+VYDQMP+PRYV+SMGSCANGGGYYHYSYSV
Sbjct: 71  GMAPRGSPRHSDLMIVAGTLTNKMAPAIRKVYDQMPDPRYVVSMGSCANGGGYYHYSYSV 130

Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           VRGCDR+VPVD+YVPGCPPTAEAL+YG+L LQKKIRR G +
Sbjct: 131 VRGCDRVVPVDVYVPGCPPTAEALLYGLLQLQKKIRRTGTI 171


>gi|307293269|ref|ZP_07573115.1| NADH-quinone oxidoreductase, B subunit [Sphingobium
           chlorophenolicum L-1]
 gi|306881335|gb|EFN12551.1| NADH-quinone oxidoreductase, B subunit [Sphingobium
           chlorophenolicum L-1]
          Length = 184

 Score =  277 bits (708), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 128/163 (78%), Positives = 146/163 (89%), Gaps = 1/163 (0%)

Query: 23  DADF-SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLER 81
           D DF + ++SE++ KGFLVTS ++L  WARTGSL WMTFGLACCAVEM+  +MPRYD+ER
Sbjct: 21  DQDFFNALNSEVSDKGFLVTSTEELFQWARTGSLWWMTFGLACCAVEMIHVNMPRYDMER 80

Query: 82  FGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYS 141
           FG APRASPRQSDVMIVAGTL NKMA ALR+VYDQM  P+YVISMGSCANGGGYYHYSYS
Sbjct: 81  FGAAPRASPRQSDVMIVAGTLCNKMAPALRKVYDQMSNPKYVISMGSCANGGGYYHYSYS 140

Query: 142 VVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           VVRGCDRIVPVDIYVPGCPPTAEAL+YG++ LQ+KIRR+G V+
Sbjct: 141 VVRGCDRIVPVDIYVPGCPPTAEALLYGVMQLQRKIRRIGTVE 183


>gi|126727142|ref|ZP_01742979.1| NADH dehydrogenase subunit B [Rhodobacterales bacterium HTCC2150]
 gi|126703570|gb|EBA02666.1| NADH dehydrogenase subunit B [Rhodobacterales bacterium HTCC2150]
          Length = 176

 Score =  277 bits (708), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 123/155 (79%), Positives = 141/155 (90%)

Query: 29  ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88
           ++ E+  KGFL+TS + ++ WARTGSL WMTFGLACCAVEMM  +MPRYD+ERFG APRA
Sbjct: 20  LNRELQDKGFLLTSTEDIINWARTGSLHWMTFGLACCAVEMMHTAMPRYDMERFGTAPRA 79

Query: 89  SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 148
           SPRQSD+MIVAGTLTNKMA ALR+VYDQMPEPRYV+SMGSCANGGGYYHYSYSVVRGCDR
Sbjct: 80  SPRQSDLMIVAGTLTNKMAPALRKVYDQMPEPRYVLSMGSCANGGGYYHYSYSVVRGCDR 139

Query: 149 IVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           +VPVD+YVPGCPPTAEAL+YG+L LQ+KIRR G +
Sbjct: 140 VVPVDMYVPGCPPTAEALLYGLLQLQRKIRRTGTI 174


>gi|294011308|ref|YP_003544768.1| NADH dehydrogenase I chain B [Sphingobium japonicum UT26S]
 gi|292674638|dbj|BAI96156.1| NADH dehydrogenase I chain B [Sphingobium japonicum UT26S]
          Length = 184

 Score =  276 bits (707), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 126/159 (79%), Positives = 143/159 (89%)

Query: 26  FSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA 85
           F  ++SE++ KGFLVTS ++L  WARTGSL WMTFGLACCAVEM+  +MPRYD+ERFG A
Sbjct: 25  FDALNSEVSDKGFLVTSTEELFQWARTGSLWWMTFGLACCAVEMIHVNMPRYDMERFGAA 84

Query: 86  PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRG 145
           PRASPRQSDVMIVAGTL NKMA ALR+VYDQM  P+YVISMGSCANGGGYYHYSYSVVRG
Sbjct: 85  PRASPRQSDVMIVAGTLCNKMAPALRKVYDQMSNPKYVISMGSCANGGGYYHYSYSVVRG 144

Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           CDRIVPVDIYVPGCPPTAEAL+YG++ LQ+KIRR+G V+
Sbjct: 145 CDRIVPVDIYVPGCPPTAEALLYGVMQLQRKIRRIGTVE 183


>gi|296283830|ref|ZP_06861828.1| NADH dehydrogenase subunit B [Citromicrobium bathyomarinum JL354]
          Length = 192

 Score =  276 bits (706), Expect = 9e-73,   Method: Compositional matrix adjust.
 Identities = 128/179 (71%), Positives = 149/179 (83%), Gaps = 1/179 (0%)

Query: 7   NQKIISGQSSCSLEKVDAD-FSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACC 65
           N ++        + + D+D F+ + +E+  KGFLVTS ++L  WARTGSL WMTFGLACC
Sbjct: 13  NPQMQPAAQPGEVRQPDSDYFNALQTEVNDKGFLVTSTEELFQWARTGSLWWMTFGLACC 72

Query: 66  AVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVIS 125
           AVEM+  +MPRYD+ERFG APRASPRQSDVMIVAGTL NKMA ALR+VYDQM  P+YVIS
Sbjct: 73  AVEMIHVNMPRYDMERFGVAPRASPRQSDVMIVAGTLCNKMAPALRKVYDQMSNPKYVIS 132

Query: 126 MGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           MGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG++ LQ+KIRR G V+
Sbjct: 133 MGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGVMQLQRKIRRSGTVE 191


>gi|294677055|ref|YP_003577670.1| NADH-quinone oxidoreductase subunit B [Rhodobacter capsulatus SB
           1003]
 gi|6647658|sp|O84970|NUOB_RHOCA RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|3282560|gb|AAC24986.1| NUOB [Rhodobacter capsulatus]
 gi|294475875|gb|ADE85263.1| NADH-quinone oxidoreductase, B subunit [Rhodobacter capsulatus SB
           1003]
          Length = 177

 Score =  276 bits (705), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 124/155 (80%), Positives = 141/155 (90%)

Query: 29  ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88
           ++ ++  KGFL+T+ + ++ WAR GSL WMTFGLACCAVEMM  +MPRYD+ER+GFAPRA
Sbjct: 21  LNRDLQDKGFLLTTAEDIINWARNGSLHWMTFGLACCAVEMMHTAMPRYDVERYGFAPRA 80

Query: 89  SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 148
           SPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR
Sbjct: 81  SPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 140

Query: 149 IVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           IVPVDIYVPGCPP+AEAL+YGIL LQ+KIRR G +
Sbjct: 141 IVPVDIYVPGCPPSAEALMYGILQLQRKIRRTGTL 175


>gi|87200316|ref|YP_497573.1| NADH dehydrogenase subunit B [Novosphingobium aromaticivorans DSM
           12444]
 gi|123488910|sp|Q2G5Y4|NUOB_NOVAD RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|87135997|gb|ABD26739.1| NADH dehydrogenase subunit B [Novosphingobium aromaticivorans DSM
           12444]
          Length = 181

 Score =  276 bits (705), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 125/161 (77%), Positives = 143/161 (88%)

Query: 24  ADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFG 83
           A F  +++E+  KGFLVTS ++L  WARTGSL WMTFGLACCAVEM+  +MPRYD+ERFG
Sbjct: 20  AFFDSLNAEVNDKGFLVTSTEELFQWARTGSLWWMTFGLACCAVEMIHVNMPRYDMERFG 79

Query: 84  FAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVV 143
            APRASPRQSDVMIVAGTL NKMA ALR+VYDQM +P+YVISMGSCANGGGYYHYSYSVV
Sbjct: 80  VAPRASPRQSDVMIVAGTLCNKMAPALRKVYDQMSDPKYVISMGSCANGGGYYHYSYSVV 139

Query: 144 RGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           RGCDRIVPVDIYVPGCPPTAEAL+YG++ LQ+KIRR G ++
Sbjct: 140 RGCDRIVPVDIYVPGCPPTAEALLYGVMQLQRKIRRAGTLE 180


>gi|326387461|ref|ZP_08209070.1| NADH dehydrogenase subunit B [Novosphingobium nitrogenifigens DSM
           19370]
 gi|326208117|gb|EGD58925.1| NADH dehydrogenase subunit B [Novosphingobium nitrogenifigens DSM
           19370]
          Length = 183

 Score =  276 bits (705), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 125/161 (77%), Positives = 144/161 (89%)

Query: 24  ADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFG 83
           A F  +++E++ KGFLVTS ++L  WARTGSL WMTFGLACCAVEM+  +MPRYD+ERFG
Sbjct: 22  AFFDSLNAEVSDKGFLVTSTEELFQWARTGSLWWMTFGLACCAVEMIHVNMPRYDMERFG 81

Query: 84  FAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVV 143
            APRASPRQSDVMIVAGTL NKMA ALR+VYDQM +P+YVISMGSCANGGGYYHYSYSVV
Sbjct: 82  VAPRASPRQSDVMIVAGTLCNKMAPALRKVYDQMSDPKYVISMGSCANGGGYYHYSYSVV 141

Query: 144 RGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           RGCDRIVPVDIYVPGCPPTAEAL+YG++ LQ+KIRR G ++
Sbjct: 142 RGCDRIVPVDIYVPGCPPTAEALLYGVMQLQRKIRRAGTLE 182


>gi|332185849|ref|ZP_08387596.1| NADH-quinone oxidoreductase, B subunit [Sphingomonas sp. S17]
 gi|332014207|gb|EGI56265.1| NADH-quinone oxidoreductase, B subunit [Sphingomonas sp. S17]
          Length = 194

 Score =  275 bits (704), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 126/159 (79%), Positives = 142/159 (89%)

Query: 26  FSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA 85
           F  ++ E+T KGFLVTS ++L  WARTGSL WMTFGLACCAVEM+  +MPRYD+ERFG A
Sbjct: 35  FDGLNGELTDKGFLVTSTEELFQWARTGSLWWMTFGLACCAVEMIHVNMPRYDMERFGAA 94

Query: 86  PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRG 145
           PRASPRQSDVMIVAGTL NKMA ALRRVYDQM  P+YVISMGSCANGGGYYHYSYSVVRG
Sbjct: 95  PRASPRQSDVMIVAGTLCNKMAPALRRVYDQMSNPKYVISMGSCANGGGYYHYSYSVVRG 154

Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           CDRIVPVDIYVPGCPPTAEAL+YG++ LQ+KIRR G+++
Sbjct: 155 CDRIVPVDIYVPGCPPTAEALLYGVMQLQRKIRRAGSIE 193


>gi|254294103|ref|YP_003060126.1| NADH-quinone oxidoreductase subunit beta [Hirschia baltica ATCC
           49814]
 gi|254042634|gb|ACT59429.1| NADH-quinone oxidoreductase, B subunit [Hirschia baltica ATCC
           49814]
          Length = 188

 Score =  275 bits (703), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 128/183 (69%), Positives = 150/183 (81%)

Query: 1   MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTF 60
           M   TVN    +  +S  +   D  F+ +S E+  KGF+V  +D  ++WARTGSLM+M+F
Sbjct: 4   MSTPTVNSAQSASDASAKIRGDDPFFAGVSDELADKGFVVAKLDDAISWARTGSLMFMSF 63

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           GLACCAVEMM A+ PRYD+ERFG APR +PRQSD+MIVAGTLTNKMA A+R+VYDQM EP
Sbjct: 64  GLACCAVEMMHAANPRYDMERFGMAPRGTPRQSDLMIVAGTLTNKMAPAMRKVYDQMAEP 123

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD+YVPGCPPTAEAL+YG+L LQKKIRR 
Sbjct: 124 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALMYGLLQLQKKIRRE 183

Query: 181 GNV 183
           G +
Sbjct: 184 GTI 186


>gi|85374165|ref|YP_458227.1| NADH dehydrogenase subunit B [Erythrobacter litoralis HTCC2594]
 gi|84787248|gb|ABC63430.1| NuoB, NADH dehydrogenase I, B subunit [Erythrobacter litoralis
           HTCC2594]
          Length = 217

 Score =  275 bits (702), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 126/168 (75%), Positives = 145/168 (86%), Gaps = 1/168 (0%)

Query: 18  SLEKVDAD-FSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPR 76
            + + D D F+ + +E+  KGFLVTS + L  WARTGSL WMTFGLACCAVEM+  +MPR
Sbjct: 49  EVRQPDGDYFNALQTEVNDKGFLVTSTEDLFQWARTGSLWWMTFGLACCAVEMIHVNMPR 108

Query: 77  YDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY 136
           YD+ERFG APRASPRQSDVMIVAGTL NKMA ALR+VYDQM +P+YVISMGSCANGGGYY
Sbjct: 109 YDMERFGAAPRASPRQSDVMIVAGTLCNKMAPALRKVYDQMSDPKYVISMGSCANGGGYY 168

Query: 137 HYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           HYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG++ LQ+KIRR G ++
Sbjct: 169 HYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGVMQLQRKIRRSGTIE 216


>gi|85708754|ref|ZP_01039820.1| NADH dehydrogenase-ubiquinone oxidoreductase, chain B
           [Erythrobacter sp. NAP1]
 gi|85690288|gb|EAQ30291.1| NADH dehydrogenase-ubiquinone oxidoreductase, chain B
           [Erythrobacter sp. NAP1]
          Length = 197

 Score =  275 bits (702), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 126/168 (75%), Positives = 145/168 (86%), Gaps = 1/168 (0%)

Query: 18  SLEKVDADFSR-ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPR 76
            + + D D+ R + +E+  KGFLVTS + L  WARTGSL WMTFGLACCAVEM+  +MPR
Sbjct: 29  EVRQPDEDYFRSLQTEVNDKGFLVTSTEDLFQWARTGSLWWMTFGLACCAVEMIHVNMPR 88

Query: 77  YDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY 136
           YD+ERFG APRASPRQSDVMIVAGTL NKMA ALR+VYDQM +P+YVISMGSCANGGGYY
Sbjct: 89  YDMERFGIAPRASPRQSDVMIVAGTLCNKMAPALRKVYDQMSDPKYVISMGSCANGGGYY 148

Query: 137 HYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           HYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG++ LQ+KIRR G ++
Sbjct: 149 HYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGVMQLQRKIRRSGTIE 196


>gi|94496481|ref|ZP_01303058.1| NuoB, NADH dehydrogenase I, B subunit [Sphingomonas sp. SKA58]
 gi|94424227|gb|EAT09251.1| NuoB, NADH dehydrogenase I, B subunit [Sphingomonas sp. SKA58]
          Length = 172

 Score =  274 bits (701), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 126/163 (77%), Positives = 145/163 (88%), Gaps = 1/163 (0%)

Query: 23  DADF-SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLER 81
           D DF + ++ E++ KGFLVTS ++L  WARTGSL WMTFGLACCAVEM+  +MPRYD+ER
Sbjct: 9   DQDFFNALNGEVSDKGFLVTSTEELFQWARTGSLWWMTFGLACCAVEMIHVNMPRYDMER 68

Query: 82  FGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYS 141
           FG APRASPRQSDVMIVAGTL NKMA ALR+VYDQM  P+YVISMGSCANGGGYYHYSYS
Sbjct: 69  FGAAPRASPRQSDVMIVAGTLCNKMAPALRKVYDQMSNPKYVISMGSCANGGGYYHYSYS 128

Query: 142 VVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           VVRGCDRIVPVDIYVPGCPPTAEAL+YG++ LQ+KIRR+G ++
Sbjct: 129 VVRGCDRIVPVDIYVPGCPPTAEALLYGVMQLQRKIRRIGTIE 171


>gi|103486796|ref|YP_616357.1| NADH dehydrogenase subunit B [Sphingopyxis alaskensis RB2256]
 gi|122985072|sp|Q1GTJ8|NUOB_SPHAL RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|98976873|gb|ABF53024.1| NADH-quinone oxidoreductase, B subunit [Sphingopyxis alaskensis
           RB2256]
          Length = 177

 Score =  274 bits (700), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 126/159 (79%), Positives = 139/159 (87%)

Query: 26  FSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA 85
           F  +S E+  KGFLVTS + L  WARTGSL WMTFGLACCAVEM+  +MPRYD+ERFG A
Sbjct: 18  FDDLSGEVGDKGFLVTSTEDLFNWARTGSLWWMTFGLACCAVEMIHVNMPRYDMERFGVA 77

Query: 86  PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRG 145
           PRASPRQSDVMIVAGTL NKMA ALRRVYDQM  P+YVISMGSCANGGGYYHYSYSVVRG
Sbjct: 78  PRASPRQSDVMIVAGTLCNKMAPALRRVYDQMSNPKYVISMGSCANGGGYYHYSYSVVRG 137

Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           CDRIVPVDIYVPGCPPTAEAL+YG++ LQ+KIRR G ++
Sbjct: 138 CDRIVPVDIYVPGCPPTAEALLYGVMQLQRKIRRTGTIE 176


>gi|218528070|sp|Q2NA61|NUOB_ERYLH RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
          Length = 187

 Score =  273 bits (699), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 126/168 (75%), Positives = 145/168 (86%), Gaps = 1/168 (0%)

Query: 18  SLEKVDAD-FSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPR 76
            + + D D F+ + +E+  KGFLVTS + L  WARTGSL WMTFGLACCAVEM+  +MPR
Sbjct: 19  EVRQPDGDYFNALQTEVNDKGFLVTSTEDLFQWARTGSLWWMTFGLACCAVEMIHVNMPR 78

Query: 77  YDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY 136
           YD+ERFG APRASPRQSDVMIVAGTL NKMA ALR+VYDQM +P+YVISMGSCANGGGYY
Sbjct: 79  YDMERFGAAPRASPRQSDVMIVAGTLCNKMAPALRKVYDQMSDPKYVISMGSCANGGGYY 138

Query: 137 HYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           HYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG++ LQ+KIRR G ++
Sbjct: 139 HYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGVMQLQRKIRRSGTIE 186


>gi|114327965|ref|YP_745122.1| NADH dehydrogenase subunit B [Granulibacter bethesdensis CGDNIH1]
 gi|122327073|sp|Q0BSK3|NUOB_GRABC RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|114316139|gb|ABI62199.1| NADH-quinone oxidoreductase chain B [Granulibacter bethesdensis
           CGDNIH1]
          Length = 194

 Score =  273 bits (699), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 128/161 (79%), Positives = 142/161 (88%)

Query: 23  DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82
           +A    I+ E+  KGF+V ++D+LV WARTGSL  MTFGLACCAVEM+ A MPRYDL+RF
Sbjct: 31  EAVLRGITGEMADKGFVVANLDKLVNWARTGSLWPMTFGLACCAVEMIHAYMPRYDLDRF 90

Query: 83  GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142
           G  PRASPRQSDVMIVAGTLTNKMA ALRRVYDQMPEPR+VISMGSCANGGGYYHYSYSV
Sbjct: 91  GVIPRASPRQSDVMIVAGTLTNKMAPALRRVYDQMPEPRWVISMGSCANGGGYYHYSYSV 150

Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           VRGCDRIVPVD+YVPGCPPTAEAL+YGI+ LQKKIRR G +
Sbjct: 151 VRGCDRIVPVDVYVPGCPPTAEALVYGIMQLQKKIRRTGTI 191


>gi|266656|sp|P29918|NQO6_PARDE RecName: Full=NADH-quinone oxidoreductase subunit 6; AltName:
           Full=NADH dehydrogenase I subunit 6; AltName: Full=NDH-1
           subunit 6
          Length = 173

 Score =  272 bits (696), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 124/154 (80%), Positives = 138/154 (89%)

Query: 23  DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82
           D   + ++ E+  KGFL+T+ + ++ WAR GSL WMTFGLACCAVEMMQ SMPRYDLERF
Sbjct: 12  DLATAELNRELQDKGFLLTTTEDIINWARNGSLHWMTFGLACCAVEMMQTSMPRYDLERF 71

Query: 83  GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142
           G APRASPRQSD+MIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSV
Sbjct: 72  GTAPRASPRQSDLMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSV 131

Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKK 176
           VRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQ++
Sbjct: 132 VRGCDRIVPVDIYVPGCPPTAEALLYGILQLQRR 165


>gi|162148810|ref|YP_001603271.1| NADH dehydrogenase subunit B [Gluconacetobacter diazotrophicus PAl
           5]
 gi|209545442|ref|YP_002277671.1| NADH dehydrogenase subunit B [Gluconacetobacter diazotrophicus PAl
           5]
 gi|221272394|sp|A9HRU3|NUOB2_GLUDA RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName:
           Full=NADH dehydrogenase I subunit B 2; AltName:
           Full=NDH-1 subunit B 2
 gi|161787387|emb|CAP56982.1| NADH-quinone oxidoreductase chain B [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209533119|gb|ACI53056.1| NADH-quinone oxidoreductase, B subunit [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 191

 Score =  270 bits (690), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 128/161 (79%), Positives = 138/161 (85%)

Query: 23  DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82
           DA    I+ EIT KGF+V S+D+LV W RTGSL  M+FGLACCAVEM+ A MPRYDL+R 
Sbjct: 28  DAVIKGITGEITEKGFVVASLDKLVNWGRTGSLWPMSFGLACCAVEMIHAYMPRYDLDRM 87

Query: 83  GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142
           G  PR SPRQSDVMIVAGTLTNKMA ALRRVYDQM EPR+VISMGSCANGGGYYHYSYSV
Sbjct: 88  GIIPRGSPRQSDVMIVAGTLTNKMAPALRRVYDQMAEPRWVISMGSCANGGGYYHYSYSV 147

Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           VRGCDRIVPVD+YVPGCPPTAEALIYGI  LQKKIRR G +
Sbjct: 148 VRGCDRIVPVDVYVPGCPPTAEALIYGIFQLQKKIRRTGTI 188


>gi|330994055|ref|ZP_08317985.1| NADH-quinone oxidoreductase subunit B 2 [Gluconacetobacter sp.
           SXCC-1]
 gi|329759001|gb|EGG75515.1| NADH-quinone oxidoreductase subunit B 2 [Gluconacetobacter sp.
           SXCC-1]
          Length = 192

 Score =  269 bits (688), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 127/162 (78%), Positives = 140/162 (86%)

Query: 23  DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82
           DA    I+ E+T KGF+V ++D+LV W RTGSL  M+FGLACCAVEM+ A MPRYDL+R 
Sbjct: 29  DAVIKGITGEMTEKGFVVANLDRLVNWGRTGSLWPMSFGLACCAVEMIHAYMPRYDLDRM 88

Query: 83  GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142
           G  PR SPRQSDVMIVAGTLTNKMA ALRRVYDQM EPR+VISMGSCANGGGYYHYSYSV
Sbjct: 89  GIIPRGSPRQSDVMIVAGTLTNKMAPALRRVYDQMAEPRWVISMGSCANGGGYYHYSYSV 148

Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           VRGCDRIVPVD+YVPGCPPTAEALIYGIL LQKKIRR G ++
Sbjct: 149 VRGCDRIVPVDVYVPGCPPTAEALIYGILQLQKKIRRTGTIR 190


>gi|148259933|ref|YP_001234060.1| NADH dehydrogenase subunit B [Acidiphilium cryptum JF-5]
 gi|326403113|ref|YP_004283194.1| NADH-quinone oxidoreductase subunit B [Acidiphilium multivorum
           AIU301]
 gi|218527971|sp|A5FX09|NUOB1_ACICJ RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName:
           Full=NADH dehydrogenase I subunit B 1; AltName:
           Full=NDH-1 subunit B 1
 gi|146401614|gb|ABQ30141.1| NADH dehydrogenase subunit B [Acidiphilium cryptum JF-5]
 gi|325049974|dbj|BAJ80312.1| NADH-quinone oxidoreductase subunit B [Acidiphilium multivorum
           AIU301]
          Length = 186

 Score =  269 bits (687), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 126/155 (81%), Positives = 138/155 (89%)

Query: 29  ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88
           I+ EI  KGF+V ++D+LV WARTGSL  MTFGLACCAVEM+ A MPR+DL+RFG  PR 
Sbjct: 29  ITGEIAGKGFVVANLDRLVNWARTGSLWPMTFGLACCAVEMIHAYMPRWDLDRFGIIPRN 88

Query: 89  SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 148
           SPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDR
Sbjct: 89  SPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDR 148

Query: 149 IVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           IVPVDIYVPGCPPTAEAL+YGI  LQKKIRR G +
Sbjct: 149 IVPVDIYVPGCPPTAEALVYGITQLQKKIRRTGTI 183


>gi|296536155|ref|ZP_06898283.1| NADH dehydrogenase (ubiquinone) subunit B [Roseomonas cervicalis
           ATCC 49957]
 gi|296263526|gb|EFH10023.1| NADH dehydrogenase (ubiquinone) subunit B [Roseomonas cervicalis
           ATCC 49957]
          Length = 184

 Score =  268 bits (685), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 125/161 (77%), Positives = 140/161 (86%)

Query: 23  DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82
           DA    +S EI  KGF+V ++D++V WARTGSL  MTFGLACCAV M+ A MPRYDL+RF
Sbjct: 21  DAVIKGVSGEIEDKGFIVANLDKVVNWARTGSLWPMTFGLACCAVPMIHAYMPRYDLDRF 80

Query: 83  GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142
           G  PR SPRQSDVMIVAGTLTNKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSYSV
Sbjct: 81  GVIPRGSPRQSDVMIVAGTLTNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYSV 140

Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           VRGCDR+VPVD+YVPGCPPTAEAL+YGIL LQKKIRR G++
Sbjct: 141 VRGCDRVVPVDVYVPGCPPTAEALVYGILQLQKKIRRTGSI 181


>gi|296116534|ref|ZP_06835144.1| NADH dehydrogenase subunit B [Gluconacetobacter hansenii ATCC
           23769]
 gi|295976746|gb|EFG83514.1| NADH dehydrogenase subunit B [Gluconacetobacter hansenii ATCC
           23769]
          Length = 192

 Score =  268 bits (685), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 126/161 (78%), Positives = 139/161 (86%)

Query: 23  DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82
           DA    ++ EIT KGF+V ++D++V W RTGSL  M+FGLACCAVEM+ A MPRYDL+R 
Sbjct: 29  DAVIRGVTGEITEKGFVVANLDKIVNWGRTGSLWPMSFGLACCAVEMIHAYMPRYDLDRM 88

Query: 83  GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142
           G  PR SPRQSDVMIVAGTLTNKMA ALRRVYDQM EPR+VISMGSCANGGGYYHYSYSV
Sbjct: 89  GIIPRGSPRQSDVMIVAGTLTNKMAPALRRVYDQMAEPRWVISMGSCANGGGYYHYSYSV 148

Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           VRGCDRIVPVD+YVPGCPPTAEALIYGIL LQKKIRR G +
Sbjct: 149 VRGCDRIVPVDVYVPGCPPTAEALIYGILQLQKKIRRTGTI 189


>gi|295689628|ref|YP_003593321.1| NADH-quinone oxidoreductase subunit B [Caulobacter segnis ATCC
           21756]
 gi|295431531|gb|ADG10703.1| NADH-quinone oxidoreductase, B subunit [Caulobacter segnis ATCC
           21756]
          Length = 192

 Score =  268 bits (685), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 133/162 (82%), Positives = 147/162 (90%)

Query: 23  DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82
           D  F  +S ++  KGF+  + D L+TWARTGSLMWMTFGLACCAVEMMQASMPRYDLER+
Sbjct: 30  DPFFDGVSQQLADKGFITAAADDLITWARTGSLMWMTFGLACCAVEMMQASMPRYDLERY 89

Query: 83  GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142
           GFAPRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYY+YSYSV
Sbjct: 90  GFAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYYYSYSV 149

Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           VRGCDR+VPVDIYVPGCPPTAEAL+YG+L LQKKIRR G ++
Sbjct: 150 VRGCDRVVPVDIYVPGCPPTAEALVYGVLQLQKKIRRTGTIE 191


>gi|221234969|ref|YP_002517405.1| NADH dehydrogenase subunit B [Caulobacter crescentus NA1000]
 gi|238055282|sp|B8GWV5|NUOB_CAUCN RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|220964141|gb|ACL95497.1| NADH-quinone oxidoreductase chain B [Caulobacter crescentus NA1000]
          Length = 200

 Score =  268 bits (685), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 133/162 (82%), Positives = 147/162 (90%)

Query: 23  DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82
           D  F  +S ++  KGF+  + D L+TWARTGSLMWMTFGLACCAVEMMQASMPRYDLER+
Sbjct: 38  DPFFDGVSQQLADKGFITAAADDLITWARTGSLMWMTFGLACCAVEMMQASMPRYDLERY 97

Query: 83  GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142
           GFAPRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYY+YSYSV
Sbjct: 98  GFAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYYYSYSV 157

Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           VRGCDR+VPVDIYVPGCPPTAEAL+YG+L LQKKIRR G ++
Sbjct: 158 VRGCDRVVPVDIYVPGCPPTAEALVYGVLQLQKKIRRTGTIE 199


>gi|16126198|ref|NP_420762.1| NADH dehydrogenase subunit B [Caulobacter crescentus CB15]
 gi|81621086|sp|Q9A6X1|NUOB_CAUCR RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|13423414|gb|AAK23930.1| NADH dehydrogenase I, B subunit [Caulobacter crescentus CB15]
          Length = 193

 Score =  268 bits (684), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 133/162 (82%), Positives = 147/162 (90%)

Query: 23  DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82
           D  F  +S ++  KGF+  + D L+TWARTGSLMWMTFGLACCAVEMMQASMPRYDLER+
Sbjct: 31  DPFFDGVSQQLADKGFITAAADDLITWARTGSLMWMTFGLACCAVEMMQASMPRYDLERY 90

Query: 83  GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142
           GFAPRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYY+YSYSV
Sbjct: 91  GFAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYYYSYSV 150

Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           VRGCDR+VPVDIYVPGCPPTAEAL+YG+L LQKKIRR G ++
Sbjct: 151 VRGCDRVVPVDIYVPGCPPTAEALVYGVLQLQKKIRRTGTIE 192


>gi|167646797|ref|YP_001684460.1| NADH dehydrogenase subunit B [Caulobacter sp. K31]
 gi|218527984|sp|B0SZ51|NUOB_CAUSK RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|167349227|gb|ABZ71962.1| NADH-quinone oxidoreductase, B subunit [Caulobacter sp. K31]
          Length = 196

 Score =  264 bits (674), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 130/162 (80%), Positives = 146/162 (90%)

Query: 23  DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82
           D  F  +S ++  KGF+  + D L+TWARTGSLMWMTFGLACCAVEMM ++MPRYDLER+
Sbjct: 34  DPYFDGLSGQLADKGFVTAAADDLITWARTGSLMWMTFGLACCAVEMMHSAMPRYDLERY 93

Query: 83  GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142
           GFAPRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYY+YSYSV
Sbjct: 94  GFAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYYYSYSV 153

Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           VRGCDRIVP+DIYVPGCPPTAEAL+YG+L LQKKIRR G ++
Sbjct: 154 VRGCDRIVPIDIYVPGCPPTAEALVYGVLQLQKKIRRTGTIE 195


>gi|83311885|ref|YP_422149.1| NADH dehydrogenase subunit B [Magnetospirillum magneticum AMB-1]
 gi|123541537|sp|Q2W3I5|NUOB_MAGMM RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|82946726|dbj|BAE51590.1| NADH:ubiquinone oxidoreductase 20 kD subunit and related Fe-S
           oxidoreductase [Magnetospirillum magneticum AMB-1]
          Length = 186

 Score =  261 bits (667), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 124/161 (77%), Positives = 139/161 (86%)

Query: 23  DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82
           DA    +++EI+ KGF++ SVD +V WARTGSL  MTFGLACCAVEMM A   RYD++RF
Sbjct: 24  DALLKAVTTEISDKGFVLASVDAVVNWARTGSLWPMTFGLACCAVEMMHAGCSRYDMDRF 83

Query: 83  GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142
           G   R SPRQSD+MIVAGTLTNKMA ALRRVYDQM EPR+VISMGSCANGGGYYHYSYSV
Sbjct: 84  GVVFRPSPRQSDLMIVAGTLTNKMAPALRRVYDQMAEPRWVISMGSCANGGGYYHYSYSV 143

Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           VRGCDRIVPVDIYVPGCPP+AEAL+YGIL LQKKIRR G++
Sbjct: 144 VRGCDRIVPVDIYVPGCPPSAEALMYGILQLQKKIRRTGSI 184


>gi|46202360|ref|ZP_00053337.2| COG0377: NADH:ubiquinone oxidoreductase 20 kD subunit and related
           Fe-S oxidoreductases [Magnetospirillum magnetotacticum
           MS-1]
          Length = 186

 Score =  261 bits (666), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 124/161 (77%), Positives = 139/161 (86%)

Query: 23  DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82
           DA    +++EI+ KGF++ SVD +V WARTGSL  MTFGLACCAVEMM A   RYD++RF
Sbjct: 24  DALLKAVTTEISDKGFVLASVDAVVNWARTGSLWPMTFGLACCAVEMMHAGCSRYDMDRF 83

Query: 83  GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142
           G   R SPRQSD+MIVAGTLTNKMA ALRRVYDQM EPR+VISMGSCANGGGYYHYSYSV
Sbjct: 84  GVVFRPSPRQSDLMIVAGTLTNKMAPALRRVYDQMAEPRWVISMGSCANGGGYYHYSYSV 143

Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           VRGCDRIVPVDIYVPGCPP+AEAL+YGIL LQKKIRR G++
Sbjct: 144 VRGCDRIVPVDIYVPGCPPSAEALMYGILQLQKKIRRTGSI 184


>gi|258542721|ref|YP_003188154.1| NADH dehydrogenase subunit B [Acetobacter pasteurianus IFO 3283-01]
 gi|256633799|dbj|BAH99774.1| NADH-quinone oxidoreductase chain B [Acetobacter pasteurianus IFO
           3283-01]
 gi|256636858|dbj|BAI02827.1| NADH-quinone oxidoreductase chain B [Acetobacter pasteurianus IFO
           3283-03]
 gi|256639911|dbj|BAI05873.1| NADH-quinone oxidoreductase chain B [Acetobacter pasteurianus IFO
           3283-07]
 gi|256642967|dbj|BAI08922.1| NADH-quinone oxidoreductase chain B [Acetobacter pasteurianus IFO
           3283-22]
 gi|256646022|dbj|BAI11970.1| NADH-quinone oxidoreductase chain B [Acetobacter pasteurianus IFO
           3283-26]
 gi|256649075|dbj|BAI15016.1| NADH-quinone oxidoreductase chain B [Acetobacter pasteurianus IFO
           3283-32]
 gi|256652062|dbj|BAI17996.1| NADH-quinone oxidoreductase chain B [Acetobacter pasteurianus IFO
           3283-01-42C]
 gi|256655119|dbj|BAI21046.1| NADH-quinone oxidoreductase chain B [Acetobacter pasteurianus IFO
           3283-12]
          Length = 186

 Score =  261 bits (666), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 122/161 (75%), Positives = 137/161 (85%)

Query: 23  DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82
           DA    I+  +  KGF+V ++D+LV W RTGSL  M+FGLACCAVEM+ A MPRYDL+R 
Sbjct: 23  DAVVRGITGVLAEKGFVVANLDKLVNWGRTGSLWPMSFGLACCAVEMIHAYMPRYDLDRM 82

Query: 83  GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142
           G  PR SPRQSDVMIVAGTLTNKMA  LRR+Y+QM EPR+VISMGSCANGGGYYHYSYSV
Sbjct: 83  GIIPRGSPRQSDVMIVAGTLTNKMAPVLRRLYEQMAEPRWVISMGSCANGGGYYHYSYSV 142

Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           VRGCDRIVPVD+YVPGCPPTAEALIYGI+LLQKKIRR G +
Sbjct: 143 VRGCDRIVPVDVYVPGCPPTAEALIYGIMLLQKKIRRTGTI 183


>gi|329114679|ref|ZP_08243438.1| NADH-quinone oxidoreductase subunit B 2 [Acetobacter pomorum DM001]
 gi|326696159|gb|EGE47841.1| NADH-quinone oxidoreductase subunit B 2 [Acetobacter pomorum DM001]
          Length = 186

 Score =  261 bits (666), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 122/161 (75%), Positives = 137/161 (85%)

Query: 23  DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82
           DA    I+  +  KGF+V ++D+LV W RTGSL  M+FGLACCAVEM+ A MPRYDL+R 
Sbjct: 23  DAVVRGITGVLAEKGFVVANLDKLVNWGRTGSLWPMSFGLACCAVEMIHAYMPRYDLDRM 82

Query: 83  GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142
           G  PR SPRQSDVMIVAGTLTNKMA  LRR+Y+QM EPR+VISMGSCANGGGYYHYSYSV
Sbjct: 83  GIIPRGSPRQSDVMIVAGTLTNKMAPVLRRLYEQMAEPRWVISMGSCANGGGYYHYSYSV 142

Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           VRGCDRIVPVD+YVPGCPPTAEALIYGI+LLQKKIRR G +
Sbjct: 143 VRGCDRIVPVDVYVPGCPPTAEALIYGIMLLQKKIRRTGTI 183


>gi|144899466|emb|CAM76330.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 186

 Score =  259 bits (662), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 126/186 (67%), Positives = 149/186 (80%), Gaps = 5/186 (2%)

Query: 1   MGLTTVNQKIISGQSSCSLEK---VDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMW 57
           MG+T  N  +++   +  L +    D+    ++ E+  KGF++ +VD+LV WARTGSL  
Sbjct: 1   MGVT--NSGLVTPAHAAPLPQGAAQDSVLKLVTDELEDKGFVLANVDKLVNWARTGSLWP 58

Query: 58  MTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQM 117
           MTFGLACCAVEM+ A   RYD++RFG   R SPRQSDVMIVAGTLTNKMA ALRRVYDQM
Sbjct: 59  MTFGLACCAVEMIHAGCSRYDMDRFGVVFRPSPRQSDVMIVAGTLTNKMAPALRRVYDQM 118

Query: 118 PEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
            EPR+VISMGSCANGGGYYHYSYSVVRGCDR+VPVD+YVPGCPPTAEAL+YGIL LQKKI
Sbjct: 119 AEPRWVISMGSCANGGGYYHYSYSVVRGCDRVVPVDVYVPGCPPTAEALLYGILQLQKKI 178

Query: 178 RRVGNV 183
           RR G++
Sbjct: 179 RRTGSI 184


>gi|194595689|gb|ACF77132.1| NADH dehydrogenase subunit B [Azospirillum brasilense]
          Length = 180

 Score =  259 bits (661), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 124/160 (77%), Positives = 135/160 (84%), Gaps = 1/160 (0%)

Query: 23  DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82
           DA    ++ EI  KGF+    + ++ WARTGSL  MTFGLACCAVEM+ A M RYDL+RF
Sbjct: 18  DAYLRAVTEEIQEKGFITAKYEDVLAWARTGSLWPMTFGLACCAVEMIHAYMSRYDLDRF 77

Query: 83  GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142
           G  PR SPRQSD MIVAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSV
Sbjct: 78  GVIPRPSPRQSDCMIVAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSV 137

Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
           VRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQKKIRR GN
Sbjct: 138 VRGCDRIVPVDIYVPGCPPTAEALVYGILQLQKKIRR-GN 176


>gi|288958988|ref|YP_003449329.1| NADH dehydrogenase I chain B [Azospirillum sp. B510]
 gi|288911296|dbj|BAI72785.1| NADH dehydrogenase I chain B [Azospirillum sp. B510]
          Length = 188

 Score =  258 bits (659), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 124/160 (77%), Positives = 136/160 (85%), Gaps = 1/160 (0%)

Query: 23  DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82
           DA    +S EI  KGF++   + L+ WARTGSL  MTFGLACCAVEM+ A M RYDL+RF
Sbjct: 26  DAYIRAVSDEIQDKGFVLAKYEDLLAWARTGSLWPMTFGLACCAVEMIHAYMSRYDLDRF 85

Query: 83  GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142
           G  PR SPRQSD MIVAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSY+V
Sbjct: 86  GVIPRPSPRQSDCMIVAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYAV 145

Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
           VRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQKKI+R GN
Sbjct: 146 VRGCDRIVPVDIYVPGCPPTAEALVYGILQLQKKIKR-GN 184


>gi|163793188|ref|ZP_02187164.1| excinuclease ABC subunit A [alpha proteobacterium BAL199]
 gi|159181834|gb|EDP66346.1| excinuclease ABC subunit A [alpha proteobacterium BAL199]
          Length = 179

 Score =  257 bits (657), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 123/183 (67%), Positives = 141/183 (77%), Gaps = 6/183 (3%)

Query: 1   MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTF 60
           MG+    + + +G +       DA  S +S EI  KGF++   D+L  WAR GSL  MTF
Sbjct: 1   MGVINAERPVPAGANQ------DAILSAVSDEIREKGFVIAQADKLFNWARCGSLWPMTF 54

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           GLACCAVEMM  +  RYDL+RFG   R SPRQSDVMIVAGTLTNKMA ALR+VYDQM EP
Sbjct: 55  GLACCAVEMMHTAASRYDLDRFGLVFRPSPRQSDVMIVAGTLTNKMAPALRKVYDQMAEP 114

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           R+VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG+L LQ+KI+R 
Sbjct: 115 RWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGVLQLQRKIKRT 174

Query: 181 GNV 183
             +
Sbjct: 175 ATI 177


>gi|294083712|ref|YP_003550469.1| NADH:ubiquinone oxidoreductase 20 kD subunit and related Fe-S
           oxidoreductase [Candidatus Puniceispirillum marinum
           IMCC1322]
 gi|292663284|gb|ADE38385.1| NADH:ubiquinone oxidoreductase 20 kD subunit and related Fe-S
           oxidoreductase [Candidatus Puniceispirillum marinum
           IMCC1322]
          Length = 182

 Score =  256 bits (655), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 118/161 (73%), Positives = 136/161 (84%)

Query: 23  DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82
           DA    +  EIT++GF++   D+L  WAR+GSL  MTFGLACCAVEMM ++  RYD++R+
Sbjct: 19  DAILKAVGDEITNRGFVIAKADKLFNWARSGSLWPMTFGLACCAVEMMHSAASRYDMDRY 78

Query: 83  GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142
           G   R SPRQSDVMIVAGTLTNKMA ALRRVYDQMPEPR+V+SMGSCANGGGYYHYSY+V
Sbjct: 79  GMLFRPSPRQSDVMIVAGTLTNKMAPALRRVYDQMPEPRWVLSMGSCANGGGYYHYSYAV 138

Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           VRGCDRIVPVD+YVPGCPPTAEALIYG+L LQKKIRR   +
Sbjct: 139 VRGCDRIVPVDVYVPGCPPTAEALIYGLLQLQKKIRRTATI 179


>gi|147902669|ref|NP_001087274.1| MGC85267 protein [Xenopus laevis]
 gi|51873813|gb|AAH78494.1| MGC85267 protein [Xenopus laevis]
          Length = 217

 Score =  254 bits (650), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 120/154 (77%), Positives = 136/154 (88%), Gaps = 1/154 (0%)

Query: 27  SRISSEITHKG-FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA 85
           ++ SS  ++KG F++T +D+LV WAR  SL  MTFGLACCAVEMM  + PRYD++RFG  
Sbjct: 54  AKKSSLPSNKGEFVITKLDELVNWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVV 113

Query: 86  PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRG 145
            RASPRQ+DVMIVAGTLTNKMA ALR+VYDQMPEPRYV+SMGSCANGGGYYHYSYSVVRG
Sbjct: 114 FRASPRQADVMIVAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGYYHYSYSVVRG 173

Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           CDRIVPVDIYVPGCPPTAEAL+YGIL LQKKI+R
Sbjct: 174 CDRIVPVDIYVPGCPPTAEALLYGILQLQKKIKR 207


>gi|118404166|ref|NP_001072396.1| NADH dehydrogenase (ubiquinone) Fe-S protein 7, 20kDa
           (NADH-coenzyme Q reductase) [Xenopus (Silurana)
           tropicalis]
 gi|113197754|gb|AAI21597.1| hypothetical protein MGC147194 [Xenopus (Silurana) tropicalis]
          Length = 217

 Score =  254 bits (648), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 121/166 (72%), Positives = 140/166 (84%), Gaps = 1/166 (0%)

Query: 20  EKVDADFSRISSEITHKG-FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78
           +K  A  ++ S   ++KG F++T +D+LV WAR  SL  MTFGLACCAVEMM  + PRYD
Sbjct: 47  QKSSAVTAKKSLLPSNKGEFVITKLDELVNWARRSSLWPMTFGLACCAVEMMHMAAPRYD 106

Query: 79  LERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY 138
           ++RFG   RASPRQ+DVMIVAGTLTNKMA ALR+VYDQMPEPRYV+SMGSCANGGGYYHY
Sbjct: 107 MDRFGVVFRASPRQADVMIVAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGYYHY 166

Query: 139 SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           SYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQKKI+R   ++
Sbjct: 167 SYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKIKREKRLR 212


>gi|315583009|ref|NP_001186841.1| NADH dehydrogenase (ubiquinone) Fe-S protein 7, (NADH-coenzyme Q
           reductase) [Danio rerio]
          Length = 217

 Score =  253 bits (647), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 124/175 (70%), Positives = 143/175 (81%), Gaps = 4/175 (2%)

Query: 14  QSSCSL---EKVDADFSRISSEITHKG-FLVTSVDQLVTWARTGSLMWMTFGLACCAVEM 69
            SSC +   EK  A  ++ +S ++ KG +++T +D LV WAR  SL  MTFGLACCAVEM
Sbjct: 38  NSSCLVPFREKSTALAAKPASAVSSKGEYVITKLDDLVNWARRSSLWPMTFGLACCAVEM 97

Query: 70  MQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSC 129
           M  + PRYD++RFG   RASPRQ+DVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSC
Sbjct: 98  MHMAAPRYDMDRFGVVFRASPRQADVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSC 157

Query: 130 ANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           ANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG L LQ+KI+R   +K
Sbjct: 158 ANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGTLQLQRKIKREKRMK 212


>gi|138519723|gb|AAI35870.1| hypothetical protein MGC147194 [Xenopus (Silurana) tropicalis]
          Length = 217

 Score =  253 bits (646), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 120/166 (72%), Positives = 140/166 (84%), Gaps = 1/166 (0%)

Query: 20  EKVDADFSRISSEITHKG-FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78
           +K  A  ++ S   ++KG F++T +D+LV WAR  SL  MTFGLACCAVEMM  + PRYD
Sbjct: 47  QKSSAVTAKKSLLPSNKGEFVITKLDELVNWARRSSLWPMTFGLACCAVEMMHMAAPRYD 106

Query: 79  LERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY 138
           ++RFG   RASPRQ+DVM+VAGTLTNKMA ALR+VYDQMPEPRYV+SMGSCANGGGYYHY
Sbjct: 107 MDRFGVVFRASPRQADVMVVAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGYYHY 166

Query: 139 SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           SYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQKKI+R   ++
Sbjct: 167 SYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKIKREKRLR 212


>gi|153875120|ref|ZP_02003055.1| NADH-quinone oxidoreductase, B subunit [Beggiatoa sp. PS]
 gi|152068417|gb|EDN66946.1| NADH-quinone oxidoreductase, B subunit [Beggiatoa sp. PS]
          Length = 160

 Score =  253 bits (645), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 117/151 (77%), Positives = 130/151 (86%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           I  +GF+ T+ D+L+ WARTGS+  MTFGLACCAVEMMQA   RYDL+RFG   R SPRQ
Sbjct: 6   ILQEGFVTTTADRLINWARTGSMWPMTFGLACCAVEMMQAGASRYDLDRFGIVFRPSPRQ 65

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           SDVMIVAGTLTNKMA ALR+VYDQMP PR+VISMGSCANGGGYYHYSYSVVRGCDRIVPV
Sbjct: 66  SDVMIVAGTLTNKMAPALRKVYDQMPNPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPV 125

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           DIY+PGCPPTAEAL+YGIL LQ KI+R   +
Sbjct: 126 DIYIPGCPPTAEALLYGILQLQNKIKRTNTI 156


>gi|318054193|ref|NP_001187743.1| mitochondrial NADH dehydrogenase (ubiquinone) iron-sulfur protein 7
           [Ictalurus punctatus]
 gi|308323857|gb|ADO29064.1| mitochondrial NADH dehydrogenase (ubiquinone) iron-sulfur protein 7
           [Ictalurus punctatus]
          Length = 217

 Score =  253 bits (645), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 120/166 (72%), Positives = 138/166 (83%), Gaps = 1/166 (0%)

Query: 20  EKVDADFSRISSEITHKG-FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78
           EK  A   + +S ++ KG +++T +D LV WAR  SL  MTFGLACCAVEMM  + PRYD
Sbjct: 47  EKSTAVALKPTSAVSSKGEYVITKLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPRYD 106

Query: 79  LERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY 138
           ++RFG   RASPRQ+DVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHY
Sbjct: 107 MDRFGVVFRASPRQADVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHY 166

Query: 139 SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           SYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG L LQ+KI+R   ++
Sbjct: 167 SYSVVRGCDRIVPVDIYVPGCPPTAEALLYGTLQLQRKIKREKKMR 212


>gi|148236498|ref|NP_001088930.1| NADH dehydrogenase (ubiquinone) Fe-S protein 7, 20kDa
           (NADH-coenzyme Q reductase) [Xenopus laevis]
 gi|57032922|gb|AAH88820.1| LOC496303 protein [Xenopus laevis]
          Length = 180

 Score =  252 bits (644), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 119/160 (74%), Positives = 137/160 (85%), Gaps = 1/160 (0%)

Query: 26  FSRISSEITHKG-FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF 84
             + +S  ++KG F++T +D+LV WAR  SL  MTFGLACCAVEMM  + PRYD++RFG 
Sbjct: 16  LQKKTSLPSNKGEFVITKLDELVNWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGV 75

Query: 85  APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR 144
             RASPRQ+DVMIVAGTLTNKMA ALR+VYDQMPEPRYV+SMGSCANGGGYYHYSYSVVR
Sbjct: 76  VFRASPRQADVMIVAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGYYHYSYSVVR 135

Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           GCDRIVPVDIYVPGCPPTAEAL+YGIL LQKKI+R   ++
Sbjct: 136 GCDRIVPVDIYVPGCPPTAEALLYGILQLQKKIKREKRLR 175


>gi|289207894|ref|YP_003459960.1| NADH-quinone oxidoreductase subunit beta [Thioalkalivibrio sp.
           K90mix]
 gi|288943525|gb|ADC71224.1| NADH-quinone oxidoreductase, B subunit [Thioalkalivibrio sp.
           K90mix]
          Length = 158

 Score =  251 bits (642), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 117/151 (77%), Positives = 129/151 (85%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           +  KGF+ TS D+L+ WARTGSL  MTFGLACCAVEMM A   RYDL+RFG   R SPRQ
Sbjct: 6   VLEKGFVTTSADKLINWARTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGIIFRPSPRQ 65

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           SDVMIVAGTL NKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSY+VVRGCDRIVPV
Sbjct: 66  SDVMIVAGTLVNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYAVVRGCDRIVPV 125

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           D+YVPGCPPTAEAL+YGI+ LQ KIRR   +
Sbjct: 126 DVYVPGCPPTAEALLYGIIQLQNKIRRTNTI 156


>gi|308321280|gb|ADO27792.1| mitochondrial NADH dehydrogenase iron-sulfur protein 7 [Ictalurus
           furcatus]
          Length = 217

 Score =  251 bits (641), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 117/151 (77%), Positives = 132/151 (87%), Gaps = 1/151 (0%)

Query: 30  SSEITHKG-FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88
           +S ++ KG +++T +D LV WAR  SL  MTFGLACCAVEMM  + PRYD++RFG   RA
Sbjct: 57  TSAVSSKGEYVITKLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRA 116

Query: 89  SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 148
           SPRQ+DVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR
Sbjct: 117 SPRQADVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 176

Query: 149 IVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           IVPVDIYVPGCPPTAEAL+YG L LQ+KI+R
Sbjct: 177 IVPVDIYVPGCPPTAEALLYGTLQLQRKIKR 207


>gi|320167168|gb|EFW44067.1| NADH2 dehydrogenase subunit 22K [Capsaspora owczarzaki ATCC 30864]
          Length = 206

 Score =  251 bits (641), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 116/166 (69%), Positives = 133/166 (80%)

Query: 19  LEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78
            + + + F    +      F ++ +D LV W RTGS+  MTFGLACCAVEMMQA+  RYD
Sbjct: 36  FKPIKSSFPASLAPANQAEFALSKLDALVNWGRTGSVWPMTFGLACCAVEMMQAAAARYD 95

Query: 79  LERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY 138
            +RFG   RASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHY
Sbjct: 96  FDRFGIVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHY 155

Query: 139 SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           SY+VVRGCDRIVPVD+YVPGCPPTAEAL+YGIL LQKKI+R    +
Sbjct: 156 SYAVVRGCDRIVPVDVYVPGCPPTAEALLYGILQLQKKIKRSNQAQ 201


>gi|198284143|ref|YP_002220464.1| NADH dehydrogenase subunit B [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|218667459|ref|YP_002426797.1| NADH-quinone oxidoreductase, B subunit [Acidithiobacillus
           ferrooxidans ATCC 23270]
 gi|218527940|sp|B5EM21|NUOB1_ACIF5 RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName:
           Full=NADH dehydrogenase I subunit B 1; AltName:
           Full=NDH-1 subunit B 1
 gi|238065067|sp|B7J6H2|NUOB_ACIF2 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|198248664|gb|ACH84257.1| NADH-quinone oxidoreductase, B subunit [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218519672|gb|ACK80258.1| NADH-quinone oxidoreductase, B subunit [Acidithiobacillus
           ferrooxidans ATCC 23270]
          Length = 158

 Score =  251 bits (641), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 117/151 (77%), Positives = 130/151 (86%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           I  KGF+ TS+D +V W+RTGSL  MTFGLACCAVEMM A   RYDL+RFG   R SPRQ
Sbjct: 6   ILEKGFVTTSIDTVVNWSRTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGLLFRPSPRQ 65

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           SD+MIVAGTL NKMA ALR+VYDQMPEPR+V+SMGSCANGGGYYHYSYSVVRGCDRIVPV
Sbjct: 66  SDLMIVAGTLVNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIVPV 125

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           DIYVPGCPPTAEALI+G++ LQKKIRR   +
Sbjct: 126 DIYVPGCPPTAEALIFGLIQLQKKIRRTNTI 156


>gi|117926908|ref|YP_867525.1| NADH-quinone oxidoreductase subunit beta [Magnetococcus sp. MC-1]
 gi|238065166|sp|A0LDS6|NUOB_MAGSM RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|117610664|gb|ABK46119.1| NADH dehydrogenase subunit B [Magnetococcus sp. MC-1]
          Length = 167

 Score =  251 bits (641), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 116/158 (73%), Positives = 133/158 (84%)

Query: 26  FSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA 85
              +  E++ +GFL+TS D+LV W R+ S+  MTFGLACCAVEMM A   RYDL+RFG  
Sbjct: 2   IEELHQEVSDRGFLLTSADKLVNWGRSMSMWPMTFGLACCAVEMMNAGASRYDLDRFGVV 61

Query: 86  PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRG 145
            R SPRQSDV+IVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRG
Sbjct: 62  FRGSPRQSDVIIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRG 121

Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           CDRI+PVD+Y+PGCPPTAEA++YGI+ LQKKI R G V
Sbjct: 122 CDRILPVDVYIPGCPPTAEAVMYGIMQLQKKINREGQV 159


>gi|157964436|ref|YP_001499260.1| NADH dehydrogenase subunit B [Rickettsia massiliae MTU5]
 gi|218528019|sp|A8F1C7|NUOB_RICM5 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|157844212|gb|ABV84713.1| NADH dehydrogenase I chain B [Rickettsia massiliae MTU5]
          Length = 174

 Score =  251 bits (641), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 114/156 (73%), Positives = 136/156 (87%)

Query: 29  ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88
           +S+E++++GFL+T VD ++ WAR  SL  MTFGLACCAVEMMQA+  RYD++RFG   R 
Sbjct: 12  LSNELSNRGFLLTKVDNVIGWARANSLWPMTFGLACCAVEMMQAAASRYDMDRFGMLFRP 71

Query: 89  SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 148
           SPRQSD+MIVAGTLTNKMA ALR+VYDQM EP++V+SMGSCANGGGYYH+SYSVVRGCDR
Sbjct: 72  SPRQSDLMIVAGTLTNKMAPALRKVYDQMAEPKWVLSMGSCANGGGYYHFSYSVVRGCDR 131

Query: 149 IVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           IVPVD+YVPGCPPTAEALIYG++ LQKKI+R    K
Sbjct: 132 IVPVDVYVPGCPPTAEALIYGLMQLQKKIKRTTGFK 167


>gi|150406467|ref|YP_001315111.1| NADH dehydrogenase subunit 10 [Chlorokybus atmophyticus]
 gi|126507704|gb|ABO15101.1| NADH dehydrogenase subunit 10 [Chlorokybus atmophyticus]
          Length = 158

 Score =  251 bits (640), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 118/147 (80%), Positives = 128/147 (87%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           +L++ VDQL+ WAR GSL  MTFGLACCAVEMM     RYDL+RFG   R SPRQSDVMI
Sbjct: 7   YLISKVDQLIHWARKGSLWPMTFGLACCAVEMMHTGASRYDLDRFGIIFRPSPRQSDVMI 66

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP
Sbjct: 67  VAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 126

Query: 158 GCPPTAEALIYGILLLQKKIRRVGNVK 184
           GCPPTAEAL+YGIL LQKK++R  N K
Sbjct: 127 GCPPTAEALLYGILQLQKKMKRTKNTK 153


>gi|15892407|ref|NP_360121.1| NADH dehydrogenase subunit B [Rickettsia conorii str. Malish 7]
 gi|34580591|ref|ZP_00142071.1| NADH dehydrogenase I chain B [Rickettsia sibirica 246]
 gi|157828358|ref|YP_001494600.1| NADH dehydrogenase subunit B [Rickettsia rickettsii str. 'Sheila
           Smith']
 gi|165933066|ref|YP_001649855.1| NADH dehydrogenase subunit B [Rickettsia rickettsii str. Iowa]
 gi|238651035|ref|YP_002916892.1| NADH dehydrogenase subunit B [Rickettsia peacockii str. Rustic]
 gi|20139043|sp|Q92ID6|NUOB_RICCN RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|218528020|sp|B0BX73|NUOB_RICRO RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|218528021|sp|A8GRR7|NUOB_RICRS RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|259514688|sp|C4K2P3|NUOB_RICPU RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|15619558|gb|AAL03022.1| NADH dehydrogenase I chain B [Rickettsia conorii str. Malish 7]
 gi|28261976|gb|EAA25480.1| NADH dehydrogenase I chain B [Rickettsia sibirica 246]
 gi|157800839|gb|ABV76092.1| NADH dehydrogenase subunit B [Rickettsia rickettsii str. 'Sheila
           Smith']
 gi|165908153|gb|ABY72449.1| NADH-quinone oxidoreductase chain B [Rickettsia rickettsii str.
           Iowa]
 gi|238625133|gb|ACR47839.1| NADH dehydrogenase subunit B [Rickettsia peacockii str. Rustic]
          Length = 174

 Score =  251 bits (640), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 114/156 (73%), Positives = 136/156 (87%)

Query: 29  ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88
           +S+E++++GFL+T VD ++ WAR  SL  MTFGLACCAVEMMQA+  RYD++RFG   R 
Sbjct: 12  LSNELSNRGFLLTKVDDVIGWARANSLWPMTFGLACCAVEMMQAAASRYDMDRFGMLFRP 71

Query: 89  SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 148
           SPRQSD+MIVAGTLTNKMA ALR+VYDQM EP++V+SMGSCANGGGYYH+SYSVVRGCDR
Sbjct: 72  SPRQSDLMIVAGTLTNKMAPALRKVYDQMAEPKWVLSMGSCANGGGYYHFSYSVVRGCDR 131

Query: 149 IVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           IVPVD+YVPGCPPTAEALIYG++ LQKKI+R    K
Sbjct: 132 IVPVDVYVPGCPPTAEALIYGLMQLQKKIKRTTGFK 167


>gi|229586623|ref|YP_002845124.1| NADH dehydrogenase subunit B [Rickettsia africae ESF-5]
 gi|259514686|sp|C3PN71|NUOB_RICAE RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|228021673|gb|ACP53381.1| NADH dehydrogenase I chain B [Rickettsia africae ESF-5]
          Length = 174

 Score =  251 bits (640), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 114/156 (73%), Positives = 136/156 (87%)

Query: 29  ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88
           +S+E++++GFL+T VD ++ WAR  SL  MTFGLACCAVEMMQA+  RYD++RFG   R 
Sbjct: 12  LSNELSNRGFLLTKVDDVIGWARANSLWPMTFGLACCAVEMMQAAASRYDMDRFGMLFRP 71

Query: 89  SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 148
           SPRQSD+MIVAGTLTNKMA ALR+VYDQM EP++V+SMGSCANGGGYYH+SYSVVRGCDR
Sbjct: 72  SPRQSDLMIVAGTLTNKMAPALRKVYDQMTEPKWVLSMGSCANGGGYYHFSYSVVRGCDR 131

Query: 149 IVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           IVPVD+YVPGCPPTAEALIYG++ LQKKI+R    K
Sbjct: 132 IVPVDVYVPGCPPTAEALIYGLMQLQKKIKRTTGFK 167


>gi|83592891|ref|YP_426643.1| NADH dehydrogenase subunit B [Rhodospirillum rubrum ATCC 11170]
 gi|123526697|sp|Q2RU39|NUOB_RHORT RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|83575805|gb|ABC22356.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit [Rhodospirillum
           rubrum ATCC 11170]
          Length = 185

 Score =  250 bits (639), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 118/159 (74%), Positives = 135/159 (84%)

Query: 23  DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82
           D    +++ EI  KGF++++VD LV WAR GSL  MTFGLACCA+EM+  +  RYDL+RF
Sbjct: 23  DLILGQVAREIEEKGFVLSNVDSLVNWARAGSLWPMTFGLACCALEMIHCACARYDLDRF 82

Query: 83  GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142
           G   R SPRQSDVMIVAGTLTNKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSYSV
Sbjct: 83  GTVFRPSPRQSDVMIVAGTLTNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYSV 142

Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
           VRGCDRIVPVDIYVPGCPPT+EAL+YG+L LQKKI+R G
Sbjct: 143 VRGCDRIVPVDIYVPGCPPTSEALLYGVLQLQKKIKRTG 181


>gi|221108593|ref|XP_002170450.1| PREDICTED: similar to NADH-ubiquinone oxidoreductase Fe-S protein
           7, partial [Hydra magnipapillata]
          Length = 198

 Score =  250 bits (639), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 116/147 (78%), Positives = 128/147 (87%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           F+V  VD LV WAR  SL  MTFGLACCAVEMM  + PRYD++RFG   RASPRQ+DVMI
Sbjct: 47  FVVAKVDDLVNWARRSSLWPMTFGLACCAVEMMHFAAPRYDMDRFGVVFRASPRQADVMI 106

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGTLTNKMA ALRRVYDQMPEPR+VISMGSCANGGGYYHYSY+VVRGCDR+VPVDIYVP
Sbjct: 107 VAGTLTNKMAPALRRVYDQMPEPRWVISMGSCANGGGYYHYSYAVVRGCDRVVPVDIYVP 166

Query: 158 GCPPTAEALIYGILLLQKKIRRVGNVK 184
           GCPPTAEAL+YG+L LQKKI+R   +K
Sbjct: 167 GCPPTAEALLYGVLQLQKKIKRTREIK 193


>gi|220934163|ref|YP_002513062.1| NADH-quinone oxidoreductase, B subunit [Thioalkalivibrio sp.
           HL-EbGR7]
 gi|238065221|sp|B8GNY6|NUOB_THISH RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|219995473|gb|ACL72075.1| NADH-quinone oxidoreductase, B subunit [Thioalkalivibrio sp.
           HL-EbGR7]
          Length = 158

 Score =  250 bits (639), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 118/151 (78%), Positives = 128/151 (84%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           +  KGF+ TS D+L+ WARTGSL  MTFGLACCAVEMM A   RYDL+RFG   R SPRQ
Sbjct: 6   VLEKGFVTTSADKLINWARTGSLWPMTFGLACCAVEMMHAGASRYDLDRFGVVFRPSPRQ 65

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           SDVMIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSY+VVRGCDRIVPV
Sbjct: 66  SDVMIVAGTLVNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYAVVRGCDRIVPV 125

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           DIYVPGCPPTAEAL+YGIL LQ KIRR   +
Sbjct: 126 DIYVPGCPPTAEALLYGILQLQNKIRRTNTI 156


>gi|326934474|ref|XP_003213314.1| PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 7,
           mitochondrial-like, partial [Meleagris gallopavo]
          Length = 212

 Score =  250 bits (639), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 120/165 (72%), Positives = 136/165 (82%), Gaps = 1/165 (0%)

Query: 21  KVDADFSRISSEITHKG-FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDL 79
           K  A   + S   T +G ++VT +D L+ WAR  SL  MTFGLACCAVEMM  + PRYD+
Sbjct: 43  KSSAVLPKKSYVPTSRGEYIVTKLDDLINWARRSSLWPMTFGLACCAVEMMHMAAPRYDM 102

Query: 80  ERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS 139
           +RFG   RASPRQ+DVMIVAGTLTNKMA ALR+VYDQMPEPRYV+SMGSCANGGGYYHYS
Sbjct: 103 DRFGVVFRASPRQADVMIVAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGYYHYS 162

Query: 140 YSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           YSVVRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQKKI+R   ++
Sbjct: 163 YSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKIKREKKIQ 207


>gi|197128812|gb|ACH45310.1| putative NADH dehydrogenase Fe-S protein 7 >Feature gb|DQ213771
           [Taeniopygia guttata]
          Length = 216

 Score =  250 bits (639), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 120/169 (71%), Positives = 138/169 (81%), Gaps = 1/169 (0%)

Query: 12  SGQSSCSLEKVDADFSRISSEITHKG-FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMM 70
           +  SS  ++K  A   R S   + +G +++  +D LV WAR  SL  MTFGLACCAVEMM
Sbjct: 38  AADSSVQVQKSSAVVPRKSYVPSSRGEYVIAKLDDLVNWARRSSLWPMTFGLACCAVEMM 97

Query: 71  QASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCA 130
             + PRYD++RFG   RASPRQ+DVMIVAGTLTNKMA ALR+VYDQMPEPRYV+SMGSCA
Sbjct: 98  HMAAPRYDMDRFGVVFRASPRQADVMIVAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCA 157

Query: 131 NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQ+KI+R
Sbjct: 158 NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQRKIKR 206


>gi|239947491|ref|ZP_04699244.1| NADH-quinone oxidoreductase subunit B [Rickettsia endosymbiont of
           Ixodes scapularis]
 gi|239921767|gb|EER21791.1| NADH-quinone oxidoreductase subunit B [Rickettsia endosymbiont of
           Ixodes scapularis]
          Length = 187

 Score =  250 bits (638), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 114/156 (73%), Positives = 135/156 (86%)

Query: 29  ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88
           ++ E++++GFL+T VD ++ WART SL  MTFGLACCAVEMMQA+  RYD++RFG   R 
Sbjct: 25  LNHELSNRGFLLTKVDDVIGWARTNSLWPMTFGLACCAVEMMQAAASRYDMDRFGMLFRP 84

Query: 89  SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 148
           SPRQSD+MIVAGTLTNKMA ALR+VYDQM EP++V+SMGSCANGGGYYH+SYSVVRGCDR
Sbjct: 85  SPRQSDLMIVAGTLTNKMAPALRKVYDQMAEPKWVLSMGSCANGGGYYHFSYSVVRGCDR 144

Query: 149 IVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           IVPVDIYVPGCPPTAE LIYG++ LQKKI+R    K
Sbjct: 145 IVPVDIYVPGCPPTAETLIYGLMQLQKKIKRTTGFK 180


>gi|157827450|ref|YP_001496514.1| NADH dehydrogenase subunit B [Rickettsia bellii OSU 85-389]
 gi|218528017|sp|A8GX77|NUOB_RICB8 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|157802754|gb|ABV79477.1| NADH dehydrogenase subunit B [Rickettsia bellii OSU 85-389]
          Length = 174

 Score =  250 bits (638), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 113/156 (72%), Positives = 137/156 (87%)

Query: 29  ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88
           +++E++++GFL+T VD ++ WAR+ SL  MTFGLACCAVEMMQA+  RYD++RFG   R 
Sbjct: 12  LNNELSNRGFLLTKVDDVIGWARSNSLWPMTFGLACCAVEMMQAAASRYDMDRFGMLFRP 71

Query: 89  SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 148
           SPRQSD+MIVAGTLTNKMA ALR+VYDQM EP++V+SMGSCANGGGYYH+SYSVVRGCDR
Sbjct: 72  SPRQSDLMIVAGTLTNKMAPALRKVYDQMAEPKWVLSMGSCANGGGYYHFSYSVVRGCDR 131

Query: 149 IVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           IVPVD+YVPGCPPTAEALIYG++ LQKKI+R    K
Sbjct: 132 IVPVDVYVPGCPPTAEALIYGLMQLQKKIKRTTGFK 167


>gi|255019908|ref|ZP_05291983.1| NADH-ubiquinone oxidoreductase chain B [Acidithiobacillus caldus
           ATCC 51756]
 gi|254970688|gb|EET28175.1| NADH-ubiquinone oxidoreductase chain B [Acidithiobacillus caldus
           ATCC 51756]
          Length = 158

 Score =  250 bits (638), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 115/151 (76%), Positives = 130/151 (86%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           +  KGF+ TS+D +V W+RTGSL  MTFGLACCAVEMM A   RYDL+RFG   R SPRQ
Sbjct: 6   VLEKGFVTTSIDTVVNWSRTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGIIFRPSPRQ 65

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           SDVMIVAGTL NKMA ALR+VYDQMPEPR+V+SMGSCANGGGYYHYSYSVVRGCDRIVPV
Sbjct: 66  SDVMIVAGTLVNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIVPV 125

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           D+YVPGCPPTAEAL++G++ LQKKIRR   +
Sbjct: 126 DVYVPGCPPTAEALLFGLIQLQKKIRRTNTI 156


>gi|126323645|ref|XP_001373250.1| PREDICTED: hypothetical protein [Monodelphis domestica]
          Length = 304

 Score =  250 bits (638), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 115/142 (80%), Positives = 127/142 (89%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           +++T +D L+ WAR  SL  MTFGLACCAVEMM  + PRYD++RFG   RASPRQSDVMI
Sbjct: 153 YVITKLDDLINWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQSDVMI 212

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGTLTNKMA ALR+VYDQMPEPRYV+SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP
Sbjct: 213 VAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 272

Query: 158 GCPPTAEALIYGILLLQKKIRR 179
           GCPPTAEAL+YGIL LQKKI+R
Sbjct: 273 GCPPTAEALLYGILQLQKKIKR 294


>gi|21312950|ref|NP_083548.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 7,
           mitochondrial precursor [Mus musculus]
 gi|47117311|sp|Q9DC70|NDUS7_MOUSE RecName: Full=NADH dehydrogenase [ubiquinone] iron-sulfur protein
           7, mitochondrial; AltName: Full=Complex I-20kD;
           Short=CI-20kD; AltName: Full=NADH-ubiquinone
           oxidoreductase 20 kDa subunit; Flags: Precursor
 gi|12833606|dbj|BAB22592.1| unnamed protein product [Mus musculus]
 gi|15488721|gb|AAH13503.1| NADH dehydrogenase (ubiquinone) Fe-S protein 7 [Mus musculus]
 gi|148699633|gb|EDL31580.1| NADH dehydrogenase (ubiquinone) Fe-S protein 7, isoform CRA_b [Mus
           musculus]
          Length = 224

 Score =  250 bits (638), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 115/147 (78%), Positives = 129/147 (87%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           ++VT +D L+ WAR  SL  MTFGLACCAVEMM  + PRYD++RFG   RASPRQ+DVMI
Sbjct: 73  YVVTKLDDLINWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQADVMI 132

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGTLTNKMA ALR+VYDQMPEPRYV+SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP
Sbjct: 133 VAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 192

Query: 158 GCPPTAEALIYGILLLQKKIRRVGNVK 184
           GCPPTAEAL+YGIL LQ+KI+R   +K
Sbjct: 193 GCPPTAEALLYGILQLQRKIKREQKLK 219


>gi|299471504|emb|CBN79990.1| NUO10 homolog, NADH dehydrogenase (ubiquinone) subunit 10
           [Ectocarpus siliculosus]
          Length = 225

 Score =  250 bits (638), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 116/141 (82%), Positives = 126/141 (89%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           F+V+ VD LV WAR GSL  MTFGLACCAVEMM ++  RYDLERFG   RASPRQSDVMI
Sbjct: 74  FVVSKVDDLVNWARKGSLWPMTFGLACCAVEMMHSAASRYDLERFGMVFRASPRQSDVMI 133

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGTL NKMA ALR+VYDQMPEPR+V+SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP
Sbjct: 134 VAGTLCNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 193

Query: 158 GCPPTAEALIYGILLLQKKIR 178
           GCPPTAEAL+YG+L LQKKI+
Sbjct: 194 GCPPTAEALLYGLLQLQKKIK 214


>gi|56606108|ref|NP_001008525.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 7,
           mitochondrial [Rattus norvegicus]
 gi|55824717|gb|AAH86574.1| NADH dehydrogenase (ubiquinone) Fe-S protein 7 [Rattus norvegicus]
 gi|149034571|gb|EDL89308.1| NADH dehydrogenase (ubiquinone) Fe-S protein 7, isoform CRA_d
           [Rattus norvegicus]
          Length = 218

 Score =  250 bits (638), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 115/147 (78%), Positives = 129/147 (87%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           ++VT +D L+ WAR  SL  MTFGLACCAVEMM  + PRYD++RFG   RASPRQ+DVMI
Sbjct: 67  YVVTKLDDLINWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQADVMI 126

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGTLTNKMA ALR+VYDQMPEPRYV+SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP
Sbjct: 127 VAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 186

Query: 158 GCPPTAEALIYGILLLQKKIRRVGNVK 184
           GCPPTAEAL+YGIL LQ+KI+R   +K
Sbjct: 187 GCPPTAEALLYGILQLQRKIKREQKLK 213


>gi|114321118|ref|YP_742801.1| NADH-quinone oxidoreductase, B subunit [Alkalilimnicola ehrlichii
           MLHE-1]
 gi|122311303|sp|Q0A776|NUOB_ALHEH RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|114227512|gb|ABI57311.1| NADH dehydrogenase subunit B [Alkalilimnicola ehrlichii MLHE-1]
          Length = 158

 Score =  249 bits (637), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 116/151 (76%), Positives = 130/151 (86%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           +  KGF+ TS D+++ WARTGS+  MTFGLACCAVEMMQA   RYDL+RFG   R SPRQ
Sbjct: 6   LLEKGFVTTSADKVINWARTGSMWPMTFGLACCAVEMMQAGAARYDLDRFGIIFRPSPRQ 65

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           SDVMIVAGTL NKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDR+VPV
Sbjct: 66  SDVMIVAGTLCNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRVVPV 125

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           D+YVPGCPPTAEALI+GI+ LQKKIR    +
Sbjct: 126 DVYVPGCPPTAEALIWGIMQLQKKIRTTNTI 156


>gi|261856549|ref|YP_003263832.1| NADH-quinone oxidoreductase subunit beta [Halothiobacillus
           neapolitanus c2]
 gi|261837018|gb|ACX96785.1| NADH-quinone oxidoreductase, B subunit [Halothiobacillus
           neapolitanus c2]
          Length = 159

 Score =  249 bits (637), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 117/151 (77%), Positives = 128/151 (84%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           +  KGF+ TS D+L+ WARTGSL  MTFGLACCAVEMM A   RYDL+RFG   R SPRQ
Sbjct: 6   VLEKGFVTTSADKLINWARTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGVVFRPSPRQ 65

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           SDVMIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSY+VVRGCDRIVPV
Sbjct: 66  SDVMIVAGTLVNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYAVVRGCDRIVPV 125

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           DIYVPGCPPTAEAL+YGI+ LQ KIRR   +
Sbjct: 126 DIYVPGCPPTAEALLYGIIQLQNKIRRTNTI 156


>gi|67458958|ref|YP_246582.1| NADH dehydrogenase subunit B [Rickettsia felis URRWXCal2]
 gi|75536604|sp|Q4UM06|NUOB_RICFE RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|67004491|gb|AAY61417.1| NADH dehydrogenase I chain B [Rickettsia felis URRWXCal2]
          Length = 174

 Score =  249 bits (637), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 113/156 (72%), Positives = 136/156 (87%)

Query: 29  ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88
           +++E++++GFL+T VD ++ WAR  SL  MTFGLACCAVEMMQA+  RYD++RFG   R 
Sbjct: 12  LNNELSNRGFLLTKVDDVIGWARANSLWPMTFGLACCAVEMMQAAASRYDMDRFGMLFRP 71

Query: 89  SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 148
           SPRQSD+MIVAGTLTNKMA ALR+VYDQM EP++V+SMGSCANGGGYYH+SYSVVRGCDR
Sbjct: 72  SPRQSDLMIVAGTLTNKMAPALRKVYDQMAEPKWVLSMGSCANGGGYYHFSYSVVRGCDR 131

Query: 149 IVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           IVPVD+YVPGCPPTAEALIYG++ LQKKI+R    K
Sbjct: 132 IVPVDVYVPGCPPTAEALIYGLMQLQKKIKRTTGFK 167


>gi|225707068|gb|ACO09380.1| NADH dehydrogenase iron-sulfur protein 7, mitochondrial precursor
           [Osmerus mordax]
          Length = 220

 Score =  249 bits (636), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 118/147 (80%), Positives = 129/147 (87%), Gaps = 1/147 (0%)

Query: 34  THKG-FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           T KG +++T +D LV WAR  SL  MTFGLACCAVEMM  + PRYD++RFG   RASPRQ
Sbjct: 64  TSKGEYVITKLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQ 123

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           SDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSY+VVRGCDRIVPV
Sbjct: 124 SDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYAVVRGCDRIVPV 183

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179
           DIYVPGCPPTAEAL+YG L LQKKI+R
Sbjct: 184 DIYVPGCPPTAEALLYGTLQLQKKIKR 210


>gi|224007275|ref|XP_002292597.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220971459|gb|EED89793.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 216

 Score =  249 bits (636), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 116/141 (82%), Positives = 126/141 (89%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           + V+ VD LV WAR GSL  MTFGLACCAVEMM A+  RYD+ERFG   RASPRQSDVMI
Sbjct: 65  YAVSRVDDLVNWARKGSLWPMTFGLACCAVEMMHAAASRYDMERFGMVFRASPRQSDVMI 124

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGTLTNKMA ALR+VYDQMPEPR+V+SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP
Sbjct: 125 VAGTLTNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 184

Query: 158 GCPPTAEALIYGILLLQKKIR 178
           GCPPTAEAL+YG+L LQKKI+
Sbjct: 185 GCPPTAEALLYGLLQLQKKIK 205


>gi|297275661|ref|XP_002808210.1| PREDICTED: LOW QUALITY PROTEIN: NADH dehydrogenase [ubiquinone]
           iron-sulfur protein 7, mitochondrial-like [Macaca
           mulatta]
          Length = 362

 Score =  249 bits (636), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 118/179 (65%), Positives = 139/179 (77%)

Query: 6   VNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACC 65
           V+Q + +   S +   +    + +    +   ++V  +D LV WAR  SL  MTFGLACC
Sbjct: 179 VHQSVATDGPSSAQPALPKAGAMVPKPSSRGEYVVAKLDDLVNWARRSSLWPMTFGLACC 238

Query: 66  AVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVIS 125
           AVEMM  + PRYD++RFG   RASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVIS
Sbjct: 239 AVEMMHMAAPRYDMDRFGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVIS 298

Query: 126 MGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           MGSCANGGGYYHYSYSVVRGCDRIVPVDIY+PGCPPTAEAL+YG+L LQ+KI+R   V+
Sbjct: 299 MGSCANGGGYYHYSYSVVRGCDRIVPVDIYIPGCPPTAEALLYGVLQLQRKIKRERKVQ 357


>gi|15604224|ref|NP_220740.1| NADH dehydrogenase subunit B [Rickettsia prowazekii str. Madrid E]
 gi|6647678|sp|Q9ZDH2|NUOB_RICPR RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|3860916|emb|CAA14816.1| NADH DEHYDROGENASE I CHAIN B (nuoB) [Rickettsia prowazekii]
 gi|292571965|gb|ADE29880.1| NADH dehydrogenase I chain B [Rickettsia prowazekii Rp22]
          Length = 174

 Score =  249 bits (636), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 113/156 (72%), Positives = 137/156 (87%)

Query: 29  ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88
           ++S +T++GFL++ VD++++WAR  SL  MTFGLACCAVEMMQA+  RYD++RFG   R 
Sbjct: 12  LNSGLTNRGFLLSKVDEVISWARANSLWPMTFGLACCAVEMMQAAASRYDMDRFGMLFRP 71

Query: 89  SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 148
           SPRQSD+MIVAGTLTNKMA ALR+VYDQM EP++V+SMGSCANGGGYYH+SYSVVRGCDR
Sbjct: 72  SPRQSDLMIVAGTLTNKMAPALRKVYDQMTEPKWVLSMGSCANGGGYYHFSYSVVRGCDR 131

Query: 149 IVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           IVPVD+YVPGCPPTAEALIYG++ LQKKI+R    K
Sbjct: 132 IVPVDVYVPGCPPTAEALIYGLMQLQKKIKRTTGFK 167


>gi|296420699|ref|XP_002839906.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295636113|emb|CAZ84097.1| unnamed protein product [Tuber melanosporum]
          Length = 213

 Score =  249 bits (636), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 118/171 (69%), Positives = 141/171 (82%), Gaps = 3/171 (1%)

Query: 11  ISGQSSCSLEKVDADFSRISSEITHKG---FLVTSVDQLVTWARTGSLMWMTFGLACCAV 67
           ++ + S S+++ +     + S++  KG   +++TS+DQ+  WAR GSL  MTFGLACCAV
Sbjct: 32  LAPRDSSSIDRSNRREVLLPSQVPKKGVMQYVLTSLDQVANWARQGSLWPMTFGLACCAV 91

Query: 68  EMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMG 127
           EMM  S PRYD +R G   RASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPR+V+SMG
Sbjct: 92  EMMHLSTPRYDQDRLGIIFRASPRQSDVMIVAGTLTNKMAPALRQVYDQMPEPRWVVSMG 151

Query: 128 SCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           SCANGGGYYHYSYSVVRGCDRIVPVD+YVPGCPPT+EAL+YGIL LQKK+R
Sbjct: 152 SCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTSEALMYGILQLQKKMR 202


>gi|196002435|ref|XP_002111085.1| predicted protein [Trichoplax adhaerens]
 gi|190587036|gb|EDV27089.1| predicted protein [Trichoplax adhaerens]
          Length = 164

 Score =  249 bits (635), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 115/146 (78%), Positives = 128/146 (87%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           F+V  VD ++ WAR  SL  MTFGLACCA+EMMQ + PRYD++RFG   RASPRQ+DVMI
Sbjct: 13  FVVAKVDDVINWARRSSLWPMTFGLACCAIEMMQFAAPRYDMDRFGIVFRASPRQADVMI 72

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGTLTNKMA A R+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRI+PVDIYVP
Sbjct: 73  VAGTLTNKMAPAFRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVP 132

Query: 158 GCPPTAEALIYGILLLQKKIRRVGNV 183
           GCPPTAEAL+YG LLLQKKIRR  +V
Sbjct: 133 GCPPTAEALLYGFLLLQKKIRRSKSV 158


>gi|167536644|ref|XP_001749993.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163771503|gb|EDQ85168.1| predicted protein [Monosiga brevicollis MX1]
          Length = 218

 Score =  249 bits (635), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 114/154 (74%), Positives = 133/154 (86%), Gaps = 1/154 (0%)

Query: 27  SRISSEITHKG-FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA 85
           S+I + I ++  + +  +D LV WAR GS+  MTFGLACCAVEMM  + PRYD++RFG  
Sbjct: 55  SKIPANIDNRADYALAKLDDLVNWARKGSMWPMTFGLACCAVEMMHVAAPRYDMDRFGIV 114

Query: 86  PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRG 145
            RASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPR+V+SMGSCANGGGYYHYSY+VVRG
Sbjct: 115 FRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYAVVRG 174

Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           CDRIVPVDIYVPGCPPT+EAL+YG+L LQKKI+R
Sbjct: 175 CDRIVPVDIYVPGCPPTSEALLYGLLQLQKKIKR 208


>gi|47217431|emb|CAG00791.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 219

 Score =  249 bits (635), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 115/159 (72%), Positives = 136/159 (85%), Gaps = 1/159 (0%)

Query: 27  SRISSEITHKG-FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA 85
           ++ +S  + KG +++T +D LV WAR  SL  MTFGLACCAVEMM  + PRYD++RFG  
Sbjct: 56  AKPASVASSKGEYVITKLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVV 115

Query: 86  PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRG 145
            RASPRQ+DVMIVAGTLTNKMA ALR+VY+QMPEPRYVISMGSCANGGGYYHYSY+VVRG
Sbjct: 116 FRASPRQADVMIVAGTLTNKMAPALRKVYEQMPEPRYVISMGSCANGGGYYHYSYAVVRG 175

Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           CDRIVPVDIYVPGCPPTAEAL+YG+L LQ+KI+R   ++
Sbjct: 176 CDRIVPVDIYVPGCPPTAEALLYGVLQLQRKIKREKKLR 214


>gi|194212381|ref|XP_001503839.2| PREDICTED: similar to PSST subunit of the NADH: ubiquinone
           oxidoreductase complex [Equus caballus]
          Length = 259

 Score =  248 bits (634), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 119/163 (73%), Positives = 137/163 (84%), Gaps = 1/163 (0%)

Query: 18  SLEKVDADFSRISSEITHKG-FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPR 76
           ++ K  A   + ++  + +G ++VT +D LV WAR  SL  MTFGLACCAVEMM  + PR
Sbjct: 87  AMSKAGAVVPKPTALPSSRGEYVVTKLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPR 146

Query: 77  YDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY 136
           YD++RFG   RASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYV+SMGSCANGGGYY
Sbjct: 147 YDMDRFGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGYY 206

Query: 137 HYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           HYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQ+KI+R
Sbjct: 207 HYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQRKIKR 249


>gi|84000019|ref|NP_001033111.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 7,
           mitochondrial precursor [Bos taurus]
 gi|1171865|sp|P42026|NDUS7_BOVIN RecName: Full=NADH dehydrogenase [ubiquinone] iron-sulfur protein
           7, mitochondrial; AltName: Full=Complex I-20kD;
           Short=CI-20kD; AltName: Full=NADH-ubiquinone
           oxidoreductase 20 kDa subunit; AltName: Full=PSST
           subunit; Flags: Precursor
 gi|599691|emb|CAA46154.1| PSST subunit of the NADH: ubiquinone oxidoreductase complex [Bos
           taurus]
 gi|83638667|gb|AAI09717.1| NADH dehydrogenase (ubiquinone) Fe-S protein 7, 20kDa
           (NADH-coenzyme Q reductase) [Bos taurus]
 gi|296485358|gb|DAA27473.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 7,
           mitochondrial precursor [Bos taurus]
          Length = 216

 Score =  248 bits (634), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 115/142 (80%), Positives = 126/142 (88%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           ++V  +D L+ WAR  SL  MTFGLACCAVEMM  + PRYD++RFG   RASPRQSDVMI
Sbjct: 65  YVVAKLDDLINWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQSDVMI 124

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGTLTNKMA ALR+VYDQMPEPRYV+SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP
Sbjct: 125 VAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 184

Query: 158 GCPPTAEALIYGILLLQKKIRR 179
           GCPPTAEAL+YGIL LQKKI+R
Sbjct: 185 GCPPTAEALLYGILQLQKKIKR 206


>gi|198284345|ref|YP_002220666.1| NADH dehydrogenase subunit B [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|218666644|ref|YP_002427007.1| NADH-quinone oxidoreductase, B subunit [Acidithiobacillus
           ferrooxidans ATCC 23270]
 gi|218527968|sp|B5EN70|NUOB2_ACIF5 RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName:
           Full=NADH dehydrogenase I subunit B 2; AltName:
           Full=NDH-1 subunit B 2
 gi|198248866|gb|ACH84459.1| NADH-quinone oxidoreductase, B subunit [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218518857|gb|ACK79443.1| NADH-quinone oxidoreductase, B subunit [Acidithiobacillus
           ferrooxidans ATCC 23270]
          Length = 158

 Score =  248 bits (634), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 114/151 (75%), Positives = 129/151 (85%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           +  KGF+ T++D +V W RTGSL  MTFGLACCAVEMM A   RYDL+RFG   R SPRQ
Sbjct: 6   LLEKGFVTTTIDTVVNWGRTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGIVFRPSPRQ 65

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           SDVMIVAGTL NKMA ALR+VYDQMPEPR+V+SMGSCANGGGYYHYSYS+VRGCDRIVPV
Sbjct: 66  SDVMIVAGTLVNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSIVRGCDRIVPV 125

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           DIYVPGCPPTAEAL++G++ LQKKIRR   +
Sbjct: 126 DIYVPGCPPTAEALLFGLVQLQKKIRRTNTI 156


>gi|209964549|ref|YP_002297464.1| NADH-quinone oxidoreductase chain B [Rhodospirillum centenum SW]
 gi|238065202|sp|B6ISY0|NUOB_RHOCS RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|209958015|gb|ACI98651.1| NADH-quinone oxidoreductase chain B [Rhodospirillum centenum SW]
          Length = 194

 Score =  248 bits (634), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 120/160 (75%), Positives = 132/160 (82%), Gaps = 1/160 (0%)

Query: 23  DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82
           DA    +  E+  KG+LV   D L+ WARTGSL  MTFGLACCAVEM+ A M RYDL+RF
Sbjct: 31  DAYLQAVQQEMQDKGYLVARFDALMDWARTGSLWPMTFGLACCAVEMIHAYMARYDLDRF 90

Query: 83  GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142
           G  PR SPRQSDVMIVAGT+ NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSYSV
Sbjct: 91  GVIPRPSPRQSDVMIVAGTVCNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYSV 150

Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
           VRG DRIVPVDIYVPGCPPTAEAL+YG+L LQKKI+  GN
Sbjct: 151 VRGVDRIVPVDIYVPGCPPTAEALVYGVLQLQKKIKN-GN 189


>gi|269469169|gb|EEZ80711.1| NADH dehydrogenase I chain B [uncultured SUP05 cluster bacterium]
          Length = 159

 Score =  248 bits (633), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 114/151 (75%), Positives = 131/151 (86%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           +  + F+ TS+D+++ WARTGSL  MTFGLACCAVEMM+A   RYDL+RFG   R +PRQ
Sbjct: 6   LMKESFVTTSLDKVINWARTGSLWPMTFGLACCAVEMMEAGSSRYDLDRFGIVFRPTPRQ 65

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           SD+MIVAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSY+VVRGCDRIVPV
Sbjct: 66  SDLMIVAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYAVVRGCDRIVPV 125

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           D+YVPGCPPTAEAL+YGIL LQ KIRR   +
Sbjct: 126 DVYVPGCPPTAEALLYGILQLQDKIRRTNTI 156


>gi|307206424|gb|EFN84462.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 7,
           mitochondrial [Harpegnathos saltator]
          Length = 224

 Score =  248 bits (633), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 113/147 (76%), Positives = 129/147 (87%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           + +  VD L+ W R GSL  MTFGLACCAVEMM  + PRYD++RFG   RASPRQSD +I
Sbjct: 73  YALARVDDLLNWGRKGSLWPMTFGLACCAVEMMHIAAPRYDMDRFGVVFRASPRQSDCII 132

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGTLTNKMASALR++YDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRI+PVDIYVP
Sbjct: 133 VAGTLTNKMASALRKIYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVP 192

Query: 158 GCPPTAEALIYGILLLQKKIRRVGNVK 184
           GCPPTAEAL+YG+L LQKKI+R+ NV+
Sbjct: 193 GCPPTAEALLYGVLQLQKKIKRMQNVQ 219


>gi|260800203|ref|XP_002595024.1| hypothetical protein BRAFLDRAFT_99644 [Branchiostoma floridae]
 gi|229280264|gb|EEN51035.1| hypothetical protein BRAFLDRAFT_99644 [Branchiostoma floridae]
          Length = 194

 Score =  248 bits (633), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 116/142 (81%), Positives = 126/142 (88%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           F+V  +D LV WAR  SL  MTFGLACCAVEMM  + PRYD++RFG   RASPRQ+DVMI
Sbjct: 43  FVVARLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQADVMI 102

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGTLTNKMA ALR+VYDQMPEPRYV+SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP
Sbjct: 103 VAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 162

Query: 158 GCPPTAEALIYGILLLQKKIRR 179
           GCPPTAEAL+YGIL LQKKI+R
Sbjct: 163 GCPPTAEALLYGILQLQKKIKR 184


>gi|198285499|gb|ACH85288.1| NADH-ubiquinone oxidoreductase Fe-S protein 7 [Salmo salar]
          Length = 215

 Score =  248 bits (633), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 114/142 (80%), Positives = 126/142 (88%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           +++T +D LV WAR  SL  MTFGLACCAVEMM  + PRYD++RFG   RASPRQ+DVMI
Sbjct: 64  YVITKLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQADVMI 123

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSY+VVRGCDRIVPVDIYVP
Sbjct: 124 VAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYAVVRGCDRIVPVDIYVP 183

Query: 158 GCPPTAEALIYGILLLQKKIRR 179
           GCPPTAEAL+YG L LQKKI+R
Sbjct: 184 GCPPTAEALLYGTLQLQKKIKR 205


>gi|51473550|ref|YP_067307.1| NADH dehydrogenase subunit B [Rickettsia typhi str. Wilmington]
 gi|81390150|sp|Q68X17|NUOB_RICTY RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|51459862|gb|AAU03825.1| NADH dehydrogenase (ubiquinone) subunit B [Rickettsia typhi str.
           Wilmington]
          Length = 171

 Score =  248 bits (633), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 112/156 (71%), Positives = 137/156 (87%)

Query: 29  ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88
           ++S +T++GFL++ +D++++WAR  SL  MTFGLACCAVEMMQA+  RYD++RFG   R 
Sbjct: 12  LNSCLTNRGFLLSKIDEVISWARANSLWPMTFGLACCAVEMMQAAASRYDMDRFGMLFRP 71

Query: 89  SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 148
           SPRQSD+MIVAGTLTNKMA ALR+VYDQM EP++V+SMGSCANGGGYYH+SYSVVRGCDR
Sbjct: 72  SPRQSDLMIVAGTLTNKMAPALRKVYDQMTEPKWVLSMGSCANGGGYYHFSYSVVRGCDR 131

Query: 149 IVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           IVPVD+YVPGCPPTAEALIYG++ LQKKI+R    K
Sbjct: 132 IVPVDVYVPGCPPTAEALIYGLMQLQKKIKRTTGFK 167


>gi|73987562|ref|XP_533960.2| PREDICTED: similar to NADH-ubiquinone oxidoreductase Fe-S protein 7
           [Canis familiaris]
          Length = 216

 Score =  248 bits (633), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 114/147 (77%), Positives = 128/147 (87%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           ++V  +D L+ WAR  SL  MTFGLACCAVEMM  + PRYD++RFG   RASPRQSDVMI
Sbjct: 65  YVVAKLDDLINWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQSDVMI 124

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGTLTNKMA ALR+VYDQMPEPRYV+SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP
Sbjct: 125 VAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 184

Query: 158 GCPPTAEALIYGILLLQKKIRRVGNVK 184
           GCPPTAEAL+YGIL LQ+KI+R   ++
Sbjct: 185 GCPPTAEALLYGILQLQRKIKREKKLR 211


>gi|157803902|ref|YP_001492451.1| NADH dehydrogenase subunit B [Rickettsia canadensis str. McKiel]
 gi|218528018|sp|A8EZ83|NUOB_RICCK RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|157785165|gb|ABV73666.1| NADH dehydrogenase beta subunit [Rickettsia canadensis str. McKiel]
          Length = 174

 Score =  248 bits (633), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 112/156 (71%), Positives = 136/156 (87%)

Query: 29  ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88
           ++++++++GFL+T VD ++ WAR  SL  MTFGLACCAVEMMQA+  RYD++RFG   R 
Sbjct: 12  LNNKLSNRGFLLTKVDDVIGWARANSLWPMTFGLACCAVEMMQAAASRYDMDRFGMLFRP 71

Query: 89  SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 148
           SPRQSD+MIVAGTLTNKMA ALR+VYDQM EP++V+SMGSCANGGGYYH+SYSVVRGCDR
Sbjct: 72  SPRQSDLMIVAGTLTNKMAPALRKVYDQMAEPKWVLSMGSCANGGGYYHFSYSVVRGCDR 131

Query: 149 IVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           IVPVDIY+PGCPPTAEALIYG++ LQKKI+R    K
Sbjct: 132 IVPVDIYIPGCPPTAEALIYGLMQLQKKIKRTTGFK 167


>gi|209730616|gb|ACI66177.1| NADH dehydrogenase iron-sulfur protein 7, mitochondrial precursor
           [Salmo salar]
 gi|209731354|gb|ACI66546.1| NADH dehydrogenase iron-sulfur protein 7, mitochondrial precursor
           [Salmo salar]
 gi|223646164|gb|ACN09840.1| NADH dehydrogenase iron-sulfur protein 7, mitochondrial precursor
           [Salmo salar]
 gi|223672011|gb|ACN12187.1| NADH dehydrogenase iron-sulfur protein 7, mitochondrial precursor
           [Salmo salar]
 gi|303660793|gb|ADM16006.1| NADH dehydrogenase iron-sulfur protein 7, mitochondrial precursor
           [Salmo salar]
          Length = 220

 Score =  248 bits (632), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 114/142 (80%), Positives = 126/142 (88%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           +++T +D LV WAR  SL  MTFGLACCAVEMM  + PRYD++RFG   RASPRQ+DVMI
Sbjct: 69  YVITKLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQADVMI 128

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSY+VVRGCDRIVPVDIYVP
Sbjct: 129 VAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYAVVRGCDRIVPVDIYVP 188

Query: 158 GCPPTAEALIYGILLLQKKIRR 179
           GCPPTAEAL+YG L LQKKI+R
Sbjct: 189 GCPPTAEALLYGTLQLQKKIKR 210


>gi|319943349|ref|ZP_08017631.1| NADH-quinone oxidoreductase subunit B [Lautropia mirabilis ATCC
           51599]
 gi|319743164|gb|EFV95569.1| NADH-quinone oxidoreductase subunit B [Lautropia mirabilis ATCC
           51599]
          Length = 159

 Score =  248 bits (632), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 115/151 (76%), Positives = 130/151 (86%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           + ++GF+ T+VD+L+ W RTGSL  MTFGLACCAVEM+ A + RYDL+RFG   R SPR 
Sbjct: 6   VLNEGFVTTNVDKLINWTRTGSLWAMTFGLACCAVEMIHAGVSRYDLDRFGVIFRPSPRH 65

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           SDVMIVAGTL NKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPV
Sbjct: 66  SDVMIVAGTLCNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPV 125

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           DIYVPGCPPTAEALIYGI+ LQ+KIR    +
Sbjct: 126 DIYVPGCPPTAEALIYGIIQLQRKIRETNTI 156


>gi|229366862|gb|ACQ58411.1| NADH dehydrogenase iron-sulfur protein 7, mitochondrial precursor
           [Anoplopoma fimbria]
          Length = 219

 Score =  248 bits (632), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 114/147 (77%), Positives = 127/147 (86%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           + +T +D L+ WAR  SL  MTFGLACCAVEMM  + PRYD++RFG   RASPRQ+DVMI
Sbjct: 68  YAITKLDDLINWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQADVMI 127

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP
Sbjct: 128 VAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 187

Query: 158 GCPPTAEALIYGILLLQKKIRRVGNVK 184
           GCPPTAEAL+YG L LQKKI+R   ++
Sbjct: 188 GCPPTAEALLYGTLQLQKKIKREKKLR 214


>gi|254491467|ref|ZP_05104646.1| NADH-quinone oxidoreductase, B subunit subfamily [Methylophaga
           thiooxidans DMS010]
 gi|224462945|gb|EEF79215.1| NADH-quinone oxidoreductase, B subunit subfamily [Methylophaga
           thiooxydans DMS010]
          Length = 162

 Score =  248 bits (632), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 117/151 (77%), Positives = 128/151 (84%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           +  KG + TS D+L+ WARTGSL  MTFGLACCAVEMM A   RYDL+RFG   R SPRQ
Sbjct: 6   VLEKGVVTTSADKLINWARTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGVVFRPSPRQ 65

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           SDVMIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPV
Sbjct: 66  SDVMIVAGTLVNKMAPALRKVYDQMSEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPV 125

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           DIYVPGCPPTAEAL+YGI+ LQKKI+R   +
Sbjct: 126 DIYVPGCPPTAEALLYGIVQLQKKIQRTNTI 156


>gi|198431614|ref|XP_002130919.1| PREDICTED: similar to NADH-ubiquinone oxidoreductase Fe-S protein 7
           [Ciona intestinalis]
          Length = 236

 Score =  247 bits (631), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 115/171 (67%), Positives = 139/171 (81%)

Query: 9   KIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVE 68
           K I  + +  L+ + ++ SR+ +  +   ++ T +D LV + RT SL  MTFGLACCAVE
Sbjct: 37  KKIETEPAQVLQPIRSEISRLKNADSRGEYIATRIDDLVNYVRTNSLWPMTFGLACCAVE 96

Query: 69  MMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGS 128
           MM  + PRYD++RFG   RASPRQSD+MIVAGTLTNKMA ALRRVYDQM +P++V+SMGS
Sbjct: 97  MMHFAAPRYDMDRFGVVFRASPRQSDLMIVAGTLTNKMAPALRRVYDQMADPKWVLSMGS 156

Query: 129 CANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           CANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG+L LQKK+RR
Sbjct: 157 CANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGVLQLQKKVRR 207


>gi|158455101|gb|AAI53838.1| NDUFS7 protein [Bos taurus]
          Length = 179

 Score =  247 bits (631), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 115/147 (78%), Positives = 128/147 (87%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           ++V  +D L+ WAR  SL  MTFGLACCAVEMM  + PRYD++RFG   RASPRQSDVMI
Sbjct: 28  YVVAKLDDLINWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQSDVMI 87

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGTLTNKMA ALR+VYDQMPEPRYV+SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP
Sbjct: 88  VAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 147

Query: 158 GCPPTAEALIYGILLLQKKIRRVGNVK 184
           GCPPTAEAL+YGIL LQKKI+R   ++
Sbjct: 148 GCPPTAEALLYGILQLQKKIKREKRLR 174


>gi|88608136|ref|YP_506317.1| NADH dehydrogenase I, B subunit [Neorickettsia sennetsu str.
           Miyayama]
 gi|123491986|sp|Q2GDX9|NUOB_NEOSM RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|88600305|gb|ABD45773.1| NADH dehydrogenase I, B subunit [Neorickettsia sennetsu str.
           Miyayama]
          Length = 167

 Score =  247 bits (631), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 116/152 (76%), Positives = 129/152 (84%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP 90
           S ++  G+LV  +D L+ WAR+GSL  MTFGLACCAVEMM  +  RYD++RFG   R SP
Sbjct: 12  SNVSSDGYLVAKLDDLINWARSGSLWPMTFGLACCAVEMMHFTASRYDMDRFGMIFRPSP 71

Query: 91  RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150
           RQSDVMIVAGTLTNKMA ALRRVYDQM EP+YVISMGSCANGGGYYHYSYSVVRGCDRIV
Sbjct: 72  RQSDVMIVAGTLTNKMAPALRRVYDQMAEPKYVISMGSCANGGGYYHYSYSVVRGCDRIV 131

Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
           PVD+YVPGCPPTAEAL+YG+L LQKKI R  N
Sbjct: 132 PVDVYVPGCPPTAEALLYGVLCLQKKINRQRN 163


>gi|52842986|ref|YP_096785.1| NADH dehydrogenase subunit B [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|54295617|ref|YP_128032.1| NADH dehydrogenase subunit B [Legionella pneumophila str. Lens]
 gi|54298771|ref|YP_125140.1| NADH dehydrogenase subunit B [Legionella pneumophila str. Paris]
 gi|296108431|ref|YP_003620132.1| NADH dehydrogenase I chain B [Legionella pneumophila 2300/99 Alcoy]
 gi|81376641|sp|Q5ZRT9|NUOB_LEGPH RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|81601171|sp|Q5WT21|NUOB_LEGPL RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|81601638|sp|Q5X1A8|NUOB_LEGPA RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|52630097|gb|AAU28838.1| NADH dehydrogenase I, B subunit [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|53752556|emb|CAH13988.1| NADH dehydrogenase I chain B [Legionella pneumophila str. Paris]
 gi|53755449|emb|CAH16945.1| NADH dehydrogenase I chain B [Legionella pneumophila str. Lens]
 gi|295650333|gb|ADG26180.1| NADH dehydrogenase I chain B [Legionella pneumophila 2300/99 Alcoy]
          Length = 158

 Score =  247 bits (631), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 116/149 (77%), Positives = 130/149 (87%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP 90
           +E+  KGF +T+V++LV WAR+GS+  MTFGLACCAVEMM     RYDL+RFG   R SP
Sbjct: 4   AELEKKGFELTTVEKLVGWARSGSMWPMTFGLACCAVEMMHVGAARYDLDRFGIIFRPSP 63

Query: 91  RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150
           RQSDVMIVAGTL NKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRIV
Sbjct: 64  RQSDVMIVAGTLCNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIV 123

Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           PVD+YVPGCPPTAEAL+YGI+ LQ KIRR
Sbjct: 124 PVDVYVPGCPPTAEALLYGIIQLQNKIRR 152


>gi|301776330|ref|XP_002923562.1| PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 7,
           mitochondrial-like [Ailuropoda melanoleuca]
          Length = 240

 Score =  247 bits (630), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 114/142 (80%), Positives = 126/142 (88%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           ++V  +D L+ WAR  SL  MTFGLACCAVEMM  + PRYD++RFG   RASPRQSDVMI
Sbjct: 89  YVVAKLDDLINWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQSDVMI 148

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGTLTNKMA ALR+VYDQMPEPRYV+SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP
Sbjct: 149 VAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 208

Query: 158 GCPPTAEALIYGILLLQKKIRR 179
           GCPPTAEAL+YGIL LQ+KI+R
Sbjct: 209 GCPPTAEALLYGILQLQRKIKR 230


>gi|91205212|ref|YP_537567.1| NADH dehydrogenase subunit B [Rickettsia bellii RML369-C]
 gi|122425872|sp|Q1RJI6|NUOB_RICBR RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|91068756|gb|ABE04478.1| NADH dehydrogenase I chain B [Rickettsia bellii RML369-C]
          Length = 174

 Score =  247 bits (630), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 112/156 (71%), Positives = 136/156 (87%)

Query: 29  ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88
           +++E++++G L+T VD ++ WAR+ SL  MTFGLACCAVEMMQA+  RYD++RFG   R 
Sbjct: 12  LNNELSNRGVLLTKVDDVIGWARSNSLWPMTFGLACCAVEMMQAAASRYDMDRFGMLFRP 71

Query: 89  SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 148
           SPRQSD+MIVAGTLTNKMA ALR+VYDQM EP++V+SMGSCANGGGYYH+SYSVVRGCDR
Sbjct: 72  SPRQSDLMIVAGTLTNKMAPALRKVYDQMAEPKWVLSMGSCANGGGYYHFSYSVVRGCDR 131

Query: 149 IVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           IVPVD+YVPGCPPTAEALIYG++ LQKKI+R    K
Sbjct: 132 IVPVDVYVPGCPPTAEALIYGLMQLQKKIKRTTGFK 167


>gi|119589914|gb|EAW69508.1| NADH dehydrogenase (ubiquinone) Fe-S protein 7, 20kDa
           (NADH-coenzyme Q reductase), isoform CRA_b [Homo
           sapiens]
          Length = 224

 Score =  247 bits (630), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 114/142 (80%), Positives = 126/142 (88%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           ++V  +D LV WAR  SL  MTFGLACCAVEMM  + PRYD++RFG   RASPRQSDVMI
Sbjct: 73  YVVAKLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQSDVMI 132

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGTLTNKMA ALR+VYDQMPEPRYV+SMGSCANGGGYYHYSYSVVRGCDRIVPVDIY+P
Sbjct: 133 VAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYIP 192

Query: 158 GCPPTAEALIYGILLLQKKIRR 179
           GCPPTAEAL+YGIL LQ+KI+R
Sbjct: 193 GCPPTAEALLYGILQLQRKIKR 214


>gi|319787442|ref|YP_004146917.1| NADH-quinone oxidoreductase subunit beta [Pseudoxanthomonas
           suwonensis 11-1]
 gi|317465954|gb|ADV27686.1| NADH-quinone oxidoreductase, B subunit [Pseudoxanthomonas
           suwonensis 11-1]
          Length = 192

 Score =  247 bits (630), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 120/161 (74%), Positives = 132/161 (81%), Gaps = 2/161 (1%)

Query: 25  DFSRISSE--ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82
           D  R + E  +  KG++ TSVD LV WARTGS+  MTFGLACCAVEMM A   R DL+R+
Sbjct: 22  DILRPAGENPLLEKGYVTTSVDALVNWARTGSMWPMTFGLACCAVEMMHAGAARLDLDRY 81

Query: 83  GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142
           G   R SPRQSDVMIVAGTL NKMA ALR+VYDQMP+P++VISMGSCANGGGYYHYSYSV
Sbjct: 82  GVVFRPSPRQSDVMIVAGTLVNKMAPALRKVYDQMPDPKWVISMGSCANGGGYYHYSYSV 141

Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           VRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQKKI R   V
Sbjct: 142 VRGCDRIVPVDIYVPGCPPTAEALVYGILQLQKKIWRTQTV 182


>gi|270158113|ref|ZP_06186770.1| NADH-quinone oxidoreductase B subunit [Legionella longbeachae
           D-4968]
 gi|289163622|ref|YP_003453760.1| NADH dehydrogenase I chain B [Legionella longbeachae NSW150]
 gi|269990138|gb|EEZ96392.1| NADH-quinone oxidoreductase B subunit [Legionella longbeachae
           D-4968]
 gi|288856795|emb|CBJ10606.1| NADH dehydrogenase I chain B [Legionella longbeachae NSW150]
          Length = 158

 Score =  247 bits (630), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 115/149 (77%), Positives = 129/149 (86%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP 90
           +E+   GF+ TSV++LV WAR+GS+  MTFGLACCAVEMM A   RYDL+RFG   R SP
Sbjct: 4   AELQKSGFVTTSVEKLVGWARSGSMWPMTFGLACCAVEMMHAGAARYDLDRFGIIFRPSP 63

Query: 91  RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150
           RQSDVMIVAGTL NKMA ALR+VYDQMPEPR+V+SMGSCANGGGYYHYSYSVVRGCDRIV
Sbjct: 64  RQSDVMIVAGTLCNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIV 123

Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           PVD+YVPGCPPTAEAL+YGI+ LQ KIR 
Sbjct: 124 PVDVYVPGCPPTAEALLYGIIQLQNKIRH 152


>gi|159031992|ref|NP_001103713.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 7,
           mitochondrial precursor [Pan troglodytes]
 gi|115502489|sp|Q0MQI0|NDUS7_PANTR RecName: Full=NADH dehydrogenase [ubiquinone] iron-sulfur protein
           7, mitochondrial; AltName: Full=Complex I-20kD;
           Short=CI-20kD; AltName: Full=NADH-ubiquinone
           oxidoreductase 20 kDa subunit; Flags: Precursor
 gi|111661826|gb|ABH12163.1| mitochondrial complex I subunit NDUFS7 [Pan troglodytes]
          Length = 213

 Score =  246 bits (629), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 114/142 (80%), Positives = 126/142 (88%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           ++V  +D LV WAR  SL  MTFGLACCAVEMM  + PRYD++RFG   RASPRQSDVMI
Sbjct: 62  YVVAKLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQSDVMI 121

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGTLTNKMA ALR+VYDQMPEPRYV+SMGSCANGGGYYHYSYSVVRGCDRIVPVDIY+P
Sbjct: 122 VAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYIP 181

Query: 158 GCPPTAEALIYGILLLQKKIRR 179
           GCPPTAEAL+YGIL LQ+KI+R
Sbjct: 182 GCPPTAEALLYGILQLQRKIKR 203


>gi|187929292|ref|YP_001899779.1| NADH dehydrogenase subunit B [Ralstonia pickettii 12J]
 gi|241663483|ref|YP_002981843.1| NADH dehydrogenase subunit B [Ralstonia pickettii 12D]
 gi|309781853|ref|ZP_07676586.1| NADH dehydrogenase (ubiquinone), B subunit [Ralstonia sp.
           5_7_47FAA]
 gi|218528007|sp|B2U7R0|NUOB_RALPJ RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|187726182|gb|ACD27347.1| NADH-quinone oxidoreductase, B subunit [Ralstonia pickettii 12J]
 gi|240865510|gb|ACS63171.1| NADH-quinone oxidoreductase, B subunit [Ralstonia pickettii 12D]
 gi|308919494|gb|EFP65158.1| NADH dehydrogenase (ubiquinone), B subunit [Ralstonia sp.
           5_7_47FAA]
          Length = 160

 Score =  246 bits (629), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 115/151 (76%), Positives = 128/151 (84%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           + ++GF+ T+ D+L+ W RTGSL  MTFGLACCAVEMM A   RYDL+RFG   R SPRQ
Sbjct: 6   VLNEGFVTTTADKLINWTRTGSLWPMTFGLACCAVEMMHAGASRYDLDRFGVVFRPSPRQ 65

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           SDVMIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPV
Sbjct: 66  SDVMIVAGTLCNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPV 125

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           D+YVPGCPPTAEALIYGI+ LQ KIRR   +
Sbjct: 126 DVYVPGCPPTAEALIYGIIQLQAKIRRTNTI 156


>gi|82702221|ref|YP_411787.1| NADH dehydrogenase subunit B [Nitrosospira multiformis ATCC 25196]
 gi|123544732|sp|Q2YA26|NUOB2_NITMU RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName:
           Full=NADH dehydrogenase I subunit B 2; AltName:
           Full=NDH-1 subunit B 2
 gi|82410286|gb|ABB74395.1| NADH dehydrogenase subunit B [Nitrosospira multiformis ATCC 25196]
          Length = 158

 Score =  246 bits (629), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 115/154 (74%), Positives = 129/154 (83%)

Query: 30  SSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS 89
           ++ +  KGF+ TS+D ++ W RTGS+  MTFGLACCAVEMMQA   RYDL+RFG   R S
Sbjct: 3   TNGVMEKGFVTTSLDSVINWGRTGSMWPMTFGLACCAVEMMQAGASRYDLDRFGIVFRPS 62

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQSDVMIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRI
Sbjct: 63  PRQSDVMIVAGTLCNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRI 122

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           VPVDIYVPGCPPTAEAL+YGI+ LQ KI R   +
Sbjct: 123 VPVDIYVPGCPPTAEALLYGIIQLQNKIHRTNTI 156


>gi|256821516|ref|YP_003145479.1| NADH-quinone oxidoreductase subunit B [Kangiella koreensis DSM
           16069]
 gi|256795055|gb|ACV25711.1| NADH-quinone oxidoreductase, B subunit [Kangiella koreensis DSM
           16069]
          Length = 186

 Score =  246 bits (629), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 114/151 (75%), Positives = 128/151 (84%)

Query: 29  ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88
           +  ++   GF+ TS+  L  WARTGS+  +TFGLACCA+EMM A   RYD++RFG   R 
Sbjct: 3   LEQQLQGDGFVTTSIKDLFDWARTGSMWPVTFGLACCAIEMMHAGAARYDMDRFGVIFRP 62

Query: 89  SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 148
           SPRQSDVMIVAGTLTNKMA ALRRVYDQMPEP++VISMGSCANGGGYYHYSYSVVRGCDR
Sbjct: 63  SPRQSDVMIVAGTLTNKMAPALRRVYDQMPEPKWVISMGSCANGGGYYHYSYSVVRGCDR 122

Query: 149 IVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           IVPVDIYVPGCPPTAEAL+YGI+ LQ KIRR
Sbjct: 123 IVPVDIYVPGCPPTAEALLYGIIQLQNKIRR 153


>gi|13543603|gb|AAH05954.1| NADH dehydrogenase (ubiquinone) Fe-S protein 7, 20kDa
           (NADH-coenzyme Q reductase) [Homo sapiens]
 gi|84105526|gb|AAI11518.1| NDUFS7 protein [Homo sapiens]
 gi|325464357|gb|ADZ15949.1| NADH dehydrogenase (ubiquinone) Fe-S protein 7, 20kDa
           (NADH-coenzyme Q reductase) [synthetic construct]
          Length = 213

 Score =  246 bits (629), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 114/142 (80%), Positives = 126/142 (88%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           ++V  +D LV WAR  SL  MTFGLACCAVEMM  + PRYD++RFG   RASPRQSDVMI
Sbjct: 62  YVVAKLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQSDVMI 121

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGTLTNKMA ALR+VYDQMPEPRYV+SMGSCANGGGYYHYSYSVVRGCDRIVPVDIY+P
Sbjct: 122 VAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYIP 181

Query: 158 GCPPTAEALIYGILLLQKKIRR 179
           GCPPTAEAL+YGIL LQ+KI+R
Sbjct: 182 GCPPTAEALLYGILQLQRKIKR 203


>gi|115502488|sp|Q0MQH9|NDUS7_GORGO RecName: Full=NADH dehydrogenase [ubiquinone] iron-sulfur protein
           7, mitochondrial; AltName: Full=Complex I-20kD;
           Short=CI-20kD; AltName: Full=NADH-ubiquinone
           oxidoreductase 20 kDa subunit; Flags: Precursor
 gi|269969394|sp|P0CB84|NDUS7_PONPY RecName: Full=NADH dehydrogenase [ubiquinone] iron-sulfur protein
           7, mitochondrial; AltName: Full=Complex I-20kD;
           Short=CI-20kD; AltName: Full=NADH-ubiquinone
           oxidoreductase 20 kDa subunit; Flags: Precursor
 gi|111661828|gb|ABH12164.1| mitochondrial complex I subunit NDUFS7 [Gorilla gorilla]
 gi|111661830|gb|ABH12165.1| mitochondrial complex I subunit NDUFS7 [Pongo pygmaeus]
          Length = 213

 Score =  246 bits (628), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 114/142 (80%), Positives = 126/142 (88%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           ++V  +D LV WAR  SL  MTFGLACCAVEMM  + PRYD++RFG   RASPRQSDVMI
Sbjct: 62  YVVAKLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQSDVMI 121

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGTLTNKMA ALR+VYDQMPEPRYV+SMGSCANGGGYYHYSYSVVRGCDRIVPVDIY+P
Sbjct: 122 VAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYIP 181

Query: 158 GCPPTAEALIYGILLLQKKIRR 179
           GCPPTAEAL+YGIL LQ+KI+R
Sbjct: 182 GCPPTAEALLYGILQLQRKIKR 203


>gi|187281616|ref|NP_077718.3| NADH dehydrogenase [ubiquinone] iron-sulfur protein 7,
           mitochondrial precursor [Homo sapiens]
 gi|90110040|sp|O75251|NDUS7_HUMAN RecName: Full=NADH dehydrogenase [ubiquinone] iron-sulfur protein
           7, mitochondrial; AltName: Full=Complex I-20kD;
           Short=CI-20kD; AltName: Full=NADH-ubiquinone
           oxidoreductase 20 kDa subunit; AltName: Full=PSST
           subunit; Flags: Precursor
 gi|33150724|gb|AAP97240.1|AF115969_1 NADH:ubiquinone oxidoreductase PSST subunit [Homo sapiens]
 gi|62897035|dbj|BAD96458.1| NADH-ubiquinone oxidoreductase Fe-S protein 7 variant [Homo
           sapiens]
          Length = 213

 Score =  246 bits (628), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 114/142 (80%), Positives = 126/142 (88%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           ++V  +D LV WAR  SL  MTFGLACCAVEMM  + PRYD++RFG   RASPRQSDVMI
Sbjct: 62  YVVAKLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQSDVMI 121

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGTLTNKMA ALR+VYDQMPEPRYV+SMGSCANGGGYYHYSYSVVRGCDRIVPVDIY+P
Sbjct: 122 VAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYIP 181

Query: 158 GCPPTAEALIYGILLLQKKIRR 179
           GCPPTAEAL+YGIL LQ+KI+R
Sbjct: 182 GCPPTAEALLYGILQLQRKIKR 203


>gi|17546780|ref|NP_520182.1| NADH dehydrogenase subunit B [Ralstonia solanacearum GMI1000]
 gi|83746298|ref|ZP_00943351.1| NADH-quinone oxidoreductase chain B [Ralstonia solanacearum UW551]
 gi|207723874|ref|YP_002254272.1| nadh dehydrogenaseI(chain b) protein [Ralstonia solanacearum MolK2]
 gi|207742736|ref|YP_002259128.1| nadh dehydrogenaseI(chain b) protein [Ralstonia solanacearum
           IPO1609]
 gi|81504305|sp|Q8XXQ2|NUOB_RALSO RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|17429080|emb|CAD15768.1| probable nadh dehydrogenaseI(chain b) oxidoreductase protein
           [Ralstonia solanacearum GMI1000]
 gi|83727048|gb|EAP74173.1| NADH-quinone oxidoreductase chain B [Ralstonia solanacearum UW551]
 gi|206589079|emb|CAQ36041.1| nadh dehydrogenaseI(chain b) protein [Ralstonia solanacearum MolK2]
 gi|206594130|emb|CAQ61057.1| nadh dehydrogenaseI(chain b) protein [Ralstonia solanacearum
           IPO1609]
 gi|299066334|emb|CBJ37518.1| NADH-quinone oxidoreductase subunit B [Ralstonia solanacearum
           CMR15]
          Length = 160

 Score =  246 bits (628), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 115/151 (76%), Positives = 128/151 (84%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           + ++GF+ T+ D+L+ W RTGSL  MTFGLACCAVEMM A   RYDL+RFG   R SPRQ
Sbjct: 6   VLNEGFVTTTADKLINWTRTGSLWPMTFGLACCAVEMMHAGASRYDLDRFGVVFRPSPRQ 65

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           SDVMIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPV
Sbjct: 66  SDVMIVAGTLCNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPV 125

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           D+YVPGCPPTAEALIYGI+ LQ KIRR   +
Sbjct: 126 DVYVPGCPPTAEALIYGIIQLQAKIRRTNTI 156


>gi|119589913|gb|EAW69507.1| NADH dehydrogenase (ubiquinone) Fe-S protein 7, 20kDa
           (NADH-coenzyme Q reductase), isoform CRA_a [Homo
           sapiens]
          Length = 298

 Score =  246 bits (628), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 114/142 (80%), Positives = 126/142 (88%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           ++V  +D LV WAR  SL  MTFGLACCAVEMM  + PRYD++RFG   RASPRQSDVMI
Sbjct: 147 YVVAKLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQSDVMI 206

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGTLTNKMA ALR+VYDQMPEPRYV+SMGSCANGGGYYHYSYSVVRGCDRIVPVDIY+P
Sbjct: 207 VAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYIP 266

Query: 158 GCPPTAEALIYGILLLQKKIRR 179
           GCPPTAEAL+YGIL LQ+KI+R
Sbjct: 267 GCPPTAEALLYGILQLQRKIKR 288


>gi|11466535|ref|NP_044784.1| NADH dehydrogenase subunit 10 [Reclinomonas americana]
 gi|6647649|sp|O21272|NDUS7_RECAM RecName: Full=NADH-ubiquinone oxidoreductase 20 kDa subunit;
           AltName: Full=NADH dehydrogenase subunit 10
 gi|2258365|gb|AAD11899.1| NADH dehydrogenase subunit 10 [Reclinomonas americana]
          Length = 182

 Score =  246 bits (628), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 115/154 (74%), Positives = 132/154 (85%)

Query: 26  FSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA 85
           F  ++++     F+V+ +D+LV WAR GSL  MTFGLACCAVEMM ++  RYDL+RFG  
Sbjct: 19  FMILNNKQNKTEFIVSKMDELVNWARKGSLWPMTFGLACCAVEMMHSAASRYDLDRFGII 78

Query: 86  PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRG 145
            R SPRQSDVMIVAGTLTNKMA ALR+VYDQM EPR+V+SMGSCANGGGYYHYSYSVVRG
Sbjct: 79  FRPSPRQSDVMIVAGTLTNKMAPALRKVYDQMSEPRWVVSMGSCANGGGYYHYSYSVVRG 138

Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           CDRIVPVDIYVPGCPPTAEAL+YG+L LQKKI+R
Sbjct: 139 CDRIVPVDIYVPGCPPTAEALLYGLLQLQKKIKR 172


>gi|197097452|ref|NP_001126953.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 7,
           mitochondrial precursor [Pongo abelii]
 gi|269969393|sp|P0CB83|NDUS7_PONAB RecName: Full=NADH dehydrogenase [ubiquinone] iron-sulfur protein
           7, mitochondrial; AltName: Full=Complex I-20kD;
           Short=CI-20kD; AltName: Full=NADH-ubiquinone
           oxidoreductase 20 kDa subunit; Flags: Precursor
 gi|55733271|emb|CAH93318.1| hypothetical protein [Pongo abelii]
          Length = 213

 Score =  246 bits (628), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 113/142 (79%), Positives = 126/142 (88%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           ++V  +D L+ WAR  SL  MTFGLACCAVEMM  + PRYD++RFG   RASPRQSDVMI
Sbjct: 62  YVVAKLDDLINWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQSDVMI 121

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGTLTNKMA ALR+VYDQMPEPRYV+SMGSCANGGGYYHYSYSVVRGCDRIVPVDIY+P
Sbjct: 122 VAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYIP 181

Query: 158 GCPPTAEALIYGILLLQKKIRR 179
           GCPPTAEAL+YGIL LQ+KI+R
Sbjct: 182 GCPPTAEALLYGILQLQRKIKR 203


>gi|34189943|gb|AAH01715.2| NDUFS7 protein [Homo sapiens]
          Length = 208

 Score =  246 bits (628), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 114/142 (80%), Positives = 126/142 (88%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           ++V  +D LV WAR  SL  MTFGLACCAVEMM  + PRYD++RFG   RASPRQSDVMI
Sbjct: 57  YVVAKLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQSDVMI 116

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGTLTNKMA ALR+VYDQMPEPRYV+SMGSCANGGGYYHYSYSVVRGCDRIVPVDIY+P
Sbjct: 117 VAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYIP 176

Query: 158 GCPPTAEALIYGILLLQKKIRR 179
           GCPPTAEAL+YGIL LQ+KI+R
Sbjct: 177 GCPPTAEALLYGILQLQRKIKR 198


>gi|254796791|ref|YP_003081628.1| NADH-quinone oxidoreductase chain b [Neorickettsia risticii str.
           Illinois]
 gi|254590025|gb|ACT69387.1| NADH-quinone oxidoreductase chain b [Neorickettsia risticii str.
           Illinois]
          Length = 167

 Score =  246 bits (628), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 119/159 (74%), Positives = 131/159 (82%), Gaps = 2/159 (1%)

Query: 26  FSRIS--SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFG 83
           FS I+  S +   G+LV  +D L+ WAR GSL  MTFGLACCAVEMM  +  RYD++RFG
Sbjct: 5   FSDINALSNVGSDGYLVAKLDDLINWARAGSLWPMTFGLACCAVEMMHFTASRYDMDRFG 64

Query: 84  FAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVV 143
              R SPRQSDVMIVAGTLTNKMA ALRRVYDQM EP+YVISMGSCANGGGYYHYSYSVV
Sbjct: 65  MIFRPSPRQSDVMIVAGTLTNKMAPALRRVYDQMAEPKYVISMGSCANGGGYYHYSYSVV 124

Query: 144 RGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
           RGCDRIVPVD+YVPGCPPTAEAL+YG+L LQKKI R  N
Sbjct: 125 RGCDRIVPVDVYVPGCPPTAEALLYGVLCLQKKINRQRN 163


>gi|300691026|ref|YP_003752021.1| NADH-quinone oxidoreductase subunit B [Ralstonia solanacearum
           PSI07]
 gi|299078086|emb|CBJ50729.1| NADH-quinone oxidoreductase subunit B [Ralstonia solanacearum
           PSI07]
          Length = 160

 Score =  246 bits (628), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 115/151 (76%), Positives = 128/151 (84%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           + ++GF+ T+ D+L+ W RTGSL  MTFGLACCAVEMM A   RYDL+RFG   R SPRQ
Sbjct: 6   VLNEGFVTTTADKLINWTRTGSLWPMTFGLACCAVEMMHAGASRYDLDRFGVVFRPSPRQ 65

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           SDVMIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPV
Sbjct: 66  SDVMIVAGTLCNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPV 125

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           D+YVPGCPPTAEALIYGI+ LQ KIRR   +
Sbjct: 126 DVYVPGCPPTAEALIYGIIQLQAKIRRTNTI 156


>gi|292493667|ref|YP_003529106.1| NADH-quinone oxidoreductase subunit beta [Nitrosococcus halophilus
           Nc4]
 gi|291582262|gb|ADE16719.1| NADH-quinone oxidoreductase, B subunit [Nitrosococcus halophilus
           Nc4]
          Length = 158

 Score =  246 bits (628), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 116/147 (78%), Positives = 127/147 (86%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           +  +G + T+ D+L+ WARTGSL  MTFGLACCAVEMM A   RYDL+RFG   R SPRQ
Sbjct: 6   VLERGVVTTTADKLINWARTGSLWPMTFGLACCAVEMMHAGASRYDLDRFGVVFRPSPRQ 65

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           SDVMIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPV
Sbjct: 66  SDVMIVAGTLVNKMAPALRKVYDQMSEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPV 125

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179
           DIYVPGCPPTAEAL+YGI+ LQKKIRR
Sbjct: 126 DIYVPGCPPTAEALLYGIIQLQKKIRR 152


>gi|254247658|ref|ZP_04940979.1| NADH dehydrogenase beta subunit [Burkholderia cenocepacia PC184]
 gi|124872434|gb|EAY64150.1| NADH dehydrogenase beta subunit [Burkholderia cenocepacia PC184]
          Length = 173

 Score =  246 bits (628), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 114/151 (75%), Positives = 127/151 (84%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           +  +GF+ T+ D+L+ W RTGSL  MTFGLACCAVEMM A   RYDL+RFG   R SPRQ
Sbjct: 20  VLKEGFVTTTADKLINWTRTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGVVFRPSPRQ 79

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           SDVMIVAGTL NKMA ALRRVYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPV
Sbjct: 80  SDVMIVAGTLCNKMAPALRRVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPV 139

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           D+YVPGCPPTAEAL+YG++ LQ KIRR   +
Sbjct: 140 DVYVPGCPPTAEALVYGVIQLQAKIRRTNTI 170


>gi|110225660|ref|YP_665666.1| NADH dehydrogenase subunit 10 [Nephroselmis olivacea]
 gi|6066175|gb|AAF03193.1|AF110138_25 NADH dehydrogenase subunit 10 [Nephroselmis olivacea]
          Length = 158

 Score =  246 bits (628), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 115/145 (79%), Positives = 126/145 (86%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           FL+T +D L+ WAR GS+  MTFGLACCAVEMM     RYDL+RFG   R SPRQSDVMI
Sbjct: 7   FLLTGIDSLLNWARKGSMWPMTFGLACCAVEMMHCGASRYDLDRFGIIFRPSPRQSDVMI 66

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGTLTNKMA ALR+VYDQMPEPR+V+SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP
Sbjct: 67  VAGTLTNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 126

Query: 158 GCPPTAEALIYGILLLQKKIRRVGN 182
           GCPPTAEAL+YG+L LQKKI+R  N
Sbjct: 127 GCPPTAEALLYGLLQLQKKIQRTNN 151


>gi|148244390|ref|YP_001219084.1| NADH dehydrogenase I chain B [Candidatus Vesicomyosocius okutanii
           HA]
 gi|218528012|sp|A5CXF8|NUOB_VESOH RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|146326217|dbj|BAF61360.1| NADH dehydrogenase I chain B [Candidatus Vesicomyosocius okutanii
           HA]
          Length = 159

 Score =  246 bits (628), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 112/151 (74%), Positives = 131/151 (86%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           +  +GF+  S+D+++ WARTGSL  MTFGLACCAVEMM+A   RYDL+RFG   R +PRQ
Sbjct: 6   LIKQGFVTMSLDRVINWARTGSLWPMTFGLACCAVEMMEAGSSRYDLDRFGIVFRPTPRQ 65

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           SD+MIVAGTLTNKMA ALR+VYDQMPEP++VISMGSCANGGGYYHYSY+V+RGCDRIVPV
Sbjct: 66  SDLMIVAGTLTNKMAPALRKVYDQMPEPKWVISMGSCANGGGYYHYSYAVIRGCDRIVPV 125

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           DIYVPGCPPTAEAL+YGI+ LQ KIRR   +
Sbjct: 126 DIYVPGCPPTAEALLYGIMQLQDKIRRTNTI 156


>gi|74317161|ref|YP_314901.1| NADH dehydrogenase subunit B [Thiobacillus denitrificans ATCC
           25259]
 gi|123611053|sp|Q3SEX7|NUOB_THIDA RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|74056656|gb|AAZ97096.1| NADH dehydrogenase I chain B [Thiobacillus denitrificans ATCC
           25259]
          Length = 158

 Score =  246 bits (628), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 116/151 (76%), Positives = 128/151 (84%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           +  +GF+ T  DQL+ + RTGS+  MTFGLACCAVEMMQA   RYDL+RFG   R SPRQ
Sbjct: 6   VLEQGFVTTKADQLINYMRTGSMWPMTFGLACCAVEMMQAGASRYDLDRFGIVFRPSPRQ 65

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           SDVMIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPV
Sbjct: 66  SDVMIVAGTLCNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPV 125

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           DIYVPGCPPTAEALI+GI+ LQKKIRR   +
Sbjct: 126 DIYVPGCPPTAEALIFGIIQLQKKIRRTNTI 156


>gi|312796901|ref|YP_004029823.1| NADH-quinone oxidoreductase chain B [Burkholderia rhizoxinica HKI
           454]
 gi|312168676|emb|CBW75679.1| NADH-quinone oxidoreductase chain B (EC 1.6.5.3) [Burkholderia
           rhizoxinica HKI 454]
          Length = 173

 Score =  246 bits (627), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 113/151 (74%), Positives = 127/151 (84%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           +  +GF+ T+ D+L+ W RTGSL  MTFGLACCAVEMM A   RYDL+RFG   R SPRQ
Sbjct: 20  VLKEGFVTTTADKLINWTRTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGVVFRPSPRQ 79

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           SDVMIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPV
Sbjct: 80  SDVMIVAGTLCNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPV 139

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           D+YVPGCPPTAEAL+YG++ LQ KIRR   +
Sbjct: 140 DVYVPGCPPTAEALVYGVIQLQAKIRRTNTI 170


>gi|206560702|ref|YP_002231467.1| NADH dehydrogenase subunit B [Burkholderia cenocepacia J2315]
 gi|198036744|emb|CAR52644.1| NADH dehydrogenase I chain B [Burkholderia cenocepacia J2315]
          Length = 173

 Score =  246 bits (627), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 114/151 (75%), Positives = 127/151 (84%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           +  +GF+ T+ D+L+ W RTGSL  MTFGLACCAVEMM A   RYDL+RFG   R SPRQ
Sbjct: 20  VLKEGFVTTTADKLINWTRTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGVVFRPSPRQ 79

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           SDVMIVAGTL NKMA ALRRVYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPV
Sbjct: 80  SDVMIVAGTLCNKMAPALRRVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPV 139

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           D+YVPGCPPTAEAL+YG++ LQ KIRR   +
Sbjct: 140 DVYVPGCPPTAEALVYGVIQLQAKIRRTNTI 170


>gi|254251862|ref|ZP_04945180.1| NADH dehydrogenase beta subunit [Burkholderia dolosa AUO158]
 gi|124894471|gb|EAY68351.1| NADH dehydrogenase beta subunit [Burkholderia dolosa AUO158]
          Length = 173

 Score =  246 bits (627), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 114/151 (75%), Positives = 127/151 (84%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           +  +GF+ T+ D+L+ W RTGSL  MTFGLACCAVEMM A   RYDL+RFG   R SPRQ
Sbjct: 20  VLKEGFVTTTADKLINWTRTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGVVFRPSPRQ 79

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           SDVMIVAGTL NKMA ALRRVYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPV
Sbjct: 80  SDVMIVAGTLCNKMAPALRRVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPV 139

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           D+YVPGCPPTAEAL+YG++ LQ KIRR   +
Sbjct: 140 DVYVPGCPPTAEALVYGVIQLQAKIRRTNTI 170


>gi|157825617|ref|YP_001493337.1| NADH dehydrogenase subunit B [Rickettsia akari str. Hartford]
 gi|218528016|sp|A8GN54|NUOB_RICAH RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|157799575|gb|ABV74829.1| NADH dehydrogenase subunit B [Rickettsia akari str. Hartford]
          Length = 174

 Score =  246 bits (627), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 112/156 (71%), Positives = 135/156 (86%)

Query: 29  ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88
           +++EI+++GFL+T +D ++ WAR  SL  MTFGLACCAVEMMQA+  RYD++RFG   R 
Sbjct: 12  LNNEISNRGFLLTKIDDIIGWARAHSLWPMTFGLACCAVEMMQAASSRYDMDRFGMLFRP 71

Query: 89  SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 148
           SPRQSD+MIVAGTLTNKMA ALR+VYDQM  P++V+SMGSCANGGGYYH+SYSVVRGCDR
Sbjct: 72  SPRQSDLMIVAGTLTNKMAPALRKVYDQMAVPKWVLSMGSCANGGGYYHFSYSVVRGCDR 131

Query: 149 IVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           IVPVD+YVPGCPPTAEALIYG++ LQKKI+R    K
Sbjct: 132 IVPVDVYVPGCPPTAEALIYGLMQLQKKIKRTTGFK 167


>gi|30249736|ref|NP_841806.1| NADH dehydrogenase subunit B [Nitrosomonas europaea ATCC 19718]
 gi|75540322|sp|Q82TU4|NUOB_NITEU RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|30180773|emb|CAD85687.1| Respiratory-chain NADH dehydrogenase 20 Kd subunit [Nitrosomonas
           europaea ATCC 19718]
          Length = 158

 Score =  246 bits (627), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 115/151 (76%), Positives = 127/151 (84%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           +  KGF+ TS+D L+ W RTGS+  MTFGLACCAVEMMQ    RYDL+RFG   R SPRQ
Sbjct: 6   VLDKGFVTTSLDSLINWGRTGSMWPMTFGLACCAVEMMQTGASRYDLDRFGIVFRPSPRQ 65

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           SDVMIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPV
Sbjct: 66  SDVMIVAGTLCNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPV 125

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           DIYVPGCPPTAEAL+YGI+ LQ KI+R   +
Sbjct: 126 DIYVPGCPPTAEALLYGIIQLQNKIKRTNTI 156


>gi|300703643|ref|YP_003745245.1| NADH-quinone oxidoreductase subunit B [Ralstonia solanacearum
           CFBP2957]
 gi|299071306|emb|CBJ42624.1| NADH-quinone oxidoreductase subunit B [Ralstonia solanacearum
           CFBP2957]
          Length = 160

 Score =  246 bits (627), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 114/151 (75%), Positives = 128/151 (84%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           + ++GF+ T+ D+L+ W RTGSL  MTFGLACCAVEMM A   RYDL+RFG   R SPRQ
Sbjct: 6   VLNEGFVTTTADKLINWTRTGSLWPMTFGLACCAVEMMHAGASRYDLDRFGVVFRPSPRQ 65

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           SDVMIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPV
Sbjct: 66  SDVMIVAGTLCNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPV 125

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           D+YVPGCPPTAEALIYG++ LQ KIRR   +
Sbjct: 126 DVYVPGCPPTAEALIYGVIQLQAKIRRTNTI 156


>gi|121598483|ref|YP_992470.1| NADH dehydrogenase subunit B [Burkholderia mallei SAVP1]
 gi|124385700|ref|YP_001026727.1| NADH dehydrogenase subunit B [Burkholderia mallei NCTC 10229]
 gi|126439724|ref|YP_001058339.1| NADH dehydrogenase subunit B [Burkholderia pseudomallei 668]
 gi|126450627|ref|YP_001079988.1| NADH dehydrogenase subunit B [Burkholderia mallei NCTC 10247]
 gi|126451839|ref|YP_001065578.1| NADH dehydrogenase subunit B [Burkholderia pseudomallei 1106a]
 gi|167562178|ref|ZP_02355094.1| NADH dehydrogenase subunit B [Burkholderia oklahomensis EO147]
 gi|167569423|ref|ZP_02362297.1| NADH dehydrogenase subunit B [Burkholderia oklahomensis C6786]
 gi|167580423|ref|ZP_02373297.1| NADH dehydrogenase subunit B [Burkholderia thailandensis TXDOH]
 gi|167618532|ref|ZP_02387163.1| NADH dehydrogenase subunit B [Burkholderia thailandensis Bt4]
 gi|167718844|ref|ZP_02402080.1| NADH dehydrogenase subunit B [Burkholderia pseudomallei DM98]
 gi|167737853|ref|ZP_02410627.1| NADH dehydrogenase subunit B [Burkholderia pseudomallei 14]
 gi|167815037|ref|ZP_02446717.1| NADH dehydrogenase subunit B [Burkholderia pseudomallei 91]
 gi|167823453|ref|ZP_02454924.1| NADH dehydrogenase subunit B [Burkholderia pseudomallei 9]
 gi|167836050|ref|ZP_02462933.1| NADH dehydrogenase subunit B [Burkholderia thailandensis MSMB43]
 gi|167845005|ref|ZP_02470513.1| NADH dehydrogenase subunit B [Burkholderia pseudomallei B7210]
 gi|167893546|ref|ZP_02480948.1| NADH dehydrogenase subunit B [Burkholderia pseudomallei 7894]
 gi|167901992|ref|ZP_02489197.1| NADH dehydrogenase subunit B [Burkholderia pseudomallei NCTC 13177]
 gi|167910228|ref|ZP_02497319.1| NADH dehydrogenase subunit B [Burkholderia pseudomallei 112]
 gi|167918261|ref|ZP_02505352.1| NADH dehydrogenase subunit B [Burkholderia pseudomallei BCC215]
 gi|254175674|ref|ZP_04882334.1| NADH-quinone oxidoreductase, B subunit [Burkholderia mallei ATCC
           10399]
 gi|254181186|ref|ZP_04887783.1| NADH-quinone oxidoreductase, B subunit [Burkholderia pseudomallei
           1655]
 gi|254190549|ref|ZP_04897056.1| NADH-quinone oxidoreductase, B subunit [Burkholderia pseudomallei
           Pasteur 52237]
 gi|254195108|ref|ZP_04901537.1| NADH-quinone oxidoreductase, B subunit [Burkholderia pseudomallei
           S13]
 gi|254202109|ref|ZP_04908472.1| NADH-quinone oxidoreductase, B subunit [Burkholderia mallei FMH]
 gi|254258086|ref|ZP_04949140.1| NADH-quinone oxidoreductase, B subunit [Burkholderia pseudomallei
           1710a]
 gi|254298534|ref|ZP_04965986.1| NADH-quinone oxidoreductase, B subunit [Burkholderia pseudomallei
           406e]
 gi|254359861|ref|ZP_04976131.1| NADH-quinone oxidoreductase, B subunit [Burkholderia mallei
           2002721280]
 gi|257139689|ref|ZP_05587951.1| NADH dehydrogenase subunit B [Burkholderia thailandensis E264]
 gi|218527942|sp|A3MIA2|NUOB1_BURM7 RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName:
           Full=NADH dehydrogenase I subunit B 1; AltName:
           Full=NDH-1 subunit B 1
 gi|218527943|sp|A2S458|NUOB1_BURM9 RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName:
           Full=NADH dehydrogenase I subunit B 1; AltName:
           Full=NDH-1 subunit B 1
 gi|218527965|sp|A1V2L7|NUOB1_BURMS RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName:
           Full=NADH dehydrogenase I subunit B 1; AltName:
           Full=NDH-1 subunit B 1
 gi|218527966|sp|A3NTA7|NUOB1_BURP0 RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName:
           Full=NADH dehydrogenase I subunit B 1; AltName:
           Full=NDH-1 subunit B 1
 gi|218527967|sp|A3N7L8|NUOB1_BURP6 RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName:
           Full=NADH dehydrogenase I subunit B 1; AltName:
           Full=NDH-1 subunit B 1
 gi|218528060|sp|Q62IN6|NUOB1_BURMA RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName:
           Full=NADH dehydrogenase I subunit B 1; AltName:
           Full=NDH-1 subunit B 1
 gi|218528063|sp|Q2SZN4|NUOB_BURTA RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|218528080|sp|Q63VN2|NUOB1_BURPS RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName:
           Full=NADH dehydrogenase I subunit B 1; AltName:
           Full=NDH-1 subunit B 1
 gi|218528081|sp|Q3JUA8|NUOB1_BURP1 RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName:
           Full=NADH dehydrogenase I subunit B 1; AltName:
           Full=NDH-1 subunit B 1
 gi|121227293|gb|ABM49811.1| NADH-quinone oxidoreductase, B subunit [Burkholderia mallei SAVP1]
 gi|124293720|gb|ABN02989.1| NADH-quinone oxidoreductase, B subunit [Burkholderia mallei NCTC
           10229]
 gi|126219217|gb|ABN82723.1| NADH-quinone oxidoreductase, B subunit [Burkholderia pseudomallei
           668]
 gi|126225481|gb|ABN89021.1| NADH-quinone oxidoreductase, B subunit [Burkholderia pseudomallei
           1106a]
 gi|126243497|gb|ABO06590.1| NADH-quinone oxidoreductase, B subunit [Burkholderia mallei NCTC
           10247]
 gi|147746356|gb|EDK53433.1| NADH-quinone oxidoreductase, B subunit [Burkholderia mallei FMH]
 gi|148029101|gb|EDK87006.1| NADH-quinone oxidoreductase, B subunit [Burkholderia mallei
           2002721280]
 gi|157808426|gb|EDO85596.1| NADH-quinone oxidoreductase, B subunit [Burkholderia pseudomallei
           406e]
 gi|157938224|gb|EDO93894.1| NADH-quinone oxidoreductase, B subunit [Burkholderia pseudomallei
           Pasteur 52237]
 gi|160696718|gb|EDP86688.1| NADH-quinone oxidoreductase, B subunit [Burkholderia mallei ATCC
           10399]
 gi|169651856|gb|EDS84549.1| NADH-quinone oxidoreductase, B subunit [Burkholderia pseudomallei
           S13]
 gi|184211724|gb|EDU08767.1| NADH-quinone oxidoreductase, B subunit [Burkholderia pseudomallei
           1655]
 gi|254216775|gb|EET06159.1| NADH-quinone oxidoreductase, B subunit [Burkholderia pseudomallei
           1710a]
          Length = 159

 Score =  246 bits (627), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 114/151 (75%), Positives = 127/151 (84%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           +  +GF+ T+ D+L+ W RTGSL  MTFGLACCAVEMM A   RYDL+RFG   R SPRQ
Sbjct: 6   VLKEGFVTTTADKLINWTRTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGVVFRPSPRQ 65

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           SDVMIVAGTL NKMA ALRRVYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPV
Sbjct: 66  SDVMIVAGTLCNKMAPALRRVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPV 125

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           D+YVPGCPPTAEAL+YG++ LQ KIRR   +
Sbjct: 126 DVYVPGCPPTAEALVYGVIQLQAKIRRTSTI 156


>gi|73540665|ref|YP_295185.1| NADH dehydrogenase subunit B [Ralstonia eutropha JMP134]
 gi|123625484|sp|Q473U2|NUOB_RALEJ RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|72118078|gb|AAZ60341.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit [Ralstonia eutropha
           JMP134]
          Length = 160

 Score =  246 bits (627), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 114/151 (75%), Positives = 128/151 (84%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           + ++GF+ T+ D+L+ W RTGSL  MTFGLACCAVEMM A   RYDL+RFG   R SPRQ
Sbjct: 6   VLNEGFVTTTADKLINWTRTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGVVFRPSPRQ 65

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           SDVMIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPV
Sbjct: 66  SDVMIVAGTLCNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPV 125

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           DIYVPGCPPTAEALIYG++ LQ KI+R   +
Sbjct: 126 DIYVPGCPPTAEALIYGVIQLQNKIKRTNTI 156


>gi|189351038|ref|YP_001946666.1| NADH dehydrogenase subunit B [Burkholderia multivorans ATCC 17616]
 gi|189335060|dbj|BAG44130.1| NADH dehydrogenase I chain B [Burkholderia multivorans ATCC 17616]
          Length = 173

 Score =  245 bits (626), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 114/151 (75%), Positives = 127/151 (84%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           +  +GF+ T+ D+L+ W RTGSL  MTFGLACCAVEMM A   RYDL+RFG   R SPRQ
Sbjct: 20  VLKEGFVTTTADKLINWTRTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGVVFRPSPRQ 79

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           SDVMIVAGTL NKMA ALRRVYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPV
Sbjct: 80  SDVMIVAGTLCNKMAPALRRVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPV 139

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           D+YVPGCPPTAEAL+YG++ LQ KIRR   +
Sbjct: 140 DVYVPGCPPTAEALVYGVIQLQAKIRRTNTI 170


>gi|118602276|ref|YP_903491.1| NADH-quinone oxidoreductase, B subunit [Candidatus Ruthia magnifica
           str. Cm (Calyptogena magnifica)]
 gi|218528022|sp|A1AVR3|NUOB_RUTMC RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|118567215|gb|ABL02020.1| NADH dehydrogenase subunit B [Candidatus Ruthia magnifica str. Cm
           (Calyptogena magnifica)]
          Length = 159

 Score =  245 bits (626), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 113/151 (74%), Positives = 130/151 (86%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           +  +GF+ TS++ ++ WARTGSL  MTFGLACCAVEMM+A   RYDL+RFG   R +PRQ
Sbjct: 6   LMKQGFVTTSLNNVINWARTGSLWPMTFGLACCAVEMMEAGSSRYDLDRFGIVFRPTPRQ 65

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           SD+MIVAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSY+VVRGCDRIVPV
Sbjct: 66  SDLMIVAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYAVVRGCDRIVPV 125

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           DIYVPGCPPTAEAL+YGI+ LQ KIR    +
Sbjct: 126 DIYVPGCPPTAEALLYGIIQLQDKIRSTNTI 156


>gi|78067045|ref|YP_369814.1| NADH dehydrogenase subunit B [Burkholderia sp. 383]
 gi|107023187|ref|YP_621514.1| NADH dehydrogenase subunit B [Burkholderia cenocepacia AU 1054]
 gi|115352337|ref|YP_774176.1| NADH dehydrogenase subunit B [Burkholderia ambifaria AMMD]
 gi|116690269|ref|YP_835892.1| NADH dehydrogenase subunit B [Burkholderia cenocepacia HI2424]
 gi|134296432|ref|YP_001120167.1| NADH dehydrogenase subunit B [Burkholderia vietnamiensis G4]
 gi|161524205|ref|YP_001579217.1| NADH dehydrogenase subunit B [Burkholderia multivorans ATCC 17616]
 gi|167585972|ref|ZP_02378360.1| NADH-quinone oxidoreductase, B subunit [Burkholderia ubonensis Bu]
 gi|170698110|ref|ZP_02889190.1| NADH-quinone oxidoreductase, B subunit [Burkholderia ambifaria
           IOP40-10]
 gi|170733608|ref|YP_001765555.1| NADH dehydrogenase subunit B [Burkholderia cenocepacia MC0-3]
 gi|171316304|ref|ZP_02905525.1| NADH-quinone oxidoreductase, B subunit [Burkholderia ambifaria
           MEX-5]
 gi|172061208|ref|YP_001808860.1| NADH dehydrogenase subunit B [Burkholderia ambifaria MC40-6]
 gi|221211736|ref|ZP_03584715.1| NADH-quinone oxidoreductase subunit b (nadh dehydrogenase i subunit
           b) (ndh-1 subunit b) [Burkholderia multivorans CGD1]
 gi|122322642|sp|Q0BDD1|NUOB_BURCM RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|123244856|sp|Q1BV14|NUOB_BURCA RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|123568005|sp|Q39EE6|NUOB_BURS3 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|218527979|sp|B1YTQ6|NUOB_BURA4 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|218527980|sp|B1JVP0|NUOB_BURCC RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|218527981|sp|A0K922|NUOB_BURCH RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|218527982|sp|A4JGC9|NUOB_BURVG RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|218528023|sp|A9AFY8|NUOB_BURM1 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|218528071|sp|B4E5M1|NUOB_BURCJ RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|77967790|gb|ABB09170.1| NADH dehydrogenase subunit B [Burkholderia sp. 383]
 gi|105893376|gb|ABF76541.1| NADH dehydrogenase subunit B [Burkholderia cenocepacia AU 1054]
 gi|115282325|gb|ABI87842.1| NADH dehydrogenase subunit B [Burkholderia ambifaria AMMD]
 gi|116648358|gb|ABK08999.1| NADH dehydrogenase subunit B [Burkholderia cenocepacia HI2424]
 gi|134139589|gb|ABO55332.1| NADH dehydrogenase subunit B [Burkholderia vietnamiensis G4]
 gi|160341634|gb|ABX14720.1| NADH-quinone oxidoreductase, B subunit [Burkholderia multivorans
           ATCC 17616]
 gi|169816850|gb|ACA91433.1| NADH-quinone oxidoreductase, B subunit [Burkholderia cenocepacia
           MC0-3]
 gi|170136968|gb|EDT05216.1| NADH-quinone oxidoreductase, B subunit [Burkholderia ambifaria
           IOP40-10]
 gi|171098530|gb|EDT43331.1| NADH-quinone oxidoreductase, B subunit [Burkholderia ambifaria
           MEX-5]
 gi|171993725|gb|ACB64644.1| NADH-quinone oxidoreductase, B subunit [Burkholderia ambifaria
           MC40-6]
 gi|221169097|gb|EEE01565.1| NADH-quinone oxidoreductase subunit b (nadh dehydrogenase i subunit
           b) (ndh-1 subunit b) [Burkholderia multivorans CGD1]
 gi|325520398|gb|EGC99516.1| NADH dehydrogenase subunit B [Burkholderia sp. TJI49]
          Length = 159

 Score =  245 bits (626), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 114/151 (75%), Positives = 127/151 (84%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           +  +GF+ T+ D+L+ W RTGSL  MTFGLACCAVEMM A   RYDL+RFG   R SPRQ
Sbjct: 6   VLKEGFVTTTADKLINWTRTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGVVFRPSPRQ 65

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           SDVMIVAGTL NKMA ALRRVYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPV
Sbjct: 66  SDVMIVAGTLCNKMAPALRRVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPV 125

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           D+YVPGCPPTAEAL+YG++ LQ KIRR   +
Sbjct: 126 DVYVPGCPPTAEALVYGVIQLQAKIRRTNTI 156


>gi|53718848|ref|YP_107834.1| NADH dehydrogenase subunit B [Burkholderia pseudomallei K96243]
 gi|53725818|ref|YP_103433.1| NADH dehydrogenase subunit B [Burkholderia mallei ATCC 23344]
 gi|76808565|ref|YP_332845.1| NADH dehydrogenase subunit B [Burkholderia pseudomallei 1710b]
 gi|83720537|ref|YP_441615.1| NADH dehydrogenase subunit B [Burkholderia thailandensis E264]
 gi|134283897|ref|ZP_01770593.1| NADH-quinone oxidoreductase, B subunit [Burkholderia pseudomallei
           305]
 gi|251767151|ref|ZP_02266185.2| NADH-quinone oxidoreductase, B subunit [Burkholderia mallei PRL-20]
 gi|254207439|ref|ZP_04913789.1| NADH-quinone oxidoreductase, B subunit [Burkholderia mallei JHU]
 gi|52209262|emb|CAH35207.1| NADH dehydrogenase I chain B [Burkholderia pseudomallei K96243]
 gi|52429241|gb|AAU49834.1| NADH-quinone oxidoreductase, B subunit [Burkholderia mallei ATCC
           23344]
 gi|76578018|gb|ABA47493.1| NADH dehydrogenase I chain B [Burkholderia pseudomallei 1710b]
 gi|83654362|gb|ABC38425.1| NADH-quinone oxidoreductase, B subunit [Burkholderia thailandensis
           E264]
 gi|134244686|gb|EBA44784.1| NADH-quinone oxidoreductase, B subunit [Burkholderia pseudomallei
           305]
 gi|147751333|gb|EDK58400.1| NADH-quinone oxidoreductase, B subunit [Burkholderia mallei JHU]
 gi|243063701|gb|EES45887.1| NADH-quinone oxidoreductase, B subunit [Burkholderia mallei PRL-20]
          Length = 173

 Score =  245 bits (626), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 114/151 (75%), Positives = 127/151 (84%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           +  +GF+ T+ D+L+ W RTGSL  MTFGLACCAVEMM A   RYDL+RFG   R SPRQ
Sbjct: 20  VLKEGFVTTTADKLINWTRTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGVVFRPSPRQ 79

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           SDVMIVAGTL NKMA ALRRVYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPV
Sbjct: 80  SDVMIVAGTLCNKMAPALRRVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPV 139

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           D+YVPGCPPTAEAL+YG++ LQ KIRR   +
Sbjct: 140 DVYVPGCPPTAEALVYGVIQLQAKIRRTSTI 170


>gi|307168025|gb|EFN61349.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 7,
           mitochondrial [Camponotus floridanus]
          Length = 222

 Score =  245 bits (626), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 111/147 (75%), Positives = 129/147 (87%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           + +  VD L+ W R GS+  MTFGLACCAVEMM  + PRYD++RFG   RASPRQSDV+I
Sbjct: 71  YALARVDDLLNWGRKGSIWPMTFGLACCAVEMMHIAAPRYDMDRFGVVFRASPRQSDVII 130

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGTLTNKMA ALR++YDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRI+PVDIYVP
Sbjct: 131 VAGTLTNKMAPALRKIYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVP 190

Query: 158 GCPPTAEALIYGILLLQKKIRRVGNVK 184
           GCPPTAEAL+YGIL LQKKI+R+ +++
Sbjct: 191 GCPPTAEALLYGILQLQKKIKRMQSIQ 217


>gi|28198172|ref|NP_778486.1| NADH dehydrogenase subunit B [Xylella fastidiosa Temecula1]
 gi|28056242|gb|AAO28135.1| NADH-ubiquinone oxidoreductase NQO6 subunit [Xylella fastidiosa
           Temecula1]
          Length = 191

 Score =  245 bits (626), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 115/154 (74%), Positives = 129/154 (83%)

Query: 30  SSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS 89
            S +  KG++ TSVD L+ WARTGS+  MTFGLACCAVEMM A   R DL+R+G   R S
Sbjct: 36  ESPLLQKGYVTTSVDALLNWARTGSMWPMTFGLACCAVEMMHAGAARLDLDRYGIVFRPS 95

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQSDVMIVAGTL NKMA ALR+VYDQMP+P++VISMGSCANGGGYYHYSYSVVRGCDRI
Sbjct: 96  PRQSDVMIVAGTLVNKMAPALRKVYDQMPDPKWVISMGSCANGGGYYHYSYSVVRGCDRI 155

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           VPVD+YVPGCPPTAEAL+YGIL LQKKI R   +
Sbjct: 156 VPVDVYVPGCPPTAEALVYGILQLQKKIWRTKTI 189


>gi|168032288|ref|XP_001768651.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162680150|gb|EDQ66589.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 201

 Score =  245 bits (625), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 118/159 (74%), Positives = 131/159 (82%), Gaps = 5/159 (3%)

Query: 30  SSEITHKG-----FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF 84
           +S  T KG     F+++ VD L+ WARTGS+  MTFGLACCAVEMM     RYDL+RFG 
Sbjct: 37  TSSTTSKGGPGAEFVLSKVDALMNWARTGSIWPMTFGLACCAVEMMHTGAARYDLDRFGI 96

Query: 85  APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR 144
             R SPRQSD MIVAGTLTNKMA ALR+VYDQMPEPR+V+SMGSCANGGGYYHYSYSVVR
Sbjct: 97  IFRPSPRQSDCMIVAGTLTNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSVVR 156

Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           GCDRIVPVDIYVPGCPPTAEAL+YG+L LQKKI R  +V
Sbjct: 157 GCDRIVPVDIYVPGCPPTAEALLYGLLQLQKKINRRKDV 195


>gi|11466592|ref|NP_066482.1| NADH dehydrogenase subunit 10 [Rhodomonas salina]
 gi|10444179|gb|AAG17753.1|AF288090_29 NADH dehydrogenase subunit 10 [Rhodomonas salina]
          Length = 158

 Score =  245 bits (625), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 112/147 (76%), Positives = 128/147 (87%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           F+++ +D L+ WAR GSL  MTFGLACCAVEMM A   RYD +RFG   RASPRQSD+MI
Sbjct: 7   FVISKIDDLLNWARRGSLWPMTFGLACCAVEMMHAGASRYDFDRFGIIFRASPRQSDIMI 66

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYH+SYSVVRGCD+IVPVD++VP
Sbjct: 67  VAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHFSYSVVRGCDKIVPVDVFVP 126

Query: 158 GCPPTAEALIYGILLLQKKIRRVGNVK 184
           GCPPTAEAL+YGIL LQKKI+R   V+
Sbjct: 127 GCPPTAEALLYGILQLQKKIKRTKTVQ 153


>gi|66809217|ref|XP_638331.1| NADH-ubiquinone oxidoreductase 20 kDa subunit [Dictyostelium
           discoideum AX4]
 gi|74853922|sp|Q54NI6|NDUS7_DICDI RecName: Full=NADH dehydrogenase [ubiquinone] iron-sulfur protein
           7, mitochondrial; Flags: Precursor
 gi|60466783|gb|EAL64831.1| NADH-ubiquinone oxidoreductase 20 kDa subunit [Dictyostelium
           discoideum AX4]
          Length = 178

 Score =  245 bits (625), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 116/165 (70%), Positives = 133/165 (80%)

Query: 19  LEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78
           L K+ A   + +   T    +++ +D LV WARTGSL  MTFGLACCAVEMMQ    RYD
Sbjct: 8   LSKLLASSFKQAPPNTLPEVVISKIDGLVNWARTGSLWPMTFGLACCAVEMMQGYAARYD 67

Query: 79  LERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY 138
           ++RFG  PRASPRQSD +IVAGTLTNKMA ALR+VYDQMP PRYV+SMGSCANGGGYYHY
Sbjct: 68  MDRFGVIPRASPRQSDCIIVAGTLTNKMAPALRKVYDQMPNPRYVVSMGSCANGGGYYHY 127

Query: 139 SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           SYSVVRGCDRI+PVD+Y+PGCPPTAEA +YGIL LQKKI R  N+
Sbjct: 128 SYSVVRGCDRIIPVDVYIPGCPPTAEAFVYGILQLQKKIGREQNL 172


>gi|182680806|ref|YP_001828966.1| NADH dehydrogenase subunit B [Xylella fastidiosa M23]
 gi|238065246|sp|B2I785|NUOB_XYLF2 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|238065259|sp|Q87EQ4|NUOB_XYLFT RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|182630916|gb|ACB91692.1| NADH-quinone oxidoreductase, B subunit [Xylella fastidiosa M23]
 gi|307579274|gb|ADN63243.1| NADH dehydrogenase subunit B [Xylella fastidiosa subsp. fastidiosa
           GB514]
          Length = 184

 Score =  245 bits (625), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 115/154 (74%), Positives = 129/154 (83%)

Query: 30  SSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS 89
            S +  KG++ TSVD L+ WARTGS+  MTFGLACCAVEMM A   R DL+R+G   R S
Sbjct: 29  ESPLLQKGYVTTSVDALLNWARTGSMWPMTFGLACCAVEMMHAGAARLDLDRYGIVFRPS 88

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQSDVMIVAGTL NKMA ALR+VYDQMP+P++VISMGSCANGGGYYHYSYSVVRGCDRI
Sbjct: 89  PRQSDVMIVAGTLVNKMAPALRKVYDQMPDPKWVISMGSCANGGGYYHYSYSVVRGCDRI 148

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           VPVD+YVPGCPPTAEAL+YGIL LQKKI R   +
Sbjct: 149 VPVDVYVPGCPPTAEALVYGILQLQKKIWRTKTI 182


>gi|326433088|gb|EGD78658.1| NDUFS7 protein [Salpingoeca sp. ATCC 50818]
          Length = 214

 Score =  245 bits (625), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 111/142 (78%), Positives = 125/142 (88%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           + +  +D LV WAR  S+  MTFGLACCAVEMM  + PRYD++RFG   RASPRQSDVMI
Sbjct: 63  YALAKLDDLVNWARKSSMWPMTFGLACCAVEMMHVAAPRYDMDRFGIVFRASPRQSDVMI 122

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGTLTNKMA ALR+VYDQMPEPR+V+SMGSCANGGGYYHYSY+VVRGCDRIVPVDIYVP
Sbjct: 123 VAGTLTNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYAVVRGCDRIVPVDIYVP 182

Query: 158 GCPPTAEALIYGILLLQKKIRR 179
           GCPPTAEAL+YG+L LQKKI+R
Sbjct: 183 GCPPTAEALLYGLLQLQKKIKR 204


>gi|15836909|ref|NP_297597.1| NADH dehydrogenase subunit B [Xylella fastidiosa 9a5c]
 gi|9105129|gb|AAF83117.1|AE003884_2 NADH-ubiquinone oxidoreductase, NQO6 subunit [Xylella fastidiosa
           9a5c]
          Length = 191

 Score =  245 bits (625), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 115/150 (76%), Positives = 128/150 (85%)

Query: 30  SSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS 89
            S +  KG++ TSVD L+ WARTGS+  MTFGLACCAVEMM A   R DL+R+G   R S
Sbjct: 36  ESPLLQKGYVTTSVDALLNWARTGSMWPMTFGLACCAVEMMHAGAARLDLDRYGIVFRPS 95

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQSDVMIVAGTL NKMA ALR+VYDQMP+P++VISMGSCANGGGYYHYSYSVVRGCDRI
Sbjct: 96  PRQSDVMIVAGTLVNKMAPALRKVYDQMPDPKWVISMGSCANGGGYYHYSYSVVRGCDRI 155

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           VPVD+YVPGCPPTAEAL+YGIL LQKKI R
Sbjct: 156 VPVDVYVPGCPPTAEALVYGILQLQKKIWR 185


>gi|288942133|ref|YP_003444373.1| NADH-quinone oxidoreductase subunit B [Allochromatium vinosum DSM
           180]
 gi|288897505|gb|ADC63341.1| NADH-quinone oxidoreductase, B subunit [Allochromatium vinosum DSM
           180]
          Length = 158

 Score =  245 bits (625), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 114/151 (75%), Positives = 128/151 (84%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           +  +G + T+ D+L+ WARTGSL  MTFGLACCA+EMM A   RYDL+RFG   R SPRQ
Sbjct: 6   LLEEGVVTTTADKLINWARTGSLWPMTFGLACCAIEMMHAGAARYDLDRFGIIFRPSPRQ 65

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           SDVMIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPV
Sbjct: 66  SDVMIVAGTLVNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPV 125

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           D+YVPGCPPTAEAL+YGIL LQ+KIRR   +
Sbjct: 126 DVYVPGCPPTAEALLYGILQLQEKIRRTNTI 156


>gi|152980178|ref|YP_001353153.1| NADH dehydrogenase I chain B [Janthinobacterium sp. Marseille]
 gi|218527992|sp|A6SY06|NUOB_JANMA RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|151280255|gb|ABR88665.1| NADH dehydrogenase I chain B [Janthinobacterium sp. Marseille]
          Length = 158

 Score =  245 bits (625), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 113/151 (74%), Positives = 128/151 (84%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           + ++GF+ T+ D+L+ W RTGS+  MTFGLACCAVEMM A   RYDL+RFG   R SPRQ
Sbjct: 6   VLNEGFVTTTADKLINWTRTGSMWPMTFGLACCAVEMMHAGASRYDLDRFGVVFRPSPRQ 65

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           SDVMIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPV
Sbjct: 66  SDVMIVAGTLCNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPV 125

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           D+YVPGCPPTAEAL+YGI+ LQ KIRR   +
Sbjct: 126 DVYVPGCPPTAEALLYGIMQLQNKIRRTNTI 156


>gi|15239782|ref|NP_196738.1| NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial
           [Arabidopsis thaliana]
 gi|2499327|sp|Q42577|NDUS7_ARATH RecName: Full=NADH-ubiquinone oxidoreductase 20 kDa subunit,
           mitochondrial; AltName: Full=Complex I-20kD;
           Short=CI-20kD; Flags: Precursor
 gi|16226316|gb|AAL16132.1|AF428300_1 AT5g11770/T22P22_160 [Arabidopsis thaliana]
 gi|643090|emb|CAA58887.1| NADH dehydrogenase [Arabidopsis thaliana]
 gi|7573391|emb|CAB87695.1| NADH dehydrogenase (ubiquinone) [Arabidopsis thaliana]
 gi|15810287|gb|AAL07031.1| putative NADH dehydrogenase (ubiquinone) [Arabidopsis thaliana]
 gi|20466764|gb|AAM20699.1| NADH dehydrogenase / ubiquinone [Arabidopsis thaliana]
 gi|21537333|gb|AAM61674.1| NADH dehydrogenase ubiquinone [Arabidopsis thaliana]
 gi|22136468|gb|AAM91312.1| NADH dehydrogenase / ubiquinone [Arabidopsis thaliana]
 gi|332004336|gb|AED91719.1| NADH dehydrogenase (ubiquinone) Fe-S protein 7 [Arabidopsis
           thaliana]
          Length = 218

 Score =  245 bits (625), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 114/142 (80%), Positives = 124/142 (87%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           F+++ VD L+ WARTGS+  MTFGLACCAVEMM     RYDL+RFG   R SPRQSD MI
Sbjct: 67  FVISKVDDLMNWARTGSIWPMTFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDCMI 126

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP
Sbjct: 127 VAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 186

Query: 158 GCPPTAEALIYGILLLQKKIRR 179
           GCPPTAEAL+YG+L LQKKI R
Sbjct: 187 GCPPTAEALLYGLLQLQKKINR 208


>gi|218528068|sp|Q9PGJ4|NUOB_XYLFA RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
          Length = 184

 Score =  245 bits (625), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 115/150 (76%), Positives = 128/150 (85%)

Query: 30  SSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS 89
            S +  KG++ TSVD L+ WARTGS+  MTFGLACCAVEMM A   R DL+R+G   R S
Sbjct: 29  ESPLLQKGYVTTSVDALLNWARTGSMWPMTFGLACCAVEMMHAGAARLDLDRYGIVFRPS 88

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQSDVMIVAGTL NKMA ALR+VYDQMP+P++VISMGSCANGGGYYHYSYSVVRGCDRI
Sbjct: 89  PRQSDVMIVAGTLVNKMAPALRKVYDQMPDPKWVISMGSCANGGGYYHYSYSVVRGCDRI 148

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           VPVD+YVPGCPPTAEAL+YGIL LQKKI R
Sbjct: 149 VPVDVYVPGCPPTAEALVYGILQLQKKIWR 178


>gi|71275689|ref|ZP_00651974.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit [Xylella fastidiosa
           Dixon]
 gi|71897855|ref|ZP_00680081.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit [Xylella fastidiosa
           Ann-1]
 gi|170729490|ref|YP_001774923.1| NADH dehydrogenase subunit B [Xylella fastidiosa M12]
 gi|254767800|sp|B0U1W6|NUOB_XYLFM RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|71163580|gb|EAO13297.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit [Xylella fastidiosa
           Dixon]
 gi|71732410|gb|EAO34464.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit [Xylella fastidiosa
           Ann-1]
 gi|167964283|gb|ACA11293.1| NADH dehydrogenase [Xylella fastidiosa M12]
          Length = 184

 Score =  245 bits (625), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 115/154 (74%), Positives = 129/154 (83%)

Query: 30  SSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS 89
            S +  KG++ TSVD L+ WARTGS+  MTFGLACCAVEMM A   R DL+R+G   R S
Sbjct: 29  ESPLLQKGYVTTSVDALLNWARTGSMWPMTFGLACCAVEMMHAGAARLDLDRYGIVFRPS 88

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQSDVMIVAGTL NKMA ALR+VYDQMP+P++VISMGSCANGGGYYHYSYSVVRGCDRI
Sbjct: 89  PRQSDVMIVAGTLVNKMAPALRKVYDQMPDPKWVISMGSCANGGGYYHYSYSVVRGCDRI 148

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           VPVD+YVPGCPPTAEAL+YGIL LQKKI R   +
Sbjct: 149 VPVDVYVPGCPPTAEALVYGILQLQKKIWRTQTI 182


>gi|226372670|gb|ACO51960.1| NADH dehydrogenase iron-sulfur protein 7, mitochondrial precursor
           [Rana catesbeiana]
          Length = 217

 Score =  244 bits (624), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 124/172 (72%), Positives = 138/172 (80%), Gaps = 3/172 (1%)

Query: 4   TTVNQKIISGQSSCSLEKVDADFSRISSEITHKG-FLVTSVDQLVTWARTGSLMWMTFGL 62
           T  N+  IS  +S   +K  A  +  SS  + KG F+VT +D LV WAR  SL  MTFGL
Sbjct: 33  TADNENSIS--ASLVRQKSSAVPATKSSVPSGKGEFIVTKLDDLVNWARRSSLWPMTFGL 90

Query: 63  ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122
           ACCAVEMM  + PRYD++RFG   RASPRQ+DVMIVAGTLTNKMA ALR+VYDQMPEPRY
Sbjct: 91  ACCAVEMMHMAAPRYDMDRFGVVFRASPRQADVMIVAGTLTNKMAPALRKVYDQMPEPRY 150

Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQ 174
           V+SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQ
Sbjct: 151 VVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQ 202


>gi|71897767|ref|ZP_00679993.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit [Xylella fastidiosa
           Ann-1]
 gi|71732322|gb|EAO34376.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit [Xylella fastidiosa
           Ann-1]
          Length = 184

 Score =  244 bits (624), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 115/154 (74%), Positives = 129/154 (83%)

Query: 30  SSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS 89
            S +  KG++ TSVD L+ WARTGS+  MTFGLACCAVEMM A   R DL+R+G   R S
Sbjct: 29  ESPLLQKGYVTTSVDALLNWARTGSMWPMTFGLACCAVEMMHAGAARLDLDRYGIVFRPS 88

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQSDVMIVAGTL NKMA ALR+VYDQMP+P++VISMGSCANGGGYYHYSYSVVRGCDRI
Sbjct: 89  PRQSDVMIVAGTLVNKMAPALRKVYDQMPDPKWVISMGSCANGGGYYHYSYSVVRGCDRI 148

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           VPVD+YVPGCPPTAEAL+YGIL LQKKI R   +
Sbjct: 149 VPVDVYVPGCPPTAEALVYGILQLQKKIWRTQTI 182


>gi|71906589|ref|YP_284176.1| NADH dehydrogenase subunit B [Dechloromonas aromatica RCB]
 gi|123627979|sp|Q47HH5|NUOB_DECAR RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|71846210|gb|AAZ45706.1| NADH dehydrogenase subunit B [Dechloromonas aromatica RCB]
          Length = 158

 Score =  244 bits (624), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 115/151 (76%), Positives = 129/151 (85%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           +  +GF+ T+ D+L+ + RTGSL  MTFGLACCAVEM+ A + RYDL+RFG   R SPRQ
Sbjct: 6   VLQEGFVTTTADKLINYMRTGSLWPMTFGLACCAVEMIHAGVSRYDLDRFGVVFRPSPRQ 65

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           SDVMIVAGTLTNKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPV
Sbjct: 66  SDVMIVAGTLTNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPV 125

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           DIYVPGCPPTAEALIYGI+ LQ KIRR   +
Sbjct: 126 DIYVPGCPPTAEALIYGIIQLQNKIRRTNTI 156


>gi|221199657|ref|ZP_03572701.1| NADH-quinone oxidoreductase, B subunit [Burkholderia multivorans
           CGD2M]
 gi|221205443|ref|ZP_03578458.1| NADH-quinone oxidoreductase, B subunit [Burkholderia multivorans
           CGD2]
 gi|221174281|gb|EEE06713.1| NADH-quinone oxidoreductase, B subunit [Burkholderia multivorans
           CGD2]
 gi|221180942|gb|EEE13345.1| NADH-quinone oxidoreductase, B subunit [Burkholderia multivorans
           CGD2M]
          Length = 153

 Score =  244 bits (624), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 114/148 (77%), Positives = 126/148 (85%)

Query: 36  KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDV 95
           +GF+ T+ D+L+ W RTGSL  MTFGLACCAVEMM A   RYDL+RFG   R SPRQSDV
Sbjct: 3   EGFVTTTADKLINWTRTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGVVFRPSPRQSDV 62

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
           MIVAGTL NKMA ALRRVYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVD+Y
Sbjct: 63  MIVAGTLCNKMAPALRRVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVY 122

Query: 156 VPGCPPTAEALIYGILLLQKKIRRVGNV 183
           VPGCPPTAEAL+YG++ LQ KIRR   +
Sbjct: 123 VPGCPPTAEALVYGVIQLQAKIRRTNTI 150


>gi|224088884|ref|XP_002308574.1| predicted protein [Populus trichocarpa]
 gi|118481270|gb|ABK92582.1| unknown [Populus trichocarpa]
 gi|222854550|gb|EEE92097.1| predicted protein [Populus trichocarpa]
          Length = 213

 Score =  244 bits (624), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 122/172 (70%), Positives = 135/172 (78%), Gaps = 8/172 (4%)

Query: 16  SCSLEKVDADFSRI----SSEIT----HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAV 67
           S S E   A ++R     SS +T       F+++ VD L+ WARTGS+  MTFGLACCAV
Sbjct: 32  SLSPEPTPAPYTRAPPPSSSSLTGLSKPAEFVISKVDSLMNWARTGSIWPMTFGLACCAV 91

Query: 68  EMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMG 127
           EMM     RYDL+RFG   R SPRQSD MIVAGTLTNKMA ALR+VYDQMPEPR+VISMG
Sbjct: 92  EMMHTGAARYDLDRFGIIFRPSPRQSDCMIVAGTLTNKMAPALRKVYDQMPEPRWVISMG 151

Query: 128 SCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           SCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG+L LQKKI R
Sbjct: 152 SCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGLLQLQKKIHR 203


>gi|3342734|gb|AAC27669.1| NUKM_HUMAN, partial CDS [Homo sapiens]
          Length = 158

 Score =  244 bits (624), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 114/142 (80%), Positives = 126/142 (88%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           ++V  +D LV WAR  SL  MTFGLACCAVEMM  + PRYD++RFG   RASPRQSDVMI
Sbjct: 7   YVVAKLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQSDVMI 66

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGTLTNKMA ALR+VYDQMPEPRYV+SMGSCANGGGYYHYSYSVVRGCDRIVPVDIY+P
Sbjct: 67  VAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYIP 126

Query: 158 GCPPTAEALIYGILLLQKKIRR 179
           GCPPTAEAL+YGIL LQ+KI+R
Sbjct: 127 GCPPTAEALLYGILQLQRKIKR 148


>gi|91782613|ref|YP_557819.1| NADH dehydrogenase subunit B [Burkholderia xenovorans LB400]
 gi|170696398|ref|ZP_02887527.1| NADH-quinone oxidoreductase, B subunit [Burkholderia graminis
           C4D1M]
 gi|186476763|ref|YP_001858233.1| NADH dehydrogenase subunit B [Burkholderia phymatum STM815]
 gi|187923341|ref|YP_001894983.1| NADH dehydrogenase subunit B [Burkholderia phytofirmans PsJN]
 gi|209518514|ref|ZP_03267335.1| NADH-quinone oxidoreductase, B subunit [Burkholderia sp. H160]
 gi|295676038|ref|YP_003604562.1| NADH-quinone oxidoreductase, B subunit [Burkholderia sp. CCGE1002]
 gi|296160630|ref|ZP_06843445.1| NADH-quinone oxidoreductase, B subunit [Burkholderia sp. Ch1-1]
 gi|307730339|ref|YP_003907563.1| NADH-quinone oxidoreductase subunit B [Burkholderia sp. CCGE1003]
 gi|323525437|ref|YP_004227590.1| NADH-quinone oxidoreductase subunit B [Burkholderia sp. CCGE1001]
 gi|123358972|sp|Q142H2|NUOB_BURXL RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|218528024|sp|B2JDM7|NUOB_BURP8 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|218528025|sp|B2T2E8|NUOB_BURPP RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|91686567|gb|ABE29767.1| NADH dehydrogenase subunit B [Burkholderia xenovorans LB400]
 gi|170138726|gb|EDT06925.1| NADH-quinone oxidoreductase, B subunit [Burkholderia graminis
           C4D1M]
 gi|184193222|gb|ACC71187.1| NADH-quinone oxidoreductase, B subunit [Burkholderia phymatum
           STM815]
 gi|187714535|gb|ACD15759.1| NADH-quinone oxidoreductase, B subunit [Burkholderia phytofirmans
           PsJN]
 gi|209501059|gb|EEA01094.1| NADH-quinone oxidoreductase, B subunit [Burkholderia sp. H160]
 gi|295435881|gb|ADG15051.1| NADH-quinone oxidoreductase, B subunit [Burkholderia sp. CCGE1002]
 gi|295889156|gb|EFG68959.1| NADH-quinone oxidoreductase, B subunit [Burkholderia sp. Ch1-1]
 gi|307584874|gb|ADN58272.1| NADH-quinone oxidoreductase, B subunit [Burkholderia sp. CCGE1003]
 gi|323382439|gb|ADX54530.1| NADH-quinone oxidoreductase, B subunit [Burkholderia sp. CCGE1001]
          Length = 159

 Score =  244 bits (624), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 113/151 (74%), Positives = 127/151 (84%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           +  +GF+ T+ D+L+ W RTGSL  MTFGLACCAVEMM A   RYDL+RFG   R SPRQ
Sbjct: 6   VLKEGFVTTTADKLINWTRTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGVVFRPSPRQ 65

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           SDVMIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPV
Sbjct: 66  SDVMIVAGTLCNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPV 125

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           D+YVPGCPPTAEAL+YG++ LQ KIRR   +
Sbjct: 126 DVYVPGCPPTAEALVYGVIQLQAKIRRTNTI 156


>gi|67642191|ref|ZP_00440951.1| NADH-quinone oxidoreductase chain b (nadh dehydrogenasei, chain b)
           (ndh-1, chain b) [Burkholderia mallei GB8 horse 4]
 gi|217420025|ref|ZP_03451531.1| NADH-quinone oxidoreductase, B subunit [Burkholderia pseudomallei
           576]
 gi|226195363|ref|ZP_03790952.1| NADH-quinone oxidoreductase, B subunit [Burkholderia pseudomallei
           Pakistan 9]
 gi|237811583|ref|YP_002896034.1| NADH-quinone oxidoreductase, b subunit [Burkholderia pseudomallei
           MSHR346]
 gi|242316907|ref|ZP_04815923.1| NADH-quinone oxidoreductase, B subunit [Burkholderia pseudomallei
           1106b]
 gi|217397329|gb|EEC37345.1| NADH-quinone oxidoreductase, B subunit [Burkholderia pseudomallei
           576]
 gi|225932565|gb|EEH28563.1| NADH-quinone oxidoreductase, B subunit [Burkholderia pseudomallei
           Pakistan 9]
 gi|237506251|gb|ACQ98569.1| NADH-quinone oxidoreductase, b subunit [Burkholderia pseudomallei
           MSHR346]
 gi|238523287|gb|EEP86726.1| NADH-quinone oxidoreductase chain b (nadh dehydrogenasei, chain b)
           (ndh-1, chain b) [Burkholderia mallei GB8 horse 4]
 gi|242140146|gb|EES26548.1| NADH-quinone oxidoreductase, B subunit [Burkholderia pseudomallei
           1106b]
          Length = 153

 Score =  244 bits (624), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 114/148 (77%), Positives = 126/148 (85%)

Query: 36  KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDV 95
           +GF+ T+ D+L+ W RTGSL  MTFGLACCAVEMM A   RYDL+RFG   R SPRQSDV
Sbjct: 3   EGFVTTTADKLINWTRTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGVVFRPSPRQSDV 62

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
           MIVAGTL NKMA ALRRVYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVD+Y
Sbjct: 63  MIVAGTLCNKMAPALRRVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVY 122

Query: 156 VPGCPPTAEALIYGILLLQKKIRRVGNV 183
           VPGCPPTAEAL+YG++ LQ KIRR   +
Sbjct: 123 VPGCPPTAEALVYGVIQLQAKIRRTSTI 150


>gi|297811291|ref|XP_002873529.1| hypothetical protein ARALYDRAFT_488014 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297319366|gb|EFH49788.1| hypothetical protein ARALYDRAFT_488014 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 211

 Score =  244 bits (624), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 114/142 (80%), Positives = 124/142 (87%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           F+++ VD L+ WARTGS+  MTFGLACCAVEMM     RYDL+RFG   R SPRQSD MI
Sbjct: 67  FVISKVDDLMNWARTGSIWPMTFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDCMI 126

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP
Sbjct: 127 VAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 186

Query: 158 GCPPTAEALIYGILLLQKKIRR 179
           GCPPTAEAL+YG+L LQKKI R
Sbjct: 187 GCPPTAEALLYGLLQLQKKINR 208


>gi|88812975|ref|ZP_01128218.1| NADH dehydrogenase beta subunit [Nitrococcus mobilis Nb-231]
 gi|88789753|gb|EAR20877.1| NADH dehydrogenase beta subunit [Nitrococcus mobilis Nb-231]
          Length = 158

 Score =  244 bits (624), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 113/151 (74%), Positives = 128/151 (84%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           +  +G + TS D+L+ WARTGSL  MTFGLACCAVEMM A   RYDL+RFG   R SPRQ
Sbjct: 6   VLERGVVTTSADKLINWARTGSLWPMTFGLACCAVEMMHAGASRYDLDRFGIVFRPSPRQ 65

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           SDVMIVAGTL NKMA ALRRVYDQM +P++VISMGSCANGGGYYHYSY+VVRGCDRIVPV
Sbjct: 66  SDVMIVAGTLVNKMAPALRRVYDQMADPKWVISMGSCANGGGYYHYSYAVVRGCDRIVPV 125

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           D+YVPGCPPTAEAL++GI+ LQKKIRR   +
Sbjct: 126 DVYVPGCPPTAEALLFGIIQLQKKIRRTNTI 156


>gi|219130938|ref|XP_002185609.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217402949|gb|EEC42907.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 166

 Score =  244 bits (623), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 113/141 (80%), Positives = 126/141 (89%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           + ++ VD LV WAR GSL  MTFGLACCAVEMM A+  RYD+ERFG   RASPRQSDVMI
Sbjct: 15  YAISRVDDLVNWARKGSLWPMTFGLACCAVEMMHAAASRYDMERFGMVFRASPRQSDVMI 74

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGTLTNKMA ALR+VYDQMPEPR+V+SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP
Sbjct: 75  VAGTLTNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 134

Query: 158 GCPPTAEALIYGILLLQKKIR 178
           GCPPTAEAL+YG++ LQKK++
Sbjct: 135 GCPPTAEALLYGLIQLQKKVK 155


>gi|332023286|gb|EGI63540.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 7,
           mitochondrial [Acromyrmex echinatior]
          Length = 224

 Score =  244 bits (623), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 111/143 (77%), Positives = 125/143 (87%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           + +   D L+ W R GSL  MTFGLACCAVEMM  + PRYD++RFG   RASPRQSDV+I
Sbjct: 73  YALARADDLLNWGRKGSLWPMTFGLACCAVEMMHIAAPRYDMDRFGVVFRASPRQSDVII 132

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGTLTNKMA ALRR+YDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRI+PVDIYVP
Sbjct: 133 VAGTLTNKMAPALRRIYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVP 192

Query: 158 GCPPTAEALIYGILLLQKKIRRV 180
           GCPPTAEAL+YG+L LQKKI+R+
Sbjct: 193 GCPPTAEALLYGVLQLQKKIKRM 215


>gi|225704208|gb|ACO07950.1| NADH dehydrogenase iron-sulfur protein 7, mitochondrial precursor
           [Oncorhynchus mykiss]
          Length = 218

 Score =  244 bits (623), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 113/142 (79%), Positives = 125/142 (88%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           +++T +D LV WAR  SL  MTFGLACCAVEMM  + PRYD++RFG   RASP Q+DVMI
Sbjct: 67  YVITKLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPGQADVMI 126

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSY+VVRGCDRIVPVDIYVP
Sbjct: 127 VAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYAVVRGCDRIVPVDIYVP 186

Query: 158 GCPPTAEALIYGILLLQKKIRR 179
           GCPPTAEAL+YG L LQKKI+R
Sbjct: 187 GCPPTAEALLYGTLQLQKKIKR 208


>gi|331212725|ref|XP_003307632.1| NADH-ubiquinone oxidoreductase subunit [Puccinia graminis f. sp.
           tritici CRL 75-36-700-3]
 gi|309298035|gb|EFP74626.1| NADH-ubiquinone oxidoreductase subunit [Puccinia graminis f. sp.
           tritici CRL 75-36-700-3]
          Length = 261

 Score =  244 bits (623), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 111/143 (77%), Positives = 128/143 (89%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           ++++++D++V WAR GS+  MTFGLACCAVEMM  +  RYD +RFG   RASPRQSDVMI
Sbjct: 110 YVISTIDKIVNWARQGSIWPMTFGLACCAVEMMHMAAARYDQDRFGIIFRASPRQSDVMI 169

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP
Sbjct: 170 VAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 229

Query: 158 GCPPTAEALIYGILLLQKKIRRV 180
           GCPPTAEAL+YG+L LQ+K+RR 
Sbjct: 230 GCPPTAEALMYGLLQLQRKMRRT 252


>gi|323452394|gb|EGB08268.1| NADH dehydrogenase subunit 10 [Aureococcus anophagefferens]
          Length = 162

 Score =  244 bits (623), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 112/141 (79%), Positives = 127/141 (90%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           F+VT VD+LV WAR GS+  MTFGLACCAVEMM ++  RYD+ERFG   RASPRQSDVMI
Sbjct: 11  FMVTKVDELVNWARKGSIWPMTFGLACCAVEMMHSATARYDMERFGMVFRASPRQSDVMI 70

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGTLTNKMA ALR+VYDQMPEPR+V+SMGSCANGGGYYHYSY+VVRG DRIVPVDIYVP
Sbjct: 71  VAGTLTNKMAPALRKVYDQMPEPRWVLSMGSCANGGGYYHYSYAVVRGVDRIVPVDIYVP 130

Query: 158 GCPPTAEALIYGILLLQKKIR 178
           GCPPTAEAL+YG++ LQKK++
Sbjct: 131 GCPPTAEALLYGLIQLQKKVK 151


>gi|94309873|ref|YP_583083.1| NADH dehydrogenase subunit B [Cupriavidus metallidurans CH34]
 gi|113867071|ref|YP_725560.1| NADH dehydrogenase subunit B [Ralstonia eutropha H16]
 gi|194289160|ref|YP_002005067.1| NADH dehydrogenase subunit b [Cupriavidus taiwanensis LMG 19424]
 gi|122947021|sp|Q0KCS9|NUOB_RALEH RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|218527987|sp|B3R3W8|NUOB_CUPTR RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|218528006|sp|Q1LPW2|NUOB_RALME RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|93353725|gb|ABF07814.1| NADH dehydrogenase chain B [Cupriavidus metallidurans CH34]
 gi|113525847|emb|CAJ92192.1| NADH dehydrogenase chain B [Ralstonia eutropha H16]
 gi|193222995|emb|CAQ69000.1| NADH:ubiquinone oxidoreductase complex I, chain B [Cupriavidus
           taiwanensis LMG 19424]
          Length = 160

 Score =  244 bits (623), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 113/151 (74%), Positives = 128/151 (84%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           + ++GF+ T+ D+L+ W RTGSL  MTFGLACCAVEMM A   RYD++RFG   R SPRQ
Sbjct: 6   VLNEGFVTTTADKLINWTRTGSLWPMTFGLACCAVEMMHAGAARYDMDRFGVIFRPSPRQ 65

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           SDVMIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPV
Sbjct: 66  SDVMIVAGTLCNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPV 125

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           DIYVPGCPPTAEALIYG++ LQ KI+R   +
Sbjct: 126 DIYVPGCPPTAEALIYGVIQLQNKIKRTNTI 156


>gi|21243431|ref|NP_643013.1| NADH dehydrogenase subunit B [Xanthomonas axonopodis pv. citri str.
           306]
 gi|21108984|gb|AAM37549.1| NADH-ubiquinone oxidoreductase NQO6 subunit [Xanthomonas axonopodis
           pv. citri str. 306]
          Length = 191

 Score =  244 bits (623), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 115/154 (74%), Positives = 129/154 (83%)

Query: 30  SSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS 89
            + +  KG++ TSVD L+ WARTGS+  MTFGLACCAVEMM A   R DL+R+G   R S
Sbjct: 36  ENPLLEKGYVTTSVDALLNWARTGSMWPMTFGLACCAVEMMHAGASRLDLDRYGVVFRPS 95

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQSDVMIVAGTL NKMA ALR+VYDQMP+P++VISMGSCANGGGYYHYSYSVVRGCDRI
Sbjct: 96  PRQSDVMIVAGTLVNKMAPALRKVYDQMPDPKWVISMGSCANGGGYYHYSYSVVRGCDRI 155

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           VPVDIYVPGCPPTAEAL+YGIL LQKKI R   +
Sbjct: 156 VPVDIYVPGCPPTAEALVYGILQLQKKIWRTQTI 189


>gi|186920122|ref|YP_001874776.1| NADH dehydrogenase subunit 10 [Hemiselmis andersenii]
 gi|186461068|gb|ACC78230.1| NADH dehydrogenase subunit 10 [Hemiselmis andersenii]
          Length = 182

 Score =  244 bits (623), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 113/146 (77%), Positives = 128/146 (87%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           F+++ +D L+ WAR GSL  MTFGLACCAVEMM A   RYD +RFG   RASPRQSDVMI
Sbjct: 31  FVISKLDDLLNWARRGSLWPMTFGLACCAVEMMHAGASRYDFDRFGIIFRASPRQSDVMI 90

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSY+VVRGCDR+VPVDIYVP
Sbjct: 91  VAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYAVVRGCDRVVPVDIYVP 150

Query: 158 GCPPTAEALIYGILLLQKKIRRVGNV 183
           GCPPTAEAL+YGI+ LQKKI++  N+
Sbjct: 151 GCPPTAEALLYGIVQLQKKIKQNKNL 176


>gi|78485163|ref|YP_391088.1| NADH dehydrogenase subunit B [Thiomicrospira crunogena XCL-2]
 gi|123555687|sp|Q31HF9|NUOB_THICR RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|78363449|gb|ABB41414.1| NADH dehydrogenase I chain B [Thiomicrospira crunogena XCL-2]
          Length = 158

 Score =  244 bits (623), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 114/151 (75%), Positives = 127/151 (84%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           +  +G + TS D+L+ WARTGSL  MTFGLACCAVEMM A   RYDL+RFG   R SPRQ
Sbjct: 6   VLKEGVVTTSADKLINWARTGSLWPMTFGLACCAVEMMHAGASRYDLDRFGIIFRPSPRQ 65

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           SDVMIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPV
Sbjct: 66  SDVMIVAGTLVNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPV 125

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           D+YVPGCPPTAEAL+YGI+ LQ KI+R   +
Sbjct: 126 DVYVPGCPPTAEALLYGIIQLQNKIKRTNTI 156


>gi|148361101|ref|YP_001252308.1| NADH dehydrogenase I subunit B [Legionella pneumophila str. Corby]
 gi|218527993|sp|A5IHW2|NUOB_LEGPC RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|148282874|gb|ABQ56962.1| NADH dehydrogenase I, B subunit [Legionella pneumophila str. Corby]
          Length = 158

 Score =  244 bits (622), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 115/149 (77%), Positives = 129/149 (86%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP 90
           +E+  K F +T+V++LV WAR+GS+  MTFGLACCAVEMM     RYDL+RFG   R SP
Sbjct: 4   AELEKKVFELTTVEKLVGWARSGSMWPMTFGLACCAVEMMHVGAARYDLDRFGIIFRPSP 63

Query: 91  RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150
           RQSDVMIVAGTL NKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRIV
Sbjct: 64  RQSDVMIVAGTLCNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIV 123

Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           PVD+YVPGCPPTAEAL+YGI+ LQ KIRR
Sbjct: 124 PVDVYVPGCPPTAEALLYGIIQLQNKIRR 152


>gi|330817791|ref|YP_004361496.1| NADH dehydrogenase subunit B [Burkholderia gladioli BSR3]
 gi|327370184|gb|AEA61540.1| NADH dehydrogenase subunit B [Burkholderia gladioli BSR3]
          Length = 159

 Score =  244 bits (622), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 113/151 (74%), Positives = 127/151 (84%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           +  +GF+ T+ D+L+ W RTGSL  MTFGLACCAVEMM A   RYDL+RFG   R SPRQ
Sbjct: 6   VLKEGFVTTTADKLINWTRTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGVVFRPSPRQ 65

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           SDVMIVAGTL NKMA ALRRVY+QM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPV
Sbjct: 66  SDVMIVAGTLCNKMAPALRRVYEQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPV 125

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           D+YVPGCPPTAEAL+YG++ LQ KIRR   +
Sbjct: 126 DVYVPGCPPTAEALVYGVIQLQAKIRRTSTI 156


>gi|190575277|ref|YP_001973122.1| NADH dehydrogenase subunit B [Stenotrophomonas maltophilia K279a]
 gi|194366603|ref|YP_002029213.1| NADH dehydrogenase subunit B [Stenotrophomonas maltophilia R551-3]
 gi|254524125|ref|ZP_05136180.1| NADH-ubiquinone oxidoreductase Nqo6 subunit [Stenotrophomonas sp.
           SKA14]
 gi|218528009|sp|B4SQT5|NUOB_STRM5 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|218528010|sp|B2FNX8|NUOB_STRMK RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|190013199|emb|CAQ46832.1| putative NADH dehydrogenase I chain B [Stenotrophomonas maltophilia
           K279a]
 gi|194349407|gb|ACF52530.1| NADH-quinone oxidoreductase, B subunit [Stenotrophomonas
           maltophilia R551-3]
 gi|219721716|gb|EED40241.1| NADH-ubiquinone oxidoreductase Nqo6 subunit [Stenotrophomonas sp.
           SKA14]
          Length = 184

 Score =  244 bits (622), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 114/154 (74%), Positives = 129/154 (83%)

Query: 30  SSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS 89
            + +  KGF+ TSVD L+ WARTGS+  MTFGLACCAVEMM A   R DL+R+G   R S
Sbjct: 29  DNPLLEKGFVTTSVDALLNWARTGSMWPMTFGLACCAVEMMHAGAARLDLDRYGVVFRPS 88

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQSDVMIVAGTL NKMA ALR+VYDQMP+P++VISMGSCANGGGYYHYSYSVVRGCDR+
Sbjct: 89  PRQSDVMIVAGTLVNKMAPALRKVYDQMPDPKWVISMGSCANGGGYYHYSYSVVRGCDRV 148

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           VPVD+YVPGCPPTAEAL+YGIL LQKKI R   +
Sbjct: 149 VPVDVYVPGCPPTAEALVYGILQLQKKIWRTQTI 182


>gi|21231959|ref|NP_637876.1| NADH dehydrogenase subunit B [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66767914|ref|YP_242676.1| NADH dehydrogenase subunit B [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|188991030|ref|YP_001903040.1| NADH dehydrogenase subunit B [Xanthomonas campestris pv. campestris
           str. B100]
 gi|21113690|gb|AAM41800.1| NADH-ubiquinone oxidoreductase NQO6 subunit [Xanthomonas campestris
           pv. campestris str. ATCC 33913]
 gi|66573246|gb|AAY48656.1| NADH-ubiquinone oxidoreductase NQO6 subunit [Xanthomonas campestris
           pv. campestris str. 8004]
 gi|167732790|emb|CAP50984.1| NADH-ubiquinone oxidoreductase NQO6 subunit [Xanthomonas campestris
           pv. campestris]
          Length = 191

 Score =  244 bits (622), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 115/154 (74%), Positives = 129/154 (83%)

Query: 30  SSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS 89
            + +  KG++ TSVD L+ WARTGS+  MTFGLACCAVEMM A   R DL+R+G   R S
Sbjct: 36  ENPLLEKGYVTTSVDALLNWARTGSMWPMTFGLACCAVEMMHAGAARLDLDRYGVVFRPS 95

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQSDVMIVAGTL NKMA ALR+VYDQMP+P++VISMGSCANGGGYYHYSYSVVRGCDRI
Sbjct: 96  PRQSDVMIVAGTLVNKMAPALRKVYDQMPDPKWVISMGSCANGGGYYHYSYSVVRGCDRI 155

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           VPVDIYVPGCPPTAEAL+YGIL LQKKI R   +
Sbjct: 156 VPVDIYVPGCPPTAEALVYGILQLQKKIWRTQTI 189


>gi|168050412|ref|XP_001777653.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162670996|gb|EDQ57555.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 174

 Score =  244 bits (622), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 118/159 (74%), Positives = 131/159 (82%), Gaps = 5/159 (3%)

Query: 30  SSEITHKG-----FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF 84
           +S  T KG     F+++ VD L+ WARTGS+  MTFGLACCAVEMM     RYDL+RFG 
Sbjct: 10  TSSTTSKGGPGAEFVLSKVDALMNWARTGSIWPMTFGLACCAVEMMHTGAARYDLDRFGI 69

Query: 85  APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR 144
             R SPRQSD MIVAGTLTNKMA ALR+VYDQMPEPR+V+SMGSCANGGGYYHYSYSVVR
Sbjct: 70  IFRPSPRQSDCMIVAGTLTNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSVVR 129

Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           GCDRIVPVDIYVPGCPPTAEAL+YG+L LQKKI R  +V
Sbjct: 130 GCDRIVPVDIYVPGCPPTAEALLYGLLQLQKKINRRKDV 168


>gi|58582858|ref|YP_201874.1| NADH dehydrogenase subunit B [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|84624723|ref|YP_452095.1| NADH dehydrogenase subunit B [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|166712613|ref|ZP_02243820.1| NADH dehydrogenase subunit B [Xanthomonas oryzae pv. oryzicola
           BLS256]
 gi|58427452|gb|AAW76489.1| NADH-ubiquinone oxidoreductase NQO6 subunit [Xanthomonas oryzae pv.
           oryzae KACC10331]
 gi|84368663|dbj|BAE69821.1| NADH-ubiquinone oxidoreductase NQO6 subunit [Xanthomonas oryzae pv.
           oryzae MAFF 311018]
          Length = 191

 Score =  244 bits (622), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 115/154 (74%), Positives = 129/154 (83%)

Query: 30  SSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS 89
            + +  KG++ TSVD L+ WARTGS+  MTFGLACCAVEMM A   R DL+R+G   R S
Sbjct: 36  ENPLLEKGYVTTSVDALLNWARTGSMWPMTFGLACCAVEMMHAGASRLDLDRYGVVFRPS 95

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQSDVMIVAGTL NKMA ALR+VYDQMP+P++VISMGSCANGGGYYHYSYSVVRGCDRI
Sbjct: 96  PRQSDVMIVAGTLVNKMAPALRKVYDQMPDPKWVISMGSCANGGGYYHYSYSVVRGCDRI 155

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           VPVDIYVPGCPPTAEAL+YGIL LQKKI R   +
Sbjct: 156 VPVDIYVPGCPPTAEALVYGILQLQKKIWRTQTI 189


>gi|330794647|ref|XP_003285389.1| NADH dehydrogenase [Dictyostelium purpureum]
 gi|325084659|gb|EGC38082.1| NADH dehydrogenase [Dictyostelium purpureum]
          Length = 178

 Score =  244 bits (622), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 112/145 (77%), Positives = 127/145 (87%)

Query: 39  LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIV 98
           +++ +D LV WARTGSL  MTFGLACCAVEMMQ    RYD++RFG  PRASPRQSD +IV
Sbjct: 28  VISKLDGLVNWARTGSLWPMTFGLACCAVEMMQGYAARYDMDRFGVIPRASPRQSDCIIV 87

Query: 99  AGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPG 158
           AGTLTNKMA ALR+VYDQMP PRYV+SMGSCANGGGYYHYSYSVVRGCDRI+PVD+Y+PG
Sbjct: 88  AGTLTNKMAPALRKVYDQMPNPRYVVSMGSCANGGGYYHYSYSVVRGCDRIIPVDVYMPG 147

Query: 159 CPPTAEALIYGILLLQKKIRRVGNV 183
           CPPTAEA +YGIL LQKK+RR  N+
Sbjct: 148 CPPTAEAFVYGILQLQKKMRREQNL 172


>gi|134095030|ref|YP_001100105.1| NADH dehydrogenase subunit B [Herminiimonas arsenicoxydans]
 gi|218527991|sp|A4G643|NUOB_HERAR RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|133738933|emb|CAL61980.1| NADH-quinone oxidoreductase subunit B (NADH dehydrogenase I subunit
           B) (NDH-1 subunit B) [Herminiimonas arsenicoxydans]
          Length = 158

 Score =  244 bits (622), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 112/151 (74%), Positives = 128/151 (84%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           + ++GF+ T+ D+L+ W RTGS+  MTFGLACCAVEMM A   RYD++RFG   R SPRQ
Sbjct: 6   VLNEGFVTTTADKLINWTRTGSMWPMTFGLACCAVEMMHAGASRYDMDRFGVVFRPSPRQ 65

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           SDVMIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPV
Sbjct: 66  SDVMIVAGTLCNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPV 125

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           D+YVPGCPPTAEAL+YGI+ LQ KIRR   +
Sbjct: 126 DVYVPGCPPTAEALLYGIMQLQNKIRRTNTI 156


>gi|238028142|ref|YP_002912373.1| NADH dehydrogenase subunit B [Burkholderia glumae BGR1]
 gi|237877336|gb|ACR29669.1| NADH-quinone oxidoreductase, B subunit [Burkholderia glumae BGR1]
          Length = 159

 Score =  244 bits (622), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 113/151 (74%), Positives = 127/151 (84%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           +  +GF+ T+ D+L+ W RTGSL  +TFGLACCAVEMM A   RYDL+RFG   R SPRQ
Sbjct: 6   VLKEGFVTTTADKLINWTRTGSLWPVTFGLACCAVEMMHAGAARYDLDRFGVVFRPSPRQ 65

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           SDVMIVAGTL NKMA ALRRVYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPV
Sbjct: 66  SDVMIVAGTLCNKMAPALRRVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPV 125

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           D+YVPGCPPTAEAL+YG++ LQ KIRR   +
Sbjct: 126 DVYVPGCPPTAEALVYGVIQLQAKIRRTSTI 156


>gi|218528065|sp|Q4UWB7|NUOB_XANC8 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|218528066|sp|B0RR99|NUOB_XANCB RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|218528067|sp|Q8P7T3|NUOB_XANCP RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
          Length = 184

 Score =  244 bits (622), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 115/154 (74%), Positives = 129/154 (83%)

Query: 30  SSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS 89
            + +  KG++ TSVD L+ WARTGS+  MTFGLACCAVEMM A   R DL+R+G   R S
Sbjct: 29  ENPLLEKGYVTTSVDALLNWARTGSMWPMTFGLACCAVEMMHAGAARLDLDRYGVVFRPS 88

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQSDVMIVAGTL NKMA ALR+VYDQMP+P++VISMGSCANGGGYYHYSYSVVRGCDRI
Sbjct: 89  PRQSDVMIVAGTLVNKMAPALRKVYDQMPDPKWVISMGSCANGGGYYHYSYSVVRGCDRI 148

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           VPVDIYVPGCPPTAEAL+YGIL LQKKI R   +
Sbjct: 149 VPVDIYVPGCPPTAEALVYGILQLQKKIWRTQTI 182


>gi|188577695|ref|YP_001914624.1| NADH dehydrogenase subunit B [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|238065244|sp|B2SVL8|NUOB_XANOP RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|188522147|gb|ACD60092.1| NADH-ubiquinone oxidoreductase 20 kda subunit [Xanthomonas oryzae
           pv. oryzae PXO99A]
          Length = 182

 Score =  244 bits (622), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 115/154 (74%), Positives = 129/154 (83%)

Query: 30  SSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS 89
            + +  KG++ TSVD L+ WARTGS+  MTFGLACCAVEMM A   R DL+R+G   R S
Sbjct: 27  ENPLLEKGYVTTSVDALLNWARTGSMWPMTFGLACCAVEMMHAGASRLDLDRYGVVFRPS 86

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQSDVMIVAGTL NKMA ALR+VYDQMP+P++VISMGSCANGGGYYHYSYSVVRGCDRI
Sbjct: 87  PRQSDVMIVAGTLVNKMAPALRKVYDQMPDPKWVISMGSCANGGGYYHYSYSVVRGCDRI 146

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           VPVDIYVPGCPPTAEAL+YGIL LQKKI R   +
Sbjct: 147 VPVDIYVPGCPPTAEALVYGILQLQKKIWRTQTI 180


>gi|78048408|ref|YP_364583.1| NADH dehydrogenase subunit B [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|294624677|ref|ZP_06703347.1| NADH dehydrogenase beta subunit [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|294666776|ref|ZP_06732010.1| NADH dehydrogenase beta subunit [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|325924676|ref|ZP_08186114.1| NADH dehydrogenase subunit B [Xanthomonas perforans 91-118]
 gi|123584672|sp|Q3BRN0|NUOB_XANC5 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|238065262|sp|Q8PJ41|NUOB_XANAC RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|78036838|emb|CAJ24531.1| NADH-ubiquinone oxidoreductase NQO6 subunit [Xanthomonas campestris
           pv. vesicatoria str. 85-10]
 gi|292601033|gb|EFF45100.1| NADH dehydrogenase beta subunit [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292603437|gb|EFF46854.1| NADH dehydrogenase beta subunit [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|325544882|gb|EGD16227.1| NADH dehydrogenase subunit B [Xanthomonas perforans 91-118]
          Length = 184

 Score =  244 bits (622), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 115/154 (74%), Positives = 129/154 (83%)

Query: 30  SSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS 89
            + +  KG++ TSVD L+ WARTGS+  MTFGLACCAVEMM A   R DL+R+G   R S
Sbjct: 29  ENPLLEKGYVTTSVDALLNWARTGSMWPMTFGLACCAVEMMHAGASRLDLDRYGVVFRPS 88

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQSDVMIVAGTL NKMA ALR+VYDQMP+P++VISMGSCANGGGYYHYSYSVVRGCDRI
Sbjct: 89  PRQSDVMIVAGTLVNKMAPALRKVYDQMPDPKWVISMGSCANGGGYYHYSYSVVRGCDRI 148

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           VPVDIYVPGCPPTAEAL+YGIL LQKKI R   +
Sbjct: 149 VPVDIYVPGCPPTAEALVYGILQLQKKIWRTQTI 182


>gi|148284880|ref|YP_001248970.1| NADH dehydrogenase subunit B [Orientia tsutsugamushi str. Boryong]
 gi|189183819|ref|YP_001937604.1| NADH dehydrogenase subunit B [Orientia tsutsugamushi str. Ikeda]
 gi|218528000|sp|A5CES0|NUOB_ORITB RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|218528001|sp|B3CSG9|NUOB_ORITI RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|146740319|emb|CAM80723.1| NADH dehydrogenase I chain B [Orientia tsutsugamushi str. Boryong]
 gi|189180590|dbj|BAG40370.1| NADH dehydrogenase I chain B [Orientia tsutsugamushi str. Ikeda]
          Length = 171

 Score =  244 bits (622), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 115/166 (69%), Positives = 139/166 (83%), Gaps = 1/166 (0%)

Query: 20  EKVDADFSRISSE-ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78
           E   +D + I ++ ++++GF++ +++ LV+WART SL  MTFGLACCA+EMMQ +  RYD
Sbjct: 3   ENTFSDTTSIYNQNLSNQGFILANLENLVSWARTRSLWPMTFGLACCAIEMMQTAGSRYD 62

Query: 79  LERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY 138
           ++R+G   R SPRQ+DVMIVAGTLTNKMA ALRRVYDQM EP++VISMGSCANGGGYYHY
Sbjct: 63  MDRYGMLFRPSPRQADVMIVAGTLTNKMAPALRRVYDQMTEPKWVISMGSCANGGGYYHY 122

Query: 139 SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           SYSVVRGCD+IVPVDIYVPGCPPT EAL+YGIL LQKKI R   VK
Sbjct: 123 SYSVVRGCDKIVPVDIYVPGCPPTPEALLYGILQLQKKINRTQQVK 168


>gi|325915540|ref|ZP_08177851.1| NADH dehydrogenase subunit B [Xanthomonas vesicatoria ATCC 35937]
 gi|325538256|gb|EGD09941.1| NADH dehydrogenase subunit B [Xanthomonas vesicatoria ATCC 35937]
          Length = 182

 Score =  244 bits (622), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 115/154 (74%), Positives = 129/154 (83%)

Query: 30  SSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS 89
            + +  KG++ TSVD L+ WARTGS+  MTFGLACCAVEMM A   R DL+R+G   R S
Sbjct: 27  ENPLLEKGYVTTSVDALLNWARTGSMWPMTFGLACCAVEMMHAGASRLDLDRYGVVFRPS 86

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQSDVMIVAGTL NKMA ALR+VYDQMP+P++VISMGSCANGGGYYHYSYSVVRGCDRI
Sbjct: 87  PRQSDVMIVAGTLVNKMAPALRKVYDQMPDPKWVISMGSCANGGGYYHYSYSVVRGCDRI 146

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           VPVDIYVPGCPPTAEAL+YGIL LQKKI R   +
Sbjct: 147 VPVDIYVPGCPPTAEALVYGILQLQKKIWRTQTI 180


>gi|300311096|ref|YP_003775188.1| NADH dehydrogenase I subunit B [Herbaspirillum seropedicae SmR1]
 gi|300073881|gb|ADJ63280.1| NADH dehydrogenase I (Chain B) oxidoreductase protein
           [Herbaspirillum seropedicae SmR1]
          Length = 158

 Score =  244 bits (622), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 111/151 (73%), Positives = 129/151 (85%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           + ++GF+ TS+D+++ W RTGSL  MTFGLACCAVEMM     RYDL+RFG   R SPRQ
Sbjct: 6   VLNEGFVTTSLDKVINWTRTGSLWPMTFGLACCAVEMMHVGASRYDLDRFGAVFRPSPRQ 65

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           SD+MIVAGTL NKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPV
Sbjct: 66  SDLMIVAGTLCNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPV 125

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           D+YVPGCPPTAEAL+YG++ LQ KI+R   +
Sbjct: 126 DVYVPGCPPTAEALLYGVIQLQNKIKRTNTI 156


>gi|289665174|ref|ZP_06486755.1| NADH dehydrogenase subunit B [Xanthomonas campestris pv. vasculorum
           NCPPB702]
 gi|289667379|ref|ZP_06488454.1| NADH dehydrogenase subunit B [Xanthomonas campestris pv. musacearum
           NCPPB4381]
 gi|238065260|sp|Q5GXT2|NUOB_XANOR RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|238065261|sp|Q2P0V6|NUOB_XANOM RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
          Length = 184

 Score =  243 bits (621), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 115/154 (74%), Positives = 129/154 (83%)

Query: 30  SSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS 89
            + +  KG++ TSVD L+ WARTGS+  MTFGLACCAVEMM A   R DL+R+G   R S
Sbjct: 29  ENPLLEKGYVTTSVDALLNWARTGSMWPMTFGLACCAVEMMHAGASRLDLDRYGVVFRPS 88

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQSDVMIVAGTL NKMA ALR+VYDQMP+P++VISMGSCANGGGYYHYSYSVVRGCDRI
Sbjct: 89  PRQSDVMIVAGTLVNKMAPALRKVYDQMPDPKWVISMGSCANGGGYYHYSYSVVRGCDRI 148

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           VPVDIYVPGCPPTAEAL+YGIL LQKKI R   +
Sbjct: 149 VPVDIYVPGCPPTAEALVYGILQLQKKIWRTQTI 182


>gi|325921410|ref|ZP_08183267.1| NADH dehydrogenase subunit B [Xanthomonas gardneri ATCC 19865]
 gi|325548168|gb|EGD19165.1| NADH dehydrogenase subunit B [Xanthomonas gardneri ATCC 19865]
          Length = 184

 Score =  243 bits (621), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 115/154 (74%), Positives = 129/154 (83%)

Query: 30  SSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS 89
            + +  KG++ TSVD L+ WARTGS+  MTFGLACCAVEMM A   R DL+R+G   R S
Sbjct: 29  ENPLLEKGYVTTSVDALLNWARTGSMWPMTFGLACCAVEMMHAGAARLDLDRYGVVFRPS 88

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQSDVMIVAGTL NKMA ALR+VYDQMP+P++VISMGSCANGGGYYHYSYSVVRGCDRI
Sbjct: 89  PRQSDVMIVAGTLVNKMAPALRKVYDQMPDPKWVISMGSCANGGGYYHYSYSVVRGCDRI 148

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           VPVDIYVPGCPPTAEAL+YGIL LQKKI R   +
Sbjct: 149 VPVDIYVPGCPPTAEALVYGILQLQKKIWRTQTI 182


>gi|73666917|ref|YP_302933.1| NADH dehydrogenase subunit B [Ehrlichia canis str. Jake]
 gi|72394058|gb|AAZ68335.1| NADH dehydrogenase subunit B [Ehrlichia canis str. Jake]
          Length = 185

 Score =  243 bits (621), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 115/150 (76%), Positives = 127/150 (84%), Gaps = 4/150 (2%)

Query: 34  THKGFLVTS----VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS 89
            H+GF+VT     +D +  WAR+ SL  MTFGLACCAVEMM  +  RYDL+R+G   RAS
Sbjct: 21  NHQGFMVTQFSDLIDYISNWARSNSLWPMTFGLACCAVEMMHTAASRYDLDRYGIMFRAS 80

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQ+DVMIVAGTLTNKMA ALR+VYDQM EPRYVISMGSCANGGGYYHYSYSVVRGCDRI
Sbjct: 81  PRQADVMIVAGTLTNKMAPALRKVYDQMTEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 140

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           VPVDIYVPGCPPTAEAL+YGIL LQ+KI R
Sbjct: 141 VPVDIYVPGCPPTAEALLYGILCLQQKINR 170


>gi|114052144|ref|NP_001040456.1| NADH-ubiquinone oxidoreductase Fe-S protein 7 [Bombyx mori]
 gi|95102968|gb|ABF51425.1| NADH-ubiquinone oxidoreductase Fe-S protein 7 [Bombyx mori]
          Length = 210

 Score =  243 bits (621), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 112/145 (77%), Positives = 127/145 (87%)

Query: 40  VTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVA 99
           V  +D L+ W R GSL  MTFGLACCAVEMM  + PRYD++R+G   RASPRQSDVMIVA
Sbjct: 61  VARLDDLLNWGRKGSLWPMTFGLACCAVEMMHIAAPRYDMDRYGVVFRASPRQSDVMIVA 120

Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGC 159
           GTLTNKMA ALR+VYDQMP+PR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGC
Sbjct: 121 GTLTNKMAPALRKVYDQMPDPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGC 180

Query: 160 PPTAEALIYGILLLQKKIRRVGNVK 184
           PPTAEAL+YG+L LQKKI+R+  ++
Sbjct: 181 PPTAEALLYGVLQLQKKIKRMKTIQ 205


>gi|296136705|ref|YP_003643947.1| hypothetical protein Tint_2267 [Thiomonas intermedia K12]
 gi|294340860|emb|CAZ89255.1| NADH-quinone oxidoreductase subunit 6 (NADH dehydrogenase I chain
           6) (NDH-1 subunit 6) [Thiomonas sp. 3As]
 gi|295796827|gb|ADG31617.1| hypothetical protein Tint_2267 [Thiomonas intermedia K12]
          Length = 158

 Score =  243 bits (621), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 112/151 (74%), Positives = 127/151 (84%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           +  +GF+ TS D+L+ W RTGSL  MTFGLACCAVEMM A   RYDL+RFG   R SPRQ
Sbjct: 6   VLQEGFITTSADKLINWTRTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGIVFRPSPRQ 65

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           SD+MIVAGTL NKMA ALR+VYDQM EPR+V+SMGSCANGGGYYHYSYSVVRGCDRIVPV
Sbjct: 66  SDLMIVAGTLCNKMAPALRKVYDQMAEPRWVLSMGSCANGGGYYHYSYSVVRGCDRIVPV 125

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           D+YVPGCPPTAEAL+YG++ LQ KIRR   +
Sbjct: 126 DVYVPGCPPTAEALLYGLIQLQNKIRRTETI 156


>gi|291613539|ref|YP_003523696.1| NADH-quinone oxidoreductase, B subunit [Sideroxydans lithotrophicus
           ES-1]
 gi|291583651|gb|ADE11309.1| NADH-quinone oxidoreductase, B subunit [Sideroxydans lithotrophicus
           ES-1]
          Length = 159

 Score =  243 bits (621), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 116/152 (76%), Positives = 130/152 (85%), Gaps = 1/152 (0%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APRASPR 91
           +  KGF+ TS D ++ + RTGSL  MTFGLACCAVEMM A++PRYDL+RFG  A R SPR
Sbjct: 6   VLEKGFITTSADTVINYVRTGSLWPMTFGLACCAVEMMHAALPRYDLDRFGAGAFRPSPR 65

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
           QSDVMIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVP
Sbjct: 66  QSDVMIVAGTLCNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVP 125

Query: 152 VDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           VDIYVPGCPPTAEAL+YGI+ LQ KI+R   +
Sbjct: 126 VDIYVPGCPPTAEALLYGIIQLQNKIKRTNTI 157


>gi|195033324|ref|XP_001988662.1| GH11286 [Drosophila grimshawi]
 gi|193904662|gb|EDW03529.1| GH11286 [Drosophila grimshawi]
          Length = 209

 Score =  243 bits (621), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 113/147 (76%), Positives = 129/147 (87%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           + VT +D L+ W R GS+  MTFGLACCAVEMM  + PRYD++RFG   RASPRQ+D+MI
Sbjct: 58  WTVTRLDDLLNWGRKGSIWPMTFGLACCAVEMMHIAAPRYDMDRFGVVFRASPRQTDLMI 117

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP
Sbjct: 118 VAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 177

Query: 158 GCPPTAEALIYGILLLQKKIRRVGNVK 184
           GCPPTAEAL+YGIL LQKKI+R+  ++
Sbjct: 178 GCPPTAEALMYGILQLQKKIKRMRTLQ 204


>gi|145256397|ref|XP_001401369.1| NADH-ubiquinone oxidoreductase subunit [Aspergillus niger CBS
           513.88]
 gi|134058270|emb|CAK38461.1| unnamed protein product [Aspergillus niger]
          Length = 232

 Score =  243 bits (620), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 118/177 (66%), Positives = 138/177 (77%), Gaps = 2/177 (1%)

Query: 4   TTVNQKIISGQSSCSLEKVDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFG 61
           T + Q+  SGQ+  +  KV  +    S E       +++T++DQ+  WAR  SL  MTFG
Sbjct: 45  TAIEQRGQSGQALTASGKVRKEVPLPSQEKKEGAMQYVLTTLDQVANWARQSSLWPMTFG 104

Query: 62  LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPR 121
           LACCAVEMM  S PRYD +R G   RASPRQSDVMIVAGTLTNKMA ALR+VYDQMP+PR
Sbjct: 105 LACCAVEMMHLSTPRYDQDRLGIIFRASPRQSDVMIVAGTLTNKMAPALRQVYDQMPDPR 164

Query: 122 YVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           +V+SMGSCANGGGYYHYSYSVVRGCDRIVPVD+YVPGCPPT+EAL+YGI  LQKK+R
Sbjct: 165 WVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTSEALMYGIFQLQKKMR 221


>gi|124266597|ref|YP_001020601.1| NADH dehydrogenase subunit B [Methylibium petroleiphilum PM1]
 gi|218527995|sp|A2SFM7|NUOB_METPP RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|124259372|gb|ABM94366.1| NADH dehydrogenase [Methylibium petroleiphilum PM1]
          Length = 158

 Score =  243 bits (620), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 113/151 (74%), Positives = 128/151 (84%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           +  +GF+ TS D+L+ W++TGSL  MTFGLACCAVEMM A   RYD++RFG   R SPRQ
Sbjct: 6   VLKEGFITTSADKLINWSKTGSLWPMTFGLACCAVEMMHAGAARYDIDRFGMLFRPSPRQ 65

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           SD+MIVAGTL NKMA ALRRVYDQM EPR+V+SMGSCANGGGYYHYSYSVVRGCDRIVPV
Sbjct: 66  SDLMIVAGTLCNKMAPALRRVYDQMAEPRWVLSMGSCANGGGYYHYSYSVVRGCDRIVPV 125

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           D+YVPGCPPTAEAL+YGIL LQ KIRR   +
Sbjct: 126 DVYVPGCPPTAEALLYGILQLQAKIRRENTI 156


>gi|325983288|ref|YP_004295690.1| NADH-quinone oxidoreductase, B subunit [Nitrosomonas sp. AL212]
 gi|325532807|gb|ADZ27528.1| NADH-quinone oxidoreductase, B subunit [Nitrosomonas sp. AL212]
          Length = 158

 Score =  243 bits (620), Expect = 9e-63,   Method: Compositional matrix adjust.
 Identities = 113/149 (75%), Positives = 125/149 (83%)

Query: 35  HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSD 94
            KGF+ TS+D ++ W RTGS+  MTFGLACCAVEMM+    RYDL+RFG   R SPRQSD
Sbjct: 8   EKGFITTSLDSIINWGRTGSMWPMTFGLACCAVEMMETGASRYDLDRFGIVFRPSPRQSD 67

Query: 95  VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154
           VMIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVDI
Sbjct: 68  VMIVAGTLCNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 127

Query: 155 YVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           YVPGCPPTAEAL+YGI+ LQ KI R   +
Sbjct: 128 YVPGCPPTAEALLYGIIQLQNKINRTNTI 156


>gi|239816482|ref|YP_002945392.1| NADH dehydrogenase subunit B [Variovorax paradoxus S110]
 gi|259514693|sp|C5CT19|NUOB_VARPS RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|239803059|gb|ACS20126.1| NADH-quinone oxidoreductase, B subunit [Variovorax paradoxus S110]
          Length = 159

 Score =  243 bits (620), Expect = 9e-63,   Method: Compositional matrix adjust.
 Identities = 111/151 (73%), Positives = 129/151 (85%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           +  +GF+ T+ D +V WA+TGSL  MTFGLACCAVEMM A   RYD++RFG   R SPRQ
Sbjct: 6   VMKEGFVTTTYDSVVNWAKTGSLWPMTFGLACCAVEMMHAGAARYDIDRFGMLFRPSPRQ 65

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           SD+MIVAGTL NKMA ALR+VYDQMPEPR+V+SMGSCANGGGYYHYSYSVVRGCDRIVPV
Sbjct: 66  SDLMIVAGTLCNKMAPALRKVYDQMPEPRWVLSMGSCANGGGYYHYSYSVVRGCDRIVPV 125

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           D+YVPGCPPTAEAL+YG++ LQ+KIRR   +
Sbjct: 126 DVYVPGCPPTAEALLYGVIQLQQKIRRTNTI 156


>gi|319779199|ref|YP_004130112.1| NADH-ubiquinone oxidoreductase chain B [Taylorella equigenitalis
           MCE9]
 gi|317109223|gb|ADU91969.1| NADH-ubiquinone oxidoreductase chain B [Taylorella equigenitalis
           MCE9]
          Length = 159

 Score =  243 bits (620), Expect = 9e-63,   Method: Compositional matrix adjust.
 Identities = 114/151 (75%), Positives = 129/151 (85%)

Query: 29  ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88
           +S    +KGFLVTS D ++ W RTGS+  +TFGLACCAVEMM A   RYDL++FG   R 
Sbjct: 1   MSDTSNNKGFLVTSTDSVLHWLRTGSMWPVTFGLACCAVEMMHAGAARYDLDQFGIIFRP 60

Query: 89  SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 148
           SPRQSD+MIVAGTLTNKMA ALR+VYDQM EPR+V+SMGSCANGGGYYHYSY+VVRGCDR
Sbjct: 61  SPRQSDIMIVAGTLTNKMAPALRKVYDQMAEPRWVVSMGSCANGGGYYHYSYAVVRGCDR 120

Query: 149 IVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           IVPVDIYVPGCPPTAEALIYG+L LQ K+RR
Sbjct: 121 IVPVDIYVPGCPPTAEALIYGMLQLQNKMRR 151


>gi|58584500|ref|YP_198073.1| NADH dehydrogenase subunit B [Wolbachia endosymbiont strain TRS of
           Brugia malayi]
 gi|75497991|sp|Q5GT43|NUOB_WOLTR RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|58418816|gb|AAW70831.1| NADH:ubiquinone oxidoreductase chain B [Wolbachia endosymbiont
           strain TRS of Brugia malayi]
          Length = 168

 Score =  243 bits (620), Expect = 9e-63,   Method: Compositional matrix adjust.
 Identities = 116/165 (70%), Positives = 136/165 (82%), Gaps = 8/165 (4%)

Query: 23  DADFSRISSEITHKGFLVTS----VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78
           + D++R   E    GFLVT     +D ++ WAR+GSL  MTFGLACCAVEMM  +  RYD
Sbjct: 8   NDDWNRYKKE----GFLVTKFGSLIDYVINWARSGSLWPMTFGLACCAVEMMHTASSRYD 63

Query: 79  LERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY 138
           L+R+G   RASPRQ+DVMIVAGTLTNKMA+ALR+VYDQM +P+YV+SMGSCANGGGYYHY
Sbjct: 64  LDRYGIMFRASPRQADVMIVAGTLTNKMAAALRKVYDQMADPKYVVSMGSCANGGGYYHY 123

Query: 139 SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           SYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG+L LQ KI+R  N+
Sbjct: 124 SYSVVRGCDRIVPVDIYVPGCPPTAEALLYGMLCLQNKIKRTQNI 168


>gi|319794667|ref|YP_004156307.1| NADH-quinone oxidoreductase, b subunit [Variovorax paradoxus EPS]
 gi|315597130|gb|ADU38196.1| NADH-quinone oxidoreductase, B subunit [Variovorax paradoxus EPS]
          Length = 159

 Score =  243 bits (620), Expect = 9e-63,   Method: Compositional matrix adjust.
 Identities = 111/151 (73%), Positives = 129/151 (85%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           +  +GF+ T+ D +V WA+TGSL  MTFGLACCAVEMM A   RYD++RFG   R SPRQ
Sbjct: 6   VLKEGFVTTTYDSVVNWAKTGSLWPMTFGLACCAVEMMHAGAARYDIDRFGMLFRPSPRQ 65

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           SD+MIVAGTL NKMA ALR+VYDQMPEPR+V+SMGSCANGGGYYHYSYSVVRGCDRIVPV
Sbjct: 66  SDLMIVAGTLCNKMAPALRKVYDQMPEPRWVLSMGSCANGGGYYHYSYSVVRGCDRIVPV 125

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           D+YVPGCPPTAEAL+YG++ LQ+KIRR   +
Sbjct: 126 DVYVPGCPPTAEALLYGVIQLQQKIRRTNTI 156


>gi|285017793|ref|YP_003375504.1| NADH-quinone oxidoreductase chain b (nadh dehydrogenaseI chain b)
           (ndh-1, chain b) (nuo2) oxidoreductase [Xanthomonas
           albilineans GPE PC73]
 gi|283473011|emb|CBA15516.1| probable nadh-quinone oxidoreductase chain b (nadh dehydrogenaseI
           chain b) (ndh-1, chain b) (nuo2). oxidoreductase protein
           [Xanthomonas albilineans]
          Length = 184

 Score =  243 bits (620), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 114/154 (74%), Positives = 129/154 (83%)

Query: 30  SSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS 89
            + +  KG++ TSVD L+ WARTGS+  MTFGLACCAVEMM A   R DL+R+G   R S
Sbjct: 29  ENPLLEKGYVTTSVDALLNWARTGSMWPMTFGLACCAVEMMHAGAARLDLDRYGVVFRPS 88

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQSDVMIVAGTL NKMA ALR+VYDQMP+P++VISMGSCANGGGYYHYSYSVVRGCDRI
Sbjct: 89  PRQSDVMIVAGTLVNKMAPALRKVYDQMPDPKWVISMGSCANGGGYYHYSYSVVRGCDRI 148

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           VPVD+YVPGCPPTAEAL+YGIL LQKKI R   +
Sbjct: 149 VPVDVYVPGCPPTAEALVYGILQLQKKIWRTQTI 182


>gi|145589233|ref|YP_001155830.1| NADH-quinone oxidoreductase, B subunit [Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1]
 gi|171463527|ref|YP_001797640.1| NADH-quinone oxidoreductase, B subunit [Polynucleobacter
           necessarius subsp. necessarius STIR1]
 gi|218528004|sp|B1XUJ9|NUOB_POLNS RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|218528005|sp|A4SXQ2|NUOB_POLSQ RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|145047639|gb|ABP34266.1| NADH dehydrogenase subunit B [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
 gi|171193065|gb|ACB44026.1| NADH-quinone oxidoreductase, B subunit [Polynucleobacter
           necessarius subsp. necessarius STIR1]
          Length = 160

 Score =  243 bits (619), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 114/151 (75%), Positives = 125/151 (82%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           +  +GF+ T+ DQL+ W R GSL  MTFGLACCAVEMM A   RYDL+RFG   R SPRQ
Sbjct: 6   VLKEGFVTTTADQLINWTRNGSLWPMTFGLACCAVEMMHAGASRYDLDRFGVVFRPSPRQ 65

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           SD+MIVAGTL NKMA ALR+VYDQMPEPR+VISMGSCANGGGYYH SYSVVRGCDRIVPV
Sbjct: 66  SDLMIVAGTLCNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHNSYSVVRGCDRIVPV 125

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           DIYVPGCPPTAEALIYGI+ LQ KI R   +
Sbjct: 126 DIYVPGCPPTAEALIYGIIQLQSKIARTSTI 156


>gi|2499328|sp|Q43844|NDUS7_SOLTU RecName: Full=NADH-ubiquinone oxidoreductase 20 kDa subunit,
           mitochondrial; AltName: Full=Complex I-20 kDa;
           Short=CI-20kD; Flags: Precursor
 gi|1235607|emb|CAA65451.1| NADH-ubiquinone oxidoreductase [Solanum tuberosum]
          Length = 213

 Score =  243 bits (619), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 113/142 (79%), Positives = 124/142 (87%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           ++++ VD L+ WAR GS+  MTFGLACCAVEMM A   RYD +RFG   R SPRQSDVMI
Sbjct: 62  YVISKVDDLMNWARRGSIWPMTFGLACCAVEMMHAGAARYDFDRFGIIFRPSPRQSDVMI 121

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSY+VVRGCDRIVPVDIYVP
Sbjct: 122 VAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYAVVRGCDRIVPVDIYVP 181

Query: 158 GCPPTAEALIYGILLLQKKIRR 179
           GCPPTAEAL+YGIL LQKKI R
Sbjct: 182 GCPPTAEALLYGILQLQKKINR 203


>gi|328874905|gb|EGG23270.1| NADH-ubiquinone oxidoreductase 20 kDa subunit [Dictyostelium
           fasciculatum]
          Length = 179

 Score =  243 bits (619), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 114/169 (67%), Positives = 134/169 (79%)

Query: 11  ISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMM 70
           ++ Q+   L K+ A   + +   +    +++ +D LV WARTGS   MTFGLACCAVEMM
Sbjct: 1   MASQAGQHLSKLLASSFKAAPPSSVPEIVISKLDGLVNWARTGSFWPMTFGLACCAVEMM 60

Query: 71  QASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCA 130
                RYD++RFG  PRASPRQSD +IVAGTLTNKMA ALR+VYDQMP PRYVISMGSCA
Sbjct: 61  HGYAARYDMDRFGVIPRASPRQSDCIIVAGTLTNKMAPALRKVYDQMPNPRYVISMGSCA 120

Query: 131 NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           NGGGYYHYSYSVVRGCDRI+PVD+Y+PGCPPTAEA +YGIL LQKKI+R
Sbjct: 121 NGGGYYHYSYSVVRGCDRIIPVDVYIPGCPPTAEAFVYGILQLQKKIQR 169


>gi|281202313|gb|EFA76518.1| NADH-ubiquinone oxidoreductase 20 kDa subunit [Polysphondylium
           pallidum PN500]
          Length = 178

 Score =  243 bits (619), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 115/167 (68%), Positives = 132/167 (79%)

Query: 13  GQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQA 72
            Q+   L K+ A   + +   +    +++ +D LV WARTGSL  MTFGLACCAVEMM  
Sbjct: 2   AQAGQHLSKLLASSFKAAPPSSVPEIVISKLDGLVNWARTGSLWPMTFGLACCAVEMMHG 61

Query: 73  SMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANG 132
              RYDL+RFG  PRASPRQSD +IVAGTLTNKMA ALR+VYDQMP PRYVISMGSCANG
Sbjct: 62  YAARYDLDRFGIIPRASPRQSDCIIVAGTLTNKMAPALRKVYDQMPLPRYVISMGSCANG 121

Query: 133 GGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           GGYYHYSYSVVRGCDRI+PVD+Y+PGCPPTAEA +YG+L LQKKI R
Sbjct: 122 GGYYHYSYSVVRGCDRIIPVDVYIPGCPPTAEAFVYGVLQLQKKINR 168


>gi|125772981|ref|XP_001357749.1| GA15185 [Drosophila pseudoobscura pseudoobscura]
 gi|54637481|gb|EAL26883.1| GA15185 [Drosophila pseudoobscura pseudoobscura]
          Length = 211

 Score =  243 bits (619), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 112/147 (76%), Positives = 128/147 (87%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           + +  +D L+ W R GSL  MTFGLACCAVEMM  + PRYD++RFG   RASPRQ+DVMI
Sbjct: 60  WTLARLDDLLNWGRKGSLWPMTFGLACCAVEMMHIAAPRYDMDRFGMVFRASPRQTDVMI 119

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP
Sbjct: 120 VAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 179

Query: 158 GCPPTAEALIYGILLLQKKIRRVGNVK 184
           GCPPTAEAL+YG+L LQKK+RR+  ++
Sbjct: 180 GCPPTAEALLYGLLQLQKKVRRMRTLQ 206


>gi|77745495|gb|ABB02646.1| NADH-ubiquinone oxidoreductase subunit-like [Solanum tuberosum]
          Length = 213

 Score =  243 bits (619), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 113/142 (79%), Positives = 124/142 (87%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           ++++ VD L+ WAR GS+  MTFGLACCAVEMM A   RYD +RFG   R SPRQSDVMI
Sbjct: 62  YVISKVDDLMNWARRGSIWPMTFGLACCAVEMMHAGAARYDFDRFGIIFRPSPRQSDVMI 121

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSY+VVRGCDRIVPVDIYVP
Sbjct: 122 VAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYAVVRGCDRIVPVDIYVP 181

Query: 158 GCPPTAEALIYGILLLQKKIRR 179
           GCPPTAEAL+YGIL LQKKI R
Sbjct: 182 GCPPTAEALLYGILQLQKKINR 203


>gi|212528728|ref|XP_002144521.1| NADH-ubiquinone oxidoreductase subunit B, putative [Penicillium
           marneffei ATCC 18224]
 gi|210073919|gb|EEA28006.1| NADH-ubiquinone oxidoreductase subunit B, putative [Penicillium
           marneffei ATCC 18224]
          Length = 225

 Score =  243 bits (619), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 119/180 (66%), Positives = 138/180 (76%), Gaps = 2/180 (1%)

Query: 1   MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWM 58
           M +T + +++ S  S  +  KV  +    S E       + +T++DQ+  WAR  SL  M
Sbjct: 35  MPVTAIERQLESSSSLTASGKVRREVPLPSQEKKEGAMQYALTTLDQIANWARQSSLWPM 94

Query: 59  TFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMP 118
           TFGLACCAVEMM  S PRYD +R G   RASPRQSDVMIVAGTLTNKMA ALR+VYDQMP
Sbjct: 95  TFGLACCAVEMMHLSTPRYDQDRLGIIFRASPRQSDVMIVAGTLTNKMAPALRQVYDQMP 154

Query: 119 EPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           +PR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT+EAL+YGI  LQKK+R
Sbjct: 155 DPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTSEALMYGIFQLQKKMR 214


>gi|119501352|ref|XP_001267433.1| NADH-ubiquinone oxidoreductase subunit B, putative [Neosartorya
           fischeri NRRL 181]
 gi|119415598|gb|EAW25536.1| NADH-ubiquinone oxidoreductase subunit B, putative [Neosartorya
           fischeri NRRL 181]
          Length = 228

 Score =  243 bits (619), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 118/177 (66%), Positives = 137/177 (77%), Gaps = 2/177 (1%)

Query: 4   TTVNQKIISGQSSCSLEKVDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFG 61
           T + ++  SGQ   +  KV  +    S E       +++T++DQ+  WAR  SL  MTFG
Sbjct: 41  TALERQAQSGQPLTASGKVRKEVPLPSQEKKEGAMQYVLTTLDQVANWARQSSLWPMTFG 100

Query: 62  LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPR 121
           LACCAVEMM  S PRYD +R G   RASPRQSDVMIVAGTLTNKMA ALR+VYDQMP+PR
Sbjct: 101 LACCAVEMMHLSTPRYDQDRLGIIFRASPRQSDVMIVAGTLTNKMAPALRQVYDQMPDPR 160

Query: 122 YVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           +VISMGSCANGGGYYHYSYSVVRGCDRIVPVD+YVPGCPPT+EAL+YGI  LQKK+R
Sbjct: 161 WVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTSEALMYGIFQLQKKMR 217


>gi|112434059|gb|ABI18374.1| NADH-quinone oxidoreductase chain B [Ehrlichia ruminantium]
          Length = 172

 Score =  242 bits (618), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 115/153 (75%), Positives = 128/153 (83%), Gaps = 4/153 (2%)

Query: 34  THKGFLVTSVDQLV----TWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS 89
            H+GF+VT    L+    +WAR+ SL  MTFGLACCAVEMM  +  RYDL+R+G   RAS
Sbjct: 18  NHRGFMVTKFSDLINYVSSWARSNSLWPMTFGLACCAVEMMHTAASRYDLDRYGVMFRAS 77

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQ+DVMIVAGTLTNKMA ALR+VYDQM EPRYVISMGSCANGGGYYHYSYSVVRGCDRI
Sbjct: 78  PRQADVMIVAGTLTNKMAPALRKVYDQMTEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 137

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
           VPVDIYVPGCPPTAEAL+YGIL LQ+KI R  +
Sbjct: 138 VPVDIYVPGCPPTAEALLYGILCLQQKINRTAS 170


>gi|195158809|ref|XP_002020277.1| GL13892 [Drosophila persimilis]
 gi|194117046|gb|EDW39089.1| GL13892 [Drosophila persimilis]
          Length = 205

 Score =  242 bits (618), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 112/147 (76%), Positives = 128/147 (87%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           + +  +D L+ W R GSL  MTFGLACCAVEMM  + PRYD++RFG   RASPRQ+DVMI
Sbjct: 54  WTLARLDDLLNWGRKGSLWPMTFGLACCAVEMMHIAAPRYDMDRFGMVFRASPRQTDVMI 113

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP
Sbjct: 114 VAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 173

Query: 158 GCPPTAEALIYGILLLQKKIRRVGNVK 184
           GCPPTAEAL+YG+L LQKK+RR+  ++
Sbjct: 174 GCPPTAEALLYGLLQLQKKVRRMRTLQ 200


>gi|114330926|ref|YP_747148.1| NADH dehydrogenase subunit B [Nitrosomonas eutropha C91]
 gi|122314158|sp|Q0AHJ9|NUOB_NITEC RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|114307940|gb|ABI59183.1| NADH dehydrogenase subunit B [Nitrosomonas eutropha C91]
          Length = 158

 Score =  242 bits (618), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 114/148 (77%), Positives = 125/148 (84%)

Query: 36  KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDV 95
           KGF+ T++D L+ W RTGS+  MTFGLACCAVEMMQ    RYDL+RFG   R SPRQSDV
Sbjct: 9   KGFVTTNLDSLINWGRTGSMWPMTFGLACCAVEMMQTGASRYDLDRFGIVFRPSPRQSDV 68

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
           MIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY
Sbjct: 69  MIVAGTLCNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 128

Query: 156 VPGCPPTAEALIYGILLLQKKIRRVGNV 183
           VPGCPPTAEAL+YGI+ LQ KI R   +
Sbjct: 129 VPGCPPTAEALLYGIIQLQNKIWRTNTI 156


>gi|70994922|ref|XP_752238.1| NADH-ubiquinone oxidoreductase subunit B [Aspergillus fumigatus
           Af293]
 gi|66849872|gb|EAL90200.1| NADH-ubiquinone oxidoreductase subunit B, putative [Aspergillus
           fumigatus Af293]
 gi|159124846|gb|EDP49963.1| NADH-ubiquinone oxidoreductase subunit B, putative [Aspergillus
           fumigatus A1163]
          Length = 223

 Score =  242 bits (618), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 118/177 (66%), Positives = 136/177 (76%), Gaps = 2/177 (1%)

Query: 4   TTVNQKIISGQSSCSLEKVDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFG 61
           T +  +  SGQ   +  KV  +    S E       +++T++DQ+  WAR  SL  MTFG
Sbjct: 36  TALEHQAQSGQPLTASGKVRKEVPLPSQEKKEGAMQYVLTTLDQVANWARQSSLWPMTFG 95

Query: 62  LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPR 121
           LACCAVEMM  S PRYD +R G   RASPRQSDVMIVAGTLTNKMA ALR+VYDQMP+PR
Sbjct: 96  LACCAVEMMHLSTPRYDQDRLGIIFRASPRQSDVMIVAGTLTNKMAPALRQVYDQMPDPR 155

Query: 122 YVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           +VISMGSCANGGGYYHYSYSVVRGCDRIVPVD+YVPGCPPT+EAL+YGI  LQKK+R
Sbjct: 156 WVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTSEALMYGIFQLQKKMR 212


>gi|332526748|ref|ZP_08402850.1| NADH dehydrogenase subunit B [Rubrivivax benzoatilyticus JA2]
 gi|332111151|gb|EGJ11183.1| NADH dehydrogenase subunit B [Rubrivivax benzoatilyticus JA2]
          Length = 158

 Score =  242 bits (618), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 111/151 (73%), Positives = 129/151 (85%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           +  +GF+ TSVD+L+ W++TGSL  MTFGLACCA+EMM A   RYD++RFG   R SPRQ
Sbjct: 6   VIKEGFVTTSVDKLINWSKTGSLWPMTFGLACCAIEMMHAGAARYDMDRFGMLFRPSPRQ 65

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           SD+MIVAGTL NKMA ALR+VYDQM EPR+V+SMGSCANGGGYYHYSYSVVRGCDRIVPV
Sbjct: 66  SDLMIVAGTLCNKMAPALRKVYDQMAEPRWVLSMGSCANGGGYYHYSYSVVRGCDRIVPV 125

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           D+YVPGCPPTAEAL+YGI+ LQ KIRR   +
Sbjct: 126 DVYVPGCPPTAEALLYGIMQLQSKIRRENTI 156


>gi|115400845|ref|XP_001216011.1| NADH-ubiquinone oxidoreductase 19.3 kDa subunit, mitochondrial
           precursor [Aspergillus terreus NIH2624]
 gi|114191677|gb|EAU33377.1| NADH-ubiquinone oxidoreductase 19.3 kDa subunit, mitochondrial
           precursor [Aspergillus terreus NIH2624]
          Length = 307

 Score =  242 bits (618), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 117/179 (65%), Positives = 138/179 (77%), Gaps = 2/179 (1%)

Query: 4   TTVNQKIISGQSSCSLEKVDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFG 61
           T + ++  +GQS  +  KV  +    S E       +++T++DQ+  WAR  SL  MTFG
Sbjct: 120 TALERQGQTGQSLTASGKVRKEVPLASQEKKEGAMQYVLTTLDQVANWARQSSLWPMTFG 179

Query: 62  LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPR 121
           LACCAVEMM  S PRYD +R G   RASPRQSDVMIVAGTLTNKMA ALR+VYDQMP+PR
Sbjct: 180 LACCAVEMMHLSTPRYDQDRLGIIFRASPRQSDVMIVAGTLTNKMAPALRQVYDQMPDPR 239

Query: 122 YVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           +V+SMGSCANGGGYYHYSYSVVRGCDRIVPVD+YVPGCPPT+EAL+YGI  LQKK+R  
Sbjct: 240 WVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTSEALMYGIFQLQKKMRHT 298


>gi|190571252|ref|YP_001975610.1| NADH dehydrogenase I, B subunit [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|213018650|ref|ZP_03334458.1| NADH dehydrogenase I, B subunit [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
 gi|218528013|sp|B3CM42|NUOB_WOLPP RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|190357524|emb|CAQ54961.1| NADH dehydrogenase I, B subunit [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|212995601|gb|EEB56241.1| NADH dehydrogenase I, B subunit [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
          Length = 167

 Score =  242 bits (617), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 114/165 (69%), Positives = 136/165 (82%), Gaps = 8/165 (4%)

Query: 23  DADFSRISSEITHKGFLVTS----VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78
           + D++R   E    GFL+T     +D ++ WAR+GSL  MTFGLACCAVEMM  +  RYD
Sbjct: 7   NGDWNRYKKE----GFLITKFGDLIDYIMNWARSGSLWPMTFGLACCAVEMMHTASSRYD 62

Query: 79  LERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY 138
           L+R+G   RASPRQ+DVMIVAGTLTNKMA+ALR+VYDQM +P+YV+SMGSCANGGGYYHY
Sbjct: 63  LDRYGIIFRASPRQADVMIVAGTLTNKMAAALRKVYDQMADPKYVVSMGSCANGGGYYHY 122

Query: 139 SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           SYSVVRGCDRIVPVD+YVPGCPPTAEAL+YG+L LQ KI+R  N+
Sbjct: 123 SYSVVRGCDRIVPVDVYVPGCPPTAEALLYGMLCLQNKIKRTKNI 167


>gi|224824822|ref|ZP_03697929.1| NADH-quinone oxidoreductase, B subunit [Lutiella nitroferrum 2002]
 gi|224603315|gb|EEG09491.1| NADH-quinone oxidoreductase, B subunit [Lutiella nitroferrum 2002]
          Length = 158

 Score =  242 bits (617), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 113/151 (74%), Positives = 127/151 (84%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           I  KGF+ T+ D+L+ + RTGSL  MTFGLACCAVEMM A   RYDL+RFG   R SPRQ
Sbjct: 6   ILEKGFITTTADKLINYTRTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGVVFRPSPRQ 65

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           SD+MIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPV
Sbjct: 66  SDLMIVAGTLCNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPV 125

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           D+YVPGCPPTAEAL+YGI+ LQ KI+R   +
Sbjct: 126 DVYVPGCPPTAEALLYGIIQLQNKIKRTNTI 156


>gi|116782796|gb|ABK22662.1| unknown [Picea sitchensis]
          Length = 205

 Score =  242 bits (617), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 112/142 (78%), Positives = 123/142 (86%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           ++++ +D LV WAR GS+  MTFGLACCAVEMM     RYDL+RFG   R SPRQSD MI
Sbjct: 54  YVISKIDALVNWARKGSIWPMTFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDCMI 113

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP
Sbjct: 114 VAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 173

Query: 158 GCPPTAEALIYGILLLQKKIRR 179
           GCPPTAEAL+YG+L LQKKI R
Sbjct: 174 GCPPTAEALLYGLLQLQKKIHR 195


>gi|121998543|ref|YP_001003330.1| NADH-quinone oxidoreductase subunit B [Halorhodospira halophila
           SL1]
 gi|238065156|sp|A1WXW6|NUOB_HALHL RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|121589948|gb|ABM62528.1| NADH dehydrogenase subunit B [Halorhodospira halophila SL1]
          Length = 158

 Score =  242 bits (617), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 114/151 (75%), Positives = 126/151 (83%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           I  +G++ TS D+L+ WARTGSL  MTFGLACCAVEMM  +  RYD++R G   R SPRQ
Sbjct: 6   ILERGYVTTSADKLINWARTGSLWPMTFGLACCAVEMMHTAAGRYDMDRNGLIFRPSPRQ 65

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           SDVMIVAGTL NKMA ALR+VYDQMPEP++VISMGSCANGGGYYHYSYSV RGCDRIVPV
Sbjct: 66  SDVMIVAGTLCNKMAPALRKVYDQMPEPKWVISMGSCANGGGYYHYSYSVTRGCDRIVPV 125

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           DIYVPGCPPTAEAL YGIL LQ KIRR   +
Sbjct: 126 DIYVPGCPPTAEALYYGILQLQNKIRRTNTI 156


>gi|169774064|ref|XP_001821500.1| NADH-ubiquinone oxidoreductase subunit [Aspergillus oryzae RIB40]
 gi|238508860|ref|XP_002385611.1| NADH-ubiquinone oxidoreductase subunit B, putative [Aspergillus
           flavus NRRL3357]
 gi|83769362|dbj|BAE59498.1| unnamed protein product [Aspergillus oryzae]
 gi|220688358|gb|EED44712.1| NADH-ubiquinone oxidoreductase subunit B, putative [Aspergillus
           flavus NRRL3357]
          Length = 228

 Score =  242 bits (617), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 117/179 (65%), Positives = 136/179 (75%), Gaps = 2/179 (1%)

Query: 4   TTVNQKIISGQSSCSLEKVDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFG 61
           T +  K  SGQ   +  K+  +    S E       +++T++DQ+  WAR  SL  MTFG
Sbjct: 41  TALEHKGHSGQPLTASGKIRKEVPLPSQEKKEGAMQYVLTTLDQVANWARQSSLWPMTFG 100

Query: 62  LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPR 121
           LACCAVEMM  S PRYD +R G   RASPRQSDVMIVAGTLTNKMA ALR+VYDQMP+PR
Sbjct: 101 LACCAVEMMHLSTPRYDQDRLGIIFRASPRQSDVMIVAGTLTNKMAPALRQVYDQMPDPR 160

Query: 122 YVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           +V+SMGSCANGGGYYHYSYSVVRGCDRIVPVD+YVPGCPPT+EAL+YGI  LQKK+R  
Sbjct: 161 WVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTSEALMYGIFQLQKKMRHT 219


>gi|242088593|ref|XP_002440129.1| hypothetical protein SORBIDRAFT_09g026580 [Sorghum bicolor]
 gi|241945414|gb|EES18559.1| hypothetical protein SORBIDRAFT_09g026580 [Sorghum bicolor]
          Length = 202

 Score =  242 bits (617), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 115/142 (80%), Positives = 123/142 (86%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           F+V+ VD L+ WAR GS+  MTFGLACCAVEMM A   RYD +RFG   R SPRQSD MI
Sbjct: 51  FVVSKVDDLMNWARRGSIWPMTFGLACCAVEMMHAGASRYDFDRFGLIFRPSPRQSDCMI 110

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGTLTNKMA ALRRVYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP
Sbjct: 111 VAGTLTNKMAPALRRVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 170

Query: 158 GCPPTAEALIYGILLLQKKIRR 179
           GCPPTAEAL+YG+L LQKKI R
Sbjct: 171 GCPPTAEALLYGVLQLQKKINR 192


>gi|226939457|ref|YP_002794530.1| NuoB2 [Laribacter hongkongensis HLHK9]
 gi|254767794|sp|C1DCA4|NUOB_LARHH RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|226714383|gb|ACO73521.1| NuoB2 [Laribacter hongkongensis HLHK9]
          Length = 158

 Score =  242 bits (617), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 112/147 (76%), Positives = 126/147 (85%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           +  KGF+ TS D+++ W RTGSL  MTFGLACCAVEMM A   RYDL+RFG   R SPRQ
Sbjct: 6   VLEKGFITTSADKVLNWTRTGSLWPMTFGLACCAVEMMHAGASRYDLDRFGIVFRPSPRQ 65

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           SD+MIVAGTL NKMA ALR+VYDQM EPR+V+SMGSCANGGGYYHYSYSVVRGCDRIVPV
Sbjct: 66  SDLMIVAGTLCNKMAPALRKVYDQMAEPRWVLSMGSCANGGGYYHYSYSVVRGCDRIVPV 125

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179
           D+YVPGCPPTAEAL+YGI+ LQ KI+R
Sbjct: 126 DVYVPGCPPTAEALLYGIIQLQNKIKR 152


>gi|160871863|ref|ZP_02061995.1| NADH-quinone oxidoreductase chain b (nadh dehydrogenasei, chain b)
           (ndh-1, chain b) [Rickettsiella grylli]
 gi|159120662|gb|EDP46000.1| NADH-quinone oxidoreductase chain b (nadh dehydrogenasei, chain b)
           (ndh-1, chain b) [Rickettsiella grylli]
          Length = 160

 Score =  242 bits (617), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 111/151 (73%), Positives = 129/151 (85%)

Query: 29  ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88
           I S +  +GF  TS D+L+ WAR+GSL  M+FGLACCAVEMM ++  RYDL+RFG   R 
Sbjct: 3   IESLLQQQGFFTTSFDKLLAWARSGSLWPMSFGLACCAVEMMHSAASRYDLDRFGVVFRP 62

Query: 89  SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 148
           SPRQSDVMIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHY+YSVVRGCDR
Sbjct: 63  SPRQSDVMIVAGTLCNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYAYSVVRGCDR 122

Query: 149 IVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           IVPVD+YVPGCPPTAEAL+YG++ LQ KI++
Sbjct: 123 IVPVDVYVPGCPPTAEALVYGVIQLQNKIKK 153


>gi|303316328|ref|XP_003068166.1| NADH-ubiquinone oxidoreductase, putative [Coccidioides posadasii
           C735 delta SOWgp]
 gi|240107847|gb|EER26021.1| NADH-ubiquinone oxidoreductase, putative [Coccidioides posadasii
           C735 delta SOWgp]
 gi|320037899|gb|EFW19835.1| NADH-ubiquinone oxidoreductase 20 kDa subunit [Coccidioides
           posadasii str. Silveira]
          Length = 227

 Score =  242 bits (617), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 118/170 (69%), Positives = 133/170 (78%), Gaps = 3/170 (1%)

Query: 14  QSSCSLEKVDADFSRISSEITHKG---FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMM 70
           QSS +  K D     + S+   +G   F +T++DQ+  WAR  SL  MTFGLACCAVEMM
Sbjct: 49  QSSMTQTKKDRREVPLPSQQKKEGAMQFALTTLDQVANWARQSSLWPMTFGLACCAVEMM 108

Query: 71  QASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCA 130
             S PRYD +R G   RASPRQSDVMIVAGTLTNKMA ALR+VYDQMP+PR+VISMGSCA
Sbjct: 109 HLSTPRYDQDRLGIIFRASPRQSDVMIVAGTLTNKMAPALRQVYDQMPDPRWVISMGSCA 168

Query: 131 NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           NGGGYYHYSYSV RGCDRIVPVDIYVPGCPPT+EAL+YGI  LQKK+R  
Sbjct: 169 NGGGYYHYSYSVTRGCDRIVPVDIYVPGCPPTSEALMYGIFQLQKKMRHT 218


>gi|195385751|ref|XP_002051568.1| GJ16291 [Drosophila virilis]
 gi|194148025|gb|EDW63723.1| GJ16291 [Drosophila virilis]
          Length = 209

 Score =  242 bits (617), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 112/145 (77%), Positives = 127/145 (87%)

Query: 40  VTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVA 99
           VT +D L+ W R GSL  MTFGLACCAVEMM  + PRYD++RFG   RASPRQ+DV+IVA
Sbjct: 60  VTRLDDLLNWGRKGSLWPMTFGLACCAVEMMHIAAPRYDMDRFGVVFRASPRQTDVIIVA 119

Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGC 159
           GTLTNKMA ALR++YDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGC
Sbjct: 120 GTLTNKMAPALRKIYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGC 179

Query: 160 PPTAEALIYGILLLQKKIRRVGNVK 184
           PPTAEAL+Y IL LQKKI+R+  ++
Sbjct: 180 PPTAEALLYAILQLQKKIKRMRTLQ 204


>gi|77166022|ref|YP_344547.1| NADH dehydrogenase subunit B [Nitrosococcus oceani ATCC 19707]
 gi|254436391|ref|ZP_05049897.1| NADH-quinone oxidoreductase, B subunit subfamily [Nitrosococcus
           oceani AFC27]
 gi|300113266|ref|YP_003759841.1| NADH-quinone oxidoreductase subunit B [Nitrosococcus watsonii
           C-113]
 gi|123593538|sp|Q3J829|NUOB2_NITOC RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName:
           Full=NADH dehydrogenase I subunit B 2; AltName:
           Full=NDH-1 subunit B 2
 gi|76884336|gb|ABA59017.1| NADH dehydrogenase subunit B [Nitrosococcus oceani ATCC 19707]
 gi|207088081|gb|EDZ65354.1| NADH-quinone oxidoreductase, B subunit subfamily [Nitrosococcus
           oceani AFC27]
 gi|299539203|gb|ADJ27520.1| NADH-quinone oxidoreductase, B subunit [Nitrosococcus watsonii
           C-113]
          Length = 158

 Score =  242 bits (617), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 113/147 (76%), Positives = 126/147 (85%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           +  +G + T+ D+L+ WARTGSL  MTFGLACCAVEMM A   RYD++RFG   R SPRQ
Sbjct: 6   VLERGVVTTTADKLINWARTGSLWPMTFGLACCAVEMMHAGASRYDMDRFGVIFRPSPRQ 65

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           SDVMIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPV
Sbjct: 66  SDVMIVAGTLVNKMAPALRKVYDQMSEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPV 125

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179
           DIYVPGCPPTAEAL+YGI+ LQ KI+R
Sbjct: 126 DIYVPGCPPTAEALLYGIIQLQNKIKR 152


>gi|1171866|sp|P42027|NDUS7_BRAOL RecName: Full=NADH-ubiquinone oxidoreductase 20 kDa subunit,
           mitochondrial; AltName: Full=Complex I-20kD;
           Short=CI-20kD; Flags: Precursor
 gi|562282|emb|CAA57725.1| PSST subunit of NADH: ubiquinone oxidoreductase [Brassica oleracea]
          Length = 215

 Score =  242 bits (617), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 113/142 (79%), Positives = 123/142 (86%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           F+++ VD L+ WAR GS+  MTFGLACCAVEMM     RYDL+RFG   R SPRQSD MI
Sbjct: 64  FVISKVDDLMNWARRGSIWPMTFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDCMI 123

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP
Sbjct: 124 VAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 183

Query: 158 GCPPTAEALIYGILLLQKKIRR 179
           GCPPTAEAL+YG+L LQKKI R
Sbjct: 184 GCPPTAEALLYGLLQLQKKINR 205


>gi|195626816|gb|ACG35238.1| NADH-ubiquinone oxidoreductase 20 kDa subunit [Zea mays]
          Length = 200

 Score =  242 bits (617), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 114/142 (80%), Positives = 123/142 (86%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           F+V+ VD L+ WAR GS+  MTFGLACCAVEMM A   RYD +RFG   R SPRQSD MI
Sbjct: 49  FVVSKVDDLMNWARKGSIWPMTFGLACCAVEMMHAGASRYDFDRFGVIFRPSPRQSDCMI 108

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP
Sbjct: 109 VAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 168

Query: 158 GCPPTAEALIYGILLLQKKIRR 179
           GCPPTAEAL+YG+L LQKKI R
Sbjct: 169 GCPPTAEALLYGVLQLQKKINR 190


>gi|212721050|ref|NP_001131270.1| hypothetical protein LOC100192583 [Zea mays]
 gi|194691040|gb|ACF79604.1| unknown [Zea mays]
 gi|195641534|gb|ACG40235.1| NADH-ubiquinone oxidoreductase 20 kDa subunit [Zea mays]
          Length = 202

 Score =  242 bits (617), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 114/142 (80%), Positives = 123/142 (86%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           F+V+ VD L+ WAR GS+  MTFGLACCAVEMM A   RYD +RFG   R SPRQSD MI
Sbjct: 51  FVVSKVDDLMNWARKGSIWPMTFGLACCAVEMMHAGASRYDFDRFGVIFRPSPRQSDCMI 110

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP
Sbjct: 111 VAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 170

Query: 158 GCPPTAEALIYGILLLQKKIRR 179
           GCPPTAEAL+YG+L LQKKI R
Sbjct: 171 GCPPTAEALLYGVLQLQKKINR 192


>gi|332285016|ref|YP_004416927.1| NADH dehydrogenase subunit B [Pusillimonas sp. T7-7]
 gi|330428969|gb|AEC20303.1| NADH dehydrogenase subunit B [Pusillimonas sp. T7-7]
          Length = 158

 Score =  242 bits (617), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 111/151 (73%), Positives = 127/151 (84%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           I  +GF+ TS D+ + WA+TGSL  MTFGLACCAVEMM A   RYDL++FG   R SPRQ
Sbjct: 6   IMKEGFITTSADKFLNWAKTGSLWPMTFGLACCAVEMMHAGAARYDLDQFGIIFRPSPRQ 65

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           SD+MIVAGTL NKMA ALR+VYDQMPEPR+V+SMGSCANGGGYYHYSYSVVRGCDRIVPV
Sbjct: 66  SDLMIVAGTLCNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIVPV 125

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           D+YVPGCPPTAEAL+YG+L +Q KIR    +
Sbjct: 126 DVYVPGCPPTAEALVYGLLQMQNKIRLTNTI 156


>gi|226499630|ref|NP_001151765.1| LOC100285400 [Zea mays]
 gi|194708402|gb|ACF88285.1| unknown [Zea mays]
 gi|195621542|gb|ACG32601.1| NADH-ubiquinone oxidoreductase 20 kDa subunit [Zea mays]
 gi|195649579|gb|ACG44257.1| NADH-ubiquinone oxidoreductase 20 kDa subunit [Zea mays]
          Length = 200

 Score =  242 bits (617), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 114/142 (80%), Positives = 123/142 (86%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           F+V+ VD L+ WAR GS+  MTFGLACCAVEMM A   RYD +RFG   R SPRQSD MI
Sbjct: 49  FVVSKVDDLMNWARKGSIWPMTFGLACCAVEMMHAGASRYDFDRFGVIFRPSPRQSDCMI 108

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP
Sbjct: 109 VAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 168

Query: 158 GCPPTAEALIYGILLLQKKIRR 179
           GCPPTAEAL+YG+L LQKKI R
Sbjct: 169 GCPPTAEALLYGVLQLQKKINR 190


>gi|34496397|ref|NP_900612.1| NADH dehydrogenase subunit B [Chromobacterium violaceum ATCC 12472]
 gi|81656636|sp|Q7NZI0|NUOB1_CHRVO RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName:
           Full=NADH dehydrogenase I subunit B 1; AltName:
           Full=NDH-1 subunit B 1
 gi|34102250|gb|AAQ58616.1| NADH-ubiquinone oxidoreductase, chain B [Chromobacterium violaceum
           ATCC 12472]
          Length = 158

 Score =  242 bits (617), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 113/151 (74%), Positives = 127/151 (84%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           I  KGF+ T+ D+L+ + RTGSL  MTFGLACCAVEMM A   RYDL+RFG   R SPRQ
Sbjct: 6   ILEKGFVTTTADKLINYTRTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGVVFRPSPRQ 65

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           SD+MIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPV
Sbjct: 66  SDLMIVAGTLCNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPV 125

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           D+YVPGCPPTAEAL+YGI+ LQ KI+R   +
Sbjct: 126 DVYVPGCPPTAEALLYGIIQLQNKIKRTNTI 156


>gi|6007781|gb|AAF01037.1| NADH ubiquinone oxidoreductase PSST subunit [Lupinus luteus]
          Length = 213

 Score =  242 bits (617), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 113/142 (79%), Positives = 123/142 (86%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           F+++ VD L+ WAR GS+  MTFGLACCAVEMM     RYDL+RFG   R SPRQSD MI
Sbjct: 62  FVISKVDDLMNWARRGSIWPMTFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDCMI 121

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP
Sbjct: 122 VAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 181

Query: 158 GCPPTAEALIYGILLLQKKIRR 179
           GCPPTAEAL+YG+L LQKKI R
Sbjct: 182 GCPPTAEALLYGLLQLQKKINR 203


>gi|225429464|ref|XP_002277483.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 209

 Score =  241 bits (616), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 112/142 (78%), Positives = 123/142 (86%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           F+++ VD L+ WAR GS+  MTFGLACCAVEMM     RYDL+RFG   R SPRQSD MI
Sbjct: 58  FVISKVDDLLNWARRGSIWPMTFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDCMI 117

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGTLTNKMA ALR+VYDQMPEPR+V+SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP
Sbjct: 118 VAGTLTNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 177

Query: 158 GCPPTAEALIYGILLLQKKIRR 179
           GCPPTAEAL+YG+L LQKKI R
Sbjct: 178 GCPPTAEALLYGLLQLQKKINR 199


>gi|242058541|ref|XP_002458416.1| hypothetical protein SORBIDRAFT_03g033090 [Sorghum bicolor]
 gi|241930391|gb|EES03536.1| hypothetical protein SORBIDRAFT_03g033090 [Sorghum bicolor]
          Length = 200

 Score =  241 bits (616), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 114/142 (80%), Positives = 123/142 (86%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           F+V+ VD L+ WAR GS+  MTFGLACCAVEMM A   RYD +RFG   R SPRQSD MI
Sbjct: 49  FVVSKVDDLMNWARKGSIWPMTFGLACCAVEMMHAGASRYDFDRFGVIFRPSPRQSDCMI 108

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP
Sbjct: 109 VAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 168

Query: 158 GCPPTAEALIYGILLLQKKIRR 179
           GCPPTAEAL+YG+L LQKKI R
Sbjct: 169 GCPPTAEALLYGVLQLQKKINR 190


>gi|171058186|ref|YP_001790535.1| NADH dehydrogenase subunit B [Leptothrix cholodnii SP-6]
 gi|218527994|sp|B1Y828|NUOB_LEPCP RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|170775631|gb|ACB33770.1| NADH-quinone oxidoreductase, B subunit [Leptothrix cholodnii SP-6]
          Length = 158

 Score =  241 bits (616), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 112/151 (74%), Positives = 128/151 (84%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           +  +GF+ TSVD L+ W++TGSL  MTFGLACCAVEMM A   RYD++RFG   R SPRQ
Sbjct: 6   VLKEGFVTTSVDTLINWSKTGSLWPMTFGLACCAVEMMHAGASRYDIDRFGMLFRPSPRQ 65

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           SD+MIVAGTL NKMA ALR+VYDQM EPR+V+SMGSCANGGGYYHYSYSVVRGCDR+VPV
Sbjct: 66  SDLMIVAGTLCNKMAPALRKVYDQMAEPRWVLSMGSCANGGGYYHYSYSVVRGCDRVVPV 125

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           D+YVPGCPPTAEAL+YGIL LQ KIRR   +
Sbjct: 126 DVYVPGCPPTAEALLYGILQLQAKIRRENTI 156


>gi|147818797|emb|CAN67285.1| hypothetical protein VITISV_021597 [Vitis vinifera]
          Length = 209

 Score =  241 bits (616), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 112/142 (78%), Positives = 123/142 (86%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           F+++ VD L+ WAR GS+  MTFGLACCAVEMM     RYDL+RFG   R SPRQSD MI
Sbjct: 58  FVISKVDDLLNWARRGSIWPMTFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDCMI 117

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGTLTNKMA ALR+VYDQMPEPR+V+SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP
Sbjct: 118 VAGTLTNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 177

Query: 158 GCPPTAEALIYGILLLQKKIRR 179
           GCPPTAEAL+YG+L LQKKI R
Sbjct: 178 GCPPTAEALLYGLLQLQKKINR 199


>gi|217970157|ref|YP_002355391.1| NADH dehydrogenase subunit B [Thauera sp. MZ1T]
 gi|217507484|gb|ACK54495.1| NADH-quinone oxidoreductase, B subunit [Thauera sp. MZ1T]
          Length = 158

 Score =  241 bits (616), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 113/151 (74%), Positives = 127/151 (84%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           +  +GF+ TS+D ++ W RTGSL  MTFGLACCAVEM+ A   RYDL+RFG   R SPRQ
Sbjct: 6   VFREGFVTTSLDAVINWTRTGSLWPMTFGLACCAVEMIHAGCSRYDLDRFGVVFRPSPRQ 65

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           SD+MIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPV
Sbjct: 66  SDLMIVAGTLCNKMAPALRKVYDQMSEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPV 125

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           D+YVPGCPPTAEALIYGIL LQ KI+R   +
Sbjct: 126 DVYVPGCPPTAEALIYGILQLQNKIKRTNTI 156


>gi|113170492|ref|YP_717283.1| ndhK [Ostreococcus tauri]
 gi|112806899|emb|CAL36405.1| unnamed protein product [Ostreococcus tauri]
          Length = 166

 Score =  241 bits (616), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 113/142 (79%), Positives = 124/142 (87%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           ++++ VD L+ WAR GSL  MTFGLACCAVEMM     RYDL+RFG   R SPRQSDVMI
Sbjct: 15  YIISKVDGLINWARQGSLWPMTFGLACCAVEMMHTGAARYDLDRFGMIFRPSPRQSDVMI 74

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP
Sbjct: 75  VAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 134

Query: 158 GCPPTAEALIYGILLLQKKIRR 179
           GCPPTAEAL+YG+L LQKKI +
Sbjct: 135 GCPPTAEALLYGLLQLQKKISQ 156


>gi|195429519|ref|XP_002062806.1| GK19502 [Drosophila willistoni]
 gi|194158891|gb|EDW73792.1| GK19502 [Drosophila willistoni]
          Length = 213

 Score =  241 bits (616), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 111/151 (73%), Positives = 129/151 (85%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
           T   + V  +D L+ W R GSL  MTFGLACCAVEMM  + PRYD++RFG   RASPRQ+
Sbjct: 58  TWGEWTVARLDDLINWGRKGSLWPMTFGLACCAVEMMHIAAPRYDMDRFGVVFRASPRQT 117

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD 153
           DV+IVAGTLTNKMA ALR++YDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRI+PVD
Sbjct: 118 DVIIVAGTLTNKMAPALRKIYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIIPVD 177

Query: 154 IYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           IYVPGCPPTAEAL+YGIL LQKK++R+  ++
Sbjct: 178 IYVPGCPPTAEALMYGILQLQKKVKRMKTLQ 208


>gi|163855988|ref|YP_001630286.1| NADH dehydrogenase subunit B [Bordetella petrii DSM 12804]
 gi|163259716|emb|CAP42017.1| NADH-ubiquinone oxidoreductase, 20 kDa subunit, chain B [Bordetella
           petrii]
          Length = 178

 Score =  241 bits (615), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 110/151 (72%), Positives = 127/151 (84%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           I  +GF+ TS D+ + WA+TGS+  MTFGLACCAVEMM A   RYDL++FG   R SPRQ
Sbjct: 26  ILKQGFITTSADKFLNWAKTGSMWPMTFGLACCAVEMMHAGAARYDLDQFGIIFRPSPRQ 85

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           SD+MIVAGTL NKMA ALR+VYDQMPEPR+V+SMGSCANGGGYYHYSYSVVRGCDRIVPV
Sbjct: 86  SDLMIVAGTLCNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIVPV 145

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           D+YVPGCPPTAEAL+YG+L +Q KIR    +
Sbjct: 146 DVYVPGCPPTAEALVYGLLQMQNKIRLTNTI 176


>gi|226372608|gb|ACO51929.1| NADH dehydrogenase iron-sulfur protein 7, mitochondrial precursor
           [Rana catesbeiana]
          Length = 217

 Score =  241 bits (615), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 123/172 (71%), Positives = 138/172 (80%), Gaps = 3/172 (1%)

Query: 4   TTVNQKIISGQSSCSLEKVDADFSRISSEITHKG-FLVTSVDQLVTWARTGSLMWMTFGL 62
           T  N+  IS  +S   +K  A  +  SS  + KG F+VT +D LV+WAR  SL  MTFGL
Sbjct: 33  TADNENSIS--ASLVRQKSGAVPATKSSVPSGKGEFIVTKLDDLVSWARRSSLWPMTFGL 90

Query: 63  ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122
           ACCAVEMM  + PRYD++RFG   RASPRQ+DVMIVAGTLTNKMA ALR+VYDQMPEPRY
Sbjct: 91  ACCAVEMMHMAAPRYDMDRFGVVFRASPRQADVMIVAGTLTNKMAPALRKVYDQMPEPRY 150

Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQ 174
           V+SMGSCANGGGYYHYSYSVVRGCD IVPVDIYVPGCPPTAEAL+YGIL LQ
Sbjct: 151 VVSMGSCANGGGYYHYSYSVVRGCDGIVPVDIYVPGCPPTAEALLYGILQLQ 202


>gi|121593378|ref|YP_985274.1| NADH dehydrogenase subunit B [Acidovorax sp. JS42]
 gi|222110087|ref|YP_002552351.1| NADH dehydrogenase subunit b [Acidovorax ebreus TPSY]
 gi|218527972|sp|A1W4M3|NUOB_ACISJ RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|238065124|sp|B9MEL5|NUOB_DIAST RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|120605458|gb|ABM41198.1| NADH dehydrogenase subunit B [Acidovorax sp. JS42]
 gi|221729531|gb|ACM32351.1| NADH-quinone oxidoreductase, B subunit [Acidovorax ebreus TPSY]
          Length = 159

 Score =  241 bits (615), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 116/152 (76%), Positives = 129/152 (84%), Gaps = 1/152 (0%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPR 91
           +  +GF+ TS D +V WA+TGSL  MTFGLACCAVEMM A+  RYDL RFG    RASPR
Sbjct: 5   VMKEGFITTSYDSVVNWAKTGSLWPMTFGLACCAVEMMHAAAARYDLGRFGAEVFRASPR 64

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
           QSD+MIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVP
Sbjct: 65  QSDLMIVAGTLCNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVP 124

Query: 152 VDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           VD+YVPGCPPTAEALIYGI+ LQ+KIRR   +
Sbjct: 125 VDVYVPGCPPTAEALIYGIIQLQQKIRRTHTI 156


>gi|112434037|gb|ABI18363.1| NADH-quinone oxidoreductase chain B [Ehrlichia ruminantium]
          Length = 171

 Score =  241 bits (615), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 114/152 (75%), Positives = 128/152 (84%), Gaps = 4/152 (2%)

Query: 34  THKGFLVTSVDQLVT----WARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS 89
            H+GF+VT +  L++    WAR+ SL  MTFGLACCAVEMM  +  +YDL+R+G   RAS
Sbjct: 18  NHRGFMVTKLSDLMSYVSSWARSNSLWPMTFGLACCAVEMMHTAASKYDLDRYGIMFRAS 77

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQ+DVMIVAGTLTNKMA ALR+VYDQM EPRYVISMGSCANGGGYYHYSYSVVRGCDRI
Sbjct: 78  PRQADVMIVAGTLTNKMAPALRKVYDQMTEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 137

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
           VPVDIYVPGCPPTAEAL+YGIL LQ+KI R  
Sbjct: 138 VPVDIYVPGCPPTAEALLYGILCLQQKINRTA 169


>gi|57239036|ref|YP_180172.1| NADH dehydrogenase subunit B [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58578978|ref|YP_197190.1| NADH dehydrogenase subunit B [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58617036|ref|YP_196235.1| NADH dehydrogenase subunit B [Ehrlichia ruminantium str. Gardel]
 gi|75432798|sp|Q5FHF7|NUOB_EHRRG RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|81557325|sp|Q5HBM2|NUOB_EHRRW RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|57161115|emb|CAH58026.1| NADH-quinone oxidoreductase chain B [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58416648|emb|CAI27761.1| NADH-ubiquinone oxidoreductase chain B [Ehrlichia ruminantium str.
           Gardel]
 gi|58417604|emb|CAI26808.1| NADH-ubiquinone oxidoreductase chain B [Ehrlichia ruminantium str.
           Welgevonden]
 gi|112434039|gb|ABI18364.1| NADH-quinone oxidoreductase chain B [Ehrlichia ruminantium]
 gi|112434041|gb|ABI18365.1| NADH-quinone oxidoreductase chain B [Ehrlichia ruminantium]
 gi|112434043|gb|ABI18366.1| NADH-quinone oxidoreductase chain B [Ehrlichia ruminantium]
 gi|112434045|gb|ABI18367.1| NADH-quinone oxidoreductase chain B [Ehrlichia ruminantium]
 gi|112434047|gb|ABI18368.1| NADH-quinone oxidoreductase chain B [Ehrlichia ruminantium]
 gi|112434049|gb|ABI18369.1| NADH-quinone oxidoreductase chain B [Ehrlichia ruminantium]
 gi|112434051|gb|ABI18370.1| NADH-quinone oxidoreductase chain B [Ehrlichia ruminantium]
 gi|112434053|gb|ABI18371.1| NADH-quinone oxidoreductase chain B [Ehrlichia ruminantium]
 gi|112434055|gb|ABI18372.1| NADH-quinone oxidoreductase chain B [Ehrlichia ruminantium]
 gi|112434057|gb|ABI18373.1| NADH-quinone oxidoreductase chain B [Ehrlichia ruminantium]
          Length = 172

 Score =  241 bits (615), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 114/152 (75%), Positives = 128/152 (84%), Gaps = 4/152 (2%)

Query: 34  THKGFLVTSVDQLVT----WARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS 89
            H+GF+VT +  L++    WAR+ SL  MTFGLACCAVEMM  +  +YDL+R+G   RAS
Sbjct: 18  NHRGFMVTKLSDLMSYVSSWARSNSLWPMTFGLACCAVEMMHTAASKYDLDRYGIMFRAS 77

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQ+DVMIVAGTLTNKMA ALR+VYDQM EPRYVISMGSCANGGGYYHYSYSVVRGCDRI
Sbjct: 78  PRQADVMIVAGTLTNKMAPALRKVYDQMTEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 137

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
           VPVDIYVPGCPPTAEAL+YGIL LQ+KI R  
Sbjct: 138 VPVDIYVPGCPPTAEALLYGILCLQQKINRTA 169


>gi|293603920|ref|ZP_06686335.1| NADH-quinone oxidoreductase subunit B [Achromobacter piechaudii
           ATCC 43553]
 gi|311104659|ref|YP_003977512.1| NADH-quinone oxidoreductase subunit B [Achromobacter xylosoxidans
           A8]
 gi|218528077|sp|A9II02|NUOB_BORPD RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|292817757|gb|EFF76823.1| NADH-quinone oxidoreductase subunit B [Achromobacter piechaudii
           ATCC 43553]
 gi|310759348|gb|ADP14797.1| NADH-quinone oxidoreductase, B subunit [Achromobacter xylosoxidans
           A8]
 gi|317401989|gb|EFV82589.1| NADH-ubiquinone oxidoreductase [Achromobacter xylosoxidans C54]
          Length = 158

 Score =  241 bits (614), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 110/151 (72%), Positives = 127/151 (84%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           I  +GF+ TS D+ + WA+TGS+  MTFGLACCAVEMM A   RYDL++FG   R SPRQ
Sbjct: 6   ILKQGFITTSADKFLNWAKTGSMWPMTFGLACCAVEMMHAGAARYDLDQFGIIFRPSPRQ 65

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           SD+MIVAGTL NKMA ALR+VYDQMPEPR+V+SMGSCANGGGYYHYSYSVVRGCDRIVPV
Sbjct: 66  SDLMIVAGTLCNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIVPV 125

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           D+YVPGCPPTAEAL+YG+L +Q KIR    +
Sbjct: 126 DVYVPGCPPTAEALVYGLLQMQNKIRLTNTI 156


>gi|121706424|ref|XP_001271474.1| NADH-ubiquinone oxidoreductase subunit B, putative [Aspergillus
           clavatus NRRL 1]
 gi|119399622|gb|EAW10048.1| NADH-ubiquinone oxidoreductase subunit B, putative [Aspergillus
           clavatus NRRL 1]
          Length = 225

 Score =  241 bits (614), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 118/177 (66%), Positives = 135/177 (76%), Gaps = 2/177 (1%)

Query: 4   TTVNQKIISGQSSCSLEKVDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFG 61
           T +  +  SGQ      KV  +    S E       +++T++DQ+  WAR  SL  MTFG
Sbjct: 38  TALEHRSQSGQPLTVSGKVRKEVPLPSQEKKEGAMQYVLTTLDQVANWARQSSLWPMTFG 97

Query: 62  LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPR 121
           LACCAVEMM  S PRYD +R G   RASPRQSDVMIVAGTLTNKMA ALR+VYDQMP+PR
Sbjct: 98  LACCAVEMMHLSTPRYDQDRLGIIFRASPRQSDVMIVAGTLTNKMAPALRQVYDQMPDPR 157

Query: 122 YVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           +VISMGSCANGGGYYHYSYSVVRGCDRIVPVD+YVPGCPPT+EAL+YGI  LQKK+R
Sbjct: 158 WVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTSEALMYGIFQLQKKMR 214


>gi|297538955|ref|YP_003674724.1| NADH-quinone oxidoreductase subunit B [Methylotenera sp. 301]
 gi|297258302|gb|ADI30147.1| NADH-quinone oxidoreductase, B subunit [Methylotenera sp. 301]
          Length = 158

 Score =  241 bits (614), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 111/151 (73%), Positives = 127/151 (84%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           I  KGF+ T++D ++ + RTGS+  MTFGLACCAVEMM A   RYDL+RFG   R SPRQ
Sbjct: 6   ILEKGFVTTTLDTVINYTRTGSMWPMTFGLACCAVEMMHAGASRYDLDRFGIVFRGSPRQ 65

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           SDVMIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSY+VVRGCDRIVPV
Sbjct: 66  SDVMIVAGTLVNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYAVVRGCDRIVPV 125

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           D+YVPGCPPTAEAL+YGI+ LQ KI+R   +
Sbjct: 126 DVYVPGCPPTAEALLYGIIQLQNKIKRTNTI 156


>gi|91789115|ref|YP_550067.1| NADH dehydrogenase subunit B [Polaromonas sp. JS666]
 gi|123164659|sp|Q127X3|NUOB_POLSJ RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|91698340|gb|ABE45169.1| NADH dehydrogenase subunit B [Polaromonas sp. JS666]
          Length = 159

 Score =  241 bits (614), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 111/151 (73%), Positives = 128/151 (84%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           + ++GF+ TS D +V WA+TGSL  MTFGLACCAVEMM A   RYD++RFG   R SPRQ
Sbjct: 6   VFNEGFMTTSYDSVVNWAKTGSLWPMTFGLACCAVEMMHAGAARYDMDRFGMLFRPSPRQ 65

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           SD+MIVAGTL NKM  ALR+VYDQM EPR+V+SMGSCANGGGYYHYSYSVVRGCDRIVPV
Sbjct: 66  SDLMIVAGTLCNKMGPALRKVYDQMSEPRWVLSMGSCANGGGYYHYSYSVVRGCDRIVPV 125

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           D+YVPGCPPTAEAL+YGI+ LQ+KIRR   +
Sbjct: 126 DVYVPGCPPTAEALLYGIIQLQQKIRRTNTI 156


>gi|326489346|dbj|BAK01656.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326511367|dbj|BAJ87697.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 201

 Score =  241 bits (614), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 114/142 (80%), Positives = 123/142 (86%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           F+V+ VD L+ WAR GS+  MTFGLACCAVEMM A   RYD +RFG   R SPRQSD MI
Sbjct: 50  FVVSKVDDLMNWARRGSIWPMTFGLACCAVEMMHAGAARYDFDRFGVIFRPSPRQSDCMI 109

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP
Sbjct: 110 VAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 169

Query: 158 GCPPTAEALIYGILLLQKKIRR 179
           GCPPTAEAL+YG+L LQKKI R
Sbjct: 170 GCPPTAEALLYGVLQLQKKINR 191


>gi|253998384|ref|YP_003050447.1| NADH dehydrogenase subunit B [Methylovorus sp. SIP3-4]
 gi|313200460|ref|YP_004039118.1| NADH-quinone oxidoreductase subunit B [Methylovorus sp. MP688]
 gi|253985063|gb|ACT49920.1| NADH-quinone oxidoreductase, B subunit [Methylovorus sp. SIP3-4]
 gi|312439776|gb|ADQ83882.1| NADH-quinone oxidoreductase, B subunit [Methylovorus sp. MP688]
          Length = 158

 Score =  241 bits (614), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 111/151 (73%), Positives = 127/151 (84%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           +  KGF+ T++D ++ + RTGSL  MTFGLACCAVEMM A   RYDL+RFG   R SPRQ
Sbjct: 6   VLEKGFVTTTLDTVINYTRTGSLWPMTFGLACCAVEMMHAGASRYDLDRFGIVFRPSPRQ 65

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           SDVMIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSY+VVRGCDRIVPV
Sbjct: 66  SDVMIVAGTLVNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYAVVRGCDRIVPV 125

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           D+YVPGCPPTAEAL+YGI+ LQ KI+R   +
Sbjct: 126 DVYVPGCPPTAEALLYGIIQLQNKIKRTNTI 156


>gi|9652190|gb|AAF91434.1| NADH-ubiquinone oxidoreductase subunit PSST [Lupinus luteus]
          Length = 192

 Score =  241 bits (614), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 113/142 (79%), Positives = 123/142 (86%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           F+++ VD L+ WAR GS+  MTFGLACCAVEMM     RYDL+RFG   R SPRQSD MI
Sbjct: 41  FVISKVDDLMNWARRGSIWPMTFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDCMI 100

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP
Sbjct: 101 VAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 160

Query: 158 GCPPTAEALIYGILLLQKKIRR 179
           GCPPTAEAL+YG+L LQKKI R
Sbjct: 161 GCPPTAEALLYGLLQLQKKINR 182


>gi|91776412|ref|YP_546168.1| NADH-quinone oxidoreductase, B subunit [Methylobacillus flagellatus
           KT]
 gi|123380391|sp|Q1GZL0|NUOB_METFK RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|91710399|gb|ABE50327.1| NADH dehydrogenase subunit B [Methylobacillus flagellatus KT]
          Length = 158

 Score =  241 bits (614), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 111/151 (73%), Positives = 127/151 (84%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           +  KGF+ T++D ++ + RTGSL  MTFGLACCAVEMM A   RYDL+RFG   R SPRQ
Sbjct: 6   VLEKGFVTTTLDTVINYTRTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGIVFRPSPRQ 65

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           SDVMIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSY+VVRGCDRIVPV
Sbjct: 66  SDVMIVAGTLVNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYAVVRGCDRIVPV 125

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           D+YVPGCPPTAEAL+YGI+ LQ KI+R   +
Sbjct: 126 DVYVPGCPPTAEALLYGIIQLQNKIKRTNTI 156


>gi|88658003|ref|YP_507585.1| NADH dehydrogenase subunit B [Ehrlichia chaffeensis str. Arkansas]
 gi|123493072|sp|Q2GG48|NUOB_EHRCR RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|88599460|gb|ABD44929.1| NADH dehydrogenase I, B subunit [Ehrlichia chaffeensis str.
           Arkansas]
          Length = 179

 Score =  241 bits (614), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 114/150 (76%), Positives = 125/150 (83%), Gaps = 4/150 (2%)

Query: 34  THKGFLVTSVDQLVT----WARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS 89
            H+GF+VT    L+     WAR+ SL  MTFGLACCAVEMM  +  RYDL+R+G   RAS
Sbjct: 18  NHQGFMVTQFSDLINYISNWARSNSLWPMTFGLACCAVEMMHTAASRYDLDRYGVMFRAS 77

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQ+DVMIVAGTLTNKMA ALR+VYDQM EPRYVISMGSCANGGGYYHYSYSVVRGCDRI
Sbjct: 78  PRQADVMIVAGTLTNKMAPALRKVYDQMTEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 137

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           VPVDIYVPGCPPTAEAL+YGI  LQ+KI R
Sbjct: 138 VPVDIYVPGCPPTAEALLYGIFCLQQKINR 167


>gi|121604331|ref|YP_981660.1| NADH dehydrogenase subunit B [Polaromonas naphthalenivorans CJ2]
 gi|218528003|sp|A1VM61|NUOB_POLNA RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|120593300|gb|ABM36739.1| NADH dehydrogenase subunit B [Polaromonas naphthalenivorans CJ2]
          Length = 159

 Score =  241 bits (614), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 112/151 (74%), Positives = 127/151 (84%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           +  +GF+ TS D +V WA+TGSL  MTFGLACCAVEMM A   RYD++RFG   R SPRQ
Sbjct: 6   VFKEGFVTTSYDSVVNWAKTGSLWPMTFGLACCAVEMMHAGAARYDIDRFGMLFRPSPRQ 65

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           SD+MIVAGTL NKM  ALR+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPV
Sbjct: 66  SDLMIVAGTLCNKMGPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPV 125

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           D+YVPGCPPTAEAL+YGI+ LQ+KIRR   +
Sbjct: 126 DVYVPGCPPTAEALLYGIIQLQQKIRRTNTI 156


>gi|253996972|ref|YP_003049036.1| NADH dehydrogenase subunit B [Methylotenera mobilis JLW8]
 gi|253983651|gb|ACT48509.1| NADH-quinone oxidoreductase, B subunit [Methylotenera mobilis JLW8]
          Length = 158

 Score =  241 bits (614), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 111/151 (73%), Positives = 127/151 (84%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           +  KGF+ T++D ++ + RTGSL  MTFGLACCAVEMM A   RYDL+RFG   R SPRQ
Sbjct: 6   VLEKGFVTTTLDTVINYTRTGSLWPMTFGLACCAVEMMHAGASRYDLDRFGIVFRPSPRQ 65

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           SDVMIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSY+VVRGCDRIVPV
Sbjct: 66  SDVMIVAGTLVNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYAVVRGCDRIVPV 125

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           D+YVPGCPPTAEAL+YGI+ LQ KI+R   +
Sbjct: 126 DVYVPGCPPTAEALLYGIIQLQNKIKRTNTI 156


>gi|156048917|ref|XP_001590425.1| NADH-ubiquinone oxidoreductase [Sclerotinia sclerotiorum 1980]
 gi|154692564|gb|EDN92302.1| NADH-ubiquinone oxidoreductase [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 235

 Score =  241 bits (614), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 110/141 (78%), Positives = 123/141 (87%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           + +T++DQ+  WAR GSL  MTFGLACCAVEMM  S PRYD +R G   RASPRQSDVMI
Sbjct: 84  YALTTLDQIANWARQGSLWPMTFGLACCAVEMMHLSTPRYDQDRLGIIFRASPRQSDVMI 143

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGTLTNKMA ALR+VYDQMP+PR+V+SMGSCANGGGYYHYSYSV RGCDRIVPVDIYVP
Sbjct: 144 VAGTLTNKMAPALRQVYDQMPDPRWVVSMGSCANGGGYYHYSYSVTRGCDRIVPVDIYVP 203

Query: 158 GCPPTAEALIYGILLLQKKIR 178
           GCPPT+EAL+YGI  LQKK+R
Sbjct: 204 GCPPTSEALMYGIFQLQKKMR 224


>gi|217075608|gb|ACJ86164.1| unknown [Medicago truncatula]
          Length = 198

 Score =  240 bits (613), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 111/140 (79%), Positives = 123/140 (87%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           ++++ VD L+ WARTGS+  MTFGLACCAVEMM     RYDL+RFG   R SPRQSD MI
Sbjct: 59  YVISKVDNLMNWARTGSIWPMTFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDCMI 118

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGTLTNKMA ALR+VYDQMPEPR+V+SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP
Sbjct: 119 VAGTLTNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 178

Query: 158 GCPPTAEALIYGILLLQKKI 177
           GCPPTAEAL+YG+L LQKKI
Sbjct: 179 GCPPTAEALLYGLLQLQKKI 198


>gi|302879341|ref|YP_003847905.1| NADH-quinone oxidoreductase, B subunit [Gallionella
           capsiferriformans ES-2]
 gi|302582130|gb|ADL56141.1| NADH-quinone oxidoreductase, B subunit [Gallionella
           capsiferriformans ES-2]
          Length = 160

 Score =  240 bits (613), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 113/151 (74%), Positives = 127/151 (84%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           I  KG + T++D ++ + RTGSL  MTFGLACCAVEMMQA   RYDL+RFG   R SPRQ
Sbjct: 6   ILEKGVVTTTLDTIINYTRTGSLWPMTFGLACCAVEMMQAGASRYDLDRFGIVFRPSPRQ 65

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           SDVMIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPV
Sbjct: 66  SDVMIVAGTLCNKMAPALRKVYDQMSEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPV 125

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           DIYVPGCPPTAEAL+YG++ LQ KI+R   +
Sbjct: 126 DIYVPGCPPTAEALLYGLIQLQNKIKRTNTI 156


>gi|327301805|ref|XP_003235595.1| NADH:ubiquinone oxidoreductase 19.3kD subunit [Trichophyton rubrum
           CBS 118892]
 gi|326462947|gb|EGD88400.1| NADH:ubiquinone oxidoreductase 19.3kD subunit [Trichophyton rubrum
           CBS 118892]
          Length = 227

 Score =  240 bits (613), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 111/141 (78%), Positives = 123/141 (87%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           + +T++DQ+  WAR GSL  MTFGLACCAVEMM  S PRYD +R G   RASPRQSDVMI
Sbjct: 76  YALTTLDQVANWARQGSLWPMTFGLACCAVEMMHLSTPRYDQDRLGIIFRASPRQSDVMI 135

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSV RGCDRIVPVDIYVP
Sbjct: 136 VAGTLTNKMAPALRQVYDQMPEPRWVISMGSCANGGGYYHYSYSVTRGCDRIVPVDIYVP 195

Query: 158 GCPPTAEALIYGILLLQKKIR 178
           GCPPT+EAL+YGI  LQ+K+R
Sbjct: 196 GCPPTSEALMYGIFQLQRKMR 216


>gi|42520927|ref|NP_966842.1| NADH dehydrogenase subunit B [Wolbachia endosymbiont of Drosophila
           melanogaster]
 gi|58698296|ref|ZP_00373213.1| NADH-quinone oxidoreductase, B subunit [Wolbachia endosymbiont of
           Drosophila ananassae]
 gi|225630974|ref|YP_002727765.1| NADH dehydrogenase I, B subunit [Wolbachia sp. wRi]
 gi|225631316|ref|ZP_03787991.1| NADH dehydrogenase I, B subunit [Wolbachia endosymbiont of
           Muscidifurax uniraptor]
 gi|81652220|sp|Q73G42|NUOB_WOLPM RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|254767799|sp|C0R4Y2|NUOB_WOLWR RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|42410668|gb|AAS14776.1| NADH dehydrogenase I, B subunit [Wolbachia endosymbiont of
           Drosophila melanogaster]
 gi|58535169|gb|EAL59251.1| NADH-quinone oxidoreductase, B subunit [Wolbachia endosymbiont of
           Drosophila ananassae]
 gi|225590991|gb|EEH12198.1| NADH dehydrogenase I, B subunit [Wolbachia endosymbiont of
           Muscidifurax uniraptor]
 gi|225592955|gb|ACN95974.1| NADH dehydrogenase I, B subunit [Wolbachia sp. wRi]
          Length = 168

 Score =  240 bits (613), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 117/164 (71%), Positives = 133/164 (81%), Gaps = 8/164 (4%)

Query: 23  DADFSRISSEITHKGFLVTS----VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78
           + D+ R   E    GFLVT      D ++ WAR+GSL  MTFGLACCAVEMM  +  RYD
Sbjct: 8   NDDWGRYKKE----GFLVTKFGDLTDYVMNWARSGSLWPMTFGLACCAVEMMHTASSRYD 63

Query: 79  LERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY 138
           L+R+G   RASPRQSDVMIVAGTLTNKMA+ALR+VYDQM +P+YVISMGSCANGGGYYHY
Sbjct: 64  LDRYGIMFRASPRQSDVMIVAGTLTNKMAAALRKVYDQMADPKYVISMGSCANGGGYYHY 123

Query: 139 SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
           SYSVVRGCDRIVPVD+YVPGCPPTAEAL+YG+L LQ KI+R  N
Sbjct: 124 SYSVVRGCDRIVPVDVYVPGCPPTAEALLYGMLCLQNKIKRTRN 167


>gi|18461218|dbj|BAB84415.1| putative NADH2 dehydrogenase (ubiquinone) chain PSST precursor
           [Oryza sativa Japonica Group]
 gi|125527525|gb|EAY75639.1| hypothetical protein OsI_03544 [Oryza sativa Indica Group]
 gi|222619176|gb|EEE55308.1| hypothetical protein OsJ_03280 [Oryza sativa Japonica Group]
          Length = 199

 Score =  240 bits (613), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 113/142 (79%), Positives = 123/142 (86%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           F+++ VD L+ WAR GS+  MTFGLACCAVEMM A   RYD +RFG   R SPRQSD MI
Sbjct: 48  FVISKVDDLMNWARRGSIWPMTFGLACCAVEMMHAGASRYDFDRFGVIFRPSPRQSDCMI 107

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP
Sbjct: 108 VAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 167

Query: 158 GCPPTAEALIYGILLLQKKIRR 179
           GCPPTAEAL+YG+L LQKKI R
Sbjct: 168 GCPPTAEALLYGVLQLQKKINR 189


>gi|296828066|ref|XP_002851269.1| NADH dehydrogenase iron-sulfur protein 7 [Arthroderma otae CBS
           113480]
 gi|238838823|gb|EEQ28485.1| NADH dehydrogenase iron-sulfur protein 7 [Arthroderma otae CBS
           113480]
          Length = 227

 Score =  240 bits (612), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 111/141 (78%), Positives = 123/141 (87%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           + +T++DQ+  WAR GSL  MTFGLACCAVEMM  S PRYD +R G   RASPRQSDVMI
Sbjct: 76  YALTTLDQVANWARQGSLWPMTFGLACCAVEMMHLSTPRYDQDRLGIIFRASPRQSDVMI 135

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSV RGCDRIVPVDIYVP
Sbjct: 136 VAGTLTNKMAPALRQVYDQMPEPRWVISMGSCANGGGYYHYSYSVTRGCDRIVPVDIYVP 195

Query: 158 GCPPTAEALIYGILLLQKKIR 178
           GCPPT+EAL+YGI  LQ+K+R
Sbjct: 196 GCPPTSEALMYGIFQLQRKMR 216


>gi|257095318|ref|YP_003168959.1| NADH dehydrogenase subunit B [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
 gi|257047842|gb|ACV37030.1| NADH-quinone oxidoreductase, B subunit [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 158

 Score =  240 bits (612), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 111/151 (73%), Positives = 128/151 (84%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           I  +GF+ T+ D+L+ + RTGSL  M+FGLACCA+EM+ A   RYDL+RFG   R SPRQ
Sbjct: 6   ILQEGFVTTTADKLINYVRTGSLWPMSFGLACCAIEMIHAGCSRYDLDRFGIVFRPSPRQ 65

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           SDVM+VAGTLTNKMA A+R+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPV
Sbjct: 66  SDVMVVAGTLTNKMAPAMRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPV 125

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           DIYVPGCPPTAEALIYG++ LQ KIRR   +
Sbjct: 126 DIYVPGCPPTAEALIYGLIQLQNKIRRTNTI 156


>gi|315056963|ref|XP_003177856.1| NADH dehydrogenase iron-sulfur protein 7 [Arthroderma gypseum CBS
           118893]
 gi|311339702|gb|EFQ98904.1| NADH dehydrogenase iron-sulfur protein 7 [Arthroderma gypseum CBS
           118893]
          Length = 227

 Score =  240 bits (612), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 111/141 (78%), Positives = 123/141 (87%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           + +T++DQ+  WAR GSL  MTFGLACCAVEMM  S PRYD +R G   RASPRQSDVMI
Sbjct: 76  YALTTLDQVANWARQGSLWPMTFGLACCAVEMMHLSTPRYDQDRLGIIFRASPRQSDVMI 135

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSV RGCDRIVPVDIYVP
Sbjct: 136 VAGTLTNKMAPALRQVYDQMPEPRWVISMGSCANGGGYYHYSYSVTRGCDRIVPVDIYVP 195

Query: 158 GCPPTAEALIYGILLLQKKIR 178
           GCPPT+EAL+YGI  LQ+K+R
Sbjct: 196 GCPPTSEALMYGIFQLQRKMR 216


>gi|120609951|ref|YP_969629.1| NADH dehydrogenase subunit B [Acidovorax citrulli AAC00-1]
 gi|326316100|ref|YP_004233772.1| NAD(P)H-quinone oxidoreductase subunit K [Acidovorax avenae subsp.
           avenae ATCC 19860]
 gi|218527970|sp|A1TLL7|NUOB_ACIAC RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|120588415|gb|ABM31855.1| NADH dehydrogenase subunit B [Acidovorax citrulli AAC00-1]
 gi|323372936|gb|ADX45205.1| NAD(P)H-quinone oxidoreductase subunit K [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 159

 Score =  240 bits (612), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 115/152 (75%), Positives = 129/152 (84%), Gaps = 1/152 (0%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPR 91
           +  +GF+ TS D +V WA+TGSL  MTFGLACCAVEMM A+  RYD+ RFG    RASPR
Sbjct: 5   VMKEGFITTSYDSVVNWAKTGSLWPMTFGLACCAVEMMHAAAARYDIGRFGAEVFRASPR 64

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
           QSD+MIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVP
Sbjct: 65  QSDLMIVAGTLCNKMAPALRKVYDQMSEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVP 124

Query: 152 VDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           VD+YVPGCPPTAEALIYGI+ LQ+KIRR   +
Sbjct: 125 VDVYVPGCPPTAEALIYGIIQLQQKIRRTHTI 156


>gi|328854118|gb|EGG03252.1| hypothetical protein MELLADRAFT_78587 [Melampsora larici-populina
           98AG31]
          Length = 258

 Score =  240 bits (612), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 110/155 (70%), Positives = 132/155 (85%), Gaps = 2/155 (1%)

Query: 27  SRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF 84
           +++S E    G  ++++++D++V W R GS+  MTFGLACCAVEMM  +  RYD +R G 
Sbjct: 94  NQLSLETPRNGAEYVLSTIDKIVNWGRQGSMWPMTFGLACCAVEMMHMAAARYDQDRLGV 153

Query: 85  APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR 144
             RASPRQSD+MIVAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVR
Sbjct: 154 VFRASPRQSDIMIVAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVR 213

Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           GCDRIVPVD+YVPGCPPTAEAL+YG+L LQ+K+RR
Sbjct: 214 GCDRIVPVDLYVPGCPPTAEALLYGMLQLQRKMRR 248


>gi|259482901|tpe|CBF77819.1| TPA: NADH-ubiquinone oxidoreductase subunit B, putative
           (AFU_orthologue; AFUA_4G05860) [Aspergillus nidulans
           FGSC A4]
          Length = 228

 Score =  240 bits (612), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 117/177 (66%), Positives = 138/177 (77%), Gaps = 2/177 (1%)

Query: 4   TTVNQKIISGQSSCSLEKVDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFG 61
           T + ++  +GQS  +  +V  +    S E       +++T++DQ+  WAR  SL  MTFG
Sbjct: 41  TALERQGNAGQSLTASGQVRREVPLPSQEKKEGAMQYVLTTLDQVANWARQSSLWPMTFG 100

Query: 62  LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPR 121
           LACCAVEMM  S PRYD +R G   RASPRQSDVMIVAGTLTNKMA ALR+VYDQMP+PR
Sbjct: 101 LACCAVEMMHLSTPRYDQDRLGIIFRASPRQSDVMIVAGTLTNKMAPALRQVYDQMPDPR 160

Query: 122 YVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           +VISMGSCANGGGYYHYSYSVVRGCDRIVPVD+YVPGCPPT+EAL+YGI  LQKK+R
Sbjct: 161 WVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTSEALMYGIFQLQKKMR 217


>gi|226292374|gb|EEH47794.1| NADH-ubiquinone oxidoreductase 20 kDa subunit [Paracoccidioides
           brasiliensis Pb18]
          Length = 228

 Score =  240 bits (612), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 111/143 (77%), Positives = 123/143 (86%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           F +T++DQ+  WAR  SL  MTFGLACCAVEMM  S PRYD +R G   RASPRQSDVMI
Sbjct: 77  FALTTLDQVTNWARQSSLWPMTFGLACCAVEMMHLSTPRYDQDRLGIIFRASPRQSDVMI 136

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGTLTNKMA ALR+VYDQMP+PR+VISMGSCANGGGYYHYSYSV RGCDRIVPVDIYVP
Sbjct: 137 VAGTLTNKMAPALRQVYDQMPDPRWVISMGSCANGGGYYHYSYSVTRGCDRIVPVDIYVP 196

Query: 158 GCPPTAEALIYGILLLQKKIRRV 180
           GCPPT+EAL+YGI  LQKK+R+ 
Sbjct: 197 GCPPTSEALMYGIFQLQKKMRQT 219


>gi|187477542|ref|YP_785566.1| NADH dehydrogenase subunit B [Bordetella avium 197N]
 gi|123513819|sp|Q2KV17|NUOB_BORA1 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|115422128|emb|CAJ48652.1| NADH dehydrogenase I chain B [Bordetella avium 197N]
          Length = 158

 Score =  240 bits (612), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 109/151 (72%), Positives = 126/151 (83%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           I  +GF+ TS D+ + WA+TGS+  MTFGLACCAVEMM A   RYDL++FG   R SPRQ
Sbjct: 6   ILKQGFITTSADKFINWAKTGSMWPMTFGLACCAVEMMHAGAARYDLDQFGIIFRPSPRQ 65

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           SD+MIVAGTL NKM  ALR+VYDQMPEPR+V+SMGSCANGGGYYHYSYSVVRGCDRIVPV
Sbjct: 66  SDLMIVAGTLCNKMGPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIVPV 125

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           D+YVPGCPPTAEAL+YG+L +Q KIR    +
Sbjct: 126 DVYVPGCPPTAEALVYGLLQMQNKIRLTNTI 156


>gi|225680692|gb|EEH18976.1| NADH dehydrogenase iron-sulfur protein [Paracoccidioides
           brasiliensis Pb03]
          Length = 228

 Score =  240 bits (612), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 111/143 (77%), Positives = 123/143 (86%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           F +T++DQ+  WAR  SL  MTFGLACCAVEMM  S PRYD +R G   RASPRQSDVMI
Sbjct: 77  FALTTLDQVTNWARQSSLWPMTFGLACCAVEMMHLSTPRYDQDRLGIIFRASPRQSDVMI 136

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGTLTNKMA ALR+VYDQMP+PR+VISMGSCANGGGYYHYSYSV RGCDRIVPVDIYVP
Sbjct: 137 VAGTLTNKMAPALRQVYDQMPDPRWVISMGSCANGGGYYHYSYSVTRGCDRIVPVDIYVP 196

Query: 158 GCPPTAEALIYGILLLQKKIRRV 180
           GCPPT+EAL+YGI  LQKK+R+ 
Sbjct: 197 GCPPTSEALMYGIFQLQKKMRQT 219


>gi|242765651|ref|XP_002341018.1| NADH-ubiquinone oxidoreductase subunit B, putative [Talaromyces
           stipitatus ATCC 10500]
 gi|218724214|gb|EED23631.1| NADH-ubiquinone oxidoreductase subunit B, putative [Talaromyces
           stipitatus ATCC 10500]
          Length = 226

 Score =  240 bits (612), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 111/141 (78%), Positives = 123/141 (87%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           + +T++DQ+  WAR  SL  MTFGLACCAVEMM  S PRYD +R G   RASPRQSDVMI
Sbjct: 75  YALTTLDQIANWARQSSLWPMTFGLACCAVEMMHLSTPRYDQDRLGIIFRASPRQSDVMI 134

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGTLTNKMA ALR+VYDQMP+PR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP
Sbjct: 135 VAGTLTNKMAPALRQVYDQMPDPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 194

Query: 158 GCPPTAEALIYGILLLQKKIR 178
           GCPPT+EAL+YGI  LQKK+R
Sbjct: 195 GCPPTSEALMYGIFQLQKKMR 215


>gi|241763289|ref|ZP_04761346.1| NADH-quinone oxidoreductase, B subunit [Acidovorax delafieldii 2AN]
 gi|241367564|gb|EER61851.1| NADH-quinone oxidoreductase, B subunit [Acidovorax delafieldii 2AN]
          Length = 159

 Score =  240 bits (612), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 114/152 (75%), Positives = 129/152 (84%), Gaps = 1/152 (0%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPR 91
           +  +GF+ TS D +V WA+TGSL  MTFGLACCAVEMM A+  RYD+ RFG    RASPR
Sbjct: 5   VMKEGFITTSYDSVVNWAKTGSLWPMTFGLACCAVEMMHAAAARYDIGRFGAEVFRASPR 64

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
           QSD+MIVAGTL NKMA ALR+VYDQM EPR+V+SMGSCANGGGYYHYSYSVVRGCDRIVP
Sbjct: 65  QSDLMIVAGTLCNKMAPALRKVYDQMSEPRWVLSMGSCANGGGYYHYSYSVVRGCDRIVP 124

Query: 152 VDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           VD+YVPGCPPTAEALIYGI+ LQ+KIRR   +
Sbjct: 125 VDVYVPGCPPTAEALIYGIIQLQQKIRRTNTI 156


>gi|170069760|ref|XP_001869339.1| NADH dehydrogenase iron-sulfur protein 7, mitochondrial [Culex
           quinquefasciatus]
 gi|167865642|gb|EDS29025.1| NADH dehydrogenase iron-sulfur protein 7, mitochondrial [Culex
           quinquefasciatus]
          Length = 212

 Score =  239 bits (611), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 108/147 (73%), Positives = 128/147 (87%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           + V  +D ++ W R GS+  +TFGLACCAVEMM  + PRYD++RFG   RASPRQ+DV+I
Sbjct: 61  WTVARLDDVLNWGRKGSIWPLTFGLACCAVEMMHIAAPRYDMDRFGVVFRASPRQADVII 120

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRI+PVDIYVP
Sbjct: 121 VAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVP 180

Query: 158 GCPPTAEALIYGILLLQKKIRRVGNVK 184
           GCPPTAEAL+YGIL LQKK++R+  ++
Sbjct: 181 GCPPTAEALLYGILQLQKKVKRMKTLQ 207


>gi|68171628|ref|ZP_00544995.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit [Ehrlichia
           chaffeensis str. Sapulpa]
 gi|67998949|gb|EAM85633.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit [Ehrlichia
           chaffeensis str. Sapulpa]
          Length = 182

 Score =  239 bits (611), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 113/150 (75%), Positives = 125/150 (83%), Gaps = 4/150 (2%)

Query: 34  THKGFLVTSVDQLVT----WARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS 89
            H+GF+VT    L+     WAR+ SL  MTFGLACCAVEMM  +  RYDL+R+G   RAS
Sbjct: 18  NHQGFMVTQFSDLINYISNWARSNSLWPMTFGLACCAVEMMHTAASRYDLDRYGVMFRAS 77

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQ+DVMIVAGTLTNKMA ALR+VYDQM EPRYVISMGSCANGGGYYHYSYSVVRGCDRI
Sbjct: 78  PRQADVMIVAGTLTNKMAPALRKVYDQMTEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 137

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           VPVDI+VPGCPPTAEAL+YGI  LQ+KI R
Sbjct: 138 VPVDIFVPGCPPTAEALLYGIFCLQQKINR 167


>gi|295673086|ref|XP_002797089.1| NADH dehydrogenase iron-sulfur protein [Paracoccidioides
           brasiliensis Pb01]
 gi|226282461|gb|EEH38027.1| NADH dehydrogenase iron-sulfur protein [Paracoccidioides
           brasiliensis Pb01]
          Length = 228

 Score =  239 bits (611), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 111/143 (77%), Positives = 122/143 (85%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           F +T++DQ+  WAR  SL  MTFGLACCAVEMM  S PRYD +R G   RASPRQSDVMI
Sbjct: 77  FALTTLDQVTNWARQSSLWPMTFGLACCAVEMMHLSTPRYDQDRLGIIFRASPRQSDVMI 136

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGTLTNKMA ALR+VYDQMP+PR+VISMGSCANGGGYYHYSYSV RGCDRIVPVDIYVP
Sbjct: 137 VAGTLTNKMAPALRQVYDQMPDPRWVISMGSCANGGGYYHYSYSVTRGCDRIVPVDIYVP 196

Query: 158 GCPPTAEALIYGILLLQKKIRRV 180
           GCPPT+EAL+YGI  LQKK+R  
Sbjct: 197 GCPPTSEALMYGIFQLQKKMRHT 219


>gi|312211788|emb|CBX91872.1| hypothetical protein [Leptosphaeria maculans]
          Length = 233

 Score =  239 bits (611), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 111/143 (77%), Positives = 122/143 (85%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           + +T++DQ+  WAR  SL  MTFGLACCAVEMM  S PRYD +R G   RASPRQSDVMI
Sbjct: 82  YALTTLDQVANWARQSSLWPMTFGLACCAVEMMHLSTPRYDQDRLGIIFRASPRQSDVMI 141

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGTLTNKMA ALR+VYDQMP+PR+VISMGSCANGGGYYHYSYSV RGCDRIVPVDIYVP
Sbjct: 142 VAGTLTNKMAPALRQVYDQMPDPRWVISMGSCANGGGYYHYSYSVTRGCDRIVPVDIYVP 201

Query: 158 GCPPTAEALIYGILLLQKKIRRV 180
           GCPPTAEAL+YGI  LQKK+R  
Sbjct: 202 GCPPTAEALMYGIFQLQKKMRHT 224


>gi|195117025|ref|XP_002003051.1| GI24498 [Drosophila mojavensis]
 gi|193913626|gb|EDW12493.1| GI24498 [Drosophila mojavensis]
          Length = 205

 Score =  239 bits (611), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 116/180 (64%), Positives = 138/180 (76%), Gaps = 4/180 (2%)

Query: 7   NQKIISGQSSCSL--EKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLAC 64
            QK +     C +   K  + F R         + VT +D L+ W R GS+  MTFGLAC
Sbjct: 23  KQKTMHNVDKCGMPARKGYSPFGRKQPRWGE--WAVTRLDDLLNWGRKGSVWPMTFGLAC 80

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           CAVEMM  + PRYD++RFG   RASPRQ+D++IVAGTLTNKMA ALR++YDQMPEPR+VI
Sbjct: 81  CAVEMMHIAGPRYDMDRFGVVFRASPRQTDLIIVAGTLTNKMAPALRKIYDQMPEPRWVI 140

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           SMGSCANGGGYYHYSYSVVRGCDRI+PVDIYVPGCPPTAEAL+YGIL LQKKI+R+  ++
Sbjct: 141 SMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALLYGILQLQKKIKRMRTLQ 200


>gi|194763060|ref|XP_001963652.1| GF19983 [Drosophila ananassae]
 gi|190629311|gb|EDV44728.1| GF19983 [Drosophila ananassae]
          Length = 217

 Score =  239 bits (611), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 115/196 (58%), Positives = 144/196 (73%), Gaps = 14/196 (7%)

Query: 3   LTTVNQKIISGQSSCSLEKVDA-DFSRISSEITHKGFL-------------VTSVDQLVT 48
           + T N  + S  +S  +   +    ++ S EI  KG+              +  +D L+ 
Sbjct: 17  IATKNLPLTSALNSIWVRNQNTLTIAKTSEEIPKKGYSPFGNKQASAAEWSLARLDDLLN 76

Query: 49  WARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108
           W R GS+  +TFGLACCAVEMM  + PRYD++R+G   RASPRQ+DV+IVAGTLTNKMA 
Sbjct: 77  WGRKGSIWPLTFGLACCAVEMMHIAAPRYDMDRYGVVFRASPRQADVIIVAGTLTNKMAP 136

Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168
           ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRI+PVDIYVPGCPPTAEAL+Y
Sbjct: 137 ALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALMY 196

Query: 169 GILLLQKKIRRVGNVK 184
           G+L LQKK++R+  ++
Sbjct: 197 GVLQLQKKVKRMKTLQ 212


>gi|149927542|ref|ZP_01915796.1| NADH dehydrogenase subunit B [Limnobacter sp. MED105]
 gi|149823815|gb|EDM83041.1| NADH dehydrogenase subunit B [Limnobacter sp. MED105]
          Length = 158

 Score =  239 bits (611), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 110/151 (72%), Positives = 127/151 (84%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           + ++GF+ T+ D+L+ W RTGSL  MTFGLACCAVEMM A   RYDL+RFG   R SPRQ
Sbjct: 6   VLNEGFITTTADKLINWGRTGSLWPMTFGLACCAVEMMHAGASRYDLDRFGIIFRPSPRQ 65

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           SD+MIVAGTL NKMA ALR+VYDQM EPR+V+SMGSCANGGGYYHYSYSVVRGCDRIVPV
Sbjct: 66  SDLMIVAGTLCNKMAPALRKVYDQMAEPRWVLSMGSCANGGGYYHYSYSVVRGCDRIVPV 125

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           D+YVPGCPPTAEAL+YG+L LQ KI+    +
Sbjct: 126 DVYVPGCPPTAEALMYGLLQLQNKIKTTSTI 156


>gi|34498210|ref|NP_902425.1| NADH dehydrogenase subunit B [Chromobacterium violaceum ATCC 12472]
 gi|81655254|sp|Q7NUE5|NUOB2_CHRVO RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName:
           Full=NADH dehydrogenase I subunit B 2; AltName:
           Full=NDH-1 subunit B 2
 gi|34104063|gb|AAQ60423.1| NADH-ubiquinone oxidoreductase, chain B [Chromobacterium violaceum
           ATCC 12472]
          Length = 171

 Score =  239 bits (611), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 108/150 (72%), Positives = 132/150 (88%)

Query: 30  SSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS 89
           S  +   GFL+T++D L   A++GSL +++FGLACCAVEMM A+  RYD++RFG+ PRA+
Sbjct: 3   SPSLEKDGFLLTTLDGLFGRAQSGSLWYLSFGLACCAVEMMHAAAARYDMDRFGWIPRAT 62

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQ+D+MIVAGTLTNKMA A+R+VYDQM EPRYV+SMGSCANGGGYYHYSY+VVRGCDRI
Sbjct: 63  PRQADLMIVAGTLTNKMAPAMRKVYDQMSEPRYVLSMGSCANGGGYYHYSYAVVRGCDRI 122

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           VPVD+YVPGCPPTAEAL+YG++ LQ KIRR
Sbjct: 123 VPVDVYVPGCPPTAEALLYGLMQLQAKIRR 152


>gi|332528752|ref|ZP_08404729.1| NADH dehydrogenase subunit B [Hylemonella gracilis ATCC 19624]
 gi|332041818|gb|EGI78167.1| NADH dehydrogenase subunit B [Hylemonella gracilis ATCC 19624]
          Length = 159

 Score =  239 bits (611), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 114/152 (75%), Positives = 129/152 (84%), Gaps = 1/152 (0%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPR 91
           +  +GF+ TS D +V WA+TGSL  MTFGLACCAVEMM A+  RYD+ RFG    RASPR
Sbjct: 5   VLKEGFVTTSYDTVVNWAKTGSLWPMTFGLACCAVEMMHAAAARYDIARFGSEVFRASPR 64

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
           QSD+MIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVP
Sbjct: 65  QSDLMIVAGTLCNKMAPALRKVYDQMSEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVP 124

Query: 152 VDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           VD+YVPGCPPTAEALIYGI+ LQ+K+RR   +
Sbjct: 125 VDVYVPGCPPTAEALIYGIIQLQQKVRRTQTI 156


>gi|299751278|ref|XP_002911618.1| NADH-ubiquinone oxidoreductase 20 kDa subunit [Coprinopsis cinerea
           okayama7#130]
 gi|298409301|gb|EFI28124.1| NADH-ubiquinone oxidoreductase 20 kDa subunit [Coprinopsis cinerea
           okayama7#130]
          Length = 223

 Score =  239 bits (611), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 111/172 (64%), Positives = 136/172 (79%)

Query: 8   QKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAV 67
           +   S Q   ++ K  ++   + +      ++++++D++  WAR GS+  MTFGLACCAV
Sbjct: 42  ESATSTQPYTAIAKQGSNQLSLETPQNKAEYVLSTLDKVANWARQGSMWPMTFGLACCAV 101

Query: 68  EMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMG 127
           EMM  +  RYD +R G   RASPRQSD+MIVAGTLTNKMA ALR+VYDQMPEPR+VISMG
Sbjct: 102 EMMHMAAARYDQDRLGVVFRASPRQSDIMIVAGTLTNKMAPALRKVYDQMPEPRWVISMG 161

Query: 128 SCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           SCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG+L LQ+K+RR
Sbjct: 162 SCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGMLQLQRKMRR 213


>gi|254468178|ref|ZP_05081584.1| NADH-quinone oxidoreductase, b subunit [beta proteobacterium KB13]
 gi|207086988|gb|EDZ64271.1| NADH-quinone oxidoreductase, b subunit [beta proteobacterium KB13]
          Length = 158

 Score =  239 bits (611), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 109/151 (72%), Positives = 128/151 (84%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           +  KGF+ T++D L+ + RT S+  MTFGLACCAVEMM A   RYDL+RFG   R SPRQ
Sbjct: 6   LLEKGFITTNLDTLINYTRTNSMWPMTFGLACCAVEMMHAGASRYDLDRFGMVFRPSPRQ 65

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           SD+MIVAGTL NKMA ALR+VYDQMP+P++VISMGSCANGGGYYHYSYSVVRGCDRIVPV
Sbjct: 66  SDLMIVAGTLVNKMAPALRKVYDQMPDPKWVISMGSCANGGGYYHYSYSVVRGCDRIVPV 125

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           D+YVPGCPPTAEAL++G+L LQKKI+R   +
Sbjct: 126 DVYVPGCPPTAEALMFGLLQLQKKIKRTNTI 156


>gi|157117673|ref|XP_001658881.1| NADH-plastoquinone oxidoreductase [Aedes aegypti]
 gi|108875970|gb|EAT40195.1| NADH-plastoquinone oxidoreductase [Aedes aegypti]
          Length = 215

 Score =  239 bits (611), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 108/147 (73%), Positives = 128/147 (87%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           + V  +D ++ W R GS+  +TFGLACCAVEMM  + PRYD++RFG   RASPRQ+DV+I
Sbjct: 64  WTVARLDDVLNWGRKGSIWPLTFGLACCAVEMMHIAAPRYDMDRFGVVFRASPRQADVII 123

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRI+PVDIYVP
Sbjct: 124 VAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVP 183

Query: 158 GCPPTAEALIYGILLLQKKIRRVGNVK 184
           GCPPTAEAL+YGIL LQKK++R+  ++
Sbjct: 184 GCPPTAEALLYGILQLQKKVKRMKTLQ 210


>gi|291231230|ref|XP_002735571.1| PREDICTED: NADH dehydrogenase iron-sulfur protein 7,
           mitochondrial-like [Saccoglossus kowalevskii]
          Length = 220

 Score =  239 bits (611), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 111/142 (78%), Positives = 123/142 (86%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           ++VT +D L  WAR  S+  MTFGLACCAVEMM  + PRYD++RFG   RASPRQSD MI
Sbjct: 69  YVVTGLDHLANWARRSSIWPMTFGLACCAVEMMHMAAPRYDMDRFGIVFRASPRQSDCMI 128

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRG DR+VPVDIYVP
Sbjct: 129 VAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGVDRVVPVDIYVP 188

Query: 158 GCPPTAEALIYGILLLQKKIRR 179
           GCPPTAEAL+YG L LQKKI+R
Sbjct: 189 GCPPTAEALLYGFLQLQKKIKR 210


>gi|66512193|ref|XP_392437.2| PREDICTED: probable NADH dehydrogenase [ubiquinone] iron-sulfur
           protein 7, mitochondrial [Apis mellifera]
          Length = 223

 Score =  239 bits (611), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 110/173 (63%), Positives = 136/173 (78%)

Query: 12  SGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQ 71
           + +SS   +     +S   +      + V  +D ++ W R GS+  +TFGLACCAVEMM 
Sbjct: 46  TSESSLPEKAKKIPYSPFQNTNNLAEYAVARLDDILNWGRKGSIWPLTFGLACCAVEMMH 105

Query: 72  ASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCAN 131
            + PRYD++R+G   RASPRQ+DV+IVAGTLTNKMA ALR++YDQMPEPR+VISMGSCAN
Sbjct: 106 IAAPRYDMDRYGVVFRASPRQADVIIVAGTLTNKMAPALRKIYDQMPEPRWVISMGSCAN 165

Query: 132 GGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           GGGYYHYSYSVVRGCDRI+PVDIYVPGCPPTAEAL+YGIL LQKKI+R+  ++
Sbjct: 166 GGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALMYGILQLQKKIKRMKTLQ 218


>gi|321466001|gb|EFX76999.1| hypothetical protein DAPPUDRAFT_54753 [Daphnia pulex]
          Length = 167

 Score =  239 bits (611), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 109/147 (74%), Positives = 128/147 (87%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           + V  +D L+ W R GSL  +TFGLACCAVEMM  + PRYD++R+G   RASPRQ+DV+I
Sbjct: 16  YAVARLDDLLNWGRKGSLWPLTFGLACCAVEMMHIAAPRYDMDRYGVVFRASPRQADVII 75

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRI+PVDIYVP
Sbjct: 76  VAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVP 135

Query: 158 GCPPTAEALIYGILLLQKKIRRVGNVK 184
           GCPPTAEAL+YGIL LQKK++R+  ++
Sbjct: 136 GCPPTAEALMYGILQLQKKVKRMKTIQ 162


>gi|255943669|ref|XP_002562602.1| Pc20g00390 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211587337|emb|CAP85368.1| Pc20g00390 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 230

 Score =  239 bits (611), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 110/141 (78%), Positives = 123/141 (87%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           + +T++DQ+  WAR  SL  MTFGLACCAVEMM  S PRYD +R G   RASPRQSDVMI
Sbjct: 79  YALTTLDQIANWARQSSLWPMTFGLACCAVEMMHLSTPRYDQDRLGIIFRASPRQSDVMI 138

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGTLTNKMA ALR+VYDQMP+PR+VISMGSCANGGGYYHYSYSVVRGCDR+VPVDIYVP
Sbjct: 139 VAGTLTNKMAPALRQVYDQMPDPRWVISMGSCANGGGYYHYSYSVVRGCDRVVPVDIYVP 198

Query: 158 GCPPTAEALIYGILLLQKKIR 178
           GCPPT+EAL+YGI  LQKK+R
Sbjct: 199 GCPPTSEALMYGIFQLQKKMR 219


>gi|56478177|ref|YP_159766.1| NADH dehydrogenase subunit B [Aromatoleum aromaticum EbN1]
 gi|81356986|sp|Q5P1E9|NUOB_AZOSE RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|56314220|emb|CAI08865.1| NADH dehydrogenase I, chain B [Aromatoleum aromaticum EbN1]
          Length = 158

 Score =  239 bits (611), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 111/151 (73%), Positives = 127/151 (84%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           +  +GF+ TS+D ++ W RTGSL  MTFGLACCAVEM+ A   RYDL+RFG   R SPRQ
Sbjct: 6   VFREGFVTTSLDAVINWTRTGSLWPMTFGLACCAVEMIHAGCARYDLDRFGVVFRPSPRQ 65

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           SD+MIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPV
Sbjct: 66  SDLMIVAGTLCNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPV 125

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           D+YVPGCPPTAEAL+YGI+ LQ KI+R   +
Sbjct: 126 DVYVPGCPPTAEALLYGIIQLQNKIKRTNTI 156


>gi|320586540|gb|EFW99210.1| NADH-ubiquinone oxidoreductase subunit [Grosmannia clavigera
           kw1407]
          Length = 243

 Score =  239 bits (611), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 109/141 (77%), Positives = 122/141 (86%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           + +T++D +  W R GS   MTFGLACCAVEMM  S PRYD +RFG   RASPRQSDVMI
Sbjct: 92  YALTTLDIIANWGRQGSFWPMTFGLACCAVEMMHLSTPRYDQDRFGIIFRASPRQSDVMI 151

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVD+YVP
Sbjct: 152 VAGTLTNKMAPALRQVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVP 211

Query: 158 GCPPTAEALIYGILLLQKKIR 178
           GCPPT+EAL+YGI  LQ+K+R
Sbjct: 212 GCPPTSEALMYGIFQLQRKMR 232


>gi|169604652|ref|XP_001795747.1| hypothetical protein SNOG_05340 [Phaeosphaeria nodorum SN15]
 gi|160706616|gb|EAT87731.2| hypothetical protein SNOG_05340 [Phaeosphaeria nodorum SN15]
          Length = 229

 Score =  239 bits (611), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 111/143 (77%), Positives = 122/143 (85%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           + +T++DQ+  WAR  SL  MTFGLACCAVEMM  S PRYD +R G   RASPRQSDVMI
Sbjct: 78  YALTTLDQMANWARQSSLWPMTFGLACCAVEMMHLSTPRYDQDRLGIIFRASPRQSDVMI 137

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGTLTNKMA ALR+VYDQMP+PR+VISMGSCANGGGYYHYSYSV RGCDRIVPVDIYVP
Sbjct: 138 VAGTLTNKMAPALRQVYDQMPDPRWVISMGSCANGGGYYHYSYSVTRGCDRIVPVDIYVP 197

Query: 158 GCPPTAEALIYGILLLQKKIRRV 180
           GCPPTAEAL+YGI  LQKK+R  
Sbjct: 198 GCPPTAEALMYGIFQLQKKMRHT 220


>gi|225559531|gb|EEH07814.1| NADH-ubiquinone oxidoreductase [Ajellomyces capsulatus G186AR]
          Length = 228

 Score =  239 bits (611), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 111/143 (77%), Positives = 123/143 (86%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           + +T++DQ+  WAR GSL  MTFGLACCAVEMM  S PRYD +R G   RASPRQSDVMI
Sbjct: 77  YALTTLDQVTNWARQGSLWPMTFGLACCAVEMMHLSTPRYDQDRLGIIFRASPRQSDVMI 136

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGTLTNKMA ALR+VYDQMP+PR+VISMGSCANGGGYYHYSYSV RGCDRIVPVDIYVP
Sbjct: 137 VAGTLTNKMAPALRQVYDQMPDPRWVISMGSCANGGGYYHYSYSVTRGCDRIVPVDIYVP 196

Query: 158 GCPPTAEALIYGILLLQKKIRRV 180
           GCPPT+EAL+YGI  LQKK+R  
Sbjct: 197 GCPPTSEALMYGIFQLQKKMRHT 219


>gi|46137521|ref|XP_390452.1| hypothetical protein FG10276.1 [Gibberella zeae PH-1]
          Length = 222

 Score =  239 bits (611), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 113/155 (72%), Positives = 129/155 (83%), Gaps = 3/155 (1%)

Query: 29  ISSEITHKGFL---VTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA 85
           + SEI  KG L   +T++D +  WAR  SL  MTFGLACCAVEMM  S PRYD +R G  
Sbjct: 59  LPSEIPPKGALQYALTTLDAVTNWARQSSLWPMTFGLACCAVEMMHLSTPRYDQDRLGII 118

Query: 86  PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRG 145
            RASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSY+VVRG
Sbjct: 119 FRASPRQSDVMIVAGTLTNKMAPALRQVYDQMPEPRWVISMGSCANGGGYYHYSYAVVRG 178

Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           CDR+VPVD+YVPGCPPT+EAL+YGI  LQ+K+R+ 
Sbjct: 179 CDRVVPVDVYVPGCPPTSEALMYGIFQLQRKMRQT 213


>gi|260223141|emb|CBA33408.1| NADH-quinone oxidoreductase subunit B [Curvibacter putative
           symbiont of Hydra magnipapillata]
          Length = 158

 Score =  239 bits (611), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 113/152 (74%), Positives = 130/152 (85%), Gaps = 1/152 (0%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPR 91
           + ++GF+ TS D +V WA+TGS+  MTFGLACCAVEMM A+  RYD+ RFG    RASPR
Sbjct: 4   VLNEGFVTTSYDSVVNWAKTGSIWPMTFGLACCAVEMMHAAAARYDISRFGSEVFRASPR 63

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
           QSD+MIVAGTL NKMA ALR+VYDQM EPR+V+SMGSCANGGGYYHYSYSVVRGCDRIVP
Sbjct: 64  QSDLMIVAGTLCNKMAPALRKVYDQMSEPRWVLSMGSCANGGGYYHYSYSVVRGCDRIVP 123

Query: 152 VDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           VD+YVPGCPPTAEAL+YGIL LQ+KIRR   +
Sbjct: 124 VDVYVPGCPPTAEALLYGILQLQQKIRRTQTI 155


>gi|119897688|ref|YP_932901.1| NADH dehydrogenase subunit B [Azoarcus sp. BH72]
 gi|218527941|sp|A1K5A9|NUOB1_AZOSB RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName:
           Full=NADH dehydrogenase I subunit B 1; AltName:
           Full=NDH-1 subunit B 1
 gi|119670101|emb|CAL94014.1| putative NADH-ubiquinone oxidoreductase chain B [Azoarcus sp. BH72]
          Length = 158

 Score =  239 bits (611), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 111/151 (73%), Positives = 127/151 (84%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           +  +GF+ TS+D ++ W RTGSL  MTFGLACCAVEM+ A   RYDL+RFG   R SPRQ
Sbjct: 6   VFREGFVTTSLDAVINWTRTGSLWPMTFGLACCAVEMIHAGCSRYDLDRFGVVFRPSPRQ 65

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           SD+MIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPV
Sbjct: 66  SDLMIVAGTLCNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPV 125

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           D+YVPGCPPTAEAL+YGI+ LQ KI+R   +
Sbjct: 126 DVYVPGCPPTAEALLYGIIQLQNKIKRTNTI 156


>gi|167588033|ref|ZP_02380421.1| NADH dehydrogenase subunit B [Burkholderia ubonensis Bu]
          Length = 167

 Score =  239 bits (610), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 110/148 (74%), Positives = 129/148 (87%)

Query: 30  SSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS 89
           S  +   GF+VTS++ ++  ART SL +MTFGLACCAVEMM A+  RYD++RFG  PRAS
Sbjct: 5   SFTLEKDGFVVTSLEAVMAAARTNSLWYMTFGLACCAVEMMHAAGARYDMDRFGMIPRAS 64

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQ D+MIV+GTLTNKMA A+R+VYDQM EPRYV+SMGSCANGGGYYHYSYSVVRGCDRI
Sbjct: 65  PRQCDLMIVSGTLTNKMAPAMRKVYDQMAEPRYVVSMGSCANGGGYYHYSYSVVRGCDRI 124

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKI 177
           VPVD+YVPGCPPTAEALIYG++ LQ+KI
Sbjct: 125 VPVDVYVPGCPPTAEALIYGLMQLQRKI 152


>gi|33592008|ref|NP_879652.1| NADH dehydrogenase subunit B [Bordetella pertussis Tohama I]
 gi|33597910|ref|NP_885553.1| NADH dehydrogenase subunit B [Bordetella parapertussis 12822]
 gi|33602815|ref|NP_890375.1| NADH dehydrogenase subunit B [Bordetella bronchiseptica RB50]
 gi|81425363|sp|Q7VZQ4|NUOB_BORPE RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|81426432|sp|Q7W5A8|NUOB_BORPA RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|81429887|sp|Q7WCU0|NUOB_BORBR RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|33571652|emb|CAE41145.1| NADH-ubiquinone oxidoreductase, 20 kDa subunit [Bordetella
           pertussis Tohama I]
 gi|33574339|emb|CAE38675.1| NADH-ubiquinone oxidoreductase, 20 kDa subunit [Bordetella
           parapertussis]
 gi|33577257|emb|CAE35814.1| NADH-ubiquinone oxidoreductase, 20 kDa subunit [Bordetella
           bronchiseptica RB50]
 gi|332381424|gb|AEE66271.1| NADH dehydrogenase subunit B [Bordetella pertussis CS]
          Length = 158

 Score =  239 bits (610), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 109/151 (72%), Positives = 126/151 (83%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           I  +GF+ TS D+ + WA+TGS+  MTFGLACCAVEMM A   RYDL++FG   R SPRQ
Sbjct: 6   ILKQGFITTSADKFLNWAKTGSMWPMTFGLACCAVEMMHAGAARYDLDQFGIIFRPSPRQ 65

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           SD+MIVAGTL NKM  ALR+VYDQMPEPR+V+SMGSCANGGGYYHYSYSVVRGCDRIVPV
Sbjct: 66  SDLMIVAGTLCNKMGPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIVPV 125

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           D+YVPGCPPTAEAL+YG+L +Q KIR    +
Sbjct: 126 DVYVPGCPPTAEALVYGLLQMQNKIRLTNTI 156


>gi|225024124|ref|ZP_03713316.1| hypothetical protein EIKCOROL_00992 [Eikenella corrodens ATCC
           23834]
 gi|294669093|ref|ZP_06734179.1| NADH dehydrogenase, B subunit [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|224943149|gb|EEG24358.1| hypothetical protein EIKCOROL_00992 [Eikenella corrodens ATCC
           23834]
 gi|291309085|gb|EFE50328.1| NADH dehydrogenase, B subunit [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 159

 Score =  239 bits (610), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 112/147 (76%), Positives = 127/147 (86%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           I +KGF+  S D ++ + RTGSL  +TFGLACCAVEMM A M RYDL+RFG   R SPRQ
Sbjct: 6   ILNKGFITASADTVLNYVRTGSLWPVTFGLACCAVEMMHAGMARYDLDRFGIIFRPSPRQ 65

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           SD+MIVAGTLTNKMA ALRRVYDQM EPR+V+SMGSCANGGGYYHYSYSVVRGCDR+VPV
Sbjct: 66  SDLMIVAGTLTNKMAPALRRVYDQMAEPRWVLSMGSCANGGGYYHYSYSVVRGCDRVVPV 125

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179
           D+YVPGCPPTAEALIYG++ LQ KI+R
Sbjct: 126 DVYVPGCPPTAEALIYGLIQLQGKIKR 152


>gi|319761763|ref|YP_004125700.1| NADH-quinone oxidoreductase, b subunit [Alicycliphilus
           denitrificans BC]
 gi|330826543|ref|YP_004389846.1| NADH-quinone oxidoreductase subunit B [Alicycliphilus denitrificans
           K601]
 gi|317116324|gb|ADU98812.1| NADH-quinone oxidoreductase, B subunit [Alicycliphilus
           denitrificans BC]
 gi|329311915|gb|AEB86330.1| NADH-quinone oxidoreductase, B subunit [Alicycliphilus
           denitrificans K601]
          Length = 159

 Score =  239 bits (610), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 114/152 (75%), Positives = 129/152 (84%), Gaps = 1/152 (0%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPR 91
           +  +GF+ TS D +V WA+TGSL  +TFGLACCAVEMM A+  RYDL RFG    RASPR
Sbjct: 5   VMKEGFVTTSYDAVVNWAKTGSLWPVTFGLACCAVEMMHAAAARYDLARFGAEVFRASPR 64

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
           QSD+MIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDR+VP
Sbjct: 65  QSDLMIVAGTLCNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRVVP 124

Query: 152 VDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           VD+YVPGCPPTAEALIYGI+ LQ+KIRR   +
Sbjct: 125 VDVYVPGCPPTAEALIYGIIQLQQKIRRTHTI 156


>gi|240272844|gb|EER36371.1| NADH-ubiquinone oxidoreductase [Ajellomyces capsulatus H143]
 gi|325088617|gb|EGC41927.1| NADH-ubiquinone oxidoreductase [Ajellomyces capsulatus H88]
          Length = 228

 Score =  239 bits (610), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 111/143 (77%), Positives = 123/143 (86%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           + +T++DQ+  WAR GSL  MTFGLACCAVEMM  S PRYD +R G   RASPRQSDVMI
Sbjct: 77  YALTTLDQVTNWARQGSLWPMTFGLACCAVEMMHLSTPRYDQDRLGIIFRASPRQSDVMI 136

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGTLTNKMA ALR+VYDQMP+PR+VISMGSCANGGGYYHYSYSV RGCDRIVPVDIYVP
Sbjct: 137 VAGTLTNKMAPALRQVYDQMPDPRWVISMGSCANGGGYYHYSYSVTRGCDRIVPVDIYVP 196

Query: 158 GCPPTAEALIYGILLLQKKIRRV 180
           GCPPT+EAL+YGI  LQKK+R  
Sbjct: 197 GCPPTSEALMYGIFQLQKKMRHT 219


>gi|160900611|ref|YP_001566193.1| NADH dehydrogenase subunit B [Delftia acidovorans SPH-1]
 gi|218527988|sp|A9BNB3|NUOB_DELAS RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|160366195|gb|ABX37808.1| NADH-quinone oxidoreductase, B subunit [Delftia acidovorans SPH-1]
          Length = 159

 Score =  239 bits (609), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 114/152 (75%), Positives = 129/152 (84%), Gaps = 1/152 (0%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPR 91
           +  +GF+ TS D +V WA+TGSL  MTFGLACCAVEMM A+  RYD+ RFG    RASPR
Sbjct: 5   VMKEGFITTSYDSVVNWAKTGSLWPMTFGLACCAVEMMHAAAARYDIGRFGSEVFRASPR 64

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
           QSD+MIVAGTL NKMA A+R+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVP
Sbjct: 65  QSDLMIVAGTLCNKMAPAMRKVYDQMSEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVP 124

Query: 152 VDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           VD+YVPGCPPTAEALIYGI+ LQ+KIRR   +
Sbjct: 125 VDVYVPGCPPTAEALIYGIIQLQQKIRRTHTI 156


>gi|218767068|ref|YP_002341580.1| NADH dehydrogenase subunit B [Neisseria meningitidis Z2491]
 gi|218527997|sp|A1INN9|NUOB_NEIMA RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|121051076|emb|CAM07346.1| NADH dehydrogenase I chain B [Neisseria meningitidis Z2491]
          Length = 160

 Score =  239 bits (609), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 110/151 (72%), Positives = 129/151 (85%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           +  KGF+ TS D ++ + RTGSL  +TFGLACCAVEMM A M RYDL+RFG   R SPRQ
Sbjct: 6   VLKKGFITTSADTVLNYMRTGSLWPVTFGLACCAVEMMHAGMARYDLDRFGIIFRPSPRQ 65

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           +D+MIVAGTLTNKMASALRRVYDQ+ EPR+V+SMGSCANGGGYYHYSYSVVRG DR+VPV
Sbjct: 66  ADLMIVAGTLTNKMASALRRVYDQLAEPRWVLSMGSCANGGGYYHYSYSVVRGADRVVPV 125

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           D+YVPGCPPTAEALIYG++ LQ+KI+R   +
Sbjct: 126 DVYVPGCPPTAEALIYGLIQLQQKIKRTSTI 156


>gi|58381050|ref|XP_310968.2| AGAP000170-PA [Anopheles gambiae str. PEST]
 gi|55243649|gb|EAA06474.3| AGAP000170-PA [Anopheles gambiae str. PEST]
          Length = 207

 Score =  239 bits (609), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 107/147 (72%), Positives = 128/147 (87%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           + V  +D ++ W R GS+  +TFGLACCAVEMM  + PRYD++RFG   RASPRQ+DV+I
Sbjct: 56  WTVARLDDVLNWGRKGSIWPLTFGLACCAVEMMHIAAPRYDMDRFGVVFRASPRQADVII 115

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRI+PVDIYVP
Sbjct: 116 VAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVP 175

Query: 158 GCPPTAEALIYGILLLQKKIRRVGNVK 184
           GCPPTAEAL+YG+L LQKK++R+  ++
Sbjct: 176 GCPPTAEALLYGVLQLQKKVKRMKTLQ 202


>gi|217424871|ref|ZP_03456368.1| putative NADH-quinone oxidoreductase, B subunit [Burkholderia
           pseudomallei 576]
 gi|217392327|gb|EEC32352.1| putative NADH-quinone oxidoreductase, B subunit [Burkholderia
           pseudomallei 576]
          Length = 264

 Score =  239 bits (609), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 107/145 (73%), Positives = 126/145 (86%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           +   GF+VT++D  +  A+  SL +MTFGLACCAVEMM A+  RYD++RFG  PRASPRQ
Sbjct: 105 LEKDGFIVTTLDAAMAAAQKNSLWYMTFGLACCAVEMMHAAGARYDMDRFGMIPRASPRQ 164

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
            D+MIVAGTLTNKMA A+RRVYDQM EPRYV+SMGSCANGGGYYHYSYSVVRGCDRIVPV
Sbjct: 165 CDLMIVAGTLTNKMAPAMRRVYDQMAEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPV 224

Query: 153 DIYVPGCPPTAEALIYGILLLQKKI 177
           D+YVPGCPPTAEAL+YG++ LQ+K+
Sbjct: 225 DVYVPGCPPTAEALVYGLMQLQRKV 249


>gi|329118899|ref|ZP_08247594.1| NADH-quinone oxidoreductase subunit B [Neisseria bacilliformis ATCC
           BAA-1200]
 gi|327464927|gb|EGF11217.1| NADH-quinone oxidoreductase subunit B [Neisseria bacilliformis ATCC
           BAA-1200]
          Length = 159

 Score =  239 bits (609), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 111/147 (75%), Positives = 128/147 (87%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           + +KGF+ TS D ++ + RTGSL  +TFGLACCAVEMM A M RYDL+RFG   R SPRQ
Sbjct: 6   VLNKGFITTSADTVLNYMRTGSLWPVTFGLACCAVEMMHAGMARYDLDRFGIIFRPSPRQ 65

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           SD+MIVAGTLTNKMA ALRRVYDQM EPR+V+SMGSCANGGGYYHYSYSVVRGCDR+VPV
Sbjct: 66  SDLMIVAGTLTNKMAPALRRVYDQMAEPRWVLSMGSCANGGGYYHYSYSVVRGCDRVVPV 125

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179
           D+YVPGCPPTAEAL+YG++ LQ KI+R
Sbjct: 126 DVYVPGCPPTAEALLYGLIQLQGKIKR 152


>gi|194765258|ref|XP_001964744.1| GF23350 [Drosophila ananassae]
 gi|190615016|gb|EDV30540.1| GF23350 [Drosophila ananassae]
          Length = 211

 Score =  239 bits (609), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 111/154 (72%), Positives = 129/154 (83%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP 90
            + T   + V  +D L+ W R GS+  MTFGLACCAVEMM  + PRYD++R+G   RASP
Sbjct: 53  DQKTWAEWTVARLDDLLNWGRKGSIWPMTFGLACCAVEMMHIAAPRYDMDRYGVVFRASP 112

Query: 91  RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150
           RQ+D MIVAGTLTNKMA A+R+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRIV
Sbjct: 113 RQADCMIVAGTLTNKMAPAMRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIV 172

Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           PVDIYVPGCPPTAEAL+YGIL LQKKI+R+  ++
Sbjct: 173 PVDIYVPGCPPTAEALMYGILQLQKKIKRMRTIQ 206


>gi|195024283|ref|XP_001985843.1| GH21035 [Drosophila grimshawi]
 gi|193901843|gb|EDW00710.1| GH21035 [Drosophila grimshawi]
          Length = 226

 Score =  239 bits (609), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 106/142 (74%), Positives = 126/142 (88%)

Query: 43  VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL 102
           +D L+ W R GS+  +TFGLACCAVEMM  + PRYD++R+G   RASPRQ+DV+IVAGTL
Sbjct: 80  LDDLLNWGRKGSIWPLTFGLACCAVEMMHIAAPRYDMDRYGVVFRASPRQADVIIVAGTL 139

Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162
           TNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRI+PVDIYVPGCPPT
Sbjct: 140 TNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPT 199

Query: 163 AEALIYGILLLQKKIRRVGNVK 184
           AEAL+YG+L LQKK++R+  ++
Sbjct: 200 AEALLYGVLQLQKKVKRMKTLQ 221


>gi|226348821|gb|ACO50725.1| NADH dehydrogenase subunit 10 [Micromonas pusilla CCMP1545]
          Length = 158

 Score =  239 bits (609), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 111/145 (76%), Positives = 124/145 (85%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           ++++ VD L+ WAR GSL  MTFGLACCAVEMM     RYDL+RFG   R SPRQSDVMI
Sbjct: 7   YILSKVDALLNWARKGSLWPMTFGLACCAVEMMHTGAARYDLDRFGMIFRPSPRQSDVMI 66

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGTLTNKMA ALR+VYDQMPEP++VISMGSCANGGGYYHYSY+VVRGCDRIVPVD+YVP
Sbjct: 67  VAGTLTNKMAPALRKVYDQMPEPKWVISMGSCANGGGYYHYSYAVVRGCDRIVPVDVYVP 126

Query: 158 GCPPTAEALIYGILLLQKKIRRVGN 182
           GCPPTAEAL+YG+L LQKKI    N
Sbjct: 127 GCPPTAEALLYGLLQLQKKIHTQTN 151


>gi|222475044|ref|YP_002563459.1| NADH dehydrogenase I chain B (nuoB) [Anaplasma marginale str.
           Florida]
 gi|238065053|sp|B9KI91|NUOB_ANAMF RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|222419180|gb|ACM49203.1| NADH dehydrogenase I chain B (nuoB) [Anaplasma marginale str.
           Florida]
          Length = 190

 Score =  239 bits (609), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 118/151 (78%), Positives = 130/151 (86%), Gaps = 5/151 (3%)

Query: 36  KGFLVTS----VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPR 91
           +GF+VT     VD +V W+R+GSL  MTFGLACCAVEMM  +  RYDL+R+G   RASPR
Sbjct: 35  RGFVVTKFSDLVDSVVRWSRSGSLWPMTFGLACCAVEMMHTAASRYDLDRYGVMFRASPR 94

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
           Q+DVMIVAGTLTNKMA ALRRVYDQM EP+YVISMGSCANGGGYYHYSYSVVRGCDRIVP
Sbjct: 95  QADVMIVAGTLTNKMAPALRRVYDQMAEPKYVISMGSCANGGGYYHYSYSVVRGCDRIVP 154

Query: 152 VDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
           VDIYVPGCPPTAEAL+YGIL LQ+KI R GN
Sbjct: 155 VDIYVPGCPPTAEALLYGILCLQQKIIR-GN 184


>gi|124382496|ref|YP_001024763.1| NADH-quinone oxidoreductase, B subunit [Burkholderia mallei NCTC
           10229]
 gi|126447059|ref|YP_001079101.1| NADH-quinone oxidoreductase, B subunit [Burkholderia mallei NCTC
           10247]
 gi|124290516|gb|ABM99785.1| NADH-quinone oxidoreductase, B subunit [Burkholderia mallei NCTC
           10229]
 gi|126239913|gb|ABO03025.1| NADH-quinone oxidoreductase, B subunit [Burkholderia mallei NCTC
           10247]
          Length = 322

 Score =  239 bits (609), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 107/145 (73%), Positives = 126/145 (86%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           +   GF+VT++D  +  A+  SL +MTFGLACCAVEMM A+  RYD++RFG  PRASPRQ
Sbjct: 163 LEKDGFIVTTLDAAMAAAQKNSLWYMTFGLACCAVEMMHAAGARYDMDRFGMIPRASPRQ 222

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
            D+MIVAGTLTNKMA A+RRVYDQM EPRYV+SMGSCANGGGYYHYSYSVVRGCDRIVPV
Sbjct: 223 CDLMIVAGTLTNKMAPAMRRVYDQMAEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPV 282

Query: 153 DIYVPGCPPTAEALIYGILLLQKKI 177
           D+YVPGCPPTAEAL+YG++ LQ+K+
Sbjct: 283 DVYVPGCPPTAEALVYGLMQLQRKV 307


>gi|255550832|ref|XP_002516464.1| NADH-plastoquinone oxidoreductase, putative [Ricinus communis]
 gi|223544284|gb|EEF45805.1| NADH-plastoquinone oxidoreductase, putative [Ricinus communis]
          Length = 215

 Score =  239 bits (609), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 111/142 (78%), Positives = 123/142 (86%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           ++++ VD L+ WAR GS+  MTFGLACCAVEMM     RYDL+RFG   R SPRQSD MI
Sbjct: 64  YVISKVDDLMNWARRGSIWPMTFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDCMI 123

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP
Sbjct: 124 VAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 183

Query: 158 GCPPTAEALIYGILLLQKKIRR 179
           GCPPTAEAL+YG+L LQK+I R
Sbjct: 184 GCPPTAEALLYGLLQLQKRINR 205


>gi|126454466|ref|YP_001067829.1| putative NADH-quinone oxidoreductase, B subunit [Burkholderia
           pseudomallei 1106a]
 gi|126228108|gb|ABN91648.1| putative NADH-quinone oxidoreductase, B subunit [Burkholderia
           pseudomallei 1106a]
          Length = 262

 Score =  239 bits (609), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 107/145 (73%), Positives = 126/145 (86%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           +   GF+VT++D  +  A+  SL +MTFGLACCAVEMM A+  RYD++RFG  PRASPRQ
Sbjct: 103 LEKDGFIVTTLDAAMAAAQKNSLWYMTFGLACCAVEMMHAAGARYDMDRFGMIPRASPRQ 162

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
            D+MIVAGTLTNKMA A+RRVYDQM EPRYV+SMGSCANGGGYYHYSYSVVRGCDRIVPV
Sbjct: 163 CDLMIVAGTLTNKMAPAMRRVYDQMAEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPV 222

Query: 153 DIYVPGCPPTAEALIYGILLLQKKI 177
           D+YVPGCPPTAEAL+YG++ LQ+K+
Sbjct: 223 DVYVPGCPPTAEALVYGLMQLQRKV 247


>gi|121597251|ref|YP_990264.1| NADH-quinone oxidoreductase, B subunit [Burkholderia mallei SAVP1]
 gi|254355774|ref|ZP_04972053.1| NADH-quinone oxidoreductase, B subunit [Burkholderia mallei
           2002721280]
 gi|121225049|gb|ABM48580.1| NADH-quinone oxidoreductase, B subunit [Burkholderia mallei SAVP1]
 gi|148024745|gb|EDK82928.1| NADH-quinone oxidoreductase, B subunit [Burkholderia mallei
           2002721280]
          Length = 293

 Score =  239 bits (609), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 107/145 (73%), Positives = 126/145 (86%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           +   GF+VT++D  +  A+  SL +MTFGLACCAVEMM A+  RYD++RFG  PRASPRQ
Sbjct: 134 LEKDGFIVTTLDAAMAAAQKNSLWYMTFGLACCAVEMMHAAGARYDMDRFGMIPRASPRQ 193

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
            D+MIVAGTLTNKMA A+RRVYDQM EPRYV+SMGSCANGGGYYHYSYSVVRGCDRIVPV
Sbjct: 194 CDLMIVAGTLTNKMAPAMRRVYDQMAEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPV 253

Query: 153 DIYVPGCPPTAEALIYGILLLQKKI 177
           D+YVPGCPPTAEAL+YG++ LQ+K+
Sbjct: 254 DVYVPGCPPTAEALVYGLMQLQRKV 278


>gi|195479097|ref|XP_002100761.1| GE15999 [Drosophila yakuba]
 gi|194188285|gb|EDX01869.1| GE15999 [Drosophila yakuba]
          Length = 221

 Score =  238 bits (608), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 106/145 (73%), Positives = 127/145 (87%)

Query: 40  VTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVA 99
           +  +D L+ W R GS+  +TFGLACCAVEMM  + PRYD++R+G   RASPRQ+DV+IVA
Sbjct: 72  LARLDDLLNWGRKGSIWPLTFGLACCAVEMMHIAAPRYDMDRYGVVFRASPRQADVIIVA 131

Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGC 159
           GTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRI+PVDIYVPGC
Sbjct: 132 GTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVPGC 191

Query: 160 PPTAEALIYGILLLQKKIRRVGNVK 184
           PPTAEAL+YG+L LQKK++R+  ++
Sbjct: 192 PPTAEALMYGVLQLQKKVKRMKTLQ 216


>gi|194765240|ref|XP_001964735.1| GF23344 [Drosophila ananassae]
 gi|190615007|gb|EDV30531.1| GF23344 [Drosophila ananassae]
          Length = 212

 Score =  238 bits (608), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 115/172 (66%), Positives = 137/172 (79%), Gaps = 3/172 (1%)

Query: 14  QSSCSLEKVDADFSRISSEITHKG-FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQA 72
           + +  LEK  A +S      +  G + V  +D LV W+R GS+  MTFGLACCAVEMM  
Sbjct: 38  EKNFGLEK--AKYSPFGGNQSSTGEWAVARLDDLVNWSRKGSIWPMTFGLACCAVEMMHF 95

Query: 73  SMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANG 132
           + PRYD++R+G   R SPRQ+D MIVAGTLTNKMA ALR+VYD+MP+PR+VISMGSCANG
Sbjct: 96  AAPRYDMDRYGVLFRESPRQADCMIVAGTLTNKMAPALRKVYDEMPDPRWVISMGSCANG 155

Query: 133 GGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           GGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG+L LQKKI+R+  V+
Sbjct: 156 GGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALMYGVLQLQKKIKRIKTVQ 207


>gi|195567032|ref|XP_002107079.1| GD15767 [Drosophila simulans]
 gi|194204476|gb|EDX18052.1| GD15767 [Drosophila simulans]
          Length = 221

 Score =  238 bits (608), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 110/189 (58%), Positives = 143/189 (75%), Gaps = 6/189 (3%)

Query: 2   GLTTVNQKIISGQSSCSLEKVDADFSRI------SSEITHKGFLVTSVDQLVTWARTGSL 55
            L  +N  ++  Q +  + +V  +  +       + + +   + +  +D L+ W R GS+
Sbjct: 28  ALPALNMVLVRQQQTLPVAEVAQNLPKKGYSPFGTKQSSVAEWSLARLDDLLNWGRKGSI 87

Query: 56  MWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYD 115
             +TFGLACCAVEMM  + PRYD++R+G   RASPRQ+DV+IVAGTLTNKMA ALR+VYD
Sbjct: 88  WPLTFGLACCAVEMMHIAAPRYDMDRYGVVFRASPRQADVIIVAGTLTNKMAPALRKVYD 147

Query: 116 QMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175
           QMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRI+PVDIYVPGCPPTAEAL+YG+L LQK
Sbjct: 148 QMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALMYGVLQLQK 207

Query: 176 KIRRVGNVK 184
           K++R+  ++
Sbjct: 208 KVKRMKTLQ 216


>gi|224284596|gb|ACN40031.1| unknown [Picea sitchensis]
          Length = 205

 Score =  238 bits (608), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 111/142 (78%), Positives = 122/142 (85%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           ++++ +D LV WAR GS+  MTFGLACCAVEMM     RYDL+RFG   R SPRQSD MI
Sbjct: 54  YVISKIDALVNWARKGSIWPMTFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDCMI 113

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGG YYHYSYSVVRGCDRIVPVDIYVP
Sbjct: 114 VAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGRYYHYSYSVVRGCDRIVPVDIYVP 173

Query: 158 GCPPTAEALIYGILLLQKKIRR 179
           GCPPTAEAL+YG+L LQKKI R
Sbjct: 174 GCPPTAEALLYGLLQLQKKIHR 195


>gi|195357046|ref|XP_002044925.1| GM11675 [Drosophila sechellia]
 gi|194124267|gb|EDW46310.1| GM11675 [Drosophila sechellia]
          Length = 221

 Score =  238 bits (608), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 110/189 (58%), Positives = 143/189 (75%), Gaps = 6/189 (3%)

Query: 2   GLTTVNQKIISGQSSCSLEKVDADFSRI------SSEITHKGFLVTSVDQLVTWARTGSL 55
            L  +N  ++  Q +  + +V  +  +       + + +   + +  +D L+ W R GS+
Sbjct: 28  ALPALNMVLVRQQQTLPVAEVAQNLPKKGYSPFGTKQSSVAEWSLARLDDLLNWGRKGSI 87

Query: 56  MWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYD 115
             +TFGLACCAVEMM  + PRYD++R+G   RASPRQ+DV+IVAGTLTNKMA ALR+VYD
Sbjct: 88  WPLTFGLACCAVEMMHIAAPRYDMDRYGVVFRASPRQADVIIVAGTLTNKMAPALRKVYD 147

Query: 116 QMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175
           QMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRI+PVDIYVPGCPPTAEAL+YG+L LQK
Sbjct: 148 QMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALMYGVLQLQK 207

Query: 176 KIRRVGNVK 184
           K++R+  ++
Sbjct: 208 KVKRMKTLQ 216


>gi|158291431|ref|XP_312939.3| AGAP003231-PA [Anopheles gambiae str. PEST]
 gi|157017771|gb|EAA08348.4| AGAP003231-PA [Anopheles gambiae str. PEST]
          Length = 220

 Score =  238 bits (608), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 108/147 (73%), Positives = 127/147 (86%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           + V  +D L+ W R GS+    FGLACCA+EMMQA+ PRYD++RFG   RASPRQ+D +I
Sbjct: 69  WTVARLDDLLNWGRKGSMWPTMFGLACCAMEMMQAAAPRYDIDRFGVLFRASPRQTDFII 128

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGTLTNKMA ALR++YDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRI+PVDIYVP
Sbjct: 129 VAGTLTNKMAPALRKIYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVP 188

Query: 158 GCPPTAEALIYGILLLQKKIRRVGNVK 184
           GCPPTAEALIYG+L LQKK++R+  V+
Sbjct: 189 GCPPTAEALIYGVLQLQKKVKRMKTVQ 215


>gi|18859983|ref|NP_573097.1| CG9172, isoform A [Drosophila melanogaster]
 gi|24642371|ref|NP_727921.1| CG9172, isoform B [Drosophila melanogaster]
 gi|7293168|gb|AAF48552.1| CG9172, isoform A [Drosophila melanogaster]
 gi|16769444|gb|AAL28941.1| LD31474p [Drosophila melanogaster]
 gi|22832322|gb|AAN09378.1| CG9172, isoform B [Drosophila melanogaster]
 gi|220944268|gb|ACL84677.1| CG9172-PA [synthetic construct]
 gi|220954204|gb|ACL89645.1| CG9172-PA [synthetic construct]
          Length = 221

 Score =  238 bits (608), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 110/189 (58%), Positives = 143/189 (75%), Gaps = 6/189 (3%)

Query: 2   GLTTVNQKIISGQSSCSLEKVDADFSRI------SSEITHKGFLVTSVDQLVTWARTGSL 55
            L  +N  ++  Q +  + +V  +  +       + + +   + +  +D L+ W R GS+
Sbjct: 28  ALPALNLALVRQQQTLPVAEVAQNLPKKGYSPFGTKQSSVAEWSLARLDDLLNWGRKGSI 87

Query: 56  MWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYD 115
             +TFGLACCAVEMM  + PRYD++R+G   RASPRQ+DV+IVAGTLTNKMA ALR+VYD
Sbjct: 88  WPLTFGLACCAVEMMHIAAPRYDMDRYGVVFRASPRQADVIIVAGTLTNKMAPALRKVYD 147

Query: 116 QMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175
           QMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRI+PVDIYVPGCPPTAEAL+YG+L LQK
Sbjct: 148 QMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALMYGVLQLQK 207

Query: 176 KIRRVGNVK 184
           K++R+  ++
Sbjct: 208 KVKRMKTLQ 216


>gi|48843827|gb|AAT47086.1| putative NADH-ubiquinone oxidoreductase 20 kDa subunit [Oryza
           sativa Japonica Group]
 gi|125553102|gb|EAY98811.1| hypothetical protein OsI_20756 [Oryza sativa Indica Group]
 gi|215769469|dbj|BAH01698.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 204

 Score =  238 bits (608), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 112/142 (78%), Positives = 122/142 (85%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           F+++ VD L+ WAR GS+  MTFGLACCAVEMM     RYD +RFG   R SPRQSD MI
Sbjct: 53  FVISKVDDLMNWARRGSIWPMTFGLACCAVEMMHTGASRYDFDRFGVIFRPSPRQSDCMI 112

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP
Sbjct: 113 VAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 172

Query: 158 GCPPTAEALIYGILLLQKKIRR 179
           GCPPTAEAL+YG+L LQKKI R
Sbjct: 173 GCPPTAEALLYGVLQLQKKINR 194


>gi|126442009|ref|YP_001060575.1| putative NADH-quinone oxidoreductase, B subunit [Burkholderia
           pseudomallei 668]
 gi|126221502|gb|ABN85008.1| putative NADH-quinone oxidoreductase, B subunit [Burkholderia
           pseudomallei 668]
          Length = 297

 Score =  238 bits (608), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 107/145 (73%), Positives = 126/145 (86%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           +   GF+VT++D  +  A+  SL +MTFGLACCAVEMM A+  RYD++RFG  PRASPRQ
Sbjct: 138 LEKDGFIVTTLDAAMAAAQKNSLWYMTFGLACCAVEMMHAAGARYDMDRFGMIPRASPRQ 197

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
            D+MIVAGTLTNKMA A+RRVYDQM EPRYV+SMGSCANGGGYYHYSYSVVRGCDRIVPV
Sbjct: 198 CDLMIVAGTLTNKMAPAMRRVYDQMAEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPV 257

Query: 153 DIYVPGCPPTAEALIYGILLLQKKI 177
           D+YVPGCPPTAEAL+YG++ LQ+K+
Sbjct: 258 DVYVPGCPPTAEALVYGLMQLQRKV 282


>gi|194894035|ref|XP_001977994.1| GG19352 [Drosophila erecta]
 gi|190649643|gb|EDV46921.1| GG19352 [Drosophila erecta]
          Length = 221

 Score =  238 bits (608), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 106/145 (73%), Positives = 127/145 (87%)

Query: 40  VTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVA 99
           +  +D L+ W R GS+  +TFGLACCAVEMM  + PRYD++R+G   RASPRQ+DV+IVA
Sbjct: 72  LARLDDLLNWGRKGSIWPLTFGLACCAVEMMHIAAPRYDMDRYGVVFRASPRQADVIIVA 131

Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGC 159
           GTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRI+PVDIYVPGC
Sbjct: 132 GTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVPGC 191

Query: 160 PPTAEALIYGILLLQKKIRRVGNVK 184
           PPTAEAL+YG+L LQKK++R+  ++
Sbjct: 192 PPTAEALMYGVLQLQKKVKRMKTLQ 216


>gi|114864804|gb|ABI83769.1| NADH-ubiquinone oxidoreductase [Anopheles funestus]
          Length = 207

 Score =  238 bits (608), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 107/146 (73%), Positives = 127/146 (86%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           + V  +D ++ W R GS+  +TFGLACCAVEMM  + PRYD++RFG   RASPRQ+DV+I
Sbjct: 56  WTVARLDDVLNWGRKGSIWPLTFGLACCAVEMMHIAAPRYDMDRFGVVFRASPRQADVII 115

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRI+PVDIYVP
Sbjct: 116 VAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVP 175

Query: 158 GCPPTAEALIYGILLLQKKIRRVGNV 183
           GCPPTAEAL+YG+L LQKK++R+  +
Sbjct: 176 GCPPTAEALLYGVLQLQKKVKRMKTL 201


>gi|312383258|gb|EFR28415.1| hypothetical protein AND_03673 [Anopheles darlingi]
          Length = 210

 Score =  238 bits (608), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 107/147 (72%), Positives = 128/147 (87%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           + V  +D ++ W R GS+  +TFGLACCAVEMM  + PRYD++RFG   RASPRQ+DV+I
Sbjct: 59  WTVARLDDVLNWGRKGSIWPLTFGLACCAVEMMHIAAPRYDMDRFGVVFRASPRQADVII 118

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRI+PVDIYVP
Sbjct: 119 VAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVP 178

Query: 158 GCPPTAEALIYGILLLQKKIRRVGNVK 184
           GCPPTAEAL+YG+L LQKK++R+  ++
Sbjct: 179 GCPPTAEALLYGVLQLQKKVKRMKTLQ 205


>gi|121609761|ref|YP_997568.1| NADH dehydrogenase subunit B [Verminephrobacter eiseniae EF01-2]
 gi|218528011|sp|A1WLP3|NUOB_VEREI RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|121554401|gb|ABM58550.1| NADH-quinone oxidoreductase, B subunit [Verminephrobacter eiseniae
           EF01-2]
          Length = 159

 Score =  238 bits (608), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 113/150 (75%), Positives = 128/150 (85%), Gaps = 1/150 (0%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RAS 89
             +  +GF+ TS D +V WA+TGSL  MTFGLACCAVEM+ ++  RYDL RFG    RAS
Sbjct: 3   ENVMKEGFITTSYDSVVNWAKTGSLWPMTFGLACCAVEMIHSAAARYDLARFGAEVFRAS 62

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQ+D+MIVAGTL NKMA ALR+VYDQM EPR+V+SMGSCANGGGYYHYSYSVVRGCDRI
Sbjct: 63  PRQADLMIVAGTLCNKMAPALRKVYDQMSEPRWVLSMGSCANGGGYYHYSYSVVRGCDRI 122

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           VPVD+YVPGCPPTAEALIYGIL LQ+KIRR
Sbjct: 123 VPVDVYVPGCPPTAEALIYGILQLQQKIRR 152


>gi|328769253|gb|EGF79297.1| hypothetical protein BATDEDRAFT_12186 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 170

 Score =  238 bits (607), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 110/147 (74%), Positives = 127/147 (86%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           F++TS+D LV W RT S+  +TFGLACCAVEMM  + PRYD +R G   RASPRQ+DV+I
Sbjct: 19  FVLTSLDSLVNWNRTSSIWPLTFGLACCAVEMMHMATPRYDQDRLGIVFRASPRQADVLI 78

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGTLTNKMA ALR++YDQMP PR+VISMGSCANGGGYYHYSYSVVRGCDRI+PVDIYVP
Sbjct: 79  VAGTLTNKMAPALRKIYDQMPSPRWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVP 138

Query: 158 GCPPTAEALIYGILLLQKKIRRVGNVK 184
           GCPPT+EAL+YG+L LQKK+RR   VK
Sbjct: 139 GCPPTSEALLYGVLQLQKKMRRERVVK 165


>gi|307109384|gb|EFN57622.1| hypothetical protein CHLNCDRAFT_21383 [Chlorella variabilis]
          Length = 160

 Score =  238 bits (607), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 112/147 (76%), Positives = 123/147 (83%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           F+V+ VDQLV WAR  S+  MTFGLACCAVEMM     RYD +RFG   R SPRQSD MI
Sbjct: 9   FVVSKVDQLVNWARRSSIWPMTFGLACCAVEMMHTGAARYDFDRFGIIFRPSPRQSDCMI 68

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGTLTNKMA ALR+VYDQMPEPR+V+SMGSCANGGGYYHYSY+VVRGCDRIVPVDIYVP
Sbjct: 69  VAGTLTNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYAVVRGCDRIVPVDIYVP 128

Query: 158 GCPPTAEALIYGILLLQKKIRRVGNVK 184
           GCPPTAEAL+YG+L LQKKI R    +
Sbjct: 129 GCPPTAEALLYGMLQLQKKIGRTKKTQ 155


>gi|56416679|ref|YP_153753.1| NADH dehydrogenase subunit B [Anaplasma marginale str. St. Maries]
 gi|269958902|ref|YP_003328691.1| NADH dehydrogenase subunit B [Anaplasma centrale str. Israel]
 gi|81359162|sp|Q5PB32|NUOB_ANAMM RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|56387911|gb|AAV86498.1| NADH dehydrogenase I chain B [Anaplasma marginale str. St. Maries]
 gi|269848733|gb|ACZ49377.1| NADH dehydrogenase subunit B [Anaplasma centrale str. Israel]
          Length = 175

 Score =  238 bits (607), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 118/151 (78%), Positives = 130/151 (86%), Gaps = 5/151 (3%)

Query: 36  KGFLVTS----VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPR 91
           +GF+VT     VD +V W+R+GSL  MTFGLACCAVEMM  +  RYDL+R+G   RASPR
Sbjct: 20  RGFVVTKFSDLVDSVVRWSRSGSLWPMTFGLACCAVEMMHTAASRYDLDRYGVMFRASPR 79

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
           Q+DVMIVAGTLTNKMA ALRRVYDQM EP+YVISMGSCANGGGYYHYSYSVVRGCDRIVP
Sbjct: 80  QADVMIVAGTLTNKMAPALRRVYDQMAEPKYVISMGSCANGGGYYHYSYSVVRGCDRIVP 139

Query: 152 VDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
           VDIYVPGCPPTAEAL+YGIL LQ+KI R GN
Sbjct: 140 VDIYVPGCPPTAEALLYGILCLQQKIIR-GN 169


>gi|225718368|gb|ACO15030.1| NADH dehydrogenase iron-sulfur protein 7, mitochondrial precursor
           [Caligus clemensi]
          Length = 211

 Score =  238 bits (607), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 116/177 (65%), Positives = 137/177 (77%), Gaps = 9/177 (5%)

Query: 8   QKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAV 67
           +K ISGQ S           R+  +     ++V  +D L+ W R  SL  +TFGLACCAV
Sbjct: 39  EKDISGQYSPF---------RVDIKKNKAEYVVARLDDLINWGRKTSLWPLTFGLACCAV 89

Query: 68  EMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMG 127
           EMM  + PRYD++R+G   RASPRQ+DV++VAGTLTNKMA A R+VYDQM EPR+VISMG
Sbjct: 90  EMMHIAAPRYDMDRYGVVFRASPRQADVILVAGTLTNKMAPAFRKVYDQMLEPRWVISMG 149

Query: 128 SCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           SCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQKKI+R+ NV+
Sbjct: 150 SCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALMYGILQLQKKIKRMKNVQ 206


>gi|114777362|ref|ZP_01452359.1| NADH dehydrogenase subunit B [Mariprofundus ferrooxydans PV-1]
 gi|114552144|gb|EAU54646.1| NADH dehydrogenase subunit B [Mariprofundus ferrooxydans PV-1]
          Length = 158

 Score =  238 bits (607), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 111/151 (73%), Positives = 125/151 (82%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           +  KGF+ T+ D+L+  AR GSL  MTFGLACCAVEMM A   RYDL+RFG   R SPRQ
Sbjct: 6   VLEKGFITTTADKLINGARAGSLWPMTFGLACCAVEMMHAGASRYDLDRFGIVFRPSPRQ 65

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           SDVM+VAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSYSV RGCDRIVPV
Sbjct: 66  SDVMVVAGTLCNKMAPALRKVYDQMSEPRWVISMGSCANGGGYYHYSYSVTRGCDRIVPV 125

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           DIYVPGCPPTAEAL+YG + LQ+KI+R   +
Sbjct: 126 DIYVPGCPPTAEALLYGFIQLQEKIKRTNTI 156


>gi|297604806|ref|NP_001056143.2| Os05g0533700 [Oryza sativa Japonica Group]
 gi|255676519|dbj|BAF18057.2| Os05g0533700 [Oryza sativa Japonica Group]
          Length = 154

 Score =  238 bits (607), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 112/142 (78%), Positives = 122/142 (85%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           F+++ VD L+ WAR GS+  MTFGLACCAVEMM     RYD +RFG   R SPRQSD MI
Sbjct: 3   FVISKVDDLMNWARRGSIWPMTFGLACCAVEMMHTGASRYDFDRFGVIFRPSPRQSDCMI 62

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP
Sbjct: 63  VAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 122

Query: 158 GCPPTAEALIYGILLLQKKIRR 179
           GCPPTAEAL+YG+L LQKKI R
Sbjct: 123 GCPPTAEALLYGVLQLQKKINR 144


>gi|195457088|ref|XP_002075420.1| GK17823 [Drosophila willistoni]
 gi|194171505|gb|EDW86406.1| GK17823 [Drosophila willistoni]
          Length = 229

 Score =  238 bits (607), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 106/142 (74%), Positives = 126/142 (88%)

Query: 43  VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL 102
           +D L+ W R GS+  +TFGLACCAVEMM  + PRYD++R+G   RASPRQ+DV+IVAGTL
Sbjct: 83  LDDLLNWGRKGSIWPLTFGLACCAVEMMHIAAPRYDMDRYGVVFRASPRQADVIIVAGTL 142

Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162
           TNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRI+PVDIYVPGCPPT
Sbjct: 143 TNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPT 202

Query: 163 AEALIYGILLLQKKIRRVGNVK 184
           AEAL+YG+L LQKK++R+  ++
Sbjct: 203 AEALMYGVLQLQKKVKRMKTLQ 224


>gi|145612619|ref|XP_001412223.1| mitochondrial NADH-ubiquinone oxidoreductase 20 kD subunit
           [Magnaporthe oryzae 70-15]
 gi|145019756|gb|EDK03984.1| mitochondrial NADH-ubiquinone oxidoreductase 20 kD subunit
           [Magnaporthe oryzae 70-15]
          Length = 222

 Score =  238 bits (607), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 115/172 (66%), Positives = 134/172 (77%), Gaps = 3/172 (1%)

Query: 10  IISGQSSCSLEKVDADFSRISSEITHKG---FLVTSVDQLVTWARTGSLMWMTFGLACCA 66
           + + QSS  L + +     + S+   KG   + +T++D +  W R  SL  MTFGLACCA
Sbjct: 40  VPAAQSSTGLARPERKEVPLPSQEGTKGVVQYALTTLDIIANWGRQSSLWPMTFGLACCA 99

Query: 67  VEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISM 126
           VEMM  S PRYD +R G   RASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPR+VISM
Sbjct: 100 VEMMHLSTPRYDQDRLGIIFRASPRQSDVMIVAGTLTNKMAPALRQVYDQMPEPRWVISM 159

Query: 127 GSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           GSCANGGGYYHYSYSVVRGCDRIVPVD+YVPGCPPT+EAL+YGI  LQ+K+R
Sbjct: 160 GSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTSEALMYGIFQLQRKMR 211


>gi|330913880|ref|XP_003296406.1| hypothetical protein PTT_06502 [Pyrenophora teres f. teres 0-1]
 gi|311331451|gb|EFQ95498.1| hypothetical protein PTT_06502 [Pyrenophora teres f. teres 0-1]
          Length = 230

 Score =  238 bits (607), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 113/155 (72%), Positives = 127/155 (81%), Gaps = 3/155 (1%)

Query: 29  ISSEITHKG---FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA 85
           + S+   KG   + +T++DQ+  WAR  SL  MTFGLACCAVEMM  S PRYD +R G  
Sbjct: 67  LPSQEGKKGAMQYALTTLDQVANWARQSSLWPMTFGLACCAVEMMHLSTPRYDQDRLGII 126

Query: 86  PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRG 145
            RASPRQSDVMIVAGTLTNKMA ALR+VYDQMP+PR+VISMGSCANGGGYYHYSYSV RG
Sbjct: 127 FRASPRQSDVMIVAGTLTNKMAPALRQVYDQMPDPRWVISMGSCANGGGYYHYSYSVTRG 186

Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           CDRIVPVDIYVPGCPPTAEAL+YG+  LQKK+R  
Sbjct: 187 CDRIVPVDIYVPGCPPTAEALMYGVFQLQKKMRHT 221


>gi|332375552|gb|AEE62917.1| unknown [Dendroctonus ponderosae]
          Length = 227

 Score =  238 bits (607), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 107/147 (72%), Positives = 126/147 (85%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           + +  +D L+ W R GS+  +TFGLACCAVEMM  + PRYD++R+G   RASPRQ+D +I
Sbjct: 76  YALARLDDLLNWGRKGSVWPLTFGLACCAVEMMHIAAPRYDMDRYGVVFRASPRQADCII 135

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRI+PVDIYVP
Sbjct: 136 VAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVP 195

Query: 158 GCPPTAEALIYGILLLQKKIRRVGNVK 184
           GCPPTAEAL+YG+L LQKKI+R   V+
Sbjct: 196 GCPPTAEALMYGVLQLQKKIKRYNTVQ 222


>gi|261197135|ref|XP_002624970.1| NADH-ubiquinone oxidoreductase subunit B [Ajellomyces dermatitidis
           SLH14081]
 gi|239595600|gb|EEQ78181.1| NADH-ubiquinone oxidoreductase subunit B [Ajellomyces dermatitidis
           SLH14081]
 gi|239606495|gb|EEQ83482.1| NADH-ubiquinone oxidoreductase subunit B [Ajellomyces dermatitidis
           ER-3]
 gi|327356325|gb|EGE85182.1| NADH-ubiquinone oxidoreductase subunit B [Ajellomyces dermatitidis
           ATCC 18188]
          Length = 223

 Score =  238 bits (607), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 111/143 (77%), Positives = 122/143 (85%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           F +T++DQ+  WAR  SL  MTFGLACCAVEMM  S PRYD +R G   RASPRQSDVMI
Sbjct: 72  FALTTLDQVTNWARQSSLWPMTFGLACCAVEMMHLSTPRYDQDRLGIIFRASPRQSDVMI 131

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGTLTNKMA ALR+VYDQMP+PR+VISMGSCANGGGYYHYSYSV RGCDRIVPVDIYVP
Sbjct: 132 VAGTLTNKMAPALRQVYDQMPDPRWVISMGSCANGGGYYHYSYSVTRGCDRIVPVDIYVP 191

Query: 158 GCPPTAEALIYGILLLQKKIRRV 180
           GCPPT+EAL+YGI  LQKK+R  
Sbjct: 192 GCPPTSEALMYGIFQLQKKMRHT 214


>gi|116201555|ref|XP_001226589.1| hypothetical protein CHGG_08662 [Chaetomium globosum CBS 148.51]
 gi|88177180|gb|EAQ84648.1| hypothetical protein CHGG_08662 [Chaetomium globosum CBS 148.51]
          Length = 223

 Score =  238 bits (606), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 115/163 (70%), Positives = 131/163 (80%), Gaps = 3/163 (1%)

Query: 19  LEKVDADFSRISSEITHKG---FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMP 75
           L K D     + S+   KG   + +T++D +  WAR GSL  MTFGLACCAVEMM  S P
Sbjct: 50  LAKPDRKEVPLPSQEPTKGLVQYALTTLDIMTNWARQGSLWPMTFGLACCAVEMMHLSAP 109

Query: 76  RYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY 135
           RYD +R G   RASPRQSDVMIVAGTLTNKMA ALR+VYDQMP+PR+VISMGSCANGGGY
Sbjct: 110 RYDQDRLGIIFRASPRQSDVMIVAGTLTNKMAPALRQVYDQMPDPRWVISMGSCANGGGY 169

Query: 136 YHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           YHYSYSVVRGCDRIVPVD+YVPGCPPT+EAL+YGI  LQ+K+R
Sbjct: 170 YHYSYSVVRGCDRIVPVDVYVPGCPPTSEALMYGIFQLQRKMR 212


>gi|195123641|ref|XP_002006312.1| GI18637 [Drosophila mojavensis]
 gi|193911380|gb|EDW10247.1| GI18637 [Drosophila mojavensis]
          Length = 223

 Score =  237 bits (605), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 106/142 (74%), Positives = 126/142 (88%)

Query: 43  VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL 102
           +D L+ W R GS+  +TFGLACCAVEMM  + PRYD++R+G   RASPRQ+DV+IVAGTL
Sbjct: 77  LDDLLNWGRKGSIWPLTFGLACCAVEMMHIAAPRYDMDRYGVVFRASPRQADVIIVAGTL 136

Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162
           TNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRI+PVDIYVPGCPPT
Sbjct: 137 TNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPT 196

Query: 163 AEALIYGILLLQKKIRRVGNVK 184
           AEAL+YG+L LQKK++R+  ++
Sbjct: 197 AEALMYGVLQLQKKVKRMKTLQ 218


>gi|167841106|ref|ZP_02467790.1| NADH dehydrogenase subunit B [Burkholderia thailandensis MSMB43]
          Length = 167

 Score =  237 bits (605), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 108/145 (74%), Positives = 126/145 (86%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           +   GF+VT++D  +  A+  SL +MTFGLACCAVEMM A+  RYD++RFG  PRASPRQ
Sbjct: 8   LEKDGFIVTTLDAAMAAAQKNSLWYMTFGLACCAVEMMHAAGARYDMDRFGMIPRASPRQ 67

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
            D+MIVAGTLTNKMA A+RRVYDQM EPRYV+SMGSCANGGGYYHYSYSVVRGCDRIVPV
Sbjct: 68  CDLMIVAGTLTNKMAPAMRRVYDQMAEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPV 127

Query: 153 DIYVPGCPPTAEALIYGILLLQKKI 177
           DIYVPGCPPTAEAL+YG++ LQ+K+
Sbjct: 128 DIYVPGCPPTAEALVYGLMQLQRKV 152


>gi|307611657|emb|CBX01348.1| NADH dehydrogenase I chain B [Legionella pneumophila 130b]
          Length = 146

 Score =  237 bits (605), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 112/140 (80%), Positives = 124/140 (88%)

Query: 40  VTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVA 99
           +T+V++LV WAR+GS+  MTFGLACCAVEMM     RYDL+RFG   R SPRQSDVMIVA
Sbjct: 1   MTTVEKLVGWARSGSMWPMTFGLACCAVEMMHVGAARYDLDRFGIIFRPSPRQSDVMIVA 60

Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGC 159
           GTL NKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVD+YVPGC
Sbjct: 61  GTLCNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGC 120

Query: 160 PPTAEALIYGILLLQKKIRR 179
           PPTAEAL+YGI+ LQ KIRR
Sbjct: 121 PPTAEALLYGIIQLQNKIRR 140


>gi|170092259|ref|XP_001877351.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164647210|gb|EDR11454.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 191

 Score =  237 bits (605), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 111/154 (72%), Positives = 131/154 (85%), Gaps = 2/154 (1%)

Query: 28  RISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA 85
           ++S E    G  ++++++D++  WAR GS+  MTFGLACCAVEMM  +  RYD +R G  
Sbjct: 28  QLSLEQPQNGAEYVLSTLDKVTNWARQGSMWPMTFGLACCAVEMMHMAAARYDQDRLGVV 87

Query: 86  PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRG 145
            RASPRQSD+MIVAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRG
Sbjct: 88  FRASPRQSDIMIVAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRG 147

Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           CDRIVPVDIYVPGCPPTAEAL+YG+L LQ+K+RR
Sbjct: 148 CDRIVPVDIYVPGCPPTAEALLYGMLQLQRKMRR 181


>gi|195381615|ref|XP_002049543.1| GJ21650 [Drosophila virilis]
 gi|194144340|gb|EDW60736.1| GJ21650 [Drosophila virilis]
          Length = 223

 Score =  237 bits (604), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 106/142 (74%), Positives = 126/142 (88%)

Query: 43  VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL 102
           +D L+ W R GS+  +TFGLACCAVEMM  + PRYD++R+G   RASPRQ+DV+IVAGTL
Sbjct: 77  LDDLLNWGRKGSIWPLTFGLACCAVEMMHIAAPRYDMDRYGVVFRASPRQADVIIVAGTL 136

Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162
           TNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRI+PVDIYVPGCPPT
Sbjct: 137 TNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPT 196

Query: 163 AEALIYGILLLQKKIRRVGNVK 184
           AEAL+YG+L LQKK++R+  ++
Sbjct: 197 AEALLYGVLQLQKKVKRMRTLQ 218


>gi|322694377|gb|EFY86208.1| mitochondrial NADH-ubiquinone oxidoreductase 20 kD subunit
           [Metarhizium acridum CQMa 102]
          Length = 367

 Score =  237 bits (604), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 113/153 (73%), Positives = 127/153 (83%), Gaps = 3/153 (1%)

Query: 29  ISSEITHKG---FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA 85
           + SE   KG   + +T++D +  WAR  SL  MTFGLACCAVEMM  S PRYD +R G  
Sbjct: 204 LPSEEGTKGVVQYALTTLDVIANWARQSSLWPMTFGLACCAVEMMHLSTPRYDQDRLGII 263

Query: 86  PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRG 145
            RASPRQSDVMIVAGTLTNKMA ALR+VYDQMP+PR+VISMGSCANGGGYYHYSYSVVRG
Sbjct: 264 FRASPRQSDVMIVAGTLTNKMAPALRQVYDQMPDPRWVISMGSCANGGGYYHYSYSVVRG 323

Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           CDRIVPVDIYVPGCPPT+EAL+YGI  LQ+K+R
Sbjct: 324 CDRIVPVDIYVPGCPPTSEALMYGIFQLQRKMR 356


>gi|290562629|gb|ADD38710.1| NADH dehydrogenase iron-sulfur protein 7, mitochondrial
           [Lepeophtheirus salmonis]
          Length = 211

 Score =  237 bits (604), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 109/147 (74%), Positives = 127/147 (86%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           ++V  +D L+ W R  SL  +TFGLACCAVEMM  + PRYD++R+G   RASPRQ+DV++
Sbjct: 60  YVVARLDDLINWGRKTSLWPLTFGLACCAVEMMHIAAPRYDMDRYGVVFRASPRQADVIL 119

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGTLTNKMA A R+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP
Sbjct: 120 VAGTLTNKMAPAFRKVYDQMLEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 179

Query: 158 GCPPTAEALIYGILLLQKKIRRVGNVK 184
           GCPPTAEAL+YGIL LQKKI+R+ NV+
Sbjct: 180 GCPPTAEALMYGILQLQKKIKRMKNVQ 206


>gi|255067282|ref|ZP_05319137.1| NADH dehydrogenase, B subunit [Neisseria sicca ATCC 29256]
 gi|261364348|ref|ZP_05977231.1| NADH dehydrogenase, B subunit [Neisseria mucosa ATCC 25996]
 gi|261378539|ref|ZP_05983112.1| NADH dehydrogenase, B subunit [Neisseria cinerea ATCC 14685]
 gi|255048433|gb|EET43897.1| NADH dehydrogenase, B subunit [Neisseria sicca ATCC 29256]
 gi|269145089|gb|EEZ71507.1| NADH dehydrogenase, B subunit [Neisseria cinerea ATCC 14685]
 gi|288567612|gb|EFC89172.1| NADH dehydrogenase, B subunit [Neisseria mucosa ATCC 25996]
          Length = 160

 Score =  237 bits (604), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 109/151 (72%), Positives = 128/151 (84%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           +  KGF+ TS D ++ + RTGSL  +TFGLACCAVEMM A M RYDL+RFG   R SPRQ
Sbjct: 6   VLKKGFITTSADTVLNYMRTGSLWPVTFGLACCAVEMMHAGMARYDLDRFGIIFRPSPRQ 65

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           +D+MIVAGTLTNKMA ALRRVYDQ+ EPR+V+SMGSCANGGGYYHYSYSVVRG DR+VPV
Sbjct: 66  ADLMIVAGTLTNKMAPALRRVYDQLAEPRWVLSMGSCANGGGYYHYSYSVVRGADRVVPV 125

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           D+YVPGCPPTAEALIYG++ LQ+KI+R   +
Sbjct: 126 DVYVPGCPPTAEALIYGLMQLQQKIKRTSTI 156


>gi|126002095|ref|XP_001352261.1| GA21592 [Drosophila pseudoobscura pseudoobscura]
 gi|195175510|ref|XP_002028490.1| GL16625 [Drosophila persimilis]
 gi|54640648|gb|EAL29409.1| GA21592 [Drosophila pseudoobscura pseudoobscura]
 gi|194103687|gb|EDW25730.1| GL16625 [Drosophila persimilis]
          Length = 220

 Score =  237 bits (604), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 106/145 (73%), Positives = 127/145 (87%)

Query: 40  VTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVA 99
           +  +D L+ W R GS+  +TFGLACCAVEMM  + PRYD++R+G   RASPRQ+DV+IVA
Sbjct: 71  LARLDDLLNWGRKGSIWPLTFGLACCAVEMMHIAAPRYDMDRYGVVFRASPRQADVIIVA 130

Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGC 159
           GTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRI+PVDIYVPGC
Sbjct: 131 GTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVPGC 190

Query: 160 PPTAEALIYGILLLQKKIRRVGNVK 184
           PPTAEAL+YG+L LQKK++R+  ++
Sbjct: 191 PPTAEALMYGVLQLQKKVKRMKTLQ 215


>gi|255956935|ref|XP_002569220.1| Pc21g22510 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211590931|emb|CAP97148.1| Pc21g22510 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 222

 Score =  237 bits (604), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 109/143 (76%), Positives = 125/143 (87%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           +++TS+D +  WAR GSL  ++FGLACCAVEMM  SMPRYD +R G   RASPRQSDVMI
Sbjct: 71  YVLTSLDGIANWARQGSLWPLSFGLACCAVEMMHLSMPRYDQDRLGIIFRASPRQSDVMI 130

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGT+TNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRG DR++PVDIY+P
Sbjct: 131 VAGTVTNKMAPALRQVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGVDRLIPVDIYLP 190

Query: 158 GCPPTAEALIYGILLLQKKIRRV 180
           GCPPTAEAL+YGI  LQKK+RR 
Sbjct: 191 GCPPTAEALMYGIFQLQKKMRRT 213


>gi|189196624|ref|XP_001934650.1| NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial
           precursor [Pyrenophora tritici-repentis Pt-1C-BFP]
 gi|187980529|gb|EDU47155.1| NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial
           precursor [Pyrenophora tritici-repentis Pt-1C-BFP]
          Length = 209

 Score =  237 bits (604), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 113/155 (72%), Positives = 127/155 (81%), Gaps = 3/155 (1%)

Query: 29  ISSEITHKG---FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA 85
           + S+   KG   + +T++DQ+  WAR  SL  MTFGLACCAVEMM  S PRYD +R G  
Sbjct: 46  LPSQEGKKGAMQYALTTLDQVANWARQSSLWPMTFGLACCAVEMMHLSTPRYDQDRLGII 105

Query: 86  PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRG 145
            RASPRQSDVMIVAGTLTNKMA ALR+VYDQMP+PR+VISMGSCANGGGYYHYSYSV RG
Sbjct: 106 FRASPRQSDVMIVAGTLTNKMAPALRQVYDQMPDPRWVISMGSCANGGGYYHYSYSVTRG 165

Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           CDRIVPVDIYVPGCPPTAEAL+YG+  LQKK+R  
Sbjct: 166 CDRIVPVDIYVPGCPPTAEALMYGVFQLQKKMRHT 200


>gi|85085876|ref|XP_957592.1| NADH:ubiquinone oxidoreductase 19.3kD subunit [Neurospora crassa
           OR74A]
 gi|6647651|sp|O47950|NDUS7_NEUCR RecName: Full=NADH-ubiquinone oxidoreductase 19.3 kDa subunit,
           mitochondrial; AltName: Full=Complex I-19.3kD;
           Short=CI-19.3kD; Flags: Precursor
 gi|2764632|emb|CAA04802.1| 19.3kD iron-sulfur subunit of mitochondrial complex I [Neurospora
           crassa]
 gi|28918685|gb|EAA28356.1| NADH:ubiquinone oxidoreductase 19.3kD subunit [Neurospora crassa
           OR74A]
 gi|40882330|emb|CAF06152.1| NADH-ubiquinone oxidoreductase 19.3 kDa subunit, mitochondrial
           precursor [Neurospora crassa]
          Length = 226

 Score =  236 bits (603), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 110/141 (78%), Positives = 123/141 (87%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           + +T++D +V WAR  SL  MTFGLACCAVEMM  S PRYD +R G   RASPRQSDVMI
Sbjct: 75  YALTTLDSIVNWARQSSLWPMTFGLACCAVEMMHLSTPRYDQDRLGIIFRASPRQSDVMI 134

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGTLTNKMA ALR+VYDQMP+PR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP
Sbjct: 135 VAGTLTNKMAPALRQVYDQMPDPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 194

Query: 158 GCPPTAEALIYGILLLQKKIR 178
           GCPPT+EAL+YGI  LQ+K+R
Sbjct: 195 GCPPTSEALMYGIFQLQRKMR 215


>gi|29654738|ref|NP_820430.1| NADH dehydrogenase subunit B [Coxiella burnetii RSA 493]
 gi|153207226|ref|ZP_01945990.1| NADH dehydrogenase (ubiquinone), B subunit [Coxiella burnetii 'MSU
           Goat Q177']
 gi|154706106|ref|YP_001423957.1| NADH dehydrogenase subunit B [Coxiella burnetii Dugway 5J108-111]
 gi|161830495|ref|YP_001597292.1| NADH dehydrogenase subunit B [Coxiella burnetii RSA 331]
 gi|165918784|ref|ZP_02218870.1| NADH dehydrogenase (ubiquinone), B subunit [Coxiella burnetii RSA
           334]
 gi|212212183|ref|YP_002303119.1| NADH dehydrogenase subunit B [Coxiella burnetii CbuG_Q212]
 gi|212218213|ref|YP_002305000.1| NADH dehydrogenase subunit B [Coxiella burnetii CbuK_Q154]
 gi|81628735|sp|Q83BQ6|NUOB_COXBU RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|218527985|sp|A9KBK5|NUOB_COXBN RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|218527986|sp|A9N8X2|NUOB_COXBR RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|238055289|sp|B6J695|NUOB_COXB1 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|238055290|sp|B6IZ46|NUOB_COXB2 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|29542006|gb|AAO90944.1| NADH-quinone oxidoreductase chain B [Coxiella burnetii RSA 493]
 gi|120576714|gb|EAX33338.1| NADH dehydrogenase (ubiquinone), B subunit [Coxiella burnetii 'MSU
           Goat Q177']
 gi|154355392|gb|ABS76854.1| NADH-quinone oxidoreductase chain B [Coxiella burnetii Dugway
           5J108-111]
 gi|161762362|gb|ABX78004.1| NADH dehydrogenase (ubiquinone), B subunit [Coxiella burnetii RSA
           331]
 gi|165917508|gb|EDR36112.1| NADH dehydrogenase (ubiquinone), B subunit [Coxiella burnetii RSA
           334]
 gi|212010593|gb|ACJ17974.1| NADH-quinone oxidoreductase chain B [Coxiella burnetii CbuG_Q212]
 gi|212012475|gb|ACJ19855.1| NADH-quinone oxidoreductase chain B [Coxiella burnetii CbuK_Q154]
          Length = 161

 Score =  236 bits (603), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 114/147 (77%), Positives = 128/147 (87%), Gaps = 1/147 (0%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPR 91
           +T +GFL+TS+D L+ WAR+GSL  MTFGLACCAVEMMQ +  RYDL+RFG    R SPR
Sbjct: 5   LTKEGFLLTSLDDLMRWARSGSLWPMTFGLACCAVEMMQCASSRYDLDRFGAGLFRPSPR 64

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
           QSDVMIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHY+YSVVRGCDRIVP
Sbjct: 65  QSDVMIVAGTLCNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYAYSVVRGCDRIVP 124

Query: 152 VDIYVPGCPPTAEALIYGILLLQKKIR 178
           VD+YVPGCPPTAEAL YGI+ L+ KIR
Sbjct: 125 VDVYVPGCPPTAEALFYGIMQLRNKIR 151


>gi|15676166|ref|NP_273298.1| NADH dehydrogenase subunit B [Neisseria meningitidis MC58]
 gi|121634114|ref|YP_974359.1| NADH dehydrogenase subunit B [Neisseria meningitidis FAM18]
 gi|194099646|ref|YP_002002777.1| NADH dehydrogenase subunit B [Neisseria gonorrhoeae NCCP11945]
 gi|225077017|ref|ZP_03720216.1| hypothetical protein NEIFLAOT_02069 [Neisseria flavescens
           NRL30031/H210]
 gi|239999843|ref|ZP_04719767.1| NADH dehydrogenase subunit B [Neisseria gonorrhoeae 35/02]
 gi|240015002|ref|ZP_04721915.1| NADH dehydrogenase subunit B [Neisseria gonorrhoeae DGI18]
 gi|240081589|ref|ZP_04726132.1| NADH dehydrogenase subunit B [Neisseria gonorrhoeae FA19]
 gi|240113871|ref|ZP_04728361.1| NADH dehydrogenase subunit B [Neisseria gonorrhoeae MS11]
 gi|240116602|ref|ZP_04730664.1| NADH dehydrogenase subunit B [Neisseria gonorrhoeae PID18]
 gi|240118826|ref|ZP_04732888.1| NADH dehydrogenase subunit B [Neisseria gonorrhoeae PID1]
 gi|240122071|ref|ZP_04735033.1| NADH dehydrogenase subunit B [Neisseria gonorrhoeae PID24-1]
 gi|240124365|ref|ZP_04737321.1| NADH dehydrogenase subunit B [Neisseria gonorrhoeae PID332]
 gi|240126577|ref|ZP_04739463.1| NADH dehydrogenase subunit B [Neisseria gonorrhoeae SK-92-679]
 gi|241760743|ref|ZP_04758835.1| NADH-quinone oxidoreductase, b subunit [Neisseria flavescens SK114]
 gi|254494626|ref|ZP_05107797.1| NADH dehydrogenase subunit I B [Neisseria gonorrhoeae 1291]
 gi|254805716|ref|YP_003083937.1| NADH dehydrogenase I chain B [Neisseria meningitidis alpha14]
 gi|260439637|ref|ZP_05793453.1| NADH dehydrogenase subunit B [Neisseria gonorrhoeae DGI2]
 gi|261379579|ref|ZP_05984152.1| NADH dehydrogenase, B subunit [Neisseria subflava NJ9703]
 gi|261400470|ref|ZP_05986595.1| NADH dehydrogenase, B subunit [Neisseria lactamica ATCC 23970]
 gi|268595653|ref|ZP_06129820.1| NADH-quinone oxidoreductase subunit B [Neisseria gonorrhoeae 35/02]
 gi|268597685|ref|ZP_06131852.1| NADH-quinone oxidoreductase subunit B [Neisseria gonorrhoeae FA19]
 gi|268599937|ref|ZP_06134104.1| NADH dehydrogenase subunit I B [Neisseria gonorrhoeae MS11]
 gi|268602271|ref|ZP_06136438.1| NADH dehydrogenase subunit I B [Neisseria gonorrhoeae PID18]
 gi|268604537|ref|ZP_06138704.1| NADH dehydrogenase subunit I B [Neisseria gonorrhoeae PID1]
 gi|268682992|ref|ZP_06149854.1| NADH dehydrogenase subunit I B [Neisseria gonorrhoeae PID332]
 gi|268685157|ref|ZP_06152019.1| NADH dehydrogenase subunit I B [Neisseria gonorrhoeae SK-92-679]
 gi|296313746|ref|ZP_06863687.1| NADH dehydrogenase, B subunit [Neisseria polysaccharea ATCC 43768]
 gi|304389067|ref|ZP_07371111.1| NADH-quinone oxidoreductase subunit B [Neisseria meningitidis ATCC
           13091]
 gi|313669285|ref|YP_004049569.1| NADH dehydrogenase I chain B [Neisseria lactamica ST-640]
 gi|319638815|ref|ZP_07993573.1| NADH dehydrogenase subunit I B [Neisseria mucosa C102]
 gi|81785111|sp|Q9K1C2|NUOB_NEIMB RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|218527996|sp|B4RPI3|NUOB_NEIG2 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|218527998|sp|A1KRS3|NUOB_NEIMF RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|7225464|gb|AAF40696.1| NADH dehydrogenase I, B subunit [Neisseria meningitidis MC58]
 gi|120865820|emb|CAM09552.1| NADH dehydrogenase I chain B [Neisseria meningitidis FAM18]
 gi|193934936|gb|ACF30760.1| NADH dehydrogenase I, B subunit [Neisseria gonorrhoeae NCCP11945]
 gi|224951574|gb|EEG32783.1| hypothetical protein NEIFLAOT_02069 [Neisseria flavescens
           NRL30031/H210]
 gi|226513666|gb|EEH63011.1| NADH dehydrogenase subunit I B [Neisseria gonorrhoeae 1291]
 gi|241318924|gb|EER55450.1| NADH-quinone oxidoreductase, b subunit [Neisseria flavescens SK114]
 gi|254669258|emb|CBA08154.1| NADH dehydrogenase I chain B [Neisseria meningitidis alpha14]
 gi|261391774|emb|CAX49229.1| NADH-quinone oxidoreductase chain B (NADH dehydrogenase I, chain B;
           NDH-1, chain B) [Neisseria meningitidis 8013]
 gi|268549042|gb|EEZ44460.1| NADH-quinone oxidoreductase subunit B [Neisseria gonorrhoeae 35/02]
 gi|268551473|gb|EEZ46492.1| NADH-quinone oxidoreductase subunit B [Neisseria gonorrhoeae FA19]
 gi|268584068|gb|EEZ48744.1| NADH dehydrogenase subunit I B [Neisseria gonorrhoeae MS11]
 gi|268586402|gb|EEZ51078.1| NADH dehydrogenase subunit I B [Neisseria gonorrhoeae PID18]
 gi|268588668|gb|EEZ53344.1| NADH dehydrogenase subunit I B [Neisseria gonorrhoeae PID1]
 gi|268623276|gb|EEZ55676.1| NADH dehydrogenase subunit I B [Neisseria gonorrhoeae PID332]
 gi|268625441|gb|EEZ57841.1| NADH dehydrogenase subunit I B [Neisseria gonorrhoeae SK-92-679]
 gi|269209729|gb|EEZ76184.1| NADH dehydrogenase, B subunit [Neisseria lactamica ATCC 23970]
 gi|284798053|gb|EFC53400.1| NADH dehydrogenase, B subunit [Neisseria subflava NJ9703]
 gi|296839669|gb|EFH23607.1| NADH dehydrogenase, B subunit [Neisseria polysaccharea ATCC 43768]
 gi|304336940|gb|EFM03130.1| NADH-quinone oxidoreductase subunit B [Neisseria meningitidis ATCC
           13091]
 gi|308388462|gb|ADO30782.1| NADH dehydrogenase I chain B [Neisseria meningitidis alpha710]
 gi|309379802|emb|CBX21578.1| unnamed protein product [Neisseria lactamica Y92-1009]
 gi|313006747|emb|CBN88217.1| NADH dehydrogenase I chain B [Neisseria lactamica 020-06]
 gi|316985170|gb|EFV64122.1| NADH-quinone oxidoreductase, B subunit [Neisseria meningitidis
           H44/76]
 gi|317165131|gb|ADV08672.1| NADH dehydrogenase subunit B [Neisseria gonorrhoeae TCDC-NG08107]
 gi|317399719|gb|EFV80382.1| NADH dehydrogenase subunit I B [Neisseria mucosa C102]
 gi|319411275|emb|CBY91682.1| NADH-quinone oxidoreductase chain B (NADH dehydrogenase I, chain B;
           NDH-1, chain B) [Neisseria meningitidis WUE 2594]
 gi|325129040|gb|EGC51890.1| NADH:ubiquinone dehydrogenase, B subunit [Neisseria meningitidis
           N1568]
 gi|325130970|gb|EGC53697.1| NADH:ubiquinone dehydrogenase, B subunit [Neisseria meningitidis
           OX99.30304]
 gi|325131612|gb|EGC54319.1| NADH:ubiquinone dehydrogenase, B subunit [Neisseria meningitidis
           M6190]
 gi|325135045|gb|EGC57673.1| NADH:ubiquinone dehydrogenase, B subunit [Neisseria meningitidis
           M13399]
 gi|325137069|gb|EGC59665.1| NADH:ubiquinone dehydrogenase, B subunit [Neisseria meningitidis
           M0579]
 gi|325139133|gb|EGC61679.1| NADH:ubiquinone dehydrogenase, B subunit [Neisseria meningitidis
           ES14902]
 gi|325141078|gb|EGC63581.1| NADH:ubiquinone dehydrogenase, B subunit [Neisseria meningitidis
           CU385]
 gi|325143083|gb|EGC65430.1| NADH:ubiquinone dehydrogenase, B subunit [Neisseria meningitidis
           961-5945]
 gi|325143153|gb|EGC65499.1| NADH:ubiquinone dehydrogenase, B subunit [Neisseria meningitidis
           961-5945]
 gi|325145306|gb|EGC67584.1| NADH:ubiquinone dehydrogenase, B subunit [Neisseria meningitidis
           M01-240013]
 gi|325197528|gb|ADY92984.1| NADH:ubiquinone dehydrogenase, B subunit [Neisseria meningitidis
           G2136]
 gi|325199445|gb|ADY94900.1| NADH:ubiquinone dehydrogenase, B subunit [Neisseria meningitidis
           H44/76]
 gi|325202929|gb|ADY98383.1| NADH:ubiquinone dehydrogenase, B subunit [Neisseria meningitidis
           M01-240149]
 gi|325203359|gb|ADY98812.1| NADH:ubiquinone dehydrogenase, B subunit [Neisseria meningitidis
           M01-240355]
 gi|325205327|gb|ADZ00780.1| NADH:ubiquinone dehydrogenase, B subunit [Neisseria meningitidis
           M04-240196]
 gi|325207273|gb|ADZ02725.1| NADH:ubiquinone dehydrogenase, B subunit [Neisseria meningitidis
           NZ-05/33]
          Length = 160

 Score =  236 bits (603), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 109/151 (72%), Positives = 128/151 (84%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           +  KGF+ TS D ++ + RTGSL  +TFGLACCAVEMM A M RYDL+RFG   R SPRQ
Sbjct: 6   VLKKGFITTSADTVLNYMRTGSLWPVTFGLACCAVEMMHAGMARYDLDRFGIIFRPSPRQ 65

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           +D+MIVAGTLTNKMA ALRRVYDQ+ EPR+V+SMGSCANGGGYYHYSYSVVRG DR+VPV
Sbjct: 66  ADLMIVAGTLTNKMAPALRRVYDQLAEPRWVLSMGSCANGGGYYHYSYSVVRGADRVVPV 125

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           D+YVPGCPPTAEALIYG++ LQ+KI+R   +
Sbjct: 126 DVYVPGCPPTAEALIYGLIQLQQKIKRTSTI 156


>gi|58267664|ref|XP_570988.1| hypothetical protein [Cryptococcus neoformans var. neoformans
           JEC21]
 gi|57227222|gb|AAW43681.1| conserved hypothetical protein [Cryptococcus neoformans var.
           neoformans JEC21]
          Length = 250

 Score =  236 bits (603), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 111/155 (71%), Positives = 131/155 (84%), Gaps = 2/155 (1%)

Query: 27  SRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF 84
           +++S E    G  ++++++D++V W R GS+  MTFGLACCAVEMM  +  RYD +R G 
Sbjct: 86  NQLSLETPRNGAEYVLSTLDKIVNWGRQGSMWPMTFGLACCAVEMMHMAAARYDQDRLGV 145

Query: 85  APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR 144
             RASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVR
Sbjct: 146 VFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVR 205

Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           GCDRIVPVDIYVPGCPPTAEAL+YG+L L +K+RR
Sbjct: 206 GCDRIVPVDIYVPGCPPTAEALLYGMLQLMRKMRR 240


>gi|134112065|ref|XP_775568.1| hypothetical protein CNBE2820 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50258227|gb|EAL20921.1| hypothetical protein CNBE2820 [Cryptococcus neoformans var.
           neoformans B-3501A]
          Length = 250

 Score =  236 bits (603), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 111/155 (71%), Positives = 131/155 (84%), Gaps = 2/155 (1%)

Query: 27  SRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF 84
           +++S E    G  ++++++D++V W R GS+  MTFGLACCAVEMM  +  RYD +R G 
Sbjct: 86  NQLSLETPRNGAEYVLSTLDKIVNWGRQGSMWPMTFGLACCAVEMMHMAAARYDQDRLGV 145

Query: 85  APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR 144
             RASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVR
Sbjct: 146 VFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVR 205

Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           GCDRIVPVDIYVPGCPPTAEAL+YG+L L +K+RR
Sbjct: 206 GCDRIVPVDIYVPGCPPTAEALLYGMLQLMRKMRR 240


>gi|313227729|emb|CBY22878.1| unnamed protein product [Oikopleura dioica]
          Length = 228

 Score =  236 bits (603), Expect = 9e-61,   Method: Compositional matrix adjust.
 Identities = 114/163 (69%), Positives = 130/163 (79%), Gaps = 2/163 (1%)

Query: 21  KVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLE 80
           K +AD  RI        ++ T +D +  +    SL  MTFGLACCAVEMM  + PRYD++
Sbjct: 38  KREAD--RIKKFDNKVEYVTTKLDDIKNYISANSLWPMTFGLACCAVEMMHFAAPRYDMD 95

Query: 81  RFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSY 140
           RFG   RASPRQSD+MIVAGTL+NKMA ALRRVYDQMP PRYV+SMGSCANGGGYYHYSY
Sbjct: 96  RFGVVFRASPRQSDLMIVAGTLSNKMAPALRRVYDQMPFPRYVLSMGSCANGGGYYHYSY 155

Query: 141 SVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           SVVRG DRIVPVD+YVPGCPP+AEAL+YGILLLQKKI+R  NV
Sbjct: 156 SVVRGVDRIVPVDVYVPGCPPSAEALLYGILLLQKKIKRSANV 198


>gi|53717370|ref|YP_105287.1| NADH dehydrogenase subunit B [Burkholderia mallei ATCC 23344]
 gi|53720672|ref|YP_109658.1| NADH dehydrogenase subunit B [Burkholderia pseudomallei K96243]
 gi|67640239|ref|ZP_00439053.1| NADH-quinone oxidoreductase chain b (nadh dehydrogenasei, chain b)
           (ndh-1, chain b) [Burkholderia mallei GB8 horse 4]
 gi|134283174|ref|ZP_01769875.1| putative NADH-quinone oxidoreductase, B subunit [Burkholderia
           pseudomallei 305]
 gi|167004154|ref|ZP_02269924.1| NADH-quinone oxidoreductase, B subunit [Burkholderia mallei PRL-20]
 gi|167721386|ref|ZP_02404622.1| NADH dehydrogenase subunit B [Burkholderia pseudomallei DM98]
 gi|167847462|ref|ZP_02472970.1| NADH dehydrogenase subunit B [Burkholderia pseudomallei B7210]
 gi|167904433|ref|ZP_02491638.1| NADH dehydrogenase subunit B [Burkholderia pseudomallei NCTC 13177]
 gi|242317299|ref|ZP_04816315.1| putative NADH-quinone oxidoreductase, B subunit [Burkholderia
           pseudomallei 1106b]
 gi|254175821|ref|ZP_04882480.1| NADH-quinone oxidoreductase, B subunit [Burkholderia mallei ATCC
           10399]
 gi|254198551|ref|ZP_04904972.1| putative NADH-quinone oxidoreductase, B subunit [Burkholderia
           pseudomallei S13]
 gi|254203254|ref|ZP_04909616.1| NADH-quinone oxidoreductase, B subunit [Burkholderia mallei FMH]
 gi|254208590|ref|ZP_04914939.1| NADH-quinone oxidoreductase, B subunit [Burkholderia mallei JHU]
 gi|81607694|sp|Q63QG0|NUOB2_BURPS RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName:
           Full=NADH dehydrogenase I subunit B 2; AltName:
           Full=NDH-1 subunit B 2
 gi|81684518|sp|Q62DE1|NUOB2_BURMA RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName:
           Full=NADH dehydrogenase I subunit B 2; AltName:
           Full=NDH-1 subunit B 2
 gi|218528073|sp|A1UWB1|NUOB2_BURMS RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName:
           Full=NADH dehydrogenase I subunit B 2; AltName:
           Full=NDH-1 subunit B 2
 gi|218528074|sp|A3NZQ8|NUOB2_BURP0 RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName:
           Full=NADH dehydrogenase I subunit B 2; AltName:
           Full=NDH-1 subunit B 2
 gi|218528076|sp|A3NE04|NUOB2_BURP6 RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName:
           Full=NADH dehydrogenase I subunit B 2; AltName:
           Full=NDH-1 subunit B 2
 gi|218528078|sp|A3MFR5|NUOB2_BURM7 RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName:
           Full=NADH dehydrogenase I subunit B 2; AltName:
           Full=NDH-1 subunit B 2
 gi|218528079|sp|A2RYJ4|NUOB2_BURM9 RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName:
           Full=NADH dehydrogenase I subunit B 2; AltName:
           Full=NDH-1 subunit B 2
 gi|52211086|emb|CAH37074.1| putative NADH dehydrogenase [Burkholderia pseudomallei K96243]
 gi|52423340|gb|AAU46910.1| NADH-quinone oxidoreductase, B subunit [Burkholderia mallei ATCC
           23344]
 gi|134245369|gb|EBA45462.1| putative NADH-quinone oxidoreductase, B subunit [Burkholderia
           pseudomallei 305]
 gi|147746299|gb|EDK53377.1| NADH-quinone oxidoreductase, B subunit [Burkholderia mallei FMH]
 gi|147751277|gb|EDK58345.1| NADH-quinone oxidoreductase, B subunit [Burkholderia mallei JHU]
 gi|160696864|gb|EDP86834.1| NADH-quinone oxidoreductase, B subunit [Burkholderia mallei ATCC
           10399]
 gi|169655291|gb|EDS87984.1| putative NADH-quinone oxidoreductase, B subunit [Burkholderia
           pseudomallei S13]
 gi|238520928|gb|EEP84384.1| NADH-quinone oxidoreductase chain b (nadh dehydrogenasei, chain b)
           (ndh-1, chain b) [Burkholderia mallei GB8 horse 4]
 gi|242140538|gb|EES26940.1| putative NADH-quinone oxidoreductase, B subunit [Burkholderia
           pseudomallei 1106b]
 gi|243060451|gb|EES42637.1| NADH-quinone oxidoreductase, B subunit [Burkholderia mallei PRL-20]
          Length = 167

 Score =  236 bits (602), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 107/145 (73%), Positives = 126/145 (86%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           +   GF+VT++D  +  A+  SL +MTFGLACCAVEMM A+  RYD++RFG  PRASPRQ
Sbjct: 8   LEKDGFIVTTLDAAMAAAQKNSLWYMTFGLACCAVEMMHAAGARYDMDRFGMIPRASPRQ 67

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
            D+MIVAGTLTNKMA A+RRVYDQM EPRYV+SMGSCANGGGYYHYSYSVVRGCDRIVPV
Sbjct: 68  CDLMIVAGTLTNKMAPAMRRVYDQMAEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPV 127

Query: 153 DIYVPGCPPTAEALIYGILLLQKKI 177
           D+YVPGCPPTAEAL+YG++ LQ+K+
Sbjct: 128 DVYVPGCPPTAEALVYGLMQLQRKV 152


>gi|289614329|emb|CBI58839.1| unnamed protein product [Sordaria macrospora]
          Length = 230

 Score =  236 bits (602), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 112/153 (73%), Positives = 129/153 (84%), Gaps = 3/153 (1%)

Query: 29  ISSEITHKG---FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA 85
           ++S+   KG   + +T++D +V WAR  SL  MTFGLACCAVEMM  S PRYD +R G  
Sbjct: 67  LASQEGTKGAVQYALTTLDSIVNWARQSSLWPMTFGLACCAVEMMHLSTPRYDQDRLGII 126

Query: 86  PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRG 145
            RASPRQSDVMIVAGTLTNKMA ALR+VYDQMP+PR+VISMGSCANGGGYYHYSYSVVRG
Sbjct: 127 FRASPRQSDVMIVAGTLTNKMAPALRQVYDQMPDPRWVISMGSCANGGGYYHYSYSVVRG 186

Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           CDRIVPVD+YVPGCPPT+EAL+YGI  LQ+K+R
Sbjct: 187 CDRIVPVDVYVPGCPPTSEALMYGIFQLQRKMR 219


>gi|62263125|gb|AAX78129.1| unknown protein [synthetic construct]
          Length = 193

 Score =  236 bits (601), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 111/145 (76%), Positives = 123/145 (84%)

Query: 35  HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSD 94
           +KGF+  S D L+ W RTGSL  +T GLACCAVEMM A   RYDL+RFG   R SPRQSD
Sbjct: 33  NKGFITASADALINWVRTGSLWPVTTGLACCAVEMMHAGAARYDLDRFGIVFRPSPRQSD 92

Query: 95  VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154
           V+IVAGTL NKMA ALR+VYDQMP+P++VISMGSCANGGGYYHYSYSVVRGCDRIVPVDI
Sbjct: 93  VLIVAGTLCNKMAPALRQVYDQMPDPKWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 152

Query: 155 YVPGCPPTAEALIYGILLLQKKIRR 179
           YVPGCPPTAEAL+YGI+ LQ KI R
Sbjct: 153 YVPGCPPTAEALVYGIIQLQNKIIR 177


>gi|56707212|ref|YP_169108.1| NADH dehydrogenase subunit B [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|89257089|ref|YP_514451.1| NADH dehydrogenase subunit B [Francisella tularensis subsp.
           holarctica LVS]
 gi|110669682|ref|YP_666239.1| NADH dehydrogenase subunit B [Francisella tularensis subsp.
           tularensis FSC198]
 gi|115315446|ref|YP_764169.1| NADH dehydrogenase subunit B [Francisella tularensis subsp.
           holarctica OSU18]
 gi|118498240|ref|YP_899290.1| NADH dehydrogenase subunit B [Francisella tularensis subsp.
           novicida U112]
 gi|134301247|ref|YP_001121215.1| NADH dehydrogenase subunit B [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|156503303|ref|YP_001429368.1| NADH dehydrogenase subunit B [Francisella tularensis subsp.
           holarctica FTNF002-00]
 gi|167009481|ref|ZP_02274412.1| NADH-quinone oxidoreductase, b subunit family protein [Francisella
           tularensis subsp. holarctica FSC200]
 gi|187930989|ref|YP_001890973.1| NADH dehydrogenase subunit B [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|194324424|ref|ZP_03058197.1| NADH-quinone oxidoreductase, b subunit family [Francisella
           tularensis subsp. novicida FTE]
 gi|208780267|ref|ZP_03247609.1| NADH-quinone oxidoreductase, b subunit family [Francisella novicida
           FTG]
 gi|224456273|ref|ZP_03664746.1| NADH dehydrogenase subunit B [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|241667716|ref|ZP_04755294.1| NADH dehydrogenase subunit B [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254368325|ref|ZP_04984343.1| NADH dehydrogenase I, B subunit [Francisella tularensis subsp.
           holarctica 257]
 gi|254368966|ref|ZP_04984979.1| NADH-quinone oxidoreductase chain B 1 [Francisella tularensis
           subsp. holarctica FSC022]
 gi|254371428|ref|ZP_04987429.1| hypothetical protein [Francisella tularensis subsp. tularensis
           FSC033]
 gi|254373581|ref|ZP_04989067.1| NADH dehydrogenase I [Francisella tularensis subsp. novicida
           GA99-3549]
 gi|254375048|ref|ZP_04990528.1| hypothetical protein FTDG_01236 [Francisella novicida GA99-3548]
 gi|254874050|ref|ZP_05246760.1| NADH-quinone oxidoreductase chain B 1 [Francisella tularensis
           subsp. tularensis MA00-2987]
 gi|254876260|ref|ZP_05248970.1| NADH-quinone oxidoreductase subunit B [Francisella philomiragia
           subsp. philomiragia ATCC 25015]
 gi|290952990|ref|ZP_06557611.1| NADH dehydrogenase subunit B [Francisella tularensis subsp.
           holarctica URFT1]
 gi|295313810|ref|ZP_06804383.1| NADH dehydrogenase subunit B [Francisella tularensis subsp.
           holarctica URFT1]
 gi|81598108|sp|Q5NIN4|NUOB_FRATT RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|122324569|sp|Q0BK52|NUOB_FRATO RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|122500210|sp|Q2A1F1|NUOB_FRATH RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|123169705|sp|Q14K37|NUOB_FRAT1 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|238065148|sp|A7NEK9|NUOB_FRATF RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|238065149|sp|A0Q8H1|NUOB_FRATN RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|238065150|sp|A4IVZ3|NUOB_FRATW RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|254767793|sp|B2SEV0|NUOB_FRATM RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|54114093|gb|AAV29680.1| NT02FT1737 [synthetic construct]
 gi|56603704|emb|CAG44665.1| NADH dehydrogenase I, B subunit [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|89144920|emb|CAJ80268.1| NADH dehydrogenase I, B subunit [Francisella tularensis subsp.
           holarctica LVS]
 gi|110320015|emb|CAL08048.1| NADH dehydrogenase I, B subunit [Francisella tularensis subsp.
           tularensis FSC198]
 gi|115130345|gb|ABI83532.1| NADH dehydrogenase (ubiquinone) [Francisella tularensis subsp.
           holarctica OSU18]
 gi|118424146|gb|ABK90536.1| NADH dehydrogenase I, B subunit [Francisella novicida U112]
 gi|134049024|gb|ABO46095.1| NADH dehydrogenase I subunit B [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|134254133|gb|EBA53227.1| NADH dehydrogenase I, B subunit [Francisella tularensis subsp.
           holarctica 257]
 gi|151569667|gb|EDN35321.1| hypothetical protein FTBG_01489 [Francisella tularensis subsp.
           tularensis FSC033]
 gi|151571305|gb|EDN36959.1| NADH dehydrogenase I [Francisella novicida GA99-3549]
 gi|151572766|gb|EDN38420.1| hypothetical protein FTDG_01236 [Francisella novicida GA99-3548]
 gi|156253906|gb|ABU62412.1| NADH-quinone oxidoreductase, subunit B [Francisella tularensis
           subsp. holarctica FTNF002-00]
 gi|157121887|gb|EDO66057.1| NADH-quinone oxidoreductase chain B 1 [Francisella tularensis
           subsp. holarctica FSC022]
 gi|187711898|gb|ACD30195.1| NADH dehydrogenase I, B subunit [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|194321489|gb|EDX18974.1| NADH-quinone oxidoreductase, b subunit family [Francisella
           tularensis subsp. novicida FTE]
 gi|208743916|gb|EDZ90218.1| NADH-quinone oxidoreductase, b subunit family [Francisella novicida
           FTG]
 gi|254840049|gb|EET18485.1| NADH-quinone oxidoreductase chain B 1 [Francisella tularensis
           subsp. tularensis MA00-2987]
 gi|254842281|gb|EET20695.1| NADH-quinone oxidoreductase subunit B [Francisella philomiragia
           subsp. philomiragia ATCC 25015]
 gi|282158320|gb|ADA77711.1| NADH dehydrogenase subunit B [Francisella tularensis subsp.
           tularensis NE061598]
 gi|332184795|gb|AEE27049.1| NADH-ubiquinone oxidoreductase chain B [Francisella cf. novicida
           3523]
 gi|332678976|gb|AEE88105.1| NADH-ubiquinone oxidoreductase chain B [Francisella cf. novicida
           Fx1]
          Length = 158

 Score =  236 bits (601), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 111/145 (76%), Positives = 123/145 (84%)

Query: 35  HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSD 94
           +KGF+  S D L+ W RTGSL  +T GLACCAVEMM A   RYDL+RFG   R SPRQSD
Sbjct: 7   NKGFITASADALINWVRTGSLWPVTTGLACCAVEMMHAGAARYDLDRFGIVFRPSPRQSD 66

Query: 95  VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154
           V+IVAGTL NKMA ALR+VYDQMP+P++VISMGSCANGGGYYHYSYSVVRGCDRIVPVDI
Sbjct: 67  VLIVAGTLCNKMAPALRQVYDQMPDPKWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 126

Query: 155 YVPGCPPTAEALIYGILLLQKKIRR 179
           YVPGCPPTAEAL+YGI+ LQ KI R
Sbjct: 127 YVPGCPPTAEALVYGIIQLQNKIIR 151


>gi|221068611|ref|ZP_03544716.1| NADH-quinone oxidoreductase, B subunit [Comamonas testosteroni
           KF-1]
 gi|264677199|ref|YP_003277105.1| NADH-quinone oxidoreductase, B subunit [Comamonas testosteroni
           CNB-2]
 gi|299530743|ref|ZP_07044158.1| NADH dehydrogenase subunit B [Comamonas testosteroni S44]
 gi|220713634|gb|EED69002.1| NADH-quinone oxidoreductase, B subunit [Comamonas testosteroni
           KF-1]
 gi|262207711|gb|ACY31809.1| NADH-quinone oxidoreductase, B subunit [Comamonas testosteroni
           CNB-2]
 gi|298721259|gb|EFI62201.1| NADH dehydrogenase subunit B [Comamonas testosteroni S44]
          Length = 159

 Score =  236 bits (601), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 112/152 (73%), Positives = 128/152 (84%), Gaps = 1/152 (0%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPR 91
           +  +GF+ TS D +V WA+TGS+  MTFGLACCAVEMM A+  RYD+ RFG    RASPR
Sbjct: 5   VMKEGFVTTSYDTVVNWAKTGSIWPMTFGLACCAVEMMHAAAARYDIGRFGSEVFRASPR 64

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
            SD+MIVAGTL NKMA A+R+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVP
Sbjct: 65  HSDLMIVAGTLCNKMAPAMRKVYDQMSEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVP 124

Query: 152 VDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           VD+YVPGCPPTAEALIYGI+ LQ+KIRR   +
Sbjct: 125 VDVYVPGCPPTAEALIYGIIQLQQKIRRTHTI 156


>gi|195341209|ref|XP_002037203.1| GM12792 [Drosophila sechellia]
 gi|194131319|gb|EDW53362.1| GM12792 [Drosophila sechellia]
          Length = 204

 Score =  236 bits (601), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 109/155 (70%), Positives = 129/155 (83%)

Query: 30  SSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS 89
            ++ T   +    +D L+ W R GSL  +TFGLACCAVEMM  + PRYD++R+G   RAS
Sbjct: 45  QNQKTWGEWTCARLDDLLNWGRKGSLWPLTFGLACCAVEMMHIAAPRYDMDRYGVVFRAS 104

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQ+DV+IVAGTLTNKMA A R+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRI
Sbjct: 105 PRQADVLIVAGTLTNKMAPAFRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRI 164

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           VPVDIYVPGCPPTAEAL+YGIL LQKK++R+  ++
Sbjct: 165 VPVDIYVPGCPPTAEALMYGILQLQKKVKRMRTLQ 199


>gi|302753456|ref|XP_002960152.1| hypothetical protein SELMODRAFT_270168 [Selaginella moellendorffii]
 gi|302804466|ref|XP_002983985.1| hypothetical protein SELMODRAFT_156186 [Selaginella moellendorffii]
 gi|300148337|gb|EFJ14997.1| hypothetical protein SELMODRAFT_156186 [Selaginella moellendorffii]
 gi|300171091|gb|EFJ37691.1| hypothetical protein SELMODRAFT_270168 [Selaginella moellendorffii]
          Length = 200

 Score =  236 bits (601), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 108/143 (75%), Positives = 123/143 (86%)

Query: 37  GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVM 96
            F+++ +D ++ + R GS+  MTFGLACCAVEMM     RYDL+RFG   R SPRQSD M
Sbjct: 48  NFVISKLDSVINYVRAGSIWPMTFGLACCAVEMMHTGAARYDLDRFGMIFRPSPRQSDCM 107

Query: 97  IVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV 156
           IVAGTLTNKMA ALRRVYDQMPEPR+V+SMGSCANGGGYYHYSY+VVRGCDRIVPVDIYV
Sbjct: 108 IVAGTLTNKMAPALRRVYDQMPEPRWVVSMGSCANGGGYYHYSYAVVRGCDRIVPVDIYV 167

Query: 157 PGCPPTAEALIYGILLLQKKIRR 179
           PGCPPTAEAL+YG+L LQKKI+R
Sbjct: 168 PGCPPTAEALLYGLLQLQKKIKR 190


>gi|291042878|ref|ZP_06568619.1| NADH-quinone oxidoreductase subunit B [Neisseria gonorrhoeae DGI2]
 gi|291013312|gb|EFE05278.1| NADH-quinone oxidoreductase subunit B [Neisseria gonorrhoeae DGI2]
          Length = 197

 Score =  236 bits (601), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 109/151 (72%), Positives = 128/151 (84%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           +  KGF+ TS D ++ + RTGSL  +TFGLACCAVEMM A M RYDL+RFG   R SPRQ
Sbjct: 43  VLKKGFITTSADTVLNYMRTGSLWPVTFGLACCAVEMMHAGMARYDLDRFGIIFRPSPRQ 102

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           +D+MIVAGTLTNKMA ALRRVYDQ+ EPR+V+SMGSCANGGGYYHYSYSVVRG DR+VPV
Sbjct: 103 ADLMIVAGTLTNKMAPALRRVYDQLAEPRWVLSMGSCANGGGYYHYSYSVVRGADRVVPV 162

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           D+YVPGCPPTAEALIYG++ LQ+KI+R   +
Sbjct: 163 DVYVPGCPPTAEALIYGLIQLQQKIKRTSTI 193


>gi|298370383|ref|ZP_06981699.1| NADH dehydrogenase (ubiquinone), B subunit [Neisseria sp. oral
           taxon 014 str. F0314]
 gi|298281843|gb|EFI23332.1| NADH dehydrogenase (ubiquinone), B subunit [Neisseria sp. oral
           taxon 014 str. F0314]
          Length = 197

 Score =  236 bits (601), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 109/151 (72%), Positives = 128/151 (84%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           +  KGF+ TS D ++ + RTGSL  +TFGLACCAVEMM A M RYDL+RFG   R SPRQ
Sbjct: 43  VLKKGFITTSADTVLNYMRTGSLWPVTFGLACCAVEMMHAGMARYDLDRFGIIFRPSPRQ 102

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           +D+MIVAGTLTNKMA ALRRVYDQ+ EPR+V+SMGSCANGGGYYHYSYSVVRG DR+VPV
Sbjct: 103 ADLMIVAGTLTNKMAPALRRVYDQLAEPRWVLSMGSCANGGGYYHYSYSVVRGADRVVPV 162

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           D+YVPGCPPTAEALIYG++ LQ+KI+R   +
Sbjct: 163 DVYVPGCPPTAEALIYGLMQLQQKIKRTSTI 193


>gi|167627154|ref|YP_001677654.1| NADH dehydrogenase subunit B [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|238065146|sp|B0TWP5|NUOB_FRAP2 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|167597155|gb|ABZ87153.1| NADH dehydrogenase (quinone) [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
          Length = 158

 Score =  236 bits (601), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 110/145 (75%), Positives = 123/145 (84%)

Query: 35  HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSD 94
           +KGF+  S D L+ W RTGSL  +T GLACCAVEMM A   RYDL+RFG   R SPRQSD
Sbjct: 7   NKGFITASADALINWVRTGSLWPVTTGLACCAVEMMHAGAARYDLDRFGIVFRPSPRQSD 66

Query: 95  VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154
           V+IVAGTL NKMA ALR+VYDQMP+P++VISMGSCANGGGYYHYSYSVVRGCDRI+PVDI
Sbjct: 67  VLIVAGTLCNKMAPALRQVYDQMPDPKWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDI 126

Query: 155 YVPGCPPTAEALIYGILLLQKKIRR 179
           YVPGCPPTAEAL+YGI+ LQ KI R
Sbjct: 127 YVPGCPPTAEALVYGIIQLQNKIIR 151


>gi|322711383|gb|EFZ02956.1| NADH-ubiquinone oxidoreductase 20 kD subunit [Metarhizium
           anisopliae ARSEF 23]
          Length = 316

 Score =  235 bits (600), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 113/153 (73%), Positives = 127/153 (83%), Gaps = 3/153 (1%)

Query: 29  ISSEITHKG---FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA 85
           + SE   KG   + +T++D +  WAR  SL  MTFGLACCAVEMM  S PRYD +R G  
Sbjct: 153 LPSEEGTKGVVQYALTTLDVIANWARQSSLWPMTFGLACCAVEMMHLSTPRYDQDRLGII 212

Query: 86  PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRG 145
            RASPRQSDVMIVAGTLTNKMA ALR+VYDQMP+PR+VISMGSCANGGGYYHYSYSVVRG
Sbjct: 213 FRASPRQSDVMIVAGTLTNKMAPALRQVYDQMPDPRWVISMGSCANGGGYYHYSYSVVRG 272

Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           CDRIVPVDIYVPGCPPT+EAL+YGI  LQ+K+R
Sbjct: 273 CDRIVPVDIYVPGCPPTSEALMYGIFQLQRKMR 305


>gi|59802071|ref|YP_208783.1| NADH dehydrogenase subunit B [Neisseria gonorrhoeae FA 1090]
 gi|240017450|ref|ZP_04723990.1| NADH dehydrogenase subunit B [Neisseria gonorrhoeae FA6140]
 gi|240129042|ref|ZP_04741703.1| NADH dehydrogenase subunit B [Neisseria gonorrhoeae SK-93-1035]
 gi|268687420|ref|ZP_06154282.1| NADH dehydrogenase subunit I B [Neisseria gonorrhoeae SK-93-1035]
 gi|293398111|ref|ZP_06642316.1| NADH-quinone oxidoreductase subunit B [Neisseria gonorrhoeae F62]
 gi|75355476|sp|Q5F616|NUOB_NEIG1 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|59718966|gb|AAW90371.1| putative NADH dehydrogenase I chain B [Neisseria gonorrhoeae FA
           1090]
 gi|268627704|gb|EEZ60104.1| NADH dehydrogenase subunit I B [Neisseria gonorrhoeae SK-93-1035]
 gi|291611374|gb|EFF40444.1| NADH-quinone oxidoreductase subunit B [Neisseria gonorrhoeae F62]
          Length = 160

 Score =  235 bits (600), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 109/151 (72%), Positives = 127/151 (84%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           +  KGF+ TS D ++   RTGSL  +TFGLACCAVEMM A M RYDL+RFG   R SPRQ
Sbjct: 6   VLKKGFITTSADTVLNHMRTGSLWPVTFGLACCAVEMMHAGMARYDLDRFGIIFRPSPRQ 65

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           +D+MIVAGTLTNKMA ALRRVYDQ+ EPR+V+SMGSCANGGGYYHYSYSVVRG DR+VPV
Sbjct: 66  ADLMIVAGTLTNKMAPALRRVYDQLAEPRWVLSMGSCANGGGYYHYSYSVVRGADRVVPV 125

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           D+YVPGCPPTAEALIYG++ LQ+KI+R   +
Sbjct: 126 DVYVPGCPPTAEALIYGLIQLQQKIKRTSTI 156


>gi|194906298|ref|XP_001981347.1| GG11669 [Drosophila erecta]
 gi|190655985|gb|EDV53217.1| GG11669 [Drosophila erecta]
          Length = 212

 Score =  235 bits (600), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 109/142 (76%), Positives = 125/142 (88%)

Query: 43  VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL 102
           +D L+ W R GSL  MTFGLACCAVEMM  + PRYD++R+G   RASPRQ+DV+IVAGTL
Sbjct: 66  LDDLLNWGRKGSLWPMTFGLACCAVEMMHIAAPRYDMDRYGVVFRASPRQADVIIVAGTL 125

Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162
           TNKMA A R+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT
Sbjct: 126 TNKMAPAFRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 185

Query: 163 AEALIYGILLLQKKIRRVGNVK 184
           AEAL+YGIL LQKK++R+  ++
Sbjct: 186 AEALMYGILQLQKKVKRMRTLQ 207


>gi|321259133|ref|XP_003194287.1| hypothetical protein CGB_E3580W [Cryptococcus gattii WM276]
 gi|317460758|gb|ADV22500.1| Conserved hypothetical protein [Cryptococcus gattii WM276]
          Length = 229

 Score =  235 bits (600), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 109/155 (70%), Positives = 131/155 (84%), Gaps = 2/155 (1%)

Query: 27  SRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF 84
           +++S E    G  ++++++D++V W R GS+  MTFGLACCAVEMM  +  RYD +R G 
Sbjct: 65  NQLSLETPRNGAEYVLSTLDKIVNWGRQGSMWPMTFGLACCAVEMMHMAAARYDQDRLGV 124

Query: 85  APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR 144
             RASPRQSD+MIVAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSY+VVR
Sbjct: 125 VFRASPRQSDIMIVAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYAVVR 184

Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           GCDRIVPVDIYVPGCPPTAEAL+YG+L L +K+RR
Sbjct: 185 GCDRIVPVDIYVPGCPPTAEALLYGMLQLMRKMRR 219


>gi|88607775|ref|YP_505115.1| NADH dehydrogenase subunit B [Anaplasma phagocytophilum HZ]
 gi|123495312|sp|Q2GKI6|NUOB_ANAPZ RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|88598838|gb|ABD44308.1| NADH dehydrogenase I, B subunit [Anaplasma phagocytophilum HZ]
          Length = 174

 Score =  235 bits (600), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 112/151 (74%), Positives = 130/151 (86%), Gaps = 4/151 (2%)

Query: 36  KGFLVTS----VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPR 91
           +GF+VT     +++++ WAR+GSL  MTFGLACCAVEMM  +  RYDL+R+G   RASPR
Sbjct: 19  QGFVVTQFSDLIERVLKWARSGSLWPMTFGLACCAVEMMHTAASRYDLDRYGIMFRASPR 78

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
           Q+DVMIVAGTLTNKMA ALRRVYDQM +P+YVISMGSCANGGGYYHYSYSVVRGCDR+VP
Sbjct: 79  QADVMIVAGTLTNKMAPALRRVYDQMADPKYVISMGSCANGGGYYHYSYSVVRGCDRVVP 138

Query: 152 VDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
           VDIYVPGCPPTAEAL+YG+L LQ+KI R G 
Sbjct: 139 VDIYVPGCPPTAEALLYGLLCLQQKILRNGQ 169


>gi|24651058|ref|NP_651698.1| CG2014 [Drosophila melanogaster]
 gi|7301791|gb|AAF56901.1| CG2014 [Drosophila melanogaster]
          Length = 212

 Score =  235 bits (600), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 108/154 (70%), Positives = 129/154 (83%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP 90
           ++ T   +    +D L+ W R GSL  +TFGLACCAVEMM  + PRYD++R+G   RASP
Sbjct: 54  NQKTWGEWTCARLDDLLNWGRKGSLWPLTFGLACCAVEMMHIAAPRYDMDRYGVVFRASP 113

Query: 91  RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150
           RQ+DV+IVAGTLTNKMA A R++YDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRIV
Sbjct: 114 RQADVLIVAGTLTNKMAPAFRKIYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIV 173

Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           PVDIYVPGCPPTAEAL+YGIL LQKK++R+  ++
Sbjct: 174 PVDIYVPGCPPTAEALMYGILQLQKKVKRMRTLQ 207


>gi|195574757|ref|XP_002105350.1| GD21440 [Drosophila simulans]
 gi|194201277|gb|EDX14853.1| GD21440 [Drosophila simulans]
          Length = 212

 Score =  235 bits (600), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 109/154 (70%), Positives = 129/154 (83%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP 90
           ++ T   +    +D L+ W R GSL  +TFGLACCAVEMM  + PRYD++R+G   RASP
Sbjct: 54  NQKTWGEWTCARLDDLLNWGRKGSLWPLTFGLACCAVEMMHIAAPRYDMDRYGVVFRASP 113

Query: 91  RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150
           RQ+DV+IVAGTLTNKMA A R+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRIV
Sbjct: 114 RQADVLIVAGTLTNKMAPAFRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIV 173

Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           PVDIYVPGCPPTAEAL+YGIL LQKK++R+  ++
Sbjct: 174 PVDIYVPGCPPTAEALMYGILQLQKKVKRMRTLQ 207


>gi|66770743|gb|AAY54683.1| IP08160p [Drosophila melanogaster]
          Length = 213

 Score =  235 bits (600), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 108/154 (70%), Positives = 129/154 (83%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP 90
           ++ T   +    +D L+ W R GSL  +TFGLACCAVEMM  + PRYD++R+G   RASP
Sbjct: 55  NQKTWGEWTCARLDDLLNWGRKGSLWPLTFGLACCAVEMMHIAAPRYDMDRYGVVFRASP 114

Query: 91  RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150
           RQ+DV+IVAGTLTNKMA A R++YDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRIV
Sbjct: 115 RQADVLIVAGTLTNKMAPAFRKIYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIV 174

Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           PVDIYVPGCPPTAEAL+YGIL LQKK++R+  ++
Sbjct: 175 PVDIYVPGCPPTAEALMYGILQLQKKVKRMRTLQ 208


>gi|134079540|emb|CAK97016.1| unnamed protein product [Aspergillus niger]
          Length = 219

 Score =  235 bits (599), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 106/142 (74%), Positives = 123/142 (86%)

Query: 39  LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIV 98
           ++T+ DQ+V WAR GSL  ++FGLACCA+EMM  SMPRYD +R G   RASPRQSDVMIV
Sbjct: 69  VLTTFDQIVNWARQGSLWPLSFGLACCAIEMMHVSMPRYDQDRLGIIFRASPRQSDVMIV 128

Query: 99  AGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPG 158
           AGT+TNKMA ALR+ YDQMPEPR+VISMGSCANGGGYYHYSYS+VRG DRIVPVD+Y+PG
Sbjct: 129 AGTVTNKMAPALRQCYDQMPEPRWVISMGSCANGGGYYHYSYSIVRGVDRIVPVDVYIPG 188

Query: 159 CPPTAEALIYGILLLQKKIRRV 180
           CPPTAEA +YG+  LQKKI+R 
Sbjct: 189 CPPTAEATLYGVFQLQKKIKRT 210


>gi|310800125|gb|EFQ35018.1| NADH-quinone oxidoreductase [Glomerella graminicola M1.001]
          Length = 201

 Score =  235 bits (599), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 109/141 (77%), Positives = 122/141 (86%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           + +TS+D +  WAR  SL  MTFGLACCAVEMM  S PRYD +R G   RASPRQSDVMI
Sbjct: 50  YALTSLDVITNWARQSSLWPMTFGLACCAVEMMHLSTPRYDQDRLGIIFRASPRQSDVMI 109

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDR+VPVD+YVP
Sbjct: 110 VAGTLTNKMAPALRQVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRVVPVDVYVP 169

Query: 158 GCPPTAEALIYGILLLQKKIR 178
           GCPPT+EAL+YGI  LQ+K+R
Sbjct: 170 GCPPTSEALMYGIFQLQRKMR 190


>gi|195503274|ref|XP_002098583.1| GE23857 [Drosophila yakuba]
 gi|194184684|gb|EDW98295.1| GE23857 [Drosophila yakuba]
          Length = 212

 Score =  234 bits (598), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 109/154 (70%), Positives = 128/154 (83%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP 90
            + T   +    +D L+ W R GSL  +TFGLACCAVEMM  + PRYD++R+G   RASP
Sbjct: 54  DQKTWGEWTCARLDDLLNWGRKGSLWPLTFGLACCAVEMMHIAAPRYDMDRYGVVFRASP 113

Query: 91  RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150
           RQ+DV+IVAGTLTNKMA A R+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRIV
Sbjct: 114 RQADVLIVAGTLTNKMAPAFRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIV 173

Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           PVDIYVPGCPPTAEAL+YGIL LQKK++R+  ++
Sbjct: 174 PVDIYVPGCPPTAEALMYGILQLQKKVKRMRTLQ 207


>gi|268370120|ref|NP_001161241.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 7,
           mitochondrial [Nasonia vitripennis]
          Length = 217

 Score =  234 bits (598), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 103/143 (72%), Positives = 125/143 (87%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           + +  +D L+ W R GS+  +TFGLACCAVEMM  + PRYD++RFG   RASPR +DV+I
Sbjct: 66  YAMARLDDLLNWGRKGSMWPLTFGLACCAVEMMHIAAPRYDMDRFGVVFRASPRHADVII 125

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGT+TNKMA ALR+VYDQMP+P++VISMGSCANGGGYYHYSYSVVRGCDRI+PVDIYVP
Sbjct: 126 VAGTVTNKMAPALRKVYDQMPDPKWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVP 185

Query: 158 GCPPTAEALIYGILLLQKKIRRV 180
           GCPPTAEAL+YG+L LQKK++R+
Sbjct: 186 GCPPTAEALLYGVLQLQKKVKRM 208


>gi|289741217|gb|ADD19356.1| NADH-ubiquinone oxidoreductase NUFS7/PSST/20 kDa subunit [Glossina
           morsitans morsitans]
          Length = 220

 Score =  234 bits (598), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 105/147 (71%), Positives = 127/147 (86%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           + +  +D L+ W R  S+  +TFGLACCAVEMM  + PRYD++R+G   RASPRQ+DV+I
Sbjct: 69  WTMARLDDLLNWGRKSSIWPLTFGLACCAVEMMHIAAPRYDMDRYGVVFRASPRQADVII 128

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRI+PVDIYVP
Sbjct: 129 VAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVP 188

Query: 158 GCPPTAEALIYGILLLQKKIRRVGNVK 184
           GCPPTAEAL+YG+L LQKK++R+  ++
Sbjct: 189 GCPPTAEALMYGVLQLQKKVKRMKTLQ 215


>gi|302679558|ref|XP_003029461.1| hypothetical protein SCHCODRAFT_69693 [Schizophyllum commune H4-8]
 gi|300103151|gb|EFI94558.1| hypothetical protein SCHCODRAFT_69693 [Schizophyllum commune H4-8]
          Length = 236

 Score =  234 bits (598), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 107/170 (62%), Positives = 133/170 (78%)

Query: 10  IISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEM 69
           +  GQS  ++    ++   + +      +++ + D++  WAR  S+  +TFGLACCAVEM
Sbjct: 57  VEKGQSFRAVVNAQSNQHSLETPQNKAEYVLATFDKIANWARQSSMWPVTFGLACCAVEM 116

Query: 70  MQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSC 129
           M  +  RYD +R G   RASPRQS++MIVAGTLTNKMA ALR+VYDQMPEPR+V+SMGSC
Sbjct: 117 MHMAAARYDQDRLGIIFRASPRQSEIMIVAGTLTNKMAPALRKVYDQMPEPRWVVSMGSC 176

Query: 130 ANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           ANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG+L LQ+K+RR
Sbjct: 177 ANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGMLQLQRKMRR 226


>gi|332968234|gb|EGK07311.1| NADH-quinone oxidoreductase subunit B [Kingella kingae ATCC 23330]
          Length = 159

 Score =  234 bits (598), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 109/147 (74%), Positives = 126/147 (85%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           + +KGF+  S D ++ + RTGSL  +TFGLACCAVEMM A M RYDL+RFG   R SPRQ
Sbjct: 6   VLNKGFVTASADTVLNYVRTGSLWPVTFGLACCAVEMMHAGMARYDLDRFGIIFRPSPRQ 65

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           SD+MIVAGTLTNKMA ALRRVYDQM EPR+V+SMGSCANGGGYYHYSYSVVRG DR+VPV
Sbjct: 66  SDLMIVAGTLTNKMAPALRRVYDQMAEPRWVLSMGSCANGGGYYHYSYSVVRGADRVVPV 125

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179
           D+YVPGCPPTAEAL+YG++ LQ KI+R
Sbjct: 126 DVYVPGCPPTAEALLYGLIQLQGKIKR 152


>gi|302912562|ref|XP_003050728.1| hypothetical protein NECHADRAFT_60986 [Nectria haematococca mpVI
           77-13-4]
 gi|256731666|gb|EEU45015.1| hypothetical protein NECHADRAFT_60986 [Nectria haematococca mpVI
           77-13-4]
          Length = 223

 Score =  234 bits (598), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 107/141 (75%), Positives = 122/141 (86%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           + +T++D +  WAR  SL  MTFGLACCAVEMM  S PRYD +R G   RASPRQSDVMI
Sbjct: 72  YALTTLDVIANWARQSSLWPMTFGLACCAVEMMHLSTPRYDQDRLGIIFRASPRQSDVMI 131

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGTLTNKMA ALR+VYDQMP+PR+V+SMGSCANGGGYYHYSYSVVRGCDRIVPVD+YVP
Sbjct: 132 VAGTLTNKMAPALRQVYDQMPDPRWVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVP 191

Query: 158 GCPPTAEALIYGILLLQKKIR 178
           GCPPT+EAL+YGI  LQ+K+R
Sbjct: 192 GCPPTSEALMYGIFQLQRKMR 212


>gi|83951739|ref|ZP_00960471.1| NADH dehydrogenase beta subunit [Roseovarius nubinhibens ISM]
 gi|83836745|gb|EAP76042.1| NADH dehydrogenase beta subunit [Roseovarius nubinhibens ISM]
          Length = 127

 Score =  234 bits (597), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 111/126 (88%), Positives = 117/126 (92%), Gaps = 1/126 (0%)

Query: 58  MTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQM 117
           MTF + CCAVEMM  +MPRYD ERFGFAPRASPRQSDVMIVAGTLTNKMA ALR+VYDQM
Sbjct: 1   MTF-VCCCAVEMMHVAMPRYDAERFGFAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQM 59

Query: 118 PEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
           PEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQ+KI
Sbjct: 60  PEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQRKI 119

Query: 178 RRVGNV 183
           RR G +
Sbjct: 120 RRTGTI 125


>gi|328705672|ref|XP_001949063.2| PREDICTED: probable NADH dehydrogenase [ubiquinone] iron-sulfur
           protein 7, mitochondrial-like isoform 1 [Acyrthosiphon
           pisum]
 gi|328705674|ref|XP_003242871.1| PREDICTED: probable NADH dehydrogenase [ubiquinone] iron-sulfur
           protein 7, mitochondrial-like isoform 2 [Acyrthosiphon
           pisum]
 gi|239788027|dbj|BAH70710.1| ACYPI008241 [Acyrthosiphon pisum]
          Length = 218

 Score =  234 bits (597), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 109/169 (64%), Positives = 132/169 (78%)

Query: 12  SGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQ 71
           + Q +   EK    +S          + V  +D ++ W R  SL  +TFGLACCAVEMM 
Sbjct: 41  ASQDTNIEEKPYRPYSPFQKTNNMAEYAVARLDDVLNWGRKHSLWPLTFGLACCAVEMMH 100

Query: 72  ASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCAN 131
            + PRYD++R+G   RASPRQ+D++IVAGTLTNKMA ALRRVYDQMP+P++VISMGSCAN
Sbjct: 101 IAAPRYDMDRYGVVFRASPRQADLIIVAGTLTNKMAPALRRVYDQMPDPKWVISMGSCAN 160

Query: 132 GGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           GGGYYHYSYSVVRGCDR++PVDIYVPGCPPTAEAL+YGIL LQKKI+R+
Sbjct: 161 GGGYYHYSYSVVRGCDRVIPVDIYVPGCPPTAEALMYGILQLQKKIKRM 209


>gi|71023639|ref|XP_762049.1| hypothetical protein UM05902.1 [Ustilago maydis 521]
 gi|46101614|gb|EAK86847.1| hypothetical protein UM05902.1 [Ustilago maydis 521]
          Length = 228

 Score =  234 bits (597), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 110/155 (70%), Positives = 127/155 (81%), Gaps = 2/155 (1%)

Query: 27  SRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF 84
           +++S E    G  ++++S+D++  WAR  S   MTFGLACCAVEMM  +  RYD +R G 
Sbjct: 64  NQLSLETPKNGVEYVLSSMDKMANWARQSSFWPMTFGLACCAVEMMHVATARYDQDRLGV 123

Query: 85  APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR 144
             RASPRQSD MIVAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVR
Sbjct: 124 VFRASPRQSDCMIVAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVR 183

Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           GCDRIVPVD+YVPGCPPTAEAL+YG L L +KIRR
Sbjct: 184 GCDRIVPVDLYVPGCPPTAEALLYGFLQLHRKIRR 218


>gi|149242844|ref|XP_001526472.1| NADH-ubiquinone oxidoreductase 20 kDa subunit [Lodderomyces
           elongisporus NRRL YB-4239]
 gi|146450595|gb|EDK44851.1| NADH-ubiquinone oxidoreductase 20 kDa subunit [Lodderomyces
           elongisporus NRRL YB-4239]
          Length = 224

 Score =  234 bits (597), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 111/179 (62%), Positives = 133/179 (74%), Gaps = 2/179 (1%)

Query: 4   TTVNQKIISGQSSCSLEKVDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFG 61
           T V  K        + +++  DF  +S +       + +TS+D +  WAR  S   +TFG
Sbjct: 37  TPVASKRYVSSKELTPKELPTDFPLMSQKTASSAVDYALTSLDTIANWARKSSFWPVTFG 96

Query: 62  LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPR 121
           LACCAVEMM  S PRYD +R G   RASPRQSD+MIVAGTLTNKMA ALR+VYDQMP+P+
Sbjct: 97  LACCAVEMMHVSAPRYDQDRLGIIFRASPRQSDIMIVAGTLTNKMAPALRQVYDQMPDPK 156

Query: 122 YVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           +VISMGSCANGGGYYHYSYSVVRGCDR+VPVDIYVPGCPPTAEAL+YG+  LQKK+ + 
Sbjct: 157 WVISMGSCANGGGYYHYSYSVVRGCDRVVPVDIYVPGCPPTAEALMYGVFQLQKKMMKT 215


>gi|91088057|ref|XP_967271.1| PREDICTED: similar to CG9172 CG9172-PA [Tribolium castaneum]
 gi|270012769|gb|EFA09217.1| hypothetical protein TcasGA2_TC006185 [Tribolium castaneum]
          Length = 202

 Score =  234 bits (597), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 107/167 (64%), Positives = 130/167 (77%)

Query: 18  SLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRY 77
           S E     +S          + +  +D L+ W R  S+  +TFGLACCAVEMM  + PRY
Sbjct: 31  STEVAPRPYSPFQKTSNLAEYSLARLDDLLNWGRKSSMWPLTFGLACCAVEMMHIAAPRY 90

Query: 78  DLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137
           D++R+G   RASPRQ+DV+I+AGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYH
Sbjct: 91  DMDRYGVVFRASPRQADVIIIAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYH 150

Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           YSYSVVRGCDRI+PVDIYVPGCPPTAEAL+YG+L LQKK++R   ++
Sbjct: 151 YSYSVVRGCDRIIPVDIYVPGCPPTAEALLYGVLQLQKKVKRYNALQ 197


>gi|119897120|ref|YP_932333.1| NADH-quinone oxidoreductase subunit B [Azoarcus sp. BH72]
 gi|218527969|sp|A1K3P1|NUOB2_AZOSB RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName:
           Full=NADH dehydrogenase I subunit B 2; AltName:
           Full=NDH-1 subunit B 2
 gi|119669533|emb|CAL93446.1| conserved hypothetical NADH-quinone oxidoreductase chain B
           [Azoarcus sp. BH72]
          Length = 159

 Score =  234 bits (596), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 104/143 (72%), Positives = 126/143 (88%)

Query: 37  GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVM 96
           GFL+T +D L    R+ S+ ++TFGLACCAVEMMQA+  RYD++RFG  PRASPRQ+D++
Sbjct: 10  GFLLTRLDTLCDMVRSNSMWYLTFGLACCAVEMMQAAASRYDMDRFGMIPRASPRQADLI 69

Query: 97  IVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV 156
           IVAGTLTNKMA A+R++YDQM EPRYVISMGSCANGGGYYHYSYSV RGCDRI+PVDIY+
Sbjct: 70  IVAGTLTNKMAPAIRKIYDQMAEPRYVISMGSCANGGGYYHYSYSVARGCDRILPVDIYI 129

Query: 157 PGCPPTAEALIYGILLLQKKIRR 179
           PGCPPTAEAL+YG++ LQ K++R
Sbjct: 130 PGCPPTAEALLYGLIQLQNKLKR 152


>gi|171677913|ref|XP_001903907.1| hypothetical protein [Podospora anserina S mat+]
 gi|170937025|emb|CAP61683.1| unnamed protein product [Podospora anserina S mat+]
          Length = 224

 Score =  234 bits (596), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 111/153 (72%), Positives = 127/153 (83%), Gaps = 3/153 (1%)

Query: 29  ISSEITHKGFL---VTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA 85
           + S+   KGF+   +T++D +  W R  SL  MTFGLACCAVEMM  S PRYD +R G  
Sbjct: 61  LPSQEGTKGFVQYALTTLDIITNWGRQSSLWPMTFGLACCAVEMMHLSTPRYDQDRLGII 120

Query: 86  PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRG 145
            RASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRG
Sbjct: 121 FRASPRQSDVMIVAGTLTNKMAPALRQVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRG 180

Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           CDR+VPVD+YVPGCPPT+EAL+YGI  LQ+K+R
Sbjct: 181 CDRVVPVDVYVPGCPPTSEALMYGIFQLQRKMR 213


>gi|238023160|ref|ZP_04603586.1| hypothetical protein GCWU000324_03086 [Kingella oralis ATCC 51147]
 gi|237865543|gb|EEP66683.1| hypothetical protein GCWU000324_03086 [Kingella oralis ATCC 51147]
          Length = 159

 Score =  234 bits (596), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 108/147 (73%), Positives = 126/147 (85%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           + +KGF+  S D ++ + RTGSL  +TFGLACCAVEMM A M RYDL+RFG   R SPRQ
Sbjct: 6   VLNKGFVTASADTVLNYVRTGSLWPVTFGLACCAVEMMHAGMARYDLDRFGIIFRPSPRQ 65

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           +D+MIVAGTLTNKMA ALRRVYDQM EPR+V+SMGSCANGGGYYHYSYSVVRG DR+VPV
Sbjct: 66  ADLMIVAGTLTNKMAPALRRVYDQMAEPRWVLSMGSCANGGGYYHYSYSVVRGADRVVPV 125

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179
           D+YVPGCPPTAEAL+YG++ LQ KI+R
Sbjct: 126 DVYVPGCPPTAEALLYGLIQLQGKIKR 152


>gi|237748890|ref|ZP_04579370.1| NADH-quinone oxidoreductase subunit B [Oxalobacter formigenes
           OXCC13]
 gi|229380252|gb|EEO30343.1| NADH-quinone oxidoreductase subunit B [Oxalobacter formigenes
           OXCC13]
          Length = 159

 Score =  234 bits (596), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 106/151 (70%), Positives = 128/151 (84%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           +  KGF+ T++D  + W RTGS+  +TFGLACCA+EMM +SMPRYD++RFG   RASPRQ
Sbjct: 6   LMDKGFVTTTLDTAINWLRTGSVWPVTFGLACCAIEMMHSSMPRYDMDRFGTFFRASPRQ 65

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           SD+MIVAGTL NKMA ALR+VYDQM EPR+V+SMGSCANGGGYYH SYSVVRGCD+IVPV
Sbjct: 66  SDLMIVAGTLCNKMAPALRKVYDQMAEPRWVVSMGSCANGGGYYHDSYSVVRGCDKIVPV 125

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           DIYVPGCPPTAEAL+Y ++ L+ KI+R   +
Sbjct: 126 DIYVPGCPPTAEALLYALIQLRTKIKRTSTI 156


>gi|301107944|ref|XP_002903054.1| NADH ubiquinone oxidoreductase, putative [Phytophthora infestans
           T30-4]
 gi|262098172|gb|EEY56224.1| NADH ubiquinone oxidoreductase, putative [Phytophthora infestans
           T30-4]
          Length = 205

 Score =  233 bits (595), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 105/141 (74%), Positives = 122/141 (86%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           ++V+ VD LV W R  SL  +TFGLACCAVEMM ++  RYD ER G   RASPRQ+DVMI
Sbjct: 54  YVVSRVDDLVNWGRKSSLWPITFGLACCAVEMMHSAGSRYDFERMGMVFRASPRQTDVMI 113

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGTLTNKMA ALRRVYDQMPEPRYV+SMGSCANGGGYYHYSY+VVRG DR++PVDIYVP
Sbjct: 114 VAGTLTNKMAPALRRVYDQMPEPRYVVSMGSCANGGGYYHYSYAVVRGADRVIPVDIYVP 173

Query: 158 GCPPTAEALIYGILLLQKKIR 178
           GCPPTAEAL++G++ LQKK++
Sbjct: 174 GCPPTAEALLFGLMQLQKKVK 194


>gi|301107922|ref|XP_002903043.1| NADH ubiquinone oxidoreductase, putative [Phytophthora infestans
           T30-4]
 gi|262098161|gb|EEY56213.1| NADH ubiquinone oxidoreductase, putative [Phytophthora infestans
           T30-4]
          Length = 205

 Score =  233 bits (595), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 105/141 (74%), Positives = 122/141 (86%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           ++V+ VD LV W R  SL  +TFGLACCAVEMM ++  RYD ER G   RASPRQ+DVMI
Sbjct: 54  YVVSRVDDLVNWGRKSSLWPITFGLACCAVEMMHSAGSRYDFERMGMVFRASPRQTDVMI 113

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGTLTNKMA ALRRVYDQMPEPRYV+SMGSCANGGGYYHYSY+VVRG DR++PVDIYVP
Sbjct: 114 VAGTLTNKMAPALRRVYDQMPEPRYVVSMGSCANGGGYYHYSYAVVRGADRVIPVDIYVP 173

Query: 158 GCPPTAEALIYGILLLQKKIR 178
           GCPPTAEAL++G++ LQKK++
Sbjct: 174 GCPPTAEALLFGLMQLQKKVK 194


>gi|325267311|ref|ZP_08133973.1| NADH-quinone oxidoreductase subunit B [Kingella denitrificans ATCC
           33394]
 gi|324981248|gb|EGC16898.1| NADH-quinone oxidoreductase subunit B [Kingella denitrificans ATCC
           33394]
          Length = 159

 Score =  233 bits (595), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 108/147 (73%), Positives = 126/147 (85%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           + +KGF+  S D ++ + RTGSL  +TFGLACCAVEMM A M RYDL+RFG   R SPRQ
Sbjct: 6   VLNKGFVTASADTVLNYVRTGSLWPVTFGLACCAVEMMHAGMARYDLDRFGIIFRPSPRQ 65

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           +D+MIVAGTLTNKMA ALRRVYDQM EPR+V+SMGSCANGGGYYHYSYSVVRG DR+VPV
Sbjct: 66  ADLMIVAGTLTNKMAPALRRVYDQMAEPRWVLSMGSCANGGGYYHYSYSVVRGADRVVPV 125

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179
           D+YVPGCPPTAEAL+YG++ LQ KI+R
Sbjct: 126 DVYVPGCPPTAEALLYGLIQLQGKIKR 152


>gi|294788083|ref|ZP_06753327.1| NADH dehydrogenase (ubiquinone), B subunit [Simonsiella muelleri
           ATCC 29453]
 gi|294484376|gb|EFG32059.1| NADH dehydrogenase (ubiquinone), B subunit [Simonsiella muelleri
           ATCC 29453]
          Length = 159

 Score =  233 bits (594), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 108/147 (73%), Positives = 126/147 (85%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           + +KGF+  S D ++ + RTGSL  +TFGLACCAVEMM A M RYDL+RFG   R SPRQ
Sbjct: 6   VLNKGFVTASADTVLNYVRTGSLWPVTFGLACCAVEMMHAGMARYDLDRFGIIFRPSPRQ 65

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           SD+MIVAGTLTNKMA ALRRVYDQM EPR+V+SMG+CANGGGYYHYSYSVVRG DR+VPV
Sbjct: 66  SDLMIVAGTLTNKMAPALRRVYDQMAEPRWVLSMGTCANGGGYYHYSYSVVRGADRVVPV 125

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179
           D+YVPGCPPTAEAL+YG++ LQ KI+R
Sbjct: 126 DVYVPGCPPTAEALLYGLIQLQGKIKR 152


>gi|255732844|ref|XP_002551345.1| NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial
           precursor [Candida tropicalis MYA-3404]
 gi|240131086|gb|EER30647.1| NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial
           precursor [Candida tropicalis MYA-3404]
          Length = 212

 Score =  233 bits (594), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 108/162 (66%), Positives = 129/162 (79%), Gaps = 2/162 (1%)

Query: 20  EKVDADFSRISSE--ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRY 77
           + +  DF  +S +       +++TS+D +  WAR  S   +TFGLACCAVEMM  S PRY
Sbjct: 41  QTLPTDFPLMSEKKATNAADYVLTSLDAIANWARKSSFWPVTFGLACCAVEMMHVSAPRY 100

Query: 78  DLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137
           D +R G   RASPRQSD+MIVAGTLTNKMA ALR+VYDQMP+P++VISMGSCANGGGYYH
Sbjct: 101 DQDRLGIIFRASPRQSDIMIVAGTLTNKMAPALRQVYDQMPDPKWVISMGSCANGGGYYH 160

Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           YSYSVVRGCDR+VPVDIYVPGCPPTAEAL+YG+  LQKK+ +
Sbjct: 161 YSYSVVRGCDRVVPVDIYVPGCPPTAEALMYGVFQLQKKMMK 202


>gi|317033085|ref|XP_001394844.2| NADH dehydrogenase [ubiquinone] iron-sulfur protein 7 [Aspergillus
           niger CBS 513.88]
          Length = 155

 Score =  233 bits (594), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 106/141 (75%), Positives = 123/141 (87%)

Query: 39  LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIV 98
           ++T+ DQ+V WAR GSL  ++FGLACCA+EMM  SMPRYD +R G   RASPRQSDVMIV
Sbjct: 5   VLTTFDQIVNWARQGSLWPLSFGLACCAIEMMHVSMPRYDQDRLGIIFRASPRQSDVMIV 64

Query: 99  AGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPG 158
           AGT+TNKMA ALR+ YDQMPEPR+VISMGSCANGGGYYHYSYS+VRG DRIVPVD+Y+PG
Sbjct: 65  AGTVTNKMAPALRQCYDQMPEPRWVISMGSCANGGGYYHYSYSIVRGVDRIVPVDVYIPG 124

Query: 159 CPPTAEALIYGILLLQKKIRR 179
           CPPTAEA +YG+  LQKKI+R
Sbjct: 125 CPPTAEATLYGVFQLQKKIKR 145


>gi|89900287|ref|YP_522758.1| NADH dehydrogenase subunit B [Rhodoferax ferrireducens T118]
 gi|122479525|sp|Q21YC6|NUOB_RHOFD RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|89345024|gb|ABD69227.1| NADH-quinone oxidoreductase, B subunit [Rhodoferax ferrireducens
           T118]
          Length = 159

 Score =  233 bits (594), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 111/152 (73%), Positives = 126/152 (82%), Gaps = 1/152 (0%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPR 91
           I  +GF+ TS D ++ WA+TGSL  M+FGLACCAVEMM A+  RYD+ RFG    RASPR
Sbjct: 5   ILKEGFITTSYDSVMNWAKTGSLWPMSFGLACCAVEMMHAANARYDISRFGAEVFRASPR 64

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
           QSD++IVAGTL NKMA A R+VYDQM EPR VISMGSCANGGGYYHYSYSVVRGCDRIVP
Sbjct: 65  QSDLIIVAGTLCNKMAPAFRKVYDQMSEPRRVISMGSCANGGGYYHYSYSVVRGCDRIVP 124

Query: 152 VDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           VD+YVPGCPPTAEAL+YGI+ LQ KIRR   +
Sbjct: 125 VDVYVPGCPPTAEALLYGIIQLQHKIRRTQTI 156


>gi|225712904|gb|ACO12298.1| NADH dehydrogenase iron-sulfur protein 7, mitochondrial precursor
           [Lepeophtheirus salmonis]
          Length = 211

 Score =  233 bits (594), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 108/147 (73%), Positives = 126/147 (85%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           ++V  +D L+ W R  SL  +TFGLA CAVEMM  + PRYD++R+G   RASPRQ+DV++
Sbjct: 60  YVVARLDDLINWGRKTSLWPLTFGLAYCAVEMMHIAAPRYDMDRYGVVFRASPRQADVIL 119

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGTLTNKMA A R+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP
Sbjct: 120 VAGTLTNKMAPAFRKVYDQMLEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 179

Query: 158 GCPPTAEALIYGILLLQKKIRRVGNVK 184
           GCPPTAEAL+YGIL LQKKI+R+ NV+
Sbjct: 180 GCPPTAEALMYGILQLQKKIKRMKNVQ 206


>gi|241953755|ref|XP_002419599.1| NADH-ubiquinone oxidoreductase subunit, putative [Candida
           dubliniensis CD36]
 gi|223642939|emb|CAX43194.1| NADH-ubiquinone oxidoreductase subunit, putative [Candida
           dubliniensis CD36]
          Length = 218

 Score =  233 bits (593), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 107/157 (68%), Positives = 127/157 (80%), Gaps = 2/157 (1%)

Query: 25  DFSRISSE--ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82
           DF  +S +       +++TS+D +  WAR  S   +TFGLACCAVEMM  S PRYD +R 
Sbjct: 52  DFPLMSEKKATNAADYVLTSLDMIANWARKSSFWPVTFGLACCAVEMMHVSAPRYDQDRL 111

Query: 83  GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142
           G   RASPRQSD+MIVAGTLTNKMA ALR+VYDQMP+P++VISMGSCANGGGYYHYSYSV
Sbjct: 112 GIIFRASPRQSDIMIVAGTLTNKMAPALRQVYDQMPDPKWVISMGSCANGGGYYHYSYSV 171

Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           VRGCDR++PVDIYVPGCPPTAEAL+YG+  LQKK+ +
Sbjct: 172 VRGCDRVIPVDIYVPGCPPTAEALMYGVFQLQKKMMK 208


>gi|126275592|ref|XP_001386878.1| NADH-ubiquinone oxidoreductase [Scheffersomyces stipitis CBS 6054]
 gi|126212747|gb|EAZ62855.1| NADH-ubiquinone oxidoreductase [Pichia stipitis CBS 6054]
          Length = 207

 Score =  232 bits (592), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 109/162 (67%), Positives = 128/162 (79%), Gaps = 2/162 (1%)

Query: 20  EKVDADFSRISSEITHK--GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRY 77
           + +  DF  +S +       + +TS+D +  WAR  S   +TFGLACCAVEMM  S PRY
Sbjct: 36  KALPTDFPLMSEKTASSPIDYALTSLDSIANWARKSSFWPVTFGLACCAVEMMHVSTPRY 95

Query: 78  DLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137
           D +R G   RASPRQSD+MIVAGT+TNKMA ALR+VYDQMP+PR+VISMGSCANGGGYYH
Sbjct: 96  DQDRLGIIFRASPRQSDIMIVAGTVTNKMAPALRQVYDQMPDPRWVISMGSCANGGGYYH 155

Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           YSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG+  LQKK+ +
Sbjct: 156 YSYSVVRGCDRIVPVDIYVPGCPPTAEALMYGVFQLQKKMMK 197


>gi|6689660|emb|CAB65525.1| subunit NUKM of protein NADH:Ubiquinone Oxidoreductase (Complex I)
           [Yarrowia lipolytica]
          Length = 210

 Score =  232 bits (592), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 109/169 (64%), Positives = 130/169 (76%), Gaps = 2/169 (1%)

Query: 12  SGQSSCSLEKVDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVEM 69
           +G    S   +  DF   S +  +    + +T++D +  WAR GS   +TFGLACCAVEM
Sbjct: 31  AGTPRVSSSSMPTDFPLPSQQKPNSAVDYTLTTLDAVANWARQGSFWPVTFGLACCAVEM 90

Query: 70  MQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSC 129
           M  S PRYD +R G   RASPRQSD+MIVAGTLTNKMA  LR+VYDQMPEPR+VISMGSC
Sbjct: 91  MHVSAPRYDQDRLGIIFRASPRQSDIMIVAGTLTNKMAPVLRQVYDQMPEPRWVISMGSC 150

Query: 130 ANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           ANGGGYYH+SYSVVRGCDRIVPVD+YVPGCPPT+EAL+YG+  LQ+K+R
Sbjct: 151 ANGGGYYHFSYSVVRGCDRIVPVDVYVPGCPPTSEALMYGVFQLQRKMR 199


>gi|68472189|ref|XP_719890.1| potential mitochondrial Complex I, NUKM_20kd subunit [Candida
           albicans SC5314]
 gi|68472424|ref|XP_719773.1| potential mitochondrial Complex I, NUKM_20kd subunit [Candida
           albicans SC5314]
 gi|46441605|gb|EAL00901.1| potential mitochondrial Complex I, NUKM_20kd subunit [Candida
           albicans SC5314]
 gi|46441731|gb|EAL01026.1| potential mitochondrial Complex I, NUKM_20kd subunit [Candida
           albicans SC5314]
          Length = 223

 Score =  232 bits (592), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 107/163 (65%), Positives = 129/163 (79%), Gaps = 2/163 (1%)

Query: 20  EKVDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRY 77
           + +  DF  +S +       +++TS+D +  WAR  S   +TFGLACCAVEMM  S PRY
Sbjct: 52  QTLPTDFPLMSEKKATNAADYVLTSLDMIANWARKSSFWPVTFGLACCAVEMMHVSAPRY 111

Query: 78  DLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137
           D +R G   RASPRQSD+MIVAGTLTNKMA ALR+VYDQMP+P++VISMGSCANGGGYYH
Sbjct: 112 DQDRLGIIFRASPRQSDIMIVAGTLTNKMAPALRQVYDQMPDPKWVISMGSCANGGGYYH 171

Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           YSYSVVRGCDR++PVDIYVPGCPPTAEAL+YG+  LQKK+ + 
Sbjct: 172 YSYSVVRGCDRVIPVDIYVPGCPPTAEALMYGVFQLQKKMMKT 214


>gi|238881092|gb|EEQ44730.1| NADH-ubiquinone oxidoreductase 20 kDa subunit [Candida albicans
           WO-1]
          Length = 226

 Score =  232 bits (592), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 107/163 (65%), Positives = 129/163 (79%), Gaps = 2/163 (1%)

Query: 20  EKVDADFSRISSE--ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRY 77
           + +  DF  +S +       +++TS+D +  WAR  S   +TFGLACCAVEMM  S PRY
Sbjct: 55  QTLPTDFPLMSEKKATNAADYVLTSLDMIANWARKSSFWPVTFGLACCAVEMMHVSAPRY 114

Query: 78  DLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137
           D +R G   RASPRQSD+MIVAGTLTNKMA ALR+VYDQMP+P++VISMGSCANGGGYYH
Sbjct: 115 DQDRLGIIFRASPRQSDIMIVAGTLTNKMAPALRQVYDQMPDPKWVISMGSCANGGGYYH 174

Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           YSYSVVRGCDR++PVDIYVPGCPPTAEAL+YG+  LQKK+ + 
Sbjct: 175 YSYSVVRGCDRVIPVDIYVPGCPPTAEALMYGVFQLQKKMMKT 217


>gi|119172964|ref|XP_001239009.1| NADH-ubiquinone oxidoreductase subunit [Coccidioides immitis RS]
          Length = 213

 Score =  231 bits (590), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 110/176 (62%), Positives = 137/176 (77%), Gaps = 4/176 (2%)

Query: 4   TTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLA 63
           T + ++  S  S  +L+ V  D  +  + + H    +T+ D LV WAR GSL  ++FGLA
Sbjct: 32  TYIQRQPSSTWSGNALKPVKHDAEK-GAPLQH---FLTTTDNLVNWARQGSLWPLSFGLA 87

Query: 64  CCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYV 123
           CC VEMM ASMPRYD +R G   RASPRQ+DVM+VAGT+TNKMA ALR +YDQMP+P++V
Sbjct: 88  CCGVEMMSASMPRYDQDRLGIIFRASPRQADVMLVAGTVTNKMAPALRLLYDQMPDPKWV 147

Query: 124 ISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           ISMGSCANGGGYYHYSYSV+RG DRI+PVDIYVPGCPPT EAL+YG+ LLQK++R+
Sbjct: 148 ISMGSCANGGGYYHYSYSVLRGVDRIIPVDIYVPGCPPTPEALLYGVFLLQKRMRK 203


>gi|316969245|gb|EFV53373.1| NADH dehydrogenase I, B subunit [Trichinella spiralis]
          Length = 803

 Score =  231 bits (588), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 105/155 (67%), Positives = 127/155 (81%), Gaps = 5/155 (3%)

Query: 26  FSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA 85
           F++++S      + +   D L+ WAR GSL  +TFGLACCA+EMM  + PRYD++RFG  
Sbjct: 356 FTKVNSA---AEYALARADDLINWARRGSLWPLTFGLACCAIEMMHFAAPRYDMDRFGIV 412

Query: 86  PRASPRQSDVMIVAGTLTNKMASALRRV--YDQMPEPRYVISMGSCANGGGYYHYSYSVV 143
            RASPRQ+D MI+AGT+TNKMA ALRRV  YDQMP+P++VISMGSCANGGGYYHYSYSVV
Sbjct: 413 FRASPRQADCMIIAGTVTNKMAPALRRVNIYDQMPDPKWVISMGSCANGGGYYHYSYSVV 472

Query: 144 RGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           RGCDRI+PVDIYVPGCPP+AEAL+Y  L LQKKI+
Sbjct: 473 RGCDRIIPVDIYVPGCPPSAEALLYAFLQLQKKIK 507


>gi|302904283|ref|XP_003049034.1| hypothetical protein NECHADRAFT_82494 [Nectria haematococca mpVI
           77-13-4]
 gi|256729969|gb|EEU43321.1| hypothetical protein NECHADRAFT_82494 [Nectria haematococca mpVI
           77-13-4]
          Length = 206

 Score =  231 bits (588), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 108/142 (76%), Positives = 121/142 (85%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           + V S+D +  WAR GSL  MTFGLACCAVEMM  + PRYD +RFGF  RASPR +D+MI
Sbjct: 55  YAVASLDIIANWARQGSLWPMTFGLACCAVEMMHIAGPRYDQDRFGFMFRASPRHADIMI 114

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGT+TNKMA ALR+VYDQM +PR+VISMGSCANGGGYYHYSYSVVRG DRIVPVDIYVP
Sbjct: 115 VAGTVTNKMAPALRQVYDQMADPRWVISMGSCANGGGYYHYSYSVVRGVDRIVPVDIYVP 174

Query: 158 GCPPTAEALIYGILLLQKKIRR 179
           GCPPT EALIYG+  LQ+KIRR
Sbjct: 175 GCPPTCEALIYGMFQLQRKIRR 196


>gi|83775539|dbj|BAE65659.1| unnamed protein product [Aspergillus oryzae]
          Length = 172

 Score =  230 bits (586), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 109/156 (69%), Positives = 127/156 (81%), Gaps = 4/156 (2%)

Query: 24  ADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFG 83
           A F+ ++SEI    F  T++DQLV WAR  SL  ++FGLACCAVEMMQ SMPRYD +R G
Sbjct: 11  ASFTELASEI----FSRTTIDQLVNWARQSSLWPLSFGLACCAVEMMQVSMPRYDQDRLG 66

Query: 84  FAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVV 143
              RASPRQSDVM+VAGT+TNKM  ALR+ YDQMP+P++VISMGSCANGGGYYHYSYSVV
Sbjct: 67  IIFRASPRQSDVMVVAGTVTNKMGPALRQCYDQMPDPKWVISMGSCANGGGYYHYSYSVV 126

Query: 144 RGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           RG DRIVPVD+Y+PGCPPT EA + GI  LQKK+R 
Sbjct: 127 RGVDRIVPVDVYIPGCPPTPEAFLCGIFQLQKKMRH 162


>gi|320036960|gb|EFW18898.1| NADH-ubiquinone oxidoreductase 20 kDa subunit [Coccidioides
           posadasii str. Silveira]
          Length = 213

 Score =  230 bits (586), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 108/177 (61%), Positives = 137/177 (77%), Gaps = 4/177 (2%)

Query: 4   TTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLA 63
           T + ++  S  +  +L+ V  D  +  + + H    +T+ D LV WAR GSL  ++FGLA
Sbjct: 32  TYIQRQPSSTWNGNALKPVKPDAEK-GAPLQH---FLTTTDNLVNWARQGSLWPLSFGLA 87

Query: 64  CCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYV 123
           CC +EMM ASMPRYD +R G   RASPRQ+DVM+VAGT+TNKMA ALR +YDQMP+P++V
Sbjct: 88  CCGLEMMSASMPRYDQDRLGIIFRASPRQADVMLVAGTVTNKMAPALRLLYDQMPDPKWV 147

Query: 124 ISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           ISMGSCANGGGYYHYSYSV+RG DRI+PVDIYVPGCPPT EAL+YG+ LLQK++R+ 
Sbjct: 148 ISMGSCANGGGYYHYSYSVLRGVDRIIPVDIYVPGCPPTPEALLYGVFLLQKRMRKT 204


>gi|303324039|ref|XP_003072007.1| NADH-ubiquinone oxidoreductase, putative [Coccidioides posadasii
           C735 delta SOWgp]
 gi|240111717|gb|EER29862.1| NADH-ubiquinone oxidoreductase, putative [Coccidioides posadasii
           C735 delta SOWgp]
          Length = 213

 Score =  230 bits (586), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 108/177 (61%), Positives = 137/177 (77%), Gaps = 4/177 (2%)

Query: 4   TTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLA 63
           T + ++  S  +  +L+ V  D  +  + + H    +T+ D LV WAR GSL  ++FGLA
Sbjct: 32  TYIQRQPSSTWNGNALKPVKPDAEK-GAPLQH---FLTTTDNLVNWARQGSLWPLSFGLA 87

Query: 64  CCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYV 123
           CC +EMM ASMPRYD +R G   RASPRQ+DVM+VAGT+TNKMA ALR +YDQMP+P++V
Sbjct: 88  CCGLEMMSASMPRYDQDRLGIIFRASPRQADVMLVAGTVTNKMAPALRLLYDQMPDPKWV 147

Query: 124 ISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           ISMGSCANGGGYYHYSYSV+RG DRI+PVDIYVPGCPPT EAL+YG+ LLQK++R+ 
Sbjct: 148 ISMGSCANGGGYYHYSYSVLRGVDRIIPVDIYVPGCPPTPEALLYGVFLLQKRMRKT 204


>gi|301107924|ref|XP_002903044.1| NADH ubiquinone oxidoreductase, putative [Phytophthora infestans
           T30-4]
 gi|262098162|gb|EEY56214.1| NADH ubiquinone oxidoreductase, putative [Phytophthora infestans
           T30-4]
          Length = 213

 Score =  230 bits (586), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 103/141 (73%), Positives = 120/141 (85%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           + V+ +D LV W R  SL  ++FGLACCAVEMM A+  RYD ER G   RASPRQ+DVMI
Sbjct: 62  YAVSRLDDLVNWGRKSSLWPISFGLACCAVEMMHAAGSRYDFERMGMVFRASPRQTDVMI 121

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGTLTNKMA ALRR+YDQMPEPRYV+S+GSCANGGGYYHYSY+V RG DR+VPVDIYVP
Sbjct: 122 VAGTLTNKMAPALRRIYDQMPEPRYVVSLGSCANGGGYYHYSYAVARGVDRVVPVDIYVP 181

Query: 158 GCPPTAEALIYGILLLQKKIR 178
           GCPPT+EALI+G++ LQKKI+
Sbjct: 182 GCPPTSEALIFGLMQLQKKIK 202


>gi|257437224|gb|ACV53599.1| NADH ubiqionone oxidoreductase chain B [Agrobacterium sp. ATCC
           31749]
          Length = 121

 Score =  230 bits (586), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 108/121 (89%), Positives = 115/121 (95%), Gaps = 1/121 (0%)

Query: 40  VTSVDQLVTWARTGSLMWMTFGLACCAVE-MMQASMPRYDLERFGFAPRASPRQSDVMIV 98
           VTS D+L+TWARTGSLMWM FGLACCAVE +MQAS PRYD+ERFG APRASPRQSDVMIV
Sbjct: 1   VTSTDELITWARTGSLMWMQFGLACCAVEGLMQASGPRYDMERFGVAPRASPRQSDVMIV 60

Query: 99  AGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPG 158
           AGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSY+VVRGCDR+VPVDIYVPG
Sbjct: 61  AGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYAVVRGCDRVVPVDIYVPG 120

Query: 159 C 159
           C
Sbjct: 121 C 121


>gi|237746750|ref|ZP_04577230.1| NADH-quinone oxidoreductase subunit B [Oxalobacter formigenes
           HOxBLS]
 gi|229378101|gb|EEO28192.1| NADH-quinone oxidoreductase subunit B [Oxalobacter formigenes
           HOxBLS]
          Length = 159

 Score =  229 bits (585), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 105/151 (69%), Positives = 127/151 (84%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           + +KGF+ T++D  + W RTGS+  ++FGLACCA+EMM +S  RYD++RFG   RASPRQ
Sbjct: 6   LLNKGFVTTTLDTAINWLRTGSVWPVSFGLACCAIEMMHSSASRYDMDRFGTFFRASPRQ 65

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           SD+MIVAGTL NKMA ALR+VYDQM EPR+V+SMGSCANGGGYYH SYSVVRGCDRIVPV
Sbjct: 66  SDLMIVAGTLCNKMAPALRKVYDQMAEPRWVVSMGSCANGGGYYHDSYSVVRGCDRIVPV 125

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           DIYVPGCPPTAEAL+Y ++ L+ KIRR   +
Sbjct: 126 DIYVPGCPPTAEALLYALMQLRGKIRRTSTI 156


>gi|302928116|ref|XP_003054637.1| hypothetical protein NECHADRAFT_73438 [Nectria haematococca mpVI
           77-13-4]
 gi|256735578|gb|EEU48924.1| hypothetical protein NECHADRAFT_73438 [Nectria haematococca mpVI
           77-13-4]
          Length = 221

 Score =  229 bits (585), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 103/141 (73%), Positives = 121/141 (85%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           + +T++D++  WAR GS   +TFGLACC +EMM  SMPRYD +R G   RASPRQSDVMI
Sbjct: 69  YALTTLDKIAAWARNGSFWPLTFGLACCGIEMMHVSMPRYDQDRLGIIFRASPRQSDVMI 128

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGT+TNKMA+A+R  YDQMPEPR+VISMGSCANGGGYYHYSYSV+RG DRI+PVDIYVP
Sbjct: 129 VAGTVTNKMATAVRLCYDQMPEPRWVISMGSCANGGGYYHYSYSVLRGVDRILPVDIYVP 188

Query: 158 GCPPTAEALIYGILLLQKKIR 178
           GCPPTAEAL+YG+  LQ+KIR
Sbjct: 189 GCPPTAEALMYGVFQLQRKIR 209


>gi|259486449|tpe|CBF84294.1| TPA: hypothetical protein ANIA_11251 [Aspergillus nidulans FGSC A4]
          Length = 211

 Score =  229 bits (583), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 104/142 (73%), Positives = 119/142 (83%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           +++T  D L++WAR GS   ++F LACC VEMM  SMPRYD +R G   RASPRQ+DVMI
Sbjct: 60  YVLTKTDALISWARNGSFWPLSFALACCGVEMMHTSMPRYDQDRLGIIFRASPRQADVMI 119

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGTLTNKMA ALR++YDQMPEPR+VISMGSCANGGGYYHYSYSVVRG DRIVPVD+YVP
Sbjct: 120 VAGTLTNKMAPALRQLYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGVDRIVPVDVYVP 179

Query: 158 GCPPTAEALIYGILLLQKKIRR 179
           GCPP  EAL+ GI  LQ+KIRR
Sbjct: 180 GCPPMPEALLQGIFTLQRKIRR 201


>gi|258568476|ref|XP_002584982.1| NADH-ubiquinone oxidoreductase 19.3 kDa subunit [Uncinocarpus
           reesii 1704]
 gi|237906428|gb|EEP80829.1| NADH-ubiquinone oxidoreductase 19.3 kDa subunit [Uncinocarpus
           reesii 1704]
          Length = 176

 Score =  229 bits (583), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 110/144 (76%), Positives = 121/144 (84%), Gaps = 3/144 (2%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           F +T++DQ+  WAR  SL  MTFGLACCAVEMM  S PRYD +R G   RASPRQSDVMI
Sbjct: 22  FALTTLDQVANWARQSSLWPMTFGLACCAVEMMHLSTPRYDQDRLGIIFRASPRQSDVMI 81

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGTLTNKMA ALR+VYDQMP+PR+VISMGSCANGGGYYHYSYSV RGCDRIVPVDIYVP
Sbjct: 82  VAGTLTNKMAPALRQVYDQMPDPRWVISMGSCANGGGYYHYSYSVTRGCDRIVPVDIYVP 141

Query: 158 GC---PPTAEALIYGILLLQKKIR 178
           G    PPT+EAL+YGI  LQKK+R
Sbjct: 142 GSLKGPPTSEALMYGIFQLQKKMR 165


>gi|260940357|ref|XP_002614478.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720]
 gi|238851664|gb|EEQ41128.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720]
          Length = 208

 Score =  228 bits (581), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 105/142 (73%), Positives = 120/142 (84%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           + +TS+D +  WAR  S   +TFGLACCAVEMM  S PRYD +R G   RASPRQSD+MI
Sbjct: 57  YALTSLDAIAMWARKSSFWPVTFGLACCAVEMMHVSTPRYDQDRLGIIFRASPRQSDIMI 116

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGTLTNKMA ALR+VYDQM +PR+VISMGSCANGGGYYHYSYSVVRGCDR+VPVDIYVP
Sbjct: 117 VAGTLTNKMAPALRQVYDQMADPRWVISMGSCANGGGYYHYSYSVVRGCDRVVPVDIYVP 176

Query: 158 GCPPTAEALIYGILLLQKKIRR 179
           GCPPTAEAL+YG+  LQKK+ +
Sbjct: 177 GCPPTAEALMYGVFQLQKKMMK 198


>gi|315051282|ref|XP_003175015.1| NADH-ubiquinone oxidoreductase subunit [Arthroderma gypseum CBS
           118893]
 gi|311340330|gb|EFQ99532.1| NADH-ubiquinone oxidoreductase subunit [Arthroderma gypseum CBS
           118893]
          Length = 191

 Score =  228 bits (581), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 106/160 (66%), Positives = 126/160 (78%)

Query: 20  EKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDL 79
           ++++        E T    +VT +DQ+  WAR GSL  + FGLACC VEMM  SMPRYDL
Sbjct: 22  KRLEVPLPSQGEEPTPLRHMVTKLDQITNWARQGSLWPLMFGLACCGVEMMALSMPRYDL 81

Query: 80  ERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS 139
           +R G   RASPRQ+DV+IV+GT+TNKM  ALR +YDQMP+P++VISMGSCANGGGYYHYS
Sbjct: 82  DRMGIIYRASPRQADVLIVSGTVTNKMGPALRLLYDQMPDPKWVISMGSCANGGGYYHYS 141

Query: 140 YSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           YSVVRG DR+VPVD+YVPGCPPTAEA +YGIL LQKKI R
Sbjct: 142 YSVVRGVDRLVPVDVYVPGCPPTAEAFMYGILQLQKKISR 181


>gi|270008238|gb|EFA04686.1| hypothetical protein TcasGA2_TC014482 [Tribolium castaneum]
          Length = 204

 Score =  228 bits (581), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 101/147 (68%), Positives = 127/147 (86%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           +++  +D L+ W R  S+  +TFGLACCA+EMM  + PRYD++R+G   RASPRQ++V+I
Sbjct: 51  WVLARLDDLLNWGRKTSMWPLTFGLACCAIEMMHIAAPRYDMDRYGVVFRASPRQTEVII 110

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGT+TNKMA++LR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGC+RI+PVDIYVP
Sbjct: 111 VAGTVTNKMAASLRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCNRIIPVDIYVP 170

Query: 158 GCPPTAEALIYGILLLQKKIRRVGNVK 184
           GCPPTAEAL+YGIL LQKK+ R   ++
Sbjct: 171 GCPPTAEALMYGILQLQKKVNRHNAIQ 197


>gi|332255974|ref|XP_003277096.1| PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 7,
           mitochondrial-like [Nomascus leucogenys]
          Length = 156

 Score =  228 bits (580), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 108/126 (85%), Positives = 116/126 (92%)

Query: 54  SLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRV 113
           SL  MTFGLACCAVEMM  + PRYD++RFG   RASPRQSDVMIVAGTLTNKMA ALR+V
Sbjct: 21  SLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQSDVMIVAGTLTNKMAPALRKV 80

Query: 114 YDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLL 173
           YDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY+PGCPPTAEAL+YGIL L
Sbjct: 81  YDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYIPGCPPTAEALLYGILQL 140

Query: 174 QKKIRR 179
           Q+KI+R
Sbjct: 141 QRKIKR 146


>gi|242765656|ref|XP_002341019.1| NADH-ubiquinone oxidoreductase subunit B, putative [Talaromyces
           stipitatus ATCC 10500]
 gi|218724215|gb|EED23632.1| NADH-ubiquinone oxidoreductase subunit B, putative [Talaromyces
           stipitatus ATCC 10500]
          Length = 247

 Score =  228 bits (580), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 111/162 (68%), Positives = 123/162 (75%), Gaps = 21/162 (12%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           + +T++DQ+  WAR  SL  MTFGLACCAVEMM  S PRYD +R G   RASPRQSDVMI
Sbjct: 75  YALTTLDQIANWARQSSLWPMTFGLACCAVEMMHLSTPRYDQDRLGIIFRASPRQSDVMI 134

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGTLTNKMA ALR+VYDQMP+PR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP
Sbjct: 135 VAGTLTNKMAPALRQVYDQMPDPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 194

Query: 158 GC---------------------PPTAEALIYGILLLQKKIR 178
           GC                     PPT+EAL+YGI  LQKK+R
Sbjct: 195 GCKFDILLMLKLSLILIERHLKGPPTSEALMYGIFQLQKKMR 236


>gi|242015738|ref|XP_002428504.1| NADH-ubiquinone oxidoreductase 20 kDa subunit, putative [Pediculus
           humanus corporis]
 gi|212513138|gb|EEB15766.1| NADH-ubiquinone oxidoreductase 20 kDa subunit, putative [Pediculus
           humanus corporis]
          Length = 214

 Score =  227 bits (579), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 100/141 (70%), Positives = 120/141 (85%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           +++   D  + WAR  S+  +TFGLACCAVEMM  + PRYD++RFG   RASPRQ+D++I
Sbjct: 63  YVLARTDDFINWARKSSIFPLTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQADLII 122

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGTLTNKMA  LR++YDQM  P++VISMGSCANGGGYYHYSYSVVRGCDRI+PVDIYVP
Sbjct: 123 VAGTLTNKMAPLLRKIYDQMLSPKWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVP 182

Query: 158 GCPPTAEALIYGILLLQKKIR 178
           GCPPTAEAL+Y +LLLQKKI+
Sbjct: 183 GCPPTAEALLYAVLLLQKKIK 203


>gi|317158068|ref|XP_001826792.2| NADH dehydrogenase [ubiquinone] iron-sulfur protein 7 [Aspergillus
           oryzae RIB40]
          Length = 190

 Score =  227 bits (579), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 107/156 (68%), Positives = 125/156 (80%), Gaps = 3/156 (1%)

Query: 27  SRISSEITHKG---FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFG 83
           S I +  TH      ++T++DQLV WAR  SL  ++FGLACCAVEMMQ SMPRYD +R G
Sbjct: 25  SIIKTNGTHSNKAEHVLTTIDQLVNWARQSSLWPLSFGLACCAVEMMQVSMPRYDQDRLG 84

Query: 84  FAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVV 143
              RASPRQSDVM+VAGT+TNKM  ALR+ YDQMP+P++VISMGSCANGGGYYHYSYSVV
Sbjct: 85  IIFRASPRQSDVMVVAGTVTNKMGPALRQCYDQMPDPKWVISMGSCANGGGYYHYSYSVV 144

Query: 144 RGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           RG DRIVPVD+Y+PGCPPT EA + GI  LQKK+R 
Sbjct: 145 RGVDRIVPVDVYIPGCPPTPEAFLCGIFQLQKKMRH 180


>gi|255941166|ref|XP_002561352.1| Pc16g10420 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211585975|emb|CAP93712.1| Pc16g10420 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 209

 Score =  227 bits (579), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 106/143 (74%), Positives = 123/143 (86%), Gaps = 1/143 (0%)

Query: 37  GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVM 96
           G+L+ + DQLV W R GSL  ++FGLACC +EMM  SMPRYD +R G   RASPRQ+DVM
Sbjct: 58  GYLLYA-DQLVNWGRQGSLWPLSFGLACCGIEMMHTSMPRYDQDRLGIIFRASPRQADVM 116

Query: 97  IVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV 156
           IVAGT+ NKMA A+R++YDQMPEP++VISMGSCANGGGYYHYSY+VVRG DRIVPVDIYV
Sbjct: 117 IVAGTVVNKMAPAVRQLYDQMPEPKWVISMGSCANGGGYYHYSYNVVRGVDRIVPVDIYV 176

Query: 157 PGCPPTAEALIYGILLLQKKIRR 179
           PGCPPTAEAL+ GI LLQKK+RR
Sbjct: 177 PGCPPTAEALLQGIFLLQKKMRR 199


>gi|149034570|gb|EDL89307.1| NADH dehydrogenase (ubiquinone) Fe-S protein 7, isoform CRA_c
           [Rattus norvegicus]
          Length = 132

 Score =  227 bits (579), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 106/127 (83%), Positives = 116/127 (91%)

Query: 58  MTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQM 117
           MTFGLACCAVEMM  + PRYD++RFG   RASPRQ+DVMIVAGTLTNKMA ALR+VYDQM
Sbjct: 1   MTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQADVMIVAGTLTNKMAPALRKVYDQM 60

Query: 118 PEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
           PEPRYV+SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQ+KI
Sbjct: 61  PEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQRKI 120

Query: 178 RRVGNVK 184
           +R   +K
Sbjct: 121 KREQKLK 127


>gi|159124830|gb|EDP49948.1| NADH-ubiquinone oxidoreductase subunit B, putative [Aspergillus
           fumigatus A1163]
          Length = 225

 Score =  226 bits (576), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 103/142 (72%), Positives = 123/142 (86%)

Query: 39  LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIV 98
           ++T+ D L+ WAR GSL  ++FGLACC VEMM ASMPRYD +R G   RASPRQ+DVM+V
Sbjct: 75  ILTTTDSLINWARQGSLWPLSFGLACCGVEMMAASMPRYDQDRQGIIFRASPRQADVMLV 134

Query: 99  AGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPG 158
           AGT+TNKMA ALR++YDQMP+P++VISMGSCANGGGYYH+SYSVVRG DR+VPVDIYVPG
Sbjct: 135 AGTVTNKMAPALRQLYDQMPDPKWVISMGSCANGGGYYHHSYSVVRGVDRLVPVDIYVPG 194

Query: 159 CPPTAEALIYGILLLQKKIRRV 180
           CPPT EAL+YGIL L++KI R 
Sbjct: 195 CPPTPEALLYGILQLKRKIERT 216


>gi|72004758|ref|XP_780430.1| PREDICTED: similar to NADH-plastoquinone oxidoreductase
           [Strongylocentrotus purpuratus]
 gi|115948827|ref|XP_001196650.1| PREDICTED: similar to NADH-plastoquinone oxidoreductase
           [Strongylocentrotus purpuratus]
          Length = 132

 Score =  226 bits (576), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 105/126 (83%), Positives = 115/126 (91%)

Query: 58  MTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQM 117
           MT GLACCAVEMM  + PRYD++RFG   RASPRQSDVMIVAGTLTNKMA ALR+VYDQM
Sbjct: 1   MTLGLACCAVEMMHFAAPRYDMDRFGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQM 60

Query: 118 PEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
           PEPR+VISMGSCANGGGYYHYSY+VVRGCDRIVPVDIYVPGCPPTAEAL+YG+L LQKKI
Sbjct: 61  PEPRWVISMGSCANGGGYYHYSYAVVRGCDRIVPVDIYVPGCPPTAEALLYGVLQLQKKI 120

Query: 178 RRVGNV 183
           +R  N+
Sbjct: 121 KRAQNI 126


>gi|50423781|ref|XP_460475.1| DEHA2F02552p [Debaryomyces hansenii CBS767]
 gi|49656144|emb|CAG88782.1| DEHA2F02552p [Debaryomyces hansenii]
          Length = 208

 Score =  226 bits (576), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 105/157 (66%), Positives = 125/157 (79%), Gaps = 2/157 (1%)

Query: 25  DFSRISSEITHK--GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82
           DF  +S +       + +TS+D +  WAR  S   +TFGLACCAVEMM  S PRYD +R 
Sbjct: 42  DFPLMSQKTASAPVDYALTSLDAIANWARKSSFWPVTFGLACCAVEMMHVSTPRYDQDRL 101

Query: 83  GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142
           G   RASPRQSD+MIVAGT+TNKMA ALR+VYDQM +PR+VISMGSCANGGGYYHYSYSV
Sbjct: 102 GIIFRASPRQSDIMIVAGTVTNKMAPALRQVYDQMADPRWVISMGSCANGGGYYHYSYSV 161

Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           VRGCDR++PVD+YVPGCPPTAEAL+YG+  LQKK+ +
Sbjct: 162 VRGCDRLIPVDVYVPGCPPTAEALMYGVFQLQKKMMK 198


>gi|91083385|ref|XP_967426.1| PREDICTED: similar to NADH-ubiquinone oxidoreductase, partial
           [Tribolium castaneum]
          Length = 227

 Score =  226 bits (575), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 100/140 (71%), Positives = 124/140 (88%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           +++  +D L+ W R  S+  +TFGLACCA+EMM  + PRYD++R+G   RASPRQ++V+I
Sbjct: 43  WVLARLDDLLNWGRKTSMWPLTFGLACCAIEMMHIAAPRYDMDRYGVVFRASPRQTEVII 102

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGT+TNKMA++LR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGC+RI+PVDIYVP
Sbjct: 103 VAGTVTNKMAASLRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCNRIIPVDIYVP 162

Query: 158 GCPPTAEALIYGILLLQKKI 177
           GCPPTAEAL+YGIL LQKK+
Sbjct: 163 GCPPTAEALMYGILQLQKKV 182


>gi|29841262|gb|AAP06294.1| similar to probable NADH-ubiquinone oxidoreductase 20 kDa subunit
           precursor; complex I-20kC; CI-20KD [Schistosoma
           japonicum]
 gi|226470044|emb|CAX70303.1| NADH dehydrogenase (ubiquinone) Fe-S protein 7 [Schistosoma
           japonicum]
          Length = 207

 Score =  226 bits (575), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 101/147 (68%), Positives = 125/147 (85%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           F++T +D L  WAR  S+  +TFGLACCAVEMM  + PRYD++R+G   RASPRQ+D+MI
Sbjct: 56  FVLTRLDDLANWARKNSIYPLTFGLACCAVEMMHIAGPRYDMDRYGVVFRASPRQADLMI 115

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           V+GT+TNKMA ALRR+YDQM  P++VISMGSCANGGGYYHYSYSV+RGCDR++PVDIYVP
Sbjct: 116 VSGTVTNKMAPALRRIYDQMTHPKWVISMGSCANGGGYYHYSYSVLRGCDRVIPVDIYVP 175

Query: 158 GCPPTAEALIYGILLLQKKIRRVGNVK 184
           GCPP+AEAL+Y IL LQKKI+   +V+
Sbjct: 176 GCPPSAEALMYSILQLQKKIKSEKHVQ 202


>gi|307006579|gb|ADN23574.1| NADH-ubiquinone oxidoreductase NUFS7/PSST/20 kDa subunit [Hyalomma
           marginatum rufipes]
          Length = 182

 Score =  226 bits (575), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 103/144 (71%), Positives = 122/144 (84%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           F +   D ++ W R  SL  +TFGLACCAVEMM  + PRYD++R+G   RASPRQ+DV+I
Sbjct: 31  FALARADDILAWGRKTSLWPLTFGLACCAVEMMHIAAPRYDMDRYGVVFRASPRQADVII 90

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGT+TNKMA ALR+VYDQM EP++VIS GSCANGGGYYHYSYSVVRGCDRI+PVDIYVP
Sbjct: 91  VAGTVTNKMAPALRKVYDQMLEPKWVISTGSCANGGGYYHYSYSVVRGCDRIIPVDIYVP 150

Query: 158 GCPPTAEALIYGILLLQKKIRRVG 181
           GCPPTAEAL+YGIL LQ+KI+R+ 
Sbjct: 151 GCPPTAEALMYGILQLQRKIKRLN 174


>gi|226470042|emb|CAX70302.1| NADH dehydrogenase (ubiquinone) Fe-S protein 7 [Schistosoma
           japonicum]
 gi|226489138|emb|CAX74918.1| NADH dehydrogenase (ubiquinone) Fe-S protein 7 [Schistosoma
           japonicum]
          Length = 207

 Score =  226 bits (575), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 101/147 (68%), Positives = 125/147 (85%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           F++T +D L  WAR  S+  +TFGLACCAVEMM  + PRYD++R+G   RASPRQ+D+MI
Sbjct: 56  FVLTRLDDLANWARKNSIYPLTFGLACCAVEMMHIAGPRYDMDRYGVVFRASPRQADLMI 115

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           V+GT+TNKMA ALRR+YDQM  P++VISMGSCANGGGYYHYSYSV+RGCDR++PVDIYVP
Sbjct: 116 VSGTVTNKMAPALRRIYDQMTHPKWVISMGSCANGGGYYHYSYSVLRGCDRVIPVDIYVP 175

Query: 158 GCPPTAEALIYGILLLQKKIRRVGNVK 184
           GCPP+AEAL+Y IL LQKKI+   +V+
Sbjct: 176 GCPPSAEALMYSILQLQKKIKSEKHVQ 202


>gi|146421276|ref|XP_001486588.1| conserved hypothetical protein [Meyerozyma guilliermondii ATCC
           6260]
 gi|146390003|gb|EDK38161.1| conserved hypothetical protein [Meyerozyma guilliermondii ATCC
           6260]
          Length = 210

 Score =  226 bits (575), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 103/142 (72%), Positives = 120/142 (84%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           +++TS+D +  WAR  S   +TFGLACCAVEMM  S PRYD +R G   RASPRQSDVMI
Sbjct: 59  YVLTSLDTIANWARKSSFWPVTFGLACCAVEMMHVSAPRYDQDRLGIIFRASPRQSDVMI 118

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGT+TNKM  ALR+VYDQM +PR+VISMGSCANGGGYYHYSYSVVRGCDR++PVD+YVP
Sbjct: 119 VAGTVTNKMGPALRQVYDQMADPRWVISMGSCANGGGYYHYSYSVVRGCDRLIPVDVYVP 178

Query: 158 GCPPTAEALIYGILLLQKKIRR 179
           GCPPTAEAL+YG+  LQKK+ R
Sbjct: 179 GCPPTAEALMYGVFRLQKKMMR 200


>gi|320580734|gb|EFW94956.1| NADH-ubiquinone oxidoreductase subunit [Pichia angusta DL-1]
          Length = 193

 Score =  225 bits (574), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 107/140 (76%), Positives = 116/140 (82%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           +  TS D+L  WAR  S    TFGLACCAVEMM  S PRYD +R G   RASPRQSDVMI
Sbjct: 41  YAFTSFDKLKNWARKSSFWPATFGLACCAVEMMHVSAPRYDQDRLGIIFRASPRQSDVMI 100

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGT+TNKMA ALR+VYDQMP PR+VISMGSCANGGGYYHYSYSVVRG DRIVPVDIYVP
Sbjct: 101 VAGTVTNKMAPALRQVYDQMPYPRWVISMGSCANGGGYYHYSYSVVRGVDRIVPVDIYVP 160

Query: 158 GCPPTAEALIYGILLLQKKI 177
           GCPP++EAL+YGI  LQKKI
Sbjct: 161 GCPPSSEALMYGIFRLQKKI 180


>gi|156384021|ref|XP_001633130.1| predicted protein [Nematostella vectensis]
 gi|156220196|gb|EDO41067.1| predicted protein [Nematostella vectensis]
          Length = 209

 Score =  225 bits (573), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 100/142 (70%), Positives = 123/142 (86%)

Query: 37  GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVM 96
           G++VT +D LV W+R  SL  + FGLACC +EMM  + PRYD++RFG   RASPRQ DVM
Sbjct: 56  GYVVTKLDDLVNWSRRSSLWPLMFGLACCGIEMMHFAAPRYDMDRFGVVFRASPRQIDVM 115

Query: 97  IVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV 156
           +V+GT+TNKMA ALRR+YDQMPEPR+VIS+GSCAN GGYY++SYSVVRGCDRI+PVDIYV
Sbjct: 116 LVSGTVTNKMAPALRRLYDQMPEPRWVISVGSCANSGGYYYHSYSVVRGCDRIIPVDIYV 175

Query: 157 PGCPPTAEALIYGILLLQKKIR 178
           PGCPP+AEAL++G+L LQKK+R
Sbjct: 176 PGCPPSAEALLFGVLQLQKKVR 197


>gi|328353181|emb|CCA39579.1| NADH dehydrogenase (ubiquinone) Fe-S protein 7 [Pichia pastoris CBS
           7435]
          Length = 282

 Score =  225 bits (573), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 104/140 (74%), Positives = 117/140 (83%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           +  T+ D++  WAR  S   MTFGLACCAVEMM  S PRYD +R G   RASPRQSD+MI
Sbjct: 130 YTFTTFDKMKNWARKSSFWPMTFGLACCAVEMMHVSAPRYDQDRLGIIFRASPRQSDIMI 189

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGT+TNKMA ALR+VYDQMP PR+VISMGSCANGGGYYHYSYSVVRG DRIVPVDIYVP
Sbjct: 190 VAGTVTNKMAPALRQVYDQMPYPRWVISMGSCANGGGYYHYSYSVVRGVDRIVPVDIYVP 249

Query: 158 GCPPTAEALIYGILLLQKKI 177
           GCPPT+EAL+YG+  LQKK+
Sbjct: 250 GCPPTSEALMYGVFQLQKKM 269


>gi|254571403|ref|XP_002492811.1| hypothetical protein [Pichia pastoris GS115]
 gi|238032609|emb|CAY70632.1| Hypothetical protein PAS_chr3_0585 [Pichia pastoris GS115]
 gi|308152254|emb|CBI83546.1| NUKM (PSST) subunit of mitochondrial NADH:ubiquinone oxidoreductase
           (complex I) [Pichia pastoris]
          Length = 204

 Score =  225 bits (573), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 104/140 (74%), Positives = 117/140 (83%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           +  T+ D++  WAR  S   MTFGLACCAVEMM  S PRYD +R G   RASPRQSD+MI
Sbjct: 52  YTFTTFDKMKNWARKSSFWPMTFGLACCAVEMMHVSAPRYDQDRLGIIFRASPRQSDIMI 111

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGT+TNKMA ALR+VYDQMP PR+VISMGSCANGGGYYHYSYSVVRG DRIVPVDIYVP
Sbjct: 112 VAGTVTNKMAPALRQVYDQMPYPRWVISMGSCANGGGYYHYSYSVVRGVDRIVPVDIYVP 171

Query: 158 GCPPTAEALIYGILLLQKKI 177
           GCPPT+EAL+YG+  LQKK+
Sbjct: 172 GCPPTSEALMYGVFQLQKKM 191


>gi|119497569|ref|XP_001265543.1| NADH-ubiquinone oxidoreductase subunit B, putative [Neosartorya
           fischeri NRRL 181]
 gi|119413705|gb|EAW23646.1| NADH-ubiquinone oxidoreductase subunit B, putative [Neosartorya
           fischeri NRRL 181]
          Length = 226

 Score =  224 bits (570), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 102/142 (71%), Positives = 121/142 (85%)

Query: 39  LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIV 98
           ++T+ D L+ WAR GS   + FGLACC VEMM ASMPRYD +R G   RASPRQ+DVMIV
Sbjct: 76  ILTTTDSLINWARQGSFWPLAFGLACCGVEMMAASMPRYDQDRQGIIFRASPRQADVMIV 135

Query: 99  AGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPG 158
           +GT+TNKMA ALR++YDQMP+P++VISMGSCANGGGYYH+SYSVVRG DR+VPVDIYVPG
Sbjct: 136 SGTVTNKMAPALRQLYDQMPDPKWVISMGSCANGGGYYHHSYSVVRGVDRLVPVDIYVPG 195

Query: 159 CPPTAEALIYGILLLQKKIRRV 180
           CPPT EAL+YGIL L++KI R 
Sbjct: 196 CPPTPEALLYGILQLKRKIERT 217


>gi|121714236|ref|XP_001274729.1| NADH-ubiquinone oxidoreductase subunit B, putative [Aspergillus
           clavatus NRRL 1]
 gi|119402882|gb|EAW13303.1| NADH-ubiquinone oxidoreductase subunit B, putative [Aspergillus
           clavatus NRRL 1]
          Length = 225

 Score =  223 bits (569), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 101/140 (72%), Positives = 120/140 (85%)

Query: 39  LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIV 98
           ++T+ D L+ WAR GSL  + FGLACC VEMM ASMPRYD +R G   RASPRQ+DVMIV
Sbjct: 75  ILTTTDALINWARQGSLWPLAFGLACCGVEMMAASMPRYDQDRQGIIFRASPRQADVMIV 134

Query: 99  AGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPG 158
           AGT+TNKMA ALR++YDQMP+P++VISMGSCANGGGYYH+SYSVVRG DR+VPVDIYVPG
Sbjct: 135 AGTVTNKMAPALRQLYDQMPDPKWVISMGSCANGGGYYHHSYSVVRGVDRLVPVDIYVPG 194

Query: 159 CPPTAEALIYGILLLQKKIR 178
           CPPT EAL+Y +  LQ+K+R
Sbjct: 195 CPPTPEALLYAVFQLQRKMR 214


>gi|296811983|ref|XP_002846329.1| NADH:ubiquinone oxidoreductase kD subunit [Arthroderma otae CBS
           113480]
 gi|238841585|gb|EEQ31247.1| NADH:ubiquinone oxidoreductase kD subunit [Arthroderma otae CBS
           113480]
          Length = 197

 Score =  223 bits (569), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 100/140 (71%), Positives = 120/140 (85%)

Query: 39  LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIV 98
           ++T  DQ+  WAR GSL  +TFGLACC VEMM  SMPRYDL+R G   RASPRQ+DV+IV
Sbjct: 47  VLTKFDQIANWARQGSLWPLTFGLACCGVEMMAVSMPRYDLDRMGIFYRASPRQADVLIV 106

Query: 99  AGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPG 158
           +GT+TNKM  A+R +YDQMP+P++VISMGSCANGGGYYHYSYSVVRG DR++PVD+YVPG
Sbjct: 107 SGTVTNKMGPAIRLLYDQMPDPKWVISMGSCANGGGYYHYSYSVVRGVDRLLPVDVYVPG 166

Query: 159 CPPTAEALIYGILLLQKKIR 178
           CPPTAEA +YG+L LQKKI+
Sbjct: 167 CPPTAEAFLYGVLQLQKKIK 186


>gi|156351435|ref|XP_001622510.1| hypothetical protein NEMVEDRAFT_v1g220626 [Nematostella vectensis]
 gi|156209067|gb|EDO30410.1| predicted protein [Nematostella vectensis]
          Length = 133

 Score =  223 bits (568), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 102/121 (84%), Positives = 113/121 (93%)

Query: 58  MTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQM 117
           MTFGLACCAVEMM  + PRYD++RFG   RASPRQ+DVMIVAGTLTNKMA ALR+VYDQM
Sbjct: 1   MTFGLACCAVEMMHFAAPRYDMDRFGVVFRASPRQADVMIVAGTLTNKMAPALRKVYDQM 60

Query: 118 PEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
           PEPR+VISMGSCANGGGYYHYSYSVVRGCDR++PVDIYVPGCPPTAEAL+YG+L LQKK+
Sbjct: 61  PEPRWVISMGSCANGGGYYHYSYSVVRGCDRVIPVDIYVPGCPPTAEALLYGVLQLQKKV 120

Query: 178 R 178
           R
Sbjct: 121 R 121


>gi|170592879|ref|XP_001901192.1| Probable NADH-ubiquinone oxidoreductase 20 kDa subunit,
           mitochondrialprecursor  [Brugia malayi]
 gi|158591259|gb|EDP29872.1| Probable NADH-ubiquinone oxidoreductase 20 kDa subunit,
           mitochondrialprecursor , putative [Brugia malayi]
          Length = 216

 Score =  223 bits (567), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 105/140 (75%), Positives = 120/140 (85%)

Query: 40  VTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVA 99
           VT +D L       SL  MTFGLACCAVEMM  + PRYD++RFG   RASPRQSDVMIVA
Sbjct: 67  VTRLDDLNNMIHRCSLWPMTFGLACCAVEMMHFAAPRYDMDRFGVVFRASPRQSDVMIVA 126

Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGC 159
           GT+TNKMA A+RRVYDQMPEP++VISMGSCANGGGYYHYSYSV++G DRI+PVDIYVPGC
Sbjct: 127 GTVTNKMAPAVRRVYDQMPEPKWVISMGSCANGGGYYHYSYSVLKGVDRIIPVDIYVPGC 186

Query: 160 PPTAEALIYGILLLQKKIRR 179
           PP+AEAL+YG+L LQKKI+R
Sbjct: 187 PPSAEALLYGVLQLQKKIKR 206


>gi|312077007|ref|XP_003141114.1| NADH-ubiquinone oxidoreductase Fe-S protein 7 [Loa loa]
 gi|307763722|gb|EFO22956.1| NADH-ubiquinone oxidoreductase Fe-S protein 7 [Loa loa]
          Length = 204

 Score =  221 bits (564), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 105/144 (72%), Positives = 120/144 (83%)

Query: 40  VTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVA 99
           VT +D L       SL  MTFGLACCAVEMM  + PRYD++RFG   RASPRQSDVMIVA
Sbjct: 61  VTRLDDLNNMIHRSSLWPMTFGLACCAVEMMHFAAPRYDMDRFGVVFRASPRQSDVMIVA 120

Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGC 159
           GT+TNKMA A+RRVYDQMPEP++VISMGSCANGGGYYHYSYSV++G DRI+PVDIYVPGC
Sbjct: 121 GTVTNKMAPAVRRVYDQMPEPKWVISMGSCANGGGYYHYSYSVLKGVDRIIPVDIYVPGC 180

Query: 160 PPTAEALIYGILLLQKKIRRVGNV 183
           PP+AEAL+YG+L LQKK+   G V
Sbjct: 181 PPSAEALLYGVLQLQKKLSGNGRV 204


>gi|256088165|ref|XP_002580226.1| NADH-plastoquinone oxidoreductase [Schistosoma mansoni]
 gi|238665746|emb|CAZ36465.1| NADH-plastoquinone oxidoreductase, putative [Schistosoma mansoni]
          Length = 207

 Score =  221 bits (564), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 99/147 (67%), Positives = 123/147 (83%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           +++T +D L  WAR  S+  +TFGLACCAVEMM  + PRYD++R+G   RASPRQ+D++I
Sbjct: 56  YVITRLDDLADWARKNSIYPLTFGLACCAVEMMHIAGPRYDMDRYGVVFRASPRQADLLI 115

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           V+GT+TNKMA AL R+Y QM +P++VISMGSCANGGGYYHYSYSVVRGCDRI+PVDIYVP
Sbjct: 116 VSGTVTNKMAPALHRIYSQMTQPKWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVP 175

Query: 158 GCPPTAEALIYGILLLQKKIRRVGNVK 184
           GCPP+AEAL+Y IL LQKKI+   + K
Sbjct: 176 GCPPSAEALMYSILQLQKKIKSEKHFK 202


>gi|299830273|ref|YP_003734437.1| NADH dehydrogenase subunit 10 [Paramecium caudatum]
 gi|299507832|emb|CAZ66816.1| NADH dehydrogenase subunit 10 [Paramecium caudatum]
          Length = 154

 Score =  221 bits (564), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 97/147 (65%), Positives = 124/147 (84%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           FL TS + L++WAR GS   +TFGLACCA+EMM A++ RYD +RFG   RA+PRQSD++I
Sbjct: 5   FLKTSANNLISWARQGSFWPLTFGLACCALEMMHATVSRYDFDRFGVIFRATPRQSDLII 64

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGT+TNKMA ALRR+YDQ  +P++V+SMGSCANGGGYYHYSY+VV+GCD+I+PVDI+VP
Sbjct: 65  VAGTVTNKMAPALRRLYDQTADPKWVLSMGSCANGGGYYHYSYAVVKGCDKIIPVDIFVP 124

Query: 158 GCPPTAEALIYGILLLQKKIRRVGNVK 184
           GCPP+AEAL +G+L LQK + +  N K
Sbjct: 125 GCPPSAEALFFGVLQLQKTLMKTINEK 151


>gi|17509685|ref|NP_492445.1| NADH Ubiquinone oxidoreductase Fe-S protein family member (nduf-7)
           [Caenorhabditis elegans]
 gi|3024249|sp|Q94360|NDUS7_CAEEL RecName: Full=Probable NADH dehydrogenase [ubiquinone] iron-sulfur
           protein 7, mitochondrial; AltName: Full=Complex I-20kD;
           Short=CI-20kD; AltName: Full=NADH-ubiquinone
           oxidoreductase 20 kDa subunit; Flags: Precursor
 gi|3880584|emb|CAB02132.1| C. elegans protein W10D5.2, confirmed by transcript evidence
           [Caenorhabditis elegans]
          Length = 199

 Score =  221 bits (563), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 97/142 (68%), Positives = 123/142 (86%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           + +  +D ++  A+ GS+  +TFGLACCAVEMM  + PRYD++R+G   RASPRQ+D++ 
Sbjct: 48  YALARLDDVLNLAQRGSIWPLTFGLACCAVEMMHFAAPRYDMDRYGVVFRASPRQADLIF 107

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGT+TNKMA ALRR+YDQMPE ++VISMGSCANGGGYYHY+YSV+RGCDR++PVDIYVP
Sbjct: 108 VAGTVTNKMAPALRRIYDQMPEAKWVISMGSCANGGGYYHYAYSVLRGCDRVIPVDIYVP 167

Query: 158 GCPPTAEALIYGILLLQKKIRR 179
           GCPPTAEAL+YG+L LQKKI+R
Sbjct: 168 GCPPTAEALLYGVLQLQKKIKR 189


>gi|302833603|ref|XP_002948365.1| NADH:ubiquinone oxidoreductase subunit 10 [Volvox carteri f.
           nagariensis]
 gi|300266585|gb|EFJ50772.1| NADH:ubiquinone oxidoreductase subunit 10 [Volvox carteri f.
           nagariensis]
          Length = 164

 Score =  221 bits (563), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 108/142 (76%), Positives = 123/142 (86%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           F+V+ VD ++ WAR GS+  MTFGLACCAVEMM A   RYDL+RFG   R SPRQSD MI
Sbjct: 13  FVVSKVDNVINWARAGSIWPMTFGLACCAVEMMHAGASRYDLDRFGIIFRPSPRQSDCMI 72

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGTLTNKMA ALR+VYDQMPEP++V+SMGSCANGGGYYHYSY+VVRGCDR+VPVD+YVP
Sbjct: 73  VAGTLTNKMAPALRKVYDQMPEPKWVVSMGSCANGGGYYHYSYAVVRGCDRVVPVDVYVP 132

Query: 158 GCPPTAEALIYGILLLQKKIRR 179
           GCPPTAE L+YG+L LQKKI R
Sbjct: 133 GCPPTAEGLLYGLLQLQKKIYR 154


>gi|268566427|ref|XP_002639719.1| Hypothetical protein CBG12445 [Caenorhabditis briggsae]
 gi|300681044|sp|A8XFG2|NDUS7_CAEBR RecName: Full=Probable NADH dehydrogenase [ubiquinone] iron-sulfur
           protein 7, mitochondrial; Flags: Precursor
 gi|187029568|emb|CAP31423.1| CBR-NDUF-7 protein [Caenorhabditis briggsae AF16]
          Length = 199

 Score =  221 bits (562), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 97/142 (68%), Positives = 123/142 (86%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           + +  +D ++  A+ GS+  +TFGLACCAVEMM  + PRYD++R+G   RASPRQ+D++ 
Sbjct: 48  YALARLDDVMNLAQRGSIWPLTFGLACCAVEMMHFAAPRYDMDRYGVVFRASPRQADLIF 107

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGT+TNKMA ALRR+YDQMPE ++VISMGSCANGGGYYHY+YSV+RGCDR++PVDIYVP
Sbjct: 108 VAGTVTNKMAPALRRIYDQMPEAKWVISMGSCANGGGYYHYAYSVLRGCDRVIPVDIYVP 167

Query: 158 GCPPTAEALIYGILLLQKKIRR 179
           GCPPTAEAL+YG+L LQKKI+R
Sbjct: 168 GCPPTAEALLYGVLQLQKKIKR 189


>gi|159485096|ref|XP_001700585.1| NADH:ubiquinone oxidoreductase subunit 10 [Chlamydomonas
           reinhardtii]
 gi|34328788|gb|AAQ63698.1| NADH:ubiquinone oxidoreductase subunit 10 [Chlamydomonas
           reinhardtii]
 gi|158272225|gb|EDO98029.1| NADH:ubiquinone oxidoreductase subunit 10 [Chlamydomonas
           reinhardtii]
          Length = 164

 Score =  221 bits (562), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 108/142 (76%), Positives = 123/142 (86%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           F+V+ VD +V WAR GS+  MTFGLACCAVEMM A   RYDL+R+G   R SPRQSD MI
Sbjct: 13  FVVSKVDNVVNWARAGSIWPMTFGLACCAVEMMHAGASRYDLDRYGIIFRPSPRQSDAMI 72

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGTLTNKMA ALR+VYDQMPEP++V+SMGSCANGGGYYHYSY+VVRGCDR+VPVD+YVP
Sbjct: 73  VAGTLTNKMAPALRKVYDQMPEPKWVVSMGSCANGGGYYHYSYAVVRGCDRVVPVDVYVP 132

Query: 158 GCPPTAEALIYGILLLQKKIRR 179
           GCPPTAE L+YG+L LQKKI R
Sbjct: 133 GCPPTAEGLLYGLLQLQKKIYR 154


>gi|308500063|ref|XP_003112217.1| CRE-NDUF-7 protein [Caenorhabditis remanei]
 gi|308268698|gb|EFP12651.1| CRE-NDUF-7 protein [Caenorhabditis remanei]
          Length = 199

 Score =  221 bits (562), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 97/142 (68%), Positives = 123/142 (86%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           + +  +D ++  A+ GS+  +TFGLACCAVEMM  + PRYD++R+G   RASPRQ+D++ 
Sbjct: 48  YALARLDDVMNLAQRGSIWPLTFGLACCAVEMMHFAAPRYDMDRYGVVFRASPRQADLIF 107

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGT+TNKMA ALRR+YDQMPE ++VISMGSCANGGGYYHY+YSV+RGCDR++PVDIYVP
Sbjct: 108 VAGTVTNKMAPALRRIYDQMPEAKWVISMGSCANGGGYYHYAYSVLRGCDRVIPVDIYVP 167

Query: 158 GCPPTAEALIYGILLLQKKIRR 179
           GCPPTAEAL+YG+L LQKKI+R
Sbjct: 168 GCPPTAEALLYGVLQLQKKIKR 189


>gi|114053179|ref|NP_001040530.1| NADH-ubiquinone oxidoreductase 20 kDa subunit precursor [Bombyx
           mori]
 gi|95102896|gb|ABF51389.1| NADH-ubiquinone oxidoreductase 20 kDa subunit precursor [Bombyx
           mori]
          Length = 235

 Score =  220 bits (561), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 98/143 (68%), Positives = 120/143 (83%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           ++V   D ++ W R  S+  +TFGLACCA+EMM  + PRYD++R G   R +PRQ+DV+I
Sbjct: 84  WVVARADDILNWGRRNSVWPLTFGLACCALEMMHYAGPRYDMDRLGMVFRGTPRQTDVII 143

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGT+TNKMA ALR+ YD MPEPR+V+SMGSCANGGGYYHY+YS VRGCDRIVPVDIYVP
Sbjct: 144 VAGTVTNKMAPALRKTYDLMPEPRWVVSMGSCANGGGYYHYTYSTVRGCDRIVPVDIYVP 203

Query: 158 GCPPTAEALIYGILLLQKKIRRV 180
           GCPPTAEAL+YG+L LQKKI+R+
Sbjct: 204 GCPPTAEALLYGMLQLQKKIKRM 226


>gi|145612789|ref|XP_360493.2| hypothetical protein MGG_10805 [Magnaporthe oryzae 70-15]
 gi|145019908|gb|EDK04136.1| hypothetical protein MGG_10805 [Magnaporthe oryzae 70-15]
          Length = 147

 Score =  220 bits (560), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 100/137 (72%), Positives = 120/137 (87%)

Query: 43  VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL 102
           +D+L+ WAR GS+  +TF LACC +EMM  SMPRYD +R G   RASPRQ+DVMIVAGT+
Sbjct: 1   MDRLLAWARNGSMWPLTFALACCGIEMMHLSMPRYDQDRLGIIFRASPRQADVMIVAGTV 60

Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162
           TNKMA A+R+ YDQMP+P++VISMG+CANGGGYYHYSYSVVRG DRI+PVDIYVPGCPPT
Sbjct: 61  TNKMAPAVRQCYDQMPDPKWVISMGTCANGGGYYHYSYSVVRGVDRILPVDIYVPGCPPT 120

Query: 163 AEALIYGILLLQKKIRR 179
           AEAL+YG+L LQKKI++
Sbjct: 121 AEALMYGLLQLQKKIQK 137


>gi|1019632|gb|AAA79257.1| photosystem II protein G [Paramecium aurelia]
          Length = 156

 Score =  220 bits (560), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 97/152 (63%), Positives = 124/152 (81%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           I    FL  S + L++WAR GS   +TFGLACCA+EMM A++ RYD +RFG   RA+PRQ
Sbjct: 2   ILKADFLKLSANNLISWARQGSFWPLTFGLACCALEMMHATVSRYDFDRFGVIFRATPRQ 61

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           +D++IVAGT+TNKMA ALRR+YDQ  +P++V+SMGSCANGGGYYHYSY+VV+GCD+I+PV
Sbjct: 62  ADLIIVAGTVTNKMAPALRRLYDQTADPKWVLSMGSCANGGGYYHYSYAVVKGCDKIIPV 121

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           DI+VPGCPPTAEAL +G+L LQK + +  N K
Sbjct: 122 DIFVPGCPPTAEALFFGVLQLQKTLMKTINEK 153


>gi|301107946|ref|XP_002903055.1| NADH ubiquinone oxidoreductase, putative [Phytophthora infestans
           T30-4]
 gi|262098173|gb|EEY56225.1| NADH ubiquinone oxidoreductase, putative [Phytophthora infestans
           T30-4]
          Length = 155

 Score =  218 bits (556), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 98/141 (69%), Positives = 121/141 (85%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           ++V+ +D L+ W++  SL  ++FGLACCAVEMM  +  RYD ER G   RASPR +DVMI
Sbjct: 4   YVVSRLDDLMNWSKKSSLWPLSFGLACCAVEMMHTAGSRYDFERMGLLFRASPRCTDVMI 63

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGT+TNKMA ALRR+YDQMPEP++VISMGSCANGGGYYHYSYSVVRG +RI+PVDIYVP
Sbjct: 64  VAGTVTNKMAPALRRIYDQMPEPKFVISMGSCANGGGYYHYSYSVVRGVNRILPVDIYVP 123

Query: 158 GCPPTAEALIYGILLLQKKIR 178
           GCPPTAEAL++G++ LQKK++
Sbjct: 124 GCPPTAEALLFGVMQLQKKLK 144


>gi|11466261|ref|NP_049576.1| NADH dehydrogenase subunit 10 [Tetrahymena pyriformis]
 gi|5306137|gb|AAD41921.1|AF160864_9 NADH dehydrogenase subunit 10 [Tetrahymena pyriformis]
          Length = 162

 Score =  218 bits (556), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 98/145 (67%), Positives = 124/145 (85%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           ++VT V+ +V+WAR GS   +TFGLACCAVEMM A++ RYD +RFG   RA+PRQ+D+++
Sbjct: 5   YIVTPVNAVVSWARQGSFWPLTFGLACCAVEMMHATVSRYDFDRFGVIFRATPRQADLIL 64

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGTLTNKMA  LRR+Y+Q  +P++V+SMGSCANGGGYYHYSYSVVRGC+RI+PVDIYVP
Sbjct: 65  VAGTLTNKMAPGLRRLYEQTLDPKWVLSMGSCANGGGYYHYSYSVVRGCNRIIPVDIYVP 124

Query: 158 GCPPTAEALIYGILLLQKKIRRVGN 182
           GCPPTAEAL++G+L LQK + R  N
Sbjct: 125 GCPPTAEALMFGVLQLQKSLYRQVN 149


>gi|114329866|ref|YP_740769.1| NADH dehydrogenase subunit 10 [Tetrahymena paravorax]
 gi|114150099|gb|ABI51678.1| NADH dehydrogenase subunit 10 [Tetrahymena paravorax]
          Length = 162

 Score =  218 bits (556), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 98/145 (67%), Positives = 124/145 (85%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           ++VT V+ +V+WAR GS   +TFGLACCAVEMM A++ RYD +RFG   RA+PRQ+D+++
Sbjct: 5   YIVTPVNAVVSWARQGSFWPLTFGLACCAVEMMHATVSRYDFDRFGVIFRATPRQADLIL 64

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGTLTNKMA  LRR+Y+Q  +P++V+SMGSCANGGGYYHYSYSVVRGC+RI+PVDIYVP
Sbjct: 65  VAGTLTNKMAPGLRRLYEQTLDPKWVLSMGSCANGGGYYHYSYSVVRGCNRIIPVDIYVP 124

Query: 158 GCPPTAEALIYGILLLQKKIRRVGN 182
           GCPPTAEAL++G+L LQK + R  N
Sbjct: 125 GCPPTAEALMFGVLQLQKSLYRQIN 149


>gi|290988400|ref|XP_002676909.1| predicted protein [Naegleria gruberi]
 gi|284090514|gb|EFC44165.1| predicted protein [Naegleria gruberi]
          Length = 186

 Score =  218 bits (555), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 98/142 (69%), Positives = 116/142 (81%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           +L   V  L  WAR  S+  +TFGLACCAVEMM  +  RYDLER+G   R +PRQSD MI
Sbjct: 7   YLKAPVHDLFAWARISSMWPVTFGLACCAVEMMHVAAARYDLERYGIFFRPTPRQSDAMI 66

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           +AGTLTNKMA ALR+V+DQM EPRY +SMGSCANGGGYYH+SY VVRG D+I+PVD+YVP
Sbjct: 67  IAGTLTNKMAPALRKVWDQMAEPRYSVSMGSCANGGGYYHFSYHVVRGADQIIPVDVYVP 126

Query: 158 GCPPTAEALIYGILLLQKKIRR 179
           GCPPTAEAL+YG+ +LQKKI+R
Sbjct: 127 GCPPTAEALLYGVYMLQKKIKR 148


>gi|114329910|ref|YP_740813.1| NADH dehydrogenase subunit 10 [Tetrahymena pigmentosa]
 gi|114150143|gb|ABI51721.1| NADH dehydrogenase subunit 10 [Tetrahymena pigmentosa]
          Length = 162

 Score =  218 bits (555), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 98/145 (67%), Positives = 124/145 (85%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           ++VT V+ +V+WAR GS   +TFGLACCAVEMM A++ RYD +RFG   RA+PRQ+D+++
Sbjct: 5   YIVTPVNAVVSWARQGSFWPLTFGLACCAVEMMHATVSRYDFDRFGVIFRATPRQADLIL 64

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGTLTNKMA  LRR+Y+Q  +P++V+SMGSCANGGGYYHYSYSVVRGC+RI+PVDIYVP
Sbjct: 65  VAGTLTNKMAPGLRRLYEQTLDPKWVLSMGSCANGGGYYHYSYSVVRGCNRIIPVDIYVP 124

Query: 158 GCPPTAEALIYGILLLQKKIRRVGN 182
           GCPPTAEAL++G+L LQK + R  N
Sbjct: 125 GCPPTAEALMFGVLQLQKSLYRQIN 149


>gi|301631485|ref|XP_002944828.1| PREDICTED: NADH-quinone oxidoreductase subunit B-like [Xenopus
           (Silurana) tropicalis]
          Length = 164

 Score =  218 bits (555), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 103/136 (75%), Positives = 117/136 (86%), Gaps = 1/136 (0%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPR 91
           +  +GF+ TS D +V WA+TGS+  MTFGLACCAVEMM A+  RYDL RFG    RASPR
Sbjct: 5   VMKEGFVTTSYDAVVNWAKTGSIWPMTFGLACCAVEMMHAASARYDLARFGAEVFRASPR 64

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
           QSD+MIVAGTL NKMA A+R+VYDQM EPR+V+SMGSCANGGGYYHYSYSVVRGCDR+VP
Sbjct: 65  QSDLMIVAGTLCNKMAPAMRKVYDQMSEPRWVLSMGSCANGGGYYHYSYSVVRGCDRVVP 124

Query: 152 VDIYVPGCPPTAEALI 167
           VD+YVPGCPPTAEALI
Sbjct: 125 VDVYVPGCPPTAEALI 140


>gi|260076082|gb|ACX30960.1| NADH dehydrogenase subunit 10 [Euplotes minuta]
          Length = 167

 Score =  218 bits (554), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 96/140 (68%), Positives = 122/140 (87%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           +LVT +  +V W+R+GS+  +TFGLACCAVEMM ++M RYDL+RFG   RASPR SD++I
Sbjct: 9   WLVTKLQTMVNWSRSGSIWPLTFGLACCAVEMMHSAMSRYDLDRFGMIFRASPRHSDLII 68

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           +AGTLTNKMA  LRR+++QM EP++++SMGSCANGGGYYHYSY+VVRG +RIVPVD+YVP
Sbjct: 69  IAGTLTNKMAPTLRRLFEQMQEPKFILSMGSCANGGGYYHYSYAVVRGAERIVPVDMYVP 128

Query: 158 GCPPTAEALIYGILLLQKKI 177
           GCPPTAEALI+G+L LQ K+
Sbjct: 129 GCPPTAEALIFGLLQLQGKV 148


>gi|15027638|ref|NP_149372.1| NADH dehydrogenase subunit 10 [Tetrahymena thermophila]
 gi|15011474|gb|AAK77569.1|AF396436_9 NADH dehydrogenase subunit 10 [Tetrahymena thermophila]
          Length = 162

 Score =  218 bits (554), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 97/145 (66%), Positives = 124/145 (85%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           ++VT ++ +V+WAR GS   +TFGLACCAVEMM A++ RYD +RFG   RA+PRQ+D+++
Sbjct: 5   YIVTPINAVVSWARQGSFWPLTFGLACCAVEMMHATVSRYDFDRFGVIFRATPRQADLIL 64

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGTLTNKMA  LRR+Y+Q  +P++V+SMGSCANGGGYYHYSYSVVRGC+RI+PVDIYVP
Sbjct: 65  VAGTLTNKMAPGLRRLYEQTLDPKWVLSMGSCANGGGYYHYSYSVVRGCNRIIPVDIYVP 124

Query: 158 GCPPTAEALIYGILLLQKKIRRVGN 182
           GCPPTAEAL++G+L LQK + R  N
Sbjct: 125 GCPPTAEALMFGVLQLQKSLYRQIN 149


>gi|114329820|ref|YP_740724.1| NADH dehydrogenase subunit 10 [Tetrahymena malaccensis]
 gi|114150053|gb|ABI51633.1| NADH dehydrogenase subunit 10 [Tetrahymena malaccensis]
          Length = 162

 Score =  218 bits (554), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 97/145 (66%), Positives = 124/145 (85%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           ++VT ++ +V+WAR GS   +TFGLACCAVEMM A++ RYD +RFG   RA+PRQ+D+++
Sbjct: 5   YIVTPINAVVSWARQGSFWPLTFGLACCAVEMMHATVSRYDFDRFGVIFRATPRQADLIL 64

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGTLTNKMA  LRR+Y+Q  +P++V+SMGSCANGGGYYHYSYSVVRGC+RI+PVDIYVP
Sbjct: 65  VAGTLTNKMAPGLRRLYEQTLDPKWVLSMGSCANGGGYYHYSYSVVRGCNRIIPVDIYVP 124

Query: 158 GCPPTAEALIYGILLLQKKIRRVGN 182
           GCPPTAEAL++G+L LQK + R  N
Sbjct: 125 GCPPTAEALMFGVLQLQKSLYRQIN 149


>gi|260076121|gb|ACX30998.1| NADH dehydrogenase subunit 10 [Moneuplotes crassus]
          Length = 163

 Score =  217 bits (553), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 96/140 (68%), Positives = 121/140 (86%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           +LVT +  ++ W+R GS+  +TFGLACCAVEMM ++M RYDL+RFG   RASPR SD++I
Sbjct: 5   WLVTKLQIMINWSRAGSIWPLTFGLACCAVEMMHSAMSRYDLDRFGTIFRASPRHSDLII 64

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           +AGTLTNKMA  LRR+++QM EP++++SMGSCANGGGYYHYSY+VVRG DRIVPVD+YVP
Sbjct: 65  IAGTLTNKMAPTLRRLFEQMQEPKFILSMGSCANGGGYYHYSYAVVRGADRIVPVDMYVP 124

Query: 158 GCPPTAEALIYGILLLQKKI 177
           GCPPTAEALI+G+L LQ K+
Sbjct: 125 GCPPTAEALIFGLLQLQGKV 144


>gi|46134967|ref|XP_389508.1| hypothetical protein FG09332.1 [Gibberella zeae PH-1]
          Length = 233

 Score =  216 bits (550), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 110/142 (77%), Positives = 124/142 (87%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           + +T+VD+L  WARTGSL  MTF LACC +EMM  SMPRYD +R G   RASPRQSDVMI
Sbjct: 81  YALTTVDKLANWARTGSLWPMTFALACCGIEMMHVSMPRYDQDRLGIIFRASPRQSDVMI 140

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYY+YSYSVVRG DRI+PVDIYVP
Sbjct: 141 VAGTLTNKMAPALRQVYDQMPEPRWVISMGSCANGGGYYYYSYSVVRGVDRIIPVDIYVP 200

Query: 158 GCPPTAEALIYGILLLQKKIRR 179
           GCPPTAEAL+YG+  LQ+KIR+
Sbjct: 201 GCPPTAEALMYGVFQLQRKIRK 222


>gi|9652180|gb|AAF91429.1|AF279902_1 NADH-ubiquinone oxidoreductase subunit PSST [Lupinus luteus]
          Length = 210

 Score =  214 bits (546), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 112/142 (78%), Positives = 122/142 (85%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           F+++ VD L+ WAR GS+  MTFGLACCAVEMM     RYDL+RFG   R SPRQSD MI
Sbjct: 59  FVISKVDDLMNWARRGSIWPMTFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDCMI 118

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSY VVRGCDRIVPVDIYVP
Sbjct: 119 VAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYYVVRGCDRIVPVDIYVP 178

Query: 158 GCPPTAEALIYGILLLQKKIRR 179
           GCPPTAEAL+YG+L LQKKI R
Sbjct: 179 GCPPTAEALLYGLLQLQKKINR 200


>gi|324522539|gb|ADY48077.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 7 [Ascaris
           suum]
          Length = 210

 Score =  214 bits (545), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 94/142 (66%), Positives = 120/142 (84%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           + +  VD ++   +  SL  +TFGLACCAVEMM  + PRYD++R+G   RASPRQ D++ 
Sbjct: 59  YALARVDDVINLCQRTSLWPLTFGLACCAVEMMHFAAPRYDMDRYGVVFRASPRQVDLIF 118

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           +AGT+TNKMA ALRR++DQMPE ++VISMGSCANGGGYYHY+YSV++GCDR++PVDIYVP
Sbjct: 119 IAGTVTNKMAPALRRIFDQMPEAKWVISMGSCANGGGYYHYAYSVLKGCDRVIPVDIYVP 178

Query: 158 GCPPTAEALIYGILLLQKKIRR 179
           GCPPTAEAL+YG+L LQKKI+R
Sbjct: 179 GCPPTAEALLYGVLQLQKKIKR 200


>gi|154282161|ref|XP_001541893.1| NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial
           precursor [Ajellomyces capsulatus NAm1]
 gi|150412072|gb|EDN07460.1| NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial
           precursor [Ajellomyces capsulatus NAm1]
          Length = 242

 Score =  214 bits (544), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 96/140 (68%), Positives = 117/140 (83%)

Query: 37  GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVM 96
           G  + S+D +  WAR GSL  ++ GLACC VEMM  SMPRYD +R G   RASPRQSD++
Sbjct: 89  GHFLGSIDAVTNWARQGSLWPVSLGLACCGVEMMAVSMPRYDQDRLGTIFRASPRQSDLL 148

Query: 97  IVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV 156
           IVAGT+TNKMA ALR VYDQMP+P++VISMGSCANGGGYYHYSYSVVRG DR++PVD+++
Sbjct: 149 IVAGTVTNKMAPALRLVYDQMPDPKWVISMGSCANGGGYYHYSYSVVRGVDRLLPVDLFL 208

Query: 157 PGCPPTAEALIYGILLLQKK 176
           PGCPPTAEAL+Y + +L+KK
Sbjct: 209 PGCPPTAEALLYAMAVLRKK 228


>gi|158260365|dbj|BAF82360.1| unnamed protein product [Homo sapiens]
          Length = 206

 Score =  213 bits (542), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 101/131 (77%), Positives = 110/131 (83%), Gaps = 4/131 (3%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           ++V  +D LV WAR  SL  MTFGLACCAVEMM  + PRYD++RFG   RASPRQSDVMI
Sbjct: 62  YVVAKLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQSDVMI 121

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGTLTNKMA ALR+VYDQMPEPRYV+SMGSCANGGGYYHYSYSVVRGCDRIVPVDIY+P
Sbjct: 122 VAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYIP 181

Query: 158 G----CPPTAE 164
           G     PPT E
Sbjct: 182 GRAGTAPPTRE 192


>gi|193787188|dbj|BAG52394.1| unnamed protein product [Homo sapiens]
          Length = 206

 Score =  213 bits (542), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 101/131 (77%), Positives = 110/131 (83%), Gaps = 4/131 (3%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           ++V  +D LV WAR  SL  MTFGLACCAVEMM  + PRYD++RFG   RASPRQSDVMI
Sbjct: 62  YVVAKLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQSDVMI 121

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGTLTNKMA ALR+VYDQMPEPRYV+SMGSCANGGGYYHYSYSVVRGCDRIVPVDIY+P
Sbjct: 122 VAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYIP 181

Query: 158 G----CPPTAE 164
           G     PPT E
Sbjct: 182 GRAGTAPPTRE 192


>gi|242810530|ref|XP_002485599.1| NADH-plastoquinone oxidoreductase, putative [Talaromyces stipitatus
           ATCC 10500]
 gi|218716224|gb|EED15646.1| NADH-plastoquinone oxidoreductase, putative [Talaromyces stipitatus
           ATCC 10500]
          Length = 195

 Score =  212 bits (539), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 95/142 (66%), Positives = 116/142 (81%)

Query: 37  GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVM 96
           G+++TSVDQ+V WAR  SL  ++F LACC +EMMQ SMP+YD +R G    ASPRQ+DVM
Sbjct: 43  GYVLTSVDQIVNWARQNSLWALSFVLACCTIEMMQVSMPQYDQDRLGIIFSASPRQADVM 102

Query: 97  IVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV 156
           +VAGT+T+KMA ALR+ YDQM EPR++I+MGSCANGGGYYHY YSVVRG DRI+PVD+Y+
Sbjct: 103 VVAGTVTSKMAPALRQCYDQMSEPRWLITMGSCANGGGYYHYIYSVVRGVDRIIPVDVYI 162

Query: 157 PGCPPTAEALIYGILLLQKKIR 178
           PGC PT EA +YG   LQ KIR
Sbjct: 163 PGCSPTPEAFLYGTFQLQNKIR 184


>gi|131324|sp|P15602|NDUS7_PARTE RecName: Full=NADH-ubiquinone oxidoreductase 20 kDa subunit
 gi|578753|emb|CAA34045.1| unnamed protein product [Paramecium aurelia]
          Length = 156

 Score =  211 bits (538), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 94/152 (61%), Positives = 121/152 (79%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           I    FL  S + L++WAR GS   +TFGLACCA+EMM A++ RYD +RFG   RA+PRQ
Sbjct: 2   ILKADFLKLSANNLISWARQGSFWPLTFGLACCALEMMHATVSRYDFDRFGVIFRATPRQ 61

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           +D++IVAGT+TNKMA ALRR+YDQ  +P++V+SMGSCANGGGYYHYSY+VV+GCD+I+PV
Sbjct: 62  ADLIIVAGTVTNKMAPALRRLYDQTADPKWVLSMGSCANGGGYYHYSYAVVKGCDKIIPV 121

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           D+  P CPPTAEAL +G+L LQK + +  N K
Sbjct: 122 DMLCPRCPPTAEALFFGVLQLQKTLMKTINEK 153


>gi|21750696|dbj|BAC03820.1| unnamed protein product [Homo sapiens]
          Length = 213

 Score =  211 bits (538), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 101/131 (77%), Positives = 110/131 (83%), Gaps = 4/131 (3%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           ++V  +D LV WAR  SL  MTFGLACCAVEMM  + PRYD++RFG   RASPRQSDVMI
Sbjct: 69  YVVAKLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQSDVMI 128

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGTLTNKMA ALR+VYDQMPEPRYV+SMGSCANGGGYYHYSYSVVRGCDRIVPVDIY+P
Sbjct: 129 VAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYIP 188

Query: 158 G----CPPTAE 164
           G     PPT E
Sbjct: 189 GRAGTAPPTRE 199


>gi|167945481|ref|ZP_02532555.1| NADH dehydrogenase subunit B [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 140

 Score =  211 bits (537), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 102/138 (73%), Positives = 114/138 (82%), Gaps = 1/138 (0%)

Query: 47  VTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKM 106
           + WARTGSL  MTFGLACCAVEMM A+  RYD++RFG   R SPRQSDVMIVAGTL NKM
Sbjct: 1   INWARTGSLWPMTFGLACCAVEMMHAAAARYDMDRFGIVFRPSPRQSDVMIVAGTLVNKM 60

Query: 107 ASA-LRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEA 165
           A+    R   + PEPR+VISMGSCANGGGYYHYSY+VVRGCDR+VPVDIYVPGCPPTAEA
Sbjct: 61  AAWRCARSTTRWPEPRWVISMGSCANGGGYYHYSYAVVRGCDRVVPVDIYVPGCPPTAEA 120

Query: 166 LIYGILLLQKKIRRVGNV 183
           L+YGI+ LQ KIRR   +
Sbjct: 121 LLYGIIQLQDKIRRTCTI 138


>gi|167740356|ref|ZP_02413130.1| NADH dehydrogenase subunit B [Burkholderia pseudomallei 14]
 gi|167817572|ref|ZP_02449252.1| NADH dehydrogenase subunit B [Burkholderia pseudomallei 91]
 gi|167825975|ref|ZP_02457446.1| NADH dehydrogenase subunit B [Burkholderia pseudomallei 9]
 gi|167896050|ref|ZP_02483452.1| NADH dehydrogenase subunit B [Burkholderia pseudomallei 7894]
 gi|167912696|ref|ZP_02499787.1| NADH dehydrogenase subunit B [Burkholderia pseudomallei 112]
 gi|167920662|ref|ZP_02507753.1| NADH dehydrogenase subunit B [Burkholderia pseudomallei BCC215]
 gi|226192982|ref|ZP_03788593.1| putative NADH-quinone oxidoreductase, B subunit [Burkholderia
           pseudomallei Pakistan 9]
 gi|237813963|ref|YP_002898414.1| NADH-quinone oxidoreductase subunit b (NADH dehydrogenase i subunit
           b) (ndh-1 subunit b) [Burkholderia pseudomallei MSHR346]
 gi|225934952|gb|EEH30928.1| putative NADH-quinone oxidoreductase, B subunit [Burkholderia
           pseudomallei Pakistan 9]
 gi|237506107|gb|ACQ98425.1| NADH-quinone oxidoreductase subunit b (NADH dehydrogenase i subunit
           b) (ndh-1 subunit b) [Burkholderia pseudomallei MSHR346]
          Length = 167

 Score =  211 bits (537), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 106/145 (73%), Positives = 125/145 (86%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           +   GF+VT++D  +  A+  SL +MTFGLACCAVEMM A+  RYD++RFG  PRASPRQ
Sbjct: 8   LEKDGFIVTTLDAAMAAAQKNSLWYMTFGLACCAVEMMHAAGARYDMDRFGMIPRASPRQ 67

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
            D+MIVAGTLTNKMA A+RRVYDQM EPRYV+SMGSCANGGGYYHY YSVVRGCDRIVPV
Sbjct: 68  CDLMIVAGTLTNKMAPAMRRVYDQMAEPRYVVSMGSCANGGGYYHYGYSVVRGCDRIVPV 127

Query: 153 DIYVPGCPPTAEALIYGILLLQKKI 177
           D+YVPGCPPTAEAL+YG++ LQ+K+
Sbjct: 128 DVYVPGCPPTAEALVYGLMQLQRKV 152


>gi|149034568|gb|EDL89305.1| NADH dehydrogenase (ubiquinone) Fe-S protein 7, isoform CRA_a
           [Rattus norvegicus]
          Length = 210

 Score =  211 bits (537), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 96/122 (78%), Positives = 106/122 (86%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           ++VT +D L+ WAR  SL  MTFGLACCAVEMM  + PRYD++RFG   RASPRQ+DVMI
Sbjct: 67  YVVTKLDDLINWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQADVMI 126

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGTLTNKMA ALR+VYDQMPEPRYV+SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP
Sbjct: 127 VAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 186

Query: 158 GC 159
             
Sbjct: 187 AA 188


>gi|8928600|ref|NP_059405.1| NADH dehydrogenase subunit 10 [Paramecium aurelia]
          Length = 154

 Score =  211 bits (537), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 93/147 (63%), Positives = 120/147 (81%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           FL  S + L++WAR GS   +TFGLACCA+EMM A++ RYD +RFG   RA+PRQ+D++I
Sbjct: 5   FLKLSANNLISWARQGSFWPLTFGLACCALEMMHATVSRYDFDRFGVIFRATPRQADLII 64

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGT+TNKMA ALRR+YDQ  +P++V+SMGSCANGGGYYHYSY+VV+GCD+I+PVD+  P
Sbjct: 65  VAGTVTNKMAPALRRLYDQTADPKWVLSMGSCANGGGYYHYSYAVVKGCDKIIPVDMLCP 124

Query: 158 GCPPTAEALIYGILLLQKKIRRVGNVK 184
            CPPTAEAL +G+L LQK + +  N K
Sbjct: 125 RCPPTAEALFFGVLQLQKTLMKTINEK 151


>gi|148699632|gb|EDL31579.1| NADH dehydrogenase (ubiquinone) Fe-S protein 7, isoform CRA_a [Mus
           musculus]
          Length = 199

 Score =  211 bits (536), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 96/122 (78%), Positives = 106/122 (86%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           ++VT +D L+ WAR  SL  MTFGLACCAVEMM  + PRYD++RFG   RASPRQ+DVMI
Sbjct: 73  YVVTKLDDLINWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQADVMI 132

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGTLTNKMA ALR+VYDQMPEPRYV+SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP
Sbjct: 133 VAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 192

Query: 158 GC 159
             
Sbjct: 193 AA 194


>gi|325093407|gb|EGC46717.1| NADH-ubiquinone oxidoreductase [Ajellomyces capsulatus H88]
          Length = 240

 Score =  210 bits (535), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 94/134 (70%), Positives = 114/134 (85%)

Query: 43  VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL 102
           +D +  WAR GSL  ++ GLACC VEMM  SMPRYD +R G   RASPRQSD++IVAGT+
Sbjct: 93  IDAVTNWARQGSLWPVSLGLACCGVEMMAVSMPRYDQDRLGTIFRASPRQSDLLIVAGTV 152

Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162
           TNKMA ALR VYDQMP+P++VISMGSCANGGGYYHYSYSVVRG DR++PVD+++PGCPPT
Sbjct: 153 TNKMAPALRLVYDQMPDPKWVISMGSCANGGGYYHYSYSVVRGVDRLLPVDLFLPGCPPT 212

Query: 163 AEALIYGILLLQKK 176
           AEAL+Y + +L+KK
Sbjct: 213 AEALLYAMAVLRKK 226


>gi|296232412|ref|XP_002761582.1| PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 7,
           mitochondrial-like [Callithrix jacchus]
          Length = 305

 Score =  210 bits (534), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 107/176 (60%), Positives = 125/176 (71%), Gaps = 2/176 (1%)

Query: 6   VNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACC 65
           V+Q + +   S +   +    + +    +   ++V  +D L+ WAR  SL  MTFGLACC
Sbjct: 120 VHQTVATNGPSSTQPALPKARAVVPKPSSRGEYVVAKLDDLINWARRSSLWPMTFGLACC 179

Query: 66  AVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVIS 125
           AVEMM  + PRYD++RFG   RASPRQSDVMIVAGTLTNKMA ALRRV    P P     
Sbjct: 180 AVEMMHMAAPRYDMDRFGVVFRASPRQSDVMIVAGTLTNKMAPALRRVGRVGPWPPLPSR 239

Query: 126 M--GSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
               SCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQ+KI+R
Sbjct: 240 RLPHSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQRKIKR 295


>gi|290998039|ref|XP_002681588.1| predicted protein [Naegleria gruberi]
 gi|284095213|gb|EFC48844.1| predicted protein [Naegleria gruberi]
          Length = 174

 Score =  210 bits (534), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 99/142 (69%), Positives = 113/142 (79%), Gaps = 3/142 (2%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           FL   +  L  WART SL  ++FGLACCAVEMM  S  RYD+ER G   R +PRQSD MI
Sbjct: 6   FLKAPIHDLYAWARTSSLWPVSFGLACCAVEMMHTSASRYDIERMGIFYRPTPRQSDAMI 65

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           +AGTLTNKMA ALR+V+DQM EP+Y ISMGSCANGGGYYHYSY VVRG D+IVPVD+YVP
Sbjct: 66  IAGTLTNKMAPALRKVWDQMSEPKYSISMGSCANGGGYYHYSYHVVRGADQIVPVDVYVP 125

Query: 158 GCPPTAEALIYGILLLQKKIRR 179
           GCPPT   L+YGI +LQKKI+R
Sbjct: 126 GCPPT---LLYGIYMLQKKIKR 144


>gi|225563447|gb|EEH11726.1| NADH-ubiquinone oxidoreductase [Ajellomyces capsulatus G186AR]
          Length = 240

 Score =  210 bits (534), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 94/134 (70%), Positives = 114/134 (85%)

Query: 43  VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL 102
           +D +  WAR GSL  ++ GLACC VEMM  SMPRYD +R G   RASPRQSD++IVAGT+
Sbjct: 93  IDAVTNWARQGSLWPVSLGLACCGVEMMAVSMPRYDQDRLGTIFRASPRQSDLLIVAGTV 152

Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162
           TNKMA ALR VYDQMP+P++VISMGSCANGGGYYHYSYSVVRG DR++PVD+++PGCPPT
Sbjct: 153 TNKMAPALRLVYDQMPDPKWVISMGSCANGGGYYHYSYSVVRGVDRLLPVDLFLPGCPPT 212

Query: 163 AEALIYGILLLQKK 176
           AEAL+Y + +L+KK
Sbjct: 213 AEALLYAMAVLRKK 226


>gi|307069594|ref|YP_003878071.1| putative NADH:ubiquinone oxidoreductase, chain B [Candidatus
           Zinderia insecticola CARI]
 gi|306482854|gb|ADM89725.1| putative NADH:ubiquinone oxidoreductase, chain B [Candidatus
           Zinderia insecticola CARI]
          Length = 149

 Score =  209 bits (533), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 95/146 (65%), Positives = 117/146 (80%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           I++  F   S+ +L  W+ + SL  +TFGLACCA+EMM A   R+DL++FG   RASPRQ
Sbjct: 2   ISNTSFATFSIKKLKKWSYSKSLWPVTFGLACCAIEMMHAGSSRFDLDQFGLFFRASPRQ 61

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           SD++I+AGTL NKMA  LRR+YDQMP P++VISMGSCANGGGYYHYSYSVVRGC+ I+PV
Sbjct: 62  SDLIIIAGTLCNKMAPVLRRIYDQMPIPKWVISMGSCANGGGYYHYSYSVVRGCNNIIPV 121

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIR 178
           DIYVPGCPPT E L+Y I+ L+KKI 
Sbjct: 122 DIYVPGCPPTPETLLYSIIQLKKKIN 147


>gi|300123970|emb|CBK25241.2| unnamed protein product [Blastocystis hominis]
          Length = 274

 Score =  209 bits (531), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 92/140 (65%), Positives = 117/140 (83%)

Query: 40  VTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVA 99
           VT+VD+++ + R GS+   TFGLACCA+EM+ AS  R+D ER G  PRA+PRQ+D+MIV+
Sbjct: 125 VTTVDKVIGYCRAGSVFPQTFGLACCAMEMIDASSARFDFERLGMIPRATPRQADLMIVS 184

Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGC 159
           GT+TNKMA A+RR+YDQM EPRYVISMGSCAN GGYY YSY+VVRG DR+ PVD YVPGC
Sbjct: 185 GTVTNKMAPAIRRLYDQMSEPRYVISMGSCANSGGYYAYSYNVVRGVDRLFPVDYYVPGC 244

Query: 160 PPTAEALIYGILLLQKKIRR 179
           PPTA+ L+Y IL++ KK+++
Sbjct: 245 PPTADGLLYAILMVMKKLKQ 264


>gi|99034974|ref|ZP_01314777.1| hypothetical protein Wendoof_01000400 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
          Length = 161

 Score =  208 bits (530), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 102/142 (71%), Positives = 115/142 (80%), Gaps = 8/142 (5%)

Query: 23  DADFSRISSEITHKGFLVTS----VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78
           + D+ R   E    GFLVT      D ++ WAR+GSL  MTFGLACCAVEMM  +  RYD
Sbjct: 8   NDDWGRYKKE----GFLVTKFGDLTDYVMNWARSGSLWPMTFGLACCAVEMMHTASSRYD 63

Query: 79  LERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY 138
           L+R+G   RASPRQSDVMIVAGTLTNKMA+ALR+VYDQM +P+YVISMGSCANGGGYYHY
Sbjct: 64  LDRYGIMFRASPRQSDVMIVAGTLTNKMAAALRKVYDQMADPKYVISMGSCANGGGYYHY 123

Query: 139 SYSVVRGCDRIVPVDIYVPGCP 160
           SYSVVRGCDRIVPVD+YVPGCP
Sbjct: 124 SYSVVRGCDRIVPVDVYVPGCP 145


>gi|300175569|emb|CBK20880.2| subunit NuoB (NDUFS7) [Blastocystis hominis]
          Length = 220

 Score =  208 bits (530), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 92/140 (65%), Positives = 117/140 (83%)

Query: 40  VTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVA 99
           VT+VD+++ + R GS+   TFGLACCA+EM+ AS  R+D ER G  PRA+PRQ+D+MIV+
Sbjct: 71  VTTVDKVIGYCRAGSVFPQTFGLACCAMEMIDASSARFDFERLGMIPRATPRQADLMIVS 130

Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGC 159
           GT+TNKMA A+RR+YDQM EPRYVISMGSCAN GGYY YSY+VVRG DR+ PVD YVPGC
Sbjct: 131 GTVTNKMAPAIRRLYDQMSEPRYVISMGSCANSGGYYAYSYNVVRGVDRLFPVDYYVPGC 190

Query: 160 PPTAEALIYGILLLQKKIRR 179
           PPTA+ L+Y IL++ KK+++
Sbjct: 191 PPTADGLLYAILMVMKKLKQ 210


>gi|221039728|dbj|BAH11627.1| unnamed protein product [Homo sapiens]
          Length = 182

 Score =  207 bits (528), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 96/120 (80%), Positives = 105/120 (87%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           ++V  +D LV WAR  SL  MTFGLACCAVEMM  + PRYD++RFG   RASPRQSDVMI
Sbjct: 62  YVVAKLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQSDVMI 121

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGTLTNKMA ALR+VYDQMPEPRYV+SMGSCANGGGYYHYSYSVVRGCDRIVPVDIY+P
Sbjct: 122 VAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYIP 181


>gi|239610399|gb|EEQ87386.1| NADH-ubiquinone oxidoreductase 20 kDa subunit [Ajellomyces
           dermatitidis ER-3]
          Length = 245

 Score =  207 bits (528), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 93/141 (65%), Positives = 116/141 (82%)

Query: 37  GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVM 96
           G  + S+D +  W R  SL  ++ GLACC +EMM  SMPRYD +R G   RASPRQSD++
Sbjct: 92  GHFLGSIDAVANWGRQASLWPISLGLACCGLEMMAVSMPRYDQDRLGTIFRASPRQSDLL 151

Query: 97  IVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV 156
           IVAGT+TNKMA ALR VYDQMP+P++VISMGSCANGGGYYHYSYSVVRG DR++PVD+Y+
Sbjct: 152 IVAGTVTNKMAPALRLVYDQMPDPKWVISMGSCANGGGYYHYSYSVVRGVDRLLPVDVYL 211

Query: 157 PGCPPTAEALIYGILLLQKKI 177
           PGCPPTAEAL+Y I ++++K+
Sbjct: 212 PGCPPTAEALMYAISVVRRKL 232


>gi|261195670|ref|XP_002624239.1| NADH-ubiquinone oxidoreductase 20 kDa subunit [Ajellomyces
           dermatitidis SLH14081]
 gi|239588111|gb|EEQ70754.1| NADH-ubiquinone oxidoreductase 20 kDa subunit [Ajellomyces
           dermatitidis SLH14081]
          Length = 244

 Score =  207 bits (528), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 93/141 (65%), Positives = 116/141 (82%)

Query: 37  GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVM 96
           G  + S+D +  W R  SL  ++ GLACC +EMM  SMPRYD +R G   RASPRQSD++
Sbjct: 91  GHFLGSIDAVANWGRQASLWPISLGLACCGLEMMAVSMPRYDQDRLGTIFRASPRQSDLL 150

Query: 97  IVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV 156
           IVAGT+TNKMA ALR VYDQMP+P++VISMGSCANGGGYYHYSYSVVRG DR++PVD+Y+
Sbjct: 151 IVAGTVTNKMAPALRLVYDQMPDPKWVISMGSCANGGGYYHYSYSVVRGVDRLLPVDVYL 210

Query: 157 PGCPPTAEALIYGILLLQKKI 177
           PGCPPTAEAL+Y I ++++K+
Sbjct: 211 PGCPPTAEALMYAISVVRRKL 231


>gi|327349174|gb|EGE78031.1| NADH-ubiquinone oxidoreductase 20 kDa subunit [Ajellomyces
           dermatitidis ATCC 18188]
          Length = 172

 Score =  207 bits (527), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 93/141 (65%), Positives = 116/141 (82%)

Query: 37  GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVM 96
           G  + S+D +  W R  SL  ++ GLACC +EMM  SMPRYD +R G   RASPRQSD++
Sbjct: 19  GHFLGSIDAVANWGRQASLWPISLGLACCGLEMMAVSMPRYDQDRLGTIFRASPRQSDLL 78

Query: 97  IVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV 156
           IVAGT+TNKMA ALR VYDQMP+P++VISMGSCANGGGYYHYSYSVVRG DR++PVD+Y+
Sbjct: 79  IVAGTVTNKMAPALRLVYDQMPDPKWVISMGSCANGGGYYHYSYSVVRGVDRLLPVDVYL 138

Query: 157 PGCPPTAEALIYGILLLQKKI 177
           PGCPPTAEAL+Y I ++++K+
Sbjct: 139 PGCPPTAEALMYAISVVRRKL 159


>gi|238493105|ref|XP_002377789.1| formate hydrogenlyase, putative [Aspergillus flavus NRRL3357]
 gi|220696283|gb|EED52625.1| formate hydrogenlyase, putative [Aspergillus flavus NRRL3357]
          Length = 228

 Score =  206 bits (525), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 104/142 (73%), Positives = 121/142 (85%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           + +T+ DQL+ WAR GSL  +TF LACC +EMM  SMPRYD +R G   RASPRQ+DVMI
Sbjct: 77  YFLTTTDQLINWARQGSLWPLTFALACCGIEMMHVSMPRYDQDRLGIIFRASPRQADVMI 136

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGT+TNKMA ALR++YDQMP+P++VISMGSCANGGGYY+YSYSVVRG DR+VPVDIYVP
Sbjct: 137 VAGTVTNKMAPALRQLYDQMPDPKWVISMGSCANGGGYYYYSYSVVRGVDRVVPVDIYVP 196

Query: 158 GCPPTAEALIYGILLLQKKIRR 179
           GCPPT EAL+Y I  LQKKIRR
Sbjct: 197 GCPPTPEALMYAIFQLQKKIRR 218


>gi|147744666|gb|ABQ51200.1| NADH dehydrogenase (ubiquinone) Fe-S protein 7 [Capra hircus]
          Length = 183

 Score =  206 bits (524), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 95/119 (79%), Positives = 104/119 (87%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           ++V  +D L+ WAR  SL  MTFGLACCAVEMM  + PRYD++RFG   RASPRQSDVMI
Sbjct: 65  YVVAKLDDLINWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQSDVMI 124

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV 156
           VAGTLTNKMA ALR+VYDQMPEPRYV+SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV
Sbjct: 125 VAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV 183


>gi|322801771|gb|EFZ22368.1| hypothetical protein SINV_15858 [Solenopsis invicta]
          Length = 189

 Score =  206 bits (524), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 93/121 (76%), Positives = 105/121 (86%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           + +  VD ++ W R GSL  MTFGLACCAVEMM  + PRYD++RFG   RASPRQSDV+I
Sbjct: 69  YALARVDDILNWGRKGSLWPMTFGLACCAVEMMHIAAPRYDMDRFGVVFRASPRQSDVII 128

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGTLTNKMA ALR++YDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRI+PVDIYVP
Sbjct: 129 VAGTLTNKMAPALRKIYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVP 188

Query: 158 G 158
           G
Sbjct: 189 G 189


>gi|76811559|ref|YP_334953.1| NADH dehydrogenase subunit B [Burkholderia pseudomallei 1710b]
 gi|76581012|gb|ABA50487.1| NADH-quinone oxidoreductase, B subunit [Burkholderia pseudomallei
           1710b]
          Length = 226

 Score =  205 bits (521), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 104/145 (71%), Positives = 123/145 (84%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           +   GF+VT++D  +  A+  SL +MTFGLA CAVEMM A+  RYD++RFG  PRASPRQ
Sbjct: 67  LEKDGFIVTTLDAAMAAAQKNSLWYMTFGLARCAVEMMHAAGARYDMDRFGMIPRASPRQ 126

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
            D+MIVAGTLTNKMA A+RRVYDQM EPRYV+SMGSCANGGGYYHY YSVVRGCDRIVPV
Sbjct: 127 CDLMIVAGTLTNKMAPAMRRVYDQMAEPRYVVSMGSCANGGGYYHYGYSVVRGCDRIVPV 186

Query: 153 DIYVPGCPPTAEALIYGILLLQKKI 177
           D+YVPGCPPTAEAL+Y ++ LQ+K+
Sbjct: 187 DVYVPGCPPTAEALVYDLMQLQRKV 211


>gi|254259706|ref|ZP_04950760.1| putative NADH-quinone oxidoreductase, B subunit [Burkholderia
           pseudomallei 1710a]
 gi|218528075|sp|Q3JNA0|NUOB2_BURP1 RecName: Full=Putative NADH-quinone oxidoreductase subunit B 2;
           AltName: Full=NADH dehydrogenase I subunit B 2; AltName:
           Full=NDH-1 subunit B 2
 gi|254218395|gb|EET07779.1| putative NADH-quinone oxidoreductase, B subunit [Burkholderia
           pseudomallei 1710a]
          Length = 167

 Score =  204 bits (520), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 104/145 (71%), Positives = 123/145 (84%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           +   GF+VT++D  +  A+  SL +MTFGLA CAVEMM A+  RYD++RFG  PRASPRQ
Sbjct: 8   LEKDGFIVTTLDAAMAAAQKNSLWYMTFGLARCAVEMMHAAGARYDMDRFGMIPRASPRQ 67

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
            D+MIVAGTLTNKMA A+RRVYDQM EPRYV+SMGSCANGGGYYHY YSVVRGCDRIVPV
Sbjct: 68  CDLMIVAGTLTNKMAPAMRRVYDQMAEPRYVVSMGSCANGGGYYHYGYSVVRGCDRIVPV 127

Query: 153 DIYVPGCPPTAEALIYGILLLQKKI 177
           D+YVPGCPPTAEAL+Y ++ LQ+K+
Sbjct: 128 DVYVPGCPPTAEALVYDLMQLQRKV 152


>gi|83774873|dbj|BAE64996.1| unnamed protein product [Aspergillus oryzae]
          Length = 176

 Score =  203 bits (517), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 104/141 (73%), Positives = 121/141 (85%)

Query: 39  LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIV 98
           ++T+ DQL+ WAR GSL  +TF LACC +EMM  SMPRYD +R G   RASPRQ+DVMIV
Sbjct: 26  ILTTTDQLINWARQGSLWPLTFALACCGIEMMHVSMPRYDQDRLGIIFRASPRQADVMIV 85

Query: 99  AGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPG 158
           AGT+TNKMA ALR++YDQMP+P++VISMGSCANGGGYY+YSYSVVRG DR+VPVDIYVPG
Sbjct: 86  AGTVTNKMAPALRQLYDQMPDPKWVISMGSCANGGGYYYYSYSVVRGVDRVVPVDIYVPG 145

Query: 159 CPPTAEALIYGILLLQKKIRR 179
           CPPT EAL+Y I  LQKKIRR
Sbjct: 146 CPPTPEALMYAIFQLQKKIRR 166


>gi|317156952|ref|XP_001826129.2| NADH dehydrogenase [ubiquinone] iron-sulfur protein 7 [Aspergillus
           oryzae RIB40]
          Length = 155

 Score =  202 bits (515), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 104/139 (74%), Positives = 119/139 (85%)

Query: 41  TSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAG 100
           T+ DQL+ WAR GSL  +TF LACC +EMM  SMPRYD +R G   RASPRQ+DVMIVAG
Sbjct: 7   TTTDQLINWARQGSLWPLTFALACCGIEMMHVSMPRYDQDRLGIIFRASPRQADVMIVAG 66

Query: 101 TLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCP 160
           T+TNKMA ALR++YDQMP+P++VISMGSCANGGGYY+YSYSVVRG DR+VPVDIYVPGCP
Sbjct: 67  TVTNKMAPALRQLYDQMPDPKWVISMGSCANGGGYYYYSYSVVRGVDRVVPVDIYVPGCP 126

Query: 161 PTAEALIYGILLLQKKIRR 179
           PT EAL+Y I  LQKKIRR
Sbjct: 127 PTPEALMYAIFQLQKKIRR 145


>gi|110636931|ref|YP_677138.1| NADH:ubiquinone oxidoreductase [Cytophaga hutchinsonii ATCC 33406]
 gi|110279612|gb|ABG57798.1| NADH dehydrogenase subunit B [Cytophaga hutchinsonii ATCC 33406]
          Length = 184

 Score =  202 bits (513), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 96/154 (62%), Positives = 117/154 (75%), Gaps = 1/154 (0%)

Query: 27  SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP 86
           S +  +    G +V+ ++ ++ WAR  SL  M+FGLACCA+EMMQ     YDL+RFG  P
Sbjct: 8   SLLDHKFGQGGIVVSQLEDVLNWARLSSLFPMSFGLACCAIEMMQTFTSGYDLDRFGVIP 67

Query: 87  RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCAN-GGGYYHYSYSVVRG 145
           R SPRQSDVMIVAGT+T KMA  +RR+Y+QMPEPRYVISMGSC+N GG Y+ + Y VV+G
Sbjct: 68  RPSPRQSDVMIVAGTVTFKMADRIRRLYEQMPEPRYVISMGSCSNCGGPYWEHGYHVVKG 127

Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
            DRIVPVDIYVPGCPP  EALI G L LQ+KIR+
Sbjct: 128 VDRIVPVDIYVPGCPPRPEALIGGFLKLQEKIRK 161


>gi|238065078|sp|Q11XR8|NUOB1_CYTH3 RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName:
           Full=NADH dehydrogenase I subunit B 1; AltName:
           Full=NDH-1 subunit B 1
          Length = 178

 Score =  201 bits (512), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 96/154 (62%), Positives = 117/154 (75%), Gaps = 1/154 (0%)

Query: 27  SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP 86
           S +  +    G +V+ ++ ++ WAR  SL  M+FGLACCA+EMMQ     YDL+RFG  P
Sbjct: 2   SLLDHKFGQGGIVVSQLEDVLNWARLSSLFPMSFGLACCAIEMMQTFTSGYDLDRFGVIP 61

Query: 87  RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCAN-GGGYYHYSYSVVRG 145
           R SPRQSDVMIVAGT+T KMA  +RR+Y+QMPEPRYVISMGSC+N GG Y+ + Y VV+G
Sbjct: 62  RPSPRQSDVMIVAGTVTFKMADRIRRLYEQMPEPRYVISMGSCSNCGGPYWEHGYHVVKG 121

Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
            DRIVPVDIYVPGCPP  EALI G L LQ+KIR+
Sbjct: 122 VDRIVPVDIYVPGCPPRPEALIGGFLKLQEKIRK 155


>gi|327398400|ref|YP_004339269.1| NAD(P)H-quinone oxidoreductase subunit K [Hippea maritima DSM
           10411]
 gi|327181029|gb|AEA33210.1| NAD(P)H-quinone oxidoreductase subunit K [Hippea maritima DSM
           10411]
          Length = 153

 Score =  201 bits (510), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 94/147 (63%), Positives = 117/147 (79%), Gaps = 1/147 (0%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           ++ T +D+LV+WAR  SL  MTFGLACCA+EMM     R+DL+RFG   RASPR SD+MI
Sbjct: 7   WITTKLDKLVSWARYSSLWPMTFGLACCAIEMMATGASRFDLDRFGVVFRASPRHSDIMI 66

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           +AGTLT KMA A R+VYDQMP P++VISMGSCAN GG +  +YSVV+G D I+PVD+YVP
Sbjct: 67  IAGTLTKKMAIAARKVYDQMPHPKWVISMGSCANTGGMFD-TYSVVQGVDTIMPVDVYVP 125

Query: 158 GCPPTAEALIYGILLLQKKIRRVGNVK 184
           GCPP  E L+YGI+ LQ+KIRR G++K
Sbjct: 126 GCPPRPEGLLYGIMKLQEKIRREGSMK 152


>gi|21673597|ref|NP_661662.1| NADH dehydrogenase I, 20 kDa subunit [Chlorobium tepidum TLS]
 gi|81791547|sp|Q8KEC2|NUOB_CHLTE RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|21646711|gb|AAM72004.1| NADH dehydrogenase I, 20 kdA subunit [Chlorobium tepidum TLS]
          Length = 189

 Score =  199 bits (507), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 92/154 (59%), Positives = 119/154 (77%), Gaps = 1/154 (0%)

Query: 29  ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88
           + + I+++  LVTSVD ++ WAR  SL  M FGLACCA+EMM  +   YDLERFG  PR+
Sbjct: 4   LDARISNRNVLVTSVDNVMNWARLSSLWPMGFGLACCAIEMMATNASNYDLERFGIFPRS 63

Query: 89  SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGG-YYHYSYSVVRGCD 147
           SPRQSD+MIVAGT+T KMA  +  +Y+QMPEPRYV+SMGSC+N GG Y+H+ Y V++G D
Sbjct: 64  SPRQSDLMIVAGTVTMKMAERVVTLYEQMPEPRYVLSMGSCSNSGGPYWHHGYHVLKGVD 123

Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
           RI+PVD+YVPGCPP  EALI G++ +Q+ IR  G
Sbjct: 124 RIIPVDVYVPGCPPRPEALIGGLMKIQELIRMEG 157


>gi|254670954|emb|CBA07618.1| NADH-ubiquinone oxidoreductase, 20 kDa subunit [Neisseria
           meningitidis alpha153]
          Length = 158

 Score =  199 bits (507), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 93/126 (73%), Positives = 107/126 (84%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           +  KGF+ TS D ++ + RTGSL  +TFGLACCAVEMM A M RYDL+RFG   R SPRQ
Sbjct: 6   VLKKGFITTSADTVLNYMRTGSLWPVTFGLACCAVEMMHAGMARYDLDRFGIIFRPSPRQ 65

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           +D+MIVAGTLTNKMA ALRRVYDQ+ EPR+V+SMGSCANGGGYYHYSYSVVRG DR+VPV
Sbjct: 66  ADLMIVAGTLTNKMAPALRRVYDQLAEPRWVLSMGSCANGGGYYHYSYSVVRGADRVVPV 125

Query: 153 DIYVPG 158
           D+YVPG
Sbjct: 126 DVYVPG 131


>gi|295697744|ref|YP_003590982.1| NADH-quinone oxidoreductase, B subunit [Bacillus tusciae DSM 2912]
 gi|295413346|gb|ADG07838.1| NADH-quinone oxidoreductase, B subunit [Bacillus tusciae DSM 2912]
          Length = 183

 Score =  199 bits (506), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 90/149 (60%), Positives = 118/149 (79%)

Query: 30  SSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS 89
           S+++T  G LV++++QL  WAR+ SL  +TFGLACCA+EMM      YDL+RFG   RAS
Sbjct: 25  SADLTRAGVLVSTIEQLKAWARSNSLWPLTFGLACCAIEMMGTGASHYDLDRFGIIFRAS 84

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQSDVMIVAGT+T KM   LRR+YDQMP+P++V++MGSCA  GG Y  SY+V++G D++
Sbjct: 85  PRQSDVMIVAGTVTKKMGPLLRRLYDQMPDPKWVVAMGSCATAGGPYVRSYAVMKGVDQV 144

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           VPVD+Y+PGCPP+  ALIYG+  LQ+KIR
Sbjct: 145 VPVDVYIPGCPPSPPALIYGLNKLQEKIR 173


>gi|294661316|ref|YP_003573192.1| hypothetical protein Aasi_1809 [Candidatus Amoebophilus asiaticus
           5a2]
 gi|227336467|gb|ACP21064.1| hypothetical protein Aasi_1809 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 173

 Score =  198 bits (503), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 93/161 (57%), Positives = 121/161 (75%), Gaps = 1/161 (0%)

Query: 19  LEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78
           + +++     IS++    G ++ +++ L+ WA   SL  +TFGLACCA+EMM A    YD
Sbjct: 7   INQINNYMDTISNKTGEGGVIMVALEDLLNWAERSSLWPITFGLACCAIEMMGAYASHYD 66

Query: 79  LERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCAN-GGGYYH 137
           L+R G  PR SPRQ+DVMIV+GT+T KMA ++RR+YDQMPEPRYVISMGSCAN GG Y+ 
Sbjct: 67  LDRLGVIPRNSPRQADVMIVSGTVTFKMADSIRRLYDQMPEPRYVISMGSCANCGGPYWQ 126

Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           + Y VV+G DRI+PVD+YVPGCPP  EALI GIL LQ+KI+
Sbjct: 127 HGYHVVKGVDRIIPVDVYVPGCPPRPEALIGGILKLQEKIK 167


>gi|56421890|ref|YP_149208.1| NADH dehydrogenase subunit B [Geobacillus kaustophilus HTA426]
 gi|261420760|ref|YP_003254442.1| NADH dehydrogenase subunit B [Geobacillus sp. Y412MC61]
 gi|297531555|ref|YP_003672830.1| NADH-quinone oxidoreductase subunit beta [Geobacillus sp. C56-T3]
 gi|319768430|ref|YP_004133931.1| NADH-quinone oxidoreductase, B subunit [Geobacillus sp. Y412MC52]
 gi|81346274|sp|Q5KUJ6|NUOB_GEOKA RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|56381732|dbj|BAD77640.1| NADH:ubiquinone oxidoreductase chain B (Fe-S oxidoreductases)
           [Geobacillus kaustophilus HTA426]
 gi|261377217|gb|ACX79960.1| NADH-quinone oxidoreductase, B subunit [Geobacillus sp. Y412MC61]
 gi|297254807|gb|ADI28253.1| NADH-quinone oxidoreductase, B subunit [Geobacillus sp. C56-T3]
 gi|317113296|gb|ADU95788.1| NADH-quinone oxidoreductase, B subunit [Geobacillus sp. Y412MC52]
          Length = 170

 Score =  197 bits (502), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 93/153 (60%), Positives = 116/153 (75%)

Query: 26  FSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA 85
           FS +  E   +   +T+++QL  WAR+ SL  +TFGLACCA+EMM      YDL+RFG  
Sbjct: 8   FSGVEMEEVKRNVFLTTLEQLKGWARSSSLWPLTFGLACCAIEMMAVGGAHYDLDRFGSF 67

Query: 86  PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRG 145
            RASPRQ+DVMIV+GT+T KMA  LRR+YDQMPEP++VI+MGSCA  GG Y  SYSVV+G
Sbjct: 68  FRASPRQADVMIVSGTVTKKMAPLLRRLYDQMPEPKWVIAMGSCATAGGPYVKSYSVVKG 127

Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
            D+IVPVD+Y+PGCPP   ALIYGI  L++KIR
Sbjct: 128 VDQIVPVDVYIPGCPPNPAALIYGIHKLKEKIR 160


>gi|164662629|ref|XP_001732436.1| hypothetical protein MGL_0211 [Malassezia globosa CBS 7966]
 gi|159106339|gb|EDP45222.1| hypothetical protein MGL_0211 [Malassezia globosa CBS 7966]
          Length = 120

 Score =  197 bits (501), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 92/110 (83%), Positives = 101/110 (91%)

Query: 70  MQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSC 129
           M AS PRYD +R G   RA+PRQSD+MIVAGTLTNKMA ALR+VYDQMPEPR+VISMGSC
Sbjct: 1   MHASGPRYDQDRLGIVFRATPRQSDIMIVAGTLTNKMAPALRKVYDQMPEPRWVISMGSC 60

Query: 130 ANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           ANGGGYYHYSYSVVRGCDRIVPVD+YVPGCPP+AEAL+YGIL LQ+KIRR
Sbjct: 61  ANGGGYYHYSYSVVRGCDRIVPVDLYVPGCPPSAEALLYGILQLQRKIRR 110


>gi|194333676|ref|YP_002015536.1| NADH dehydrogenase subunit B [Prosthecochloris aestuarii DSM 271]
 gi|238065190|sp|B4S752|NUOB_PROA2 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|194311494|gb|ACF45889.1| NADH-quinone oxidoreductase, B subunit [Prosthecochloris aestuarii
           DSM 271]
          Length = 190

 Score =  197 bits (501), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 91/151 (60%), Positives = 118/151 (78%), Gaps = 1/151 (0%)

Query: 29  ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88
           + ++I++   LVTSVD ++ WAR  SL  M FGLACCA+EMM  +   YDLERFG  PR+
Sbjct: 4   LDAKISNHNVLVTSVDNVLNWARLSSLWPMGFGLACCAIEMMATNASNYDLERFGIFPRS 63

Query: 89  SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCAN-GGGYYHYSYSVVRGCD 147
           SPRQSD+MIVAGT+T KMA  + R+Y+QMPEPRYV+SMGSC+N GG Y+ + Y V++G D
Sbjct: 64  SPRQSDLMIVAGTVTMKMAERVIRLYEQMPEPRYVLSMGSCSNCGGPYWKHGYHVLKGVD 123

Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           RI+PVD+YVPGCPP  EALI G++ +Q+ IR
Sbjct: 124 RIIPVDVYVPGCPPRPEALIGGLMKVQELIR 154


>gi|189500538|ref|YP_001960008.1| NADH dehydrogenase subunit B [Chlorobium phaeobacteroides BS1]
 gi|238055285|sp|B3EKA0|NUOB_CHLPB RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|189495979|gb|ACE04527.1| NADH-quinone oxidoreductase, B subunit [Chlorobium phaeobacteroides
           BS1]
          Length = 190

 Score =  197 bits (500), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 91/151 (60%), Positives = 118/151 (78%), Gaps = 1/151 (0%)

Query: 29  ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88
           + ++I++   LVTSVD ++ WAR  SL  M FGLACCA+EMM  +   YDLERFG  PR+
Sbjct: 4   LDAKISNHNVLVTSVDNVLNWARLSSLWPMGFGLACCAIEMMATNASNYDLERFGIFPRS 63

Query: 89  SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCAN-GGGYYHYSYSVVRGCD 147
           SPRQSD+MIVAGT+T KMA  + R+Y+QMPEPRYV+SMGSC+N GG Y+ + Y V++G D
Sbjct: 64  SPRQSDLMIVAGTVTMKMAERVIRLYEQMPEPRYVLSMGSCSNCGGPYWKHGYHVLKGVD 123

Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           RI+PVD+YVPGCPP  EALI G++ +Q+ IR
Sbjct: 124 RIIPVDVYVPGCPPRPEALIGGLMKVQELIR 154


>gi|255036234|ref|YP_003086855.1| NADH-quinone oxidoreductase, B subunit [Dyadobacter fermentans DSM
           18053]
 gi|254948990|gb|ACT93690.1| NADH-quinone oxidoreductase, B subunit [Dyadobacter fermentans DSM
           18053]
          Length = 176

 Score =  197 bits (500), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 93/143 (65%), Positives = 111/143 (77%), Gaps = 1/143 (0%)

Query: 37  GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVM 96
           G ++T+ + L+ WAR  SL  M FGLACCA+EMM      YDLERFG  PR SPRQSDVM
Sbjct: 11  GIILTNAEDLMNWARLSSLWPMGFGLACCAIEMMATYAANYDLERFGIMPRPSPRQSDVM 70

Query: 97  IVAGTLTNKMASALRRVYDQMPEPRYVISMGSCAN-GGGYYHYSYSVVRGCDRIVPVDIY 155
           IVAGT+T KMA  +RR+Y+QMPEPRYVISMGSC+N GG Y+ + Y VV+G DRI+PVD+Y
Sbjct: 71  IVAGTVTFKMADRIRRLYEQMPEPRYVISMGSCSNCGGPYWEHGYHVVKGVDRIIPVDVY 130

Query: 156 VPGCPPTAEALIYGILLLQKKIR 178
           VPGCPP  EALI G + LQ+KIR
Sbjct: 131 VPGCPPRPEALIGGFMKLQEKIR 153


>gi|226315029|ref|YP_002774925.1| NADH dehydrogenase subunit B [Brevibacillus brevis NBRC 100599]
 gi|259514656|sp|C0Z772|NUOB_BREBN RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|226097979|dbj|BAH46421.1| NADH-quinone oxidoreductase chain B [Brevibacillus brevis NBRC
           100599]
          Length = 172

 Score =  197 bits (500), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 94/160 (58%), Positives = 120/160 (75%), Gaps = 3/160 (1%)

Query: 22  VDADFSRISSEIT---HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78
           ++ D + I+ E+    ++  + T+++ +  W R+ SL  +TFGLACCA+EMM     RYD
Sbjct: 1   MELDLTSIAPELQEELNRNVMFTTLETVKGWVRSNSLWPLTFGLACCAIEMMGTGGARYD 60

Query: 79  LERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY 138
           L+RFG   RASPRQSDVMIVAGT+T KMA  LRR+YDQMPEP++VI+MGSCA  GG Y  
Sbjct: 61  LDRFGVIFRASPRQSDVMIVAGTVTKKMAPLLRRLYDQMPEPKWVIAMGSCATAGGPYVR 120

Query: 139 SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           SYSVV+G D+IVPVD+Y+PGCPP   ALIYGI  LQ+KIR
Sbjct: 121 SYSVVKGVDQIVPVDVYIPGCPPNPAALIYGINKLQEKIR 160


>gi|238065051|sp|B3ET80|NUOB_AMOA5 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
          Length = 160

 Score =  197 bits (500), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 93/151 (61%), Positives = 117/151 (77%), Gaps = 1/151 (0%)

Query: 29  ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88
           IS++    G ++ +++ L+ WA   SL  +TFGLACCA+EMM A    YDL+R G  PR 
Sbjct: 4   ISNKTGEGGVIMVALEDLLNWAERSSLWPITFGLACCAIEMMGAYASHYDLDRLGVIPRN 63

Query: 89  SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCAN-GGGYYHYSYSVVRGCD 147
           SPRQ+DVMIV+GT+T KMA ++RR+YDQMPEPRYVISMGSCAN GG Y+ + Y VV+G D
Sbjct: 64  SPRQADVMIVSGTVTFKMADSIRRLYDQMPEPRYVISMGSCANCGGPYWQHGYHVVKGVD 123

Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           RI+PVD+YVPGCPP  EALI GIL LQ+KI+
Sbjct: 124 RIIPVDVYVPGCPPRPEALIGGILKLQEKIK 154


>gi|332971775|gb|EGK10723.1| NADH-quinone oxidoreductase subunit B [Desmospora sp. 8437]
          Length = 175

 Score =  197 bits (500), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 92/144 (63%), Positives = 110/144 (76%)

Query: 35  HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSD 94
            +    T+++ +  WAR+ SL  MTFGLACCA+EMM    P YDL+RFG   RASPRQSD
Sbjct: 17  QRNVFTTTLENVKAWARSNSLWPMTFGLACCAIEMMGTGAPHYDLDRFGSFFRASPRQSD 76

Query: 95  VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154
           VMIVAGT+T KM   LRR+YDQMPEP++VI+MGSCA  GG Y  SYSVV+G D+IVPVD+
Sbjct: 77  VMIVAGTVTKKMGPLLRRLYDQMPEPKWVIAMGSCATAGGPYVKSYSVVKGVDQIVPVDV 136

Query: 155 YVPGCPPTAEALIYGILLLQKKIR 178
           Y+PGCPP   ALIYGI  LQ+KIR
Sbjct: 137 YIPGCPPNPAALIYGIHKLQEKIR 160


>gi|145219899|ref|YP_001130608.1| NADH-quinone oxidoreductase, B subunit [Prosthecochloris
           vibrioformis DSM 265]
 gi|238065192|sp|A4SF47|NUOB_PROVI RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|145206063|gb|ABP37106.1| NADH dehydrogenase subunit B [Chlorobium phaeovibrioides DSM 265]
          Length = 189

 Score =  196 bits (498), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 90/154 (58%), Positives = 118/154 (76%), Gaps = 1/154 (0%)

Query: 29  ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88
           + + ++ +  LVTSVD ++ WAR  SL  M FGLACCA+EMM  +   YDLERFG  PR+
Sbjct: 4   LDAAVSRQNVLVTSVDSVLNWARLSSLWPMGFGLACCAIEMMATNASNYDLERFGIFPRS 63

Query: 89  SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCAN-GGGYYHYSYSVVRGCD 147
           SPRQSD+MIVAGT+T KMA  + R+Y+QMPEPRYV+SMGSC+N GG Y+ + Y V++G D
Sbjct: 64  SPRQSDLMIVAGTVTMKMAERVVRLYEQMPEPRYVLSMGSCSNCGGPYWEHGYHVLKGVD 123

Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
           R++PVD+YVPGCPP  EALI G++ +Q+ IR  G
Sbjct: 124 RVIPVDVYVPGCPPRPEALIGGLMKIQELIRMEG 157


>gi|78188613|ref|YP_378951.1| NADH dehydrogenase subunit B [Chlorobium chlorochromatii CaD3]
 gi|123580176|sp|Q3ASW7|NUOB_CHLCH RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|78170812|gb|ABB27908.1| NADH dehydrogenase subunit B [Chlorobium chlorochromatii CaD3]
          Length = 190

 Score =  196 bits (497), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 90/151 (59%), Positives = 117/151 (77%), Gaps = 1/151 (0%)

Query: 29  ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88
           + + IT+   LVTSVD ++ WAR  SL  M FGLACCA+EMM  +   YDLERFG  PR+
Sbjct: 4   LDAGITNHNVLVTSVDNVLNWARLSSLWPMGFGLACCAIEMMATNASNYDLERFGIFPRS 63

Query: 89  SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGG-YYHYSYSVVRGCD 147
           SPRQSD+M+VAGT+T KMA  + R+Y+QMPEPRYV+SMGSC+N GG Y+ + Y V++G D
Sbjct: 64  SPRQSDLMLVAGTVTMKMAERVIRLYEQMPEPRYVLSMGSCSNSGGPYWEHGYHVLKGVD 123

Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           RI+PVD+YVPGCPP  E+LI G++ +Q+ IR
Sbjct: 124 RIIPVDVYVPGCPPRPESLIGGLMKVQELIR 154


>gi|110598466|ref|ZP_01386737.1| NADH-quinone oxidoreductase, B subunit [Chlorobium ferrooxidans DSM
           13031]
 gi|110339916|gb|EAT58420.1| NADH-quinone oxidoreductase, B subunit [Chlorobium ferrooxidans DSM
           13031]
          Length = 189

 Score =  195 bits (496), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 90/151 (59%), Positives = 116/151 (76%), Gaps = 1/151 (0%)

Query: 29  ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88
           + + IT    LVTSVD ++ WAR  S+  M FGLACCA+EMM  +   YDLERFG  PR+
Sbjct: 4   LDAGITKHNVLVTSVDNVLNWARLSSIWPMGFGLACCAIEMMATNASNYDLERFGIFPRS 63

Query: 89  SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCAN-GGGYYHYSYSVVRGCD 147
           SPRQSD+MIVAGT+T KMA  + R+Y+QMPEPRYV+SMGSC+N GG Y+ + Y V++G D
Sbjct: 64  SPRQSDLMIVAGTVTMKMAERVVRLYEQMPEPRYVLSMGSCSNCGGPYWEHGYHVLKGVD 123

Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           R++PVD+YVPGCPP  EALI G++ +Q+ IR
Sbjct: 124 RVIPVDVYVPGCPPRPEALIGGLMKIQELIR 154


>gi|193212957|ref|YP_001998910.1| NADH dehydrogenase subunit B [Chlorobaculum parvum NCIB 8327]
 gi|238055284|sp|B3QP57|NUOB_CHLP8 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|193086434|gb|ACF11710.1| NADH-quinone oxidoreductase, B subunit [Chlorobaculum parvum NCIB
           8327]
          Length = 189

 Score =  195 bits (495), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 89/154 (57%), Positives = 119/154 (77%), Gaps = 1/154 (0%)

Query: 29  ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88
           + ++++++  LVTSVD ++ WAR  SL  M FGLACCA+EMM  +   YDLERFG  PR+
Sbjct: 4   LDAKVSNRNVLVTSVDNVMNWARLSSLWPMGFGLACCAIEMMATNASNYDLERFGIFPRS 63

Query: 89  SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCAN-GGGYYHYSYSVVRGCD 147
           SPRQSD+MIVAGT+T KMA  +  +Y+QMPEPRYV+SMGSC+N GG Y+ + Y V++G D
Sbjct: 64  SPRQSDLMIVAGTVTMKMAERVVTLYEQMPEPRYVLSMGSCSNCGGPYWDHGYHVLKGVD 123

Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
           R++PVD+YVPGCPP  EALI G++ +Q+ IR  G
Sbjct: 124 RVIPVDVYVPGCPPRPEALIGGLMKIQELIRMEG 157


>gi|295400695|ref|ZP_06810672.1| NADH-quinone oxidoreductase, B subunit [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|312112611|ref|YP_003990927.1| NADH-quinone oxidoreductase subunit beta [Geobacillus sp. Y4.1MC1]
 gi|294977276|gb|EFG52877.1| NADH-quinone oxidoreductase, B subunit [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|311217712|gb|ADP76316.1| NADH-quinone oxidoreductase, B subunit [Geobacillus sp. Y4.1MC1]
          Length = 170

 Score =  195 bits (495), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 95/148 (64%), Positives = 114/148 (77%), Gaps = 1/148 (0%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP 90
            EI    FL T+++QL  WAR+ SL  +TFGLACCA+EMM      YDL+RFG   RASP
Sbjct: 14  EEIKRNVFL-TTLEQLKAWARSNSLWPLTFGLACCAIEMMGVGGSHYDLDRFGSFFRASP 72

Query: 91  RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150
           RQSDVMIV+GT+T KMA  LRR+YDQMPEP++VI+MGSCA  GG Y  SYSVV+G D+IV
Sbjct: 73  RQSDVMIVSGTVTKKMAPLLRRLYDQMPEPKWVIAMGSCATAGGPYVKSYSVVKGVDQIV 132

Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIR 178
           PVD+Y+PGCPP   ALIYGI  L++KIR
Sbjct: 133 PVDVYIPGCPPNPAALIYGINKLKEKIR 160


>gi|162457344|ref|YP_001619711.1| NADH dehydrogenase (ubiquinone) [Sorangium cellulosum 'So ce 56']
 gi|238065042|sp|A9G9S9|NUOB2_SORC5 RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName:
           Full=NADH dehydrogenase I subunit B 2; AltName:
           Full=NDH-1 subunit B 2
 gi|161167926|emb|CAN99231.1| NADH dehydrogenase (ubiquinone) [Sorangium cellulosum 'So ce 56']
          Length = 182

 Score =  195 bits (495), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 90/151 (59%), Positives = 116/151 (76%), Gaps = 4/151 (2%)

Query: 32  EITHKGFLVTSVDQ----LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
           E    G + TSVDQ    L+ W R+ S+ +M FGLACCA+E+MQ   PR DLERFG APR
Sbjct: 19  ESDGGGVITTSVDQTVNWLLNWGRSNSVWYMLFGLACCAIELMQTGGPRGDLERFGAAPR 78

Query: 88  ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCD 147
            SPR SD+ I+AGTLT KMA+ ++R+YDQM EPR+VISMGSC+N GG + Y+YSV +G D
Sbjct: 79  PSPRSSDLFIIAGTLTYKMATRVKRLYDQMSEPRFVISMGSCSNCGGLFQYAYSVCKGVD 138

Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           +I+PVD+YVPGCPP  EAL+ G+L +Q+KI+
Sbjct: 139 QIIPVDVYVPGCPPRPEALLEGLLKIQEKIK 169


>gi|138896932|ref|YP_001127385.1| NADH dehydrogenase subunit B [Geobacillus thermodenitrificans
           NG80-2]
 gi|238065154|sp|A4ITI6|NUOB_GEOTN RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|134268445|gb|ABO68640.1| NADH-quinone oxidoreductase chain B [Geobacillus
           thermodenitrificans NG80-2]
          Length = 170

 Score =  194 bits (494), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 92/147 (62%), Positives = 112/147 (76%)

Query: 32  EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPR 91
           E   +    T+++QL  WAR+ SL  +TFGLACCA+EMM      YDL+RFG   RASPR
Sbjct: 14  EEVKRNVFFTTLEQLKGWARSNSLWPLTFGLACCAIEMMAVGGAHYDLDRFGSFFRASPR 73

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
           QSDVMIV+GT+T KMA  LRR+YDQMPEP++VI+MGSCA  GG Y  SYSVV+G D+IVP
Sbjct: 74  QSDVMIVSGTVTKKMAPLLRRLYDQMPEPKWVIAMGSCATAGGPYVKSYSVVKGVDQIVP 133

Query: 152 VDIYVPGCPPTAEALIYGILLLQKKIR 178
           VD+Y+PGCPP   ALIYGI  L++KIR
Sbjct: 134 VDVYIPGCPPNPAALIYGIHKLKEKIR 160


>gi|196249749|ref|ZP_03148445.1| NADH-quinone oxidoreductase, B subunit [Geobacillus sp. G11MC16]
 gi|196210625|gb|EDY05388.1| NADH-quinone oxidoreductase, B subunit [Geobacillus sp. G11MC16]
          Length = 170

 Score =  194 bits (493), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 92/147 (62%), Positives = 112/147 (76%)

Query: 32  EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPR 91
           E   +    T+++QL  WAR+ SL  +TFGLACCA+EMM      YDL+RFG   RASPR
Sbjct: 14  EEVKRNVFFTTLEQLKGWARSNSLWPLTFGLACCAIEMMAVGGAHYDLDRFGSFFRASPR 73

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
           QSDVMIV+GT+T KMA  LRR+YDQMPEP++VI+MGSCA  GG Y  SYSVV+G D+IVP
Sbjct: 74  QSDVMIVSGTVTKKMAPLLRRLYDQMPEPKWVIAMGSCATAGGPYVKSYSVVKGVDQIVP 133

Query: 152 VDIYVPGCPPTAEALIYGILLLQKKIR 178
           VD+Y+PGCPP   ALIYGI  L++KIR
Sbjct: 134 VDVYIPGCPPNPAALIYGIHKLKEKIR 160


>gi|221633754|ref|YP_002522980.1| NADH dehydrogenase i subunit B [Thermomicrobium roseum DSM 5159]
 gi|238065220|sp|B9L170|NUOB_THERP RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|221156029|gb|ACM05156.1| nadh dehydrogenase i, b subunit [Thermomicrobium roseum DSM 5159]
          Length = 185

 Score =  194 bits (493), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 90/157 (57%), Positives = 121/157 (77%), Gaps = 2/157 (1%)

Query: 29  ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDL-ERFGFAPR 87
           +S+  +H   + T+ D L +WAR  SL W+ FGLACCA+EM+ ++MPR+DL ERFG   R
Sbjct: 3   MSAAQSHPNIITTTADWLFSWARRSSLWWLQFGLACCAIEMISSAMPRFDLAERFGMLYR 62

Query: 88  ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCD 147
           ASPRQ+D+MIVAGT+T KMA  +R++YDQM +P++VISMGSCAN GG +  +Y+VV+G D
Sbjct: 63  ASPRQADLMIVAGTVTKKMAPVVRQLYDQMADPKWVISMGSCANVGGPFD-TYAVVQGVD 121

Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           +++PVDIYVPGCPP  EAL YG+L LQ +I R   +K
Sbjct: 122 QVIPVDIYVPGCPPVPEALYYGVLELQNRIIRYERLK 158


>gi|239828582|ref|YP_002951206.1| NADH dehydrogenase subunit B [Geobacillus sp. WCH70]
 gi|259514668|sp|C5D987|NUOB_GEOSW RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|239808875|gb|ACS25940.1| NADH-quinone oxidoreductase, B subunit [Geobacillus sp. WCH70]
          Length = 170

 Score =  194 bits (493), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 92/154 (59%), Positives = 114/154 (74%)

Query: 25  DFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF 84
           D     +E   +    T+++QL  WAR+ SL  +TFGLACCA+EMM      YDL+RFG 
Sbjct: 7   DVPEGDTEELKRNVFFTTLEQLKAWARSNSLWPLTFGLACCAIEMMGVGGAHYDLDRFGS 66

Query: 85  APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR 144
             RASPRQSDVMIV+GT+T KMA  +RR+YDQMPEP++VI+MGSCA  GG Y  SYSVV+
Sbjct: 67  FFRASPRQSDVMIVSGTVTKKMAPIIRRLYDQMPEPKWVIAMGSCATAGGPYVKSYSVVK 126

Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           G D+IVPVD+Y+PGCPP   ALIYGI  L++KIR
Sbjct: 127 GVDQIVPVDVYIPGCPPNPAALIYGINKLKEKIR 160


>gi|167463142|ref|ZP_02328231.1| NADH-quinone oxidoreductase, B subunit [Paenibacillus larvae subsp.
           larvae BRL-230010]
 gi|322383097|ref|ZP_08056924.1| hypothetical protein PL1_1946 [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321152759|gb|EFX45385.1| hypothetical protein PL1_1946 [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 172

 Score =  194 bits (493), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 90/158 (56%), Positives = 116/158 (73%), Gaps = 1/158 (0%)

Query: 21  KVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLE 80
           ++DA    +  E+  +    T++DQ+  WAR+ SL  +TFGLACCA+EMM      YDL+
Sbjct: 4   RLDAVLPEVQEEL-QRNVFTTTLDQVKAWARSSSLWPLTFGLACCAIEMMGTGAAHYDLD 62

Query: 81  RFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSY 140
           RFG   R SPRQ+DVMIVA T+T KMA  LRR+Y+QMPEP++VI+MGSCA  GG Y  SY
Sbjct: 63  RFGVIFRTSPRQADVMIVAETVTKKMAPLLRRLYEQMPEPKWVIAMGSCATAGGPYVKSY 122

Query: 141 SVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           +VV+G D++VPVD+Y+PGCPP   ALIYGI  LQ+KIR
Sbjct: 123 AVVKGVDQVVPVDVYIPGCPPNPAALIYGIHKLQEKIR 160


>gi|189346374|ref|YP_001942903.1| NADH dehydrogenase subunit B [Chlorobium limicola DSM 245]
 gi|238055283|sp|B3EI94|NUOB_CHLL2 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|189340521|gb|ACD89924.1| NADH-quinone oxidoreductase, B subunit [Chlorobium limicola DSM
           245]
          Length = 189

 Score =  193 bits (491), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 89/151 (58%), Positives = 116/151 (76%), Gaps = 1/151 (0%)

Query: 29  ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88
           + + IT    +VTSVD ++ WAR  SL  M FGLACCA+EMM  +   YDLERFG  PR+
Sbjct: 4   LDAGITKHNVVVTSVDNVLNWARLSSLWPMGFGLACCAIEMMATNASNYDLERFGIFPRS 63

Query: 89  SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCAN-GGGYYHYSYSVVRGCD 147
           SPRQSD+MIVAGT+T KMA  + R+Y+QMPEPRYV+SMGSC+N GG Y+ + Y V++G D
Sbjct: 64  SPRQSDLMIVAGTVTMKMAERVVRLYEQMPEPRYVLSMGSCSNCGGPYWEHGYHVLKGVD 123

Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           R++PVD+YVPGCPP  E+LI G++ +Q+ IR
Sbjct: 124 RVIPVDVYVPGCPPRPESLIGGLMKVQELIR 154


>gi|194336921|ref|YP_002018715.1| NADH-quinone oxidoreductase, B subunit [Pelodictyon
           phaeoclathratiforme BU-1]
 gi|238065188|sp|B4SBZ2|NUOB_PELPB RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|194309398|gb|ACF44098.1| NADH-quinone oxidoreductase, B subunit [Pelodictyon
           phaeoclathratiforme BU-1]
          Length = 189

 Score =  193 bits (491), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 88/151 (58%), Positives = 116/151 (76%), Gaps = 1/151 (0%)

Query: 29  ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88
           + + IT    L+TSVD ++ WAR  SL  M FGLACCA+EMM  +   YDLERFG  PR+
Sbjct: 4   LDAGITQHNVLITSVDNVLNWARLSSLWPMGFGLACCAIEMMATNASNYDLERFGIFPRS 63

Query: 89  SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCAN-GGGYYHYSYSVVRGCD 147
           SPRQSD+MIVAGT+T KMA  + R+Y+QMPEPRYV+SMGSC+N GG Y+ + Y V++G D
Sbjct: 64  SPRQSDLMIVAGTVTMKMAERVIRLYEQMPEPRYVLSMGSCSNCGGPYWEHGYHVLKGVD 123

Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           R++PVD++VPGCPP  E+LI G++ +Q+ IR
Sbjct: 124 RVIPVDVFVPGCPPRPESLIGGLMKVQELIR 154


>gi|307721750|ref|YP_003892890.1| NADH dehydrogenase subunit B [Sulfurimonas autotrophica DSM 16294]
 gi|306979843|gb|ADN09878.1| NADH dehydrogenase subunit B [Sulfurimonas autotrophica DSM 16294]
          Length = 169

 Score =  193 bits (490), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 89/147 (60%), Positives = 115/147 (78%), Gaps = 3/147 (2%)

Query: 40  VTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVA 99
           +TSVD++V W R+ SL  +T+GLACC +EMM +   RYD +RFG   RASPRQ+DVMIVA
Sbjct: 18  LTSVDKIVNWGRSNSLWALTYGLACCGIEMMASGASRYDFDRFGTIFRASPRQADVMIVA 77

Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGC 159
           GTLT K A  ++R+YDQM EPR+VISMGSCAN GG ++ +Y+ V+GCDRI+PVD+Y+PGC
Sbjct: 78  GTLTKKHAEFIKRLYDQMTEPRWVISMGSCANTGGMFN-TYATVQGCDRIIPVDLYLPGC 136

Query: 160 PPTAEALIYGILLLQKKIR--RVGNVK 184
            P  E L YG++LLQKKIR  + GN +
Sbjct: 137 APRPETLQYGVMLLQKKIRANKAGNAQ 163


>gi|119356790|ref|YP_911434.1| NADH-quinone oxidoreductase, B subunit [Chlorobium phaeobacteroides
           DSM 266]
 gi|238055286|sp|A1BF33|NUOB_CHLPD RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|119354139|gb|ABL65010.1| NADH dehydrogenase subunit B [Chlorobium phaeobacteroides DSM 266]
          Length = 189

 Score =  193 bits (490), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 88/151 (58%), Positives = 116/151 (76%), Gaps = 1/151 (0%)

Query: 29  ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88
           + + IT    L+TSVD ++ WAR  SL  M FGLACCA+EMM  +   YDLERFG  PR+
Sbjct: 4   LDAGITKHNVLITSVDNVLNWARLSSLWPMGFGLACCAIEMMATNASNYDLERFGIFPRS 63

Query: 89  SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCAN-GGGYYHYSYSVVRGCD 147
           SPRQSD+M+VAGT++ KMA  + R+Y+QMPEPRYV+SMGSC+N GG Y+ + Y V++G D
Sbjct: 64  SPRQSDLMLVAGTVSMKMAERVVRLYEQMPEPRYVLSMGSCSNCGGPYWEHGYHVLKGVD 123

Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           RI+PVD+YVPGCPP  E+LI G++ +Q+ IR
Sbjct: 124 RIIPVDVYVPGCPPRPESLIGGLMKVQELIR 154


>gi|317130743|ref|YP_004097025.1| NADH-quinone oxidoreductase subunit beta [Bacillus cellulosilyticus
           DSM 2522]
 gi|315475691|gb|ADU32294.1| NADH-quinone oxidoreductase, B subunit [Bacillus cellulosilyticus
           DSM 2522]
          Length = 175

 Score =  192 bits (489), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 94/152 (61%), Positives = 114/152 (75%), Gaps = 1/152 (0%)

Query: 28  RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
           RI  +I    F  T V+QL  W+RT SL  ++FGLACCA+EMM     RYD +RFG   R
Sbjct: 15  RILEDIKRNVFF-TKVEQLKAWSRTRSLWPLSFGLACCAIEMMGTGAARYDFDRFGVIFR 73

Query: 88  ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCD 147
           ASPR SDVMIVAGT+T+KMA  LR +YDQMPEP++VISMGSCA  GG Y  +YSVV G D
Sbjct: 74  ASPRHSDVMIVAGTVTSKMAPVLRTLYDQMPEPKWVISMGSCATCGGPYKEAYSVVNGVD 133

Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           ++VPVD+YVPGCPPT  AL+ G+ LL++KIRR
Sbjct: 134 KVVPVDVYVPGCPPTPPALLDGVDLLREKIRR 165


>gi|322819469|gb|EFZ26582.1| NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial
           precursor, putative [Trypanosoma cruzi]
          Length = 189

 Score =  192 bits (489), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 84/137 (61%), Positives = 110/137 (80%)

Query: 42  SVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGT 101
           ++  L  W  T SL  +TFGLACCAVEMM A   RYDL+RFG  PR +PRQ++++IV+GT
Sbjct: 42  TLHDLTEWCLTYSLWPLTFGLACCAVEMMHAYAARYDLDRFGIVPRPTPRQAEIIIVSGT 101

Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP 161
           +TNKMA  LR +Y QM  P++VISMGSCANGGGYYH+SY+V+RGC+R +PVD ++PGCPP
Sbjct: 102 VTNKMAPLLRNIYVQMVNPKWVISMGSCANGGGYYHFSYAVLRGCERAIPVDFWIPGCPP 161

Query: 162 TAEALIYGILLLQKKIR 178
           +AE+L++ +  LQKKIR
Sbjct: 162 SAESLVFCLHTLQKKIR 178


>gi|71410632|ref|XP_807601.1| NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial
           precursor [Trypanosoma cruzi strain CL
 gi|71652884|ref|XP_815090.1| NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial
           precursor [Trypanosoma cruzi strain CL
 gi|70871638|gb|EAN85750.1| NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial
           precursor, putative [Trypanosoma cruzi]
 gi|70880118|gb|EAN93239.1| NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial
           precursor, putative [Trypanosoma cruzi]
          Length = 202

 Score =  192 bits (489), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 84/137 (61%), Positives = 110/137 (80%)

Query: 42  SVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGT 101
           ++  L  W  T SL  +TFGLACCAVEMM A   RYDL+RFG  PR +PRQ++++IV+GT
Sbjct: 55  TLHDLTEWCLTYSLWPLTFGLACCAVEMMHAYAARYDLDRFGIVPRPTPRQAEIIIVSGT 114

Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP 161
           +TNKMA  LR +Y QM  P++VISMGSCANGGGYYH+SY+V+RGC+R +PVD ++PGCPP
Sbjct: 115 VTNKMAPLLRNIYVQMVNPKWVISMGSCANGGGYYHFSYAVLRGCERAIPVDFWIPGCPP 174

Query: 162 TAEALIYGILLLQKKIR 178
           +AE+L++ +  LQKKIR
Sbjct: 175 SAESLVFCLHTLQKKIR 191


>gi|291334203|gb|ADD93870.1| hypothetical protein [uncultured marine bacterium
           MedDCM-OCT-S08-C1340]
          Length = 118

 Score =  192 bits (489), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 91/116 (78%), Positives = 99/116 (85%)

Query: 69  MMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGS 128
           MM A   RYDL+RFG   R SPRQSDVMIVAGTL NKMA ALR+VYDQM +P++VISMGS
Sbjct: 1   MMHAGASRYDLDRFGMLFRPSPRQSDVMIVAGTLVNKMAPALRKVYDQMADPKWVISMGS 60

Query: 129 CANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           CANGGGYYHYSYSVVRGCDRIVPVD+YVPGCPPTAEAL+YGIL LQ KIR    +K
Sbjct: 61  CANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALLYGILQLQNKIRNKNRIK 116


>gi|312130053|ref|YP_003997393.1| NADH dehydrogenase subunit b [Leadbetterella byssophila DSM 17132]
 gi|311906599|gb|ADQ17040.1| NADH dehydrogenase subunit B [Leadbetterella byssophila DSM 17132]
          Length = 169

 Score =  192 bits (488), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 90/162 (55%), Positives = 121/162 (74%), Gaps = 4/162 (2%)

Query: 19  LEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78
           LE +++++   S E      ++T++D+L  WAR  SL  M FGLACCA+EMM      YD
Sbjct: 2   LESLESNYWEKSGE---GEVILTNLDELTNWARANSLWPMGFGLACCAIEMMATFASSYD 58

Query: 79  LERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCAN-GGGYYH 137
           LERFG  PR SPRQSD+MI++GT+T KMA  +RR+Y+QM EPRYVISMGSC+N GG Y+ 
Sbjct: 59  LERFGIFPRNSPRQSDLMIISGTVTFKMADRVRRLYEQMAEPRYVISMGSCSNCGGPYWE 118

Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           + Y V++G D+++PVD+YVPGCPP  EALI G++ LQ+KI+R
Sbjct: 119 HGYHVLKGVDKVIPVDVYVPGCPPRPEALIGGLIKLQEKIKR 160


>gi|319650861|ref|ZP_08004998.1| NADH dehydrogenase subunit B [Bacillus sp. 2_A_57_CT2]
 gi|317397459|gb|EFV78160.1| NADH dehydrogenase subunit B [Bacillus sp. 2_A_57_CT2]
          Length = 177

 Score =  192 bits (487), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 92/161 (57%), Positives = 116/161 (72%), Gaps = 3/161 (1%)

Query: 21  KVDADFSRISSEIT---HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRY 77
           ++D     IS E      +   + +++Q+  WAR+ SL  MTFGLACCA+EMM      Y
Sbjct: 7   EMDLKLDNISPEEMEELQRNVFMATLEQIKAWARSNSLWPMTFGLACCAIEMMGVGSSHY 66

Query: 78  DLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137
           DL+RFG   R SPRQSDVMIV+GT+T KMA  +RR+YDQMPEP++VI+MGSCA  GG Y 
Sbjct: 67  DLDRFGSFFRTSPRQSDVMIVSGTVTKKMAPIVRRLYDQMPEPKWVIAMGSCATAGGPYV 126

Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
            SYSVV+G D+IVPVD+Y+PGCPP   ALIYGI  L++KIR
Sbjct: 127 KSYSVVKGVDQIVPVDVYIPGCPPNPAALIYGINKLKEKIR 167


>gi|254847826|gb|ACT83735.1| NADH dehydrogenase ubiquinone Fe-S 7 protein-like protein
           [Piriformospora indica]
          Length = 120

 Score =  192 bits (487), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 89/104 (85%), Positives = 97/104 (93%)

Query: 76  RYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY 135
           RYD +R G   RASPRQSD+MIVAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGY
Sbjct: 6   RYDQDRLGIVFRASPRQSDIMIVAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGY 65

Query: 136 YHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           YHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG+L LQ+K+RR
Sbjct: 66  YHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGVLQLQRKMRR 109


>gi|124006095|ref|ZP_01690931.1| NADH-ubiquinone oxidoreductase 20 kda subunit [Microscilla marina
           ATCC 23134]
 gi|123988272|gb|EAY27925.1| NADH-ubiquinone oxidoreductase 20 kda subunit [Microscilla marina
           ATCC 23134]
          Length = 174

 Score =  191 bits (486), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 89/151 (58%), Positives = 111/151 (73%), Gaps = 1/151 (0%)

Query: 29  ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88
           +  +      ++T  + L+ WAR  SL  M FGLACCA+EMM      YDL+RFG  PRA
Sbjct: 4   LDQQFEQDNIILTKAEDLINWARLSSLWPMGFGLACCAIEMMSTFAAGYDLDRFGVFPRA 63

Query: 89  SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCAN-GGGYYHYSYSVVRGCD 147
           SPRQSDVMIVAGT+T KMA  ++R+Y+QM EPRYVISMGSC+N GG Y+ + Y VV+G D
Sbjct: 64  SPRQSDVMIVAGTVTFKMADRIKRLYEQMAEPRYVISMGSCSNCGGPYWEHGYHVVKGVD 123

Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           RI+PVD+YVPGCPP  EALI G + LQ+K+R
Sbjct: 124 RIIPVDVYVPGCPPRPEALIGGFMKLQEKVR 154


>gi|212640517|ref|YP_002317037.1| NADH dehydrogenase subunit B [Anoxybacillus flavithermus WK1]
 gi|238065054|sp|B7GMF0|NUOB_ANOFW RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|212561997|gb|ACJ35052.1| NADH dehydrogenase subunit B [Anoxybacillus flavithermus WK1]
          Length = 177

 Score =  191 bits (485), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 92/161 (57%), Positives = 116/161 (72%), Gaps = 3/161 (1%)

Query: 21  KVDADFSRISS---EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRY 77
           K+D     +S    E   +   +T+++QL  WAR+ SL  +TFGLACCA+EMM      Y
Sbjct: 7   KMDVKLLNVSDQEMEEMRRNVFLTTLEQLKAWARSNSLWPLTFGLACCAIEMMGVGSSHY 66

Query: 78  DLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137
           DL+RFG   R SPRQSDVMIV+GT+T KMA  +RR+YDQMPEP++VI+MGSCA  GG Y 
Sbjct: 67  DLDRFGSFFRTSPRQSDVMIVSGTVTKKMAPIVRRLYDQMPEPKWVIAMGSCATAGGPYV 126

Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
            SY VV+G D+IVPVD+Y+PGCPP   ALIYGI  L++KIR
Sbjct: 127 KSYCVVKGVDQIVPVDVYIPGCPPNPAALIYGINKLKEKIR 167


>gi|290988470|ref|XP_002676938.1| predicted protein [Naegleria gruberi]
 gi|284090543|gb|EFC44194.1| predicted protein [Naegleria gruberi]
          Length = 131

 Score =  191 bits (485), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 89/125 (71%), Positives = 100/125 (80%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           FL   +  L  WAR GS+  +TFGLACCAVEMM AS  RYDLER G   R +PRQ+D MI
Sbjct: 6   FLKAPLHDLFAWARVGSMWPVTFGLACCAVEMMHASASRYDLERKGIFFRPTPRQADAMI 65

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           +AGTLTNKMA ALR+V+DQM EPRY ISMGSCANGGGYYH+SY VVRG D+IVPVD+YVP
Sbjct: 66  IAGTLTNKMAPALRKVWDQMAEPRYSISMGSCANGGGYYHFSYHVVRGADQIVPVDVYVP 125

Query: 158 GCPPT 162
           GCPP 
Sbjct: 126 GCPPN 130


>gi|152990038|ref|YP_001355760.1| NADH dehydrogenase subunit B [Nitratiruptor sp. SB155-2]
 gi|238065184|sp|A6Q1P4|NUOB_NITSB RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|151421899|dbj|BAF69403.1| NADH-quinone oxidoreductase, chain B [Nitratiruptor sp. SB155-2]
          Length = 169

 Score =  191 bits (485), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 87/140 (62%), Positives = 111/140 (79%), Gaps = 1/140 (0%)

Query: 40  VTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVA 99
           +T+VD+LV W RT SL  +T+GLACCA+EMM +   RYD +RFG   RASPRQSDVMIVA
Sbjct: 18  LTTVDKLVNWGRTNSLWVLTYGLACCAIEMMASGASRYDFDRFGVIFRASPRQSDVMIVA 77

Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGC 159
           GTLT K A  +RR+YDQM EP++VISMGSCAN GG ++ +Y+ V+G DR++PVDIY+PGC
Sbjct: 78  GTLTKKHAEFIRRLYDQMAEPKWVISMGSCANTGGMFN-TYATVQGVDRVIPVDIYLPGC 136

Query: 160 PPTAEALIYGILLLQKKIRR 179
            P  E L Y ++LLQKK+R+
Sbjct: 137 APRPETLQYAVMLLQKKLRK 156


>gi|193216261|ref|YP_001997460.1| NADH dehydrogenase subunit B [Chloroherpeton thalassium ATCC 35110]
 gi|238065031|sp|B3QY47|NUOB2_CHLT3 RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName:
           Full=NADH dehydrogenase I subunit B 2; AltName:
           Full=NDH-1 subunit B 2
 gi|193089738|gb|ACF15013.1| NADH-quinone oxidoreductase, B subunit [Chloroherpeton thalassium
           ATCC 35110]
          Length = 195

 Score =  191 bits (485), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 87/152 (57%), Positives = 114/152 (75%), Gaps = 1/152 (0%)

Query: 29  ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88
           +  +    G ++T+ + ++ WAR  SL  M FGLACCA+EMM  +   YDLERFG  PR+
Sbjct: 4   LDQKFDKGGVVITAAENVLNWARLSSLWPMGFGLACCAIEMMATNASNYDLERFGIFPRS 63

Query: 89  SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCAN-GGGYYHYSYSVVRGCD 147
           SPRQSD+MIVAGT+T KMA  + R+Y+QMPEPRYV+SMGSC+N GG Y+ + Y VV+G D
Sbjct: 64  SPRQSDLMIVAGTVTFKMAERVVRLYEQMPEPRYVLSMGSCSNCGGPYWEHGYHVVKGVD 123

Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           RI+PVD+YVPGCPP  EALI G++ +Q+ IR 
Sbjct: 124 RIIPVDVYVPGCPPRPEALIGGLMKVQELIRE 155


>gi|269836326|ref|YP_003318554.1| NADH-quinone oxidoreductase, B subunit [Sphaerobacter thermophilus
           DSM 20745]
 gi|269785589|gb|ACZ37732.1| NADH-quinone oxidoreductase, B subunit [Sphaerobacter thermophilus
           DSM 20745]
          Length = 185

 Score =  191 bits (484), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 86/144 (59%), Positives = 114/144 (79%), Gaps = 2/144 (1%)

Query: 35  HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDL-ERFGFAPRASPRQS 93
            +  L T+VD +  WAR  SL W+ FGLACCA+EM+ A+MPR+DL ERFG   RASPRQ+
Sbjct: 9   ERNILTTTVDTVFNWARRSSLWWLQFGLACCAIEMISAAMPRFDLAERFGMLYRASPRQA 68

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD 153
           D+MIVAGT+T KMA  +R++YDQM +P++VISMGSCAN GG +  +Y+VV+G D+++PVD
Sbjct: 69  DLMIVAGTVTKKMAPVVRQLYDQMADPKWVISMGSCANVGGPFD-TYAVVQGVDQVIPVD 127

Query: 154 IYVPGCPPTAEALIYGILLLQKKI 177
           +YVPGCPP  EAL YG+L LQ ++
Sbjct: 128 VYVPGCPPLPEALYYGVLELQNRV 151


>gi|89095634|ref|ZP_01168528.1| NADH dehydrogenase subunit B [Bacillus sp. NRRL B-14911]
 gi|89089380|gb|EAR68487.1| NADH dehydrogenase subunit B [Bacillus sp. NRRL B-14911]
          Length = 177

 Score =  191 bits (484), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 91/161 (56%), Positives = 116/161 (72%), Gaps = 3/161 (1%)

Query: 21  KVDADFSRISSEITH---KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRY 77
           ++D     I+ E      +   + +++Q+  WAR+ SL  MTFGLACCA+EMM      Y
Sbjct: 7   QMDLKLENITPEEMQELQRNVFMATLEQIKAWARSNSLWPMTFGLACCAIEMMGVGSSHY 66

Query: 78  DLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137
           DL+RFG   R SPRQSDVMIV+GT+T KMA  +RR+YDQMPEP++VI+MGSCA  GG Y 
Sbjct: 67  DLDRFGSFFRTSPRQSDVMIVSGTVTKKMAPIVRRLYDQMPEPKWVIAMGSCATAGGPYV 126

Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
            SYSVV+G D+IVPVD+Y+PGCPP   ALIYGI  L++KIR
Sbjct: 127 KSYSVVKGVDQIVPVDVYIPGCPPNPAALIYGINKLKEKIR 167


>gi|251799771|ref|YP_003014502.1| NADH dehydrogenase subunit B [Paenibacillus sp. JDR-2]
 gi|247547397|gb|ACT04416.1| NADH-quinone oxidoreductase, B subunit [Paenibacillus sp. JDR-2]
          Length = 172

 Score =  191 bits (484), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 88/144 (61%), Positives = 109/144 (75%)

Query: 35  HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSD 94
            +   + +++QL  WAR+ SL  +TFGLACCA+EMM      YDL+RFG   R SPRQSD
Sbjct: 17  ERNVFMGTLEQLKAWARSNSLWPLTFGLACCAIEMMGTGASHYDLDRFGVMFRTSPRQSD 76

Query: 95  VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154
           VMIVAGT+T KM   LRR+YDQMPEP++VI+MGSCA  GG Y  SY+V++G D+IVPVD+
Sbjct: 77  VMIVAGTVTKKMGPLLRRLYDQMPEPKWVIAMGSCATAGGPYIKSYAVMKGVDQIVPVDV 136

Query: 155 YVPGCPPTAEALIYGILLLQKKIR 178
           Y+PGCPP   ALIYGI  LQ+KIR
Sbjct: 137 YIPGCPPNPAALIYGINKLQEKIR 160


>gi|152977486|ref|YP_001377003.1| NADH dehydrogenase subunit B [Bacillus cereus subsp. cytotoxis NVH
           391-98]
 gi|238065062|sp|A7GV50|NUOB_BACCN RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|152026238|gb|ABS24008.1| NADH-quinone oxidoreductase, B subunit [Bacillus cytotoxicus NVH
           391-98]
          Length = 172

 Score =  191 bits (484), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 88/144 (61%), Positives = 110/144 (76%)

Query: 35  HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSD 94
            +    T+++Q+  WAR+ SL  MTFGLACCA+EMM      YDL+RFG   R SPRQSD
Sbjct: 17  ERNIFFTTLEQIKGWARSNSLWPMTFGLACCAIEMMGVGSSHYDLDRFGSFFRTSPRQSD 76

Query: 95  VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154
           VMIV+GT+T KMA  +RR+YDQMPEP++VI+MGSCA  GG Y  SY+VV+G D+IVPVD+
Sbjct: 77  VMIVSGTVTKKMAPIVRRLYDQMPEPKWVIAMGSCATAGGPYVNSYAVVKGVDQIVPVDV 136

Query: 155 YVPGCPPTAEALIYGILLLQKKIR 178
           Y+PGCPP   ALIYGI  L++KIR
Sbjct: 137 YIPGCPPNPAALIYGINKLKEKIR 160


>gi|49188135|ref|YP_031388.1| NADH dehydrogenase subunit B [Bacillus anthracis str. Sterne]
 gi|49481270|ref|YP_039290.1| NADH dehydrogenase subunit B [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|52140262|ref|YP_086568.1| NADH dehydrogenase subunit B [Bacillus cereus E33L]
 gi|65317275|ref|ZP_00390234.1| COG0377: NADH:ubiquinone oxidoreductase 20 kD subunit and related
           Fe-S oxidoreductases [Bacillus anthracis str. A2012]
 gi|75762936|ref|ZP_00742740.1| NADH-quinone oxidoreductase chain B [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|118480339|ref|YP_897490.1| NADH dehydrogenase subunit B [Bacillus thuringiensis str. Al Hakam]
 gi|81394192|sp|Q6HAY6|NUOB_BACHK RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|81685364|sp|Q630U9|NUOB_BACCZ RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|238065057|sp|A0RL90|NUOB_BACAH RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|49182062|gb|AAT57438.1| NADH dehydrogenase I, B subunit [Bacillus anthracis str. Sterne]
 gi|49332826|gb|AAT63472.1| NADH dehydrogenase I, subunit B (NADH-quinone oxidoreductase, chain
           B) [Bacillus thuringiensis serovar konkukian str. 97-27]
 gi|51973731|gb|AAU15281.1| NADH dehydrogenase I, subunit B (NADH-quinone oxidoreductase, chain
           B) [Bacillus cereus E33L]
 gi|74489578|gb|EAO52990.1| NADH-quinone oxidoreductase chain B [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|118419564|gb|ABK87983.1| NADH dehydrogenase subunit B [Bacillus thuringiensis str. Al Hakam]
          Length = 179

 Score =  190 bits (483), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 88/144 (61%), Positives = 110/144 (76%)

Query: 35  HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSD 94
            +    ++++QL  WAR+ SL  MTFGLACCA+EMM      YDL+RFG   R SPRQSD
Sbjct: 24  ERNIFFSTLEQLKGWARSNSLWPMTFGLACCAIEMMGVGSSHYDLDRFGSFFRTSPRQSD 83

Query: 95  VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154
           VMIV+GT+T KMA  +RR+YDQMPEP++VI+MGSCA  GG Y  SY+VV+G D+IVPVD+
Sbjct: 84  VMIVSGTVTKKMAPIVRRLYDQMPEPKWVIAMGSCATAGGPYVNSYAVVKGVDQIVPVDV 143

Query: 155 YVPGCPPTAEALIYGILLLQKKIR 178
           Y+PGCPP   ALIYGI  L++KIR
Sbjct: 144 YIPGCPPNPAALIYGINKLKEKIR 167


>gi|226489136|emb|CAX74917.1| NADH dehydrogenase (ubiquinone) Fe-S protein 7 [Schistosoma
           japonicum]
          Length = 176

 Score =  190 bits (483), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 84/120 (70%), Positives = 103/120 (85%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           F++T +D L  WAR  S+  +TFGLACCAVEMM  + PRYD++R+G   RASPRQ+D+MI
Sbjct: 56  FVLTRLDDLANWARKNSIYPLTFGLACCAVEMMHIAGPRYDMDRYGVVFRASPRQADLMI 115

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           V+GT+TNKMA ALRR+YDQM  P++VISMGSCANGGGYYHYSYSV+RGCDR++PVDIYVP
Sbjct: 116 VSGTVTNKMAPALRRIYDQMTHPKWVISMGSCANGGGYYHYSYSVLRGCDRVIPVDIYVP 175


>gi|30023332|ref|NP_834963.1| NADH dehydrogenase subunit B [Bacillus cereus ATCC 14579]
 gi|30265322|ref|NP_847699.1| NADH dehydrogenase subunit B [Bacillus anthracis str. Ames]
 gi|42784469|ref|NP_981716.1| NADH dehydrogenase subunit B [Bacillus cereus ATCC 10987]
 gi|47530861|ref|YP_022210.1| NADH dehydrogenase subunit B [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|165869972|ref|ZP_02214629.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus anthracis str.
           A0488]
 gi|167636380|ref|ZP_02394680.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus anthracis str.
           A0442]
 gi|167641714|ref|ZP_02399958.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus anthracis str.
           A0193]
 gi|170689329|ref|ZP_02880523.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus anthracis str.
           A0465]
 gi|170708828|ref|ZP_02899263.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus anthracis str.
           A0389]
 gi|177654059|ref|ZP_02936069.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus anthracis str.
           A0174]
 gi|190567657|ref|ZP_03020569.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus anthracis
           Tsiankovskii-I]
 gi|196036336|ref|ZP_03103734.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus cereus W]
 gi|196039410|ref|ZP_03106715.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus cereus
           NVH0597-99]
 gi|196045583|ref|ZP_03112813.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus cereus
           03BB108]
 gi|206976881|ref|ZP_03237783.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus cereus
           H3081.97]
 gi|217962788|ref|YP_002341364.1| NADH dehydrogenase subunit B [Bacillus cereus AH187]
 gi|218232741|ref|YP_002370074.1| NADH dehydrogenase subunit B [Bacillus cereus B4264]
 gi|218906476|ref|YP_002454310.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus cereus AH820]
 gi|222098770|ref|YP_002532828.1| NADH dehydrogenase subunit b [Bacillus cereus Q1]
 gi|225867276|ref|YP_002752654.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus cereus
           03BB102]
 gi|227818062|ref|YP_002818071.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus anthracis str.
           CDC 684]
 gi|229601924|ref|YP_002869514.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus anthracis str.
           A0248]
 gi|254686278|ref|ZP_05150137.1| NADH dehydrogenase subunit B [Bacillus anthracis str. CNEVA-9066]
 gi|254724274|ref|ZP_05186058.1| NADH dehydrogenase subunit B [Bacillus anthracis str. A1055]
 gi|254735227|ref|ZP_05192936.1| NADH dehydrogenase subunit B [Bacillus anthracis str. Western North
           America USA6153]
 gi|254744431|ref|ZP_05202111.1| NADH dehydrogenase subunit B [Bacillus anthracis str. Kruger B]
 gi|254755735|ref|ZP_05207768.1| NADH dehydrogenase subunit B [Bacillus anthracis str. Vollum]
 gi|254759532|ref|ZP_05211557.1| NADH dehydrogenase subunit B [Bacillus anthracis str. Australia 94]
 gi|296505727|ref|YP_003667427.1| NADH dehydrogenase subunit B [Bacillus thuringiensis BMB171]
 gi|300117809|ref|ZP_07055576.1| NADH dehydrogenase subunit B [Bacillus cereus SJ1]
 gi|301056766|ref|YP_003794977.1| NADH dehydrogenase subunit beta [Bacillus anthracis CI]
 gi|81408415|sp|Q72XF4|NUOB_BACC1 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|81433046|sp|Q814W7|NUOB_BACCR RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|81580962|sp|Q81K01|NUOB_BACAN RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|238065058|sp|B7JGM4|NUOB_BACC0 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|238065060|sp|B7HFJ5|NUOB_BACC4 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|238065061|sp|B7HY57|NUOB_BACC7 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|238065063|sp|B9IRT1|NUOB_BACCQ RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|254767787|sp|C3P1E8|NUOB_BACAA RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|254767788|sp|C3LFH3|NUOB_BACAC RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|254767789|sp|C1F0M2|NUOB_BACC3 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|29898893|gb|AAP12164.1| NADH-quinone oxidoreductase chain B [Bacillus cereus ATCC 14579]
 gi|30260000|gb|AAP29185.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus anthracis str.
           Ames]
 gi|42740401|gb|AAS44324.1| NADH dehydrogenase I, B subunit [Bacillus cereus ATCC 10987]
 gi|47506009|gb|AAT34685.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus anthracis str.
           'Ames Ancestor']
 gi|164714295|gb|EDR19815.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus anthracis str.
           A0488]
 gi|167510339|gb|EDR85741.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus anthracis str.
           A0193]
 gi|167528214|gb|EDR90996.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus anthracis str.
           A0442]
 gi|170126228|gb|EDS95120.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus anthracis str.
           A0389]
 gi|170666697|gb|EDT17466.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus anthracis str.
           A0465]
 gi|172080942|gb|EDT66021.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus anthracis str.
           A0174]
 gi|190561073|gb|EDV15046.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus anthracis
           Tsiankovskii-I]
 gi|195991128|gb|EDX55098.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus cereus W]
 gi|196023414|gb|EDX62091.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus cereus
           03BB108]
 gi|196029570|gb|EDX68172.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus cereus
           NVH0597-99]
 gi|206744847|gb|EDZ56252.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus cereus
           H3081.97]
 gi|217066695|gb|ACJ80945.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus cereus AH187]
 gi|218160698|gb|ACK60690.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus cereus B4264]
 gi|218535886|gb|ACK88284.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus cereus AH820]
 gi|221242829|gb|ACM15539.1| NADH dehydrogenase I, subunit B (NADH-quinone oxidoreductase, chain
           B) [Bacillus cereus Q1]
 gi|225791042|gb|ACO31259.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus cereus
           03BB102]
 gi|227004083|gb|ACP13826.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus anthracis str.
           CDC 684]
 gi|229266332|gb|ACQ47969.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus anthracis str.
           A0248]
 gi|296326779|gb|ADH09707.1| NADH dehydrogenase subunit B [Bacillus thuringiensis BMB171]
 gi|298724673|gb|EFI65348.1| NADH dehydrogenase subunit B [Bacillus cereus SJ1]
 gi|300378935|gb|ADK07839.1| NADH dehydrogenase beta subunit [Bacillus cereus biovar anthracis
           str. CI]
 gi|324329247|gb|ADY24507.1| NADH dehydrogenase subunit B [Bacillus thuringiensis serovar
           finitimus YBT-020]
 gi|326943097|gb|AEA18993.1| NADH dehydrogenase subunit B [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 172

 Score =  190 bits (482), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 88/144 (61%), Positives = 110/144 (76%)

Query: 35  HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSD 94
            +    ++++QL  WAR+ SL  MTFGLACCA+EMM      YDL+RFG   R SPRQSD
Sbjct: 17  ERNIFFSTLEQLKGWARSNSLWPMTFGLACCAIEMMGVGSSHYDLDRFGSFFRTSPRQSD 76

Query: 95  VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154
           VMIV+GT+T KMA  +RR+YDQMPEP++VI+MGSCA  GG Y  SY+VV+G D+IVPVD+
Sbjct: 77  VMIVSGTVTKKMAPIVRRLYDQMPEPKWVIAMGSCATAGGPYVNSYAVVKGVDQIVPVDV 136

Query: 155 YVPGCPPTAEALIYGILLLQKKIR 178
           Y+PGCPP   ALIYGI  L++KIR
Sbjct: 137 YIPGCPPNPAALIYGINKLKEKIR 160


>gi|218900425|ref|YP_002448836.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus cereus G9842]
 gi|238065059|sp|B7IQV2|NUOB_BACC2 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|218541670|gb|ACK94064.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus cereus G9842]
          Length = 172

 Score =  190 bits (482), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 88/144 (61%), Positives = 110/144 (76%)

Query: 35  HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSD 94
            +    ++++QL  WAR+ SL  MTFGLACCA+EMM      YDL+RFG   R SPRQSD
Sbjct: 17  ERNIFFSTLEQLKGWARSNSLWPMTFGLACCAIEMMGVGSSHYDLDRFGSFFRTSPRQSD 76

Query: 95  VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154
           VMIV+GT+T KMA  +RR+YDQMPEP++VI+MGSCA  GG Y  SY+VV+G D+IVPVD+
Sbjct: 77  VMIVSGTVTKKMAPIVRRLYDQMPEPKWVIAMGSCATAGGPYVNSYAVVKGVDQIVPVDV 136

Query: 155 YVPGCPPTAEALIYGILLLQKKIR 178
           Y+PGCPP   ALIYGI  L++KIR
Sbjct: 137 YIPGCPPNPAALIYGINKLKEKIR 160


>gi|47569794|ref|ZP_00240465.1| NADH dehydrogenase I, B subunit [Bacillus cereus G9241]
 gi|47553536|gb|EAL11916.1| NADH dehydrogenase I, B subunit [Bacillus cereus G9241]
          Length = 172

 Score =  190 bits (482), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 88/144 (61%), Positives = 110/144 (76%)

Query: 35  HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSD 94
            +    ++++QL  WAR+ SL  MTFGLACCA+EMM      YDL+RFG   R SPRQSD
Sbjct: 17  ERNIFFSTLEQLKGWARSNSLWPMTFGLACCAIEMMGVGSSHYDLDRFGSFFRTSPRQSD 76

Query: 95  VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154
           VMIV+GT+T KMA  +RR+YDQMPEP++VI+MGSCA  GG Y  SY+VV+G D+IVPVD+
Sbjct: 77  VMIVSGTVTKKMAPIVRRLYDQMPEPKWVIAMGSCATAGGPYINSYAVVKGVDQIVPVDV 136

Query: 155 YVPGCPPTAEALIYGILLLQKKIR 178
           Y+PGCPP   ALIYGI  L++KIR
Sbjct: 137 YIPGCPPNPAALIYGINKLKEKIR 160


>gi|284038505|ref|YP_003388435.1| NADH-quinone oxidoreductase subunit beta [Spirosoma linguale DSM
           74]
 gi|283817798|gb|ADB39636.1| NADH-quinone oxidoreductase, B subunit [Spirosoma linguale DSM 74]
          Length = 176

 Score =  190 bits (482), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 88/136 (64%), Positives = 108/136 (79%), Gaps = 1/136 (0%)

Query: 44  DQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLT 103
           + L+ W+R  S+  M+FGLACCA+EMMQA    YDLERFG  PR SPRQSD+MIV+GT+T
Sbjct: 33  EDLLNWSREKSMWPMSFGLACCAIEMMQAFAASYDLERFGIFPRPSPRQSDIMIVSGTVT 92

Query: 104 NKMASALRRVYDQMPEPRYVISMGSCAN-GGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162
            KMA  +RR+Y+QM EPRYVISMGSC+N GG Y+ + Y VV+G DRI+PVD+YVPGCPP 
Sbjct: 93  FKMADRIRRLYEQMAEPRYVISMGSCSNCGGPYWQHGYHVVKGVDRIIPVDVYVPGCPPR 152

Query: 163 AEALIYGILLLQKKIR 178
            EALI G + LQ+KIR
Sbjct: 153 PEALIDGFIKLQEKIR 168


>gi|163942987|ref|YP_001647871.1| NADH dehydrogenase subunit B [Bacillus weihenstephanensis KBAB4]
 gi|238055233|sp|A9VS97|NUOB_BACWK RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|163865184|gb|ABY46243.1| NADH-quinone oxidoreductase, B subunit [Bacillus weihenstephanensis
           KBAB4]
          Length = 172

 Score =  190 bits (482), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 88/144 (61%), Positives = 110/144 (76%)

Query: 35  HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSD 94
            +    ++++QL  WAR+ SL  MTFGLACCA+EMM      YDL+RFG   R SPRQSD
Sbjct: 17  ERNIFFSTLEQLKGWARSNSLWPMTFGLACCAIEMMGVGSSHYDLDRFGSFFRTSPRQSD 76

Query: 95  VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154
           VMIV+GT+T KMA  +RR+YDQMPEP++VI+MGSCA  GG Y  SY+VV+G D+IVPVD+
Sbjct: 77  VMIVSGTVTKKMAPIVRRLYDQMPEPKWVIAMGSCATAGGPYVNSYAVVKGVDQIVPVDV 136

Query: 155 YVPGCPPTAEALIYGILLLQKKIR 178
           Y+PGCPP   ALIYGI  L++KIR
Sbjct: 137 YIPGCPPNPAALIYGINKLKEKIR 160


>gi|50555305|ref|XP_505061.1| YALI0F06050p [Yarrowia lipolytica]
 gi|49650931|emb|CAG77868.1| YALI0F06050p [Yarrowia lipolytica]
          Length = 216

 Score =  189 bits (481), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 91/143 (63%), Positives = 106/143 (74%), Gaps = 2/143 (1%)

Query: 12  SGQSSCSLEKVDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVEM 69
           +G    S   +  DF   S +  +    + +T++D +  WAR GS   +TFGLACCAVEM
Sbjct: 31  AGTPRVSSSSMPTDFPLPSQQKPNSAVDYTLTTLDAVANWARQGSFWPVTFGLACCAVEM 90

Query: 70  MQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSC 129
           M  S PRYD +R G   RASPRQSD+MIVAGTLTNKMA  LR+VYDQMPEPR+VISMGSC
Sbjct: 91  MHVSAPRYDQDRLGIIFRASPRQSDIMIVAGTLTNKMAPVLRQVYDQMPEPRWVISMGSC 150

Query: 130 ANGGGYYHYSYSVVRGCDRIVPV 152
           ANGGGYYH+SYSVVRGCDRIVPV
Sbjct: 151 ANGGGYYHFSYSVVRGCDRIVPV 173


>gi|34556898|ref|NP_906713.1| NADH dehydrogenase subunit B [Wolinella succinogenes DSM 1740]
 gi|81653582|sp|Q7MA50|NUOB_WOLSU RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|34482613|emb|CAE09613.1| NADH DEHYDROGENASE I CHAIN B [Wolinella succinogenes]
          Length = 169

 Score =  189 bits (481), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 86/141 (60%), Positives = 112/141 (79%), Gaps = 1/141 (0%)

Query: 39  LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIV 98
           ++T+VD LV W R+ SL  +T+GLACCA+EMM +   RYD +RFG   RASPRQ+DVMIV
Sbjct: 17  VLTTVDHLVNWGRSNSLWALTYGLACCAIEMMASGAGRYDFDRFGTIFRASPRQADVMIV 76

Query: 99  AGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPG 158
           AGTLT K A  +RR+YDQM EP++VISMGSCAN GG ++ +Y+ V+GCDRI+PVD+Y+PG
Sbjct: 77  AGTLTKKHAEFIRRLYDQMSEPKWVISMGSCANTGGMFN-TYATVQGCDRIIPVDVYLPG 135

Query: 159 CPPTAEALIYGILLLQKKIRR 179
           C P  E L Y +++LQ+KIRR
Sbjct: 136 CAPRPETLQYAVMVLQQKIRR 156


>gi|304407748|ref|ZP_07389399.1| NADH-quinone oxidoreductase, B subunit [Paenibacillus
           curdlanolyticus YK9]
 gi|304343231|gb|EFM09074.1| NADH-quinone oxidoreductase, B subunit [Paenibacillus
           curdlanolyticus YK9]
          Length = 170

 Score =  189 bits (481), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 90/147 (61%), Positives = 112/147 (76%), Gaps = 1/147 (0%)

Query: 32  EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPR 91
           E+    FL T ++Q+  WAR+ SL  +TFGLACCA+EMM      YDL+RFG   R SPR
Sbjct: 15  ELERNVFLGT-LEQVKAWARSNSLWPLTFGLACCAIEMMGTGASHYDLDRFGVMFRTSPR 73

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
           Q+DVMIVAGT+T KM   LRR+YDQMPEP++VI+MGSCA  GG Y  SY+V++G D+IVP
Sbjct: 74  QADVMIVAGTVTKKMGPLLRRLYDQMPEPKWVIAMGSCATAGGPYVKSYAVIKGVDQIVP 133

Query: 152 VDIYVPGCPPTAEALIYGILLLQKKIR 178
           VD+Y+PGCPP+  ALIYGI  LQ+KIR
Sbjct: 134 VDVYIPGCPPSPAALIYGINKLQEKIR 160


>gi|78778022|ref|YP_394337.1| NADH dehydrogenase subunit B [Sulfurimonas denitrificans DSM 1251]
 gi|123549715|sp|Q30PH9|NUOB_SULDN RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|78498562|gb|ABB45102.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit [Sulfurimonas
           denitrificans DSM 1251]
          Length = 169

 Score =  189 bits (481), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 86/139 (61%), Positives = 110/139 (79%), Gaps = 1/139 (0%)

Query: 40  VTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVA 99
           +TS+D++V W R+ SL  MT+GLACC +EMM +   RYD +RFG   RASPRQSDVMIVA
Sbjct: 18  LTSIDKIVNWGRSNSLWAMTYGLACCGIEMMASGASRYDFDRFGTIFRASPRQSDVMIVA 77

Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGC 159
           GTLT K A  ++R+YDQM EP++VISMGSCAN GG ++ +Y+ V+G DRI+PVD+Y+PGC
Sbjct: 78  GTLTKKHAEFIKRLYDQMTEPKWVISMGSCANTGGMFN-TYATVQGVDRIIPVDLYLPGC 136

Query: 160 PPTAEALIYGILLLQKKIR 178
            P  E L YG++LLQKKIR
Sbjct: 137 APRPETLQYGVMLLQKKIR 155


>gi|227536077|ref|ZP_03966126.1| NADH:ubiquinone oxidoreductase [Sphingobacterium spiritivorum ATCC
           33300]
 gi|227243974|gb|EEI93989.1| NADH:ubiquinone oxidoreductase [Sphingobacterium spiritivorum ATCC
           33300]
          Length = 167

 Score =  189 bits (481), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 87/152 (57%), Positives = 114/152 (75%), Gaps = 1/152 (0%)

Query: 29  ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88
           I +++ + G +V  +D L+ WAR  S+  ++FG+ACCA+EMM A    YDL+R G  PR 
Sbjct: 3   IENQLQNNGVVVAKLDDLLNWARLSSMWPVSFGIACCAIEMMGAMASTYDLDRLGVFPRP 62

Query: 89  SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCAN-GGGYYHYSYSVVRGCD 147
           SPRQSDVMI+AGT+T KMA  +R++Y+QMPEP+YVISMGSC+N GG Y+ + Y VV+G D
Sbjct: 63  SPRQSDVMIIAGTVTFKMADRIRKLYEQMPEPKYVISMGSCSNCGGPYWQHGYHVVKGVD 122

Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           RI+PVD+YV GCPP  EALI   L LQKKI +
Sbjct: 123 RIIPVDVYVQGCPPRPEALIGAFLELQKKIEK 154


>gi|300772047|ref|ZP_07081917.1| NADH dehydrogenase I [Sphingobacterium spiritivorum ATCC 33861]
 gi|300760350|gb|EFK57176.1| NADH dehydrogenase I [Sphingobacterium spiritivorum ATCC 33861]
          Length = 167

 Score =  189 bits (480), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 87/152 (57%), Positives = 114/152 (75%), Gaps = 1/152 (0%)

Query: 29  ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88
           I +++ + G +V  +D L+ WAR  S+  ++FG+ACCA+EMM A    YDL+R G  PR 
Sbjct: 3   IENQLQNNGVVVAKLDDLLNWARLSSMWPVSFGIACCAIEMMGAMASTYDLDRLGVFPRP 62

Query: 89  SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCAN-GGGYYHYSYSVVRGCD 147
           SPRQSDVMI+AGT+T KMA  +R++Y+QMPEP+YVISMGSC+N GG Y+ + Y VV+G D
Sbjct: 63  SPRQSDVMIIAGTVTFKMADRIRKLYEQMPEPKYVISMGSCSNCGGPYWQHGYHVVKGVD 122

Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           RI+PVD+YV GCPP  EALI   L LQKKI +
Sbjct: 123 RIIPVDVYVQGCPPRPEALIGAFLELQKKIEK 154


>gi|78186619|ref|YP_374662.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit [Chlorobium
           luteolum DSM 273]
 gi|123583245|sp|Q3B4W2|NUOB_PELLD RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|78166521|gb|ABB23619.1| NADH dehydrogenase subunit B [Chlorobium luteolum DSM 273]
          Length = 189

 Score =  189 bits (480), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 91/158 (57%), Positives = 116/158 (73%), Gaps = 8/158 (5%)

Query: 22  VDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLER 81
           +DA FSR          LV  VD ++ WAR  SL  M FGLACCA+EMM  +   YDLER
Sbjct: 4   LDAGFSR-------DNVLVAPVDAVLNWARLSSLWPMGFGLACCAIEMMATNASNYDLER 56

Query: 82  FGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCAN-GGGYYHYSY 140
           FG  PR+SPRQSD+MIVAGT++ KMA  + R+Y+QMPEPRYV+SMGSC+N GG Y+ + Y
Sbjct: 57  FGIFPRSSPRQSDLMIVAGTVSMKMAERVVRLYEQMPEPRYVLSMGSCSNCGGPYWEHGY 116

Query: 141 SVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
            V++G DR++PVD+YVPGCPP  EALI G++ +Q+ IR
Sbjct: 117 HVLKGVDRVIPVDVYVPGCPPRPEALIGGLMKVQELIR 154


>gi|237752491|ref|ZP_04582971.1| NADH dehydrogenase subunit B [Helicobacter winghamensis ATCC
           BAA-430]
 gi|229375980|gb|EEO26071.1| NADH dehydrogenase subunit B [Helicobacter winghamensis ATCC
           BAA-430]
          Length = 176

 Score =  189 bits (480), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 86/140 (61%), Positives = 111/140 (79%), Gaps = 1/140 (0%)

Query: 40  VTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVA 99
           +TSVD+L+ W R+ SL  MT+GLACCA+EMM     RYD +RFG   RASPRQSDVMI+A
Sbjct: 25  LTSVDKLLNWGRSNSLWAMTYGLACCAIEMMATGASRYDFDRFGTIFRASPRQSDVMIIA 84

Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGC 159
           GT+T K A  +RR+YDQMPEP++VISMGSCAN GG ++ +Y+ V+G DRI+PVDIY+PGC
Sbjct: 85  GTVTKKHAQFVRRLYDQMPEPKWVISMGSCANTGGMFN-TYATVQGVDRIIPVDIYLPGC 143

Query: 160 PPTAEALIYGILLLQKKIRR 179
            P  E L Y +++LQ+KIR+
Sbjct: 144 SPRPETLQYALMVLQQKIRK 163


>gi|242310555|ref|ZP_04809710.1| NADH dehydrogenase I [Helicobacter pullorum MIT 98-5489]
 gi|239522953|gb|EEQ62819.1| NADH dehydrogenase I [Helicobacter pullorum MIT 98-5489]
          Length = 176

 Score =  189 bits (480), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 85/140 (60%), Positives = 111/140 (79%), Gaps = 1/140 (0%)

Query: 40  VTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVA 99
           +TS+D+L+ W R+ SL  MT+GLACCA+EMM     RYD +RFG   RASPRQSDVMI+A
Sbjct: 25  LTSLDKLINWGRSNSLWAMTYGLACCAIEMMATGASRYDFDRFGTIFRASPRQSDVMIIA 84

Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGC 159
           GT+T K A  +RR+YDQMPEP++VISMGSCAN GG ++ +Y+ V+G DRI+PVDIY+PGC
Sbjct: 85  GTVTKKHAQFVRRLYDQMPEPKWVISMGSCANTGGMFN-TYATVQGVDRIIPVDIYLPGC 143

Query: 160 PPTAEALIYGILLLQKKIRR 179
            P  E L Y +++LQ+KIR+
Sbjct: 144 SPRPETLQYALMVLQQKIRK 163


>gi|206970223|ref|ZP_03231176.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus cereus AH1134]
 gi|206734800|gb|EDZ51969.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus cereus AH1134]
          Length = 172

 Score =  189 bits (479), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 87/144 (60%), Positives = 110/144 (76%)

Query: 35  HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSD 94
            +    ++++QL  WAR+ SL  MTFGLACCA+EMM      YDL+RFG   R SPRQSD
Sbjct: 17  ERNIFFSTLEQLKGWARSNSLWPMTFGLACCAIEMMGVGSSHYDLDRFGSFFRTSPRQSD 76

Query: 95  VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154
           VMIV+GT+T KMA  +RR+YDQMPEP++VI+MGSCA  GG Y  SY+VV+G D+I+PVD+
Sbjct: 77  VMIVSGTVTKKMAPIVRRLYDQMPEPKWVIAMGSCATAGGPYVNSYAVVKGVDQILPVDV 136

Query: 155 YVPGCPPTAEALIYGILLLQKKIR 178
           Y+PGCPP   ALIYGI  L++KIR
Sbjct: 137 YIPGCPPNPAALIYGINKLKEKIR 160


>gi|332296570|ref|YP_004438493.1| NAD(P)H-quinone oxidoreductase subunit K [Thermodesulfobium
           narugense DSM 14796]
 gi|332179673|gb|AEE15362.1| NAD(P)H-quinone oxidoreductase subunit K [Thermodesulfobium
           narugense DSM 14796]
          Length = 178

 Score =  189 bits (479), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 86/138 (62%), Positives = 111/138 (80%), Gaps = 1/138 (0%)

Query: 42  SVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGT 101
           +++ +V W R  SL  MTFGLACCA+EMM    P  DL+RFG   RASPRQ+D+MIVAGT
Sbjct: 33  AINWVVNWGRVSSLWPMTFGLACCAIEMMAVGAPHNDLDRFGILFRASPRQADLMIVAGT 92

Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP 161
           +T KMA  LRRVYDQMP+PRYVISMGSCAN GG ++ +YSV++G D++VPVD+Y+PGCPP
Sbjct: 93  VTLKMAPVLRRVYDQMPQPRYVISMGSCANSGGIFN-TYSVLQGVDQVVPVDVYLPGCPP 151

Query: 162 TAEALIYGILLLQKKIRR 179
             EAL++ +L LQ+KI++
Sbjct: 152 RPEALLHALLYLQQKIKK 169


>gi|195953122|ref|YP_002121412.1| NADH-quinone oxidoreductase, B subunit [Hydrogenobaculum sp.
           Y04AAS1]
 gi|238065161|sp|B4U8H3|NUOB_HYDS0 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|195932734|gb|ACG57434.1| NADH-quinone oxidoreductase, B subunit [Hydrogenobaculum sp.
           Y04AAS1]
          Length = 177

 Score =  189 bits (479), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 84/151 (55%), Positives = 117/151 (77%), Gaps = 1/151 (0%)

Query: 29  ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88
           ++S I   GF+ T+VD+L++W R  +L  +T GLACCA+EMM A+  R+D++R G   RA
Sbjct: 1   MASSINGNGFITTTVDELLSWGRRNALWPVTIGLACCAIEMMHAAASRFDIDRLGMIFRA 60

Query: 89  SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 148
           SPRQ+DV+IVAGT+ NK+A  L+ V+DQMPEP++ ISMG CA+ GG +  +YS ++G DR
Sbjct: 61  SPRQADVLIVAGTVVNKVAPMLKLVWDQMPEPKWCISMGGCASAGGPFP-TYSTLQGIDR 119

Query: 149 IVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           I+PVD+Y+PGCPPT + LIYG+L LQ+KIR 
Sbjct: 120 IIPVDVYIPGCPPTPQGLIYGLLELQRKIRE 150


>gi|312886635|ref|ZP_07746242.1| NADH dehydrogenase subunit B [Mucilaginibacter paludis DSM 18603]
 gi|311300737|gb|EFQ77799.1| NADH dehydrogenase subunit B [Mucilaginibacter paludis DSM 18603]
          Length = 166

 Score =  188 bits (478), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 90/153 (58%), Positives = 119/153 (77%), Gaps = 3/153 (1%)

Query: 29  ISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP 86
           +S++IT++G   +VT +D L+ W+R  SL  ++FG+ACCA+EMM +    YDL+RFG  P
Sbjct: 1   MSNDITNEGGGIIVTKLDDLMNWSRLSSLWPLSFGIACCAIEMMGSMASTYDLDRFGVFP 60

Query: 87  RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCAN-GGGYYHYSYSVVRG 145
           R S RQ+DV+I+AGT+T KMA  ++R+Y+QMPEP+YVISMGSC+N GG Y+ + Y VV+G
Sbjct: 61  RPSARQADVIIIAGTVTFKMAERIKRLYEQMPEPKYVISMGSCSNCGGPYWQHGYHVVKG 120

Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
            DRI+PVDIYV GCPP  EALI GIL LQKKI 
Sbjct: 121 VDRIIPVDIYVQGCPPRPEALIGGILELQKKIE 153


>gi|311033318|ref|ZP_07711408.1| NADH dehydrogenase subunit B [Bacillus sp. m3-13]
          Length = 170

 Score =  188 bits (478), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 90/160 (56%), Positives = 116/160 (72%), Gaps = 3/160 (1%)

Query: 22  VDADFSRISSEITH---KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78
           +D +   IS E      +   +T++++L  WAR+ S+  MTFGLACCA+EMM      YD
Sbjct: 1   MDLNLESISPEEMEELKQTVFLTTLEELKAWARSNSMWPMTFGLACCAIEMMGVGSSHYD 60

Query: 79  LERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY 138
           L+RFG   R SPRQSD MIV+GT+T KMA  L+R+YDQMPEP++VI+MGSCA  GG Y  
Sbjct: 61  LDRFGSFFRTSPRQSDCMIVSGTVTKKMAPVLKRLYDQMPEPKWVIAMGSCATAGGPYIK 120

Query: 139 SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           SY+VV+G D+IVPVD+Y+PGCPP   ALIYGI  L++KIR
Sbjct: 121 SYAVVKGVDQIVPVDVYIPGCPPNPAALIYGINKLREKIR 160


>gi|297625190|ref|YP_003706624.1| NADH-quinone oxidoreductase subunit B [Truepera radiovictrix DSM
           17093]
 gi|297166370|gb|ADI16081.1| NADH-quinone oxidoreductase, B subunit [Truepera radiovictrix DSM
           17093]
          Length = 178

 Score =  188 bits (478), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 85/154 (55%), Positives = 119/154 (77%), Gaps = 2/154 (1%)

Query: 26  FSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA 85
           F +   E+ ++G L +++ +LV W R+ SL   TFGLACCA+EMMQ++  R+DL RFG  
Sbjct: 7   FEKDVQELENEGILFSTLSKLVAWGRSNSLWPATFGLACCAIEMMQSTNARHDLSRFGSE 66

Query: 86  P-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR 144
             RASPRQ+DVMIVAG L+ KMA  +RRVYDQMP+P++VISMG+CA+ GG ++ +Y++V+
Sbjct: 67  VFRASPRQADVMIVAGRLSKKMAPVMRRVYDQMPDPKWVISMGACASSGGMFN-NYAIVQ 125

Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
             D +VPVD++VPGCPP  EAL+Y ++ LQKK+R
Sbjct: 126 NVDSVVPVDVFVPGCPPRPEALVYAVMQLQKKVR 159


>gi|154175216|ref|YP_001407461.1| NADH dehydrogenase subunit B [Campylobacter curvus 525.92]
 gi|254767791|sp|A7GW69|NUOB_CAMC5 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|112803227|gb|EAU00571.1| 50S ribosomal protein L10 [Campylobacter curvus 525.92]
          Length = 170

 Score =  188 bits (477), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 86/141 (60%), Positives = 111/141 (78%), Gaps = 1/141 (0%)

Query: 39  LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIV 98
           ++T+VD+LV W R+ SL  +++GLACCA+EMM +   RYD +RFG   RASPR S+VMI+
Sbjct: 17  VLTTVDRLVQWGRSNSLWALSYGLACCAIEMMASGASRYDFDRFGTIFRASPRHSEVMII 76

Query: 99  AGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPG 158
           AGTLT K A   RR+YDQMPEP++VISMGSCAN GG ++ +YS V+G DRI+PVDIY+PG
Sbjct: 77  AGTLTKKHAEFTRRLYDQMPEPKWVISMGSCANTGGMFN-TYSTVQGVDRIIPVDIYLPG 135

Query: 159 CPPTAEALIYGILLLQKKIRR 179
           C P  E L Y +++LQKKIRR
Sbjct: 136 CAPRPETLQYALMILQKKIRR 156


>gi|157164838|ref|YP_001466103.1| NADH dehydrogenase subunit B [Campylobacter concisus 13826]
 gi|238055276|sp|A7ZBE5|NUOB_CAMC1 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|112800518|gb|EAT97862.1| NADH-quinone oxidoreductase, b subunit [Campylobacter concisus
           13826]
          Length = 170

 Score =  188 bits (477), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 85/141 (60%), Positives = 111/141 (78%), Gaps = 1/141 (0%)

Query: 39  LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIV 98
           ++T+VD+LV W R+ SL  +++GLACCA+EMM +   RYD +RFG   RASPR S+VMI+
Sbjct: 17  VLTTVDKLVQWGRSNSLWALSYGLACCAIEMMASGASRYDFDRFGTIFRASPRHSEVMII 76

Query: 99  AGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPG 158
           AGTLT K A   RR+YDQMPEP++VISMGSCAN GG ++ +YS V+G DRI+PVDIY+PG
Sbjct: 77  AGTLTKKHAEFTRRLYDQMPEPKWVISMGSCANTGGMFN-TYSTVQGVDRIIPVDIYIPG 135

Query: 159 CPPTAEALIYGILLLQKKIRR 179
           C P  E L Y +++LQKKIR+
Sbjct: 136 CAPRPETLQYALMMLQKKIRK 156


>gi|71754617|ref|XP_828223.1| NADH-ubiquinone oxidoreductase 20 kDa subunit mitochondrial
           precursor [Trypanosoma brucei TREU927]
 gi|6647671|sp|Q26783|NDUS7_TRYBB RecName: Full=NADH dehydrogenase [ubiquinone] iron-sulfur protein
           7, mitochondrial; AltName: Full=Complex I-20kD;
           Short=CI-20kD; AltName: Full=NADH-ubiquinone
           oxidoreductase 20 kDa subunit; Flags: Precursor
 gi|162168|gb|AAA30217.1| NADH dehydrogenase (ubiquinone) [Trypanosoma brucei]
 gi|70833609|gb|EAN79111.1| NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial
           precursor [Trypanosoma brucei]
 gi|261334029|emb|CBH17023.1| NADH-ubiquinone oxidoreductase 20 kDa subunit (mitochondrial
           precursor), putative [Trypanosoma brucei gambiense
           DAL972]
          Length = 202

 Score =  188 bits (477), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 82/137 (59%), Positives = 108/137 (78%)

Query: 42  SVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGT 101
           ++  L  W    S   +TFGLACCAVEMM A   RYDL+RFG  PR +PRQ++++IV+GT
Sbjct: 55  TLHDLTEWCLAYSPWPLTFGLACCAVEMMHAYASRYDLDRFGIVPRPTPRQAEIIIVSGT 114

Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP 161
           +TNKMA  LR +Y QM  P++VISMGSCANGGGYYH+SY+V+RGC+R +PVD ++PGCPP
Sbjct: 115 VTNKMAPILRNIYVQMVNPKWVISMGSCANGGGYYHFSYAVLRGCERAIPVDFWIPGCPP 174

Query: 162 TAEALIYGILLLQKKIR 178
           +AE+L++ +  LQKKIR
Sbjct: 175 SAESLVFCLHTLQKKIR 191


>gi|163781785|ref|ZP_02176785.1| NADH dehydrogenase I chain B [Hydrogenivirga sp. 128-5-R1-1]
 gi|159883005|gb|EDP76509.1| NADH dehydrogenase I chain B [Hydrogenivirga sp. 128-5-R1-1]
          Length = 179

 Score =  187 bits (476), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 85/154 (55%), Positives = 116/154 (75%), Gaps = 1/154 (0%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP 90
           + I   GF+ T+VD+L+ W R  +L  +T GLACCA+EMM A+  R+DL+R G   RASP
Sbjct: 2   ASINSNGFVTTTVDELLKWGRRNALWPVTIGLACCAIEMMHAAASRFDLDRLGVIFRASP 61

Query: 91  RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150
           RQSDV+IVAGT+ NK+A  L+ ++DQMP+P++ ISMG C++ GG +  +YS ++G DRI+
Sbjct: 62  RQSDVLIVAGTVVNKVAPMLKLIWDQMPDPKWCISMGGCSSAGGPFP-TYSTLQGIDRII 120

Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           PVD+YVPGCPPT + LIYGIL LQ+KI+  G  K
Sbjct: 121 PVDVYVPGCPPTPQGLIYGILQLQRKIKEQGVTK 154


>gi|89895333|ref|YP_518820.1| NADH dehydrogenase I chain B [Desulfitobacterium hafniense Y51]
 gi|219669767|ref|YP_002460202.1| NADH dehydrogenase subunit B [Desulfitobacterium hafniense DCB-2]
 gi|122482325|sp|Q24UB6|NUOB_DESHY RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|238065122|sp|B8FRK6|NUOB_DESHD RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|89334781|dbj|BAE84376.1| NADH dehydrogenase I chain B [Desulfitobacterium hafniense Y51]
 gi|219540027|gb|ACL21766.1| NADH-quinone oxidoreductase, B subunit [Desulfitobacterium
           hafniense DCB-2]
          Length = 173

 Score =  187 bits (476), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 87/158 (55%), Positives = 115/158 (72%), Gaps = 1/158 (0%)

Query: 28  RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP- 86
           R +  +  K  L+TS+D+++ W R  S   +TFGLACCA+EMM A  PR D+ RFG+   
Sbjct: 10  REAEALMEKNVLLTSIDKVLNWGRGHSFWPVTFGLACCAIEMMAAGGPRVDISRFGYEVF 69

Query: 87  RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGC 146
           RASPR +DVMIVAGT T KMA  LR +YDQMPEP++VI+MGSCA+ GG +  SYS++ G 
Sbjct: 70  RASPRHADVMIVAGTCTRKMAPLLRMIYDQMPEPKWVIAMGSCASAGGPFADSYSMLTGV 129

Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           D+IVPVD+Y+PGCPP  E+L+YG+L LQ K+     V+
Sbjct: 130 DKIVPVDVYIPGCPPRPESLVYGLLQLQHKVNHPDKVR 167


>gi|297565713|ref|YP_003684685.1| NADH-quinone oxidoreductase subunit B [Meiothermus silvanus DSM
           9946]
 gi|296850162|gb|ADH63177.1| NADH-quinone oxidoreductase, B subunit [Meiothermus silvanus DSM
           9946]
          Length = 179

 Score =  187 bits (476), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 87/154 (56%), Positives = 119/154 (77%), Gaps = 2/154 (1%)

Query: 26  FSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA 85
           FS+   E+ ++G L T++++LV W R+ SL   TFGLACCA+EMM ++  R DL RFG  
Sbjct: 8   FSKDVQELENEGVLFTTLEKLVAWGRSNSLWPATFGLACCAIEMMASTDARNDLARFGSE 67

Query: 86  P-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR 144
             RASPRQ+DVMIVAG L+ KMA  +RRVYDQMP+P++VISMG+CA+ GG ++ +Y++V+
Sbjct: 68  VFRASPRQADVMIVAGRLSKKMAPVMRRVYDQMPDPKWVISMGACASSGGMFN-NYAIVQ 126

Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
             D +VPVD+YVPGCPP  EALIY ++ LQKK++
Sbjct: 127 NVDSVVPVDVYVPGCPPRPEALIYAVMQLQKKVQ 160


>gi|254456709|ref|ZP_05070137.1| NADH dehydrogenase i chain b [Campylobacterales bacterium GD 1]
 gi|207085501|gb|EDZ62785.1| NADH dehydrogenase i chain b [Campylobacterales bacterium GD 1]
          Length = 169

 Score =  187 bits (475), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 84/139 (60%), Positives = 110/139 (79%), Gaps = 1/139 (0%)

Query: 40  VTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVA 99
           +TS+D++V W R+ SL  +T+GLACC +EMM +   RYD +RFG   RASPRQ+DVMIVA
Sbjct: 18  LTSIDKIVNWGRSNSLWALTYGLACCGIEMMASGASRYDFDRFGTIFRASPRQADVMIVA 77

Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGC 159
           GTLT K A  ++R+YDQM EPR+VISMGSCAN GG ++ +Y+ V+G DRI+PVD+Y+PGC
Sbjct: 78  GTLTKKHAEFIKRLYDQMTEPRWVISMGSCANTGGMFN-TYATVQGVDRIIPVDLYLPGC 136

Query: 160 PPTAEALIYGILLLQKKIR 178
            P  E L YG++LLQ+KIR
Sbjct: 137 APRPETLQYGVMLLQQKIR 155


>gi|154339768|ref|XP_001565841.1| NADH-ubiquinone oxidoreductase 20 kDa subunit,mitochondrial
           precursor [Leishmania braziliensis MHOM/BR/75/M2904]
 gi|134063159|emb|CAM45359.1| NADH-ubiquinone oxidoreductase 20 kDa subunit,mitochondrial
           precursor [Leishmania braziliensis MHOM/BR/75/M2904]
          Length = 201

 Score =  187 bits (475), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 82/137 (59%), Positives = 108/137 (78%)

Query: 42  SVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGT 101
           ++  L  W    S   +TFGLACCAVEMM +   RYDL+RFG  PR SPRQ++++IV+GT
Sbjct: 55  TLHDLTEWVLAYSPWPLTFGLACCAVEMMHSYSSRYDLDRFGIVPRPSPRQAEIIIVSGT 114

Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP 161
           +TNKMA  LR +Y QM  P++VISMGSCANGGGYYH+SY+V+RGC+R +PVD ++PGCPP
Sbjct: 115 VTNKMAPLLRNIYVQMVNPKWVISMGSCANGGGYYHFSYAVLRGCERSIPVDFWIPGCPP 174

Query: 162 TAEALIYGILLLQKKIR 178
           +AE+L++ +  LQKKIR
Sbjct: 175 SAESLVFCLHNLQKKIR 191


>gi|73544267|ref|XP_848028.1| NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial
           precursor [Leishmania major strain Friedlin]
 gi|146094718|ref|XP_001467361.1| NADH-ubiquinone oxidoreductase [Leishmania infantum JPCM5]
 gi|321398434|emb|CBZ08822.1| NADH-ubiquinone oxidoreductase 20 kDa subunit,mitochondrial
           precursor [Leishmania infantum JPCM5]
 gi|321438382|emb|CBZ12134.1| NADH-ubiquinone oxidoreductase 20 kDa subunit,mitochondrial
           precursor [Leishmania major strain Friedlin]
 gi|322492890|emb|CBZ28169.1| NADH-ubiquinone oxidoreductase 20 kDa subunit,mitochondrial
           precursor [Leishmania mexicana MHOM/GT/2001/U1103]
 gi|322500143|emb|CBZ35218.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 201

 Score =  187 bits (475), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 82/137 (59%), Positives = 108/137 (78%)

Query: 42  SVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGT 101
           ++  L  W    S   +TFGLACCAVEMM +   RYDL+RFG  PR SPRQ++++IV+GT
Sbjct: 55  TLHDLTEWVVAYSPWPLTFGLACCAVEMMHSYSSRYDLDRFGIVPRPSPRQAEIIIVSGT 114

Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP 161
           +TNKMA  LR +Y QM  P++VISMGSCANGGGYYH+SY+V+RGC+R +PVD ++PGCPP
Sbjct: 115 VTNKMAPLLRNIYVQMVNPKWVISMGSCANGGGYYHFSYAVLRGCERAIPVDFWIPGCPP 174

Query: 162 TAEALIYGILLLQKKIR 178
           +AE+L++ +  LQKKIR
Sbjct: 175 SAESLVFCLHNLQKKIR 191


>gi|15806517|ref|NP_295228.1| NADH dehydrogenase subunit B [Deinococcus radiodurans R1]
 gi|81624845|sp|Q9RU87|NUOB_DEIRA RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|6459265|gb|AAF11070.1|AE001994_6 NADH dehydrogenase I, B subunit [Deinococcus radiodurans R1]
          Length = 181

 Score =  187 bits (475), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 90/160 (56%), Positives = 120/160 (75%), Gaps = 6/160 (3%)

Query: 20  EKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDL 79
           E +D D+  + SE    G L +S+++LV W R+ SL   TFGLACCA+EMM ++  R D+
Sbjct: 5   ELIDRDWQELESE----GVLFSSLEKLVAWGRSNSLWPATFGLACCAIEMMSSTNARNDM 60

Query: 80  ERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY 138
            RFG    RASPRQ+DVMIVAG L+ KMA  +RRVYDQMP+P++VISMG+CA+ GG ++ 
Sbjct: 61  SRFGSEVFRASPRQADVMIVAGRLSKKMAPVMRRVYDQMPDPKWVISMGACASSGGMFN- 119

Query: 139 SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           +Y+VV+  D +VPVDI+VPGCPP  EALIY ++ LQKK+R
Sbjct: 120 NYAVVQNVDSVVPVDIFVPGCPPRPEALIYAVMQLQKKVR 159


>gi|228917908|ref|ZP_04081444.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
           [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1]
 gi|228949019|ref|ZP_04111292.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
           [Bacillus thuringiensis serovar monterrey BGSC 4AJ1]
 gi|228968422|ref|ZP_04129414.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
           [Bacillus thuringiensis serovar sotto str. T04001]
 gi|228988523|ref|ZP_04148611.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
           [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1]
 gi|229076513|ref|ZP_04209474.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
           [Bacillus cereus Rock4-18]
 gi|229094409|ref|ZP_04225481.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
           [Bacillus cereus Rock3-42]
 gi|229099732|ref|ZP_04230658.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
           [Bacillus cereus Rock3-29]
 gi|229118795|ref|ZP_04248145.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
           [Bacillus cereus Rock1-3]
 gi|229124802|ref|ZP_04253981.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
           [Bacillus cereus 95/8201]
 gi|229142039|ref|ZP_04270564.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
           [Bacillus cereus BDRD-ST26]
 gi|229175973|ref|ZP_04303469.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
           [Bacillus cereus MM3]
 gi|228607466|gb|EEK64792.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
           [Bacillus cereus MM3]
 gi|228641328|gb|EEK97634.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
           [Bacillus cereus BDRD-ST26]
 gi|228658677|gb|EEL14338.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
           [Bacillus cereus 95/8201]
 gi|228664665|gb|EEL20157.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
           [Bacillus cereus Rock1-3]
 gi|228683702|gb|EEL37654.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
           [Bacillus cereus Rock3-29]
 gi|228688946|gb|EEL42773.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
           [Bacillus cereus Rock3-42]
 gi|228706605|gb|EEL58817.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
           [Bacillus cereus Rock4-18]
 gi|228771203|gb|EEM19681.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
           [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1]
 gi|228791270|gb|EEM38880.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
           [Bacillus thuringiensis serovar sotto str. T04001]
 gi|228810775|gb|EEM57123.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
           [Bacillus thuringiensis serovar monterrey BGSC 4AJ1]
 gi|228841705|gb|EEM86816.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
           [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1]
          Length = 148

 Score =  187 bits (474), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 88/136 (64%), Positives = 107/136 (78%)

Query: 43  VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL 102
           ++QL  WAR+ SL  MTFGLACCA+EMM      YDL+RFG   R SPRQSDVMIV+GT+
Sbjct: 1   MEQLKGWARSNSLWPMTFGLACCAIEMMGVGSSHYDLDRFGSFFRTSPRQSDVMIVSGTV 60

Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162
           T KMA  +RR+YDQMPEP++VI+MGSCA  GG Y  SY+VV+G D+IVPVD+Y+PGCPP 
Sbjct: 61  TKKMAPIVRRLYDQMPEPKWVIAMGSCATAGGPYVNSYAVVKGVDQIVPVDVYIPGCPPN 120

Query: 163 AEALIYGILLLQKKIR 178
             ALIYGI  L++KIR
Sbjct: 121 PAALIYGINKLKEKIR 136


>gi|228936583|ref|ZP_04099378.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
           [Bacillus thuringiensis serovar andalousiensis BGSC
           4AW1]
 gi|228823098|gb|EEM68935.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
           [Bacillus thuringiensis serovar andalousiensis BGSC
           4AW1]
          Length = 148

 Score =  187 bits (474), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 88/136 (64%), Positives = 107/136 (78%)

Query: 43  VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL 102
           ++QL  WAR+ SL  MTFGLACCA+EMM      YDL+RFG   R SPRQSDVMIV+GT+
Sbjct: 1   MEQLKGWARSNSLWPMTFGLACCAIEMMGVGSSHYDLDRFGSFFRTSPRQSDVMIVSGTV 60

Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162
           T KMA  +RR+YDQMPEP++VI+MGSCA  GG Y  SY+VV+G D+IVPVD+Y+PGCPP 
Sbjct: 61  TKKMAPIVRRLYDQMPEPKWVIAMGSCATAGGPYVNSYAVVKGVDQIVPVDVYIPGCPPN 120

Query: 163 AEALIYGILLLQKKIR 178
             ALIYGI  L++KIR
Sbjct: 121 PAALIYGINKLKEKIR 136


>gi|67528182|ref|XP_661901.1| hypothetical protein AN4297.2 [Aspergillus nidulans FGSC A4]
 gi|40740847|gb|EAA60037.1| hypothetical protein AN4297.2 [Aspergillus nidulans FGSC A4]
          Length = 184

 Score =  186 bits (473), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 86/102 (84%), Positives = 94/102 (92%)

Query: 77  YDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY 136
           YD +R G   RASPRQSDVMIVAGTLTNKMA ALR+VYDQMP+PR+VISMGSCANGGGYY
Sbjct: 72  YDQDRLGIIFRASPRQSDVMIVAGTLTNKMAPALRQVYDQMPDPRWVISMGSCANGGGYY 131

Query: 137 HYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           HYSYSVVRGCDRIVPVD+YVPGCPPT+EAL+YGI  LQKK+R
Sbjct: 132 HYSYSVVRGCDRIVPVDVYVPGCPPTSEALMYGIFQLQKKMR 173


>gi|326474729|gb|EGD98738.1| NADH-ubiquinone oxidoreductase subunit B [Trichophyton tonsurans
           CBS 112818]
          Length = 204

 Score =  186 bits (473), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 94/141 (66%), Positives = 105/141 (74%), Gaps = 14/141 (9%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           + +T++DQ+  WAR GSL  MTFGLACCAVEMM  S PRYD +R G   RASPRQSDVMI
Sbjct: 67  YALTTLDQVANWARQGSLWPMTFGLACCAVEMMHLSTPRYDQDRLGIIFRASPRQSDVMI 126

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGTLTNKMA ALR+VYDQMP P            G Y    YSV RGCDRIVPVDIYVP
Sbjct: 127 VAGTLTNKMAPALRQVYDQMPGPTL----------GDY----YSVTRGCDRIVPVDIYVP 172

Query: 158 GCPPTAEALIYGILLLQKKIR 178
           GCPPT+EAL+YGI  LQ+K+R
Sbjct: 173 GCPPTSEALMYGIFQLQRKMR 193


>gi|325996536|gb|ADZ51941.1| NADH-ubiquinone oxidoreductase chain B [Helicobacter pylori 2018]
 gi|325998125|gb|ADZ50333.1| NADH-ubiquinone oxidoreductase chain B [Helicobacter pylori 2017]
          Length = 159

 Score =  186 bits (473), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 85/146 (58%), Positives = 113/146 (77%), Gaps = 1/146 (0%)

Query: 39  LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIV 98
           +++++D+L+ W R+ SL  +T+GLACCA+EMM     R+D +RFG   RASPRQSDVMI+
Sbjct: 7   ILSTLDKLLNWGRSNSLWPLTYGLACCAIEMMATGGSRFDFDRFGTIFRASPRQSDVMII 66

Query: 99  AGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPG 158
           AGTLT K A  +RR+YDQMPEP++VISMGSCAN GG ++ +Y+ V+G DRIVPVDIY+PG
Sbjct: 67  AGTLTKKHAEFMRRLYDQMPEPKWVISMGSCANTGGMFN-TYATVQGADRIVPVDIYLPG 125

Query: 159 CPPTAEALIYGILLLQKKIRRVGNVK 184
           C P  E L Y +++LQ KIRR   +K
Sbjct: 126 CAPRPETLQYALMVLQDKIRRSKAIK 151


>gi|291296255|ref|YP_003507653.1| NADH-quinone oxidoreductase B subunit [Meiothermus ruber DSM 1279]
 gi|290471214|gb|ADD28633.1| NADH-quinone oxidoreductase, B subunit [Meiothermus ruber DSM 1279]
          Length = 179

 Score =  186 bits (473), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 85/154 (55%), Positives = 119/154 (77%), Gaps = 2/154 (1%)

Query: 26  FSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA 85
           F++   E+ ++G L T++++L+ W R+ SL   TFGLACCA+EMM ++  R DL RFG  
Sbjct: 8   FTKDVQELENEGVLFTTLEKLIAWGRSNSLWPATFGLACCAIEMMASTDARNDLSRFGSE 67

Query: 86  P-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR 144
             RASPRQ+DVMIVAG L+ KMA  +RRVYDQMP+P++VISMG+CA+ GG ++ +Y++V+
Sbjct: 68  VFRASPRQADVMIVAGRLSKKMAPVMRRVYDQMPDPKWVISMGACASSGGMFN-NYAIVQ 126

Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
             D +VPVD++VPGCPP  EALIY ++ LQKKI+
Sbjct: 127 NVDSVVPVDVFVPGCPPRPEALIYAVMQLQKKIQ 160


>gi|208435155|ref|YP_002266821.1| NADH-ubiquinone oxidoreductase chain B [Helicobacter pylori G27]
 gi|210135420|ref|YP_002301859.1| NADH dehydrogenase subunit B [Helicobacter pylori P12]
 gi|217032322|ref|ZP_03437818.1| hypothetical protein HPB128_132g20 [Helicobacter pylori B128]
 gi|254779804|ref|YP_003057910.1| NADH dehydrogenase subunit B [Helicobacter pylori B38]
 gi|298735715|ref|YP_003728240.1| NADH dehydrogenase I subunit B [Helicobacter pylori B8]
 gi|308183371|ref|YP_003927498.1| NADH dehydrogenase subunit B [Helicobacter pylori PeCan4]
 gi|308185009|ref|YP_003929142.1| NADH dehydrogenase subunit B [Helicobacter pylori SJM180]
 gi|238065158|sp|B6JNA1|NUOB_HELP2 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|238065159|sp|B5Z8Q6|NUOB_HELPG RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|208433084|gb|ACI27955.1| NADH-ubiquinone oxidoreductase chain B [Helicobacter pylori G27]
 gi|210133388|gb|ACJ08379.1| NADH-ubiquinone oxidoreductase chain B [Helicobacter pylori P12]
 gi|216945988|gb|EEC24602.1| hypothetical protein HPB128_132g20 [Helicobacter pylori B128]
 gi|254001716|emb|CAX29947.1| NADH-ubiquinone oxidoreductase, NQO6 subunit [Helicobacter pylori
           B38]
 gi|261838584|gb|ACX98350.1| NADH-ubiquinone oxidoreductase chain B [Helicobacter pylori 51]
 gi|261839979|gb|ACX99744.1| NADH dehydrogenase subunit B [Helicobacter pylori 52]
 gi|298354904|emb|CBI65776.1| NADH dehydrogenase I chain B [Helicobacter pylori B8]
 gi|308060929|gb|ADO02825.1| NADH dehydrogenase subunit B [Helicobacter pylori SJM180]
 gi|308065556|gb|ADO07448.1| NADH dehydrogenase subunit B [Helicobacter pylori PeCan4]
 gi|317013049|gb|ADU83657.1| NADH dehydrogenase subunit B [Helicobacter pylori Lithuania75]
 gi|317014652|gb|ADU82088.1| NADH dehydrogenase subunit B [Helicobacter pylori Gambia94/24]
          Length = 159

 Score =  186 bits (472), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 85/146 (58%), Positives = 113/146 (77%), Gaps = 1/146 (0%)

Query: 39  LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIV 98
           +++++D+L+ W R+ SL  +T+GLACCA+EMM     R+D +RFG   RASPRQSDVMI+
Sbjct: 7   VLSTLDKLLNWGRSNSLWPLTYGLACCAIEMMATGGSRFDFDRFGTIFRASPRQSDVMII 66

Query: 99  AGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPG 158
           AGTLT K A  +RR+YDQMPEP++VISMGSCAN GG ++ +Y+ V+G DRIVPVDIY+PG
Sbjct: 67  AGTLTKKHAEFMRRLYDQMPEPKWVISMGSCANTGGMFN-TYATVQGADRIVPVDIYLPG 125

Query: 159 CPPTAEALIYGILLLQKKIRRVGNVK 184
           C P  E L Y +++LQ KIRR   +K
Sbjct: 126 CAPRPETLQYALMVLQDKIRRSKAIK 151


>gi|328950032|ref|YP_004367367.1| NAD(P)H-quinone oxidoreductase subunit K [Marinithermus
           hydrothermalis DSM 14884]
 gi|328450356|gb|AEB11257.1| NAD(P)H-quinone oxidoreductase subunit K [Marinithermus
           hydrothermalis DSM 14884]
          Length = 179

 Score =  186 bits (471), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 87/154 (56%), Positives = 116/154 (75%), Gaps = 2/154 (1%)

Query: 26  FSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA 85
           F R   E+  +G   T++++LV W R+ SL   TFGLACCA+EMM ++  R DL RFG  
Sbjct: 7   FERDVQELERQGVFFTTLEKLVAWGRSNSLWPATFGLACCAIEMMASTDARNDLARFGSE 66

Query: 86  P-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR 144
             RASPRQ+DVMIVAG L+ KMA  +RRVYDQMP+P++VISMG+CA+ GG ++ +Y++V+
Sbjct: 67  VFRASPRQADVMIVAGRLSKKMAPVMRRVYDQMPDPKWVISMGACASSGGMFN-NYAIVQ 125

Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
             D +VPVD++VPGCPP  EALIY ++ LQKKIR
Sbjct: 126 NVDSVVPVDVFVPGCPPRPEALIYAVMQLQKKIR 159


>gi|268678781|ref|YP_003303212.1| NADH-quinone oxidoreductase subunit beta [Sulfurospirillum
           deleyianum DSM 6946]
 gi|268616812|gb|ACZ11177.1| NADH-quinone oxidoreductase, B subunit [Sulfurospirillum deleyianum
           DSM 6946]
          Length = 169

 Score =  186 bits (471), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 85/139 (61%), Positives = 110/139 (79%), Gaps = 1/139 (0%)

Query: 40  VTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVA 99
           +T+VD+LV W R+ SL  +T+GLACCA+EMM     RYD +RFG   RASPRQ+DV+++A
Sbjct: 18  LTTVDKLVQWGRSNSLWPLTYGLACCAIEMMATGASRYDFDRFGTIFRASPRQADVIVIA 77

Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGC 159
           GTLT K A  +RR+YDQMP+P++VISMGSCAN GG ++ +Y+ V+G DRIVPVDIY+PGC
Sbjct: 78  GTLTKKHAPFMRRLYDQMPDPKWVISMGSCANTGGMFN-TYATVQGADRIVPVDIYLPGC 136

Query: 160 PPTAEALIYGILLLQKKIR 178
            P  E L Y ++LLQKKIR
Sbjct: 137 APRPETLQYALMLLQKKIR 155


>gi|226355360|ref|YP_002785100.1| NADH dehydrogenase subunit B [Deinococcus deserti VCD115]
 gi|259514659|sp|C1D0H2|NUOB_DEIDV RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|226317350|gb|ACO45346.1| putative NADH dehydrogenase (quinone), subunit B (NADH-quinone
           oxidoreductase, subunit B) [Deinococcus deserti VCD115]
          Length = 178

 Score =  186 bits (471), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 86/154 (55%), Positives = 117/154 (75%), Gaps = 2/154 (1%)

Query: 26  FSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA 85
           F R   E+  +G L +++++LV W R+ SL   TFGLACCA+EMM ++  R D+ RFG  
Sbjct: 7   FDRDWQELESEGILFSNLEKLVAWGRSNSLWPATFGLACCAIEMMSSTNARNDMARFGSE 66

Query: 86  P-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR 144
             RASPRQ+DVMIVAG L+ KMA  +RRVYDQMP+P++VI+MG+CA+ GG ++ +Y++V+
Sbjct: 67  VFRASPRQADVMIVAGRLSKKMAPVMRRVYDQMPDPKWVIAMGACASSGGMFN-NYAIVQ 125

Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
             D +VPVDIYVPGCPP  EALIY ++ LQKK+R
Sbjct: 126 NVDSVVPVDIYVPGCPPRPEALIYAVMQLQKKVR 159


>gi|154148789|ref|YP_001405790.1| NADH dehydrogenase subunit B [Campylobacter hominis ATCC BAA-381]
 gi|218527983|sp|A7HZU9|NUOB_CAMHC RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|153804798|gb|ABS51805.1| NADH-quinone oxidoreductase, b subunit [Campylobacter hominis ATCC
           BAA-381]
          Length = 169

 Score =  186 bits (471), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 83/141 (58%), Positives = 110/141 (78%), Gaps = 1/141 (0%)

Query: 39  LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIV 98
           ++T++D+LV W R+ SL  M +GLACCA+EMM     RYD +RFG   RAS +QS+VM++
Sbjct: 17  VLTTIDKLVNWGRSNSLWAMNYGLACCAIEMMATGASRYDFDRFGTIFRASAKQSEVMVI 76

Query: 99  AGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPG 158
           AGTL+ K A   RR+YD MPEP++VISMGSCAN GG ++ +Y+VV+GCDRI+PVDIY+PG
Sbjct: 77  AGTLSKKHAELARRLYDAMPEPKWVISMGSCANTGGMFN-TYAVVQGCDRIIPVDIYLPG 135

Query: 159 CPPTAEALIYGILLLQKKIRR 179
           C P  E L Y +++LQKKIRR
Sbjct: 136 CAPRPETLQYALMILQKKIRR 156


>gi|124515815|gb|EAY57324.1| NADH dehydrogenase (ubiquinone), B subunit [Leptospirillum rubarum]
          Length = 178

 Score =  186 bits (471), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 90/142 (63%), Positives = 112/142 (78%), Gaps = 2/142 (1%)

Query: 39  LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMI 97
           L  +V++L+ W+R  +L  MTFGLACCA+EMM A   R+D++RFG    RASPRQSD+MI
Sbjct: 18  LQDAVNELLNWSRKSALWPMTFGLACCAIEMMGAVASRFDIDRFGAGVFRASPRQSDLMI 77

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGTLT KMA  +RR+YDQMPEPRYVI+MGSCA  G  Y  SYSVV+G DRI+PVD+YVP
Sbjct: 78  VAGTLTRKMAPVVRRIYDQMPEPRYVIAMGSCATSGNIYD-SYSVVQGVDRIIPVDVYVP 136

Query: 158 GCPPTAEALIYGILLLQKKIRR 179
           GCPP  EAL+ G++ LQ+KI +
Sbjct: 137 GCPPRPEALLDGLMKLQEKIMK 158


>gi|15612247|ref|NP_223900.1| NADH dehydrogenase subunit B [Helicobacter pylori J99]
 gi|81625872|sp|Q9ZJW6|NUOB_HELPJ RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|4155792|gb|AAD06768.1| NADH oxidoreductase I [Helicobacter pylori J99]
 gi|308064039|gb|ADO05926.1| NADH dehydrogenase subunit B [Helicobacter pylori Sat464]
          Length = 159

 Score =  186 bits (471), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 84/146 (57%), Positives = 113/146 (77%), Gaps = 1/146 (0%)

Query: 39  LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIV 98
           +++++D+L+ W R+ SL  +T+GLACCA+EMM     R+D +RFG   RASPRQSDVMI+
Sbjct: 7   ILSTLDKLLNWGRSNSLWPLTYGLACCAIEMMATGGSRFDFDRFGTIFRASPRQSDVMII 66

Query: 99  AGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPG 158
           AGTLT K A  +RR+YDQMPEP++VISMGSCAN GG ++ +Y+ V+G DR+VPVDIY+PG
Sbjct: 67  AGTLTKKHAEFMRRLYDQMPEPKWVISMGSCANTGGMFN-TYATVQGADRVVPVDIYLPG 125

Query: 159 CPPTAEALIYGILLLQKKIRRVGNVK 184
           C P  E L Y +++LQ KIRR   +K
Sbjct: 126 CAPRPETLQYALMVLQDKIRRSKAIK 151


>gi|320449689|ref|YP_004201785.1| NADH-quinone oxidoreductase subunit B [Thermus scotoductus SA-01]
 gi|320149858|gb|ADW21236.1| NADH-quinone oxidoreductase, subunit B [Thermus scotoductus SA-01]
          Length = 181

 Score =  186 bits (471), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 86/154 (55%), Positives = 117/154 (75%), Gaps = 2/154 (1%)

Query: 26  FSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA 85
           F R   E+  +G L T++++LV W R+ SL   TFGLACCA+EMM ++  R DL RFG  
Sbjct: 7   FERDVQELEREGILFTTLEKLVAWGRSNSLWPATFGLACCAIEMMASTDARNDLARFGSE 66

Query: 86  P-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR 144
             RASPRQ+DVMIVAG L+ KMA  +RRV++QMP+P++VISMG+CA+ GG ++ +Y++V+
Sbjct: 67  VFRASPRQADVMIVAGRLSKKMAPVMRRVWEQMPDPKWVISMGACASSGGMFN-NYAIVQ 125

Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
             D +VPVD+YVPGCPP  EALIY ++ LQKK+R
Sbjct: 126 NVDSVVPVDVYVPGCPPRPEALIYAVMQLQKKVR 159


>gi|109946844|ref|YP_664072.1| NADH dehydrogenase subunit B [Helicobacter acinonychis str. Sheeba]
 gi|122973434|sp|Q17Z53|NUOB_HELAH RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|109714065|emb|CAJ99073.1| NADH dehydrogenase I chain B [Helicobacter acinonychis str. Sheeba]
 gi|317011461|gb|ADU85208.1| NADH dehydrogenase subunit B [Helicobacter pylori SouthAfrica7]
          Length = 159

 Score =  186 bits (471), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 84/146 (57%), Positives = 113/146 (77%), Gaps = 1/146 (0%)

Query: 39  LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIV 98
           +++++D+L+ W R+ SL  +T+GLACCA+EMM     R+D +RFG   RASPRQSDVMI+
Sbjct: 7   VLSTLDKLLNWGRSNSLWPLTYGLACCAIEMMATGGSRFDFDRFGTIFRASPRQSDVMII 66

Query: 99  AGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPG 158
           AGTLT K A  +RR+YDQMPEP++VISMGSCAN GG ++ +Y+ V+G DRI+PVDIY+PG
Sbjct: 67  AGTLTKKHAEFMRRLYDQMPEPKWVISMGSCANTGGMFN-TYATVQGADRIIPVDIYLPG 125

Query: 159 CPPTAEALIYGILLLQKKIRRVGNVK 184
           C P  E L Y +++LQ KIRR   +K
Sbjct: 126 CAPRPETLQYALMVLQDKIRRSKAIK 151


>gi|121534363|ref|ZP_01666187.1| NADH-quinone oxidoreductase, B subunit [Thermosinus carboxydivorans
           Nor1]
 gi|121307133|gb|EAX48051.1| NADH-quinone oxidoreductase, B subunit [Thermosinus carboxydivorans
           Nor1]
          Length = 173

 Score =  186 bits (471), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 88/155 (56%), Positives = 119/155 (76%), Gaps = 1/155 (0%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RAS 89
            E+  K  ++T+V+ +++WAR  SL  +T GLACCA+EMM A+  R+DL RFG+   R S
Sbjct: 13  QELLAKNIILTTVETVLSWARGNSLWPLTSGLACCAIEMMCAASGRFDLARFGYEVFRPS 72

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQ+D++I AGTLT KMA  L+R+Y+QMPEP+YVI+MGSCAN GG +  SY+VV G D +
Sbjct: 73  PRQADLLIAAGTLTWKMAPVLKRLYEQMPEPKYVIAMGSCANTGGPFADSYAVVPGVDYV 132

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           +PVD+Y+PGCPP  EALI+GIL L++KI+  G VK
Sbjct: 133 IPVDVYIPGCPPRPEALIHGILQLKRKIQNPGVVK 167


>gi|32267101|ref|NP_861133.1| NADH dehydrogenase subunit B [Helicobacter hepaticus ATCC 51449]
 gi|81665416|sp|Q7VFS3|NUOB_HELHP RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|32263153|gb|AAP78199.1| donor-ubiquinone reductase I [Helicobacter hepaticus ATCC 51449]
          Length = 169

 Score =  185 bits (470), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 84/142 (59%), Positives = 114/142 (80%), Gaps = 1/142 (0%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
            +++SVD+L+ W+R+ SL  +T+GLACCA+EMM     R+DL+RFG   RASPRQSD+MI
Sbjct: 16  IVLSSVDKLLNWSRSNSLWGVTYGLACCAIEMMATGGSRFDLDRFGSIFRASPRQSDLMI 75

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           ++GT+T K A  +RR+YDQMPEP++VISMGSCAN GG ++ +Y+ V+G DRI+PVDIY+P
Sbjct: 76  ISGTVTKKHAEFVRRLYDQMPEPKWVISMGSCANTGGMFN-TYATVQGVDRIIPVDIYLP 134

Query: 158 GCPPTAEALIYGILLLQKKIRR 179
           GC P  E L Y I++LQ+KIRR
Sbjct: 135 GCAPRPETLQYAIMVLQQKIRR 156


>gi|15645875|ref|NP_208053.1| NADH dehydrogenase subunit B [Helicobacter pylori 26695]
 gi|108563630|ref|YP_627946.1| NADH dehydrogenase subunit B [Helicobacter pylori HPAG1]
 gi|188528050|ref|YP_001910737.1| NADH dehydrogenase subunit B [Helicobacter pylori Shi470]
 gi|207091614|ref|ZP_03239401.1| NADH dehydrogenase subunit B [Helicobacter pylori HPKX_438_AG0C1]
 gi|207108182|ref|ZP_03242344.1| NADH dehydrogenase subunit B [Helicobacter pylori HPKX_438_CA4C1]
 gi|217033582|ref|ZP_03439010.1| hypothetical protein HP9810_899g18 [Helicobacter pylori 98-10]
 gi|81555857|sp|O25851|NUOB_HELPY RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|123073732|sp|Q1CS00|NUOB_HELPH RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|238065160|sp|B2UV25|NUOB_HELPS RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|2314428|gb|AAD08307.1| NADH-ubiquinone oxidoreductase, NQO6 subunit (NQO6) [Helicobacter
           pylori 26695]
 gi|107837403|gb|ABF85272.1| NADH-ubiquinone oxidoreductase chain B [Helicobacter pylori HPAG1]
 gi|188144290|gb|ACD48707.1| NADH dehydrogenase subunit B [Helicobacter pylori Shi470]
 gi|216943928|gb|EEC23362.1| hypothetical protein HP9810_899g18 [Helicobacter pylori 98-10]
 gi|297380441|gb|ADI35328.1| NADH-quinone oxidoreductase, B subunit [Helicobacter pylori v225d]
 gi|308062545|gb|ADO04433.1| NADH dehydrogenase subunit B [Helicobacter pylori Cuz20]
 gi|315587152|gb|ADU41533.1| NADH-quinone oxidoreductase subunit B [Helicobacter pylori 35A]
 gi|317009945|gb|ADU80525.1| NADH dehydrogenase subunit B [Helicobacter pylori India7]
 gi|317178004|dbj|BAJ55793.1| NADH dehydrogenase subunit B [Helicobacter pylori F16]
 gi|317178445|dbj|BAJ56233.1| NADH dehydrogenase subunit B [Helicobacter pylori F30]
 gi|317180987|dbj|BAJ58773.1| NADH dehydrogenase subunit B [Helicobacter pylori F32]
 gi|317182510|dbj|BAJ60294.1| NADH dehydrogenase subunit B [Helicobacter pylori F57]
 gi|332674064|gb|AEE70881.1| NADH-quinone oxidoreductase subunit B [Helicobacter pylori 83]
          Length = 159

 Score =  185 bits (470), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 84/146 (57%), Positives = 113/146 (77%), Gaps = 1/146 (0%)

Query: 39  LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIV 98
           +++++D+L+ W R+ SL  +T+GLACCA+EMM     R+D +RFG   RASPRQSDVMI+
Sbjct: 7   VLSTLDKLLNWGRSNSLWPLTYGLACCAIEMMATGGSRFDFDRFGTIFRASPRQSDVMII 66

Query: 99  AGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPG 158
           AGTLT K A  +RR+YDQMPEP++VISMGSCAN GG ++ +Y+ V+G DR+VPVDIY+PG
Sbjct: 67  AGTLTKKHAEFMRRLYDQMPEPKWVISMGSCANTGGMFN-TYATVQGADRVVPVDIYLPG 125

Query: 159 CPPTAEALIYGILLLQKKIRRVGNVK 184
           C P  E L Y +++LQ KIRR   +K
Sbjct: 126 CAPRPETLQYALMVLQDKIRRSKAIK 151


>gi|94985017|ref|YP_604381.1| NADH-quinone oxidoreductase, B subunit [Deinococcus geothermalis
           DSM 11300]
 gi|238055292|sp|Q1IZX2|NUOB_DEIGD RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|94555298|gb|ABF45212.1| NADH dehydrogenase subunit B [Deinococcus geothermalis DSM 11300]
          Length = 178

 Score =  185 bits (470), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 87/154 (56%), Positives = 117/154 (75%), Gaps = 2/154 (1%)

Query: 26  FSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA 85
           F R   E+  +G L +++++LV W R+ SL   TFGLACCA+EMM ++  R DL RFG  
Sbjct: 7   FDRDWQELESEGVLFSTLEKLVAWGRSNSLWPATFGLACCAIEMMSSTDGRNDLSRFGSE 66

Query: 86  P-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR 144
             RASPRQ+DVMIVAG L+ KMA  +RRVYDQMP+P++VISMG+CA+ GG ++ +Y+VV+
Sbjct: 67  VFRASPRQADVMIVAGRLSKKMAPIMRRVYDQMPDPKWVISMGACASSGGMFN-NYAVVQ 125

Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
             D +VPVD++VPGCPP  EALIY ++ LQKK+R
Sbjct: 126 NVDHVVPVDVFVPGCPPRPEALIYAVMQLQKKVR 159


>gi|86158994|ref|YP_465779.1| NADH dehydrogenase subunit B [Anaeromyxobacter dehalogenans 2CP-C]
 gi|123498614|sp|Q2IL09|NUOB2_ANADE RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName:
           Full=NADH dehydrogenase I subunit B 2; AltName:
           Full=NDH-1 subunit B 2
 gi|85775505|gb|ABC82342.1| NADH dehydrogenase subunit B [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 173

 Score =  185 bits (470), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 90/151 (59%), Positives = 110/151 (72%), Gaps = 4/151 (2%)

Query: 29  ISSEITHKGFLVTS-VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
           I  E+T    L TS +D L+  AR  SL ++TFGLACC +E+MQ   PR DL RFG  PR
Sbjct: 9   IGGEVT---LLHTSQLDNLINLARASSLYYLTFGLACCGIELMQTGGPRADLMRFGAIPR 65

Query: 88  ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCD 147
           ASPRQ+D MIVAGTLT KMA   R +YDQMPEP+YVISMGSC+N GG +   YSV +G D
Sbjct: 66  ASPRQADFMIVAGTLTYKMAERARLLYDQMPEPKYVISMGSCSNCGGLFQLGYSVCKGVD 125

Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           +++PVD+YVPGCPP  EAL  G+L LQ+ +R
Sbjct: 126 KVIPVDVYVPGCPPRPEALTEGLLRLQEIVR 156


>gi|46200221|ref|YP_005888.1| NADH-quinone oxidoreductase chain B [Thermus thermophilus HB27]
 gi|55980054|ref|YP_143351.1| NADH dehydrogenase subunit B [Thermus thermophilus HB8]
 gi|2499331|sp|Q56218|NQO6_THET8 RecName: Full=NADH-quinone oxidoreductase subunit 6; AltName:
           Full=NADH dehydrogenase I subunit 6; AltName: Full=NDH-1
           subunit 6
 gi|81405216|sp|Q72GC9|NUOB_THET2 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|90109659|pdb|2FUG|6 Chain 6, Crystal Structure Of The Hydrophilic Domain Of Respiratory
           Complex I From Thermus Thermophilus
 gi|90109667|pdb|2FUG|F Chain F, Crystal Structure Of The Hydrophilic Domain Of Respiratory
           Complex I From Thermus Thermophilus
 gi|90109675|pdb|2FUG|O Chain O, Crystal Structure Of The Hydrophilic Domain Of Respiratory
           Complex I From Thermus Thermophilus
 gi|90109683|pdb|2FUG|X Chain X, Crystal Structure Of The Hydrophilic Domain Of Respiratory
           Complex I From Thermus Thermophilus
 gi|258588593|pdb|3I9V|6 Chain 6, Crystal Structure Of The Hydrophilic Domain Of Respiratory
           Complex I From Thermus Thermophilus, Oxidized, 2 MolASU
 gi|258588601|pdb|3I9V|F Chain F, Crystal Structure Of The Hydrophilic Domain Of Respiratory
           Complex I From Thermus Thermophilus, Oxidized, 2 MolASU
 gi|258588609|pdb|3IAM|6 Chain 6, Crystal Structure Of The Hydrophilic Domain Of Respiratory
           Complex I From Thermus Thermophilus, Reduced, 2 MolASU,
           With Bound Nadh
 gi|258588617|pdb|3IAM|F Chain F, Crystal Structure Of The Hydrophilic Domain Of Respiratory
           Complex I From Thermus Thermophilus, Reduced, 2 MolASU,
           With Bound Nadh
 gi|258588625|pdb|3IAS|6 Chain 6, Crystal Structure Of The Hydrophilic Domain Of Respiratory
           Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
           Re-Refined To 3.15 Angstrom Resolution
 gi|258588633|pdb|3IAS|F Chain F, Crystal Structure Of The Hydrophilic Domain Of Respiratory
           Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
           Re-Refined To 3.15 Angstrom Resolution
 gi|258588641|pdb|3IAS|O Chain O, Crystal Structure Of The Hydrophilic Domain Of Respiratory
           Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
           Re-Refined To 3.15 Angstrom Resolution
 gi|258588649|pdb|3IAS|X Chain X, Crystal Structure Of The Hydrophilic Domain Of Respiratory
           Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
           Re-Refined To 3.15 Angstrom Resolution
 gi|296863609|pdb|3M9S|6 Chain 6, Crystal Structure Of Respiratory Complex I From Thermus
           Thermophilus
 gi|296863622|pdb|3M9S|F Chain F, Crystal Structure Of Respiratory Complex I From Thermus
           Thermophilus
 gi|1279862|gb|AAA97939.1| NADH dehydrogenase I, subunit NQO6 [Thermus thermophilus]
 gi|46197849|gb|AAS82261.1| NADH-quinone oxidoreductase chain B [Thermus thermophilus HB27]
 gi|55771467|dbj|BAD69908.1| NADH-quinone oxidoreductase chain 6 [Thermus thermophilus HB8]
          Length = 181

 Score =  185 bits (470), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 86/154 (55%), Positives = 117/154 (75%), Gaps = 2/154 (1%)

Query: 26  FSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA 85
           F R   E+  +G L T++++LV W R+ SL   TFGLACCA+EMM ++  R DL RFG  
Sbjct: 7   FERDVQELEREGILFTTLEKLVAWGRSNSLWPATFGLACCAIEMMASTDARNDLARFGSE 66

Query: 86  P-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR 144
             RASPRQ+DVMIVAG L+ KMA  +RRV++QMP+P++VISMG+CA+ GG ++ +Y++V+
Sbjct: 67  VFRASPRQADVMIVAGRLSKKMAPVMRRVWEQMPDPKWVISMGACASSGGMFN-NYAIVQ 125

Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
             D +VPVD+YVPGCPP  EALIY ++ LQKK+R
Sbjct: 126 NVDSVVPVDVYVPGCPPRPEALIYAVMQLQKKVR 159


>gi|206889652|ref|YP_002248950.1| NADH-quinone oxidoreductase chain b 2 [Thermodesulfovibrio
           yellowstonii DSM 11347]
 gi|238065044|sp|B5YL35|NUOB2_THEYD RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName:
           Full=NADH dehydrogenase I subunit B 2; AltName:
           Full=NDH-1 subunit B 2
 gi|206741590|gb|ACI20647.1| NADH-quinone oxidoreductase chain b 2 [Thermodesulfovibrio
           yellowstonii DSM 11347]
          Length = 174

 Score =  185 bits (469), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 85/147 (57%), Positives = 114/147 (77%), Gaps = 1/147 (0%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           I     ++T++D++V W R+ SL  +TFGLACCA+EMM A     DL+RFG   RASPRQ
Sbjct: 20  IKGSNVIITTLDKVVNWGRSNSLWPLTFGLACCAIEMMAAGASHLDLDRFGILFRASPRQ 79

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           +DV+I+AGT+T KMA  ++RVYDQMPEP+YVI+MGSCA  GG ++ +YS V+G D+ +PV
Sbjct: 80  ADVIIIAGTVTYKMAPIVKRVYDQMPEPKYVIAMGSCACTGGIFN-TYSTVQGADQFLPV 138

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179
           D+YVPGCPP  EAL+YG+L L++KI R
Sbjct: 139 DVYVPGCPPRPEALMYGVLKLKEKIMR 165


>gi|206602059|gb|EDZ38541.1| NADH dehydrogenase (ubiquinone), B subunit [Leptospirillum sp.
           Group II '5-way CG']
          Length = 178

 Score =  185 bits (469), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 89/142 (62%), Positives = 112/142 (78%), Gaps = 2/142 (1%)

Query: 39  LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMI 97
           L  +V++++ W+R  +L  MTFGLACCA+EMM A   R+D++RFG    RASPRQSD+MI
Sbjct: 18  LQDAVNEMLNWSRKSALWPMTFGLACCAIEMMGAVASRFDIDRFGAGVFRASPRQSDLMI 77

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGTLT KMA  +RR+YDQMPEPRYVI+MGSCA  G  Y  SYSVV+G DRI+PVD+YVP
Sbjct: 78  VAGTLTRKMAPVVRRIYDQMPEPRYVIAMGSCATSGNIYD-SYSVVQGVDRIIPVDVYVP 136

Query: 158 GCPPTAEALIYGILLLQKKIRR 179
           GCPP  EAL+ G++ LQ+KI +
Sbjct: 137 GCPPRPEALLDGLMKLQEKIMK 158


>gi|295697422|ref|YP_003590660.1| NADH-quinone oxidoreductase, B subunit [Bacillus tusciae DSM 2912]
 gi|295413024|gb|ADG07516.1| NADH-quinone oxidoreductase, B subunit [Bacillus tusciae DSM 2912]
          Length = 177

 Score =  184 bits (468), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 85/151 (56%), Positives = 115/151 (76%)

Query: 28  RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
           ++  +   +  ++T+++++  WAR+ S+  ++FGLACCA+EMM  S   YD +RFG   R
Sbjct: 13  QLEEKELERNVVLTTLEKVKAWARSNSMWPLSFGLACCAIEMMATSGSHYDADRFGVFFR 72

Query: 88  ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCD 147
           ASPRQ+D+MIV+GT+T KMA  LRR+YDQM EPR+VI+MGSCA  GG Y  SYSVV G D
Sbjct: 73  ASPRQADLMIVSGTVTKKMAPLLRRLYDQMAEPRWVIAMGSCATAGGPYVRSYSVVNGVD 132

Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           +IVPVD+Y+PGCPP+  ALIYG+  LQ+KIR
Sbjct: 133 QIVPVDVYIPGCPPSPVALIYGLNKLQEKIR 163


>gi|326800573|ref|YP_004318392.1| NAD(P)H-quinone oxidoreductase subunit K [Sphingobacterium sp. 21]
 gi|326551337|gb|ADZ79722.1| NAD(P)H-quinone oxidoreductase subunit K [Sphingobacterium sp. 21]
          Length = 163

 Score =  184 bits (468), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 87/149 (58%), Positives = 112/149 (75%), Gaps = 1/149 (0%)

Query: 30  SSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS 89
           +S  T  G +V  +D L+ WAR  S+  ++FG+ACCA+EMM A    YDL+R+G  PRAS
Sbjct: 3   TSTQTDSGIVVAKLDDLLNWARLSSMWPVSFGIACCAIEMMGAMAATYDLDRYGVFPRAS 62

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCAN-GGGYYHYSYSVVRGCDR 148
           PRQ+DV+I+AGT+T KMA  +R +Y+QMPEP+YVISMGSC+N GG Y+ + Y VV+G D+
Sbjct: 63  PRQADVIIIAGTVTFKMADRIRLLYEQMPEPKYVISMGSCSNCGGPYWQHGYHVVKGVDK 122

Query: 149 IVPVDIYVPGCPPTAEALIYGILLLQKKI 177
           I+PVDIYV GCPP  EALI   L LQKKI
Sbjct: 123 IIPVDIYVQGCPPRPEALIGAFLELQKKI 151


>gi|302035990|ref|YP_003796312.1| NADH-quinone oxidoreductase subunit B [Candidatus Nitrospira
           defluvii]
 gi|300604054|emb|CBK40386.1| NADH-quinone oxidoreductase, subunit B [Candidatus Nitrospira
           defluvii]
          Length = 159

 Score =  184 bits (467), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 89/144 (61%), Positives = 112/144 (77%), Gaps = 2/144 (1%)

Query: 37  GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95
             L T++D  V WAR  SL  MTFGLACCA+EM+ +   RYD++RFG    RASPRQSD+
Sbjct: 11  NILTTNLDAFVGWARKSSLWPMTFGLACCAIEMIASVSSRYDIDRFGAGVFRASPRQSDL 70

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
           MIVAGT++ KMA  +RR+YDQM EPRYVISMGSCA  G +Y+ SY+VV+G D+IVPVD+Y
Sbjct: 71  MIVAGTVSRKMAPVIRRIYDQMAEPRYVISMGSCATSGNHYN-SYAVVQGVDQIVPVDVY 129

Query: 156 VPGCPPTAEALIYGILLLQKKIRR 179
           + GCPP  EAL+ G+L LQ+KI+R
Sbjct: 130 IAGCPPRPEALLDGLLKLQEKIQR 153


>gi|257459165|ref|ZP_05624284.1| NADH-quinone oxidoreductase, B subunit [Campylobacter gracilis
           RM3268]
 gi|257443550|gb|EEV18674.1| NADH-quinone oxidoreductase, B subunit [Campylobacter gracilis
           RM3268]
          Length = 169

 Score =  184 bits (467), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 84/140 (60%), Positives = 110/140 (78%), Gaps = 1/140 (0%)

Query: 39  LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIV 98
           ++T+VD+L+ W R+ SL  MT+GLACCA+EMM A   R+D +RFG   RAS +QSDVMI+
Sbjct: 17  VLTTVDKLIAWGRSNSLWAMTYGLACCAIEMMAAGAGRFDFDRFGTIFRASAKQSDVMII 76

Query: 99  AGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPG 158
           AGTL+ K A   RR+YD MPEP++VISMGSCAN GG ++ +Y+ V+GCDRIVPVDIY+PG
Sbjct: 77  AGTLSKKHAEFTRRLYDAMPEPKWVISMGSCANTGGMFN-TYATVQGCDRIVPVDIYLPG 135

Query: 159 CPPTAEALIYGILLLQKKIR 178
           C P  E L + +++LQKKIR
Sbjct: 136 CAPRPETLQFAMMVLQKKIR 155


>gi|218295761|ref|ZP_03496557.1| NADH-quinone oxidoreductase, B subunit [Thermus aquaticus Y51MC23]
 gi|218243920|gb|EED10447.1| NADH-quinone oxidoreductase, B subunit [Thermus aquaticus Y51MC23]
          Length = 181

 Score =  184 bits (467), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 85/154 (55%), Positives = 117/154 (75%), Gaps = 2/154 (1%)

Query: 26  FSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA 85
           F +   E+  +G L T++++LV W R+ SL   TFGLACCA+EMM ++  R DL RFG  
Sbjct: 7   FEKDVQELEREGILFTTLEKLVAWGRSNSLWPATFGLACCAIEMMASTDARNDLARFGSE 66

Query: 86  P-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR 144
             RASPRQ+DVMIVAG L+ KMA  +RRV++QMP+P++VISMG+CA+ GG ++ +Y++V+
Sbjct: 67  VFRASPRQADVMIVAGRLSKKMAPVMRRVWEQMPDPKWVISMGACASSGGMFN-NYAIVQ 125

Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
             D +VPVD+YVPGCPP  EALIY ++ LQKK+R
Sbjct: 126 NVDSVVPVDVYVPGCPPRPEALIYAVMQLQKKVR 159


>gi|325104079|ref|YP_004273733.1| NADH dehydrogenase subunit B [Pedobacter saltans DSM 12145]
 gi|324972927|gb|ADY51911.1| NADH dehydrogenase subunit B [Pedobacter saltans DSM 12145]
          Length = 161

 Score =  184 bits (467), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 82/152 (53%), Positives = 114/152 (75%), Gaps = 1/152 (0%)

Query: 29  ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88
           +  ++ + G +VT +D L+ W+R  SL  ++FGLACCA+EMM +    +D +R G  PR 
Sbjct: 3   LEKQLENGGLIVTKLDDLLNWSRLSSLWPLSFGLACCAIEMMGSYSSNFDFDRLGVFPRP 62

Query: 89  SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCAN-GGGYYHYSYSVVRGCD 147
           SPRQ+DV+I+AGT+T KMA  ++R+Y+QMPEP+YVISMGSC+N GG Y+ + Y VV+G D
Sbjct: 63  SPRQADVIIIAGTVTFKMAERIKRLYEQMPEPKYVISMGSCSNCGGPYWEHGYHVVKGVD 122

Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           RI+PVD+YV GCPP  EALI  I+ LQ+KI +
Sbjct: 123 RIIPVDVYVQGCPPRPEALIGAIIELQQKIEK 154


>gi|305666195|ref|YP_003862482.1| NADH-quinone oxidoreductase chain B [Maribacter sp. HTCC2170]
 gi|88707694|gb|EAQ99935.1| NADH-quinone oxidoreductase chain B [Maribacter sp. HTCC2170]
          Length = 185

 Score =  184 bits (467), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 82/142 (57%), Positives = 112/142 (78%), Gaps = 2/142 (1%)

Query: 39  LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APRASPRQSDVMI 97
           +VTS+D+++ W R+ SL  + FG +CCA+EMMQ    R+D  RFGF   R SPRQ+D++I
Sbjct: 26  IVTSLDKIINWGRSNSLWSLYFGTSCCAIEMMQTGAARHDYSRFGFEVARPSPRQADLII 85

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCA-NGGGYYHYSYSVVRGCDRIVPVDIYV 156
           +AGT+ NKMA  LRR+YDQM EPRYVI+MG+CA +GG +++ +YSVV+G D ++PVD+YV
Sbjct: 86  IAGTIVNKMAPVLRRLYDQMAEPRYVIAMGACAISGGPFFYNTYSVVKGADHVIPVDVYV 145

Query: 157 PGCPPTAEALIYGILLLQKKIR 178
           PGCPP  EAL+ G+L+LQ KIR
Sbjct: 146 PGCPPRPEALLEGMLMLQDKIR 167


>gi|222824437|ref|YP_002576011.1| NADH-quinone oxidoreductase, B subunit [Campylobacter lari RM2100]
 gi|222539658|gb|ACM64759.1| NADH-quinone oxidoreductase, B subunit [Campylobacter lari RM2100]
          Length = 165

 Score =  184 bits (467), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 83/148 (56%), Positives = 114/148 (77%), Gaps = 1/148 (0%)

Query: 32  EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPR 91
           ++ +   ++T+VD+LV W R+ SL  +++GLACCA+EMM A   RYD +RFG   RASPR
Sbjct: 6   KMNNAPVVLTTVDKLVQWGRSNSLWALSYGLACCAIEMMAAGGARYDFDRFGTIFRASPR 65

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
           QS+VMI+AGTL+ K A   RR+YDQMP+P++VISMGSCAN GG ++ +YS V+G DRI+P
Sbjct: 66  QSEVMIIAGTLSKKHAEFTRRLYDQMPDPKWVISMGSCANTGGMFN-TYSTVQGVDRIIP 124

Query: 152 VDIYVPGCPPTAEALIYGILLLQKKIRR 179
           VDIYVPGC P  E   + +++LQK+IR+
Sbjct: 125 VDIYVPGCAPRPETFQFALMILQKRIRK 152


>gi|15606518|ref|NP_213898.1| NADH dehydrogenase I chain B [Aquifex aeolicus VF5]
 gi|6647653|sp|O67334|NUOB_AQUAE RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|2983736|gb|AAC07297.1| NADH dehydrogenase I chain B [Aquifex aeolicus VF5]
          Length = 179

 Score =  184 bits (467), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 83/152 (54%), Positives = 114/152 (75%), Gaps = 1/152 (0%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           I   GF+ T+V++L+ W R  SL  +T GLACCA+EMM  +  R+DL+R G   RASPRQ
Sbjct: 4   INSNGFVTTTVEELLRWGRRNSLWPVTIGLACCAIEMMHTAASRFDLDRLGVIFRASPRQ 63

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           +DV+IVAGT+ NK+A  L+ ++DQMP+P++ ISMG CA+ GG +  +YS ++G DRI+PV
Sbjct: 64  ADVLIVAGTVVNKVAPMLKLIWDQMPDPKWCISMGGCASAGGPFP-TYSTLQGVDRIIPV 122

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           D+Y+PGCPPT + LIYGIL LQ+KI+  G  K
Sbjct: 123 DVYIPGCPPTPQGLIYGILQLQRKIKEQGITK 154


>gi|224437358|ref|ZP_03658330.1| NADH dehydrogenase subunit B [Helicobacter cinaedi CCUG 18818]
 gi|313143821|ref|ZP_07806014.1| NADH dehydrogenase subunit B [Helicobacter cinaedi CCUG 18818]
 gi|313128852|gb|EFR46469.1| NADH dehydrogenase subunit B [Helicobacter cinaedi CCUG 18818]
          Length = 169

 Score =  184 bits (466), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 82/140 (58%), Positives = 112/140 (80%), Gaps = 1/140 (0%)

Query: 40  VTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVA 99
           ++SVD+L+ W R+ SL  +T+GLACCA+EMM     R+DL+RFG   RASPRQ+D+MI++
Sbjct: 18  LSSVDKLLNWGRSNSLWGLTYGLACCAIEMMATGGSRFDLDRFGTIFRASPRQADLMIIS 77

Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGC 159
           GT+T K A  +RR+YDQMPEP++VISMGSCAN GG ++ +YS V+G DRI+PVDIY+PGC
Sbjct: 78  GTVTKKHAEFVRRLYDQMPEPKWVISMGSCANTGGMFN-TYSTVQGVDRIIPVDIYLPGC 136

Query: 160 PPTAEALIYGILLLQKKIRR 179
            P  E L Y +++LQ+KIR+
Sbjct: 137 APRPETLQYAVMVLQQKIRK 156


>gi|251773166|gb|EES53719.1| NADH dehydrogenase (ubiquinone), B subunit [Leptospirillum
           ferrodiazotrophum]
          Length = 165

 Score =  184 bits (466), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 88/140 (62%), Positives = 110/140 (78%), Gaps = 2/140 (1%)

Query: 39  LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMI 97
           L  +V+ +V W+R  +L  MTFGLACCA+EMM A   R+D++RFG    RASPRQSD+MI
Sbjct: 18  LQDAVNDIVNWSRKSALWPMTFGLACCAIEMMGAVASRFDIDRFGAGVFRASPRQSDLMI 77

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGTLT KMA  +R++YDQMPEPRYVI+MGSCA  G  Y  SYSVV+G DR++PVD+YVP
Sbjct: 78  VAGTLTRKMAPVVRKIYDQMPEPRYVIAMGSCATSGNIYD-SYSVVQGVDRLIPVDVYVP 136

Query: 158 GCPPTAEALIYGILLLQKKI 177
           GCPP  EAL+ G++ LQ+KI
Sbjct: 137 GCPPRPEALLDGLIKLQEKI 156


>gi|315453251|ref|YP_004073521.1| NADH-quinone oxidoreductase subunit B [Helicobacter felis ATCC
           49179]
 gi|315132303|emb|CBY82931.1| NADH-quinone oxidoreductase subunit B [Helicobacter felis ATCC
           49179]
          Length = 169

 Score =  184 bits (466), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 83/140 (59%), Positives = 109/140 (77%), Gaps = 1/140 (0%)

Query: 40  VTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVA 99
           +T++D+L+ W R+ SL  +T+GLACCA+EMM     R+D +RFG   RASPRQSDVMI+A
Sbjct: 18  LTTLDKLLNWGRSNSLWPLTYGLACCAIEMMATGGSRFDFDRFGTIFRASPRQSDVMIIA 77

Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGC 159
           GTLT K A   RR+YDQMPEP++VISMGSCAN GG ++ +Y+ V+G DR++PVDIY+PGC
Sbjct: 78  GTLTKKHAEFTRRLYDQMPEPKWVISMGSCANTGGMFN-TYATVQGVDRVIPVDIYLPGC 136

Query: 160 PPTAEALIYGILLLQKKIRR 179
            P  E L Y +++LQ KIRR
Sbjct: 137 APRPETLQYALMVLQDKIRR 156


>gi|258592356|emb|CBE68665.1| NADH-quinone oxidoreductase subunit 6 (NADH dehydrogenase I chain
           6) (NDH-1 subunit 6) [NC10 bacterium 'Dutch sediment']
          Length = 181

 Score =  183 bits (465), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 85/146 (58%), Positives = 114/146 (78%), Gaps = 2/146 (1%)

Query: 35  HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQS 93
            +G L+T++D LV WAR  S+   +FGLACCA+EMM     R+DL RFG    R SPRQS
Sbjct: 20  ERGLLLTTLDSLVNWARKSSIWPASFGLACCAIEMMATGASRFDLARFGAEVFRGSPRQS 79

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD 153
           D+MIVAG ++ KMA  LRR+YDQMPEP++VI+MG+CA+ GG ++ +Y++V+G D+IVPVD
Sbjct: 80  DLMIVAGRVSRKMAPVLRRIYDQMPEPKWVIAMGACASCGGIFN-TYTIVQGVDQIVPVD 138

Query: 154 IYVPGCPPTAEALIYGILLLQKKIRR 179
           +YVPGCPP  E LI+GI+LLQ+KI +
Sbjct: 139 VYVPGCPPRPEQLIHGIMLLQEKIAK 164


>gi|152993807|ref|YP_001359528.1| NADH dehydrogenase subunit B [Sulfurovum sp. NBC37-1]
 gi|238065218|sp|A6QCG2|NUOB_SULNB RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|151425668|dbj|BAF73171.1| NADH-quinone oxidoreductase, chain B [Sulfurovum sp. NBC37-1]
          Length = 172

 Score =  183 bits (465), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 84/140 (60%), Positives = 109/140 (77%), Gaps = 1/140 (0%)

Query: 40  VTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVA 99
           +TSVD+LV W R+ SL  +T+GLACCA+EMM +   RYD +R G   RASPRQ+DVMI+A
Sbjct: 18  LTSVDKLVNWGRSNSLWPLTYGLACCAIEMMASGASRYDFDRMGTIFRASPRQADVMILA 77

Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGC 159
           GTL+ K +   RR+YDQM EP++VISMGSCAN GG ++ +Y+ V+G DRI+PVDIY+PGC
Sbjct: 78  GTLSKKHSEFARRLYDQMTEPKWVISMGSCANTGGMFN-TYATVQGVDRIIPVDIYLPGC 136

Query: 160 PPTAEALIYGILLLQKKIRR 179
            P  E L Y +++LQKKIRR
Sbjct: 137 APRPETLQYALMMLQKKIRR 156


>gi|57168317|ref|ZP_00367451.1| NADH2 dehydrogenase (ubiquinone) I chain B Cj1578c [Campylobacter
           coli RM2228]
 gi|153952278|ref|YP_001398860.1| NADH dehydrogenase subunit B [Campylobacter jejuni subsp. doylei
           269.97]
 gi|157415794|ref|YP_001483050.1| NADH dehydrogenase subunit B [Campylobacter jejuni subsp. jejuni
           81116]
 gi|305432374|ref|ZP_07401536.1| NADH-quinone oxidoreductase subunit B [Campylobacter coli JV20]
 gi|238055278|sp|A8FNN6|NUOB_CAMJ8 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|254767792|sp|A7H5T0|NUOB_CAMJD RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|57020125|gb|EAL56799.1| NADH2 dehydrogenase (ubiquinone) I chain B Cj1578c [Campylobacter
           coli RM2228]
 gi|152939724|gb|ABS44465.1| NADH-quinone oxidoreductase, B subunit [Campylobacter jejuni subsp.
           doylei 269.97]
 gi|157386758|gb|ABV53073.1| NADH dehydrogenase I chain B [Campylobacter jejuni subsp. jejuni
           81116]
 gi|304444413|gb|EFM37064.1| NADH-quinone oxidoreductase subunit B [Campylobacter coli JV20]
 gi|307748433|gb|ADN91703.1| NADH-quinone oxidoreductase subunit B [Campylobacter jejuni subsp.
           jejuni M1]
 gi|315929523|gb|EFV08716.1| NADH-quinone oxidoreductase, B subunit [Campylobacter jejuni subsp.
           jejuni 305]
 gi|315931258|gb|EFV10228.1| NADH-quinone oxidoreductase, B subunit [Campylobacter jejuni subsp.
           jejuni 327]
          Length = 167

 Score =  183 bits (465), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 84/141 (59%), Positives = 110/141 (78%), Gaps = 1/141 (0%)

Query: 39  LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIV 98
           ++TSVD+LV W R+ SL  +++GLACCA+EMM A   RYD +RFG   RASPR S+VMI+
Sbjct: 15  VLTSVDKLVQWGRSNSLWALSYGLACCAIEMMAAGGSRYDFDRFGTIFRASPRHSEVMII 74

Query: 99  AGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPG 158
           AGTL  K A   RR+YDQMP+P++VISMGSCAN GG ++ +YS V+G DRI+PVDIYVPG
Sbjct: 75  AGTLCKKHAEFTRRLYDQMPDPKWVISMGSCANTGGMFN-TYSTVQGVDRIIPVDIYVPG 133

Query: 159 CPPTAEALIYGILLLQKKIRR 179
           C P  E+  + +++LQKKIR+
Sbjct: 134 CAPRPESFQFALMILQKKIRK 154


>gi|57238591|ref|YP_179722.1| NADH dehydrogenase subunit B [Campylobacter jejuni RM1221]
 gi|148925724|ref|ZP_01809412.1| NADH dehydrogenase I chain B [Campylobacter jejuni subsp. jejuni
           CG8486]
 gi|205355593|ref|ZP_03222363.1| NADH dehydrogenase I chain B [Campylobacter jejuni subsp. jejuni
           CG8421]
 gi|81557394|sp|Q5HSL3|NUOB_CAMJR RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|57167395|gb|AAW36174.1| NADH-quinone oxidoreductase, B subunit [Campylobacter jejuni
           RM1221]
 gi|145845734|gb|EDK22825.1| NADH dehydrogenase I chain B [Campylobacter jejuni subsp. jejuni
           CG8486]
 gi|205346370|gb|EDZ33003.1| NADH dehydrogenase I chain B [Campylobacter jejuni subsp. jejuni
           CG8421]
 gi|315059028|gb|ADT73357.1| NADH-ubiquinone oxidoreductase chain B [Campylobacter jejuni subsp.
           jejuni S3]
          Length = 167

 Score =  183 bits (465), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 84/141 (59%), Positives = 110/141 (78%), Gaps = 1/141 (0%)

Query: 39  LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIV 98
           ++TSVD+LV W R+ SL  +++GLACCA+EMM A   RYD +RFG   RASPR S+VMI+
Sbjct: 15  VLTSVDKLVQWGRSNSLWALSYGLACCAIEMMAAGGSRYDFDRFGTIFRASPRHSEVMII 74

Query: 99  AGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPG 158
           AGTL  K A   RR+YDQMP+P++VISMGSCAN GG ++ +YS V+G DRI+PVDIYVPG
Sbjct: 75  AGTLCKKHAEFTRRLYDQMPDPKWVISMGSCANTGGMFN-TYSTVQGVDRIIPVDIYVPG 133

Query: 159 CPPTAEALIYGILLLQKKIRR 179
           C P  E+  + +++LQKKIR+
Sbjct: 134 CAPRPESFQFALMILQKKIRK 154


>gi|86149321|ref|ZP_01067552.1| NADH-quinone oxidoreductase, B subunit [Campylobacter jejuni subsp.
           jejuni CF93-6]
 gi|86152325|ref|ZP_01070536.1| NADH-quinone oxidoreductase, B subunit [Campylobacter jejuni subsp.
           jejuni 260.94]
 gi|86152543|ref|ZP_01070748.1| nadh-quinone oxidoreductase chain 6 [Campylobacter jejuni subsp.
           jejuni HB93-13]
 gi|88596514|ref|ZP_01099751.1| NADH-quinone oxidoreductase, B subunit [Campylobacter jejuni subsp.
           jejuni 84-25]
 gi|121613264|ref|YP_001001218.1| NADH dehydrogenase subunit B [Campylobacter jejuni subsp. jejuni
           81-176]
 gi|167006111|ref|ZP_02271869.1| NADH dehydrogenase subunit B [Campylobacter jejuni subsp. jejuni
           81-176]
 gi|218563167|ref|YP_002344947.1| NADH dehydrogenase subunit B [Campylobacter jejuni subsp. jejuni
           NCTC 11168]
 gi|283956950|ref|ZP_06374422.1| NADH dehydrogenase I chain B [Campylobacter jejuni subsp. jejuni
           1336]
 gi|315124988|ref|YP_004066992.1| NADH dehydrogenase beta subunit [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
 gi|123336622|sp|Q0P850|NUOB_CAMJE RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|238055279|sp|A1W1H7|NUOB_CAMJJ RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|85840103|gb|EAQ57361.1| NADH-quinone oxidoreductase, B subunit [Campylobacter jejuni subsp.
           jejuni CF93-6]
 gi|85840814|gb|EAQ58065.1| NADH-quinone oxidoreductase, B subunit [Campylobacter jejuni subsp.
           jejuni 260.94]
 gi|85843428|gb|EAQ60638.1| nadh-quinone oxidoreductase chain 6 [Campylobacter jejuni subsp.
           jejuni HB93-13]
 gi|87249799|gb|EAQ72758.1| NADH-quinone oxidoreductase, B subunit [Campylobacter jejuni subsp.
           jejuni 81-176]
 gi|88191355|gb|EAQ95327.1| NADH-quinone oxidoreductase, B subunit [Campylobacter jejuni subsp.
           jejuni 84-25]
 gi|112360874|emb|CAL35675.1| NADH dehydrogenase I chain B [Campylobacter jejuni subsp. jejuni
           NCTC 11168]
 gi|283791451|gb|EFC30248.1| NADH dehydrogenase I chain B [Campylobacter jejuni subsp. jejuni
           1336]
 gi|284926773|gb|ADC29125.1| NADH dehydrogenase I chain B [Campylobacter jejuni subsp. jejuni
           IA3902]
 gi|315018710|gb|ADT66803.1| NADH dehydrogenase beta subunit [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
 gi|315927676|gb|EFV07007.1| NADH-quinone oxidoreductase, B subunit [Campylobacter jejuni subsp.
           jejuni DFVF1099]
          Length = 167

 Score =  183 bits (465), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 84/141 (59%), Positives = 110/141 (78%), Gaps = 1/141 (0%)

Query: 39  LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIV 98
           ++TSVD+LV W R+ SL  +++GLACCA+EMM A   RYD +RFG   RASPR S+VMI+
Sbjct: 15  VLTSVDKLVQWGRSNSLWALSYGLACCAIEMMAAGGSRYDFDRFGTIFRASPRHSEVMII 74

Query: 99  AGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPG 158
           AGTL  K A   RR+YDQMP+P++VISMGSCAN GG ++ +YS V+G DRI+PVDIYVPG
Sbjct: 75  AGTLCKKHAEFTRRLYDQMPDPKWVISMGSCANTGGMFN-TYSTVQGVDRIIPVDIYVPG 133

Query: 159 CPPTAEALIYGILLLQKKIRR 179
           C P  E+  + +++LQKKIR+
Sbjct: 134 CAPRPESFQFALMILQKKIRK 154


>gi|91065096|gb|ABE03928.1| NuoB [Theonella swinhoei bacterial symbiont clone pSW1H8]
          Length = 178

 Score =  183 bits (464), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 85/154 (55%), Positives = 116/154 (75%), Gaps = 2/154 (1%)

Query: 26  FSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA 85
           F R   E+   G L +++ +LV W R+ SL   TFGLACCA+EMMQ++  R DL RFG  
Sbjct: 7   FERDVQELETDGILFSTLGKLVAWGRSNSLWPATFGLACCAIEMMQSTNSRNDLARFGSE 66

Query: 86  P-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR 144
             RASPRQ+DVMIVAG L+ KMA  +RRVY+QMP+P++VISMG+CA+ GG ++ +Y++V+
Sbjct: 67  VFRASPRQADVMIVAGRLSKKMAPVMRRVYEQMPDPKWVISMGACASSGGMFN-NYAIVQ 125

Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
             D +VPVDI+VPGCPP  EAL+Y ++ LQK++R
Sbjct: 126 NVDSVVPVDIFVPGCPPRPEALVYAVMQLQKRVR 159


>gi|313679586|ref|YP_004057325.1| NADH dehydrogenase subunit b [Oceanithermus profundus DSM 14977]
 gi|313152301|gb|ADR36152.1| NADH dehydrogenase subunit B [Oceanithermus profundus DSM 14977]
          Length = 179

 Score =  183 bits (464), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 87/154 (56%), Positives = 116/154 (75%), Gaps = 2/154 (1%)

Query: 26  FSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA 85
           F R   E+  +G L T++++LV W R+ SL  +TFGLACCA+EMM +S  R DL RFG  
Sbjct: 7   FERDVQELEREGILFTTLEKLVAWGRSNSLWPVTFGLACCAIEMMASSNARNDLSRFGSE 66

Query: 86  P-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR 144
             RASPRQ+DVMIVAG L+ KMA  +RRVYDQM +P++VI+MG+CA  GG ++ +Y++V+
Sbjct: 67  VFRASPRQADVMIVAGRLSKKMAPVMRRVYDQMGDPKWVIAMGACAASGGMFN-NYAIVQ 125

Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
             + +VPVD+YVPGCPP  EALIY ++ LQKKIR
Sbjct: 126 SVESVVPVDVYVPGCPPRPEALIYAVMQLQKKIR 159


>gi|190893214|ref|YP_001979756.1| NADH-ubiquinone oxidoreductase, chain B [Rhizobium etli CIAT 652]
 gi|238065034|sp|B3PY57|NUOB2_RHIE6 RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName:
           Full=NADH dehydrogenase I subunit B 2; AltName:
           Full=NDH-1 subunit B 2
 gi|190698493|gb|ACE92578.1| NADH-ubiquinone oxidoreductase protein, chain B [Rhizobium etli
           CIAT 652]
          Length = 167

 Score =  183 bits (464), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 83/141 (58%), Positives = 111/141 (78%), Gaps = 1/141 (0%)

Query: 39  LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIV 98
           L T+ D ++ W+R+ +L   TFG+ACCA+EM+ A   RYDL+RFG   R SPRQSDVMI+
Sbjct: 13  LFTTADSIINWSRSSALWPETFGIACCAIEMISAGCARYDLDRFGVVFRPSPRQSDVMII 72

Query: 99  AGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPG 158
           AGT+T K A  +RR+YDQMPEPR+VI+MG+CA  GG Y+ +Y+VV+G +  VPVD++VPG
Sbjct: 73  AGTVTRKFAPVVRRLYDQMPEPRWVIAMGTCAISGGVYN-TYAVVQGSETFVPVDVHVPG 131

Query: 159 CPPTAEALIYGILLLQKKIRR 179
           CPP  EAL++G LLLQ+KI+R
Sbjct: 132 CPPRPEALMHGFLLLQEKIKR 152


>gi|296274502|ref|YP_003657133.1| NADH-quinone oxidoreductase subunit B [Arcobacter nitrofigilis DSM
           7299]
 gi|296098676|gb|ADG94626.1| NADH-quinone oxidoreductase, B subunit [Arcobacter nitrofigilis DSM
           7299]
          Length = 169

 Score =  183 bits (464), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 82/140 (58%), Positives = 112/140 (80%), Gaps = 1/140 (0%)

Query: 40  VTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVA 99
           +++VD++V + R+ SL  +T+GLACCA+EMM +   RYD +RFG   RASPRQ+DV+IVA
Sbjct: 18  LSTVDKIVNFGRSNSLWPLTYGLACCAIEMMASGASRYDFDRFGTIFRASPRQADVLIVA 77

Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGC 159
           GTLT K A  +RR+YDQMP+P++VISMGSCAN GG ++ +Y+ V+G DR++PVDIY+PGC
Sbjct: 78  GTLTKKHAEYMRRLYDQMPDPKWVISMGSCANTGGMFN-TYATVQGVDRVIPVDIYLPGC 136

Query: 160 PPTAEALIYGILLLQKKIRR 179
            P  E L Y +++LQKKIRR
Sbjct: 137 APRPETLQYALMMLQKKIRR 156


>gi|322378681|ref|ZP_08053114.1| Donor-ubiquinone reductase I [Helicobacter suis HS1]
 gi|322380176|ref|ZP_08054411.1| NADH dehydrogenase subunit B [Helicobacter suis HS5]
 gi|321147391|gb|EFX42056.1| NADH dehydrogenase subunit B [Helicobacter suis HS5]
 gi|321148898|gb|EFX43365.1| Donor-ubiquinone reductase I [Helicobacter suis HS1]
          Length = 196

 Score =  183 bits (464), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 83/140 (59%), Positives = 109/140 (77%), Gaps = 1/140 (0%)

Query: 40  VTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVA 99
           ++S+D+L+ W R+ SL  +T+GLACCA+EMM     R+D +RFG   RASPRQSDVMI+A
Sbjct: 45  LSSLDRLLNWGRSNSLWPLTYGLACCAIEMMATGGSRFDFDRFGTIFRASPRQSDVMIIA 104

Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGC 159
           GTLT K A   RR+YDQMPEP++VISMGSCAN GG ++ +Y+ V+G DR++PVDIY+PGC
Sbjct: 105 GTLTKKHAEFTRRLYDQMPEPKWVISMGSCANTGGMFN-TYATVQGVDRVIPVDIYLPGC 163

Query: 160 PPTAEALIYGILLLQKKIRR 179
            P  E L Y +++LQ KIRR
Sbjct: 164 APRPETLQYALMVLQDKIRR 183


>gi|197121687|ref|YP_002133638.1| NADH dehydrogenase subunit B [Anaeromyxobacter sp. K]
 gi|220916483|ref|YP_002491787.1| NADH-quinone oxidoreductase, B subunit [Anaeromyxobacter
           dehalogenans 2CP-1]
 gi|238065005|sp|B4UIA4|NUOB1_ANASK RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName:
           Full=NADH dehydrogenase I subunit B 1; AltName:
           Full=NDH-1 subunit B 1
 gi|196171536|gb|ACG72509.1| NADH-quinone oxidoreductase, B subunit [Anaeromyxobacter sp. K]
 gi|219954337|gb|ACL64721.1| NADH-quinone oxidoreductase, B subunit [Anaeromyxobacter
           dehalogenans 2CP-1]
          Length = 173

 Score =  183 bits (464), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 83/139 (59%), Positives = 104/139 (74%)

Query: 40  VTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVA 99
            + +D L+  AR  SL ++TFGLACC +E+MQ   PR D+ RFG  PRASPRQ+D MIVA
Sbjct: 18  TSQLDNLINLARASSLYYLTFGLACCGIELMQTGGPRADVMRFGAIPRASPRQADFMIVA 77

Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGC 159
           GTLT KMA   R +YDQMPEP+YVISMGSC+N GG +   YSV +G D+++PVD+YVPGC
Sbjct: 78  GTLTYKMAERARLLYDQMPEPKYVISMGSCSNCGGLFQLGYSVCKGVDKVIPVDVYVPGC 137

Query: 160 PPTAEALIYGILLLQKKIR 178
           PP  EAL  G+L LQ+ +R
Sbjct: 138 PPRPEALTEGLLRLQEIVR 156


>gi|307637933|gb|ADN80383.1| NADH-ubiquinone oxidoreductase chain B [Helicobacter pylori 908]
          Length = 159

 Score =  182 bits (463), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 84/146 (57%), Positives = 112/146 (76%), Gaps = 1/146 (0%)

Query: 39  LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIV 98
           +++++D+L+ W R+ SL  +T+GLA CA+EMM     R+D +RFG   RASPRQSDVMI+
Sbjct: 7   ILSTLDKLLNWGRSNSLWPLTYGLAWCAIEMMATGGSRFDFDRFGTIFRASPRQSDVMII 66

Query: 99  AGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPG 158
           AGTLT K A  +RR+YDQMPEP++VISMGSCAN GG ++ +Y+ V+G DRIVPVDIY+PG
Sbjct: 67  AGTLTKKHAEFMRRLYDQMPEPKWVISMGSCANTGGMFN-TYATVQGADRIVPVDIYLPG 125

Query: 159 CPPTAEALIYGILLLQKKIRRVGNVK 184
           C P  E L Y +++LQ KIRR   +K
Sbjct: 126 CAPRPETLQYALMVLQDKIRRSKAIK 151


>gi|237751580|ref|ZP_04582060.1| NADH dehydrogenase subunit I B [Helicobacter bilis ATCC 43879]
 gi|229372946|gb|EEO23337.1| NADH dehydrogenase subunit I B [Helicobacter bilis ATCC 43879]
          Length = 169

 Score =  182 bits (463), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 86/155 (55%), Positives = 115/155 (74%), Gaps = 3/155 (1%)

Query: 32  EITHKGFLVT--SVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS 89
           E++ +G  V   SVD+++ W R+ SL  +T+GLACCA+EMM     R+D +RFG   RAS
Sbjct: 8   ELSPRGMPVALGSVDKILNWGRSNSLWPLTYGLACCAIEMMATGGSRFDFDRFGIIFRAS 67

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQSDVMI+AGTLT K A   RR+YDQMPEP++V+SMGSCAN GG ++ +Y+ V+G DRI
Sbjct: 68  PRQSDVMIIAGTLTKKHAEFTRRLYDQMPEPKWVVSMGSCANTGGMFN-TYATVQGVDRI 126

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           +PVDIY+PGC P  E L Y +++LQ+KIR    +K
Sbjct: 127 IPVDIYLPGCAPRPETLQYAMMVLQQKIRSEKAIK 161


>gi|327191021|gb|EGE58075.1| NADH-ubiquinone oxidoreductase protein, chain B [Rhizobium etli
           CNPAF512]
          Length = 167

 Score =  182 bits (463), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 83/141 (58%), Positives = 111/141 (78%), Gaps = 1/141 (0%)

Query: 39  LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIV 98
           L T+ D ++ W+R+ +L   TFG+ACCA+EM+ A   RYDL+RFG   R SPRQSDVMI+
Sbjct: 13  LFTTADSVINWSRSSALWPETFGIACCAIEMISAGCARYDLDRFGVVFRPSPRQSDVMII 72

Query: 99  AGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPG 158
           AGT+T K A  +RR+YDQMPEPR+VI+MG+CA  GG Y+ +Y+VV+G +  VPVD++VPG
Sbjct: 73  AGTVTRKFAPVVRRLYDQMPEPRWVIAMGTCAISGGVYN-TYAVVQGSETFVPVDVHVPG 131

Query: 159 CPPTAEALIYGILLLQKKIRR 179
           CPP  EAL++G LLLQ+KI+R
Sbjct: 132 CPPRPEALMHGFLLLQEKIKR 152


>gi|283953809|ref|ZP_06371340.1| NADH-quinone oxidoreductase, B subunit [Campylobacter jejuni subsp.
           jejuni 414]
 gi|283794850|gb|EFC33588.1| NADH-quinone oxidoreductase, B subunit [Campylobacter jejuni subsp.
           jejuni 414]
          Length = 167

 Score =  182 bits (463), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 83/141 (58%), Positives = 110/141 (78%), Gaps = 1/141 (0%)

Query: 39  LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIV 98
           ++TSVD+LV W R+ SL  +++GLACCA+EMM A   RYD +RFG   RASPR S+VMI+
Sbjct: 15  VLTSVDKLVQWGRSNSLWALSYGLACCAIEMMAAGGSRYDFDRFGTIFRASPRHSEVMII 74

Query: 99  AGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPG 158
           AGTL  K A   RR+YDQMP+P++V+SMGSCAN GG ++ +YS V+G DRI+PVDIYVPG
Sbjct: 75  AGTLCKKHAEFTRRLYDQMPDPKWVVSMGSCANTGGMFN-TYSTVQGVDRIIPVDIYVPG 133

Query: 159 CPPTAEALIYGILLLQKKIRR 179
           C P  E+  + +++LQKKIR+
Sbjct: 134 CAPRPESFQFALMILQKKIRK 154


>gi|302035622|ref|YP_003795944.1| NADH-quinone oxidoreductase subunit B [Candidatus Nitrospira
           defluvii]
 gi|300603686|emb|CBK40017.1| NADH-quinone oxidoreductase, subunit B [Candidatus Nitrospira
           defluvii]
          Length = 175

 Score =  182 bits (463), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 89/140 (63%), Positives = 109/140 (77%), Gaps = 2/140 (1%)

Query: 39  LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMI 97
           +  +V++ V WAR GSL  MTFGLACCA+EM+ A   RYD++R+G    RASPRQSD+MI
Sbjct: 18  ITLTVEKAVNWARKGSLWPMTFGLACCAIEMIAAVSSRYDMDRYGAGVFRASPRQSDLMI 77

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGT+  +MA  +R++YDQMPEP+YVI+MGSCA  G  Y  SYSVV+G DR VPVDIYVP
Sbjct: 78  VAGTVCRRMAPVIRKIYDQMPEPKYVIAMGSCATSGNIYD-SYSVVQGVDRFVPVDIYVP 136

Query: 158 GCPPTAEALIYGILLLQKKI 177
           GCPPT EAL  GIL LQ++I
Sbjct: 137 GCPPTPEALFDGILKLQERI 156


>gi|86359327|ref|YP_471219.1| NADH-ubiquinone oxidoreductase chain B protein [Rhizobium etli CFN
           42]
 gi|123510666|sp|Q2K3U4|NUOB3_RHIEC RecName: Full=NADH-quinone oxidoreductase subunit B 3; AltName:
           Full=NADH dehydrogenase I subunit B 3; AltName:
           Full=NDH-1 subunit B 3
 gi|86283429|gb|ABC92492.1| NADH-ubiquinone oxidoreductase chain B protein [Rhizobium etli CFN
           42]
          Length = 167

 Score =  182 bits (462), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 83/141 (58%), Positives = 111/141 (78%), Gaps = 1/141 (0%)

Query: 39  LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIV 98
           L T+ D ++ W+R+ +L   TFG+ACCA+EM+ A   RYDL+RFG   R SPRQSDVMI+
Sbjct: 13  LFTTADSVINWSRSSALWPETFGIACCAIEMISAGCARYDLDRFGVVFRPSPRQSDVMII 72

Query: 99  AGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPG 158
           AGT+T K A  +RR+YDQMPEPR+VI+MG+CA  GG Y+ +Y+VV+G +  VPVD++VPG
Sbjct: 73  AGTVTRKFAPVVRRLYDQMPEPRWVIAMGTCAISGGVYN-TYAVVQGSETFVPVDVHVPG 131

Query: 159 CPPTAEALIYGILLLQKKIRR 179
           CPP  EAL++G LLLQ+KI+R
Sbjct: 132 CPPRPEALMHGFLLLQEKIKR 152


>gi|218460106|ref|ZP_03500197.1| NADH-ubiquinone oxidoreductase protein, chain B [Rhizobium etli Kim
           5]
          Length = 167

 Score =  182 bits (462), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 83/141 (58%), Positives = 111/141 (78%), Gaps = 1/141 (0%)

Query: 39  LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIV 98
           L T+ D +++W+R  +L   TFG+ACCA+EM+ A   RYDL+RFG   R SPRQSDVMI+
Sbjct: 13  LFTTADSIISWSRRSALWPETFGIACCAIEMISAGCARYDLDRFGVVFRPSPRQSDVMII 72

Query: 99  AGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPG 158
           AGT+T K A  +RR+YDQMPEPR+VI+MG+CA  GG Y+ +Y+VV+G +  VPVD++VPG
Sbjct: 73  AGTVTRKFAPVVRRLYDQMPEPRWVIAMGTCAISGGVYN-TYAVVQGSETFVPVDVHVPG 131

Query: 159 CPPTAEALIYGILLLQKKIRR 179
           CPP  EAL++G LLLQ+KI+R
Sbjct: 132 CPPRPEALMHGFLLLQEKIKR 152


>gi|313681394|ref|YP_004059132.1| NADH dehydrogenase subunit b [Sulfuricurvum kujiense DSM 16994]
 gi|313154254|gb|ADR32932.1| NADH dehydrogenase subunit B [Sulfuricurvum kujiense DSM 16994]
          Length = 169

 Score =  182 bits (461), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 80/140 (57%), Positives = 110/140 (78%), Gaps = 1/140 (0%)

Query: 40  VTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVA 99
           +T++D++V W R+ SL  +T+GLACC +EMM +   RYD +RFG   RASPRQ+++M+VA
Sbjct: 18  LTTIDKVVNWGRSNSLWALTYGLACCGIEMMASGASRYDFDRFGTIFRASPRQAELMVVA 77

Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGC 159
           GTLT K A  +RR+YDQM EP++VISMGSCAN GG ++ +Y+ V+G DR++PVD+Y+PGC
Sbjct: 78  GTLTKKHAEFIRRLYDQMTEPKWVISMGSCANTGGMFN-TYATVQGVDRVIPVDLYLPGC 136

Query: 160 PPTAEALIYGILLLQKKIRR 179
            P  E L Y +LLLQ+KIRR
Sbjct: 137 APRPETLQYAVLLLQQKIRR 156


>gi|296122635|ref|YP_003630413.1| NADH-quinone oxidoreductase, subunit beta [Planctomyces limnophilus
           DSM 3776]
 gi|296014975|gb|ADG68214.1| NADH-quinone oxidoreductase, B subunit [Planctomyces limnophilus
           DSM 3776]
          Length = 225

 Score =  181 bits (460), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 82/146 (56%), Positives = 114/146 (78%), Gaps = 2/146 (1%)

Query: 35  HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APRASPRQS 93
            +  +VT+++Q + W +  S+  +TFG+ACCA+EMM   M +YDL+RFG  A RA+PRQ+
Sbjct: 33  EENLIVTTLEQAMNWGQLSSVWPLTFGIACCAMEMMATGMSKYDLDRFGSGAFRATPRQA 92

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGG-YYHYSYSVVRGCDRIVPV 152
           D+MIVAGT+T KMAS +RR+YDQMP+P+YVI+MG+C  GGG Y+ Y Y VV+G D +VPV
Sbjct: 93  DLMIVAGTVTYKMASRIRRLYDQMPDPKYVIAMGACTIGGGPYFKYGYHVVKGVDLVVPV 152

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIR 178
           D+Y+PGCPP  EAL+ G++ +Q KIR
Sbjct: 153 DVYIPGCPPRPEALLEGVMRIQDKIR 178


>gi|297585416|ref|YP_003701196.1| NADH-quinone oxidoreductase subunit B [Bacillus selenitireducens
           MLS10]
 gi|297143873|gb|ADI00631.1| NADH-quinone oxidoreductase, B subunit [Bacillus selenitireducens
           MLS10]
          Length = 175

 Score =  181 bits (459), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 86/147 (58%), Positives = 107/147 (72%)

Query: 32  EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPR 91
           E  +K    T VDQ+  W+RT S   ++FGLACCA+EMM     RYD +RFG   RASPR
Sbjct: 18  EDINKNVFFTKVDQIKAWSRTRSFWPLSFGLACCAIEMMATGGNRYDFDRFGVIFRASPR 77

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
            +DVMIVAGT+T KMA  LR +YDQMPEP++VI+MGSCA  GG Y  +YSV+ G D+IVP
Sbjct: 78  HADVMIVAGTVTGKMAPVLRTLYDQMPEPKWVIAMGSCATCGGPYKEAYSVLNGVDKIVP 137

Query: 152 VDIYVPGCPPTAEALIYGILLLQKKIR 178
           VD+YV GCPPT  AL+ G+  L++KIR
Sbjct: 138 VDVYVSGCPPTPPALLDGVERLREKIR 164


>gi|206889677|ref|YP_002248748.1| NADH-quinone oxidoreductase chain b 2 [Thermodesulfovibrio
           yellowstonii DSM 11347]
 gi|238065023|sp|B5YKI3|NUOB1_THEYD RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName:
           Full=NADH dehydrogenase I subunit B 1; AltName:
           Full=NDH-1 subunit B 1
 gi|206741615|gb|ACI20672.1| NADH-quinone oxidoreductase chain b 2 [Thermodesulfovibrio
           yellowstonii DSM 11347]
          Length = 199

 Score =  181 bits (459), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 81/140 (57%), Positives = 109/140 (77%), Gaps = 1/140 (0%)

Query: 39  LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIV 98
           ++T++D++ +W R  SL  +TFGLACCA+EMM  +   YDL+RFG   RA+PRQ+DVMI+
Sbjct: 27  IITTLDKIASWGRCSSLWPLTFGLACCAIEMMATAASHYDLDRFGIIMRATPRQADVMII 86

Query: 99  AGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPG 158
           AGT+T KMA  +  +Y QMPEPRYVI+MGSCA  GG ++ +YS V+G D I+PVD+Y+PG
Sbjct: 87  AGTVTKKMAPVIVNLYHQMPEPRYVIAMGSCACSGGIFN-TYSTVQGVDEILPVDVYIPG 145

Query: 159 CPPTAEALIYGILLLQKKIR 178
           CPP  EALI G+L LQ+KI+
Sbjct: 146 CPPRPEALIEGLLKLQEKIK 165


>gi|16263286|ref|NP_436079.1| NuoB2 NADH I chain B [Sinorhizobium meliloti 1021]
 gi|307304395|ref|ZP_07584146.1| NADH-quinone oxidoreductase, B subunit [Sinorhizobium meliloti
           BL225C]
 gi|307318102|ref|ZP_07597538.1| NADH-quinone oxidoreductase, B subunit [Sinorhizobium meliloti
           AK83]
 gi|17380450|sp|P56897|NUOB2_RHIME RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName:
           Full=NADH dehydrogenase I subunit B 2; AltName:
           Full=NDH-1 subunit B 2
 gi|14523963|gb|AAK65491.1| NuoB2 NADH:quinone oxidoreductase (chain B) [Sinorhizobium meliloti
           1021]
 gi|306896143|gb|EFN26893.1| NADH-quinone oxidoreductase, B subunit [Sinorhizobium meliloti
           AK83]
 gi|306902597|gb|EFN33191.1| NADH-quinone oxidoreductase, B subunit [Sinorhizobium meliloti
           BL225C]
          Length = 167

 Score =  181 bits (459), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 82/141 (58%), Positives = 111/141 (78%), Gaps = 1/141 (0%)

Query: 39  LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIV 98
           L T+ D +++W+R  +L   TFG+ACCA+EM+ A   RYDL+RFG   R SPRQSDVMI+
Sbjct: 13  LFTTADSIISWSRRSALWPETFGIACCAIEMISAGCARYDLDRFGVVFRPSPRQSDVMII 72

Query: 99  AGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPG 158
           AGT+T K A  +RR+YDQMPEPR+VI+MG+CA  GG Y+ +Y+VV+G +  VPVD++VPG
Sbjct: 73  AGTVTRKFAPVVRRLYDQMPEPRWVIAMGTCAISGGVYN-TYAVVQGSETFVPVDVHVPG 131

Query: 159 CPPTAEALIYGILLLQKKIRR 179
           CPP  EAL++G LLLQ+KI++
Sbjct: 132 CPPRPEALMHGFLLLQEKIKK 152


>gi|5650745|emb|CAB51630.1| putative NADH-ubiquinone oxidoreductase subunit [Sinorhizobium
           meliloti]
          Length = 167

 Score =  181 bits (459), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 82/141 (58%), Positives = 111/141 (78%), Gaps = 1/141 (0%)

Query: 39  LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIV 98
           L T+ D +++W+R  +L   TFG+ACCA+EM+ A   RYDL+RFG   R SPRQSDVMI+
Sbjct: 13  LFTTADSIISWSRRSALWPETFGIACCAIEMISAGCARYDLDRFGVVFRPSPRQSDVMII 72

Query: 99  AGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPG 158
           AGT+T K A  +RR+YDQMPEPR+VI+MG+CA  GG Y+ +Y+VV+G +  VPVD++VPG
Sbjct: 73  AGTVTRKFAPVVRRLYDQMPEPRWVIAMGTCAISGGVYN-TYAVVQGSETFVPVDVHVPG 131

Query: 159 CPPTAEALIYGILLLQKKIRR 179
           CPP  EAL++G LLLQ+KI++
Sbjct: 132 CPPRPEALMHGFLLLQEKIKK 152


>gi|161870822|ref|YP_001599995.1| NADH dehydrogenase I chain B [Neisseria meningitidis 053442]
 gi|161596375|gb|ABX74035.1| NADH dehydrogenase I chain B [Neisseria meningitidis 053442]
          Length = 124

 Score =  181 bits (459), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 85/118 (72%), Positives = 98/118 (83%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           +  KGF+ TS D ++ + RTGSL  +TFGLACCAVEMM A M RYDL+RFG   R SPRQ
Sbjct: 6   VLKKGFITTSADTVLNYMRTGSLWPVTFGLACCAVEMMHAGMARYDLDRFGIIFRPSPRQ 65

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150
           +D+MIV GTLTNKMA ALRRVYDQ+ EPR+V+SMGSCANGGGYYHYSYSVVRG DR+V
Sbjct: 66  ADLMIVRGTLTNKMAPALRRVYDQLAEPRWVLSMGSCANGGGYYHYSYSVVRGADRVV 123


>gi|288803376|ref|ZP_06408809.1| NADH dehydrogenase I, B/C/D subunit protein [Prevotella
           melaninogenica D18]
 gi|288334196|gb|EFC72638.1| NADH dehydrogenase I, B/C/D subunit protein [Prevotella
           melaninogenica D18]
          Length = 308

 Score =  181 bits (459), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 80/161 (49%), Positives = 115/161 (71%), Gaps = 3/161 (1%)

Query: 21  KVDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78
           K +   S+++SE+   G   ++ ++DQL+ W R+ SL  +TF  +CC +E M     RYD
Sbjct: 17  KDNDTLSKMASELNDGGTNLVLGNLDQLINWGRSNSLWSLTFATSCCGIEFMSVGCARYD 76

Query: 79  LERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137
             RFGF   R SPRQ+D+++ AGT+TNKMA AL+R+YDQM EP+YVI++G CA  GG + 
Sbjct: 77  FSRFGFEVTRNSPRQADLIMCAGTITNKMAPALKRLYDQMAEPKYVIAVGGCAISGGPFK 136

Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
            SY V+RG D I+PVD+Y+PGCPP  EA+IYG++ LQ+K++
Sbjct: 137 DSYHVMRGIDEIIPVDVYIPGCPPRPEAIIYGMMQLQRKVK 177


>gi|317121592|ref|YP_004101595.1| NADH-quinone oxidoreductase subunit beta [Thermaerobacter
           marianensis DSM 12885]
 gi|315591572|gb|ADU50868.1| NADH-quinone oxidoreductase, B subunit [Thermaerobacter marianensis
           DSM 12885]
          Length = 350

 Score =  181 bits (458), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 80/145 (55%), Positives = 108/145 (74%)

Query: 37  GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVM 96
           G L T + +LV W R  S+ ++ FGLACCA+EMM A   R DL+R G   RASPRQ+D+M
Sbjct: 201 GILTTRLQELVNWGRANSMWYLLFGLACCAIEMMAAGGTRTDLDRIGSVFRASPRQADLM 260

Query: 97  IVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV 156
           IV+GT+T KMA  ++ +YDQM EP++V+SMG+CA  GG Y+  Y+VV G D+I+PVD+YV
Sbjct: 261 IVSGTVTEKMAPVVKTLYDQMAEPKFVVSMGACATNGGPYYQGYNVVDGVDKIIPVDVYV 320

Query: 157 PGCPPTAEALIYGILLLQKKIRRVG 181
            GCPP  EAL++ IL LQ K+R++G
Sbjct: 321 AGCPPRPEALVHAILKLQDKVRKIG 345


>gi|153004155|ref|YP_001378480.1| NADH dehydrogenase subunit B [Anaeromyxobacter sp. Fw109-5]
 gi|218527973|sp|A7H9V0|NUOB1_ANADF RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName:
           Full=NADH dehydrogenase I subunit B 1; AltName:
           Full=NDH-1 subunit B 1
 gi|152027728|gb|ABS25496.1| NADH-quinone oxidoreductase, B subunit [Anaeromyxobacter sp.
           Fw109-5]
          Length = 172

 Score =  181 bits (458), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 82/141 (58%), Positives = 105/141 (74%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           F  + +D+L+  AR  SL ++ FGLACC +E+MQ   PR D+ RFG  PRASPRQ+D MI
Sbjct: 16  FHTSQLDKLINMARENSLWYLLFGLACCGIELMQFGGPRADVMRFGAIPRASPRQADFMI 75

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGTLT KMA   + +YDQMPEP+YVISMGSC+N GG +   YSV +G D+++PVD+YVP
Sbjct: 76  VAGTLTYKMAERAKLLYDQMPEPKYVISMGSCSNCGGLFQLGYSVCKGVDKVIPVDVYVP 135

Query: 158 GCPPTAEALIYGILLLQKKIR 178
           GCPP  EAL  G++ LQ+ IR
Sbjct: 136 GCPPRPEALTEGLIRLQELIR 156


>gi|315638063|ref|ZP_07893248.1| NADH-quinone oxidoreductase subunit B [Campylobacter upsaliensis
           JV21]
 gi|315481911|gb|EFU72530.1| NADH-quinone oxidoreductase subunit B [Campylobacter upsaliensis
           JV21]
          Length = 167

 Score =  181 bits (458), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 83/141 (58%), Positives = 109/141 (77%), Gaps = 1/141 (0%)

Query: 39  LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIV 98
           ++TSVD+LV W R+ SL  +++GLACCA+EMM A   RYD +RFG   RASPR S+VMI+
Sbjct: 15  ILTSVDKLVQWGRSNSLWALSYGLACCAIEMMAAGGSRYDFDRFGTIFRASPRHSEVMII 74

Query: 99  AGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPG 158
           AGTL  K A   RR+YD MP+P++VISMGSCAN GG ++ +YS V+G DRI+PVDIYVPG
Sbjct: 75  AGTLCKKHAEFTRRLYDMMPDPKWVISMGSCANTGGMFN-TYSTVQGVDRIIPVDIYVPG 133

Query: 159 CPPTAEALIYGILLLQKKIRR 179
           C P  E+  + +++LQKKIR+
Sbjct: 134 CAPRPESFQFALMILQKKIRK 154


>gi|302345400|ref|YP_003813753.1| NADH-quinone oxidoreductase, B subunit [Prevotella melaninogenica
           ATCC 25845]
 gi|302149419|gb|ADK95681.1| NADH-quinone oxidoreductase, B subunit [Prevotella melaninogenica
           ATCC 25845]
          Length = 305

 Score =  181 bits (458), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 80/161 (49%), Positives = 115/161 (71%), Gaps = 3/161 (1%)

Query: 21  KVDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78
           K +   S+++SE+   G   ++ ++DQL+ W R+ SL  +TF  +CC +E M     RYD
Sbjct: 17  KDNDTLSKMASELNDGGTNLVLGNLDQLINWGRSNSLWSLTFATSCCGIEFMSVGCARYD 76

Query: 79  LERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137
             RFGF   R SPRQ+D+++ AGT+TNKMA AL+R+YDQM EP+YVI++G CA  GG + 
Sbjct: 77  FSRFGFEVTRNSPRQADLIMCAGTITNKMAPALKRLYDQMAEPKYVIAVGGCAISGGPFK 136

Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
            SY V+RG D I+PVD+Y+PGCPP  EA+IYG++ LQ+K++
Sbjct: 137 DSYHVMRGIDEIIPVDVYIPGCPPRPEAIIYGMMQLQRKVK 177


>gi|57505815|ref|ZP_00371740.1| NADH2 dehydrogenase (ubiquinone) I chain B Cj1578c [Campylobacter
           upsaliensis RM3195]
 gi|57015845|gb|EAL52634.1| NADH2 dehydrogenase (ubiquinone) I chain B Cj1578c [Campylobacter
           upsaliensis RM3195]
          Length = 167

 Score =  180 bits (457), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 83/141 (58%), Positives = 109/141 (77%), Gaps = 1/141 (0%)

Query: 39  LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIV 98
           ++TSVD+LV W R+ SL  +++GLACCA+EMM A   RYD +RFG   RASPR S+VMI+
Sbjct: 15  VLTSVDKLVQWGRSNSLWALSYGLACCAIEMMAAGGSRYDFDRFGTIFRASPRHSEVMII 74

Query: 99  AGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPG 158
           AGTL  K A   RR+YD MP+P++VISMGSCAN GG ++ +YS V+G DRI+PVDIYVPG
Sbjct: 75  AGTLCKKHAEFTRRLYDMMPDPKWVISMGSCANTGGMFN-TYSTVQGVDRIIPVDIYVPG 133

Query: 159 CPPTAEALIYGILLLQKKIRR 179
           C P  E+  + +++LQKKIR+
Sbjct: 134 CAPRPESFQFALMILQKKIRK 154


>gi|291280356|ref|YP_003497191.1| NADH-quinone oxidoreductase subunit B [Deferribacter desulfuricans
           SSM1]
 gi|290755058|dbj|BAI81435.1| NADH-quinone oxidoreductase, B subunit [Deferribacter desulfuricans
           SSM1]
          Length = 158

 Score =  180 bits (457), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 83/150 (55%), Positives = 111/150 (74%), Gaps = 4/150 (2%)

Query: 33  ITHK---GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS 89
           I HK     +  ++D ++ WAR  S+  +TFGLACCA+EMM A   +YDL+R G   RA+
Sbjct: 4   IEHKFSDNIITATIDGVINWARKSSIWPVTFGLACCAIEMMAAGASKYDLDRLGVIFRAT 63

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQ+D+MIVAGT+T KMA  +R+VYDQMPEP++VI+MGSCA  GG ++ +YS V+G D I
Sbjct: 64  PRQADLMIVAGTVTRKMAPVVRKVYDQMPEPKWVIAMGSCATSGGIFN-TYSTVQGVDEI 122

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           VPVD Y+PGCPP  EAL+  I+ LQ+KI+ 
Sbjct: 123 VPVDFYIPGCPPRPEALLDAIVALQEKIKH 152


>gi|313903494|ref|ZP_07836885.1| NADH dehydrogenase subunit B [Thermaerobacter subterraneus DSM
           13965]
 gi|313466315|gb|EFR61838.1| NADH dehydrogenase subunit B [Thermaerobacter subterraneus DSM
           13965]
          Length = 193

 Score =  180 bits (457), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 83/143 (58%), Positives = 106/143 (74%)

Query: 37  GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVM 96
           G + T++  LV W R  SL ++ FG+ACCA+EMM A   R DL+R G   RASPRQ+D+M
Sbjct: 46  GVITTNLQTLVNWGRKNSLWYLLFGIACCAIEMMAAGASRIDLDRLGSVFRASPRQADMM 105

Query: 97  IVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV 156
           IVAGT+T KMA  ++ +YDQM EPRYVI+MG+CA+ GG Y+  Y+VV G D+IVPVD+YV
Sbjct: 106 IVAGTVTEKMAPVIKTLYDQMAEPRYVIAMGACASNGGPYYQGYNVVDGVDKIVPVDVYV 165

Query: 157 PGCPPTAEALIYGILLLQKKIRR 179
            GCPP  EALIY I+ LQ K+ R
Sbjct: 166 AGCPPRPEALIYAIMKLQDKVAR 188


>gi|283782292|ref|YP_003373047.1| NADH-quinone oxidoreductase, B subunit [Pirellula staleyi DSM 6068]
 gi|283440745|gb|ADB19187.1| NADH-quinone oxidoreductase, B subunit [Pirellula staleyi DSM 6068]
          Length = 227

 Score =  180 bits (457), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 82/146 (56%), Positives = 112/146 (76%), Gaps = 2/146 (1%)

Query: 35  HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APRASPRQS 93
            +    TSV+Q + WAR  S+  MTFGLACCA+EMM A   RYD++RFG  A RA+PRQ+
Sbjct: 31  EENVFTTSVEQAINWARQSSIWPMTFGLACCAIEMMAAGASRYDMDRFGAGAFRATPRQA 90

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGG-YYHYSYSVVRGCDRIVPV 152
           D+MIVAGT+T KMAS +RR+Y+ MP+P++VI+MG+C  GGG Y+ + Y VV+G D +VPV
Sbjct: 91  DLMIVAGTVTYKMASRVRRLYNMMPDPKFVIAMGACTVGGGPYFKWGYHVVKGVDLVVPV 150

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIR 178
           D+Y+PGCPP  EAL+ G++ +Q KI+
Sbjct: 151 DVYIPGCPPRPEALLEGLMRIQDKIK 176


>gi|319955917|ref|YP_004167180.1| NADH dehydrogenase subunit b [Nitratifractor salsuginis DSM 16511]
 gi|319418321|gb|ADV45431.1| NADH dehydrogenase subunit B [Nitratifractor salsuginis DSM 16511]
          Length = 170

 Score =  180 bits (457), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 82/140 (58%), Positives = 109/140 (77%), Gaps = 1/140 (0%)

Query: 40  VTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVA 99
           +T+VD+L+ W R+ SL  +T+GLACCA+EMM +   R+D +R G   RASPRQ+DVMI+A
Sbjct: 18  LTTVDKLLNWGRSNSLWPLTYGLACCAIEMMASGASRFDFDRMGVIFRASPRQADVMILA 77

Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGC 159
           GTL+ K A   RR+YDQM EP++VISMGSCAN GG ++ +Y+ V+G DRI+PVDIY+PGC
Sbjct: 78  GTLSKKHAEFARRLYDQMAEPKWVISMGSCANTGGMFN-TYATVQGVDRIIPVDIYLPGC 136

Query: 160 PPTAEALIYGILLLQKKIRR 179
            P  E L Y +++LQKKIRR
Sbjct: 137 APRPETLQYAMMMLQKKIRR 156


>gi|284106847|ref|ZP_06386290.1| NADH-quinone oxidoreductase, B subunit [Candidatus Poribacteria sp.
           WGA-A3]
 gi|283830026|gb|EFC34302.1| NADH-quinone oxidoreductase, B subunit [Candidatus Poribacteria sp.
           WGA-A3]
          Length = 159

 Score =  180 bits (456), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 87/144 (60%), Positives = 111/144 (77%), Gaps = 2/144 (1%)

Query: 37  GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95
             + T++D LV+W R  +L  MTFGLACCA+EM+ +   RYD++RFG    RASPRQSDV
Sbjct: 11  NIITTNLDYLVSWCRKSALWPMTFGLACCAIEMIASVSSRYDIDRFGAGVFRASPRQSDV 70

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
           MIVAGT+  KMA  +RR+YDQM EPRYVISMGSCA  G +Y+ SYSVV+G D+IVPVD+Y
Sbjct: 71  MIVAGTVCRKMAPVIRRIYDQMAEPRYVISMGSCATSGNHYN-SYSVVQGVDQIVPVDVY 129

Query: 156 VPGCPPTAEALIYGILLLQKKIRR 179
           V GCPP  EAL+  ++ LQ+KI++
Sbjct: 130 VAGCPPRPEALLDALIKLQEKIQK 153


>gi|256380664|ref|YP_003104324.1| NADH dehydrogenase subunit B [Actinosynnema mirum DSM 43827]
 gi|255924967|gb|ACU40478.1| NADH-quinone oxidoreductase, B subunit [Actinosynnema mirum DSM
           43827]
          Length = 182

 Score =  180 bits (456), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 87/148 (58%), Positives = 108/148 (72%), Gaps = 2/148 (1%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RAS 89
            E    G L+ SV++LV W R  SL   TFGLACCA+EMM    PRYDL RFG    RAS
Sbjct: 4   EEKLPNGVLLVSVEKLVNWTRKSSLWPATFGLACCAIEMMTTGAPRYDLARFGMEVFRAS 63

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQ+D+MIVAG +TNKMA  LR++YDQMPEPR+V++MG CA+ GG ++ +Y+VV+G D I
Sbjct: 64  PRQADLMIVAGRVTNKMAPVLRQIYDQMPEPRWVLAMGVCASSGGMFN-NYAVVQGVDHI 122

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKI 177
           VPVD+Y+PGCPP  E LI  IL +  KI
Sbjct: 123 VPVDMYLPGCPPRPEMLIDAILKIHAKI 150


>gi|227822752|ref|YP_002826724.1| NADH dehydrogenase subunit B [Sinorhizobium fredii NGR234]
 gi|227341753|gb|ACP25971.1| NADH dehydrogenase I chain B1 [Sinorhizobium fredii NGR234]
          Length = 167

 Score =  180 bits (456), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 82/141 (58%), Positives = 110/141 (78%), Gaps = 1/141 (0%)

Query: 39  LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIV 98
           L T+ D +++W+R  +L   TFG+ACCA+EM+ A   RYDL+RFG   R SPRQSDVMI+
Sbjct: 13  LFTTADSVISWSRRSALWPETFGIACCAIEMISAGCARYDLDRFGVVFRPSPRQSDVMII 72

Query: 99  AGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPG 158
           AGT+T K A  +RR+YDQMPEPR+VI+MG+CA  GG Y+ +Y+VV+G    VPVD++VPG
Sbjct: 73  AGTVTRKFAPVVRRLYDQMPEPRWVIAMGTCAISGGVYN-TYAVVQGAQTFVPVDVHVPG 131

Query: 159 CPPTAEALIYGILLLQKKIRR 179
           CPP  EAL++G LLLQ+KI++
Sbjct: 132 CPPRPEALMHGFLLLQEKIKK 152


>gi|108804469|ref|YP_644406.1| NADH-quinone oxidoreductase subunit B [Rubrobacter xylanophilus DSM
           9941]
 gi|123069071|sp|Q1AVI4|NUOB_RUBXD RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|108765712|gb|ABG04594.1| NADH-quinone oxidoreductase, B subunit [Rubrobacter xylanophilus
           DSM 9941]
          Length = 251

 Score =  179 bits (455), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 86/158 (54%), Positives = 110/158 (69%), Gaps = 5/158 (3%)

Query: 29  ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFG---FA 85
           +  +      + TS D+L  WAR  SL  + FGLACCA+EMM   M   DLERFG   FA
Sbjct: 3   LMQKFDEPNIITTSTDKLFNWARKNSLWPLQFGLACCAIEMMSTGMAHNDLERFGAGFFA 62

Query: 86  PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRG 145
              SPRQ+DVMIV+GT++ KMA  + R+Y+QMPEP++VI+MG+CA  GG +   YSV+ G
Sbjct: 63  --GSPRQADVMIVSGTVSTKMAERMTRLYEQMPEPKWVIAMGACAISGGPFLDGYSVLMG 120

Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
            DR++PVD+YVPGCPP  EALI+GI+ LQKKI R   V
Sbjct: 121 ADRVIPVDVYVPGCPPRPEALIFGIMTLQKKIEREQQV 158


>gi|313672278|ref|YP_004050389.1| NADH dehydrogenase subunit b [Calditerrivibrio nitroreducens DSM
           19672]
 gi|312939034|gb|ADR18226.1| NADH dehydrogenase subunit B [Calditerrivibrio nitroreducens DSM
           19672]
          Length = 158

 Score =  179 bits (455), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 82/141 (58%), Positives = 108/141 (76%), Gaps = 1/141 (0%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
            + T+VD ++ WAR  SL  +TFGLACCA+EMM     +YDL+R G   RA+PRQ+D+MI
Sbjct: 12  IITTTVDGVINWARRSSLWPVTFGLACCAIEMMAVGASKYDLDRLGVIFRATPRQADLMI 71

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGT+T KMA  +R+VYDQMPEP++VI+MGSCA  GG ++ +YS V+G D IVPVD Y+P
Sbjct: 72  VAGTVTRKMAPVVRKVYDQMPEPKWVIAMGSCATSGGIFN-TYSTVQGVDEIVPVDFYIP 130

Query: 158 GCPPTAEALIYGILLLQKKIR 178
           GCPP  EAL+  I+ LQ+KI+
Sbjct: 131 GCPPRPEALLDAIVALQEKIK 151


>gi|163783891|ref|ZP_02178866.1| NADH dehydrogenase I chain B [Hydrogenivirga sp. 128-5-R1-1]
 gi|159880835|gb|EDP74364.1| NADH dehydrogenase I chain B [Hydrogenivirga sp. 128-5-R1-1]
          Length = 172

 Score =  179 bits (455), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 78/146 (53%), Positives = 113/146 (77%), Gaps = 1/146 (0%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           + + G ++T+ +++++W R  SL  ++ GLACCA+EMM  +  R+D +R G   R SPRQ
Sbjct: 4   MNNNGIILTTAEEVLSWGRRNSLWPVSIGLACCAIEMMHTAASRFDTDRLGIIFRGSPRQ 63

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           SDV+IVAGT+ NK+A  L+ +YDQMP+P++VISMG CA+ GG +  +YS ++G DRI+PV
Sbjct: 64  SDVLIVAGTVVNKVAPMLKLIYDQMPDPKWVISMGGCASAGGPFP-TYSTLQGVDRIIPV 122

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIR 178
           D+YVPGCPPT +AL++GIL LQKKI+
Sbjct: 123 DVYVPGCPPTPQALLWGILELQKKIK 148


>gi|317121157|ref|YP_004101160.1| NADH dehydrogenase subunit B [Thermaerobacter marianensis DSM
           12885]
 gi|315591137|gb|ADU50433.1| NADH dehydrogenase subunit B [Thermaerobacter marianensis DSM
           12885]
          Length = 193

 Score =  179 bits (455), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 82/143 (57%), Positives = 106/143 (74%)

Query: 37  GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVM 96
           G + T++  LV W R  SL ++ FG+ACCA+EMM A   R DL+R G   RASPRQ+D+M
Sbjct: 46  GVITTNLQTLVNWGRKNSLWYLLFGIACCAIEMMAAGASRIDLDRLGSVFRASPRQADLM 105

Query: 97  IVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV 156
           IVAGT+T KMA  ++ +YDQM EP+YVI+MG+CA+ GG Y+  Y+VV G D+IVPVD+YV
Sbjct: 106 IVAGTVTEKMAPVIKTLYDQMAEPKYVIAMGACASNGGPYYQGYNVVDGVDKIVPVDVYV 165

Query: 157 PGCPPTAEALIYGILLLQKKIRR 179
            GCPP  EALIY I+ LQ K+ R
Sbjct: 166 AGCPPRPEALIYAIMKLQDKVAR 188


>gi|149909804|ref|ZP_01898455.1| NuoB2 NADH I CHAIN B [Moritella sp. PE36]
 gi|149807136|gb|EDM67092.1| NuoB2 NADH  I CHAIN B [Moritella sp. PE36]
          Length = 181

 Score =  179 bits (455), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 83/147 (56%), Positives = 111/147 (75%), Gaps = 1/147 (0%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP 90
           +E      L T+ D ++ W+R  SL   TFG+ACCA+EM+ A   RYDL+RFG   R+SP
Sbjct: 5   TERYKDNVLFTTSDSIINWSRKSSLWPETFGIACCAIEMIAAGCARYDLDRFGVVFRSSP 64

Query: 91  RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150
           RQSDVMI+AGT+T KMA  +RR+YDQMPEPRYVI+MG+CA  GG Y+ +YSVV+G D  V
Sbjct: 65  RQSDVMIIAGTVTKKMAPIIRRLYDQMPEPRYVIAMGTCAISGGVYN-TYSVVQGSDLFV 123

Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKI 177
           PVD++V GCPP  +AL++ ++LLQ++I
Sbjct: 124 PVDVHVAGCPPRPDALLHAMVLLQQQI 150


>gi|260592325|ref|ZP_05857783.1| NADH dehydrogenase I, B subunit [Prevotella veroralis F0319]
 gi|260535712|gb|EEX18329.1| NADH dehydrogenase I, B subunit [Prevotella veroralis F0319]
          Length = 295

 Score =  179 bits (454), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 79/161 (49%), Positives = 115/161 (71%), Gaps = 3/161 (1%)

Query: 21  KVDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78
           K +   S+++SE+   G   ++ ++DQL+ W R+ SL  +TF  +CC +E M     RYD
Sbjct: 17  KDNDTLSKMASELNDGGTNLVLGNLDQLINWGRSNSLWSLTFATSCCGIEFMAVGCARYD 76

Query: 79  LERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137
             RFGF   R SPRQ+D+++ AGT+TNKMA AL+R+YD+M EP+YVI++G CA  GG + 
Sbjct: 77  FSRFGFEVTRNSPRQADLIMCAGTITNKMAPALKRLYDEMAEPKYVIAVGGCAISGGPFK 136

Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
            SY V+RG D I+PVD+Y+PGCPP  EA+IYG++ LQ+K++
Sbjct: 137 DSYHVMRGIDEIIPVDVYIPGCPPRPEAIIYGMMQLQRKVK 177


>gi|320353962|ref|YP_004195301.1| NADH dehydrogenase subunit B [Desulfobulbus propionicus DSM 2032]
 gi|320122464|gb|ADW18010.1| NADH dehydrogenase subunit B [Desulfobulbus propionicus DSM 2032]
          Length = 173

 Score =  179 bits (453), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 84/141 (59%), Positives = 108/141 (76%), Gaps = 1/141 (0%)

Query: 39  LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIV 98
           ++  +++LV W R GS+  +TFGLACCA+EMM A     DL+RFG   RASPRQ+D M+V
Sbjct: 25  ILGPLNKLVNWGRAGSIWPVTFGLACCAIEMMDAGASTNDLDRFGILFRASPRQADCMVV 84

Query: 99  AGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPG 158
           AGTL+ KMA  LRRVYDQMPEPRYV++MGSCA  GG +  +Y+V +G D+I+PVD+YVPG
Sbjct: 85  AGTLSKKMAPVLRRVYDQMPEPRYVLAMGSCACSGGVFD-TYAVTQGVDQIIPVDVYVPG 143

Query: 159 CPPTAEALIYGILLLQKKIRR 179
           CPP  EAL+ G L LQ+KI +
Sbjct: 144 CPPRPEALLEGFLKLQEKILK 164


>gi|288818716|ref|YP_003433064.1| NADH dehydrogenase chain B [Hydrogenobacter thermophilus TK-6]
 gi|288788116|dbj|BAI69863.1| NADH dehydrogenase chain B [Hydrogenobacter thermophilus TK-6]
 gi|308752303|gb|ADO45786.1| NADH-quinone oxidoreductase, B subunit [Hydrogenobacter
           thermophilus TK-6]
          Length = 179

 Score =  179 bits (453), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 78/149 (52%), Positives = 113/149 (75%), Gaps = 1/149 (0%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           +   GF++T+VD+L+ W R  +L  +T GLACCA+EMM  +  R+DL+R G   RASPRQ
Sbjct: 4   LNSNGFVITTVDELLRWGRRNALWPVTIGLACCAIEMMHTAASRFDLDRLGVIFRASPRQ 63

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           +DV+IVAGT+ NK+A  L+ +++QMP+P++ I+MG CA+ GG +  +Y+ ++G DRI+PV
Sbjct: 64  ADVLIVAGTVVNKVAPMLKLIWEQMPDPKWCITMGGCASAGGPFP-TYATLQGMDRIIPV 122

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVG 181
           D+Y+PGCPP  + LIYGIL LQKKI+  G
Sbjct: 123 DVYIPGCPPHPQGLIYGILQLQKKIKEKG 151


>gi|325003723|ref|ZP_08124835.1| NADH dehydrogenase subunit B [Pseudonocardia sp. P1]
          Length = 235

 Score =  179 bits (453), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 84/148 (56%), Positives = 109/148 (73%), Gaps = 2/148 (1%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RAS 89
            E    G L+T+V++LV W R  SL   TFGLACCA+EMM    PRYDL RFG    RAS
Sbjct: 4   EENLPSGVLLTNVEKLVNWTRKSSLWPATFGLACCAIEMMTTGAPRYDLARFGMEVFRAS 63

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQ+D+MIVAG ++NKMA  LR++YDQMPEPR+V++MG CA+ GG ++ +Y++V+G D +
Sbjct: 64  PRQADLMIVAGRVSNKMAPVLRQIYDQMPEPRWVLAMGVCASSGGMFN-NYAIVQGVDHV 122

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKI 177
           VPVD+Y+PGCPP  E LI  IL +  KI
Sbjct: 123 VPVDMYLPGCPPRPEMLIDAILKIHAKI 150


>gi|150375773|ref|YP_001312369.1| NADH dehydrogenase subunit B [Sinorhizobium medicae WSM419]
 gi|150030320|gb|ABR62436.1| NADH-quinone oxidoreductase, B subunit [Sinorhizobium medicae
           WSM419]
          Length = 167

 Score =  179 bits (453), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 81/140 (57%), Positives = 110/140 (78%), Gaps = 1/140 (0%)

Query: 39  LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIV 98
           L T+ + +++W+R  +L   TFG+ACCA+EM+ A   RYDL+RFG   R SPRQSDVMI+
Sbjct: 13  LFTTAESIISWSRRSALWPETFGIACCAIEMISAGCARYDLDRFGVVFRPSPRQSDVMII 72

Query: 99  AGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPG 158
           AGT+T K A  +RR+YDQMPEPR+VI+MG+CA  GG Y+ +Y+VV+G +  VPVD++VPG
Sbjct: 73  AGTVTRKFAPVVRRLYDQMPEPRWVIAMGTCAISGGVYN-TYAVVQGSETFVPVDVHVPG 131

Query: 159 CPPTAEALIYGILLLQKKIR 178
           CPP  EAL++G LLLQ+KI+
Sbjct: 132 CPPRPEALMHGFLLLQEKIK 151


>gi|325269277|ref|ZP_08135895.1| NADH dehydrogenase I subunit B [Prevotella multiformis DSM 16608]
 gi|324988404|gb|EGC20369.1| NADH dehydrogenase I subunit B [Prevotella multiformis DSM 16608]
          Length = 297

 Score =  178 bits (452), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 78/161 (48%), Positives = 115/161 (71%), Gaps = 3/161 (1%)

Query: 21  KVDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78
           K +   S+++SE+   G   ++ ++DQL+ W R+ SL  +TF  +CC +E M     RYD
Sbjct: 17  KDNDTLSKMASELNDGGTNLVLGNLDQLINWGRSNSLWSLTFATSCCGIEFMAVGCARYD 76

Query: 79  LERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137
             RFGF   R SPRQ+D+++ AGT+TNKMA AL+R+YD+M EP+YVI++G CA  GG + 
Sbjct: 77  FSRFGFEVTRNSPRQADLIMCAGTITNKMAPALKRLYDEMAEPKYVIAVGGCAISGGPFK 136

Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
            SY V+RG D I+PVD+Y+PGCPP  EA++YG++ LQ+K++
Sbjct: 137 DSYHVMRGIDEIIPVDVYIPGCPPRPEAIVYGMMQLQRKVK 177


>gi|289548152|ref|YP_003473140.1| NADH-quinone oxidoreductase subunit beta [Thermocrinis albus DSM
           14484]
 gi|289181769|gb|ADC89013.1| NADH-quinone oxidoreductase, B subunit [Thermocrinis albus DSM
           14484]
          Length = 178

 Score =  178 bits (452), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 77/149 (51%), Positives = 116/149 (77%), Gaps = 1/149 (0%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           +   GF++T+V++L++W+R  +L  +T GLACCA+EMM A+  R+DL+R G   RASPRQ
Sbjct: 4   LNSNGFVLTTVEELLSWSRRNALWPVTIGLACCAIEMMHAAASRFDLDRLGVIFRASPRQ 63

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           +D++IVAGT+ NK+A  L+ +++QMP+P++ I+MG CA+ GG +  +YS ++G DRI+PV
Sbjct: 64  ADLLIVAGTVVNKVAPMLKLIWEQMPDPKWCITMGGCASAGGPFP-TYSTLQGMDRIIPV 122

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVG 181
           D+Y+PGCPP  + L+YGIL LQKKI+  G
Sbjct: 123 DVYIPGCPPHPQGLLYGILQLQKKIKEQG 151


>gi|87311558|ref|ZP_01093676.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit [Blastopirellula
           marina DSM 3645]
 gi|87285680|gb|EAQ77596.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit [Blastopirellula
           marina DSM 3645]
          Length = 198

 Score =  178 bits (452), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 83/146 (56%), Positives = 113/146 (77%), Gaps = 2/146 (1%)

Query: 35  HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APRASPRQS 93
            +  + T+++Q + WA+  S+  MTFGLACCA+EMM A   RYDL+RFG  A RA+PRQ+
Sbjct: 11  EENVVFTTLEQAINWAQQSSIWPMTFGLACCAIEMMAAGASRYDLDRFGAGAFRATPRQA 70

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGG-YYHYSYSVVRGCDRIVPV 152
           D+MIVAGT+T KMAS +RR+Y+ MP+P+YVI+MG+C  GGG Y+ Y Y VV+G D +VPV
Sbjct: 71  DLMIVAGTVTYKMASRVRRLYNMMPDPKYVIAMGACTVGGGPYFKYGYHVVKGVDLVVPV 130

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIR 178
           D+YVPGCPP  EAL+ G++ +Q KI+
Sbjct: 131 DVYVPGCPPRPEALLEGLMRIQDKIK 156


>gi|16082574|ref|NP_394429.1| NADH dehydrogenase subunit B [Thermoplasma acidophilum DSM 1728]
          Length = 157

 Score =  178 bits (452), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 85/143 (59%), Positives = 106/143 (74%), Gaps = 1/143 (0%)

Query: 37  GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95
           G + T++DQ + WAR+ SL  +TFGLACCA+EMM       D+ RFG    R SPRQSD+
Sbjct: 10  GVVTTTLDQALEWARSNSLWPLTFGLACCAIEMMAIQASDMDISRFGSEIFRNSPRQSDL 69

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
           MIV+GT+T KMA  +RR+YD+MP P+YVI+ G C   GG Y+  YSVV G DR+VPVD+Y
Sbjct: 70  MIVSGTVTKKMAPRVRRIYDEMPYPKYVIAQGVCVIQGGPYNQGYSVVLGVDRVVPVDVY 129

Query: 156 VPGCPPTAEALIYGILLLQKKIR 178
           +PGCPPT EAL  GI+LLQKKIR
Sbjct: 130 IPGCPPTPEALTNGIILLQKKIR 152


>gi|331699311|ref|YP_004335550.1| NAD(P)H-quinone oxidoreductase subunit K [Pseudonocardia
           dioxanivorans CB1190]
 gi|326954000|gb|AEA27697.1| NAD(P)H-quinone oxidoreductase subunit K [Pseudonocardia
           dioxanivorans CB1190]
          Length = 183

 Score =  178 bits (452), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 84/148 (56%), Positives = 109/148 (73%), Gaps = 2/148 (1%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RAS 89
            E    G L+T+V++LV W R  SL   TFGLACCA+EMM    PRYDL RFG    RAS
Sbjct: 4   EEKLPSGVLLTNVEKLVNWTRKSSLWPATFGLACCAIEMMTTGAPRYDLARFGMEVFRAS 63

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQ+D+MIVAG ++NKMA  LR++YDQMPEPR+V++MG CA+ GG ++ +Y++V+G D +
Sbjct: 64  PRQADLMIVAGRVSNKMAPVLRQIYDQMPEPRWVLAMGVCASSGGMFN-NYAIVQGVDHV 122

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKI 177
           VPVD+Y+PGCPP  E LI  IL +  KI
Sbjct: 123 VPVDMYLPGCPPRPEMLIDAILKIHAKI 150


>gi|322421849|ref|YP_004201072.1| NADH-quinone oxidoreductase subunit B [Geobacter sp. M18]
 gi|320128236|gb|ADW15796.1| NADH-quinone oxidoreductase, B subunit [Geobacter sp. M18]
          Length = 170

 Score =  178 bits (451), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 80/145 (55%), Positives = 108/145 (74%), Gaps = 1/145 (0%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
            + TS+D LV WAR  S+  MTFGLACCA+EMM     ++DL+RFG   RASPRQSD +I
Sbjct: 11  IITTSLDSLVNWARKSSIWPMTFGLACCAIEMMATGAAKHDLDRFGIIFRASPRQSDCII 70

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           +AGT+T KM   ++ VY+QMPEP++V++MG+CA  GG +  +YSVV+G D  +PVD+Y+P
Sbjct: 71  IAGTVTQKMLPVIKTVYEQMPEPKWVVAMGACACSGGVFD-TYSVVQGIDEALPVDVYIP 129

Query: 158 GCPPTAEALIYGILLLQKKIRRVGN 182
           GCPP  EAL+YG++ LQ KI +  N
Sbjct: 130 GCPPRPEALLYGLMKLQDKISKEKN 154


>gi|10640284|emb|CAC12098.1| probable NADH dehydrogenase, chain B [Thermoplasma acidophilum]
          Length = 149

 Score =  178 bits (451), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 85/143 (59%), Positives = 106/143 (74%), Gaps = 1/143 (0%)

Query: 37  GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95
           G + T++DQ + WAR+ SL  +TFGLACCA+EMM       D+ RFG    R SPRQSD+
Sbjct: 2   GVVTTTLDQALEWARSNSLWPLTFGLACCAIEMMAIQASDMDISRFGSEIFRNSPRQSDL 61

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
           MIV+GT+T KMA  +RR+YD+MP P+YVI+ G C   GG Y+  YSVV G DR+VPVD+Y
Sbjct: 62  MIVSGTVTKKMAPRVRRIYDEMPYPKYVIAQGVCVIQGGPYNQGYSVVLGVDRVVPVDVY 121

Query: 156 VPGCPPTAEALIYGILLLQKKIR 178
           +PGCPPT EAL  GI+LLQKKIR
Sbjct: 122 IPGCPPTPEALTNGIILLQKKIR 144


>gi|39995448|ref|NP_951399.1| NADH dehydrogenase I subunit B [Geobacter sulfurreducens PCA]
 gi|81703477|sp|Q74GA7|NUOB_GEOSL RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|39982211|gb|AAR33672.1| NADH dehydrogenase I, B subunit [Geobacter sulfurreducens PCA]
 gi|298504447|gb|ADI83170.1| NADH dehydrogenase I, B subunit [Geobacter sulfurreducens KN400]
          Length = 170

 Score =  177 bits (450), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 82/145 (56%), Positives = 107/145 (73%), Gaps = 1/145 (0%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           F+ TS+D LV WAR  S+  MTFGLACCA+EMM       DL+RFG   RASPRQSD +I
Sbjct: 11  FITTSLDSLVNWARKSSIWPMTFGLACCAIEMMATGASHNDLDRFGIIFRASPRQSDCII 70

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           +AGT+T KM   ++ VY+QMPEP++V++MG+CA  GG +  +YSVV+G D  +PVD+Y+P
Sbjct: 71  IAGTVTKKMLPVIKTVYEQMPEPKWVVAMGACACSGGVFD-TYSVVQGIDTALPVDVYIP 129

Query: 158 GCPPTAEALIYGILLLQKKIRRVGN 182
           GCPP  EAL+YG+L LQ KI +  N
Sbjct: 130 GCPPRPEALLYGLLKLQDKIMKDKN 154


>gi|313901777|ref|ZP_07835202.1| NADH-quinone oxidoreductase, B subunit [Thermaerobacter
           subterraneus DSM 13965]
 gi|313467955|gb|EFR63444.1| NADH-quinone oxidoreductase, B subunit [Thermaerobacter
           subterraneus DSM 13965]
          Length = 236

 Score =  177 bits (450), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 80/144 (55%), Positives = 106/144 (73%)

Query: 37  GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVM 96
           G +   + +LV W R  SL ++ FGLACCA+EMM A   R DL+R G   RASPRQ+D+M
Sbjct: 87  GIVTARLQELVNWGRANSLWYLLFGLACCAIEMMAAGATRTDLDRIGSVFRASPRQADLM 146

Query: 97  IVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV 156
           IV+GT+T KMA  ++ +YDQM EP++VISMG+CA  GG Y+  Y+VV G D+I+PVD+YV
Sbjct: 147 IVSGTVTEKMAPVVKTLYDQMAEPKFVISMGACATNGGPYYQGYNVVDGVDKIIPVDVYV 206

Query: 157 PGCPPTAEALIYGILLLQKKIRRV 180
            GCPP  EAL++ IL LQ K+R+V
Sbjct: 207 AGCPPRPEALVHAILKLQDKVRKV 230


>gi|289582900|ref|YP_003481366.1| NADH-quinone oxidoreductase subunit beta [Natrialba magadii ATCC
           43099]
 gi|289532453|gb|ADD06804.1| NADH-quinone oxidoreductase, B subunit [Natrialba magadii ATCC
           43099]
          Length = 235

 Score =  177 bits (450), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 78/161 (48%), Positives = 112/161 (69%), Gaps = 2/161 (1%)

Query: 20  EKVDADF-SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78
           E VD  F S++        F++T  D+ + W R  S+  + FG+ACC++EMM     ++D
Sbjct: 27  EGVDDRFNSKLREAFGASPFILTKFDEFMNWVRGNSMFMLQFGIACCSIEMMHTYAIKHD 86

Query: 79  LERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137
           L+RFG   PRASPRQ+DVMIV GT+ +K    ++RVYDQMPEP++V+ MGSC   GG + 
Sbjct: 87  LDRFGAGVPRASPRQADVMIVPGTIVSKFGPRMKRVYDQMPEPKFVVGMGSCTISGGPFQ 146

Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
             Y+VV+G + I+P+DI+VPGCPP  EAL+YG+L LQ++I+
Sbjct: 147 EGYNVVKGAEEIIPIDIHVPGCPPRPEALLYGVLKLQERIK 187


>gi|315608360|ref|ZP_07883349.1| NADH-quinone oxidoreductase subunit B [Prevotella buccae ATCC
           33574]
 gi|315249990|gb|EFU29990.1| NADH-quinone oxidoreductase subunit B [Prevotella buccae ATCC
           33574]
          Length = 287

 Score =  177 bits (450), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 76/161 (47%), Positives = 113/161 (70%), Gaps = 3/161 (1%)

Query: 21  KVDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78
           K +    +++ E+   G   ++ ++DQL+ W R+ SL  +TF  +CC +E M     RYD
Sbjct: 17  KDNGTLEKMADELNEGGVNLVLGNLDQLINWGRSNSLWSLTFATSCCGIEFMATGCARYD 76

Query: 79  LERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137
             RFGF   R SPRQ+D+++ AGT+TNKMA AL+R+YD+M EP+YV+++G CA  GG + 
Sbjct: 77  FSRFGFEVTRNSPRQADLIMCAGTITNKMAPALKRLYDEMAEPKYVVAVGGCAVSGGPFK 136

Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
            SY VVRG D I+PVD+Y+PGCPP  EA++YG++ LQ+K++
Sbjct: 137 SSYHVVRGIDEIIPVDVYIPGCPPRPEAIMYGMMQLQRKVK 177


>gi|219848534|ref|YP_002462967.1| NADH dehydrogenase subunit B [Chloroflexus aggregans DSM 9485]
 gi|238065029|sp|B8GA16|NUOB2_CHLAD RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName:
           Full=NADH dehydrogenase I subunit B 2; AltName:
           Full=NDH-1 subunit B 2
 gi|219542793|gb|ACL24531.1| NADH-quinone oxidoreductase, B subunit [Chloroflexus aggregans DSM
           9485]
          Length = 264

 Score =  177 bits (450), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 83/157 (52%), Positives = 112/157 (71%), Gaps = 1/157 (0%)

Query: 24  ADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFG 83
           AD      E+  +G L+T+V++   W R  S+  M FGLACCA+EMM   + RYD+ RFG
Sbjct: 2   ADIDPNQLELERQGILLTTVNRFYNWGRRSSIWPMAFGLACCAIEMMAFGLSRYDVARFG 61

Query: 84  FAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142
               RASPRQ+D+MIVAGT+T KMA  + R+Y+QM EPRYVISMG+CA  GG +   Y+V
Sbjct: 62  AELFRASPRQADLMIVAGTVTKKMAPQVVRLYNQMAEPRYVISMGACATSGGPFRDGYNV 121

Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           +RG D ++PVD+YVPGCPP  EAL++ ++ LQ++I R
Sbjct: 122 LRGIDLLIPVDVYVPGCPPRPEALLHALMTLQEQIDR 158


>gi|288926087|ref|ZP_06420015.1| proton-translocating NADH-quinone oxidoreductase, B subunit
           [Prevotella buccae D17]
 gi|288337127|gb|EFC75485.1| proton-translocating NADH-quinone oxidoreductase, B subunit
           [Prevotella buccae D17]
          Length = 287

 Score =  177 bits (449), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 76/161 (47%), Positives = 113/161 (70%), Gaps = 3/161 (1%)

Query: 21  KVDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78
           K +    +++ E+   G   ++ ++DQL+ W R+ SL  +TF  +CC +E M     RYD
Sbjct: 17  KDNGTLEKMADELNEGGVNLVLGNLDQLINWGRSNSLWSLTFATSCCGIEFMATGCARYD 76

Query: 79  LERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137
             RFGF   R SPRQ+D+++ AGT+TNKMA AL+R+YD+M EP+YV+++G CA  GG + 
Sbjct: 77  FSRFGFEVTRNSPRQADLIMCAGTITNKMAPALKRLYDEMAEPKYVVAVGGCAISGGPFK 136

Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
            SY VVRG D I+PVD+Y+PGCPP  EA++YG++ LQ+K++
Sbjct: 137 SSYHVVRGIDEIIPVDVYIPGCPPRPEAIMYGMMQLQRKVK 177


>gi|39998533|ref|NP_954484.1| trifunctional NADH dehydrogenase I subunit B/C/D [Geobacter
           sulfurreducens PCA]
 gi|81700831|sp|Q746S4|NUBCD_GEOSL RecName: Full=NADH-quinone oxidoreductase subunit B/C/D; AltName:
           Full=NADH dehydrogenase I subunit B/C/D; AltName:
           Full=NDH-1 subunit B/C/D
 gi|39985480|gb|AAR36834.1| NADH dehydrogenase I, B/C/D subunits [Geobacter sulfurreducens PCA]
 gi|298507477|gb|ADI86200.1| NADH dehydrogenase I, B/C/D subunits [Geobacter sulfurreducens
           KN400]
          Length = 792

 Score =  177 bits (449), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 78/150 (52%), Positives = 110/150 (73%), Gaps = 2/150 (1%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APRAS 89
           +E+     ++ S+D L+ W R  SL  M FGL+CC VEMM +   RYD+ RFG    R +
Sbjct: 4   TEVPQNNIILASLDDLINWGRANSLWPMFFGLSCCFVEMMTSFTSRYDVSRFGAEVLRGT 63

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PR++D+M++AGT+  KMA ++ R+Y+QM EP++VISMGSCAN GG Y   YSVV+G ++I
Sbjct: 64  PREADLMVIAGTVFKKMAPSILRLYEQMAEPKWVISMGSCANSGGMYDV-YSVVQGVNQI 122

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           +PVD++VPGCPP  EA + G++LLQ+KIRR
Sbjct: 123 IPVDVHVPGCPPRPEAFLQGLMLLQEKIRR 152


>gi|220904929|ref|YP_002480241.1| NADH-quinone oxidoreductase subunit B [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
 gi|238065121|sp|B8J1D6|NUOB_DESDA RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|219869228|gb|ACL49563.1| NADH-quinone oxidoreductase, B subunit [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
          Length = 183

 Score =  177 bits (449), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 83/143 (58%), Positives = 106/143 (74%), Gaps = 1/143 (0%)

Query: 37  GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVM 96
           G ++  ++ LV W R GS+  +TFGLACCA+EMM      +DL+RFG   RASPRQ+D M
Sbjct: 33  GAVIGPLNALVNWGRAGSIWPVTFGLACCAIEMMATGAAHHDLDRFGIIFRASPRQADCM 92

Query: 97  IVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV 156
           +VAGTL+ KMA  LRRVYDQMPEPRYV++MGSCA  GG +  SY+V +G D++VPVD+YV
Sbjct: 93  VVAGTLSKKMAPVLRRVYDQMPEPRYVLAMGSCACSGGLFQ-SYAVTQGVDQVVPVDVYV 151

Query: 157 PGCPPTAEALIYGILLLQKKIRR 179
           PGCPP  EAL  G + LQ+ I +
Sbjct: 152 PGCPPRPEALFDGFIRLQEIINK 174


>gi|320161226|ref|YP_004174450.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit family protein
           [Anaerolinea thermophila UNI-1]
 gi|319995079|dbj|BAJ63850.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit family protein
           [Anaerolinea thermophila UNI-1]
          Length = 217

 Score =  177 bits (448), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 79/161 (49%), Positives = 117/161 (72%), Gaps = 2/161 (1%)

Query: 20  EKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDL 79
           E++ +    I  E+ ++   VT++D++  W+R  SL  M FGLACCA+EM+  +  R+D 
Sbjct: 4   EELHSPGYEIPPEMQNQ-VTVTTLDRIYNWSRKNSLWPMMFGLACCAIEMIATAASRFDF 62

Query: 80  ERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY 138
            RFG    R SPRQ+DVMIV+GT+T KM   + R+Y+QMPEP+YV++MG+CA+GGG +  
Sbjct: 63  SRFGMEVMRPSPRQADVMIVSGTVTKKMVPQIVRLYNQMPEPKYVVAMGACASGGGPFKE 122

Query: 139 SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
            Y+VV G D+ +PVD+Y+PGCPPT +AL+ G+++LQKK+ R
Sbjct: 123 GYNVVSGIDKFIPVDVYIPGCPPTPQALLNGLIMLQKKVER 163


>gi|325857136|ref|ZP_08172426.1| NADH-quinone oxidoreductase, B subunit [Prevotella denticola CRIS
           18C-A]
 gi|327313379|ref|YP_004328816.1| NADH-quinone oxidoreductase subunit B [Prevotella denticola F0289]
 gi|325483199|gb|EGC86177.1| NADH-quinone oxidoreductase, B subunit [Prevotella denticola CRIS
           18C-A]
 gi|326945576|gb|AEA21461.1| NADH-quinone oxidoreductase, B subunit [Prevotella denticola F0289]
          Length = 297

 Score =  177 bits (448), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 77/161 (47%), Positives = 114/161 (70%), Gaps = 3/161 (1%)

Query: 21  KVDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78
           K +    +++SE+   G   ++ ++DQL+ W R+ SL  +TF  +CC +E M     RYD
Sbjct: 17  KDNDTLGKMASELNDGGTNLVLGNLDQLINWGRSNSLWSLTFATSCCGIEFMAVGCARYD 76

Query: 79  LERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137
             RFGF   R SPRQ+D+++ AGT+TNKMA AL+R+YD+M EP+YV+++G CA  GG + 
Sbjct: 77  FSRFGFEVTRNSPRQADLIMCAGTITNKMAPALKRLYDEMAEPKYVVAVGGCAISGGPFK 136

Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
            SY V+RG D I+PVD+Y+PGCPP  EA+IYG++ LQ+K++
Sbjct: 137 DSYHVMRGIDEIIPVDVYIPGCPPRPEAIIYGMMQLQRKVK 177


>gi|258592365|emb|CBE68674.1| NADH-ubiquinone oxidoreductase 20 kDa subunit (NADH dehydrogenase
           subunit 10) [NC10 bacterium 'Dutch sediment']
          Length = 175

 Score =  177 bits (448), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 85/143 (59%), Positives = 110/143 (76%), Gaps = 2/143 (1%)

Query: 39  LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMI 97
           + T+V+ L  WAR  S   MTFGLACCA+EMM A   R+DL+R G    R SPRQSDVMI
Sbjct: 14  ITTTVEWLFNWARKSSPWPMTFGLACCAIEMMAAGASRFDLDRLGAGVFRPSPRQSDVMI 73

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCA-NGGGYYHYSYSVVRGCDRIVPVDIYV 156
           VAGT+T KMA  ++ +Y+QMP+P++VI+MG+CA +GG +Y+ +Y VV+G D +VPVD+YV
Sbjct: 74  VAGTVTEKMAPRIKTLYEQMPDPKWVIAMGACAISGGPFYYDAYHVVKGVDLLVPVDVYV 133

Query: 157 PGCPPTAEALIYGILLLQKKIRR 179
           PGCPPT EALI+GIL LQ +I R
Sbjct: 134 PGCPPTPEALIFGILTLQDQIMR 156


>gi|282881432|ref|ZP_06290106.1| NADH-quinone oxidoreductase, B subunit [Prevotella timonensis CRIS
           5C-B1]
 gi|281304658|gb|EFA96744.1| NADH-quinone oxidoreductase, B subunit [Prevotella timonensis CRIS
           5C-B1]
          Length = 231

 Score =  176 bits (447), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 82/161 (50%), Positives = 109/161 (67%), Gaps = 3/161 (1%)

Query: 21  KVDADFSRISSEITHKGFLVT--SVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78
           K +    RI  E+   G  V   S+DQL+ W R  SL  +TF  +CC +E M     RYD
Sbjct: 17  KDNESLERIVDELHEGGVNVVTGSLDQLINWGRANSLWSLTFATSCCGIEFMAVGCARYD 76

Query: 79  LERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137
             RFGF   R SPRQ+D+++ AGT+TNKMA A RR+YD+M EP+YVI++G CA  GG + 
Sbjct: 77  FARFGFEVTRNSPRQADLIMCAGTITNKMAPAFRRLYDEMAEPKYVIAVGGCAISGGPFK 136

Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
            SY VVRG D IVPVD+++PGCPP  EA++YG++ LQ+KI+
Sbjct: 137 SSYHVVRGIDEIVPVDVFIPGCPPRPEAIMYGMMQLQRKIK 177


>gi|163847546|ref|YP_001635590.1| NADH dehydrogenase subunit B [Chloroflexus aurantiacus J-10-fl]
 gi|222525396|ref|YP_002569867.1| NADH dehydrogenase subunit B [Chloroflexus sp. Y-400-fl]
 gi|238065006|sp|A9WED9|NUOB1_CHLAA RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName:
           Full=NADH dehydrogenase I subunit B 1; AltName:
           Full=NDH-1 subunit B 1
 gi|238065008|sp|B9LGT9|NUOB1_CHLSY RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName:
           Full=NADH dehydrogenase I subunit B 1; AltName:
           Full=NDH-1 subunit B 1
 gi|163668835|gb|ABY35201.1| NADH-quinone oxidoreductase, B subunit [Chloroflexus aurantiacus
           J-10-fl]
 gi|222449275|gb|ACM53541.1| NADH-quinone oxidoreductase, B subunit [Chloroflexus sp. Y-400-fl]
          Length = 264

 Score =  176 bits (447), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 82/157 (52%), Positives = 112/157 (71%), Gaps = 1/157 (0%)

Query: 24  ADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFG 83
           A+      E+  +G L+T+V++   W R  S+  M FGLACCA+EMM   + RYD+ RFG
Sbjct: 2   AEIDPTQLELERQGILLTTVNRFYNWGRRSSIWPMAFGLACCAIEMMAFGLSRYDVARFG 61

Query: 84  FAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142
               RASPRQ+D+MIVAGT+T KMA  + R+Y+QM EPRYVISMG+CA  GG +   Y+V
Sbjct: 62  AELFRASPRQADLMIVAGTVTKKMAPQVVRLYNQMAEPRYVISMGACATSGGPFRDGYNV 121

Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           +RG D ++PVD+YVPGCPP  EAL++ ++ LQ++I R
Sbjct: 122 LRGIDLLIPVDVYVPGCPPRPEALLHALMTLQEQIDR 158


>gi|282877800|ref|ZP_06286613.1| NADH-quinone oxidoreductase, B subunit [Prevotella buccalis ATCC
           35310]
 gi|281300116|gb|EFA92472.1| NADH-quinone oxidoreductase, B subunit [Prevotella buccalis ATCC
           35310]
          Length = 231

 Score =  176 bits (447), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 82/161 (50%), Positives = 109/161 (67%), Gaps = 3/161 (1%)

Query: 21  KVDADFSRISSEITHKGFLVT--SVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78
           K +    RI  E+   G  V   S+DQL+ W R  SL  +TF  +CC +E M     RYD
Sbjct: 17  KDNESLERIVDELHEGGVNVVTGSLDQLINWGRANSLWSLTFATSCCGIEFMAVGCARYD 76

Query: 79  LERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137
             RFGF   R SPRQ+D+++ AGT+TNKMA A RR+YD+M EP+YVI++G CA  GG + 
Sbjct: 77  FARFGFEVTRNSPRQADLIMCAGTITNKMAPAFRRLYDEMAEPKYVIAVGGCAISGGPFK 136

Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
            SY VVRG D IVPVD+++PGCPP  EA++YG++ LQ+KI+
Sbjct: 137 SSYHVVRGIDEIVPVDVFIPGCPPRPEAIMYGMMQLQRKIK 177


>gi|307566084|ref|ZP_07628542.1| NADH-quinone oxidoreductase, B subunit [Prevotella amnii CRIS
           21A-A]
 gi|307345272|gb|EFN90651.1| NADH-quinone oxidoreductase, B subunit [Prevotella amnii CRIS
           21A-A]
          Length = 289

 Score =  176 bits (447), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 78/166 (46%), Positives = 117/166 (70%), Gaps = 6/166 (3%)

Query: 14  QSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQAS 73
           + + +L+K+ AD +   + +     ++ ++DQL+ W R+ SL  +TF  +CC +E M   
Sbjct: 17  KDNDTLDKMAADLNDGGTNL-----VLGNLDQLINWGRSNSLWSLTFATSCCGIEFMSVG 71

Query: 74  MPRYDLERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANG 132
             RYD  RFGF   R SPRQ+D+++ AGT+TNKMA AL+R+YD+M EP+YVI++G CA  
Sbjct: 72  CARYDFSRFGFEVTRNSPRQADLIMCAGTITNKMAPALKRLYDEMAEPKYVIAVGGCAIS 131

Query: 133 GGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           GG +  SY V+RG D I+PVD+Y+PGCPP  EA+IYG++ LQ+K++
Sbjct: 132 GGPFKNSYHVMRGIDEIIPVDVYIPGCPPRPEAIIYGMMQLQRKVK 177


>gi|303237657|ref|ZP_07324217.1| putative NADH dehydrogenase subunit B [Prevotella disiens
           FB035-09AN]
 gi|302482109|gb|EFL45144.1| putative NADH dehydrogenase subunit B [Prevotella disiens
           FB035-09AN]
          Length = 288

 Score =  176 bits (447), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 77/161 (47%), Positives = 114/161 (70%), Gaps = 3/161 (1%)

Query: 21  KVDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78
           K +    ++++++   G   ++ ++DQL+ W R+ SL  +TF  +CC +E M     RYD
Sbjct: 17  KDNDTLEQMANDLNDGGTNLVLGNLDQLINWGRSNSLWSLTFATSCCGIEFMAVGCARYD 76

Query: 79  LERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137
             RFGF   R SPRQ+D+++ AGT+TNKMA AL+R+YDQM EP+YVI++G CA  GG + 
Sbjct: 77  FSRFGFEVTRNSPRQADLIMCAGTITNKMAPALKRLYDQMAEPKYVIAVGGCAISGGPFK 136

Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
            SY V+RG D I+PVD+Y+PGCPP  EA+IYG++ LQ+K++
Sbjct: 137 DSYHVMRGIDEIIPVDVYIPGCPPRPEAIIYGMMQLQRKVK 177


>gi|197120286|ref|YP_002140713.1| NADH dehydrogenase I subunit B [Geobacter bemidjiensis Bem]
 gi|238065151|sp|B5EFG2|NUOB_GEOBB RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|197089646|gb|ACH40917.1| NADH dehydrogenase I, B subunit [Geobacter bemidjiensis Bem]
          Length = 170

 Score =  176 bits (447), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 80/147 (54%), Positives = 108/147 (73%), Gaps = 1/147 (0%)

Query: 36  KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDV 95
           +  + TS+D LV WAR  S+  MTFGLACCA+EMM     ++DL+RFG   RASPRQ+D 
Sbjct: 9   ENIITTSLDSLVNWARKSSIWPMTFGLACCAIEMMATGAAKHDLDRFGIIFRASPRQADC 68

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
           +I+AGT+T KM   ++ VY+QMPEP++V++MG+CA  GG +  +YSVV+G D  +PVD+Y
Sbjct: 69  IIIAGTVTKKMLPVIKTVYEQMPEPKWVVAMGACACSGGVFD-TYSVVQGIDEALPVDVY 127

Query: 156 VPGCPPTAEALIYGILLLQKKIRRVGN 182
           +PGCPP  EAL+YG+L LQ KI    N
Sbjct: 128 IPGCPPRPEALLYGLLKLQDKIANERN 154


>gi|322369187|ref|ZP_08043752.1| NADH-quinone oxidoreductase, B subunit [Haladaptatus
           paucihalophilus DX253]
 gi|320550919|gb|EFW92568.1| NADH-quinone oxidoreductase, B subunit [Haladaptatus
           paucihalophilus DX253]
          Length = 211

 Score =  176 bits (447), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 76/160 (47%), Positives = 114/160 (71%), Gaps = 2/160 (1%)

Query: 20  EKVDADF-SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78
           E VD  F S++        F++T  D+ + W R  S+  + FG+ACC++EMM     ++D
Sbjct: 3   EGVDDRFNSKLREAFGASPFILTKFDKFMNWVRGSSMFMLQFGIACCSIEMMHTYAVKHD 62

Query: 79  LERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137
           L+RFG   PRASPRQ+DVMIV GT+ +K A  ++RVYDQMPEP++V++MGSCA  GG + 
Sbjct: 63  LDRFGSGVPRASPRQADVMIVPGTVVSKFAPRMKRVYDQMPEPKFVVNMGSCAISGGPFQ 122

Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
             Y+V++G + ++P+DI+VPGCPP  EAL+YG++ LQ+++
Sbjct: 123 EGYNVIKGAEEVIPIDIHVPGCPPRPEALVYGVVKLQERV 162


>gi|91203915|emb|CAJ71568.1| strongly similar to proton-translocating NADH dehydrogenase I chain
           B [Candidatus Kuenenia stuttgartiensis]
          Length = 155

 Score =  176 bits (447), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 83/149 (55%), Positives = 114/149 (76%), Gaps = 4/149 (2%)

Query: 34  THKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASP 90
           +H G   L T++  +V WAR  SL  M FGLACCA+EMM    PR+DL RFG    R SP
Sbjct: 5   SHLGDNILTTTLTTMVNWARKSSLWPMPFGLACCAIEMMAVVAPRHDLARFGAEVFRFSP 64

Query: 91  RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150
           RQSD+MIVAGTLT KMAS  +++Y+QMPEP++V++MG+CA  GG ++ +YSVV+G ++++
Sbjct: 65  RQSDLMIVAGTLTYKMASVAKKIYEQMPEPKWVVAMGACAVSGGVFN-TYSVVQGLEQVI 123

Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           PVD+Y+PGCPP  EALI+ I+ +QKKI++
Sbjct: 124 PVDVYLPGCPPRPEALIHAIMEIQKKIQK 152


>gi|95928442|ref|ZP_01311190.1| NADH-quinone oxidoreductase, B subunit [Desulfuromonas acetoxidans
           DSM 684]
 gi|95135713|gb|EAT17364.1| NADH-quinone oxidoreductase, B subunit [Desulfuromonas acetoxidans
           DSM 684]
          Length = 179

 Score =  176 bits (447), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 79/151 (52%), Positives = 112/151 (74%), Gaps = 1/151 (0%)

Query: 32  EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPR 91
            +     +  S+D++V W+R+ SL  MTFGLACCA+EMM     R+DL+R G   RASPR
Sbjct: 16  HVLGNNIMTASLDKVVNWSRSRSLWPMTFGLACCAIEMMATGAARFDLDRMGVLFRASPR 75

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
           Q+DV+I+AGT+T+KM   +  VY+QMPEP+YVI+MG+CA+ GG +  +YSV++G D+ +P
Sbjct: 76  QADVIIIAGTVTHKMLPVIETVYEQMPEPKYVIAMGACASSGGVFD-TYSVLQGIDQALP 134

Query: 152 VDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
           VD+Y+PGCPP  E L+YG++ LQ+KI R  N
Sbjct: 135 VDVYIPGCPPRPEGLLYGLMKLQEKIMRERN 165


>gi|148657099|ref|YP_001277304.1| NADH dehydrogenase subunit B [Roseiflexus sp. RS-1]
 gi|238065018|sp|A5UXK1|NUOB1_ROSS1 RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName:
           Full=NADH dehydrogenase I subunit B 1; AltName:
           Full=NDH-1 subunit B 1
 gi|148569209|gb|ABQ91354.1| NADH-quinone oxidoreductase, B subunit [Roseiflexus sp. RS-1]
          Length = 268

 Score =  176 bits (446), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 82/164 (50%), Positives = 115/164 (70%), Gaps = 3/164 (1%)

Query: 24  ADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFG 83
           +D   I  E    G  +T++ +   W R  S+  ++FGLACCA+EMM   + R+DL RFG
Sbjct: 2   SDDREIQLEAEKHGVFLTTMQRFYNWGRRSSIWPLSFGLACCAIEMMATGLARFDLARFG 61

Query: 84  FAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142
               RASPRQ+D+MIVAGT+T KMA  + R+Y+QMPEPRYVISMG+CA  GG +   Y+V
Sbjct: 62  AEMFRASPRQADLMIVAGTVTKKMAPQVVRLYNQMPEPRYVISMGACATSGGPFRDGYNV 121

Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI--RRVGNVK 184
           +RG D ++PVD+Y+PGCPP  EAL++ ++ LQK+I  +R+  V+
Sbjct: 122 LRGIDLLIPVDVYIPGCPPRPEALLHALMTLQKQIDAQRLNQVR 165


>gi|13541946|ref|NP_111634.1| NADH dehydrogenase subunit B [Thermoplasma volcanium GSS1]
          Length = 157

 Score =  176 bits (446), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 85/143 (59%), Positives = 105/143 (73%), Gaps = 1/143 (0%)

Query: 37  GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95
           G + T+V+Q   WAR+ SL  +TFGLACCA+EMM       D+ RFG    R SPRQSD+
Sbjct: 10  GIVTTTVEQAYEWARSNSLWPLTFGLACCAIEMMAIQASDMDISRFGSEIFRNSPRQSDL 69

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
           MIV+GT+T KMA  +RR+YD+MP P+YVI+ G C   GG Y+  YSVV G D++VPVD+Y
Sbjct: 70  MIVSGTVTKKMAPRVRRIYDEMPYPKYVIAQGVCVIQGGPYNQGYSVVLGVDKVVPVDVY 129

Query: 156 VPGCPPTAEALIYGILLLQKKIR 178
           VPGCPPT EAL  GI+LLQKKIR
Sbjct: 130 VPGCPPTPEALTNGIILLQKKIR 152


>gi|284164402|ref|YP_003402681.1| NADH-quinone oxidoreductase, B subunit [Haloterrigena turkmenica
           DSM 5511]
 gi|284014057|gb|ADB60008.1| NADH-quinone oxidoreductase, B subunit [Haloterrigena turkmenica
           DSM 5511]
          Length = 235

 Score =  176 bits (446), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 76/153 (49%), Positives = 107/153 (69%), Gaps = 1/153 (0%)

Query: 27  SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA- 85
           S++        F++T  D+ + W R  S+  + FG+ACC++EMM     ++DL+RFG   
Sbjct: 35  SKLREAFGSTPFILTKFDKFMNWVRGNSMFMLQFGIACCSIEMMHTYAIKHDLDRFGAGV 94

Query: 86  PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRG 145
           PRASPRQ+DVMIV GT+ +K    ++RVYDQMPEP++V+ MGSC   GG +   Y+VV+G
Sbjct: 95  PRASPRQADVMIVPGTIVSKFGPRMKRVYDQMPEPKFVVGMGSCTISGGPFQEGYNVVKG 154

Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
            + I+PVDI+VPGCPP  EAL+YGI  LQ++IR
Sbjct: 155 AEEIIPVDIHVPGCPPRPEALVYGIAKLQERIR 187


>gi|223936528|ref|ZP_03628439.1| NADH-quinone oxidoreductase, B subunit [bacterium Ellin514]
 gi|223894692|gb|EEF61142.1| NADH-quinone oxidoreductase, B subunit [bacterium Ellin514]
          Length = 203

 Score =  176 bits (446), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 79/150 (52%), Positives = 109/150 (72%), Gaps = 1/150 (0%)

Query: 29  ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-R 87
           + +E++ +G   TS++ L  W R  S+  M FGLACCA+EM+  +M RYDL RFG    R
Sbjct: 5   LRNELSKQGIFTTSMEALYNWGRKNSVWPMQFGLACCAIEMIATTMARYDLARFGAEVFR 64

Query: 88  ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCD 147
            SPRQ+D+MIVAGT+T KMA  + R+Y+QMPEP+YVI+MG+CA  GG +   Y+V++G D
Sbjct: 65  PSPRQADLMIVAGTVTKKMAPQVVRLYNQMPEPKYVIAMGACAISGGPFKQGYNVLKGID 124

Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
           R +PVD+++PGCPP  EALI   + LQ+KI
Sbjct: 125 RFIPVDVHIPGCPPRPEALIEAFMALQRKI 154


>gi|150017836|ref|YP_001310090.1| NADH-quinone oxidoreductase, B subunit [Clostridium beijerinckii
           NCIMB 8052]
 gi|238055288|sp|A6LXQ4|NUOB_CLOB8 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|149904301|gb|ABR35134.1| NADH-quinone oxidoreductase, B subunit [Clostridium beijerinckii
           NCIMB 8052]
          Length = 169

 Score =  176 bits (446), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 81/148 (54%), Positives = 109/148 (73%), Gaps = 1/148 (0%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RAS 89
            E   K  ++T +D  + + R  S   +TFGLACCA+EMM A   RYD+ RFG+   RAS
Sbjct: 12  QEQIEKNIILTKLDDTLNYFRAHSFWPLTFGLACCAIEMMAAGGARYDIARFGYEVFRAS 71

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQ+D+MIVAGT+T KMA  ++++YDQMPEP++VI+MGSCA  GG +  SY+VV G D  
Sbjct: 72  PRQADLMIVAGTITEKMAPIVKKIYDQMPEPKWVIAMGSCATSGGPFVDSYNVVPGADTF 131

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKI 177
           +PVD+Y+PGCPP  EALI+G+L L++KI
Sbjct: 132 LPVDVYIPGCPPRPEALIHGLLTLKEKI 159


>gi|282860263|ref|ZP_06269333.1| NADH-quinone oxidoreductase, B subunit [Prevotella bivia
           JCVIHMP010]
 gi|282586937|gb|EFB92172.1| NADH-quinone oxidoreductase, B subunit [Prevotella bivia
           JCVIHMP010]
          Length = 301

 Score =  176 bits (445), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 76/161 (47%), Positives = 114/161 (70%), Gaps = 3/161 (1%)

Query: 21  KVDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78
           K +    +++S++   G   ++ ++DQL+ W R+ SL  +TF  +CC +E M     RYD
Sbjct: 17  KDNDTLDKMASDLNDGGTSLVLGNLDQLINWGRSNSLWSLTFATSCCGIEFMSVGCARYD 76

Query: 79  LERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137
             RFGF   R SPRQ+D+++ AGT+TNKMA AL+R+YD+M EP+YVI++G CA  GG + 
Sbjct: 77  FSRFGFEVTRNSPRQADLIMCAGTITNKMAPALKRLYDEMAEPKYVIAVGGCAISGGPFK 136

Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
            SY V+RG D I+PVD+++PGCPP  EA+IYG++ LQ+K++
Sbjct: 137 NSYHVMRGIDEIIPVDVFIPGCPPRPEAIIYGMMQLQRKVK 177


>gi|300087933|ref|YP_003758455.1| NADH-quinone oxidoreductase subunit B [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
 gi|299527666|gb|ADJ26134.1| NADH-quinone oxidoreductase, B subunit [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
          Length = 203

 Score =  176 bits (445), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 81/157 (51%), Positives = 115/157 (73%), Gaps = 1/157 (0%)

Query: 29  ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-R 87
           ++ +      L+TSVD++V W+R  S+  +TFGLACCA+EMM  +  R+DL RFG    R
Sbjct: 42  LNEDALPPNVLLTSVDKVVNWSRRYSMWPVTFGLACCAIEMMSMAASRFDLARFGMEIFR 101

Query: 88  ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCD 147
           ASPRQ+D+MI+AGTLT KMA  LRR+YDQMP+P++V++MGSC   GG ++ SY+VV G +
Sbjct: 102 ASPRQADLMIIAGTLTWKMAPWLRRIYDQMPDPKWVVAMGSCGISGGLFNDSYAVVPGFN 161

Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           R+VPVD+YVPGCPP  EAL+  I+ +  K+ ++   +
Sbjct: 162 RVVPVDVYVPGCPPRPEALMQAIMDIHAKVDKMSPTR 198


>gi|156742064|ref|YP_001432193.1| NADH dehydrogenase subunit B [Roseiflexus castenholzii DSM 13941]
 gi|238065038|sp|A7NL05|NUOB2_ROSCS RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName:
           Full=NADH dehydrogenase I subunit B 2; AltName:
           Full=NDH-1 subunit B 2
 gi|156233392|gb|ABU58175.1| NADH-quinone oxidoreductase, B subunit [Roseiflexus castenholzii
           DSM 13941]
          Length = 268

 Score =  176 bits (445), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 82/164 (50%), Positives = 116/164 (70%), Gaps = 3/164 (1%)

Query: 24  ADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFG 83
           +D   I  E   +G  +T++ +   W R  S+  ++FGLACCA+EMM   + R+DL RFG
Sbjct: 2   SDDRDIQLEAEKQGVFLTTMQRFYNWGRRSSVWPLSFGLACCAIEMMATGLARFDLARFG 61

Query: 84  FAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142
               RASPRQ+D+MIVAGT+T KMA  + R+Y+QMPEPRYVISMG+CA  GG +   Y+V
Sbjct: 62  AEMFRASPRQADLMIVAGTVTKKMAPQVVRLYNQMPEPRYVISMGACATSGGPFRDGYNV 121

Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI--RRVGNVK 184
           +RG D ++PVD+Y+PGCPP  EAL++ ++ LQK+I  +R+  V+
Sbjct: 122 LRGIDLLIPVDVYIPGCPPRPEALLHALMTLQKQIDAQRLNRVR 165


>gi|148699634|gb|EDL31581.1| NADH dehydrogenase (ubiquinone) Fe-S protein 7, isoform CRA_c [Mus
           musculus]
          Length = 167

 Score =  176 bits (445), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 82/104 (78%), Positives = 92/104 (88%), Gaps = 3/104 (2%)

Query: 81  RFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSY 140
           +    PR+   ++DVMIVAGTLTNKMA ALR+VYDQMPEPRYV+SMGSCANGGGYYHYSY
Sbjct: 62  KLSHLPRS---RADVMIVAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGYYHYSY 118

Query: 141 SVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           SVVRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQ+KI+R   +K
Sbjct: 119 SVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQRKIKREQKLK 162


>gi|253702594|ref|YP_003023783.1| NADH-quinone oxidoreductase, B subunit [Geobacter sp. M21]
 gi|259514665|sp|C6E8N4|NUOB_GEOSM RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|251777444|gb|ACT20025.1| NADH-quinone oxidoreductase, B subunit [Geobacter sp. M21]
          Length = 170

 Score =  176 bits (445), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 79/147 (53%), Positives = 108/147 (73%), Gaps = 1/147 (0%)

Query: 36  KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDV 95
           +  + TS+D LV WAR  S+  MTFGLACCA+EMM     ++DL+RFG   RASPRQ+D 
Sbjct: 9   ENIITTSLDSLVNWARKSSIWPMTFGLACCAIEMMATGAAKHDLDRFGIIFRASPRQADC 68

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
           +I+AGT+T KM   ++ VY+QMPEP++V++MG+CA  GG +  +YSVV+G D  +PVD+Y
Sbjct: 69  IIIAGTVTKKMLPVIKTVYEQMPEPKWVVAMGACACSGGVFD-TYSVVQGIDEALPVDVY 127

Query: 156 VPGCPPTAEALIYGILLLQKKIRRVGN 182
           +PGCPP  EAL+YG++ LQ KI    N
Sbjct: 128 IPGCPPRPEALLYGLMKLQDKIANERN 154


>gi|222479140|ref|YP_002565377.1| NADH-quinone oxidoreductase, B subunit [Halorubrum lacusprofundi
           ATCC 49239]
 gi|222452042|gb|ACM56307.1| NADH-quinone oxidoreductase, B subunit [Halorubrum lacusprofundi
           ATCC 49239]
          Length = 232

 Score =  175 bits (444), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 77/180 (42%), Positives = 117/180 (65%), Gaps = 9/180 (5%)

Query: 7   NQKIISGQSSCSLEKVDADF--------SRISSEITHKGFLVTSVDQLVTWARTGSLMWM 58
           +Q  I+ +S    E  D+          SR+        F++T  D+ + W R  S+  +
Sbjct: 4   DQPFITDESQVVTETRDSRMTGQGDRFNSRLREAFGSSPFILTKFDKFLNWCRGSSMFML 63

Query: 59  TFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQM 117
            FG+ACC++EMM     ++DL+RFG   PRASPRQ+DVMIV GT+ +K A  ++RVYDQM
Sbjct: 64  QFGIACCSIEMMHTYAVKHDLDRFGSGVPRASPRQADVMIVPGTIVSKFAPRMKRVYDQM 123

Query: 118 PEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
           PEP++V+ MGSC   GG +   Y+V++G + ++P+DI+VPGCPP  EAL+YG++ LQ+++
Sbjct: 124 PEPKFVVGMGSCTISGGPFQEGYNVIKGAEEVIPIDIHVPGCPPRPEALVYGVVKLQERV 183


>gi|94970385|ref|YP_592433.1| NADH-quinone oxidoreductase, B subunit [Candidatus Koribacter
           versatilis Ellin345]
 gi|238065024|sp|Q1IL91|NUOB2_ACIBL RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName:
           Full=NADH dehydrogenase I subunit B 2; AltName:
           Full=NDH-1 subunit B 2
 gi|94552435|gb|ABF42359.1| NADH dehydrogenase subunit B [Candidatus Koribacter versatilis
           Ellin345]
          Length = 202

 Score =  175 bits (444), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 83/144 (57%), Positives = 111/144 (77%), Gaps = 2/144 (1%)

Query: 35  HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQS 93
            K FL++SVD +  WAR  S+  MTFGLACCA+EM+ AS  RYD+ RFG    R SPRQS
Sbjct: 9   EKNFLLSSVDYVFNWARKSSVWPMTFGLACCAIEMITASTARYDIARFGSEVFRPSPRQS 68

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD 153
           D+MIVAGT+T KMA  ++R+Y+QMPEP++V++MG+CA+ GG ++ +Y+ ++G D+IVPVD
Sbjct: 69  DLMIVAGTVTLKMAPVVQRIYEQMPEPKWVMAMGACASVGGPFN-TYATLQGVDKIVPVD 127

Query: 154 IYVPGCPPTAEALIYGILLLQKKI 177
           +YV GCPP  E L YG+L LQ KI
Sbjct: 128 VYVVGCPPRPENLFYGLLKLQDKI 151


>gi|258651217|ref|YP_003200373.1| NADH dehydrogenase subunit B [Nakamurella multipartita DSM 44233]
 gi|258554442|gb|ACV77384.1| NADH-quinone oxidoreductase, B subunit [Nakamurella multipartita
           DSM 44233]
          Length = 199

 Score =  175 bits (443), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 84/148 (56%), Positives = 107/148 (72%), Gaps = 2/148 (1%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RAS 89
            E    G L+TSV++LV W R  SL   TFGLACCA+EMM    PRYDL RFG    RAS
Sbjct: 4   EEKLPNGVLLTSVEKLVNWTRKASLFPATFGLACCAIEMMTTGAPRYDLGRFGMEVFRAS 63

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQ+D+MIVAG ++ KMA  LR++YDQM EP++V+SMG CA+ GG ++ +Y++V+G D +
Sbjct: 64  PRQADLMIVAGRVSQKMAPVLRQIYDQMAEPKWVLSMGVCASSGGMFN-NYAIVQGVDHV 122

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKI 177
           VPVD+Y+PGCPP  E LI  IL L  KI
Sbjct: 123 VPVDMYLPGCPPRPEMLIDAILKLHAKI 150


>gi|110667597|ref|YP_657408.1| NADH dehydrogenase, subunit B (ubiquinone) [Haloquadratum walsbyi
           DSM 16790]
 gi|109625344|emb|CAJ51766.1| NADH dehydrogenase, subunit B (ubiquinone) [Haloquadratum walsbyi
           DSM 16790]
          Length = 234

 Score =  175 bits (443), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 76/178 (42%), Positives = 115/178 (64%), Gaps = 2/178 (1%)

Query: 2   GLTTVNQKIISGQSSCSLEKVDADF-SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTF 60
              T + ++ +      +   D  F S++        F++T  DQ + W R  S+  + F
Sbjct: 8   AFVTDDTQVQTDTRDARISGTDERFNSKLREAFGSSPFILTKFDQFMNWVRGSSMFMLQF 67

Query: 61  GLACCAVEMMQASMPRYDLERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119
           G+ACC++EMM     ++DL+RFG   PRASPRQ+DV+IV GT+ +K A  ++RVYDQMPE
Sbjct: 68  GIACCSIEMMHTYAVKHDLDRFGAGVPRASPRQADVIIVPGTIVSKFAPRMKRVYDQMPE 127

Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
           P++V+ MGSC   GG +   Y+V++G + ++PVDI++PGCPP  EAL+YGI  LQ++I
Sbjct: 128 PKFVVGMGSCTVSGGPFQEGYNVIKGAEEVIPVDIHIPGCPPRPEALVYGIAKLQERI 185


>gi|15789834|ref|NP_279658.1| NADH dehydrogenase/oxidoreductase [Halobacterium sp. NRC-1]
 gi|169235555|ref|YP_001688755.1| NADH dehydrogenase-like complex subunit B [Halobacterium salinarum
           R1]
 gi|10580226|gb|AAG19138.1| NADH dehydrogenase/oxidoreductase [Halobacterium sp. NRC-1]
 gi|167726621|emb|CAP13406.1| NADH dehydrogenase-like complex subunit B [Halobacterium salinarum
           R1]
          Length = 235

 Score =  175 bits (443), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 77/177 (43%), Positives = 119/177 (67%), Gaps = 2/177 (1%)

Query: 3   LTTVNQKIISGQSSCSLEKVDADF-SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFG 61
           +T  +  + S + +   + VD  F SR+        F++T  D+ + W R  S+  + FG
Sbjct: 10  ITDTSDPLTSTRDARMGDGVDDRFNSRLREAFGSTPFILTKFDKFMNWVRGSSMFMLQFG 69

Query: 62  LACCAVEMMQASMPRYDLERF-GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           +ACC++EMM     ++DL+RF    PRASPRQ+DVMIV GT+ +K A  ++RVYDQMPEP
Sbjct: 70  IACCSIEMMHTYSVKHDLDRFHAGVPRASPRQADVMIVPGTIVSKFAPRMKRVYDQMPEP 129

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
           ++V++MG+C+  GG +   Y+VV+G + ++PVDI++PGCPP  EAL+YG+  LQ++I
Sbjct: 130 KFVVNMGNCSTSGGPFQEGYNVVKGAEEVIPVDIHIPGCPPRPEALVYGVAKLQERI 186


>gi|326772151|ref|ZP_08231436.1| NADH dehydrogenase I, B subunit [Actinomyces viscosus C505]
 gi|326638284|gb|EGE39185.1| NADH dehydrogenase I, B subunit [Actinomyces viscosus C505]
          Length = 204

 Score =  174 bits (442), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 81/160 (50%), Positives = 120/160 (75%), Gaps = 2/160 (1%)

Query: 21  KVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLE 80
           K +  ++  ++E+ + GFL+T+V++L   A+  S+  +T GLACCA+EMM A  PR+D+ 
Sbjct: 14  KRNDPYAAAAAEVDNPGFLLTTVEKLAGLAQARSMWPVTMGLACCAIEMMAAGTPRFDMA 73

Query: 81  RFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS 139
           RFG+   RASPR +DVMIV+G +++KMA  +R VYD MPEP++VISMG+CA+ GG ++ +
Sbjct: 74  RFGWEVFRASPRHADVMIVSGRVSHKMAPIVRNVYDSMPEPKWVISMGACASSGGIFN-N 132

Query: 140 YSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           Y+VV+GCD IVPVDIY+PGCPP  E L+  +L L ++I +
Sbjct: 133 YAVVQGCDHIVPVDIYLPGCPPRPEMLLNAMLELTRQIEK 172


>gi|159901492|ref|YP_001547739.1| NADH dehydrogenase subunit B [Herpetosiphon aurantiacus ATCC 23779]
 gi|238065032|sp|A9B478|NUOB2_HERA2 RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName:
           Full=NADH dehydrogenase I subunit B 2; AltName:
           Full=NDH-1 subunit B 2
 gi|159894531|gb|ABX07611.1| NADH-quinone oxidoreductase, B subunit [Herpetosiphon aurantiacus
           ATCC 23779]
          Length = 250

 Score =  174 bits (442), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 80/147 (54%), Positives = 108/147 (73%), Gaps = 1/147 (0%)

Query: 32  EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASP 90
           ++  +G L T++++L  W R  S+  M FGLACCA+EM+ A+  RYD+ RFG    RASP
Sbjct: 9   DLEQQGVLFTTINKLYNWGRRSSVWPMQFGLACCAIEMIAAAASRYDISRFGSELFRASP 68

Query: 91  RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150
           RQ+DVMIVAGT+T KM   + R+++QMPEPRYVISMG+CA  GG +   Y+VVRG D  V
Sbjct: 69  RQADVMIVAGTVTKKMVPQVVRLFNQMPEPRYVISMGACATSGGPFRDGYNVVRGVDLYV 128

Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKI 177
           PVD+Y+PGCPP  EAL++ ++ LQ +I
Sbjct: 129 PVDVYIPGCPPRPEALLHALMTLQAQI 155


>gi|257387965|ref|YP_003177738.1| NADH-quinone oxidoreductase subunit beta [Halomicrobium mukohataei
           DSM 12286]
 gi|257170272|gb|ACV48031.1| NADH-quinone oxidoreductase, B subunit [Halomicrobium mukohataei
           DSM 12286]
          Length = 229

 Score =  174 bits (442), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 74/152 (48%), Positives = 108/152 (71%), Gaps = 1/152 (0%)

Query: 27  SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA- 85
           S++        F++T  D+ + W R  S+  + FG+ACC++EMM     ++DL+RFG   
Sbjct: 29  SKLREAFGSTPFILTKFDKFMNWVRGSSMFMLQFGIACCSIEMMHTYAVKHDLDRFGAGV 88

Query: 86  PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRG 145
           PRASPRQ+DV+IV GT+ +K A  ++RVYDQMPEP++V+SMGSC   GG +   Y+V++G
Sbjct: 89  PRASPRQADVIIVPGTIVSKFAPRMKRVYDQMPEPKFVVSMGSCTISGGPFQEGYNVIKG 148

Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
            + ++PVDI+VPGCPP  EALIYG+  LQ++I
Sbjct: 149 AEEVIPVDIHVPGCPPRPEALIYGVAKLQERI 180


>gi|148266253|ref|YP_001232959.1| NADH-quinone oxidoreductase, B subunit [Geobacter uraniireducens
           Rf4]
 gi|238065155|sp|A5G9B8|NUOB_GEOUR RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|146399753|gb|ABQ28386.1| NADH dehydrogenase subunit B [Geobacter uraniireducens Rf4]
          Length = 170

 Score =  174 bits (442), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 80/145 (55%), Positives = 107/145 (73%), Gaps = 1/145 (0%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
            +  S+D LV WAR  S+  MTFGLACCA+EMM     ++DL+RFG   RASPRQSD +I
Sbjct: 11  IVTASLDGLVNWARKSSIWPMTFGLACCAIEMMATGAAKHDLDRFGIIFRASPRQSDCII 70

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           +AGT+T KM   ++ VY+QMPEP++VI+MG+CA  GG +  +YSVV+G D  +PVD+Y+P
Sbjct: 71  IAGTVTKKMLPVIKTVYEQMPEPKWVIAMGACACSGGVFD-TYSVVQGVDEALPVDVYIP 129

Query: 158 GCPPTAEALIYGILLLQKKIRRVGN 182
           GCPP  EAL+YG++ LQ KI +  N
Sbjct: 130 GCPPRPEALLYGLMKLQDKIGKERN 154


>gi|76801790|ref|YP_326798.1| NADH dehydrogenase-like complex, subunit B [Natronomonas pharaonis
           DSM 2160]
 gi|76557655|emb|CAI49238.1| NADH dehydrogenase-like complex, subunit B [Natronomonas pharaonis
           DSM 2160]
          Length = 227

 Score =  174 bits (441), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 79/169 (46%), Positives = 115/169 (68%), Gaps = 2/169 (1%)

Query: 12  SGQSSCSLEKVDADF-SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMM 70
           S Q +   + VD  F S++        F++T  D+ + W R  S+  + FG+ACC++EM+
Sbjct: 11  STQQARMGDGVDDRFNSKLREAFGSTPFILTKFDKFMNWVRGNSMFMLQFGIACCSIEMI 70

Query: 71  QASMPRYDLERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSC 129
                ++DL+RFG   PRASPRQ+DV+IV GT+ +K A  ++RVYDQMPEP++V+ MGSC
Sbjct: 71  HTYAIKHDLDRFGAGVPRASPRQADVIIVPGTIVSKFAPRMKRVYDQMPEPKFVVGMGSC 130

Query: 130 ANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
              GG +   Y+V++G + ++PVDI+VPGCPP  EALIYGI  LQ++IR
Sbjct: 131 TISGGPFQEGYNVIKGAEEVIPVDIHVPGCPPRPEALIYGIAKLQERIR 179


>gi|222053571|ref|YP_002535933.1| NADH-quinone oxidoreductase, B subunit [Geobacter sp. FRC-32]
 gi|238065153|sp|B9LZL8|NUOB_GEOSF RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|221562860|gb|ACM18832.1| NADH-quinone oxidoreductase, B subunit [Geobacter sp. FRC-32]
          Length = 170

 Score =  174 bits (441), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 81/145 (55%), Positives = 107/145 (73%), Gaps = 1/145 (0%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
            +  S+D LV WAR  S+  MTFGLACCA+EMM     ++DL+RFG   RASPRQ+D +I
Sbjct: 11  IVTASLDGLVNWARKTSIWPMTFGLACCAIEMMATGAAKHDLDRFGIIFRASPRQADCII 70

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           +AGT+T KM   ++ VY+QMPEP++VI+MG+CA  GG +  +YSVV+G D  +PVD+YVP
Sbjct: 71  IAGTVTKKMLPVIKTVYEQMPEPKWVIAMGACACSGGVFD-TYSVVQGIDEALPVDVYVP 129

Query: 158 GCPPTAEALIYGILLLQKKIRRVGN 182
           GCPP  EAL+YGI+ LQ KI +  N
Sbjct: 130 GCPPRPEALLYGIMKLQDKIGKERN 154


>gi|257051791|ref|YP_003129624.1| NADH-quinone oxidoreductase, B subunit [Halorhabdus utahensis DSM
           12940]
 gi|256690554|gb|ACV10891.1| NADH-quinone oxidoreductase, B subunit [Halorhabdus utahensis DSM
           12940]
          Length = 231

 Score =  174 bits (441), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 78/160 (48%), Positives = 110/160 (68%), Gaps = 2/160 (1%)

Query: 20  EKVDADF-SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78
           E VD  F SR+   +    F++T  DQ + WAR  S+  + FG+ACC++EMM     ++D
Sbjct: 23  EGVDDRFNSRLREALGSTPFILTKFDQFMNWARGSSMFMLQFGIACCSIEMMHTYSVKHD 82

Query: 79  LERF-GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137
           L+RF    PRASPRQ+DVMIV GT+ +K A  ++RVYDQ+PEP++ I MGSC   GG + 
Sbjct: 83  LDRFHAGVPRASPRQADVMIVPGTIVSKFAPRMKRVYDQVPEPKFTIGMGSCTISGGPFQ 142

Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
             Y+VV+G + ++P+DI +PGCPP  EALIYG+  LQ++I
Sbjct: 143 EGYNVVKGAEEVIPIDIQIPGCPPRPEALIYGVAKLQERI 182


>gi|323345257|ref|ZP_08085480.1| NADH-quinone oxidoreductase subunit B [Prevotella oralis ATCC
           33269]
 gi|323093371|gb|EFZ35949.1| NADH-quinone oxidoreductase subunit B [Prevotella oralis ATCC
           33269]
          Length = 242

 Score =  174 bits (441), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 78/161 (48%), Positives = 111/161 (68%), Gaps = 3/161 (1%)

Query: 21  KVDADFSRISSEITHKGFLVT--SVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78
           K ++   +I  E+   G  V   S+DQ++ W R+ SL  +TF  +CC +E M     RYD
Sbjct: 17  KDNSSLEQIVDELHEGGVNVVTGSLDQMINWGRSNSLWSLTFATSCCGIEFMAVGCARYD 76

Query: 79  LERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137
             RFGF   R SPRQ+D+++ AGT+TNKMA A +R+YD+M EP+YVI++G CA  GG + 
Sbjct: 77  FARFGFEVTRNSPRQADLIMCAGTITNKMAPAFKRLYDEMAEPKYVIAVGGCAISGGPFK 136

Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
            SY VVRG D IVPVD+++PGCPP  EA++YG++ LQ+K++
Sbjct: 137 SSYHVVRGIDEIVPVDVFIPGCPPRPEAIMYGMMQLQRKVK 177


>gi|117927477|ref|YP_872028.1| NADH dehydrogenase subunit B [Acidothermus cellulolyticus 11B]
 gi|238065066|sp|A0LRI2|NUOB_ACIC1 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|117647940|gb|ABK52042.1| NADH dehydrogenase subunit B [Acidothermus cellulolyticus 11B]
          Length = 184

 Score =  174 bits (441), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 80/143 (55%), Positives = 109/143 (76%), Gaps = 2/143 (1%)

Query: 37  GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95
           GFL+T+V++ V W R  SL   TFGLACCA+EMM     RYDL RFG    RASPRQ+D+
Sbjct: 10  GFLLTTVEKAVGWVRKSSLWPATFGLACCAIEMMATGAGRYDLARFGMEVFRASPRQADL 69

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
           MIVAG ++ KMA  LR++YDQMPEP++V++MG CA+ GG ++ +Y++V+G D +VPVD+Y
Sbjct: 70  MIVAGRVSQKMAPVLRQIYDQMPEPKWVLAMGVCASSGGMFN-NYAIVQGVDHVVPVDMY 128

Query: 156 VPGCPPTAEALIYGILLLQKKIR 178
           +PGCPP  E L++ IL L +KI+
Sbjct: 129 LPGCPPRPEMLMHAILELHEKIK 151


>gi|325067538|ref|ZP_08126211.1| NADH-quinone oxidoreductase, B subunit [Actinomyces oris K20]
          Length = 207

 Score =  174 bits (441), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 81/160 (50%), Positives = 119/160 (74%), Gaps = 2/160 (1%)

Query: 21  KVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLE 80
           K +  ++  ++E+   GFL+T+V++L   A+  S+  +T GLACCA+EMM A  PR+D+ 
Sbjct: 17  KRNDPYAAAAAEVDSPGFLLTTVEKLAGLAQARSMWPVTMGLACCAIEMMAAGTPRFDMA 76

Query: 81  RFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS 139
           RFG+   RASPR +DVMIV+G +++KMA  +R VYD MPEP++VISMG+CA+ GG ++ +
Sbjct: 77  RFGWEVFRASPRHADVMIVSGRVSHKMAPIVRNVYDSMPEPKWVISMGACASSGGIFN-N 135

Query: 140 YSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           Y+VV+GCD IVPVDIY+PGCPP  E L+  +L L ++I +
Sbjct: 136 YAVVQGCDHIVPVDIYLPGCPPRPEMLLNAMLELTRQIEK 175


>gi|281424343|ref|ZP_06255256.1| NADH dehydrogenase I, B subunit [Prevotella oris F0302]
 gi|281401612|gb|EFB32443.1| NADH dehydrogenase I, B subunit [Prevotella oris F0302]
          Length = 240

 Score =  174 bits (440), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 75/161 (46%), Positives = 111/161 (68%), Gaps = 3/161 (1%)

Query: 21  KVDADFSRISSEITHKGF--LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78
           K +    +I+ E+   G   +V S+DQ + W R+ SL  +TFG +CC +E M     RYD
Sbjct: 17  KDNDSLEKITQELNEGGVNVIVGSLDQAINWGRSNSLWSLTFGTSCCGIEFMAVGCARYD 76

Query: 79  LERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137
             RFGF   R SPRQ+D+++ AGT+TNKMA   +R+YD++ EP+YV+++G C   GG + 
Sbjct: 77  FSRFGFEVTRNSPRQADLIMCAGTITNKMAPVFKRLYDEIAEPKYVVAVGGCTISGGPFK 136

Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
            SY+VVRG D +VPVD+Y+PGCPP  EA++YG++ LQ+K++
Sbjct: 137 KSYNVVRGIDELVPVDVYIPGCPPRPEAILYGMMQLQRKVK 177


>gi|322370548|ref|ZP_08045106.1| NADH-quinone oxidoreductase, B subunit [Haladaptatus
           paucihalophilus DX253]
 gi|320549965|gb|EFW91621.1| NADH-quinone oxidoreductase, B subunit [Haladaptatus
           paucihalophilus DX253]
          Length = 220

 Score =  174 bits (440), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 75/152 (49%), Positives = 108/152 (71%), Gaps = 1/152 (0%)

Query: 27  SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA- 85
           S++   +    F++T  D  + W R  S+  + FG+ACC++EMM     ++DL+RFG   
Sbjct: 20  SKLREALGTSPFILTKFDAFMNWVRGSSMFMLQFGIACCSIEMMHTYAVKHDLDRFGAGV 79

Query: 86  PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRG 145
           PRASPRQ+DV+IV GT+ +K A  ++RVYDQMPEP++V+SMGSC   GG +   Y+V++G
Sbjct: 80  PRASPRQADVIIVPGTIVSKFAPRMKRVYDQMPEPKFVVSMGSCTCSGGPFQQGYNVIKG 139

Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
            + ++PVDI+VPGCPP  EALIYGI  LQ++I
Sbjct: 140 AEEVIPVDIHVPGCPPRPEALIYGIAKLQERI 171


>gi|269926648|ref|YP_003323271.1| NADH-quinone oxidoreductase, B subunit [Thermobaculum terrenum ATCC
           BAA-798]
 gi|269790308|gb|ACZ42449.1| NADH-quinone oxidoreductase, B subunit [Thermobaculum terrenum ATCC
           BAA-798]
          Length = 175

 Score =  174 bits (440), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 88/148 (59%), Positives = 110/148 (74%), Gaps = 3/148 (2%)

Query: 34  THKGFLVTSVDQLV-TWARTGSLMWMTFGLACCAVEMMQASMPRYD-LERFGFAPRASPR 91
             +G L+ +  + +  WAR  SL  MTFGLACCA+EMM AS   YD +ER G   R SPR
Sbjct: 9   NKRGNLLEATQRAIFGWARKSSLWPMTFGLACCAIEMMSASAANYDVMERSGMLFRPSPR 68

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
           QSD+MIVAG++T KMA  LRR+YDQMP+P++VISMGSCA+ GG Y  +YS ++G D++VP
Sbjct: 69  QSDLMIVAGSVTLKMAPVLRRLYDQMPDPKWVISMGSCASAGGPYP-TYSHLQGVDKVVP 127

Query: 152 VDIYVPGCPPTAEALIYGILLLQKKIRR 179
           VD+YVPGCPP  EAL YGIL LQ  I+R
Sbjct: 128 VDVYVPGCPPVPEALFYGILQLQGMIQR 155


>gi|299140925|ref|ZP_07034063.1| proton-translocating NADH-quinone oxidoreductase, B subunit
           [Prevotella oris C735]
 gi|298577891|gb|EFI49759.1| proton-translocating NADH-quinone oxidoreductase, B subunit
           [Prevotella oris C735]
          Length = 247

 Score =  174 bits (440), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 75/161 (46%), Positives = 111/161 (68%), Gaps = 3/161 (1%)

Query: 21  KVDADFSRISSEITHKGF--LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78
           K +    +I+ E+   G   +V S+DQ + W R+ SL  +TFG +CC +E M     RYD
Sbjct: 24  KDNDSLEKITQELNEGGVNVIVGSLDQAINWGRSNSLWSLTFGTSCCGIEFMAVGCARYD 83

Query: 79  LERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137
             RFGF   R SPRQ+D+++ AGT+TNKMA   +R+YD++ EP+YV+++G C   GG + 
Sbjct: 84  FSRFGFEVTRNSPRQADLIMCAGTITNKMAPVFKRLYDEIAEPKYVVAVGGCTISGGPFK 143

Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
            SY+VVRG D +VPVD+Y+PGCPP  EA++YG++ LQ+K++
Sbjct: 144 KSYNVVRGIDELVPVDVYIPGCPPRPEAILYGMMQLQRKVK 184


>gi|228930306|ref|ZP_04093311.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
           [Bacillus thuringiensis serovar pondicheriensis BGSC
           4BA1]
 gi|228982015|ref|ZP_04142308.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
           [Bacillus thuringiensis Bt407]
 gi|229020517|ref|ZP_04177264.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
           [Bacillus cereus AH1273]
 gi|229026735|ref|ZP_04183071.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
           [Bacillus cereus AH1272]
 gi|229033931|ref|ZP_04188885.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
           [Bacillus cereus AH1271]
 gi|229158859|ref|ZP_04286917.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
           [Bacillus cereus ATCC 4342]
 gi|229164245|ref|ZP_04292178.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
           [Bacillus cereus R309803]
 gi|229187525|ref|ZP_04314665.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
           [Bacillus cereus BGSC 6E1]
 gi|229193551|ref|ZP_04320495.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
           [Bacillus cereus ATCC 10876]
 gi|228589856|gb|EEK47731.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
           [Bacillus cereus ATCC 10876]
 gi|228595892|gb|EEK53572.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
           [Bacillus cereus BGSC 6E1]
 gi|228619185|gb|EEK76078.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
           [Bacillus cereus R309803]
 gi|228624843|gb|EEK81612.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
           [Bacillus cereus ATCC 4342]
 gi|228728357|gb|EEL79379.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
           [Bacillus cereus AH1271]
 gi|228734566|gb|EEL85224.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
           [Bacillus cereus AH1272]
 gi|228740788|gb|EEL91039.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
           [Bacillus cereus AH1273]
 gi|228777679|gb|EEM25953.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
           [Bacillus thuringiensis Bt407]
 gi|228829349|gb|EEM74981.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
           [Bacillus thuringiensis serovar pondicheriensis BGSC
           4BA1]
          Length = 133

 Score =  174 bits (440), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 81/121 (66%), Positives = 97/121 (80%)

Query: 58  MTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQM 117
           MTFGLACCA+EMM      YDL+RFG   R SPRQSDVMIV+GT+T KMA  +RR+YDQM
Sbjct: 1   MTFGLACCAIEMMGVGSSHYDLDRFGSFFRTSPRQSDVMIVSGTVTKKMAPIVRRLYDQM 60

Query: 118 PEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
           PEP++VI+MGSCA  GG Y  SY+VV+G D+IVPVD+Y+PGCPP   ALIYGI  L++KI
Sbjct: 61  PEPKWVIAMGSCATAGGPYVNSYAVVKGVDQIVPVDVYIPGCPPNPAALIYGINKLKEKI 120

Query: 178 R 178
           R
Sbjct: 121 R 121


>gi|225874130|ref|YP_002755589.1| NADH dehydrogenase I, B subunit [Acidobacterium capsulatum ATCC
           51196]
 gi|225792992|gb|ACO33082.1| NADH dehydrogenase I, B subunit [Acidobacterium capsulatum ATCC
           51196]
          Length = 216

 Score =  174 bits (440), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 77/147 (52%), Positives = 109/147 (74%), Gaps = 1/147 (0%)

Query: 32  EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASP 90
           E++  G   T++++L  W R  S+  +TFGLACCA+EM+  +M RYDL RFG    R SP
Sbjct: 17  ELSKNGVFTTTLEELYNWGRRSSVWPLTFGLACCAIEMIATTMARYDLARFGAEVFRPSP 76

Query: 91  RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150
           RQ+D++IV+GT+T KMA  + R+Y+QMPEP+YVI+MG+CA  GG +   Y+V++G DR +
Sbjct: 77  RQADLIIVSGTVTKKMAPQVVRLYNQMPEPKYVIAMGACAISGGPFRDGYNVLKGIDRYI 136

Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKI 177
           PVD+++PGCPP  EALI+  + LQKKI
Sbjct: 137 PVDVHIPGCPPRPEALIHAFMTLQKKI 163


>gi|189426186|ref|YP_001953363.1| NADH-quinone oxidoreductase, B subunit [Geobacter lovleyi SZ]
 gi|238065152|sp|B3E9W8|NUOB_GEOLS RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|189422445|gb|ACD96843.1| NADH-quinone oxidoreductase, B subunit [Geobacter lovleyi SZ]
          Length = 169

 Score =  174 bits (440), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 80/143 (55%), Positives = 106/143 (74%), Gaps = 1/143 (0%)

Query: 40  VTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVA 99
           VTS+D+LV W R  S+  MTFGLACCA+EMM       DL+RFG   RASPRQ+D +I+A
Sbjct: 13  VTSLDKLVNWVRKSSIWPMTFGLACCAIEMMATGASHNDLDRFGIIFRASPRQADCIIIA 72

Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGC 159
           GT+T KM   ++ VY+QMPEP++VI+MG+CA  GG +  +YSVV+G D  +PVD+Y+PGC
Sbjct: 73  GTVTKKMLPVIQTVYEQMPEPKWVIAMGACACSGGIFD-TYSVVQGIDEALPVDVYIPGC 131

Query: 160 PPTAEALIYGILLLQKKIRRVGN 182
           PP  EAL+YG++ LQ KI +  N
Sbjct: 132 PPRPEALLYGLMKLQDKIMQESN 154


>gi|329944203|ref|ZP_08292462.1| NADH-quinone oxidoreductase subunit 6 [Actinomyces sp. oral taxon
           170 str. F0386]
 gi|328530933|gb|EGF57789.1| NADH-quinone oxidoreductase subunit 6 [Actinomyces sp. oral taxon
           170 str. F0386]
          Length = 204

 Score =  173 bits (439), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 81/160 (50%), Positives = 119/160 (74%), Gaps = 2/160 (1%)

Query: 21  KVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLE 80
           K +  ++  ++E+   GFL+T+V++L   A+  S+  +T GLACCA+EMM A  PR+D+ 
Sbjct: 14  KRNDPYAAAAAEVDSPGFLLTTVERLAGLAQARSMWPVTMGLACCAIEMMAAGTPRFDMA 73

Query: 81  RFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS 139
           RFG+   RASPR +DVMIV+G +++KMA  +R VYD MPEP++VISMG+CA+ GG ++ +
Sbjct: 74  RFGWEVFRASPRHADVMIVSGRVSHKMAPIVRNVYDSMPEPKWVISMGACASSGGIFN-N 132

Query: 140 YSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           Y+VV+GCD IVPVDIY+PGCPP  E L+  +L L ++I +
Sbjct: 133 YAVVQGCDHIVPVDIYLPGCPPRPEMLLNAMLELTRQIEK 172


>gi|288801144|ref|ZP_06406600.1| NADH dehydrogenase I, B/C/D subunit protein [Prevotella sp. oral
           taxon 299 str. F0039]
 gi|288332078|gb|EFC70560.1| NADH dehydrogenase I, B/C/D subunit protein [Prevotella sp. oral
           taxon 299 str. F0039]
          Length = 210

 Score =  173 bits (439), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 79/161 (49%), Positives = 110/161 (68%), Gaps = 3/161 (1%)

Query: 21  KVDADFSRISSEITHKGFLVT--SVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78
           K +    +I+ E+   G  V   S+DQL+ W R+ SL  +TF  +CC +E M     RYD
Sbjct: 17  KDNETLEQIAQELHEGGVNVVTGSLDQLINWGRSNSLWSLTFATSCCGIEFMSVGCARYD 76

Query: 79  LERFGF-APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137
             RFGF   R SPRQ+D+++ AGT+TNKMA   +R+YD+M EP+Y+I++G CA  GG + 
Sbjct: 77  FARFGFEVTRNSPRQADLIMCAGTITNKMAPVFKRLYDEMAEPKYIIAIGGCAISGGPFK 136

Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
            SY VVRG + IVPVD+YVPGCPP  EA++YG++ LQ+KI+
Sbjct: 137 ASYHVVRGINEIVPVDVYVPGCPPRPEAILYGMMQLQRKIK 177


>gi|167630265|ref|YP_001680764.1| proton-translocating NADH-ubiquinone oxidoreductase, chain b
           [Heliobacterium modesticaldum Ice1]
 gi|238065157|sp|B0TH78|NUOB_HELMI RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|167593005|gb|ABZ84753.1| proton-translocating NADH-ubiquinone oxidoreductase, chain b
           [Heliobacterium modesticaldum Ice1]
          Length = 175

 Score =  173 bits (439), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 82/168 (48%), Positives = 118/168 (70%), Gaps = 5/168 (2%)

Query: 21  KVDADFSRISS----EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPR 76
           ++D +   +S     E+  K  ++TS++ +  WAR  SL  ++ GLACCA+EMM     R
Sbjct: 2   EIDKNVDTLSEGQVDELIKKNIIMTSLEAVFNWARGNSLWPLSSGLACCAIEMMATGASR 61

Query: 77  YDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY 135
           +D+ RFG+   R SPRQ+D++I+AGTLT KMA A++RVY+QMPEP+++I+MGSCA  GG 
Sbjct: 62  FDMARFGYEVFRPSPRQADLIIIAGTLTWKMAPAIQRVYEQMPEPKWIIAMGSCACTGGP 121

Query: 136 YHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           +  SY+VV G D+++PVD+YVPGCPP  EAL+ G L L+ KI+    V
Sbjct: 122 FADSYAVVPGVDKVIPVDVYVPGCPPRPEALLDGFLKLKAKIQNPAKV 169


>gi|301167766|emb|CBW27350.1| NADH dehydrogenase I chain B [Bacteriovorax marinus SJ]
          Length = 168

 Score =  173 bits (439), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 83/141 (58%), Positives = 105/141 (74%), Gaps = 2/141 (1%)

Query: 39  LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APRASPRQSDVMI 97
           ++  +D    W R  SL  MTFGLACCA+EMM     +YDLERFG  A  A+PR++D+MI
Sbjct: 14  VLMKLDDFFNWGRKNSLWPMTFGLACCAIEMMATGASKYDLERFGCGAFMATPRRADLMI 73

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGG-YYHYSYSVVRGCDRIVPVDIYV 156
           VAGT+T KMA  ++ +Y+QM EP+YVISMGSCAN GG Y+ + Y V++G D IVPVD+YV
Sbjct: 74  VAGTVTLKMAPRIKTLYEQMAEPKYVISMGSCANKGGPYWQHGYHVLKGVDEIVPVDVYV 133

Query: 157 PGCPPTAEALIYGILLLQKKI 177
           PGCPP  EALI G++ LQKKI
Sbjct: 134 PGCPPRPEALIEGLMTLQKKI 154


>gi|57234306|ref|YP_181649.1| proton-translocating NADH-quinone oxidoreductase, B subunit
           [Dehalococcoides ethenogenes 195]
 gi|123618656|sp|Q3Z800|NUOB_DEHE1 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|57224754|gb|AAW39811.1| proton-translocating NADH-quinone oxidoreductase, B subunit
           [Dehalococcoides ethenogenes 195]
          Length = 200

 Score =  173 bits (439), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 84/157 (53%), Positives = 114/157 (72%), Gaps = 1/157 (0%)

Query: 29  ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-R 87
           ++SE    G  VTSV++++ W+R  SL  + FGLACCA+EMM  +  R+DL RFG    R
Sbjct: 43  LNSEEPPPGVFVTSVEKVLNWSRHYSLWPVMFGLACCAIEMMCMAASRWDLARFGMDIFR 102

Query: 88  ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCD 147
           ASPRQ+D+MIVAGTLT KMA  L+R+YDQMPEP++V++MG+C   GG +  SYSVV G +
Sbjct: 103 ASPRQADLMIVAGTLTWKMAPWLKRIYDQMPEPKWVLAMGACGTSGGLFRDSYSVVPGFN 162

Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
            +VPVD+YVPGCPP  EAL+  I+ + +KI +   +K
Sbjct: 163 MVVPVDVYVPGCPPRPEALLRAIMDIHEKIDKTRIIK 199


>gi|78224544|ref|YP_386291.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit [Geobacter
           metallireducens GS-15]
 gi|123570771|sp|Q39QA8|NUOB_GEOMG RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|78195799|gb|ABB33566.1| NADH dehydrogenase subunit B [Geobacter metallireducens GS-15]
          Length = 170

 Score =  173 bits (439), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 79/145 (54%), Positives = 106/145 (73%), Gaps = 1/145 (0%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           F+  S+D LV WAR  S+  MTFGLACCA+EMM       DL+RFG   RASPRQ+D +I
Sbjct: 11  FITASLDGLVNWARKSSIWPMTFGLACCAIEMMATGASHNDLDRFGIIFRASPRQADCII 70

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           +AGT+T KM   ++ VY+QMPEP++V++MG+CA  GG +  +YSVV+G D  +PVD+Y+P
Sbjct: 71  IAGTVTKKMLPVIQTVYEQMPEPKWVVAMGACACSGGVFD-TYSVVQGIDEALPVDVYIP 129

Query: 158 GCPPTAEALIYGILLLQKKIRRVGN 182
           GCPP  EAL+YG++ LQ KI +  N
Sbjct: 130 GCPPRPEALLYGLIKLQDKIMKDKN 154


>gi|282891849|ref|ZP_06300329.1| hypothetical protein pah_c198o042 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281498282|gb|EFB40621.1| hypothetical protein pah_c198o042 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 157

 Score =  173 bits (439), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 84/142 (59%), Positives = 108/142 (76%), Gaps = 2/142 (1%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVM 96
           F+V  + +L+ WAR+ SL    FGLACCA+EMM A+  RYD+ RFG    RASPRQSDVM
Sbjct: 11  FIVAPLQKLIDWARSNSLWPAQFGLACCAIEMMSAAASRYDMARFGMEVFRASPRQSDVM 70

Query: 97  IVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV 156
           IVAG ++ KMA  LR +Y+QM EP++VI+MG CA+ GG Y+ +Y+V+ G D+IVPVD+YV
Sbjct: 71  IVAGRVSQKMAPVLRTIYEQMLEPKWVIAMGDCASTGGVYN-NYAVIPGVDQIVPVDVYV 129

Query: 157 PGCPPTAEALIYGILLLQKKIR 178
            GCPP  EALI G++LLQ KIR
Sbjct: 130 AGCPPRPEALIDGLILLQNKIR 151


>gi|229007607|ref|ZP_04165201.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
           [Bacillus mycoides Rock1-4]
 gi|229087789|ref|ZP_04219909.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
           [Bacillus cereus Rock3-44]
 gi|228695517|gb|EEL48382.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
           [Bacillus cereus Rock3-44]
 gi|228753618|gb|EEM03062.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
           [Bacillus mycoides Rock1-4]
          Length = 133

 Score =  173 bits (439), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 81/121 (66%), Positives = 97/121 (80%)

Query: 58  MTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQM 117
           MTFGLACCA+EMM      YDL+RFG   R SPRQSDVMIV+GT+T KMA  +RR+YDQM
Sbjct: 1   MTFGLACCAIEMMGVGSSHYDLDRFGSFFRTSPRQSDVMIVSGTVTKKMAPIVRRLYDQM 60

Query: 118 PEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
           PEP++VI+MGSCA  GG Y  SY+VV+G D+IVPVD+Y+PGCPP   ALIYGI  L++KI
Sbjct: 61  PEPKWVIAMGSCATAGGPYVNSYAVVKGVDQIVPVDVYIPGCPPNPAALIYGINKLKEKI 120

Query: 178 R 178
           R
Sbjct: 121 R 121


>gi|229064950|ref|ZP_04200248.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
           [Bacillus cereus AH603]
 gi|229136115|ref|ZP_04264868.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
           [Bacillus cereus BDRD-ST196]
 gi|229170007|ref|ZP_04297699.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
           [Bacillus cereus AH621]
 gi|228613432|gb|EEK70565.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
           [Bacillus cereus AH621]
 gi|228647274|gb|EEL03356.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
           [Bacillus cereus BDRD-ST196]
 gi|228716251|gb|EEL67963.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
           [Bacillus cereus AH603]
          Length = 133

 Score =  173 bits (439), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 81/121 (66%), Positives = 97/121 (80%)

Query: 58  MTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQM 117
           MTFGLACCA+EMM      YDL+RFG   R SPRQSDVMIV+GT+T KMA  +RR+YDQM
Sbjct: 1   MTFGLACCAIEMMGVGSSHYDLDRFGSFFRTSPRQSDVMIVSGTVTKKMAPIVRRLYDQM 60

Query: 118 PEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
           PEP++VI+MGSCA  GG Y  SY+VV+G D+IVPVD+Y+PGCPP   ALIYGI  L++KI
Sbjct: 61  PEPKWVIAMGSCATAGGPYVNSYAVVKGVDQIVPVDVYIPGCPPNPAALIYGINKLKEKI 120

Query: 178 R 178
           R
Sbjct: 121 R 121


>gi|269794074|ref|YP_003313529.1| NADH dehydrogenase subunit B [Sanguibacter keddieii DSM 10542]
 gi|269096259|gb|ACZ20695.1| NADH dehydrogenase subunit B [Sanguibacter keddieii DSM 10542]
          Length = 183

 Score =  173 bits (439), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 84/148 (56%), Positives = 111/148 (75%), Gaps = 2/148 (1%)

Query: 32  EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASP 90
           E    GFL+T+V+ L  + R GSL  +TFGLACCA+EMM A   R+DL RFG    RASP
Sbjct: 4   EEAPSGFLLTTVEDLAGYFRKGSLWPVTFGLACCAIEMMAAGASRFDLSRFGMEVFRASP 63

Query: 91  RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150
           RQ+D+MIVAG ++ KMA  +R+VYDQMPEP++V+SMG CA+ GG ++ +Y++V+G D IV
Sbjct: 64  RQADLMIVAGRVSQKMAPVVRQVYDQMPEPKWVLSMGVCASSGGMFN-NYAIVQGVDHIV 122

Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIR 178
           PVDIY+PGCPP  E LI  IL L ++I+
Sbjct: 123 PVDIYLPGCPPRPEMLINSILALHQQIQ 150


>gi|320532540|ref|ZP_08033350.1| NADH dehydrogenase subunit B [Actinomyces sp. oral taxon 171 str.
           F0337]
 gi|320135245|gb|EFW27383.1| NADH dehydrogenase subunit B [Actinomyces sp. oral taxon 171 str.
           F0337]
          Length = 204

 Score =  173 bits (438), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 80/151 (52%), Positives = 115/151 (76%), Gaps = 2/151 (1%)

Query: 30  SSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RA 88
           ++E+   GFL+T+V++L   A+  S+  +T GLACCA+EMM A  PR+D+ RFG+   RA
Sbjct: 23  AAEVDSPGFLLTTVEKLAGLAQARSMWPVTMGLACCAIEMMAAGTPRFDMARFGWEVFRA 82

Query: 89  SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 148
           SPR +DVMIV+G +++KMA  +R VYD MPEP++VISMG+CA+ GG ++ +Y+VV+GCD 
Sbjct: 83  SPRHADVMIVSGRVSHKMAPIVRNVYDSMPEPKWVISMGACASSGGIFN-NYAVVQGCDH 141

Query: 149 IVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           IVPVDIY+PGCPP  E L+  +L L ++I +
Sbjct: 142 IVPVDIYLPGCPPRPEMLLNAMLELTRQIEK 172


>gi|300711699|ref|YP_003737513.1| NADH dehydrogenase-like complex subunit B [Halalkalicoccus jeotgali
           B3]
 gi|299125382|gb|ADJ15721.1| NADH dehydrogenase-like complex subunit B [Halalkalicoccus jeotgali
           B3]
          Length = 233

 Score =  173 bits (438), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 75/158 (47%), Positives = 112/158 (70%), Gaps = 2/158 (1%)

Query: 22  VDADF-SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLE 80
           VD  F SR+        F++T  D+ + WAR  S+  + FG+ACC++EMM     ++DL+
Sbjct: 27  VDNRFNSRLREAFGSSPFILTKFDKFLNWARGSSMFMLQFGIACCSLEMMHTYAVKHDLD 86

Query: 81  RFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS 139
           RFG   PRASPRQ+D +I+ GT+ +K A  ++RVYDQM EP++V++MGSCA  GG +   
Sbjct: 87  RFGSGVPRASPRQADTIIIPGTIVSKFAPRMKRVYDQMAEPKFVVNMGSCAISGGPFQEG 146

Query: 140 YSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
           Y+V++G + ++PVDI+VPGCPP  EAL+YG++ LQ++I
Sbjct: 147 YNVIKGAEEVIPVDIHVPGCPPRPEALVYGVVKLQERI 184


>gi|317503351|ref|ZP_07961398.1| NADH-quinone oxidoreductase subunit B [Prevotella salivae DSM
           15606]
 gi|315665530|gb|EFV05150.1| NADH-quinone oxidoreductase subunit B [Prevotella salivae DSM
           15606]
          Length = 240

 Score =  173 bits (438), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 75/161 (46%), Positives = 111/161 (68%), Gaps = 3/161 (1%)

Query: 21  KVDADFSRISSEITHKGF--LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78
           K +    +I+ E+   G   +V S+DQ + W R+ SL  +TFG +CC +E M     RYD
Sbjct: 17  KDNDTLEKITKELNEGGVNVIVGSLDQAINWGRSNSLWSLTFGTSCCGIEFMAVGCARYD 76

Query: 79  LERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137
             RFGF   R SPRQ+D+++ AGT+TNKMA   +R+YD++ EP+YV+++G C   GG + 
Sbjct: 77  FSRFGFEVTRNSPRQADLIMCAGTITNKMAPVFKRLYDEIAEPKYVVAVGGCTISGGPFK 136

Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
            SY+VVRG D +VPVD+Y+PGCPP  EA++YG++ LQ+K++
Sbjct: 137 KSYNVVRGIDELVPVDVYIPGCPPRPEAILYGMMQLQRKVK 177


>gi|29831381|ref|NP_826015.1| NADH dehydrogenase subunit B [Streptomyces avermitilis MA-4680]
 gi|81718124|sp|Q82DY0|NUOB1_STRAW RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName:
           Full=NADH dehydrogenase I subunit B 1; AltName:
           Full=NDH-1 subunit B 1
 gi|29608496|dbj|BAC72550.1| putative NADH dehydrogenase I chain B (complex I) [Streptomyces
           avermitilis MA-4680]
          Length = 184

 Score =  172 bits (437), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 84/149 (56%), Positives = 106/149 (71%), Gaps = 2/149 (1%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RAS 89
            E    GFL+T+V+Q   W R  S+   TFGLACCA+EMM     RYDL RFG    R S
Sbjct: 4   EEKLPSGFLLTTVEQAAGWVRKASVFPATFGLACCAIEMMTTGAGRYDLARFGMEVFRGS 63

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQ+D+MIVAG ++ KMA  LR+VYDQMP P++VISMG CA+ GG ++ +Y++V+G D I
Sbjct: 64  PRQADLMIVAGRVSQKMAPVLRQVYDQMPNPKWVISMGVCASSGGMFN-NYAIVQGVDHI 122

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           VPVDIY+PGCPP  E LI  IL L +KI+
Sbjct: 123 VPVDIYLPGCPPRPEMLIDAILKLHQKIQ 151


>gi|159899599|ref|YP_001545846.1| NADH dehydrogenase subunit B [Herpetosiphon aurantiacus ATCC 23779]
 gi|238065011|sp|A9B4Z5|NUOB1_HERA2 RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName:
           Full=NADH dehydrogenase I subunit B 1; AltName:
           Full=NDH-1 subunit B 1
 gi|159892638|gb|ABX05718.1| NADH-quinone oxidoreductase, B subunit [Herpetosiphon aurantiacus
           ATCC 23779]
          Length = 179

 Score =  172 bits (437), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 81/144 (56%), Positives = 108/144 (75%), Gaps = 2/144 (1%)

Query: 37  GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95
           G + T+++ +V W RT ++  M FGLACCA+EMM      YD+ RFG    RASPRQ+D+
Sbjct: 11  GIVTTTLEGVVNWGRTKAMWPMLFGLACCAIEMMAGQASNYDMSRFGLELMRASPRQADL 70

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
           MIVAG ++ KMA  LRR+YDQMPEP++V++MG CA+ GG Y+ +Y++V+G D IVPVD+Y
Sbjct: 71  MIVAGRVSRKMAPVLRRLYDQMPEPKWVVAMGDCASCGGVYN-NYAIVQGVDEIVPVDVY 129

Query: 156 VPGCPPTAEALIYGILLLQKKIRR 179
           V GCPP  EALI GIL L +KI+R
Sbjct: 130 VAGCPPRPEALIDGILQLHEKIKR 153


>gi|320095549|ref|ZP_08027213.1| NADH-quinone oxidoreductase subunit B [Actinomyces sp. oral taxon
           178 str. F0338]
 gi|319977527|gb|EFW09206.1| NADH-quinone oxidoreductase subunit B [Actinomyces sp. oral taxon
           178 str. F0338]
          Length = 184

 Score =  172 bits (437), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 80/142 (56%), Positives = 112/142 (78%), Gaps = 2/142 (1%)

Query: 37  GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95
           G  +TSV++++  AR  S   +T GLACCA+EMM A  PR+D+ RFG    RASPR SD+
Sbjct: 10  GIALTSVEKVLGLARKHSQWPVTMGLACCAIEMMAAGTPRFDMARFGLEVFRASPRHSDL 69

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
           MIV+G +++KMA  +RRVYD MPEP++VISMG+CA+ GG ++ +Y+VV+GCD IVPVD+Y
Sbjct: 70  MIVSGRVSHKMAPIIRRVYDSMPEPKWVISMGACASSGGVFN-NYAVVQGCDHIVPVDVY 128

Query: 156 VPGCPPTAEALIYGILLLQKKI 177
           +PGCPP  EALI+ +L+L+++I
Sbjct: 129 LPGCPPRPEALIHAVLVLREQI 150


>gi|55378230|ref|YP_136080.1| NADH dehydrogenase I B subunit [Haloarcula marismortui ATCC 43049]
 gi|55230955|gb|AAV46374.1| NADH dehydrogenase I B subunit [Haloarcula marismortui ATCC 43049]
          Length = 230

 Score =  172 bits (437), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 72/141 (51%), Positives = 105/141 (74%), Gaps = 1/141 (0%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQSDVM 96
           F++T  D+ + W R  S+  + FG+ACC++EM+     ++DL+RFG   PRASPRQ+DV+
Sbjct: 41  FILTKFDKFMNWVRGSSMFMLQFGIACCSIEMIHTYAIKHDLDRFGSGVPRASPRQADVI 100

Query: 97  IVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV 156
           IV GT+ +K A  ++RVYDQMPEP++V+SMGSC   GG +   Y+V++G + ++PVDI+V
Sbjct: 101 IVPGTIVSKFAPRMKRVYDQMPEPKFVVSMGSCTISGGPFQEGYNVIKGAEEVIPVDIHV 160

Query: 157 PGCPPTAEALIYGILLLQKKI 177
           PGCPP  EALIYG+  LQ++I
Sbjct: 161 PGCPPRPEALIYGVAKLQERI 181


>gi|270308195|ref|YP_003330253.1| NADH-quinone oxidoreductase, B subunit [Dehalococcoides sp. VS]
 gi|270154087|gb|ACZ61925.1| NADH-quinone oxidoreductase, B subunit [Dehalococcoides sp. VS]
          Length = 200

 Score =  172 bits (437), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 83/157 (52%), Positives = 114/157 (72%), Gaps = 1/157 (0%)

Query: 29  ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-R 87
           +S + +  G  +TSV++++ W+R  SL  + FGLACCA+EMM  +  R+DL RFG    R
Sbjct: 43  LSGDESPPGVFITSVEKVLNWSRHYSLWPVMFGLACCAIEMMCMAASRWDLARFGMDIFR 102

Query: 88  ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCD 147
           ASPRQ+D+MIVAGTLT KMA  LRR+YDQMPEP++V++MG+C   GG +  SYSVV G +
Sbjct: 103 ASPRQADLMIVAGTLTWKMAPWLRRIYDQMPEPKWVLAMGACGTSGGLFRDSYSVVPGFN 162

Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
            +VPVD+YVPGCPP  EAL+  I+ + +KI +   +K
Sbjct: 163 LVVPVDVYVPGCPPRPEALMRAIMDIHEKIDKTRIIK 199


>gi|332669450|ref|YP_004452458.1| NADH-quinone oxidoreductase subunit B [Cellulomonas fimi ATCC 484]
 gi|332338488|gb|AEE45071.1| NADH-quinone oxidoreductase, B subunit [Cellulomonas fimi ATCC 484]
          Length = 183

 Score =  172 bits (436), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 84/148 (56%), Positives = 110/148 (74%), Gaps = 2/148 (1%)

Query: 32  EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASP 90
           E    GFL+T+V+ LV + R GSL  +TFGLACCA+EMM A  PRYDL RFG    RASP
Sbjct: 4   EEAPSGFLLTTVEDLVGYFRKGSLWPVTFGLACCAIEMMAAGAPRYDLSRFGMEVFRASP 63

Query: 91  RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150
           RQ+D+MIVAG ++ KMA  +R+VYDQM  P++V+SMG CA+ GG ++ +Y++V+G D +V
Sbjct: 64  RQADLMIVAGRVSQKMAPVVRQVYDQMSAPKWVLSMGVCASSGGMFN-NYAIVQGVDHVV 122

Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIR 178
           PVDIY+PGCPP  E LI  IL L  +I+
Sbjct: 123 PVDIYLPGCPPRPEMLINAILTLHDQIQ 150


>gi|319950452|ref|ZP_08024366.1| NADH dehydrogenase subunit B [Dietzia cinnamea P4]
 gi|319435875|gb|EFV91081.1| NADH dehydrogenase subunit B [Dietzia cinnamea P4]
          Length = 184

 Score =  172 bits (436), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 85/151 (56%), Positives = 111/151 (73%), Gaps = 2/151 (1%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RAS 89
            E    GFL+T+V+QL  + R GSL   TFGLACCA+EMM  S  RYDL RFG    RAS
Sbjct: 4   EEKLPAGFLLTTVEQLAGYMRKGSLWPATFGLACCAIEMMATSGGRYDLARFGTEVFRAS 63

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQ+D+MIVAG ++ KMA  LR+VYDQM EP++V+SMG CA+ GG ++ +Y++V+G D I
Sbjct: 64  PRQADLMIVAGRVSQKMAPVLRQVYDQMAEPKWVLSMGVCASSGGMFN-NYAIVQGVDHI 122

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           VPVDIY+PGCPP  E L++ I+ L  KI+ +
Sbjct: 123 VPVDIYLPGCPPRPEMLMHAIITLHDKIQNM 153


>gi|227497895|ref|ZP_03928075.1| NADH dehydrogenase (quinone) [Actinomyces urogenitalis DSM 15434]
 gi|226832687|gb|EEH65070.1| NADH dehydrogenase (quinone) [Actinomyces urogenitalis DSM 15434]
          Length = 209

 Score =  172 bits (436), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 81/144 (56%), Positives = 111/144 (77%), Gaps = 2/144 (1%)

Query: 37  GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95
           GFL+TSV++L   A+  SL  +T GLACCA+EMM  + PR+DL RFG+   RASPR +DV
Sbjct: 35  GFLLTSVEKLSALAQARSLWPVTMGLACCAIEMMATAAPRFDLSRFGWEVFRASPRHADV 94

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
           M+V+G +++KMA  +R VYD MPEP++VISMG+CA+ GG ++ +Y++V+GCD IVPVDIY
Sbjct: 95  MLVSGRVSHKMAPIVRNVYDAMPEPKWVISMGACASSGGIFN-NYAIVQGCDHIVPVDIY 153

Query: 156 VPGCPPTAEALIYGILLLQKKIRR 179
           +PGCPP  E LI  +L L ++I R
Sbjct: 154 LPGCPPRPEMLINAMLELTRQIER 177


>gi|256371181|ref|YP_003109005.1| NADH-quinone oxidoreductase, B subunit [Acidimicrobium ferrooxidans
           DSM 10331]
 gi|256007765|gb|ACU53332.1| NADH-quinone oxidoreductase, B subunit [Acidimicrobium ferrooxidans
           DSM 10331]
          Length = 180

 Score =  172 bits (436), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 83/143 (58%), Positives = 104/143 (72%), Gaps = 2/143 (1%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVM 96
           FL   ++ LV WAR  S+   TFGLACCA+EMM A    +DL RFG    RASPRQ+D+M
Sbjct: 10  FLTARLEDLVNWARKSSVWPATFGLACCAIEMMAAGAADFDLARFGMEVFRASPRQADLM 69

Query: 97  IVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV 156
           IVAG ++ KMA  LR+VYDQMPEP++VISMG CA+ GG ++ +Y++V+G D IVPVD+Y 
Sbjct: 70  IVAGRVSQKMAPVLRQVYDQMPEPKWVISMGVCASSGGMFN-NYAIVQGVDEIVPVDVYA 128

Query: 157 PGCPPTAEALIYGILLLQKKIRR 179
           PGCPP  E LI  IL L +KIR 
Sbjct: 129 PGCPPGPETLIRAILTLHEKIRH 151


>gi|313156901|gb|EFR56339.1| NADH-quinone oxidoreductase, B subunit [Alistipes sp. HGB5]
          Length = 218

 Score =  172 bits (435), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 78/161 (48%), Positives = 113/161 (70%), Gaps = 6/161 (3%)

Query: 19  LEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78
           LEK+ A+    ++ +     +V  +D+L+ W R+ SL  +TF  +CC +E M     RYD
Sbjct: 23  LEKMVAELRDNNTNV-----IVGCLDELIEWGRSNSLWPLTFATSCCGIEFMAVGAARYD 77

Query: 79  LERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137
             RFGF   RASPRQ+D ++VAGT+T+KMA  LRR+YDQM +P+YVI++G CA  GG + 
Sbjct: 78  FARFGFEVARASPRQADFIMVAGTITHKMAPVLRRLYDQMADPKYVIAVGGCAISGGPFK 137

Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
            SY V+ G DRI+PVD+Y+PGCPP  EA++YG++ LQ+K++
Sbjct: 138 KSYHVLNGVDRILPVDVYIPGCPPRPEAMLYGLMQLQRKVK 178


>gi|188996814|ref|YP_001931065.1| NADH-quinone oxidoreductase, B subunit [Sulfurihydrogenibium sp.
           YO3AOP1]
 gi|238065219|sp|B2V988|NUOB_SULSY RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|188931881|gb|ACD66511.1| NADH-quinone oxidoreductase, B subunit [Sulfurihydrogenibium sp.
           YO3AOP1]
          Length = 171

 Score =  172 bits (435), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 75/142 (52%), Positives = 109/142 (76%), Gaps = 1/142 (0%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           +T  G ++T+V+++++W R  SL  ++ GLACCA+EMM  +  R+D +R G   R SPRQ
Sbjct: 3   MTSSGIILTTVEEVLSWGRRNSLWPVSVGLACCAIEMMHTAASRFDTDRLGIIFRGSPRQ 62

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           SDV+IVAGT+ NK+A  LR +Y+QMP+P++VISMG CA+ GG +  +Y  ++G DRI+PV
Sbjct: 63  SDVLIVAGTVVNKVAPMLRLIYEQMPDPKWVISMGGCASAGGPFP-TYPTLQGVDRIIPV 121

Query: 153 DIYVPGCPPTAEALIYGILLLQ 174
           D+Y+PGCPPT +AL++GIL LQ
Sbjct: 122 DVYIPGCPPTPQALLWGILELQ 143


>gi|291285958|ref|YP_003502774.1| NADH-quinone oxidoreductase, B subunit [Denitrovibrio acetiphilus
           DSM 12809]
 gi|290883118|gb|ADD66818.1| NADH-quinone oxidoreductase, B subunit [Denitrovibrio acetiphilus
           DSM 12809]
          Length = 158

 Score =  172 bits (435), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 79/142 (55%), Positives = 105/142 (73%), Gaps = 1/142 (0%)

Query: 36  KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDV 95
           +  L TS+D ++ + R GS+  +TFGLACCA+EMM     ++DL+R G   RA+PRQ+D+
Sbjct: 10  ENVLTTSIDNVINYCRKGSIWPVTFGLACCAIEMMATGAAKFDLDRMGIIFRATPRQADL 69

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
           MIVAGT+T KMA  +R+VY QMPEP++VI+MGSCA  GG Y  +YS V+G D ++PVD Y
Sbjct: 70  MIVAGTVTRKMAPVVRKVYVQMPEPKWVIAMGSCATSGGIYD-TYSTVQGVDEVIPVDFY 128

Query: 156 VPGCPPTAEALIYGILLLQKKI 177
           VPGCPP  EAL+  I+ LQ KI
Sbjct: 129 VPGCPPRPEALLDAIVALQSKI 150


>gi|328884313|emb|CCA57552.1| NADH-ubiquinone oxidoreductase chain B [Streptomyces venezuelae
           ATCC 10712]
          Length = 184

 Score =  172 bits (435), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 83/149 (55%), Positives = 106/149 (71%), Gaps = 2/149 (1%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RAS 89
            E    GFL+T+V+Q   W R  S+   TFGLACCA+EMM     RYDL RFG    R S
Sbjct: 4   EEKLPSGFLLTTVEQAAGWVRKASVFPATFGLACCAIEMMTTGAGRYDLARFGMEVFRGS 63

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQ+D+MIVAG ++ KMA  LR+VYDQMP P++VISMG CA+ GG ++ +Y++V+G D I
Sbjct: 64  PRQADLMIVAGRVSQKMAPVLRQVYDQMPNPKWVISMGVCASSGGMFN-NYAIVQGVDHI 122

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           VPVDIY+PGCPP  E L+  IL L +KI+
Sbjct: 123 VPVDIYLPGCPPRPEMLLDAILKLHQKIQ 151


>gi|198276152|ref|ZP_03208683.1| hypothetical protein BACPLE_02341 [Bacteroides plebeius DSM 17135]
 gi|198270964|gb|EDY95234.1| hypothetical protein BACPLE_02341 [Bacteroides plebeius DSM 17135]
          Length = 193

 Score =  172 bits (435), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 74/143 (51%), Positives = 105/143 (73%), Gaps = 1/143 (0%)

Query: 37  GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APRASPRQSDV 95
           G ++ +VD+L+ W R+ SL  +TFG +CCA+E M     RYD+ RFGF   R SPRQ+D+
Sbjct: 36  GIVLGTVDELINWGRSNSLWSLTFGTSCCAIEFMALGAARYDMARFGFEVTRNSPRQADM 95

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
           ++V GT+T+KMA  L+R+YDQM EP+YV+++G C   GG +  SY VV G D+I+PVD+Y
Sbjct: 96  IMVLGTITHKMAPVLKRLYDQMAEPKYVVAVGGCTISGGPFIKSYHVVNGIDKIIPVDVY 155

Query: 156 VPGCPPTAEALIYGILLLQKKIR 178
           +PGCPP  EA  YG++ LQ+KI+
Sbjct: 156 IPGCPPRPEAFFYGMMQLQRKIK 178


>gi|298246351|ref|ZP_06970157.1| NADH-quinone oxidoreductase, B subunit [Ktedonobacter racemifer DSM
           44963]
 gi|297553832|gb|EFH87697.1| NADH-quinone oxidoreductase, B subunit [Ktedonobacter racemifer DSM
           44963]
          Length = 200

 Score =  171 bits (434), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 80/144 (55%), Positives = 110/144 (76%), Gaps = 2/144 (1%)

Query: 37  GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95
           G L T V +++ W+R+ SL    FGLACCA+EMM  S  R+DL RFG    RASPRQ+D+
Sbjct: 32  GVLTTQVSKILDWSRSSSLWPALFGLACCAIEMMSTSASRFDLARFGAEVYRASPRQADL 91

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
           MIVAG  + KMA  LR++YDQMPEP++VISMG+CA+ GG ++ +Y++V+G D+IVPVD++
Sbjct: 92  MIVAGRCSVKMAPVLRQIYDQMPEPKWVISMGACASCGGVFN-NYAIVQGVDKIVPVDVF 150

Query: 156 VPGCPPTAEALIYGILLLQKKIRR 179
           +PGCPPT + L++G   LQ+KIR 
Sbjct: 151 IPGCPPTPDMLLFGFNELQRKIRE 174


>gi|315605129|ref|ZP_07880180.1| NADH-quinone oxidoreductase subunit B [Actinomyces sp. oral taxon
           180 str. F0310]
 gi|315313165|gb|EFU61231.1| NADH-quinone oxidoreductase subunit B [Actinomyces sp. oral taxon
           180 str. F0310]
          Length = 184

 Score =  171 bits (434), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 80/142 (56%), Positives = 112/142 (78%), Gaps = 2/142 (1%)

Query: 37  GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95
           G  +TSV++++  AR  S   +T GLACCA+EMM A  PR+D+ RFG    RASPR SD+
Sbjct: 10  GIALTSVEKVLGLARKYSQWPVTMGLACCAIEMMAAGTPRFDMARFGLEVFRASPRHSDM 69

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
           MIV+G +++KMA  +RRVYD MPEP++VISMG+CA+ GG ++ +Y+VV+GCD IVPVD+Y
Sbjct: 70  MIVSGRVSHKMAPIIRRVYDSMPEPKWVISMGACASSGGVFN-NYAVVQGCDHIVPVDVY 128

Query: 156 VPGCPPTAEALIYGILLLQKKI 177
           +PGCPP  EALI+ +L+L+++I
Sbjct: 129 LPGCPPRPEALIHAVLVLREQI 150


>gi|297201624|ref|ZP_06919021.1| NADH dehydrogenase subunit B [Streptomyces sviceus ATCC 29083]
 gi|197711005|gb|EDY55039.1| NADH dehydrogenase subunit B [Streptomyces sviceus ATCC 29083]
          Length = 184

 Score =  171 bits (434), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 83/149 (55%), Positives = 106/149 (71%), Gaps = 2/149 (1%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RAS 89
            E    GFL+T+V+Q   W R  S+   TFGLACCA+EMM     RYDL RFG    R S
Sbjct: 4   EEKLPSGFLLTTVEQAAGWVRKASVFPATFGLACCAIEMMTTGAGRYDLARFGMEVFRGS 63

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQ+D+MIVAG ++ KMA  LR+VYDQMP P++VISMG CA+ GG ++ +Y++V+G D I
Sbjct: 64  PRQADLMIVAGRVSQKMAPVLRQVYDQMPNPKWVISMGVCASSGGMFN-NYAIVQGVDHI 122

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           VPVDIY+PGCPP  E L+  IL L +KI+
Sbjct: 123 VPVDIYLPGCPPRPEMLMDAILKLHQKIQ 151


>gi|295837124|ref|ZP_06824057.1| NADH-quinone oxidoreductase, B subunit [Streptomyces sp. SPB74]
 gi|318057842|ref|ZP_07976565.1| NADH dehydrogenase subunit B [Streptomyces sp. SA3_actG]
 gi|318078940|ref|ZP_07986272.1| NADH dehydrogenase subunit B [Streptomyces sp. SA3_actF]
 gi|333025118|ref|ZP_08453182.1| putative NADH dehydrogenase subunit B [Streptomyces sp. Tu6071]
 gi|197697234|gb|EDY44167.1| NADH-quinone oxidoreductase, B subunit [Streptomyces sp. SPB74]
 gi|332744970|gb|EGJ75411.1| putative NADH dehydrogenase subunit B [Streptomyces sp. Tu6071]
          Length = 184

 Score =  171 bits (434), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 82/149 (55%), Positives = 106/149 (71%), Gaps = 2/149 (1%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RAS 89
            E    GFL+T+V+Q   W R  S+   TFGLACCA+EMM     RYDL RFG    R S
Sbjct: 4   EEKLPSGFLLTTVEQAAGWVRKSSMFPATFGLACCAIEMMTTGAGRYDLARFGMEVFRGS 63

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQ+D+MIVAG ++ KMA  LR+VYDQMP P++VISMG CA+ GG ++ +Y++V+G D +
Sbjct: 64  PRQADLMIVAGRVSQKMAPVLRQVYDQMPNPKWVISMGVCASSGGMFN-NYAIVQGVDHV 122

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           VPVDIY+PGCPP  E LI  IL L +K++
Sbjct: 123 VPVDIYLPGCPPRPEMLIDAILKLHQKVQ 151


>gi|313126885|ref|YP_004037155.1| NADH dehydrogenase subunit b [Halogeometricum borinquense DSM
           11551]
 gi|312293250|gb|ADQ67710.1| NADH dehydrogenase subunit B [Halogeometricum borinquense DSM
           11551]
          Length = 236

 Score =  171 bits (434), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 77/182 (42%), Positives = 113/182 (62%), Gaps = 11/182 (6%)

Query: 7   NQKIISGQSSCSLEKVDADF----------SRISSEITHKGFLVTSVDQLVTWARTGSLM 56
           NQ  ++  +    E  DA            S++        F++T  D  + W R  S+ 
Sbjct: 6   NQPFVTDDTQVQTETRDARMTGSGADNRFNSKLREAFGSSPFILTKFDNFMNWVRGSSMF 65

Query: 57  WMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYD 115
            + FG+ACC++EMM     ++DL+RF    PRASPRQ+DV+IV GT+ +K A  ++RVYD
Sbjct: 66  MLQFGIACCSIEMMHTYSVKHDLDRFAAGVPRASPRQADVIIVPGTIVSKFAPRMKRVYD 125

Query: 116 QMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175
           QMPEP++V+ MGSC   GG +   Y+V++G + ++PVDI+VPGCPP  EALIYG+  LQ+
Sbjct: 126 QMPEPKFVVGMGSCTVSGGPFQEGYNVIKGAEEVIPVDIHVPGCPPRPEALIYGVAKLQQ 185

Query: 176 KI 177
           +I
Sbjct: 186 RI 187


>gi|322435876|ref|YP_004218088.1| NADH-quinone oxidoreductase, B subunit [Acidobacterium sp.
           MP5ACTX9]
 gi|321163603|gb|ADW69308.1| NADH-quinone oxidoreductase, B subunit [Acidobacterium sp.
           MP5ACTX9]
          Length = 205

 Score =  171 bits (434), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 78/144 (54%), Positives = 109/144 (75%), Gaps = 2/144 (1%)

Query: 36  KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSD 94
           +G ++ S+D  + W R  S+  MTFGLACCA+EMM     RYD+ RFG    R SPRQSD
Sbjct: 50  EGIVLASLDAAINWVRKNSVWPMTFGLACCAIEMMSMGGSRYDIARFGAEVFRPSPRQSD 109

Query: 95  VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154
           +MI+AG ++ KMA  +RR+Y+QMPEP++VISMG+CA  GG ++ +Y++++G ++I+PVDI
Sbjct: 110 LMIIAGRVSQKMAPVIRRLYEQMPEPKWVISMGACATSGGVFN-NYALLQGVNQIIPVDI 168

Query: 155 YVPGCPPTAEALIYGILLLQKKIR 178
           YVPGCPP  E L+Y I LLQ+KI+
Sbjct: 169 YVPGCPPRPEQLLYAITLLQEKIQ 192


>gi|294630797|ref|ZP_06709357.1| NADH-quinone oxidoreductase, B subunit [Streptomyces sp. e14]
 gi|292834130|gb|EFF92479.1| NADH-quinone oxidoreductase, B subunit [Streptomyces sp. e14]
          Length = 184

 Score =  171 bits (434), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 83/149 (55%), Positives = 106/149 (71%), Gaps = 2/149 (1%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RAS 89
            E    GFL+T+V+Q   W R  S+   TFGLACCA+EMM     RYDL RFG    R S
Sbjct: 4   EEKLPSGFLLTTVEQAAGWVRKASVFPATFGLACCAIEMMTTGAGRYDLARFGMEVFRGS 63

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQ+D+MIVAG ++ KMA  LR+VYDQMP P++VISMG CA+ GG ++ +Y++V+G D I
Sbjct: 64  PRQADLMIVAGRVSQKMAPVLRQVYDQMPNPKWVISMGVCASSGGMFN-NYAIVQGVDHI 122

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           VPVDIY+PGCPP  E L+  IL L +KI+
Sbjct: 123 VPVDIYLPGCPPRPEMLMDAILKLHQKIQ 151


>gi|290958259|ref|YP_003489441.1| NADH dehydrogenase subunit NuoB [Streptomyces scabiei 87.22]
 gi|260647785|emb|CBG70890.1| NuoB, NADH dehydrogenase subunit [Streptomyces scabiei 87.22]
          Length = 184

 Score =  171 bits (434), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 83/149 (55%), Positives = 106/149 (71%), Gaps = 2/149 (1%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RAS 89
            E    GFL+T+V+Q   W R  S+   TFGLACCA+EMM     RYDL RFG    R S
Sbjct: 4   EEKLPSGFLLTTVEQAAGWVRKASVFPATFGLACCAIEMMTTGAGRYDLARFGMEVFRGS 63

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQ+D+MIVAG ++ KMA  LR+VYDQMP P++VISMG CA+ GG ++ +Y++V+G D I
Sbjct: 64  PRQADLMIVAGRVSQKMAPVLRQVYDQMPNPKWVISMGVCASSGGMFN-NYAIVQGVDHI 122

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           VPVDIY+PGCPP  E L+  IL L +KI+
Sbjct: 123 VPVDIYLPGCPPRPEMLMDAILKLHQKIQ 151


>gi|284992924|ref|YP_003411478.1| NADH-quinone oxidoreductase subunit B [Geodermatophilus obscurus
           DSM 43160]
 gi|284066169|gb|ADB77107.1| NADH-quinone oxidoreductase, B subunit [Geodermatophilus obscurus
           DSM 43160]
          Length = 226

 Score =  171 bits (434), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 83/148 (56%), Positives = 106/148 (71%), Gaps = 2/148 (1%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RAS 89
            E    G L+TSV++LV W R  SL   TFGLACCA+EMM     RYDL RFG    RAS
Sbjct: 4   EEKLPSGVLLTSVEKLVNWTRKSSLWPATFGLACCAIEMMATGAGRYDLARFGMEVFRAS 63

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQ+D+MIVAG ++ KMA  LR++YDQMPEPR+V++MG CA+ GG ++ +Y++V+G D +
Sbjct: 64  PRQADLMIVAGRVSQKMAPVLRQIYDQMPEPRWVLAMGVCASSGGMFN-NYAIVQGVDHV 122

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKI 177
           VPVD+Y+PGCPP  E L   IL L  KI
Sbjct: 123 VPVDMYLPGCPPRPEMLTDAILKLHHKI 150


>gi|317123870|ref|YP_004097982.1| NADH dehydrogenase subunit B [Intrasporangium calvum DSM 43043]
 gi|315587958|gb|ADU47255.1| NADH dehydrogenase subunit B [Intrasporangium calvum DSM 43043]
          Length = 221

 Score =  171 bits (434), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 79/136 (58%), Positives = 102/136 (75%), Gaps = 1/136 (0%)

Query: 43  VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA-SPRQSDVMIVAGT 101
           +  L+ W R  SL    FGLACCA+E +  SM R+D  R G  P A  PRQ+D+MIV+GT
Sbjct: 30  IKVLLNWGRRYSLWVFNFGLACCAIEFIATSMARHDFMRLGVIPFAPGPRQADLMIVSGT 89

Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP 161
           +T+KMA A+RR+YDQMPEP+YVIS G+CAN GG Y  SYSV +G D ++PVD+YVPGCPP
Sbjct: 90  VTDKMAPAIRRLYDQMPEPKYVISFGACANSGGPYWDSYSVTKGVDTVIPVDVYVPGCPP 149

Query: 162 TAEALIYGILLLQKKI 177
             EAL++GI+ LQ++I
Sbjct: 150 RPEALLHGIIRLQEQI 165


>gi|219847965|ref|YP_002462398.1| NADH dehydrogenase subunit B [Chloroflexus aggregans DSM 9485]
 gi|238065007|sp|B8G705|NUOB1_CHLAD RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName:
           Full=NADH dehydrogenase I subunit B 1; AltName:
           Full=NDH-1 subunit B 1
 gi|219542224|gb|ACL23962.1| NADH-quinone oxidoreductase, B subunit [Chloroflexus aggregans DSM
           9485]
          Length = 174

 Score =  171 bits (434), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 79/152 (51%), Positives = 111/152 (73%), Gaps = 2/152 (1%)

Query: 29  ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PR 87
           I  +  + G + T+++ +V W RT ++  + FGLACCA+EMM A    YDL RFG    R
Sbjct: 3   IEEKAGNLGIVTTTLETVVNWGRTNAMWPLLFGLACCAIEMMGAQASNYDLSRFGMELNR 62

Query: 88  ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCD 147
           ASPRQ+D+MIVAG ++ KMA  +RR+YDQMPEP++VI+MG CA  GG ++ +Y++V+G D
Sbjct: 63  ASPRQADLMIVAGRVSRKMAPVVRRLYDQMPEPKWVIAMGDCAACGGIFN-NYAIVQGVD 121

Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
            +VPVD+YV GCPP  EALI GI++L +K+ R
Sbjct: 122 EVVPVDVYVAGCPPRPEALIDGIMMLHQKVMR 153


>gi|163848441|ref|YP_001636485.1| NADH dehydrogenase subunit B [Chloroflexus aurantiacus J-10-fl]
 gi|222526369|ref|YP_002570840.1| NADH dehydrogenase subunit B [Chloroflexus sp. Y-400-fl]
 gi|238065028|sp|A9WFB2|NUOB2_CHLAA RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName:
           Full=NADH dehydrogenase I subunit B 2; AltName:
           Full=NDH-1 subunit B 2
 gi|238065030|sp|B9LAU1|NUOB2_CHLSY RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName:
           Full=NADH dehydrogenase I subunit B 2; AltName:
           Full=NDH-1 subunit B 2
 gi|163669730|gb|ABY36096.1| NADH-quinone oxidoreductase, B subunit [Chloroflexus aurantiacus
           J-10-fl]
 gi|222450248|gb|ACM54514.1| NADH-quinone oxidoreductase, B subunit [Chloroflexus sp. Y-400-fl]
          Length = 174

 Score =  171 bits (433), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 79/152 (51%), Positives = 111/152 (73%), Gaps = 2/152 (1%)

Query: 29  ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PR 87
           I  +  + G + T+++ +V W RT ++  + FGLACCA+EMM A    YDL RFG    R
Sbjct: 3   IEEKAGNLGIVTTTLETVVNWGRTNAMWPLLFGLACCAIEMMGAQASNYDLSRFGMELNR 62

Query: 88  ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCD 147
           ASPRQ+D+MIVAG ++ KMA  +RR+YDQMPEP++VI+MG CA  GG ++ +Y++V+G D
Sbjct: 63  ASPRQADLMIVAGRVSRKMAPVVRRLYDQMPEPKWVIAMGDCAACGGIFN-NYAIVQGVD 121

Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
            +VPVD+YV GCPP  EALI GI++L +K+ R
Sbjct: 122 EVVPVDVYVAGCPPRPEALIDGIMMLHQKVMR 153


>gi|328953790|ref|YP_004371124.1| NAD(P)H-quinone oxidoreductase subunit K [Desulfobacca acetoxidans
           DSM 11109]
 gi|328454114|gb|AEB09943.1| NAD(P)H-quinone oxidoreductase subunit K [Desulfobacca acetoxidans
           DSM 11109]
          Length = 174

 Score =  171 bits (433), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 82/145 (56%), Positives = 109/145 (75%), Gaps = 2/145 (1%)

Query: 36  KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APRASPRQSD 94
              L TS++++V WAR  SL   TFGLACCA+EM+  +  RYD+ RFG  A RASPRQ+D
Sbjct: 9   NNILTTSLEKMVDWARKNSLWPATFGLACCAIEMIVTAANRYDIARFGMEAFRASPRQAD 68

Query: 95  VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154
           +MIVAGT+T KM  A+ R+Y+QM EP++VI+MG+CA+ GG +  SY+VV+G D+ +PVD+
Sbjct: 69  LMIVAGTVTKKMVPAVVRIYEQMTEPKWVIAMGACASSGGIFR-SYAVVQGIDQYLPVDV 127

Query: 155 YVPGCPPTAEALIYGILLLQKKIRR 179
           YVPGCPP  E L+YGIL L  KI +
Sbjct: 128 YVPGCPPRPEGLLYGILKLHDKILK 152


>gi|297192787|ref|ZP_06910185.1| NADH dehydrogenase subunit B (NuoB) [Streptomyces pristinaespiralis
           ATCC 25486]
 gi|197721026|gb|EDY64934.1| NADH dehydrogenase subunit B (NuoB) [Streptomyces pristinaespiralis
           ATCC 25486]
          Length = 184

 Score =  171 bits (433), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 83/149 (55%), Positives = 106/149 (71%), Gaps = 2/149 (1%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RAS 89
            E    GFL+T+V+Q   W R  S+   TFGLACCA+EMM     RYDL RFG    R S
Sbjct: 4   EEKLPSGFLLTTVEQAAGWVRKSSVFPATFGLACCAIEMMTTGAGRYDLARFGMEVFRGS 63

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQ+D+MIVAG ++ KMA  LR+VYDQMP P++VISMG CA+ GG ++ +Y++V+G D I
Sbjct: 64  PRQADLMIVAGRVSQKMAPVLRQVYDQMPNPKWVISMGVCASSGGMFN-NYAIVQGVDHI 122

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           VPVDIY+PGCPP  E L+  IL L +KI+
Sbjct: 123 VPVDIYLPGCPPRPEMLMDAILKLHQKIQ 151


>gi|254391138|ref|ZP_05006345.1| NADH dehydrogenase beta subunit [Streptomyces clavuligerus ATCC
           27064]
 gi|294814395|ref|ZP_06773038.1| NADH-quinone oxidoreductase subunit B [Streptomyces clavuligerus
           ATCC 27064]
 gi|326442785|ref|ZP_08217519.1| NADH dehydrogenase subunit B [Streptomyces clavuligerus ATCC 27064]
 gi|197704832|gb|EDY50644.1| NADH dehydrogenase beta subunit [Streptomyces clavuligerus ATCC
           27064]
 gi|294326994|gb|EFG08637.1| NADH-quinone oxidoreductase subunit B [Streptomyces clavuligerus
           ATCC 27064]
          Length = 184

 Score =  171 bits (433), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 83/149 (55%), Positives = 106/149 (71%), Gaps = 2/149 (1%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RAS 89
            E    GFL+T+V+Q   W R  S+   TFGLACCA+EMM     RYDL RFG    R S
Sbjct: 4   EEKLPSGFLLTTVEQAAGWVRKASVFPATFGLACCAIEMMTTGAGRYDLARFGMEVFRGS 63

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQ+D+MIVAG ++ KMA  LR+VYDQMP P++VISMG CA+ GG ++ +Y++V+G D I
Sbjct: 64  PRQADLMIVAGRVSQKMAPVLRQVYDQMPNPKWVISMGVCASSGGMFN-NYAIVQGVDHI 122

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           VPVDIY+PGCPP  E L+  IL L +KI+
Sbjct: 123 VPVDIYLPGCPPRPEMLMDAILKLHQKIQ 151


>gi|304382881|ref|ZP_07365364.1| NADH-quinone oxidoreductase subunit B [Prevotella marshii DSM
           16973]
 gi|304336066|gb|EFM02313.1| NADH-quinone oxidoreductase subunit B [Prevotella marshii DSM
           16973]
          Length = 207

 Score =  171 bits (433), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 81/181 (44%), Positives = 117/181 (64%), Gaps = 7/181 (3%)

Query: 1   MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWM 58
           MG+   N K I  +      K +    +I+ E+   G   ++ ++D L+ W R+ SL  +
Sbjct: 1   MGMKKPNIKSIPYKEF----KDNESLEKIAQELHEGGTNVVLGTLDDLINWGRSNSLWSL 56

Query: 59  TFGLACCAVEMMQASMPRYDLERFGF-APRASPRQSDVMIVAGTLTNKMASALRRVYDQM 117
           TF  +CC +E M     RYD  RFGF   R SPRQ+D+++ AGT+TNKMA   +R+YD+M
Sbjct: 57  TFATSCCGIEFMSVGCARYDFARFGFEVTRNSPRQADLIMCAGTITNKMAPVFKRLYDEM 116

Query: 118 PEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
            EP+YVI++G CA  GG +  SY VVRG + IVPVD+Y+PGCPP  EA++YG++ LQ+KI
Sbjct: 117 AEPKYVIAVGGCAISGGPFKSSYHVVRGINEIVPVDVYIPGCPPRPEAILYGMMQLQRKI 176

Query: 178 R 178
           +
Sbjct: 177 K 177


>gi|239929613|ref|ZP_04686566.1| NADH dehydrogenase subunit B [Streptomyces ghanaensis ATCC 14672]
 gi|291437937|ref|ZP_06577327.1| NuoB [Streptomyces ghanaensis ATCC 14672]
 gi|291340832|gb|EFE67788.1| NuoB [Streptomyces ghanaensis ATCC 14672]
          Length = 184

 Score =  171 bits (433), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 82/149 (55%), Positives = 106/149 (71%), Gaps = 2/149 (1%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RAS 89
            E    GFL+T+V+Q   W R  S+   TFGLACCA+EMM     RYDL RFG    R S
Sbjct: 4   EEKLPSGFLLTTVEQAAGWVRKSSVFPATFGLACCAIEMMTTGAGRYDLARFGMEVFRGS 63

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQ+D+MIVAG ++ KMA  LR+VYDQMP P++VISMG CA+ GG ++ +Y++V+G D +
Sbjct: 64  PRQADLMIVAGRVSQKMAPVLRQVYDQMPNPKWVISMGVCASSGGMFN-NYAIVQGVDHV 122

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           VPVDIY+PGCPP  E L+  IL L +KI+
Sbjct: 123 VPVDIYLPGCPPRPEMLLDAILKLHQKIQ 151


>gi|302559106|ref|ZP_07311448.1| NADH-quinone oxidoreductase, B subunit [Streptomyces griseoflavus
           Tu4000]
 gi|302476724|gb|EFL39817.1| NADH-quinone oxidoreductase, B subunit [Streptomyces griseoflavus
           Tu4000]
          Length = 184

 Score =  171 bits (433), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 82/149 (55%), Positives = 106/149 (71%), Gaps = 2/149 (1%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RAS 89
            E    GFL+T+V+Q   W R  S+   TFGLACCA+EMM     RYDL RFG    R S
Sbjct: 4   EEKLPSGFLLTTVEQAAGWVRKSSMFPATFGLACCAIEMMTTGAGRYDLARFGMEVFRGS 63

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQ+D+MIVAG ++ KMA  LR+VYDQMP P++VISMG CA+ GG ++ +Y++V+G D +
Sbjct: 64  PRQADLMIVAGRVSQKMAPVLRQVYDQMPNPKWVISMGVCASSGGMFN-NYAIVQGVDHV 122

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           VPVDIY+PGCPP  E L+  IL L +KI+
Sbjct: 123 VPVDIYLPGCPPRPEMLMDAILKLHQKIQ 151


>gi|73748692|ref|YP_307931.1| proton-translocating NADH-quinone oxidoreductase, B subunit
           [Dehalococcoides sp. CBDB1]
 gi|289432718|ref|YP_003462591.1| NADH-quinone oxidoreductase subunit beta [Dehalococcoides sp. GT]
 gi|123619736|sp|Q3ZXS0|NUOB_DEHSC RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|73660408|emb|CAI83015.1| proton-translocating NADH-quinone oxidoreductase, B subunit
           [Dehalococcoides sp. CBDB1]
 gi|288946438|gb|ADC74135.1| NADH-quinone oxidoreductase, B subunit [Dehalococcoides sp. GT]
          Length = 200

 Score =  171 bits (433), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 87/180 (48%), Positives = 121/180 (67%), Gaps = 5/180 (2%)

Query: 6   VNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACC 65
           V Q   +G +S   +  D     ++ E    G  +TSV++++ W+R  SL  + FGLACC
Sbjct: 24  VIQSFRTGHTSPYPDPADW----LNGEEPPPGVFITSVEKVLNWSRHYSLWPVMFGLACC 79

Query: 66  AVEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           A+EMM  +  R+DL RFG    RASPRQ+D+MIVAGTLT KMA  L+R+YDQMPEP++V+
Sbjct: 80  AIEMMCMAASRWDLARFGMDIFRASPRQADLMIVAGTLTWKMAPWLKRIYDQMPEPKWVL 139

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           +MG+C   GG +  SYSVV G + +VPVD+YVPGCPP  EAL+  I+ + +KI +   +K
Sbjct: 140 AMGACGTSGGLFRDSYSVVPGFNLVVPVDVYVPGCPPRPEALMRAIMDIHEKIDKTRILK 199


>gi|292655139|ref|YP_003535036.1| NADH dehydrogenase-like complex subunit B [Haloferax volcanii DS2]
 gi|291372435|gb|ADE04662.1| NADH dehydrogenase-like complex subunit B [Haloferax volcanii DS2]
          Length = 233

 Score =  171 bits (433), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 72/152 (47%), Positives = 106/152 (69%), Gaps = 1/152 (0%)

Query: 27  SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA- 85
           S++        F++T  D+ + W R  S+  + FG+ACC++EMM     ++DL+RF    
Sbjct: 33  SKLREAFGSSPFILTKFDKFMNWVRGSSMFMLQFGIACCSIEMMHTYSVKHDLDRFAAGV 92

Query: 86  PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRG 145
           PRASPRQ+DV+IV GT+ +K A  ++RVYDQMPEP++V+ MGSC   GG +   Y+V++G
Sbjct: 93  PRASPRQADVIIVPGTIVSKFAPRMKRVYDQMPEPKFVVGMGSCTISGGPFQEGYNVIKG 152

Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
            + ++PVDI++PGCPP  EALIYGI  LQ++I
Sbjct: 153 AEEVIPVDIHIPGCPPRPEALIYGIAKLQERI 184


>gi|189459784|ref|ZP_03008569.1| hypothetical protein BACCOP_00413 [Bacteroides coprocola DSM 17136]
 gi|189433513|gb|EDV02498.1| hypothetical protein BACCOP_00413 [Bacteroides coprocola DSM 17136]
          Length = 200

 Score =  171 bits (432), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 77/156 (49%), Positives = 108/156 (69%), Gaps = 3/156 (1%)

Query: 26  FSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFG 83
             R+  E+   G   ++ +VDQL+ W R+ SL  +TFG +CCA+E M     RYD+ RFG
Sbjct: 22  LQRMVDELNRDGAGVVIGTVDQLIEWGRSNSLWSLTFGTSCCAIEFMALGAARYDMARFG 81

Query: 84  F-APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142
           F   R SPRQ+D+++V GT+T KMA  L+R+YDQM EP+YV+++G C   GG +  SY V
Sbjct: 82  FEVTRNSPRQADMIMVLGTITYKMAPVLKRLYDQMAEPKYVVAVGGCTISGGPFIKSYHV 141

Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           V G D+I+PVD+Y+PGCPP  EA  YG++ LQ+KI+
Sbjct: 142 VNGIDKIIPVDVYIPGCPPRPEAFYYGMMQLQRKIK 177


>gi|325280124|ref|YP_004252666.1| NAD(P)H-quinone oxidoreductase subunit K [Odoribacter splanchnicus
           DSM 20712]
 gi|324311933|gb|ADY32486.1| NAD(P)H-quinone oxidoreductase subunit K [Odoribacter splanchnicus
           DSM 20712]
          Length = 201

 Score =  171 bits (432), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 77/141 (54%), Positives = 103/141 (73%), Gaps = 1/141 (0%)

Query: 39  LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APRASPRQSDVMI 97
           +V  +D L+ W R+ S+  +TF  +CC +E M     RYD  RFGF   RASPRQ+DV+I
Sbjct: 31  IVGCLDDLINWGRSNSVWPLTFATSCCGIEFMAVGAARYDFARFGFEVTRASPRQADVII 90

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGT+  KMA  LRR+YDQM EP+YVI+MG CA  GG +  SY VV+G ++I+PVD+YVP
Sbjct: 91  VAGTIVYKMAPVLRRLYDQMAEPKYVIAMGGCAISGGPFKKSYHVVKGVNQILPVDVYVP 150

Query: 158 GCPPTAEALIYGILLLQKKIR 178
           GCPP  E+L+YG++ LQ+KI+
Sbjct: 151 GCPPRPESLLYGMMQLQRKIK 171


>gi|311897891|dbj|BAJ30299.1| putative NADH-quinone oxidoreductase subunit B [Kitasatospora setae
           KM-6054]
          Length = 184

 Score =  171 bits (432), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 82/144 (56%), Positives = 104/144 (72%), Gaps = 2/144 (1%)

Query: 37  GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95
           GFL+TSV+    W R  SL   TFGLACCA+EMM     RYDL RFG    R SPRQ+D+
Sbjct: 10  GFLLTSVEAAAGWVRKASLFPATFGLACCAIEMMTTGAGRYDLARFGMEVFRGSPRQADL 69

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
           MIVAG ++ KMA  LR+VYDQMP P++VISMG CA+ GG ++ +Y++V+G D IVPVDIY
Sbjct: 70  MIVAGRVSQKMAPVLRQVYDQMPNPKWVISMGVCASSGGMFN-NYAIVQGVDHIVPVDIY 128

Query: 156 VPGCPPTAEALIYGILLLQKKIRR 179
           +PGCPP  E L+  I+ L +KI+ 
Sbjct: 129 LPGCPPRPEMLLDAIIKLHEKIQH 152


>gi|289641426|ref|ZP_06473590.1| NADH-quinone oxidoreductase, B subunit [Frankia symbiont of Datisca
           glomerata]
 gi|289508762|gb|EFD29697.1| NADH-quinone oxidoreductase, B subunit [Frankia symbiont of Datisca
           glomerata]
          Length = 267

 Score =  171 bits (432), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 80/142 (56%), Positives = 107/142 (75%), Gaps = 2/142 (1%)

Query: 37  GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95
           G L+T+V+++  W+R  SL   TFGLACCA+EMM     RYDL RFG    RASPRQ+D+
Sbjct: 10  GLLLTTVEKMANWSRRSSLWPATFGLACCAIEMMSTGAGRYDLARFGMEVFRASPRQADL 69

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
           MIVAG ++ KMA  LR++YDQMPEP++V+SMG CA+ GG ++ +Y++V+G D IVPVD+Y
Sbjct: 70  MIVAGRVSQKMAPVLRQIYDQMPEPKWVLSMGVCASSGGMFN-NYAIVQGVDHIVPVDMY 128

Query: 156 VPGCPPTAEALIYGILLLQKKI 177
           +PGCPP  E L+  IL L +KI
Sbjct: 129 LPGCPPRPEMLMDAILKLHEKI 150


>gi|291515382|emb|CBK64592.1| NADH dehydrogenase subunit B [Alistipes shahii WAL 8301]
          Length = 218

 Score =  171 bits (432), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 76/156 (48%), Positives = 109/156 (69%), Gaps = 3/156 (1%)

Query: 26  FSRISSEITHKGFLVTS--VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFG 83
             ++  E+   G  V +  +D+++ W R+ SL  +TF  +CC +E M     RYD  RFG
Sbjct: 22  LEQMVRELRENGTHVVAGCLDEVINWGRSNSLWPLTFATSCCGIEFMAVGAARYDFARFG 81

Query: 84  FA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142
           F   RASPRQ+D ++VAGT+T+KMA  LRR+YDQM +P+YVI++G CA  GG +  SY V
Sbjct: 82  FEVARASPRQADFIMVAGTITHKMAPVLRRLYDQMADPKYVIAVGGCAISGGPFKKSYHV 141

Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           V G DRI+PVD+Y+PGCPP  EA++YG++ LQ+K++
Sbjct: 142 VNGVDRILPVDVYIPGCPPRPEAMLYGLMQLQRKVK 177


>gi|320009203|gb|ADW04053.1| NADH-quinone oxidoreductase, B subunit [Streptomyces flavogriseus
           ATCC 33331]
          Length = 184

 Score =  171 bits (432), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 83/149 (55%), Positives = 106/149 (71%), Gaps = 2/149 (1%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RAS 89
            E    GF++T+V+Q   W R  S+   TFGLACCA+EMM     RYDL RFG    R S
Sbjct: 4   EEKLPSGFVLTTVEQAAGWVRKSSVFPATFGLACCAIEMMTTGAGRYDLARFGMEVFRGS 63

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQ+D+MIVAG ++ KMA  LR+VYDQMP P++VISMG CA+ GG ++ +Y++V+G D I
Sbjct: 64  PRQADLMIVAGRVSQKMAPVLRQVYDQMPSPKWVISMGVCASSGGMFN-NYAIVQGVDHI 122

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           VPVDIY+PGCPP  E LI  IL L +KI+
Sbjct: 123 VPVDIYLPGCPPRPEMLIDAILKLHQKIQ 151


>gi|284034118|ref|YP_003384049.1| NADH-quinone oxidoreductase subunit B [Kribbella flavida DSM 17836]
 gi|283813411|gb|ADB35250.1| NADH-quinone oxidoreductase, B subunit [Kribbella flavida DSM
           17836]
          Length = 178

 Score =  171 bits (432), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 81/136 (59%), Positives = 102/136 (75%), Gaps = 1/136 (0%)

Query: 43  VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS-PRQSDVMIVAGT 101
           V  L+ W R  SL    FGLACCA+E + ASM R+D  R G  P A  PRQ+D+M+V+GT
Sbjct: 19  VRYLLNWGRKYSLWVFNFGLACCAIEFIAASMGRHDFIRLGVIPFAPGPRQADLMVVSGT 78

Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP 161
           +T+KMA A++R+YDQMPEP+YVIS GSC+N GG Y  SY V +G D+I+PVD+YVPGCPP
Sbjct: 79  VTDKMAPAIKRLYDQMPEPKYVISFGSCSNSGGPYWDSYCVTKGVDQIIPVDVYVPGCPP 138

Query: 162 TAEALIYGILLLQKKI 177
             EAL+ GIL LQ+KI
Sbjct: 139 RPEALLQGILKLQEKI 154


>gi|21222946|ref|NP_628725.1| NADH dehydrogenase subunit B [Streptomyces coelicolor A3(2)]
 gi|256785940|ref|ZP_05524371.1| NADH dehydrogenase subunit B [Streptomyces lividans TK24]
 gi|329935996|ref|ZP_08285796.1| NADH dehydrogenase subunit B [Streptomyces griseoaurantiacus M045]
 gi|81625663|sp|Q9XAQ5|NUOB1_STRCO RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName:
           Full=NADH dehydrogenase I subunit B 1; AltName:
           Full=NDH-1 subunit B 1
 gi|5042276|emb|CAB44530.1| NuoB, NADH dehydrogenase subunit [Streptomyces coelicolor A3(2)]
 gi|329304474|gb|EGG48352.1| NADH dehydrogenase subunit B [Streptomyces griseoaurantiacus M045]
          Length = 184

 Score =  171 bits (432), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 82/149 (55%), Positives = 106/149 (71%), Gaps = 2/149 (1%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RAS 89
            E    GFL+T+V+Q   W R  S+   TFGLACCA+EMM     RYDL RFG    R S
Sbjct: 4   EEKLPSGFLLTTVEQAAGWVRKSSVFPATFGLACCAIEMMTTGAGRYDLARFGMEVFRGS 63

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQ+D+MIVAG ++ KMA  LR+VYDQMP P++VISMG CA+ GG ++ +Y++V+G D +
Sbjct: 64  PRQADLMIVAGRVSQKMAPVLRQVYDQMPNPKWVISMGVCASSGGMFN-NYAIVQGVDHV 122

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           VPVDIY+PGCPP  E L+  IL L +KI+
Sbjct: 123 VPVDIYLPGCPPRPEMLMDAILKLHQKIQ 151


>gi|167752198|ref|ZP_02424325.1| hypothetical protein ALIPUT_00440 [Alistipes putredinis DSM 17216]
 gi|167660439|gb|EDS04569.1| hypothetical protein ALIPUT_00440 [Alistipes putredinis DSM 17216]
          Length = 219

 Score =  171 bits (432), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 73/137 (53%), Positives = 102/137 (74%), Gaps = 1/137 (0%)

Query: 43  VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQSDVMIVAGT 101
           +D+++ W R+ SL  +TF  +CC +E M     RYD  RFGF   RASPRQ+D ++VAGT
Sbjct: 41  LDEVINWGRSNSLWPLTFATSCCGIEFMAVGAARYDFARFGFEVARASPRQADFIMVAGT 100

Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP 161
           +T+KMA  LRR+YDQM +P+YVI+ GSCA  GG +  SY VV G D+I+PVD+Y+PGCPP
Sbjct: 101 ITHKMAPVLRRLYDQMADPKYVIATGSCAVSGGPFKKSYHVVNGVDKILPVDVYIPGCPP 160

Query: 162 TAEALIYGILLLQKKIR 178
             EA++YG++ LQ+K++
Sbjct: 161 RPEAMLYGMMQLQRKVK 177


>gi|116622878|ref|YP_825034.1| NADH-quinone oxidoreductase subunit B [Candidatus Solibacter
           usitatus Ellin6076]
 gi|122253898|sp|Q020B6|NUOB1_SOLUE RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName:
           Full=NADH dehydrogenase I subunit B 1; AltName:
           Full=NDH-1 subunit B 1
 gi|116226040|gb|ABJ84749.1| NADH-quinone oxidoreductase, B subunit [Candidatus Solibacter
           usitatus Ellin6076]
          Length = 188

 Score =  171 bits (432), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 78/144 (54%), Positives = 109/144 (75%), Gaps = 2/144 (1%)

Query: 35  HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQS 93
            + F+ T+VD +  WAR  +L  +TFGLACCA+EM+ +S  R+D+ RFG    R SPRQS
Sbjct: 10  EQNFITTNVDHVFNWARKSALWPLTFGLACCAIEMIASSTSRFDIARFGAEVFRPSPRQS 69

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD 153
           D+MIVAGT+T KMA  L+R++DQMP+P++ ISMG+C++ GG ++ +Y+V++G D+IVPVD
Sbjct: 70  DLMIVAGTVTLKMAPVLKRIWDQMPDPKWCISMGACSSVGGPFN-TYAVLQGVDKIVPVD 128

Query: 154 IYVPGCPPTAEALIYGILLLQKKI 177
           +YV GCPP  E L Y +L LQ KI
Sbjct: 129 VYVTGCPPRPENLFYALLKLQDKI 152


>gi|302536169|ref|ZP_07288511.1| NADH dehydrogenase subunit B [Streptomyces sp. C]
 gi|302445064|gb|EFL16880.1| NADH dehydrogenase subunit B [Streptomyces sp. C]
          Length = 184

 Score =  171 bits (432), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 83/149 (55%), Positives = 106/149 (71%), Gaps = 2/149 (1%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RAS 89
            E    GFL+T+V+Q   W R  S+   TFGLACCA+EMM     RYDL RFG    R S
Sbjct: 4   EEKLPSGFLLTTVEQAAGWVRKSSVFPATFGLACCAIEMMTTGAGRYDLARFGMEVFRGS 63

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQ+D+MIVAG ++ KMA  LR+VYDQMP P++VISMG CA+ GG ++ +Y++V+G D I
Sbjct: 64  PRQADLMIVAGRVSQKMAPVLRQVYDQMPAPKWVISMGVCASSGGMFN-NYAIVQGVDHI 122

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           VPVDIY+PGCPP  E L+  IL L +KI+
Sbjct: 123 VPVDIYLPGCPPRPEMLMDAILKLHQKIQ 151


>gi|330465203|ref|YP_004402946.1| NADH dehydrogenase subunit B [Verrucosispora maris AB-18-032]
 gi|328808174|gb|AEB42346.1| NADH dehydrogenase subunit B [Verrucosispora maris AB-18-032]
          Length = 225

 Score =  171 bits (432), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 81/142 (57%), Positives = 109/142 (76%), Gaps = 2/142 (1%)

Query: 37  GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95
           G L+TSV++LV W+R  S+   TFGLACCA+EMM A  P YD+ R+G    RASPRQ+D+
Sbjct: 10  GVLLTSVEKLVNWSRKSSVWGATFGLACCAIEMMAAGGPHYDMGRWGMEVFRASPRQADL 69

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
           MIVAG ++ KMA  LR++YDQM EPR+V+SMG CA+ GG ++ +Y++V+G D +VPVD+Y
Sbjct: 70  MIVAGRVSQKMAPVLRQIYDQMAEPRWVLSMGVCASSGGMFN-NYAIVQGVDHVVPVDMY 128

Query: 156 VPGCPPTAEALIYGILLLQKKI 177
           +PGCPP  E LI  IL L++KI
Sbjct: 129 LPGCPPRPEMLIDAILKLREKI 150


>gi|238062212|ref|ZP_04606921.1| NADH-quinone oxidoreductase, B subunit [Micromonospora sp. ATCC
           39149]
 gi|237884023|gb|EEP72851.1| NADH-quinone oxidoreductase, B subunit [Micromonospora sp. ATCC
           39149]
          Length = 225

 Score =  171 bits (432), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 82/142 (57%), Positives = 109/142 (76%), Gaps = 2/142 (1%)

Query: 37  GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95
           G L+TSV++LV W+R  S+   TFGLACCA+EMM A  P YD+ R+G    RASPRQ+D+
Sbjct: 10  GVLLTSVEKLVNWSRKSSVWGATFGLACCAIEMMAAGGPHYDMGRWGMEVFRASPRQADL 69

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
           MIVAG ++ KMA  LR++YDQM EPR+V+SMG CA+ GG ++ +Y++V+G D IVPVD+Y
Sbjct: 70  MIVAGRVSQKMAPVLRQIYDQMAEPRWVLSMGVCASSGGMFN-NYAIVQGVDHIVPVDMY 128

Query: 156 VPGCPPTAEALIYGILLLQKKI 177
           +PGCPP  E LI  IL L++KI
Sbjct: 129 LPGCPPRPEMLIDAILKLREKI 150


>gi|268317701|ref|YP_003291420.1| NADH-quinone oxidoreductase, B subunit [Rhodothermus marinus DSM
           4252]
 gi|262335235|gb|ACY49032.1| NADH-quinone oxidoreductase, B subunit [Rhodothermus marinus DSM
           4252]
          Length = 194

 Score =  171 bits (432), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 80/144 (55%), Positives = 110/144 (76%), Gaps = 2/144 (1%)

Query: 36  KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APRASPRQSD 94
           +GFL T +D L+ WAR+ SLM M  GLACCA+EMM  + P+YD+ RFG  A R SPRQ+D
Sbjct: 6   EGFLTTRLDVLLNWARSNSLMPMPMGLACCAIEMMAFAGPKYDVARFGSEAMRFSPRQAD 65

Query: 95  VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154
           +MIVAG  + KMA A+RRV+DQMP+P++ I+MG+CA+ GG  H  Y VV+G D  +PVD+
Sbjct: 66  LMIVAGWCSYKMAHAIRRVWDQMPDPKWCIAMGACASTGG-MHRCYGVVQGVDNFLPVDV 124

Query: 155 YVPGCPPTAEALIYGILLLQKKIR 178
           Y+PGCPP  EA+++ ++ +Q+KIR
Sbjct: 125 YIPGCPPRPEAVLHALMDIQEKIR 148


>gi|147669451|ref|YP_001214269.1| NADH-quinone oxidoreductase, B subunit [Dehalococcoides sp. BAV1]
 gi|238055291|sp|A5FQY4|NUOB_DEHSB RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|146270399|gb|ABQ17391.1| NADH dehydrogenase subunit B [Dehalococcoides sp. BAV1]
          Length = 200

 Score =  170 bits (431), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 87/180 (48%), Positives = 121/180 (67%), Gaps = 5/180 (2%)

Query: 6   VNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACC 65
           V Q   +G +S   +  D     ++ E    G  +TSV++++ W+R  SL  + FGLACC
Sbjct: 24  VIQSFRTGHTSPYPDPADW----LNGEEPPPGVFITSVEKVLNWSRHYSLWPVMFGLACC 79

Query: 66  AVEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           A+EMM  +  R+DL RFG    RASPRQ+D+MIVAGTLT KMA  L+R+YDQMPEP++V+
Sbjct: 80  AIEMMCMAASRWDLARFGMDIFRASPRQADLMIVAGTLTWKMAPWLKRIYDQMPEPKWVL 139

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           +MG+C   GG +  SYSVV G + +VPVD+YVPGCPP  EAL+  I+ + +KI +   +K
Sbjct: 140 AMGACGTSGGLFRDSYSVVPGFNLVVPVDVYVPGCPPRPEALMRAIMDIHEKIDKTCILK 199


>gi|307696866|gb|ADN85879.1| NADH-ubiquinone oxidoreductase subunit 10 [Nyctotherus ovalis]
          Length = 155

 Score =  170 bits (431), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 73/128 (57%), Positives = 100/128 (78%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           FL T    L++WAR G++  +TFGLACCA+EMM  +  RYD++RFGF  R SPR  D +I
Sbjct: 4   FLTTRSTALISWARGGAMWPLTFGLACCAIEMMHMTASRYDMDRFGFLFRPSPRHVDFLI 63

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           ++GT+T KM+  ++R+Y Q+ +P++VISMGSCAN GG Y+YSY+VVRG D I+PVD+Y+P
Sbjct: 64  ISGTVTYKMSYTVKRLYSQLLDPKWVISMGSCANTGGLYYYSYAVVRGVDNIIPVDVYIP 123

Query: 158 GCPPTAEA 165
           GCPP AE+
Sbjct: 124 GCPPHAES 131


>gi|320106231|ref|YP_004181821.1| NADH-quinone oxidoreductase subunit B [Terriglobus saanensis
           SP1PR4]
 gi|319924752|gb|ADV81827.1| NADH-quinone oxidoreductase, B subunit [Terriglobus saanensis
           SP1PR4]
          Length = 205

 Score =  170 bits (431), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 77/145 (53%), Positives = 110/145 (75%), Gaps = 2/145 (1%)

Query: 36  KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSD 94
           +G ++ S+D  + W R  S+  MTFGLACCA+EMM     RYD+ RFG    R SPRQSD
Sbjct: 50  EGIVLASMDAAINWVRKNSVWPMTFGLACCAIEMMSMGGSRYDIARFGAEVFRPSPRQSD 109

Query: 95  VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154
           +MI+AG ++ KMA  +RR+Y+QMPEP++VISMG+CA  GG ++ +Y++++G ++I+PVD+
Sbjct: 110 LMIIAGRVSQKMAPVIRRLYEQMPEPKWVISMGACATSGGVFN-NYALLQGVNQIIPVDL 168

Query: 155 YVPGCPPTAEALIYGILLLQKKIRR 179
           YVPGCPP  E L+Y I LLQ+KI++
Sbjct: 169 YVPGCPPRPEQLLYAITLLQEKIQQ 193


>gi|282860763|ref|ZP_06269829.1| NADH-quinone oxidoreductase, B subunit [Streptomyces sp. ACTE]
 gi|282564499|gb|EFB70035.1| NADH-quinone oxidoreductase, B subunit [Streptomyces sp. ACTE]
          Length = 211

 Score =  170 bits (431), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 80/135 (59%), Positives = 103/135 (76%), Gaps = 1/135 (0%)

Query: 46  LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA-SPRQSDVMIVAGTLTN 104
           ++ W R  SL    FGLACCA+E + ASM R+D  R G  P A  PRQ+D+M+V+GT+T+
Sbjct: 41  VLNWGRRYSLWVFNFGLACCAIEFIAASMARHDFMRMGVIPFAPGPRQADLMVVSGTVTD 100

Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164
           KMA A+RR+Y+QMPEP+YVIS G+C+N GG Y  SYSV +G D+I+PVD+YVPGCPP  E
Sbjct: 101 KMAPAVRRLYEQMPEPKYVISFGACSNCGGPYWDSYSVTKGVDQIIPVDVYVPGCPPRPE 160

Query: 165 ALIYGILLLQKKIRR 179
           AL+ GIL LQ+KI R
Sbjct: 161 ALLQGILKLQEKIAR 175


>gi|297192751|ref|ZP_06910149.1| NADH dehydrogenase subunit I B [Streptomyces pristinaespiralis ATCC
           25486]
 gi|297151481|gb|EDY64969.2| NADH dehydrogenase subunit I B [Streptomyces pristinaespiralis ATCC
           25486]
          Length = 232

 Score =  170 bits (431), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 80/135 (59%), Positives = 103/135 (76%), Gaps = 1/135 (0%)

Query: 46  LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS-PRQSDVMIVAGTLTN 104
           ++ W R  SL    FGLACCA+E + ASM R+D  R G  P A  PRQ+D+MIV+GT+T+
Sbjct: 48  ILNWGRRYSLWVFNFGLACCAIEFIAASMARHDFIRLGVIPFAPGPRQADLMIVSGTVTD 107

Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164
           KMA A++R+Y+QMPEP+YVIS G+C+N GG Y  SYSV +G D+I+PVD+YVPGCPP  E
Sbjct: 108 KMAPAVKRLYEQMPEPKYVISFGACSNCGGPYWDSYSVTKGVDQIIPVDVYVPGCPPRPE 167

Query: 165 ALIYGILLLQKKIRR 179
           AL+ GIL LQ+KI R
Sbjct: 168 ALLQGILKLQEKIAR 182


>gi|332885916|gb|EGK06160.1| NADH-quinone oxidoreductase subunit B [Dysgonomonas mossii DSM
           22836]
          Length = 194

 Score =  170 bits (431), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 76/141 (53%), Positives = 102/141 (72%), Gaps = 1/141 (0%)

Query: 39  LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APRASPRQSDVMI 97
           +V  +D L+ W R+ S+  + F  +CC +E M ++  RYDL RFG    R SPRQ+D M+
Sbjct: 37  IVGKLDDLINWGRSNSVWPLAFATSCCGIEFMASAAARYDLARFGMEVTRNSPRQADTMV 96

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGT+ +KMA  L+RVYDQM EP+YV++MGSCA  GG +  SY VV+G D I+PVD+YVP
Sbjct: 97  VAGTIVHKMAPLLKRVYDQMAEPKYVVAMGSCAISGGPFVDSYHVVKGIDEIIPVDVYVP 156

Query: 158 GCPPTAEALIYGILLLQKKIR 178
           GCPP  EAL YG++ LQ+KI+
Sbjct: 157 GCPPRPEALFYGLMQLQRKIK 177


>gi|297159509|gb|ADI09221.1| NADH dehydrogenase subunit B [Streptomyces bingchenggensis BCW-1]
          Length = 184

 Score =  170 bits (431), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 83/144 (57%), Positives = 105/144 (72%), Gaps = 2/144 (1%)

Query: 37  GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95
           GFL+T+V+Q    AR  S+   TFGLACCA+EMM     RYDL RFG    R SPRQ+D+
Sbjct: 10  GFLLTTVEQAAGLARKSSVFPATFGLACCAIEMMTTGAGRYDLARFGMEVFRGSPRQADL 69

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
           MIVAG ++ KMA  LR+VYDQMP P++VISMG CA+ GG ++ +Y++V+G D IVPVDIY
Sbjct: 70  MIVAGRVSQKMAPVLRQVYDQMPNPKWVISMGVCASSGGMFN-NYAIVQGVDHIVPVDIY 128

Query: 156 VPGCPPTAEALIYGILLLQKKIRR 179
           +PGCPP  E L+  IL L +KIR 
Sbjct: 129 LPGCPPRPEMLLDAILKLHQKIRE 152


>gi|254883413|ref|ZP_05256123.1| NADH-quinone oxidoreductase [Bacteroides sp. 4_3_47FAA]
 gi|254836206|gb|EET16515.1| NADH-quinone oxidoreductase [Bacteroides sp. 4_3_47FAA]
          Length = 205

 Score =  170 bits (431), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 74/141 (52%), Positives = 104/141 (73%), Gaps = 1/141 (0%)

Query: 39  LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APRASPRQSDVMI 97
           LV  +D L+ W R+ SL  +TF  +CC +E M     RYD  RFGF   RASPRQ+D+++
Sbjct: 44  LVGCLDDLINWGRSNSLWPLTFATSCCGIEFMAVGAARYDFARFGFEVARASPRQADMIM 103

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGT+T+KMA  L+R+YDQM +P+YVI++G CA  GG +  SY V+ G D+I+PVD+Y+P
Sbjct: 104 VAGTITHKMAPVLKRLYDQMADPKYVIAVGGCAISGGPFKKSYHVLNGVDKILPVDVYIP 163

Query: 158 GCPPTAEALIYGILLLQKKIR 178
           GCPP  EAL+YG++ LQ+K++
Sbjct: 164 GCPPRPEALLYGMIQLQRKVK 184


>gi|212693812|ref|ZP_03301940.1| hypothetical protein BACDOR_03333 [Bacteroides dorei DSM 17855]
 gi|237709340|ref|ZP_04539821.1| trifunctional NADH dehydrogenase I subunit B/C/D [Bacteroides sp.
           9_1_42FAA]
 gi|237724574|ref|ZP_04555055.1| trifunctional NADH dehydrogenase I subunit B/C/D [Bacteroides sp.
           D4]
 gi|265755015|ref|ZP_06089929.1| NADH-quinone oxidoreductase [Bacteroides sp. 3_1_33FAA]
 gi|212663701|gb|EEB24275.1| hypothetical protein BACDOR_03333 [Bacteroides dorei DSM 17855]
 gi|229437133|gb|EEO47210.1| trifunctional NADH dehydrogenase I subunit B/C/D [Bacteroides dorei
           5_1_36/D4]
 gi|229456725|gb|EEO62446.1| trifunctional NADH dehydrogenase I subunit B/C/D [Bacteroides sp.
           9_1_42FAA]
 gi|263234626|gb|EEZ20205.1| NADH-quinone oxidoreductase [Bacteroides sp. 3_1_33FAA]
          Length = 198

 Score =  170 bits (431), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 74/141 (52%), Positives = 104/141 (73%), Gaps = 1/141 (0%)

Query: 39  LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APRASPRQSDVMI 97
           LV  +D L+ W R+ SL  +TF  +CC +E M     RYD  RFGF   RASPRQ+D+++
Sbjct: 37  LVGCLDDLINWGRSNSLWPLTFATSCCGIEFMAVGAARYDFARFGFEVARASPRQADMIM 96

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGT+T+KMA  L+R+YDQM +P+YVI++G CA  GG +  SY V+ G D+I+PVD+Y+P
Sbjct: 97  VAGTITHKMAPVLKRLYDQMADPKYVIAVGGCAISGGPFKKSYHVLNGVDKILPVDVYIP 156

Query: 158 GCPPTAEALIYGILLLQKKIR 178
           GCPP  EAL+YG++ LQ+K++
Sbjct: 157 GCPPRPEALLYGMIQLQRKVK 177


>gi|154508638|ref|ZP_02044280.1| hypothetical protein ACTODO_01139 [Actinomyces odontolyticus ATCC
           17982]
 gi|293191717|ref|ZP_06609274.1| NADH dehydrogenase I subunit B [Actinomyces odontolyticus F0309]
 gi|153798272|gb|EDN80692.1| hypothetical protein ACTODO_01139 [Actinomyces odontolyticus ATCC
           17982]
 gi|292820489|gb|EFF79471.1| NADH dehydrogenase I subunit B [Actinomyces odontolyticus F0309]
          Length = 184

 Score =  170 bits (431), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 79/142 (55%), Positives = 112/142 (78%), Gaps = 2/142 (1%)

Query: 37  GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95
           G  +TSV++++  AR  S   +T GLACCA+EMM A  PR+D+ RFG    RASPR +D+
Sbjct: 10  GIALTSVEKVLGLARKYSQWPVTMGLACCAIEMMAAGTPRFDMARFGLEVFRASPRHADM 69

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
           MIV+G +++KMA  +RRVYD MPEP++VISMG+CA+ GG ++ +Y+VV+GCD IVPVD+Y
Sbjct: 70  MIVSGRVSHKMAPIIRRVYDSMPEPKWVISMGACASSGGVFN-NYAVVQGCDHIVPVDVY 128

Query: 156 VPGCPPTAEALIYGILLLQKKI 177
           +PGCPP  EALI+ +L+L+++I
Sbjct: 129 LPGCPPRPEALIHAVLVLREQI 150


>gi|294674399|ref|YP_003575015.1| proton-translocating NADH-quinone oxidoreductase subunit B
           [Prevotella ruminicola 23]
 gi|294473976|gb|ADE83365.1| putative proton-translocating NADH-quinone oxidoreductase, B
           subunit [Prevotella ruminicola 23]
          Length = 263

 Score =  170 bits (431), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 76/159 (47%), Positives = 110/159 (69%), Gaps = 3/159 (1%)

Query: 23  DADFSRISSEITHKGFLVT--SVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLE 80
           +    +I  E+   G  V   S+DQL+ W R+ SL  +TF  +CC +E M     RYD  
Sbjct: 19  NESLEKIIDELHEGGVNVVTGSLDQLINWGRSNSLWSLTFATSCCGIEFMACGCSRYDFA 78

Query: 81  RFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS 139
           RFGF   R SPRQ+D+++ AGT+T+KMA AL+R+YDQM EP+YV+++G CA  GG +  S
Sbjct: 79  RFGFEVTRNSPRQADLIMCAGTITHKMAPALKRLYDQMAEPKYVVAVGGCAISGGPFKSS 138

Query: 140 YSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           Y VV+G + IVPVD+++PGCPP  EA++YG++ LQ+K++
Sbjct: 139 YHVVKGIEEIVPVDVFIPGCPPRPEAIMYGMMQLQRKVK 177


>gi|239980151|ref|ZP_04702675.1| NADH dehydrogenase subunit B [Streptomyces albus J1074]
 gi|291452006|ref|ZP_06591396.1| NuoB [Streptomyces albus J1074]
 gi|291354955|gb|EFE81857.1| NuoB [Streptomyces albus J1074]
          Length = 184

 Score =  170 bits (431), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 81/149 (54%), Positives = 106/149 (71%), Gaps = 2/149 (1%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RAS 89
            E    GFL+T+V+Q   W R  S+   TFGLACCA+EMM     RYDL RFG    R S
Sbjct: 4   EEKLPSGFLLTTVEQAAGWVRKSSMFPATFGLACCAIEMMTTGAGRYDLARFGMEVFRGS 63

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQ+D+MIVAG ++ KMA  LR+VYDQMP P++VISMG CA+ GG ++ +Y++V+G D I
Sbjct: 64  PRQADLMIVAGRVSQKMAPVLRQVYDQMPNPKWVISMGVCASSGGMFN-NYAIVQGVDHI 122

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           VPVDIY+PGCPP  E L+  I+ L +K++
Sbjct: 123 VPVDIYLPGCPPRPEMLVDAIVKLHQKVQ 151


>gi|82658723|gb|ABB88530.1| menaquinone oxidoreductase [Streptomyces sp. Eco86]
          Length = 184

 Score =  170 bits (431), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 82/149 (55%), Positives = 106/149 (71%), Gaps = 2/149 (1%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RAS 89
            E    GFL+++V+Q   W R  S+   TFGLACCA E+M A   RYDL RFG    R S
Sbjct: 4   EESLPSGFLLSTVEQAAGWVRKASVFPATFGLACCAFELMAAGAGRYDLARFGMEVFRGS 63

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQ+D+MIVAG ++ KMA  LR++YDQMP P++VISMG CA+ GG ++ +Y++V+G D I
Sbjct: 64  PRQADLMIVAGRVSQKMAPVLRQIYDQMPNPKWVISMGVCASSGGMFN-NYAIVQGVDHI 122

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           VPVDIY+PGCPP  E L+  IL L +KIR
Sbjct: 123 VPVDIYLPGCPPRPEMLMDAILKLHEKIR 151


>gi|307328622|ref|ZP_07607795.1| NADH-quinone oxidoreductase, B subunit [Streptomyces violaceusniger
           Tu 4113]
 gi|306885734|gb|EFN16747.1| NADH-quinone oxidoreductase, B subunit [Streptomyces violaceusniger
           Tu 4113]
          Length = 184

 Score =  170 bits (431), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 84/150 (56%), Positives = 106/150 (70%), Gaps = 2/150 (1%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RAS 89
            E    GFL+T+V+Q    AR  S+   TFGLACCA+EMM     RYDL RFG    R S
Sbjct: 4   EEKLPSGFLLTTVEQAAGLARKSSVFPATFGLACCAIEMMTTGAGRYDLARFGMEVFRGS 63

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQ+D+MIVAG ++ KMA  LR+VYDQMP P++VISMG CA+ GG ++ +Y++V+G D I
Sbjct: 64  PRQADLMIVAGRVSQKMAPVLRQVYDQMPNPKWVISMGVCASSGGMFN-NYAIVQGVDHI 122

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           VPVDIY+PGCPP  E L+  IL L +KIR 
Sbjct: 123 VPVDIYLPGCPPRPEMLLDSILKLHQKIRE 152


>gi|253570156|ref|ZP_04847565.1| NADH-quinone oxidoreductase [Bacteroides sp. 1_1_6]
 gi|251840537|gb|EES68619.1| NADH-quinone oxidoreductase [Bacteroides sp. 1_1_6]
          Length = 197

 Score =  170 bits (431), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 77/162 (47%), Positives = 111/162 (68%), Gaps = 6/162 (3%)

Query: 18  SLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRY 77
           SLEK+  + +   + +      +  +D LV W R+ SL  +TF  +CC +E M     RY
Sbjct: 22  SLEKLVKELNAGGANV-----FLGVLDDLVNWGRSNSLWPLTFATSCCGIEFMALGAARY 76

Query: 78  DLERFGF-APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY 136
           D+ RFGF   RASPRQ+D+++V GT+TNKMA  L+R+YDQMP+P+YV+++G CA  GG +
Sbjct: 77  DMARFGFEVARASPRQADMIMVCGTITNKMAPVLKRLYDQMPDPKYVVAVGGCAVSGGPF 136

Query: 137 HYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
             SY VV G D+I+PVD+Y+PGCPP  EA  YG++ LQ+K++
Sbjct: 137 KKSYHVVNGVDKILPVDVYIPGCPPRPEAFYYGMMQLQRKVK 178


>gi|302864902|ref|YP_003833539.1| NADH-quinone oxidoreductase subunit B [Micromonospora aurantiaca
           ATCC 27029]
 gi|315501187|ref|YP_004080074.1| NADH-quinone oxidoreductase, b subunit [Micromonospora sp. L5]
 gi|302567761|gb|ADL43963.1| NADH-quinone oxidoreductase, B subunit [Micromonospora aurantiaca
           ATCC 27029]
 gi|315407806|gb|ADU05923.1| NADH-quinone oxidoreductase, B subunit [Micromonospora sp. L5]
          Length = 226

 Score =  170 bits (431), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 81/142 (57%), Positives = 108/142 (76%), Gaps = 2/142 (1%)

Query: 37  GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95
           G L+TSV++LV W R  S+   TFGLACCA+EMM A  P YD+ R+G    RASPRQ+D+
Sbjct: 10  GVLLTSVEKLVNWTRKTSVWGATFGLACCAIEMMAAGGPHYDMGRWGMEVFRASPRQADL 69

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
           MIVAG ++ KMA  LR++YDQM EPR+VISMG CA+ GG ++ +Y++V+G D +VPVD+Y
Sbjct: 70  MIVAGRVSQKMAPVLRQIYDQMAEPRWVISMGVCASSGGMFN-NYAIVQGVDHVVPVDMY 128

Query: 156 VPGCPPTAEALIYGILLLQKKI 177
           +PGCPP  E LI  +L L++KI
Sbjct: 129 LPGCPPRPEMLIDAVLKLREKI 150


>gi|302536203|ref|ZP_07288545.1| NADH dehydrogenase subunit NuoB2 [Streptomyces sp. C]
 gi|302445098|gb|EFL16914.1| NADH dehydrogenase subunit NuoB2 [Streptomyces sp. C]
          Length = 203

 Score =  170 bits (431), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 80/135 (59%), Positives = 103/135 (76%), Gaps = 1/135 (0%)

Query: 46  LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS-PRQSDVMIVAGTLTN 104
           ++ W R  SL    FGLACCA+E + ASM R+D  R G  P A  PRQ+D+MIV+GT+T+
Sbjct: 38  VLNWGRRYSLWVFNFGLACCAIEFIAASMARHDFIRLGVIPFAPGPRQADLMIVSGTVTD 97

Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164
           KMA A++R+Y+QMPEP+YVIS G+C+N GG Y  SYSV +G D+I+PVD+YVPGCPP  E
Sbjct: 98  KMAPAVKRLYEQMPEPKYVISFGACSNCGGPYWDSYSVTKGVDQIIPVDVYVPGCPPRPE 157

Query: 165 ALIYGILLLQKKIRR 179
           AL+ GIL LQ+KI R
Sbjct: 158 ALLQGILKLQEKIAR 172


>gi|291303411|ref|YP_003514689.1| NADH-quinone oxidoreductase subunit B [Stackebrandtia nassauensis
           DSM 44728]
 gi|290572631|gb|ADD45596.1| NADH-quinone oxidoreductase, B subunit [Stackebrandtia nassauensis
           DSM 44728]
          Length = 188

 Score =  170 bits (431), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 78/142 (54%), Positives = 106/142 (74%), Gaps = 1/142 (0%)

Query: 37  GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA-SPRQSDV 95
           G L   +  ++ W R  SL    FGLACCA+E + +SM R+D  R G  P A  PRQ+D+
Sbjct: 15  GVLGEPIRFVLNWGRRYSLWVFNFGLACCAIEFIASSMGRHDFMRLGVIPFAHGPRQADL 74

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
           M+V+GT+T+KMA A++R+YDQMPEP+YVIS G+C+N GG Y  SYSV +G D+++PVD+Y
Sbjct: 75  MVVSGTVTDKMAPAIKRLYDQMPEPKYVISFGACSNSGGPYWDSYSVTKGVDQLIPVDVY 134

Query: 156 VPGCPPTAEALIYGILLLQKKI 177
           VPGCPP  EAL++GI+ LQ+KI
Sbjct: 135 VPGCPPRPEALLHGIMRLQEKI 156


>gi|239943477|ref|ZP_04695414.1| NADH dehydrogenase subunit B [Streptomyces roseosporus NRRL 15998]
 gi|239989931|ref|ZP_04710595.1| NADH dehydrogenase subunit B [Streptomyces roseosporus NRRL 11379]
 gi|291446948|ref|ZP_06586338.1| NADH dehydrogenase subunit B [Streptomyces roseosporus NRRL 15998]
 gi|291349895|gb|EFE76799.1| NADH dehydrogenase subunit B [Streptomyces roseosporus NRRL 15998]
          Length = 184

 Score =  170 bits (431), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 82/149 (55%), Positives = 106/149 (71%), Gaps = 2/149 (1%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RAS 89
            E    GF++T+V+Q   W R  S+   TFGLACCA+EMM     RYDL RFG    R S
Sbjct: 4   EEKLPSGFVLTTVEQAAGWVRKASVFPATFGLACCAIEMMTTGAGRYDLARFGMEVFRGS 63

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQ+D+MIVAG ++ KMA  LR+VYDQMP P++VISMG CA+ GG ++ +Y++V+G D I
Sbjct: 64  PRQADLMIVAGRVSQKMAPVLRQVYDQMPNPKWVISMGVCASSGGMFN-NYAIVQGVDHI 122

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           VPVDIY+PGCPP  E L+  IL L +KI+
Sbjct: 123 VPVDIYLPGCPPRPEMLLDAILKLHQKIQ 151


>gi|225872572|ref|YP_002754027.1| NADH dehydrogenase I, B subunit [Acidobacterium capsulatum ATCC
           51196]
 gi|225792841|gb|ACO32931.1| NADH dehydrogenase I, B subunit [Acidobacterium capsulatum ATCC
           51196]
          Length = 186

 Score =  170 bits (430), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 75/144 (52%), Positives = 108/144 (75%), Gaps = 2/144 (1%)

Query: 36  KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSD 94
           +G  +T++D  + W R  S+  MTFGLACCA+EMM     R+D+ RFG    R SPRQ+D
Sbjct: 31  EGVFLTTLDSAINWVRKSSIWPMTFGLACCAIEMMSMGASRFDVARFGAEVFRPSPRQAD 90

Query: 95  VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154
           +M++AG ++ KMA  +RR+YDQMPEP++VISMG+CA  GG ++ +Y++++G ++++PVDI
Sbjct: 91  LMVIAGRVSQKMAPVIRRLYDQMPEPKWVISMGACATSGGVFN-NYALLQGVNQVIPVDI 149

Query: 155 YVPGCPPTAEALIYGILLLQKKIR 178
           YVPGCPP  E LIY   LLQ+KI+
Sbjct: 150 YVPGCPPRPEQLIYAFTLLQEKIQ 173


>gi|224026051|ref|ZP_03644417.1| hypothetical protein BACCOPRO_02804 [Bacteroides coprophilus DSM
           18228]
 gi|224019287|gb|EEF77285.1| hypothetical protein BACCOPRO_02804 [Bacteroides coprophilus DSM
           18228]
          Length = 200

 Score =  170 bits (430), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 74/143 (51%), Positives = 104/143 (72%), Gaps = 1/143 (0%)

Query: 37  GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APRASPRQSDV 95
           G ++ ++D+L+ W R+ SL  +TFG +CCA+E M     RYD+ RFGF   R SPRQ+D+
Sbjct: 35  GIIIGTIDELIEWGRSNSLWSLTFGTSCCAIEFMALGAARYDMARFGFEVTRNSPRQADM 94

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
           ++V GT+T KMA  L+R+YDQM EP+YVI++G C   GG +  SY VV G D+I+PVD+Y
Sbjct: 95  IMVLGTITYKMAPVLKRLYDQMAEPKYVIAVGGCTISGGPFIKSYHVVNGIDKIIPVDVY 154

Query: 156 VPGCPPTAEALIYGILLLQKKIR 178
           +PGCPP  EA  YG++ LQ+KI+
Sbjct: 155 IPGCPPRPEAFYYGMMQLQRKIK 177


>gi|299137549|ref|ZP_07030730.1| NADH-quinone oxidoreductase, B subunit [Acidobacterium sp.
           MP5ACTX8]
 gi|298600190|gb|EFI56347.1| NADH-quinone oxidoreductase, B subunit [Acidobacterium sp.
           MP5ACTX8]
          Length = 205

 Score =  170 bits (430), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 77/148 (52%), Positives = 110/148 (74%), Gaps = 2/148 (1%)

Query: 32  EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASP 90
           E   +G ++ S+D  + W R  S+  MTFGLACCA+EMM     RYD+ RFG    R SP
Sbjct: 46  EEQPEGVVLASLDAAINWVRKNSVWPMTFGLACCAIEMMSMGGSRYDIARFGAEVFRPSP 105

Query: 91  RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150
           RQSD+MI+AG ++ KMA  +RR+Y+QMPEP++VISMG+CA  GG ++ +Y++++G ++++
Sbjct: 106 RQSDLMIIAGRVSQKMAPVIRRLYEQMPEPKWVISMGACATSGGVFN-NYALLQGVNQVI 164

Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIR 178
           PVD+YVPGCPP  E L+Y I LLQ+KI+
Sbjct: 165 PVDVYVPGCPPRPEQLLYAITLLQEKIQ 192


>gi|182436717|ref|YP_001824436.1| putative NADH dehydrogenase chain B [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|238065043|sp|B1W4V9|NUOB2_STRGG RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName:
           Full=NADH dehydrogenase I subunit B 2; AltName:
           Full=NDH-1 subunit B 2
 gi|178465233|dbj|BAG19753.1| putative NADH dehydrogenase chain B [Streptomyces griseus subsp.
           griseus NBRC 13350]
          Length = 235

 Score =  170 bits (430), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 80/135 (59%), Positives = 103/135 (76%), Gaps = 1/135 (0%)

Query: 46  LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS-PRQSDVMIVAGTLTN 104
           ++ W R  SL    FGLACCA+E + ASM R+D  R G  P A  PRQ+D+MIV+GT+T+
Sbjct: 45  VLNWGRRYSLWVFNFGLACCAIEFIAASMARHDFIRLGVIPFAPGPRQADLMIVSGTVTD 104

Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164
           KMA A++R+Y+QMPEP+YVIS G+C+N GG Y  SYSV +G D+I+PVD+YVPGCPP  E
Sbjct: 105 KMAPAVKRLYEQMPEPKYVISFGACSNCGGPYWDSYSVTKGVDQIIPVDVYVPGCPPRPE 164

Query: 165 ALIYGILLLQKKIRR 179
           AL+ GIL LQ+KI R
Sbjct: 165 ALLQGILKLQEKIAR 179


>gi|150004312|ref|YP_001299056.1| NADH dehydrogenase subunit B [Bacteroides vulgatus ATCC 8482]
 gi|294776877|ref|ZP_06742340.1| NADH-quinone oxidoreductase, B subunit [Bacteroides vulgatus PC510]
 gi|319644247|ref|ZP_07998760.1| NADH dehydrogenase subunit I B [Bacteroides sp. 3_1_40A]
 gi|238065064|sp|A6L170|NUOB_BACV8 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|149932736|gb|ABR39434.1| NADH dehydrogenase I chain B [Bacteroides vulgatus ATCC 8482]
 gi|294449353|gb|EFG17890.1| NADH-quinone oxidoreductase, B subunit [Bacteroides vulgatus PC510]
 gi|317384238|gb|EFV65210.1| NADH dehydrogenase subunit I B [Bacteroides sp. 3_1_40A]
          Length = 198

 Score =  170 bits (430), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 74/141 (52%), Positives = 104/141 (73%), Gaps = 1/141 (0%)

Query: 39  LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APRASPRQSDVMI 97
           LV  +D L+ W R+ SL  +TF  +CC +E M     RYD  RFGF   RASPRQ+D+++
Sbjct: 37  LVGCLDDLINWGRSNSLWPLTFATSCCGIEFMAVGAARYDFARFGFEVARASPRQADMIM 96

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGT+T+KMA  L+R+YDQM +P+YVI++G CA  GG +  SY V+ G D+I+PVD+Y+P
Sbjct: 97  VAGTITHKMAPVLKRLYDQMADPKYVIAVGGCAISGGPFKKSYHVLNGVDKILPVDVYIP 156

Query: 158 GCPPTAEALIYGILLLQKKIR 178
           GCPP  EAL+YG++ LQ+K++
Sbjct: 157 GCPPRPEALLYGMIQLQRKVK 177


>gi|332826700|gb|EGJ99522.1| NADH-quinone oxidoreductase subunit B [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 197

 Score =  170 bits (430), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 78/151 (51%), Positives = 105/151 (69%), Gaps = 3/151 (1%)

Query: 31  SEITHKGF--LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APR 87
            E+   G   +V  +D L+ W R+ S+  + F  +CC +E M ++  RYDL RFG    R
Sbjct: 34  KELNENGVPVVVGKLDDLINWGRSNSVWPLAFATSCCGIEFMASAAARYDLARFGMEVTR 93

Query: 88  ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCD 147
            SPRQ+D M+VAGT+ +KMA  L+RVYDQM EP+YV++MGSCA  GG +  SY VV+G D
Sbjct: 94  NSPRQADTMVVAGTIVHKMAPLLKRVYDQMAEPKYVVAMGSCAISGGPFVDSYHVVKGID 153

Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
            I+PVD+YVPGCPP  EAL YG++ LQ+KI+
Sbjct: 154 EIMPVDVYVPGCPPRPEALFYGLMQLQRKIK 184


>gi|182436776|ref|YP_001824495.1| NADH dehydrogenase subunit B [Streptomyces griseus subsp. griseus
           NBRC 13350]
 gi|326777371|ref|ZP_08236636.1| NAD(P)H-quinone oxidoreductase subunit K [Streptomyces cf. griseus
           XylebKG-1]
 gi|238065022|sp|B1W518|NUOB1_STRGG RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName:
           Full=NADH dehydrogenase I subunit B 1; AltName:
           Full=NDH-1 subunit B 1
 gi|178465292|dbj|BAG19812.1| putative NADH dehydrogenase chain B [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|326657704|gb|EGE42550.1| NAD(P)H-quinone oxidoreductase subunit K [Streptomyces cf. griseus
           XylebKG-1]
          Length = 184

 Score =  170 bits (430), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 82/149 (55%), Positives = 106/149 (71%), Gaps = 2/149 (1%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RAS 89
            E    GF++T+V+Q   W R  S+   TFGLACCA+EMM     RYDL RFG    R S
Sbjct: 4   EEKLPSGFVLTTVEQAAGWVRKSSVFPATFGLACCAIEMMTTGAGRYDLARFGMEVFRGS 63

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQ+D+MIVAG ++ KMA  LR+VYDQMP P++VISMG CA+ GG ++ +Y++V+G D I
Sbjct: 64  PRQADLMIVAGRVSQKMAPVLRQVYDQMPNPKWVISMGVCASSGGMFN-NYAIVQGVDHI 122

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           VPVDIY+PGCPP  E L+  IL L +KI+
Sbjct: 123 VPVDIYLPGCPPRPEMLLDAILKLHQKIQ 151


>gi|159039974|ref|YP_001539227.1| NADH-quinone oxidoreductase, B subunit [Salinispora arenicola
           CNS-205]
 gi|238065040|sp|A8M621|NUOB2_SALAI RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName:
           Full=NADH dehydrogenase I subunit B 2; AltName:
           Full=NDH-1 subunit B 2
 gi|157918809|gb|ABW00237.1| NADH-quinone oxidoreductase, B subunit [Salinispora arenicola
           CNS-205]
          Length = 226

 Score =  170 bits (430), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 80/142 (56%), Positives = 109/142 (76%), Gaps = 2/142 (1%)

Query: 37  GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95
           G L+TSV++LV W+R  S+   TFGLACCA+EMM A  P YD+ R+G    RASPRQ+D+
Sbjct: 10  GVLLTSVEKLVNWSRKSSVWGATFGLACCAIEMMAAGGPHYDMGRWGMEVFRASPRQADL 69

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
           MIVAG ++ KMA  LR++YDQM EPR+V+SMG CA+ GG ++ +Y++V+G D +VPVD+Y
Sbjct: 70  MIVAGRVSQKMAPVLRQIYDQMAEPRWVLSMGVCASSGGMFN-NYAIVQGVDHVVPVDMY 128

Query: 156 VPGCPPTAEALIYGILLLQKKI 177
           +PGCPP  E LI  +L L++KI
Sbjct: 129 LPGCPPRPEMLIDAVLKLREKI 150


>gi|328884356|emb|CCA57595.1| NADH-ubiquinone oxidoreductase chain B [Streptomyces venezuelae
           ATCC 10712]
          Length = 193

 Score =  170 bits (430), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 80/135 (59%), Positives = 103/135 (76%), Gaps = 1/135 (0%)

Query: 46  LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA-SPRQSDVMIVAGTLTN 104
           ++ W R  SL    FGLACCA+E + ASM R+D  R G  P A  PRQ+D+MIV+GT+T+
Sbjct: 29  VLNWGRRYSLWVFNFGLACCAIEFIAASMARHDFIRLGVIPFAPGPRQADLMIVSGTVTD 88

Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164
           KMA A++R+Y+QMPEP+YVIS G+C+N GG Y  SYSV +G D+I+PVD+YVPGCPP  E
Sbjct: 89  KMAPAVKRLYEQMPEPKYVISFGACSNCGGPYWDSYSVTKGVDQIIPVDVYVPGCPPRPE 148

Query: 165 ALIYGILLLQKKIRR 179
           AL+ GIL LQ+KI R
Sbjct: 149 ALLQGILKLQEKIAR 163


>gi|297201676|ref|ZP_06919073.1| NADH dehydrogenase subunit NuoB2 [Streptomyces sviceus ATCC 29083]
 gi|297147941|gb|EDY54985.2| NADH dehydrogenase subunit NuoB2 [Streptomyces sviceus ATCC 29083]
          Length = 234

 Score =  170 bits (430), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 79/135 (58%), Positives = 103/135 (76%), Gaps = 1/135 (0%)

Query: 46  LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA-SPRQSDVMIVAGTLTN 104
           ++ W R  SL    FGLACCA+E + ASM R+D  R G  P A  PRQ+D+M+V+GT+T+
Sbjct: 45  ILNWGRRYSLWVFNFGLACCAIEFIAASMARHDFIRLGVIPFAPGPRQADLMVVSGTVTD 104

Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164
           KMA A++R+Y+QMPEP+YVIS G+C+N GG Y  SYSV +G D+I+PVD+YVPGCPP  E
Sbjct: 105 KMAPAVKRLYEQMPEPKYVISFGACSNCGGPYWDSYSVTKGVDQIIPVDVYVPGCPPRPE 164

Query: 165 ALIYGILLLQKKIRR 179
           AL+ GIL LQ+KI R
Sbjct: 165 ALLQGILKLQEKIAR 179


>gi|193215671|ref|YP_001996870.1| NADH-quinone oxidoreductase subunit B [Chloroherpeton thalassium
           ATCC 35110]
 gi|238065009|sp|B3QUS2|NUOB1_CHLT3 RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName:
           Full=NADH dehydrogenase I subunit B 1; AltName:
           Full=NDH-1 subunit B 1
 gi|193089148|gb|ACF14423.1| NADH-quinone oxidoreductase, B subunit [Chloroherpeton thalassium
           ATCC 35110]
          Length = 186

 Score =  170 bits (430), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 75/144 (52%), Positives = 110/144 (76%), Gaps = 2/144 (1%)

Query: 37  GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95
           GFL T++D +  W R  S+  M  GL+CCA+EMM  + PRYD+ RFG    R SPRQSD+
Sbjct: 10  GFLTTTLDAITNWGRANSIWPMPMGLSCCAIEMMAMAGPRYDIARFGAEVFRFSPRQSDL 69

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
           MIVAGT+T KMA+ +++++DQMPEP++ I+MG+C++ GG +  SY VV+G D+ +PVD+Y
Sbjct: 70  MIVAGTVTYKMATVVKKIWDQMPEPKWCIAMGACSSSGGMFR-SYPVVQGIDQFLPVDVY 128

Query: 156 VPGCPPTAEALIYGILLLQKKIRR 179
           VPGCPP  +A+I+ ++ +Q+KI+R
Sbjct: 129 VPGCPPRPDAVIHAVMEIQEKIKR 152


>gi|271962234|ref|YP_003336430.1| NADH dehydrogenase (quinone) [Streptosporangium roseum DSM 43021]
 gi|270505409|gb|ACZ83687.1| NADH dehydrogenase (quinone) [Streptosporangium roseum DSM 43021]
          Length = 173

 Score =  170 bits (430), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 77/133 (57%), Positives = 104/133 (78%), Gaps = 1/133 (0%)

Query: 46  LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS-PRQSDVMIVAGTLTN 104
           ++ W R  SL    FGLACCA+E +  +M R+D  RFG  P A+ PRQ+D+MIV+GT+T+
Sbjct: 23  ILNWGRRYSLWAFNFGLACCAIEFIATTMSRHDFIRFGVIPFANGPRQADLMIVSGTVTD 82

Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164
           KMA A++R+Y+QMPEP+YVIS G+C+N GG Y  SY V +G D+I+PVD+YVPGCPP  E
Sbjct: 83  KMAPAVKRLYEQMPEPKYVISFGACSNSGGPYWDSYCVTKGVDQIIPVDVYVPGCPPRPE 142

Query: 165 ALIYGILLLQKKI 177
           AL++GI+LLQ+KI
Sbjct: 143 ALLHGIMLLQEKI 155


>gi|254382442|ref|ZP_04997801.1| NuoB [Streptomyces sp. Mg1]
 gi|194341346|gb|EDX22312.1| NuoB [Streptomyces sp. Mg1]
          Length = 184

 Score =  170 bits (430), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 83/149 (55%), Positives = 105/149 (70%), Gaps = 2/149 (1%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RAS 89
            E    GFL+T+V+Q   W R  S+   TFGLACCA+EMM     RYDL RFG    R S
Sbjct: 4   EEKLPSGFLLTTVEQAAGWVRKSSVFPATFGLACCAIEMMTTGAGRYDLARFGMEVFRGS 63

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQ+D+MIVAG ++ KMA  LR+VYDQMP P++VISMG CA+ GG ++ +Y++V+G D I
Sbjct: 64  PRQADLMIVAGRVSQKMAPVLRQVYDQMPAPKWVISMGVCASSGGMFN-NYAIVQGVDHI 122

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           VPVDIY+PGCPP  E L+  IL L  KI+
Sbjct: 123 VPVDIYLPGCPPRPEMLMDAILKLHHKIQ 151


>gi|158317835|ref|YP_001510343.1| NADH dehydrogenase subunit B [Frankia sp. EAN1pec]
 gi|238065147|sp|A8LCA0|NUOB_FRASN RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|158113240|gb|ABW15437.1| NADH-quinone oxidoreductase, B subunit [Frankia sp. EAN1pec]
          Length = 264

 Score =  170 bits (430), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 80/142 (56%), Positives = 107/142 (75%), Gaps = 2/142 (1%)

Query: 37  GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95
           G L+T+V++L  W+R  SL   TFGLACCA+EMM     RYDL RFG    RASPRQ+D+
Sbjct: 10  GVLLTTVEKLANWSRRSSLWPATFGLACCAIEMMSTGAGRYDLSRFGMEVFRASPRQADL 69

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
           MIVAG ++ KMA  LR++YDQMPEP++V+SMG CA+ GG ++ +Y++V+G D IVPVD+Y
Sbjct: 70  MIVAGRVSQKMAPVLRQIYDQMPEPKWVLSMGVCASSGGMFN-NYAIVQGVDHIVPVDMY 128

Query: 156 VPGCPPTAEALIYGILLLQKKI 177
           +PGCPP  E L+  I+ L +KI
Sbjct: 129 LPGCPPRPEMLMDAIVKLHEKI 150


>gi|294814429|ref|ZP_06773072.1| NADH dehydrogenase I chain B [Streptomyces clavuligerus ATCC 27064]
 gi|326442819|ref|ZP_08217553.1| putative NADH dehydrogenase chain B [Streptomyces clavuligerus ATCC
           27064]
 gi|294327028|gb|EFG08671.1| NADH dehydrogenase I chain B [Streptomyces clavuligerus ATCC 27064]
          Length = 239

 Score =  170 bits (430), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 80/135 (59%), Positives = 103/135 (76%), Gaps = 1/135 (0%)

Query: 46  LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA-SPRQSDVMIVAGTLTN 104
           ++ W R  SL    FGLACCA+E + ASM R+D  R G  P A  PRQ+D+MIV+GT+T+
Sbjct: 56  VLNWGRRYSLWVFNFGLACCAIEFIAASMARHDFIRLGVIPFAPGPRQADLMIVSGTVTD 115

Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164
           KMA A++R+Y+QMPEP+YVIS G+C+N GG Y  SYSV +G D+I+PVD+YVPGCPP  E
Sbjct: 116 KMAPAVKRLYEQMPEPKYVISFGACSNCGGPYWDSYSVTKGVDQIIPVDVYVPGCPPRPE 175

Query: 165 ALIYGILLLQKKIRR 179
           AL+ GIL LQ+KI R
Sbjct: 176 ALLQGILKLQEKIAR 190


>gi|239943528|ref|ZP_04695465.1| putative NADH dehydrogenase chain B [Streptomyces roseosporus NRRL
           15998]
 gi|239989982|ref|ZP_04710646.1| putative NADH dehydrogenase chain B [Streptomyces roseosporus NRRL
           11379]
          Length = 226

 Score =  170 bits (430), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 80/135 (59%), Positives = 103/135 (76%), Gaps = 1/135 (0%)

Query: 46  LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS-PRQSDVMIVAGTLTN 104
           ++ W R  SL    FGLACCA+E + ASM R+D  R G  P A  PRQ+D+MIV+GT+T+
Sbjct: 47  VLNWGRRYSLWVFNFGLACCAIEFIAASMARHDFIRLGVIPFAPGPRQADLMIVSGTVTD 106

Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164
           KMA A++R+Y+QMPEP+YVIS G+C+N GG Y  SYSV +G D+I+PVD+YVPGCPP  E
Sbjct: 107 KMAPAVKRLYEQMPEPKYVISFGACSNCGGPYWDSYSVTKGVDQIIPVDVYVPGCPPRPE 166

Query: 165 ALIYGILLLQKKIRR 179
           AL+ GIL LQ+KI R
Sbjct: 167 ALLQGILKLQEKIAR 181


>gi|254391175|ref|ZP_05006382.1| NADH dehydrogenase I chain B [Streptomyces clavuligerus ATCC 27064]
 gi|197704869|gb|EDY50681.1| NADH dehydrogenase I chain B [Streptomyces clavuligerus ATCC 27064]
          Length = 237

 Score =  170 bits (430), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 80/135 (59%), Positives = 103/135 (76%), Gaps = 1/135 (0%)

Query: 46  LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA-SPRQSDVMIVAGTLTN 104
           ++ W R  SL    FGLACCA+E + ASM R+D  R G  P A  PRQ+D+MIV+GT+T+
Sbjct: 54  VLNWGRRYSLWVFNFGLACCAIEFIAASMARHDFIRLGVIPFAPGPRQADLMIVSGTVTD 113

Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164
           KMA A++R+Y+QMPEP+YVIS G+C+N GG Y  SYSV +G D+I+PVD+YVPGCPP  E
Sbjct: 114 KMAPAVKRLYEQMPEPKYVISFGACSNCGGPYWDSYSVTKGVDQIIPVDVYVPGCPPRPE 173

Query: 165 ALIYGILLLQKKIRR 179
           AL+ GIL LQ+KI R
Sbjct: 174 ALLQGILKLQEKIAR 188


>gi|260885204|ref|ZP_05734514.2| NADH dehydrogenase I subunit B [Prevotella tannerae ATCC 51259]
 gi|260853160|gb|EEX73029.1| NADH dehydrogenase I subunit B [Prevotella tannerae ATCC 51259]
          Length = 214

 Score =  169 bits (429), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 74/161 (45%), Positives = 111/161 (68%), Gaps = 3/161 (1%)

Query: 21  KVDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78
           K +  + ++ +E+   G   +V  +D L+ W R+ SL  +TF  +CC +E M     RYD
Sbjct: 19  KDNETYEKLVAELNANGANVIVKPLDDLINWGRSNSLWPLTFATSCCGIEFMAVCAARYD 78

Query: 79  LERFGF-APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137
           + RFGF   R SPRQ+DV++V+GT+TNKMA  L+R+YDQM +P+YV+++G CA  GG + 
Sbjct: 79  IARFGFEVTRNSPRQADVILVSGTITNKMAPVLKRLYDQMADPKYVVAIGGCATTGGPFV 138

Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
            SY VV+G D I+PV++YVPGCPP  EA +YG++ LQ+ ++
Sbjct: 139 KSYHVVKGVDEIIPVNVYVPGCPPRPEAFLYGMMQLQRIVK 179


>gi|322417697|ref|YP_004196920.1| NADH dehydrogenase I subunit D [Geobacter sp. M18]
 gi|320124084|gb|ADW11644.1| NADH dehydrogenase I, D subunit [Geobacter sp. M18]
          Length = 794

 Score =  169 bits (429), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 81/153 (52%), Positives = 110/153 (71%), Gaps = 2/153 (1%)

Query: 27  SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP 86
           S    E   +  L+TS+D L+ W R  SL  M FGL+CC VEMM +   RYD+ RFG   
Sbjct: 2   SERDDEKIPENVLLTSLDDLINWGRANSLWPMFFGLSCCFVEMMTSFTSRYDVSRFGAEV 61

Query: 87  -RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRG 145
            R +PR+SD+M++AGT+  KMA ++ R+Y+QM EP++VISMGSCAN GG Y   YSVV+G
Sbjct: 62  LRGTPRESDLMVIAGTVFKKMAPSILRLYEQMAEPKWVISMGSCANSGGMYDV-YSVVQG 120

Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
            ++I+PVD+Y+PGCPP  E+ + G++LLQKKIR
Sbjct: 121 VNQILPVDLYIPGCPPRPESFLEGLMLLQKKIR 153


>gi|302543443|ref|ZP_07295785.1| NADH dehydrogenase I, B subunit [Streptomyces hygroscopicus ATCC
           53653]
 gi|302461061|gb|EFL24154.1| NADH dehydrogenase I, B subunit [Streptomyces himastatinicus ATCC
           53653]
          Length = 184

 Score =  169 bits (429), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 84/150 (56%), Positives = 106/150 (70%), Gaps = 2/150 (1%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RAS 89
            E    GFL+T+V+Q    AR  S+   TFGLACCA+EMM     RYDL RFG    R S
Sbjct: 4   EEKLPSGFLLTTVEQAAGLARKSSVFPATFGLACCAIEMMTTGAGRYDLARFGMEVFRGS 63

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQ+D+MIVAG ++ KMA  LR+VYDQMP P++VISMG CA+ GG ++ +Y++V+G D I
Sbjct: 64  PRQADLMIVAGRVSQKMAPVLRQVYDQMPNPKWVISMGVCASTGGMFN-NYAIVQGVDHI 122

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           VPVDIY+PGCPP  E L+  IL L +KIR 
Sbjct: 123 VPVDIYLPGCPPRPEMLMDAILKLHEKIRE 152


>gi|282860720|ref|ZP_06269786.1| NADH-quinone oxidoreductase, B subunit [Streptomyces sp. ACTE]
 gi|282564456|gb|EFB69992.1| NADH-quinone oxidoreductase, B subunit [Streptomyces sp. ACTE]
          Length = 184

 Score =  169 bits (429), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 82/149 (55%), Positives = 106/149 (71%), Gaps = 2/149 (1%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RAS 89
            E    GF++T+V+Q   W R  S+   TFGLACCA+EMM     RYDL RFG    R S
Sbjct: 4   EEKLPSGFVLTTVEQAAGWVRKSSVFPATFGLACCAIEMMTTGAGRYDLARFGMEVFRGS 63

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQ+D+MIVAG ++ KMA  LR+VYDQMP P++VISMG CA+ GG ++ +Y++V+G D I
Sbjct: 64  PRQADLMIVAGRVSQKMAPVLRQVYDQMPSPKWVISMGVCASSGGMFN-NYAIVQGVDHI 122

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           VPVDIY+PGCPP  E L+  IL L +KI+
Sbjct: 123 VPVDIYLPGCPPRPEMLMDAILKLHQKIQ 151


>gi|320160240|ref|YP_004173464.1| NADH-quinone oxidoreductase subunit B [Anaerolinea thermophila
           UNI-1]
 gi|319994093|dbj|BAJ62864.1| NADH-quinone oxidoreductase chain B [Anaerolinea thermophila UNI-1]
          Length = 160

 Score =  169 bits (429), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 79/157 (50%), Positives = 112/157 (71%), Gaps = 2/157 (1%)

Query: 29  ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-R 87
           +  ++ + G +   +++ V WART ++  M FGLACCA+EMM A    YD+ RFG    R
Sbjct: 3   VEQKLGNMGVVTLKLEEAVNWARTNAMWPMLFGLACCAIEMMAAQASNYDMSRFGMELMR 62

Query: 88  ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCD 147
           ASPRQSD+MIVAG ++ KMA  LR++YDQMP P++VI+MG CA+ GG ++ +Y++++G D
Sbjct: 63  ASPRQSDLMIVAGRVSRKMAPVLRQLYDQMPYPKWVIAMGDCASCGGVFN-NYAILQGVD 121

Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
            IVPVD+YV GCPP  E LI+G+L L  K+R+   VK
Sbjct: 122 EIVPVDVYVAGCPPRPEGLIHGVLTLHDKVRKEKLVK 158


>gi|320009166|gb|ADW04016.1| NADH-quinone oxidoreductase, B subunit [Streptomyces flavogriseus
           ATCC 33331]
          Length = 205

 Score =  169 bits (429), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 79/135 (58%), Positives = 103/135 (76%), Gaps = 1/135 (0%)

Query: 46  LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS-PRQSDVMIVAGTLTN 104
           ++ W R  SL    FGLACCA+E + ASM R+D  R G  P A  PRQ+D+M+V+GT+T+
Sbjct: 35  VLNWGRRYSLWVFNFGLACCAIEFIAASMARHDFIRLGVIPFAPGPRQADLMVVSGTVTD 94

Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164
           KMA A++R+Y+QMPEP+YVIS G+C+N GG Y  SYSV +G D+I+PVD+YVPGCPP  E
Sbjct: 95  KMAPAVKRLYEQMPEPKYVISFGACSNCGGPYWDSYSVTKGVDQIIPVDVYVPGCPPRPE 154

Query: 165 ALIYGILLLQKKIRR 179
           AL+ GIL LQ+KI R
Sbjct: 155 ALLQGILKLQEKIAR 169


>gi|290958206|ref|YP_003489388.1| NADH dehydrogenase subunit NuoB2 [Streptomyces scabiei 87.22]
 gi|260647732|emb|CBG70837.1| NADH dehydrogenase subunit NuoB2 [Streptomyces scabiei 87.22]
          Length = 226

 Score =  169 bits (429), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 79/135 (58%), Positives = 103/135 (76%), Gaps = 1/135 (0%)

Query: 46  LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS-PRQSDVMIVAGTLTN 104
           ++ W R  SL    FGLACCA+E + ASM R+D  R G  P A  PRQ+D+M+V+GT+T+
Sbjct: 41  ILNWGRRYSLWVFNFGLACCAIEFIAASMARHDFIRLGVIPFAPGPRQADLMVVSGTVTD 100

Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164
           KMA A++R+Y+QMPEP+YVIS G+C+N GG Y  SYSV +G D+I+PVD+YVPGCPP  E
Sbjct: 101 KMAPAVKRLYEQMPEPKYVISFGACSNCGGPYWDSYSVTKGVDQIIPVDVYVPGCPPRPE 160

Query: 165 ALIYGILLLQKKIRR 179
           AL+ GIL LQ+KI R
Sbjct: 161 ALLQGILKLQEKIAR 175


>gi|326777317|ref|ZP_08236582.1| NAD(P)H-quinone oxidoreductase subunit K [Streptomyces cf. griseus
           XylebKG-1]
 gi|326657650|gb|EGE42496.1| NAD(P)H-quinone oxidoreductase subunit K [Streptomyces cf. griseus
           XylebKG-1]
          Length = 230

 Score =  169 bits (429), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 80/135 (59%), Positives = 103/135 (76%), Gaps = 1/135 (0%)

Query: 46  LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS-PRQSDVMIVAGTLTN 104
           ++ W R  SL    FGLACCA+E + ASM R+D  R G  P A  PRQ+D+MIV+GT+T+
Sbjct: 45  VLNWGRRYSLWVFNFGLACCAIEFIAASMARHDFIRLGVIPFAPGPRQADLMIVSGTVTD 104

Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164
           KMA A++R+Y+QMPEP+YVIS G+C+N GG Y  SYSV +G D+I+PVD+YVPGCPP  E
Sbjct: 105 KMAPAVKRLYEQMPEPKYVISFGACSNCGGPYWDSYSVTKGVDQIIPVDVYVPGCPPRPE 164

Query: 165 ALIYGILLLQKKIRR 179
           AL+ GIL LQ+KI R
Sbjct: 165 ALLQGILKLQEKIAR 179


>gi|281419772|ref|ZP_06250771.1| NADH-quinone oxidoreductase chain B [Prevotella copri DSM 18205]
 gi|281406148|gb|EFB36828.1| NADH-quinone oxidoreductase chain B [Prevotella copri DSM 18205]
          Length = 241

 Score =  169 bits (429), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 74/161 (45%), Positives = 109/161 (67%), Gaps = 3/161 (1%)

Query: 21  KVDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78
           K +    +I+ E+   G   +V S+D  + W R+ SL  +TFG +CC +E M     RYD
Sbjct: 18  KDNDTLEKIAQELNEGGANVVVGSLDAAINWGRSNSLWSLTFGTSCCGIEFMAVGCARYD 77

Query: 79  LERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137
             RFGF   R SPRQ+D+++ AGT+TNKMA   +R+YD+M EP+YV+++G C   GG + 
Sbjct: 78  FSRFGFEVTRNSPRQADLIMCAGTITNKMAPVFKRLYDEMAEPKYVVAVGGCTISGGPFK 137

Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
            SY+VVRG   +VPVD+Y+PGCPP  EA++YG++ LQ+K++
Sbjct: 138 KSYNVVRGISELVPVDVYIPGCPPRPEAILYGMMQLQRKVK 178


>gi|302559060|ref|ZP_07311402.1| NADH dehydrogenase I, 20 kDa subunit [Streptomyces griseoflavus
           Tu4000]
 gi|302476678|gb|EFL39771.1| NADH dehydrogenase I, 20 kDa subunit [Streptomyces griseoflavus
           Tu4000]
          Length = 205

 Score =  169 bits (429), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 85/175 (48%), Positives = 115/175 (65%), Gaps = 10/175 (5%)

Query: 6   VNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACC 65
           VN   ++G       K     +R++ E          +  ++ W R  SL    FGLACC
Sbjct: 3   VNPAAVAGPVPLPEPKRLGALARLAPE---------PMKVVLNWGRRYSLWVFNFGLACC 53

Query: 66  AVEMMQASMPRYDLERFGFAPRA-SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           A+E + ASM R+D  R G  P A  PRQ+D+M+V+GT+T+KMA A++R+Y+QMPEP+YVI
Sbjct: 54  AIEFIAASMARHDFIRLGVIPFAPGPRQADLMVVSGTVTDKMAPAVKRLYEQMPEPKYVI 113

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           S G+C+N GG Y  SYSV +G D+I+PVD+YVPGCPP  EAL+ GIL LQ+KI R
Sbjct: 114 SFGACSNCGGPYWDSYSVTKGVDQIIPVDVYVPGCPPRPEALLQGILKLQEKIAR 168


>gi|302553480|ref|ZP_07305822.1| NADH dehydrogenase subunit I B [Streptomyces viridochromogenes DSM
           40736]
 gi|302471098|gb|EFL34191.1| NADH dehydrogenase subunit I B [Streptomyces viridochromogenes DSM
           40736]
          Length = 206

 Score =  169 bits (429), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 79/135 (58%), Positives = 103/135 (76%), Gaps = 1/135 (0%)

Query: 46  LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS-PRQSDVMIVAGTLTN 104
           ++ W R  SL    FGLACCA+E + ASM R+D  R G  P A  PRQ+D+M+V+GT+T+
Sbjct: 30  ILNWGRRYSLWVFNFGLACCAIEFIAASMARHDFIRLGVIPFAPGPRQADLMVVSGTVTD 89

Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164
           KMA A++R+Y+QMPEP+YVIS G+C+N GG Y  SYSV +G D+I+PVD+YVPGCPP  E
Sbjct: 90  KMAPAVKRLYEQMPEPKYVISFGACSNCGGPYWDSYSVTKGVDQIIPVDVYVPGCPPRPE 149

Query: 165 ALIYGILLLQKKIRR 179
           AL+ GIL LQ+KI R
Sbjct: 150 ALLQGILKLQEKIAR 164


>gi|288917184|ref|ZP_06411553.1| NADH-quinone oxidoreductase, B subunit [Frankia sp. EUN1f]
 gi|288351375|gb|EFC85583.1| NADH-quinone oxidoreductase, B subunit [Frankia sp. EUN1f]
          Length = 264

 Score =  169 bits (428), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 80/142 (56%), Positives = 106/142 (74%), Gaps = 2/142 (1%)

Query: 37  GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95
           G L+T+V+ L  W+R  SL   TFGLACCA+EMM     RYDL RFG    RASPRQ+D+
Sbjct: 10  GVLLTTVEMLANWSRRSSLWPATFGLACCAIEMMSTGAGRYDLSRFGMEVFRASPRQADL 69

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
           MIVAG ++ KMA  LR++YDQMPEP++V+SMG CA+ GG ++ +Y++V+G D IVPVD+Y
Sbjct: 70  MIVAGRVSQKMAPVLRQIYDQMPEPKWVLSMGVCASSGGMFN-NYAIVQGVDHIVPVDMY 128

Query: 156 VPGCPPTAEALIYGILLLQKKI 177
           +PGCPP  E L+  I+ L +KI
Sbjct: 129 LPGCPPRPEMLMDAIIKLHEKI 150


>gi|223937077|ref|ZP_03628985.1| NADH-quinone oxidoreductase, B subunit [bacterium Ellin514]
 gi|223894358|gb|EEF60811.1| NADH-quinone oxidoreductase, B subunit [bacterium Ellin514]
          Length = 169

 Score =  169 bits (428), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 81/142 (57%), Positives = 106/142 (74%), Gaps = 2/142 (1%)

Query: 39  LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMI 97
           +VT VD  + W R  SL  M  GLACCA+E+M A   RYD+ RFG    R SPRQSDVM+
Sbjct: 18  IVTRVDAALNWFRKNSLWPMPMGLACCAIELMAAGASRYDIARFGSEVMRFSPRQSDVMV 77

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGT+T KMA A++R+YDQMPEP++VI+MG+CA+ GG Y  SY+V++G DRI+PVD+YV 
Sbjct: 78  VAGTVTYKMAMAVKRIYDQMPEPKWVIAMGACASTGGMYR-SYAVLQGVDRIIPVDVYVA 136

Query: 158 GCPPTAEALIYGILLLQKKIRR 179
           GCPP  EAL+  ++ LQ K+ +
Sbjct: 137 GCPPRPEALLDALIKLQNKVSK 158


>gi|225850946|ref|YP_002731180.1| NADH dehydrogenase subunit B [Persephonella marina EX-H1]
 gi|225646636|gb|ACO04822.1| NADH-quinone oxidoreductase chain b (nadh dehydrogenasei, chain b)
           (ndh-1, chain b) [Persephonella marina EX-H1]
          Length = 181

 Score =  169 bits (428), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 73/140 (52%), Positives = 108/140 (77%), Gaps = 1/140 (0%)

Query: 35  HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSD 94
           + G ++T+V+++++W R  SL   + GLACCA+EMM  +  R+D +R G   R SPRQSD
Sbjct: 6   NNGIILTTVEEVLSWGRRNSLWPASVGLACCAIEMMHTAASRFDTDRLGIIFRGSPRQSD 65

Query: 95  VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154
           V+IVAGT+ NK+A  L+ +YDQMP+P++VI+MG C++ GG +  +Y+ ++G DRI+PVD+
Sbjct: 66  VLIVAGTVVNKVAPMLKLIYDQMPDPKWVIAMGGCSSAGGPFP-TYATLQGVDRIIPVDV 124

Query: 155 YVPGCPPTAEALIYGILLLQ 174
           YVPGCPPT +AL++GIL LQ
Sbjct: 125 YVPGCPPTPQALLWGILELQ 144


>gi|84494897|ref|ZP_00994016.1| putative NADH dehydrogenase I chain B [Janibacter sp. HTCC2649]
 gi|84384390|gb|EAQ00270.1| putative NADH dehydrogenase I chain B [Janibacter sp. HTCC2649]
          Length = 212

 Score =  169 bits (428), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 77/133 (57%), Positives = 103/133 (77%), Gaps = 1/133 (0%)

Query: 46  LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA-SPRQSDVMIVAGTLTN 104
           ++ W R  SL    FGLACCA+E + ASM R+D  R G  P A  PRQ+D+M+V+GT+T+
Sbjct: 28  VLNWGRRYSLWVFNFGLACCAIEFIAASMGRHDFIRLGVIPFAPGPRQADLMVVSGTVTD 87

Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164
           KMA A+RR+YDQMPEP+YVIS G+C+N GG Y  SYSV +G D+++PVD+YVPGCPP  E
Sbjct: 88  KMAPAIRRLYDQMPEPKYVISFGACSNSGGPYWDSYSVTKGVDQLIPVDVYVPGCPPRPE 147

Query: 165 ALIYGILLLQKKI 177
           AL++GI+ LQ++I
Sbjct: 148 ALLHGIIKLQEQI 160


>gi|145596575|ref|YP_001160872.1| NADH-quinone oxidoreductase, B subunit [Salinispora tropica
           CNB-440]
 gi|238065041|sp|A4XC37|NUOB2_SALTO RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName:
           Full=NADH dehydrogenase I subunit B 2; AltName:
           Full=NDH-1 subunit B 2
 gi|145305912|gb|ABP56494.1| NADH-quinone oxidoreductase, B subunit [Salinispora tropica
           CNB-440]
          Length = 226

 Score =  169 bits (428), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 80/142 (56%), Positives = 108/142 (76%), Gaps = 2/142 (1%)

Query: 37  GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95
           G L+TSV++ V W+R  S+   TFGLACCA+EMM A  P YD+ R+G    RASPRQ+D+
Sbjct: 10  GVLLTSVEKFVNWSRKSSVWGATFGLACCAIEMMAAGGPHYDMGRWGMEVFRASPRQADL 69

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
           MIVAG ++ KMA  LR++YDQM EPR+V+SMG CA+ GG ++ +Y++V+G D +VPVD+Y
Sbjct: 70  MIVAGRVSQKMAPVLRQIYDQMAEPRWVLSMGVCASSGGMFN-NYAIVQGVDHVVPVDMY 128

Query: 156 VPGCPPTAEALIYGILLLQKKI 177
           +PGCPP  E LI  IL L++KI
Sbjct: 129 LPGCPPRPEMLIDAILKLREKI 150


>gi|255691139|ref|ZP_05414814.1| NADH dehydrogenase I, B subunit [Bacteroides finegoldii DSM 17565]
 gi|260623232|gb|EEX46103.1| NADH dehydrogenase I, B subunit [Bacteroides finegoldii DSM 17565]
          Length = 200

 Score =  169 bits (428), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 77/162 (47%), Positives = 110/162 (67%), Gaps = 6/162 (3%)

Query: 18  SLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRY 77
           SLEK+  + +   + I      +  +D  + W R+ SL  +TF  +CC +E M     RY
Sbjct: 22  SLEKLVKELNAGGANIA-----LGVLDDFINWGRSNSLWPLTFATSCCGIEFMALGAARY 76

Query: 78  DLERFGF-APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY 136
           D+ RFGF   RASPRQ+D+++V GT+TNKMA  L+R+YDQMP+P+YVI++G CA  GG +
Sbjct: 77  DMARFGFEVARASPRQADMIMVCGTITNKMAPVLKRLYDQMPDPKYVIAVGGCAVSGGPF 136

Query: 137 HYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
             SY VV G D+I+PVD+Y+PGCPP  EA  YG++ LQ+K++
Sbjct: 137 KKSYHVVNGVDKILPVDVYIPGCPPRPEAFYYGMMQLQRKVK 178


>gi|29349474|ref|NP_812977.1| NADH dehydrogenase subunit B [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|81586646|sp|Q8A0F5|NUOB_BACTN RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|29341383|gb|AAO79171.1| NADH dehydrogenase I, chain B [Bacteroides thetaiotaomicron
           VPI-5482]
          Length = 197

 Score =  169 bits (428), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 76/162 (46%), Positives = 111/162 (68%), Gaps = 6/162 (3%)

Query: 18  SLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRY 77
           SLEK+  + +   + +      +  +D LV W R+ SL  +TF  +CC +E M     RY
Sbjct: 22  SLEKLVKELNTGGANV-----FLGVLDDLVNWGRSNSLWPLTFATSCCGIEFMALGAARY 76

Query: 78  DLERFGF-APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY 136
           D+ RFGF   RASPRQ+D+++V GT+TNKMA  L+R+YDQMP+P+YV+++G CA  GG +
Sbjct: 77  DMARFGFEVARASPRQADMIMVCGTITNKMAPVLKRLYDQMPDPKYVVAVGGCAVSGGPF 136

Query: 137 HYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
             SY V+ G D+I+PVD+Y+PGCPP  EA  YG++ LQ+K++
Sbjct: 137 KKSYHVLNGVDKILPVDVYIPGCPPRPEAFYYGMMQLQRKVK 178


>gi|94969279|ref|YP_591327.1| NADH dehydrogenase subunit B [Candidatus Koribacter versatilis
           Ellin345]
 gi|238065004|sp|Q1IPE7|NUOB1_ACIBL RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName:
           Full=NADH dehydrogenase I subunit B 1; AltName:
           Full=NDH-1 subunit B 1
 gi|94551329|gb|ABF41253.1| NADH dehydrogenase subunit B [Candidatus Koribacter versatilis
           Ellin345]
          Length = 213

 Score =  169 bits (428), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 79/148 (53%), Positives = 108/148 (72%), Gaps = 2/148 (1%)

Query: 32  EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASP 90
           E   +G ++T++D  V W R  S+  MTFGLACCA+EMM     R+D+ RFG    R SP
Sbjct: 50  EQPEEGIVLTTLDNAVNWIRKNSIWPMTFGLACCAIEMMSMGASRFDIARFGAEVFRPSP 109

Query: 91  RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150
           RQSD+MI+AG ++ KMA  +R +Y QMPEP++VISMG+CA  GG ++ +Y++V+G ++ +
Sbjct: 110 RQSDLMIIAGRVSQKMAPVIRHLYLQMPEPKWVISMGACATSGGVFN-NYALVQGVNQYI 168

Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIR 178
           PVDIYVPGCPP  E LIY I LLQ+KI+
Sbjct: 169 PVDIYVPGCPPRPEQLIYAITLLQEKIQ 196


>gi|298384973|ref|ZP_06994532.1| proton-translocating NADH-quinone oxidoreductase, B subunit
           [Bacteroides sp. 1_1_14]
 gi|298262117|gb|EFI04982.1| proton-translocating NADH-quinone oxidoreductase, B subunit
           [Bacteroides sp. 1_1_14]
          Length = 197

 Score =  169 bits (428), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 76/162 (46%), Positives = 111/162 (68%), Gaps = 6/162 (3%)

Query: 18  SLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRY 77
           SLEK+  + +   + +      +  +D LV W R+ SL  +TF  +CC +E M     RY
Sbjct: 22  SLEKLVKELNAGGANV-----FLGVLDDLVNWGRSNSLWPLTFATSCCGIEFMALGAARY 76

Query: 78  DLERFGF-APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY 136
           D+ RFGF   RASPRQ+D+++V GT+TNKMA  L+R+YDQMP+P+YV+++G CA  GG +
Sbjct: 77  DMARFGFEVARASPRQADMIMVCGTITNKMAPVLKRLYDQMPDPKYVVAVGGCAVSGGPF 136

Query: 137 HYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
             SY V+ G D+I+PVD+Y+PGCPP  EA  YG++ LQ+K++
Sbjct: 137 KKSYHVLNGVDKILPVDVYIPGCPPRPEAFYYGMMQLQRKVK 178


>gi|55376749|ref|YP_134600.1| NADH dehydrogenase/oxidoreductase [Haloarcula marismortui ATCC
           43049]
 gi|55229474|gb|AAV44894.1| NADH dehydrogenase/oxidoreductase [Haloarcula marismortui ATCC
           43049]
          Length = 228

 Score =  169 bits (428), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 72/141 (51%), Positives = 103/141 (73%), Gaps = 1/141 (0%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQSDVM 96
           F++T  D  + W R  S+  + FG+ACC +EMM     ++DL+RF    PRASPRQ+D++
Sbjct: 40  FILTKFDTFLNWVRGSSMFVLQFGIACCTIEMMGTLATKHDLDRFAAGVPRASPRQADLI 99

Query: 97  IVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV 156
           IV GT+ +K A  ++RVYDQMPEP++V+SMGSC   GG +   Y+V++G ++++PVDI+V
Sbjct: 100 IVPGTIVSKFAPRMKRVYDQMPEPKFVVSMGSCTISGGPFQEGYNVIKGAEQVIPVDIHV 159

Query: 157 PGCPPTAEALIYGILLLQKKI 177
           PGCPP  EALIYGI  LQ++I
Sbjct: 160 PGCPPRPEALIYGIAKLQERI 180


>gi|309812337|ref|ZP_07706092.1| NADH-quinone oxidoreductase, B subunit [Dermacoccus sp. Ellin185]
 gi|308433642|gb|EFP57519.1| NADH-quinone oxidoreductase, B subunit [Dermacoccus sp. Ellin185]
          Length = 249

 Score =  169 bits (428), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 77/133 (57%), Positives = 100/133 (75%), Gaps = 1/133 (0%)

Query: 46  LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS-PRQSDVMIVAGTLTN 104
           ++ W R  SL    FGLACCA+E +  SM R+D  R G  P A  PRQ+D+M+V+GT+T+
Sbjct: 53  VLNWGRRYSLWVFNFGLACCAIEFIAGSMSRHDFIRLGVIPFAPGPRQADLMVVSGTVTD 112

Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164
           KMA A+RR+YDQMPEP+YVIS G+C+N GG Y  SYSV +G D++VPVD+YVPGCPP  E
Sbjct: 113 KMAPAVRRLYDQMPEPKYVISFGACSNSGGPYWDSYSVTKGVDQLVPVDVYVPGCPPRPE 172

Query: 165 ALIYGILLLQKKI 177
           AL+ GI+ LQ +I
Sbjct: 173 ALLQGIVTLQNQI 185


>gi|269128612|ref|YP_003301982.1| NADH-quinone oxidoreductase subunit B [Thermomonospora curvata DSM
           43183]
 gi|268313570|gb|ACY99944.1| NADH-quinone oxidoreductase, B subunit [Thermomonospora curvata DSM
           43183]
          Length = 183

 Score =  169 bits (427), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 81/143 (56%), Positives = 107/143 (74%), Gaps = 2/143 (1%)

Query: 37  GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQSDV 95
           GFL+T+V+Q+V WAR  S    TFGLACCA+EMM A  PR+D  R+G     A+PRQ+D+
Sbjct: 10  GFLLTTVEQVVGWARRSSTWPATFGLACCAIEMMAAGDPRHDFSRWGMERASATPRQADL 69

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
           MIVAG ++ KMA  LR++YDQM EP++VI+MG CA+ GG ++ +Y+VV+G D IVPVDIY
Sbjct: 70  MIVAGRVSQKMAPVLRQIYDQMTEPKWVIAMGVCASSGGMFN-NYAVVQGVDHIVPVDIY 128

Query: 156 VPGCPPTAEALIYGILLLQKKIR 178
           +PGCPP  E LI  I+ L  KI+
Sbjct: 129 LPGCPPRPEMLIDAIVKLHDKIQ 151


>gi|29831425|ref|NP_826059.1| NADH dehydrogenase I chain B [Streptomyces avermitilis MA-4680]
 gi|81718089|sp|Q82DT6|NUOB2_STRAW RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName:
           Full=NADH dehydrogenase I subunit B 2; AltName:
           Full=NDH-1 subunit B 2
 gi|29608540|dbj|BAC72594.1| putative NADH dehydrogenase I chain B (complex I) [Streptomyces
           avermitilis MA-4680]
          Length = 203

 Score =  169 bits (427), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 79/135 (58%), Positives = 103/135 (76%), Gaps = 1/135 (0%)

Query: 46  LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS-PRQSDVMIVAGTLTN 104
           ++ W R  SL    FGLACCA+E + ASM R+D  R G  P A  PRQ+D+M+V+GT+T+
Sbjct: 30  VLNWGRRYSLWVFNFGLACCAIEFIAASMARHDFIRLGVIPFAPGPRQADLMVVSGTVTD 89

Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164
           KMA A++R+Y+QMPEP+YVIS G+C+N GG Y  SYSV +G D+I+PVD+YVPGCPP  E
Sbjct: 90  KMAPAVKRLYEQMPEPKYVISFGACSNCGGPYWDSYSVTKGVDQIIPVDVYVPGCPPRPE 149

Query: 165 ALIYGILLLQKKIRR 179
           AL+ GIL LQ+KI R
Sbjct: 150 ALLQGILKLQEKIAR 164


>gi|238065263|sp|Q0RRW7|NUOB_FRAAA RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
          Length = 281

 Score =  169 bits (427), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 80/142 (56%), Positives = 106/142 (74%), Gaps = 2/142 (1%)

Query: 37  GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95
           G L+ SV++L  W+R  SL   TFGLACCA+EMM     RYDL RFG    RASPRQ+D+
Sbjct: 10  GVLLASVEKLANWSRRSSLWPATFGLACCAIEMMSTGAGRYDLSRFGMEVFRASPRQADL 69

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
           MIVAG ++ KMA  LR++YDQMPEP++V+SMG CA+ GG ++ +Y++V+G D IVPVD+Y
Sbjct: 70  MIVAGRVSQKMAPVLRQIYDQMPEPKWVLSMGVCASSGGMFN-NYAIVQGVDHIVPVDMY 128

Query: 156 VPGCPPTAEALIYGILLLQKKI 177
           +PGCPP  E L+  I+ L +KI
Sbjct: 129 LPGCPPRPEMLMDAIIKLHEKI 150


>gi|291298799|ref|YP_003510077.1| NADH-quinone oxidoreductase subunit B [Stackebrandtia nassauensis
           DSM 44728]
 gi|290568019|gb|ADD40984.1| NADH-quinone oxidoreductase, B subunit [Stackebrandtia nassauensis
           DSM 44728]
          Length = 216

 Score =  169 bits (427), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 80/142 (56%), Positives = 103/142 (72%), Gaps = 2/142 (1%)

Query: 37  GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95
           G L+TSV++LV W R  S    TFGLACCA+EMM     RYD  RFG    RASPRQ+D+
Sbjct: 10  GILLTSVEKLVNWTRKASFWPATFGLACCAIEMMATGAARYDTARFGMEVFRASPRQADL 69

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
           MIVAG ++ KMA  LR++YDQM EP++V+SMG CA+ GG ++ +Y++V+G D +VPVDIY
Sbjct: 70  MIVAGRVSQKMAPVLRQIYDQMSEPKWVLSMGVCASSGGMFN-NYAIVQGVDHVVPVDIY 128

Query: 156 VPGCPPTAEALIYGILLLQKKI 177
           +PGCPP  E L+  IL L  KI
Sbjct: 129 LPGCPPRPEMLLDAILKLHDKI 150


>gi|86739252|ref|YP_479652.1| NADH dehydrogenase subunit B [Frankia sp. CcI3]
 gi|123765293|sp|Q2JFL9|NUOB_FRASC RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|86566114|gb|ABD09923.1| NADH dehydrogenase subunit B [Frankia sp. CcI3]
          Length = 271

 Score =  169 bits (427), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 80/142 (56%), Positives = 106/142 (74%), Gaps = 2/142 (1%)

Query: 37  GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95
           G L+ SV++L  W+R  SL   TFGLACCA+EMM     RYDL RFG    RASPRQ+D+
Sbjct: 10  GVLLASVEKLANWSRRSSLWPATFGLACCAIEMMSTGAGRYDLSRFGMEVFRASPRQADL 69

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
           MIVAG ++ KMA  LR++YDQMPEP++V+SMG CA+ GG ++ +Y++V+G D IVPVD+Y
Sbjct: 70  MIVAGRVSQKMAPVLRQIYDQMPEPKWVLSMGVCASSGGMFN-NYAIVQGVDHIVPVDMY 128

Query: 156 VPGCPPTAEALIYGILLLQKKI 177
           +PGCPP  E L+  I+ L +KI
Sbjct: 129 LPGCPPRPEMLMDAIIKLHEKI 150


>gi|262200419|ref|YP_003271627.1| NADH-quinone oxidoreductase subunit B [Gordonia bronchialis DSM
           43247]
 gi|262083766|gb|ACY19734.1| NADH-quinone oxidoreductase, B subunit [Gordonia bronchialis DSM
           43247]
          Length = 184

 Score =  169 bits (427), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 80/145 (55%), Positives = 111/145 (76%), Gaps = 2/145 (1%)

Query: 37  GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APRASPRQSDV 95
           GFL+++V++L  + R GSL   TFGLACCA+EMM  +  RYDL RFG  A RASPRQ+D+
Sbjct: 10  GFLLSTVEELAGFMRKGSLWPATFGLACCAIEMMATTSGRYDLARFGMEAFRASPRQADL 69

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
           MIVAG ++ KMA  LR++YDQM EP++V++MG CA+ GG ++ +Y++V+G D +VPVDIY
Sbjct: 70  MIVAGRVSQKMAPVLRQIYDQMVEPKWVLAMGVCASSGGMFN-NYAIVQGVDHVVPVDIY 128

Query: 156 VPGCPPTAEALIYGILLLQKKIRRV 180
           +PGCPP  E L+  IL L +KI+ +
Sbjct: 129 LPGCPPRPEMLLNAILKLHEKIQEM 153


>gi|291437889|ref|ZP_06577279.1| NADH dehydrogenase subunit NuoB2 [Streptomyces ghanaensis ATCC
           14672]
 gi|291340784|gb|EFE67740.1| NADH dehydrogenase subunit NuoB2 [Streptomyces ghanaensis ATCC
           14672]
          Length = 229

 Score =  169 bits (427), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 79/135 (58%), Positives = 103/135 (76%), Gaps = 1/135 (0%)

Query: 46  LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA-SPRQSDVMIVAGTLTN 104
           ++ W R  SL    FGLACCA+E + ASM R+D  R G  P A  PRQ+D+M+V+GT+T+
Sbjct: 46  VLNWGRRYSLWVFNFGLACCAIEFIAASMARHDFIRLGVIPFAPGPRQADLMVVSGTVTD 105

Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164
           KMA A++R+Y+QMPEP+YVIS G+C+N GG Y  SYSV +G D+I+PVD+YVPGCPP  E
Sbjct: 106 KMAPAVKRLYEQMPEPKYVISFGACSNCGGPYWDSYSVTKGVDQIIPVDVYVPGCPPRPE 165

Query: 165 ALIYGILLLQKKIRR 179
           AL+ GIL LQ+KI R
Sbjct: 166 ALLQGILKLQEKIAR 180


>gi|239929563|ref|ZP_04686516.1| NADH dehydrogenase I chain B [Streptomyces ghanaensis ATCC 14672]
          Length = 231

 Score =  169 bits (427), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 79/135 (58%), Positives = 103/135 (76%), Gaps = 1/135 (0%)

Query: 46  LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA-SPRQSDVMIVAGTLTN 104
           ++ W R  SL    FGLACCA+E + ASM R+D  R G  P A  PRQ+D+M+V+GT+T+
Sbjct: 48  VLNWGRRYSLWVFNFGLACCAIEFIAASMARHDFIRLGVIPFAPGPRQADLMVVSGTVTD 107

Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164
           KMA A++R+Y+QMPEP+YVIS G+C+N GG Y  SYSV +G D+I+PVD+YVPGCPP  E
Sbjct: 108 KMAPAVKRLYEQMPEPKYVISFGACSNCGGPYWDSYSVTKGVDQIIPVDVYVPGCPPRPE 167

Query: 165 ALIYGILLLQKKIRR 179
           AL+ GIL LQ+KI R
Sbjct: 168 ALLQGILKLQEKIAR 182


>gi|296268308|ref|YP_003650940.1| NADH-quinone oxidoreductase subunit B [Thermobispora bispora DSM
           43833]
 gi|296091095|gb|ADG87047.1| NADH-quinone oxidoreductase, B subunit [Thermobispora bispora DSM
           43833]
          Length = 170

 Score =  169 bits (427), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 78/133 (58%), Positives = 104/133 (78%), Gaps = 1/133 (0%)

Query: 46  LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS-PRQSDVMIVAGTLTN 104
           ++ W R  SL    FGLACCA+E +  SM R+D  RFG  P A+ PRQ+D+MIV+GT+T+
Sbjct: 23  VLNWGRRYSLWVFNFGLACCAIEFIATSMSRHDFIRFGVIPFANGPRQADLMIVSGTVTD 82

Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164
           KMA A++R+Y+QMP+P+YVIS G+C+N GG Y  SYSV +G D+I+PVD+YVPGCPP  E
Sbjct: 83  KMAPAVKRLYEQMPDPKYVISFGACSNCGGPYWDSYSVTKGVDQIIPVDVYVPGCPPRPE 142

Query: 165 ALIYGILLLQKKI 177
           AL++GIL LQ+KI
Sbjct: 143 ALLHGILKLQEKI 155


>gi|21222983|ref|NP_628762.1| NADH dehydrogenase subunit NuoB2 [Streptomyces coelicolor A3(2)]
 gi|81621857|sp|Q9F2W1|NUOB2_STRCO RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName:
           Full=NADH dehydrogenase I subunit B 2; AltName:
           Full=NDH-1 subunit B 2
 gi|10129745|emb|CAC08301.1| NADH dehydrogenase subunit NuoB2 [Streptomyces coelicolor A3(2)]
          Length = 232

 Score =  169 bits (427), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 79/135 (58%), Positives = 103/135 (76%), Gaps = 1/135 (0%)

Query: 46  LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS-PRQSDVMIVAGTLTN 104
           ++ W R  SL    FGLACCA+E + ASM R+D  R G  P A  PRQ+D+M+V+GT+T+
Sbjct: 34  VLNWGRRYSLWVFNFGLACCAIEFIAASMARHDFIRLGVIPFAPGPRQADLMVVSGTVTD 93

Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164
           KMA A++R+Y+QMPEP+YVIS G+C+N GG Y  SYSV +G D+I+PVD+YVPGCPP  E
Sbjct: 94  KMAPAVKRLYEQMPEPKYVISFGACSNCGGPYWDSYSVTKGVDQIIPVDVYVPGCPPRPE 153

Query: 165 ALIYGILLLQKKIRR 179
           AL+ GIL LQ+KI R
Sbjct: 154 ALLQGILKLQEKIAR 168


>gi|256785904|ref|ZP_05524335.1| NADH dehydrogenase subunit NuoB2 [Streptomyces lividans TK24]
          Length = 232

 Score =  168 bits (426), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 79/135 (58%), Positives = 103/135 (76%), Gaps = 1/135 (0%)

Query: 46  LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS-PRQSDVMIVAGTLTN 104
           ++ W R  SL    FGLACCA+E + ASM R+D  R G  P A  PRQ+D+M+V+GT+T+
Sbjct: 36  VLNWGRRYSLWVFNFGLACCAIEFIAASMARHDFIRLGVIPFAPGPRQADLMVVSGTVTD 95

Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164
           KMA A++R+Y+QMPEP+YVIS G+C+N GG Y  SYSV +G D+I+PVD+YVPGCPP  E
Sbjct: 96  KMAPAVKRLYEQMPEPKYVISFGACSNCGGPYWDSYSVTKGVDQIIPVDVYVPGCPPRPE 155

Query: 165 ALIYGILLLQKKIRR 179
           AL+ GIL LQ+KI R
Sbjct: 156 ALLQGILKLQEKIAR 170


>gi|159036128|ref|YP_001535381.1| NADH-quinone oxidoreductase, B subunit [Salinispora arenicola
           CNS-205]
 gi|238065019|sp|A8M069|NUOB1_SALAI RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName:
           Full=NADH dehydrogenase I subunit B 1; AltName:
           Full=NDH-1 subunit B 1
 gi|157914963|gb|ABV96390.1| NADH-quinone oxidoreductase, B subunit [Salinispora arenicola
           CNS-205]
          Length = 188

 Score =  168 bits (426), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 78/137 (56%), Positives = 103/137 (75%), Gaps = 1/137 (0%)

Query: 46  LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA-SPRQSDVMIVAGTLTN 104
           ++ W R  SL    FGLACCA+E +  SM R+D  R G  P A  PRQ+D+M+V+GT+T+
Sbjct: 14  VLNWGRRYSLWVFNFGLACCAIEFIATSMSRHDFMRLGVIPFAHGPRQADLMVVSGTVTD 73

Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164
           KMA A++R+YDQMPEP+YVIS G+C+N GG Y  SYSV +G D+++PVD+YVPGCPP  E
Sbjct: 74  KMAPAIKRLYDQMPEPKYVISFGACSNCGGPYWDSYSVTKGVDQLIPVDVYVPGCPPRPE 133

Query: 165 ALIYGILLLQKKIRRVG 181
           AL++GIL LQ+KI   G
Sbjct: 134 ALLHGILRLQEKIAAEG 150


>gi|46446194|ref|YP_007559.1| NADH-ubiquinone oxidoreductase chain B [Candidatus Protochlamydia
           amoebophila UWE25]
 gi|81627441|sp|Q6MDR5|NUOB_PARUW RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|46399835|emb|CAF23284.1| probable NADH-ubiquinone oxidoreductase chain B [Candidatus
           Protochlamydia amoebophila UWE25]
          Length = 164

 Score =  168 bits (426), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 78/142 (54%), Positives = 108/142 (76%), Gaps = 2/142 (1%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVM 96
           FL+  +++LV WAR+ SL    FGLACCA+EMM  +  RYDL RFG    RASPRQSDVM
Sbjct: 12  FLIAPLEKLVNWARSNSLWPAQFGLACCAIEMMSTAASRYDLARFGMEVFRASPRQSDVM 71

Query: 97  IVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV 156
           IVAG ++ KMA  L+ +Y+QM EP++VI+MG CA+ GG Y+ +Y++++G D++VPVD+Y+
Sbjct: 72  IVAGRVSQKMAPVLQTIYEQMLEPKWVIAMGDCASCGGVYN-NYAIIQGVDKLVPVDVYL 130

Query: 157 PGCPPTAEALIYGILLLQKKIR 178
            GCPP  EALI  +++LQ KI+
Sbjct: 131 AGCPPRPEALIDALIMLQNKIK 152


>gi|257054393|ref|YP_003132225.1| NADH dehydrogenase subunit B [Saccharomonospora viridis DSM 43017]
 gi|256584265|gb|ACU95398.1| NADH dehydrogenase subunit B [Saccharomonospora viridis DSM 43017]
          Length = 182

 Score =  168 bits (426), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 81/151 (53%), Positives = 110/151 (72%), Gaps = 6/151 (3%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFG---FAPR 87
            E    GFL+T+++ +V WAR  S+   TFGLACCA+EMM     RYD+ RFG   FA  
Sbjct: 4   EEKLPNGFLLTTLEGVVNWARKNSMWPATFGLACCAIEMMTTGGSRYDIARFGMERFA-- 61

Query: 88  ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCD 147
           A+PRQ+D+MIVAG +T KMA  LR++YDQMPEP++V++MG CA+ GG ++ +Y+VV+G D
Sbjct: 62  ATPRQADLMIVAGRVTQKMAPVLRQIYDQMPEPKWVLAMGVCASSGGMFN-NYAVVQGVD 120

Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
            IVPVD+Y+PGCPP  E L+  IL L  K++
Sbjct: 121 HIVPVDMYLPGCPPRPEMLLDAILKLHAKVQ 151


>gi|255007685|ref|ZP_05279811.1| NADH-quinone oxidoreductase chain B [Bacteroides fragilis 3_1_12]
          Length = 196

 Score =  168 bits (426), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 77/162 (47%), Positives = 110/162 (67%), Gaps = 6/162 (3%)

Query: 18  SLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRY 77
           SLEK+  + +   + +      V  +D L+ W R+ SL  +TF  +CC +E M     RY
Sbjct: 22  SLEKMVKELNEGGANV-----FVGVLDDLINWGRSNSLWPLTFATSCCGIEFMALGAARY 76

Query: 78  DLERFGF-APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY 136
           D+ RFGF   RASPRQ+D+++V GT+TNKMA  L+R+YDQM +P+YVI++G CA  GG +
Sbjct: 77  DMARFGFEVARASPRQADMIMVCGTITNKMAPVLKRLYDQMADPKYVIAVGGCAVSGGPF 136

Query: 137 HYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
             SY VV G D+I+PVD+Y+PGCPP  EA  YG++ LQ+K++
Sbjct: 137 RKSYHVVNGVDKILPVDVYIPGCPPRPEAFYYGMMQLQRKVK 178


>gi|53712161|ref|YP_098153.1| NADH dehydrogenase subunit B [Bacteroides fragilis YCH46]
 gi|60680345|ref|YP_210489.1| NADH dehydrogenase subunit B [Bacteroides fragilis NCTC 9343]
 gi|253563801|ref|ZP_04841258.1| NADH dehydrogenase I [Bacteroides sp. 3_2_5]
 gi|265765492|ref|ZP_06093767.1| NADH dehydrogenase I [Bacteroides sp. 2_1_16]
 gi|81316585|sp|Q5LH49|NUOB_BACFN RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|81608667|sp|Q64Y07|NUOB_BACFR RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|52215026|dbj|BAD47619.1| NADH dehydrogenase I chain B [Bacteroides fragilis YCH46]
 gi|60491779|emb|CAH06537.1| NADH-quinone oxidoreductase chain B [Bacteroides fragilis NCTC
           9343]
 gi|251947577|gb|EES87859.1| NADH dehydrogenase I [Bacteroides sp. 3_2_5]
 gi|263254876|gb|EEZ26310.1| NADH dehydrogenase I [Bacteroides sp. 2_1_16]
 gi|301161878|emb|CBW21422.1| NADH-quinone oxidoreductase chain B [Bacteroides fragilis 638R]
          Length = 196

 Score =  168 bits (426), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 77/162 (47%), Positives = 110/162 (67%), Gaps = 6/162 (3%)

Query: 18  SLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRY 77
           SLEK+  + +   + +      V  +D L+ W R+ SL  +TF  +CC +E M     RY
Sbjct: 22  SLEKMVKELNEGGANV-----FVGVLDDLINWGRSNSLWPLTFATSCCGIEFMALGAARY 76

Query: 78  DLERFGF-APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY 136
           D+ RFGF   RASPRQ+D+++V GT+TNKMA  L+R+YDQM +P+YVI++G CA  GG +
Sbjct: 77  DMARFGFEVARASPRQADMIMVCGTITNKMAPVLKRLYDQMADPKYVIAVGGCAVSGGPF 136

Query: 137 HYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
             SY VV G D+I+PVD+Y+PGCPP  EA  YG++ LQ+K++
Sbjct: 137 RKSYHVVNGVDKILPVDVYIPGCPPRPEAFYYGMMQLQRKVK 178


>gi|311896699|dbj|BAJ29107.1| putative NADH-quinone oxidoreductase subunit B [Kitasatospora setae
           KM-6054]
          Length = 209

 Score =  168 bits (426), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 80/137 (58%), Positives = 103/137 (75%), Gaps = 1/137 (0%)

Query: 42  SVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS-PRQSDVMIVAG 100
            V  ++ W R  SL    FGLACCA+E + ASM ++D  R G  P A  PRQ+D+MIV+G
Sbjct: 44  PVKVVLNWGRRYSLWCFNFGLACCAIEFIAASMAKHDFIRMGVIPFAPGPRQADLMIVSG 103

Query: 101 TLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCP 160
           T+T+KMA A++R+Y+QMPEP+YVIS G+CAN GG Y  SYSV +G D+I+PVD+YVPGCP
Sbjct: 104 TVTDKMAPAVKRLYEQMPEPKYVISFGACANSGGPYWDSYSVTKGVDQIIPVDVYVPGCP 163

Query: 161 PTAEALIYGILLLQKKI 177
           P  EAL+ GIL LQ+KI
Sbjct: 164 PRPEALLQGILKLQEKI 180


>gi|313145380|ref|ZP_07807573.1| trifunctional NADH dehydrogenase I subunit B/C/D [Bacteroides
           fragilis 3_1_12]
 gi|313134147|gb|EFR51507.1| trifunctional NADH dehydrogenase I subunit B/C/D [Bacteroides
           fragilis 3_1_12]
          Length = 203

 Score =  168 bits (426), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 77/162 (47%), Positives = 110/162 (67%), Gaps = 6/162 (3%)

Query: 18  SLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRY 77
           SLEK+  + +   + +      V  +D L+ W R+ SL  +TF  +CC +E M     RY
Sbjct: 29  SLEKMVKELNEGGANV-----FVGVLDDLINWGRSNSLWPLTFATSCCGIEFMALGAARY 83

Query: 78  DLERFGF-APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY 136
           D+ RFGF   RASPRQ+D+++V GT+TNKMA  L+R+YDQM +P+YVI++G CA  GG +
Sbjct: 84  DMARFGFEVARASPRQADMIMVCGTITNKMAPVLKRLYDQMADPKYVIAVGGCAVSGGPF 143

Query: 137 HYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
             SY VV G D+I+PVD+Y+PGCPP  EA  YG++ LQ+K++
Sbjct: 144 RKSYHVVNGVDKILPVDVYIPGCPPRPEAFYYGMMQLQRKVK 185


>gi|148262416|ref|YP_001229122.1| trifunctional NADH dehydrogenase I subunit B/C/D [Geobacter
           uraniireducens Rf4]
 gi|218528048|sp|A5GCZ4|NUBCD_GEOUR RecName: Full=NADH-quinone oxidoreductase subunit B/C/D; AltName:
           Full=NADH dehydrogenase I subunit B/C/D; AltName:
           Full=NDH-1 subunit B/C/D
 gi|146395916|gb|ABQ24549.1| NADH dehydrogenase subunit D / NADH dehydrogenase subunit B / NADH
           dehydrogenase subunit C [Geobacter uraniireducens Rf4]
          Length = 793

 Score =  168 bits (426), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 77/145 (53%), Positives = 107/145 (73%), Gaps = 2/145 (1%)

Query: 35  HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQS 93
           H   ++ ++D L+ W R  SL  M FGL+CC VEMM +   RYD+ RFG    R +PR++
Sbjct: 9   HNNVILANLDDLINWGRANSLWPMFFGLSCCFVEMMTSFTSRYDISRFGAEVLRGTPREA 68

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD 153
           D+M++AGT+  KMA ++ R+Y+QM EPR+VISMGSCAN GG Y   YSVV+G ++I+PVD
Sbjct: 69  DLMVIAGTVFKKMAPSILRLYEQMAEPRWVISMGSCANSGGMYDV-YSVVQGVNQIIPVD 127

Query: 154 IYVPGCPPTAEALIYGILLLQKKIR 178
           +YVPGCPP  EA + G++LLQ+KI+
Sbjct: 128 VYVPGCPPRPEAFLQGLMLLQEKIK 152


>gi|48478473|ref|YP_024179.1| NADH dehydrogenase subunit B [Picrophilus torridus DSM 9790]
 gi|48431121|gb|AAT43986.1| NADH-quinone oxidoreductase chain B [Picrophilus torridus DSM 9790]
          Length = 154

 Score =  168 bits (426), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 81/143 (56%), Positives = 105/143 (73%), Gaps = 1/143 (0%)

Query: 37  GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95
           G+ +T+V++ + WAR+ SL  +T GLACCA+EMM       D+ RFG    R SPRQ+D+
Sbjct: 7   GYQLTTVEKALEWARSNSLWPLTMGLACCAIEMMATQGSNLDIARFGSEIFRNSPRQADL 66

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
           MIVAGT T +MA  +RR+Y++MP P+YVI+MG C   GG Y   YSVV G DR++PVD+Y
Sbjct: 67  MIVAGTTTKRMAPRVRRIYEEMPYPKYVIAMGVCVIQGGPYVDGYSVVLGVDRVIPVDVY 126

Query: 156 VPGCPPTAEALIYGILLLQKKIR 178
           VPGCPP+ +AL  GILLLQKKIR
Sbjct: 127 VPGCPPSPQALTNGILLLQKKIR 149


>gi|307328659|ref|ZP_07607832.1| NADH-quinone oxidoreductase, B subunit [Streptomyces violaceusniger
           Tu 4113]
 gi|306885771|gb|EFN16784.1| NADH-quinone oxidoreductase, B subunit [Streptomyces violaceusniger
           Tu 4113]
          Length = 231

 Score =  168 bits (426), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 78/135 (57%), Positives = 103/135 (76%), Gaps = 1/135 (0%)

Query: 46  LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS-PRQSDVMIVAGTLTN 104
           ++ W R  SL    FGLACCA+E + ASM R+D  R G  P A  PRQ+D+M+V+GT+T+
Sbjct: 56  VLNWGRRYSLWVFNFGLACCAIEFIAASMARHDFIRLGVIPFAPGPRQADLMVVSGTVTD 115

Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164
           KMA A++R+Y+QMPEP+YVIS G+C+N GG Y  SY+V +G D+I+PVD+YVPGCPP  E
Sbjct: 116 KMAPAVKRLYEQMPEPKYVISFGACSNCGGPYWDSYAVTKGVDQIIPVDVYVPGCPPRPE 175

Query: 165 ALIYGILLLQKKIRR 179
           AL+ GIL LQ+KI R
Sbjct: 176 ALLQGILKLQEKIAR 190


>gi|289769797|ref|ZP_06529175.1| NADH dehydrogenase subunit NuoB2 [Streptomyces lividans TK24]
 gi|289699996|gb|EFD67425.1| NADH dehydrogenase subunit NuoB2 [Streptomyces lividans TK24]
          Length = 219

 Score =  168 bits (426), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 79/135 (58%), Positives = 103/135 (76%), Gaps = 1/135 (0%)

Query: 46  LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS-PRQSDVMIVAGTLTN 104
           ++ W R  SL    FGLACCA+E + ASM R+D  R G  P A  PRQ+D+M+V+GT+T+
Sbjct: 23  VLNWGRRYSLWVFNFGLACCAIEFIAASMARHDFIRLGVIPFAPGPRQADLMVVSGTVTD 82

Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164
           KMA A++R+Y+QMPEP+YVIS G+C+N GG Y  SYSV +G D+I+PVD+YVPGCPP  E
Sbjct: 83  KMAPAVKRLYEQMPEPKYVISFGACSNCGGPYWDSYSVTKGVDQIIPVDVYVPGCPPRPE 142

Query: 165 ALIYGILLLQKKIRR 179
           AL+ GIL LQ+KI R
Sbjct: 143 ALLQGILKLQEKIAR 157


>gi|237714284|ref|ZP_04544765.1| trifunctional NADH dehydrogenase I subunit B/C/D [Bacteroides sp.
           D1]
 gi|229445776|gb|EEO51567.1| trifunctional NADH dehydrogenase I subunit B/C/D [Bacteroides sp.
           D1]
          Length = 207

 Score =  168 bits (426), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 71/137 (51%), Positives = 100/137 (72%), Gaps = 1/137 (0%)

Query: 43  VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APRASPRQSDVMIVAGT 101
           +D  + W R+ SL  +TF  +CC +E M     RYD+ RFGF   RASPRQ+D+++V GT
Sbjct: 49  LDDFINWGRSNSLWPLTFATSCCGIEFMALGAARYDMARFGFEVARASPRQADMIMVCGT 108

Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP 161
           +TNKMA  L+R+YDQMP+P+YV+++G CA  GG +  SY VV G D+I+PVD+Y+PGCPP
Sbjct: 109 ITNKMAPVLKRLYDQMPDPKYVVAVGGCAVSGGPFKKSYHVVNGVDKILPVDVYIPGCPP 168

Query: 162 TAEALIYGILLLQKKIR 178
             EA  YG++ LQ+K++
Sbjct: 169 RPEAFYYGMMQLQRKVK 185


>gi|332881564|ref|ZP_08449213.1| NADH-quinone oxidoreductase subunit B [Capnocytophaga sp. oral
           taxon 329 str. F0087]
 gi|332680562|gb|EGJ53510.1| NADH-quinone oxidoreductase subunit B [Capnocytophaga sp. oral
           taxon 329 str. F0087]
          Length = 204

 Score =  168 bits (426), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 73/143 (51%), Positives = 103/143 (72%), Gaps = 1/143 (0%)

Query: 37  GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQSDV 95
           G ++ ++D L+ W R+ SL  +TFG +CCA+E M     RYD+ RFGF   R SPRQ+D+
Sbjct: 37  GIVLGTLDDLINWGRSNSLWSLTFGTSCCAIEFMALGAARYDMARFGFEVTRNSPRQADM 96

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
           ++V GT+T +MA  L+R+YDQM EP+YV+++G C   GG +  SY VV G DRI+PVD+Y
Sbjct: 97  IMVLGTITYRMAPVLKRLYDQMAEPKYVVAVGGCTISGGPFRRSYHVVNGIDRIIPVDVY 156

Query: 156 VPGCPPTAEALIYGILLLQKKIR 178
           +PGCPP  EA  YG++ LQ+KI+
Sbjct: 157 IPGCPPRPEAFFYGMMQLQRKIK 179


>gi|160886847|ref|ZP_02067850.1| hypothetical protein BACOVA_04861 [Bacteroides ovatus ATCC 8483]
 gi|260171803|ref|ZP_05758215.1| NADH dehydrogenase I, chain B [Bacteroides sp. D2]
 gi|299148405|ref|ZP_07041467.1| proton-translocating NADH-quinone oxidoreductase, B subunit
           [Bacteroides sp. 3_1_23]
 gi|315920115|ref|ZP_07916355.1| NADH-quinone oxidoreductase [Bacteroides sp. D2]
 gi|156107258|gb|EDO09003.1| hypothetical protein BACOVA_04861 [Bacteroides ovatus ATCC 8483]
 gi|298513166|gb|EFI37053.1| proton-translocating NADH-quinone oxidoreductase, B subunit
           [Bacteroides sp. 3_1_23]
 gi|313693990|gb|EFS30825.1| NADH-quinone oxidoreductase [Bacteroides sp. D2]
          Length = 200

 Score =  168 bits (426), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 71/137 (51%), Positives = 100/137 (72%), Gaps = 1/137 (0%)

Query: 43  VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APRASPRQSDVMIVAGT 101
           +D  + W R+ SL  +TF  +CC +E M     RYD+ RFGF   RASPRQ+D+++V GT
Sbjct: 42  LDDFINWGRSNSLWPLTFATSCCGIEFMALGAARYDMARFGFEVARASPRQADMIMVCGT 101

Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP 161
           +TNKMA  L+R+YDQMP+P+YV+++G CA  GG +  SY VV G D+I+PVD+Y+PGCPP
Sbjct: 102 ITNKMAPVLKRLYDQMPDPKYVVAVGGCAVSGGPFKKSYHVVNGVDKILPVDVYIPGCPP 161

Query: 162 TAEALIYGILLLQKKIR 178
             EA  YG++ LQ+K++
Sbjct: 162 RPEAFYYGMMQLQRKVK 178


>gi|145592956|ref|YP_001157253.1| NADH-quinone oxidoreductase, B subunit [Salinispora tropica
           CNB-440]
 gi|238065020|sp|A4X1X5|NUOB1_SALTO RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName:
           Full=NADH dehydrogenase I subunit B 1; AltName:
           Full=NDH-1 subunit B 1
 gi|145302293|gb|ABP52875.1| NADH-quinone oxidoreductase, B subunit [Salinispora tropica
           CNB-440]
          Length = 188

 Score =  168 bits (426), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 77/133 (57%), Positives = 102/133 (76%), Gaps = 1/133 (0%)

Query: 46  LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA-SPRQSDVMIVAGTLTN 104
           ++ W R  SL    FGLACCA+E +  SM R+D  R G  P A  PRQ+D+M+V+GT+T+
Sbjct: 14  VLNWGRRYSLWVFNFGLACCAIEFIATSMSRHDFMRLGVIPFAHGPRQADLMVVSGTVTD 73

Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164
           KMA A++R+YDQMPEP+YVIS G+C+N GG Y  SYSV +G D+++PVD+YVPGCPP  E
Sbjct: 74  KMAPAIKRLYDQMPEPKYVISFGACSNCGGPYWDSYSVTKGVDQLIPVDVYVPGCPPRPE 133

Query: 165 ALIYGILLLQKKI 177
           AL++GIL LQ+KI
Sbjct: 134 ALLHGILRLQEKI 146


>gi|239980104|ref|ZP_04702628.1| NADH dehydrogenase subunit NuoB2 [Streptomyces albus J1074]
          Length = 216

 Score =  168 bits (425), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 78/135 (57%), Positives = 103/135 (76%), Gaps = 1/135 (0%)

Query: 46  LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS-PRQSDVMIVAGTLTN 104
           ++ W R  SL    FGLACCA+E + ASM R+D  R G  P A  PRQ+D+M+V+GT+T+
Sbjct: 41  VLNWGRRYSLWVFNFGLACCAIEFIAASMARHDFMRLGVIPFAPGPRQADLMVVSGTVTD 100

Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164
           KMA A++R+Y+QMPEP+YVIS G+C+N GG Y  SYSV +G D+I+PVD+YVPGCPP  E
Sbjct: 101 KMAPAVKRLYEQMPEPKYVISFGACSNCGGPYWDSYSVTKGVDQIIPVDVYVPGCPPRPE 160

Query: 165 ALIYGILLLQKKIRR 179
           AL+ GI+ LQ+KI R
Sbjct: 161 ALLQGIIKLQEKIAR 175


>gi|153807451|ref|ZP_01960119.1| hypothetical protein BACCAC_01731 [Bacteroides caccae ATCC 43185]
 gi|149129813|gb|EDM21025.1| hypothetical protein BACCAC_01731 [Bacteroides caccae ATCC 43185]
          Length = 200

 Score =  168 bits (425), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 71/137 (51%), Positives = 100/137 (72%), Gaps = 1/137 (0%)

Query: 43  VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APRASPRQSDVMIVAGT 101
           +D  + W R+ SL  +TF  +CC +E M     RYD+ RFGF   RASPRQ+D+++V GT
Sbjct: 42  LDDFINWGRSNSLWPLTFATSCCGIEFMALGAARYDMARFGFEVARASPRQADMIMVCGT 101

Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP 161
           +TNKMA  L+R+YDQMP+P+YV+++G CA  GG +  SY VV G D+I+PVD+Y+PGCPP
Sbjct: 102 ITNKMAPVLKRLYDQMPDPKYVVAVGGCAVSGGPFKKSYHVVNGVDKILPVDVYIPGCPP 161

Query: 162 TAEALIYGILLLQKKIR 178
             EA  YG++ LQ+K++
Sbjct: 162 RPEAFYYGMMQLQRKVK 178


>gi|226306213|ref|YP_002766173.1| NADH-quinone oxidoreductase chain B [Rhodococcus erythropolis PR4]
 gi|229490898|ref|ZP_04384733.1| NADH-quinone oxidoreductase subunit b [Rhodococcus erythropolis
           SK121]
 gi|259514682|sp|C0ZYJ9|NUOB_RHOE4 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|226185330|dbj|BAH33434.1| NADH-quinone oxidoreductase chain B [Rhodococcus erythropolis PR4]
 gi|229322288|gb|EEN88074.1| NADH-quinone oxidoreductase subunit b [Rhodococcus erythropolis
           SK121]
          Length = 184

 Score =  168 bits (425), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 82/151 (54%), Positives = 111/151 (73%), Gaps = 2/151 (1%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APRAS 89
            E    GFL+T+V+ L  +AR GSL   TFGLACCA+EMM  +  R+DL RFG  A RAS
Sbjct: 4   EEKLPSGFLLTTVEGLAGYARKGSLWPATFGLACCAIEMMATTSGRFDLARFGMEAFRAS 63

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQ+D++IVAG ++ KM   LR+VYDQM EP++V++MG CA+ GG ++ +Y+VV+G D I
Sbjct: 64  PRQADLLIVAGRVSQKMGPVLRQVYDQMAEPKWVLAMGVCASSGGMFN-NYAVVQGVDHI 122

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           VPVDIY+PGCPP  E L+  I+ L +KI+ +
Sbjct: 123 VPVDIYLPGCPPRPEMLLNAIIELHRKIQEM 153


>gi|291451958|ref|ZP_06591348.1| NADH dehydrogenase subunit NuoB2 [Streptomyces albus J1074]
 gi|291354907|gb|EFE81809.1| NADH dehydrogenase subunit NuoB2 [Streptomyces albus J1074]
          Length = 214

 Score =  168 bits (425), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 78/135 (57%), Positives = 103/135 (76%), Gaps = 1/135 (0%)

Query: 46  LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS-PRQSDVMIVAGTLTN 104
           ++ W R  SL    FGLACCA+E + ASM R+D  R G  P A  PRQ+D+M+V+GT+T+
Sbjct: 39  VLNWGRRYSLWVFNFGLACCAIEFIAASMARHDFMRLGVIPFAPGPRQADLMVVSGTVTD 98

Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164
           KMA A++R+Y+QMPEP+YVIS G+C+N GG Y  SYSV +G D+I+PVD+YVPGCPP  E
Sbjct: 99  KMAPAVKRLYEQMPEPKYVISFGACSNCGGPYWDSYSVTKGVDQIIPVDVYVPGCPPRPE 158

Query: 165 ALIYGILLLQKKIRR 179
           AL+ GI+ LQ+KI R
Sbjct: 159 ALLQGIIKLQEKIAR 173


>gi|295086644|emb|CBK68167.1| NADH dehydrogenase subunit B [Bacteroides xylanisolvens XB1A]
          Length = 195

 Score =  168 bits (425), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 71/137 (51%), Positives = 100/137 (72%), Gaps = 1/137 (0%)

Query: 43  VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APRASPRQSDVMIVAGT 101
           +D  + W R+ SL  +TF  +CC +E M     RYD+ RFGF   RASPRQ+D+++V GT
Sbjct: 42  LDDFINWGRSNSLWPLTFATSCCGIEFMALGAARYDMARFGFEVARASPRQADMIMVCGT 101

Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP 161
           +TNKMA  L+R+YDQMP+P+YV+++G CA  GG +  SY VV G D+I+PVD+Y+PGCPP
Sbjct: 102 ITNKMAPVLKRLYDQMPDPKYVVAVGGCAVSGGPFKKSYHVVNGVDKILPVDVYIPGCPP 161

Query: 162 TAEALIYGILLLQKKIR 178
             EA  YG++ LQ+K++
Sbjct: 162 RPEAFYYGMMQLQRKVK 178


>gi|237719852|ref|ZP_04550333.1| NADH dehydrogenase subunit I B [Bacteroides sp. 2_2_4]
 gi|262408339|ref|ZP_06084886.1| NADH-quinone oxidoreductase subunit C/D [Bacteroides sp. 2_1_22]
 gi|293373614|ref|ZP_06619962.1| NADH-quinone oxidoreductase, B subunit [Bacteroides ovatus SD CMC
           3f]
 gi|294809425|ref|ZP_06768130.1| NADH-quinone oxidoreductase, B subunit [Bacteroides xylanisolvens
           SD CC 1b]
 gi|298480351|ref|ZP_06998549.1| proton-translocating NADH-quinone oxidoreductase, B subunit
           [Bacteroides sp. D22]
 gi|229451121|gb|EEO56912.1| NADH dehydrogenase subunit I B [Bacteroides sp. 2_2_4]
 gi|262353891|gb|EEZ02984.1| NADH-quinone oxidoreductase subunit C/D [Bacteroides sp. 2_1_22]
 gi|292631439|gb|EFF50069.1| NADH-quinone oxidoreductase, B subunit [Bacteroides ovatus SD CMC
           3f]
 gi|294443361|gb|EFG12123.1| NADH-quinone oxidoreductase, B subunit [Bacteroides xylanisolvens
           SD CC 1b]
 gi|298273632|gb|EFI15195.1| proton-translocating NADH-quinone oxidoreductase, B subunit
           [Bacteroides sp. D22]
          Length = 200

 Score =  168 bits (425), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 71/137 (51%), Positives = 100/137 (72%), Gaps = 1/137 (0%)

Query: 43  VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APRASPRQSDVMIVAGT 101
           +D  + W R+ SL  +TF  +CC +E M     RYD+ RFGF   RASPRQ+D+++V GT
Sbjct: 42  LDDFINWGRSNSLWPLTFATSCCGIEFMALGAARYDMARFGFEVARASPRQADMIMVCGT 101

Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP 161
           +TNKMA  L+R+YDQMP+P+YV+++G CA  GG +  SY VV G D+I+PVD+Y+PGCPP
Sbjct: 102 ITNKMAPVLKRLYDQMPDPKYVVAVGGCAVSGGPFKKSYHVVNGVDKILPVDVYIPGCPP 161

Query: 162 TAEALIYGILLLQKKIR 178
             EA  YG++ LQ+K++
Sbjct: 162 RPEAFYYGMMQLQRKVK 178


>gi|300727166|ref|ZP_07060584.1| NADH dehydrogenase I, b subunit [Prevotella bryantii B14]
 gi|299775552|gb|EFI72144.1| NADH dehydrogenase I, b subunit [Prevotella bryantii B14]
          Length = 254

 Score =  168 bits (425), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 74/162 (45%), Positives = 112/162 (69%), Gaps = 6/162 (3%)

Query: 18  SLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRY 77
           SLEK+ A+ +   + +     ++ S+D  + W R+ S   +TFG +CC +E M     RY
Sbjct: 22  SLEKIAAELNEGGANV-----VLGSLDAAINWGRSNSPWSLTFGTSCCGIEFMAIGCARY 76

Query: 78  DLERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY 136
           D+ RFG+   R SPRQ+D+++ AGT+TNKMA   +R+YD+M EP+YV+++G C   GG +
Sbjct: 77  DMSRFGWEVTRNSPRQADLIMCAGTITNKMAPVFKRLYDEMAEPKYVVAVGGCTISGGPF 136

Query: 137 HYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
             SY+VVRG + +VPVD+Y+PGCPP  EA+IYG++ LQ+KI+
Sbjct: 137 KKSYNVVRGINELVPVDVYIPGCPPRPEAIIYGMMQLQRKIK 178


>gi|134103329|ref|YP_001108990.1| NADH dehydrogenase subunit B [Saccharopolyspora erythraea NRRL
           2338]
 gi|291004452|ref|ZP_06562425.1| NADH dehydrogenase subunit B [Saccharopolyspora erythraea NRRL
           2338]
 gi|238065203|sp|A4FPU0|NUOB_SACEN RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|133915952|emb|CAM06065.1| NADH dehydrogenase I chain B [Saccharopolyspora erythraea NRRL
           2338]
          Length = 220

 Score =  168 bits (425), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 80/148 (54%), Positives = 105/148 (70%), Gaps = 2/148 (1%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RAS 89
            E    G L+ +V++LV W R  S+    FGLACCA+EMM     RYD+ RFG     A+
Sbjct: 4   EEKLPNGILLANVEKLVNWTRKTSVWPAAFGLACCAIEMMTVGGSRYDIARFGMERFSAT 63

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQ+D+M+VAG +TNKMA  LR+VYDQMPEPR+VI+MG CA+ GG ++ +Y+VV+G D +
Sbjct: 64  PRQADLMVVAGRVTNKMAPVLRQVYDQMPEPRWVIAMGVCASSGGMFN-NYAVVQGVDHV 122

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKI 177
           VPVD+Y+PGCPP  E L+  IL L  KI
Sbjct: 123 VPVDMYLPGCPPRPEMLLDAILKLHAKI 150


>gi|271962156|ref|YP_003336352.1| NADH dehydrogenase (quinone) [Streptosporangium roseum DSM 43021]
 gi|270505331|gb|ACZ83609.1| NADH dehydrogenase (quinone) [Streptosporangium roseum DSM 43021]
          Length = 183

 Score =  168 bits (425), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 77/143 (53%), Positives = 107/143 (74%), Gaps = 2/143 (1%)

Query: 37  GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQSDV 95
           GF++++V+Q+  WAR  S+   TFGLACCA+E+M    P++DL RFG     ASPRQ+D+
Sbjct: 10  GFMLSTVEQVAGWARKNSVWPATFGLACCAIELMSTGGPKHDLARFGMERASASPRQADL 69

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
           MIVAG L+ KMA  LR++YDQM EP++VI+MG CA+ GG ++ +Y++V+G D +VPVDIY
Sbjct: 70  MIVAGRLSQKMAPVLRQIYDQMAEPKWVIAMGVCASSGGMFN-NYAIVQGVDHVVPVDIY 128

Query: 156 VPGCPPTAEALIYGILLLQKKIR 178
           +PGCPP  E LI  I+ L  KI+
Sbjct: 129 LPGCPPRPEMLIDAIVKLHDKIQ 151


>gi|189468077|ref|ZP_03016862.1| hypothetical protein BACINT_04471 [Bacteroides intestinalis DSM
           17393]
 gi|189436341|gb|EDV05326.1| hypothetical protein BACINT_04471 [Bacteroides intestinalis DSM
           17393]
          Length = 199

 Score =  168 bits (425), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 71/137 (51%), Positives = 100/137 (72%), Gaps = 1/137 (0%)

Query: 43  VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APRASPRQSDVMIVAGT 101
           +D  + W R+ SL  +TF  +CC +E M     RYD+ RFGF   RASPRQ+D+++V GT
Sbjct: 42  LDDFINWGRSNSLWPLTFATSCCGIEFMALGAARYDMARFGFEVARASPRQADMIMVCGT 101

Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP 161
           +TNKMA  L+R+YDQMP+P+YV+++G CA  GG +  SY VV G D+I+PVD+Y+PGCPP
Sbjct: 102 ITNKMAPVLKRLYDQMPDPKYVVAVGGCAVSGGPFKKSYHVVNGVDKILPVDVYIPGCPP 161

Query: 162 TAEALIYGILLLQKKIR 178
             EA  YG++ LQ+K++
Sbjct: 162 RPEAFYYGMMQLQRKVK 178


>gi|330470216|ref|YP_004407959.1| NADH-quinone oxidoreductase subunit B [Verrucosispora maris
           AB-18-032]
 gi|328813187|gb|AEB47359.1| NADH-quinone oxidoreductase, B subunit [Verrucosispora maris
           AB-18-032]
          Length = 197

 Score =  168 bits (425), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 77/133 (57%), Positives = 102/133 (76%), Gaps = 1/133 (0%)

Query: 46  LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA-SPRQSDVMIVAGTLTN 104
           ++ W R  SL    FGLACCA+E +  SM R+D  R G  P A  PRQ+D+M+V+GT+T+
Sbjct: 14  VLNWGRRYSLWVFNFGLACCAIEFIATSMSRHDFMRLGVIPFAHGPRQADLMVVSGTVTD 73

Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164
           KMA A++R+YDQMPEP+YVIS G+C+N GG Y  SYSV +G D+++PVD+YVPGCPP  E
Sbjct: 74  KMAPAIKRLYDQMPEPKYVISFGACSNCGGPYWDSYSVTKGVDQLIPVDVYVPGCPPRPE 133

Query: 165 ALIYGILLLQKKI 177
           AL++GIL LQ+KI
Sbjct: 134 ALLHGILRLQEKI 146


>gi|297159540|gb|ADI09252.1| NADH dehydrogenase subunit NuoB2 [Streptomyces bingchenggensis
           BCW-1]
          Length = 214

 Score =  167 bits (424), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 78/135 (57%), Positives = 103/135 (76%), Gaps = 1/135 (0%)

Query: 46  LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS-PRQSDVMIVAGTLTN 104
           ++ W R  SL    FGLACCA+E + ASM R+D  R G  P A  PRQ+D+M+V+GT+T+
Sbjct: 38  VLNWGRRYSLWVFNFGLACCAIEFIAASMARHDFIRLGVIPFAPGPRQADLMVVSGTVTD 97

Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164
           KMA A++R+Y+QMPEP+YVIS G+C+N GG Y  SY+V +G D+I+PVD+YVPGCPP  E
Sbjct: 98  KMAPAVKRLYEQMPEPKYVISFGACSNCGGPYWDSYAVTKGVDQIIPVDVYVPGCPPRPE 157

Query: 165 ALIYGILLLQKKIRR 179
           AL+ GIL LQ+KI R
Sbjct: 158 ALLQGILKLQEKIAR 172


>gi|295837078|ref|ZP_06824011.1| proton-translocating NADH-quinone oxidoreductase, B subunit
           [Streptomyces sp. SPB74]
 gi|197697185|gb|EDY44118.1| proton-translocating NADH-quinone oxidoreductase, B subunit
           [Streptomyces sp. SPB74]
          Length = 204

 Score =  167 bits (424), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 78/135 (57%), Positives = 103/135 (76%), Gaps = 1/135 (0%)

Query: 46  LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS-PRQSDVMIVAGTLTN 104
           ++ W R  SL    FGLACCA+E + ASM R+D  R G  P A  PRQ+D+M+V+GT+T+
Sbjct: 42  VLNWGRRYSLWVFNFGLACCAIEFIAASMSRHDFIRLGVIPFAPGPRQADLMVVSGTVTD 101

Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164
           KMA A++R+Y+QMPEP+YVIS G+C+N GG Y  SYSV +G D+I+PVD+YVPGCPP  E
Sbjct: 102 KMAPAVKRLYEQMPEPKYVISFGACSNCGGPYWDSYSVTKGVDQIIPVDVYVPGCPPRPE 161

Query: 165 ALIYGILLLQKKIRR 179
           AL+ GIL LQ+KI +
Sbjct: 162 ALLQGILKLQEKIAK 176


>gi|78043958|ref|YP_360256.1| NADH dehydrogenase subunit B [Carboxydothermus hydrogenoformans
           Z-2901]
 gi|123576172|sp|Q3AC78|NUOB_CARHZ RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|77996073|gb|ABB14972.1| proton-translocating NADH-quinone oxidoreductase, B subunit
           [Carboxydothermus hydrogenoformans Z-2901]
          Length = 166

 Score =  167 bits (424), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 80/156 (51%), Positives = 108/156 (69%), Gaps = 1/156 (0%)

Query: 30  SSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RA 88
             ++  K   +T++D +  WAR  SL  +TFGLACCA+E+M A  P+YD  RFG+   R 
Sbjct: 10  EEKLIGKNVFLTTLDAVFNWARGNSLWPLTFGLACCAIEVMAAGGPKYDFSRFGYEVWRP 69

Query: 89  SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 148
           SPR +D+MIVAGT+T KM   + R+Y+QM EP+YVI+MGSCA  GG +  SY VV G + 
Sbjct: 70  SPRHADLMIVAGTITKKMQPLVLRLYEQMAEPKYVIAMGSCAISGGPFVDSYHVVPGANT 129

Query: 149 IVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
            +PVD+Y+PGCPP  EAL+YG L L++KI+    VK
Sbjct: 130 FLPVDVYIPGCPPRPEALLYGWLELKRKIQNPRVVK 165


>gi|288928299|ref|ZP_06422146.1| NADH dehydrogenase I, B/C/D subunit [Prevotella sp. oral taxon 317
           str. F0108]
 gi|288331133|gb|EFC69717.1| NADH dehydrogenase I, B/C/D subunit [Prevotella sp. oral taxon 317
           str. F0108]
          Length = 207

 Score =  167 bits (424), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 75/161 (46%), Positives = 111/161 (68%), Gaps = 3/161 (1%)

Query: 21  KVDADFSRISSEITHKGF--LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78
           K +    +I +E+   G   +V S+DQ + W R+ SL  +TF  +CC +E M     RYD
Sbjct: 17  KDNDTLEQIMNELHEGGVNVVVGSLDQAINWGRSNSLWSLTFATSCCGIEFMSVGCARYD 76

Query: 79  LERFGF-APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137
             RFGF   R SPRQ+D+++ AGT+TNKMA  ++R+YD+M +P+YVI++G CA  GG + 
Sbjct: 77  FARFGFEVTRNSPRQADLIMCAGTITNKMAPVMKRLYDEMADPKYVIAVGGCAISGGPFK 136

Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
            SY VVRG + IVPVD+++PGCPP  EA++YG++ LQ+K++
Sbjct: 137 SSYHVVRGIEEIVPVDVFIPGCPPRPEAILYGMMQLQRKVK 177


>gi|260912210|ref|ZP_05918762.1| NADH dehydrogenase I [Prevotella sp. oral taxon 472 str. F0295]
 gi|260633644|gb|EEX51782.1| NADH dehydrogenase I [Prevotella sp. oral taxon 472 str. F0295]
          Length = 207

 Score =  167 bits (424), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 75/161 (46%), Positives = 111/161 (68%), Gaps = 3/161 (1%)

Query: 21  KVDADFSRISSEITHKGF--LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78
           K +    +I +E+   G   +V S+DQ + W R+ SL  +TF  +CC +E M     RYD
Sbjct: 17  KDNDTLEQIMNELHEGGVNVVVGSLDQAINWGRSNSLWSLTFATSCCGIEFMSVGCARYD 76

Query: 79  LERFGF-APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137
             RFGF   R SPRQ+D+++ AGT+TNKMA  ++R+YD+M +P+YVI++G CA  GG + 
Sbjct: 77  FARFGFEVTRNSPRQADLIMCAGTITNKMAPVMKRLYDEMADPKYVIAVGGCAISGGPFK 136

Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
            SY VVRG + IVPVD+++PGCPP  EA++YG++ LQ+K++
Sbjct: 137 SSYHVVRGIEEIVPVDVFIPGCPPRPEAILYGMMQLQRKVK 177


>gi|226227067|ref|YP_002761173.1| NADH-quinone oxidoreductase chain B [Gemmatimonas aurantiaca T-27]
 gi|226090258|dbj|BAH38703.1| NADH-quinone oxidoreductase chain B [Gemmatimonas aurantiaca T-27]
          Length = 212

 Score =  167 bits (424), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 81/167 (48%), Positives = 114/167 (68%), Gaps = 10/167 (5%)

Query: 12  SGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQ 71
            G+ + ++  VDA          H G++ T +D LV W R GSL  M FG ACCA+E M 
Sbjct: 8   EGRGASAITHVDAG--------GHDGWITTRLDFLVNWGRAGSLWPMPFGTACCAIEFMA 59

Query: 72  ASMPRYDLERFGFAPRA-SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCA 130
            +  R+DL RFG    + SPRQ+DV++ AG +  K+A  LRR+Y QMP+P++VISMG+CA
Sbjct: 60  TAASRFDLSRFGMERLSYSPRQADVLLCAGRVPLKLAPVLRRIYQQMPQPKWVISMGACA 119

Query: 131 NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
           + GG +  +Y+VV+G D I+PVD+YVPGCPP  EAL++ I++LQKK+
Sbjct: 120 STGGMFD-NYAVVQGIDTIIPVDVYVPGCPPRPEALMHAIIMLQKKV 165


>gi|312139310|ref|YP_004006646.1| NADH dehydrogenase (quinone) chain b nuob [Rhodococcus equi 103S]
 gi|325673384|ref|ZP_08153075.1| NADH-quinone oxidoreductase subunit B [Rhodococcus equi ATCC 33707]
 gi|311888649|emb|CBH47961.1| NADH dehydrogenase (quinone) chain B NuoB [Rhodococcus equi 103S]
 gi|325555405|gb|EGD25076.1| NADH-quinone oxidoreductase subunit B [Rhodococcus equi ATCC 33707]
          Length = 190

 Score =  167 bits (424), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 82/149 (55%), Positives = 110/149 (73%), Gaps = 2/149 (1%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APRAS 89
            E    GFL+++V+ +  +AR GSL   TFGLACCA+EMM  +  RYDL RFG  A RAS
Sbjct: 4   EEKVPGGFLLSTVETVAGYARKGSLWPATFGLACCAIEMMATTSGRYDLARFGMEAFRAS 63

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQ+D+MIVAG ++ KMA  LR+VYDQM EP++V++MG CA+ GG ++ +Y++V+G D +
Sbjct: 64  PRQADLMIVAGRVSQKMAPVLRQVYDQMVEPKWVLAMGVCASSGGMFN-NYAIVQGVDHV 122

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           VPVDIY+PGCPP  E L+  IL L  KI+
Sbjct: 123 VPVDIYLPGCPPRPEMLLDAILALHAKIQ 151


>gi|253698814|ref|YP_003020003.1| trifunctional NADH dehydrogenase I subunit B/C/D [Geobacter sp.
           M21]
 gi|251773664|gb|ACT16245.1| NADH dehydrogenase I, D subunit [Geobacter sp. M21]
          Length = 794

 Score =  167 bits (424), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 78/144 (54%), Positives = 106/144 (73%), Gaps = 2/144 (1%)

Query: 36  KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSD 94
           +  L  S+D ++ W R  SL  M FGL+CC VEMM +   RYD+ RFG    R +PR+SD
Sbjct: 11  ENVLFASLDDMINWGRANSLWPMFFGLSCCFVEMMTSFTSRYDVSRFGAEVLRGTPRESD 70

Query: 95  VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154
           +M++AGT+  KMA ++ R+YDQM EP++VISMGSCAN GG Y   YSVV+G D+I+PVD+
Sbjct: 71  LMVIAGTVFKKMAPSILRLYDQMAEPKWVISMGSCANSGGMYDV-YSVVQGVDQILPVDL 129

Query: 155 YVPGCPPTAEALIYGILLLQKKIR 178
           Y+PGCPP  E+ + G++LLQ+KIR
Sbjct: 130 YIPGCPPRPESFLEGLMLLQQKIR 153


>gi|318056637|ref|ZP_07975360.1| NADH dehydrogenase I chain B [Streptomyces sp. SA3_actG]
 gi|318080916|ref|ZP_07988248.1| NADH dehydrogenase I chain B [Streptomyces sp. SA3_actF]
          Length = 204

 Score =  167 bits (424), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 78/133 (58%), Positives = 102/133 (76%), Gaps = 1/133 (0%)

Query: 46  LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS-PRQSDVMIVAGTLTN 104
           ++ W R  SL    FGLACCA+E + ASM R+D  R G  P A  PRQ+D+M+V+GT+T+
Sbjct: 42  VLNWGRRYSLWVFNFGLACCAIEFIAASMSRHDFIRLGVIPFAPGPRQADLMVVSGTVTD 101

Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164
           KMA A++R+Y+QMPEP+YVIS G+C+N GG Y  SYSV +G D+I+PVD+YVPGCPP  E
Sbjct: 102 KMAPAVKRLYEQMPEPKYVISFGACSNCGGPYWDSYSVTKGVDQIIPVDVYVPGCPPRPE 161

Query: 165 ALIYGILLLQKKI 177
           AL+ GIL LQ+KI
Sbjct: 162 ALLQGILKLQEKI 174


>gi|269955278|ref|YP_003325067.1| NADH-quinone oxidoreductase subunit B [Xylanimonas cellulosilytica
           DSM 15894]
 gi|269303959|gb|ACZ29509.1| NADH-quinone oxidoreductase, B subunit [Xylanimonas cellulosilytica
           DSM 15894]
          Length = 183

 Score =  167 bits (423), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 81/147 (55%), Positives = 108/147 (73%), Gaps = 2/147 (1%)

Query: 32  EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASP 90
           E    GFL+T+++ L  + R  SL  +TFGLACCA+EMM A   R+DL RFG    RASP
Sbjct: 4   EEAPSGFLLTTIEDLAGYLRKASLWPVTFGLACCAIEMMAAGASRFDLSRFGMEVFRASP 63

Query: 91  RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150
           RQ+D+MIVAG ++ KMA  +R+VYDQM EP++V+SMG CA+ GG ++ +Y++V+G D IV
Sbjct: 64  RQADLMIVAGRVSQKMAPVVRQVYDQMSEPKWVLSMGVCASSGGMFN-NYAIVQGVDHIV 122

Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKI 177
           PVDIY+PGCPP  E LI  IL L ++I
Sbjct: 123 PVDIYLPGCPPRPEMLINAILALHQQI 149


>gi|78221378|ref|YP_383125.1| trifunctional NADH dehydrogenase I subunit B/C/D [Geobacter
           metallireducens GS-15]
 gi|123572941|sp|Q39ZC4|NUBCD_GEOMG RecName: Full=NADH-quinone oxidoreductase subunit B/C/D; AltName:
           Full=NADH dehydrogenase I subunit B/C/D; AltName:
           Full=NDH-1 subunit B/C/D
 gi|78192633|gb|ABB30400.1| NADH dehydrogenase subunit D / NADH dehydrogenase subunit C / NADH
           dehydrogenase subunit B [Geobacter metallireducens
           GS-15]
          Length = 791

 Score =  167 bits (423), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 77/145 (53%), Positives = 108/145 (74%), Gaps = 2/145 (1%)

Query: 36  KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSD 94
           +  ++T +D L+ W R  SL  M FGL+CC VEMM +   RYD+ RFG    R +PR++D
Sbjct: 8   QNIVLTRLDDLINWGRANSLWPMFFGLSCCFVEMMTSFTSRYDISRFGAEVLRGTPREAD 67

Query: 95  VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154
           +M++AGT+  KMA ++ R+Y+QM EP++VISMGSCAN GG Y   YSVV+G ++I+PVD+
Sbjct: 68  LMVIAGTVFKKMAPSILRLYEQMAEPKWVISMGSCANSGGMYDV-YSVVQGVNQIIPVDV 126

Query: 155 YVPGCPPTAEALIYGILLLQKKIRR 179
           +VPGCPP  EA + G++LLQ+KIRR
Sbjct: 127 HVPGCPPRPEAFLQGVMLLQEKIRR 151


>gi|294630833|ref|ZP_06709393.1| NADH dehydrogenase I, 20 kDa subunit [Streptomyces sp. e14]
 gi|292834166|gb|EFF92515.1| NADH dehydrogenase I, 20 kDa subunit [Streptomyces sp. e14]
          Length = 236

 Score =  167 bits (423), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 78/133 (58%), Positives = 102/133 (76%), Gaps = 1/133 (0%)

Query: 46  LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS-PRQSDVMIVAGTLTN 104
           ++ W R  SL    FGLACCA+E + ASM R+D  R G  P A  PRQ+D+M+V+GT+T+
Sbjct: 51  VLNWGRRYSLWVFNFGLACCAIEFIAASMARHDFIRLGVIPFAPGPRQADLMVVSGTVTD 110

Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164
           KMA A++R+Y+QMPEP+YVIS G+C+N GG Y  SYSV +G D+I+PVD+YVPGCPP  E
Sbjct: 111 KMAPAVKRLYEQMPEPKYVISFGACSNCGGPYWDSYSVTKGVDQIIPVDVYVPGCPPRPE 170

Query: 165 ALIYGILLLQKKI 177
           AL+ GIL LQ+KI
Sbjct: 171 ALLQGILKLQEKI 183


>gi|156741308|ref|YP_001431437.1| NADH dehydrogenase subunit B [Roseiflexus castenholzii DSM 13941]
 gi|238065017|sp|A7NIW1|NUOB1_ROSCS RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName:
           Full=NADH dehydrogenase I subunit B 1; AltName:
           Full=NDH-1 subunit B 1
 gi|156232636|gb|ABU57419.1| NADH-quinone oxidoreductase, B subunit [Roseiflexus castenholzii
           DSM 13941]
          Length = 167

 Score =  167 bits (423), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 79/153 (51%), Positives = 111/153 (72%), Gaps = 2/153 (1%)

Query: 29  ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PR 87
           I  +    G +  S++Q+V W+R+ ++  + FGLACCA+EMM A    YDL RFG    R
Sbjct: 3   IEQKAGDMGIVTASLEQVVNWSRSNAMWPLLFGLACCAIEMMGAQGANYDLSRFGMEINR 62

Query: 88  ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCD 147
           ASPRQ+D+MIVAG ++ KMA  +RR+YDQM +P++VI+MG CA  GG ++ +Y++V+G D
Sbjct: 63  ASPRQADLMIVAGRVSRKMAPVVRRLYDQMADPKWVIAMGDCAACGGVFN-NYAIVQGVD 121

Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
            IVPVD+YV GCPP  EALI GI+ L +K+RR+
Sbjct: 122 EIVPVDVYVAGCPPRPEALIDGIIHLHEKVRRM 154


>gi|148657777|ref|YP_001277982.1| NADH dehydrogenase subunit B [Roseiflexus sp. RS-1]
 gi|238065039|sp|A5UZH9|NUOB2_ROSS1 RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName:
           Full=NADH dehydrogenase I subunit B 2; AltName:
           Full=NDH-1 subunit B 2
 gi|148569887|gb|ABQ92032.1| NADH-quinone oxidoreductase, B subunit [Roseiflexus sp. RS-1]
          Length = 167

 Score =  167 bits (423), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 79/153 (51%), Positives = 111/153 (72%), Gaps = 2/153 (1%)

Query: 29  ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PR 87
           I  +    G +  S++QLV W+R+ ++  + FGLACCA+EMM A    YDL RFG    R
Sbjct: 3   IEQKAGDMGIVTASLEQLVNWSRSSAMWPLLFGLACCAIEMMGAQGANYDLSRFGMEINR 62

Query: 88  ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCD 147
           ASPRQ+D+MIVAG ++ KMA  +RR+YDQM +P++VI+MG CA  GG ++ +Y++V+G D
Sbjct: 63  ASPRQADLMIVAGRVSRKMAPVVRRLYDQMADPKWVIAMGDCAACGGVFN-NYAIVQGVD 121

Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
            IVPVD+YV GCPP  EALI GI+ L +K++R+
Sbjct: 122 EIVPVDVYVAGCPPRPEALIDGIIHLHEKVKRM 154


>gi|302543406|ref|ZP_07295748.1| NADH dehydrogenase I, 20 kDa subunit [Streptomyces hygroscopicus
           ATCC 53653]
 gi|302461024|gb|EFL24117.1| NADH dehydrogenase I, 20 kDa subunit [Streptomyces himastatinicus
           ATCC 53653]
          Length = 241

 Score =  167 bits (423), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 78/135 (57%), Positives = 103/135 (76%), Gaps = 1/135 (0%)

Query: 46  LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS-PRQSDVMIVAGTLTN 104
           ++ W R  SL    FGLACCA+E + ASM R+D  R G  P A  PRQ+D+M+V+GT+T+
Sbjct: 73  VLNWGRRYSLWVFNFGLACCAIEFIAASMARHDFIRLGVIPFAPGPRQADLMVVSGTVTD 132

Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164
           KMA A++R+Y+QMPEP+YVIS G+C+N GG Y  SY+V +G D+I+PVD+YVPGCPP  E
Sbjct: 133 KMAPAVKRLYEQMPEPKYVISFGACSNCGGPYWDSYAVTKGVDQIIPVDVYVPGCPPRPE 192

Query: 165 ALIYGILLLQKKIRR 179
           AL+ GIL LQ+KI R
Sbjct: 193 ALLQGILKLQEKIAR 207


>gi|302870016|ref|YP_003838653.1| NADH-quinone oxidoreductase subunit B [Micromonospora aurantiaca
           ATCC 27029]
 gi|315503712|ref|YP_004082599.1| NADH-quinone oxidoreductase, b subunit [Micromonospora sp. L5]
 gi|302572875|gb|ADL49077.1| NADH-quinone oxidoreductase, B subunit [Micromonospora aurantiaca
           ATCC 27029]
 gi|315410331|gb|ADU08448.1| NADH-quinone oxidoreductase, B subunit [Micromonospora sp. L5]
          Length = 186

 Score =  167 bits (423), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 77/133 (57%), Positives = 102/133 (76%), Gaps = 1/133 (0%)

Query: 46  LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA-SPRQSDVMIVAGTLTN 104
           ++ W R  SL    FGLACCA+E +  SM R+D  R G  P A  PRQ+D+M+V+GT+T+
Sbjct: 14  VLNWGRRYSLWVFNFGLACCAIEFIATSMGRHDFMRLGVIPFAHGPRQADLMVVSGTVTD 73

Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164
           KMA A++R+YDQMPEP+YVIS G+C+N GG Y  SYSV +G D+++PVD+YVPGCPP  E
Sbjct: 74  KMAPAVKRLYDQMPEPKYVISFGACSNCGGPYWDSYSVTKGVDQLIPVDVYVPGCPPRPE 133

Query: 165 ALIYGILLLQKKI 177
           AL++GIL LQ+KI
Sbjct: 134 ALLHGILRLQEKI 146


>gi|296268274|ref|YP_003650906.1| NADH-quinone oxidoreductase subunit B [Thermobispora bispora DSM
           43833]
 gi|296091061|gb|ADG87013.1| NADH-quinone oxidoreductase, B subunit [Thermobispora bispora DSM
           43833]
          Length = 183

 Score =  167 bits (423), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 78/145 (53%), Positives = 108/145 (74%), Gaps = 2/145 (1%)

Query: 37  GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQSDV 95
           GFL+T+V++ V WAR  S+   TFGLACCA+E+M    P++DL RFG     A+PRQ+D+
Sbjct: 10  GFLLTTVEKAVGWARKNSVWPATFGLACCAIELMATGGPKHDLARFGMERASATPRQADL 69

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
           MIVAG ++ KMA  +RR+YDQM EP++VI+MG CA+ GG ++ +Y+VV+G D IVPVD+Y
Sbjct: 70  MIVAGRVSQKMAPVVRRIYDQMAEPKWVIAMGVCASSGGMFN-NYAVVQGVDHIVPVDVY 128

Query: 156 VPGCPPTAEALIYGILLLQKKIRRV 180
           +PGCPP  E LI  I+ L  KI+ +
Sbjct: 129 LPGCPPRPEMLIDAIVKLHDKIQNM 153


>gi|218528061|sp|Q67P21|NUOB1_SYMTH RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName:
           Full=NADH dehydrogenase I subunit B 1; AltName:
           Full=NDH-1 subunit B 1
          Length = 166

 Score =  167 bits (423), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 76/147 (51%), Positives = 113/147 (76%), Gaps = 3/147 (2%)

Query: 35  HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQ-ASMPRYDLERFGF-APRASPRQ 92
             GF+ T+VD  + WA++ S+  +TFGLACCA+EMM  AS PRYD+ RFG  A RASPRQ
Sbjct: 10  QGGFVTTTVDSFLRWAQSNSIWPLTFGLACCAIEMMNLASGPRYDIARFGSEAFRASPRQ 69

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           +D++ ++G ++NKMA  ++RVY QM EP++V++ G+CA+ GG +  +Y++++G D ++PV
Sbjct: 70  ADLIFISGRVSNKMAPVIKRVYSQMLEPKWVVAFGACASSGGIFD-NYAIMQGVDNLLPV 128

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179
           DIYVPGCPPT EA+IY +  L+ +IR+
Sbjct: 129 DIYVPGCPPTPEAVIYAVQKLRDRIRK 155


>gi|302521251|ref|ZP_07273593.1| NADH dehydrogenase subunit NuoB2 [Streptomyces sp. SPB78]
 gi|302430146|gb|EFL01962.1| NADH dehydrogenase subunit NuoB2 [Streptomyces sp. SPB78]
          Length = 243

 Score =  167 bits (422), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 78/133 (58%), Positives = 102/133 (76%), Gaps = 1/133 (0%)

Query: 46  LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS-PRQSDVMIVAGTLTN 104
           ++ W R  SL    FGLACCA+E + ASM R+D  R G  P A  PRQ+D+M+V+GT+T+
Sbjct: 81  VLNWGRRYSLWVFNFGLACCAIEFIAASMSRHDFIRLGVIPFAPGPRQADLMVVSGTVTD 140

Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164
           KMA A++R+Y+QMPEP+YVIS G+C+N GG Y  SYSV +G D+I+PVD+YVPGCPP  E
Sbjct: 141 KMAPAVKRLYEQMPEPKYVISFGACSNCGGPYWDSYSVTKGVDQIIPVDVYVPGCPPRPE 200

Query: 165 ALIYGILLLQKKI 177
           AL+ GIL LQ+KI
Sbjct: 201 ALLQGILKLQEKI 213


>gi|111220500|ref|YP_711294.1| NADH dehydrogenase subunit B [Frankia alni ACN14a]
 gi|111148032|emb|CAJ59698.1| NADH dehydrogenase subunit [Frankia alni ACN14a]
          Length = 271

 Score =  167 bits (422), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 79/141 (56%), Positives = 105/141 (74%), Gaps = 2/141 (1%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVM 96
            L+ SV++L  W+R  SL   TFGLACCA+EMM     RYDL RFG    RASPRQ+D+M
Sbjct: 1   MLLASVEKLANWSRRSSLWPATFGLACCAIEMMSTGAGRYDLSRFGMEVFRASPRQADLM 60

Query: 97  IVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV 156
           IVAG ++ KMA  LR++YDQMPEP++V+SMG CA+ GG ++ +Y++V+G D IVPVD+Y+
Sbjct: 61  IVAGRVSQKMAPVLRQIYDQMPEPKWVLSMGVCASSGGMFN-NYAIVQGVDHIVPVDMYL 119

Query: 157 PGCPPTAEALIYGILLLQKKI 177
           PGCPP  E L+  I+ L +KI
Sbjct: 120 PGCPPRPEMLMDAIIKLHEKI 140


>gi|222054362|ref|YP_002536724.1| NADH dehydrogenase I, D subunit [Geobacter sp. FRC-32]
 gi|221563651|gb|ACM19623.1| NADH dehydrogenase I, D subunit [Geobacter sp. FRC-32]
          Length = 792

 Score =  167 bits (422), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 79/141 (56%), Positives = 106/141 (75%), Gaps = 2/141 (1%)

Query: 39  LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMI 97
           L+T++D L+ W R  SL  M FGL+CC VEMM +   RYD+ RFG    R +PR++D+M+
Sbjct: 12  LLTNLDDLINWGRANSLWPMFFGLSCCFVEMMTSFTSRYDISRFGAEVLRGTPREADLMV 71

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           +AGT+  KMA ++  +Y+QM EPR+VISMGSCAN GG Y   YSVV+G ++I+PVD+YVP
Sbjct: 72  IAGTVFKKMAPSILTLYEQMAEPRWVISMGSCANSGGMYDV-YSVVQGVNQILPVDVYVP 130

Query: 158 GCPPTAEALIYGILLLQKKIR 178
           GCPP  EA + G+LLLQ+KIR
Sbjct: 131 GCPPRPEAFMQGLLLLQEKIR 151


>gi|320529348|ref|ZP_08030436.1| NADH dehydrogenase subunit B [Selenomonas artemidis F0399]
 gi|320138314|gb|EFW30208.1| NADH dehydrogenase subunit B [Selenomonas artemidis F0399]
          Length = 178

 Score =  167 bits (422), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 80/152 (52%), Positives = 108/152 (71%), Gaps = 2/152 (1%)

Query: 27  SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP 86
            R+   + H  F+V  +DQL  WA   S+  ++ GLACCA+EMM  +  R+DL RFG+  
Sbjct: 5   ERVPESLRHNVFVV-KIDQLFRWAHASSIWPLSSGLACCAIEMMSTATARFDLARFGYEV 63

Query: 87  -RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRG 145
            R  PRQ+D++IVAGTLT KMA  + R+Y+QMPEP+YVI+MG+C   GG +  SYSVV G
Sbjct: 64  FRPCPRQADLLIVAGTLTWKMAEPIVRLYEQMPEPKYVIAMGACTIAGGPFADSYSVVPG 123

Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
            D I+PVD+Y+PGCPP  EAL+ G+L L++KI
Sbjct: 124 IDDILPVDVYIPGCPPRPEALMDGMLKLREKI 155


>gi|149034569|gb|EDL89306.1| NADH dehydrogenase (ubiquinone) Fe-S protein 7, isoform CRA_b
           [Rattus norvegicus]
          Length = 94

 Score =  167 bits (422), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 78/89 (87%), Positives = 84/89 (94%)

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
           MIVAGTLTNKMA ALR+VYDQMPEPRYV+SMGSCANGGGYYHYSYSVVRGCDRIVPVDIY
Sbjct: 1   MIVAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 60

Query: 156 VPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           VPGCPPTAEAL+YGIL LQ+KI+R   +K
Sbjct: 61  VPGCPPTAEALLYGILQLQRKIKREQKLK 89


>gi|168705443|ref|ZP_02737720.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit [Gemmata
           obscuriglobus UQM 2246]
          Length = 203

 Score =  166 bits (421), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 84/148 (56%), Positives = 113/148 (76%), Gaps = 2/148 (1%)

Query: 35  HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APRASPRQS 93
             GF+ T+++  + WAR  SL  MTFGLACCA+EMM    PRYD++RFG  A RA+PRQ+
Sbjct: 9   RDGFVATNLEHAINWARESSLWPMTFGLACCAIEMMATGAPRYDIDRFGAGAFRATPRQA 68

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCA-NGGGYYHYSYSVVRGCDRIVPV 152
           D+MIVAGT+  KMA  +RR+Y+QMP+P++VI+MG+C   GG YY Y Y+V +G D IVPV
Sbjct: 69  DLMIVAGTVNLKMAERVRRLYNQMPDPKFVIAMGACTCGGGPYYKYGYNVAKGVDLIVPV 128

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRV 180
           D+YVPGCPP  EAL+ G++ +Q KIR++
Sbjct: 129 DVYVPGCPPRPEALLEGLMRVQDKIRKM 156


>gi|111074959|gb|ABH04821.1| NAD(P)H-quinone oxidoreductase 20 kDa subunit [Heliobacillus
           mobilis]
          Length = 175

 Score =  166 bits (421), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 76/149 (51%), Positives = 111/149 (74%), Gaps = 1/149 (0%)

Query: 32  EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASP 90
           E+  K  ++TS++ +  WAR  S   ++ GLACCA+EMM ++ PR+D+ RFG+   R S 
Sbjct: 17  ELVQKNIIMTSLESVFNWARGNSFWPLSSGLACCAIEMMASAGPRFDIARFGYEVFRPSV 76

Query: 91  RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150
           RQ+D +I+AGT+T KMA AL R+Y+QMPEP+++++MGSCA  GG +  SY+VV G D+I+
Sbjct: 77  RQADCIIIAGTVTWKMAPALVRLYEQMPEPKWILAMGSCACTGGPFVDSYAVVPGVDKIL 136

Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           PVD+Y+PGCPP  EALI G L L++K++ 
Sbjct: 137 PVDVYIPGCPPRPEALIDGFLKLKEKVQN 165


>gi|330997245|ref|ZP_08321098.1| NADH-quinone oxidoreductase, B subunit [Paraprevotella xylaniphila
           YIT 11841]
 gi|329571040|gb|EGG52747.1| NADH-quinone oxidoreductase, B subunit [Paraprevotella xylaniphila
           YIT 11841]
          Length = 204

 Score =  166 bits (421), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 72/143 (50%), Positives = 102/143 (71%), Gaps = 1/143 (0%)

Query: 37  GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQSDV 95
           G ++ ++D L+ W R+ SL  +TFG +CCA+E M     RYD+ RFGF   R SPRQ+D+
Sbjct: 37  GIVLGTLDDLINWGRSNSLWSLTFGTSCCAIEFMALGAARYDMARFGFEVTRNSPRQADM 96

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
           ++V GT+T +MA  L+R+YDQM EP+YV+++G C   GG +  SY VV G D I+PVD+Y
Sbjct: 97  IMVLGTITYRMAPVLKRLYDQMAEPKYVVAVGGCTISGGPFRKSYHVVNGIDEIIPVDVY 156

Query: 156 VPGCPPTAEALIYGILLLQKKIR 178
           +PGCPP  EA  YG++ LQ+KI+
Sbjct: 157 IPGCPPRPEAFFYGMMQLQRKIK 179


>gi|329938298|ref|ZP_08287749.1| NADH dehydrogenase subunit NuoB2 [Streptomyces griseoaurantiacus
           M045]
 gi|329302787|gb|EGG46677.1| NADH dehydrogenase subunit NuoB2 [Streptomyces griseoaurantiacus
           M045]
          Length = 308

 Score =  166 bits (421), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 77/135 (57%), Positives = 103/135 (76%), Gaps = 1/135 (0%)

Query: 46  LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA-SPRQSDVMIVAGTLTN 104
           ++ W R  SL    FGLACCA+E + ASM R+D  R G  P A  PRQ+D+M+V+GT+T+
Sbjct: 75  VLNWGRRYSLWVFNFGLACCAIEFIAASMSRHDFMRLGVIPFAPGPRQADLMVVSGTVTD 134

Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164
           KMA A++R+Y+QMPEP+YVIS G+C+N GG Y  SY+V +G D+I+PVD+YVPGCPP  E
Sbjct: 135 KMAPAVKRLYEQMPEPKYVISFGACSNCGGPYWDSYAVTKGVDQIIPVDVYVPGCPPRPE 194

Query: 165 ALIYGILLLQKKIRR 179
           AL+ GI+ LQ+KI R
Sbjct: 195 ALLQGIIKLQEKIAR 209


>gi|169629221|ref|YP_001702870.1| NADH dehydrogenase subunit B [Mycobacterium abscessus ATCC 19977]
 gi|238065175|sp|B1MPG5|NUOB_MYCA9 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|169241188|emb|CAM62216.1| NADH-quinone oxidoreductase, B subunit NuoB [Mycobacterium
           abscessus]
          Length = 184

 Score =  166 bits (421), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 76/142 (53%), Positives = 108/142 (76%), Gaps = 2/142 (1%)

Query: 37  GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95
           GFL+++V+ L  + R GSL   TFGLACCA+EMM  + PR+D+ RFG     A+PRQ+D+
Sbjct: 10  GFLLSTVETLAGYVRKGSLWPATFGLACCAIEMMSTAGPRFDIARFGMERFSATPRQADL 69

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
           MIVAG ++ KMA  LR++YDQM EP++V++MG CA+ GG ++ +Y++V+G D +VPVDIY
Sbjct: 70  MIVAGRVSQKMAPVLRQIYDQMAEPKWVLAMGVCASSGGMFN-NYAIVQGVDHVVPVDIY 128

Query: 156 VPGCPPTAEALIYGILLLQKKI 177
           +PGCPP  E L++ IL L +KI
Sbjct: 129 LPGCPPRPEMLLHAILKLHEKI 150


>gi|308275204|emb|CBX31801.1| NADH-quinone oxidoreductase subunit B 2 [uncultured
           Desulfobacterium sp.]
          Length = 183

 Score =  166 bits (421), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 77/139 (55%), Positives = 102/139 (73%), Gaps = 2/139 (1%)

Query: 43  VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL 102
           V  L+  AR  SL  +TFG+ACCA+EMM A M R+DL+RFG   RASPRQSDVM+VAGT+
Sbjct: 27  VQNLLNLARVNSLWPITFGIACCAIEMMAAGMARFDLDRFGTIFRASPRQSDVMVVAGTI 86

Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS--YSVVRGCDRIVPVDIYVPGCP 160
           + K+   +R +YDQMP P++V++MG+CA  GG + Y   Y++V G D+I+PVDIY+PGCP
Sbjct: 87  SKKLVPTIRTLYDQMPGPKWVMAMGNCAISGGPFAYDGQYAIVNGTDKIIPVDIYIPGCP 146

Query: 161 PTAEALIYGILLLQKKIRR 179
           P  EA I G+L LQ  I +
Sbjct: 147 PRPEAFIQGLLKLQTLISK 165


>gi|313895909|ref|ZP_07829463.1| NADH-quinone oxidoreductase, B subunit [Selenomonas sp. oral taxon
           137 str. F0430]
 gi|312975334|gb|EFR40795.1| NADH-quinone oxidoreductase, B subunit [Selenomonas sp. oral taxon
           137 str. F0430]
          Length = 178

 Score =  166 bits (421), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 80/152 (52%), Positives = 108/152 (71%), Gaps = 2/152 (1%)

Query: 27  SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP 86
            R+   + H  F+V  +DQL  WA   S+  ++ GLACCA+EMM  +  R+DL RFG+  
Sbjct: 5   ERVPESLRHNVFVV-KIDQLFRWAHASSIWPLSSGLACCAIEMMSTATARFDLARFGYEV 63

Query: 87  -RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRG 145
            R  PRQ+D++IVAGTLT KMA  + R+Y+QMPEP+YVI+MG+C   GG +  SYSVV G
Sbjct: 64  FRPCPRQADLLIVAGTLTWKMAEPIVRLYEQMPEPKYVIAMGACTIAGGPFADSYSVVPG 123

Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
            D I+PVD+Y+PGCPP  EAL+ G+L L++KI
Sbjct: 124 IDDILPVDVYIPGCPPRPEALMDGMLKLREKI 155


>gi|254674105|emb|CBA09889.1| NADH dehydrogenase I chain B [Neisseria meningitidis alpha275]
          Length = 111

 Score =  166 bits (421), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 74/93 (79%), Positives = 86/93 (92%)

Query: 91  RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150
           RQ+D+MIVAGTLTNKMA ALRRVYDQ+ EPR+V+SMGSCANGGGYYHYSYSVVRG DR+V
Sbjct: 15  RQADLMIVAGTLTNKMAPALRRVYDQLAEPRWVLSMGSCANGGGYYHYSYSVVRGADRVV 74

Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           PVD+YVPGCPPTAEALIYG++ LQ+KI+R   +
Sbjct: 75  PVDVYVPGCPPTAEALIYGLIQLQQKIKRTSTI 107


>gi|111022873|ref|YP_705845.1| NADH dehydrogenase subunit B [Rhodococcus jostii RHA1]
 gi|122955232|sp|Q0S449|NUOB_RHOSR RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|110822403|gb|ABG97687.1| probable NADH dehydrogenase subunit B [Rhodococcus jostii RHA1]
          Length = 184

 Score =  166 bits (421), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 80/151 (52%), Positives = 112/151 (74%), Gaps = 2/151 (1%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APRAS 89
            E    GFL+T+V+ L  + R GSL   +FGLACCA+EMM  +  R+D+ RFG  A RAS
Sbjct: 4   EEKLPSGFLLTTVEGLAGYVRKGSLWPASFGLACCAIEMMATAGGRFDIARFGMEAFRAS 63

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQ+D+MIVAG ++ KMA  LR++YDQM EP++V++MG CA+ GG ++ +Y++V+G D I
Sbjct: 64  PRQADLMIVAGRVSQKMAPVLRQIYDQMVEPKWVLAMGVCASSGGMFN-NYAIVQGVDHI 122

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           VPVDIY+PGCPP  E L+  IL L +KI+++
Sbjct: 123 VPVDIYLPGCPPRPEMLLNAILTLHEKIQQM 153


>gi|296130550|ref|YP_003637800.1| NADH-quinone oxidoreductase, B subunit [Cellulomonas flavigena DSM
           20109]
 gi|296022365|gb|ADG75601.1| NADH-quinone oxidoreductase, B subunit [Cellulomonas flavigena DSM
           20109]
          Length = 183

 Score =  166 bits (420), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 81/148 (54%), Positives = 109/148 (73%), Gaps = 2/148 (1%)

Query: 32  EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASP 90
           E    GFL+T+V+ LV + R  SL  +TFGLACCA+EMM A   RYD+ R G    RASP
Sbjct: 4   EEAPSGFLLTTVEDLVGYFRKASLWPVTFGLACCAIEMMAAGTSRYDISRLGMEVFRASP 63

Query: 91  RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150
           RQSD+MIVAG ++ KMA  +R+VYDQM  P++V+SMG CA+ GG ++ +Y++V+G D IV
Sbjct: 64  RQSDLMIVAGRVSQKMAPIVRQVYDQMAGPKWVLSMGVCASSGGMFN-NYAIVQGVDHIV 122

Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIR 178
           PVDIY+PGCPP  E L++ IL L ++I+
Sbjct: 123 PVDIYLPGCPPRPEMLLHAILALHQQIQ 150


>gi|197116578|ref|YP_002137005.1| trifunctional NADH dehydrogenase subunit I B/C/D [Geobacter
           bemidjiensis Bem]
 gi|218528047|sp|B5E972|NUBCD_GEOBB RecName: Full=NADH-quinone oxidoreductase subunit B/C/D; AltName:
           Full=NADH dehydrogenase I subunit B/C/D; AltName:
           Full=NDH-1 subunit B/C/D
 gi|197085938|gb|ACH37209.1| NADH dehydrogenase I, B/C/D subunits [Geobacter bemidjiensis Bem]
          Length = 794

 Score =  166 bits (420), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 77/144 (53%), Positives = 107/144 (74%), Gaps = 2/144 (1%)

Query: 36  KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSD 94
           +  L+ S+D ++ W R  SL  M FGL+CC VEMM +   RYD+ RFG    R +PR+SD
Sbjct: 11  ENVLLASLDDMINWGRANSLWPMFFGLSCCFVEMMTSFTSRYDVSRFGAEVLRGTPRESD 70

Query: 95  VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154
           +M++AGT+  KMA ++ R+YDQM EP++VISMGSCAN GG Y   YSVV+G ++I+PVD+
Sbjct: 71  LMVIAGTVFKKMAPSILRLYDQMAEPKWVISMGSCANSGGMYDV-YSVVQGVNQILPVDL 129

Query: 155 YVPGCPPTAEALIYGILLLQKKIR 178
           Y+PGCPP  E+ + G++LLQ+KIR
Sbjct: 130 YIPGCPPRPESFLEGLMLLQQKIR 153


>gi|226365381|ref|YP_002783164.1| NADH dehydrogenase subunit B [Rhodococcus opacus B4]
 gi|254767797|sp|C1AYM4|NUOB_RHOOB RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|226243871|dbj|BAH54219.1| NADH-quinone oxidoreductase chain B [Rhodococcus opacus B4]
          Length = 184

 Score =  166 bits (420), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 80/151 (52%), Positives = 112/151 (74%), Gaps = 2/151 (1%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APRAS 89
            E    GFL+T+V+ L  + R GSL   +FGLACCA+EMM  +  R+D+ RFG  A RAS
Sbjct: 4   EEKLPSGFLLTTVEGLAGYVRKGSLWPASFGLACCAIEMMATAGGRFDIARFGMEAFRAS 63

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQ+D+MIVAG ++ KMA  LR++YDQM EP++V++MG CA+ GG ++ +Y++V+G D I
Sbjct: 64  PRQADLMIVAGRVSQKMAPVLRQIYDQMVEPKWVLAMGVCASSGGMFN-NYAIVQGVDHI 122

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           VPVDIY+PGCPP  E L+  IL L +KI+++
Sbjct: 123 VPVDIYLPGCPPRPEMLLNAILTLHEKIQQM 153


>gi|171910632|ref|ZP_02926102.1| NADH-quinone oxidoreductase, B subunit [Verrucomicrobium spinosum
           DSM 4136]
          Length = 177

 Score =  166 bits (420), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 79/154 (51%), Positives = 110/154 (71%), Gaps = 7/154 (4%)

Query: 27  SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP 86
           S+I S +     ++T +D  + W R  SL  M  GLACCA+E+M  +  RYD+ RFG   
Sbjct: 14  SKIESNV-----VITRLDAAINWMRKNSLWPMPMGLACCAIELMATASSRYDISRFGAEV 68

Query: 87  -RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRG 145
            R SPRQSDVM+VAGT+T KMA A++R++DQMPEP++ I+MG+CA+ GG Y  SY+V++G
Sbjct: 69  FRFSPRQSDVMVVAGTVTYKMALAVKRIWDQMPEPKWCIAMGACASSGGMYR-SYAVLQG 127

Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
            DR++PVD+Y+ GCPP  EAL+ G   LQ+KI +
Sbjct: 128 IDRLIPVDVYISGCPPRPEALLEGFFRLQQKIEK 161


>gi|218129269|ref|ZP_03458073.1| hypothetical protein BACEGG_00846 [Bacteroides eggerthii DSM 20697]
 gi|317475241|ref|ZP_07934508.1| NADH-quinone oxidoreductase [Bacteroides eggerthii 1_2_48FAA]
 gi|217988647|gb|EEC54967.1| hypothetical protein BACEGG_00846 [Bacteroides eggerthii DSM 20697]
 gi|316908694|gb|EFV30381.1| NADH-quinone oxidoreductase [Bacteroides eggerthii 1_2_48FAA]
          Length = 194

 Score =  166 bits (420), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 72/137 (52%), Positives = 99/137 (72%), Gaps = 1/137 (0%)

Query: 43  VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APRASPRQSDVMIVAGT 101
           +D  V W R+ SL  +TF  +CC +E M     RYD+ RFGF   RASPRQ+D+++V GT
Sbjct: 42  LDDFVNWGRSNSLWPLTFATSCCGIEFMALGAARYDMARFGFEVARASPRQADMIMVCGT 101

Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP 161
           +TNKMA  L+R+YDQM +P+YVI++G CA  GG +  SY VV G D+I+PVD+Y+PGCPP
Sbjct: 102 ITNKMAPVLKRLYDQMADPKYVIAVGGCAVSGGPFKKSYHVVNGVDKILPVDVYIPGCPP 161

Query: 162 TAEALIYGILLLQKKIR 178
             EA  YG++ LQ+K++
Sbjct: 162 RPEAFYYGMMQLQRKVK 178


>gi|296140852|ref|YP_003648095.1| NADH-quinone oxidoreductase subunit beta [Tsukamurella
           paurometabola DSM 20162]
 gi|296028986|gb|ADG79756.1| NADH-quinone oxidoreductase, B subunit [Tsukamurella paurometabola
           DSM 20162]
          Length = 184

 Score =  166 bits (420), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 77/142 (54%), Positives = 109/142 (76%), Gaps = 2/142 (1%)

Query: 37  GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APRASPRQSDV 95
           GFL+++++ +  +AR GSL   TFGLACCA+EMM  + PR+D+ RFG  A RASPRQ+D+
Sbjct: 10  GFLLSTLETVAGYARKGSLWPATFGLACCAIEMMATTGPRFDIARFGMEAFRASPRQADL 69

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
           MIVAG ++ KMA  LR+VYDQM EP++V++MG CA+ GG ++ +Y+VV+G D +VPVDIY
Sbjct: 70  MIVAGRVSQKMAPVLRQVYDQMAEPKWVLAMGVCASSGGMFN-NYAVVQGVDHVVPVDIY 128

Query: 156 VPGCPPTAEALIYGILLLQKKI 177
           +PGCPP  E L+  ++ L  K+
Sbjct: 129 LPGCPPRPEMLLNALIALHDKV 150


>gi|166363918|ref|YP_001656191.1| NADH dehydrogenase subunit B [Microcystis aeruginosa NIES-843]
 gi|218527913|sp|B0JSV5|NDHK_MICAN RecName: Full=NAD(P)H-quinone oxidoreductase subunit K; AltName:
           Full=NAD(P)H dehydrogenase I subunit K; AltName:
           Full=NDH-1 subunit K; Short=NDH-K
 gi|166086291|dbj|BAG00999.1| NADH dehydrogenase subunit [Microcystis aeruginosa NIES-843]
          Length = 247

 Score =  166 bits (420), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 78/175 (44%), Positives = 119/175 (68%), Gaps = 4/175 (2%)

Query: 4   TTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLA 63
           T+  ++II  QS   L  ++   ++++ +++    ++T+VD L  WAR  SL  M +G A
Sbjct: 6   TSEFKQIIEQQSEKILNPIER--TKVTQDLSE-NVILTTVDDLYNWARLSSLWPMLYGTA 62

Query: 64  CCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYV 123
           CC +E       R+D +RFG  PR+SPRQ+D++I AGT+T KMA AL R+Y++MPEP+YV
Sbjct: 63  CCFIEFAALIGSRFDFDRFGLVPRSSPRQADLIITAGTITMKMAPALVRLYEEMPEPKYV 122

Query: 124 ISMGSCA-NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
           I+MG+C   GG +   S + VRG D+++PVD+Y+PGCPP  EA+I  I+ L+KK+
Sbjct: 123 IAMGACTITGGMFSSDSTTAVRGVDKLIPVDVYIPGCPPRPEAIIDAIIKLRKKV 177


>gi|329962484|ref|ZP_08300484.1| putative NADH dehydrogenase I subunit B [Bacteroides fluxus YIT
           12057]
 gi|328530040|gb|EGF56928.1| putative NADH dehydrogenase I subunit B [Bacteroides fluxus YIT
           12057]
          Length = 196

 Score =  166 bits (420), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 72/137 (52%), Positives = 99/137 (72%), Gaps = 1/137 (0%)

Query: 43  VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APRASPRQSDVMIVAGT 101
           +D  V W R+ SL  +TF  +CC +E M     RYD+ RFGF   RASPRQ+D+++V GT
Sbjct: 42  LDDFVNWGRSNSLWPLTFATSCCGIEFMALGAARYDMARFGFEVARASPRQADMIMVCGT 101

Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP 161
           +TNKMA  L+R+YDQM +P+YVI++G CA  GG +  SY VV G D+I+PVD+Y+PGCPP
Sbjct: 102 ITNKMAPVLKRLYDQMADPKYVIAVGGCAVSGGPFKKSYHVVNGVDKILPVDVYIPGCPP 161

Query: 162 TAEALIYGILLLQKKIR 178
             EA  YG++ LQ+K++
Sbjct: 162 RPEAFYYGMMQLQRKVK 178


>gi|261879876|ref|ZP_06006303.1| NADH dehydrogenase I subunit B [Prevotella bergensis DSM 17361]
 gi|270333469|gb|EFA44255.1| NADH dehydrogenase I subunit B [Prevotella bergensis DSM 17361]
          Length = 262

 Score =  166 bits (419), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 74/161 (45%), Positives = 109/161 (67%), Gaps = 3/161 (1%)

Query: 21  KVDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78
           K +    RI+ E+   G   ++ S+D  + W R+ S   +TFG +CC +E M     RYD
Sbjct: 18  KDNDTLERIAKELNDGGANVVLGSLDAAINWGRSNSPWSLTFGTSCCGIEFMAIGCSRYD 77

Query: 79  LERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137
           + RFG+   R SPRQ+D+++ AGT+TNKMA   +R+YD+M EP+YV+++G C   GG + 
Sbjct: 78  MARFGWEVTRNSPRQADLIMCAGTITNKMAPVFKRLYDEMAEPKYVVAVGGCTISGGPFK 137

Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
            SY+VVRG   +VPVD+Y+PGCPP  E+LIYG++ LQ+KI+
Sbjct: 138 KSYNVVRGISELVPVDVYIPGCPPRPESLIYGMMQLQRKIK 178


>gi|238061184|ref|ZP_04605893.1| NADH-quinone oxidoreductase, B subunit [Micromonospora sp. ATCC
           39149]
 gi|237882995|gb|EEP71823.1| NADH-quinone oxidoreductase, B subunit [Micromonospora sp. ATCC
           39149]
          Length = 204

 Score =  166 bits (419), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 76/133 (57%), Positives = 102/133 (76%), Gaps = 1/133 (0%)

Query: 46  LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA-SPRQSDVMIVAGTLTN 104
           ++ W R  SL    FGLACCA+E +  SM R+D  R G  P A  PRQ+D+M+V+GT+T+
Sbjct: 14  VLNWGRRYSLWVFNFGLACCAIEFIATSMGRHDFIRLGVIPFAHGPRQADLMVVSGTVTD 73

Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164
           KMA A++R+Y+QMPEP+YVIS G+C+N GG Y  SYSV +G D+++PVD+YVPGCPP  E
Sbjct: 74  KMAPAIKRLYEQMPEPKYVISFGACSNCGGPYWDSYSVTKGVDQLIPVDVYVPGCPPRPE 133

Query: 165 ALIYGILLLQKKI 177
           AL++GIL LQ+KI
Sbjct: 134 ALLHGILRLQEKI 146


>gi|294140414|ref|YP_003556392.1| NADH dehydrogenase I subunit B [Shewanella violacea DSS12]
 gi|293326883|dbj|BAJ01614.1| NADH dehydrogenase I, B subunit [Shewanella violacea DSS12]
          Length = 219

 Score =  166 bits (419), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 76/148 (51%), Positives = 107/148 (72%), Gaps = 2/148 (1%)

Query: 32  EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASP 90
           E+  K  LVT ++ LV W R+ SL    FGL+CC VEM  +   R+D+ RFG    RA+P
Sbjct: 26  EVVEKNLLVTRLEDLVAWGRSNSLWPFNFGLSCCYVEMATSFTSRHDIARFGSEVIRATP 85

Query: 91  RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150
           R++D+++++GT+  KMA  ++ +YDQM EP++VISMGSCAN GG Y   YSVV+G D+ +
Sbjct: 86  READLIVISGTVFLKMAPVIKHLYDQMLEPKWVISMGSCANSGGMYDV-YSVVQGADKFL 144

Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIR 178
           P+D+YVPGCPP  EAL+YG+ LLQ+ I+
Sbjct: 145 PIDLYVPGCPPRPEALMYGLTLLQEAIK 172


>gi|83589827|ref|YP_429836.1| NADH dehydrogenase subunit B [Moorella thermoacetica ATCC 39073]
 gi|123524686|sp|Q2RJU6|NUOB_MOOTA RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|83572741|gb|ABC19293.1| NADH dehydrogenase subunit B [Moorella thermoacetica ATCC 39073]
          Length = 166

 Score =  166 bits (419), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 80/142 (56%), Positives = 106/142 (74%), Gaps = 1/142 (0%)

Query: 37  GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95
             ++++VD ++ + R  S   +TFGLACCA+EMM A   RYD+ RFG+   R SPRQ+D+
Sbjct: 16  NIILSTVDAMLNYCRAHSFWPVTFGLACCAIEMMAAGGARYDIARFGYEVFRPSPRQADL 75

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
           MIVAGT+T KMA  +RR+Y+QMP P++VI+MGSCA  GG +  SY+VV G D IVPVD+Y
Sbjct: 76  MIVAGTVTRKMAPLVRRLYEQMPAPKWVIAMGSCAISGGPFVDSYNVVPGVDTIVPVDVY 135

Query: 156 VPGCPPTAEALIYGILLLQKKI 177
           VPGC P  EALI G+L L+KK+
Sbjct: 136 VPGCAPRPEALINGLLALKKKV 157


>gi|159026401|emb|CAO88930.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 247

 Score =  166 bits (419), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 78/175 (44%), Positives = 119/175 (68%), Gaps = 4/175 (2%)

Query: 4   TTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLA 63
           T+  ++II  QS   L  ++   ++++ +++    ++T+VD L  WAR  SL  M +G A
Sbjct: 6   TSEFKQIIEQQSEKILNPIER--TKVTQDLSE-NVILTTVDDLYNWARLSSLWPMLYGTA 62

Query: 64  CCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYV 123
           CC +E       R+D +RFG  PR+SPRQ+D++I AGT+T KMA AL R+Y++MPEP+YV
Sbjct: 63  CCFIEFAALIGSRFDFDRFGLVPRSSPRQADLIITAGTVTMKMAPALVRLYEEMPEPKYV 122

Query: 124 ISMGSCA-NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
           I+MG+C   GG +   S + VRG D+++PVD+Y+PGCPP  EA+I  I+ L+KK+
Sbjct: 123 IAMGACTITGGMFSSDSTTAVRGVDKLIPVDVYIPGCPPRPEAIIDAIIKLRKKV 177


>gi|296133536|ref|YP_003640783.1| NADH-quinone oxidoreductase, B subunit [Thermincola sp. JR]
 gi|296032114|gb|ADG82882.1| NADH-quinone oxidoreductase, B subunit [Thermincola potens JR]
          Length = 170

 Score =  166 bits (419), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 79/148 (53%), Positives = 106/148 (71%), Gaps = 1/148 (0%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RAS 89
            E+     ++++V+    W R+ SL  +TFGLACCA+EMM A+  RYDL RFG    R S
Sbjct: 10  DELVRNNVVLSTVEAAFNWCRSRSLWPLTFGLACCAIEMMAAADTRYDLARFGSEVFRPS 69

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQ D+MI+AGT+T KM   + R+Y+QM EP+YV++MGSCA  GG +  SY+VV G D  
Sbjct: 70  PRQCDLMIIAGTITKKMQPVVLRLYEQMAEPKYVLAMGSCAISGGPFVDSYNVVLGGDTF 129

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKI 177
           +PVD+YVPGCPP  EALIYGI+ L++K+
Sbjct: 130 LPVDVYVPGCPPRPEALIYGIMQLREKV 157


>gi|329957597|ref|ZP_08298072.1| putative NADH dehydrogenase I subunit B [Bacteroides clarus YIT
           12056]
 gi|328522474|gb|EGF49583.1| putative NADH dehydrogenase I subunit B [Bacteroides clarus YIT
           12056]
          Length = 195

 Score =  166 bits (419), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 72/137 (52%), Positives = 99/137 (72%), Gaps = 1/137 (0%)

Query: 43  VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APRASPRQSDVMIVAGT 101
           +D  V W R+ SL  +TF  +CC +E M     RYD+ RFGF   RASPRQ+D+++V GT
Sbjct: 42  LDDFVNWGRSNSLWPLTFATSCCGIEFMALGAARYDMARFGFEVARASPRQADMIMVCGT 101

Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP 161
           +TNKMA  L+R+YDQM +P+YVI++G CA  GG +  SY VV G D+I+PVD+Y+PGCPP
Sbjct: 102 ITNKMAPVLKRLYDQMADPKYVIAVGGCAVSGGPFKKSYHVVNGVDKILPVDVYIPGCPP 161

Query: 162 TAEALIYGILLLQKKIR 178
             EA  YG++ LQ+K++
Sbjct: 162 RPEAFYYGMMQLQRKVK 178


>gi|300782452|ref|YP_003762743.1| NADH dehydrogenase I subunit B [Amycolatopsis mediterranei U32]
 gi|299791966|gb|ADJ42341.1| NADH dehydrogenase I subunit B [Amycolatopsis mediterranei U32]
          Length = 182

 Score =  166 bits (419), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 81/149 (54%), Positives = 105/149 (70%), Gaps = 2/149 (1%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RAS 89
            E    G L+ S++ LV WAR  SL   TFGLACCA+EMM     RYD+ RFG     A+
Sbjct: 4   EEKLPNGILLASLEGLVNWARKNSLWPATFGLACCAIEMMTVGGSRYDIARFGMERFSAT 63

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQ+D+MIVAG +T KMA  LR++YDQM EPR+V++MG CA+ GG ++ +Y+VV+G D I
Sbjct: 64  PRQADLMIVAGRVTQKMAPVLRQIYDQMAEPRWVLAMGVCASSGGMFN-NYAVVQGVDHI 122

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           VPVD+Y+PGCPP  E L+  IL L  KI+
Sbjct: 123 VPVDMYLPGCPPRPEMLLDAILKLHAKIQ 151


>gi|238927268|ref|ZP_04659028.1| proton-translocating NADH-ubiquinone oxidoreductase, subunit B
           [Selenomonas flueggei ATCC 43531]
 gi|238884855|gb|EEQ48493.1| proton-translocating NADH-ubiquinone oxidoreductase, subunit B
           [Selenomonas flueggei ATCC 43531]
          Length = 179

 Score =  166 bits (419), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 79/154 (51%), Positives = 108/154 (70%), Gaps = 1/154 (0%)

Query: 32  EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASP 90
           E   +   V  +D+L+ WA   S+  ++ GLACCA+EMM  +  R+DL RFG+   R  P
Sbjct: 9   ESLRENVFVVKLDELLRWAHANSIWPLSSGLACCAIEMMTTATARFDLARFGYEVFRPCP 68

Query: 91  RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150
           RQ+D+ IVAGTLT KMA A+ R+Y++MPEP+YVI+MG+CA  GG +  SYSVV G D ++
Sbjct: 69  RQADLFIVAGTLTWKMAPAVVRLYEEMPEPKYVIAMGACAIAGGPFADSYSVVSGVDELL 128

Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           PVD+Y+PGCPP  EALI G+L L++KI     V+
Sbjct: 129 PVDVYIPGCPPRPEALIDGMLKLREKILHPERVR 162


>gi|254446527|ref|ZP_05060003.1| NADH-quinone oxidoreductase, B subunit subfamily [Verrucomicrobiae
           bacterium DG1235]
 gi|198260835|gb|EDY85143.1| NADH-quinone oxidoreductase, B subunit subfamily [Verrucomicrobiae
           bacterium DG1235]
          Length = 171

 Score =  165 bits (418), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 78/142 (54%), Positives = 104/142 (73%), Gaps = 2/142 (1%)

Query: 37  GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95
           G +V+  D ++ W RT SL  M  GLACCA+E+M A   ++D+ RFG    R SPRQSDV
Sbjct: 17  GVIVSKADAVINWIRTHSLWPMPMGLACCAIELMAAGASKFDISRFGAEVMRFSPRQSDV 76

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
           MIVAGT+T KMA  +RR+YDQM EP++VI+MG+CA+ GG Y  SY+ ++G DRIVPVD+Y
Sbjct: 77  MIVAGTVTYKMAPIVRRIYDQMAEPKWVIAMGACASSGGMYR-SYATLQGVDRIVPVDVY 135

Query: 156 VPGCPPTAEALIYGILLLQKKI 177
           + GCPP  EAL+  ++ LQ K+
Sbjct: 136 ISGCPPRPEALLDALIKLQDKV 157


>gi|326329611|ref|ZP_08195933.1| NADH dehydrogenase I, B subunit [Nocardioidaceae bacterium Broad-1]
 gi|325952607|gb|EGD44625.1| NADH dehydrogenase I, B subunit [Nocardioidaceae bacterium Broad-1]
          Length = 184

 Score =  165 bits (418), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 80/150 (53%), Positives = 108/150 (72%), Gaps = 2/150 (1%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RAS 89
            E    G L+T+V+ L  + R  SL   TFGLACCA+EMM +  P+YDL R+G    RAS
Sbjct: 4   EEKLPSGVLLTTVEGLAGYFRKASLWPATFGLACCAIEMMTSGGPKYDLARYGMEVFRAS 63

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQ+D+MIVAG ++ KMA  LR++YDQMPEP++V++MG CA+ GG ++ +Y++V+G D I
Sbjct: 64  PRQADLMIVAGRVSQKMAPVLRQIYDQMPEPKWVLAMGVCASSGGMFN-NYAIVQGVDHI 122

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           VPVD+Y+PGCPP  E LI  IL L  KI+ 
Sbjct: 123 VPVDMYLPGCPPRPEMLIDAILKLHDKIQH 152


>gi|304437258|ref|ZP_07397218.1| NADH-quinone oxidoreductase subunit B [Selenomonas sp. oral taxon
           149 str. 67H29BP]
 gi|304369750|gb|EFM23415.1| NADH-quinone oxidoreductase subunit B [Selenomonas sp. oral taxon
           149 str. 67H29BP]
          Length = 179

 Score =  165 bits (418), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 79/154 (51%), Positives = 108/154 (70%), Gaps = 1/154 (0%)

Query: 32  EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASP 90
           E   +   V  +D+L+ WA   S+  ++ GLACCA+EMM  +  R+DL RFG+   R  P
Sbjct: 9   ECLRENVFVVKLDELLRWAHANSVWPLSSGLACCAIEMMTTATARFDLARFGYEVFRPCP 68

Query: 91  RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150
           RQ+D+ IVAGTLT KMA A+ R+Y++MPEP+YVI+MG+CA  GG +  SYSVV G D ++
Sbjct: 69  RQADLFIVAGTLTWKMAPAVVRLYEEMPEPKYVIAMGACAIAGGPFADSYSVVSGVDELL 128

Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           PVD+Y+PGCPP  EALI G+L L++KI     V+
Sbjct: 129 PVDVYIPGCPPRPEALIDGMLKLREKILHPERVR 162


>gi|160891170|ref|ZP_02072173.1| hypothetical protein BACUNI_03617 [Bacteroides uniformis ATCC 8492]
 gi|317481067|ref|ZP_07940146.1| NADH-quinone oxidoreductase [Bacteroides sp. 4_1_36]
 gi|156859391|gb|EDO52822.1| hypothetical protein BACUNI_03617 [Bacteroides uniformis ATCC 8492]
 gi|316902780|gb|EFV24655.1| NADH-quinone oxidoreductase [Bacteroides sp. 4_1_36]
          Length = 193

 Score =  165 bits (418), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 71/137 (51%), Positives = 99/137 (72%), Gaps = 1/137 (0%)

Query: 43  VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APRASPRQSDVMIVAGT 101
           +D  V W R+ SL  +TF  +CC +E M     RYD+ RFGF   RASPRQ+D+++V GT
Sbjct: 42  LDDFVNWGRSNSLWPLTFATSCCGIEFMALGAARYDMARFGFEVARASPRQADMIMVCGT 101

Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP 161
           +TNKMA  L+R+YDQM +P+YV+++G CA  GG +  SY VV G D+I+PVD+Y+PGCPP
Sbjct: 102 ITNKMAPVLKRLYDQMADPKYVVAVGGCAVSGGPFKKSYHVVNGVDKILPVDVYIPGCPP 161

Query: 162 TAEALIYGILLLQKKIR 178
             EA  YG++ LQ+K++
Sbjct: 162 RPEAFYYGMMQLQRKVK 178


>gi|269128582|ref|YP_003301952.1| NADH-quinone oxidoreductase subunit B [Thermomonospora curvata DSM
           43183]
 gi|268313540|gb|ACY99914.1| NADH-quinone oxidoreductase, B subunit [Thermomonospora curvata DSM
           43183]
          Length = 323

 Score =  165 bits (418), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 77/133 (57%), Positives = 101/133 (75%), Gaps = 1/133 (0%)

Query: 46  LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS-PRQSDVMIVAGTLTN 104
           ++ W R  SL    FGLACCA+E + ASM R+D  R G  P A  PRQ+D+M+V+GT+T+
Sbjct: 25  VLNWGRRYSLWVFNFGLACCAIEFIAASMSRHDFIRLGVIPFAPGPRQADLMVVSGTVTD 84

Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164
           KMA A+RR+Y+QMPEP+YVIS G+C+N GG Y  SY V +G D+I+PVD+YVPGCPP  E
Sbjct: 85  KMAPAVRRLYEQMPEPKYVISFGACSNCGGPYWDSYCVTKGVDQIIPVDVYVPGCPPRPE 144

Query: 165 ALIYGILLLQKKI 177
           AL+ GI+ LQ+KI
Sbjct: 145 ALLQGIVRLQEKI 157


>gi|167764930|ref|ZP_02437051.1| hypothetical protein BACSTE_03322 [Bacteroides stercoris ATCC
           43183]
 gi|167697599|gb|EDS14178.1| hypothetical protein BACSTE_03322 [Bacteroides stercoris ATCC
           43183]
          Length = 195

 Score =  165 bits (417), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 71/137 (51%), Positives = 99/137 (72%), Gaps = 1/137 (0%)

Query: 43  VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APRASPRQSDVMIVAGT 101
           +D  + W R+ SL  +TF  +CC +E M     RYD+ RFGF   RASPRQ+D+++V GT
Sbjct: 42  LDDFIDWGRSNSLWPLTFATSCCGIEFMALGAARYDMARFGFEVARASPRQADMIMVCGT 101

Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP 161
           +TNKMA  L+R+YDQM +P+YVI++G CA  GG +  SY VV G D+I+PVD+Y+PGCPP
Sbjct: 102 ITNKMAPVLKRLYDQMADPKYVIAVGGCAVSGGPFKKSYHVVNGVDKILPVDVYIPGCPP 161

Query: 162 TAEALIYGILLLQKKIR 178
             EA  YG++ LQ+K++
Sbjct: 162 RPEAFYYGMMQLQRKVK 178


>gi|326382762|ref|ZP_08204452.1| NADH dehydrogenase subunit B [Gordonia neofelifaecis NRRL B-59395]
 gi|326198352|gb|EGD55536.1| NADH dehydrogenase subunit B [Gordonia neofelifaecis NRRL B-59395]
          Length = 184

 Score =  165 bits (417), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 78/145 (53%), Positives = 110/145 (75%), Gaps = 2/145 (1%)

Query: 37  GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APRASPRQSDV 95
           GF++++V+ L  + R GSL   TFGLACCA+EMM  +  RYDL RFG  A RASPRQ+D+
Sbjct: 10  GFVLSTVESLAGYFRKGSLWPATFGLACCAIEMMATTAGRYDLARFGMEAFRASPRQADL 69

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
           MIVAG ++ KMA  LR++YDQM EP++V++MG CA+ GG ++ +Y++V+G D +VPVDIY
Sbjct: 70  MIVAGRVSQKMAPVLRQIYDQMAEPKWVLAMGVCASSGGMFN-NYAIVQGVDHVVPVDIY 128

Query: 156 VPGCPPTAEALIYGILLLQKKIRRV 180
           +PGCPP  E L+  IL L  +I+++
Sbjct: 129 LPGCPPRPEMLLNAILELHDQIQQM 153


>gi|163751847|ref|ZP_02159062.1| NADH dehydrogenase beta subunit [Shewanella benthica KT99]
 gi|161328263|gb|EDP99425.1| NADH dehydrogenase beta subunit [Shewanella benthica KT99]
          Length = 218

 Score =  165 bits (417), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 75/148 (50%), Positives = 107/148 (72%), Gaps = 2/148 (1%)

Query: 32  EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASP 90
           E+  K  L+T ++ LV W R+ SL    FGL+CC VEM  +   R+D+ RFG    RA+P
Sbjct: 25  EVVEKNLLITRLEDLVAWGRSNSLWPFNFGLSCCYVEMATSFTSRHDIARFGSEVIRATP 84

Query: 91  RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150
           R++D+++++GT+  KMA  ++ +YDQM EP++VISMGSCAN GG Y   YSVV+G D+ +
Sbjct: 85  READLIVISGTVFLKMAPVIKHLYDQMLEPKWVISMGSCANSGGMYDV-YSVVQGADKFL 143

Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIR 178
           P+D+YVPGCPP  EAL+YG+ LLQ+ I+
Sbjct: 144 PIDLYVPGCPPRPEALMYGLTLLQEAIK 171


>gi|196231863|ref|ZP_03130719.1| NADH-quinone oxidoreductase, B subunit [Chthoniobacter flavus
           Ellin428]
 gi|196223985|gb|EDY18499.1| NADH-quinone oxidoreductase, B subunit [Chthoniobacter flavus
           Ellin428]
          Length = 178

 Score =  164 bits (416), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 76/141 (53%), Positives = 106/141 (75%), Gaps = 2/141 (1%)

Query: 39  LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMI 97
           ++T +D  + W R  SL  M  GLACCA+E+M A   R+D+ RFG    R SPRQSDVMI
Sbjct: 18  IITQLDAAMNWMRKNSLWPMPMGLACCAIELMAAGASRFDIARFGAEVMRFSPRQSDVMI 77

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGT+T KMA A++R++DQMPEP++ I+MG+CA+ GG Y  SY+V++G D+++PVD+Y+ 
Sbjct: 78  VAGTVTYKMALAVKRIWDQMPEPKWCIAMGACASSGGMYR-SYAVLQGIDQLIPVDVYIS 136

Query: 158 GCPPTAEALIYGILLLQKKIR 178
           GCPP  EAL+ G++ LQ+KI 
Sbjct: 137 GCPPRPEALLEGLMKLQRKIE 157


>gi|145225061|ref|YP_001135739.1| NADH dehydrogenase subunit B [Mycobacterium gilvum PYR-GCK]
 gi|315445430|ref|YP_004078309.1| NADH dehydrogenase subunit B [Mycobacterium sp. Spyr1]
 gi|238065177|sp|A4TDB9|NUOB_MYCGI RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|145217547|gb|ABP46951.1| NADH dehydrogenase subunit B [Mycobacterium gilvum PYR-GCK]
 gi|315263733|gb|ADU00475.1| NADH dehydrogenase subunit B [Mycobacterium sp. Spyr1]
          Length = 184

 Score =  164 bits (416), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 75/145 (51%), Positives = 110/145 (75%), Gaps = 2/145 (1%)

Query: 37  GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95
           G L+++V+++  + R GSL   TFGLACCA+EMM  + PR+D+ RFG     A+PRQ+D+
Sbjct: 10  GILLSTVEKVAGYVRKGSLWPATFGLACCAIEMMATAGPRFDISRFGMERFSATPRQADL 69

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
           MIVAG ++ KMA  LR++YDQM EP++V++MG CA+ GG ++ +Y+VV+G D +VPVDIY
Sbjct: 70  MIVAGRVSQKMAPVLRQIYDQMAEPKWVLAMGVCASSGGMFN-NYAVVQGVDHVVPVDIY 128

Query: 156 VPGCPPTAEALIYGILLLQKKIRRV 180
           +PGCPP  E L++ IL L  KI+++
Sbjct: 129 LPGCPPRPEMLLHAILKLHDKIQQM 153


>gi|296081619|emb|CBI20624.3| unnamed protein product [Vitis vinifera]
          Length = 94

 Score =  164 bits (415), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 76/84 (90%), Positives = 81/84 (96%)

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
           MIVAGTLTNKMA ALR+VYDQMPEPR+V+SMGSCANGGGYYHYSYSVVRGCDRIVPVDIY
Sbjct: 1   MIVAGTLTNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 60

Query: 156 VPGCPPTAEALIYGILLLQKKIRR 179
           VPGCPPTAEAL+YG+L LQKKI R
Sbjct: 61  VPGCPPTAEALLYGLLQLQKKINR 84


>gi|256390056|ref|YP_003111620.1| NADH-quinone oxidoreductase subunit beta [Catenulispora acidiphila
           DSM 44928]
 gi|256356282|gb|ACU69779.1| NADH-quinone oxidoreductase, B subunit [Catenulispora acidiphila
           DSM 44928]
          Length = 291

 Score =  164 bits (415), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 75/133 (56%), Positives = 100/133 (75%), Gaps = 1/133 (0%)

Query: 46  LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS-PRQSDVMIVAGTLTN 104
           ++ W R  SL    FGLACCA+E +  SM R+D  R G  P A  PRQ+D+M+V+GT+++
Sbjct: 41  VLNWGRRYSLWVFNFGLACCAIEFIATSMARHDFIRLGVIPFAPGPRQADLMVVSGTVSD 100

Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164
           KMA A++R+YDQMPEP+YVIS GSC+N GG Y  SY V +G D+++PVD+YVPGCPP  E
Sbjct: 101 KMAPAVKRLYDQMPEPKYVISFGSCSNCGGPYWDSYCVTKGVDQVIPVDVYVPGCPPRPE 160

Query: 165 ALIYGILLLQKKI 177
           AL+ GI+ LQ+KI
Sbjct: 161 ALLQGIIKLQEKI 173


>gi|298244920|ref|ZP_06968726.1| NADH-quinone oxidoreductase, B subunit [Ktedonobacter racemifer DSM
           44963]
 gi|297552401|gb|EFH86266.1| NADH-quinone oxidoreductase, B subunit [Ktedonobacter racemifer DSM
           44963]
          Length = 201

 Score =  164 bits (415), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 79/136 (58%), Positives = 104/136 (76%), Gaps = 2/136 (1%)

Query: 48  TWARTGSLMWMTFGLACCAVEMM-QASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNK 105
            WAR+ S+  + +GLACCA+EM+  AS P+YDL RFG    R+SPRQ+D+MIVAGT++ K
Sbjct: 55  NWARSKSVWPLGYGLACCAIEMIASASAPQYDLSRFGSEVFRSSPRQADLMIVAGTVSIK 114

Query: 106 MASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEA 165
           M   LR +Y+QMPEP++VISMG CAN GG ++ SY  V+G D IVPVD+Y+PGCPP  EA
Sbjct: 115 MGPRLRLLYEQMPEPKWVISMGQCANSGGEFYDSYYTVQGVDTIVPVDVYIPGCPPRPEA 174

Query: 166 LIYGILLLQKKIRRVG 181
           LI G+L L++KI + G
Sbjct: 175 LIEGLLKLREKIAKQG 190


>gi|302523878|ref|ZP_07276220.1| NADH dehydrogenase subunit I B [Streptomyces sp. AA4]
 gi|302432773|gb|EFL04589.1| NADH dehydrogenase subunit I B [Streptomyces sp. AA4]
          Length = 182

 Score =  164 bits (415), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 81/149 (54%), Positives = 104/149 (69%), Gaps = 2/149 (1%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RAS 89
            E    G L+ S++ LV WAR  SL   TFGLACCA EMM     RYD+ RFG     A+
Sbjct: 4   EEKLPNGILLASLEGLVNWARKNSLWPATFGLACCAFEMMSVGGSRYDIARFGMERFSAT 63

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQ+D+MIVAG +T KMA  LR++YDQM EP++V+SMG CA+ GG ++ +Y+VV+G D I
Sbjct: 64  PRQADLMIVAGRVTQKMAPVLRQIYDQMAEPKWVLSMGVCASSGGMFN-NYAVVQGVDHI 122

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           VPVD+Y+PGCPP  E L+  IL L  KI+
Sbjct: 123 VPVDMYLPGCPPRPEMLLDAILKLHAKIQ 151


>gi|182412567|ref|YP_001817633.1| NADH-quinone oxidoreductase, B subunit [Opitutus terrae PB90-1]
 gi|238065033|sp|B1ZUJ0|NUOB2_OPITP RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName:
           Full=NADH dehydrogenase I subunit B 2; AltName:
           Full=NDH-1 subunit B 2
 gi|177839781|gb|ACB74033.1| NADH-quinone oxidoreductase, B subunit [Opitutus terrae PB90-1]
          Length = 191

 Score =  164 bits (415), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 81/142 (57%), Positives = 102/142 (71%), Gaps = 7/142 (4%)

Query: 41  TSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFG---FAPRASPRQSDVMI 97
             +D L+   R  SL  +TFGLACCA+EMM A M R+D+ RFG   F  R SPRQ+DVMI
Sbjct: 39  AKLDDLLALGRANSLWPLTFGLACCAIEMMAAGMARFDISRFGAEVF--RPSPRQADVMI 96

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY--SYSVVRGCDRIVPVDIY 155
           VAGT+  KMA A++ +YDQM EP++VI+MG CA  GG + Y   Y+VV G D++ PVD+Y
Sbjct: 97  VAGTVNKKMAPAVKLLYDQMLEPKWVIAMGQCAISGGPFKYPGQYAVVEGVDQLFPVDVY 156

Query: 156 VPGCPPTAEALIYGILLLQKKI 177
           VPGCPP  EALI GIL L++KI
Sbjct: 157 VPGCPPRPEALIEGILKLEEKI 178


>gi|170727205|ref|YP_001761231.1| NADH-quinone oxidoreductase subunit B [Shewanella woodyi ATCC
           51908]
 gi|238065215|sp|B1KJU9|NUOB_SHEWM RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|169812552|gb|ACA87136.1| NADH-quinone oxidoreductase, B subunit [Shewanella woodyi ATCC
           51908]
          Length = 213

 Score =  164 bits (414), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 76/149 (51%), Positives = 106/149 (71%), Gaps = 2/149 (1%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RAS 89
            E+  K  LVT ++ LV W R+ SL    FGL+CC VEM  +   R+D+ RFG    RA+
Sbjct: 19  QEVVEKNLLVTRLEDLVAWGRSNSLWPFNFGLSCCYVEMATSFTSRHDIARFGSEVIRAT 78

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PR++D+++++GT+  KMA  ++ +YDQM EP++VI MGSCAN GG Y   YSVV+G DR 
Sbjct: 79  PREADLIVISGTVFLKMAPVIKHLYDQMLEPKWVICMGSCANSGGMYDV-YSVVQGADRF 137

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           +P+D+YVPGCPP  EAL+YG+ LLQ+ I+
Sbjct: 138 LPIDLYVPGCPPRPEALMYGLTLLQEAIK 166


>gi|120402882|ref|YP_952711.1| NADH dehydrogenase subunit B [Mycobacterium vanbaalenii PYR-1]
 gi|238065183|sp|A1T6A5|NUOB_MYCVP RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|119955700|gb|ABM12705.1| NADH dehydrogenase subunit B [Mycobacterium vanbaalenii PYR-1]
          Length = 184

 Score =  164 bits (414), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 75/145 (51%), Positives = 110/145 (75%), Gaps = 2/145 (1%)

Query: 37  GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95
           G L+++V+++  + R GSL   TFGLACCA+EMM  + PR+D+ RFG     A+PRQ+D+
Sbjct: 10  GILLSTVEKVAGYVRKGSLWPATFGLACCAIEMMATAGPRFDISRFGMERFSATPRQADL 69

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
           MIVAG ++ KMA  LR++YDQM EP++V++MG CA+ GG ++ +Y+VV+G D +VPVDIY
Sbjct: 70  MIVAGRVSQKMAPVLRQIYDQMAEPKWVLAMGVCASSGGMFN-NYAVVQGVDHVVPVDIY 128

Query: 156 VPGCPPTAEALIYGILLLQKKIRRV 180
           +PGCPP  E L++ IL L  KI+++
Sbjct: 129 LPGCPPRPEMLLHAILKLHDKIQQM 153


>gi|227494504|ref|ZP_03924820.1| NADH dehydrogenase (quinone) [Actinomyces coleocanis DSM 15436]
 gi|226832238|gb|EEH64621.1| NADH dehydrogenase (quinone) [Actinomyces coleocanis DSM 15436]
          Length = 184

 Score =  164 bits (414), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 75/144 (52%), Positives = 110/144 (76%), Gaps = 2/144 (1%)

Query: 37  GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95
           G  +TS++ ++  AR  S   +T GLACC++EMM A  PR+D+ RFG    RASPR +D+
Sbjct: 10  GVALTSIEAVLDLARKHSQWPVTMGLACCSIEMMSAGTPRFDMARFGLEVFRASPRHADL 69

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
           MI+AG +++KMA  +RRVYD MPEP++VI+MG+CA+ GG ++ +Y++V+G D IVPVD+Y
Sbjct: 70  MIIAGRMSHKMAPIVRRVYDSMPEPKWVIAMGACASSGGMFN-NYALVQGADHIVPVDVY 128

Query: 156 VPGCPPTAEALIYGILLLQKKIRR 179
           +PGCPP  EALI  IL+L+++I +
Sbjct: 129 LPGCPPRPEALINSILVLREQISK 152


>gi|255019940|ref|ZP_05292014.1| NADH-ubiquinone oxidoreductase chain B [Acidithiobacillus caldus
           ATCC 51756]
 gi|254970599|gb|EET28087.1| NADH-ubiquinone oxidoreductase chain B [Acidithiobacillus caldus
           ATCC 51756]
          Length = 162

 Score =  164 bits (414), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 78/143 (54%), Positives = 105/143 (73%), Gaps = 2/143 (1%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APRASPRQSDVM 96
            L   +D+L+ W+R GSL  + FG +CC +EM+ A  PR+D+ RFG    R+SPRQ+DV+
Sbjct: 10  LLAGKLDELIAWSRAGSLWPLNFGTSCCFIEMVAAVTPRHDIARFGAEVLRSSPRQADVL 69

Query: 97  IVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV 156
           I +GT+  KMA  +  +Y QM EP++VISMGSCAN GG Y   YSV++G D+I+PVD+YV
Sbjct: 70  ICSGTVFAKMAPMIVEIYAQMLEPKWVISMGSCANSGGMYDV-YSVIQGLDQILPVDVYV 128

Query: 157 PGCPPTAEALIYGILLLQKKIRR 179
           PGCPP  EAL  G+LLLQ+KIR+
Sbjct: 129 PGCPPRPEALTDGLLLLQRKIRQ 151


>gi|312200066|ref|YP_004020127.1| NADH-quinone oxidoreductase B subunit [Frankia sp. EuI1c]
 gi|311231402|gb|ADP84257.1| NADH-quinone oxidoreductase, B subunit [Frankia sp. EuI1c]
          Length = 276

 Score =  164 bits (414), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 79/149 (53%), Positives = 107/149 (71%), Gaps = 2/149 (1%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RAS 89
            E    G L+ SV++L    R  SL  +TFGLACCA+EMM     RYDL RFG    RAS
Sbjct: 4   EEKLPSGVLLASVEKLAGMGRKSSLWPVTFGLACCAIEMMGTGAARYDLARFGMEVFRAS 63

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQ+D+MIVAG ++ KMA  LR++YDQMPEP++V+SMG CA+ GG ++ +Y++V+G D I
Sbjct: 64  PRQADLMIVAGRVSQKMAPVLRQIYDQMPEPKWVLSMGVCASSGGMFN-NYAIVQGVDHI 122

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           VPVD+Y+PGCPP  E L+  I+ + +KI+
Sbjct: 123 VPVDMYLPGCPPRPEMLMDAIMKIHRKIQ 151


>gi|297563968|ref|YP_003682941.1| NADH-quinone oxidoreductase, B subunit [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296848417|gb|ADH70435.1| NADH-quinone oxidoreductase, B subunit [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
          Length = 181

 Score =  164 bits (414), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 75/143 (52%), Positives = 106/143 (74%), Gaps = 2/143 (1%)

Query: 37  GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95
           G ++T+V+Q+V  AR  S+   TFGLACCA+EMM    P YDL RFG     A+PRQ+D+
Sbjct: 10  GIMLTTVEQVVGLARKSSMWPATFGLACCAIEMMSVGGPHYDLARFGMEKFGATPRQADL 69

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
           MIVAG ++ KMA  LR++YDQMPEP++VI+MG CA+ GG ++ +Y++V+G D +VPVD+Y
Sbjct: 70  MIVAGRVSQKMAPVLRQIYDQMPEPKWVIAMGVCASSGGMFN-NYAIVQGVDHVVPVDMY 128

Query: 156 VPGCPPTAEALIYGILLLQKKIR 178
           +PGCPP  E L+  +L L  K++
Sbjct: 129 LPGCPPRPEMLLDAVLKLHDKVQ 151


>gi|38505806|ref|NP_942425.1| NADH dehydrogenase subunit B [Synechocystis sp. PCC 6803]
 gi|131407|sp|P17062|NDHK2_SYNY3 RecName: Full=NAD(P)H-quinone oxidoreductase subunit K 2; AltName:
           Full=NAD(P)H dehydrogenase I subunit K 2; AltName:
           Full=NDH-1 subunit K 2; Short=NDH-K 2
 gi|48068|emb|CAA35236.1| unnamed protein product [Synechocystis sp. PCC 6803]
 gi|38423830|dbj|BAD02039.1| NADH dehydrogenase subunit [Synechocystis sp. PCC 6803]
          Length = 219

 Score =  164 bits (414), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 75/151 (49%), Positives = 110/151 (72%), Gaps = 2/151 (1%)

Query: 28  RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
           +++ E++ +  ++T +D +  WAR  +L  M FG ACC +E M A  PR+DLERFG  PR
Sbjct: 18  QVTKELS-ENVILTCLDDIYNWARLSTLYPMMFGTACCFMEFMAAFGPRFDLERFGSIPR 76

Query: 88  ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGC 146
           A+PRQ+D+MI AGT+T K A AL ++Y+Q+PEP+YVI+MG+C    G +   S + VRG 
Sbjct: 77  ATPRQADLMITAGTITMKYAPALVQLYEQIPEPKYVIAMGACTITAGMFSADSPTAVRGV 136

Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
           D+++PVD+Y+PGCPP  EA+I GI+ L+KK+
Sbjct: 137 DKLIPVDVYIPGCPPRPEAVIDGIIKLRKKV 167


>gi|41409300|ref|NP_962136.1| NADH dehydrogenase subunit B [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|118465722|ref|YP_883186.1| NADH dehydrogenase subunit B [Mycobacterium avium 104]
 gi|254776456|ref|ZP_05217972.1| NADH dehydrogenase subunit B [Mycobacterium avium subsp. avium ATCC
           25291]
 gi|296169191|ref|ZP_06850844.1| NADH-quinone oxidoreductase subunit B [Mycobacterium
           parascrofulaceum ATCC BAA-614]
 gi|81571071|sp|Q73V14|NUOB_MYCPA RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|238065174|sp|A0QJU8|NUOB_MYCA1 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|41398120|gb|AAS05750.1| NuoB [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|118167009|gb|ABK67906.1| NADH-quinone oxidoreductase chain b [Mycobacterium avium 104]
 gi|295896089|gb|EFG75756.1| NADH-quinone oxidoreductase subunit B [Mycobacterium
           parascrofulaceum ATCC BAA-614]
          Length = 184

 Score =  164 bits (414), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 74/145 (51%), Positives = 110/145 (75%), Gaps = 2/145 (1%)

Query: 37  GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95
           G L+++V+++  + R  SL   TFGLACCA+EMM  + PR+D+ RFG     A+PRQ+D+
Sbjct: 10  GILLSTVEKVAGYVRKNSLWPATFGLACCAIEMMATAGPRFDIARFGMERFSATPRQADL 69

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
           MIVAG ++ KMA  LR++YDQM EP++V++MG CA+ GG ++ +Y++V+G D +VPVDIY
Sbjct: 70  MIVAGRVSQKMAPVLRQIYDQMAEPKWVLAMGVCASSGGMFN-NYAIVQGVDHVVPVDIY 128

Query: 156 VPGCPPTAEALIYGILLLQKKIRRV 180
           +PGCPP  E L+Y IL L +KI+++
Sbjct: 129 LPGCPPRPEMLLYAILKLHEKIQQM 153


>gi|108798549|ref|YP_638746.1| NADH dehydrogenase subunit B [Mycobacterium sp. MCS]
 gi|126434147|ref|YP_001069838.1| NADH dehydrogenase subunit B [Mycobacterium sp. JLS]
 gi|122977218|sp|Q1BBP4|NUOB_MYCSS RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|238065180|sp|A3PWS0|NUOB_MYCSJ RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|108768968|gb|ABG07690.1| NADH dehydrogenase subunit B [Mycobacterium sp. MCS]
 gi|126233947|gb|ABN97347.1| NADH dehydrogenase subunit B [Mycobacterium sp. JLS]
          Length = 184

 Score =  164 bits (414), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 73/145 (50%), Positives = 111/145 (76%), Gaps = 2/145 (1%)

Query: 37  GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95
           G L+++V+++  + R GSL   TFGLACCA+EMM  + PR+D+ RFG     A+PRQ+D+
Sbjct: 10  GILLSTVEKVAGYVRAGSLWPATFGLACCAIEMMSTAGPRFDISRFGMERFSATPRQADL 69

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
           MIVAG ++ KMA  LR++YDQM EP++V++MG CA+ GG ++ +Y++V+G D +VPVDIY
Sbjct: 70  MIVAGRVSQKMAPVLRQIYDQMAEPKWVLAMGVCASSGGMFN-NYAIVQGVDHVVPVDIY 128

Query: 156 VPGCPPTAEALIYGILLLQKKIRRV 180
           +PGCPP  E L++ I+ L +KI+++
Sbjct: 129 LPGCPPRPEMLLHAIIKLHEKIQQM 153


>gi|54024635|ref|YP_118877.1| NADH dehydrogenase subunit B [Nocardia farcinica IFM 10152]
 gi|81602742|sp|Q5YWC8|NUOB_NOCFA RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|54016143|dbj|BAD57513.1| putative NADH dehydrogenase I chain B [Nocardia farcinica IFM
           10152]
          Length = 184

 Score =  163 bits (413), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 79/150 (52%), Positives = 107/150 (71%), Gaps = 2/150 (1%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APRAS 89
            E    GFL+++V+    + R GS+   TFGLACCA+EMM     R+D+ RFG  A RAS
Sbjct: 4   EEKLPSGFLLSTVESFAGYLRKGSVWPATFGLACCAIEMMATGAGRFDIARFGMEAFRAS 63

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQ+D+MIVAG ++ KMA  LR+VYDQM EP++V++MG CA+ GG ++ +Y+VV+G D +
Sbjct: 64  PRQADLMIVAGRVSQKMAPVLRQVYDQMAEPKWVLAMGVCASSGGMFN-NYAVVQGVDHV 122

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           VPVDIY+PGCPP  E L+  IL L  KI+ 
Sbjct: 123 VPVDIYLPGCPPRPEMLLNAILALHDKIQH 152


>gi|116624397|ref|YP_826553.1| NADH dehydrogenase subunit B [Candidatus Solibacter usitatus
           Ellin6076]
 gi|122252953|sp|Q01VP7|NUOB2_SOLUE RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName:
           Full=NADH dehydrogenase I subunit B 2; AltName:
           Full=NDH-1 subunit B 2
 gi|116227559|gb|ABJ86268.1| NADH-quinone oxidoreductase, B subunit [Candidatus Solibacter
           usitatus Ellin6076]
          Length = 184

 Score =  163 bits (413), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 75/151 (49%), Positives = 112/151 (74%), Gaps = 4/151 (2%)

Query: 36  KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSD 94
           +G ++T++D  V WAR  S+  MTFGLACCA+EMM  S  R+D+ RFG    R SPRQSD
Sbjct: 31  EGIVMTTLDAAVNWARKNSIWPMTFGLACCAIEMMSMSASRFDIARFGAEVFRGSPRQSD 90

Query: 95  VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154
           +MI+AG ++NKMA  +R +Y QMPEP++ ISMG+CA   G ++ +Y+++   ++++P+D+
Sbjct: 91  LMIIAGRVSNKMAPVIRHLYQQMPEPKWAISMGACATSTGVFN-NYALI-PVNQVIPIDV 148

Query: 155 YVPGCPPTAEALIYGILLLQKKIR-RVGNVK 184
           +VPGCPP  E LIY +++LQ+KI+ + G VK
Sbjct: 149 FVPGCPPRPEQLIYALMMLQEKIKNQSGTVK 179


>gi|254821135|ref|ZP_05226136.1| NADH dehydrogenase subunit B [Mycobacterium intracellulare ATCC
           13950]
          Length = 184

 Score =  163 bits (412), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 74/145 (51%), Positives = 109/145 (75%), Gaps = 2/145 (1%)

Query: 37  GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95
           G L+++V+++  + R  SL   TFGLACCA+EMM  + PR+D+ RFG     A+PRQ+D+
Sbjct: 10  GILLSTVEKVAGYVRKNSLWPATFGLACCAIEMMATAGPRFDIARFGMERFSATPRQADL 69

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
           MIVAG ++ KMA  LR++YDQM EP++V++MG CA+ GG ++ +Y++V+G D +VPVDIY
Sbjct: 70  MIVAGRVSQKMAPVLRQIYDQMAEPKWVLAMGVCASSGGMFN-NYAIVQGVDHVVPVDIY 128

Query: 156 VPGCPPTAEALIYGILLLQKKIRRV 180
           +PGCPP  E L+Y IL L +KI+ +
Sbjct: 129 LPGCPPRPEMLLYAILKLHEKIQEM 153


>gi|313202843|ref|YP_004041500.1| NADH dehydrogenase subunit b [Paludibacter propionicigenes WB4]
 gi|312442159|gb|ADQ78515.1| NADH dehydrogenase subunit B [Paludibacter propionicigenes WB4]
          Length = 194

 Score =  163 bits (412), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 68/141 (48%), Positives = 104/141 (73%), Gaps = 1/141 (0%)

Query: 39  LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APRASPRQSDVMI 97
           +++ +D+L+ W R+ S+  + +  +CC +E M ++   +D+ RFG    R SPRQ+D+MI
Sbjct: 44  VLSKIDELINWGRSNSVWPLIYATSCCGIEFMASAAAHHDISRFGMEVTRNSPRQADLMI 103

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGT+ +KMA  ++RVYDQM EP+YV++MG+CA  GG +  SY VV G D+I+PVD+Y+P
Sbjct: 104 VAGTMVHKMAPLIKRVYDQMAEPKYVVAMGACAISGGPFVNSYHVVPGVDQIIPVDVYIP 163

Query: 158 GCPPTAEALIYGILLLQKKIR 178
           GCPP  E+L YG++ LQ+KI+
Sbjct: 164 GCPPRPESLFYGLMQLQRKIK 184


>gi|72163093|ref|YP_290750.1| NADH dehydrogenase subunit B [Thermobifida fusca YX]
 gi|123628754|sp|Q47LE5|NUOB_THEFY RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|71916825|gb|AAZ56727.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit [Thermobifida fusca
           YX]
          Length = 185

 Score =  163 bits (412), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 77/143 (53%), Positives = 106/143 (74%), Gaps = 2/143 (1%)

Query: 37  GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95
           G L+T+V+Q+V + R  S+   TFGLACCA+EMM A  PR+D+ RFG     A+PRQ+D+
Sbjct: 10  GVLLTTVEQIVGFVRKTSMWPATFGLACCAIEMMAAGGPRFDIARFGMERFSATPRQADL 69

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
           MIVAG ++ KMA  LR +YDQM EP++VI+MG CA+ GG ++ +Y++V+G D IVPVDIY
Sbjct: 70  MIVAGRVSQKMAPVLRTIYDQMAEPKWVIAMGVCASSGGMFN-NYAIVQGVDHIVPVDIY 128

Query: 156 VPGCPPTAEALIYGILLLQKKIR 178
           +PGCPP  E L+  IL L  K++
Sbjct: 129 LPGCPPRPEMLLDAILKLHDKVQ 151


>gi|187736633|ref|YP_001878745.1| NADH-quinone oxidoreductase, B subunit [Akkermansia muciniphila
           ATCC BAA-835]
 gi|238065050|sp|B2UPT6|NUOB_AKKM8 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|187426685|gb|ACD05964.1| NADH-quinone oxidoreductase, B subunit [Akkermansia muciniphila
           ATCC BAA-835]
          Length = 193

 Score =  162 bits (411), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 76/142 (53%), Positives = 105/142 (73%), Gaps = 2/142 (1%)

Query: 37  GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APRASPRQSDV 95
            F+ T++D  + W R  SL  M  GL+CCA+E M  +  RYDL RFG    R SPRQ+DV
Sbjct: 22  NFVYTTLDAAINWIRKNSLWPMPMGLSCCAIEFMAVACSRYDLSRFGSEVTRFSPRQADV 81

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
           MIVAGT+T KMA A+RR++DQMPEP++ I+MG+CA+ GG +  SYSV++G D+I+PVD+Y
Sbjct: 82  MIVAGTVTYKMALAVRRIWDQMPEPKWCIAMGACASTGGMFR-SYSVLQGVDKILPVDVY 140

Query: 156 VPGCPPTAEALIYGILLLQKKI 177
           + GCPP  EA++  +L L+KK+
Sbjct: 141 ISGCPPRPEAILEALLTLRKKL 162


>gi|90579190|ref|ZP_01235000.1| NADH dehydrogenase beta subunit [Vibrio angustum S14]
 gi|90440023|gb|EAS65204.1| NADH dehydrogenase beta subunit [Vibrio angustum S14]
          Length = 183

 Score =  162 bits (411), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 77/141 (54%), Positives = 104/141 (73%), Gaps = 2/141 (1%)

Query: 39  LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMI 97
           +V  VD L++++R  SL    FG +CC VEMM A+ PRYD+ RFG    R SPRQSDV+I
Sbjct: 25  IVGKVDDLISYSRKHSLWPYNFGTSCCFVEMMTAATPRYDMARFGSEVLRGSPRQSDVLI 84

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
            AGT   KMA  ++ +YDQM EP++VISMGSC+N GG Y   YSVV+G D+I+PVD+YVP
Sbjct: 85  TAGTCFVKMAPLMKHIYDQMLEPKWVISMGSCSNSGGMYDI-YSVVQGVDKILPVDVYVP 143

Query: 158 GCPPTAEALIYGILLLQKKIR 178
           GCPP  +AL+ G+++LQ+ ++
Sbjct: 144 GCPPRPDALLEGLIMLQEHVQ 164


>gi|51892725|ref|YP_075416.1| NADH dehydrogenase I subunit B [Symbiobacterium thermophilum IAM
           14863]
 gi|51856414|dbj|BAD40572.1| NADH dehydrogenase I subunit B [Symbiobacterium thermophilum IAM
           14863]
          Length = 153

 Score =  162 bits (411), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 74/143 (51%), Positives = 111/143 (77%), Gaps = 3/143 (2%)

Query: 39  LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQ-ASMPRYDLERFGF-APRASPRQSDVM 96
           + T+VD  + WA++ S+  +TFGLACCA+EMM  AS PRYD+ RFG  A RASPRQ+D++
Sbjct: 1   MTTTVDSFLRWAQSNSIWPLTFGLACCAIEMMNLASGPRYDIARFGSEAFRASPRQADLI 60

Query: 97  IVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV 156
            ++G ++NKMA  ++RVY QM EP++V++ G+CA+ GG +  +Y++++G D ++PVDIYV
Sbjct: 61  FISGRVSNKMAPVIKRVYSQMLEPKWVVAFGACASSGGIFD-NYAIMQGVDNLLPVDIYV 119

Query: 157 PGCPPTAEALIYGILLLQKKIRR 179
           PGCPPT EA+IY +  L+ +IR+
Sbjct: 120 PGCPPTPEAVIYAVQKLRDRIRK 142


>gi|257077079|ref|ZP_05571440.1| NADH dehydrogenase subunit B [Ferroplasma acidarmanus fer1]
          Length = 157

 Score =  162 bits (411), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 76/143 (53%), Positives = 102/143 (71%), Gaps = 1/143 (0%)

Query: 37  GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95
           G   T++++ + W R+ SL  +T GLACCA+EMM       D+ RFG    R SPRQSD+
Sbjct: 10  GVKTTTLEKALQWGRSNSLWPLTMGLACCAIEMMATQAADLDMARFGSEIFRNSPRQSDL 69

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
           MIVAGT T +MA  ++R+Y++MP P+YVI+MG C   GG Y   YSVV G D+++PVD+Y
Sbjct: 70  MIVAGTTTKRMAPRVKRIYEEMPYPKYVIAMGVCVIQGGPYVDGYSVVLGVDKVIPVDVY 129

Query: 156 VPGCPPTAEALIYGILLLQKKIR 178
           VPGCPP+ +AL YG++ LQKKIR
Sbjct: 130 VPGCPPSPQALTYGLITLQKKIR 152


>gi|89073316|ref|ZP_01159846.1| NADH dehydrogenase beta subunit [Photobacterium sp. SKA34]
 gi|89051026|gb|EAR56490.1| NADH dehydrogenase beta subunit [Photobacterium sp. SKA34]
          Length = 183

 Score =  162 bits (411), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 77/141 (54%), Positives = 104/141 (73%), Gaps = 2/141 (1%)

Query: 39  LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMI 97
           +V  VD L++++R  SL    FG +CC VEMM A+ PRYD+ RFG    R SPRQSDV+I
Sbjct: 25  IVGKVDDLISYSRKHSLWPYNFGTSCCFVEMMTAATPRYDMARFGSEVLRGSPRQSDVLI 84

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
            AGT   KMA  ++ +YDQM EP++VISMGSC+N GG Y   YSVV+G D+I+PVD+YVP
Sbjct: 85  TAGTCFVKMAPLMKHIYDQMLEPKWVISMGSCSNSGGMYDI-YSVVQGVDKILPVDVYVP 143

Query: 158 GCPPTAEALIYGILLLQKKIR 178
           GCPP  +AL+ G+++LQ+ ++
Sbjct: 144 GCPPRPDALLEGLIMLQEHVQ 164


>gi|323702663|ref|ZP_08114324.1| NADH-quinone oxidoreductase, B subunit [Desulfotomaculum
           nigrificans DSM 574]
 gi|323532326|gb|EGB22204.1| NADH-quinone oxidoreductase, B subunit [Desulfotomaculum
           nigrificans DSM 574]
          Length = 203

 Score =  162 bits (410), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 85/161 (52%), Positives = 117/161 (72%), Gaps = 4/161 (2%)

Query: 19  LEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVE-MMQASMPRY 77
           L+K+ AD + I  E+T K   V  +++L+  AR  SL  + FGLACCA+E +M A+M R+
Sbjct: 36  LKKIGADPAVIG-EVT-KTVSVGPLEKLLNLARANSLWPLGFGLACCAIEGLMAANMARF 93

Query: 78  DLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY 136
           DL RFG+   RASPRQ+DVMIV GT+T K A  + R+Y+QM EP+YVI+MGSCA  GG +
Sbjct: 94  DLSRFGYEVMRASPRQADVMIVCGTVTKKAAPFVVRLYEQMAEPKYVIAMGSCAISGGPF 153

Query: 137 HYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
             SY+VV G D+++PVD+Y+PGCPP  +ALI+  L L++KI
Sbjct: 154 VDSYAVVPGVDKLIPVDVYLPGCPPRPDALIHAFLKLKEKI 194


>gi|189218226|ref|YP_001938868.1| NADH dehydrogenase subunit B [Methylacidiphilum infernorum V4]
 gi|238065168|sp|B3DXN5|NUOB_METI4 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|189185084|gb|ACD82269.1| NADH:ubiquinone oxidoreductase 20 kD subunit or related Fe-S
           oxidoreductase [Methylacidiphilum infernorum V4]
          Length = 170

 Score =  162 bits (410), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 76/147 (51%), Positives = 110/147 (74%), Gaps = 2/147 (1%)

Query: 39  LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMI 97
           +VT +D  + W R  SL  M  GLACCA+E+M ++  R+D+ RFG    R SPRQ DVMI
Sbjct: 18  VVTRLDAAINWMRKNSLWPMPMGLACCAIELMASACARFDISRFGAEVMRFSPRQCDVMI 77

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGT+T KMA +++R+Y+QMP+P++VISMG+CA+ GG Y  SYSV++G D+++PVD+YV 
Sbjct: 78  VAGTVTYKMAYSVKRIYEQMPDPKWVISMGACASSGGMYR-SYSVLQGIDQLIPVDVYVS 136

Query: 158 GCPPTAEALIYGILLLQKKIRRVGNVK 184
           GCPP  EAL+  ++ LQ+KI +  +++
Sbjct: 137 GCPPRPEALLDALIKLQEKIDKEASLR 163


>gi|42524476|ref|NP_969856.1| NADH dehydrogenase I chain B [Bdellovibrio bacteriovorus HD100]
 gi|81616434|sp|Q6MIR4|NUOB_BDEBA RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|39576685|emb|CAE80849.1| NADH dehydrogenase I chain B [Bdellovibrio bacteriovorus HD100]
          Length = 187

 Score =  162 bits (410), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 82/172 (47%), Positives = 114/172 (66%), Gaps = 12/172 (6%)

Query: 8   QKIISGQSSCSLEKVDADFSRISSEITHKGFLVTS-VDQLVTWARTGSLMWMTFGLACCA 66
           Q ++S       + VD D SR        GF  TS +D +V W R  SL  M +G ACC 
Sbjct: 7   QGLVSHDGMTGTQAVD-DMSR--------GFAFTSKLDAIVAWGRKNSLWPMPYGTACCG 57

Query: 67  VEMMQASMPRYDLERFGF-APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVIS 125
           +E M    P+YDL RFG    R SPRQ+D+++VAGT+T KMA  + R+Y QM EP+YV+S
Sbjct: 58  IEFMSVMGPKYDLARFGAEVARFSPRQADLLVVAGTITEKMAPVIVRIYQQMLEPKYVLS 117

Query: 126 MGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
           MG+CA+ GG+Y  +Y V++G D+++PVD+Y+PGCPPT EA++ GI+ LQ+ I
Sbjct: 118 MGACASSGGFYR-AYHVLQGVDKVIPVDVYIPGCPPTPEAVMDGIMALQRMI 168


>gi|261416729|ref|YP_003250412.1| NADH-quinone oxidoreductase, B subunit [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|261373185|gb|ACX75930.1| NADH-quinone oxidoreductase, B subunit [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|302325376|gb|ADL24577.1| NADH-quinone oxidoreductase, B/C subunit [Fibrobacter succinogenes
           subsp. succinogenes S85]
          Length = 419

 Score =  162 bits (410), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 74/152 (48%), Positives = 112/152 (73%), Gaps = 2/152 (1%)

Query: 28  RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP- 86
           +I   I    ++V ++D +V WAR  S+  +T+G +CCA+EMM +SM RYD+ RFG    
Sbjct: 9   KILDPIPGGKYVVNAIDYVVNWARANSIWPLTYGTSCCAIEMMSSSMARYDIARFGSEVF 68

Query: 87  RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRG 145
           R+SPRQ+D+ I+AGT+T +MA A++ +++Q+P P+YVI+MG+C   GG + Y +YSVVRG
Sbjct: 69  RSSPRQADLFILAGTITRRMAPAIQMLWEQIPGPKYVIAMGACTISGGPFIYDNYSVVRG 128

Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
              ++PVD++VPGCPP  EAL +G+L L++KI
Sbjct: 129 AQNLIPVDVFVPGCPPRPEALFHGLLTLREKI 160


>gi|118467443|ref|YP_886423.1| NADH dehydrogenase subunit B [Mycobacterium smegmatis str. MC2 155]
 gi|238065179|sp|A0QU35|NUOB_MYCS2 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|118168730|gb|ABK69626.1| NADH-quinone oxidoreductase, B subunit [Mycobacterium smegmatis
           str. MC2 155]
          Length = 184

 Score =  162 bits (410), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 75/145 (51%), Positives = 109/145 (75%), Gaps = 2/145 (1%)

Query: 37  GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95
           G L+++V+ +  + R GSL   TFGLACCA+EMM  + PR+D+ RFG     A+PRQ+D+
Sbjct: 10  GILLSTVETVAGYVRKGSLWPATFGLACCAIEMMSTAGPRFDIARFGMERFSATPRQADL 69

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
           MIVAG ++ KMA  LR++YDQM EP++V++MG CA+ GG ++ +Y+VV+G D +VPVDIY
Sbjct: 70  MIVAGRVSQKMAPVLRQIYDQMVEPKWVLAMGVCASSGGMFN-NYAVVQGVDHVVPVDIY 128

Query: 156 VPGCPPTAEALIYGILLLQKKIRRV 180
           +PGCPP  E L++ IL L  KI+++
Sbjct: 129 LPGCPPRPEMLLHAILKLHDKIQQM 153


>gi|311744393|ref|ZP_07718195.1| NADH-quinone oxidoreductase subunit B [Aeromicrobium marinum DSM
           15272]
 gi|311312359|gb|EFQ82274.1| NADH-quinone oxidoreductase subunit B [Aeromicrobium marinum DSM
           15272]
          Length = 184

 Score =  162 bits (409), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 78/149 (52%), Positives = 104/149 (69%), Gaps = 2/149 (1%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RAS 89
            E    G L+++V+ L  + R  S    TFGLACCA+EMM    PRYD  RFG    R S
Sbjct: 4   EEKLPSGVLLSTVEDLAGYFRKASFWPATFGLACCAIEMMTFGAPRYDSSRFGMEVFRPS 63

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQ+D+MIVAG ++NKMA  LR++YDQM EP+YV++MG CA+ GG ++ +Y++V+G D +
Sbjct: 64  PRQADLMIVAGRVSNKMAPVLRQIYDQMAEPKYVLAMGVCASSGGMFN-NYAIVQGVDHV 122

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           VPVD+Y+PGCPP  E LI  IL L  KI+
Sbjct: 123 VPVDMYLPGCPPRPEMLIDAILKLHDKIQ 151


>gi|298674246|ref|YP_003725996.1| NADH-quinone oxidoreductase subunit B [Methanohalobium evestigatum
           Z-7303]
 gi|298287234|gb|ADI73200.1| NADH-quinone oxidoreductase, B subunit [Methanohalobium evestigatum
           Z-7303]
          Length = 189

 Score =  162 bits (409), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 71/137 (51%), Positives = 94/137 (68%)

Query: 41  TSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAG 100
           T V  ++ W R  SL +MT  + CC VEM+      YD +RFG  PR SPRQ+DVMI++G
Sbjct: 40  TKVQDIINWGRKNSLWFMTQPMGCCGVEMIATGCAHYDTDRFGIIPRNSPRQADVMIISG 99

Query: 101 TLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCP 160
            +T K   AL++VY+QMP P++VI+MG CA  GG ++ SYS V+  D I P+D+Y+PGCP
Sbjct: 100 YVTKKYFPALKKVYEQMPSPKWVIAMGDCAISGGPFYESYSTVQNIDEIFPIDVYIPGCP 159

Query: 161 PTAEALIYGILLLQKKI 177
           P  EALI G + LQKKI
Sbjct: 160 PRPEALIQGFVELQKKI 176


>gi|240169669|ref|ZP_04748328.1| NADH dehydrogenase subunit B [Mycobacterium kansasii ATCC 12478]
          Length = 184

 Score =  162 bits (409), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 74/145 (51%), Positives = 109/145 (75%), Gaps = 2/145 (1%)

Query: 37  GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95
           G L+++V+++  + R  SL   TFGLACCA+EMM  + PR+DL RFG     A+PRQ+D+
Sbjct: 10  GILLSTVEKVAGYVRKNSLWPATFGLACCAIEMMATAGPRFDLARFGMERFSATPRQADL 69

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
           MIVAG ++ KMA  LR++YDQM EP++V++MG CA+ GG ++ +Y++V+G D +VPVDIY
Sbjct: 70  MIVAGRVSQKMAPVLRQIYDQMAEPKWVLAMGVCASSGGMFN-NYAIVQGVDHVVPVDIY 128

Query: 156 VPGCPPTAEALIYGILLLQKKIRRV 180
           +PGCPP  E L++ IL L +KI+ +
Sbjct: 129 LPGCPPRPEMLLHAILKLHEKIQEM 153


>gi|229821708|ref|YP_002883234.1| NADH-quinone oxidoreductase, B subunit [Beutenbergia cavernae DSM
           12333]
 gi|259514655|sp|C5C0S6|NUOB_BEUC1 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|229567621|gb|ACQ81472.1| NADH-quinone oxidoreductase, B subunit [Beutenbergia cavernae DSM
           12333]
          Length = 184

 Score =  161 bits (408), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 78/149 (52%), Positives = 105/149 (70%), Gaps = 2/149 (1%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RAS 89
            E    GF++  V  LV   R  SL  +T GLACCA+EMM    PR+D+ RFG    RAS
Sbjct: 4   EEKAPSGFMLAKVSDLVGLIRKSSLWPVTMGLACCAIEMMATGTPRFDISRFGMEVFRAS 63

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQ+D+MIV+G ++ KMA  +R+VYDQM EP++V+SMG CA+ GG ++ +Y+VV+G D I
Sbjct: 64  PRQADLMIVSGRVSQKMAPVVRQVYDQMSEPKWVLSMGVCASSGGMFN-NYAVVQGVDHI 122

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           +PVDIY+PGCPP  E L+  IL L ++IR
Sbjct: 123 LPVDIYLPGCPPRPEMLLNAILELHEQIR 151


>gi|325298883|ref|YP_004258800.1| NAD(P)H-quinone oxidoreductase subunit K [Bacteroides salanitronis
           DSM 18170]
 gi|324318436|gb|ADY36327.1| NAD(P)H-quinone oxidoreductase subunit K [Bacteroides salanitronis
           DSM 18170]
          Length = 205

 Score =  161 bits (408), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 67/143 (46%), Positives = 102/143 (71%), Gaps = 1/143 (0%)

Query: 37  GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APRASPRQSDV 95
           G ++T+ D+L+ W R+ S+  +  G +CCA+E M     RYD+ RFGF   R SPRQ+DV
Sbjct: 33  GVILTTFDELINWGRSNSVWGLLLGTSCCAIEFMALGAARYDMARFGFEVTRNSPRQADV 92

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
           ++V GT+T + A  ++R+YDQM EP+YV+++G C   GG +  SY+VV G D+++PVD+Y
Sbjct: 93  LVVMGTITYRTAPVMKRLYDQMAEPKYVVAVGGCTISGGPFIKSYNVVNGIDKVIPVDVY 152

Query: 156 VPGCPPTAEALIYGILLLQKKIR 178
           +PGCPP  EA  YG++ LQ+K++
Sbjct: 153 IPGCPPRPEAFYYGLMQLQRKMK 175


>gi|34501411|ref|NP_904198.1| NADH dehydrogenase subunit K [Physcomitrella patens subsp. patens]
 gi|75294073|sp|Q6YXQ9|NDHK_PHYPA RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
 gi|34494781|dbj|BAC85048.1| NADH dehydrogenase 27 kD subunit [Physcomitrella patens subsp.
           patens]
          Length = 261

 Score =  161 bits (408), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 71/150 (47%), Positives = 103/150 (68%), Gaps = 1/150 (0%)

Query: 29  ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88
            S++      ++T+ +    WAR  SL  + +G +CC +E       R+D +R+G  PR+
Sbjct: 29  FSNQENPNSVILTTFNDFTNWARLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRS 88

Query: 89  SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCD 147
           SPRQ+D++I AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D
Sbjct: 89  SPRQADLIITAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVD 148

Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
           +++PVDIY+PGCPP  EA+I  I+ L+KKI
Sbjct: 149 KLIPVDIYLPGCPPKPEAIIDAIIKLRKKI 178


>gi|75908080|ref|YP_322376.1| NADH dehydrogenase subunit B [Anabaena variabilis ATCC 29413]
 gi|6685694|sp|Q9XBL7|NDHK_ANAVT RecName: Full=NAD(P)H-quinone oxidoreductase subunit K; AltName:
           Full=NAD(P)H dehydrogenase I subunit K; AltName:
           Full=NDH-1 subunit K; Short=NDH-K
 gi|5139342|emb|CAB45647.1| NDH-K protein [Anabaena variabilis]
 gi|75701805|gb|ABA21481.1| NADH dehydrogenase subunit B [Anabaena variabilis ATCC 29413]
          Length = 245

 Score =  161 bits (407), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 73/143 (51%), Positives = 101/143 (70%), Gaps = 1/143 (0%)

Query: 36  KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDV 95
           +  ++T+VD L  WAR  SL  + FG ACC +E       R+D +RFG  PR+SPRQ+D+
Sbjct: 30  ENVILTTVDDLYNWARLSSLWPLLFGTACCFIEFAALIGSRFDFDRFGLIPRSSPRQADL 89

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPVDI 154
           +I AGT+T KMA  L R+Y+QMPEP+YVI+MG+C   GG +   S + VRG D+++PVD+
Sbjct: 90  IITAGTITMKMAPQLVRLYEQMPEPKYVIAMGACTITGGMFSVDSPTAVRGVDKLIPVDV 149

Query: 155 YVPGCPPTAEALIYGILLLQKKI 177
           Y+PGCPP  EA+I  I+ L+KKI
Sbjct: 150 YLPGCPPRPEAIIDAIIKLRKKI 172


>gi|15610282|ref|NP_217662.1| NADH dehydrogenase subunit B [Mycobacterium tuberculosis H37Rv]
 gi|15842722|ref|NP_337759.1| NADH dehydrogenase subunit B [Mycobacterium tuberculosis CDC1551]
 gi|31794322|ref|NP_856815.1| NADH dehydrogenase subunit B [Mycobacterium bovis AF2122/97]
 gi|121639029|ref|YP_979253.1| NADH dehydrogenase subunit B [Mycobacterium bovis BCG str. Pasteur
           1173P2]
 gi|148663001|ref|YP_001284524.1| NADH dehydrogenase subunit B [Mycobacterium tuberculosis H37Ra]
 gi|148824340|ref|YP_001289094.1| NADH dehydrogenase subunit B [Mycobacterium tuberculosis F11]
 gi|167970182|ref|ZP_02552459.1| NADH dehydrogenase subunit B [Mycobacterium tuberculosis H37Ra]
 gi|215405144|ref|ZP_03417325.1| NADH dehydrogenase subunit B [Mycobacterium tuberculosis 02_1987]
 gi|215432105|ref|ZP_03430024.1| NADH dehydrogenase subunit B [Mycobacterium tuberculosis EAS054]
 gi|215447436|ref|ZP_03434188.1| NADH dehydrogenase subunit B [Mycobacterium tuberculosis T85]
 gi|218754926|ref|ZP_03533722.1| NADH dehydrogenase subunit B [Mycobacterium tuberculosis GM 1503]
 gi|219559192|ref|ZP_03538268.1| NADH dehydrogenase subunit B [Mycobacterium tuberculosis T17]
 gi|224991521|ref|YP_002646210.1| NADH dehydrogenase subunit B [Mycobacterium bovis BCG str. Tokyo
           172]
 gi|253800180|ref|YP_003033181.1| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis KZN
           1435]
 gi|254233766|ref|ZP_04927091.1| NADH dehydrogenase I (chain B) nuoB (NADH-ubiquinone oxidoreductase
           chain B) [Mycobacterium tuberculosis C]
 gi|254365771|ref|ZP_04981816.1| NADH dehydrogenase I (chain B) nuoB (NADH-ubiquinone oxidoreductase
           chain B) [Mycobacterium tuberculosis str. Haarlem]
 gi|254552237|ref|ZP_05142684.1| NADH dehydrogenase subunit B [Mycobacterium tuberculosis '98-R604
           INH-RIF-EM']
 gi|260188187|ref|ZP_05765661.1| NADH dehydrogenase subunit B [Mycobacterium tuberculosis CPHL_A]
 gi|260202292|ref|ZP_05769783.1| NADH dehydrogenase subunit B [Mycobacterium tuberculosis T46]
 gi|260206485|ref|ZP_05773976.1| NADH dehydrogenase subunit B [Mycobacterium tuberculosis K85]
 gi|289444710|ref|ZP_06434454.1| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis
           T46]
 gi|289448826|ref|ZP_06438570.1| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis
           CPHL_A]
 gi|289555419|ref|ZP_06444629.1| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis KZN
           605]
 gi|289571357|ref|ZP_06451584.1| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis
           T17]
 gi|289575858|ref|ZP_06456085.1| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis
           K85]
 gi|289746955|ref|ZP_06506333.1| NADH dehydrogenase subunit beta [Mycobacterium tuberculosis
           02_1987]
 gi|289755265|ref|ZP_06514643.1| NADH dehydrogenase subunit B [Mycobacterium tuberculosis EAS054]
 gi|289759276|ref|ZP_06518654.1| NADH dehydrogenase subunit B [Mycobacterium tuberculosis T85]
 gi|289763329|ref|ZP_06522707.1| NADH dehydrogenase I (chain B) nuoB (NADH-ubiquinone oxidoreductase
           chain B) [Mycobacterium tuberculosis GM 1503]
 gi|294993125|ref|ZP_06798816.1| NADH dehydrogenase subunit B [Mycobacterium tuberculosis 210]
 gi|297635789|ref|ZP_06953569.1| NADH dehydrogenase subunit B [Mycobacterium tuberculosis KZN 4207]
 gi|297732786|ref|ZP_06961904.1| NADH dehydrogenase subunit B [Mycobacterium tuberculosis KZN R506]
 gi|306794900|ref|ZP_07433202.1| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis
           SUMu005]
 gi|306973581|ref|ZP_07486242.1| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis
           SUMu010]
 gi|307085892|ref|ZP_07495005.1| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis
           SUMu012]
 gi|313660119|ref|ZP_07816999.1| NADH dehydrogenase subunit B [Mycobacterium tuberculosis KZN V2475]
 gi|54037922|sp|P65576|NUOB_MYCBO RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|54041673|sp|P65575|NUOB_MYCTU RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|238065176|sp|A1KNE2|NUOB_MYCBP RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|238065181|sp|A5U7G2|NUOB_MYCTA RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|254767796|sp|C1AGR3|NUOB_MYCBT RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|1781222|emb|CAB06270.1| PROBABLE NADH DEHYDROGENASE I (CHAIN B) NUOB (NADH-UBIQUINONE
           OXIDOREDUCTASE CHAIN B) [Mycobacterium tuberculosis
           H37Rv]
 gi|13883044|gb|AAK47573.1| NADH dehydrogenase I, B subunit [Mycobacterium tuberculosis
           CDC1551]
 gi|31619918|emb|CAD95262.1| PROBABLE NADH DEHYDROGENASE I (CHAIN B) NUOB (NADH-UBIQUINONE
           OXIDOREDUCTASE CHAIN B) [Mycobacterium bovis AF2122/97]
 gi|121494677|emb|CAL73158.1| Probable NADH dehydrogenase I (chain B) nuoB [Mycobacterium bovis
           BCG str. Pasteur 1173P2]
 gi|124599295|gb|EAY58399.1| NADH dehydrogenase I (chain B) nuoB (NADH-ubiquinone oxidoreductase
           chain B) [Mycobacterium tuberculosis C]
 gi|134151284|gb|EBA43329.1| NADH dehydrogenase I (chain B) nuoB (NADH-ubiquinone oxidoreductase
           chain B) [Mycobacterium tuberculosis str. Haarlem]
 gi|148507153|gb|ABQ74962.1| NADH dehydrogenase subunit beta [Mycobacterium tuberculosis H37Ra]
 gi|148722867|gb|ABR07492.1| NADH dehydrogenase I chain B nuoB (NADH-ubiquinone oxidoreductase
           chain B) [Mycobacterium tuberculosis F11]
 gi|224774636|dbj|BAH27442.1| NADH dehydrogenase subunit B [Mycobacterium bovis BCG str. Tokyo
           172]
 gi|253321683|gb|ACT26286.1| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis KZN
           1435]
 gi|289417629|gb|EFD14869.1| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis
           T46]
 gi|289421784|gb|EFD18985.1| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis
           CPHL_A]
 gi|289440051|gb|EFD22544.1| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis KZN
           605]
 gi|289540289|gb|EFD44867.1| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis
           K85]
 gi|289545111|gb|EFD48759.1| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis
           T17]
 gi|289687483|gb|EFD54971.1| NADH dehydrogenase subunit beta [Mycobacterium tuberculosis
           02_1987]
 gi|289695852|gb|EFD63281.1| NADH dehydrogenase subunit B [Mycobacterium tuberculosis EAS054]
 gi|289710835|gb|EFD74851.1| NADH dehydrogenase I (chain B) nuoB (NADH-ubiquinone oxidoreductase
           chain B) [Mycobacterium tuberculosis GM 1503]
 gi|289714840|gb|EFD78852.1| NADH dehydrogenase subunit B [Mycobacterium tuberculosis T85]
 gi|308336686|gb|EFP25537.1| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis
           SUMu005]
 gi|308357065|gb|EFP45916.1| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis
           SUMu010]
 gi|308364627|gb|EFP53478.1| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis
           SUMu012]
 gi|323718234|gb|EGB27414.1| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis
           CDC1551A]
 gi|326902630|gb|EGE49563.1| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis
           W-148]
 gi|328459917|gb|AEB05340.1| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis KZN
           4207]
          Length = 184

 Score =  161 bits (407), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 73/145 (50%), Positives = 110/145 (75%), Gaps = 2/145 (1%)

Query: 37  GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95
           G L+++V+++  + R  SL   TFGLACCA+EMM  + PR+D+ RFG     A+PRQ+D+
Sbjct: 10  GILLSTVEKVAGYVRKNSLWPATFGLACCAIEMMATAGPRFDIARFGMERFSATPRQADL 69

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
           MIVAG ++ KMA  LR++YDQM EP++V++MG CA+ GG ++ +Y++V+G D +VPVDIY
Sbjct: 70  MIVAGRVSQKMAPVLRQIYDQMAEPKWVLAMGVCASSGGMFN-NYAIVQGVDHVVPVDIY 128

Query: 156 VPGCPPTAEALIYGILLLQKKIRRV 180
           +PGCPP  E L++ IL L +KI+++
Sbjct: 129 LPGCPPRPEMLLHAILKLHEKIQQM 153


>gi|124024214|ref|YP_001018521.1| NADH dehydrogenase subunit B [Prochlorococcus marinus str. MIT
           9303]
 gi|218527919|sp|A2CCP6|NDHK_PROM3 RecName: Full=NAD(P)H-quinone oxidoreductase subunit K; AltName:
           Full=NAD(P)H dehydrogenase I subunit K; AltName:
           Full=NDH-1 subunit K; Short=NDH-K
 gi|123964500|gb|ABM79256.1| putative respiratory-chain NADH dehydrogenase subunit
           [Prochlorococcus marinus str. MIT 9303]
          Length = 250

 Score =  161 bits (407), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 73/150 (48%), Positives = 108/150 (72%), Gaps = 2/150 (1%)

Query: 29  ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88
           ++SE++ +  ++TS+D L  WAR  SL  + +G ACC +E       R+D +RFG  PR+
Sbjct: 26  VTSELS-ENIILTSLDDLHNWARLSSLWPLLYGTACCFIEFAALIGSRFDFDRFGLVPRS 84

Query: 89  SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCD 147
           SPRQ+D++IVAGT+T KMA AL R+Y+QMPEP+YVI+MG+C   GG +   S + VRG D
Sbjct: 85  SPRQADLLIVAGTVTMKMAPALVRLYEQMPEPKYVIAMGACTITGGMFSADSTTAVRGVD 144

Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
           +++PVD+Y+PGCPP  EA+   ++ L+KK+
Sbjct: 145 KLIPVDLYLPGCPPRPEAIFDAVIKLRKKV 174


>gi|215413013|ref|ZP_03421714.1| NADH dehydrogenase subunit B [Mycobacterium tuberculosis 94_M4241A]
 gi|298526620|ref|ZP_07014029.1| NADH dehydrogenase I, B subunit [Mycobacterium tuberculosis
           94_M4241A]
 gi|298496414|gb|EFI31708.1| NADH dehydrogenase I, B subunit [Mycobacterium tuberculosis
           94_M4241A]
          Length = 184

 Score =  161 bits (407), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 73/145 (50%), Positives = 110/145 (75%), Gaps = 2/145 (1%)

Query: 37  GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95
           G L+++V+++  + R  SL   TFGLACCA+EMM  + PR+D+ RFG     A+PRQ+D+
Sbjct: 10  GILLSNVEKVAGYVRKNSLWPATFGLACCAIEMMATAGPRFDIARFGMERFSATPRQADL 69

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
           MIVAG ++ KMA  LR++YDQM EP++V++MG CA+ GG ++ +Y++V+G D +VPVDIY
Sbjct: 70  MIVAGRVSQKMAPVLRQIYDQMAEPKWVLAMGVCASSGGMFN-NYAIVQGVDHVVPVDIY 128

Query: 156 VPGCPPTAEALIYGILLLQKKIRRV 180
           +PGCPP  E L++ IL L +KI+++
Sbjct: 129 LPGCPPRPEMLLHAILKLHEKIQQM 153


>gi|119511864|ref|ZP_01630964.1| NADH dehydrogenase beta subunit [Nodularia spumigena CCY9414]
 gi|119463506|gb|EAW44443.1| NADH dehydrogenase beta subunit [Nodularia spumigena CCY9414]
          Length = 246

 Score =  161 bits (407), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 73/143 (51%), Positives = 101/143 (70%), Gaps = 1/143 (0%)

Query: 36  KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDV 95
           +  ++T+VD L  WAR  SL  + FG ACC +E       R+D +RFG  PR+SPRQ+D+
Sbjct: 30  ENVILTTVDDLYNWARLSSLWPLLFGTACCFIEFAALIGSRFDFDRFGLIPRSSPRQADL 89

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPVDI 154
           +I AGT+T KMA  L R+Y+QMPEP+YVI+MG+C   GG +   S + VRG D+++PVD+
Sbjct: 90  IITAGTITMKMAPQLVRLYEQMPEPKYVIAMGACTITGGMFSMDSPTAVRGVDKLIPVDV 149

Query: 155 YVPGCPPTAEALIYGILLLQKKI 177
           Y+PGCPP  EA+I  I+ L+KKI
Sbjct: 150 YLPGCPPRPEAIIDAIIKLRKKI 172


>gi|223931071|ref|YP_002586932.1| NADH-plastoquinone oxidoreductase subunit K [Syntrichia ruralis]
 gi|219562285|gb|ACL27616.1| NADH-plastoquinone oxidoreductase subunit K [Syntrichia ruralis]
          Length = 249

 Score =  161 bits (407), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 70/150 (46%), Positives = 104/150 (69%), Gaps = 1/150 (0%)

Query: 29  ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88
           +S++      ++T+ +    WAR  SL  + +G +CC +E       R+D +R+G  PR+
Sbjct: 25  LSNQKNPNSIILTTFNDFSNWARLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRS 84

Query: 89  SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCD 147
           SPRQ+D++I AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D
Sbjct: 85  SPRQADLIITAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVD 144

Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
           +++PVDIY+PGCPP  EA+I  I+ L+KK+
Sbjct: 145 KLIPVDIYLPGCPPKPEAIIDAIIKLRKKV 174


>gi|17231333|ref|NP_487881.1| NADH dehydrogenase subunit B [Nostoc sp. PCC 7120]
 gi|20141594|sp|Q44240|NDHK_ANASP RecName: Full=NAD(P)H-quinone oxidoreductase subunit K; AltName:
           Full=NAD(P)H dehydrogenase I subunit K; AltName:
           Full=NDH-1 subunit K; Short=NDH-K
 gi|17132975|dbj|BAB75540.1| NADH dehydrogenase chain K [Nostoc sp. PCC 7120]
          Length = 245

 Score =  161 bits (407), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 73/143 (51%), Positives = 101/143 (70%), Gaps = 1/143 (0%)

Query: 36  KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDV 95
           +  ++T+VD L  WAR  SL  + FG ACC +E       R+D +RFG  PR+SPRQ+D+
Sbjct: 30  ENVILTTVDDLYNWARLSSLWPLLFGTACCFIEFAALIGSRFDFDRFGLIPRSSPRQADL 89

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPVDI 154
           +I AGT+T KMA  L R+Y+QMPEP+YVI+MG+C   GG +   S + VRG D+++PVD+
Sbjct: 90  IITAGTITMKMAPQLVRLYEQMPEPKYVIAMGACTITGGMFSVDSPTAVRGVDKLIPVDV 149

Query: 155 YVPGCPPTAEALIYGILLLQKKI 177
           Y+PGCPP  EA+I  I+ L+KKI
Sbjct: 150 YLPGCPPRPEAIIDAIIKLRKKI 172


>gi|186685599|ref|YP_001868795.1| NADH dehydrogenase subunit B [Nostoc punctiforme PCC 73102]
 gi|218527915|sp|B2J6S6|NDHK_NOSP7 RecName: Full=NAD(P)H-quinone oxidoreductase subunit K; AltName:
           Full=NAD(P)H dehydrogenase I subunit K; AltName:
           Full=NDH-1 subunit K; Short=NDH-K
 gi|186468051|gb|ACC83852.1| NADH-quinone oxidoreductase, B subunit [Nostoc punctiforme PCC
           73102]
          Length = 245

 Score =  161 bits (407), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 73/143 (51%), Positives = 101/143 (70%), Gaps = 1/143 (0%)

Query: 36  KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDV 95
           +  ++T+VD L  WAR  SL  + FG ACC +E       R+D +RFG  PR+SPRQ+D+
Sbjct: 30  ENVILTTVDDLYDWARLSSLWPLLFGTACCFIEFAALIGSRFDFDRFGLIPRSSPRQADL 89

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPVDI 154
           +I AGT+T KMA  L R+Y+QMPEP+YVI+MG+C   GG +   S + VRG D+++PVD+
Sbjct: 90  IITAGTITMKMAPQLVRLYEQMPEPKYVIAMGACTITGGMFSVDSPTAVRGVDKLIPVDV 149

Query: 155 YVPGCPPTAEALIYGILLLQKKI 177
           Y+PGCPP  EA+I  I+ L+KKI
Sbjct: 150 YLPGCPPRPEAIIDAIIKLRKKI 172


>gi|123965561|ref|YP_001010642.1| NADH dehydrogenase subunit B [Prochlorococcus marinus str. MIT
           9515]
 gi|218527921|sp|A2BUS4|NDHK_PROM5 RecName: Full=NAD(P)H-quinone oxidoreductase subunit K; AltName:
           Full=NAD(P)H dehydrogenase I subunit K; AltName:
           Full=NDH-1 subunit K; Short=NDH-K
 gi|123199927|gb|ABM71535.1| putative respiratory-chain NADH dehydrogenase subunit
           [Prochlorococcus marinus str. MIT 9515]
          Length = 244

 Score =  161 bits (407), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 74/148 (50%), Positives = 104/148 (70%), Gaps = 4/148 (2%)

Query: 36  KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDV 95
           +  ++TS+D L  WAR  SL  + +G ACC +E       R+D +RFG  PR+SPRQ+D+
Sbjct: 32  ENIIMTSLDDLHNWARLSSLWPLLYGTACCFIEFAALIGSRFDFDRFGLVPRSSPRQADL 91

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPVDI 154
           +IVAGT+T KMA AL R+Y+QMPEP+YVI+MG+C   GG +   S + VRG D+++PVD+
Sbjct: 92  LIVAGTVTMKMAPALVRLYEQMPEPKYVIAMGACTITGGMFSADSTTAVRGVDKLIPVDL 151

Query: 155 YVPGCPPTAEALIYGILLLQKKIRRVGN 182
           Y+PGCPP  EA+   ++ L+KK   VGN
Sbjct: 152 YLPGCPPRPEAIFDAVIKLRKK---VGN 176


>gi|218527891|sp|A2CI36|NDHK_CHLAT RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
          Length = 274

 Score =  161 bits (407), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 72/162 (44%), Positives = 109/162 (67%), Gaps = 4/162 (2%)

Query: 20  EKVDADFSRISSEITH---KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPR 76
           E    + S  + ++T       ++T+++ L  WAR  SL  + +G +CC +E       R
Sbjct: 43  ETSGKELSEATPQVTQSLSNQLILTTLNDLYNWARLSSLWPLLYGTSCCFIEFASLLGSR 102

Query: 77  YDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY 136
           +D +RFG  PR+SPRQ+D++I AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +
Sbjct: 103 FDFDRFGLVPRSSPRQADLIITAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMF 162

Query: 137 HY-SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
              SYS VRG D+++PVD+Y+PGCPP  EA+I  ++ L+KK+
Sbjct: 163 STDSYSTVRGVDKLIPVDVYLPGCPPKPEAIIDAVIKLRKKV 204


>gi|88808082|ref|ZP_01123593.1| NADH dehydrogenase beta subunit [Synechococcus sp. WH 7805]
 gi|88788121|gb|EAR19277.1| NADH dehydrogenase beta subunit [Synechococcus sp. WH 7805]
          Length = 248

 Score =  161 bits (407), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 75/165 (45%), Positives = 111/165 (67%), Gaps = 1/165 (0%)

Query: 14  QSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQAS 73
           ++SC      AD +   ++   +  ++TS+D L  WAR  SL  + +G ACC +E     
Sbjct: 16  EASCGPVAGAADGAPTVTQDLSENVILTSLDDLHNWARLSSLWPLLYGTACCFIEFAALL 75

Query: 74  MPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGG 133
             R+D +RFG  PR+SPRQ+D++IVAGT+T KMA AL R+Y+QMPEP+YVI+MG+C   G
Sbjct: 76  GSRFDFDRFGLVPRSSPRQADLLIVAGTVTMKMAPALVRLYEQMPEPKYVIAMGACTITG 135

Query: 134 GYYHY-SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
           G +   S + VRG D+++PVD+Y+PGCPP  EA+   ++ L+KK+
Sbjct: 136 GMFSADSTTAVRGVDKLIPVDLYMPGCPPRPEAIFDAVIKLRKKV 180


>gi|254526480|ref|ZP_05138532.1| NADH dehydrogenase i chain b or ndhk [Prochlorococcus marinus str.
           MIT 9202]
 gi|221537904|gb|EEE40357.1| NADH dehydrogenase i chain b or ndhk [Prochlorococcus marinus str.
           MIT 9202]
          Length = 241

 Score =  161 bits (407), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 71/143 (49%), Positives = 102/143 (71%), Gaps = 1/143 (0%)

Query: 36  KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDV 95
           +  ++TS+D L  WAR  SL  + +G ACC +E       R+D +RFG  PR+SPRQ+D+
Sbjct: 32  ENIILTSLDDLHNWARLSSLWPLLYGTACCFIEFAALIGSRFDFDRFGLVPRSSPRQADL 91

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPVDI 154
           +IVAGT+T KMA AL R+Y+QMPEP+YVI+MG+C   GG +   S + VRG D+++PVD+
Sbjct: 92  LIVAGTVTMKMAPALVRLYEQMPEPKYVIAMGACTITGGMFSADSTTAVRGVDKLIPVDL 151

Query: 155 YVPGCPPTAEALIYGILLLQKKI 177
           Y+PGCPP  EA+   ++ L+KK+
Sbjct: 152 YLPGCPPRPEAIFDAVIKLRKKV 174


>gi|33860851|ref|NP_892412.1| NADH dehydrogenase subunit B [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
 gi|81576412|sp|Q7V303|NDHK_PROMP RecName: Full=NAD(P)H-quinone oxidoreductase subunit K; AltName:
           Full=NAD(P)H dehydrogenase I subunit K; AltName:
           Full=NDH-1 subunit K; Short=NDH-K
 gi|33633793|emb|CAE18752.1| putative respiratory-chain NADH dehydrogenase subunit
           [Prochlorococcus marinus subsp. pastoris str. CCMP1986]
          Length = 244

 Score =  161 bits (407), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 71/143 (49%), Positives = 102/143 (71%), Gaps = 1/143 (0%)

Query: 36  KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDV 95
           +  ++TS+D L  WAR  SL  + +G ACC +E       R+D +RFG  PR+SPRQ+D+
Sbjct: 32  ENIIMTSLDDLHNWARLSSLWPLLYGTACCFIEFAALIGSRFDFDRFGLVPRSSPRQADL 91

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPVDI 154
           +IVAGT+T KMA AL R+Y+QMPEP+YVI+MG+C   GG +   S + VRG D+++PVD+
Sbjct: 92  LIVAGTVTMKMAPALVRLYEQMPEPKYVIAMGACTITGGMFSADSTTAVRGVDKLIPVDL 151

Query: 155 YVPGCPPTAEALIYGILLLQKKI 177
           Y+PGCPP  EA+   ++ L+KK+
Sbjct: 152 YLPGCPPRPEAIFDAVIKLRKKV 174


>gi|11466706|ref|NP_039302.1| NADH dehydrogenase subunit K [Marchantia polymorpha]
 gi|131322|sp|P06410|NDHK_MARPO RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
 gi|11676|emb|CAA28088.1| psbG [Marchantia polymorpha]
          Length = 243

 Score =  161 bits (407), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 74/165 (44%), Positives = 112/165 (67%), Gaps = 2/165 (1%)

Query: 14  QSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQAS 73
            +S ++ K   + S I+  +T+   ++T+ +    WAR  SL  + +G +CC +E     
Sbjct: 16  DNSTTMLKNSIESSFINKTLTN-SIILTTFNDFSNWARLSSLWPLLYGTSCCFIEFASLI 74

Query: 74  MPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGG 133
             R+D +R+G  PR+SPRQ+D++I AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   G
Sbjct: 75  GSRFDFDRYGLVPRSSPRQADLIITAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITG 134

Query: 134 GYYHY-SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
           G +   SY+ VRG D+++PVDIY+PGCPP  EA+I  I+ L+KKI
Sbjct: 135 GMFSTDSYTTVRGVDKLIPVDIYLPGCPPKPEAIIDAIIKLRKKI 179


>gi|118617947|ref|YP_906279.1| NADH dehydrogenase subunit B [Mycobacterium ulcerans Agy99]
 gi|183981497|ref|YP_001849788.1| NADH dehydrogenase I (chain B) NuoB (NADH- ubiquinone
           oxidoreductase chain B) [Mycobacterium marinum M]
 gi|238065178|sp|B2HGE7|NUOB_MYCMM RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|238065182|sp|A0PR39|NUOB_MYCUA RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|118570057|gb|ABL04808.1| NADH dehydrogenase I (chain B) NuoB (NADH- ubiquinone
           oxidoreductase chain B) [Mycobacterium ulcerans Agy99]
 gi|183174823|gb|ACC39933.1| NADH dehydrogenase I (chain B) NuoB (NADH- ubiquinone
           oxidoreductase chain B) [Mycobacterium marinum M]
          Length = 184

 Score =  161 bits (407), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 73/145 (50%), Positives = 109/145 (75%), Gaps = 2/145 (1%)

Query: 37  GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95
           G L+++V+++  + R  SL   TFGLACCA+EMM  + PR+D+ RFG     A+PRQ+D+
Sbjct: 10  GILLSTVEKVAGYVRKNSLWPATFGLACCAIEMMATAGPRFDIARFGMERFSATPRQADL 69

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
           MIVAG ++ KMA  LR++YDQM EP++V++MG CA+ GG ++ +Y++V+G D +VPVDIY
Sbjct: 70  MIVAGRVSQKMAPVLRQIYDQMAEPKWVLAMGVCASSGGMFN-NYAIVQGVDHVVPVDIY 128

Query: 156 VPGCPPTAEALIYGILLLQKKIRRV 180
           +PGCPP  E L++ IL L +KI+ +
Sbjct: 129 LPGCPPRPEMLLHAILKLHEKIQEM 153


>gi|157412655|ref|YP_001483521.1| NADH dehydrogenase subunit B [Prochlorococcus marinus str. MIT
           9215]
 gi|218527918|sp|A8G2V4|NDHK_PROM2 RecName: Full=NAD(P)H-quinone oxidoreductase subunit K; AltName:
           Full=NAD(P)H dehydrogenase I subunit K; AltName:
           Full=NDH-1 subunit K; Short=NDH-K
 gi|157387230|gb|ABV49935.1| putative respiratory-chain NADH dehydrogenase subunit
           [Prochlorococcus marinus str. MIT 9215]
          Length = 241

 Score =  160 bits (406), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 74/148 (50%), Positives = 104/148 (70%), Gaps = 4/148 (2%)

Query: 36  KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDV 95
           +  ++TS+D L  WAR  SL  + +G ACC +E       R+D +RFG  PR+SPRQ+D+
Sbjct: 32  ENIILTSLDDLHNWARLSSLWPLLYGTACCFIEFAALIGSRFDFDRFGLVPRSSPRQADL 91

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPVDI 154
           +IVAGT+T KMA AL R+Y+QMPEP+YVI+MG+C   GG +   S + VRG D+++PVD+
Sbjct: 92  LIVAGTVTMKMAPALVRLYEQMPEPKYVIAMGACTITGGMFSADSTTAVRGVDKLIPVDL 151

Query: 155 YVPGCPPTAEALIYGILLLQKKIRRVGN 182
           Y+PGCPP  EA+   ++ L+KK   VGN
Sbjct: 152 YLPGCPPRPEAIFDAVIKLRKK---VGN 176


>gi|124112067|ref|YP_001019118.1| 27 kDa subunit of NADH-ubiquinone oxidoreductase [Chlorokybus
           atmophyticus]
 gi|124012183|gb|ABM87958.1| 27 kDa subunit of NADH-ubiquinone oxidoreductase [Chlorokybus
           atmophyticus]
          Length = 281

 Score =  160 bits (406), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 72/162 (44%), Positives = 109/162 (67%), Gaps = 4/162 (2%)

Query: 20  EKVDADFSRISSEITH---KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPR 76
           E    + S  + ++T       ++T+++ L  WAR  SL  + +G +CC +E       R
Sbjct: 50  ETSGKELSEATPQVTQSLSNQLILTTLNDLYNWARLSSLWPLLYGTSCCFIEFASLLGSR 109

Query: 77  YDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY 136
           +D +RFG  PR+SPRQ+D++I AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +
Sbjct: 110 FDFDRFGLVPRSSPRQADLIITAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMF 169

Query: 137 HY-SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
              SYS VRG D+++PVD+Y+PGCPP  EA+I  ++ L+KK+
Sbjct: 170 STDSYSTVRGVDKLIPVDVYLPGCPPKPEAIIDAVIKLRKKV 211


>gi|148238589|ref|YP_001223976.1| NADH dehydrogenase subunit B [Synechococcus sp. WH 7803]
 gi|218527932|sp|A5GIB4|NDHK_SYNPW RecName: Full=NAD(P)H-quinone oxidoreductase subunit K; AltName:
           Full=NAD(P)H dehydrogenase I subunit K; AltName:
           Full=NDH-1 subunit K; Short=NDH-K
 gi|147847128|emb|CAK22679.1| NAD(P)H-quinone oxidoreductase subunit K [Synechococcus sp. WH
           7803]
          Length = 248

 Score =  160 bits (406), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 75/165 (45%), Positives = 111/165 (67%), Gaps = 1/165 (0%)

Query: 14  QSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQAS 73
           ++SC      AD +   ++   +  ++TS+D L  WAR  SL  + +G ACC +E     
Sbjct: 16  EASCGPVAGAADGAPTVTQDLSENVILTSLDDLHNWARLSSLWPLLYGTACCFIEFAALL 75

Query: 74  MPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGG 133
             R+D +RFG  PR+SPRQ+D++IVAGT+T KMA AL R+Y+QMPEP+YVI+MG+C   G
Sbjct: 76  GSRFDFDRFGLVPRSSPRQADLLIVAGTVTMKMAPALVRLYEQMPEPKYVIAMGACTITG 135

Query: 134 GYYHY-SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
           G +   S + VRG D+++PVD+Y+PGCPP  EA+   ++ L+KK+
Sbjct: 136 GMFSADSTTAVRGVDKLIPVDLYMPGCPPRPEAIFDAVIKLRKKV 180


>gi|269218338|ref|ZP_06162192.1| NADH-quinone oxidoreductase, B subunit [Actinomyces sp. oral taxon
           848 str. F0332]
 gi|269212197|gb|EEZ78537.1| NADH-quinone oxidoreductase, B subunit [Actinomyces sp. oral taxon
           848 str. F0332]
          Length = 199

 Score =  160 bits (406), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 73/145 (50%), Positives = 107/145 (73%), Gaps = 2/145 (1%)

Query: 36  KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSD 94
           +G  +TSV+ +  WA T S   +T GLACCA+EMM    PR+D  RFG    RASPRQ+D
Sbjct: 22  QGVFLTSVEAVANWAVTNSQWPVTMGLACCAIEMMSFGTPRFDAARFGMEVFRASPRQAD 81

Query: 95  VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154
           +MIV+G +++KMA  +R +YD+M +P++V+SMG CA+ GG ++ +Y++V+GCD IVPVD+
Sbjct: 82  LMIVSGRVSHKMAPVVRDIYDKMTDPKWVVSMGVCASSGGMFN-NYAIVQGCDHIVPVDV 140

Query: 155 YVPGCPPTAEALIYGILLLQKKIRR 179
           Y+PGCPP  E LI  +L L++ ++R
Sbjct: 141 YLPGCPPRPEMLINAVLELREHVKR 165


>gi|170079340|ref|YP_001735978.1| NADH dehydrogenase subunit B [Synechococcus sp. PCC 7002]
 gi|218527931|sp|B1XMK4|NDHK_SYNP2 RecName: Full=NAD(P)H-quinone oxidoreductase subunit K; AltName:
           Full=NAD(P)H dehydrogenase I subunit K; AltName:
           Full=NDH-1 subunit K; Short=NDH-K
 gi|169887009|gb|ACB00723.1| NADH dehydrogenase subunit K [Synechococcus sp. PCC 7002]
          Length = 243

 Score =  160 bits (406), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 72/152 (47%), Positives = 110/152 (72%), Gaps = 2/152 (1%)

Query: 27  SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP 86
           S+++ +++ +  ++T+VD L  WAR  SL  + +G ACC +E       R+D +RFG  P
Sbjct: 23  SQVTQDLS-ENVILTTVDDLYNWARLSSLWPLLYGTACCFIEFAALLGSRFDFDRFGLVP 81

Query: 87  RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCA-NGGGYYHYSYSVVRG 145
           R+SPRQ+D+++VAGT+T KMA AL R+Y++MPEP+YVI+MG+C   GG +   S + VRG
Sbjct: 82  RSSPRQADLILVAGTVTMKMAPALVRLYEEMPEPKYVIAMGACTITGGMFSSDSTTAVRG 141

Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
            D+++PVD+Y+PGCPP  EA+I  I+ L+KK+
Sbjct: 142 VDKLIPVDLYIPGCPPRPEAIIDAIIKLRKKV 173


>gi|123967853|ref|YP_001008711.1| NADH dehydrogenase subunit B [Prochlorococcus marinus str. AS9601]
 gi|218527922|sp|A2BP93|NDHK_PROMS RecName: Full=NAD(P)H-quinone oxidoreductase subunit K; AltName:
           Full=NAD(P)H dehydrogenase I subunit K; AltName:
           Full=NDH-1 subunit K; Short=NDH-K
 gi|123197963|gb|ABM69604.1| putative respiratory-chain NADH dehydrogenase subunit
           [Prochlorococcus marinus str. AS9601]
          Length = 244

 Score =  160 bits (406), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 71/143 (49%), Positives = 102/143 (71%), Gaps = 1/143 (0%)

Query: 36  KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDV 95
           +  ++TS+D L  WAR  SL  + +G ACC +E       R+D +RFG  PR+SPRQ+D+
Sbjct: 32  ENIILTSLDDLHNWARLSSLWPLLYGTACCFIEFAALIGSRFDFDRFGLVPRSSPRQADL 91

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPVDI 154
           +IVAGT+T KMA AL R+Y+QMPEP+YVI+MG+C   GG +   S + VRG D+++PVD+
Sbjct: 92  LIVAGTVTMKMAPALVRLYEQMPEPKYVIAMGACTITGGMFSADSTTAVRGVDKLIPVDL 151

Query: 155 YVPGCPPTAEALIYGILLLQKKI 177
           Y+PGCPP  EA+   ++ L+KK+
Sbjct: 152 YLPGCPPRPEAIFDAVIKLRKKV 174


>gi|330850634|ref|YP_004376515.1| NADH-plastoquinone oxidoreductase subunit K [Ptilidium
           pulcherrimum]
 gi|302024763|gb|ADK89609.1| NADH-plastoquinone oxidoreductase subunit K [Ptilidium
           pulcherrimum]
          Length = 250

 Score =  160 bits (406), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 73/156 (46%), Positives = 106/156 (67%), Gaps = 2/156 (1%)

Query: 23  DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82
           D +FS  +  +T    ++T+ +    WAR  SL  + +G +CC +E       R+D +R+
Sbjct: 25  DIEFSLFNKTVTD-SIILTTFNDFSNWARLSSLWPLLYGTSCCFIEFASLIGSRFDFDRY 83

Query: 83  GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYS 141
           G  PR+SPRQ+D++I AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SY+
Sbjct: 84  GLVPRSSPRQADLIITAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYT 143

Query: 142 VVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
            VRG D+++PVDIY+PGCPP  EA+I  I  L+KKI
Sbjct: 144 TVRGVDKLIPVDIYLPGCPPKPEAIIDAITKLRKKI 179


>gi|298490489|ref|YP_003720666.1| NADH-quinone oxidoreductase subunit B ['Nostoc azollae' 0708]
 gi|298232407|gb|ADI63543.1| NADH-quinone oxidoreductase, B subunit ['Nostoc azollae' 0708]
          Length = 244

 Score =  160 bits (406), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 73/143 (51%), Positives = 101/143 (70%), Gaps = 1/143 (0%)

Query: 36  KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDV 95
           +  ++T+VD L  WAR  SL  + FG ACC +E       R+D +RFG  PR+SPRQ+D+
Sbjct: 30  ENVILTTVDDLYNWARLSSLWPLLFGTACCFIEFAALIGSRFDFDRFGLIPRSSPRQADL 89

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPVDI 154
           +I AGT+T KMA  L R+Y+QMPEP+YVI+MG+C   GG +   S + VRG D+++PVD+
Sbjct: 90  IITAGTITMKMAPQLVRLYEQMPEPKYVIAMGACTITGGMFSVDSPTAVRGVDKLIPVDV 149

Query: 155 YVPGCPPTAEALIYGILLLQKKI 177
           Y+PGCPP  EA+I  I+ L+KKI
Sbjct: 150 YLPGCPPRPEAIIDAIIKLRKKI 172


>gi|91069905|gb|ABE10834.1| putative respiratory-chain NADH dehydrogenase subunit [uncultured
           Prochlorococcus marinus clone ASNC2150]
          Length = 244

 Score =  160 bits (406), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 74/148 (50%), Positives = 104/148 (70%), Gaps = 4/148 (2%)

Query: 36  KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDV 95
           +  ++TS+D L  WAR  SL  + +G ACC +E       R+D +RFG  PR+SPRQ+D+
Sbjct: 32  ENIILTSLDDLHNWARLSSLWPLLYGTACCFIEFAALIGSRFDFDRFGLVPRSSPRQADL 91

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPVDI 154
           +IVAGT+T KMA AL R+Y+QMPEP+YVI+MG+C   GG +   S + VRG D+++PVD+
Sbjct: 92  LIVAGTVTMKMAPALVRLYEQMPEPKYVIAMGACTITGGMFSADSTTAVRGVDKLIPVDL 151

Query: 155 YVPGCPPTAEALIYGILLLQKKIRRVGN 182
           Y+PGCPP  EA+   ++ L+KK   VGN
Sbjct: 152 YLPGCPPRPEAIFDAVIKLRKK---VGN 176


>gi|126695655|ref|YP_001090541.1| NADH dehydrogenase subunit B [Prochlorococcus marinus str. MIT
           9301]
 gi|218527916|sp|A3PB15|NDHK_PROM0 RecName: Full=NAD(P)H-quinone oxidoreductase subunit K; AltName:
           Full=NAD(P)H dehydrogenase I subunit K; AltName:
           Full=NDH-1 subunit K; Short=NDH-K
 gi|126542698|gb|ABO16940.1| putative respiratory-chain NADH dehydrogenase subunit
           [Prochlorococcus marinus str. MIT 9301]
          Length = 244

 Score =  160 bits (406), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 71/143 (49%), Positives = 102/143 (71%), Gaps = 1/143 (0%)

Query: 36  KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDV 95
           +  ++TS+D L  WAR  SL  + +G ACC +E       R+D +RFG  PR+SPRQ+D+
Sbjct: 32  ENIILTSLDDLHNWARLSSLWPLLYGTACCFIEFAALIGSRFDFDRFGLVPRSSPRQADL 91

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPVDI 154
           +IVAGT+T KMA AL R+Y+QMPEP+YVI+MG+C   GG +   S + VRG D+++PVD+
Sbjct: 92  LIVAGTVTMKMAPALVRLYEQMPEPKYVIAMGACTITGGMFSADSTTAVRGVDKLIPVDL 151

Query: 155 YVPGCPPTAEALIYGILLLQKKI 177
           Y+PGCPP  EA+   ++ L+KK+
Sbjct: 152 YLPGCPPRPEAIFDAVIKLRKKV 174


>gi|289751824|ref|ZP_06511202.1| LOW QUALITY PROTEIN: NADH dehydrogenase subunit I B nuoB
           [Mycobacterium tuberculosis T92]
 gi|289692411|gb|EFD59840.1| LOW QUALITY PROTEIN: NADH dehydrogenase subunit I B nuoB
           [Mycobacterium tuberculosis T92]
          Length = 185

 Score =  160 bits (406), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 73/145 (50%), Positives = 110/145 (75%), Gaps = 2/145 (1%)

Query: 37  GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95
           G L+++V+++  + R  SL   TFGLACCA+EMM  + PR+D+ RFG     A+PRQ+D+
Sbjct: 10  GILLSTVEKVAGYVRKNSLWPATFGLACCAIEMMATAGPRFDIARFGMERFSATPRQADL 69

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
           MIVAG ++ KMA  LR++YDQM EP++V++MG CA+ GG ++ +Y++V+G D +VPVDIY
Sbjct: 70  MIVAGRVSQKMAPVLRQIYDQMAEPKWVLAMGVCASSGGMFN-NYAIVQGVDHVVPVDIY 128

Query: 156 VPGCPPTAEALIYGILLLQKKIRRV 180
           +PGCPP  E L++ IL L +KI+++
Sbjct: 129 LPGCPPRPEMLLHAILKLHEKIQQM 153


>gi|22652005|gb|AAN03554.1|AF381040_4 NADH dehydrogenase subunit K [Synechococcus sp. PCC 7002]
          Length = 241

 Score =  160 bits (406), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 72/152 (47%), Positives = 110/152 (72%), Gaps = 2/152 (1%)

Query: 27  SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP 86
           S+++ +++ +  ++T+VD L  WAR  SL  + +G ACC +E       R+D +RFG  P
Sbjct: 21  SQVTQDLS-ENVILTTVDDLYNWARLSSLWPLLYGTACCFIEFAALLGSRFDFDRFGLVP 79

Query: 87  RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCA-NGGGYYHYSYSVVRG 145
           R+SPRQ+D+++VAGT+T KMA AL R+Y++MPEP+YVI+MG+C   GG +   S + VRG
Sbjct: 80  RSSPRQADLILVAGTVTMKMAPALVRLYEEMPEPKYVIAMGACTITGGMFSSDSTTAVRG 139

Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
            D+++PVD+Y+PGCPP  EA+I  I+ L+KK+
Sbjct: 140 VDKLIPVDLYIPGCPPRPEAIIDAIIKLRKKV 171


>gi|83814127|ref|YP_444539.1| NADH-quinone oxidoreductase chain b [Salinibacter ruber DSM 13855]
 gi|294506285|ref|YP_003570343.1| NADH-quinone oxidoreductase chain B [Salinibacter ruber M8]
 gi|123529616|sp|Q2S5J2|NUOB_SALRD RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|83755521|gb|ABC43634.1| NADH-quinone oxidoreductase chain b [Salinibacter ruber DSM 13855]
 gi|294342613|emb|CBH23391.1| NADH-quinone oxidoreductase chain B [Salinibacter ruber M8]
          Length = 213

 Score =  160 bits (406), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 77/151 (50%), Positives = 107/151 (70%), Gaps = 2/151 (1%)

Query: 30  SSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APRA 88
           SS    +GF  T VD  + WAR+ SLM M  GLACCA+EMM  + P+YD  RFG  A R 
Sbjct: 4   SSGTNGQGFFTTRVDTFLNWARSNSLMPMPMGLACCAIEMMGFAGPKYDSARFGSEAMRF 63

Query: 89  SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 148
           SPRQ+D+MIVAG  + KM+ A+RRV+DQM +P++ I+MG+CA+ GG  H  Y VV+G D 
Sbjct: 64  SPRQADLMIVAGWCSYKMSHAIRRVWDQMGDPKWCIAMGACASTGG-MHRCYGVVQGVDN 122

Query: 149 IVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
            +PVD+Y+ GCPP  E++++ ++ +Q+KIR 
Sbjct: 123 FLPVDVYISGCPPRPESVLHALMDIQEKIRN 153


>gi|119714785|ref|YP_921750.1| NADH dehydrogenase subunit B [Nocardioides sp. JS614]
 gi|238065185|sp|A1SE28|NUOB_NOCSJ RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|119535446|gb|ABL80063.1| NADH dehydrogenase subunit B [Nocardioides sp. JS614]
          Length = 184

 Score =  160 bits (406), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 75/144 (52%), Positives = 106/144 (73%), Gaps = 2/144 (1%)

Query: 37  GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95
           G L+++V+ L  + R  S    +FGLACCA+EMM +  P++DL RFG    RASPRQ+DV
Sbjct: 10  GVLLSTVEGLAGYMRKASFWPASFGLACCAIEMMTSGGPKHDLGRFGMEVFRASPRQADV 69

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
           MIVAG ++ KMA  LR++YDQMPEP++V++MG CA+ GG ++ +Y+VV+G D +VPVD+Y
Sbjct: 70  MIVAGRVSQKMAPVLRQIYDQMPEPKWVLAMGVCASSGGMFN-NYAVVQGVDHVVPVDMY 128

Query: 156 VPGCPPTAEALIYGILLLQKKIRR 179
           +PGCPP  + LI  IL L  K++ 
Sbjct: 129 LPGCPPRPQMLIDAILKLHDKVQH 152


>gi|78778680|ref|YP_396792.1| NADH dehydrogenase subunit B [Prochlorococcus marinus str. MIT
           9312]
 gi|123554667|sp|Q31CN9|NDHK_PROM9 RecName: Full=NAD(P)H-quinone oxidoreductase subunit K; AltName:
           Full=NAD(P)H dehydrogenase I subunit K; AltName:
           Full=NDH-1 subunit K; Short=NDH-K
 gi|78712179|gb|ABB49356.1| NADH dehydrogenase subunit B [Prochlorococcus marinus str. MIT
           9312]
          Length = 244

 Score =  160 bits (405), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 71/143 (49%), Positives = 102/143 (71%), Gaps = 1/143 (0%)

Query: 36  KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDV 95
           +  ++TS+D L  WAR  SL  + +G ACC +E       R+D +RFG  PR+SPRQ+D+
Sbjct: 32  ENIILTSLDDLHNWARLSSLWPLLYGTACCFIEFAALIGSRFDFDRFGLVPRSSPRQADL 91

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPVDI 154
           +IVAGT+T KMA AL R+Y+QMPEP+YVI+MG+C   GG +   S + VRG D+++PVD+
Sbjct: 92  LIVAGTVTMKMAPALVRLYEQMPEPKYVIAMGACTITGGMFSADSTTAVRGVDKLIPVDL 151

Query: 155 YVPGCPPTAEALIYGILLLQKKI 177
           Y+PGCPP  EA+   ++ L+KK+
Sbjct: 152 YLPGCPPRPEAIFDAVIKLRKKV 174


>gi|29337233|sp|Q31791|NDHK_ANTFO RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
 gi|29122638|dbj|BAC55353.2| NADH dehydrogenase 27 kDa subunit [Anthoceros formosae]
          Length = 247

 Score =  160 bits (405), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 72/154 (46%), Positives = 104/154 (67%), Gaps = 1/154 (0%)

Query: 27  SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP 86
           S +  E T    ++T+ +    WAR  SL  + +G +CC +E       R+D +R+G  P
Sbjct: 24  SSLPDETTSDSIILTTFNDFSNWARLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVP 83

Query: 87  RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRG 145
           R+SPRQ+D++I AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG
Sbjct: 84  RSSPRQADLIITAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRG 143

Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
            D+++PVDIY+PGCPP  EA+I  I+ L+K + R
Sbjct: 144 VDKLIPVDIYLPGCPPKPEAIIDAIIKLRKGVAR 177


>gi|27808002|dbj|BAC55447.1| NADH dehydrogenase 27 kDa subunit [Anthoceros formosae]
          Length = 247

 Score =  160 bits (405), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 72/154 (46%), Positives = 104/154 (67%), Gaps = 1/154 (0%)

Query: 27  SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP 86
           S +  E T    ++T+ +    WAR  SL  + +G +CC +E       R+D +R+G  P
Sbjct: 24  SSLPDETTSDSIILTTFNDFSNWARLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVP 83

Query: 87  RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRG 145
           R+SPRQ+D++I AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG
Sbjct: 84  RSSPRQADLIITAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRG 143

Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
            D+++PVDIY+PGCPP  EA+I  I+ L+K + R
Sbjct: 144 VDKLIPVDIYLPGCPPKPEAIIDAIIKLRKGVAR 177


>gi|294056096|ref|YP_003549754.1| NADH-quinone oxidoreductase, B subunit [Coraliomargarita
           akajimensis DSM 45221]
 gi|293615429|gb|ADE55584.1| NADH-quinone oxidoreductase, B subunit [Coraliomargarita
           akajimensis DSM 45221]
          Length = 183

 Score =  160 bits (405), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 78/154 (50%), Positives = 107/154 (69%), Gaps = 7/154 (4%)

Query: 27  SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP 86
           S++  E+     +VT  D ++ W R  S+  M  GLACCA+E+M A   R+D+ RFG   
Sbjct: 12  SKVEGEV-----IVTQADAVINWIRKHSVWPMPMGLACCAIELMAAGGSRFDISRFGMEV 66

Query: 87  -RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRG 145
            R SPRQ+D MIVAGT+T KMA  +RR+Y+QM EP++V++MG+CA+ GG Y  SYS ++G
Sbjct: 67  MRFSPRQADCMIVAGTVTYKMAEVVRRIYEQMAEPKWVVAMGACASSGGMYR-SYSTLQG 125

Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
            DRIVPVD+Y+ GCPP  EAL+  ++ LQ KI R
Sbjct: 126 VDRIVPVDVYISGCPPRPEALLDAMIKLQDKIGR 159


>gi|194132108|gb|ACF33362.1| NADH-plastoquinone oxidoreductase subunit K [Gonystylus bancanus]
          Length = 229

 Score =  160 bits (405), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 71/147 (48%), Positives = 103/147 (70%), Gaps = 1/147 (0%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
           TH   + T+++ L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPRQ+
Sbjct: 13  THNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 72

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152
           D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++PV
Sbjct: 73  DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 132

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179
           D+Y+PGCPP  EA+I  I  L+KKI R
Sbjct: 133 DVYLPGCPPKPEAVIDAITKLRKKISR 159


>gi|282897133|ref|ZP_06305135.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit [Raphidiopsis
           brookii D9]
 gi|281197785|gb|EFA72679.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit [Raphidiopsis
           brookii D9]
          Length = 244

 Score =  160 bits (405), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 73/143 (51%), Positives = 100/143 (69%), Gaps = 1/143 (0%)

Query: 36  KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDV 95
           +  ++T+VD L  WAR  SL  + FG ACC +E       R+D +RFG  PR+SPRQ+D+
Sbjct: 30  ENVILTTVDDLYNWARLSSLWPLLFGTACCFIEFAALIGSRFDFDRFGLIPRSSPRQADL 89

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPVDI 154
           +I AGT+T KM   L R+Y+QMPEP+YVI+MG+C   GG +   S S VRG D+++PVD+
Sbjct: 90  LITAGTITMKMGPQLVRLYEQMPEPKYVIAMGACTITGGMFSVDSPSAVRGVDKLIPVDV 149

Query: 155 YVPGCPPTAEALIYGILLLQKKI 177
           Y+PGCPP  EA+I  I+ L+KKI
Sbjct: 150 YLPGCPPRPEAIIDAIIKLRKKI 172


>gi|215428603|ref|ZP_03426522.1| NADH dehydrogenase subunit C [Mycobacterium tuberculosis T92]
          Length = 420

 Score =  160 bits (404), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 73/145 (50%), Positives = 110/145 (75%), Gaps = 2/145 (1%)

Query: 37  GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95
           G L+++V+++  + R  SL   TFGLACCA+EMM  + PR+D+ RFG     A+PRQ+D+
Sbjct: 10  GILLSTVEKVAGYVRKNSLWPATFGLACCAIEMMATAGPRFDIARFGMERFSATPRQADL 69

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
           MIVAG ++ KMA  LR++YDQM EP++V++MG CA+ GG ++ +Y++V+G D +VPVDIY
Sbjct: 70  MIVAGRVSQKMAPVLRQIYDQMAEPKWVLAMGVCASSGGMFN-NYAIVQGVDHVVPVDIY 128

Query: 156 VPGCPPTAEALIYGILLLQKKIRRV 180
           +PGCPP  E L++ IL L +KI+++
Sbjct: 129 LPGCPPRPEMLLHAILKLHEKIQQM 153


>gi|84494929|ref|ZP_00994048.1| NADH dehydrogenase beta subunit [Janibacter sp. HTCC2649]
 gi|84384422|gb|EAQ00302.1| NADH dehydrogenase beta subunit [Janibacter sp. HTCC2649]
          Length = 198

 Score =  160 bits (404), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 73/144 (50%), Positives = 105/144 (72%), Gaps = 2/144 (1%)

Query: 37  GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95
           GF++T+++ +  + R  S+   TFGLACCA+EMM    P YD+ RFG     A+PRQ+D+
Sbjct: 10  GFVLTTLESVAGYMRKASIWPATFGLACCAIEMMAVGTPDYDIARFGMERFSATPRQADL 69

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
           MIVAG ++NKMA  +R+VYDQMP P++VISMG CA+ GG ++ +Y++V+G D I+PVDIY
Sbjct: 70  MIVAGRVSNKMAPVVRQVYDQMPNPKWVISMGVCASSGGMFN-NYAIVQGVDHIIPVDIY 128

Query: 156 VPGCPPTAEALIYGILLLQKKIRR 179
           +PGCPP  E L+  I+ L  +I+ 
Sbjct: 129 LPGCPPRPEMLLNAIIELHDQIQN 152


>gi|172072907|ref|YP_001806668.1| NADH dehydrogenase subunit K [Cryptomeria japonica]
 gi|171854926|dbj|BAG16666.1| NADH-plastoquinone oxidoreductase subunit K [Cryptomeria japonica]
 gi|239794295|dbj|BAH73292.1| NADH-plastoquinone oxidoreductase subunit K [Cryptomeria japonica]
 gi|239794377|dbj|BAH73373.1| NADH-plastoquinone oxidoreductase subunit K [Cryptomeria japonica]
          Length = 268

 Score =  160 bits (404), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 72/152 (47%), Positives = 105/152 (69%), Gaps = 1/152 (0%)

Query: 27  SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP 86
           S +  + T    + T+++ L  WAR  SL  + +G +CC +E       R+D +R+G  P
Sbjct: 36  SSLLDQTTSNSVISTTLNDLSNWARLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVP 95

Query: 87  RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRG 145
           R+SPRQ+D++I AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG
Sbjct: 96  RSSPRQADLLITAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRG 155

Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
            D+++PVDIY+PGCPP  EA+I  I+ L++KI
Sbjct: 156 VDKLIPVDIYLPGCPPKPEAIIDAIIKLREKI 187


>gi|154795238|ref|NP_777417.3| NADH dehydrogenase subunit K [Anthoceros formosae]
          Length = 229

 Score =  160 bits (404), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 72/154 (46%), Positives = 104/154 (67%), Gaps = 1/154 (0%)

Query: 27  SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP 86
           S +  E T    ++T+ +    WAR  SL  + +G +CC +E       R+D +R+G  P
Sbjct: 6   SSLPDETTSDSIILTTFNDFSNWARLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVP 65

Query: 87  RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRG 145
           R+SPRQ+D++I AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG
Sbjct: 66  RSSPRQADLIITAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRG 125

Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
            D+++PVDIY+PGCPP  EA+I  I+ L+K + R
Sbjct: 126 VDKLIPVDIYLPGCPPKPEAIIDAIIKLRKGVAR 159


>gi|158339661|ref|YP_001520668.1| NADH dehydrogenase subunit B [Acaryochloris marina MBIC11017]
 gi|218527877|sp|A8ZK18|NDHK2_ACAM1 RecName: Full=NAD(P)H-quinone oxidoreductase subunit K 2; AltName:
           Full=NAD(P)H dehydrogenase I subunit K 2; AltName:
           Full=NDH-1 subunit K 2; Short=NDH-K 2
 gi|158309902|gb|ABW31518.1| proton-translocating NAD(P)H-quinone oxidoreductase, chain B,
           putative [Acaryochloris marina MBIC11017]
          Length = 209

 Score =  160 bits (404), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 75/150 (50%), Positives = 105/150 (70%), Gaps = 4/150 (2%)

Query: 32  EITHK---GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88
           E+T +     ++T++D L  W +  SL    FG ACC +E M A   R+D+ERFG  PRA
Sbjct: 18  EVTQELSDNVILTALDDLYDWVKMSSLYPFMFGTACCFMEFMGAYASRFDMERFGMIPRA 77

Query: 89  SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCD 147
           +PRQ+D++I AGT+T K A AL R+Y+QMPEP+YV++MG+C   GG +   S S VRG D
Sbjct: 78  TPRQADLLITAGTITMKYAPALVRLYEQMPEPKYVMAMGACTITGGMFSADSPSAVRGVD 137

Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
           +++PVD+Y+PGCPP AEA++  I  L+KKI
Sbjct: 138 KLIPVDVYIPGCPPRAEAVLDAITKLRKKI 167


>gi|78183815|ref|YP_376249.1| NADH dehydrogenase subunit B [Synechococcus sp. CC9902]
 gi|123582227|sp|Q3B0C2|NDHK_SYNS9 RecName: Full=NAD(P)H-quinone oxidoreductase subunit K; AltName:
           Full=NAD(P)H dehydrogenase I subunit K; AltName:
           Full=NDH-1 subunit K; Short=NDH-K
 gi|78168109|gb|ABB25206.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit [Synechococcus sp.
           CC9902]
          Length = 244

 Score =  160 bits (404), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 72/151 (47%), Positives = 108/151 (71%), Gaps = 2/151 (1%)

Query: 28  RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
            +++E++ +  ++TS+D L  WAR  SL  + +G ACC +E       R+D +RFG  PR
Sbjct: 25  EVTNELS-ENIILTSLDDLHNWARLSSLWPLLYGTACCFIEFAALLGSRFDFDRFGLVPR 83

Query: 88  ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGC 146
           +SPRQ+D++IVAGT+T KMA AL R+Y+QMPEP+YVI+MG+C   GG +   S + VRG 
Sbjct: 84  SSPRQADLLIVAGTVTMKMAPALVRLYEQMPEPKYVIAMGACTITGGMFSADSTTAVRGV 143

Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
           D+++PVD+Y+PGCPP  EA+   ++ L+KK+
Sbjct: 144 DKLIPVDLYLPGCPPRPEAIFDAVIKLRKKV 174


>gi|313679548|ref|YP_004057287.1| NADH dehydrogenase subunit b [Oceanithermus profundus DSM 14977]
 gi|313152263|gb|ADR36114.1| NADH dehydrogenase subunit B [Oceanithermus profundus DSM 14977]
          Length = 184

 Score =  160 bits (404), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 78/149 (52%), Positives = 109/149 (73%)

Query: 29  ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88
           + S+   +  ++ ++D L+  AR+ S+  +TFG+ACCA+EMM    P+ D +RFG   R 
Sbjct: 4   LGSDERPRDIILGTLDDLINMARSRSMWPLTFGIACCAIEMMATWDPKIDADRFGMFFRN 63

Query: 89  SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 148
           +PRQ+DVMIV+GT+  K+A  LRR+YDQM EP++VISMG+CAN GG +   YSVV G D+
Sbjct: 64  TPRQADVMIVSGTVNKKLAKRLRRLYDQMAEPKWVISMGACANQGGPFRQGYSVVEGVDK 123

Query: 149 IVPVDIYVPGCPPTAEALIYGILLLQKKI 177
           IVPVD+Y+PGCPP  EAL+  +LLL+ KI
Sbjct: 124 IVPVDVYIPGCPPRPEALLQALLLLRDKI 152


>gi|282901528|ref|ZP_06309450.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit [Cylindrospermopsis
           raciborskii CS-505]
 gi|281193571|gb|EFA68546.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit [Cylindrospermopsis
           raciborskii CS-505]
          Length = 245

 Score =  160 bits (404), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 73/143 (51%), Positives = 100/143 (69%), Gaps = 1/143 (0%)

Query: 36  KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDV 95
           +  ++T+VD L  WAR  SL  + FG ACC +E       R+D +RFG  PR+SPRQ+D+
Sbjct: 31  ENVILTTVDDLYNWARLSSLWPLLFGTACCFIEFAALIGSRFDFDRFGLIPRSSPRQADL 90

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPVDI 154
           +I AGT+T KM   L R+Y+QMPEP+YVI+MG+C   GG +   S S VRG D+++PVD+
Sbjct: 91  LITAGTITVKMGPQLVRLYEQMPEPKYVIAMGACTITGGMFSVDSPSAVRGVDKLIPVDV 150

Query: 155 YVPGCPPTAEALIYGILLLQKKI 177
           Y+PGCPP  EA+I  I+ L+KKI
Sbjct: 151 YLPGCPPRPEAIIDAIIKLRKKI 173


>gi|116071575|ref|ZP_01468843.1| NADH dehydrogenase beta subunit [Synechococcus sp. BL107]
 gi|116065198|gb|EAU70956.1| NADH dehydrogenase beta subunit [Synechococcus sp. BL107]
          Length = 244

 Score =  160 bits (404), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 72/150 (48%), Positives = 108/150 (72%), Gaps = 2/150 (1%)

Query: 29  ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88
           +++E++ +  ++TS+D L  WAR  SL  + +G ACC +E       R+D +RFG  PR+
Sbjct: 26  VTNELS-ENIILTSLDDLHNWARLSSLWPLLYGTACCFIEFAALLGSRFDFDRFGLVPRS 84

Query: 89  SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCD 147
           SPRQ+D++IVAGT+T KMA AL R+Y+QMPEP+YVI+MG+C   GG +   S + VRG D
Sbjct: 85  SPRQADLLIVAGTVTMKMAPALVRLYEQMPEPKYVIAMGACTITGGMFSADSTTAVRGVD 144

Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
           +++PVD+Y+PGCPP  EA+   ++ L+KK+
Sbjct: 145 KLIPVDLYLPGCPPRPEAIFDAVIKLRKKV 174


>gi|218527900|sp|B1VKF5|NDHK_CRYJA RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
          Length = 238

 Score =  160 bits (404), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 72/152 (47%), Positives = 105/152 (69%), Gaps = 1/152 (0%)

Query: 27  SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP 86
           S +  + T    + T+++ L  WAR  SL  + +G +CC +E       R+D +R+G  P
Sbjct: 6   SSLLDQTTSNSVISTTLNDLSNWARLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVP 65

Query: 87  RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRG 145
           R+SPRQ+D++I AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG
Sbjct: 66  RSSPRQADLLITAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRG 125

Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
            D+++PVDIY+PGCPP  EA+I  I+ L++KI
Sbjct: 126 VDKLIPVDIYLPGCPPKPEAIIDAIIKLREKI 157


>gi|5139325|emb|CAB45640.1| NDH-K protein [Nostoc sp. PCC 7120]
          Length = 245

 Score =  160 bits (404), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 72/143 (50%), Positives = 101/143 (70%), Gaps = 1/143 (0%)

Query: 36  KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDV 95
           +  ++T+VD L  WAR  SL  + FG ACC +E       R+D +RFG  PR+SPRQ+D+
Sbjct: 30  ENVILTTVDDLYNWARLSSLWPLLFGTACCFIEFAALIGSRFDFDRFGLIPRSSPRQADL 89

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPVDI 154
           +I AGT+T KMA  L R+Y+QMPEP+YVI+MG+C   GG +   S + VRG D+++PVD+
Sbjct: 90  IITAGTITMKMAPQLVRLYEQMPEPKYVIAMGACTITGGMFSVDSPTAVRGVDKLIPVDV 149

Query: 155 YVPGCPPTAEALIYGILLLQKKI 177
           Y+PGCPP  EA+I  ++ L+KKI
Sbjct: 150 YLPGCPPRPEAIIDAMIKLRKKI 172


>gi|94267895|ref|ZP_01291027.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit [delta
           proteobacterium MLMS-1]
 gi|93451814|gb|EAT02564.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit [delta
           proteobacterium MLMS-1]
          Length = 177

 Score =  160 bits (404), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 74/138 (53%), Positives = 102/138 (73%), Gaps = 3/138 (2%)

Query: 43  VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGT 101
           +D+L+   R  SL  +TFGLACCA+EMM     R+DL+RFG    R +P+QSDVMIVAGT
Sbjct: 25  LDKLLNLGRANSLWPLTFGLACCAIEMMATGASRFDLDRFGMGVFRPAPKQSDVMIVAGT 84

Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS--YSVVRGCDRIVPVDIYVPGC 159
           ++ KMA A+  +Y+QMP P++VI+MG+CA  GG + +   Y +V G D+IVPVD+Y+PGC
Sbjct: 85  VSKKMAPAVVTLYEQMPHPKWVIAMGNCAISGGPFAFEGQYGIVEGADKIVPVDVYIPGC 144

Query: 160 PPTAEALIYGILLLQKKI 177
           PP  EALI G+L L++K+
Sbjct: 145 PPRPEALIEGLLQLEEKL 162


>gi|194476962|ref|YP_002049141.1| NADH dehydrogenase beta subunit [Paulinella chromatophora]
 gi|218527929|sp|B1X4R2|NDHK_PAUCH RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, organellar
           chromatophore; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
 gi|171191969|gb|ACB42931.1| NADH dehydrogenase beta subunit [Paulinella chromatophora]
          Length = 246

 Score =  160 bits (404), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 74/148 (50%), Positives = 104/148 (70%), Gaps = 4/148 (2%)

Query: 36  KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDV 95
           +  ++TS+D L  WAR  SL  + +G ACC +E       R+D +RFG  PR+SPRQ+D+
Sbjct: 30  ENIILTSLDDLHNWARLSSLWPLLYGTACCFIEFAALIGSRFDFDRFGLVPRSSPRQADL 89

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCA-NGGGYYHYSYSVVRGCDRIVPVDI 154
           +IVAGT+T KMA AL R+Y+QMPEP+YVI+MG+C   GG +   S + VRG D+++PVD+
Sbjct: 90  IIVAGTVTMKMAPALVRLYEQMPEPKYVIAMGACTITGGMFSSDSTTAVRGVDKLIPVDL 149

Query: 155 YVPGCPPTAEALIYGILLLQKKIRRVGN 182
           Y+PGCPP  EA+   ++ L+KK   VGN
Sbjct: 150 YLPGCPPRPEAIFDAVIKLRKK---VGN 174


>gi|77917822|ref|YP_355637.1| trifunctional NADH dehydrogenase I subunit B/C/D [Pelobacter
           carbinolicus DSM 2380]
 gi|123575097|sp|Q3A825|NUBCD_PELCD RecName: Full=NADH-quinone oxidoreductase subunit B/C/D; AltName:
           Full=NADH dehydrogenase I subunit B/C/D; AltName:
           Full=NDH-1 subunit B/C/D
 gi|77543905|gb|ABA87467.1| NADH dehydrogenase subunit B / NADH dehydrogenase subunit D / NADH
           dehydrogenase subunit C [Pelobacter carbinolicus DSM
           2380]
          Length = 794

 Score =  160 bits (404), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 73/150 (48%), Positives = 108/150 (72%), Gaps = 2/150 (1%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RAS 89
           SE   K  ++T++D  + W R  S+  M FGL+CC VEMM +  PR+DL RFG    R +
Sbjct: 2   SESIPKNIILTTLDDAINWGRKNSMWPMFFGLSCCFVEMMGSMTPRFDLARFGAEVLRGT 61

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PR++D+M++AGT   KMA+++ RVY++M  P++VI+MGSCAN GG Y   YSV++G +++
Sbjct: 62  PREADLMVIAGTPFKKMAASMLRVYEEMANPKWVIAMGSCANSGGMYDV-YSVMQGVNQV 120

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           +PVD+Y+PGCPP  EA + G++ LQ+KI R
Sbjct: 121 LPVDVYIPGCPPRPEAFMQGLMTLQEKIAR 150


>gi|317123846|ref|YP_004097958.1| NADH dehydrogenase subunit B [Intrasporangium calvum DSM 43043]
 gi|315587934|gb|ADU47231.1| NADH dehydrogenase subunit B [Intrasporangium calvum DSM 43043]
          Length = 184

 Score =  160 bits (404), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 74/149 (49%), Positives = 107/149 (71%), Gaps = 2/149 (1%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RAS 89
            E    GFL+++V+ L  + R  S+  +TFGLACCA+EMM    P YD+ RFG     A+
Sbjct: 4   EEKLPAGFLLSTVEGLAGYMRKASMWPVTFGLACCAIEMMAVGTPDYDIARFGMERFSAT 63

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQ+D+MIVAG ++ KMA  +R+VYDQMP P++VISMG CA+ GG ++ +Y++V+G D I
Sbjct: 64  PRQADLMIVAGRVSQKMAPVVRQVYDQMPNPKWVISMGVCASSGGMFN-NYAIVQGVDHI 122

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           +PVDIY+PGCPP  + L+  I+ L K+++
Sbjct: 123 IPVDIYLPGCPPRPQMLLNAIIELHKQVQ 151


>gi|148241313|ref|YP_001226470.1| NADH dehydrogenase subunit B [Synechococcus sp. RCC307]
 gi|218527933|sp|A5GQF8|NDHK_SYNR3 RecName: Full=NAD(P)H-quinone oxidoreductase subunit K; AltName:
           Full=NAD(P)H dehydrogenase I subunit K; AltName:
           Full=NDH-1 subunit K; Short=NDH-K
 gi|147849623|emb|CAK27117.1| NAD(P)H-quinone oxidoreductase subunit K [Synechococcus sp. RCC307]
          Length = 242

 Score =  160 bits (404), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 74/152 (48%), Positives = 106/152 (69%), Gaps = 4/152 (2%)

Query: 30  SSEIT---HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP 86
           S E+T    +  ++TS+D L  WAR  SL  + +G ACC +E       R+D +RFG  P
Sbjct: 22  SPEVTTDLSENVILTSLDDLHNWARLSSLWPLLYGTACCFIEFAALIGSRFDFDRFGLVP 81

Query: 87  RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRG 145
           R+SPRQ+D++IVAGT+T KMA AL R+Y+QMPEP+YVI+MG+C   GG +   S + VRG
Sbjct: 82  RSSPRQADLLIVAGTVTMKMAPALVRLYEQMPEPKYVIAMGACTITGGMFSADSTTAVRG 141

Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
            D+++PVD+Y+PGCPP  EA+   ++ L+KK+
Sbjct: 142 VDKLIPVDLYLPGCPPRPEAIFDAVIKLRKKV 173


>gi|78211756|ref|YP_380535.1| NADH dehydrogenase subunit B [Synechococcus sp. CC9605]
 gi|123578940|sp|Q3AN52|NDHK_SYNSC RecName: Full=NAD(P)H-quinone oxidoreductase subunit K; AltName:
           Full=NAD(P)H dehydrogenase I subunit K; AltName:
           Full=NDH-1 subunit K; Short=NDH-K
 gi|78196215|gb|ABB33980.1| NADH-quinone oxidoreductase, B subunit [Synechococcus sp. CC9605]
          Length = 246

 Score =  159 bits (403), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 71/143 (49%), Positives = 102/143 (71%), Gaps = 1/143 (0%)

Query: 36  KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDV 95
           +  ++TS+D L  WAR  SL  + +G ACC +E       R+D +RFG  PR+SPRQ+D+
Sbjct: 34  ENVILTSLDDLHNWARLSSLWPLLYGTACCFIEFAALLGSRFDFDRFGLVPRSSPRQADL 93

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPVDI 154
           +IVAGT+T KMA AL R+Y+QMPEP+YVI+MG+C   GG +   S + VRG D+++PVD+
Sbjct: 94  LIVAGTVTMKMAPALVRLYEQMPEPKYVIAMGACTITGGMFSADSTTAVRGVDKLIPVDL 153

Query: 155 YVPGCPPTAEALIYGILLLQKKI 177
           Y+PGCPP  EA+   ++ L+KK+
Sbjct: 154 YLPGCPPRPEAIFDAVIKLRKKV 176


>gi|33864158|ref|NP_895718.1| NADH dehydrogenase subunit B [Prochlorococcus marinus str. MIT
           9313]
 gi|81576854|sp|Q7V4Q5|NDHK_PROMM RecName: Full=NAD(P)H-quinone oxidoreductase subunit K; AltName:
           Full=NAD(P)H dehydrogenase I subunit K; AltName:
           Full=NDH-1 subunit K; Short=NDH-K
 gi|33635742|emb|CAE22067.1| putative respiratory-chain NADH dehydrogenase subunit
           [Prochlorococcus marinus str. MIT 9313]
          Length = 250

 Score =  159 bits (403), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 72/150 (48%), Positives = 108/150 (72%), Gaps = 2/150 (1%)

Query: 29  ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88
           ++S+++ +  ++TS+D L  WAR  SL  + +G ACC +E       R+D +RFG  PR+
Sbjct: 26  VTSDLS-ENIILTSLDDLHNWARLSSLWPLLYGTACCFIEFAALIGSRFDFDRFGLVPRS 84

Query: 89  SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCD 147
           SPRQ+D++IVAGT+T KMA AL R+Y+QMPEP+YVI+MG+C   GG +   S + VRG D
Sbjct: 85  SPRQADLLIVAGTVTMKMAPALVRLYEQMPEPKYVIAMGACTITGGMFSADSTTAVRGVD 144

Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
           +++PVD+Y+PGCPP  EA+   ++ L+KK+
Sbjct: 145 KLIPVDLYLPGCPPRPEAIFDAVIKLRKKV 174


>gi|33864744|ref|NP_896303.1| NADH dehydrogenase subunit B [Synechococcus sp. WH 8102]
 gi|81575356|sp|Q7U9P5|NDHK_SYNPX RecName: Full=NAD(P)H-quinone oxidoreductase subunit K; AltName:
           Full=NAD(P)H dehydrogenase I subunit K; AltName:
           Full=NDH-1 subunit K; Short=NDH-K
 gi|33632267|emb|CAE06723.1| NADH dehydrogenase I chain B or NdhK [Synechococcus sp. WH 8102]
          Length = 246

 Score =  159 bits (403), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 72/150 (48%), Positives = 108/150 (72%), Gaps = 2/150 (1%)

Query: 29  ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88
           ++S+++ +  ++TS+D L  WAR  SL  + +G ACC +E       R+D +RFG  PR+
Sbjct: 28  VTSDLS-ENVILTSLDDLHNWARLSSLWPLLYGTACCFIEFAALLGSRFDFDRFGLVPRS 86

Query: 89  SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCD 147
           SPRQ+D++IVAGT+T KMA AL R+Y+QMPEP+YVI+MG+C   GG +   S + VRG D
Sbjct: 87  SPRQADLLIVAGTVTMKMAPALVRLYEQMPEPKYVIAMGACTITGGMFSADSTTAVRGVD 146

Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
           +++PVD+Y+PGCPP  EA+   ++ L+KK+
Sbjct: 147 KLIPVDLYMPGCPPRPEAIFDAVIKLRKKV 176


>gi|256831780|ref|YP_003160507.1| NADH-quinone oxidoreductase, B subunit [Jonesia denitrificans DSM
           20603]
 gi|256685311|gb|ACV08204.1| NADH-quinone oxidoreductase, B subunit [Jonesia denitrificans DSM
           20603]
          Length = 183

 Score =  159 bits (403), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 75/144 (52%), Positives = 105/144 (72%), Gaps = 2/144 (1%)

Query: 37  GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95
           GF   S++ +    R GS+  +TFGLACCA+EMM  +  R+D+ RFG    RASPRQ+D+
Sbjct: 9   GFFTASLEDVAGLFRKGSMWPVTFGLACCAIEMMATASSRFDVARFGMEVFRASPRQADL 68

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
           MIVAG ++ KMA  +R+VYDQM EP++V+SMG CA+ GG ++ +Y++V+G D IVPVDIY
Sbjct: 69  MIVAGRVSQKMAPVVRQVYDQMAEPKWVLSMGVCASSGGMFN-NYAIVQGVDHIVPVDIY 127

Query: 156 VPGCPPTAEALIYGILLLQKKIRR 179
           +PGCPP  E LI  +L L K+++ 
Sbjct: 128 LPGCPPRPEMLINAMLELHKQVQE 151


>gi|57864900|gb|AAW57074.1| NADH dehydrogenase subunit K [cyanobacterium endosymbiont of
           Rhopalodia gibba]
          Length = 281

 Score =  159 bits (403), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 71/152 (46%), Positives = 108/152 (71%), Gaps = 2/152 (1%)

Query: 27  SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP 86
           S+++ +++ +  ++T+VD L  WAR  SL  + +G ACC +E       R+D +RFG  P
Sbjct: 58  SQVTQDLS-ENVILTTVDDLHNWARLSSLWPLLYGTACCFIEFAALIGSRFDFDRFGLVP 116

Query: 87  RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCA-NGGGYYHYSYSVVRG 145
           R+SPRQ+D++I AGT+T KMA AL R+Y+QMP+P+YVI+MG+C   GG +   S + VRG
Sbjct: 117 RSSPRQADLIITAGTITMKMAPALVRLYEQMPDPKYVIAMGACTITGGMFSSDSTTAVRG 176

Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
            D+++PVD+Y+PGCPP  EA+   I+ L+KK+
Sbjct: 177 VDKLIPVDVYIPGCPPRPEAIFDAIIKLRKKV 208


>gi|75248911|sp|Q8WI14|NDHK_PSINU RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
 gi|18389468|dbj|BAB84220.1| NADH dehydrogenase 27kD subunit [Psilotum nudum]
          Length = 207

 Score =  159 bits (403), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 71/152 (46%), Positives = 105/152 (69%), Gaps = 1/152 (0%)

Query: 27  SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP 86
           S +S   T    ++T+++    WAR  SL  + +G +CC +E       R+D +R+G  P
Sbjct: 10  SLVSKPNTSNSIILTNLNDFSNWARLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVP 69

Query: 87  RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRG 145
           R+SPRQ+D++I AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG
Sbjct: 70  RSSPRQADLIITAGTVTMKMAPSLIRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRG 129

Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
            D+++PVDIY+PGCPP  EA+I  ++ L+KK+
Sbjct: 130 VDKLIPVDIYLPGCPPKPEAIIDAVIKLRKKV 161


>gi|218440674|ref|YP_002379003.1| NADH dehydrogenase subunit B [Cyanothece sp. PCC 7424]
 gi|238065002|sp|B7KJ51|NDHK_CYAP7 RecName: Full=NAD(P)H-quinone oxidoreductase subunit K; AltName:
           Full=NAD(P)H dehydrogenase I subunit K; AltName:
           Full=NDH-1 subunit K; Short=NDH-K
 gi|218173402|gb|ACK72135.1| NADH-quinone oxidoreductase, B subunit [Cyanothece sp. PCC 7424]
          Length = 247

 Score =  159 bits (403), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 71/154 (46%), Positives = 109/154 (70%), Gaps = 2/154 (1%)

Query: 25  DFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF 84
           + S+++ +++ +  ++T+VD L  WAR  SL  + +G ACC +E       R+D +RFG 
Sbjct: 25  NHSQVTQDLS-ENVILTTVDDLYNWARLSSLWPLLYGTACCFIEFAALIGSRFDFDRFGL 83

Query: 85  APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCA-NGGGYYHYSYSVV 143
            PR+SPRQ+D++I AGT+T KMA AL R+Y+QMP+P+YVI+MG+C   GG +   S + V
Sbjct: 84  VPRSSPRQADLIITAGTITMKMAPALVRLYEQMPDPKYVIAMGACTITGGMFSSDSTTAV 143

Query: 144 RGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
           RG D+++PVD+Y+PGCPP  EA+   I+ L+KK+
Sbjct: 144 RGVDKLIPVDVYIPGCPPRPEAIFDAIVKLRKKV 177


>gi|21228592|ref|NP_634514.1| F420H2 dehydrogenase subunit [Methanosarcina mazei Go1]
 gi|7649014|gb|AAF65732.1|AF228525_2 F420H2 dehydrogenase subunit FpoB [Methanosarcina mazei Go1]
 gi|20907086|gb|AAM32186.1| F420H2 dehydrogenase subunit [Methanosarcina mazei Go1]
          Length = 184

 Score =  159 bits (403), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 73/159 (45%), Positives = 101/159 (63%), Gaps = 1/159 (0%)

Query: 20  EKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDL 79
           E+V    +  +S I H     T    ++ W R  SL +MT  + CC VEM+      YD 
Sbjct: 18  EEVPGVITTTTSAI-HNFLKKTKAQDIINWGRKNSLWFMTQPMGCCGVEMIATGCAHYDT 76

Query: 80  ERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS 139
           +RFG  PR SPR +DVMI++G +T K   AL+R++DQMP P++VI+MG CA  GG ++ S
Sbjct: 77  DRFGIIPRNSPRHADVMIISGYVTKKYLPALKRLWDQMPAPKWVIAMGDCAISGGPFYES 136

Query: 140 YSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           YS V+  D I P+D+Y+PGCPP  EALI G + LQ+KI+
Sbjct: 137 YSTVQNIDEIFPIDVYIPGCPPRPEALIQGFVELQEKIK 175


>gi|116075555|ref|ZP_01472814.1| NADH dehydrogenase subunit B [Synechococcus sp. RS9916]
 gi|116066870|gb|EAU72625.1| NADH dehydrogenase subunit B [Synechococcus sp. RS9916]
          Length = 255

 Score =  159 bits (403), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 71/143 (49%), Positives = 102/143 (71%), Gaps = 1/143 (0%)

Query: 36  KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDV 95
           +  ++TS+D L  WAR  SL  + +G ACC +E       R+D +RFG  PR+SPRQ+D+
Sbjct: 39  ENVILTSLDDLHNWARLSSLWPLLYGTACCFIEFAALIGSRFDFDRFGLVPRSSPRQADL 98

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPVDI 154
           +IVAGT+T KMA AL R+Y+QMPEP+YVI+MG+C   GG +   S + VRG D+++PVD+
Sbjct: 99  LIVAGTVTMKMAPALVRLYEQMPEPKYVIAMGACTITGGMFSADSTTAVRGVDKLIPVDL 158

Query: 155 YVPGCPPTAEALIYGILLLQKKI 177
           Y+PGCPP  EA+   ++ L+KK+
Sbjct: 159 YLPGCPPRPEAIFDAVIKLRKKV 181


>gi|154813768|ref|NP_569633.2| NADH dehydrogenase subunit K [Psilotum nudum]
          Length = 203

 Score =  159 bits (403), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 71/152 (46%), Positives = 105/152 (69%), Gaps = 1/152 (0%)

Query: 27  SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP 86
           S +S   T    ++T+++    WAR  SL  + +G +CC +E       R+D +R+G  P
Sbjct: 6   SLVSKPNTSNSIILTNLNDFSNWARLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVP 65

Query: 87  RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRG 145
           R+SPRQ+D++I AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG
Sbjct: 66  RSSPRQADLIITAGTVTMKMAPSLIRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRG 125

Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
            D+++PVDIY+PGCPP  EA+I  ++ L+KK+
Sbjct: 126 VDKLIPVDIYLPGCPPKPEAIIDAVIKLRKKV 157


>gi|332706504|ref|ZP_08426565.1| NADH-quinone oxidoreductase, B subunit [Lyngbya majuscula 3L]
 gi|332354388|gb|EGJ33867.1| NADH-quinone oxidoreductase, B subunit [Lyngbya majuscula 3L]
          Length = 248

 Score =  159 bits (403), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 71/143 (49%), Positives = 101/143 (70%), Gaps = 1/143 (0%)

Query: 36  KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDV 95
           +  ++T+VD L  WAR  SL  M +G ACC +E       R+D +RFG  PR+SPRQ+D+
Sbjct: 35  ENVILTTVDDLYNWARLSSLWPMLYGTACCFIEFAAMIGSRFDFDRFGLVPRSSPRQADL 94

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPVDI 154
           +I AGT+T KM  AL R+Y+QMPEP+YVI+MG+C   GG +   S + VRG D+++PVD+
Sbjct: 95  IITAGTITMKMGPALVRLYEQMPEPKYVIAMGACTITGGMFSVDSPTAVRGVDKLIPVDV 154

Query: 155 YVPGCPPTAEALIYGILLLQKKI 177
           Y+PGCPP  EA++  I+ L+KK+
Sbjct: 155 YIPGCPPRPEAIMDAIVKLRKKV 177


>gi|77164635|ref|YP_343160.1| NADH dehydrogenase subunit B [Nitrosococcus oceani ATCC 19707]
 gi|254434174|ref|ZP_05047682.1| NADH-quinone oxidoreductase, B subunit subfamily, putative
           [Nitrosococcus oceani AFC27]
 gi|123594559|sp|Q3JC16|NUOB1_NITOC RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName:
           Full=NADH dehydrogenase I subunit B 1; AltName:
           Full=NDH-1 subunit B 1
 gi|76882949|gb|ABA57630.1| NADH dehydrogenase subunit B [Nitrosococcus oceani ATCC 19707]
 gi|207090507|gb|EDZ67778.1| NADH-quinone oxidoreductase, B subunit subfamily, putative
           [Nitrosococcus oceani AFC27]
          Length = 212

 Score =  159 bits (403), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 77/165 (46%), Positives = 110/165 (66%), Gaps = 6/165 (3%)

Query: 14  QSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQAS 73
           Q++ S+E+    F     +   +  L   +  LV W R  SL    FGL+CC VEM+ + 
Sbjct: 9   QAATSIEQSKGSFE----DAIRRNLLFAQLQDLVAWGRKNSLWPYNFGLSCCYVEMVTSF 64

Query: 74  MPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANG 132
             +YD+ RFG    RA+PR++D+M+++GT+  KMA  ++R+Y+QM EPR+VISMGSCAN 
Sbjct: 65  TSKYDIARFGAEVIRATPREADLMVISGTVFIKMAPVIKRLYEQMMEPRWVISMGSCANS 124

Query: 133 GGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
           GG Y   YSVV+G D+ +PVD+YVPGCPP  +A + G+LLLQ+ I
Sbjct: 125 GGMYDI-YSVVQGVDKFLPVDVYVPGCPPRPDAFLEGLLLLQEAI 168


>gi|22711920|ref|NP_683807.1| NADH dehydrogenase subunit K [Chaetosphaeridium globosum]
 gi|75272587|sp|Q8M9X9|NDHK_CHAGL RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
 gi|22416924|gb|AAM96524.1| subunit K of NADH-ubiquinone oxidoreductase [Chaetosphaeridium
           globosum]
          Length = 242

 Score =  159 bits (403), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 72/158 (45%), Positives = 108/158 (68%), Gaps = 6/158 (3%)

Query: 21  KVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLE 80
           K  +D   +S+ I     ++T+++    WAR  SL  + +G +CC +E       R+D +
Sbjct: 26  KTSSDKEELSNSI-----ILTTLNDFSNWARLSSLWPLLYGTSCCFIEFAALIGSRFDFD 80

Query: 81  RFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-S 139
           R+G  PR+SPRQ+D++I AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   S
Sbjct: 81  RYGLVPRSSPRQADLIITAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDS 140

Query: 140 YSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
           YS VRG D+++PVDIY+PGCPP  EA+I  ++ L+KK+
Sbjct: 141 YSTVRGVDKLIPVDIYLPGCPPKPEAIIDAVIKLRKKV 178


>gi|33239776|ref|NP_874718.1| NADH dehydrogenase subunit B [Prochlorococcus marinus subsp.
           marinus str. CCMP1375]
 gi|81664982|sp|Q7VDP4|NDHK_PROMA RecName: Full=NAD(P)H-quinone oxidoreductase subunit K; AltName:
           Full=NAD(P)H dehydrogenase I subunit K; AltName:
           Full=NDH-1 subunit K; Short=NDH-K
 gi|33237302|gb|AAP99370.1| NAD(P)H-quinone oxidoreductase subunit K [Prochlorococcus marinus
           subsp. marinus str. CCMP1375]
          Length = 242

 Score =  159 bits (402), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 71/150 (47%), Positives = 108/150 (72%), Gaps = 2/150 (1%)

Query: 29  ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88
           ++S+++ +  ++TS+D L  WAR  SL  + +G ACC +E       R+D +RFG  PR+
Sbjct: 26  VTSDLS-ENIILTSLDDLHNWARLSSLWPLLYGTACCFIEFAALIGSRFDFDRFGLVPRS 84

Query: 89  SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCD 147
           SPRQ+D++IVAGT+T KMA AL R+Y+QMP+P+YVI+MG+C   GG +   S + VRG D
Sbjct: 85  SPRQADLLIVAGTVTMKMAPALVRLYEQMPDPKYVIAMGACTITGGMFSADSTTAVRGVD 144

Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
           +++PVD+Y+PGCPP  EA+   ++ L+KK+
Sbjct: 145 KLIPVDLYLPGCPPRPEAIFDAVIKLRKKV 174


>gi|108773214|ref|YP_635742.1| NADH dehydrogenase subunit K [Chara vulgaris]
 gi|122231312|sp|Q1ACK5|NDHK_CHAVU RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
 gi|77157870|gb|ABA61911.1| 27 kDa subunit of NADH-ubiquinone oxidoreductase [Chara vulgaris]
          Length = 244

 Score =  159 bits (402), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 74/167 (44%), Positives = 113/167 (67%), Gaps = 7/167 (4%)

Query: 18  SLEKVDADFSRISSE------ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQ 71
           SL++ + DF   S+E      I     ++T+++ L  WAR  SL  + +G +CC +E   
Sbjct: 14  SLKETNHDFLINSTERLTTNQILSTSVILTTMNDLTNWARLSSLWPLLYGTSCCFIEFAS 73

Query: 72  ASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCAN 131
               R+D +R+G  PR+SPRQ+D++I AGT+T KMA +L R+Y+QM EP+YVI+MG+C  
Sbjct: 74  LIGSRFDFDRYGLVPRSSPRQADLIITAGTVTMKMAPSLVRLYEQMAEPKYVIAMGACTI 133

Query: 132 GGGYYHY-SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
            GG +   SYS VRG D+++PV++Y+PGCPP  EA+I G++ L+K+I
Sbjct: 134 TGGMFSTDSYSTVRGVDKLIPVNVYLPGCPPKPEAIIDGVIKLRKQI 180


>gi|307154794|ref|YP_003890178.1| NADH-quinone oxidoreductase subunit B [Cyanothece sp. PCC 7822]
 gi|306985022|gb|ADN16903.1| NADH-quinone oxidoreductase, B subunit [Cyanothece sp. PCC 7822]
          Length = 248

 Score =  159 bits (402), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 75/175 (42%), Positives = 115/175 (65%), Gaps = 4/175 (2%)

Query: 4   TTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLA 63
           TT +   I  Q    L  ++   ++++ +++ +  ++T+VD L  WAR  SL  M +G A
Sbjct: 6   TTQSDLFIQQQKEQILNPINR--TKVTQDLS-ENVILTTVDDLYNWARLSSLWPMLYGTA 62

Query: 64  CCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYV 123
           CC +E       R+D +RFG  PR+SPRQ+D++I AGT+T KM  AL R+Y+QMP+P+YV
Sbjct: 63  CCFIEFAALIGSRFDFDRFGLVPRSSPRQADLIITAGTITMKMGPALVRLYEQMPDPKYV 122

Query: 124 ISMGSCA-NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
           I+MG+C   GG +   S + VRG D+++PVD+Y+PGCPP  EA+   I+ L+KK+
Sbjct: 123 IAMGACTITGGMFSSDSTTAVRGVDKLIPVDVYIPGCPPRPEAIFDAIIKLRKKV 177


>gi|159902860|ref|YP_001550204.1| NADH dehydrogenase subunit B [Prochlorococcus marinus str. MIT
           9211]
 gi|218527920|sp|A9BDU0|NDHK_PROM4 RecName: Full=NAD(P)H-quinone oxidoreductase subunit K; AltName:
           Full=NAD(P)H dehydrogenase I subunit K; AltName:
           Full=NDH-1 subunit K; Short=NDH-K
 gi|159888036|gb|ABX08250.1| putative respiratory-chain NADH dehydrogenase subunit
           [Prochlorococcus marinus str. MIT 9211]
          Length = 252

 Score =  159 bits (402), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 71/150 (47%), Positives = 108/150 (72%), Gaps = 2/150 (1%)

Query: 29  ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88
           +++E++ +  ++TS+D L  WAR  SL  + +G ACC +E       R+D +RFG  PR+
Sbjct: 39  VTNELS-ENIILTSLDDLHNWARLSSLWPLLYGTACCFIEFAALIGSRFDFDRFGLVPRS 97

Query: 89  SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCD 147
           SPRQ+D++IVAGT+T KMA AL R+Y+QMP+P+YVI+MG+C   GG +   S + VRG D
Sbjct: 98  SPRQADLLIVAGTVTMKMAPALVRLYEQMPDPKYVIAMGACTITGGMFSADSTTAVRGVD 157

Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
           +++PVD+Y+PGCPP  EA+   ++ L+KK+
Sbjct: 158 KLIPVDLYLPGCPPRPEAIFDAVIKLRKKV 187


>gi|260436695|ref|ZP_05790665.1| NAD(P)H-quinone oxidoreductase subunit K [Synechococcus sp. WH
           8109]
 gi|260414569|gb|EEX07865.1| NAD(P)H-quinone oxidoreductase subunit K [Synechococcus sp. WH
           8109]
          Length = 246

 Score =  159 bits (402), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 71/143 (49%), Positives = 102/143 (71%), Gaps = 1/143 (0%)

Query: 36  KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDV 95
           +  ++TS+D L  WAR  SL  + +G ACC +E       R+D +RFG  PR+SPRQ+D+
Sbjct: 34  ENVILTSLDDLHNWARLSSLWPLLYGTACCFIEFAALLGSRFDFDRFGLVPRSSPRQADL 93

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPVDI 154
           +IVAGT+T KMA AL R+Y+QMPEP+YVI+MG+C   GG +   S + VRG D+++PVD+
Sbjct: 94  LIVAGTVTMKMAPALVRLYEQMPEPKYVIAMGACTITGGMFSADSTTAVRGVDKLIPVDL 153

Query: 155 YVPGCPPTAEALIYGILLLQKKI 177
           Y+PGCPP  EA+   ++ L+KK+
Sbjct: 154 YLPGCPPRPEAIFDAVIKLRKKV 176


>gi|218886689|ref|YP_002436010.1| NADH-quinone oxidoreductase subunit beta [Desulfovibrio vulgaris
           str. 'Miyazaki F']
 gi|238065123|sp|B8DS03|NUOB_DESVM RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|218757643|gb|ACL08542.1| NADH-quinone oxidoreductase, B subunit [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 187

 Score =  159 bits (402), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 78/141 (55%), Positives = 102/141 (72%), Gaps = 3/141 (2%)

Query: 40  VTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMIV 98
           V  V +++   R  SL  MTFGLACCA+EMM   M R+D+ RFG    R SPRQSD+MIV
Sbjct: 27  VAPVQKILDVCRAMSLWPMTFGLACCAIEMMAVGMARFDISRFGAEVFRPSPRQSDLMIV 86

Query: 99  AGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS--YSVVRGCDRIVPVDIYV 156
           AGT+T KMA AL R+Y+QMP PRYV+++G+CA  GG +++   Y++V G D +VPVD+YV
Sbjct: 87  AGTVTRKMAPALVRLYEQMPAPRYVMALGNCAISGGPFNFEGQYAIVEGVDNLVPVDVYV 146

Query: 157 PGCPPTAEALIYGILLLQKKI 177
           PGCPP  EAL+ G+  +Q KI
Sbjct: 147 PGCPPRPEALLEGLFQIQHKI 167


>gi|218245900|ref|YP_002371271.1| NADH dehydrogenase subunit B [Cyanothece sp. PCC 8801]
 gi|257058948|ref|YP_003136836.1| NADH dehydrogenase subunit B [Cyanothece sp. PCC 8802]
 gi|238065003|sp|B7K0X4|NDHK_CYAP8 RecName: Full=NAD(P)H-quinone oxidoreductase subunit K; AltName:
           Full=NAD(P)H dehydrogenase I subunit K; AltName:
           Full=NDH-1 subunit K; Short=NDH-K
 gi|218166378|gb|ACK65115.1| NADH-quinone oxidoreductase, B subunit [Cyanothece sp. PCC 8801]
 gi|256589114|gb|ACV00001.1| NADH-quinone oxidoreductase, B subunit [Cyanothece sp. PCC 8802]
          Length = 250

 Score =  159 bits (402), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 70/143 (48%), Positives = 101/143 (70%), Gaps = 1/143 (0%)

Query: 36  KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDV 95
           +  ++T+VD L  WAR  SL  + +G ACC +E       R+D +RFG  PR+SPRQ+D+
Sbjct: 35  ENIILTTVDDLHNWARLSSLWPLLYGTACCFIEFAALIGSRFDFDRFGLVPRSSPRQADL 94

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCA-NGGGYYHYSYSVVRGCDRIVPVDI 154
           +I AGT+T KMA AL R+Y++MPEP+YVI+MG+C   GG +   S + VRG D+++PVD+
Sbjct: 95  IITAGTITMKMAPALVRLYEEMPEPKYVIAMGACTITGGMFSSDSTTAVRGVDKLIPVDV 154

Query: 155 YVPGCPPTAEALIYGILLLQKKI 177
           Y+PGCPP  EA+   I+ L+KK+
Sbjct: 155 YIPGCPPRPEAIFDAIIKLRKKV 177


>gi|224178049|ref|YP_002600947.1| 27 kDa subunit of NADH-ubiquinone oxidoreductase [Pyramimonas
           parkeae]
 gi|215882716|gb|ACJ71089.1| 27 kDa subunit of NADH-ubiquinone oxidoreductase [Pyramimonas
           parkeae]
          Length = 232

 Score =  159 bits (402), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 75/173 (43%), Positives = 113/173 (65%), Gaps = 12/173 (6%)

Query: 6   VNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACC 65
           +N+K+   ++S    KV  D S           + T+++ L  WAR  SL  + +G +CC
Sbjct: 3   LNEKL---KNSLESSKVTEDLS--------TNVIFTTLNDLHNWARLSSLWPLLYGTSCC 51

Query: 66  AVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVIS 125
            +E       R+D +RFG  PR+SPRQ+D++I AGT+T KMA +L R+Y+QMPEP+YVI+
Sbjct: 52  FIEFASLIGSRFDFDRFGLVPRSSPRQADLIITAGTVTMKMAPSLVRLYEQMPEPKYVIA 111

Query: 126 MGSCANGGGYYHY-SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
           MG+C   GG +   SY+ VRG D+++PVD+Y+PGCPP  EA+I  ++ L+KK+
Sbjct: 112 MGACTITGGMFSTDSYTTVRGVDKLIPVDVYLPGCPPKPEAIIDAVIKLRKKV 164


>gi|87123074|ref|ZP_01078925.1| putative respiratory-chain NADH dehydrogenase subunit
           [Synechococcus sp. RS9917]
 gi|86168794|gb|EAQ70050.1| putative respiratory-chain NADH dehydrogenase subunit
           [Synechococcus sp. RS9917]
          Length = 246

 Score =  159 bits (402), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 72/150 (48%), Positives = 108/150 (72%), Gaps = 2/150 (1%)

Query: 29  ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88
           ++S+++ +  ++TS+D L  WAR  SL  + +G ACC +E       R+D +RFG  PR+
Sbjct: 22  VTSDLS-ENVILTSLDDLHNWARLSSLWPLLYGTACCFIEFAALIGSRFDFDRFGLVPRS 80

Query: 89  SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCD 147
           SPRQ+D++IVAGT+T KMA AL R+Y+QMPEP+YVI+MG+C   GG +   S + VRG D
Sbjct: 81  SPRQADLLIVAGTVTMKMAPALVRLYEQMPEPKYVIAMGACTITGGMFSADSTTAVRGVD 140

Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
           +++PVD+Y+PGCPP  EA+   ++ L+KK+
Sbjct: 141 KLIPVDLYLPGCPPRPEAIFDAVIKLRKKV 170


>gi|320352991|ref|YP_004194330.1| NADH dehydrogenase subunit B [Desulfobulbus propionicus DSM 2032]
 gi|320121493|gb|ADW17039.1| NADH dehydrogenase subunit B [Desulfobulbus propionicus DSM 2032]
          Length = 165

 Score =  159 bits (401), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 76/140 (54%), Positives = 101/140 (72%), Gaps = 3/140 (2%)

Query: 41  TSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMIVA 99
             +D+L+   R  SL  MTFGLACCA+EMM     RYD+ RFG    R SPRQSDVMIVA
Sbjct: 14  AQLDKLLNLGRANSLWPMTFGLACCAIEMMCTGGSRYDISRFGAEVFRPSPRQSDVMIVA 73

Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY--SYSVVRGCDRIVPVDIYVP 157
           GT+  K+  A++ +YDQMPEP++VI+MG+CA  GG +    +Y+VV G D++ PVD+Y+P
Sbjct: 74  GTINKKLELAVKTLYDQMPEPKWVIAMGNCAISGGPFKVKENYNVVEGADKLFPVDVYIP 133

Query: 158 GCPPTAEALIYGILLLQKKI 177
           GCPP  EAL+ GI+ L++KI
Sbjct: 134 GCPPRPEALLEGIMALEEKI 153


>gi|114329660|ref|YP_740479.1| NADH-plastoquinone oxidoreductase subunit K [Citrus sinensis]
 gi|122166179|sp|Q09MH4|NDHK_CITSI RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
 gi|113952626|gb|ABI49024.1| NADH-plastoquinone oxidoreductase subunit K [Citrus sinensis]
          Length = 227

 Score =  159 bits (401), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 71/147 (48%), Positives = 102/147 (69%), Gaps = 1/147 (0%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
           T   F+ T+ + L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPRQ+
Sbjct: 13  TPNSFISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 72

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152
           D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++PV
Sbjct: 73  DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 132

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179
           D+Y+PGCPP  EA+I  I  L+KKI R
Sbjct: 133 DVYLPGCPPKPEAVIDAITKLRKKISR 159


>gi|11467814|ref|NP_050865.1| NADH dehydrogenase subunit K [Nephroselmis olivacea]
 gi|59798437|sp|Q9TKY0|NDHK_NEPOL RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
 gi|5880743|gb|AAD54836.1|AF137379_59 subunit K of NADH-ubiquinone oxidoreductase [Nephroselmis olivacea]
          Length = 237

 Score =  159 bits (401), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 74/169 (43%), Positives = 113/169 (66%), Gaps = 2/169 (1%)

Query: 10  IISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEM 69
           +IS  S+          S I+ E+ +   ++T+++ L  WAR  SL  + +G +CC +E 
Sbjct: 2   VISSLSNSQPLNAPVSSSPITQELAN-NLILTTLNDLYNWARLSSLWPLLYGTSCCFIEF 60

Query: 70  MQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSC 129
                 R+D +RFG  PR+SPRQ+D++I AGT+T KMA +L R+Y+QMP+P+YVI+MG+C
Sbjct: 61  ACLIGSRFDFDRFGLVPRSSPRQADLIITAGTVTMKMAPSLVRLYEQMPDPKYVIAMGAC 120

Query: 130 ANGGGYYHY-SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
              GG +   SYS VRG D+++PVD+Y+PGCPP  EA+I  ++ L+KK+
Sbjct: 121 TITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEAIIDAVIKLRKKV 169


>gi|87300572|ref|ZP_01083414.1| NADH dehydrogenase beta subunit [Synechococcus sp. WH 5701]
 gi|87284443|gb|EAQ76395.1| NADH dehydrogenase beta subunit [Synechococcus sp. WH 5701]
          Length = 253

 Score =  159 bits (401), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 74/155 (47%), Positives = 109/155 (70%), Gaps = 5/155 (3%)

Query: 29  ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88
           ++S+++ +  ++TS+D L  WAR  SL  + +G ACC +E       R+D +RFG  PR+
Sbjct: 35  VTSDLS-ENVILTSLDDLHNWARLSSLWPLLYGTACCFIEFAALIGSRFDFDRFGLVPRS 93

Query: 89  SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCD 147
           SPRQ+D++I AGT+T KMA AL R+Y+QMPEP+YVI+MG+C   GG +   S + VRG D
Sbjct: 94  SPRQADLLITAGTVTMKMAPALVRLYEQMPEPKYVIAMGACTITGGMFSADSTTAVRGVD 153

Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
           +++PVD+Y+PGCPP  EA+   ++ L+KK   VGN
Sbjct: 154 KLIPVDLYIPGCPPRPEAIFDAVIKLRKK---VGN 185


>gi|290489722|gb|ADD31245.1| NADH-plastoquinone oxidoreductase subunit K protein [Rhododendron
           simsii]
          Length = 225

 Score =  159 bits (401), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 71/148 (47%), Positives = 103/148 (69%), Gaps = 1/148 (0%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           IT    + T+++ L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPRQ
Sbjct: 12  ITQNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQ 71

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVP 151
           +D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++P
Sbjct: 72  ADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIP 131

Query: 152 VDIYVPGCPPTAEALIYGILLLQKKIRR 179
           VD+Y+PGCPP  EA+I  I  L+KKI R
Sbjct: 132 VDVYLPGCPPKPEAVIDAITKLRKKISR 159


>gi|67925382|ref|ZP_00518732.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit [Crocosphaera
           watsonii WH 8501]
 gi|67852778|gb|EAM48187.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit [Crocosphaera
           watsonii WH 8501]
          Length = 247

 Score =  159 bits (401), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 70/152 (46%), Positives = 108/152 (71%), Gaps = 2/152 (1%)

Query: 27  SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP 86
           S+++ +++ +  ++T+VD L  WAR  SL  + +G ACC +E       R+D +RFG  P
Sbjct: 27  SQVTQDLS-ENIILTTVDDLHNWARLSSLWPLLYGTACCFIEFAALIGSRFDFDRFGLVP 85

Query: 87  RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCA-NGGGYYHYSYSVVRG 145
           R+SPRQ+D++I AGT+T KMA AL R+Y++MP+P+YVI+MG+C   GG +   S + VRG
Sbjct: 86  RSSPRQADLLITAGTVTMKMAPALVRLYEEMPDPKYVIAMGACTITGGMFSSDSTTAVRG 145

Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
            D+++PVD+Y+PGCPP  EA+   I+ L+KK+
Sbjct: 146 VDKLIPVDVYIPGCPPRPEAIFDAIIKLRKKV 177


>gi|317968579|ref|ZP_07969969.1| NADH dehydrogenase subunit B [Synechococcus sp. CB0205]
          Length = 249

 Score =  159 bits (401), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 74/155 (47%), Positives = 110/155 (70%), Gaps = 5/155 (3%)

Query: 29  ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88
           ++S+++ +  ++T++D L  WAR  SL  + +G ACC +E       R+D +RFG  PR+
Sbjct: 35  VTSDLS-ENVILTTLDDLHNWARLSSLWPLLYGTACCFIEFAALIGSRFDFDRFGLVPRS 93

Query: 89  SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCD 147
           SPRQ+D++IVAGT+T KMA AL R+Y+QMPEP+YVI+MG+C   GG +   S + VRG D
Sbjct: 94  SPRQADLLIVAGTVTMKMAPALVRLYEQMPEPKYVIAMGACTITGGMFSADSTTAVRGVD 153

Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
           +++PVD+Y+PGCPP  EA+   ++ L+KK   VGN
Sbjct: 154 KLIPVDLYLPGCPPRPEAIFDAVVKLRKK---VGN 185


>gi|307822802|ref|ZP_07653033.1| NADH-quinone oxidoreductase, B subunit [Methylobacter tundripaludum
           SV96]
 gi|307736406|gb|EFO07252.1| NADH-quinone oxidoreductase, B subunit [Methylobacter tundripaludum
           SV96]
          Length = 212

 Score =  159 bits (401), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 74/148 (50%), Positives = 103/148 (69%), Gaps = 2/148 (1%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RAS 89
            E   + FL   ++ +V W ++ S+    FGL+CC VEM  A   R+D+ RFG    R S
Sbjct: 22  EEALRRNFLFARLEDMVAWGQSNSVWPFNFGLSCCYVEMATAFTSRHDIARFGSEVIRGS 81

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQ+D+++++GT+  KMA  ++R+YDQ+ EPR+VISMGSCAN GG Y   YSVV+G D+ 
Sbjct: 82  PRQADLIVISGTVFRKMAPVVKRLYDQLLEPRWVISMGSCANSGGMYDI-YSVVQGVDKF 140

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKI 177
           +PVD+YVPGCPP  EAL+ G++LLQ  I
Sbjct: 141 LPVDVYVPGCPPRPEALLQGLMLLQDAI 168


>gi|220910063|ref|YP_002485374.1| NADH dehydrogenase subunit B [Cyanothece sp. PCC 7425]
 gi|238065001|sp|B8HLE8|NDHK2_CYAP4 RecName: Full=NAD(P)H-quinone oxidoreductase subunit K 2; AltName:
           Full=NAD(P)H dehydrogenase I subunit K 2; AltName:
           Full=NDH-1 subunit K 2; Short=NDH-K 2
 gi|219866674|gb|ACL47013.1| NADH-quinone oxidoreductase, B subunit [Cyanothece sp. PCC 7425]
          Length = 259

 Score =  159 bits (401), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 69/143 (48%), Positives = 102/143 (71%), Gaps = 1/143 (0%)

Query: 36  KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDV 95
           +  ++TS+D +  WAR  S+  + +G ACC +E       R+D+ERFG  PRASPRQ+D+
Sbjct: 24  ENIILTSLDDIYNWARISSIYPLMYGTACCFIEFAAMIASRFDMERFGMFPRASPRQADL 83

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPVDI 154
           +I+AGTLT +MA   RR+YDQMPEP+YVI+MG+C   GG +   S + +RG D+++P+D+
Sbjct: 84  IILAGTLTMQMAVPTRRLYDQMPEPKYVIAMGACMITGGMFSADSPTALRGADKLLPIDV 143

Query: 155 YVPGCPPTAEALIYGILLLQKKI 177
           Y+PGCPP  EA++  +  L+KKI
Sbjct: 144 YIPGCPPRPEAILDAVTKLRKKI 166


>gi|95928469|ref|ZP_01311217.1| NADH-quinone oxidoreductase, B subunit [Desulfuromonas acetoxidans
           DSM 684]
 gi|95135740|gb|EAT17391.1| NADH-quinone oxidoreductase, B subunit [Desulfuromonas acetoxidans
           DSM 684]
          Length = 196

 Score =  159 bits (401), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 78/137 (56%), Positives = 101/137 (73%), Gaps = 3/137 (2%)

Query: 44  DQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTL 102
           D+++   R  SL  MTFGLACCA+EMM + M R+D+ R+G    R SPRQSD+MIVAGT+
Sbjct: 44  DKILNLCRANSLWPMTFGLACCAIEMMCSGMARFDISRYGAEVFRPSPRQSDLMIVAGTV 103

Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYY--HYSYSVVRGCDRIVPVDIYVPGCP 160
             KMA A+  +Y+QMP PRYVI++G+CA  GG +    +Y VV G D+++PVD+YVPGCP
Sbjct: 104 NKKMAPAVVTLYEQMPAPRYVIALGNCAISGGPFAVEANYDVVLGVDQLIPVDVYVPGCP 163

Query: 161 PTAEALIYGILLLQKKI 177
           P  EALI GIL LQ+KI
Sbjct: 164 PRPEALIEGILQLQEKI 180


>gi|297837993|ref|XP_002886878.1| NADH dehydrogenase subunit K [Arabidopsis lyrata subsp. lyrata]
 gi|297332719|gb|EFH63137.1| NADH dehydrogenase subunit K [Arabidopsis lyrata subsp. lyrata]
          Length = 225

 Score =  159 bits (401), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 71/147 (48%), Positives = 103/147 (70%), Gaps = 1/147 (0%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
           T K  + T+++ L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPRQ+
Sbjct: 13  TKKSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 72

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152
           D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++PV
Sbjct: 73  DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 132

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179
           D+Y+PGCPP  EA+I  I  L+KKI R
Sbjct: 133 DVYLPGCPPKPEAVIDAITKLRKKIAR 159


>gi|254432198|ref|ZP_05045901.1| NADH dehydrogenase i chain b or ndhk [Cyanobium sp. PCC 7001]
 gi|197626651|gb|EDY39210.1| NADH dehydrogenase i chain b or ndhk [Cyanobium sp. PCC 7001]
          Length = 279

 Score =  158 bits (400), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 74/155 (47%), Positives = 110/155 (70%), Gaps = 5/155 (3%)

Query: 29  ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88
           ++S+++ +  ++T++D L  WAR  SL  + +G ACC +E       R+D +RFG  PR+
Sbjct: 38  VTSDLS-ENVILTTLDDLHNWARLSSLWPLLYGTACCFIEFAALIGSRFDFDRFGLVPRS 96

Query: 89  SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCD 147
           SPRQ+D++IVAGT+T KMA AL R+Y+QMPEP+YVI+MG+C   GG +   S + VRG D
Sbjct: 97  SPRQADLLIVAGTVTMKMAPALVRLYEQMPEPKYVIAMGACTITGGMFSADSTTAVRGVD 156

Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
           +++PVD+Y+PGCPP  EA+   ++ L+KK   VGN
Sbjct: 157 KLIPVDLYLPGCPPRPEAIFDAVIKLRKK---VGN 188


>gi|16330876|ref|NP_441604.1| NADH dehydrogenase subunit B [Synechocystis sp. PCC 6803]
 gi|131406|sp|P19050|NDHK1_SYNY3 RecName: Full=NAD(P)H-quinone oxidoreductase subunit K 1; AltName:
           Full=NAD(P)H dehydrogenase I subunit K 1; AltName:
           Full=NDH-1 subunit K 1; Short=NDH-K 1; Flags: Precursor
 gi|48047|emb|CAA35485.1| unnamed protein product [Synechocystis sp. PCC 6803]
 gi|1653370|dbj|BAA18284.1| NADH dehydrogenase subunit; NdhK [Synechocystis sp. PCC 6803]
          Length = 248

 Score =  158 bits (400), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 71/155 (45%), Positives = 109/155 (70%), Gaps = 2/155 (1%)

Query: 24  ADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFG 83
           A  S+++ +++ +  ++T+VD L  WA+  SL  + +G ACC +E       R+D +RFG
Sbjct: 23  ASRSQVTQDLS-ENVILTTVDDLYNWAKLSSLWPLLYGTACCFIEFAALIGSRFDFDRFG 81

Query: 84  FAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCA-NGGGYYHYSYSV 142
             PR+SPRQ+D++I AGT+T KMA AL R+Y++MPEP+YVI+MG+C   GG +   S + 
Sbjct: 82  LVPRSSPRQADLIITAGTITMKMAPALVRLYEEMPEPKYVIAMGACTITGGMFSSDSTTA 141

Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
           VRG D+++PVD+Y+PGCPP  EA+   I+ L+KK+
Sbjct: 142 VRGVDKLIPVDVYIPGCPPRPEAIFDAIIKLRKKV 176


>gi|154795217|ref|NP_054940.3| NADH dehydrogenase subunit K [Spinacia oleracea]
 gi|218512134|sp|Q9M3M0|NDHK_SPIOL RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
          Length = 227

 Score =  158 bits (400), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 71/149 (47%), Positives = 102/149 (68%), Gaps = 1/149 (0%)

Query: 32  EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPR 91
           +I     + T+ + L  W+R  SL  + +G +CC +E       R+D +R+G  PRASPR
Sbjct: 11  QIAQNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRASPR 70

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIV 150
           Q+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++
Sbjct: 71  QADLILTAGTVTMKMAPSLLRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLI 130

Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           PVD+Y+PGCPP  EA+I  I  L+KKI R
Sbjct: 131 PVDVYLPGCPPKPEAVIDAITKLRKKISR 159


>gi|313199634|ref|YP_004021250.1| no product string in file [Isoetes flaccida]
 gi|291575363|gb|ADE18076.1| no product string in file [Isoetes flaccida]
          Length = 250

 Score =  158 bits (400), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 71/154 (46%), Positives = 105/154 (68%), Gaps = 1/154 (0%)

Query: 27  SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP 86
           S +    T    ++T+ + L  WAR  SL  + +G +CC +E       R+D +R+G  P
Sbjct: 27  SSLLDRTTPNSIVLTTFNDLSNWARLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVP 86

Query: 87  RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRG 145
           R+SPRQ+D++I AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG
Sbjct: 87  RSSPRQADLIITAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRG 146

Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
            D+++PVD+Y+PGCPP  EA+I  I+ L+K++ R
Sbjct: 147 VDKLIPVDVYLPGCPPKPEAIIDAIVKLRKRVAR 180


>gi|56750378|ref|YP_171079.1| NADH dehydrogenase subunit B [Synechococcus elongatus PCC 6301]
 gi|81299990|ref|YP_400198.1| NADH dehydrogenase subunit B [Synechococcus elongatus PCC 7942]
 gi|81596704|sp|Q5N560|NDHK_SYNP6 RecName: Full=NAD(P)H-quinone oxidoreductase subunit K; AltName:
           Full=NAD(P)H dehydrogenase I subunit K; AltName:
           Full=NDH-1 subunit K; Short=NDH-K
 gi|123556951|sp|Q31P08|NDHK_SYNE7 RecName: Full=NAD(P)H-quinone oxidoreductase subunit K; AltName:
           Full=NAD(P)H dehydrogenase I subunit K; AltName:
           Full=NDH-1 subunit K; Short=NDH-K
 gi|56685337|dbj|BAD78559.1| NADH dehydrogenase subunit NdhK [Synechococcus elongatus PCC 6301]
 gi|81168871|gb|ABB57211.1| NADH-quinone oxidoreductase, B subunit [Synechococcus elongatus PCC
           7942]
          Length = 235

 Score =  158 bits (400), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 74/150 (49%), Positives = 104/150 (69%), Gaps = 4/150 (2%)

Query: 32  EITH---KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88
           EIT    +  ++T++D L  WAR  SL  + +G ACC +E       R+D +RFG  PR 
Sbjct: 17  EITQGLSENVILTTLDDLYNWARLSSLWPLMYGTACCFIEFAALIGSRFDFDRFGLVPRC 76

Query: 89  SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCD 147
           SPRQ+D++I AGT+T KMA AL R+Y+QMPEP+YVI+MG+C   GG +   S + VRG D
Sbjct: 77  SPRQADLLITAGTVTMKMAPALVRLYEQMPEPKYVIAMGACTITGGMFSADSTTTVRGVD 136

Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
           +++PVD+Y+PGCPP  EA+I  I+ L+KK+
Sbjct: 137 KLLPVDVYIPGCPPRPEAIIDAIVKLRKKV 166


>gi|53804524|ref|YP_113819.1| NADH dehydrogenase subunit B [Methylococcus capsulatus str. Bath]
 gi|81682183|sp|Q608X8|NUOB_METCA RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|53758285|gb|AAU92576.1| NADH dehydrogenase I, B subunit [Methylococcus capsulatus str.
           Bath]
          Length = 213

 Score =  158 bits (400), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 73/148 (49%), Positives = 102/148 (68%), Gaps = 2/148 (1%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RAS 89
            E   +  L   +D LV W R  S+    FGL+CC VEM  A   R+D+ RFG    RAS
Sbjct: 22  EEALRRNILFARLDDLVRWGRKNSIWPFNFGLSCCYVEMATAFTSRFDIARFGSEVIRAS 81

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQ+D+M+++GT+  KMA  ++ +YDQ+ EP+++ISMGSCAN GG Y   YSVV+G D+ 
Sbjct: 82  PRQADLMVISGTVFRKMAPVVKHLYDQLLEPKWIISMGSCANSGGMYDI-YSVVQGVDKF 140

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKI 177
           +PVD+YVPGCPP  EAL+ G+++LQ+ +
Sbjct: 141 LPVDVYVPGCPPRPEALLEGLMMLQESV 168


>gi|32399383|emb|CAD28725.1| photosystem II G protein [Calycanthus floridus var. glaucus]
          Length = 248

 Score =  158 bits (400), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 74/174 (42%), Positives = 110/174 (63%), Gaps = 2/174 (1%)

Query: 7   NQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCA 66
           NQ    G+ S        +F  +    T    + T+++ L  W+R  SL  + +G +CC 
Sbjct: 10  NQNQKEGKDSIETVMNSTEFPLLD-RTTQNSVISTTLNDLSNWSRLSSLWPLLYGTSCCF 68

Query: 67  VEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISM 126
           +E       R+D +R+G  PR+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+M
Sbjct: 69  IEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAM 128

Query: 127 GSCANGGGYYHY-SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           G+C   GG +   SYS VRG D+++PVD+Y+PGCPP  EA+I  I  L+KK+ R
Sbjct: 129 GACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKKVSR 182


>gi|284034168|ref|YP_003384099.1| NADH-quinone oxidoreductase subunit B [Kribbella flavida DSM 17836]
 gi|283813461|gb|ADB35300.1| NADH-quinone oxidoreductase, B subunit [Kribbella flavida DSM
           17836]
          Length = 184

 Score =  158 bits (400), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 74/144 (51%), Positives = 102/144 (70%), Gaps = 2/144 (1%)

Query: 37  GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95
           G L+T+++ L  + R  SL   TFGLACCA+EMM    PRYD  RFG    RASPRQ+D+
Sbjct: 10  GVLLTTIEGLSGYMRKASLWPATFGLACCAIEMMTTGAPRYDAARFGMEVFRASPRQADL 69

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
           MIVAG ++ KMA  LR++YDQMP P++V++MG CA+ GG ++ +Y++V+G D +VPVD+Y
Sbjct: 70  MIVAGRVSQKMAPVLRQIYDQMPNPKWVLAMGVCASSGGMFN-NYAIVQGVDHVVPVDMY 128

Query: 156 VPGCPPTAEALIYGILLLQKKIRR 179
           +PGCPP  E L+   L L   I+ 
Sbjct: 129 LPGCPPRPEMLLDAFLKLHDDIQH 152


>gi|254421629|ref|ZP_05035347.1| NADH-quinone oxidoreductase, B subunit subfamily, putative
           [Synechococcus sp. PCC 7335]
 gi|196189118|gb|EDX84082.1| NADH-quinone oxidoreductase, B subunit subfamily, putative
           [Synechococcus sp. PCC 7335]
          Length = 242

 Score =  158 bits (400), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 71/143 (49%), Positives = 101/143 (70%), Gaps = 1/143 (0%)

Query: 36  KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDV 95
           +  ++T+VD L  W R  SL  + +G ACC +E       R+D +RFG APRASPRQ+D+
Sbjct: 27  ENVILTTVDDLYNWTRLSSLFPLLYGTACCFIEFAALLGSRFDFDRFGLAPRASPRQADL 86

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPVDI 154
           +IVAGT+T KMA AL R+Y+QMP+P YV++MG+C   GG +   S + +RG D+I+PVD+
Sbjct: 87  IIVAGTVTMKMAPALVRLYEQMPKPAYVMAMGACTITGGMFSADSPTALRGVDKIIPVDV 146

Query: 155 YVPGCPPTAEALIYGILLLQKKI 177
           Y+PGCPP  EA+   ++ L+KKI
Sbjct: 147 YIPGCPPRPEAIFDAVIKLRKKI 169


>gi|50843385|ref|YP_056612.1| NADH dehydrogenase subunit B [Propionibacterium acnes KPA171202]
 gi|289425667|ref|ZP_06427439.1| NADH dehydrogenase subunit B [Propionibacterium acnes SK187]
 gi|289426988|ref|ZP_06428707.1| NADH dehydrogenase subunit B [Propionibacterium acnes J165]
 gi|295131459|ref|YP_003582122.1| NADH-ubiquinone oxidoreductase chain B [Propionibacterium acnes
           SK137]
 gi|81611154|sp|Q6A6F9|NUOB_PROAC RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|50840987|gb|AAT83654.1| NADH dehydrogenase I chain B [Propionibacterium acnes KPA171202]
 gi|289153968|gb|EFD02661.1| NADH dehydrogenase subunit B [Propionibacterium acnes SK187]
 gi|289159810|gb|EFD07995.1| NADH dehydrogenase subunit B [Propionibacterium acnes J165]
 gi|291376052|gb|ADD99906.1| NADH-ubiquinone oxidoreductase chain B [Propionibacterium acnes
           SK137]
 gi|332676328|gb|AEE73144.1| NADH-quinone oxidoreductase subunit B [Propionibacterium acnes 266]
          Length = 185

 Score =  158 bits (399), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 72/144 (50%), Positives = 108/144 (75%), Gaps = 2/144 (1%)

Query: 37  GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95
           G ++TS++ +V W R  S   +T GLACCA+EM+    PR D  R+G    RASPRQ+D+
Sbjct: 11  GIVMTSMEAIVGWLRKTSFWPLTMGLACCAIEMISYGGPRADAARWGHEVFRASPRQADL 70

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
           MIV+G ++ KMA  +R++YDQMPEP++VISMG+CA+ GG ++ +Y+VV+GCD IVPVD+Y
Sbjct: 71  MIVSGRVSQKMAPVVRQLYDQMPEPKWVISMGACASSGGIFN-NYAVVQGCDHIVPVDVY 129

Query: 156 VPGCPPTAEALIYGILLLQKKIRR 179
           +PGCPP+ + LI  +  ++++I+ 
Sbjct: 130 LPGCPPSPDMLIDAVFKIREQIQH 153


>gi|290489714|gb|ADD31241.1| NADH-plastoquinone oxidoreductase subunit K protein [Lonicera
           japonica]
          Length = 247

 Score =  158 bits (399), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 70/149 (46%), Positives = 103/149 (69%), Gaps = 1/149 (0%)

Query: 32  EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPR 91
           + T    + T+++ L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPR
Sbjct: 33  QTTQNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPR 92

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIV 150
           Q+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++
Sbjct: 93  QADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLI 152

Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           PVD+Y+PGCPP  EA+I  I  L+KKI R
Sbjct: 153 PVDVYLPGCPPKPEAVIDAITKLRKKISR 181


>gi|333031513|ref|ZP_08459574.1| NAD(P)H-quinone oxidoreductase subunit K [Bacteroides coprosuis DSM
           18011]
 gi|332742110|gb|EGJ72592.1| NAD(P)H-quinone oxidoreductase subunit K [Bacteroides coprosuis DSM
           18011]
          Length = 214

 Score =  158 bits (399), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 67/132 (50%), Positives = 96/132 (72%), Gaps = 1/132 (0%)

Query: 48  TWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQSDVMIVAGTLTNKM 106
            W R+ SL  +TF  +CC +E M     R+D  RFGF   R SPRQ+D ++VAGT+T+KM
Sbjct: 51  NWGRSNSLWPLTFATSCCGIEFMAIGAARHDFARFGFEVARPSPRQADFIMVAGTITDKM 110

Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL 166
           A  L+R+YDQM +P+YVI+ G+C   GG +  SY VV+G D+I+PVD+++PGCPP  EA+
Sbjct: 111 APVLKRLYDQMADPKYVIACGACTITGGPFKNSYHVVKGIDKILPVDVFIPGCPPRPEAM 170

Query: 167 IYGILLLQKKIR 178
           IYG++ LQ+K++
Sbjct: 171 IYGLMQLQRKVK 182


>gi|282855273|ref|ZP_06264605.1| NADH dehydrogenase subunit B [Propionibacterium acnes J139]
 gi|282581861|gb|EFB87246.1| NADH dehydrogenase subunit B [Propionibacterium acnes J139]
          Length = 185

 Score =  158 bits (399), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 72/144 (50%), Positives = 108/144 (75%), Gaps = 2/144 (1%)

Query: 37  GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95
           G ++TS++ +V W R  S   +T GLACCA+EM+    PR D  R+G    RASPRQ+D+
Sbjct: 11  GIVMTSMEAIVGWLRKTSFWPLTMGLACCAIEMISYGGPRADAARWGHEVFRASPRQADL 70

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
           MIV+G ++ KMA  +R++YDQMPEP++VISMG+CA+ GG ++ +Y+VV+GCD IVPVD+Y
Sbjct: 71  MIVSGRVSQKMAPVVRQLYDQMPEPKWVISMGACASSGGIFN-NYAVVQGCDHIVPVDVY 129

Query: 156 VPGCPPTAEALIYGILLLQKKIRR 179
           +PGCPP+ + LI  +  ++++I+ 
Sbjct: 130 LPGCPPSPDMLIDAVFKIREQIQH 153


>gi|328906302|gb|EGG26077.1| NADH dehydrogenase subunit B [Propionibacterium sp. P08]
          Length = 185

 Score =  158 bits (399), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 72/144 (50%), Positives = 108/144 (75%), Gaps = 2/144 (1%)

Query: 37  GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95
           G ++TS++ +V W R  S   +T GLACCA+EM+    PR D  R+G    RASPRQ+D+
Sbjct: 11  GIVMTSMEAIVGWLRKTSFWPLTMGLACCAIEMISYGGPRADAARWGHEVFRASPRQADL 70

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
           MIV+G ++ KMA  +R++YDQMPEP++VISMG+CA+ GG ++ +Y+VV+GCD IVPVD+Y
Sbjct: 71  MIVSGRVSQKMAPVVRQLYDQMPEPKWVISMGACASSGGIFN-NYAVVQGCDHIVPVDVY 129

Query: 156 VPGCPPTAEALIYGILLLQKKIRR 179
           +PGCPP+ + LI  +  ++++I+ 
Sbjct: 130 LPGCPPSPDMLIDAVFKIREQIQH 153


>gi|318042790|ref|ZP_07974746.1| NADH dehydrogenase subunit B [Synechococcus sp. CB0101]
          Length = 241

 Score =  158 bits (399), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 76/168 (45%), Positives = 114/168 (67%), Gaps = 4/168 (2%)

Query: 11  ISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMM 70
           +  Q S S   V A    ++S+++ +  ++T++D L  WAR  SL  + +G ACC +E  
Sbjct: 10  LRDQRSASCNPVAA--PSVTSDLS-ENVILTTLDDLHNWARLSSLWPLLYGTACCFIEFA 66

Query: 71  QASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCA 130
                R+D +RFG  PR+SPRQ+D++IVAGT+T KMA AL R+Y+QMPEP+YVI+MG+C 
Sbjct: 67  ALIGSRFDFDRFGLVPRSSPRQADLLIVAGTVTMKMAPALVRLYEQMPEPKYVIAMGACT 126

Query: 131 NGGGYYHY-SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
             GG +   S + VRG D+++PVD+Y+PGCPP  EA+   ++ L+KK+
Sbjct: 127 ITGGMFSADSTTAVRGVDKLIPVDLYLPGCPPRPEAIFDAVIKLRKKV 174


>gi|126657571|ref|ZP_01728727.1| NADH dehydrogenase subunit B [Cyanothece sp. CCY0110]
 gi|126621275|gb|EAZ91988.1| NADH dehydrogenase subunit B [Cyanothece sp. CCY0110]
          Length = 247

 Score =  158 bits (399), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 69/143 (48%), Positives = 101/143 (70%), Gaps = 1/143 (0%)

Query: 36  KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDV 95
           +  ++T+VD L  WAR  SL  + +G ACC +E       R+D +RFG  PR+SPRQ+D+
Sbjct: 35  ENIILTTVDDLHNWARLSSLWPLLYGTACCFIEFAALIGSRFDFDRFGLVPRSSPRQADL 94

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCA-NGGGYYHYSYSVVRGCDRIVPVDI 154
           +I AGT+T KMA AL R+Y++MP+P+YVI+MG+C   GG +   S + VRG D+++PVD+
Sbjct: 95  IITAGTITMKMAPALVRLYEEMPDPKYVIAMGACTITGGMFSSDSTTAVRGVDKLIPVDV 154

Query: 155 YVPGCPPTAEALIYGILLLQKKI 177
           Y+PGCPP  EA+   I+ L+KK+
Sbjct: 155 YIPGCPPRPEAIFDAIIKLRKKV 177


>gi|119491043|ref|ZP_01623201.1| NADH dehydrogenase beta subunit [Lyngbya sp. PCC 8106]
 gi|119453588|gb|EAW34748.1| NADH dehydrogenase beta subunit [Lyngbya sp. PCC 8106]
          Length = 241

 Score =  158 bits (399), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 72/151 (47%), Positives = 106/151 (70%), Gaps = 2/151 (1%)

Query: 28  RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
           +++ E++ +  ++T+VD L  WAR  SL  + +G ACC +E       R+D +RFG  PR
Sbjct: 21  QVTQELS-ENVVLTTVDDLYNWARLSSLWPLLYGTACCFIEFAALIGSRFDFDRFGLVPR 79

Query: 88  ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGC 146
           +SPRQ+D++I AGT+T K A  L R+Y+QMPEP+YVI+MG+C   GG +   S + VRG 
Sbjct: 80  SSPRQADLLITAGTITMKYAPVLVRLYEQMPEPKYVIAMGACTITGGMFSMDSTTAVRGV 139

Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
           D+++PVD+Y+PGCPP  EA+I  I+ L+KKI
Sbjct: 140 DKLIPVDVYIPGCPPRPEAIIDAIIKLRKKI 170


>gi|51893915|ref|YP_076606.1| NADH dehydrogenase I subunit B [Symbiobacterium thermophilum IAM
           14863]
 gi|81610392|sp|Q67KN6|NUOB2_SYMTH RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName:
           Full=NADH dehydrogenase I subunit B 2; AltName:
           Full=NDH-1 subunit B 2
 gi|51857604|dbj|BAD41762.1| NADH dehydrogenase I subunit B [Symbiobacterium thermophilum IAM
           14863]
          Length = 182

 Score =  158 bits (399), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 75/151 (49%), Positives = 106/151 (70%), Gaps = 1/151 (0%)

Query: 29  ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APR 87
           + +E    G L   + +++ W    S   + FG+ACCA+EMM A   +YD+ RFG  A R
Sbjct: 22  VVNENVIAGKLPDVIKKVLGWGYGNSTWPLGFGIACCAIEMMAACSSKYDIARFGSEAMR 81

Query: 88  ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCD 147
            SPRQ+DVMIVAGT+  KMA  +RR+YDQM EP++VI+MG+CA+ GG Y  +Y+VV G  
Sbjct: 82  MSPRQADVMIVAGTVNEKMAVVVRRLYDQMSEPKFVIAMGACASNGGPYWDTYNVVDGVH 141

Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           ++VPVD+YVPGCPP  EAL+ G++ +Q+ I+
Sbjct: 142 KVVPVDVYVPGCPPRPEALLQGLMEIQEMIK 172


>gi|254415153|ref|ZP_05028915.1| NADH-quinone oxidoreductase, B subunit subfamily, putative
           [Microcoleus chthonoplastes PCC 7420]
 gi|196177959|gb|EDX72961.1| NADH-quinone oxidoreductase, B subunit subfamily, putative
           [Microcoleus chthonoplastes PCC 7420]
          Length = 247

 Score =  158 bits (399), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 75/168 (44%), Positives = 109/168 (64%), Gaps = 2/168 (1%)

Query: 12  SGQSSCSLEKVDADFSRIS-SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMM 70
           + Q     EK+    SR   ++   +  ++T+VD L  WAR  SL  M +G ACC +E  
Sbjct: 9   ASQQQQPKEKIINPISRPQVTQNLSENVILTTVDDLYNWARLSSLWPMMYGTACCFIEFA 68

Query: 71  QASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCA 130
                R+D +RFG  PR SPRQ+D++I AGT+T KM  AL R+Y+QMPEP+YV++MG+C 
Sbjct: 69  AMIGSRFDFDRFGLVPRCSPRQADLIITAGTITMKMTPALVRLYEQMPEPKYVMAMGACT 128

Query: 131 NGGGYYHY-SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
             GG +   S + VRG D+++PVD+Y+PGCPP  EA++  I+ L+KK+
Sbjct: 129 ITGGMFSVDSPTAVRGVDKLIPVDVYIPGCPPRPEAIMDAIVKLRKKV 176


>gi|167391809|ref|YP_001671687.1| NADH dehydrogenase subunit K [Carica papaya]
 gi|218527885|sp|B1A939|NDHK_CARPA RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
 gi|166344136|gb|ABY86786.1| NADH-plastoquinone oxidoreductase subunit K [Carica papaya]
          Length = 225

 Score =  158 bits (399), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 70/147 (47%), Positives = 102/147 (69%), Gaps = 1/147 (0%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
           T    + T+++ L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPRQ+
Sbjct: 13  TQNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 72

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152
           D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++PV
Sbjct: 73  DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 132

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179
           D+Y+PGCPP  EA+I  I  L+KKI R
Sbjct: 133 DVYLPGCPPKPEAVIDAITKLRKKISR 159


>gi|314923993|gb|EFS87824.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL001PA1]
 gi|314965057|gb|EFT09156.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL082PA2]
 gi|314983077|gb|EFT27169.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL110PA3]
 gi|315090610|gb|EFT62586.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL110PA4]
 gi|315093903|gb|EFT65879.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL060PA1]
 gi|315104122|gb|EFT76098.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL050PA2]
 gi|327325785|gb|EGE67577.1| NADH dehydrogenase I, B subunit [Propionibacterium acnes HL103PA1]
          Length = 188

 Score =  158 bits (399), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 72/144 (50%), Positives = 108/144 (75%), Gaps = 2/144 (1%)

Query: 37  GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95
           G ++TS++ +V W R  S   +T GLACCA+EM+    PR D  R+G    RASPRQ+D+
Sbjct: 14  GIVMTSMEAIVGWLRKTSFWPLTMGLACCAIEMISYGGPRADAARWGHEVFRASPRQADL 73

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
           MIV+G ++ KMA  +R++YDQMPEP++VISMG+CA+ GG ++ +Y+VV+GCD IVPVD+Y
Sbjct: 74  MIVSGRVSQKMAPVVRQLYDQMPEPKWVISMGACASSGGIFN-NYAVVQGCDHIVPVDVY 132

Query: 156 VPGCPPTAEALIYGILLLQKKIRR 179
           +PGCPP+ + LI  +  ++++I+ 
Sbjct: 133 LPGCPPSPDMLIDAVFKIREQIQH 156


>gi|227874585|ref|ZP_03992748.1| NADH dehydrogenase (quinone) [Mobiluncus mulieris ATCC 35243]
 gi|269977615|ref|ZP_06184582.1| NADH-quinone oxidoreductase subunit b [Mobiluncus mulieris 28-1]
 gi|306817869|ref|ZP_07451608.1| NADH-quinone oxidoreductase subunit B [Mobiluncus mulieris ATCC
           35239]
 gi|307701323|ref|ZP_07638344.1| NADH dehydrogenase subunit B [Mobiluncus mulieris FB024-16]
 gi|227844794|gb|EEJ54940.1| NADH dehydrogenase (quinone) [Mobiluncus mulieris ATCC 35243]
 gi|269934218|gb|EEZ90785.1| NADH-quinone oxidoreductase subunit b [Mobiluncus mulieris 28-1]
 gi|304649348|gb|EFM46634.1| NADH-quinone oxidoreductase subunit B [Mobiluncus mulieris ATCC
           35239]
 gi|307613484|gb|EFN92732.1| NADH dehydrogenase subunit B [Mobiluncus mulieris FB024-16]
          Length = 184

 Score =  158 bits (399), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 74/149 (49%), Positives = 112/149 (75%), Gaps = 4/149 (2%)

Query: 32  EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASP 90
           EI+ KG     +D +V +AR+ S+  +T GLACCA+EMM  + PR+D+ RFG    RASP
Sbjct: 7   EISEKGG--KPLDTVVDFARSLSIWPVTMGLACCAIEMMATAAPRFDIARFGSEVFRASP 64

Query: 91  RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150
           R +DVM+V+G +++KMA+ +R VYD+M +P++VISMG+CA+ GG ++ +Y++V+GCD +V
Sbjct: 65  RHADVMLVSGRVSHKMATIMRNVYDEMADPKWVISMGACASSGGIFN-NYAIVQGCDHVV 123

Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           PVDIY+PGCPP  E L+  +L L+  I++
Sbjct: 124 PVDIYLPGCPPRPEMLLGALLALRDHIKK 152


>gi|73921507|sp|O98679|NDHK_PEA RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
 gi|4138389|emb|CAA06191.1| NADH-plastoquinone oxidoreductase subunit, NdhK [Pisum sativum]
          Length = 227

 Score =  158 bits (399), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 70/147 (47%), Positives = 102/147 (69%), Gaps = 1/147 (0%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
           T    + T+++ L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPRQ+
Sbjct: 13  TKNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 72

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152
           D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++PV
Sbjct: 73  DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 132

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179
           D+Y+PGCPP  EA+I  I  L+KKI R
Sbjct: 133 DVYLPGCPPKPEAVIDAITKLRKKISR 159


>gi|313836201|gb|EFS73915.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL037PA2]
 gi|314971365|gb|EFT15463.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL037PA3]
          Length = 188

 Score =  158 bits (399), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 72/144 (50%), Positives = 108/144 (75%), Gaps = 2/144 (1%)

Query: 37  GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95
           G ++TS++ +V W R  S   +T GLACCA+EM+    PR D  R+G    RASPRQ+D+
Sbjct: 14  GIVMTSMEAIVGWLRKTSFWPLTMGLACCAIEMISYGGPRADAARWGHEVFRASPRQADL 73

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
           MIV+G ++ KMA  +R++YDQMPEP++VISMG+CA+ GG ++ +Y+VV+GCD IVPVD+Y
Sbjct: 74  MIVSGRVSQKMAPVVRQLYDQMPEPKWVISMGACASSGGIFN-NYAVVQGCDHIVPVDVY 132

Query: 156 VPGCPPTAEALIYGILLLQKKIRR 179
           +PGCPP+ + LI  +  ++++I+ 
Sbjct: 133 LPGCPPSPDMLIDAVFKIREQIQH 156


>gi|313763285|gb|EFS34649.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL013PA1]
 gi|313773331|gb|EFS39297.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL074PA1]
 gi|313793607|gb|EFS41647.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL110PA1]
 gi|313802882|gb|EFS44095.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL110PA2]
 gi|313806328|gb|EFS44844.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL087PA2]
 gi|313810766|gb|EFS48480.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL083PA1]
 gi|313813675|gb|EFS51389.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL025PA1]
 gi|313814975|gb|EFS52689.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL059PA1]
 gi|313819439|gb|EFS57153.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL046PA2]
 gi|313821245|gb|EFS58959.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL036PA1]
 gi|313822300|gb|EFS60014.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL036PA2]
 gi|313826142|gb|EFS63856.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL063PA1]
 gi|313829369|gb|EFS67083.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL063PA2]
 gi|313831077|gb|EFS68791.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL007PA1]
 gi|313833207|gb|EFS70921.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL056PA1]
 gi|313838150|gb|EFS75864.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL086PA1]
 gi|314916739|gb|EFS80570.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL005PA4]
 gi|314919135|gb|EFS82966.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL050PA1]
 gi|314921215|gb|EFS85046.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL050PA3]
 gi|314925991|gb|EFS89822.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL036PA3]
 gi|314930357|gb|EFS94188.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL067PA1]
 gi|314956140|gb|EFT00536.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL027PA1]
 gi|314959673|gb|EFT03775.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL002PA1]
 gi|314962247|gb|EFT06348.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL002PA2]
 gi|314963239|gb|EFT07339.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL082PA1]
 gi|314969782|gb|EFT13880.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL037PA1]
 gi|314973939|gb|EFT18035.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL053PA1]
 gi|314976867|gb|EFT20962.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL045PA1]
 gi|314979332|gb|EFT23426.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL072PA2]
 gi|314984989|gb|EFT29081.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL005PA1]
 gi|314986337|gb|EFT30429.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL005PA2]
 gi|314988567|gb|EFT32658.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL005PA3]
 gi|315079684|gb|EFT51672.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL053PA2]
 gi|315081012|gb|EFT52988.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL078PA1]
 gi|315083925|gb|EFT55901.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL027PA2]
 gi|315085062|gb|EFT57038.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL002PA3]
 gi|315089491|gb|EFT61467.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL072PA1]
 gi|315097690|gb|EFT69666.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL038PA1]
 gi|315098103|gb|EFT70079.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL059PA2]
 gi|315102679|gb|EFT74655.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL046PA1]
 gi|315107941|gb|EFT79917.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL030PA1]
 gi|315108821|gb|EFT80797.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL030PA2]
 gi|327325710|gb|EGE67507.1| NADH dehydrogenase I, B subunit [Propionibacterium acnes HL096PA3]
 gi|327330842|gb|EGE72587.1| NADH dehydrogenase I, B subunit [Propionibacterium acnes HL096PA2]
 gi|327442865|gb|EGE89519.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL043PA2]
 gi|327445257|gb|EGE91911.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL043PA1]
 gi|327447757|gb|EGE94411.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL013PA2]
 gi|327451632|gb|EGE98286.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL087PA3]
 gi|327452285|gb|EGE98939.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL083PA2]
 gi|327452502|gb|EGE99156.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL092PA1]
 gi|328752118|gb|EGF65734.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL025PA2]
 gi|328755062|gb|EGF68678.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL020PA1]
 gi|328757010|gb|EGF70626.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL087PA1]
 gi|328761546|gb|EGF75064.1| NADH dehydrogenase I, B subunit [Propionibacterium acnes HL099PA1]
          Length = 188

 Score =  158 bits (399), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 72/144 (50%), Positives = 108/144 (75%), Gaps = 2/144 (1%)

Query: 37  GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95
           G ++TS++ +V W R  S   +T GLACCA+EM+    PR D  R+G    RASPRQ+D+
Sbjct: 14  GIVMTSMEAIVGWLRKTSFWPLTMGLACCAIEMISYGGPRADAARWGHEVFRASPRQADL 73

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
           MIV+G ++ KMA  +R++YDQMPEP++VISMG+CA+ GG ++ +Y+VV+GCD IVPVD+Y
Sbjct: 74  MIVSGRVSQKMAPVVRQLYDQMPEPKWVISMGACASSGGIFN-NYAVVQGCDHIVPVDVY 132

Query: 156 VPGCPPTAEALIYGILLLQKKIRR 179
           +PGCPP+ + LI  +  ++++I+ 
Sbjct: 133 LPGCPPSPDMLIDAVFKIREQIQH 156


>gi|172036678|ref|YP_001803179.1| NADH dehydrogenase subunit B [Cyanothece sp. ATCC 51142]
 gi|218527887|sp|B1WZG1|NDHK_CYAA5 RecName: Full=NAD(P)H-quinone oxidoreductase subunit K; AltName:
           Full=NAD(P)H dehydrogenase I subunit K; AltName:
           Full=NDH-1 subunit K; Short=NDH-K
 gi|171698132|gb|ACB51113.1| NADH dehydrogenase subunit K [Cyanothece sp. ATCC 51142]
          Length = 247

 Score =  158 bits (399), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 69/143 (48%), Positives = 101/143 (70%), Gaps = 1/143 (0%)

Query: 36  KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDV 95
           +  ++T+VD L  WAR  SL  + +G ACC +E       R+D +RFG  PR+SPRQ+D+
Sbjct: 35  ENIILTTVDDLHNWARLSSLWPLLYGTACCFIEFAALIGSRFDFDRFGLVPRSSPRQADL 94

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCA-NGGGYYHYSYSVVRGCDRIVPVDI 154
           +I AGT+T KMA AL R+Y++MP+P+YVI+MG+C   GG +   S + VRG D+++PVD+
Sbjct: 95  IITAGTITMKMAPALVRLYEEMPDPKYVIAMGACTITGGMFSSDSTTAVRGVDKLIPVDV 154

Query: 155 YVPGCPPTAEALIYGILLLQKKI 177
           Y+PGCPP  EA+   I+ L+KK+
Sbjct: 155 YIPGCPPRPEAIFDAIIKLRKKV 177


>gi|332702769|ref|ZP_08422857.1| NAD(P)H-quinone oxidoreductase subunit K [Desulfovibrio africanus
           str. Walvis Bay]
 gi|332552918|gb|EGJ49962.1| NAD(P)H-quinone oxidoreductase subunit K [Desulfovibrio africanus
           str. Walvis Bay]
          Length = 179

 Score =  158 bits (399), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 75/136 (55%), Positives = 100/136 (73%), Gaps = 3/136 (2%)

Query: 45  QLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLT 103
           Q +   R  SL  MTFGLACCA+EMM  +MPR+D  RFG    R SPRQSD+M+VAGT++
Sbjct: 26  QFLDVCRAMSLWPMTFGLACCAIEMMAMTMPRFDASRFGAEVFRPSPRQSDLMLVAGTVS 85

Query: 104 NKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY--SYSVVRGCDRIVPVDIYVPGCPP 161
           NKMA A+ R+Y+QMP P+YVI++G+CA  GG + +   Y +V G D+++PVD+YVPGCPP
Sbjct: 86  NKMAQAVVRLYEQMPAPKYVIAIGNCAISGGPFLFKGQYGIVEGIDKLIPVDVYVPGCPP 145

Query: 162 TAEALIYGILLLQKKI 177
             EA + G+  LQ+KI
Sbjct: 146 RPEAFLEGLFKLQEKI 161


>gi|289065093|ref|YP_003433979.1| NADH-plastoquinone oxidoreductase subunit K [Typha latifolia]
 gi|281371776|gb|ADA63703.1| NADH-plastoquinone oxidoreductase subunit K [Typha latifolia]
          Length = 255

 Score =  158 bits (399), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 71/149 (47%), Positives = 102/149 (68%), Gaps = 1/149 (0%)

Query: 32  EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPR 91
           E T    + T+ + L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPR
Sbjct: 33  ETTPNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPR 92

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIV 150
           Q+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++
Sbjct: 93  QADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLI 152

Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           PVD+Y+PGCPP  EA+I  I  L+KKI R
Sbjct: 153 PVDVYLPGCPPKPEAVIDAITKLRKKISR 181


>gi|256396791|ref|YP_003118355.1| NADH-quinone oxidoreductase subunit beta [Catenulispora acidiphila
           DSM 44928]
 gi|256363017|gb|ACU76514.1| NADH-quinone oxidoreductase, B subunit [Catenulispora acidiphila
           DSM 44928]
          Length = 184

 Score =  158 bits (399), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 78/149 (52%), Positives = 105/149 (70%), Gaps = 2/149 (1%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RAS 89
            E    GFL+T+V+ L  + R  S+   TFGLACCA+EMM     RYDL RFG     A+
Sbjct: 4   EEKLPAGFLLTTVEGLAGYMRKSSVWPATFGLACCAIEMMATGAGRYDLARFGMERFSAT 63

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQ+D+MIVAG ++ KMA  LR+VYDQM  P++VI+MG CA+ GG ++ +Y++V+G D I
Sbjct: 64  PRQADLMIVAGRVSQKMAPVLRQVYDQMANPKWVIAMGVCASSGGMFN-NYAIVQGVDHI 122

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           VPVDIY+PGCPP  E L+  IL L ++I+
Sbjct: 123 VPVDIYLPGCPPRPEMLLDAILKLHEQIQ 151


>gi|295136982|ref|YP_003587528.1| NADH dehydrogenase subunit K [Pisum sativum]
 gi|293338554|gb|ADE43527.1| NADH dehydrogenase subunit K [Pisum sativum]
          Length = 227

 Score =  158 bits (399), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 70/147 (47%), Positives = 102/147 (69%), Gaps = 1/147 (0%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
           T    + T+++ L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPRQ+
Sbjct: 13  TKNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 72

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152
           D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++PV
Sbjct: 73  DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 132

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179
           D+Y+PGCPP  EA+I  I  L+KKI R
Sbjct: 133 DVYLPGCPPKPEAVIDAITKLRKKISR 159


>gi|197359657|gb|ACH69871.1| NADH-plastoquinone oxidoreductase subunit K [Aneura sp. Wickett
           473]
          Length = 231

 Score =  158 bits (399), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 72/158 (45%), Positives = 106/158 (67%), Gaps = 2/158 (1%)

Query: 23  DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82
           D  F      +T    ++T+++    WAR  SL  + +G +CC +E       R+D +R+
Sbjct: 3   DTKFHPFDKTVTD-SIILTTLNDFSNWARLSSLWPLLYGTSCCFIEFASLIGSRFDFDRY 61

Query: 83  GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYS 141
           G  PR+SPRQ+D++I AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SY+
Sbjct: 62  GLVPRSSPRQADLVITAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYT 121

Query: 142 VVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
            VRG D+++PVDIY+PGCPP  EA+I  ++ L+KKI R
Sbjct: 122 TVRGVDKLIPVDIYLPGCPPRPEAIIDAVIKLRKKIAR 159


>gi|154795237|ref|YP_740654.2| NADH-plastoquinone oxidoreductase subunit K [Nandina domestica]
 gi|218527960|sp|Q09FV7|NDHK_NANDO RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
          Length = 225

 Score =  158 bits (399), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 70/148 (47%), Positives = 102/148 (68%), Gaps = 1/148 (0%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           IT    + T+ + L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPRQ
Sbjct: 12  ITQNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQ 71

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVP 151
           +D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++P
Sbjct: 72  ADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIP 131

Query: 152 VDIYVPGCPPTAEALIYGILLLQKKIRR 179
           VD+Y+PGCPP  EA+I  I  L+KK+ R
Sbjct: 132 VDVYLPGCPPKPEAVIDAITKLRKKVSR 159


>gi|124025086|ref|YP_001014202.1| NADH dehydrogenase subunit B [Prochlorococcus marinus str. NATL1A]
 gi|218527917|sp|A2C0C7|NDHK_PROM1 RecName: Full=NAD(P)H-quinone oxidoreductase subunit K; AltName:
           Full=NAD(P)H dehydrogenase I subunit K; AltName:
           Full=NDH-1 subunit K; Short=NDH-K
 gi|123960154|gb|ABM74937.1| putative respiratory-chain NADH dehydrogenase subunit
           [Prochlorococcus marinus str. NATL1A]
          Length = 249

 Score =  158 bits (399), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 69/143 (48%), Positives = 102/143 (71%), Gaps = 1/143 (0%)

Query: 36  KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDV 95
           +  ++TS++ L  WAR  SL  + +G ACC +E       R+D +RFG  PR+SPRQ+D+
Sbjct: 37  ENIILTSLEDLHNWARLSSLWPLLYGTACCFIEFAALIGSRFDFDRFGLVPRSSPRQADL 96

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPVDI 154
           +IVAGT+T KMA AL R+Y+QMP+P+YVI+MG+C   GG +   S + VRG D+++PVD+
Sbjct: 97  LIVAGTVTMKMAPALVRLYEQMPDPKYVIAMGACTITGGMFSADSTTAVRGVDKLIPVDL 156

Query: 155 YVPGCPPTAEALIYGILLLQKKI 177
           Y+PGCPP  EA+   ++ L+KK+
Sbjct: 157 YLPGCPPRPEAIFDAVIKLRKKV 179


>gi|7636113|emb|CAB88733.1| NADH dehydrogenase 32kDa subunit [Spinacia oleracea]
          Length = 281

 Score =  158 bits (399), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 71/149 (47%), Positives = 102/149 (68%), Gaps = 1/149 (0%)

Query: 32  EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPR 91
           +I     + T+ + L  W+R  SL  + +G +CC +E       R+D +R+G  PRASPR
Sbjct: 65  QIAQNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRASPR 124

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIV 150
           Q+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++
Sbjct: 125 QADLILTAGTVTMKMAPSLLRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLI 184

Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           PVD+Y+PGCPP  EA+I  I  L+KKI R
Sbjct: 185 PVDVYLPGCPPKPEAVIDAITKLRKKISR 213


>gi|72383495|ref|YP_292850.1| NADH dehydrogenase subunit B [Prochlorococcus marinus str. NATL2A]
 gi|123621504|sp|Q46M05|NDHK_PROMT RecName: Full=NAD(P)H-quinone oxidoreductase subunit K; AltName:
           Full=NAD(P)H dehydrogenase I subunit K; AltName:
           Full=NDH-1 subunit K; Short=NDH-K
 gi|72003345|gb|AAZ59147.1| NADH dehydrogenase subunit B [Prochlorococcus marinus str. NATL2A]
          Length = 249

 Score =  158 bits (399), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 69/143 (48%), Positives = 102/143 (71%), Gaps = 1/143 (0%)

Query: 36  KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDV 95
           +  ++TS++ L  WAR  SL  + +G ACC +E       R+D +RFG  PR+SPRQ+D+
Sbjct: 37  ENIILTSLEDLHNWARLSSLWPLLYGTACCFIEFAALIGSRFDFDRFGLVPRSSPRQADL 96

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPVDI 154
           +IVAGT+T KMA AL R+Y+QMP+P+YVI+MG+C   GG +   S + VRG D+++PVD+
Sbjct: 97  LIVAGTVTMKMAPALVRLYEQMPDPKYVIAMGACTITGGMFSADSTTAVRGVDKLIPVDL 156

Query: 155 YVPGCPPTAEALIYGILLLQKKI 177
           Y+PGCPP  EA+   ++ L+KK+
Sbjct: 157 YLPGCPPRPEAIFDAVIKLRKKV 179


>gi|81176254|ref|YP_398333.1| NADH dehydrogenase subunit K [Lactuca sativa]
 gi|122212029|sp|Q332X4|NDHK_LACSA RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
 gi|78675172|dbj|BAE47598.1| NAD(P)H-quinone oxidoreductase chain K [Lactuca sativa]
 gi|88656987|gb|ABD47237.1| NADH-plastoquinone oxidoreductase subunit K [Lactuca sativa]
          Length = 225

 Score =  158 bits (399), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 70/147 (47%), Positives = 102/147 (69%), Gaps = 1/147 (0%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
           T    + T+++ L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPRQ+
Sbjct: 13  TQNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 72

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152
           D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++PV
Sbjct: 73  DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 132

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179
           D+Y+PGCPP  EA+I  I  L+KKI R
Sbjct: 133 DVYLPGCPPKPEAIIDAITKLRKKISR 159


>gi|91214129|ref|YP_538751.1| NADH dehydrogenase subunit K [Glycine max]
 gi|88984614|sp|P31175|NDHK_SOYBN RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
 gi|83595730|gb|ABC25111.1| NADH-plastoquinone oxidoreductase subunit K [Glycine max]
          Length = 212

 Score =  158 bits (399), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 70/149 (46%), Positives = 103/149 (69%), Gaps = 1/149 (0%)

Query: 32  EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPR 91
           + T    + T+++ L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPR
Sbjct: 11  QTTKNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPR 70

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIV 150
           Q+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++
Sbjct: 71  QADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLI 130

Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           PVD+Y+PGCPP  EA+I  I  L+KKI R
Sbjct: 131 PVDVYLPGCPPKPEAIIDAITKLRKKISR 159


>gi|14423817|sp|Q9MUR0|NDHK_MESVI RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
 gi|7259539|gb|AAF43840.1|AF166114_52 subunit K of NADH-ubiquinone oxidoreductase [Mesostigma viride]
          Length = 247

 Score =  157 bits (398), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 69/141 (48%), Positives = 101/141 (71%), Gaps = 1/141 (0%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
            ++T+++ L  WAR  SL  + +G +CC +E       R+D +RFG  PR SPRQ+D++I
Sbjct: 38  LILTTLNDLYNWARLSSLWPLLYGTSCCFIEFACLLGSRFDFDRFGLVPRCSPRQADLII 97

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPVDIYV 156
            AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++PVD+Y+
Sbjct: 98  TAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYL 157

Query: 157 PGCPPTAEALIYGILLLQKKI 177
           PGCPP  EA+I  ++ L+KK+
Sbjct: 158 PGCPPKPEAIIDAVIKLRKKV 178


>gi|314927636|gb|EFS91467.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL044PA1]
          Length = 188

 Score =  157 bits (398), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 72/144 (50%), Positives = 108/144 (75%), Gaps = 2/144 (1%)

Query: 37  GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95
           G ++TS++ +V W R  S   +T GLACCA+EM+    PR D  R+G    RASPRQ+D+
Sbjct: 14  GIVMTSMEAIVGWLRKTSFWPLTMGLACCAIEMISYGGPRADAARWGHEVFRASPRQADL 73

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
           MIV+G ++ KMA  +R++YDQMPEP++VISMG+CA+ GG ++ +Y+VV+GCD IVPVD+Y
Sbjct: 74  MIVSGRVSQKMAPVVRQLYDQMPEPKWVISMGACASSGGIFN-NYAVVQGCDHIVPVDVY 132

Query: 156 VPGCPPTAEALIYGILLLQKKIRR 179
           +PGCPP+ + LI  +  ++++I+ 
Sbjct: 133 LPGCPPSPDMLIDAVFKIREQIQH 156


>gi|327333123|gb|EGE74850.1| NADH dehydrogenase I, B subunit [Propionibacterium acnes HL097PA1]
          Length = 188

 Score =  157 bits (398), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 72/144 (50%), Positives = 108/144 (75%), Gaps = 2/144 (1%)

Query: 37  GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95
           G ++TS++ +V W R  S   +T GLACCA+EM+    PR D  R+G    RASPRQ+D+
Sbjct: 14  GIVMTSMEAIVGWLRKTSFWPLTMGLACCAIEMISYGGPRADAARWGHEVFRASPRQADL 73

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
           MIV+G ++ KMA  +R++YDQMPEP++VISMG+CA+ GG ++ +Y+VV+GCD IVPVD+Y
Sbjct: 74  MIVSGRVSQKMAPVVRQLYDQMPEPKWVISMGACASSGGIFN-NYAVVQGCDHIVPVDVY 132

Query: 156 VPGCPPTAEALIYGILLLQKKIRR 179
           +PGCPP+ + LI  +  ++++I+ 
Sbjct: 133 LPGCPPSPDMLIDAVFKIREQIQH 156


>gi|300869242|ref|ZP_07113836.1| NAD(P)H-quinone oxidoreductase subunit K [Oscillatoria sp. PCC
           6506]
 gi|300332787|emb|CBN59034.1| NAD(P)H-quinone oxidoreductase subunit K [Oscillatoria sp. PCC
           6506]
          Length = 240

 Score =  157 bits (398), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 73/151 (48%), Positives = 106/151 (70%), Gaps = 2/151 (1%)

Query: 28  RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
            I+S+++ +  ++T+VD L  WAR  SL  + +G ACC +E       R+D +RFG  PR
Sbjct: 20  EITSQLS-ENVILTTVDDLYNWARLSSLWPLLYGTACCFIEFAALIGSRFDFDRFGLVPR 78

Query: 88  ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGC 146
           +SPRQ+D++I AGT+T K A  L R+Y+QMPEP+YVI+MG+C   GG +   S + VRG 
Sbjct: 79  SSPRQADLIITAGTITMKYAPILVRLYEQMPEPKYVIAMGACTITGGMFSMDSPTAVRGV 138

Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
           D+++PVD+Y+PGCPP  EA+I  I+ L+KKI
Sbjct: 139 DKLIPVDVYIPGCPPRPEAIIDAIIKLRKKI 169


>gi|218527950|sp|Q0IDJ3|NDHK_SYNS3 RecName: Full=NAD(P)H-quinone oxidoreductase subunit K; AltName:
           Full=NAD(P)H dehydrogenase I subunit K; AltName:
           Full=NDH-1 subunit K; Short=NDH-K
          Length = 253

 Score =  157 bits (398), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 74/165 (44%), Positives = 109/165 (66%), Gaps = 1/165 (0%)

Query: 14  QSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQAS 73
           ++SC      A+ S   +    +  ++TS+D L  WAR  SL  + +G ACC +E     
Sbjct: 18  EASCGPVGGAAEGSPTVTNDLSENVILTSLDDLHNWARLSSLWPLLYGTACCFIEFAALL 77

Query: 74  MPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGG 133
             R+D +RFG  PR+SPRQ+D++IVAGT+T KM  AL R+Y+QMPEP+YVI+MG+C   G
Sbjct: 78  GSRFDFDRFGLVPRSSPRQADLLIVAGTVTMKMGPALVRLYEQMPEPKYVIAMGACTITG 137

Query: 134 GYYHY-SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
           G +   S + VRG D+++PVD+Y+PGCPP  EA+   ++ L+KK+
Sbjct: 138 GMFSADSTTAVRGVDKLIPVDLYLPGCPPRPEAIFDAVIKLRKKV 182


>gi|113954408|ref|YP_729479.1| NADH dehydrogenase subunit B [Synechococcus sp. CC9311]
 gi|113881759|gb|ABI46717.1| NADH dehydrogenase I chain B or NdhK [Synechococcus sp. CC9311]
          Length = 259

 Score =  157 bits (398), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 74/165 (44%), Positives = 109/165 (66%), Gaps = 1/165 (0%)

Query: 14  QSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQAS 73
           ++SC      A+ S   +    +  ++TS+D L  WAR  SL  + +G ACC +E     
Sbjct: 24  EASCGPVGGAAEGSPTVTNDLSENVILTSLDDLHNWARLSSLWPLLYGTACCFIEFAALL 83

Query: 74  MPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGG 133
             R+D +RFG  PR+SPRQ+D++IVAGT+T KM  AL R+Y+QMPEP+YVI+MG+C   G
Sbjct: 84  GSRFDFDRFGLVPRSSPRQADLLIVAGTVTMKMGPALVRLYEQMPEPKYVIAMGACTITG 143

Query: 134 GYYHY-SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
           G +   S + VRG D+++PVD+Y+PGCPP  EA+   ++ L+KK+
Sbjct: 144 GMFSADSTTAVRGVDKLIPVDLYLPGCPPRPEAIFDAVIKLRKKV 188


>gi|281190728|ref|YP_003330965.1| NADH dehydrogenase subunit K [Parthenium argentatum]
 gi|269924841|gb|ACZ52714.1| NADH dehydrogenase subunit K [Parthenium argentatum]
          Length = 225

 Score =  157 bits (398), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 70/147 (47%), Positives = 102/147 (69%), Gaps = 1/147 (0%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
           T    + T+++ L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPRQ+
Sbjct: 13  TQNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 72

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152
           D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++PV
Sbjct: 73  DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 132

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179
           D+Y+PGCPP  EA+I  I  L+KKI R
Sbjct: 133 DVYLPGCPPKPEAIIDAITKLRKKISR 159


>gi|193237704|dbj|BAG50114.1| NADH dehydrogenase 27 kD subunit [Takakia lepidozioides]
          Length = 259

 Score =  157 bits (398), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 69/143 (48%), Positives = 100/143 (69%), Gaps = 1/143 (0%)

Query: 36  KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDV 95
              ++T+ +    WAR  SL  + +G +CC +E       R+D +R+G  PR+SPRQ+D+
Sbjct: 36  NSIILTTFNDFSNWARLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADL 95

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPVDI 154
           +I AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++PVDI
Sbjct: 96  VITAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDI 155

Query: 155 YVPGCPPTAEALIYGILLLQKKI 177
           Y+PGCPP  EA+I  I+ L+KK+
Sbjct: 156 YLPGCPPKPEAIIDAIIKLRKKV 178


>gi|193237723|dbj|BAG50130.1| NADH dehydrogenase 27 kD subunit [Takakia lepidozioides]
          Length = 257

 Score =  157 bits (398), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 69/143 (48%), Positives = 100/143 (69%), Gaps = 1/143 (0%)

Query: 36  KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDV 95
              ++T+ +    WAR  SL  + +G +CC +E       R+D +R+G  PR+SPRQ+D+
Sbjct: 36  NSIILTTFNDFSNWARLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADL 95

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPVDI 154
           +I AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++PVDI
Sbjct: 96  VITAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDI 155

Query: 155 YVPGCPPTAEALIYGILLLQKKI 177
           Y+PGCPP  EA+I  I+ L+KK+
Sbjct: 156 YLPGCPPKPEAIIDAIIKLRKKV 178


>gi|183217745|ref|YP_001837364.1| NADH dehydrogenase subunit K [Guizotia abyssinica]
 gi|218527890|sp|B2LMJ7|NDHK_GUIAB RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
 gi|179366260|gb|ACB86531.1| NADH dehydrogenase subunit K [Guizotia abyssinica]
          Length = 225

 Score =  157 bits (398), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 70/147 (47%), Positives = 102/147 (69%), Gaps = 1/147 (0%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
           T    + T+++ L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPRQ+
Sbjct: 13  TQNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 72

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152
           D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++PV
Sbjct: 73  DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 132

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179
           D+Y+PGCPP  EA+I  I  L+KKI R
Sbjct: 133 DVYLPGCPPKPEAIIDAITKLRKKISR 159


>gi|301059635|ref|ZP_07200544.1| NADH dehydrogenase subunit B [delta proteobacterium NaphS2]
 gi|300446281|gb|EFK10137.1| NADH dehydrogenase subunit B [delta proteobacterium NaphS2]
          Length = 176

 Score =  157 bits (398), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 77/137 (56%), Positives = 101/137 (73%), Gaps = 3/137 (2%)

Query: 44  DQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTL 102
           ++L    R  SL  MTFGLACCA+EMM   M R+DL RFG    R SPRQSD+MIVAGT+
Sbjct: 25  EKLQNVCRAMSLWPMTFGLACCAIEMMSVGMARFDLARFGAEVFRPSPRQSDLMIVAGTV 84

Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY--SYSVVRGCDRIVPVDIYVPGCP 160
           T+K+A A+ R+Y+QMP P++VI+MG+CA  GG + +   Y+V+ G D+I+PVD+YVPGCP
Sbjct: 85  THKLAPAIERLYEQMPAPKWVIAMGNCAISGGPFKFPGQYAVLEGVDKIIPVDVYVPGCP 144

Query: 161 PTAEALIYGILLLQKKI 177
              EAL+ G+  LQKKI
Sbjct: 145 ARPEALLEGLFELQKKI 161


>gi|126165911|ref|YP_358680.2| NADH dehydrogenase subunit K [Nicotiana sylvestris]
 gi|126165916|ref|NP_054503.2| NADH dehydrogenase subunit K [Nicotiana tabacum]
          Length = 247

 Score =  157 bits (398), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 70/147 (47%), Positives = 102/147 (69%), Gaps = 1/147 (0%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
           T    + T+++ L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPRQ+
Sbjct: 35  TQNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 94

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152
           D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++PV
Sbjct: 95  DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 154

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179
           D+Y+PGCPP  EA+I  I  L+KKI R
Sbjct: 155 DVYLPGCPPKPEAVIDAITKLRKKISR 181


>gi|313199706|ref|YP_004021320.1| NADH-plastoquinone oxidoreductase subunit K [Theobroma cacao]
 gi|309321270|gb|ADO64813.1| NADH-plastoquinone oxidoreductase subunit K [Theobroma cacao]
 gi|328924787|gb|ADO64894.2| NADH-plastoquinone oxidoreductase subunit K [Theobroma cacao]
          Length = 225

 Score =  157 bits (398), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 70/147 (47%), Positives = 102/147 (69%), Gaps = 1/147 (0%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
           T    + T+++ L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPRQ+
Sbjct: 13  TQNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 72

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152
           D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++PV
Sbjct: 73  DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 132

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179
           D+Y+PGCPP  EA+I  I  L+KKI R
Sbjct: 133 DVYLPGCPPKPEAVIDAITKLRKKISR 159


>gi|94502495|ref|YP_588121.1| NADH dehydrogenase subunit K [Helianthus annuus]
 gi|122179574|sp|Q1KXV5|NDHK_HELAN RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
 gi|88656899|gb|ABD47150.1| NADH-plastoquinone oxidoreductase subunit K [Helianthus annuus]
          Length = 225

 Score =  157 bits (398), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 70/147 (47%), Positives = 102/147 (69%), Gaps = 1/147 (0%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
           T    + T+++ L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPRQ+
Sbjct: 13  TQNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 72

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152
           D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++PV
Sbjct: 73  DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 132

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179
           D+Y+PGCPP  EA+I  I  L+KKI R
Sbjct: 133 DVYLPGCPPKPEAIIDAITKLRKKISR 159


>gi|218511714|sp|P06409|NDHK_TOBAC RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
 gi|218527957|sp|Q3C1J8|NDHK_NICSY RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
          Length = 225

 Score =  157 bits (398), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 70/147 (47%), Positives = 102/147 (69%), Gaps = 1/147 (0%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
           T    + T+++ L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPRQ+
Sbjct: 13  TQNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 72

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152
           D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++PV
Sbjct: 73  DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 132

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179
           D+Y+PGCPP  EA+I  I  L+KKI R
Sbjct: 133 DVYLPGCPPKPEAVIDAITKLRKKISR 159


>gi|297616443|ref|YP_003701602.1| NADH-quinone oxidoreductase subunit beta [Syntrophothermus
           lipocalidus DSM 12680]
 gi|297144280|gb|ADI01037.1| NADH-quinone oxidoreductase, B subunit [Syntrophothermus
           lipocalidus DSM 12680]
          Length = 160

 Score =  157 bits (398), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 70/146 (47%), Positives = 103/146 (70%), Gaps = 1/146 (0%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQ 92
           T    +VT+++++  W R+ S   +T+G  CC +EMM A   R+D+ R+G+   RASPRQ
Sbjct: 5   TGPNIIVTTLEKIWNWGRSRSFWPLTYGCNCCPIEMMAAGAARFDIARYGYEVFRASPRQ 64

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           +D++IVAG +T KM   + RV+ QMPEP++V++MG+CA  GG +   YSV+ GCD  +PV
Sbjct: 65  ADLLIVAGPVTLKMKPVVERVWAQMPEPKWVLAMGNCATSGGPFKDGYSVLPGCDSFLPV 124

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIR 178
           D+YVPGCPP  EAL +G+L L+KK+ 
Sbjct: 125 DVYVPGCPPRPEALFHGLLELKKKVE 150


>gi|154795219|ref|YP_740121.2| NADH-plastoquinone oxidoreductase subunit K [Daucus carota]
 gi|218527898|sp|Q0G9V8|NDHK_DAUCA RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
          Length = 225

 Score =  157 bits (397), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 70/147 (47%), Positives = 101/147 (68%), Gaps = 1/147 (0%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
           T    + T+ + L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPRQ+
Sbjct: 13  TQNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 72

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152
           D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++PV
Sbjct: 73  DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTISGGMFSTDSYSTVRGVDKLIPV 132

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179
           D+Y+PGCPP  EA+I  I  L+KKI R
Sbjct: 133 DVYLPGCPPKPEAVIDAITKLRKKISR 159


>gi|139390352|ref|YP_001122950.1| photosystem II G protein [Aethionema cordifolium]
 gi|218527879|sp|A4QJB9|NDHK_AETCO RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
 gi|134286145|dbj|BAF49774.1| photosystem II G protein [Aethionema cordifolium]
          Length = 229

 Score =  157 bits (397), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 70/147 (47%), Positives = 102/147 (69%), Gaps = 1/147 (0%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
           T    + T+++ L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPRQ+
Sbjct: 13  TKNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 72

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152
           D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++PV
Sbjct: 73  DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 132

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179
           D+Y+PGCPP  EA+I  I  L+KKI R
Sbjct: 133 DVYLPGCPPKPEAVIDAITKLRKKIAR 159


>gi|218527895|sp|Q49KZ4|NDHK_EUCGG RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
          Length = 225

 Score =  157 bits (397), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 70/147 (47%), Positives = 102/147 (69%), Gaps = 1/147 (0%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
           T    + T+++ L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPRQ+
Sbjct: 13  TQNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 72

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152
           D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++PV
Sbjct: 73  DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 132

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179
           D+Y+PGCPP  EA+I  I  L+KKI R
Sbjct: 133 DVYLPGCPPKPEAVIDAITKLRKKIAR 159


>gi|153012225|ref|YP_001381740.1| NADH-plastoquinone oxidoreductase subunit K [Medicago truncatula]
          Length = 235

 Score =  157 bits (397), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 70/147 (47%), Positives = 102/147 (69%), Gaps = 1/147 (0%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
           T    + T+++ L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPRQ+
Sbjct: 21  TKNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 80

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152
           D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++PV
Sbjct: 81  DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 140

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179
           D+Y+PGCPP  EA+I  I  L+KKI R
Sbjct: 141 DVYLPGCPPKPEAVIDAITKLRKKISR 167


>gi|139389646|ref|YP_001123203.1| photosystem II G protein [Arabis hirsuta]
 gi|218527883|sp|A4QK22|NDHK_ARAHI RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
 gi|134286401|dbj|BAF50027.1| photosystem II G protein [Arabis hirsuta]
          Length = 225

 Score =  157 bits (397), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 70/147 (47%), Positives = 102/147 (69%), Gaps = 1/147 (0%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
           T    + T+++ L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPRQ+
Sbjct: 13  TKNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 72

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152
           D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++PV
Sbjct: 73  DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 132

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179
           D+Y+PGCPP  EA+I  I  L+KKI R
Sbjct: 133 DVYLPGCPPKPEAVIDAITKLRKKIAR 159


>gi|1173548|gb|AAC44353.1| NADH dehydrogenase type 1 subunit [Nostoc sp. PCC 7120]
          Length = 245

 Score =  157 bits (397), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 70/143 (48%), Positives = 101/143 (70%), Gaps = 1/143 (0%)

Query: 36  KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDV 95
           +  ++T+VD L  WAR  SL  + FG ACC +E       R+D +RFG  PR+SPRQ+D+
Sbjct: 30  ENVILTTVDDLYNWARLSSLWPLLFGTACCFIEFAALIGSRFDFDRFGLIPRSSPRQADL 89

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPVDI 154
           +I AGT+T KMA  + R+Y++MPEP+YVI+MG+C   GG +   S + VRG D+++PVD+
Sbjct: 90  IITAGTITMKMAPQMVRLYEKMPEPKYVIAMGACTITGGMFSVESPTAVRGVDKLIPVDV 149

Query: 155 YVPGCPPTAEALIYGILLLQKKI 177
           Y+PGCPP  EA+I  ++ L+KKI
Sbjct: 150 YLPGCPPRPEAIIDAMIKLRKKI 172


>gi|323149086|ref|YP_004222650.1| NADH-plastoquinone oxidoreductase subunit K [Anthriscus cerefolium]
 gi|289645579|gb|ADD13642.1| NADH-plastoquinone oxidoreductase subunit K [Anthriscus cerefolium]
          Length = 225

 Score =  157 bits (397), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 70/147 (47%), Positives = 101/147 (68%), Gaps = 1/147 (0%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
           T    + T+ + L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPRQ+
Sbjct: 13  TQNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 72

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152
           D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++PV
Sbjct: 73  DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTISGGMFSTDSYSTVRGVDKLIPV 132

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179
           D+Y+PGCPP  EA+I  I  L+KKI R
Sbjct: 133 DVYLPGCPPKPEAVIDAITKLRKKISR 159


>gi|197294100|ref|YP_002149721.1| NADH-plastoquinone oxidoreductase subunit K [Cicer arietinum]
 gi|197089788|gb|ACH41058.1| NADH-plastoquinone oxidoreductase subunit K [Cicer arietinum]
          Length = 227

 Score =  157 bits (397), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 70/147 (47%), Positives = 102/147 (69%), Gaps = 1/147 (0%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
           T    + T+++ L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPRQ+
Sbjct: 13  TKNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 72

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152
           D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++PV
Sbjct: 73  DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 132

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179
           D+Y+PGCPP  EA+I  I  L+KKI R
Sbjct: 133 DVYLPGCPPKPEAVIDAITKLRKKISR 159


>gi|139389100|ref|YP_001123818.1| NADH dehydrogenase subunit K [Nasturtium officinale]
 gi|218527914|sp|A4QLT7|NDHK_NASOF RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
 gi|134287023|dbj|BAF50642.1| photosystem II G protein [Nasturtium officinale]
          Length = 225

 Score =  157 bits (397), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 70/147 (47%), Positives = 102/147 (69%), Gaps = 1/147 (0%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
           T    + T+++ L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPRQ+
Sbjct: 13  TKNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 72

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152
           D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++PV
Sbjct: 73  DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 132

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179
           D+Y+PGCPP  EA+I  I  L+KKI R
Sbjct: 133 DVYLPGCPPKPEAVIDAITKLRKKIAR 159


>gi|156586759|gb|ABU85211.1| NADH-plastoquinone oxidoreductase subunit K [Anethum graveolens]
          Length = 225

 Score =  157 bits (397), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 70/147 (47%), Positives = 101/147 (68%), Gaps = 1/147 (0%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
           T    + T+ + L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPRQ+
Sbjct: 13  TQNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 72

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152
           D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++PV
Sbjct: 73  DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTISGGMFSTDSYSTVRGVDKLIPV 132

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179
           D+Y+PGCPP  EA+I  I  L+KKI R
Sbjct: 133 DVYLPGCPPKPEAVIDAITKLRKKISR 159


>gi|182412309|ref|YP_001817375.1| NADH dehydrogenase subunit B [Opitutus terrae PB90-1]
 gi|238065012|sp|B1ZRT2|NUOB1_OPITP RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName:
           Full=NADH dehydrogenase I subunit B 1; AltName:
           Full=NDH-1 subunit B 1
 gi|177839523|gb|ACB73775.1| NADH-quinone oxidoreductase, B subunit [Opitutus terrae PB90-1]
          Length = 171

 Score =  157 bits (397), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 75/149 (50%), Positives = 103/149 (69%), Gaps = 2/149 (1%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APRAS 89
           S     G +V+  D ++ W RT S+  M  GLACCA+E+MQ    R+D+ RFG    R S
Sbjct: 11  SSAIEGGIVVSKADAVINWIRTNSMWPMPMGLACCAIELMQVGNGRFDIARFGAEVMRFS 70

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQSD MIVAG++T KMA  +RR+YDQM  P++VI+MG+CA+ GG Y  SY+ ++G DRI
Sbjct: 71  PRQSDCMIVAGSVTYKMAPQIRRIYDQMMSPKWVIAMGACASSGGMYR-SYAHMQGVDRI 129

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           +PVD+Y+ GCPP  E ++  ++ LQ KIR
Sbjct: 130 LPVDVYISGCPPRPEGILDALMKLQAKIR 158


>gi|283850904|ref|ZP_06368190.1| NADH dehydrogenase I, D subunit [Desulfovibrio sp. FW1012B]
 gi|283573827|gb|EFC21801.1| NADH dehydrogenase I, D subunit [Desulfovibrio sp. FW1012B]
          Length = 790

 Score =  157 bits (397), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 77/140 (55%), Positives = 99/140 (70%), Gaps = 2/140 (1%)

Query: 39  LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMI 97
           L    D ++ WAR  S+    FGL+CC VE   A  PRYD+ R+G    R SPRQ+DV+I
Sbjct: 8   LFRPTDHIINWARKNSIWPFFFGLSCCFVEEATAWGPRYDIARYGSEVFRGSPRQADVLI 67

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           V+GTL  K+A    R+Y+QM +P++VISMGSC+N GG Y   YSVV+G D+I+PVD+Y+P
Sbjct: 68  VSGTLFTKVAPVALRLYEQMSDPKWVISMGSCSNSGGMYDV-YSVVQGTDQILPVDVYIP 126

Query: 158 GCPPTAEALIYGILLLQKKI 177
           GCPP  EAL  G+LLLQKKI
Sbjct: 127 GCPPRPEALFDGLLLLQKKI 146


>gi|262400780|gb|ACY66269.1| NADH dehydrogenase subunit K [Brassica napus]
          Length = 225

 Score =  157 bits (397), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 70/147 (47%), Positives = 102/147 (69%), Gaps = 1/147 (0%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
           T    + T+++ L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPRQ+
Sbjct: 13  TKNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 72

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152
           D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++PV
Sbjct: 73  DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 132

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179
           D+Y+PGCPP  EA+I  I  L+KKI R
Sbjct: 133 DVYLPGCPPKPEAVIDAITKLRKKIAR 159


>gi|154795255|ref|NP_862758.2| NADH dehydrogenase subunit K [Calycanthus floridus var. glaucus]
 gi|218527905|sp|Q7YJW8|NDHK_CALFG RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
          Length = 225

 Score =  157 bits (397), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 69/147 (46%), Positives = 102/147 (69%), Gaps = 1/147 (0%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
           T    + T+++ L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPRQ+
Sbjct: 13  TQNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 72

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152
           D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++PV
Sbjct: 73  DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 132

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179
           D+Y+PGCPP  EA+I  I  L+KK+ R
Sbjct: 133 DVYLPGCPPKPEAVIDAITKLRKKVSR 159


>gi|139390156|ref|YP_001123729.1| NADH dehydrogenase subunit K [Lobularia maritima]
 gi|218527911|sp|A4QLJ8|NDHK_LOBMA RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
 gi|134286933|dbj|BAF50553.1| photosystem II G protein [Lobularia maritima]
          Length = 225

 Score =  157 bits (397), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 70/147 (47%), Positives = 102/147 (69%), Gaps = 1/147 (0%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
           T    + T+++ L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPRQ+
Sbjct: 13  TKNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 72

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152
           D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++PV
Sbjct: 73  DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 132

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179
           D+Y+PGCPP  EA+I  I  L+KKI R
Sbjct: 133 DVYLPGCPPKPEAVIDAITKLRKKIAR 159


>gi|295136907|ref|YP_003587739.1| NADH dehydrogenase subunit K [Lathyrus sativus]
 gi|293338629|gb|ADE43601.1| NADH dehydrogenase subunit K [Lathyrus sativus]
          Length = 225

 Score =  157 bits (397), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 70/147 (47%), Positives = 102/147 (69%), Gaps = 1/147 (0%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
           T    + T+++ L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPRQ+
Sbjct: 13  TKNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 72

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152
           D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++PV
Sbjct: 73  DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 132

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179
           D+Y+PGCPP  EA+I  I  L+KKI R
Sbjct: 133 DVYLPGCPPKPEAVIDAITKLRKKISR 159


>gi|139388098|ref|YP_001123290.1| photosystem II G protein [Barbarea verna]
 gi|218527881|sp|A4QKA9|NDHK_BARVE RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
 gi|134286489|dbj|BAF50114.1| photosystem II G protein [Barbarea verna]
          Length = 225

 Score =  157 bits (397), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 70/147 (47%), Positives = 102/147 (69%), Gaps = 1/147 (0%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
           T    + T+++ L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPRQ+
Sbjct: 13  TKNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 72

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152
           D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++PV
Sbjct: 73  DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 132

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179
           D+Y+PGCPP  EA+I  I  L+KKI R
Sbjct: 133 DVYLPGCPPKPEAVIDAITKLRKKIAR 159


>gi|1709406|sp|P52766|NDHK_LUPLU RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
 gi|881443|gb|AAB86906.1| NADH-ubiquinone oxidoreductase subunit [Lupinus luteus]
          Length = 226

 Score =  157 bits (397), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 69/147 (46%), Positives = 103/147 (70%), Gaps = 1/147 (0%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
           T    + T++++L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPRQ+
Sbjct: 13  TQNSVISTTLNELSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 72

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152
           D+++ AGT+T KMA +L R+Y+QMPEP+YVI++G+C   GG +   SYS VRG D+++PV
Sbjct: 73  DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAIGACTITGGMFSTDSYSTVRGVDKLIPV 132

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179
           D+Y+PGCPP  EA+I  I  L+KKI R
Sbjct: 133 DVYLPGCPPKPEAVIDAITKLRKKISR 159


>gi|52220814|ref|YP_086970.1| NADH dehydrogenase subunit K [Panax ginseng]
 gi|75254105|sp|Q68S02|NDHK_PANGI RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
 gi|51235317|gb|AAT98513.1| NADH dehydrogenase 32 kDa subunit [Panax ginseng]
          Length = 225

 Score =  157 bits (397), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 70/147 (47%), Positives = 101/147 (68%), Gaps = 1/147 (0%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
           T    + T+ + L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPRQ+
Sbjct: 13  TQNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 72

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152
           D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++PV
Sbjct: 73  DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTISGGMFSTDSYSTVRGVDKLIPV 132

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179
           D+Y+PGCPP  EA+I  I  L+KKI R
Sbjct: 133 DVYLPGCPPKPEAVIDAITKLRKKISR 159


>gi|66876449|gb|AAY58005.1| NdhK [Evolvulus glomeratus]
          Length = 228

 Score =  157 bits (397), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 70/147 (47%), Positives = 102/147 (69%), Gaps = 1/147 (0%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
           T    + T+++ L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPRQ+
Sbjct: 20  TTNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 79

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152
           D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++PV
Sbjct: 80  DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 139

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179
           D+Y+PGCPP  EA+I  I  L+KKI R
Sbjct: 140 DVYLPGCPPKPEAVIDAITKLRKKISR 166


>gi|328952909|ref|YP_004370243.1| NAD(P)H-quinone oxidoreductase subunit K [Desulfobacca acetoxidans
           DSM 11109]
 gi|328453233|gb|AEB09062.1| NAD(P)H-quinone oxidoreductase subunit K [Desulfobacca acetoxidans
           DSM 11109]
          Length = 162

 Score =  157 bits (397), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 75/138 (54%), Positives = 103/138 (74%), Gaps = 3/138 (2%)

Query: 43  VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGT 101
           +++++   R  SL  +TFGLACCA+EMM A   R+DL+RFG    R SPRQSD+MIVAGT
Sbjct: 15  LEEVLNLCRANSLWPITFGLACCAIEMMAAGASRFDLDRFGAGVFRPSPRQSDLMIVAGT 74

Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS--YSVVRGCDRIVPVDIYVPGC 159
           ++ KMA  + R+Y+QMP P++VI+MG+CA  GG + Y   Y++V G D+I+PVD+YVPGC
Sbjct: 75  ISKKMADPVIRLYEQMPAPKWVIAMGNCAISGGPFLYEGQYAIVPGADQIIPVDVYVPGC 134

Query: 160 PPTAEALIYGILLLQKKI 177
           PP  E L+ GIL L++KI
Sbjct: 135 PPRPEGLLEGILQLEEKI 152


>gi|91208905|ref|YP_538939.1| NADH dehydrogenase subunit K [Gossypium hirsutum]
 gi|119368503|ref|YP_913191.1| NADH dehydrogenase 27kD subunit [Gossypium barbadense]
 gi|325210934|ref|YP_004286008.1| NADH-plastoquinone oxidoreductase subunit K [Gossypium thurberi]
 gi|122201392|sp|Q2L909|NDHK_GOSHI RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
 gi|218527889|sp|A0ZZ39|NDHK_GOSBA RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
 gi|85687419|gb|ABC73631.1| NADH-plastoquinone oxidoreductase subunit K [Gossypium hirsutum]
 gi|119224865|dbj|BAF41251.1| NADH dehydrogenase 27kD subunit [Gossypium barbadense]
 gi|290775796|gb|ADD62292.1| NADH-plastoquinone oxidoreductase subunit K [Gossypium thurberi]
          Length = 225

 Score =  157 bits (397), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 70/147 (47%), Positives = 102/147 (69%), Gaps = 1/147 (0%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
           T    + T+++ L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPRQ+
Sbjct: 13  TQNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 72

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152
           D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++PV
Sbjct: 73  DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 132

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179
           D+Y+PGCPP  EA+I  I  L+KKI R
Sbjct: 133 DVYLPGCPPKPEAVIDAITKLRKKISR 159


>gi|303248401|ref|ZP_07334661.1| NADH dehydrogenase I, D subunit [Desulfovibrio fructosovorans JJ]
 gi|302490199|gb|EFL50117.1| NADH dehydrogenase I, D subunit [Desulfovibrio fructosovorans JJ]
          Length = 790

 Score =  157 bits (396), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 76/140 (54%), Positives = 100/140 (71%), Gaps = 2/140 (1%)

Query: 39  LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMI 97
           + +  D ++ WAR  SL    FGL+CC VE   A  PRYD+ R+G    R SPRQ+DV+I
Sbjct: 8   VFSPTDHIINWARKNSLWPFFFGLSCCFVEEATAWGPRYDIARYGSEVFRGSPRQADVLI 67

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           V+GT+  K+A    R+Y+QM +P++VISMGSC+N GG Y   YSVV+G D+I+PVD+Y+P
Sbjct: 68  VSGTMFKKIAPVALRLYEQMSDPKWVISMGSCSNSGGMYDV-YSVVQGSDQILPVDVYIP 126

Query: 158 GCPPTAEALIYGILLLQKKI 177
           GCPP  EAL  G+LLLQKKI
Sbjct: 127 GCPPRPEALFDGLLLLQKKI 146


>gi|290489730|gb|ADD31249.1| NADH-plastoquinone oxidoreductase subunit K protein [Euonymus
           americanus]
          Length = 228

 Score =  157 bits (396), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 70/147 (47%), Positives = 101/147 (68%), Gaps = 1/147 (0%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
           T    + T+ + L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPRQ+
Sbjct: 13  TQNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 72

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCA-NGGGYYHYSYSVVRGCDRIVPV 152
           D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++PV
Sbjct: 73  DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTESYSTVRGVDKLIPV 132

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179
           D+Y+PGCPP  EA+I  I  L+KKI R
Sbjct: 133 DVYLPGCPPKPEAVIDAITKLRKKISR 159


>gi|164597808|ref|NP_084666.2| NADH dehydrogenase subunit K [Oenothera elata subsp. hookeri]
 gi|169142697|ref|YP_001687124.1| NADH dehydrogenase subunit K [Oenothera argillicola]
 gi|169142847|ref|YP_001687270.1| NADH dehydrogenase subunit K [Oenothera glazioviana]
 gi|169142932|ref|YP_001687354.1| NADH dehydrogenase subunit K [Oenothera biennis]
 gi|169143018|ref|YP_001687438.1| NADH dehydrogenase subunit K [Oenothera parviflora]
 gi|172045789|sp|Q9MTP4|NDHK_OENEH RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
 gi|218527924|sp|B0Z4L3|NDHK_OENAR RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
 gi|218527925|sp|B0Z4U7|NDHK_OENBI RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
 gi|218527926|sp|B0Z531|NDHK_OENGL RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
 gi|218527927|sp|B0Z5B5|NDHK_OENPA RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
 gi|159792935|gb|ABW98691.1| NADH dehydrogenase subunit K [Oenothera argillicola]
 gi|159793105|gb|ABW98859.1| NADH dehydrogenase subunit K [Oenothera biennis]
 gi|159895459|gb|ABX10024.1| NADH dehydrogenase subunit K [Oenothera glazioviana]
 gi|159895544|gb|ABX10108.1| NADH dehydrogenase subunit K [Oenothera parviflora]
 gi|162423675|emb|CAB67131.2| NADH dehydrogenase subunit K [Oenothera elata subsp. hookeri]
          Length = 225

 Score =  157 bits (396), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 70/147 (47%), Positives = 101/147 (68%), Gaps = 1/147 (0%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
           T    + T+ + L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPRQ+
Sbjct: 13  TQNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 72

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152
           D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++PV
Sbjct: 73  DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 132

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179
           D+Y+PGCPP  EA+I  I  L+KKI R
Sbjct: 133 DVYLPGCPPKPEAIIDAITKLRKKISR 159


>gi|154795561|ref|NP_038400.2| NADH dehydrogenase subunit K [Mesostigma viride]
          Length = 223

 Score =  157 bits (396), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 69/141 (48%), Positives = 101/141 (71%), Gaps = 1/141 (0%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
            ++T+++ L  WAR  SL  + +G +CC +E       R+D +RFG  PR SPRQ+D++I
Sbjct: 14  LILTTLNDLYNWARLSSLWPLLYGTSCCFIEFACLLGSRFDFDRFGLVPRCSPRQADLII 73

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPVDIYV 156
            AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++PVD+Y+
Sbjct: 74  TAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYL 133

Query: 157 PGCPPTAEALIYGILLLQKKI 177
           PGCPP  EA+I  ++ L+KK+
Sbjct: 134 PGCPPKPEAIIDAVIKLRKKV 154


>gi|37520318|ref|NP_923695.1| NADH dehydrogenase subunit B [Gloeobacter violaceus PCC 7421]
 gi|81710972|sp|Q7NML6|NDHK1_GLOVI RecName: Full=NAD(P)H-quinone oxidoreductase subunit K 1; AltName:
           Full=NAD(P)H dehydrogenase I subunit K 1; AltName:
           Full=NDH-1 subunit K 1; Short=NDH-K 1
 gi|35211311|dbj|BAC88690.1| NADH dehydrogenase subunit [Gloeobacter violaceus PCC 7421]
          Length = 232

 Score =  157 bits (396), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 71/151 (47%), Positives = 107/151 (70%), Gaps = 2/151 (1%)

Query: 28  RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
            ++SE+T+   ++T+++ L  WAR  S+  + +G +CC +E       R+D +RFG  PR
Sbjct: 14  EVTSELTN-NVVLTTLNDLYNWARLSSVWPLMYGTSCCFIEFAGLIGSRFDFDRFGLVPR 72

Query: 88  ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGC 146
           ASPRQ+D++I AGT+T KMA AL  +Y+QMPEP+YVI+MG+C   GG +   SY+ VRG 
Sbjct: 73  ASPRQADLIITAGTVTMKMAPALVTLYEQMPEPKYVIAMGACTITGGMFSTDSYTTVRGV 132

Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
           D+++PVD+Y+PGCPP  EA+   I+ L+KK+
Sbjct: 133 DKLIPVDVYIPGCPPRPEAIFDAIVKLRKKM 163


>gi|122893994|ref|YP_001004190.1| NADH-plastoquinone oxidoreductase subunit K [Ranunculus macranthus]
 gi|218527923|sp|A1XGP2|NDHK_RANMC RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
 gi|85540808|gb|ABC70760.1| NADH-plastoquinone oxidoreductase subunit K [Ranunculus macranthus]
          Length = 227

 Score =  157 bits (396), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 69/150 (46%), Positives = 103/150 (68%), Gaps = 1/150 (0%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP 90
           ++ T    + T+ + L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SP
Sbjct: 10  NQTTQNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSP 69

Query: 91  RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRI 149
           RQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D++
Sbjct: 70  RQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKL 129

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           +PVD+Y+PGCPP  EA+I  I  L+KK+ R
Sbjct: 130 IPVDVYLPGCPPKPEAVIDAITKLRKKVSR 159


>gi|7525037|ref|NP_051063.1| NADH dehydrogenase subunit K [Arabidopsis thaliana]
 gi|6685682|sp|P56756|NDHK_ARATH RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
 gi|5881698|dbj|BAA84389.1| photosystem II G protein [Arabidopsis thaliana]
          Length = 225

 Score =  157 bits (396), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 71/152 (46%), Positives = 103/152 (67%), Gaps = 1/152 (0%)

Query: 29  ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88
           I    T    + T+++ L  W+R  SL  + +G +CC +E       R+D +R+G  PR+
Sbjct: 8   ILDRTTKNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRS 67

Query: 89  SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCD 147
           SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D
Sbjct: 68  SPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVD 127

Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           +++PVD+Y+PGCPP  EA+I  I  L+KKI R
Sbjct: 128 KLIPVDVYLPGCPPKPEAVIDAITKLRKKIAR 159


>gi|139389422|ref|YP_001123119.1| NADH dehydrogenase subunit K [Olimarabidopsis pumila]
 gi|218527928|sp|A4QJT7|NDHK_OLIPU RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
 gi|134286316|dbj|BAF49943.1| photosystem II G protein [Olimarabidopsis pumila]
          Length = 225

 Score =  157 bits (396), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 70/147 (47%), Positives = 102/147 (69%), Gaps = 1/147 (0%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
           T    + T+++ L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPRQ+
Sbjct: 13  TKNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 72

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152
           D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++PV
Sbjct: 73  DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 132

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179
           D+Y+PGCPP  EA+I  I  L+KKI R
Sbjct: 133 DVYLPGCPPKPEAVIDAITKLRKKIAR 159


>gi|156598395|gb|ABU85457.1| NADH-plastoquinone oxidoreductase subunit K [Musa acuminata]
          Length = 284

 Score =  157 bits (396), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 72/156 (46%), Positives = 107/156 (68%), Gaps = 2/156 (1%)

Query: 25  DFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF 84
           +F  +   IT+   + T+++ L  W+R  SL  + +G +CC +E       R+D +R+G 
Sbjct: 64  EFPLVDKTITN-SVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGL 122

Query: 85  APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVV 143
            PR+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS V
Sbjct: 123 VPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTV 182

Query: 144 RGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           RG D+++PVD+Y+PGCPP  EA+I  I  L+KKI R
Sbjct: 183 RGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKKISR 218


>gi|108796798|ref|YP_636385.1| NADH dehydrogenase subunit K [Staurastrum punctulatum]
 gi|122211808|sp|Q32RZ1|NDHK_STAPU RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
 gi|61393566|gb|AAX45707.1| 27 kDa subunit of NADH-ubiquinone oxidoreductase [Staurastrum
           punctulatum]
          Length = 280

 Score =  157 bits (396), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 72/177 (40%), Positives = 113/177 (63%), Gaps = 5/177 (2%)

Query: 6   VNQKIISGQSSCSLEKVDADFSRISSEITHKGF----LVTSVDQLVTWARTGSLMWMTFG 61
           +N ++    +S   E  ++  + +S  IT +      ++T+      W R  SL  + +G
Sbjct: 3   INSELFRSSNSFQEEGFESVTNGLSFSITEENISDSVILTTFHDFTNWIRLSSLWPLLYG 62

Query: 62  LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPR 121
            +CC +E       R+D +R+G  PR+SPRQ+D++I AGT+T KMA +L R+Y+QMPEP+
Sbjct: 63  TSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLIITAGTVTMKMAPSLVRLYEQMPEPK 122

Query: 122 YVISMGSCANGGGYYHY-SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
           YVI+MG+C   GG +   SYS VRG D+++PVD+Y+PGCPP  EA+I  ++ L+KK+
Sbjct: 123 YVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEAIIDAVIKLRKKV 179


>gi|290489732|gb|ADD31250.1| NADH-plastoquinone oxidoreductase subunit K protein [Ficus sp.
           Moore 315]
          Length = 253

 Score =  157 bits (396), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 70/147 (47%), Positives = 100/147 (68%), Gaps = 1/147 (0%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
           T    + T+   L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPRQ+
Sbjct: 41  TQNSVISTTSSDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 100

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152
           D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++PV
Sbjct: 101 DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 160

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179
           D+Y+PGCPP  EA+I  I  L+KKI R
Sbjct: 161 DVYLPGCPPKPEAVIDAITKLRKKISR 187


>gi|161784196|ref|YP_001595512.1| ndhK protein [Lemna minor]
 gi|88696774|gb|ABD48499.1| ndhK protein [Lemna minor]
          Length = 243

 Score =  157 bits (396), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 69/140 (49%), Positives = 100/140 (71%), Gaps = 1/140 (0%)

Query: 41  TSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAG 100
           T+++ L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPRQ+D+++ AG
Sbjct: 38  TTLNDLSNWSRLSSLWPLLYGTSCCFIEFAALIGSRFDFDRYGLVPRSSPRQADLILTAG 97

Query: 101 TLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPVDIYVPGC 159
           T+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++PVD+Y+PGC
Sbjct: 98  TVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGC 157

Query: 160 PPTAEALIYGILLLQKKIRR 179
           PP  EA+I  I  L+KKI R
Sbjct: 158 PPKPEAVIDAITKLRKKISR 177


>gi|290489742|gb|ADD31255.1| NADH-plastoquinone oxidoreductase subunit K protein [Plumbago
           auriculata]
          Length = 285

 Score =  157 bits (396), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 70/146 (47%), Positives = 102/146 (69%), Gaps = 1/146 (0%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           IT    + T+++ L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPRQ
Sbjct: 72  ITQNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQ 131

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVP 151
           +D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++P
Sbjct: 132 ADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIP 191

Query: 152 VDIYVPGCPPTAEALIYGILLLQKKI 177
           VD+Y+PGCPP  EA+I  I  L+KKI
Sbjct: 192 VDVYLPGCPPKPEAVIDAITKLRKKI 217


>gi|218512132|sp|Q2MI96|NDHK_SOLLC RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
 gi|218512133|sp|Q2VEH3|NDHK_SOLTU RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
 gi|218527953|sp|Q2MII3|NDHK_SOLBU RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
          Length = 225

 Score =  157 bits (396), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 70/140 (50%), Positives = 100/140 (71%), Gaps = 1/140 (0%)

Query: 41  TSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAG 100
           T+++ L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPRQSD+++ AG
Sbjct: 20  TTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQSDLILTAG 79

Query: 101 TLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPVDIYVPGC 159
           T+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++PVD+Y+PGC
Sbjct: 80  TVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGC 139

Query: 160 PPTAEALIYGILLLQKKIRR 179
           PP  EA+I  I  L+KKI R
Sbjct: 140 PPKPEAVIDAITKLRKKISR 159


>gi|124360833|gb|ABN08805.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit [Medicago
           truncatula]
          Length = 227

 Score =  157 bits (396), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 70/147 (47%), Positives = 102/147 (69%), Gaps = 1/147 (0%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
           T    + T+++ L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPRQ+
Sbjct: 13  TKNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 72

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152
           D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++PV
Sbjct: 73  DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 132

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179
           D+Y+PGCPP  EA+I  I  L+KKI R
Sbjct: 133 DVYLPGCPPKPEAVIDAITKLRKKISR 159


>gi|309322179|ref|YP_003934094.1| NADH-plastoquinone oxidoreductase subunit K [Geranium palmatum]
 gi|197131358|gb|ACH47197.1| NADH-plastoquinone oxidoreductase subunit K [Geranium palmatum]
 gi|300069272|gb|ADJ66393.1| NADH-plastoquinone oxidoreductase subunit K [Geranium palmatum]
          Length = 225

 Score =  157 bits (396), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 72/150 (48%), Positives = 102/150 (68%), Gaps = 1/150 (0%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
           T    L T+ + L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPRQ+
Sbjct: 13  TQNSVLSTTPNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 72

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152
           D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++PV
Sbjct: 73  DLVLTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 132

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
           D+Y+PGCPP  EA+I  I  L+KKI R  N
Sbjct: 133 DVYLPGCPPKPEAVIDAITKLRKKISREIN 162


>gi|154795239|ref|YP_001312203.2| NADH dehydrogenase subunit K [Cycas taitungensis]
 gi|218527897|sp|A6H5H8|NDHK_CYCTA RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
          Length = 261

 Score =  157 bits (396), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 70/149 (46%), Positives = 103/149 (69%), Gaps = 1/149 (0%)

Query: 32  EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPR 91
           + T    + T+++ L  WAR  SL  + +G +CC +E       R+D +R+G  PR+SPR
Sbjct: 11  QTTPNSVISTTLNDLSNWARLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPR 70

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIV 150
           Q+D++I AGT+T KMA +L R+Y+QMP P+YVI+MG+C   GG +   SYS VRG D+++
Sbjct: 71  QADLIITAGTVTMKMAPSLVRLYEQMPGPKYVIAMGACTITGGMFSTDSYSTVRGVDKLI 130

Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           PVD+Y+PGCPP  EA+I  I+ L+KK+ R
Sbjct: 131 PVDVYLPGCPPKPEAIIDAIIKLRKKVAR 159


>gi|114054474|gb|ABI49867.1| NADH-plastoquinone oxidoreductase subunit K [Nandina domestica]
          Length = 285

 Score =  157 bits (396), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 70/148 (47%), Positives = 102/148 (68%), Gaps = 1/148 (0%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           IT    + T+ + L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPRQ
Sbjct: 72  ITQNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQ 131

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVP 151
           +D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++P
Sbjct: 132 ADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIP 191

Query: 152 VDIYVPGCPPTAEALIYGILLLQKKIRR 179
           VD+Y+PGCPP  EA+I  I  L+KK+ R
Sbjct: 192 VDVYLPGCPPKPEAVIDAITKLRKKVSR 219


>gi|50250331|emb|CAF28597.1| photosystem II G protein [Nymphaea alba]
          Length = 253

 Score =  157 bits (396), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 69/147 (46%), Positives = 102/147 (69%), Gaps = 1/147 (0%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
           T    + T+++ L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPRQ+
Sbjct: 41  TPNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 100

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152
           D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++PV
Sbjct: 101 DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 160

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179
           D+Y+PGCPP  EA+I  I  L+KK+ R
Sbjct: 161 DVYLPGCPPKPEAIIDAITKLRKKVSR 187


>gi|218527934|sp|A9QC82|NDHK_TRACE RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
 gi|156598845|gb|ABU85675.1| NADH-plastoquinone oxidoreductase subunit K [Trachelium caeruleum]
          Length = 227

 Score =  157 bits (396), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 70/147 (47%), Positives = 102/147 (69%), Gaps = 1/147 (0%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
           T    + T+ ++L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPRQ+
Sbjct: 13  TQNSVISTTPNELSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 72

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152
           D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++PV
Sbjct: 73  DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLLPV 132

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179
           D+Y+PGCPP  EA+I  I  L+KKI R
Sbjct: 133 DVYLPGCPPKPEAVIDAITKLRKKISR 159


>gi|290489720|gb|ADD31244.1| NADH-plastoquinone oxidoreductase subunit K protein [Nerium
           oleander]
          Length = 246

 Score =  157 bits (396), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 69/146 (47%), Positives = 101/146 (69%), Gaps = 1/146 (0%)

Query: 35  HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSD 94
               + T+++ L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPRQ+D
Sbjct: 33  QNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQAD 92

Query: 95  VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPVD 153
           +++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++PVD
Sbjct: 93  LILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVD 152

Query: 154 IYVPGCPPTAEALIYGILLLQKKIRR 179
           +Y+PGCPP  EA+I  I  L+KKI R
Sbjct: 153 VYLPGCPPKPEAVIDAITKLRKKISR 178


>gi|154795230|ref|YP_567080.2| NADH dehydrogenase subunit K [Vitis vinifera]
 gi|218527949|sp|Q0ZJ16|NDHK_VITVI RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
          Length = 225

 Score =  157 bits (396), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 70/147 (47%), Positives = 101/147 (68%), Gaps = 1/147 (0%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
           T    + T+ + L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPRQ+
Sbjct: 13  TQNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 72

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152
           D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++PV
Sbjct: 73  DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 132

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179
           D+Y+PGCPP  EA+I  I  L+KKI R
Sbjct: 133 DVYLPGCPPKPEAVIDAITKLRKKISR 159


>gi|82702143|ref|YP_411709.1| NADH dehydrogenase subunit B [Nitrosospira multiformis ATCC 25196]
 gi|123544779|sp|Q2YAA4|NUOB1_NITMU RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName:
           Full=NADH dehydrogenase I subunit B 1; AltName:
           Full=NDH-1 subunit B 1
 gi|82410208|gb|ABB74317.1| NADH dehydrogenase subunit B [Nitrosospira multiformis ATCC 25196]
          Length = 221

 Score =  157 bits (396), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 78/148 (52%), Positives = 101/148 (68%), Gaps = 2/148 (1%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RAS 89
            E   +  L+T +  LV W R  S+    FGL+CC VEM  +   +YDL RFG    RAS
Sbjct: 29  EEDGRRSVLLTRLQDLVAWGRKNSVWPYNFGLSCCYVEMATSFTSKYDLARFGSEVIRAS 88

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQ+D+++++GT+  KMA  L+R+YDQM EPR+VISMGSCAN GG Y   YSVV+G DR 
Sbjct: 89  PRQADLIVISGTVFIKMAPVLQRLYDQMLEPRWVISMGSCANSGGMYDI-YSVVQGVDRF 147

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKI 177
           +PVD+YVPGCPP  +A + G+ LLQ  I
Sbjct: 148 LPVDVYVPGCPPRPDAFMQGLNLLQDAI 175


>gi|218527882|sp|A2T337|NDHK_ANGEV RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
 gi|110628308|gb|ABG79604.1| NADH-plastoquinone oxidoreductase subunit K [Angiopteris evecta]
          Length = 250

 Score =  156 bits (395), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 68/138 (49%), Positives = 99/138 (71%), Gaps = 1/138 (0%)

Query: 41  TSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAG 100
           T+++    WAR  SL  + +G +CC +E       R+D +R+G  PR+SPRQ+D++I AG
Sbjct: 38  TNLNDFSNWARLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLIITAG 97

Query: 101 TLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPVDIYVPGC 159
           T+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++PVD+Y+PGC
Sbjct: 98  TVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGIDKLIPVDVYLPGC 157

Query: 160 PPTAEALIYGILLLQKKI 177
           PP  EA+I  I+ L+KK+
Sbjct: 158 PPKPEAIIDAIIKLRKKV 175


>gi|197131362|gb|ACH47199.1| NADH-plastoquinone oxidoreductase subunit K [Sarcocaulon
           vanderietiae]
          Length = 213

 Score =  156 bits (395), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 72/150 (48%), Positives = 102/150 (68%), Gaps = 1/150 (0%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
           T    L T+ + L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPRQ+
Sbjct: 13  TQNSVLSTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 72

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152
           D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++PV
Sbjct: 73  DLVLTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 132

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
           D+Y+PGCPP  EA+I  I  L+KKI R  N
Sbjct: 133 DVYLPGCPPKPEAVIDAITKLRKKIAREIN 162


>gi|157325534|ref|YP_001468312.1| NADH dehydrogenase subunit K [Ipomoea purpurea]
 gi|218527909|sp|A7Y3E1|NDHK_IPOPU RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
 gi|157056762|gb|ABV02352.1| NADH-plastoquinone oxidoreductase subunit K [Ipomoea purpurea]
          Length = 235

 Score =  156 bits (395), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 69/142 (48%), Positives = 101/142 (71%), Gaps = 1/142 (0%)

Query: 39  LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIV 98
           + T+++ L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPRQ+D+++ 
Sbjct: 18  ISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILT 77

Query: 99  AGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPVDIYVP 157
           AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++PVD+Y+P
Sbjct: 78  AGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLP 137

Query: 158 GCPPTAEALIYGILLLQKKIRR 179
           GCPP  EA+I  I  L+KKI R
Sbjct: 138 GCPPKPEAIIDAITKLRKKISR 159


>gi|154795251|ref|YP_001001538.2| NADH-plastoquinone oxidoreductase subunit K [Nuphar advena]
 gi|218527955|sp|A1XFV9|NDHK_NUPAD RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
          Length = 225

 Score =  156 bits (395), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 69/147 (46%), Positives = 102/147 (69%), Gaps = 1/147 (0%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
           T    + T+++ L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPRQ+
Sbjct: 13  TPNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 72

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152
           D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++PV
Sbjct: 73  DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 132

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179
           D+Y+PGCPP  EA+I  I  L+KK+ R
Sbjct: 133 DVYLPGCPPKPEAIIDAITKLRKKVSR 159


>gi|317051070|ref|YP_004112186.1| NADH-quinone oxidoreductase subunit B [Desulfurispirillum indicum
           S5]
 gi|316946154|gb|ADU65630.1| NADH-quinone oxidoreductase, B subunit [Desulfurispirillum indicum
           S5]
          Length = 183

 Score =  156 bits (395), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 70/142 (49%), Positives = 105/142 (73%), Gaps = 2/142 (1%)

Query: 39  LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMI 97
           + T++D +V WAR  SL  MTFG ACCA+E M A+  ++DL RFG    R SPRQ+D+++
Sbjct: 16  ITTTMDAVVNWARQYSLWPMTFGTACCAIEFMSAAASQHDLSRFGAEVIRFSPRQADLLL 75

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGT++ K A  L+R+Y+QMP+P++VISMG+CA  GG+Y  +Y  ++G D+++PVD Y+ 
Sbjct: 76  VAGTISMKQAPVLKRIYEQMPDPKWVISMGACACSGGFYD-NYCTLQGIDQVIPVDAYIS 134

Query: 158 GCPPTAEALIYGILLLQKKIRR 179
           GCPP  EA++  + L+QKK++ 
Sbjct: 135 GCPPRPEAILDALFLIQKKLKE 156


>gi|134299891|ref|YP_001113387.1| NADH-quinone oxidoreductase subunit B [Desulfotomaculum reducens
           MI-1]
 gi|218527989|sp|A4J659|NUOB_DESRM RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|134052591|gb|ABO50562.1| NADH dehydrogenase subunit B [Desulfotomaculum reducens MI-1]
          Length = 196

 Score =  156 bits (395), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 76/140 (54%), Positives = 105/140 (75%), Gaps = 2/140 (1%)

Query: 40  VTSVDQLVTWARTGSLMWMTFGLACCAVE-MMQASMPRYDLERFGFAP-RASPRQSDVMI 97
           V  +++L+  AR  SL  M FGLACCA+E +M A+M R+DL RFG+   RASPRQ+DVM+
Sbjct: 45  VGPLEKLLNLARANSLWPMGFGLACCAIEGLMAANMARFDLARFGYEVMRASPRQADVML 104

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           V GT+T K A  + R+Y+QM EP+YVI+MGSCA  GG +  SYSVV G D+++PVD+Y+P
Sbjct: 105 VCGTVTKKAAPFVVRLYEQMAEPKYVIAMGSCAISGGPFVDSYSVVPGVDKLIPVDVYIP 164

Query: 158 GCPPTAEALIYGILLLQKKI 177
           GC P  +A+I+G + L++KI
Sbjct: 165 GCAPRPDAVIHGFMKLKEKI 184


>gi|158334544|ref|YP_001515716.1| NADH dehydrogenase subunit B [Acaryochloris marina MBIC11017]
 gi|218527876|sp|B0C6I1|NDHK1_ACAM1 RecName: Full=NAD(P)H-quinone oxidoreductase subunit K 1; AltName:
           Full=NAD(P)H dehydrogenase I subunit K 1; AltName:
           Full=NDH-1 subunit K 1; Short=NDH-K 1
 gi|158304785|gb|ABW26402.1| proton-translocating NAD(P)H-quinone oxidoreductase, chain B,
           putative [Acaryochloris marina MBIC11017]
          Length = 232

 Score =  156 bits (395), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 76/163 (46%), Positives = 112/163 (68%), Gaps = 7/163 (4%)

Query: 27  SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP 86
           S+I  E++ +  +++SV  L  WAR  SL  + +G ACC +E+      R+D +RFG  P
Sbjct: 13  SQIPQELS-ENVILSSVSDLYDWARLSSLWPLMYGTACCFIEIAAMIGSRFDFDRFGLVP 71

Query: 87  RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCA-NGGGYYHYSYSVVRG 145
           R+SPRQ+D++I AGT+T KMA AL R+Y+QMP+P+YVI+MG+C   GG +   S + VRG
Sbjct: 72  RSSPRQADLIITAGTVTMKMAPALVRLYEQMPDPKYVIAMGACTITGGMFSSDSTTAVRG 131

Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKI-----RRVGNV 183
            D+++PVD+Y+PGCPP  EA++  I+ L+KKI     R  GN+
Sbjct: 132 VDKLIPVDVYLPGCPPRPEAVMDAIVKLRKKIANEDVRERGNL 174


>gi|139387440|ref|YP_001122794.1| NADH-plastoquinone oxidoreductase subunit K [Phaseolus vulgaris]
 gi|218527930|sp|A4GG93|NDHK_PHAVU RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
 gi|112030962|gb|ABH88074.1| NADH-plastoquinone oxidoreductase subunit K [Phaseolus vulgaris]
 gi|158187161|gb|ABW22794.1| NADH-plastoquinone oxidoreductase subunit K [Phaseolus vulgaris]
          Length = 212

 Score =  156 bits (395), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 69/149 (46%), Positives = 102/149 (68%), Gaps = 1/149 (0%)

Query: 32  EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPR 91
           + T    + T+++    W+R  SL  + +G +CC +E       R+D +R+G  PR+SPR
Sbjct: 11  QTTQNSVISTTLNDFSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPR 70

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIV 150
           Q+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++
Sbjct: 71  QADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLI 130

Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           PVD+Y+PGCPP  EA+I  I  L+KKI R
Sbjct: 131 PVDVYLPGCPPKPEAIIDAITKLRKKISR 159


>gi|284928645|ref|YP_003421167.1| NADH dehydrogenase subunit B [cyanobacterium UCYN-A]
 gi|284809104|gb|ADB94809.1| NADH dehydrogenase subunit B [cyanobacterium UCYN-A]
          Length = 247

 Score =  156 bits (395), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 75/177 (42%), Positives = 113/177 (63%), Gaps = 5/177 (2%)

Query: 6   VNQKIISGQSSCSLEKVDADFSRISS-EITH---KGFLVTSVDQLVTWARTGSLMWMTFG 61
           +NQ +    S+    + +   + IS   IT    +  ++T+VD L  WAR  SL  + +G
Sbjct: 1   MNQNLTPDLSTIEQSQKEKVLNPISPGNITQDLSENIILTTVDDLHNWARLSSLWPLLYG 60

Query: 62  LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPR 121
            ACC +E       R+D +RFG  PR SPRQ+D+++VAGT+T KMA AL R+Y++MP P+
Sbjct: 61  TACCFIEFAALIGSRFDFDRFGLVPRCSPRQADLLLVAGTVTMKMAPALVRLYEEMPSPK 120

Query: 122 YVISMGSCA-NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
           YVI+MG+C   GG +   S + VRG D+++PVD+Y+PGCPP  EA+   ++ L+KK+
Sbjct: 121 YVIAMGACTITGGMFSRDSTTTVRGVDKLIPVDVYIPGCPPRPEAIFDAVIKLRKKV 177


>gi|154795231|ref|YP_053159.2| NADH dehydrogenase subunit K [Nymphaea alba]
 gi|218527956|sp|Q6EW44|NDHK_NYMAL RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
          Length = 225

 Score =  156 bits (395), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 69/147 (46%), Positives = 102/147 (69%), Gaps = 1/147 (0%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
           T    + T+++ L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPRQ+
Sbjct: 13  TPNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 72

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152
           D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++PV
Sbjct: 73  DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 132

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179
           D+Y+PGCPP  EA+I  I  L+KK+ R
Sbjct: 133 DVYLPGCPPKPEAIIDAITKLRKKVSR 159


>gi|154795253|ref|YP_001294274.2| NADH-plastoquinone oxidoreductase subunit K [Illicium oligandrum]
 gi|218527944|sp|A6MMU8|NDHK_ILLOL RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
          Length = 225

 Score =  156 bits (395), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 69/147 (46%), Positives = 101/147 (68%), Gaps = 1/147 (0%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
           T    + T+ + L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPRQ+
Sbjct: 13  TQNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 72

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152
           D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++PV
Sbjct: 73  DIILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 132

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179
           D+Y+PGCPP  EA+I  I  L+KK+ R
Sbjct: 133 DVYLPGCPPKPEAIIDAITKLRKKLSR 159


>gi|154795216|ref|YP_740206.2| NADH-plastoquinone oxidoreductase subunit K [Liriodendron
           tulipifera]
 gi|218527962|sp|Q0G9L5|NDHK_LIRTU RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
          Length = 225

 Score =  156 bits (395), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 69/147 (46%), Positives = 101/147 (68%), Gaps = 1/147 (0%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
           T    + T+ + L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPRQ+
Sbjct: 13  TQNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 72

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152
           D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++PV
Sbjct: 73  DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 132

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179
           D+Y+PGCPP  EA+I  I  L+KK+ R
Sbjct: 133 DVYLPGCPPKPEAVIDAITKLRKKVSR 159


>gi|108802647|ref|YP_636303.1| NADH dehydrogenase subunit K [Eucalyptus globulus subsp. globulus]
 gi|60460813|gb|AAX21033.1| NADH-plastoquinone oxidoreductase subunit K [Eucalyptus globulus
           subsp. globulus]
          Length = 284

 Score =  156 bits (395), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 70/147 (47%), Positives = 102/147 (69%), Gaps = 1/147 (0%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
           T    + T+++ L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPRQ+
Sbjct: 72  TQNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 131

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152
           D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++PV
Sbjct: 132 DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 191

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179
           D+Y+PGCPP  EA+I  I  L+KKI R
Sbjct: 192 DVYLPGCPPKPEAVIDAITKLRKKIAR 218


>gi|290489712|gb|ADD31240.1| NADH-plastoquinone oxidoreductase subunit K protein [Ilex cornuta]
          Length = 225

 Score =  156 bits (395), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 70/147 (47%), Positives = 101/147 (68%), Gaps = 1/147 (0%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
           T    + T+ + L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPRQ+
Sbjct: 13  TQNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 72

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152
           D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++PV
Sbjct: 73  DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 132

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179
           D+Y+PGCPP  EA+I  I  L+KKI R
Sbjct: 133 DVYLPGCPPKPEAVIDAITKLRKKISR 159


>gi|290489734|gb|ADD31251.1| NADH-plastoquinone oxidoreductase subunit K protein [Gunnera
           manicata]
          Length = 283

 Score =  156 bits (395), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 70/147 (47%), Positives = 101/147 (68%), Gaps = 1/147 (0%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
           T    + T+ + L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPRQ+
Sbjct: 71  TQNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 130

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152
           D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++PV
Sbjct: 131 DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 190

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179
           D+Y+PGCPP  EA+I  I  L+KKI R
Sbjct: 191 DVYLPGCPPKPEAVIDAITKLRKKISR 217


>gi|139388914|ref|YP_001123641.1| NADH dehydrogenase subunit K [Lepidium virginicum]
 gi|218527910|sp|A4QLB0|NDHK_LEPVR RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
 gi|134286844|dbj|BAF50465.1| photosystem II G protein [Lepidium virginicum]
          Length = 225

 Score =  156 bits (395), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 70/147 (47%), Positives = 102/147 (69%), Gaps = 1/147 (0%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
           T    + T+++ L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPRQ+
Sbjct: 13  TTNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 72

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152
           D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++PV
Sbjct: 73  DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 132

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179
           D+Y+PGCPP  EA+I  I  L+KKI R
Sbjct: 133 DVYLPGCPPKPEAVIDAITKLRKKIAR 159


>gi|139387256|ref|YP_001123377.1| NADH dehydrogenase subunit K [Capsella bursa-pastoris]
 gi|218527884|sp|A4QKJ6|NDHK_CAPBU RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
 gi|134286577|dbj|BAF50201.1| photosystem II G protein [Capsella bursa-pastoris]
          Length = 225

 Score =  156 bits (395), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 70/147 (47%), Positives = 101/147 (68%), Gaps = 1/147 (0%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
           T    + T+++ L  W R  SL  + +G +CC +E       R+D +R+G  PR+SPRQ+
Sbjct: 13  TKNSVISTTLNDLSNWTRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 72

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152
           D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++PV
Sbjct: 73  DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 132

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179
           D+Y+PGCPP  EA+I  I  L+KKI R
Sbjct: 133 DVYLPGCPPKPEAVIDAITKLRKKIAR 159


>gi|197359653|gb|ACH69868.1| NADH-plastoquinone oxidoreductase subunit K [Aneura sp. Shaw 702]
          Length = 232

 Score =  156 bits (395), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 70/151 (46%), Positives = 104/151 (68%), Gaps = 1/151 (0%)

Query: 30  SSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS 89
           S +      ++T+++    WAR  SL  + +G +CC +E       R+D +R+G  PR+S
Sbjct: 9   SDKTVTDSIILTTLNDFSNWARLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSS 68

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDR 148
           PRQ+D++I AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SY+ VRG D+
Sbjct: 69  PRQADLVITAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYTTVRGVDK 128

Query: 149 IVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           ++PVDIY+PGCPP  EA+I  I+ L+K+I R
Sbjct: 129 LIPVDIYLPGCPPRPEAVIDAIIKLRKRIAR 159


>gi|139389954|ref|YP_001123554.1| photosystem II G protein [Draba nemorosa]
 gi|218527888|sp|A4QL23|NDHK_DRANE RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
 gi|134286756|dbj|BAF50378.1| photosystem II G protein [Draba nemorosa]
          Length = 225

 Score =  156 bits (395), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 70/147 (47%), Positives = 101/147 (68%), Gaps = 1/147 (0%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
           T    + T+++ L  W+R  SL    +G +CC +E       R+D +R+G  PR+SPRQ+
Sbjct: 13  TKNSVISTTLNDLSNWSRLSSLWPFLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 72

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152
           D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++PV
Sbjct: 73  DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 132

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179
           D+Y+PGCPP  EA+I  I  L+KKI R
Sbjct: 133 DVYLPGCPPKPEAVIDAITKLRKKIAR 159


>gi|113200912|gb|ABI32428.1| NADH-plastoquinone oxidoreductase subunit K [Daucus carota]
          Length = 283

 Score =  156 bits (395), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 70/147 (47%), Positives = 101/147 (68%), Gaps = 1/147 (0%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
           T    + T+ + L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPRQ+
Sbjct: 71  TQNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 130

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152
           D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++PV
Sbjct: 131 DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTISGGMFSTDSYSTVRGVDKLIPV 190

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179
           D+Y+PGCPP  EA+I  I  L+KKI R
Sbjct: 191 DVYLPGCPPKPEAVIDAITKLRKKISR 217


>gi|283794972|ref|YP_003359363.1| photosystem II G protein [Olea europaea]
 gi|330850747|ref|YP_004376425.1| photosystem II protein G [Olea europaea subsp. europaea]
 gi|281428691|gb|ADA69930.1| photosystem II G protein [Olea europaea]
 gi|291059257|gb|ADD72093.1| NADH-plastoquinone oxidoreductase subunit K [Olea europaea]
 gi|328795437|emb|CBR30319.1| photosystem II protein G [Olea europaea subsp. europaea]
          Length = 225

 Score =  156 bits (395), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 69/149 (46%), Positives = 102/149 (68%), Gaps = 1/149 (0%)

Query: 32  EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPR 91
           +      + T+++ L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPR
Sbjct: 11  QTVQNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPR 70

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIV 150
           Q+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++
Sbjct: 71  QADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLI 130

Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           PVD+Y+PGCPP  EA+I  I  L+KKI R
Sbjct: 131 PVDVYLPGCPPKPEAVIDAITKLRKKISR 159


>gi|68164807|ref|YP_247603.1| NADH dehydrogenase subunit K [Cucumis sativus]
 gi|75317261|sp|Q4VZH1|NDHK_CUCSA RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
 gi|67511402|emb|CAJ00762.1| NADH dehydrogenase subunit K [Cucumis sativus]
 gi|74027105|gb|AAZ94655.1| NADH dehydrogenase 32 kDa subunit [Cucumis sativus]
 gi|115432808|gb|ABI97421.1| NADH-plastoquinone oxidoreductase subunit K [Cucumis sativus]
          Length = 226

 Score =  156 bits (395), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 70/147 (47%), Positives = 101/147 (68%), Gaps = 1/147 (0%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
           T    + T+ + L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPRQ+
Sbjct: 13  TQTSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 72

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152
           D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++PV
Sbjct: 73  DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 132

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179
           D+Y+PGCPP  EA+I  I  L+KKI R
Sbjct: 133 DVYLPGCPPKPEAVIDAITKLRKKISR 159


>gi|118430392|ref|YP_874657.1| NADH-plastoquinone oxidoreductase subunit K [Hordeum vulgare subsp.
           vulgare]
 gi|29367118|gb|AAO72306.1| NdhK [Hordeum vulgare]
 gi|118201046|gb|ABK79417.1| NADH-plastoquinone oxidoreductase subunit K [Hordeum vulgare subsp.
           vulgare]
          Length = 245

 Score =  156 bits (395), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 68/149 (45%), Positives = 103/149 (69%), Gaps = 1/149 (0%)

Query: 32  EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPR 91
           + +    + T+++ L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPR
Sbjct: 31  QTSSNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPR 90

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIV 150
           Q+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++
Sbjct: 91  QADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLI 150

Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           PVD+Y+PGCPP  EA+I  +  L+KKI R
Sbjct: 151 PVDVYLPGCPPKPEAVIDALTKLRKKISR 179


>gi|66876431|gb|AAY57993.1| NdhK [Operculina aequisepala]
          Length = 235

 Score =  156 bits (395), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 69/142 (48%), Positives = 101/142 (71%), Gaps = 1/142 (0%)

Query: 39  LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIV 98
           + T+++ L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPRQ+D+++ 
Sbjct: 18  ISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILT 77

Query: 99  AGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPVDIYVP 157
           AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++PVD+Y+P
Sbjct: 78  AGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLP 137

Query: 158 GCPPTAEALIYGILLLQKKIRR 179
           GCPP  EA+I  I  L+KKI R
Sbjct: 138 GCPPKPEAVIDAITKLRKKISR 159


>gi|284054939|ref|ZP_06385149.1| NADH dehydrogenase subunit B [Arthrospira platensis str. Paraca]
 gi|291566379|dbj|BAI88651.1| NADH dehydrogenase subunit K [Arthrospira platensis NIES-39]
          Length = 241

 Score =  156 bits (395), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 71/151 (47%), Positives = 106/151 (70%), Gaps = 2/151 (1%)

Query: 28  RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
           +++ E++ +  ++T+VD L  WAR  SL  + +G ACC +E       R+D +RFG  PR
Sbjct: 20  QVTQELS-ENVILTTVDDLYNWARLSSLWPLLYGTACCFIEFAGLIGSRFDFDRFGLVPR 78

Query: 88  ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGC 146
           +SPRQ+D++I AGT+T K +  L R+Y+QMPEP+YVI+MG+C   GG +   S + VRG 
Sbjct: 79  SSPRQADLLITAGTITMKYSPMLVRLYEQMPEPKYVIAMGACTVTGGMFSMDSTTAVRGV 138

Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
           D+++PVD+Y+PGCPP  EA+I  I+ L+KKI
Sbjct: 139 DKLIPVDVYIPGCPPRPEAIIDAIIKLRKKI 169


>gi|156573611|gb|ABU85141.1| NADH-plastoquinone oxidoreductase subunit K [Yucca schidigera]
          Length = 239

 Score =  156 bits (395), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 70/149 (46%), Positives = 102/149 (68%), Gaps = 1/149 (0%)

Query: 32  EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPR 91
           + T    + T+ + L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPR
Sbjct: 25  QTTPNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPR 84

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIV 150
           Q+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++
Sbjct: 85  QADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLI 144

Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           PVD+Y+PGCPP  EA+I  I  L+KKI R
Sbjct: 145 PVDVYLPGCPPKPEAVIDAITKLRKKISR 173


>gi|147917399|gb|ABQ52523.1| NADH-plastoquinone oxidoreductase subunit K [Illicium oligandrum]
          Length = 283

 Score =  156 bits (395), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 69/147 (46%), Positives = 101/147 (68%), Gaps = 1/147 (0%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
           T    + T+ + L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPRQ+
Sbjct: 71  TQNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 130

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152
           D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++PV
Sbjct: 131 DIILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 190

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179
           D+Y+PGCPP  EA+I  I  L+KK+ R
Sbjct: 191 DVYLPGCPPKPEAIIDAITKLRKKLSR 217


>gi|154795257|ref|YP_784477.2| NADH-plastoquinone oxidoreductase subunit K [Piper cenocladum]
 gi|218527951|sp|Q06GQ6|NDHK_PIPCE RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
          Length = 229

 Score =  156 bits (395), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 68/147 (46%), Positives = 102/147 (69%), Gaps = 1/147 (0%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
           T    + T+++ L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPRQ+
Sbjct: 13  TQSSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 72

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152
           D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++PV
Sbjct: 73  DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 132

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179
           D+Y+PGCPP  EA++  I  L+KK+ R
Sbjct: 133 DVYLPGCPPKPEAILDAITKLRKKVSR 159


>gi|110456608|gb|ABG74735.1| NADH dehydrogenase 32 kDa subunit [Forsythia europaea]
          Length = 225

 Score =  156 bits (395), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 69/149 (46%), Positives = 102/149 (68%), Gaps = 1/149 (0%)

Query: 32  EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPR 91
           +      + T+++ L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPR
Sbjct: 11  QTVQNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPR 70

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIV 150
           Q+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++
Sbjct: 71  QADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLI 130

Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           PVD+Y+PGCPP  EA+I  I  L+KKI R
Sbjct: 131 PVDVYLPGCPPKPEAVIDAITKLRKKISR 159


>gi|290489726|gb|ADD31247.1| NADH-plastoquinone oxidoreductase subunit K protein [Bulnesia
           arborea]
          Length = 225

 Score =  156 bits (395), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 70/147 (47%), Positives = 101/147 (68%), Gaps = 1/147 (0%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
           T    + T+++    W+R  SL  + +G +CC +E       R+D +R+G  PR+SPRQ+
Sbjct: 13  TKNSVISTTLNDFSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 72

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152
           D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++PV
Sbjct: 73  DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 132

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179
           DIY+PGCPP  EA+I  I  L+KKI R
Sbjct: 133 DIYLPGCPPKPEAVIDAITKLRKKISR 159


>gi|290489736|gb|ADD31252.1| NADH-plastoquinone oxidoreductase subunit K protein [Heuchera
           sanguinea]
          Length = 255

 Score =  156 bits (395), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 70/147 (47%), Positives = 101/147 (68%), Gaps = 1/147 (0%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
           T    + T+ + L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPRQ+
Sbjct: 43  TQNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 102

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152
           D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++PV
Sbjct: 103 DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 162

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179
           D+Y+PGCPP  EA+I  I  L+KKI R
Sbjct: 163 DVYLPGCPPKPEAVIDAITKLRKKISR 189


>gi|218527963|sp|A9L9A0|NDHK_LEMMI RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
          Length = 225

 Score =  156 bits (395), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 69/140 (49%), Positives = 100/140 (71%), Gaps = 1/140 (0%)

Query: 41  TSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAG 100
           T+++ L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPRQ+D+++ AG
Sbjct: 20  TTLNDLSNWSRLSSLWPLLYGTSCCFIEFAALIGSRFDFDRYGLVPRSSPRQADLILTAG 79

Query: 101 TLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPVDIYVPGC 159
           T+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++PVD+Y+PGC
Sbjct: 80  TVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGC 139

Query: 160 PPTAEALIYGILLLQKKIRR 179
           PP  EA+I  I  L+KKI R
Sbjct: 140 PPKPEAVIDAITKLRKKISR 159


>gi|77463673|ref|YP_353177.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit [Rhodobacter
           sphaeroides 2.4.1]
 gi|221639516|ref|YP_002525778.1| NADH dehydrogenase subunit B [Rhodobacter sphaeroides KD131]
 gi|332558529|ref|ZP_08412851.1| NADH dehydrogenase subunit B [Rhodobacter sphaeroides WS8N]
 gi|123591710|sp|Q3J1Q8|NUOB2_RHOS4 RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName:
           Full=NADH dehydrogenase I subunit B 2; AltName:
           Full=NDH-1 subunit B 2
 gi|238065037|sp|B9KJI0|NUOB2_RHOSK RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName:
           Full=NADH dehydrogenase I subunit B 2; AltName:
           Full=NDH-1 subunit B 2
 gi|77388091|gb|ABA79276.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit [Rhodobacter
           sphaeroides 2.4.1]
 gi|221160297|gb|ACM01277.1| NADH-quinone oxidoreductase, B subunit [Rhodobacter sphaeroides
           KD131]
 gi|332276241|gb|EGJ21556.1| NADH dehydrogenase subunit B [Rhodobacter sphaeroides WS8N]
          Length = 205

 Score =  156 bits (395), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 83/163 (50%), Positives = 107/163 (65%), Gaps = 5/163 (3%)

Query: 16  SCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMP 75
           S ++ + DA+        +H   L T +D LV W+R  SL    FGL+CC VEM  A  P
Sbjct: 2   SWTIGRPDAEAPEDRMAASH---LFTRLDDLVAWSRKHSLWPFNFGLSCCYVEMATALTP 58

Query: 76  RYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGG 134
            YD  RFG    R++PRQ+D++IV+GT+  KMA  L R+Y QM EPR+VISMG+CAN GG
Sbjct: 59  VYDQARFGAEVIRSTPRQADLLIVSGTVFRKMAVPLYRLYSQMREPRWVISMGACANSGG 118

Query: 135 YYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
            Y   YSVV+G D  +PVD+YVPGCPP  EAL+  ++LLQ KI
Sbjct: 119 MYDI-YSVVQGVDSFLPVDVYVPGCPPRPEALMEALVLLQSKI 160


>gi|290489706|gb|ADD31237.1| NADH-plastoquinone oxidoreductase subunit K protein [Aucuba
           japonica]
          Length = 254

 Score =  156 bits (395), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 70/147 (47%), Positives = 102/147 (69%), Gaps = 1/147 (0%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
           T    + T+++ L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPRQ+
Sbjct: 42  TPNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 101

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152
           D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++PV
Sbjct: 102 DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 161

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179
           D+Y+PGCPP  EA+I  I  L+KKI R
Sbjct: 162 DVYLPGCPPKPEAVIDAITKLRKKISR 188


>gi|209525746|ref|ZP_03274282.1| NADH-quinone oxidoreductase, B subunit [Arthrospira maxima CS-328]
 gi|209493719|gb|EDZ94038.1| NADH-quinone oxidoreductase, B subunit [Arthrospira maxima CS-328]
          Length = 241

 Score =  156 bits (394), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 71/148 (47%), Positives = 102/148 (68%), Gaps = 1/148 (0%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP 90
           +E   +  ++T+VD L  WAR  SL  + +G ACC +E       R+D +RFG  PR+SP
Sbjct: 22  TEELSENVILTTVDDLYNWARLSSLWPLLYGTACCFIEFAGLIGSRFDFDRFGLVPRSSP 81

Query: 91  RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRI 149
           RQ+D++I AGT+T K +  L R+Y+QMPEP+YVI+MG+C   GG +   S + VRG D++
Sbjct: 82  RQADLLITAGTITMKYSPMLVRLYEQMPEPKYVIAMGACTVTGGMFSMDSPTAVRGVDKL 141

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKI 177
           +PVD+Y+PGCPP  EA+I  I+ L+KKI
Sbjct: 142 IPVDVYIPGCPPRPEAIIDAIIKLRKKI 169


>gi|290489724|gb|ADD31246.1| NADH-plastoquinone oxidoreductase subunit K protein [Berberidopsis
           corallina]
          Length = 285

 Score =  156 bits (394), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 70/147 (47%), Positives = 102/147 (69%), Gaps = 1/147 (0%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
           T    ++T+ + L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPRQ+
Sbjct: 73  TQNSAILTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 132

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152
           D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++PV
Sbjct: 133 DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 192

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179
           D+Y+PGCPP  EA+I  I  L+KKI R
Sbjct: 193 DVYLPGCPPKPEAVIDAITKLRKKISR 219


>gi|292559512|ref|YP_003540935.1| NADH-plastoquinone oxidoreductase subunit K [Phoenix dactylifera]
 gi|290790920|gb|ADD63175.1| NADH-plastoquinone oxidoreductase subunit K [Phoenix dactylifera]
 gi|294620581|gb|ADF28150.1| NADH-plastoquinone oxidoreductase subunit K [Phoenix dactylifera]
          Length = 255

 Score =  156 bits (394), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 69/149 (46%), Positives = 103/149 (69%), Gaps = 1/149 (0%)

Query: 32  EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPR 91
           + T    + T+ + L  W+R  SL  + +G +CC +E       R+D +R+G  P++SPR
Sbjct: 33  QTTPNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPKSSPR 92

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIV 150
           Q+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++
Sbjct: 93  QADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLI 152

Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           PVD+Y+PGCPP  EA+I  I+ L+KKI R
Sbjct: 153 PVDVYLPGCPPKPEAVIDAIMKLRKKISR 181


>gi|323148834|ref|YP_004221927.1| NADH-plastoquinone oxidoreductase subunit K [Erodium carvifolium]
 gi|316926298|gb|ADU58151.1| NADH-plastoquinone oxidoreductase subunit K [Erodium carvifolium]
          Length = 227

 Score =  156 bits (394), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 71/147 (48%), Positives = 101/147 (68%), Gaps = 1/147 (0%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
           T    L T+ + L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPRQ+
Sbjct: 13  TQNSVLSTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 72

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152
           D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++PV
Sbjct: 73  DLVLTAGTVTLKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 132

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179
           D+Y+PGCPP  EA+I  I  L+KKI R
Sbjct: 133 DVYLPGCPPKPEAVIDAITKLRKKISR 159


>gi|22298247|ref|NP_681494.1| NADH dehydrogenase subunit B [Thermosynechococcus elongatus BP-1]
 gi|81743557|sp|Q8DKZ4|NDHK_THEEB RecName: Full=NAD(P)H-quinone oxidoreductase subunit K; AltName:
           Full=NAD(P)H dehydrogenase I subunit K; AltName:
           Full=NDH-1 subunit K; Short=NDH-K
 gi|22294426|dbj|BAC08256.1| NADH dehydrogenase subunit [Thermosynechococcus elongatus BP-1]
          Length = 237

 Score =  156 bits (394), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 70/143 (48%), Positives = 101/143 (70%), Gaps = 1/143 (0%)

Query: 36  KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDV 95
           +  ++TS++ +  WAR  SL  + +G ACC +E       R+D +RFG  PR SPRQ+D+
Sbjct: 24  ENIILTSLNDVYDWARLSSLWPLMYGTACCFIEFAAMIGSRFDFDRFGLVPRNSPRQADL 83

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCA-NGGGYYHYSYSVVRGCDRIVPVDI 154
           +I +GT+T KMA AL R+Y+QMP P+YVI+MG+C   GG +   SYS VRG D+++PVD+
Sbjct: 84  IITSGTITMKMAPALVRLYEQMPSPKYVIAMGACTITGGMFSSDSYSAVRGVDKLIPVDV 143

Query: 155 YVPGCPPTAEALIYGILLLQKKI 177
           Y+PGCPP  EA++  I+ L+KKI
Sbjct: 144 YLPGCPPRPEAIMDAIVKLRKKI 166


>gi|11837|emb|CAA77357.1| NADH dehydrogenase 27kD subunit [Nicotiana tabacum]
 gi|77799566|dbj|BAE46655.1| NADH dehydrogenase 27kD subunit [Nicotiana sylvestris]
 gi|225205|prf||1211235AK bhpB gene
          Length = 284

 Score =  156 bits (394), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 70/147 (47%), Positives = 102/147 (69%), Gaps = 1/147 (0%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
           T    + T+++ L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPRQ+
Sbjct: 72  TQNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 131

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152
           D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++PV
Sbjct: 132 DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 191

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179
           D+Y+PGCPP  EA+I  I  L+KKI R
Sbjct: 192 DVYLPGCPPKPEAVIDAITKLRKKISR 218


>gi|66876443|gb|AAY58001.1| NdhK [Falkia repens]
          Length = 235

 Score =  156 bits (394), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 69/140 (49%), Positives = 100/140 (71%), Gaps = 1/140 (0%)

Query: 41  TSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAG 100
           T+++ L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPRQ+D+++ AG
Sbjct: 20  TTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAG 79

Query: 101 TLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPVDIYVPGC 159
           T+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++PVD+Y+PGC
Sbjct: 80  TVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGC 139

Query: 160 PPTAEALIYGILLLQKKIRR 179
           PP  EA+I  I  L+KKI R
Sbjct: 140 PPKPEAVIDAITKLRKKISR 159


>gi|154795229|ref|YP_001023705.2| NADH dehydrogenase subunit K [Angiopteris evecta]
          Length = 232

 Score =  156 bits (394), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 68/138 (49%), Positives = 99/138 (71%), Gaps = 1/138 (0%)

Query: 41  TSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAG 100
           T+++    WAR  SL  + +G +CC +E       R+D +R+G  PR+SPRQ+D++I AG
Sbjct: 20  TNLNDFSNWARLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLIITAG 79

Query: 101 TLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPVDIYVPGC 159
           T+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++PVD+Y+PGC
Sbjct: 80  TVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGIDKLIPVDVYLPGC 139

Query: 160 PPTAEALIYGILLLQKKI 177
           PP  EA+I  I+ L+KK+
Sbjct: 140 PPKPEAIIDAIIKLRKKV 157


>gi|126462505|ref|YP_001043619.1| NADH dehydrogenase subunit B [Rhodobacter sphaeroides ATCC 17029]
 gi|238065036|sp|A3PKI1|NUOB2_RHOS1 RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName:
           Full=NADH dehydrogenase I subunit B 2; AltName:
           Full=NDH-1 subunit B 2
 gi|126104169|gb|ABN76847.1| NADH-quinone oxidoreductase, B subunit [Rhodobacter sphaeroides
           ATCC 17029]
          Length = 205

 Score =  156 bits (394), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 83/163 (50%), Positives = 107/163 (65%), Gaps = 5/163 (3%)

Query: 16  SCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMP 75
           S ++ + DA+        +H   L T +D LV W+R  SL    FGL+CC VEM  A  P
Sbjct: 2   SWTIGRPDAEAPEDRMAASH---LFTRLDDLVAWSRKHSLWPFNFGLSCCYVEMATALTP 58

Query: 76  RYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGG 134
            YD  RFG    R++PRQ+D++IV+GT+  KMA  L R+Y QM EPR+VISMG+CAN GG
Sbjct: 59  VYDQARFGAEVIRSTPRQADLLIVSGTVFRKMAVPLYRLYSQMREPRWVISMGACANSGG 118

Query: 135 YYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
            Y   YSVV+G D  +PVD+YVPGCPP  EAL+  ++LLQ KI
Sbjct: 119 MYDI-YSVVQGVDSFLPVDVYVPGCPPRPEALMEALVLLQSKI 160


>gi|27904647|ref|NP_777773.1| NADH dehydrogenase subunit B [Buchnera aphidicola str. Bp
           (Baizongia pistaciae)]
 gi|38372478|sp|Q89AU5|NUOB_BUCBP RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|27904044|gb|AAO26878.1| NADH dehydrogenase I chain B [Buchnera aphidicola str. Bp
           (Baizongia pistaciae)]
          Length = 222

 Score =  156 bits (394), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 76/144 (52%), Positives = 99/144 (68%), Gaps = 2/144 (1%)

Query: 37  GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95
           G L   +  LV W R  SL    FGL+CC VEM+ +    +D+ RFG    RASPRQ+D 
Sbjct: 40  GTLSKVLHNLVNWGRKNSLWPYNFGLSCCYVEMVTSFTSVHDISRFGSEVLRASPRQADF 99

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
           M++AGT   KM   ++R+YDQM EP++VISMGSCAN GG Y   YSVV+G D+ +PVD+Y
Sbjct: 100 MVIAGTPFIKMVPIIQRLYDQMLEPKWVISMGSCANSGGMYDI-YSVVQGVDKFLPVDVY 158

Query: 156 VPGCPPTAEALIYGILLLQKKIRR 179
           +PGCPP  EA I+G++LLQK I +
Sbjct: 159 IPGCPPRPEAYIHGLMLLQKSISK 182


>gi|317046177|ref|YP_004072466.1| NADH dehydrogenase 32 kDa subunit [Corynocarpus laevigata]
 gi|309252894|gb|ADO60314.1| NADH dehydrogenase 32 kDa subunit [Corynocarpus laevigata]
          Length = 226

 Score =  156 bits (394), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 70/147 (47%), Positives = 101/147 (68%), Gaps = 1/147 (0%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
           T    + T+ + L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPRQ+
Sbjct: 13  TQTSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 72

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152
           D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++PV
Sbjct: 73  DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 132

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179
           D+Y+PGCPP  EA+I  I  L+KKI R
Sbjct: 133 DVYLPGCPPKPEAVIDAITKLRKKISR 159


>gi|289066814|ref|YP_003434332.1| NADH-plastoquinone oxidoreductase subunit K [Vigna radiata]
 gi|259020001|gb|ACV90199.1| NADH-plastoquinone oxidoreductase subunit K [Vigna radiata]
          Length = 212

 Score =  156 bits (394), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 69/149 (46%), Positives = 102/149 (68%), Gaps = 1/149 (0%)

Query: 32  EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPR 91
           + T    + T+++    W+R  SL  + +G +CC +E       R+D +R+G  PR+SPR
Sbjct: 11  QTTKNSVISTTLNDFSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPR 70

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIV 150
           Q+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++
Sbjct: 71  QADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLI 130

Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           PVD+Y+PGCPP  EA+I  I  L+KKI R
Sbjct: 131 PVDVYLPGCPPKPEAIIDAITKLRKKISR 159


>gi|154795256|ref|YP_784390.2| NADH-plastoquinone oxidoreductase subunit K [Drimys granadensis]
 gi|218527894|sp|Q06GZ3|NDHK_DRIGR RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
          Length = 227

 Score =  156 bits (394), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 69/147 (46%), Positives = 101/147 (68%), Gaps = 1/147 (0%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
           T    + T+ + L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPRQ+
Sbjct: 13  TQNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 72

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152
           D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++PV
Sbjct: 73  DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 132

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179
           D+Y+PGCPP  EA+I  I  L+KK+ R
Sbjct: 133 DVYLPGCPPKPEAVIDAITKLRKKVSR 159


>gi|13518424|ref|NP_084784.1| NADH dehydrogenase subunit K [Lotus japonicus]
 gi|18202728|sp|Q9BBT7|NDHK_LOTJA RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
 gi|13358965|dbj|BAB33182.1| photosystem II G protein [Lotus japonicus]
          Length = 230

 Score =  156 bits (394), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 68/147 (46%), Positives = 102/147 (69%), Gaps = 1/147 (0%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
           T    + T+++ L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPRQ+
Sbjct: 13  TQNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 72

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152
           D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++PV
Sbjct: 73  DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 132

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179
           D+Y+PGCPP  E+++  I  L+KKI R
Sbjct: 133 DVYLPGCPPKPESILDAITKLRKKISR 159


>gi|42795491|gb|AAS46058.1| NADH dehydrogenase subunit K [Oryza sativa Indica Group]
 gi|42795558|gb|AAS46124.1| NADH dehydrogenase subunit K [Oryza sativa Japonica Group]
 gi|42795622|gb|AAS46187.1| NADH dehydrogenase subunit K [Oryza sativa Japonica Group]
 gi|290790577|gb|ADD62837.1| NADH-plastoquinone oxidoreductase subunit K [Oryza sativa Japonica
           Group]
 gi|290790646|gb|ADD62905.1| NADH-plastoquinone oxidoreductase subunit K [Oryza meridionalis]
 gi|290790715|gb|ADD62973.1| NADH-plastoquinone oxidoreductase subunit K [Oryza australiensis]
          Length = 253

 Score =  156 bits (394), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 68/149 (45%), Positives = 102/149 (68%), Gaps = 1/149 (0%)

Query: 32  EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPR 91
           + +    + T++  L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPR
Sbjct: 39  QTSSNSVISTTLKDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPR 98

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIV 150
           Q+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++
Sbjct: 99  QADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLI 158

Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           PVD+Y+PGCPP  EA+I  +  L+KKI R
Sbjct: 159 PVDVYLPGCPPKPEAVIDALTKLRKKISR 187


>gi|218527893|sp|Q85XC3|NDHK_HORVU RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
          Length = 225

 Score =  156 bits (394), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 68/149 (45%), Positives = 103/149 (69%), Gaps = 1/149 (0%)

Query: 32  EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPR 91
           + +    + T+++ L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPR
Sbjct: 11  QTSSNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPR 70

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIV 150
           Q+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++
Sbjct: 71  QADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLI 130

Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           PVD+Y+PGCPP  EA+I  +  L+KKI R
Sbjct: 131 PVDVYLPGCPPKPEAVIDALTKLRKKISR 159


>gi|218527959|sp|Q09X13|NDHK_MORIN RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
          Length = 226

 Score =  156 bits (394), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 70/147 (47%), Positives = 100/147 (68%), Gaps = 1/147 (0%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
           T    + T+   L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPRQ+
Sbjct: 14  TQNSVISTTSSDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 73

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152
           D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++PV
Sbjct: 74  DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 133

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179
           D+Y+PGCPP  EA+I  I  L+KKI R
Sbjct: 134 DVYLPGCPPKPEAVIDAITKLRKKISR 160


>gi|197131356|gb|ACH47196.1| NADH-plastoquinone oxidoreductase subunit K [Geranium macrorrhizum]
          Length = 217

 Score =  156 bits (394), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 71/147 (48%), Positives = 101/147 (68%), Gaps = 1/147 (0%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
           T    L T+ + L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPRQ+
Sbjct: 13  TQNSVLSTTPNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 72

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152
           D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++PV
Sbjct: 73  DLVLTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 132

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179
           D+Y+PGCPP  EA+I  I  L+KKI R
Sbjct: 133 DVYLPGCPPKPEAVIDAITKLRKKISR 159


>gi|225164240|ref|ZP_03726513.1| NADH dehydrogenase (quinone) [Opitutaceae bacterium TAV2]
 gi|224801145|gb|EEG19468.1| NADH dehydrogenase (quinone) [Opitutaceae bacterium TAV2]
          Length = 178

 Score =  156 bits (394), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 71/142 (50%), Positives = 104/142 (73%), Gaps = 2/142 (1%)

Query: 39  LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMI 97
           ++++ D ++ W R+ S+  M  GLACC +E+M     R+D+ RFG    R SPRQ D MI
Sbjct: 19  VISTADAVINWIRSNSIWPMPMGLACCGIELMGVGGARFDISRFGAEVMRFSPRQCDCMI 78

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGT+T KMAS +RR+YDQM EP++VI+MG+CA+ GG Y  SY+ ++G DRI+PVD+Y+ 
Sbjct: 79  VAGTVTYKMASHVRRIYDQMAEPKWVIAMGACASSGGMYR-SYATLQGVDRIIPVDVYIS 137

Query: 158 GCPPTAEALIYGILLLQKKIRR 179
           GCPP  EA++  ++ +Q+KI+R
Sbjct: 138 GCPPRPEAVLDALVKMQEKIKR 159


>gi|91701654|gb|ABE47538.1| NADH-plastoquinone oxidoreductase subunit K [Vitis vinifera]
 gi|147769052|emb|CAN63542.1| hypothetical protein VITISV_025533 [Vitis vinifera]
          Length = 283

 Score =  156 bits (394), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 70/147 (47%), Positives = 101/147 (68%), Gaps = 1/147 (0%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
           T    + T+ + L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPRQ+
Sbjct: 71  TQNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 130

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152
           D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++PV
Sbjct: 131 DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 190

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179
           D+Y+PGCPP  EA+I  I  L+KKI R
Sbjct: 191 DVYLPGCPPKPEAVIDAITKLRKKISR 217


>gi|49614999|dbj|BAD26782.1| NADH dehydrogenase subunit K [Oryza nivara]
          Length = 246

 Score =  156 bits (394), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 68/149 (45%), Positives = 102/149 (68%), Gaps = 1/149 (0%)

Query: 32  EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPR 91
           + +    + T++  L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPR
Sbjct: 32  QTSSNSVISTTLKDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPR 91

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIV 150
           Q+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++
Sbjct: 92  QADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLI 151

Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           PVD+Y+PGCPP  EA+I  +  L+KKI R
Sbjct: 152 PVDVYLPGCPPKPEAVIDALTKLRKKISR 180


>gi|313183927|ref|YP_004021781.1| NADH-plastoquinone oxidoreductase subunit K [Equisetum arvense]
 gi|281371647|gb|ADA63580.1| NADH-plastoquinone oxidoreductase subunit K [Equisetum arvense]
          Length = 250

 Score =  156 bits (394), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 72/176 (40%), Positives = 115/176 (65%), Gaps = 8/176 (4%)

Query: 6   VNQKIISGQSSCSLE-KVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLAC 64
           +N  II  +   S+E  +D++ + +         ++T++     WAR  SL  + +G +C
Sbjct: 10  LNPSIIHEKIRFSMEPSIDSNTNELD------AIILTNLKDFSNWARLSSLWPLLYGTSC 63

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E       R+D +R+G  PR+SPRQ+D++I AGT+T KMA +L R+Y+QMPEP+YVI
Sbjct: 64  CFIEFASLIGSRFDFDRYGLVPRSSPRQADLLITAGTVTMKMAPSLVRLYEQMPEPKYVI 123

Query: 125 SMGSCANGGGYYHY-SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           +MG+C   GG +   SYS VRG D+++PV++Y+PGCPP  EA+I  ++ L+K++ R
Sbjct: 124 AMGACTITGGMFSTDSYSTVRGVDKLIPVNVYLPGCPPKPEAIIDAVVKLRKEVAR 179


>gi|126165891|ref|NP_783236.2| NADH dehydrogenase subunit K [Atropa belladonna]
          Length = 247

 Score =  156 bits (394), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 69/146 (47%), Positives = 101/146 (69%), Gaps = 1/146 (0%)

Query: 35  HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSD 94
               + T+++ L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPRQ+D
Sbjct: 36  QNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQAD 95

Query: 95  VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPVD 153
           +++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++PVD
Sbjct: 96  LILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVD 155

Query: 154 IYVPGCPPTAEALIYGILLLQKKIRR 179
           +Y+PGCPP  EA+I  I  L+KKI R
Sbjct: 156 VYLPGCPPKPEAVIDAITKLRKKISR 181


>gi|290489704|gb|ADD31236.1| NADH-plastoquinone oxidoreductase subunit K protein [Antirrhinum
           majus]
          Length = 254

 Score =  155 bits (393), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 69/140 (49%), Positives = 100/140 (71%), Gaps = 1/140 (0%)

Query: 41  TSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAG 100
           T+++ L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPRQ+D+++ AG
Sbjct: 49  TTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAG 108

Query: 101 TLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPVDIYVPGC 159
           T+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++PVD+Y+PGC
Sbjct: 109 TVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGC 168

Query: 160 PPTAEALIYGILLLQKKIRR 179
           PP  EA+I  I  L+KKI R
Sbjct: 169 PPKPEAVIDAITKLRKKISR 188


>gi|154795222|ref|YP_319769.3| NADH dehydrogenase subunit K [Acorus calamus]
 gi|161622314|ref|YP_001586186.1| NADH dehydrogenase subunit K [Acorus americanus]
 gi|218527878|sp|A9LYA5|NDHK_ACOAM RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
 gi|218527908|sp|Q3V530|NDHK_ACOCL RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
 gi|160369857|gb|ABX38748.1| NADH-plastoquinone oxidoreductase subunit K [Acorus americanus]
          Length = 239

 Score =  155 bits (393), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 69/147 (46%), Positives = 102/147 (69%), Gaps = 1/147 (0%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
           T    + T+++ L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPRQ+
Sbjct: 13  TPNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 72

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152
           D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++PV
Sbjct: 73  DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 132

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179
           D+Y+PGCPP  EA+I  I  L+KK+ R
Sbjct: 133 DVYLPGCPPKPEAVIDAITKLRKKLSR 159


>gi|126165918|ref|YP_398867.2| NADH dehydrogenase subunit K [Nicotiana tomentosiformis]
          Length = 247

 Score =  155 bits (393), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 69/140 (49%), Positives = 100/140 (71%), Gaps = 1/140 (0%)

Query: 41  TSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAG 100
           T+++ L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPRQ+D+++ AG
Sbjct: 42  TTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAG 101

Query: 101 TLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPVDIYVPGC 159
           T+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++PVD+Y+PGC
Sbjct: 102 TVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGC 161

Query: 160 PPTAEALIYGILLLQKKIRR 179
           PP  EA+I  I  L+KKI R
Sbjct: 162 PPKPEAVIDAITKLRKKISR 181


>gi|309322102|ref|YP_003933918.1| NADH-plastoquinone oxidoreductase subunit K [Erodium texanum]
 gi|197131352|gb|ACH47194.1| NADH-plastoquinone oxidoreductase subunit K [Erodium texanum]
 gi|300069195|gb|ADJ66317.1| NADH-plastoquinone oxidoreductase subunit K [Erodium texanum]
          Length = 227

 Score =  155 bits (393), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 72/150 (48%), Positives = 101/150 (67%), Gaps = 1/150 (0%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
           T    L T+   L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPRQ+
Sbjct: 13  TQNSVLSTTSKDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 72

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152
           D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++PV
Sbjct: 73  DLVLTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 132

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
           D+Y+PGCPP  EA+I  I  L+KKI R  N
Sbjct: 133 DVYLPGCPPKPEAVIDAITKLRKKISREIN 162


>gi|295065732|ref|YP_003587672.1| NADH dehydrogenase subunit K [Anomochloa marantoidea]
 gi|251765256|gb|ACT15410.1| NADH dehydrogenase subunit K [Anomochloa marantoidea]
          Length = 222

 Score =  155 bits (393), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 69/149 (46%), Positives = 102/149 (68%), Gaps = 1/149 (0%)

Query: 32  EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPR 91
           + T    + T+ + L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPR
Sbjct: 11  QTTSNSVISTTPNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPR 70

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIV 150
           Q+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++
Sbjct: 71  QADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLI 130

Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           PVD+Y+PGCPP  EA+I  +  L+KKI R
Sbjct: 131 PVDVYLPGCPPKPEAVIDALTKLRKKISR 159


>gi|290489718|gb|ADD31243.1| NADH-plastoquinone oxidoreductase subunit K protein [Nelumbo
           nucifera]
          Length = 285

 Score =  155 bits (393), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 69/147 (46%), Positives = 102/147 (69%), Gaps = 1/147 (0%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
           T    + T+++ L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPRQ+
Sbjct: 73  TQNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 132

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152
           D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++PV
Sbjct: 133 DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 192

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179
           D+Y+PGCPP  EA+I  I  L+KK+ R
Sbjct: 193 DVYLPGCPPKPEAVIDAITKLRKKVSR 219


>gi|218527958|sp|Q33C30|NDHK_NICTO RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
          Length = 225

 Score =  155 bits (393), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 69/140 (49%), Positives = 100/140 (71%), Gaps = 1/140 (0%)

Query: 41  TSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAG 100
           T+++ L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPRQ+D+++ AG
Sbjct: 20  TTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAG 79

Query: 101 TLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPVDIYVPGC 159
           T+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++PVD+Y+PGC
Sbjct: 80  TVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGC 139

Query: 160 PPTAEALIYGILLLQKKIRR 179
           PP  EA+I  I  L+KKI R
Sbjct: 140 PPKPEAVIDAITKLRKKISR 159


>gi|115531919|ref|YP_784075.1| NADH-plastoquinone oxidoreductase subunit K [Pelargonium x
           hortorum]
 gi|122164275|sp|Q06FV6|NDHK_PELHO RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
 gi|112382073|gb|ABI17266.1| NADH-plastoquinone oxidoreductase subunit K [Pelargonium x
           hortorum]
          Length = 227

 Score =  155 bits (393), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 70/147 (47%), Positives = 101/147 (68%), Gaps = 1/147 (0%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
           T    + T+ + L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPRQ+
Sbjct: 13  TKNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 72

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152
           D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++PV
Sbjct: 73  DLVLTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 132

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179
           D+Y+PGCPP  EA+I  I  L+KKI R
Sbjct: 133 DVYLPGCPPKPEAVIDAITKLRKKISR 159


>gi|110456747|gb|ABG74842.1| NADH dehydrogenase 32 kDa subunit [Menodora longiflora]
          Length = 213

 Score =  155 bits (393), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 69/140 (49%), Positives = 100/140 (71%), Gaps = 1/140 (0%)

Query: 41  TSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAG 100
           T+++ L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPRQ+D+++ AG
Sbjct: 20  TTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAG 79

Query: 101 TLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPVDIYVPGC 159
           T+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++PVD+Y+PGC
Sbjct: 80  TVTMKMAPSLMRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGC 139

Query: 160 PPTAEALIYGILLLQKKIRR 179
           PP  EA+I  I  L+KKI R
Sbjct: 140 PPKPEAVIDAITKLRKKISR 159


>gi|89280639|ref|YP_514856.1| NADH dehydrogenase subunit K [Solanum lycopersicum]
 gi|91208992|ref|YP_538852.1| NADH dehydrogenase subunit K [Solanum bulbocastanum]
 gi|108773134|ref|YP_635643.1| NADH dehydrogenase subunit K [Solanum tuberosum]
 gi|84371899|gb|ABC56217.1| NADH-plastoquinone oxidoreductase subunit K [Solanum bulbocastanum]
 gi|84371987|gb|ABC56304.1| NADH-plastoquinone oxidoreductase subunit K [Solanum lycopersicum]
 gi|88656808|gb|ABD47061.1| NADH-plastoquinone oxidoreductase subunit K [Solanum tuberosum]
 gi|89241675|emb|CAJ32397.1| NADH dehydrogenase subunit K [Solanum lycopersicum]
          Length = 284

 Score =  155 bits (393), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 70/140 (50%), Positives = 100/140 (71%), Gaps = 1/140 (0%)

Query: 41  TSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAG 100
           T+++ L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPRQSD+++ AG
Sbjct: 79  TTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQSDLILTAG 138

Query: 101 TLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPVDIYVPGC 159
           T+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++PVD+Y+PGC
Sbjct: 139 TVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGC 198

Query: 160 PPTAEALIYGILLLQKKIRR 179
           PP  EA+I  I  L+KKI R
Sbjct: 199 PPKPEAVIDAITKLRKKISR 218


>gi|313183826|ref|YP_004021669.1| NADH-plastoquinone oxidoreductase subunit K [Prunus persica]
 gi|309321438|gb|ADO64979.1| NADH-plastoquinone oxidoreductase subunit K [Prunus persica]
          Length = 226

 Score =  155 bits (393), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 70/147 (47%), Positives = 100/147 (68%), Gaps = 1/147 (0%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
           T    + T+   L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPRQ+
Sbjct: 14  TQNSVISTTSSDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 73

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152
           D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++PV
Sbjct: 74  DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 133

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179
           D+Y+PGCPP  EA+I  I  L+KKI R
Sbjct: 134 DVYLPGCPPKPEAVIDAITKLRKKISR 160


>gi|326200285|gb|ADZ52324.1| NADH dehydrogenase 32 kDa subunit [Asclepias syriaca]
          Length = 227

 Score =  155 bits (393), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 69/140 (49%), Positives = 100/140 (71%), Gaps = 1/140 (0%)

Query: 41  TSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAG 100
           T+++ L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPRQ+D+++ AG
Sbjct: 20  TTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAG 79

Query: 101 TLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPVDIYVPGC 159
           T+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++PVD+Y+PGC
Sbjct: 80  TVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGC 139

Query: 160 PPTAEALIYGILLLQKKIRR 179
           PP  EA+I  I  L+KKI R
Sbjct: 140 PPKPEAVIDAITKLRKKISR 159


>gi|218512130|sp|P06670|NDHK_MAIZE RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
          Length = 227

 Score =  155 bits (393), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 68/149 (45%), Positives = 103/149 (69%), Gaps = 1/149 (0%)

Query: 32  EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPR 91
           + +    + T+++ L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPR
Sbjct: 11  QTSSNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPR 70

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIV 150
           Q+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++
Sbjct: 71  QADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLI 130

Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           PVD+Y+PGCPP  EA+I  +  L+KKI R
Sbjct: 131 PVDVYLPGCPPKPEAVIDALTKLRKKIAR 159


>gi|197131364|gb|ACH47200.1| NADH-plastoquinone oxidoreductase subunit K [Pelargonium
           cotyledonis]
          Length = 227

 Score =  155 bits (393), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 70/147 (47%), Positives = 101/147 (68%), Gaps = 1/147 (0%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
           T    + T+ + L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPRQ+
Sbjct: 13  TKNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 72

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152
           D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++PV
Sbjct: 73  DLVLTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 132

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179
           D+Y+PGCPP  EA+I  I  L+KKI R
Sbjct: 133 DVYLPGCPPKPEAVIDAITKLRKKISR 159


>gi|218527902|sp|Q8S8X1|NDHK_ATRBE RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
          Length = 225

 Score =  155 bits (393), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 69/146 (47%), Positives = 101/146 (69%), Gaps = 1/146 (0%)

Query: 35  HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSD 94
               + T+++ L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPRQ+D
Sbjct: 14  QNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQAD 73

Query: 95  VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPVD 153
           +++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++PVD
Sbjct: 74  LILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVD 133

Query: 154 IYVPGCPPTAEALIYGILLLQKKIRR 179
           +Y+PGCPP  EA+I  I  L+KKI R
Sbjct: 134 VYLPGCPPKPEAVIDAITKLRKKISR 159


>gi|115391908|ref|YP_778496.1| NADH dehydrogenase subunit K [Jasminum nudiflorum]
 gi|122164967|sp|Q06RC5|NDHK_JASNU RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
 gi|110456229|gb|ABG74634.1| NADH dehydrogenase 32 kDa subunit [Jasminum nudiflorum]
 gi|110456646|gb|ABG74765.1| NADH dehydrogenase 32 kDa subunit [Jasminum leratii]
 gi|110456683|gb|ABG74792.1| NADH dehydrogenase 32 kDa subunit [Jasminum abyssinicum]
 gi|110456715|gb|ABG74818.1| NADH dehydrogenase 32 kDa subunit [Jasminum subhumile]
          Length = 213

 Score =  155 bits (393), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 69/149 (46%), Positives = 101/149 (67%), Gaps = 1/149 (0%)

Query: 32  EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPR 91
           +        T+++ L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPR
Sbjct: 11  QTVQNSVFSTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPR 70

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIV 150
           Q+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++
Sbjct: 71  QADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLI 130

Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           PVD+Y+PGCPP  EA+I  I  L+KKI R
Sbjct: 131 PVDVYLPGCPPKPEAVIDAITKLRKKISR 159


>gi|258514491|ref|YP_003190713.1| NADH-quinone oxidoreductase, B subunit [Desulfotomaculum
           acetoxidans DSM 771]
 gi|257778196|gb|ACV62090.1| NADH-quinone oxidoreductase, B subunit [Desulfotomaculum
           acetoxidans DSM 771]
          Length = 175

 Score =  155 bits (393), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 74/140 (52%), Positives = 105/140 (75%), Gaps = 2/140 (1%)

Query: 40  VTSVDQLVTWARTGSLMWMTFGLACCAVE-MMQASMPRYDLERFGF-APRASPRQSDVMI 97
           +  +++++  AR  S+  M FGLACCA+E +M A+ PRYDL RFG+   R SPRQ+DVM+
Sbjct: 28  IGPLEKILNLARAHSMWPMAFGLACCAIEALMGATGPRYDLARFGYEVLRPSPRQADVMV 87

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGT+T K A  + R+Y+QMP+P++VI++GSCA  GG +  SY VV G D+++PVD+YVP
Sbjct: 88  VAGTITRKSAPFVVRLYEQMPDPKWVIAVGSCAISGGPFVDSYYVVPGADKLIPVDVYVP 147

Query: 158 GCPPTAEALIYGILLLQKKI 177
           GCPP  EA+I G ++L+ KI
Sbjct: 148 GCPPRPEAVIDGFIMLKNKI 167


>gi|11988|emb|CAA34000.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|226609|prf||1603356AF photosystem II G protein
          Length = 246

 Score =  155 bits (393), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 68/140 (48%), Positives = 99/140 (70%), Gaps = 1/140 (0%)

Query: 41  TSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAG 100
           T++  L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPRQ+D+++ AG
Sbjct: 41  TTLKDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAG 100

Query: 101 TLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPVDIYVPGC 159
           T+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++PVD+Y+PGC
Sbjct: 101 TVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGC 160

Query: 160 PPTAEALIYGILLLQKKIRR 179
           PP  EA+I  +  L+KKI R
Sbjct: 161 PPKPEAVIDALTKLRKKISR 180


>gi|325126869|ref|YP_004286106.1| NADH-plastoquinone oxidoreductase subunit K [Fragaria vesca subsp.
           vesca]
 gi|324022781|gb|ADY15355.1| NADH-plastoquinone oxidoreductase subunit K [Fragaria vesca subsp.
           vesca]
          Length = 226

 Score =  155 bits (393), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 70/147 (47%), Positives = 100/147 (68%), Gaps = 1/147 (0%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
           T    + T+   L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPRQ+
Sbjct: 14  TQNSVISTTSSDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 73

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152
           D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++PV
Sbjct: 74  DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 133

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179
           D+Y+PGCPP  EA+I  I  L+KKI R
Sbjct: 134 DVYLPGCPPKPEAVIDAITKLRKKISR 160


>gi|112253755|gb|ABI14476.1| NADH-plastoquinone oxidoreductase subunit K [Piper cenocladum]
          Length = 289

 Score =  155 bits (393), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 68/147 (46%), Positives = 102/147 (69%), Gaps = 1/147 (0%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
           T    + T+++ L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPRQ+
Sbjct: 73  TQSSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 132

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152
           D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++PV
Sbjct: 133 DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 192

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179
           D+Y+PGCPP  EA++  I  L+KK+ R
Sbjct: 193 DVYLPGCPPKPEAILDAITKLRKKVSR 219


>gi|298373133|ref|ZP_06983123.1| NADH dehydrogenase I, B subunit [Bacteroidetes oral taxon 274 str.
           F0058]
 gi|298276037|gb|EFI17588.1| NADH dehydrogenase I, B subunit [Bacteroidetes oral taxon 274 str.
           F0058]
          Length = 204

 Score =  155 bits (393), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 67/140 (47%), Positives = 96/140 (68%), Gaps = 1/140 (0%)

Query: 40  VTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APRASPRQSDVMIV 98
           +  +D ++ W R+ S+  +TF  +CC +E M     R+D  RFG+   R SPRQ+DV+  
Sbjct: 38  IAKLDDIINWGRSNSVWPLTFATSCCGIEFMSLGAARFDFSRFGWEVTRNSPRQADVVFC 97

Query: 99  AGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPG 158
            GT+ +KMA  L+R+YDQM EP+YVI++G CA  GG +  SY  V G D+I+PVD+YVPG
Sbjct: 98  FGTIVHKMAPVLKRLYDQMSEPKYVIAVGGCAISGGPFKKSYHTVMGIDQIIPVDVYVPG 157

Query: 159 CPPTAEALIYGILLLQKKIR 178
           CPP+  A+IYG+L L +KI+
Sbjct: 158 CPPSPNAIIYGMLQLSRKIK 177


>gi|169794077|ref|YP_001718441.1| NADH dehydrogenase subunit K [Manihot esculenta]
 gi|326909397|ref|YP_004327666.1| NADH dehydrogenase subunit K [Hevea brasiliensis]
 gi|218527912|sp|B1NWF4|NDHK_MANES RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
 gi|157695889|gb|ABV66158.1| NADH-plastoquinone oxidoreductase subunit K [Manihot esculenta]
 gi|308523511|gb|ADO33561.1| NADH dehydrogenase subunit K [Hevea brasiliensis]
          Length = 225

 Score =  155 bits (393), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 70/147 (47%), Positives = 101/147 (68%), Gaps = 1/147 (0%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
           T    + T+ + L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPRQ+
Sbjct: 13  TQISVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 72

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152
           D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++PV
Sbjct: 73  DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 132

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179
           D+Y+PGCPP  EA+I  I  L+KKI R
Sbjct: 133 DVYLPGCPPKPEAVIDAITKLRKKISR 159


>gi|113200998|gb|ABI32513.1| NADH-plastoquinone oxidoreductase subunit K [Liriodendron
           tulipifera]
          Length = 285

 Score =  155 bits (392), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 69/147 (46%), Positives = 101/147 (68%), Gaps = 1/147 (0%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
           T    + T+ + L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPRQ+
Sbjct: 73  TQNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 132

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152
           D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++PV
Sbjct: 133 DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 192

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179
           D+Y+PGCPP  EA+I  I  L+KK+ R
Sbjct: 193 DVYLPGCPPKPEAVIDAITKLRKKVSR 219


>gi|154795221|ref|YP_740569.2| NADH-plastoquinone oxidoreductase subunit K [Platanus occidentalis]
 gi|218527952|sp|Q09G42|NDHK_PLAOC RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
          Length = 225

 Score =  155 bits (392), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 69/147 (46%), Positives = 101/147 (68%), Gaps = 1/147 (0%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
           T    + T+ + L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPRQ+
Sbjct: 13  TQNSVISTTPNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 72

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152
           D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++PV
Sbjct: 73  DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 132

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179
           D+Y+PGCPP  EA+I  I  L+KK+ R
Sbjct: 133 DVYLPGCPPKPEAVIDAITKLRKKVSR 159


>gi|290790784|gb|ADD63041.1| NADH-plastoquinone oxidoreductase subunit K [Potamophila
           parviflora]
          Length = 253

 Score =  155 bits (392), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 68/149 (45%), Positives = 102/149 (68%), Gaps = 1/149 (0%)

Query: 32  EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPR 91
           + +    + T+ + L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPR
Sbjct: 39  QTSSNSVISTTPNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPR 98

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIV 150
           Q+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++
Sbjct: 99  QADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLI 158

Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           PVD+Y+PGCPP  EA+I  +  L+KKI R
Sbjct: 159 PVDVYLPGCPPKPEAVIDALTKLRKKISR 187


>gi|84682208|gb|ABC60462.1| NADH-plastoquinone oxidoreductase subunit K [Nuphar advena]
          Length = 283

 Score =  155 bits (392), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 69/147 (46%), Positives = 102/147 (69%), Gaps = 1/147 (0%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
           T    + T+++ L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPRQ+
Sbjct: 71  TPNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 130

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152
           D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++PV
Sbjct: 131 DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 190

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179
           D+Y+PGCPP  EA+I  I  L+KK+ R
Sbjct: 191 DVYLPGCPPKPEAIIDAITKLRKKVSR 217


>gi|82754631|gb|ABB90045.1| NADH dehydrogenase subunit K [Solanum tuberosum]
          Length = 284

 Score =  155 bits (392), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 70/140 (50%), Positives = 100/140 (71%), Gaps = 1/140 (0%)

Query: 41  TSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAG 100
           T+++ L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPRQSD+++ AG
Sbjct: 79  TTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQSDLILTAG 138

Query: 101 TLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPVDIYVPGC 159
           T+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++PVD+Y+PGC
Sbjct: 139 TVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGC 198

Query: 160 PPTAEALIYGILLLQKKIRR 179
           PP  EA+I  I  L+KKI R
Sbjct: 199 PPKPEAVIDAITKLRKKISR 218


>gi|154795223|ref|YP_052753.2| NADH dehydrogenase subunit K [Oryza nivara]
 gi|154795235|ref|YP_654218.2| NADH dehydrogenase subunit K [Oryza sativa Indica Group]
 gi|218511705|sp|Q6ENH0|NDHK_ORYNI RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
 gi|218511706|sp|P0C341|NDHK_ORYSA RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
 gi|218511707|sp|P0C342|NDHK_ORYSI RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
 gi|218511708|sp|P0C343|NDHK_ORYSJ RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
 gi|20146751|gb|AAM12487.1|AC074232_14 PSII G protein 5'-partial [Oryza sativa Japonica Group]
          Length = 225

 Score =  155 bits (392), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 68/149 (45%), Positives = 102/149 (68%), Gaps = 1/149 (0%)

Query: 32  EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPR 91
           + +    + T++  L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPR
Sbjct: 11  QTSSNSVISTTLKDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPR 70

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIV 150
           Q+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++
Sbjct: 71  QADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLI 130

Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           PVD+Y+PGCPP  EA+I  +  L+KKI R
Sbjct: 131 PVDVYLPGCPPKPEAVIDALTKLRKKISR 159


>gi|290489710|gb|ADD31239.1| NADH-plastoquinone oxidoreductase subunit K protein [Ehretia
           acuminata]
          Length = 284

 Score =  155 bits (392), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 70/147 (47%), Positives = 102/147 (69%), Gaps = 1/147 (0%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
           T    + T+++ L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPRQ+
Sbjct: 72  TPNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 131

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152
           D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++PV
Sbjct: 132 DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 191

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179
           D+Y+PGCPP  EA+I  I  L+KKI R
Sbjct: 192 DVYLPGCPPKPEAVIDAITKLRKKISR 218


>gi|149941520|dbj|BAF64944.1| NADH dehydrogenase subunit K [Cycas taitungensis]
 gi|156598045|gb|ABU85288.1| NADH-plastoquinone oxidoreductase subunit K [Cycas micronesica]
          Length = 319

 Score =  155 bits (392), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 70/149 (46%), Positives = 103/149 (69%), Gaps = 1/149 (0%)

Query: 32  EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPR 91
           + T    + T+++ L  WAR  SL  + +G +CC +E       R+D +R+G  PR+SPR
Sbjct: 69  QTTPNSVISTTLNDLSNWARLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPR 128

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIV 150
           Q+D++I AGT+T KMA +L R+Y+QMP P+YVI+MG+C   GG +   SYS VRG D+++
Sbjct: 129 QADLIITAGTVTMKMAPSLVRLYEQMPGPKYVIAMGACTITGGMFSTDSYSTVRGVDKLI 188

Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           PVD+Y+PGCPP  EA+I  I+ L+KK+ R
Sbjct: 189 PVDVYLPGCPPKPEAIIDAIIKLRKKVAR 217


>gi|146277729|ref|YP_001167888.1| NADH dehydrogenase subunit B [Rhodobacter sphaeroides ATCC 17025]
 gi|238065015|sp|A4WT69|NUOB1_RHOS5 RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName:
           Full=NADH dehydrogenase I subunit B 1; AltName:
           Full=NDH-1 subunit B 1
 gi|145555970|gb|ABP70583.1| NADH-quinone oxidoreductase, B subunit [Rhodobacter sphaeroides
           ATCC 17025]
          Length = 205

 Score =  155 bits (392), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 79/140 (56%), Positives = 98/140 (70%), Gaps = 2/140 (1%)

Query: 39  LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMI 97
           L T +D LV W+R  SL    FGL+CC VEM  A  P YD  RFG    R++PRQ+D++I
Sbjct: 22  LFTRLDDLVAWSRKHSLWPFNFGLSCCYVEMATALTPVYDQARFGAEVIRSTPRQADLLI 81

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           V+GT+  KMA  L R+Y QM EPR+VISMG+CAN GG Y   YSVV+G D  +PVD+YVP
Sbjct: 82  VSGTVFRKMAVPLYRLYQQMREPRWVISMGACANSGGMYDI-YSVVQGVDSFLPVDVYVP 140

Query: 158 GCPPTAEALIYGILLLQKKI 177
           GCPP  EAL+  ++LLQ KI
Sbjct: 141 GCPPRPEALMEALVLLQSKI 160


>gi|114804269|ref|YP_762265.1| NADH-plastoquinone oxidoreductase subunit K [Morus indica]
 gi|78100321|gb|ABB20962.1| NADH-plastoquinone oxidoreductase subunit K [Morus indica]
          Length = 282

 Score =  155 bits (392), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 70/147 (47%), Positives = 100/147 (68%), Gaps = 1/147 (0%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
           T    + T+   L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPRQ+
Sbjct: 70  TQNSVISTTSSDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 129

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152
           D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++PV
Sbjct: 130 DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 189

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179
           D+Y+PGCPP  EA+I  I  L+KKI R
Sbjct: 190 DVYLPGCPPKPEAVIDAITKLRKKISR 216


>gi|113477002|ref|YP_723063.1| NADH dehydrogenase subunit B [Trichodesmium erythraeum IMS101]
 gi|123160442|sp|Q10YT4|NDHK_TRIEI RecName: Full=NAD(P)H-quinone oxidoreductase subunit K; AltName:
           Full=NAD(P)H dehydrogenase I subunit K; AltName:
           Full=NDH-1 subunit K; Short=NDH-K
 gi|110168050|gb|ABG52590.1| NADH-quinone oxidoreductase, B subunit [Trichodesmium erythraeum
           IMS101]
          Length = 240

 Score =  155 bits (392), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 76/172 (44%), Positives = 110/172 (63%), Gaps = 11/172 (6%)

Query: 7   NQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCA 66
           NQKII+      +E+       +S  I     ++T+VD L  WA+  SL  + +G ACC 
Sbjct: 8   NQKIIN-----PIEESPTVTQELSENI-----VLTTVDDLYNWAKLSSLWPLLYGTACCF 57

Query: 67  VEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISM 126
           +E       R+D +RFG  PR+SPRQ+D++I AGT+T K    L R+Y+QMPEP+YVI+M
Sbjct: 58  IEFAALIGSRFDFDRFGLVPRSSPRQADLLITAGTITMKYTPTLVRLYEQMPEPKYVIAM 117

Query: 127 GSCANGGGYYHY-SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
           G+C   GG +   S + VRG D+++PVD+Y+PGCPP  EA+I  ++ L+KKI
Sbjct: 118 GACTITGGMFSMDSPTAVRGVDKLIPVDVYIPGCPPRPEAIIDAVIKLRKKI 169


>gi|153004158|ref|YP_001378483.1| NADH dehydrogenase subunit B [Anaeromyxobacter sp. Fw109-5]
 gi|238065026|sp|A7H9V3|NUOB2_ANADF RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName:
           Full=NADH dehydrogenase I subunit B 2; AltName:
           Full=NDH-1 subunit B 2
 gi|152027731|gb|ABS25499.1| NADH-quinone oxidoreductase, B subunit [Anaeromyxobacter sp.
           Fw109-5]
          Length = 183

 Score =  155 bits (392), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 75/144 (52%), Positives = 103/144 (71%), Gaps = 2/144 (1%)

Query: 36  KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQSD 94
           +GFL   V + + WAR  SL    F  ACC +E M  +  RYDL+RFG A PR SPRQ+D
Sbjct: 19  QGFLQGLVSKGLGWARKYSLFQYPFVTACCGMEFMTVASARYDLDRFGAALPRFSPRQAD 78

Query: 95  VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154
           ++IV GT+  K A  LRRVY+Q+ EP++V++ G CA+ GG+Y  +Y+ V+G DRIVPVD+
Sbjct: 79  LLIVVGTVNCKQAPILRRVYEQIAEPKWVVAFGVCASSGGFYD-NYATVQGIDRIVPVDV 137

Query: 155 YVPGCPPTAEALIYGILLLQKKIR 178
           Y+PGCPP  E ++ GI+LLQ+KI+
Sbjct: 138 YIPGCPPRPEQVLDGIMLLQQKIQ 161


>gi|197131354|gb|ACH47195.1| NADH-plastoquinone oxidoreductase subunit K [Geranium carolinianum]
          Length = 225

 Score =  155 bits (392), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 72/150 (48%), Positives = 102/150 (68%), Gaps = 1/150 (0%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
           T    L T+ + L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPRQ+
Sbjct: 13  TPNSVLSTTPNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 72

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152
           D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++PV
Sbjct: 73  DLVLTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 132

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
           D+Y+PGCPP  EA+I  I  L+KKI R  N
Sbjct: 133 DVYLPGCPPKPEAVIDAITKLRKKISREIN 162


>gi|260887648|ref|ZP_05898911.1| NADH dehydrogenase I, B subunit [Selenomonas sputigena ATCC 35185]
 gi|330838007|ref|YP_004412587.1| NADH-quinone oxidoreductase, B subunit [Selenomonas sputigena ATCC
           35185]
 gi|260862664|gb|EEX77164.1| NADH dehydrogenase I, B subunit [Selenomonas sputigena ATCC 35185]
 gi|329745771|gb|AEB99127.1| NADH-quinone oxidoreductase, B subunit [Selenomonas sputigena ATCC
           35185]
          Length = 169

 Score =  155 bits (392), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 73/146 (50%), Positives = 104/146 (71%), Gaps = 1/146 (0%)

Query: 35  HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQS 93
            +  +VTSVD +  WAR+ S+  +  GLACC++EMM  +  R+DL RFG+   RA PRQ+
Sbjct: 12  RENVIVTSVDAVFKWARSRSIWPLASGLACCSIEMMATAASRFDLARFGYEVFRACPRQA 71

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD 153
           D++IVAGTLT KM   L R+Y++MPEP+YVI+MG+C   GG +  SY+ V+  D ++PVD
Sbjct: 72  DLLIVAGTLTWKMTPPLIRLYEEMPEPKYVIAMGNCNIHGGPFTDSYATVKCLDEVLPVD 131

Query: 154 IYVPGCPPTAEALIYGILLLQKKIRR 179
           +Y+PGCPP  EALI  ++ L+ KI+ 
Sbjct: 132 LYLPGCPPRPEALIDAMIKLRNKIQH 157


>gi|154795227|ref|NP_904103.3| NADH dehydrogenase subunit K [Amborella trichopoda]
 gi|218527907|sp|Q70XZ9|NDHK_AMBTC RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
          Length = 225

 Score =  155 bits (392), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 69/147 (46%), Positives = 101/147 (68%), Gaps = 1/147 (0%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
           T    + T+ + L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPRQ+
Sbjct: 13  TPNSVISTTPNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 72

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152
           D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++PV
Sbjct: 73  DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 132

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179
           D+Y+PGCPP  EA+I  I  L+KK+ R
Sbjct: 133 DVYLPGCPPKPEAIIDAITKLRKKVSR 159


>gi|139389268|ref|YP_001123034.1| photosystem II G protein [Aethionema grandiflorum]
 gi|218527880|sp|A4QJK3|NDHK_AETGR RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
 gi|134286230|dbj|BAF49858.1| photosystem II G protein [Aethionema grandiflorum]
          Length = 229

 Score =  155 bits (392), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 69/147 (46%), Positives = 101/147 (68%), Gaps = 1/147 (0%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
           T    + T+++ L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPRQ+
Sbjct: 13  TKNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 72

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152
           D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++PV
Sbjct: 73  DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 132

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179
           D+Y+PGCPP  EA+I  I  L+ KI R
Sbjct: 133 DVYLPGCPPKPEAVIDAITKLRTKIAR 159


>gi|14017576|ref|NP_114263.1| NADH dehydrogenase subunit K [Triticum aestivum]
 gi|556460|gb|AAA84731.1| thylakoid membrane protein [Triticum aestivum]
 gi|13928209|dbj|BAB47038.1| NADH dehydrogenase 27kDa subunit [Triticum aestivum]
          Length = 245

 Score =  155 bits (392), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 68/149 (45%), Positives = 102/149 (68%), Gaps = 1/149 (0%)

Query: 32  EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPR 91
           + +    + T+ + L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPR
Sbjct: 31  QTSSNSVISTTPNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPR 90

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIV 150
           Q+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++
Sbjct: 91  QADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLI 150

Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           PVD+Y+PGCPP  EA+I  +  L+KKI R
Sbjct: 151 PVDVYLPGCPPKPEAVIDALTKLRKKISR 179


>gi|112032666|gb|ABH88301.1| NADH-plastoquinone oxidoreductase subunit K [Drimys granadensis]
          Length = 287

 Score =  155 bits (392), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 69/147 (46%), Positives = 101/147 (68%), Gaps = 1/147 (0%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
           T    + T+ + L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPRQ+
Sbjct: 73  TQNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 132

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152
           D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++PV
Sbjct: 133 DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 192

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179
           D+Y+PGCPP  EA+I  I  L+KK+ R
Sbjct: 193 DVYLPGCPPKPEAVIDAITKLRKKVSR 219


>gi|66876455|gb|AAY58009.1| NdhK [Dinetus truncatus]
          Length = 224

 Score =  155 bits (392), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 69/142 (48%), Positives = 100/142 (70%), Gaps = 1/142 (0%)

Query: 39  LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIV 98
           + T+ + L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPRQ+D+++ 
Sbjct: 18  ISTTFNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILT 77

Query: 99  AGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPVDIYVP 157
           AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++PVD+Y+P
Sbjct: 78  AGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLP 137

Query: 158 GCPPTAEALIYGILLLQKKIRR 179
           GCPP  EA+I  I  L+KKI R
Sbjct: 138 GCPPKPEAVIDAITKLRKKISR 159


>gi|159106868|ref|YP_001531287.1| NADH-plastoquinone oxidoreductase subunit K [Lolium perenne]
 gi|158934402|emb|CAO85980.1| NADH-plastoquinone oxidoreductase subunit K [Lolium perenne]
          Length = 246

 Score =  155 bits (392), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 68/149 (45%), Positives = 102/149 (68%), Gaps = 1/149 (0%)

Query: 32  EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPR 91
           + +    + T+ + L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPR
Sbjct: 32  QTSSNSVISTTPNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPR 91

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIV 150
           Q+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++
Sbjct: 92  QADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLI 151

Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           PVD+Y+PGCPP  EA+I  +  L+KKI R
Sbjct: 152 PVDVYLPGCPPKPEAVIDALTKLRKKISR 180


>gi|290489716|gb|ADD31242.1| NADH-plastoquinone oxidoreductase subunit K protein [Meliosma aff.
           cuneifolia Moore 333]
          Length = 285

 Score =  155 bits (392), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 69/147 (46%), Positives = 101/147 (68%), Gaps = 1/147 (0%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
           T    + T+ + L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPRQ+
Sbjct: 73  TQNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 132

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152
           D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++PV
Sbjct: 133 DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 192

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179
           D+Y+PGCPP  EA+I  I  L+KK+ R
Sbjct: 193 DVYLPGCPPKPEAVIDAITKLRKKVSR 219


>gi|225544128|ref|YP_002720116.1| ndhK [Jatropha curcas]
 gi|224979569|gb|ACN72696.1| ndhK [Jatropha curcas]
          Length = 225

 Score =  155 bits (392), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 70/149 (46%), Positives = 102/149 (68%), Gaps = 1/149 (0%)

Query: 32  EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPR 91
           + T    + T+ + L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPR
Sbjct: 11  QTTKISVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPR 70

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIV 150
           Q+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++
Sbjct: 71  QADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLI 130

Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           PVD+Y+PGCPP  EA+I  I  L+KKI R
Sbjct: 131 PVDVYLPGCPPKPEAVIDAITKLRKKISR 159


>gi|218527904|sp|A6MM40|NDHK_BUXMI RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
          Length = 200

 Score =  155 bits (392), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 69/147 (46%), Positives = 101/147 (68%), Gaps = 1/147 (0%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
           T    + T+ + L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPRQ+
Sbjct: 13  TQNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 72

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152
           D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++PV
Sbjct: 73  DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 132

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179
           D+Y+PGCPP  EA+I  I  L+KK+ R
Sbjct: 133 DVYLPGCPPKPEAVIDAITKLRKKVSR 159


>gi|156598545|gb|ABU85530.1| NADH-plastoquinone oxidoreductase subunit K [Passiflora biflora]
          Length = 237

 Score =  155 bits (392), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 70/142 (49%), Positives = 99/142 (69%), Gaps = 1/142 (0%)

Query: 39  LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIV 98
           + T+ + L  WAR  SL  + +G +CC +E       R+D +R+G  PR+SPRQ+D+++ 
Sbjct: 25  ISTTPNDLSNWARLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILT 84

Query: 99  AGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPVDIYVP 157
           AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++PVD Y+P
Sbjct: 85  AGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDAYLP 144

Query: 158 GCPPTAEALIYGILLLQKKIRR 179
           GCPP  EA+I  I  L+KKI R
Sbjct: 145 GCPPKPEAVIDAITKLRKKISR 166


>gi|296936675|gb|ADH94347.1| NADH-plastoquinone oxidoreductase subunit K [Syzygium cumini]
          Length = 284

 Score =  155 bits (392), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 70/147 (47%), Positives = 101/147 (68%), Gaps = 1/147 (0%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
           T    + T+ + L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPRQ+
Sbjct: 72  TQNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 131

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152
           D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++PV
Sbjct: 132 DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 191

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179
           D+Y+PGCPP  EA+I  I  L+KKI R
Sbjct: 192 DVYLPGCPPKPEAVIDAITKLRKKIAR 218


>gi|290489738|gb|ADD31253.1| NADH-plastoquinone oxidoreductase subunit K protein [Liquidambar
           styraciflua]
          Length = 285

 Score =  155 bits (392), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 70/147 (47%), Positives = 101/147 (68%), Gaps = 1/147 (0%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
           T    + T+ + L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPRQ+
Sbjct: 73  TQNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 132

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152
           D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++PV
Sbjct: 133 DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 192

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179
           D+Y+PGCPP  EA+I  I  L+KKI R
Sbjct: 193 DVYLPGCPPKPEAVIDAITKLRKKISR 219


>gi|73670849|ref|YP_306864.1| F420H2 dehydrogenase subunit B [Methanosarcina barkeri str. Fusaro]
 gi|72398011|gb|AAZ72284.1| F420H2 dehydrogenase subunit B [Methanosarcina barkeri str. Fusaro]
          Length = 184

 Score =  155 bits (392), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 73/174 (41%), Positives = 109/174 (62%), Gaps = 3/174 (1%)

Query: 6   VNQKIISGQSSCSLEKVDADFSRISSEITHKGFLV-TSVDQLVTWARTGSLMWMTFGLAC 64
           V +K  S     S E++    +  S+ I+   FL  T V  ++ W R  SL +MT  + C
Sbjct: 4   VKEKKTSKPYETSEEEIPGVITTTSNAISE--FLKKTKVQDIINWGRKNSLWFMTQPMGC 61

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C VEM+      YD +RFG  PR SPRQ+DVM+++G +T K   AL+R+++QMP P++VI
Sbjct: 62  CGVEMIAMGCAHYDTDRFGIIPRNSPRQADVMLISGYVTKKYLPALKRLWEQMPSPKWVI 121

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           + G C+  GG ++ SYS V+  D I P+D++VPGCPP  EA++ G + LQ+KI+
Sbjct: 122 AFGDCSISGGPFYESYSTVQNIDEIFPIDVFVPGCPPRPEAMLQGFVELQEKIK 175


>gi|218527896|sp|B2XWK8|NDHK_FAGEA RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
          Length = 225

 Score =  155 bits (392), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 70/146 (47%), Positives = 101/146 (69%), Gaps = 1/146 (0%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           IT    + T+ + L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPRQ
Sbjct: 12  ITPNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQ 71

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVP 151
           +D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++P
Sbjct: 72  ADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIP 131

Query: 152 VDIYVPGCPPTAEALIYGILLLQKKI 177
           VD+Y+PGCPP  EA+I  I  L+KKI
Sbjct: 132 VDVYLPGCPPKPEAVIDAITKLRKKI 157


>gi|309322236|ref|YP_003934314.1| NADH-plastoquinone oxidoreductase subunit K [Monsonia speciosa]
 gi|197131360|gb|ACH47198.1| NADH-plastoquinone oxidoreductase subunit K [Monsonia speciosa]
 gi|300069329|gb|ADJ66449.1| NADH-plastoquinone oxidoreductase subunit K [Monsonia speciosa]
          Length = 225

 Score =  155 bits (392), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 71/147 (48%), Positives = 100/147 (68%), Gaps = 1/147 (0%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
           T    L T+   L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPRQ+
Sbjct: 13  TQNSVLSTTSTDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 72

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152
           D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++PV
Sbjct: 73  DLVLTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 132

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179
           D+Y+PGCPP  EA+I  I  L+KKI R
Sbjct: 133 DVYLPGCPPKPEAVIDAITKLRKKIAR 159


>gi|66876438|gb|AAY57998.1| NdhK [Jacquemontia tamnifolia]
          Length = 224

 Score =  155 bits (392), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 68/149 (45%), Positives = 101/149 (67%), Gaps = 1/149 (0%)

Query: 32  EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPR 91
           +      + T++  L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPR
Sbjct: 11  QTAKNSVISTTLTDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPR 70

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIV 150
           Q+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++
Sbjct: 71  QADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLI 130

Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           PVD+Y+PGCPP  EA++  I  L+KKI R
Sbjct: 131 PVDVYLPGCPPKPEAILDAITKLRKKISR 159


>gi|319789707|ref|YP_004151340.1| NADH-quinone oxidoreductase, B subunit [Thermovibrio ammonificans
           HB-1]
 gi|317114209|gb|ADU96699.1| NADH-quinone oxidoreductase, B subunit [Thermovibrio ammonificans
           HB-1]
          Length = 157

 Score =  155 bits (391), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 67/145 (46%), Positives = 100/145 (68%), Gaps = 1/145 (0%)

Query: 35  HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSD 94
            +G  +T +  L+ W R G+L  + F  ACC +EMM A+  RYD +RFG   R +PRQ D
Sbjct: 4   REGVFLTKLQDLINWGRKGALWPLAFATACCGIEMMAAAASRYDFDRFGVIFRNTPRQCD 63

Query: 95  VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154
           ++I+ GT++ KMA  ++R++DQMP+P++ I++GSCA  G  +  +YS +RG D IVPVD+
Sbjct: 64  LLIMCGTISRKMAPIIKRLWDQMPDPKWAIAIGSCAISGNIFQ-TYSTLRGLDCIVPVDV 122

Query: 155 YVPGCPPTAEALIYGILLLQKKIRR 179
           YVPGC P  EA    +++LQ+KI+R
Sbjct: 123 YVPGCAPKPEAFYEALIMLQEKIKR 147


>gi|294496248|ref|YP_003542741.1| F420H2 dehydrogenase subunit B [Methanohalophilus mahii DSM 5219]
 gi|292667247|gb|ADE37096.1| F420H2 dehydrogenase subunit B [Methanohalophilus mahii DSM 5219]
          Length = 191

 Score =  155 bits (391), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 69/149 (46%), Positives = 95/149 (63%)

Query: 30  SSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS 89
           +S+  +K    T     + W R  SL +M   + CC VE++   M   D +RFG  PR S
Sbjct: 32  TSQEINKFLQKTKAQDFINWGRKNSLWFMAQAMGCCGVEIIVTGMSPMDTDRFGIIPRNS 91

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQ+DVMI++G +T K   AL+++YDQMP P++VI MG C+  GG ++ SYS V+  D I
Sbjct: 92  PRQADVMIISGYVTKKYLPALKKLYDQMPSPKWVICMGDCSISGGPFYESYSTVQNIDEI 151

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIR 178
            PVD+++PGCPP  EALI G L +QKKI 
Sbjct: 152 FPVDVFIPGCPPRPEALIQGFLEIQKKIE 180


>gi|156598694|gb|ABU85602.1| NADH-plastoquinone oxidoreductase subunit K [Scaevola aemula]
          Length = 222

 Score =  155 bits (391), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 69/147 (46%), Positives = 101/147 (68%), Gaps = 1/147 (0%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
           T    + T+++ L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPRQ+
Sbjct: 10  TQNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 69

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152
           D+++ AGT+T KM  +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++PV
Sbjct: 70  DLILTAGTVTMKMGPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 129

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179
           D+Y+PGCPP  EA+I  I  L+KKI R
Sbjct: 130 DVYLPGCPPKPEAVIDAITKLRKKISR 156


>gi|118430306|ref|YP_874740.1| NADH-plastoquinone oxidoreductase subunit K [Agrostis stolonifera]
 gi|118201215|gb|ABK79584.1| NADH-plastoquinone oxidoreductase subunit K [Agrostis stolonifera]
          Length = 245

 Score =  155 bits (391), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 68/149 (45%), Positives = 102/149 (68%), Gaps = 1/149 (0%)

Query: 32  EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPR 91
           + +    + T+ + L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPR
Sbjct: 31  QTSSNSVISTTPNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPR 90

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIV 150
           Q+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++
Sbjct: 91  QADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLI 150

Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           PVD+Y+PGCPP  EA+I  +  L+KKI R
Sbjct: 151 PVDVYLPGCPPKPEAVIDALTKLRKKISR 179


>gi|290489740|gb|ADD31254.1| NADH-plastoquinone oxidoreductase subunit K protein [Oxalis
           latifolia]
          Length = 246

 Score =  155 bits (391), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 69/147 (46%), Positives = 101/147 (68%), Gaps = 1/147 (0%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
           T    + T+ + L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPRQ+
Sbjct: 34  TKNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 93

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152
           D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++PV
Sbjct: 94  DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 153

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179
           D+Y+PGCPP  EA+I  I  L+KKI +
Sbjct: 154 DVYLPGCPPKPEAVIDAITKLRKKISQ 180


>gi|254283162|ref|ZP_04958130.1| NADH dehydrogenase i, b subunit [gamma proteobacterium NOR51-B]
 gi|219679365|gb|EED35714.1| NADH dehydrogenase i, b subunit [gamma proteobacterium NOR51-B]
          Length = 214

 Score =  155 bits (391), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 71/148 (47%), Positives = 102/148 (68%), Gaps = 2/148 (1%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RAS 89
           +E   +  +   ++ L+ W R  SL    FGL+CC VEM  +   R+D+ RFG    RA+
Sbjct: 24  AEQIRRNVMFARLEDLIAWGRAHSLWPFNFGLSCCYVEMATSFTSRHDIARFGSEVIRAT 83

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQ+D+M+++GT+  KMA  ++ +YDQ+ EPR++ISMGSCAN GG Y   YSVV+G D+ 
Sbjct: 84  PRQADLMVISGTVFRKMAPVVQHLYDQLLEPRWIISMGSCANSGGMYDI-YSVVQGVDKF 142

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKI 177
           +PVD+YVPGCPP  EAL+ G+++LQ  I
Sbjct: 143 IPVDVYVPGCPPRPEALMQGLMMLQDAI 170


>gi|154795236|ref|NP_039387.2| NADH dehydrogenase subunit K [Oryza sativa Japonica Group]
          Length = 225

 Score =  155 bits (391), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 68/140 (48%), Positives = 99/140 (70%), Gaps = 1/140 (0%)

Query: 41  TSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAG 100
           T++  L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPRQ+D+++ AG
Sbjct: 20  TTLKDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAG 79

Query: 101 TLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPVDIYVPGC 159
           T+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++PVD+Y+PGC
Sbjct: 80  TVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGC 139

Query: 160 PPTAEALIYGILLLQKKIRR 179
           PP  EA+I  +  L+KKI R
Sbjct: 140 PPKPEAVIDALTKLRKKISR 159


>gi|218176248|ref|YP_002364505.1| NADH-plastoquinone oxidoreductase subunit K [Festuca arundinacea]
 gi|215882332|gb|ACJ70762.1| NADH-plastoquinone oxidoreductase subunit K [Festuca arundinacea]
          Length = 246

 Score =  155 bits (391), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 68/140 (48%), Positives = 99/140 (70%), Gaps = 1/140 (0%)

Query: 41  TSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAG 100
           T+ + L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPRQ+D+++ AG
Sbjct: 41  TTPNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAG 100

Query: 101 TLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPVDIYVPGC 159
           T+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++PVD+Y+PGC
Sbjct: 101 TVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGC 160

Query: 160 PPTAEALIYGILLLQKKIRR 179
           PP  EA+I  +  L+KKI R
Sbjct: 161 PPKPEAVIDALTKLRKKISR 180


>gi|218527961|sp|A8Y9H4|NDHK_LOLPR RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
          Length = 225

 Score =  155 bits (391), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 68/149 (45%), Positives = 102/149 (68%), Gaps = 1/149 (0%)

Query: 32  EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPR 91
           + +    + T+ + L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPR
Sbjct: 11  QTSSNSVISTTPNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPR 70

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIV 150
           Q+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++
Sbjct: 71  QADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLI 130

Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           PVD+Y+PGCPP  EA+I  +  L+KKI R
Sbjct: 131 PVDVYLPGCPPKPEAVIDALTKLRKKISR 159


>gi|290790852|gb|ADD63108.1| NADH-plastoquinone oxidoreductase subunit K [Microlaena stipoides]
          Length = 253

 Score =  155 bits (391), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 68/149 (45%), Positives = 102/149 (68%), Gaps = 1/149 (0%)

Query: 32  EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPR 91
           + +    + T+ + L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPR
Sbjct: 39  QTSSNSVISTTPNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPR 98

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIV 150
           Q+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++
Sbjct: 99  QADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLI 158

Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           PVD+Y+PGCPP  EA+I  +  L+KKI R
Sbjct: 159 PVDVYLPGCPPKPEAVIDALTKLRKKIAR 187


>gi|139389805|ref|YP_001123466.1| NADH dehydrogenase subunit K [Crucihimalaya wallichii]
 gi|218527886|sp|A4QKT5|NDHK_CRUWA RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
 gi|134286667|dbj|BAF50290.1| photosystem II G protein [Crucihimalaya wallichii]
          Length = 225

 Score =  155 bits (391), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 69/147 (46%), Positives = 101/147 (68%), Gaps = 1/147 (0%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
           T    + T+++ L  W+   SL  + +G +CC +E       R+D +R+G  PR+SPRQ+
Sbjct: 13  TKNSVISTTLNDLSNWSELSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 72

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152
           D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++PV
Sbjct: 73  DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 132

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179
           D+Y+PGCPP  EA+I  I  L+KKI R
Sbjct: 133 DVYLPGCPPKPEAVIDAITKLRKKIAR 159


>gi|162448793|ref|YP_001611160.1| NADH dehydrogenase (ubiquinone) [Sorangium cellulosum 'So ce 56']
 gi|238065021|sp|A9GUX6|NUOB1_SORC5 RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName:
           Full=NADH dehydrogenase I subunit B 1; AltName:
           Full=NDH-1 subunit B 1
 gi|161159375|emb|CAN90680.1| NADH dehydrogenase (ubiquinone) [Sorangium cellulosum 'So ce 56']
          Length = 194

 Score =  155 bits (391), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 70/149 (46%), Positives = 104/149 (69%), Gaps = 2/149 (1%)

Query: 32  EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASP 90
           E +  GF  T VD L+ WA+  SL    F  ACC +E M  + PR+D+ RFG   PR SP
Sbjct: 15  EGSEHGFATTRVDALLNWAKKYSLFQYPFVTACCGMEYMAMASPRFDMARFGAEVPRFSP 74

Query: 91  RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150
           RQ+D++ V GT++ + A AL+R+Y+QM +P++V++ G+CA+ GG+Y  +Y+ V G D+++
Sbjct: 75  RQADLLWVVGTISQRQAPALKRIYEQMADPKWVLAFGTCASCGGFYD-NYTTVAGIDKVI 133

Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           P D+YVPGCPP  EA++ G++LLQ KI R
Sbjct: 134 PCDVYVPGCPPRPEAVLDGLMLLQDKIAR 162


>gi|254480961|ref|ZP_05094207.1| NADH-quinone oxidoreductase, B subunit subfamily, putative [marine
           gamma proteobacterium HTCC2148]
 gi|41582331|gb|AAS07945.1| NADH-quinone oxidoreductase, B subunit [uncultured marine bacterium
           463]
 gi|214038756|gb|EEB79417.1| NADH-quinone oxidoreductase, B subunit subfamily, putative [marine
           gamma proteobacterium HTCC2148]
          Length = 214

 Score =  155 bits (391), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 71/150 (47%), Positives = 101/150 (67%), Gaps = 2/150 (1%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RAS 89
            E   +      ++ L+ W R  SL    FGL+CC VEM  +   R+D+ RFG    RA+
Sbjct: 24  EEQIKRNVFFARLEDLIAWGRAHSLWPFNFGLSCCYVEMATSFTSRHDIARFGSEVIRAT 83

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQ+D+M+++GT+  KMA  ++ +YDQ+ EPR++ISMGSCAN GG Y   YSVV+G D+ 
Sbjct: 84  PRQADLMVISGTVFRKMAPVVQHLYDQLLEPRWIISMGSCANSGGMYDI-YSVVQGVDKF 142

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           +PVD+YVPGCPP  EAL+ G+++LQ  I +
Sbjct: 143 IPVDVYVPGCPPRPEALMQGLMMLQDAIEQ 172


>gi|218511715|sp|P26304|NDHK_WHEAT RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
          Length = 225

 Score =  155 bits (391), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 68/149 (45%), Positives = 102/149 (68%), Gaps = 1/149 (0%)

Query: 32  EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPR 91
           + +    + T+ + L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPR
Sbjct: 11  QTSSNSVISTTPNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPR 70

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIV 150
           Q+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++
Sbjct: 71  QADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLI 130

Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           PVD+Y+PGCPP  EA+I  +  L+KKI R
Sbjct: 131 PVDVYLPGCPPKPEAVIDALTKLRKKISR 159


>gi|242910158|ref|YP_002970648.1| NADH-plastoquinone oxidoreductase subunit K [Alsophila spinulosa]
 gi|218454827|gb|ACK77164.1| NADH-plastoquinone oxidoreductase subunit K [Alsophila spinulosa]
          Length = 251

 Score =  155 bits (391), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 66/142 (46%), Positives = 100/142 (70%), Gaps = 1/142 (0%)

Query: 39  LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIV 98
           L+ +++    W+R  SL  + +G +CC +E       R+D +R+G  PR+SPRQ+D+++ 
Sbjct: 41  LLANINDFSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLIVT 100

Query: 99  AGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPVDIYVP 157
           AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++PVD+Y+P
Sbjct: 101 AGTITMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDLYLP 160

Query: 158 GCPPTAEALIYGILLLQKKIRR 179
           GCPP  EA+I  +  L+KK+ R
Sbjct: 161 GCPPKPEAIIDAVTKLRKKMAR 182


>gi|74381713|emb|CAI53798.1| photosystem II G protein [Acorus calamus]
 gi|156573647|gb|ABU85157.1| NADH-plastoquinone oxidoreductase subunit K [Acorus americanus]
          Length = 297

 Score =  155 bits (391), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 69/147 (46%), Positives = 102/147 (69%), Gaps = 1/147 (0%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
           T    + T+++ L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPRQ+
Sbjct: 71  TPNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 130

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152
           D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++PV
Sbjct: 131 DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 190

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179
           D+Y+PGCPP  EA+I  I  L+KK+ R
Sbjct: 191 DVYLPGCPPKPEAVIDAITKLRKKLSR 217


>gi|156598201|gb|ABU85364.1| NADH-plastoquinone oxidoreductase subunit K [Elaeis oleifera]
          Length = 287

 Score =  155 bits (391), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 69/149 (46%), Positives = 103/149 (69%), Gaps = 1/149 (0%)

Query: 32  EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPR 91
           + T    + T+ + L  W+R  SL  + +G +CC +E       R+D +R+G  P++SPR
Sbjct: 70  QTTPNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPKSSPR 129

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIV 150
           Q+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++
Sbjct: 130 QADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLI 189

Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           PVD+Y+PGCPP  EA+I  I+ L+KKI R
Sbjct: 190 PVDVYLPGCPPKPEAVIDAIMKLRKKISR 218


>gi|194033153|ref|YP_002000491.1| NADH dehydrogenase subunit K [Brachypodium distachyon]
 gi|193075561|gb|ACF08644.1| NADH dehydrogenase 27kDa subunit [Brachypodium distachyon]
          Length = 245

 Score =  154 bits (390), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 68/149 (45%), Positives = 102/149 (68%), Gaps = 1/149 (0%)

Query: 32  EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPR 91
           + +    + T+ + L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPR
Sbjct: 31  QTSSNSVISTTPNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPR 90

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIV 150
           Q+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++
Sbjct: 91  QADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLI 150

Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           PVD+Y+PGCPP  EA+I  +  L+KKI R
Sbjct: 151 PVDVYLPGCPPKPEAVIDALTKLRKKISR 179


>gi|12427|emb|CAA35482.1| unnamed protein product [Zea mays]
 gi|552735|gb|AAA84484.1| PSII-G [Zea mays]
 gi|48478677|gb|AAT44697.1| NADH dehydrogenase subunit K [Saccharum hybrid cultivar SP80-3280]
 gi|49659516|dbj|BAD27297.1| NADH dehydrogenase 27kD subunit [Saccharum hybrid cultivar NCo 310]
 gi|118201130|gb|ABK79500.1| NADH-plastoquinone oxidoreductase subunit K [Sorghum bicolor]
          Length = 248

 Score =  154 bits (390), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 68/149 (45%), Positives = 102/149 (68%), Gaps = 1/149 (0%)

Query: 32  EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPR 91
           + +    + T+ + L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPR
Sbjct: 32  QTSSNSVISTTPNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPR 91

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIV 150
           Q+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++
Sbjct: 92  QADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLI 151

Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           PVD+Y+PGCPP  EA+I  +  L+KKI R
Sbjct: 152 PVDVYLPGCPPKPEAVIDALTKLRKKIAR 180


>gi|290489746|gb|ADD31257.1| NADH-plastoquinone oxidoreductase subunit K protein [Staphylea
           colchica]
          Length = 226

 Score =  154 bits (390), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 69/142 (48%), Positives = 100/142 (70%), Gaps = 1/142 (0%)

Query: 39  LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIV 98
           + T+ + L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPRQ+D+++ 
Sbjct: 18  ISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILT 77

Query: 99  AGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPVDIYVP 157
           AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++PVD+Y+P
Sbjct: 78  AGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLP 137

Query: 158 GCPPTAEALIYGILLLQKKIRR 179
           GCPP  EA+I  I  L+KKI R
Sbjct: 138 GCPPKPEAVIDAITKLRKKISR 159


>gi|218527903|sp|B3TN55|NDHK_BRADI RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
          Length = 225

 Score =  154 bits (390), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 68/149 (45%), Positives = 102/149 (68%), Gaps = 1/149 (0%)

Query: 32  EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPR 91
           + +    + T+ + L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPR
Sbjct: 11  QTSSNSVISTTPNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPR 70

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIV 150
           Q+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++
Sbjct: 71  QADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLI 130

Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           PVD+Y+PGCPP  EA+I  +  L+KKI R
Sbjct: 131 PVDVYLPGCPPKPEAVIDALTKLRKKISR 159


>gi|20068335|emb|CAC88048.1| NADH dehydrogenase 32kD subunit [Atropa belladonna]
          Length = 284

 Score =  154 bits (390), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 69/140 (49%), Positives = 100/140 (71%), Gaps = 1/140 (0%)

Query: 41  TSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAG 100
           T+++ L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPRQ+D+++ AG
Sbjct: 79  TTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAG 138

Query: 101 TLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPVDIYVPGC 159
           T+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++PVD+Y+PGC
Sbjct: 139 TVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGC 198

Query: 160 PPTAEALIYGILLLQKKIRR 179
           PP  EA+I  I  L+KKI R
Sbjct: 199 PPKPEAVIDAITKLRKKISR 218


>gi|218527906|sp|A1EA12|NDHK_AGRST RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
          Length = 225

 Score =  154 bits (390), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 68/149 (45%), Positives = 102/149 (68%), Gaps = 1/149 (0%)

Query: 32  EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPR 91
           + +    + T+ + L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPR
Sbjct: 11  QTSSNSVISTTPNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPR 70

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIV 150
           Q+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++
Sbjct: 71  QADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLI 130

Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           PVD+Y+PGCPP  EA+I  +  L+KKI R
Sbjct: 131 PVDVYLPGCPPKPEAVIDALTKLRKKISR 159


>gi|80750929|dbj|BAE48005.1| NADH dehydrogenase 27kD subunit [Nicotiana tomentosiformis]
          Length = 284

 Score =  154 bits (390), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 69/140 (49%), Positives = 100/140 (71%), Gaps = 1/140 (0%)

Query: 41  TSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAG 100
           T+++ L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPRQ+D+++ AG
Sbjct: 79  TTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAG 138

Query: 101 TLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPVDIYVPGC 159
           T+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++PVD+Y+PGC
Sbjct: 139 TVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGC 198

Query: 160 PPTAEALIYGILLLQKKIRR 179
           PP  EA+I  I  L+KKI R
Sbjct: 199 PPKPEAVIDAITKLRKKISR 218


>gi|116617112|ref|YP_817486.1| NADH-plastoquinone oxidoreductase subunit K [Coffea arabica]
 gi|122153625|sp|A0A339|NDHK_COFAR RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
 gi|116242168|gb|ABJ89683.1| NADH-plastoquinone oxidoreductase subunit K [Coffea arabica]
          Length = 229

 Score =  154 bits (390), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 68/142 (47%), Positives = 100/142 (70%), Gaps = 1/142 (0%)

Query: 39  LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIV 98
           + T+++    W+R  SL  + +G +CC +E       R+D +R+G  PR+SPRQ+D+++ 
Sbjct: 18  ISTTLNDFSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILT 77

Query: 99  AGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPVDIYVP 157
           AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++PVD+Y+P
Sbjct: 78  AGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLP 137

Query: 158 GCPPTAEALIYGILLLQKKIRR 179
           GCPP  EA+I  I  L+KKI R
Sbjct: 138 GCPPKPEAVIDAITKLRKKISR 159


>gi|159161164|ref|YP_001542451.1| NADH-plastoquinone oxidoreductase subunit K [Ceratophyllum
           demersum]
 gi|148508447|gb|ABQ81454.1| NADH-plastoquinone oxidoreductase subunit K [Ceratophyllum
           demersum]
 gi|227481123|emb|CAP62502.1| photosystem II G protein [Ceratophyllum demersum]
          Length = 249

 Score =  154 bits (390), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 68/147 (46%), Positives = 101/147 (68%), Gaps = 1/147 (0%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
           T    + T+ + L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPRQ+
Sbjct: 34  TKNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 93

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152
           D+++ AGT+T KMA +L R+Y+QMP+P+YVI+MG+C   GG +   SYS VRG D+++PV
Sbjct: 94  DLILTAGTITMKMAPSLVRLYEQMPKPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 153

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179
           D+Y+PGCPP  EA+I  I  L+KK+ R
Sbjct: 154 DVYLPGCPPKPEAVIDAITKLRKKVSR 180


>gi|218527901|sp|A8SEA7|NDHK_CERDE RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
          Length = 228

 Score =  154 bits (390), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 68/147 (46%), Positives = 101/147 (68%), Gaps = 1/147 (0%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
           T    + T+ + L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPRQ+
Sbjct: 13  TKNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 72

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152
           D+++ AGT+T KMA +L R+Y+QMP+P+YVI+MG+C   GG +   SYS VRG D+++PV
Sbjct: 73  DLILTAGTITMKMAPSLVRLYEQMPKPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 132

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179
           D+Y+PGCPP  EA+I  I  L+KK+ R
Sbjct: 133 DVYLPGCPPKPEAVIDAITKLRKKVSR 159


>gi|902226|emb|CAA60290.1| ndhK [Zea mays]
          Length = 248

 Score =  154 bits (390), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 68/149 (45%), Positives = 102/149 (68%), Gaps = 1/149 (0%)

Query: 32  EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPR 91
           + +    + T+ + L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPR
Sbjct: 32  QTSSNSVISTTPNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPR 91

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIV 150
           Q+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++
Sbjct: 92  QADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLI 151

Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           PVD+Y+PGCPP  EA+I  +  L+KKI R
Sbjct: 152 PVDVYLPGCPPKPEAVIDALTKLRKKIAR 180


>gi|149390544|ref|YP_001294188.1| NADH-plastoquinone oxidoreductase subunit K [Buxus microphylla]
 gi|146762289|gb|ABQ45253.1| NADH-plastoquinone oxidoreductase subunit K [Buxus microphylla]
          Length = 257

 Score =  154 bits (390), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 69/147 (46%), Positives = 101/147 (68%), Gaps = 1/147 (0%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
           T    + T+ + L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPRQ+
Sbjct: 70  TQNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 129

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152
           D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++PV
Sbjct: 130 DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 189

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179
           D+Y+PGCPP  EA+I  I  L+KK+ R
Sbjct: 190 DVYLPGCPPKPEAVIDAITKLRKKVSR 216


>gi|34481633|emb|CAD45111.1| photosystem II G protein [Amborella trichopoda]
          Length = 283

 Score =  154 bits (390), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 69/147 (46%), Positives = 101/147 (68%), Gaps = 1/147 (0%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
           T    + T+ + L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPRQ+
Sbjct: 71  TPNSVISTTPNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 130

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152
           D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++PV
Sbjct: 131 DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 190

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179
           D+Y+PGCPP  EA+I  I  L+KK+ R
Sbjct: 191 DVYLPGCPPKPEAIIDAITKLRKKVSR 217


>gi|156598283|gb|ABU85403.1| NADH-plastoquinone oxidoreductase subunit K [Ginkgo biloba]
          Length = 288

 Score =  154 bits (390), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 71/154 (46%), Positives = 104/154 (67%), Gaps = 1/154 (0%)

Query: 27  SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP 86
           S + +  T    + T+ + +  WAR  SL  + +G +CC++E       R+D +R+G  P
Sbjct: 64  SPLPNRTTPNSVISTTPNDMSNWARLTSLWPLLYGTSCCSIEFASLIGSRFDFDRYGLVP 123

Query: 87  RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRG 145
           R+SPRQ+D++I AGT+T KMA +L R+Y+QMPEPRYVI+MG+C   GG +   SYS VRG
Sbjct: 124 RSSPRQADLIITAGTVTMKMAPSLVRLYEQMPEPRYVIAMGACTITGGMFSTDSYSTVRG 183

Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
            D+++PVD+Y+PGCPP  E +I  I  L++KI R
Sbjct: 184 VDKLIPVDVYLPGCPPKPEVIIDAITKLREKIAR 217


>gi|114054388|gb|ABI49782.1| NADH-plastoquinone oxidoreductase subunit K [Platanus occidentalis]
          Length = 285

 Score =  154 bits (390), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 69/147 (46%), Positives = 101/147 (68%), Gaps = 1/147 (0%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
           T    + T+ + L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPRQ+
Sbjct: 73  TQNSVISTTPNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 132

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152
           D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++PV
Sbjct: 133 DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 192

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179
           D+Y+PGCPP  EA+I  I  L+KK+ R
Sbjct: 193 DVYLPGCPPKPEAVIDAITKLRKKVSR 219


>gi|21672438|ref|NP_660505.1| NADH dehydrogenase subunit B [Buchnera aphidicola str. Sg
           (Schizaphis graminum)]
 gi|25008859|sp|Q8K9Y6|NUOB_BUCAP RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|21623050|gb|AAM67716.1| NADH dehydrogenase I chain B [Buchnera aphidicola str. Sg
           (Schizaphis graminum)]
          Length = 223

 Score =  154 bits (389), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 76/142 (53%), Positives = 99/142 (69%), Gaps = 2/142 (1%)

Query: 37  GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95
           G +   + ++V W R  SL    FGL+CC VEM+ A    +D+ RFG    RASPRQ+DV
Sbjct: 39  GKVTKLLHKIVNWGRKNSLWPYNFGLSCCYVEMVTAFTSVHDVARFGSEVLRASPRQADV 98

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
           M++AGT   KMA  ++R+YDQM EP++VISMG+CAN GG Y   YSVV+G D+ +PVDIY
Sbjct: 99  MVIAGTPFIKMAPVIQRLYDQMLEPKWVISMGACANSGGMYDI-YSVVQGVDKFLPVDIY 157

Query: 156 VPGCPPTAEALIYGILLLQKKI 177
           +PGCPP  EA I+ + LLQK I
Sbjct: 158 IPGCPPRPEAYIHALTLLQKTI 179


>gi|212550775|ref|YP_002309092.1| NADH dehydrogenase I subunit B [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
 gi|238065056|sp|B6YR59|NUOB_AZOPC RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|212549013|dbj|BAG83681.1| NADH dehydrogenase I subunit B [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
          Length = 191

 Score =  154 bits (389), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 66/140 (47%), Positives = 97/140 (69%), Gaps = 1/140 (0%)

Query: 40  VTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APRASPRQSDVMIV 98
           +  ++ L+ W R+ S+  +TF  +CC +E M     RYD  RFG+   R SPRQ+DV+  
Sbjct: 28  IAKLNDLINWGRSNSVWPLTFATSCCGIEFMCLGAARYDFARFGWEVTRNSPRQADVVFC 87

Query: 99  AGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPG 158
            GT+ +KMA  L+R+YDQM EP+YVI++GSCA  GG +  SY  + G D+I+PVD+Y+PG
Sbjct: 88  CGTIVHKMAPVLKRLYDQMSEPKYVIALGSCAISGGPFKSSYHTIMGIDKIIPVDVYIPG 147

Query: 159 CPPTAEALIYGILLLQKKIR 178
           CPP  +A+IYG++ L +KI+
Sbjct: 148 CPPRPDAMIYGMIQLARKIK 167


>gi|154795224|ref|YP_054635.2| NADH dehydrogenase subunit K [Saccharum officinarum]
 gi|154795225|ref|YP_899411.2| NADH-plastoquinone oxidoreductase subunit K [Sorghum bicolor]
 gi|154795226|ref|NP_043029.2| NADH dehydrogenase subunit K [Zea mays]
 gi|154795254|ref|YP_024383.2| NADH dehydrogenase subunit K [Saccharum hybrid cultivar SP-80-3280]
 gi|242057527|ref|XP_002457909.1| hypothetical protein SORBIDRAFT_03g020200 [Sorghum bicolor]
 gi|218511709|sp|Q6L395|NDHK_SACHY RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
 gi|218511710|sp|Q6ENV9|NDHK_SACOF RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
 gi|218527954|sp|A1E9S8|NDHK_SORBI RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
 gi|241929884|gb|EES03029.1| hypothetical protein SORBIDRAFT_03g020200 [Sorghum bicolor]
          Length = 227

 Score =  154 bits (389), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 68/149 (45%), Positives = 102/149 (68%), Gaps = 1/149 (0%)

Query: 32  EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPR 91
           + +    + T+ + L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPR
Sbjct: 11  QTSSNSVISTTPNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPR 70

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIV 150
           Q+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++
Sbjct: 71  QADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLI 130

Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           PVD+Y+PGCPP  EA+I  +  L+KKI R
Sbjct: 131 PVDVYLPGCPPKPEAVIDALTKLRKKIAR 159


>gi|15616775|ref|NP_239987.1| NADH dehydrogenase subunit B [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
 gi|219681530|ref|YP_002467915.1| NADH dehydrogenase beta subunit [Buchnera aphidicola str. 5A
           (Acyrthosiphon pisum)]
 gi|219682086|ref|YP_002468470.1| NADH dehydrogenase beta subunit [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
 gi|257471211|ref|ZP_05635210.1| NADH dehydrogenase subunit B [Buchnera aphidicola str. LSR1
           (Acyrthosiphon pisum)]
 gi|11133957|sp|P57253|NUOB_BUCAI RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|238055274|sp|B8D8V6|NUOB_BUCA5 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|238055275|sp|B8D760|NUOB_BUCAT RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|25299001|pir||A84948 NADH2 dehydrogenase (ubiquinone) (EC 1.6.5.3) chain B [imported] -
           Buchnera sp. (strain APS)
 gi|10038838|dbj|BAB12873.1| NADH dehydrogenase I chain B [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
 gi|219621819|gb|ACL29975.1| NADH dehydrogenase beta subunit [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
 gi|219624373|gb|ACL30528.1| NADH dehydrogenase beta subunit [Buchnera aphidicola str. 5A
           (Acyrthosiphon pisum)]
 gi|311085897|gb|ADP65979.1| NADH dehydrogenase subunit B [Buchnera aphidicola str. LL01
           (Acyrthosiphon pisum)]
 gi|311086470|gb|ADP66551.1| NADH dehydrogenase subunit B [Buchnera aphidicola str. TLW03
           (Acyrthosiphon pisum)]
 gi|311087051|gb|ADP67131.1| NADH dehydrogenase subunit B [Buchnera aphidicola str. JF99
           (Acyrthosiphon pisum)]
 gi|311087610|gb|ADP67689.1| NADH dehydrogenase subunit B [Buchnera aphidicola str. JF98
           (Acyrthosiphon pisum)]
          Length = 224

 Score =  154 bits (389), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 78/163 (47%), Positives = 104/163 (63%), Gaps = 2/163 (1%)

Query: 18  SLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRY 77
           ++E V         +    G +   + +LV W R  SL    FGL+CC VEM+ A    +
Sbjct: 21  TIESVSDPLEEYLKKNIFMGKITQLLHKLVNWGRKNSLWPYNFGLSCCYVEMVSAFTSVH 80

Query: 78  DLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY 136
           D+ RFG    RASPRQ+DVM++AGT   KMA  ++R+YDQM EP++VISMG+CAN GG Y
Sbjct: 81  DVARFGSEVLRASPRQADVMVIAGTPFIKMAPVIQRLYDQMLEPKWVISMGACANSGGMY 140

Query: 137 HYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
              YSVV+G D+ +PVDIY+PGCPP  EA +  ++LLQK I  
Sbjct: 141 DI-YSVVQGVDKFLPVDIYIPGCPPRPEAYMQALILLQKLINE 182


>gi|148668050|gb|ABR01434.1| NADH-plastoquinone oxidoreductase subunit K [Dioscorea
           elephantipes]
          Length = 247

 Score =  154 bits (389), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 69/149 (46%), Positives = 101/149 (67%), Gaps = 1/149 (0%)

Query: 32  EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPR 91
           + T    + T+ + L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPR
Sbjct: 33  QTTPNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPR 92

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIV 150
           Q+D+++ AGT+T KMA +L R+Y+QM EP+YVI+MG+C   GG +   SYS VRG D+++
Sbjct: 93  QADLILTAGTVTMKMAPSLVRLYEQMAEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLI 152

Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           PVD+Y+PGCPP  EA+I  I  L+KKI R
Sbjct: 153 PVDVYLPGCPPKPEAVIDAITKLRKKISR 181


>gi|290489728|gb|ADD31248.1| NADH-plastoquinone oxidoreductase subunit K protein [Cornus
           florida]
          Length = 252

 Score =  154 bits (389), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 69/147 (46%), Positives = 101/147 (68%), Gaps = 1/147 (0%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
           T    + T+ + L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPRQ+
Sbjct: 40  TPNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 99

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152
           D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++PV
Sbjct: 100 DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 159

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179
           D+Y+PGCPP  EA+I  I  L+KKI +
Sbjct: 160 DVYLPGCPPKPEAVIDAITKLRKKISQ 186


>gi|20090355|ref|NP_616430.1| F(420)H(2) dehydrogenase, subunit FpoB [Methanosarcina acetivorans
           C2A]
 gi|19915360|gb|AAM04910.1| F(420)H(2) dehydrogenase, subunit FpoB [Methanosarcina acetivorans
           C2A]
          Length = 184

 Score =  154 bits (389), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 65/138 (47%), Positives = 93/138 (67%)

Query: 41  TSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAG 100
           T    L+ W R  SL +MT  + CC VEM+      YD +RFG  PR SPR +DVMI++G
Sbjct: 38  TKAQDLINWGRKNSLWFMTQPMGCCGVEMIATGCAHYDTDRFGIIPRNSPRHADVMIISG 97

Query: 101 TLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCP 160
            +T K   AL+R+++QMP P++VI+MG C+  GG ++ SYS V+  D + P+D+++PGCP
Sbjct: 98  YVTKKYLPALKRLWEQMPAPKWVIAMGDCSISGGPFYESYSTVQNIDELFPIDVFIPGCP 157

Query: 161 PTAEALIYGILLLQKKIR 178
           P  EALI G + LQ+KI+
Sbjct: 158 PRPEALIQGFVELQEKIK 175


>gi|301061312|ref|ZP_07202094.1| NADH dehydrogenase, C subunit [delta proteobacterium NaphS2]
 gi|300444631|gb|EFK08614.1| NADH dehydrogenase, C subunit [delta proteobacterium NaphS2]
          Length = 484

 Score =  154 bits (389), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 71/141 (50%), Positives = 102/141 (72%), Gaps = 2/141 (1%)

Query: 39  LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMI 97
           +++  D ++ WAR  S   M FGL+CC +E M     RYD+ RFG    R +PRQ+D++I
Sbjct: 11  VISMADDVINWARQYSFWPMFFGLSCCFIEQMVTYTSRYDISRFGAEVLRGTPRQADLLI 70

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
            +GT+  K+A  + R+Y+QMPEP++V+SMGSC+N GG Y   YSVV+G D+I+PVDIY+P
Sbjct: 71  TSGTIFKKIAPVVLRLYEQMPEPKWVMSMGSCSNCGGMYDV-YSVVQGIDQILPVDIYIP 129

Query: 158 GCPPTAEALIYGILLLQKKIR 178
           GCPP  EA++ G+ LLQKK++
Sbjct: 130 GCPPRPEAVLQGLTLLQKKVK 150


>gi|168700846|ref|ZP_02733123.1| NADH-quinone oxidoreductase, B subunit [Gemmata obscuriglobus UQM
           2246]
          Length = 201

 Score =  154 bits (389), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 74/147 (50%), Positives = 101/147 (68%), Gaps = 2/147 (1%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APRASPRQSDVM 96
           F++  +D L   AR  SL  M F  ACC +E+M  +  RYD+ RFG  A R SPRQ DVM
Sbjct: 10  FMIAPLDYLANMARKHSLWPMPFATACCGIELMATASSRYDIARFGSEAMRFSPRQCDVM 69

Query: 97  IVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV 156
           IVAG +  KM   ++R++ QMPEP++ ISMG+CA+ GG +  +Y+VV+G DR +PVD+YV
Sbjct: 70  IVAGRVAMKMVPVMQRIWLQMPEPKWCISMGACASSGGVFD-TYAVVQGIDRFIPVDVYV 128

Query: 157 PGCPPTAEALIYGILLLQKKIRRVGNV 183
           PGCPP  E LI  +L LQ+KI++ G +
Sbjct: 129 PGCPPRPEQLIRAVLDLQEKIQKTGTI 155


>gi|116747649|ref|YP_844336.1| NADH-quinone oxidoreductase subunit B [Syntrophobacter fumaroxidans
           MPOB]
 gi|116696713|gb|ABK15901.1| NADH-quinone oxidoreductase, B subunit [Syntrophobacter
           fumaroxidans MPOB]
          Length = 176

 Score =  154 bits (389), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 79/154 (51%), Positives = 105/154 (68%), Gaps = 5/154 (3%)

Query: 27  SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP 86
           +R++ E     F V  ++ ++  AR  SL  MTFGLACCA+EMM A   R+DL+RFG   
Sbjct: 5   NRVAPEEPAIQFAV--LEDILNLARANSLWPMTFGLACCAIEMMAAGASRFDLDRFGAGV 62

Query: 87  -RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS--YSVV 143
            R SPRQSD+MIVAGT++ KM  A++ ++DQMP P++ I+MG+CA  GG + Y   Y++V
Sbjct: 63  FRPSPRQSDLMIVAGTISKKMGPAVQMLWDQMPNPKWCIAMGNCAISGGPFEYEGQYAIV 122

Query: 144 RGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
            G   IVPVDI++PGCPP  EALI G L L  KI
Sbjct: 123 PGAHLIVPVDIFIPGCPPRPEALIQGFLALGDKI 156


>gi|239905979|ref|YP_002952718.1| NADH-quinone oxidoreductase chain B/C/D [Desulfovibrio magneticus
           RS-1]
 gi|239795843|dbj|BAH74832.1| NADH-quinone oxidoreductase chain B/C/D [Desulfovibrio magneticus
           RS-1]
          Length = 793

 Score =  154 bits (389), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 74/140 (52%), Positives = 99/140 (70%), Gaps = 2/140 (1%)

Query: 39  LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMI 97
           L    D ++ WAR  SL    FGL+CC VE   A  PRYD+ RFG    R SPRQ+DV+I
Sbjct: 8   LFRPADAVINWARKNSLWPFFFGLSCCFVEEATAWGPRYDIARFGSEVFRGSPRQADVLI 67

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           V+GT+  K+A    ++Y+QM +P++VISMGSC+N GG Y   YSVV+G D+I+P+D+Y+P
Sbjct: 68  VSGTMFKKIAPVALQLYEQMSDPKWVISMGSCSNSGGMYDV-YSVVQGSDQILPIDVYIP 126

Query: 158 GCPPTAEALIYGILLLQKKI 177
           GCPP  EA+  G++LLQKKI
Sbjct: 127 GCPPRPEAVFEGLMLLQKKI 146


>gi|189162275|ref|YP_001936521.1| NADH dehydrogenase subunit K [Fagopyrum esculentum subsp.
           ancestrale]
 gi|166065361|gb|ABY79736.1| NADH dehydrogenase subunit K [Fagopyrum esculentum subsp.
           ancestrale]
          Length = 285

 Score =  154 bits (388), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 70/146 (47%), Positives = 101/146 (69%), Gaps = 1/146 (0%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           IT    + T+ + L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPRQ
Sbjct: 72  ITPNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQ 131

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVP 151
           +D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++P
Sbjct: 132 ADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIP 191

Query: 152 VDIYVPGCPPTAEALIYGILLLQKKI 177
           VD+Y+PGCPP  EA+I  I  L+KKI
Sbjct: 192 VDVYLPGCPPKPEAVIDAITKLRKKI 217


>gi|154795252|ref|YP_001294356.2| NADH dehydrogenase subunit K [Dioscorea elephantipes]
 gi|218527899|sp|A6MML1|NDHK_DIOEL RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
          Length = 225

 Score =  154 bits (388), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 69/149 (46%), Positives = 101/149 (67%), Gaps = 1/149 (0%)

Query: 32  EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPR 91
           + T    + T+ + L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPR
Sbjct: 11  QTTPNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPR 70

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIV 150
           Q+D+++ AGT+T KMA +L R+Y+QM EP+YVI+MG+C   GG +   SYS VRG D+++
Sbjct: 71  QADLILTAGTVTMKMAPSLVRLYEQMAEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLI 130

Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           PVD+Y+PGCPP  EA+I  I  L+KKI R
Sbjct: 131 PVDVYLPGCPPKPEAVIDAITKLRKKISR 159


>gi|229577758|ref|YP_002836094.1| NADH-plastoquinone oxidoreductase subunit K [Megaleranthis
           saniculifolia]
 gi|226933886|gb|ACO92019.1| NADH-plastoquinone oxidoreductase subunit K [Megaleranthis
           saniculifolia]
          Length = 217

 Score =  154 bits (388), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 68/142 (47%), Positives = 100/142 (70%), Gaps = 1/142 (0%)

Query: 39  LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIV 98
           + T+ + L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPRQ+D+++ 
Sbjct: 20  ISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILT 79

Query: 99  AGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPVDIYVP 157
           AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++PVD+Y+P
Sbjct: 80  AGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLP 139

Query: 158 GCPPTAEALIYGILLLQKKIRR 179
           GCPP  EA+I  I  L+KK+ R
Sbjct: 140 GCPPKPEAVIDAITKLRKKVSR 161


>gi|167042391|gb|ABZ07118.1| putative NADH ubiquinone oxidoreductase, 20 Kd subunit [uncultured
           marine crenarchaeote HF4000_ANIW97P9]
          Length = 185

 Score =  154 bits (388), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 77/135 (57%), Positives = 95/135 (70%), Gaps = 1/135 (0%)

Query: 47  VTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR-ASPRQSDVMIVAGTLTNK 105
           + W R  SL  +    ACC+VE   AS PRYD+ERFG      S RQ D+++V GT+T K
Sbjct: 48  INWGRLWSLWPVHIETACCSVEFGAASGPRYDVERFGIIEAFGSLRQCDLVVVQGTITRK 107

Query: 106 MASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEA 165
           MA  LR VYDQMPEP+YVI+MG+CA  GG Y  SY+V+ G D I+PVD+YVPGCPP  E 
Sbjct: 108 MAPRLRLVYDQMPEPKYVIAMGACAITGGLYFDSYNVLPGIDGILPVDVYVPGCPPRPET 167

Query: 166 LIYGILLLQKKIRRV 180
           LI G LLLQ+KI+R+
Sbjct: 168 LIQGCLLLQEKIKRM 182


>gi|122211719|sp|Q32RI3|NDHK_ZYGCR RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
 gi|61393680|gb|AAX45822.1| 27 kDa subunit of NADH-ubiquinone oxidoreductase [Zygnema
           circumcarinatum]
          Length = 255

 Score =  154 bits (388), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 66/144 (45%), Positives = 101/144 (70%), Gaps = 1/144 (0%)

Query: 35  HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSD 94
           +   ++T++  +  W R  SL  + +G +CC +E       R+D +R+G  PR+SPRQ+D
Sbjct: 18  YDSVVLTTLQDVSNWVRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQAD 77

Query: 95  VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPVD 153
           ++I AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++PVD
Sbjct: 78  LIITAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVD 137

Query: 154 IYVPGCPPTAEALIYGILLLQKKI 177
           +Y+PGCPP  EA++  I+ L+KK+
Sbjct: 138 VYLPGCPPKPEAIVDAIIKLRKKV 161


>gi|220908787|ref|YP_002484098.1| NADH dehydrogenase subunit B [Cyanothece sp. PCC 7425]
 gi|238065000|sp|B8HQR6|NDHK1_CYAP4 RecName: Full=NAD(P)H-quinone oxidoreductase subunit K 1; AltName:
           Full=NAD(P)H dehydrogenase I subunit K 1; AltName:
           Full=NDH-1 subunit K 1; Short=NDH-K 1
 gi|219865398|gb|ACL45737.1| NADH-quinone oxidoreductase, B subunit [Cyanothece sp. PCC 7425]
          Length = 238

 Score =  154 bits (388), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 69/144 (47%), Positives = 101/144 (70%), Gaps = 1/144 (0%)

Query: 35  HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSD 94
            +  ++TS++ + +W R  SL  + +G ACC +E       R+D +RFG  PR SPRQ+D
Sbjct: 25  QENIILTSLNDVYSWCRLSSLWPLMYGTACCFIEFAAMIGSRFDFDRFGLVPRCSPRQAD 84

Query: 95  VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPVD 153
           ++I AGT+T KMA AL ++Y+QMPEP+YVI+MG+C   GG +   S + VRG D+++PVD
Sbjct: 85  LLITAGTITMKMAPALVKLYEQMPEPKYVIAMGACTITGGMFSTDSPTAVRGVDKLIPVD 144

Query: 154 IYVPGCPPTAEALIYGILLLQKKI 177
           IY+PGCPP  EA++  I+ L+KKI
Sbjct: 145 IYLPGCPPRPEAIMDAIVKLRKKI 168


>gi|154795232|ref|YP_636543.2| NADH dehydrogenase subunit K [Zygnema circumcarinatum]
          Length = 248

 Score =  154 bits (388), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 66/144 (45%), Positives = 101/144 (70%), Gaps = 1/144 (0%)

Query: 35  HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSD 94
           +   ++T++  +  W R  SL  + +G +CC +E       R+D +R+G  PR+SPRQ+D
Sbjct: 11  YDSVVLTTLQDVSNWVRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQAD 70

Query: 95  VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPVD 153
           ++I AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++PVD
Sbjct: 71  LIITAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVD 130

Query: 154 IYVPGCPPTAEALIYGILLLQKKI 177
           +Y+PGCPP  EA++  I+ L+KK+
Sbjct: 131 VYLPGCPPKPEAIVDAIIKLRKKV 154


>gi|116749375|ref|YP_846062.1| trifunctional NADH dehydrogenase I subunit B/C/D [Syntrophobacter
           fumaroxidans MPOB]
 gi|218534237|sp|A0LJM5|NUBCD_SYNFM RecName: Full=NADH-quinone oxidoreductase subunit B/C/D; AltName:
           Full=NADH dehydrogenase I subunit B/C/D; AltName:
           Full=NDH-1 subunit B/C/D
 gi|116698439|gb|ABK17627.1| NADH dehydrogenase I, D subunit [Syntrophobacter fumaroxidans MPOB]
          Length = 787

 Score =  153 bits (387), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 74/140 (52%), Positives = 103/140 (73%), Gaps = 2/140 (1%)

Query: 39  LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMI 97
            +++ D ++ W+R  SL  + FGL+CC VE   A  PRYD+ RFG    R SPRQ+D++I
Sbjct: 5   FLSAADFVLNWSRKYSLWPLFFGLSCCFVEEATAFTPRYDMARFGAEVLRPSPRQADLLI 64

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           V+GT+  K+A  + R+Y+QM EP++VISMGSC+N GG Y   YSVV+G D+I+PVD+Y+P
Sbjct: 65  VSGTVFKKIAPVVLRLYEQMAEPKWVISMGSCSNCGGMYDV-YSVVQGIDQILPVDVYIP 123

Query: 158 GCPPTAEALIYGILLLQKKI 177
           GCPP  EA++ G+ LLQKKI
Sbjct: 124 GCPPRPEAVLQGLTLLQKKI 143


>gi|68565803|sp|Q85FL6|NDHK_ADICA RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
 gi|48476003|gb|AAP29396.2| NADH dehydrogenase subunit K [Adiantum capillus-veneris]
          Length = 250

 Score =  153 bits (387), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 72/165 (43%), Positives = 107/165 (64%), Gaps = 6/165 (3%)

Query: 21  KVDADFSRISSEITHKG-----FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMP 75
           K +  FS   S++  +G       + S+     W+R  SL  + +G +CC +E       
Sbjct: 19  KGEDSFSNSMSKLPLQGGMSDSIFMASISDFSNWSRLSSLWPLLYGTSCCFIEFASLIGS 78

Query: 76  RYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY 135
           R+D +R+G  PR+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG 
Sbjct: 79  RFDFDRYGLVPRSSPRQADLIVTAGTITMKMAPSLIRLYEQMPEPKYVIAMGACTITGGM 138

Query: 136 YHY-SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           +   SYS VRG D+++PVDIY+PGCPP  EA++  +  L+KKI R
Sbjct: 139 FSTDSYSTVRGVDKLIPVDIYLPGCPPKPEAIMDAVTKLRKKIAR 183


>gi|161527785|ref|YP_001581611.1| NADH-quinone oxidoreductase subunit B [Nitrosopumilus maritimus
           SCM1]
 gi|160339086|gb|ABX12173.1| NADH-quinone oxidoreductase, B subunit [Nitrosopumilus maritimus
           SCM1]
          Length = 174

 Score =  153 bits (386), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 75/135 (55%), Positives = 95/135 (70%), Gaps = 1/135 (0%)

Query: 47  VTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR-ASPRQSDVMIVAGTLTNK 105
           + W R  SL  +    ACC+VE   AS PRYD+ERFG      S RQ D+++V GT+T K
Sbjct: 34  INWGRIWSLWPVHIETACCSVEFGAASSPRYDVERFGIIEAFGSLRQCDLVVVQGTITRK 93

Query: 106 MASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEA 165
           MA  LR VYDQMPEP+YVI+MG+CA  GG Y  SY+V+ G D ++PVD+YVPGCPP  E 
Sbjct: 94  MAPRLRLVYDQMPEPKYVIAMGACAITGGLYFDSYNVLPGIDGVIPVDVYVPGCPPRPET 153

Query: 166 LIYGILLLQKKIRRV 180
           LI G +LLQ+KI+R+
Sbjct: 154 LIQGCILLQEKIKRM 168


>gi|118474832|ref|YP_891363.1| NADH-quinone oxidoreductase chain b [Campylobacter fetus subsp.
           fetus 82-40]
 gi|238055277|sp|A0RMD0|NUOB_CAMFF RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|118414058|gb|ABK82478.1| NADH-quinone oxidoreductase chain b [Campylobacter fetus subsp.
           fetus 82-40]
          Length = 168

 Score =  153 bits (386), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 71/148 (47%), Positives = 100/148 (67%), Gaps = 2/148 (1%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RAS 89
             +     ++T +D L  W R  SL  M FG ACCA+E M A   ++DL RFG    R S
Sbjct: 4   ENLVQNDVVLTRLDALFNWGRKNSLWPMIFGTACCAIEFMSAVSSKHDLSRFGAEVMRFS 63

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQ+D+MI+AGT++ K A  L+ +YDQM EP++V+SMG+CA  GG+Y  +Y+ ++G D+I
Sbjct: 64  PRQADLMIIAGTISFKQAPILKEIYDQMCEPKWVVSMGACACSGGFYD-NYTTLQGIDQI 122

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKI 177
           +PVD+Y+ GCPP  EA+I  IL +Q KI
Sbjct: 123 IPVDVYISGCPPRPEAIIDAILAIQDKI 150


>gi|296274177|ref|YP_003656808.1| NADH-quinone oxidoreductase subunit B [Arcobacter nitrofigilis DSM
           7299]
 gi|296098351|gb|ADG94301.1| NADH-quinone oxidoreductase, B subunit [Arcobacter nitrofigilis DSM
           7299]
          Length = 171

 Score =  153 bits (386), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 70/139 (50%), Positives = 101/139 (72%), Gaps = 2/139 (1%)

Query: 39  LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APRASPRQSDVMI 97
           + T +D+ V WAR+ SL  M FG ACC +E M  +  +YD+ RFG    R SPRQ+D++I
Sbjct: 14  ITTRLDKAVNWARSYSLWPMVFGTACCGIEFMSVAAAKYDISRFGAEVVRFSPRQADLLI 73

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           +AGT+T K A  L+++YDQM EP++VISMG+CA+ GG+Y  +Y+ ++G D+I+PVD YV 
Sbjct: 74  IAGTITYKQAPVLKKIYDQMCEPKWVISMGACASSGGFYD-NYTTLQGVDQIIPVDEYVS 132

Query: 158 GCPPTAEALIYGILLLQKK 176
           GCPP  EA++  I+ +QKK
Sbjct: 133 GCPPRPEAVLDAIISIQKK 151


>gi|313183997|ref|YP_004021154.1| NADH-plastoquinone oxidoreductase subunit K [Castanea mollissima]
 gi|309321524|gb|ADO65064.1| NADH-plastoquinone oxidoreductase subunit K [Castanea mollissima]
          Length = 255

 Score =  153 bits (386), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 67/140 (47%), Positives = 99/140 (70%), Gaps = 1/140 (0%)

Query: 41  TSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAG 100
           T+ + L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPRQ+D+++ AG
Sbjct: 47  TTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAG 106

Query: 101 TLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPVDIYVPGC 159
           T+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SY+ VRG D+++PVD+Y+PGC
Sbjct: 107 TVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYTTVRGVDKLIPVDVYLPGC 166

Query: 160 PPTAEALIYGILLLQKKIRR 179
           PP  EA+I  I  L+KK+ R
Sbjct: 167 PPKPEAVIDAITKLRKKLSR 186


>gi|290489744|gb|ADD31256.1| NADH-plastoquinone oxidoreductase subunit K protein [Quercus nigra]
          Length = 230

 Score =  153 bits (386), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 67/140 (47%), Positives = 99/140 (70%), Gaps = 1/140 (0%)

Query: 41  TSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAG 100
           T+ + L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPRQ+D+++ AG
Sbjct: 22  TTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAG 81

Query: 101 TLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPVDIYVPGC 159
           T+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SY+ VRG D+++PVD+Y+PGC
Sbjct: 82  TVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYTTVRGVDKLIPVDVYLPGC 141

Query: 160 PPTAEALIYGILLLQKKIRR 179
           PP  EA+I  I  L+KK+ R
Sbjct: 142 PPKPEAVIDAITKLRKKLSR 161


>gi|218527892|sp|A6MMC6|NDHK_CHLSC RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
          Length = 222

 Score =  153 bits (386), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 67/142 (47%), Positives = 100/142 (70%), Gaps = 1/142 (0%)

Query: 39  LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIV 98
           + T+ + L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPRQ+D+++ 
Sbjct: 18  ISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILT 77

Query: 99  AGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPVDIYVP 157
           AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++PVD+Y+P
Sbjct: 78  AGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLP 137

Query: 158 GCPPTAEALIYGILLLQKKIRR 179
           GCPP  EA+I  I  L+K++ R
Sbjct: 138 GCPPKPEAVIDAITKLRKRVSR 159


>gi|183220687|ref|YP_001838683.1| NADH dehydrogenase subunit B [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
 gi|189910788|ref|YP_001962343.1| NADH dehydrogenase subunit B [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|238065164|sp|B0SFT5|NUOB_LEPBA RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|238065165|sp|B0SP83|NUOB_LEPBP RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|167775464|gb|ABZ93765.1| NADH dehydrogenase (ubiquinone), B chain [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Ames)']
 gi|167779109|gb|ABZ97407.1| NADH-quinone oxidoreductase chain B [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Paris)']
          Length = 186

 Score =  152 bits (385), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 70/145 (48%), Positives = 103/145 (71%), Gaps = 2/145 (1%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQSDVM 96
           F V ++D +V W ++ SL    F  ACC +E M  +   YD+ RFG   P  SPRQ+D++
Sbjct: 18  FQVATLDNVVQWGQSFSLWPYPFATACCGIEYMSTACADYDIARFGAERPSFSPRQADMI 77

Query: 97  IVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV 156
           +V GT+T KMA  LR++YDQ+ EP++VIS+G+CA+ GG +H +Y V++G DRI+PVD+YV
Sbjct: 78  LVLGTITYKMAPVLRQIYDQLAEPKFVISVGACASSGGMFH-TYGVLQGVDRILPVDVYV 136

Query: 157 PGCPPTAEALIYGILLLQKKIRRVG 181
           PGCPP  EA++  ++ LQKK++  G
Sbjct: 137 PGCPPRPEAILDALVKLQKKVQSQG 161


>gi|239907416|ref|YP_002954157.1| NADH-quinone oxidoreductase chain B [Desulfovibrio magneticus RS-1]
 gi|239797282|dbj|BAH76271.1| NADH-quinone oxidoreductase chain B [Desulfovibrio magneticus RS-1]
          Length = 176

 Score =  152 bits (385), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 73/139 (52%), Positives = 102/139 (73%), Gaps = 3/139 (2%)

Query: 42  SVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAG 100
           +V +LV   R  S+  MTFGLACCA+EMM   M R+D+ R+G    R SPRQSD+MIVAG
Sbjct: 24  AVQKLVDVCRAMSIWPMTFGLACCAIEMMAVGMARFDIARYGAEVFRPSPRQSDLMIVAG 83

Query: 101 TLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS--YSVVRGCDRIVPVDIYVPG 158
           T+  KMA A+ R+Y+QMP PRYV+++G+CA  GG ++    Y+V++G D ++PVD+YVPG
Sbjct: 84  TVNKKMAPAVVRLYEQMPAPRYVMALGNCAISGGPFNIENQYNVIQGVDTLIPVDVYVPG 143

Query: 159 CPPTAEALIYGILLLQKKI 177
           CPP  EAL+ G+  +Q+K+
Sbjct: 144 CPPRPEALLEGLFAIQEKM 162


>gi|317153001|ref|YP_004121049.1| NADH-quinone oxidoreductase subunit B [Desulfovibrio aespoeensis
           Aspo-2]
 gi|316943252|gb|ADU62303.1| NADH-quinone oxidoreductase, B subunit [Desulfovibrio aespoeensis
           Aspo-2]
          Length = 181

 Score =  152 bits (385), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 74/130 (56%), Positives = 96/130 (73%), Gaps = 3/130 (2%)

Query: 51  RTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASA 109
           R+ SL  MTFGLACCA+EMM   M R+D+ RFG    R SPRQSDVMIVAGT+T KMA A
Sbjct: 38  RSMSLWPMTFGLACCAIEMMATGMARFDMARFGAEVFRPSPRQSDVMIVAGTVTKKMAPA 97

Query: 110 LRRVYDQMPEPRYVISMGSCANGGGYYHY--SYSVVRGCDRIVPVDIYVPGCPPTAEALI 167
           + R+Y+QMP P++VI+MG+CA  GG +    +Y+V+ G D ++PVD+YVPGCPP  E L+
Sbjct: 98  VVRLYEQMPGPKWVIAMGNCAISGGPFKIKDNYNVIEGVDTLIPVDVYVPGCPPRPEGLL 157

Query: 168 YGILLLQKKI 177
            G   LQ++I
Sbjct: 158 EGFFQLQRQI 167


>gi|167044398|gb|ABZ09075.1| putative NADH ubiquinone oxidoreductase, 20 Kd subunit [uncultured
           marine crenarchaeote HF4000_APKG6D3]
          Length = 185

 Score =  152 bits (385), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 76/135 (56%), Positives = 95/135 (70%), Gaps = 1/135 (0%)

Query: 47  VTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR-ASPRQSDVMIVAGTLTNK 105
           + W R  SL  +    ACC+VE   AS PRYD+ERFG      S RQ D+++V GT+T K
Sbjct: 48  INWGRLWSLWPVHIETACCSVEFGAASGPRYDVERFGIIEAFGSLRQCDLVVVQGTITRK 107

Query: 106 MASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEA 165
           MA  LR VYDQMPEP+YVI+MG+CA  GG Y  SY+V+ G D I+PVD+YVPGCPP  E 
Sbjct: 108 MAPRLRLVYDQMPEPKYVIAMGACAITGGLYFDSYNVLPGIDGILPVDVYVPGCPPRPET 167

Query: 166 LIYGILLLQKKIRRV 180
           LI G +LLQ+KI+R+
Sbjct: 168 LIQGCILLQEKIKRM 182


>gi|329765844|ref|ZP_08257410.1| NADH-quinone oxidoreductase, B subunit [Candidatus Nitrosoarchaeum
           limnia SFB1]
 gi|329137687|gb|EGG41957.1| NADH-quinone oxidoreductase, B subunit [Candidatus Nitrosoarchaeum
           limnia SFB1]
          Length = 174

 Score =  152 bits (385), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 75/135 (55%), Positives = 95/135 (70%), Gaps = 1/135 (0%)

Query: 47  VTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR-ASPRQSDVMIVAGTLTNK 105
           + W R  SL  +    ACC+VE   AS PRYD+ERFG      S RQ D+++V GT+T K
Sbjct: 34  INWGRIWSLWPVHIETACCSVEFGAASSPRYDVERFGIIEAFGSLRQCDLIVVQGTITRK 93

Query: 106 MASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEA 165
           MA  LR VYDQMPEP+YVI+MG+CA  GG Y  SY+V+ G D ++PVD+YVPGCPP  E 
Sbjct: 94  MAPRLRLVYDQMPEPKYVIAMGACAITGGLYFDSYNVLPGIDGVLPVDVYVPGCPPRPET 153

Query: 166 LIYGILLLQKKIRRV 180
           LI G +LLQ+KI+R+
Sbjct: 154 LIQGCMLLQEKIKRM 168


>gi|154795228|ref|NP_848064.3| NADH dehydrogenase subunit K [Adiantum capillus-veneris]
          Length = 223

 Score =  152 bits (385), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 67/142 (47%), Positives = 98/142 (69%), Gaps = 1/142 (0%)

Query: 39  LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIV 98
            + S+     W+R  SL  + +G +CC +E       R+D +R+G  PR+SPRQ+D+++ 
Sbjct: 15  FMASISDFSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLIVT 74

Query: 99  AGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPVDIYVP 157
           AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++PVDIY+P
Sbjct: 75  AGTITMKMAPSLIRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDIYLP 134

Query: 158 GCPPTAEALIYGILLLQKKIRR 179
           GCPP  EA++  +  L+KKI R
Sbjct: 135 GCPPKPEAIMDAVTKLRKKIAR 156


>gi|91975807|ref|YP_568466.1| NADH-quinone oxidoreductase, B subunit [Rhodopseudomonas palustris
           BisB5]
 gi|123735640|sp|Q13BH4|NUOB1_RHOPS RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName:
           Full=NADH dehydrogenase I subunit B 1; AltName:
           Full=NDH-1 subunit B 1
 gi|91682263|gb|ABE38565.1| NADH-quinone oxidoreductase, B subunit [Rhodopseudomonas palustris
           BisB5]
          Length = 208

 Score =  152 bits (384), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 73/148 (49%), Positives = 103/148 (69%), Gaps = 2/148 (1%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RAS 89
            E   +  L T+++ L  W+R  SL    FGL+CC VE +    P YD  RFG    RAS
Sbjct: 18  EEHMARSNLFTTLEDLTAWSRKHSLWPFNFGLSCCYVEQVTVLTPVYDQARFGAEVIRAS 77

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQ+D+++V+GT+ +KMA+ L R+Y+QM  PR+VISMG+CAN GG Y   YSVV+G DR 
Sbjct: 78  PRQADLLVVSGTVFHKMAAPLLRLYEQMRAPRWVISMGACANSGGMYDI-YSVVQGVDRF 136

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKI 177
           +PVD+Y+PGCPP  EA++  +++LQ++I
Sbjct: 137 IPVDVYIPGCPPRPEAMLDALIMLQQQI 164


>gi|304312241|ref|YP_003811839.1| NADH dehydrogenase I, chain B [gamma proteobacterium HdN1]
 gi|301797974|emb|CBL46196.1| NADH dehydrogenase I, chain B [gamma proteobacterium HdN1]
          Length = 222

 Score =  152 bits (384), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 70/148 (47%), Positives = 105/148 (70%), Gaps = 2/148 (1%)

Query: 32  EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASP 90
           E   +  ++  ++++V+W+++ SL    FGL+CC VEM      ++DL RFG    R SP
Sbjct: 32  EALRQNVVMGKLEEMVSWSQSNSLWPFNFGLSCCYVEMATTFTSQFDLARFGAEVIRGSP 91

Query: 91  RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150
           RQ+D+++++GT+  KMA  L R+Y+Q+ EPR+VISMGSCAN GG Y   YSVV+G D+ +
Sbjct: 92  RQADLIVISGTVFRKMAPVLERLYEQLIEPRWVISMGSCANSGGMYDI-YSVVQGVDKFL 150

Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIR 178
           PVD+YV GCPP  +AL+ G++LLQ +I+
Sbjct: 151 PVDVYVQGCPPRPDALLEGLILLQNQIK 178


>gi|290489708|gb|ADD31238.1| NADH-plastoquinone oxidoreductase subunit K protein [Dillenia
           indica]
          Length = 251

 Score =  152 bits (384), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 68/140 (48%), Positives = 98/140 (70%), Gaps = 1/140 (0%)

Query: 41  TSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAG 100
           T+ + L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPRQ+D+++ AG
Sbjct: 46  TTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAG 105

Query: 101 TLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPVDIYVPGC 159
           T+T KMA +L R+Y+QM EP+YVI+MG+C   GG +   SYS VRG D+++PVD+Y+PGC
Sbjct: 106 TVTMKMAPSLVRLYEQMAEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGC 165

Query: 160 PPTAEALIYGILLLQKKIRR 179
           PP  EA+I  I  L+KKI R
Sbjct: 166 PPKPEAVIDAITKLRKKISR 185


>gi|149390272|ref|YP_001294102.1| NADH-plastoquinone oxidoreductase subunit K [Chloranthus spicatus]
 gi|146744192|gb|ABQ43264.1| NADH-plastoquinone oxidoreductase subunit K [Chloranthus spicatus]
          Length = 275

 Score =  152 bits (384), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 67/142 (47%), Positives = 100/142 (70%), Gaps = 1/142 (0%)

Query: 39  LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIV 98
           + T+ + L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPRQ+D+++ 
Sbjct: 71  ISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILT 130

Query: 99  AGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPVDIYVP 157
           AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++PVD+Y+P
Sbjct: 131 AGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLP 190

Query: 158 GCPPTAEALIYGILLLQKKIRR 179
           GCPP  EA+I  I  L+K++ R
Sbjct: 191 GCPPKPEAVIDAITKLRKRVSR 212


>gi|257453968|ref|ZP_05619244.1| NADH-quinone oxidoreductase subunit b [Enhydrobacter aerosaccus
           SK60]
 gi|257448633|gb|EEV23600.1| NADH-quinone oxidoreductase subunit b [Enhydrobacter aerosaccus
           SK60]
          Length = 220

 Score =  152 bits (384), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 83/175 (47%), Positives = 108/175 (61%), Gaps = 14/175 (8%)

Query: 18  SLEKVDADFSR--------ISSEITHKGFLVTSVDQLV----TWARTGSLMWMTFGLACC 65
           +L K + D  R        I  E  +K  ++T ++ L      W R  SL    FG +CC
Sbjct: 4   TLTKANPDADRFPDQTRQIIDEEEVNKNVVMTRLEDLTHSLANWGRKHSLWPFNFGTSCC 63

Query: 66  AVEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
            VE        +DL RFG    RASPRQ+DVMIVAGT   KMA  ++R+Y+QM EP++VI
Sbjct: 64  YVEYATTLTGVHDLSRFGAEVIRASPRQADVMIVAGTCFMKMAPVIQRLYEQMLEPKWVI 123

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           SMG+CAN GG Y   YSVV+G D+I+PVD+Y+PGCPP  EALI  I+LLQ+ I +
Sbjct: 124 SMGACANSGGMYDV-YSVVQGVDKIIPVDVYIPGCPPRPEALIQAIMLLQESITK 177


>gi|148653495|ref|YP_001280588.1| NADH dehydrogenase subunit B [Psychrobacter sp. PRwf-1]
 gi|238065199|sp|A5WG47|NUOB_PSYWF RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|148572579|gb|ABQ94638.1| NADH-quinone oxidoreductase, B subunit [Psychrobacter sp. PRwf-1]
          Length = 222

 Score =  152 bits (384), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 80/155 (51%), Positives = 100/155 (64%), Gaps = 5/155 (3%)

Query: 29  ISSEITHKGFLVTSVDQL---VTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA 85
           I  E+    F+    D +     W R  SL    FG +CC VE        +DL RFG  
Sbjct: 27  IEDEVNRNVFMGKLEDMVHASANWGRKNSLWPFNFGTSCCYVEYATTLTAVHDLSRFGAE 86

Query: 86  P-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR 144
             RASPRQ+DVMIVAGT   KMA  ++R+Y+QM EP++VISMGSCAN GG Y   YSVV+
Sbjct: 87  VIRASPRQADVMIVAGTCFVKMAPVIQRLYEQMLEPKWVISMGSCANSGGMYDI-YSVVQ 145

Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           G D+I+PVD+YVPGCPP  EALI G++LLQ+ I +
Sbjct: 146 GVDKIIPVDVYVPGCPPRPEALIQGLMLLQESITK 180


>gi|261416512|ref|YP_003250195.1| NADH-quinone oxidoreductase, B subunit [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|261372968|gb|ACX75713.1| NADH-quinone oxidoreductase, B subunit [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|302327904|gb|ADL27105.1| NADH-quinone oxidoreductase, B subunit [Fibrobacter succinogenes
           subsp. succinogenes S85]
          Length = 211

 Score =  152 bits (384), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 72/151 (47%), Positives = 99/151 (65%), Gaps = 2/151 (1%)

Query: 29  ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PR 87
           + +E      + +S+D LV W R+ SL    +G ACCA+E M   + RYDL R G    R
Sbjct: 1   MGNEAEKPNIITSSLDFLVNWGRSNSLWPFPYGTACCAIEFMSTEVGRYDLSRIGSEYVR 60

Query: 88  ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCD 147
            +PRQSDV++VAGT+T K A  L+R+Y+QM EPR+VI+MG+CA+ GG+Y   Y  V G D
Sbjct: 61  FTPRQSDVLLVAGTITYKQAPILKRIYEQMAEPRWVIAMGACASSGGFYD-CYCTVPGID 119

Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
            I+PVD+Y+ GCPP  EA    +  LQKK++
Sbjct: 120 HIIPVDVYIGGCPPRPEAFFDAMFDLQKKVK 150


>gi|133712065|gb|ABO36708.1| photosystem II G protein [Populus trichocarpa]
          Length = 237

 Score =  152 bits (384), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 68/142 (47%), Positives = 99/142 (69%), Gaps = 1/142 (0%)

Query: 39  LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIV 98
           + T+ + L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPRQ+D+++ 
Sbjct: 30  ISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILT 89

Query: 99  AGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPVDIYVP 157
           AGT+T KMA +L R+Y+QMPE +YVI+MG+C   GG +   SYS VRG D+++PVD+Y+P
Sbjct: 90  AGTVTMKMAPSLVRLYEQMPEQKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLP 149

Query: 158 GCPPTAEALIYGILLLQKKIRR 179
           GCPP  EA+I  I  L+KKI R
Sbjct: 150 GCPPKPEAIIDAITKLRKKISR 171


>gi|268591136|ref|ZP_06125357.1| NADH dehydrogenase I subunit B [Providencia rettgeri DSM 1131]
 gi|291313438|gb|EFE53891.1| NADH dehydrogenase I subunit B [Providencia rettgeri DSM 1131]
          Length = 224

 Score =  152 bits (383), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 75/142 (52%), Positives = 98/142 (69%), Gaps = 2/142 (1%)

Query: 37  GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95
           G L  ++  +V W R  SL    FGL+CC VEM+ +    +D+ RFG    RASPRQ+D 
Sbjct: 40  GKLSHALHDVVNWGRKNSLWPYNFGLSCCYVEMVTSFTAVHDVARFGAEVLRASPRQADF 99

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
           M+VAGT   KMA  ++R+YDQM EP++VISMGSCAN GG Y   YSVV+G D+ +PVD+Y
Sbjct: 100 MVVAGTCFTKMAPVIQRLYDQMLEPKWVISMGSCANSGGMYDI-YSVVQGVDKFIPVDVY 158

Query: 156 VPGCPPTAEALIYGILLLQKKI 177
           +PGCPP  EA +  +LLLQ+ I
Sbjct: 159 IPGCPPRPEAYMQALLLLQESI 180


>gi|183599635|ref|ZP_02961128.1| hypothetical protein PROSTU_03122 [Providencia stuartii ATCC 25827]
 gi|188021887|gb|EDU59927.1| hypothetical protein PROSTU_03122 [Providencia stuartii ATCC 25827]
          Length = 224

 Score =  152 bits (383), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 75/142 (52%), Positives = 98/142 (69%), Gaps = 2/142 (1%)

Query: 37  GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95
           G L  ++  +V W R  SL    FGL+CC VEM+ +    +D+ RFG    RASPRQ+D 
Sbjct: 40  GKLSHALHDVVNWGRKNSLWPYNFGLSCCYVEMVTSFTAVHDVARFGAEVLRASPRQADF 99

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
           M+VAGT   KMA  ++R+YDQM EP++VISMGSCAN GG Y   YSVV+G D+ +PVD+Y
Sbjct: 100 MVVAGTCFTKMAPVIQRLYDQMLEPKWVISMGSCANSGGMYDI-YSVVQGVDKFIPVDVY 158

Query: 156 VPGCPPTAEALIYGILLLQKKI 177
           +PGCPP  EA +  +LLLQ+ I
Sbjct: 159 IPGCPPRPEAYMQALLLLQESI 180


>gi|86609773|ref|YP_478535.1| NADH dehydrogenase subunit B [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|123501307|sp|Q2JJA9|NDHK_SYNJB RecName: Full=NAD(P)H-quinone oxidoreductase subunit K; AltName:
           Full=NAD(P)H dehydrogenase I subunit K; AltName:
           Full=NDH-1 subunit K; Short=NDH-K
 gi|86558315|gb|ABD03272.1| NADH-ubiquinone/plastoquinone oxidoreductase, K subunit
           [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 244

 Score =  152 bits (383), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 72/162 (44%), Positives = 106/162 (65%), Gaps = 4/162 (2%)

Query: 20  EKVDADFSRISSEIT---HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPR 76
           EK    F   + ++T       ++T+V+ L  WA+  SL  + +G ACC +E       R
Sbjct: 4   EKSQVLFPGAAPQVTTDLSNNVVLTTVNDLYNWAKMSSLWPLLYGTACCFIEFAAMLGSR 63

Query: 77  YDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY 136
           +D +RFG  PR+SPR +D++I AGT+T KMA AL ++Y QM EP+YVI+MG+C   GG +
Sbjct: 64  FDFDRFGLLPRSSPRTADLIITAGTVTMKMAPALVKLYQQMAEPKYVIAMGACTISGGMF 123

Query: 137 HY-SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
              SY+ VRG D+++PVD+Y+PGCPP  EA++  I+ L+KKI
Sbjct: 124 SSDSYTAVRGVDKLIPVDVYIPGCPPRPEAIMDAIVKLRKKI 165


>gi|212712277|ref|ZP_03320405.1| hypothetical protein PROVALCAL_03363 [Providencia alcalifaciens DSM
           30120]
 gi|212685023|gb|EEB44551.1| hypothetical protein PROVALCAL_03363 [Providencia alcalifaciens DSM
           30120]
          Length = 224

 Score =  152 bits (383), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 75/144 (52%), Positives = 99/144 (68%), Gaps = 2/144 (1%)

Query: 35  HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQS 93
           + G L  ++  +V W R  SL    FGL+CC VEM+ +    +D+ RFG    RASPRQ+
Sbjct: 38  YMGKLSHALHDVVNWGRKNSLWPYNFGLSCCYVEMVTSFTAVHDVARFGAEVLRASPRQA 97

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD 153
           D M+VAGT   KMA  ++R+YDQM EP++VISMGSCAN GG Y   YSVV+G D+ +PVD
Sbjct: 98  DFMVVAGTCFTKMAPVIQRLYDQMLEPKWVISMGSCANSGGMYDI-YSVVQGVDKFIPVD 156

Query: 154 IYVPGCPPTAEALIYGILLLQKKI 177
           +Y+PGCPP  EA +  +LLLQ+ I
Sbjct: 157 VYIPGCPPRPEAYMQALLLLQESI 180


>gi|225847872|ref|YP_002728035.1| NADH dehydrogenase subunit B [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225643594|gb|ACN98644.1| NADH-quinone oxidoreductase, b subunit [Sulfurihydrogenibium
           azorense Az-Fu1]
          Length = 172

 Score =  152 bits (383), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 73/140 (52%), Positives = 110/140 (78%), Gaps = 1/140 (0%)

Query: 35  HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSD 94
           + G ++T+V+++++W R  SL  ++ GLACCA+EMM  +  R+D +R G   R SPRQSD
Sbjct: 6   NSGIILTTVEEVLSWGRRNSLWPVSIGLACCAIEMMHTAASRFDTDRLGIIFRGSPRQSD 65

Query: 95  VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154
           V+IVAGT+ NK+A  L+ +Y+QMP+P++VISMG C++GGG +  +YS ++G DRI+PVD+
Sbjct: 66  VLIVAGTVVNKVAPMLKLIYEQMPDPKWVISMGGCSSGGGPFP-TYSTLQGVDRIIPVDV 124

Query: 155 YVPGCPPTAEALIYGILLLQ 174
           Y+PGCPPT +AL++GI+ LQ
Sbjct: 125 YIPGCPPTPQALLWGIMELQ 144


>gi|261346156|ref|ZP_05973800.1| NADH dehydrogenase I subunit B [Providencia rustigianii DSM 4541]
 gi|282565809|gb|EFB71344.1| NADH dehydrogenase I subunit B [Providencia rustigianii DSM 4541]
          Length = 224

 Score =  152 bits (383), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 75/144 (52%), Positives = 99/144 (68%), Gaps = 2/144 (1%)

Query: 35  HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQS 93
           + G L  ++  +V W R  SL    FGL+CC VEM+ +    +D+ RFG    RASPRQ+
Sbjct: 38  YMGKLSHALHDVVNWGRKNSLWPYNFGLSCCYVEMVTSFTSVHDVARFGAEVLRASPRQA 97

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD 153
           D M+VAGT   KMA  ++R+YDQM EP++VISMGSCAN GG Y   YSVV+G D+ +PVD
Sbjct: 98  DFMVVAGTCFTKMAPVIQRLYDQMLEPKWVISMGSCANSGGMYDI-YSVVQGVDKFIPVD 156

Query: 154 IYVPGCPPTAEALIYGILLLQKKI 177
           +Y+PGCPP  EA +  +LLLQ+ I
Sbjct: 157 VYIPGCPPRPEAYMQALLLLQESI 180


>gi|317492622|ref|ZP_07951049.1| NADH-quinone oxidoreductase [Enterobacteriaceae bacterium
           9_2_54FAA]
 gi|316919372|gb|EFV40704.1| NADH-quinone oxidoreductase [Enterobacteriaceae bacterium
           9_2_54FAA]
          Length = 224

 Score =  152 bits (383), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 74/142 (52%), Positives = 98/142 (69%), Gaps = 2/142 (1%)

Query: 37  GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95
           G L  ++  +V W R  SL    FGL+CC VEM+ +    +D+ RFG    RASPRQ+D 
Sbjct: 40  GKLENALHDMVNWGRKNSLWPYNFGLSCCYVEMVTSFTAVHDVARFGAEVLRASPRQADF 99

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
           M+VAGT   KMA  ++R+YDQM EP++VISMGSCAN GG Y   YSVV+G D+ +PVD+Y
Sbjct: 100 MVVAGTCFTKMAPVIQRLYDQMLEPKWVISMGSCANSGGMYDI-YSVVQGVDKFIPVDVY 158

Query: 156 VPGCPPTAEALIYGILLLQKKI 177
           +PGCPP  EA +  ++LLQ+ I
Sbjct: 159 IPGCPPRPEAYMQALMLLQESI 180


>gi|301058551|ref|ZP_07199556.1| NADH dehydrogenase I subunit B [delta proteobacterium NaphS2]
 gi|300447283|gb|EFK11043.1| NADH dehydrogenase I subunit B [delta proteobacterium NaphS2]
          Length = 210

 Score =  152 bits (383), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 72/140 (51%), Positives = 101/140 (72%), Gaps = 2/140 (1%)

Query: 39  LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APRASPRQSDVMI 97
           ++T +  ++ W+R  SL    FGL+CC VEMM A   RYD+ RFG    RASPR++D++I
Sbjct: 28  ILTRLQDMLAWSRKHSLWPFGFGLSCCFVEMMTAITSRYDISRFGAEVVRASPREADMII 87

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           +AGT+  KM   ++R+Y+QM  PR+VISMGSCAN GG +   YSVV+G D+ +PVD+YVP
Sbjct: 88  IAGTMFVKMVPVVKRLYEQMMAPRWVISMGSCANSGGMFDI-YSVVQGVDQFLPVDVYVP 146

Query: 158 GCPPTAEALIYGILLLQKKI 177
           GCPP+  A + G+ LLQ+K+
Sbjct: 147 GCPPSPMAFMEGLTLLQEKV 166


>gi|110227083|ref|YP_665562.1| NADH dehydrogenase subunit K [Populus alba]
 gi|122243414|sp|Q14FF3|NDHK_POPAL RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
 gi|109945521|dbj|BAE97209.1| NADH dehydrogenase subunit K [Populus alba]
          Length = 225

 Score =  151 bits (382), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 68/142 (47%), Positives = 99/142 (69%), Gaps = 1/142 (0%)

Query: 39  LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIV 98
           + T+ + L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPRQ+D+++ 
Sbjct: 18  ISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILT 77

Query: 99  AGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPVDIYVP 157
           AGT+T KMA +L R+Y+QMPE +YVI+MG+C   GG +   SYS VRG D+++PVD+Y+P
Sbjct: 78  AGTVTMKMAPSLVRLYEQMPEQKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLP 137

Query: 158 GCPPTAEALIYGILLLQKKIRR 179
           GCPP  EA+I  I  L+KKI R
Sbjct: 138 GCPPKPEAIIDAITKLRKKISR 159


>gi|86606638|ref|YP_475401.1| NADH dehydrogenase subunit B [Synechococcus sp. JA-3-3Ab]
 gi|123505801|sp|Q2JT69|NDHK_SYNJA RecName: Full=NAD(P)H-quinone oxidoreductase subunit K; AltName:
           Full=NAD(P)H dehydrogenase I subunit K; AltName:
           Full=NDH-1 subunit K; Short=NDH-K
 gi|86555180|gb|ABD00138.1| NADH-ubiquinone/plastoquinone oxidoreductase, K subunit
           [Synechococcus sp. JA-3-3Ab]
          Length = 244

 Score =  151 bits (382), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 69/155 (44%), Positives = 108/155 (69%), Gaps = 2/155 (1%)

Query: 24  ADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFG 83
           A   ++++++++   ++T+V+ L  WA+  SL  + +G ACC +E       R+D +RFG
Sbjct: 12  ASAPQVTTDLSN-NVVLTTVNDLYNWAKMSSLWPLLYGTACCFIEFAAMLGSRFDFDRFG 70

Query: 84  FAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSV 142
             PR+SPR +D++I AGT+T KMA AL ++Y QM EP+YVI+MG+C   GG +   SY+ 
Sbjct: 71  LLPRSSPRTADLIITAGTVTMKMAPALVKLYQQMAEPKYVIAMGACTISGGMFSSDSYTA 130

Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
           VRG D+++PVD+Y+PGCPP  EA++  I+ L+KKI
Sbjct: 131 VRGVDKLIPVDVYIPGCPPRPEAIMDAIVKLRKKI 165


>gi|253989001|ref|YP_003040357.1| NADH dehydrogenase subunit B [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253780451|emb|CAQ83613.1| nadh dehydrogenase i chain b (nadh-ubiquinone oxidoreductase chain
           2 (nuo2) [Photorhabdus asymbiotica]
          Length = 224

 Score =  151 bits (382), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 75/142 (52%), Positives = 97/142 (68%), Gaps = 2/142 (1%)

Query: 37  GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95
           G L  ++  LV W R  SL    FGL+CC VEM  +    +D+ RFG    RASPRQ+D 
Sbjct: 40  GKLEHALHDLVNWGRKNSLWPYNFGLSCCYVEMATSFTAVHDVARFGAEVLRASPRQADF 99

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
           M+VAGT   KMA  ++R+YDQM EP++VISMG+CAN GG Y   YSVV+G D+ +PVD+Y
Sbjct: 100 MVVAGTCFTKMAPVIQRLYDQMLEPKWVISMGACANSGGMYDI-YSVVQGVDKFIPVDVY 158

Query: 156 VPGCPPTAEALIYGILLLQKKI 177
           +PGCPP  EA +  +LLLQ+ I
Sbjct: 159 IPGCPPRPEAYMQALLLLQESI 180


>gi|283852201|ref|ZP_06369474.1| NADH-quinone oxidoreductase, B subunit [Desulfovibrio sp. FW1012B]
 gi|283572427|gb|EFC20414.1| NADH-quinone oxidoreductase, B subunit [Desulfovibrio sp. FW1012B]
          Length = 176

 Score =  151 bits (382), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 73/139 (52%), Positives = 102/139 (73%), Gaps = 3/139 (2%)

Query: 42  SVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAG 100
           +V +LV   R  S+  MTFGLACCA+EMM   M R+D+ R+G    R SPRQSD+MIVAG
Sbjct: 24  AVQKLVDVCRAMSIWPMTFGLACCAIEMMAVGMARFDIARYGAEVFRPSPRQSDLMIVAG 83

Query: 101 TLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS--YSVVRGCDRIVPVDIYVPG 158
           T+  K+A A+ R+++QMP PRYV+++G+CA  GG ++    Y+VV+G D ++PVD+YVPG
Sbjct: 84  TVNKKIAPAVVRLFEQMPAPRYVMALGNCAISGGPFNIEGQYNVVQGVDTLIPVDVYVPG 143

Query: 159 CPPTAEALIYGILLLQKKI 177
           CPP  EAL+ G+  +Q+KI
Sbjct: 144 CPPRPEALLEGLFAIQQKI 162


>gi|154795218|ref|YP_001109505.2| NADH dehydrogenase subunit K [Populus trichocarpa]
 gi|224173986|ref|XP_002339836.1| predicted protein [Populus trichocarpa]
 gi|218527945|sp|A4GYR4|NDHK_POPTR RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
 gi|222832334|gb|EEE70811.1| predicted protein [Populus trichocarpa]
          Length = 225

 Score =  151 bits (382), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 68/142 (47%), Positives = 99/142 (69%), Gaps = 1/142 (0%)

Query: 39  LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIV 98
           + T+ + L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPRQ+D+++ 
Sbjct: 18  ISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILT 77

Query: 99  AGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPVDIYVP 157
           AGT+T KMA +L R+Y+QMPE +YVI+MG+C   GG +   SYS VRG D+++PVD+Y+P
Sbjct: 78  AGTVTMKMAPSLVRLYEQMPEQKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLP 137

Query: 158 GCPPTAEALIYGILLLQKKIRR 179
           GCPP  EA+I  I  L+KKI R
Sbjct: 138 GCPPKPEAIIDAITKLRKKISR 159


>gi|15802834|ref|NP_288861.1| NADH dehydrogenase subunit B [Escherichia coli O157:H7 EDL933]
 gi|25298992|pir||D85869 NADH dehydrogenase I chain B [imported] - Escherichia coli  (strain
           O157:H7, substrain EDL933)
 gi|12516640|gb|AAG57416.1|AE005461_1 NADH dehydrogenase I chain B [Escherichia coli O157:H7 str. EDL933]
          Length = 220

 Score =  151 bits (382), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 74/160 (46%), Positives = 107/160 (66%), Gaps = 3/160 (1%)

Query: 19  LEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78
           L+K +     +  E+ +K   +  ++ +V W R  S+    FGL+CC VEM+ +    +D
Sbjct: 19  LQKQEIVTDPLEQEV-NKNVFMGKLNDMVNWGRKNSIWPYNFGLSCCYVEMVTSFTAVHD 77

Query: 79  LERFG-FAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137
           + RFG    RASPRQ+D+M+VAGT   KMA  ++R+YDQM EP++VISMG+CAN GG Y 
Sbjct: 78  VARFGAXVLRASPRQADLMVVAGTCFTKMAPVIQRLYDQMLEPKWVISMGACANSGGMYD 137

Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
             YSVV+G D+ +PVD+Y+PGCPP  EA +  ++LLQ+ I
Sbjct: 138 I-YSVVQGVDKFIPVDVYIPGCPPRPEAYMQALMLLQESI 176


>gi|82777695|ref|YP_404044.1| NADH dehydrogenase subunit B [Shigella dysenteriae Sd197]
 gi|309785009|ref|ZP_07679642.1| NADH-quinone oxidoreductase, B subunit [Shigella dysenteriae 1617]
 gi|123562059|sp|Q32DQ2|NUOB_SHIDS RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|81241843|gb|ABB62553.1| NADH dehydrogenase I chain B [Shigella dysenteriae Sd197]
 gi|308927379|gb|EFP72853.1| NADH-quinone oxidoreductase, B subunit [Shigella dysenteriae 1617]
          Length = 220

 Score =  151 bits (381), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 74/162 (45%), Positives = 108/162 (66%), Gaps = 3/162 (1%)

Query: 19  LEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78
           L+K +     +  E+ +K   +  ++ +V W R  S+    FGL+CC VEM+ +    +D
Sbjct: 19  LQKQEIVTDPLEQEV-NKNVFMGKLNDMVNWGRKNSIWPYNFGLSCCYVEMVTSFTAVHD 77

Query: 79  LERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137
           + RFG    RASPRQ+D+M+VAGT   KMA  ++R+YDQM EP++VISMG+CAN GG Y 
Sbjct: 78  VARFGAEVLRASPRQADLMVVAGTCFTKMAPVIQRLYDQMLEPKWVISMGACANSGGMYD 137

Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
             YSVV+G D+ +PVD+Y+PGCPP  EA +  ++LLQ+ I +
Sbjct: 138 I-YSVVQGVDKFIPVDVYIPGCPPRPEAYMQALMLLQESIAK 178


>gi|91200364|emb|CAJ73410.1| strongly similar to NADH dehydrogenase I chain B [Candidatus
           Kuenenia stuttgartiensis]
          Length = 212

 Score =  151 bits (381), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 70/148 (47%), Positives = 100/148 (67%), Gaps = 2/148 (1%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RAS 89
            E   K  ++ ++  L+ W R  SL    FGL+CC VEM  +   +YD+ RFG    R +
Sbjct: 22  EEAVQKTVVLCNLQNLIAWGRKNSLWPFNFGLSCCYVEMATSLTSKYDIARFGAEVIRGT 81

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PR++DVMI AGT+  KMA  ++R+Y+QM EPR++ISMGSC+N GG Y   YSVV+G D+ 
Sbjct: 82  PREADVMITAGTIFIKMAPIIKRLYEQMMEPRWIISMGSCSNSGGMYDI-YSVVQGVDKF 140

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKI 177
           +PVD+YVPGCPP  +A + G+L+L+  +
Sbjct: 141 MPVDVYVPGCPPRPDAFMEGLLMLRDSV 168


>gi|320102221|ref|YP_004177812.1| NADH-quinone oxidoreductase subunit B [Isosphaera pallida ATCC
           43644]
 gi|319749503|gb|ADV61263.1| NADH-quinone oxidoreductase, B subunit [Isosphaera pallida ATCC
           43644]
          Length = 247

 Score =  151 bits (381), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 72/153 (47%), Positives = 102/153 (66%), Gaps = 2/153 (1%)

Query: 32  EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASP 90
           E   +G ++TS+D +V W R  S   M F  ACC +E+M     R+D+ RFG    R SP
Sbjct: 44  EELPEGVILTSLDSVVNWCRKYSFWPMPFATACCGIELMSVGASRFDIARFGAEVMRFSP 103

Query: 91  RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150
           RQ D+MIVAG +  KM   L+R++ QMPEP++ ISMG+CA+ GG +  +Y+VV+G DR +
Sbjct: 104 RQCDLMIVAGRVVMKMMPVLQRIWLQMPEPKWCISMGACASTGGIFD-TYAVVQGIDRFI 162

Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           PVD+Y+PGCPP  E ++  IL LQ K++R G +
Sbjct: 163 PVDVYIPGCPPRPEQILRAILDLQDKVQRGGKL 195


>gi|154795234|ref|YP_209525.2| NADH dehydrogenase subunit K [Huperzia lucidula]
          Length = 242

 Score =  151 bits (381), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 69/152 (45%), Positives = 102/152 (67%), Gaps = 1/152 (0%)

Query: 27  SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP 86
           S +  + T    ++T+ +    WAR  SL  + +G +CC +E       R D +R+G  P
Sbjct: 6   SSLLDKTTSNSIVLTTFNDFSNWARLSSLWPLLYGTSCCFIESASLIGSRSDSDRYGLVP 65

Query: 87  RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRG 145
           R+SPRQ+D++I AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG
Sbjct: 66  RSSPRQADLVITAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRG 125

Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
            D+ +PVD+Y+PGCPP  EA+I  I+ L+K++
Sbjct: 126 VDKPIPVDVYLPGCPPKPEAIIDAIVKLRKRV 157


>gi|75286712|sp|Q5SD03|NDHK_HUPLU RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
 gi|50659999|gb|AAT80721.1| NADH-plastoquinone oxidoreductase subunit K [Huperzia lucidula]
          Length = 263

 Score =  151 bits (381), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 69/152 (45%), Positives = 102/152 (67%), Gaps = 1/152 (0%)

Query: 27  SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP 86
           S +  + T    ++T+ +    WAR  SL  + +G +CC +E       R D +R+G  P
Sbjct: 27  SSLLDKTTSNSIVLTTFNDFSNWARLSSLWPLLYGTSCCFIESASLIGSRSDSDRYGLVP 86

Query: 87  RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRG 145
           R+SPRQ+D++I AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG
Sbjct: 87  RSSPRQADLVITAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRG 146

Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
            D+ +PVD+Y+PGCPP  EA+I  I+ L+K++
Sbjct: 147 VDKPIPVDVYLPGCPPKPEAIIDAIVKLRKRV 178


>gi|33519943|ref|NP_878775.1| NADH dehydrogenase subunit B [Candidatus Blochmannia floridanus]
 gi|81666912|sp|Q7VRV3|NUOB_BLOFL RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|33504289|emb|CAD83181.1| NADH dehydrogenase I chain B [Candidatus Blochmannia floridanus]
          Length = 223

 Score =  151 bits (381), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 76/144 (52%), Positives = 97/144 (67%), Gaps = 2/144 (1%)

Query: 37  GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95
           G L   + + V W R+ SL    FGL+CC VEM  A    +D+ RFG    R+SPRQSD 
Sbjct: 41  GKLKNLLHKAVNWGRSNSLWPYNFGLSCCYVEMTTAFTAVHDVARFGSEVLRSSPRQSDF 100

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
           M++AGT   KM   ++R+YDQM EP++VISMGSCAN GG Y   YSVV+G D+ +PVDIY
Sbjct: 101 MVIAGTPFLKMVPIIQRLYDQMLEPKWVISMGSCANSGGMYDI-YSVVQGVDKFLPVDIY 159

Query: 156 VPGCPPTAEALIYGILLLQKKIRR 179
           +PGCPP  EA I  +LLL+K I +
Sbjct: 160 IPGCPPRPEAYIQALLLLKKSINK 183


>gi|24213594|ref|NP_711075.1| NADH dehydrogenase (ubiquinone) chain B [Leptospira interrogans
           serovar Lai str. 56601]
 gi|45658576|ref|YP_002662.1| NADH dehydrogenase subunit B [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|81471022|sp|Q8F7Q0|NUOB_LEPIN RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|81567883|sp|Q72NT7|NUOB_LEPIC RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|24194386|gb|AAN48093.1| NADH dehydrogenase (ubiquinone) chain B [Leptospira interrogans
           serovar Lai str. 56601]
 gi|45601820|gb|AAS71299.1| NADH dehydrogenase I B subunit [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
          Length = 186

 Score =  151 bits (381), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 71/159 (44%), Positives = 106/159 (66%), Gaps = 2/159 (1%)

Query: 24  ADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFG 83
           +D S+   +       + +V+ ++ W R+ SL    F  ACC +E M  +   YD+ RFG
Sbjct: 4   SDLSKTPGQALGDMVQLGNVESVIQWGRSYSLWPYPFATACCGIEYMSTACSDYDIARFG 63

Query: 84  FA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142
              P  SPRQ+D+++V GT+T KMA  LR++YDQM EP++VIS+G+CA+ GG +H +Y V
Sbjct: 64  AERPSFSPRQADMILVLGTITYKMAPVLRQIYDQMAEPKFVISVGACASSGGMFH-TYGV 122

Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
           ++G DRI+PVD+YVPGCPP  EA++  +L LQ K++  G
Sbjct: 123 LQGVDRILPVDVYVPGCPPRPEAILDALLKLQTKLKTQG 161


>gi|115523729|ref|YP_780640.1| NADH-quinone oxidoreductase, B subunit [Rhodopseudomonas palustris
           BisA53]
 gi|122296835|sp|Q07QX4|NUOB1_RHOP5 RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName:
           Full=NADH dehydrogenase I subunit B 1; AltName:
           Full=NDH-1 subunit B 1
 gi|115517676|gb|ABJ05660.1| NADH-quinone oxidoreductase, B subunit [Rhodopseudomonas palustris
           BisA53]
          Length = 205

 Score =  151 bits (381), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 72/140 (51%), Positives = 101/140 (72%), Gaps = 2/140 (1%)

Query: 39  LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMI 97
           L T ++ LV W+R  SL    FGL+CC VE + A  P +D  RFG    RASPRQ+D+++
Sbjct: 23  LFTRLEDLVAWSRKNSLWPFNFGLSCCYVEQVTALTPVFDQARFGAEVIRASPRQADLLV 82

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           V+GT+ +KMA+ L R+Y+QM  PR+VISMG+CAN GG Y   YSVV+G D  +PVD+Y+P
Sbjct: 83  VSGTVFHKMAAPLLRLYEQMRAPRWVISMGACANSGGMYDV-YSVVQGVDSFLPVDVYIP 141

Query: 158 GCPPTAEALIYGILLLQKKI 177
           GCPP  EA++  ++LLQ+++
Sbjct: 142 GCPPRPEAVLDALILLQQQV 161


>gi|332971177|gb|EGK10141.1| NADH-quinone oxidoreductase subunit B [Psychrobacter sp.
           1501(2011)]
          Length = 222

 Score =  151 bits (381), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 79/144 (54%), Positives = 96/144 (66%), Gaps = 2/144 (1%)

Query: 37  GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95
           G L   V     W R  SL    FG +CC VE        +DL RFG    RASPRQ+DV
Sbjct: 38  GKLEDMVHASANWGRKHSLWPFNFGTSCCYVEYATTLTAVHDLSRFGAEVIRASPRQADV 97

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
           MIVAGT   KMA  ++R+Y+QM EP++VISMGSCAN GG Y   YSVV+G D+I+PVD+Y
Sbjct: 98  MIVAGTCFVKMAPVIQRLYEQMLEPKWVISMGSCANSGGMYDI-YSVVQGVDKIIPVDVY 156

Query: 156 VPGCPPTAEALIYGILLLQKKIRR 179
           VPGCPP  EALI G++LLQ+ I +
Sbjct: 157 VPGCPPRPEALIQGLMLLQESITK 180


>gi|261885026|ref|ZP_06009065.1| NADH-quinone oxidoreductase chain b [Campylobacter fetus subsp.
           venerealis str. Azul-94]
          Length = 168

 Score =  151 bits (381), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 70/148 (47%), Positives = 99/148 (66%), Gaps = 2/148 (1%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF-GFAPRAS 89
             +     ++T +D L  W R  SL  M FG ACCA+E M A   ++DL RF     R S
Sbjct: 4   ENLVQNDVVLTRLDALFNWGRKNSLWPMIFGTACCAIEFMSAVSSKHDLSRFEAEVMRFS 63

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQ+D+MI+AGT++ K A  L+ +YDQM EP++V+SMG+CA  GG+Y  +Y+ ++G D+I
Sbjct: 64  PRQADLMIIAGTISFKQAPILKEIYDQMCEPKWVVSMGACACSGGFYD-NYTTLQGIDQI 122

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKI 177
           +PVD+Y+ GCPP  EA+I  IL +Q KI
Sbjct: 123 IPVDVYISGCPPRPEAIIDAILAIQDKI 150


>gi|292488843|ref|YP_003531730.1| NADH dehydrogenase I subunit B [Erwinia amylovora CFBP1430]
 gi|292899993|ref|YP_003539362.1| NADH dehydrogenase I chain B [Erwinia amylovora ATCC 49946]
 gi|291199841|emb|CBJ46965.1| NADH dehydrogenase I chain B [Erwinia amylovora ATCC 49946]
 gi|291554277|emb|CBA21599.1| NADH dehydrogenase I chain B [Erwinia amylovora CFBP1430]
 gi|312173002|emb|CBX81257.1| NADH dehydrogenase I chain B [Erwinia amylovora ATCC BAA-2158]
          Length = 224

 Score =  151 bits (381), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 74/142 (52%), Positives = 97/142 (68%), Gaps = 2/142 (1%)

Query: 37  GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95
           G L  ++  +V W R  SL    FGL+CC VEM  +    +D+ RFG    RASPRQ+D 
Sbjct: 40  GKLEHALHDMVNWGRKNSLWPFNFGLSCCYVEMTTSFTAVHDVARFGSEVIRASPRQADF 99

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
           M+VAGT   KMA  ++R+YDQM EP++VISMG+CAN GG Y   YSVV+G D+ +PVD+Y
Sbjct: 100 MVVAGTCFTKMAPVIQRLYDQMLEPKWVISMGACANSGGMYDI-YSVVQGVDKFLPVDVY 158

Query: 156 VPGCPPTAEALIYGILLLQKKI 177
           +PGCPP  EA +  +LLLQ+ I
Sbjct: 159 IPGCPPRPEAYMQALLLLQESI 180


>gi|15832425|ref|NP_311198.1| NADH dehydrogenase subunit B [Escherichia coli O157:H7 str. Sakai]
 gi|16130222|ref|NP_416790.1| NADH:ubiquinone oxidoreductase, chain B [Escherichia coli str. K-12
           substr. MG1655]
 gi|24113659|ref|NP_708169.1| NADH dehydrogenase subunit B [Shigella flexneri 2a str. 301]
 gi|26248674|ref|NP_754714.1| NADH dehydrogenase subunit B [Escherichia coli CFT073]
 gi|30063713|ref|NP_837884.1| NADH dehydrogenase subunit B [Shigella flexneri 2a str. 2457T]
 gi|74312805|ref|YP_311224.1| NADH dehydrogenase subunit B [Shigella sonnei Ss046]
 gi|82544765|ref|YP_408712.1| NADH dehydrogenase subunit B [Shigella boydii Sb227]
 gi|89109105|ref|AP_002885.1| NADH:ubiquinone oxidoreductase, chain B [Escherichia coli str. K-12
           substr. W3110]
 gi|91211579|ref|YP_541565.1| NADH dehydrogenase subunit B [Escherichia coli UTI89]
 gi|110642491|ref|YP_670221.1| NADH dehydrogenase subunit B [Escherichia coli 536]
 gi|110806250|ref|YP_689770.1| NADH dehydrogenase subunit B [Shigella flexneri 5 str. 8401]
 gi|117624476|ref|YP_853389.1| NADH dehydrogenase subunit B [Escherichia coli APEC O1]
 gi|157155733|ref|YP_001463630.1| NADH dehydrogenase subunit B [Escherichia coli E24377A]
 gi|157161775|ref|YP_001459093.1| NADH dehydrogenase subunit B [Escherichia coli HS]
 gi|168748136|ref|ZP_02773158.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli O157:H7
           str. EC4113]
 gi|168755039|ref|ZP_02780046.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli O157:H7
           str. EC4401]
 gi|168761274|ref|ZP_02786281.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli O157:H7
           str. EC4501]
 gi|168767913|ref|ZP_02792920.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli O157:H7
           str. EC4486]
 gi|168772987|ref|ZP_02797994.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli O157:H7
           str. EC4196]
 gi|168780142|ref|ZP_02805149.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli O157:H7
           str. EC4076]
 gi|168787194|ref|ZP_02812201.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli O157:H7
           str. EC869]
 gi|168798457|ref|ZP_02823464.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli O157:H7
           str. EC508]
 gi|170019404|ref|YP_001724358.1| NADH dehydrogenase subunit B [Escherichia coli ATCC 8739]
 gi|170081904|ref|YP_001731224.1| NADH:ubiquinone oxidoreductase, chain B [Escherichia coli str. K-12
           substr. DH10B]
 gi|170681065|ref|YP_001744485.1| NADH dehydrogenase subunit B [Escherichia coli SMS-3-5]
 gi|170767483|ref|ZP_02901936.1| NADH-quinone oxidoreductase, B subunit [Escherichia albertii
           TW07627]
 gi|187732051|ref|YP_001881108.1| NADH dehydrogenase subunit B [Shigella boydii CDC 3083-94]
 gi|188491795|ref|ZP_02999065.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli 53638]
 gi|191166481|ref|ZP_03028311.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli B7A]
 gi|191169994|ref|ZP_03031548.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli F11]
 gi|193062269|ref|ZP_03043364.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli E22]
 gi|193068244|ref|ZP_03049208.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli E110019]
 gi|194427226|ref|ZP_03059777.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli B171]
 gi|194433374|ref|ZP_03065654.1| NADH-quinone oxidoreductase, B subunit [Shigella dysenteriae 1012]
 gi|194435968|ref|ZP_03068070.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli 101-1]
 gi|195935664|ref|ZP_03081046.1| NADH dehydrogenase subunit B [Escherichia coli O157:H7 str. EC4024]
 gi|208808363|ref|ZP_03250700.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli O157:H7
           str. EC4206]
 gi|208814079|ref|ZP_03255408.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli O157:H7
           str. EC4045]
 gi|208821251|ref|ZP_03261571.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli O157:H7
           str. EC4042]
 gi|209400872|ref|YP_002271696.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli O157:H7
           str. EC4115]
 gi|209919735|ref|YP_002293819.1| NADH dehydrogenase subunit B [Escherichia coli SE11]
 gi|215487500|ref|YP_002329931.1| NADH dehydrogenase subunit B [Escherichia coli O127:H6 str.
           E2348/69]
 gi|217327914|ref|ZP_03443997.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli O157:H7
           str. TW14588]
 gi|218548264|ref|YP_002382055.1| NADH dehydrogenase subunit B [Escherichia fergusonii ATCC 35469]
 gi|218554843|ref|YP_002387756.1| NADH dehydrogenase subunit B [Escherichia coli IAI1]
 gi|218559200|ref|YP_002392113.1| NADH dehydrogenase subunit B [Escherichia coli S88]
 gi|218690447|ref|YP_002398659.1| NADH dehydrogenase subunit B [Escherichia coli ED1a]
 gi|218695886|ref|YP_002403553.1| NADH dehydrogenase subunit B [Escherichia coli 55989]
 gi|218700761|ref|YP_002408390.1| NADH dehydrogenase subunit B [Escherichia coli IAI39]
 gi|218705817|ref|YP_002413336.1| NADH dehydrogenase subunit B [Escherichia coli UMN026]
 gi|227887343|ref|ZP_04005148.1| NADH dehydrogenase subunit B [Escherichia coli 83972]
 gi|237704761|ref|ZP_04535242.1| trifunctional NADH dehydrogenase I subunit B/C/D [Escherichia sp.
           3_2_53FAA]
 gi|238901462|ref|YP_002927258.1| NADH:ubiquinone oxidoreductase, chain B [Escherichia coli BW2952]
 gi|253772791|ref|YP_003035622.1| NADH dehydrogenase subunit B [Escherichia coli 'BL21-Gold(DE3)pLysS
           AG']
 gi|254162296|ref|YP_003045404.1| NADH dehydrogenase subunit B [Escherichia coli B str. REL606]
 gi|254794179|ref|YP_003079016.1| NADH dehydrogenase subunit B [Escherichia coli O157:H7 str.
           TW14359]
 gi|256017557|ref|ZP_05431422.1| NADH dehydrogenase subunit B [Shigella sp. D9]
 gi|256022029|ref|ZP_05435894.1| NADH dehydrogenase subunit B [Escherichia sp. 4_1_40B]
 gi|260844874|ref|YP_003222652.1| NADH:ubiquinone oxidoreductase, chain B [Escherichia coli O103:H2
           str. 12009]
 gi|260856331|ref|YP_003230222.1| NADH:ubiquinone oxidoreductase, chain B [Escherichia coli O26:H11
           str. 11368]
 gi|260869010|ref|YP_003235412.1| NADH:ubiquinone oxidoreductase, chain B [Escherichia coli O111:H-
           str. 11128]
 gi|261223259|ref|ZP_05937540.1| NADH:ubiquinone oxidoreductase, chain B [Escherichia coli O157:H7
           str. FRIK2000]
 gi|261259191|ref|ZP_05951724.1| NADH:ubiquinone oxidoreductase, chain B [Escherichia coli O157:H7
           str. FRIK966]
 gi|291283528|ref|YP_003500346.1| NADH-quinone oxidoreductase subunit B [Escherichia coli O55:H7 str.
           CB9615]
 gi|293405753|ref|ZP_06649745.1| NADH-quinone oxidoreductase subunit B [Escherichia coli FVEC1412]
 gi|293410647|ref|ZP_06654223.1| NADH dehydrogenase subunit B [Escherichia coli B354]
 gi|293415580|ref|ZP_06658223.1| NADH-quinone oxidoreductase subunit B [Escherichia coli B185]
 gi|293446624|ref|ZP_06663046.1| NADH dehydrogenase I subunit B [Escherichia coli B088]
 gi|297517328|ref|ZP_06935714.1| NADH dehydrogenase subunit B [Escherichia coli OP50]
 gi|298381436|ref|ZP_06991035.1| NADH-quinone oxidoreductase subunit B [Escherichia coli FVEC1302]
 gi|300818112|ref|ZP_07098324.1| NADH dehydrogenase subunit B [Escherichia coli MS 107-1]
 gi|300822158|ref|ZP_07102300.1| NADH dehydrogenase subunit B [Escherichia coli MS 119-7]
 gi|300896961|ref|ZP_07115442.1| NADH dehydrogenase subunit B [Escherichia coli MS 198-1]
 gi|300903672|ref|ZP_07121588.1| NADH dehydrogenase subunit B [Escherichia coli MS 84-1]
 gi|300924546|ref|ZP_07140510.1| NADH dehydrogenase subunit B [Escherichia coli MS 182-1]
 gi|300931360|ref|ZP_07146691.1| NADH dehydrogenase subunit B [Escherichia coli MS 187-1]
 gi|300936852|ref|ZP_07151741.1| NADH dehydrogenase subunit B [Escherichia coli MS 21-1]
 gi|300948569|ref|ZP_07162662.1| NADH dehydrogenase subunit B [Escherichia coli MS 116-1]
 gi|300956453|ref|ZP_07168742.1| NADH dehydrogenase subunit B [Escherichia coli MS 175-1]
 gi|300981071|ref|ZP_07175343.1| NADH dehydrogenase subunit B [Escherichia coli MS 200-1]
 gi|300983382|ref|ZP_07176566.1| NADH dehydrogenase subunit B [Escherichia coli MS 45-1]
 gi|301024085|ref|ZP_07187799.1| NADH dehydrogenase subunit B [Escherichia coli MS 69-1]
 gi|301049040|ref|ZP_07196025.1| NADH dehydrogenase subunit B [Escherichia coli MS 185-1]
 gi|301303254|ref|ZP_07209379.1| NADH dehydrogenase subunit B [Escherichia coli MS 124-1]
 gi|301328779|ref|ZP_07221827.1| NADH dehydrogenase subunit B [Escherichia coli MS 78-1]
 gi|301647616|ref|ZP_07247412.1| NADH dehydrogenase subunit B [Escherichia coli MS 146-1]
 gi|306814602|ref|ZP_07448764.1| NADH dehydrogenase subunit B [Escherichia coli NC101]
 gi|307138951|ref|ZP_07498307.1| NADH dehydrogenase subunit B [Escherichia coli H736]
 gi|307311153|ref|ZP_07590797.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli W]
 gi|309793166|ref|ZP_07687594.1| NADH dehydrogenase subunit B [Escherichia coli MS 145-7]
 gi|312967585|ref|ZP_07781800.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli 2362-75]
 gi|312973454|ref|ZP_07787626.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli 1827-70]
 gi|331642925|ref|ZP_08344060.1| NADH dehydrogenase I subunit B [Escherichia coli H736]
 gi|331647942|ref|ZP_08349034.1| NADH dehydrogenase I subunit B [Escherichia coli M605]
 gi|331653729|ref|ZP_08354730.1| NADH dehydrogenase I subunit B [Escherichia coli M718]
 gi|331658369|ref|ZP_08359331.1| NADH dehydrogenase I subunit B [Escherichia coli TA206]
 gi|331663802|ref|ZP_08364712.1| NADH dehydrogenase I subunit B [Escherichia coli TA143]
 gi|331668985|ref|ZP_08369833.1| NADH dehydrogenase I subunit B [Escherichia coli TA271]
 gi|331673790|ref|ZP_08374553.1| NADH dehydrogenase I subunit B [Escherichia coli TA280]
 gi|331678233|ref|ZP_08378908.1| NADH dehydrogenase I subunit B [Escherichia coli H591]
 gi|331683958|ref|ZP_08384554.1| NADH dehydrogenase I subunit B [Escherichia coli H299]
 gi|332278567|ref|ZP_08390980.1| NADH:ubiquinone oxidoreductase chain B [Shigella sp. D9]
 gi|84028744|sp|P0AFC9|NUOB_ECO57 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B; AltName: Full=NUO2
 gi|84028745|sp|P0AFC8|NUOB_ECOL6 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B; AltName: Full=NUO2
 gi|84028746|sp|P0AFC7|NUOB_ECOLI RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B; AltName: Full=NUO2
 gi|84028747|sp|P0AFD0|NUOB_SHIFL RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|122423113|sp|Q1R9D0|NUOB_ECOUT RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|122957324|sp|Q0T2K0|NUOB_SHIF8 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|123147875|sp|Q0TFF9|NUOB_ECOL5 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|123559142|sp|Q31YH4|NUOB_SHIBS RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|123616691|sp|Q3YZS3|NUOB_SHISS RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|238065125|sp|A7ZPA1|NUOB_ECO24 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|238065126|sp|B7UFU5|NUOB_ECO27 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|238065127|sp|B7MG51|NUOB_ECO45 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|238065128|sp|B7LBP8|NUOB_ECO55 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|238065129|sp|B5YXS7|NUOB_ECO5E RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|238065130|sp|B7NNW6|NUOB_ECO7I RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|238065131|sp|B7MXW6|NUOB_ECO81 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|238065132|sp|B7M5W6|NUOB_ECO8A RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|238065133|sp|B1X8Z9|NUOB_ECODH RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|238065134|sp|A8A2F6|NUOB_ECOHS RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|238065135|sp|A1ADD5|NUOB_ECOK1 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|238065136|sp|B1IXQ5|NUOB_ECOLC RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|238065137|sp|B7N5P9|NUOB_ECOLU RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|238065138|sp|B6I7N7|NUOB_ECOSE RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|238065139|sp|B1LLP0|NUOB_ECOSM RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|238065143|sp|B7LM45|NUOB_ESCF3 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|238065216|sp|B2TW68|NUOB_SHIB3 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|259514662|sp|C4ZUD0|NUOB_ECOBW RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|26109079|gb|AAN81282.1|AE016763_241 NADH dehydrogenase I chain B [Escherichia coli CFT073]
 gi|1788624|gb|AAC75347.1| NADH:ubiquinone oxidoreductase, chain B [Escherichia coli str. K-12
           substr. MG1655]
 gi|13362641|dbj|BAB36594.1| NADH dehydrogenase I chain B [Escherichia coli O157:H7 str. Sakai]
 gi|24052724|gb|AAN43876.1| NADH dehydrogenase I chain B [Shigella flexneri 2a str. 301]
 gi|30041968|gb|AAP17694.1| NADH dehydrogenase I chain B [Shigella flexneri 2a str. 2457T]
 gi|73856282|gb|AAZ88989.1| NADH dehydrogenase I chain B [Shigella sonnei Ss046]
 gi|81246176|gb|ABB66884.1| NADH dehydrogenase I chain B [Shigella boydii Sb227]
 gi|85675345|dbj|BAA16121.2| NADH:ubiquinone oxidoreductase, chain B [Escherichia coli str. K12
           substr. W3110]
 gi|91073153|gb|ABE08034.1| NADH dehydrogenase I chain B [Escherichia coli UTI89]
 gi|110344083|gb|ABG70320.1| NADH dehydrogenase I chain B [Escherichia coli 536]
 gi|110615798|gb|ABF04465.1| NADH dehydrogenase I chain B [Shigella flexneri 5 str. 8401]
 gi|115513600|gb|ABJ01675.1| NADH dehydrogenase subunit B [Escherichia coli APEC O1]
 gi|157067455|gb|ABV06710.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli HS]
 gi|157077763|gb|ABV17471.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli E24377A]
 gi|169754332|gb|ACA77031.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli ATCC 8739]
 gi|169889739|gb|ACB03446.1| NADH:ubiquinone oxidoreductase, chain B [Escherichia coli str. K-12
           substr. DH10B]
 gi|170123817|gb|EDS92748.1| NADH-quinone oxidoreductase, B subunit [Escherichia albertii
           TW07627]
 gi|170518783|gb|ACB16961.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli SMS-3-5]
 gi|187429043|gb|ACD08317.1| NADH-quinone oxidoreductase, B subunit [Shigella boydii CDC
           3083-94]
 gi|187771211|gb|EDU35055.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli O157:H7
           str. EC4196]
 gi|188017366|gb|EDU55488.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli O157:H7
           str. EC4113]
 gi|188486994|gb|EDU62097.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli 53638]
 gi|189001940|gb|EDU70926.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli O157:H7
           str. EC4076]
 gi|189357731|gb|EDU76150.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli O157:H7
           str. EC4401]
 gi|189362998|gb|EDU81417.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli O157:H7
           str. EC4486]
 gi|189368240|gb|EDU86656.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli O157:H7
           str. EC4501]
 gi|189372840|gb|EDU91256.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli O157:H7
           str. EC869]
 gi|189378981|gb|EDU97397.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli O157:H7
           str. EC508]
 gi|190903441|gb|EDV63160.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli B7A]
 gi|190909510|gb|EDV69095.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli F11]
 gi|192931935|gb|EDV84534.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli E22]
 gi|192958523|gb|EDV88962.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli E110019]
 gi|194414847|gb|EDX31118.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli B171]
 gi|194418468|gb|EDX34557.1| NADH-quinone oxidoreductase, B subunit [Shigella dysenteriae 1012]
 gi|194424696|gb|EDX40681.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli 101-1]
 gi|208728164|gb|EDZ77765.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli O157:H7
           str. EC4206]
 gi|208735356|gb|EDZ84043.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli O157:H7
           str. EC4045]
 gi|208741374|gb|EDZ89056.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli O157:H7
           str. EC4042]
 gi|209162272|gb|ACI39705.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli O157:H7
           str. EC4115]
 gi|209765078|gb|ACI80851.1| NADH dehydrogenase I chain B [Escherichia coli]
 gi|209765080|gb|ACI80852.1| NADH dehydrogenase I chain B [Escherichia coli]
 gi|209765082|gb|ACI80853.1| NADH dehydrogenase I chain B [Escherichia coli]
 gi|209765084|gb|ACI80854.1| NADH dehydrogenase I chain B [Escherichia coli]
 gi|209765086|gb|ACI80855.1| NADH dehydrogenase I chain B [Escherichia coli]
 gi|209912994|dbj|BAG78068.1| NADH dehydrogenase I chain B [Escherichia coli SE11]
 gi|215265572|emb|CAS09975.1| NADH: ubiquinone oxidoreductase, chain B [Escherichia coli O127:H6
           str. E2348/69]
 gi|217320281|gb|EEC28706.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli O157:H7
           str. TW14588]
 gi|218352618|emb|CAU98399.1| NADH:ubiquinone oxidoreductase, chain B [Escherichia coli 55989]
 gi|218355805|emb|CAQ88418.1| NADH:ubiquinone oxidoreductase, chain B [Escherichia fergusonii
           ATCC 35469]
 gi|218361611|emb|CAQ99203.1| NADH:ubiquinone oxidoreductase, chain B [Escherichia coli IAI1]
 gi|218365969|emb|CAR03713.1| NADH:ubiquinone oxidoreductase, chain B [Escherichia coli S88]
 gi|218370747|emb|CAR18560.1| NADH:ubiquinone oxidoreductase, chain B [Escherichia coli IAI39]
 gi|218428011|emb|CAR08932.2| NADH:ubiquinone oxidoreductase, chain B [Escherichia coli ED1a]
 gi|218432914|emb|CAR13808.1| NADH:ubiquinone oxidoreductase, chain B [Escherichia coli UMN026]
 gi|222034043|emb|CAP76784.1| NadH-quinone oxidoreductase subunit B [Escherichia coli LF82]
 gi|226901127|gb|EEH87386.1| trifunctional NADH dehydrogenase I subunit B/C/D [Escherichia sp.
           3_2_53FAA]
 gi|227835693|gb|EEJ46159.1| NADH dehydrogenase subunit B [Escherichia coli 83972]
 gi|238861867|gb|ACR63865.1| NADH:ubiquinone oxidoreductase, chain B [Escherichia coli BW2952]
 gi|242377920|emb|CAQ32689.1| NADH:ubiquinone oxidoreductase, chain B, subunit of connecting
           fragment of NADH dehydrogenase I and NADH:ubiquinone
           oxidoreductase I [Escherichia coli BL21(DE3)]
 gi|253323835|gb|ACT28437.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253974197|gb|ACT39868.1| NADH dehydrogenase subunit B [Escherichia coli B str. REL606]
 gi|253978364|gb|ACT44034.1| NADH dehydrogenase subunit B [Escherichia coli BL21(DE3)]
 gi|254593579|gb|ACT72940.1| NADH:ubiquinone oxidoreductase, chain B [Escherichia coli O157:H7
           str. TW14359]
 gi|257754980|dbj|BAI26482.1| NADH:ubiquinone oxidoreductase, chain B [Escherichia coli O26:H11
           str. 11368]
 gi|257760021|dbj|BAI31518.1| NADH:ubiquinone oxidoreductase, chain B [Escherichia coli O103:H2
           str. 12009]
 gi|257765366|dbj|BAI36861.1| NADH:ubiquinone oxidoreductase, chain B [Escherichia coli O111:H-
           str. 11128]
 gi|260448620|gb|ACX39042.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli DH1]
 gi|281179374|dbj|BAI55704.1| NADH dehydrogenase I chain B [Escherichia coli SE15]
 gi|281601728|gb|ADA74712.1| NADH-quinone oxidoreductase subunit B [Shigella flexneri 2002017]
 gi|284922275|emb|CBG35360.1| NADH-quinone oxidoreductase subunit B [Escherichia coli 042]
 gi|290763401|gb|ADD57362.1| NADH-quinone oxidoreductase subunit B [Escherichia coli O55:H7 str.
           CB9615]
 gi|291323454|gb|EFE62882.1| NADH dehydrogenase I subunit B [Escherichia coli B088]
 gi|291427961|gb|EFF00988.1| NADH-quinone oxidoreductase subunit B [Escherichia coli FVEC1412]
 gi|291433228|gb|EFF06207.1| NADH-quinone oxidoreductase subunit B [Escherichia coli B185]
 gi|291471115|gb|EFF13599.1| NADH dehydrogenase subunit B [Escherichia coli B354]
 gi|294490294|gb|ADE89050.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli IHE3034]
 gi|298278878|gb|EFI20392.1| NADH-quinone oxidoreductase subunit B [Escherichia coli FVEC1302]
 gi|300299149|gb|EFJ55534.1| NADH dehydrogenase subunit B [Escherichia coli MS 185-1]
 gi|300307684|gb|EFJ62204.1| NADH dehydrogenase subunit B [Escherichia coli MS 200-1]
 gi|300316723|gb|EFJ66507.1| NADH dehydrogenase subunit B [Escherichia coli MS 175-1]
 gi|300359229|gb|EFJ75099.1| NADH dehydrogenase subunit B [Escherichia coli MS 198-1]
 gi|300396741|gb|EFJ80279.1| NADH dehydrogenase subunit B [Escherichia coli MS 69-1]
 gi|300404328|gb|EFJ87866.1| NADH dehydrogenase subunit B [Escherichia coli MS 84-1]
 gi|300408548|gb|EFJ92086.1| NADH dehydrogenase subunit B [Escherichia coli MS 45-1]
 gi|300419264|gb|EFK02575.1| NADH dehydrogenase subunit B [Escherichia coli MS 182-1]
 gi|300451917|gb|EFK15537.1| NADH dehydrogenase subunit B [Escherichia coli MS 116-1]
 gi|300458039|gb|EFK21532.1| NADH dehydrogenase subunit B [Escherichia coli MS 21-1]
 gi|300460822|gb|EFK24315.1| NADH dehydrogenase subunit B [Escherichia coli MS 187-1]
 gi|300525288|gb|EFK46357.1| NADH dehydrogenase subunit B [Escherichia coli MS 119-7]
 gi|300529256|gb|EFK50318.1| NADH dehydrogenase subunit B [Escherichia coli MS 107-1]
 gi|300841428|gb|EFK69188.1| NADH dehydrogenase subunit B [Escherichia coli MS 124-1]
 gi|300844841|gb|EFK72601.1| NADH dehydrogenase subunit B [Escherichia coli MS 78-1]
 gi|301074243|gb|EFK89049.1| NADH dehydrogenase subunit B [Escherichia coli MS 146-1]
 gi|305851996|gb|EFM52448.1| NADH dehydrogenase subunit B [Escherichia coli NC101]
 gi|306908659|gb|EFN39156.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli W]
 gi|307554349|gb|ADN47124.1| NADH dehydrogenase I chain B [Escherichia coli ABU 83972]
 gi|307626177|gb|ADN70481.1| NADH dehydrogenase subunit B [Escherichia coli UM146]
 gi|308123452|gb|EFO60714.1| NADH dehydrogenase subunit B [Escherichia coli MS 145-7]
 gi|309702599|emb|CBJ01927.1| NADH-quinone oxidoreductase subunit B [Escherichia coli ETEC
           H10407]
 gi|310332049|gb|EFP99284.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli 1827-70]
 gi|312287782|gb|EFR15687.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli 2362-75]
 gi|312946905|gb|ADR27732.1| NADH dehydrogenase subunit B [Escherichia coli O83:H1 str. NRG
           857C]
 gi|313651110|gb|EFS15509.1| NADH-quinone oxidoreductase, B subunit [Shigella flexneri 2a str.
           2457T]
 gi|315061579|gb|ADT75906.1| NADH:ubiquinone oxidoreductase, chain B [Escherichia coli W]
 gi|315136921|dbj|BAJ44080.1| NADH-quinone oxidoreductase subunit B [Escherichia coli DH1]
 gi|315255221|gb|EFU35189.1| NADH dehydrogenase subunit B [Escherichia coli MS 85-1]
 gi|315285913|gb|EFU45351.1| NADH dehydrogenase subunit B [Escherichia coli MS 110-3]
 gi|315292240|gb|EFU51592.1| NADH dehydrogenase subunit B [Escherichia coli MS 153-1]
 gi|315298114|gb|EFU57383.1| NADH dehydrogenase subunit B [Escherichia coli MS 16-3]
 gi|315615556|gb|EFU96188.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli 3431]
 gi|320177169|gb|EFW52181.1| NADH-ubiquinone oxidoreductase chain B [Shigella dysenteriae CDC
           74-1112]
 gi|320178740|gb|EFW53703.1| NADH-ubiquinone oxidoreductase chain B [Shigella boydii ATCC 9905]
 gi|320183382|gb|EFW58234.1| NADH-ubiquinone oxidoreductase chain B [Shigella flexneri CDC
           796-83]
 gi|320192092|gb|EFW66737.1| NADH-ubiquinone oxidoreductase chain B [Escherichia coli O157:H7
           str. EC1212]
 gi|320196154|gb|EFW70778.1| NADH-ubiquinone oxidoreductase chain B [Escherichia coli WV_060327]
 gi|320199875|gb|EFW74464.1| NADH-ubiquinone oxidoreductase chain B [Escherichia coli EC4100B]
 gi|320641114|gb|EFX10593.1| NADH dehydrogenase subunit B [Escherichia coli O157:H7 str. G5101]
 gi|320646502|gb|EFX15421.1| NADH dehydrogenase subunit B [Escherichia coli O157:H- str. 493-89]
 gi|320651599|gb|EFX19979.1| NADH dehydrogenase subunit B [Escherichia coli O157:H- str. H 2687]
 gi|320657351|gb|EFX25153.1| NADH dehydrogenase subunit B [Escherichia coli O55:H7 str. 3256-97
           TW 07815]
 gi|320663053|gb|EFX30370.1| NADH dehydrogenase subunit B [Escherichia coli O55:H7 str. USDA
           5905]
 gi|320667871|gb|EFX34779.1| NADH dehydrogenase subunit B [Escherichia coli O157:H7 str. LSU-61]
 gi|323156437|gb|EFZ42592.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli EPECa14]
 gi|323161621|gb|EFZ47506.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli E128010]
 gi|323168543|gb|EFZ54223.1| NADH-quinone oxidoreductase, B subunit [Shigella sonnei 53G]
 gi|323171969|gb|EFZ57613.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli LT-68]
 gi|323176788|gb|EFZ62378.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli 1180]
 gi|323184394|gb|EFZ69770.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli 1357]
 gi|323187988|gb|EFZ73283.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli RN587/1]
 gi|323377841|gb|ADX50109.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli KO11]
 gi|323936577|gb|EGB32864.1| NADH-quinone oxidoreductase [Escherichia coli E1520]
 gi|323941016|gb|EGB37203.1| NADH-quinone oxidoreductase [Escherichia coli E482]
 gi|323944800|gb|EGB40866.1| NADH-quinone oxidoreductase [Escherichia coli H120]
 gi|323952080|gb|EGB47954.1| NADH-quinone oxidoreductase [Escherichia coli H252]
 gi|323956053|gb|EGB51806.1| NADH-quinone oxidoreductase [Escherichia coli H263]
 gi|323961470|gb|EGB57080.1| NADH-quinone oxidoreductase [Escherichia coli H489]
 gi|323967728|gb|EGB63140.1| NADH-quinone oxidoreductase [Escherichia coli M863]
 gi|323973008|gb|EGB68202.1| NADH-quinone oxidoreductase [Escherichia coli TA007]
 gi|323977512|gb|EGB72598.1| NADH-quinone oxidoreductase [Escherichia coli TW10509]
 gi|324006663|gb|EGB75882.1| NADH dehydrogenase subunit B [Escherichia coli MS 57-2]
 gi|324013173|gb|EGB82392.1| NADH dehydrogenase subunit B [Escherichia coli MS 60-1]
 gi|324020883|gb|EGB90102.1| NADH dehydrogenase subunit B [Escherichia coli MS 117-3]
 gi|324112819|gb|EGC06795.1| NADH-quinone oxidoreductase [Escherichia fergusonii B253]
 gi|324117835|gb|EGC11734.1| NADH-quinone oxidoreductase [Escherichia coli E1167]
 gi|325496678|gb|EGC94537.1| NADH dehydrogenase subunit B [Escherichia fergusonii ECD227]
 gi|326339638|gb|EGD63449.1| NADH-ubiquinone oxidoreductase chain B [Escherichia coli O157:H7
           str. 1125]
 gi|326344100|gb|EGD67861.1| NADH-ubiquinone oxidoreductase chain B [Escherichia coli O157:H7
           str. 1044]
 gi|327252557|gb|EGE64216.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli STEC_7v]
 gi|330912112|gb|EGH40622.1| NADH-ubiquinone oxidoreductase chain B [Escherichia coli AA86]
 gi|331039723|gb|EGI11943.1| NADH dehydrogenase I subunit B [Escherichia coli H736]
 gi|331043666|gb|EGI15804.1| NADH dehydrogenase I subunit B [Escherichia coli M605]
 gi|331048578|gb|EGI20654.1| NADH dehydrogenase I subunit B [Escherichia coli M718]
 gi|331056617|gb|EGI28626.1| NADH dehydrogenase I subunit B [Escherichia coli TA206]
 gi|331059601|gb|EGI31578.1| NADH dehydrogenase I subunit B [Escherichia coli TA143]
 gi|331064179|gb|EGI36090.1| NADH dehydrogenase I subunit B [Escherichia coli TA271]
 gi|331069063|gb|EGI40455.1| NADH dehydrogenase I subunit B [Escherichia coli TA280]
 gi|331074693|gb|EGI46013.1| NADH dehydrogenase I subunit B [Escherichia coli H591]
 gi|331078910|gb|EGI50112.1| NADH dehydrogenase I subunit B [Escherichia coli H299]
 gi|332088417|gb|EGI93535.1| NADH-quinone oxidoreductase, B subunit [Shigella boydii 5216-82]
 gi|332090619|gb|EGI95715.1| NADH-quinone oxidoreductase, B subunit [Shigella dysenteriae
           155-74]
 gi|332093356|gb|EGI98414.1| NADH-quinone oxidoreductase, B subunit [Shigella boydii 3594-74]
 gi|332100919|gb|EGJ04265.1| NADH:ubiquinone oxidoreductase chain B [Shigella sp. D9]
 gi|332344068|gb|AEE57402.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli UMNK88]
 gi|332754935|gb|EGJ85300.1| NADH-quinone oxidoreductase, B subunit [Shigella flexneri 4343-70]
 gi|332755336|gb|EGJ85700.1| NADH-quinone oxidoreductase, B subunit [Shigella flexneri K-671]
 gi|332756446|gb|EGJ86797.1| NADH-quinone oxidoreductase, B subunit [Shigella flexneri 2747-71]
 gi|332766106|gb|EGJ96316.1| nuoB [Shigella flexneri 2930-71]
 gi|333001431|gb|EGK20999.1| NADH-quinone oxidoreductase, B subunit [Shigella flexneri VA-6]
 gi|333001890|gb|EGK21456.1| NADH-quinone oxidoreductase, B subunit [Shigella flexneri K-218]
 gi|333002654|gb|EGK22214.1| NADH-quinone oxidoreductase, B subunit [Shigella flexneri K-272]
 gi|333016449|gb|EGK35780.1| NADH-quinone oxidoreductase, B subunit [Shigella flexneri K-304]
 gi|333016538|gb|EGK35868.1| NADH-quinone oxidoreductase, B subunit [Shigella flexneri K-227]
          Length = 220

 Score =  151 bits (381), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 74/160 (46%), Positives = 107/160 (66%), Gaps = 3/160 (1%)

Query: 19  LEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78
           L+K +     +  E+ +K   +  ++ +V W R  S+    FGL+CC VEM+ +    +D
Sbjct: 19  LQKQEIVTDPLEQEV-NKNVFMGKLNDMVNWGRKNSIWPYNFGLSCCYVEMVTSFTAVHD 77

Query: 79  LERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137
           + RFG    RASPRQ+D+M+VAGT   KMA  ++R+YDQM EP++VISMG+CAN GG Y 
Sbjct: 78  VARFGAEVLRASPRQADLMVVAGTCFTKMAPVIQRLYDQMLEPKWVISMGACANSGGMYD 137

Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
             YSVV+G D+ +PVD+Y+PGCPP  EA +  ++LLQ+ I
Sbjct: 138 I-YSVVQGVDKFIPVDVYIPGCPPRPEAYMQALMLLQESI 176


>gi|259907928|ref|YP_002648284.1| NADH dehydrogenase subunit B [Erwinia pyrifoliae Ep1/96]
 gi|224963550|emb|CAX55040.1| NADH dehydrogenase I chain B [Erwinia pyrifoliae Ep1/96]
 gi|283477809|emb|CAY73725.1| NADH dehydrogenase I chain B [Erwinia pyrifoliae DSM 12163]
          Length = 224

 Score =  151 bits (381), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 74/142 (52%), Positives = 97/142 (68%), Gaps = 2/142 (1%)

Query: 37  GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95
           G L  ++  +V W R  SL    FGL+CC VEM  +    +D+ RFG    RASPRQ+D 
Sbjct: 40  GKLEHALHDMVNWGRKNSLWPFNFGLSCCYVEMTTSFTAVHDVARFGSEVIRASPRQADF 99

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
           M+VAGT   KMA  ++R+YDQM EP++VISMG+CAN GG Y   YSVV+G D+ +PVD+Y
Sbjct: 100 MVVAGTCFTKMAPVIQRLYDQMLEPKWVISMGACANSGGMYDI-YSVVQGVDKFLPVDVY 158

Query: 156 VPGCPPTAEALIYGILLLQKKI 177
           +PGCPP  EA +  +LLLQ+ I
Sbjct: 159 IPGCPPRPEAYMQALLLLQESI 180


>gi|322831985|ref|YP_004212012.1| NADH-quinone oxidoreductase, B subunit [Rahnella sp. Y9602]
 gi|321167186|gb|ADW72885.1| NADH-quinone oxidoreductase, B subunit [Rahnella sp. Y9602]
          Length = 224

 Score =  151 bits (381), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 75/142 (52%), Positives = 98/142 (69%), Gaps = 2/142 (1%)

Query: 37  GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95
           G L  S+  +V W R  SL    FGL+CC VEM+ +    +D+ RFG    RASPRQ+D 
Sbjct: 40  GNLQESLHGMVNWGRKNSLWPYNFGLSCCYVEMVTSFTAVHDVARFGAEVLRASPRQADF 99

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
           M+VAGT   KMA  ++R+YDQM EP++VISMG+CAN GG Y   YSVV+G D+ +PVD+Y
Sbjct: 100 MVVAGTCFTKMAPVIQRLYDQMLEPKWVISMGACANSGGMYDI-YSVVQGVDKFLPVDVY 158

Query: 156 VPGCPPTAEALIYGILLLQKKI 177
           +PGCPP  EA +  +LLLQ+ I
Sbjct: 159 IPGCPPRPEAYMQALLLLQESI 180


>gi|71065152|ref|YP_263879.1| NADH dehydrogenase subunit B [Psychrobacter arcticus 273-4]
 gi|123649364|sp|Q4FU63|NUOB_PSYA2 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|71038137|gb|AAZ18445.1| NADH dehydrogenase I, B subunit [Psychrobacter arcticus 273-4]
          Length = 222

 Score =  151 bits (381), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 78/144 (54%), Positives = 96/144 (66%), Gaps = 2/144 (1%)

Query: 37  GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95
           G L   V     W R  SL    FG +CC VE        +DL RFG    RASPRQ+DV
Sbjct: 38  GRLEDLVHSTANWGRKHSLWPFNFGTSCCYVEYATTLTAVHDLSRFGAEVIRASPRQADV 97

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
           MIVAGT   KMA  ++R+Y+QM EP++VISMG+CAN GG Y   YSVV+G D+I+PVD+Y
Sbjct: 98  MIVAGTCFVKMAPVIQRLYEQMLEPKWVISMGACANSGGMYDI-YSVVQGVDKIIPVDVY 156

Query: 156 VPGCPPTAEALIYGILLLQKKIRR 179
           VPGCPP  EALI G++LLQ+ I +
Sbjct: 157 VPGCPPRPEALIQGLMLLQESITK 180


>gi|304413372|ref|ZP_07394845.1| NADH:ubiquinone oxidoreductase, chain B [Candidatus Regiella
           insecticola LSR1]
 gi|304284215|gb|EFL92608.1| NADH:ubiquinone oxidoreductase, chain B [Candidatus Regiella
           insecticola LSR1]
          Length = 225

 Score =  151 bits (381), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 74/144 (51%), Positives = 99/144 (68%), Gaps = 2/144 (1%)

Query: 37  GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95
           G L  ++  +V W R  SL    FGL+CC VEM+ +    +D+ RFG    RASPRQ+D 
Sbjct: 41  GKLENALHDMVNWGRKNSLWPYNFGLSCCYVEMVTSFTAVHDVARFGAEVLRASPRQADF 100

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
           M+VAGT   KMA  ++R+Y+QM EP++VISMG+CAN GG Y   YSVV+G D+ +PVD+Y
Sbjct: 101 MVVAGTCFTKMAPVIQRLYEQMLEPKWVISMGACANSGGMYDI-YSVVQGVDKFLPVDVY 159

Query: 156 VPGCPPTAEALIYGILLLQKKIRR 179
           +PGCPP  EA +  +LLLQK I +
Sbjct: 160 IPGCPPRPEAYMQALLLLQKSIDK 183


>gi|93005404|ref|YP_579841.1| NADH dehydrogenase subunit B [Psychrobacter cryohalolentis K5]
 gi|122415842|sp|Q1QD96|NUOB_PSYCK RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|92393082|gb|ABE74357.1| NADH-quinone oxidoreductase, B subunit [Psychrobacter
           cryohalolentis K5]
          Length = 222

 Score =  151 bits (381), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 78/144 (54%), Positives = 96/144 (66%), Gaps = 2/144 (1%)

Query: 37  GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95
           G L   V     W R  SL    FG +CC VE        +DL RFG    RASPRQ+DV
Sbjct: 38  GRLEDLVHSTANWGRKHSLWPFNFGTSCCYVEYATTLTAVHDLSRFGAEVIRASPRQADV 97

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
           MIVAGT   KMA  ++R+Y+QM EP++VISMG+CAN GG Y   YSVV+G D+I+PVD+Y
Sbjct: 98  MIVAGTCFVKMAPVIQRLYEQMLEPKWVISMGACANSGGMYDI-YSVVQGVDKIIPVDVY 156

Query: 156 VPGCPPTAEALIYGILLLQKKIRR 179
           VPGCPP  EALI G++LLQ+ I +
Sbjct: 157 VPGCPPRPEALIQGLMLLQESITK 180


>gi|283778533|ref|YP_003369288.1| NADH-quinone oxidoreductase, B subunit [Pirellula staleyi DSM 6068]
 gi|283436986|gb|ADB15428.1| NADH-quinone oxidoreductase, B subunit [Pirellula staleyi DSM 6068]
          Length = 192

 Score =  151 bits (381), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 73/149 (48%), Positives = 98/149 (65%), Gaps = 2/149 (1%)

Query: 36  KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSD 94
           +  +VT +D+L  W R  SL  M F  ACC +E+M     R+DL RFG    R SPRQ D
Sbjct: 7   ENVMVTKLDELANWCRKNSLWPMPFATACCGIELMATGASRHDLARFGAEVFRFSPRQCD 66

Query: 95  VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154
           +MIVAG +  KM   L+R++ QM EP++ ISMG+CA+ GG +  +Y+VV+G DR +PVD+
Sbjct: 67  LMIVAGRVVMKMLPVLQRIWQQMHEPKWCISMGACASTGGVFD-TYAVVQGIDRFIPVDM 125

Query: 155 YVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           YVPGCPP  E L   I+ LQ KI+R G +
Sbjct: 126 YVPGCPPRPEQLTQAIIDLQDKIQREGTI 154


>gi|300918548|ref|ZP_07135138.1| NADH dehydrogenase subunit B [Escherichia coli MS 115-1]
 gi|300414283|gb|EFJ97593.1| NADH dehydrogenase subunit B [Escherichia coli MS 115-1]
          Length = 220

 Score =  150 bits (380), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 71/144 (49%), Positives = 100/144 (69%), Gaps = 2/144 (1%)

Query: 35  HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQS 93
           +K   +  ++ +V W R  S+    FGL+CC VEM+ +    +D+ RFG    RASPRQ+
Sbjct: 34  NKNVFMGKLNDMVNWGRKNSIWPYNFGLSCCYVEMVTSFTAVHDVARFGAEVLRASPRQA 93

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD 153
           D+M+VAGT   KMA  ++R+YDQM EP++VISMG+CAN GG Y   YSVV+G D+ +PVD
Sbjct: 94  DLMVVAGTCFTKMAPVIQRLYDQMLEPKWVISMGACANSGGMYDI-YSVVQGVDKFIPVD 152

Query: 154 IYVPGCPPTAEALIYGILLLQKKI 177
           +Y+PGCPP  EA +  ++LLQ+ I
Sbjct: 153 VYIPGCPPRPEAYMQALMLLQESI 176


>gi|301026957|ref|ZP_07190350.1| NADH dehydrogenase subunit B [Escherichia coli MS 196-1]
 gi|299879504|gb|EFI87715.1| NADH dehydrogenase subunit B [Escherichia coli MS 196-1]
          Length = 220

 Score =  150 bits (380), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 71/144 (49%), Positives = 100/144 (69%), Gaps = 2/144 (1%)

Query: 35  HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQS 93
           +K   +  ++ +V W R  S+    FGL+CC VEM+ +    +D+ RFG    RASPRQ+
Sbjct: 34  NKNVFMGKLNDMVNWGRKNSIWPYNFGLSCCYVEMVTSFTAVHDVARFGAEVLRASPRQA 93

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD 153
           D+M+VAGT   KMA  ++R+YDQM EP++VISMG+CAN GG Y   YSVV+G D+ +PVD
Sbjct: 94  DLMVVAGTCFTKMAPVIQRLYDQMLEPKWVISMGACANSGGMYDI-YSVVQGVDKFIPVD 152

Query: 154 IYVPGCPPTAEALIYGILLLQKKI 177
           +Y+PGCPP  EA +  ++LLQ+ I
Sbjct: 153 VYIPGCPPRPEAYMQALMLLQESI 176


>gi|23092541|gb|AAN08352.1| NADH dehydrogenase I subunit B [Photorhabdus temperata subsp.
           temperata]
          Length = 224

 Score =  150 bits (380), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 74/142 (52%), Positives = 97/142 (68%), Gaps = 2/142 (1%)

Query: 37  GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95
           G L  ++  LV W R  SL    FGL+CC VEM  +    +D+ RFG    RASPRQ+D 
Sbjct: 40  GKLEHALHDLVNWGRKNSLWPYNFGLSCCYVEMATSFTAVHDVARFGAEVLRASPRQADF 99

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
           M+VAGT   KMA  ++R+YDQM EP++VISMG+CAN GG Y   YSVV+G D+ +PVD+Y
Sbjct: 100 MVVAGTCFTKMAPVIQRLYDQMLEPKWVISMGACANSGGMYDI-YSVVQGVDKFIPVDVY 158

Query: 156 VPGCPPTAEALIYGILLLQKKI 177
           +PGCPP  EA +  ++LLQ+ I
Sbjct: 159 IPGCPPRPEAYMQALMLLQESI 180


>gi|290489748|gb|ADD31258.1| NADH-plastoquinone oxidoreductase subunit K protein [Trochodendron
           aralioides]
          Length = 285

 Score =  150 bits (380), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 67/147 (45%), Positives = 100/147 (68%), Gaps = 1/147 (0%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
           T    + T+ + L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPRQ+
Sbjct: 73  TQNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 132

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152
           D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++PV
Sbjct: 133 DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 192

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179
            +Y+PGCPP  EA++  I  L+KK+ R
Sbjct: 193 HVYLPGCPPKPEAVMDAITKLRKKVSR 219


>gi|310768164|gb|ADP13114.1| NADH dehydrogenase subunit B [Erwinia sp. Ejp617]
          Length = 224

 Score =  150 bits (380), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 74/142 (52%), Positives = 97/142 (68%), Gaps = 2/142 (1%)

Query: 37  GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95
           G L  ++  +V W R  SL    FGL+CC VEM  +    +D+ RFG    RASPRQ+D 
Sbjct: 40  GKLEHALHDMVNWGRKNSLWPFNFGLSCCYVEMTTSFTAVHDVARFGSEVIRASPRQADF 99

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
           M+VAGT   KMA  ++R+YDQM EP++VISMG+CAN GG Y   YSVV+G D+ +PVD+Y
Sbjct: 100 MVVAGTCFTKMAPVVQRLYDQMLEPKWVISMGACANSGGMYDI-YSVVQGVDKFLPVDVY 158

Query: 156 VPGCPPTAEALIYGILLLQKKI 177
           +PGCPP  EA +  +LLLQ+ I
Sbjct: 159 IPGCPPRPEAYMQALLLLQESI 180


>gi|213022740|ref|ZP_03337187.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
           serovar Typhi str. 404ty]
          Length = 184

 Score =  150 bits (380), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 75/160 (46%), Positives = 105/160 (65%), Gaps = 2/160 (1%)

Query: 19  LEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78
           L+K +     +  E+  K    T+   +V W R  S+    FGL+CC VEM+ +    +D
Sbjct: 19  LQKQEIVTDPLEQEVKQKRVHGTNCMTVVNWGRKNSIWPYNFGLSCCYVEMVTSFTAVHD 78

Query: 79  LERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137
           + RFG    RASPRQ+D+M+VAGT   KMA  ++R+YDQM EP++VISMG+CAN GG Y 
Sbjct: 79  VARFGAEVLRASPRQADLMVVAGTCFTKMAPVIQRLYDQMLEPKWVISMGACANSGGMYD 138

Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
             YSVV+G D+ +PVD+Y+PGCPP  EA +  ++LLQ+ I
Sbjct: 139 I-YSVVQGVDKFIPVDVYIPGCPPRPEAYMQALMLLQESI 177


>gi|308232348|ref|ZP_07415800.2| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis
           SUMu001]
 gi|308370160|ref|ZP_07420526.2| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis
           SUMu002]
 gi|308371244|ref|ZP_07424331.2| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis
           SUMu003]
 gi|308372436|ref|ZP_07428696.2| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis
           SUMu004]
 gi|308374785|ref|ZP_07437401.2| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis
           SUMu006]
 gi|308376000|ref|ZP_07445800.2| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis
           SUMu007]
 gi|308377233|ref|ZP_07441611.2| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis
           SUMu008]
 gi|308378201|ref|ZP_07668686.1| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis
           SUMu009]
 gi|308380583|ref|ZP_07490460.2| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis
           SUMu011]
 gi|308214175|gb|EFO73574.1| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis
           SUMu001]
 gi|308324950|gb|EFP13801.1| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis
           SUMu002]
 gi|308329366|gb|EFP18217.1| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis
           SUMu003]
 gi|308333195|gb|EFP22046.1| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis
           SUMu004]
 gi|308340526|gb|EFP29377.1| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis
           SUMu006]
 gi|308344466|gb|EFP33317.1| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis
           SUMu007]
 gi|308348462|gb|EFP37313.1| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis
           SUMu008]
 gi|308353092|gb|EFP41943.1| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis
           SUMu009]
 gi|308361019|gb|EFP49870.1| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis
           SUMu011]
          Length = 157

 Score =  150 bits (380), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 69/127 (54%), Positives = 99/127 (77%), Gaps = 3/127 (2%)

Query: 56  MW-MTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRV 113
           MW  TFGLACCA+EMM  + PR+D+ RFG     A+PRQ+D+MIVAG ++ KMA  LR++
Sbjct: 1   MWPATFGLACCAIEMMATAGPRFDIARFGMERFSATPRQADLMIVAGRVSQKMAPVLRQI 60

Query: 114 YDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLL 173
           YDQM EP++V++MG CA+ GG ++ +Y++V+G D +VPVDIY+PGCPP  E L++ IL L
Sbjct: 61  YDQMAEPKWVLAMGVCASSGGMFN-NYAIVQGVDHVVPVDIYLPGCPPRPEMLLHAILKL 119

Query: 174 QKKIRRV 180
            +KI+++
Sbjct: 120 HEKIQQM 126


>gi|118576844|ref|YP_876587.1| NADH-ubiquinone oxidoreductase, subunit B [Cenarchaeum symbiosum A]
 gi|118195365|gb|ABK78283.1| NADH-ubiquinone oxidoreductase, subunit B [Cenarchaeum symbiosum A]
          Length = 160

 Score =  150 bits (380), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 74/135 (54%), Positives = 95/135 (70%), Gaps = 1/135 (0%)

Query: 47  VTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR-ASPRQSDVMIVAGTLTNK 105
           + W R  SL  +    ACC+VE   AS P+YD+ERFG      S RQ D+++V GT+T K
Sbjct: 20  INWGRIWSLWPVHIETACCSVEFGAASGPKYDVERFGIIEAFGSLRQCDLIVVQGTITRK 79

Query: 106 MASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEA 165
           MA  LR VYDQMPEP+YVI+MG+CA  GG Y  SY+V+ G D ++PVD+YVPGCPP  E 
Sbjct: 80  MAPRLRLVYDQMPEPKYVIAMGACAITGGLYFDSYNVLPGIDGVLPVDVYVPGCPPRPET 139

Query: 166 LIYGILLLQKKIRRV 180
           LI G +LLQ+KI+R+
Sbjct: 140 LIQGCMLLQEKIKRM 154


>gi|37526976|ref|NP_930320.1| NADH dehydrogenase subunit B [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|81572443|sp|Q7N2I8|NUOB_PHOLL RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|36786409|emb|CAE15462.1| NADH dehydrogenase I chain B (NADH-ubiquinone oxidoreductase chain
           2) (NUO2) [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 224

 Score =  150 bits (380), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 74/142 (52%), Positives = 97/142 (68%), Gaps = 2/142 (1%)

Query: 37  GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95
           G L  ++  +V W R  SL    FGL+CC VEM  +    +D+ RFG    RASPRQ+D 
Sbjct: 40  GKLEHALHDMVNWGRKNSLWPYNFGLSCCYVEMATSFTAVHDVARFGAEVLRASPRQADF 99

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
           M+VAGT   KMA  ++R+YDQM EP++VISMG+CAN GG Y   YSVV+G D+ +PVD+Y
Sbjct: 100 MVVAGTCFTKMAPVIQRLYDQMLEPKWVISMGACANSGGMYDI-YSVVQGVDKFIPVDVY 158

Query: 156 VPGCPPTAEALIYGILLLQKKI 177
           +PGCPP  EA +  +LLLQ+ I
Sbjct: 159 IPGCPPRPEAYMQALLLLQESI 180


>gi|238753753|ref|ZP_04615114.1| NADH-quinone oxidoreductase subunit B [Yersinia ruckeri ATCC 29473]
 gi|238707989|gb|EEQ00346.1| NADH-quinone oxidoreductase subunit B [Yersinia ruckeri ATCC 29473]
          Length = 225

 Score =  150 bits (379), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 77/168 (45%), Positives = 108/168 (64%), Gaps = 6/168 (3%)

Query: 11  ISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMM 70
           +  Q + S + ++ D  R      + G L  ++  +V W R  SL    FGL+CC VEM+
Sbjct: 19  LQSQETISGDPLEQDIHRS----VYMGKLEHAMHDMVNWGRKNSLWPYNFGLSCCYVEMV 74

Query: 71  QASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSC 129
            +    +D+ RFG    RASPRQ+D M+VAGT   KMA  ++R+Y+QM EP++VISMG+C
Sbjct: 75  TSFTAVHDVARFGAEVLRASPRQADFMVVAGTCFTKMAPVIQRLYEQMLEPKWVISMGAC 134

Query: 130 ANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
           AN GG Y   YSVV+G D+ +PVD+Y+PGCPP  EA +  +LLLQ+ I
Sbjct: 135 ANSGGMYDI-YSVVQGVDKFLPVDVYIPGCPPRPEAYMQALLLLQESI 181


>gi|300717650|ref|YP_003742453.1| NADH dehydrogenase I chain B [Erwinia billingiae Eb661]
 gi|299063486|emb|CAX60606.1| NADH dehydrogenase I chain B [Erwinia billingiae Eb661]
          Length = 224

 Score =  150 bits (379), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 74/142 (52%), Positives = 97/142 (68%), Gaps = 2/142 (1%)

Query: 37  GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95
           G L  ++  +V W R  SL    FGL+CC VEM  +    +D+ RFG    RASPRQ+D 
Sbjct: 40  GKLEHAMHDMVNWGRKNSLWPFNFGLSCCYVEMTTSFTSVHDVARFGSEVIRASPRQADF 99

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
           M+VAGT   KMA  ++R+YDQM EP++VISMG+CAN GG Y   YSVV+G D+ +PVD+Y
Sbjct: 100 MVVAGTCFTKMAPVVQRLYDQMLEPKWVISMGACANSGGMYDI-YSVVQGVDKFLPVDVY 158

Query: 156 VPGCPPTAEALIYGILLLQKKI 177
           +PGCPP  EA +  +LLLQ+ I
Sbjct: 159 IPGCPPRPEAYMQALLLLQESI 180


>gi|188533348|ref|YP_001907145.1| NADH dehydrogenase subunit B [Erwinia tasmaniensis Et1/99]
 gi|238065142|sp|B2VIV4|NUOB_ERWT9 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|188028390|emb|CAO96251.1| NADH dehydrogenase I chain B [Erwinia tasmaniensis Et1/99]
          Length = 224

 Score =  150 bits (379), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 74/142 (52%), Positives = 97/142 (68%), Gaps = 2/142 (1%)

Query: 37  GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95
           G L  ++  +V W R  SL    FGL+CC VEM  +    +D+ RFG    RASPRQ+D 
Sbjct: 40  GKLEHALHDMVNWGRKNSLWPFNFGLSCCYVEMTTSFTAVHDVARFGSEVIRASPRQADF 99

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
           M+VAGT   KMA  ++R+YDQM EP++VISMG+CAN GG Y   YSVV+G D+ +PVD+Y
Sbjct: 100 MVVAGTCFTKMAPVVQRLYDQMLEPKWVISMGACANSGGMYDI-YSVVQGVDKFLPVDVY 158

Query: 156 VPGCPPTAEALIYGILLLQKKI 177
           +PGCPP  EA +  +LLLQ+ I
Sbjct: 159 IPGCPPRPEAYMQALLLLQESI 180


>gi|71892265|ref|YP_277999.1| NADH dehydrogenase subunit B [Candidatus Blochmannia pennsylvanicus
           str. BPEN]
 gi|123640866|sp|Q492H7|NUOB_BLOPB RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|71796371|gb|AAZ41122.1| NADH dehydrogenase I chain B, binds FeS cluster N2 [Candidatus
           Blochmannia pennsylvanicus str. BPEN]
          Length = 236

 Score =  150 bits (379), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 75/142 (52%), Positives = 97/142 (68%), Gaps = 2/142 (1%)

Query: 37  GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95
           G L   + ++V W R  SL    FGL+CC VEM  A    +D+ RFG    RASPRQ+D 
Sbjct: 41  GKLSAFLHKIVNWGRGNSLWPYNFGLSCCYVEMTTAFTAIHDVARFGSEVLRASPRQADF 100

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
           M++AGT   KM   ++R+YDQM EP++VISMG+CAN GG Y   YSVV+G D+ +PVD+Y
Sbjct: 101 MVIAGTPFLKMVPVIQRLYDQMLEPKWVISMGACANSGGMYDI-YSVVQGVDKFLPVDLY 159

Query: 156 VPGCPPTAEALIYGILLLQKKI 177
           +PGCPP  EA I G+LLL+K I
Sbjct: 160 IPGCPPRPEAYIQGLLLLKKSI 181


>gi|227488707|ref|ZP_03919023.1| NADH dehydrogenase subunit B [Corynebacterium glucuronolyticum ATCC
           51867]
 gi|227542294|ref|ZP_03972343.1| NADH dehydrogenase subunit B [Corynebacterium glucuronolyticum ATCC
           51866]
 gi|227091368|gb|EEI26680.1| NADH dehydrogenase subunit B [Corynebacterium glucuronolyticum ATCC
           51867]
 gi|227181894|gb|EEI62866.1| NADH dehydrogenase subunit B [Corynebacterium glucuronolyticum ATCC
           51866]
          Length = 189

 Score =  150 bits (379), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 74/148 (50%), Positives = 103/148 (69%), Gaps = 2/148 (1%)

Query: 37  GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95
           G+L T+ + L    R  S+   TFGLACCA EMM  + PRYD  R+G    RASPRQ+D+
Sbjct: 10  GYLTTTTEWLFGLTREWSVWPATFGLACCAFEMMSYAGPRYDSSRWGQEVFRASPRQADL 69

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
           +IV+G ++ KMA  +RRVYDQMP+P++VI+MG+C++ GG ++ +Y++V+G D IVPVD+Y
Sbjct: 70  LIVSGRVSQKMAPIMRRVYDQMPDPKWVIAMGACSSSGGIFN-NYAIVQGADHIVPVDVY 128

Query: 156 VPGCPPTAEALIYGILLLQKKIRRVGNV 183
           VPGCPP  E LI     L+  I +   V
Sbjct: 129 VPGCPPRPEMLIDASFKLRAIIAKQTKV 156


>gi|15597834|ref|NP_251328.1| NADH dehydrogenase subunit B [Pseudomonas aeruginosa PAO1]
 gi|107102158|ref|ZP_01366076.1| hypothetical protein PaerPA_01003208 [Pseudomonas aeruginosa PACS2]
 gi|116050625|ref|YP_790556.1| NADH dehydrogenase subunit B [Pseudomonas aeruginosa UCBPP-PA14]
 gi|218891201|ref|YP_002440067.1| NADH dehydrogenase subunit B [Pseudomonas aeruginosa LESB58]
 gi|254235623|ref|ZP_04928946.1| NADH dehydrogenase I chain B [Pseudomonas aeruginosa C3719]
 gi|254241070|ref|ZP_04934392.1| NADH dehydrogenase I chain B [Pseudomonas aeruginosa 2192]
 gi|296388901|ref|ZP_06878376.1| NADH dehydrogenase subunit B [Pseudomonas aeruginosa PAb1]
 gi|313107676|ref|ZP_07793858.1| NADH dehydrogenase I chain B [Pseudomonas aeruginosa 39016]
 gi|81622300|sp|Q9I0K0|NUOB_PSEAE RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|122259748|sp|Q02ND0|NUOB_PSEAB RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|238065194|sp|B7VAR4|NUOB_PSEA8 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|9948706|gb|AAG06026.1|AE004692_5 NADH dehydrogenase I chain B [Pseudomonas aeruginosa PAO1]
 gi|115585846|gb|ABJ11861.1| NADH dehydrogenase I chain B [Pseudomonas aeruginosa UCBPP-PA14]
 gi|126167554|gb|EAZ53065.1| NADH dehydrogenase I chain B [Pseudomonas aeruginosa C3719]
 gi|126194448|gb|EAZ58511.1| NADH dehydrogenase I chain B [Pseudomonas aeruginosa 2192]
 gi|218771426|emb|CAW27193.1| NADH dehydrogenase I chain B [Pseudomonas aeruginosa LESB58]
 gi|310880360|gb|EFQ38954.1| NADH dehydrogenase I chain B [Pseudomonas aeruginosa 39016]
          Length = 225

 Score =  150 bits (379), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 74/142 (52%), Positives = 97/142 (68%), Gaps = 2/142 (1%)

Query: 37  GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95
           G L   ++  V W R  SL    FGL+CC VEM  A    +D+ RFG    RASPRQ+D 
Sbjct: 41  GKLEDVLNSTVNWGRKNSLWPYNFGLSCCYVEMTTAFTAPHDIARFGAEVIRASPRQADF 100

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
           M++AGT   KMA  ++R+Y+QM EP++VISMGSCAN GG Y   YSVV+G D+ +PVD+Y
Sbjct: 101 MVIAGTCFIKMAPVIQRLYEQMLEPKWVISMGSCANSGGMYDI-YSVVQGVDKFLPVDVY 159

Query: 156 VPGCPPTAEALIYGILLLQKKI 177
           +PGCPP  EA + G++LLQ+ I
Sbjct: 160 IPGCPPRPEAFLQGLMLLQESI 181


>gi|330810464|ref|YP_004354926.1| NADH-quinone oxidoreductase subunit B [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|9719438|gb|AAF97798.1|AF281148_2 NADH dehydrogenase I subunit B [Pseudomonas fluorescens]
 gi|327378572|gb|AEA69922.1| NADH-quinone oxidoreductase subunit B [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 224

 Score =  150 bits (379), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 75/142 (52%), Positives = 97/142 (68%), Gaps = 2/142 (1%)

Query: 37  GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95
           G L   ++  V W R  SL    FGL+CC VEM  A    +D+ RFG    RASPRQ+D 
Sbjct: 40  GKLEDVLNSTVNWGRKNSLWPYNFGLSCCYVEMTTAFTAPHDIARFGAEVIRASPRQADF 99

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
           M++AGT   KMA  ++R+Y+QM EP++VISMGSCAN GG Y   YSVV+G D+ +PVD+Y
Sbjct: 100 MVIAGTCFIKMAPIIQRLYEQMLEPKWVISMGSCANSGGMYDI-YSVVQGVDKFLPVDVY 158

Query: 156 VPGCPPTAEALIYGILLLQKKI 177
           VPGCPP  EA + G++LLQ+ I
Sbjct: 159 VPGCPPRPEAFLQGLMLLQESI 180


>gi|260551032|ref|ZP_05825237.1| NADH:ubiquinone oxidoreductase 20 kDa subunit [Acinetobacter sp.
           RUH2624]
 gi|262280145|ref|ZP_06057930.1| NADH-quinone oxidoreductase subunit C/D [Acinetobacter
           calcoaceticus RUH2202]
 gi|299771418|ref|YP_003733444.1| NADH dehydrogenase subunit B [Acinetobacter sp. DR1]
 gi|260405980|gb|EEW99467.1| NADH:ubiquinone oxidoreductase 20 kDa subunit [Acinetobacter sp.
           RUH2624]
 gi|262260496|gb|EEY79229.1| NADH-quinone oxidoreductase subunit C/D [Acinetobacter
           calcoaceticus RUH2202]
 gi|298701506|gb|ADI92071.1| NADH dehydrogenase subunit B [Acinetobacter sp. DR1]
          Length = 225

 Score =  150 bits (379), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 78/154 (50%), Positives = 100/154 (64%), Gaps = 5/154 (3%)

Query: 29  ISSEITHKGFLVTSVDQL---VTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA 85
           +  E+    F+    D L   V W R  SL    FG +CC VE        +DL RFG  
Sbjct: 27  LEEEVNKNVFMTRLEDVLHTAVNWGRKNSLWPFNFGTSCCYVEYATTLTGVHDLSRFGAE 86

Query: 86  P-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR 144
             RASPRQ+D+MIVAGT   KMA  ++R+Y+QM EP++VISMG+CAN GG Y   YSVV+
Sbjct: 87  VIRASPRQADLMIVAGTCFVKMAPVIQRLYEQMLEPKWVISMGACANSGGMYDI-YSVVQ 145

Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           G D+I+PVD+YVPGCPP  EALI  ++LLQ +I+
Sbjct: 146 GVDKIIPVDVYVPGCPPRPEALIQALMLLQDQIQ 179


>gi|293609138|ref|ZP_06691441.1| NADH-quinone oxidoreductase [Acinetobacter sp. SH024]
 gi|292829711|gb|EFF88073.1| NADH-quinone oxidoreductase [Acinetobacter sp. SH024]
 gi|325121082|gb|ADY80605.1| NADH dehydrogenase I chain B [Acinetobacter calcoaceticus PHEA-2]
          Length = 225

 Score =  150 bits (379), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 78/154 (50%), Positives = 100/154 (64%), Gaps = 5/154 (3%)

Query: 29  ISSEITHKGFLVTSVDQL---VTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA 85
           +  E+    F+    D L   V W R  SL    FG +CC VE        +DL RFG  
Sbjct: 27  LEEEVNKNVFMTRLEDVLHTAVNWGRKNSLWPFNFGTSCCYVEYATTLTGVHDLSRFGAE 86

Query: 86  P-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR 144
             RASPRQ+D+MIVAGT   KMA  ++R+Y+QM EP++VISMG+CAN GG Y   YSVV+
Sbjct: 87  VIRASPRQADLMIVAGTCFVKMAPVIQRLYEQMLEPKWVISMGACANSGGMYDI-YSVVQ 145

Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           G D+I+PVD+YVPGCPP  EALI  ++LLQ +I+
Sbjct: 146 GVDKIIPVDVYVPGCPPRPEALIQALMLLQDQIQ 179


>gi|326567954|gb|EGE18051.1| NADH dehydrogenase subunit B [Moraxella catarrhalis BC1]
 gi|326577449|gb|EGE27333.1| NADH dehydrogenase subunit B [Moraxella catarrhalis O35E]
          Length = 223

 Score =  150 bits (379), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 78/144 (54%), Positives = 95/144 (65%), Gaps = 2/144 (1%)

Query: 37  GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95
           G L      L  W R  SL    FG +CC VE        +DL RFG    RASPRQ+DV
Sbjct: 38  GRLSDLTHNLANWGRKNSLWPFNFGTSCCYVEYATTLTGVHDLSRFGAEVIRASPRQADV 97

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
           MIVAGT   KMA  + R+Y+QM EP++VISMG+CAN GG Y   YSVV+G D+I+PVD+Y
Sbjct: 98  MIVAGTCFVKMAPVILRLYEQMLEPKWVISMGACANSGGMYDI-YSVVQGVDKILPVDVY 156

Query: 156 VPGCPPTAEALIYGILLLQKKIRR 179
           VPGCPP  EALI  I+LLQ+ I++
Sbjct: 157 VPGCPPRPEALIQAIMLLQESIQK 180


>gi|283786355|ref|YP_003366220.1| NADH-quinone oxidoreductase subunit B [Citrobacter rodentium
           ICC168]
 gi|282949809|emb|CBG89432.1| NADH-quinone oxidoreductase subunit B [Citrobacter rodentium
           ICC168]
          Length = 220

 Score =  150 bits (379), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 75/160 (46%), Positives = 105/160 (65%), Gaps = 3/160 (1%)

Query: 19  LEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78
           L+K +     +  E+ +K   +  +  LV W R  S+    FGL+CC VEM+ +    +D
Sbjct: 19  LQKQEIVTDPLEQEV-NKNVFMGKLHDLVNWGRKNSIWPYNFGLSCCYVEMVTSFTAVHD 77

Query: 79  LERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137
           + RFG    RASPRQ+D+M+VAGT   KMA  ++R+YDQM EP++VISMG+CAN GG Y 
Sbjct: 78  VARFGAEVLRASPRQADLMVVAGTCFTKMAPVIQRLYDQMLEPKWVISMGACANSGGMYD 137

Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
             YSVV+G D+ +PVD+Y+PGCPP  EA +  ++LLQ  I
Sbjct: 138 I-YSVVQGVDKFIPVDVYIPGCPPRPEAYMQALMLLQDSI 176


>gi|397899|emb|CAA48361.1| NADH dehydrogenase I, subunit nuoB [Escherichia coli]
          Length = 220

 Score =  150 bits (378), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 74/160 (46%), Positives = 106/160 (66%), Gaps = 3/160 (1%)

Query: 19  LEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78
           L+K +     +  E+ +K   +  ++ +V W R  S+    FGL+CC VEM+      +D
Sbjct: 19  LQKQEIVTDPLEQEV-NKNVFMGKLNDMVNWGRKNSIWPYNFGLSCCYVEMVTLFTAVHD 77

Query: 79  LERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137
           + RFG    RASPRQ+D+M+VAGT   KMA  ++R+YDQM EP++VISMG+CAN GG Y 
Sbjct: 78  VARFGAEVLRASPRQADLMVVAGTCFTKMAPVIQRLYDQMLEPKWVISMGACANSGGMYD 137

Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
             YSVV+G D+ +PVD+Y+PGCPP  EA +  ++LLQ+ I
Sbjct: 138 I-YSVVQGVDKFIPVDVYIPGCPPRPEAYMQALMLLQESI 176


>gi|169634180|ref|YP_001707916.1| NADH dehydrogenase subunit B [Acinetobacter baumannii SDF]
 gi|169797057|ref|YP_001714850.1| NADH dehydrogenase subunit B [Acinetobacter baumannii AYE]
 gi|184157030|ref|YP_001845369.1| NADH dehydrogenase subunit B [Acinetobacter baumannii ACICU]
 gi|213156537|ref|YP_002318198.1| NADH dehydrogenase I chain B [Acinetobacter baumannii AB0057]
 gi|215484518|ref|YP_002326753.1| NAD(P)H-quinone oxidoreductase subunit K [Acinetobacter baumannii
           AB307-0294]
 gi|239501293|ref|ZP_04660603.1| NADH dehydrogenase subunit B [Acinetobacter baumannii AB900]
 gi|260555651|ref|ZP_05827871.1| NADH:ubiquinone oxidoreductase 20 kDa subunit [Acinetobacter
           baumannii ATCC 19606]
 gi|301347793|ref|ZP_07228534.1| NADH dehydrogenase subunit B [Acinetobacter baumannii AB056]
 gi|301510628|ref|ZP_07235865.1| NADH dehydrogenase subunit B [Acinetobacter baumannii AB058]
 gi|301595913|ref|ZP_07240921.1| NADH dehydrogenase subunit B [Acinetobacter baumannii AB059]
 gi|332852146|ref|ZP_08433973.1| NADH dehydrogenase I subunit B [Acinetobacter baumannii 6013150]
 gi|332867545|ref|ZP_08437698.1| NADH dehydrogenase I subunit B [Acinetobacter baumannii 6013113]
 gi|332872605|ref|ZP_08440573.1| NADH dehydrogenase I subunit B [Acinetobacter baumannii 6014059]
 gi|238065045|sp|B7GZC0|NUOB_ACIB3 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|238065046|sp|B7I740|NUOB_ACIB5 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|238065047|sp|B2HU42|NUOB_ACIBC RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|238065048|sp|B0VU55|NUOB_ACIBS RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|238065065|sp|B0V7U7|NUOB_ACIBY RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|238065077|sp|A3M2P9|NUOB_ACIBT RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|169149984|emb|CAM87878.1| NADH dehydrogenase I chain B [Acinetobacter baumannii AYE]
 gi|169152972|emb|CAP02018.1| NADH dehydrogenase I chain B [Acinetobacter baumannii]
 gi|183208624|gb|ACC56022.1| NADH:ubiquinone oxidoreductase 20 kD subunit [Acinetobacter
           baumannii ACICU]
 gi|193076535|gb|ABO11193.2| NADH dehydrogenase I chain B [Acinetobacter baumannii ATCC 17978]
 gi|213055697|gb|ACJ40599.1| NADH dehydrogenase I chain B [Acinetobacter baumannii AB0057]
 gi|213987919|gb|ACJ58218.1| NAD(P)H-quinone oxidoreductase subunit K [Acinetobacter baumannii
           AB307-0294]
 gi|260410562|gb|EEX03860.1| NADH:ubiquinone oxidoreductase 20 kDa subunit [Acinetobacter
           baumannii ATCC 19606]
 gi|322506929|gb|ADX02383.1| nuoB [Acinetobacter baumannii 1656-2]
 gi|323516796|gb|ADX91177.1| NADH dehydrogenase subunit B [Acinetobacter baumannii TCDC-AB0715]
 gi|332729518|gb|EGJ60857.1| NADH dehydrogenase I subunit B [Acinetobacter baumannii 6013150]
 gi|332733962|gb|EGJ65107.1| NADH dehydrogenase I subunit B [Acinetobacter baumannii 6013113]
 gi|332739134|gb|EGJ69993.1| NADH dehydrogenase I subunit B [Acinetobacter baumannii 6014059]
          Length = 225

 Score =  150 bits (378), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 78/154 (50%), Positives = 100/154 (64%), Gaps = 5/154 (3%)

Query: 29  ISSEITHKGFLVTSVDQL---VTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA 85
           +  E+    F+    D L   V W R  SL    FG +CC VE        +DL RFG  
Sbjct: 27  LEEEVNKNVFMTRLEDVLHTAVNWGRKNSLWPFNFGTSCCYVEYATTLTGVHDLSRFGAE 86

Query: 86  P-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR 144
             RASPRQ+D+MIVAGT   KMA  ++R+Y+QM EP++VISMG+CAN GG Y   YSVV+
Sbjct: 87  VIRASPRQADLMIVAGTCFVKMAPVIQRLYEQMLEPKWVISMGACANSGGMYDI-YSVVQ 145

Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           G D+I+PVD+YVPGCPP  EALI  ++LLQ +I+
Sbjct: 146 GVDKIIPVDVYVPGCPPRPEALIQALMLLQDQIQ 179


>gi|296112931|ref|YP_003626869.1| NADH-quinone oxidoreductase subunit B [Moraxella catarrhalis RH4]
 gi|295920625|gb|ADG60976.1| NADH-quinone oxidoreductase subunit B [Moraxella catarrhalis RH4]
 gi|326561154|gb|EGE11519.1| NADH dehydrogenase subunit B [Moraxella catarrhalis 7169]
          Length = 223

 Score =  150 bits (378), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 78/144 (54%), Positives = 95/144 (65%), Gaps = 2/144 (1%)

Query: 37  GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95
           G L      L  W R  SL    FG +CC VE        +DL RFG    RASPRQ+DV
Sbjct: 38  GRLSDLTHNLANWGRKNSLWPFNFGTSCCYVEYATTLTGVHDLSRFGAEVIRASPRQADV 97

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
           MIVAGT   KMA  + R+Y+QM EP++VISMG+CAN GG Y   YSVV+G D+I+PVD+Y
Sbjct: 98  MIVAGTCFVKMAPVILRLYEQMLEPKWVISMGACANSGGMYDI-YSVVQGVDKILPVDVY 156

Query: 156 VPGCPPTAEALIYGILLLQKKIRR 179
           VPGCPP  EALI  I+LLQ+ I++
Sbjct: 157 VPGCPPRPEALIQAIMLLQESIQK 180


>gi|152988699|ref|YP_001347933.1| NADH dehydrogenase subunit B [Pseudomonas aeruginosa PA7]
 gi|238065193|sp|A6V4E8|NUOB_PSEA7 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|150963857|gb|ABR85882.1| NADH dehydrogenase I chain B [Pseudomonas aeruginosa PA7]
          Length = 225

 Score =  150 bits (378), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 74/142 (52%), Positives = 97/142 (68%), Gaps = 2/142 (1%)

Query: 37  GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95
           G L   ++  V W R  SL    FGL+CC VEM  A    +D+ RFG    RASPRQ+D 
Sbjct: 41  GKLEDVLNSTVNWGRKNSLWPYNFGLSCCYVEMTTAFTAPHDIARFGAEVIRASPRQADF 100

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
           M++AGT   KMA  ++R+Y+QM EP++VISMGSCAN GG Y   YSVV+G D+ +PVD+Y
Sbjct: 101 MVIAGTCFIKMAPVIQRLYEQMLEPKWVISMGSCANSGGMYDI-YSVVQGVDKFLPVDVY 159

Query: 156 VPGCPPTAEALIYGILLLQKKI 177
           +PGCPP  EA + G++LLQ+ I
Sbjct: 160 IPGCPPRPEAFLQGLMLLQESI 181


>gi|297570897|ref|YP_003696671.1| NADH-quinone oxidoreductase subunit beta [Arcanobacterium
           haemolyticum DSM 20595]
 gi|296931244|gb|ADH92052.1| NADH-quinone oxidoreductase, B subunit [Arcanobacterium
           haemolyticum DSM 20595]
          Length = 185

 Score =  150 bits (378), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 71/150 (47%), Positives = 102/150 (68%), Gaps = 2/150 (1%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RAS 89
            E    G  +T+V+ L  WA+  S   +T GLACCA+EMM     R+D  R G    RAS
Sbjct: 4   EEKVPAGIGLTTVEALAGWAQQRSPWPVTMGLACCAIEMMSFGATRFDASRIGMEVFRAS 63

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PR +D+MIV+G +++KMA  +R +YDQMP+P++VISMG+CA+ GG ++ +Y++V+G D I
Sbjct: 64  PRHADIMIVSGRVSHKMAPVVRNIYDQMPDPKWVISMGACASSGGVFN-NYAIVQGIDHI 122

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           VPVDIY+PGCPP  E LI  +  L+  + +
Sbjct: 123 VPVDIYLPGCPPRPEMLINAVFELRNNVMK 152


>gi|37521948|ref|NP_925325.1| NADH dehydrogenase subunit B [Gloeobacter violaceus PCC 7421]
 gi|81709608|sp|Q7NI05|NDHK2_GLOVI RecName: Full=NAD(P)H-quinone oxidoreductase subunit K 2; AltName:
           Full=NAD(P)H dehydrogenase I subunit K 2; AltName:
           Full=NDH-1 subunit K 2; Short=NDH-K 2
 gi|35212947|dbj|BAC90320.1| NADH dehydrogenase subunit K [Gloeobacter violaceus PCC 7421]
          Length = 249

 Score =  150 bits (378), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 69/150 (46%), Positives = 104/150 (69%), Gaps = 2/150 (1%)

Query: 29  ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88
           ++SE+++   ++T+++ L  WAR  S+  + +G ACC +E       R+D +RFG  PRA
Sbjct: 20  VTSELSN-NVVLTTLNDLYNWARLSSVWPLMYGTACCFIEFAGLIGSRFDFDRFGLVPRA 78

Query: 89  SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCD 147
           SPRQ+D++I AGT+T K A AL  +Y QMPEP+YVI+MG+C   GG +   S + VRG D
Sbjct: 79  SPRQADLIITAGTITMKFAPALVTLYQQMPEPKYVIAMGACTITGGMFSTDSPTTVRGVD 138

Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
           +++PVD+Y+PGCPP  EA+   I+ L+KK+
Sbjct: 139 KLIPVDVYIPGCPPRPEAIFDAIIKLRKKM 168


>gi|298530619|ref|ZP_07018021.1| NADH-quinone oxidoreductase, B subunit [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298509993|gb|EFI33897.1| NADH-quinone oxidoreductase, B subunit [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 182

 Score =  150 bits (378), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 80/168 (47%), Positives = 105/168 (62%), Gaps = 8/168 (4%)

Query: 13  GQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQA 72
            Q + +L    AD S     I H       V +++   R  SL  MTFGLACCA+EMM  
Sbjct: 2   AQENQTLTHAYADTSYDEPIIDH-----APVQKILNICRAMSLWPMTFGLACCAIEMMGF 56

Query: 73  SMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCAN 131
            M R+D  RFG    R SPRQSD+MIVAGT+  K++  +  +Y+QMP P++VI+MG+CA 
Sbjct: 57  GMARFDSARFGAEVFRPSPRQSDLMIVAGTVNKKLSPLVTMLYEQMPSPKWVIAMGNCAI 116

Query: 132 GGGYYHY--SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
            GG + Y   Y +V G DRI+PVD+YVPGCPP  E L+ G+  +QKKI
Sbjct: 117 SGGPFVYKNQYGIVEGVDRIIPVDVYVPGCPPRPEGLLEGLFQVQKKI 164


>gi|157144782|ref|YP_001452101.1| NADH dehydrogenase subunit B [Citrobacter koseri ATCC BAA-895]
 gi|238055287|sp|A8ADV2|NUOB_CITK8 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|157081987|gb|ABV11665.1| hypothetical protein CKO_00509 [Citrobacter koseri ATCC BAA-895]
          Length = 224

 Score =  150 bits (378), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 76/163 (46%), Positives = 107/163 (65%), Gaps = 5/163 (3%)

Query: 19  LEKVDADFSRISSEIT---HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMP 75
           L+K +     +  EI    + G L  ++  +V W R  S+    FGL+CC VEM+ +   
Sbjct: 19  LQKQEIVTDPLEQEINKSVYMGKLEHALHDMVNWGRKNSIWPYNFGLSCCYVEMVTSFTA 78

Query: 76  RYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGG 134
            +D+ RFG    RASPRQ+D+M+VAGT   KMA  ++R+YDQM EP++VISMG+CAN GG
Sbjct: 79  VHDVARFGAEVLRASPRQADLMVVAGTCFTKMAPVIQRLYDQMLEPKWVISMGACANSGG 138

Query: 135 YYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
            Y   YSVV+G D+ +PVD+Y+PGCPP  EA +  ++LLQ+ I
Sbjct: 139 MYDI-YSVVQGVDKFIPVDVYIPGCPPRPEAYMQALMLLQESI 180


>gi|16761252|ref|NP_456869.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|16765654|ref|NP_461269.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|29141052|ref|NP_804394.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|56412776|ref|YP_149851.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|62180897|ref|YP_217314.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|161502528|ref|YP_001569640.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. arizonae
           serovar 62:z4,z23:-- str. RSK2980]
 gi|161612945|ref|YP_001586910.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
           serovar Paratyphi B str. SPB7]
 gi|167549674|ref|ZP_02343433.1| NADH-quinone oxidoreductase, B subunit [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|167994675|ref|ZP_02575766.1| NADH-quinone oxidoreductase, B subunit [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168229696|ref|ZP_02654754.1| NADH-quinone oxidoreductase, B subunit [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|168237344|ref|ZP_02662402.1| NADH-quinone oxidoreductase, B subunit [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|168242445|ref|ZP_02667377.1| NADH-quinone oxidoreductase, B subunit [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|168261657|ref|ZP_02683630.1| NADH-quinone oxidoreductase, B subunit [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|168465970|ref|ZP_02699840.1| NADH-quinone oxidoreductase, B subunit [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|168817943|ref|ZP_02829943.1| NADH-quinone oxidoreductase, B subunit [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|194443155|ref|YP_002041587.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194449154|ref|YP_002046380.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|194472303|ref|ZP_03078287.1| NADH-quinone oxidoreductase, B subunit [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194736744|ref|YP_002115396.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|197249243|ref|YP_002147285.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|197261696|ref|ZP_03161770.1| NADH-quinone oxidoreductase, B subunit [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197361710|ref|YP_002141346.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|198241862|ref|YP_002216397.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|200386648|ref|ZP_03213260.1| NADH-quinone oxidoreductase, B subunit [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|204928974|ref|ZP_03220117.1| NADH-quinone oxidoreductase, B subunit [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|205353442|ref|YP_002227243.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|207857745|ref|YP_002244396.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|213052942|ref|ZP_03345820.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
           serovar Typhi str. E00-7866]
 gi|213420337|ref|ZP_03353403.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
           serovar Typhi str. E01-6750]
 gi|213427012|ref|ZP_03359762.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
           serovar Typhi str. E02-1180]
 gi|213581020|ref|ZP_03362846.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-0664]
 gi|213610191|ref|ZP_03370017.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-2068]
 gi|213647303|ref|ZP_03377356.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
           serovar Typhi str. J185]
 gi|224583187|ref|YP_002636985.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|238912394|ref|ZP_04656231.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
           serovar Tennessee str. CDC07-0191]
 gi|289827447|ref|ZP_06546059.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-3139]
 gi|75482044|sp|Q57M29|NUOB_SALCH RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|81416296|sp|Q7CQ50|NUOB_SALTY RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|81599848|sp|Q5PN54|NUOB_SALPA RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|81628072|sp|Q8XGN7|NUOB_SALTI RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|238065204|sp|B5EZK8|NUOB_SALA4 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|238065205|sp|A9MJ98|NUOB_SALAR RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|238065206|sp|B5FPG8|NUOB_SALDC RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|238065207|sp|B5R308|NUOB_SALEP RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|238065208|sp|B5RCF2|NUOB_SALG2 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|238065209|sp|B4TBJ3|NUOB_SALHS RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|238065210|sp|B4SYZ8|NUOB_SALNS RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|238065211|sp|A9N581|NUOB_SALPB RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|238065212|sp|B5BCL9|NUOB_SALPK RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|238065213|sp|B4TPK9|NUOB_SALSV RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|254767798|sp|C0Q040|NUOB_SALPC RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|25299003|pir||AE0797 NADH2 dehydrogenase (ubiquinone) (EC 1.6.5.3) - Salmonella enterica
           subsp. enterica serovar Typhi (strain CT18)
 gi|16420868|gb|AAL21228.1| NADH dehydrogenase I chain B [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|16503551|emb|CAD07559.1| NADH dehydrogenase I chain B [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29136678|gb|AAO68243.1| NADH dehydrogenase I chain B [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|56127033|gb|AAV76539.1| NADH dehydrogenase I chain B [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|62128530|gb|AAX66233.1| NADH dehydrogenase I chain B [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|160863875|gb|ABX20498.1| hypothetical protein SARI_00572 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
 gi|161362309|gb|ABX66077.1| hypothetical protein SPAB_00651 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194401818|gb|ACF62040.1| NADH-quinone oxidoreductase, B subunit [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194407458|gb|ACF67677.1| NADH-quinone oxidoreductase, B subunit [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194458667|gb|EDX47506.1| NADH-quinone oxidoreductase, B subunit [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194712246|gb|ACF91467.1| NADH-quinone oxidoreductase, B subunit [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|195631416|gb|EDX49976.1| NADH-quinone oxidoreductase, B subunit [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|197093186|emb|CAR58630.1| NADH dehydrogenase I chain B [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|197212946|gb|ACH50343.1| NADH-quinone oxidoreductase, B subunit [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197239951|gb|EDY22571.1| NADH-quinone oxidoreductase, B subunit [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197289718|gb|EDY29081.1| NADH-quinone oxidoreductase, B subunit [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|197936378|gb|ACH73711.1| NADH-quinone oxidoreductase, B subunit [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|199603746|gb|EDZ02291.1| NADH-quinone oxidoreductase, B subunit [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|204321518|gb|EDZ06717.1| NADH-quinone oxidoreductase, B subunit [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|205273223|emb|CAR38186.1| NADH dehydrogenase I chain B [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|205325363|gb|EDZ13202.1| NADH-quinone oxidoreductase, B subunit [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205327503|gb|EDZ14267.1| NADH-quinone oxidoreductase, B subunit [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205335598|gb|EDZ22362.1| NADH-quinone oxidoreductase, B subunit [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|205338322|gb|EDZ25086.1| NADH-quinone oxidoreductase, B subunit [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|205345026|gb|EDZ31790.1| NADH-quinone oxidoreductase, B subunit [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|205349478|gb|EDZ36109.1| NADH-quinone oxidoreductase, B subunit [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|206709548|emb|CAR33893.1| NADH dehydrogenase I chain B [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|224467714|gb|ACN45544.1| NADH dehydrogenase beta subunit [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|261247533|emb|CBG25360.1| NADH dehydrogenase I chain B [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|267994422|gb|ACY89307.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 14028S]
 gi|301158885|emb|CBW18398.1| NADH dehydrogenase I chain B [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|312913318|dbj|BAJ37292.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
           serovar Typhimurium str. T000240]
 gi|320086761|emb|CBY96533.1| NADH dehydrogenase I chain B [Salmonella enterica subsp. enterica
           serovar Weltevreden str. 2007-60-3289-1]
 gi|321222972|gb|EFX48043.1| NADH-ubiquinone oxidoreductase chain B [Salmonella enterica subsp.
           enterica serovar Typhimurium str. TN061786]
 gi|322617073|gb|EFY13979.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315996572]
 gi|322617621|gb|EFY14520.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-1]
 gi|322624749|gb|EFY21578.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-3]
 gi|322630298|gb|EFY27068.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-4]
 gi|322634479|gb|EFY31212.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-1]
 gi|322639189|gb|EFY35881.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-2]
 gi|322640052|gb|EFY36719.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 531954]
 gi|322645727|gb|EFY42251.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. NC_MB110209-0054]
 gi|322651503|gb|EFY47878.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. OH_2009072675]
 gi|322656062|gb|EFY52361.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. CASC_09SCPH15965]
 gi|322659415|gb|EFY55662.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 19N]
 gi|322665875|gb|EFY62058.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 81038-01]
 gi|322669885|gb|EFY66026.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. MD_MDA09249507]
 gi|322673871|gb|EFY69968.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 414877]
 gi|322678629|gb|EFY74685.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 366867]
 gi|322683575|gb|EFY79589.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 413180]
 gi|322687651|gb|EFY83621.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 446600]
 gi|322715376|gb|EFZ06947.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. A50]
 gi|323130658|gb|ADX18088.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 4/74]
 gi|323193515|gb|EFZ78720.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609458-1]
 gi|323198420|gb|EFZ83522.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556150-1]
 gi|323201934|gb|EFZ86996.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609460]
 gi|323208528|gb|EFZ93467.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 507440-20]
 gi|323209763|gb|EFZ94687.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556152]
 gi|323218299|gb|EGA03009.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB101509-0077]
 gi|323222944|gb|EGA07293.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB102109-0047]
 gi|323227379|gb|EGA11544.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB110209-0055]
 gi|323232294|gb|EGA16397.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB111609-0052]
 gi|323235672|gb|EGA19756.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009083312]
 gi|323241167|gb|EGA25203.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009085258]
 gi|323244909|gb|EGA28911.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315731156]
 gi|323250028|gb|EGA33922.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2009159199]
 gi|323254449|gb|EGA38264.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008282]
 gi|323254951|gb|EGA38742.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008283]
 gi|323260331|gb|EGA43950.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008284]
 gi|323268093|gb|EGA51570.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008285]
 gi|323270814|gb|EGA54252.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008287]
 gi|326624148|gb|EGE30493.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
           serovar Dublin str. 3246]
 gi|326628534|gb|EGE34877.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 9]
 gi|332989260|gb|AEF08243.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
           serovar Typhimurium str. UK-1]
          Length = 220

 Score =  150 bits (378), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 74/160 (46%), Positives = 106/160 (66%), Gaps = 3/160 (1%)

Query: 19  LEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78
           L+K +     +  E+ +K   +  +  +V W R  S+    FGL+CC VEM+ +    +D
Sbjct: 19  LQKQEIVTDPLEQEV-NKNVFMGKLHDMVNWGRKNSIWPYNFGLSCCYVEMVTSFTAVHD 77

Query: 79  LERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137
           + RFG    RASPRQ+D+M+VAGT   KMA  ++R+YDQM EP++VISMG+CAN GG Y 
Sbjct: 78  VARFGAEVLRASPRQADLMVVAGTCFTKMAPVIQRLYDQMLEPKWVISMGACANSGGMYD 137

Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
             YSVV+G D+ +PVD+Y+PGCPP  EA +  ++LLQ+ I
Sbjct: 138 I-YSVVQGVDKFIPVDVYIPGCPPRPEAYMQALMLLQESI 176


>gi|26990814|ref|NP_746239.1| NADH dehydrogenase subunit B [Pseudomonas putida KT2440]
 gi|148546983|ref|YP_001267085.1| NADH dehydrogenase subunit B [Pseudomonas putida F1]
 gi|81586001|sp|Q88FH6|NUOB_PSEPK RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|238065196|sp|A5W191|NUOB_PSEP1 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|24985820|gb|AAN69703.1|AE016606_6 NADH dehydrogenase I, B subunit [Pseudomonas putida KT2440]
 gi|148511041|gb|ABQ77901.1| NADH-quinone oxidoreductase, B subunit [Pseudomonas putida F1]
 gi|313498030|gb|ADR59396.1| NuoB [Pseudomonas putida BIRD-1]
          Length = 225

 Score =  150 bits (378), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 75/156 (48%), Positives = 102/156 (65%), Gaps = 6/156 (3%)

Query: 27  SRISSEITHKGFLVTSVDQL----VTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82
            ++  +  HK   +  ++ +    V W R  SL    FGL+CC VEM  A    +D+ RF
Sbjct: 27  DQLLEDQVHKNIFMGKLEDVLRGAVNWGRKNSLWPYNFGLSCCYVEMTTAFTAPHDIARF 86

Query: 83  GFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYS 141
           G    RASPRQ+D M++AGT   KMA  ++R+Y+QM EP++VISMGSCAN GG Y   YS
Sbjct: 87  GAEVIRASPRQADFMVIAGTCFVKMAPIIQRLYEQMLEPKWVISMGSCANSGGMYDI-YS 145

Query: 142 VVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
           VV+G D+ +PVD+YVPGCPP  EA + G++LLQ+ I
Sbjct: 146 VVQGVDKFLPVDVYVPGCPPRPEAFLQGLMLLQESI 181


>gi|325277477|ref|ZP_08143082.1| NADH dehydrogenase subunit B [Pseudomonas sp. TJI-51]
 gi|324097393|gb|EGB95634.1| NADH dehydrogenase subunit B [Pseudomonas sp. TJI-51]
          Length = 225

 Score =  150 bits (378), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 75/156 (48%), Positives = 102/156 (65%), Gaps = 6/156 (3%)

Query: 27  SRISSEITHKGFLVTSVDQL----VTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82
            ++  +  HK   +  ++ +    V W R  SL    FGL+CC VEM  A    +D+ RF
Sbjct: 27  DQLLEDQVHKNIFMGKLEDVLRGAVNWGRKNSLWPYNFGLSCCYVEMTTAFTAPHDIARF 86

Query: 83  GFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYS 141
           G    RASPRQ+D M++AGT   KMA  ++R+Y+QM EP++VISMGSCAN GG Y   YS
Sbjct: 87  GAEVIRASPRQADFMVIAGTCFVKMAPIIQRLYEQMLEPKWVISMGSCANSGGMYDI-YS 145

Query: 142 VVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
           VV+G D+ +PVD+YVPGCPP  EA + G++LLQ+ I
Sbjct: 146 VVQGVDKFLPVDVYVPGCPPRPEAFLQGLMLLQESI 181


>gi|255961387|ref|YP_003097580.1| NADH dehydrogenase 27 kDa subunit [Dendrocalamus latiflorus]
 gi|255040264|gb|ACT99924.1| NADH dehydrogenase 27 kDa subunit [Dendrocalamus latiflorus]
          Length = 246

 Score =  150 bits (378), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 65/149 (43%), Positives = 102/149 (68%), Gaps = 1/149 (0%)

Query: 32  EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPR 91
           + +    + T+ + L  W++  SL  + +G +CC +E       R+D +R+G+ P++SPR
Sbjct: 32  QTSSNSVISTTPNDLSNWSKLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGWVPKSSPR 91

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIV 150
           Q+++++ AGT T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++
Sbjct: 92  QANLILTAGTETMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLI 151

Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           PVD+Y+PGCPP  EA+I  +  L+KKI R
Sbjct: 152 PVDVYLPGCPPKPEAVIDALTKLRKKISR 180


>gi|152971215|ref|YP_001336324.1| NADH dehydrogenase subunit B [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|206576675|ref|YP_002237325.1| NADH-quinone oxidoreductase, B subunit [Klebsiella pneumoniae 342]
 gi|238895804|ref|YP_002920540.1| NADH dehydrogenase subunit B [Klebsiella pneumoniae NTUH-K2044]
 gi|262043327|ref|ZP_06016456.1| NADH dehydrogenase I subunit B [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|288934255|ref|YP_003438314.1| NADH-quinone oxidoreductase subunit beta [Klebsiella variicola
           At-22]
 gi|290508458|ref|ZP_06547829.1| NADH dehydrogenase I subunit B [Klebsiella sp. 1_1_55]
 gi|311278756|ref|YP_003940987.1| NADH-quinone oxidoreductase, B subunit [Enterobacter cloacae SCF1]
 gi|330003557|ref|ZP_08304672.1| NADH dehydrogenase I subunit B [Klebsiella sp. MS 92-3]
 gi|238065162|sp|B5XNV5|NUOB_KLEP3 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|238065163|sp|A6TBX3|NUOB_KLEP7 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|150956064|gb|ABR78094.1| NADH dehydrogenase beta subunit [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|206565733|gb|ACI07509.1| NADH-quinone oxidoreductase, B subunit [Klebsiella pneumoniae 342]
 gi|238548122|dbj|BAH64473.1| NADH dehydrogenase beta subunit [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
 gi|259039351|gb|EEW40493.1| NADH dehydrogenase I subunit B [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|288888984|gb|ADC57302.1| NADH-quinone oxidoreductase, B subunit [Klebsiella variicola At-22]
 gi|289777852|gb|EFD85849.1| NADH dehydrogenase I subunit B [Klebsiella sp. 1_1_55]
 gi|308747951|gb|ADO47703.1| NADH-quinone oxidoreductase, B subunit [Enterobacter cloacae SCF1]
 gi|328536897|gb|EGF63196.1| NADH dehydrogenase I subunit B [Klebsiella sp. MS 92-3]
          Length = 224

 Score =  150 bits (378), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 72/144 (50%), Positives = 100/144 (69%), Gaps = 2/144 (1%)

Query: 35  HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQS 93
           + G L  ++  +V W R  S+    FGL+CC VEM+ +    +D+ RFG    RASPRQ+
Sbjct: 38  YMGKLEHALHDMVNWGRKNSIWPYNFGLSCCYVEMVTSFTAVHDVARFGAEVLRASPRQA 97

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD 153
           D+M+VAGT   KMA  ++R+YDQM EP++VISMG+CAN GG Y   YSVV+G D+ +PVD
Sbjct: 98  DLMVVAGTCFTKMAPVIQRLYDQMLEPKWVISMGACANSGGMYDI-YSVVQGVDKFIPVD 156

Query: 154 IYVPGCPPTAEALIYGILLLQKKI 177
           +Y+PGCPP  EA +  ++LLQ+ I
Sbjct: 157 VYIPGCPPRPEAYMQALMLLQESI 180


>gi|308187603|ref|YP_003931734.1| NADH dehydrogenase I chain B [Pantoea vagans C9-1]
 gi|308058113|gb|ADO10285.1| NADH dehydrogenase I chain B [Pantoea vagans C9-1]
          Length = 225

 Score =  150 bits (378), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 73/142 (51%), Positives = 97/142 (68%), Gaps = 2/142 (1%)

Query: 37  GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95
           G L  ++  +V W R  SL    FGL+CC VEM  +    +D+ RFG    RASPRQ+D 
Sbjct: 41  GKLENALHDMVNWGRKNSLWPYNFGLSCCYVEMTTSFTAVHDVARFGAEVMRASPRQADF 100

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
           M++AGT   KMA  ++R+YDQM EP++VISMG+CAN GG Y   YSVV+G D+ +PVD+Y
Sbjct: 101 MVIAGTPFTKMAPVIQRLYDQMLEPKWVISMGACANSGGMYDI-YSVVQGVDKFLPVDVY 159

Query: 156 VPGCPPTAEALIYGILLLQKKI 177
           +PGCPP  EA +  +LLLQ+ I
Sbjct: 160 IPGCPPRPEAYMQALLLLQESI 181


>gi|226227808|ref|YP_002761914.1| NADH-quinone oxidoreductase chain B [Gemmatimonas aurantiaca T-27]
 gi|226090999|dbj|BAH39444.1| NADH-quinone oxidoreductase chain B [Gemmatimonas aurantiaca T-27]
          Length = 171

 Score =  150 bits (378), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 75/141 (53%), Positives = 99/141 (70%), Gaps = 2/141 (1%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQSDVM 96
           +L T  D+LV WAR  SL    F  ACCA+E M  S   YD +RFG A PR SPRQ+D++
Sbjct: 20  YLTTRKDELVGWARKFSLFPYPFVTACCAMEFMAVSASAYDTDRFGAALPRFSPRQADLL 79

Query: 97  IVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV 156
           +V GT+T K A  L +VY+QM EP++V++ G CA+ GG+Y  +Y+ + G DRI+PVDIYV
Sbjct: 80  MVVGTVTQKQAPILLKVYEQMCEPKWVMAFGVCASTGGFYQ-NYASLPGIDRIIPVDIYV 138

Query: 157 PGCPPTAEALIYGILLLQKKI 177
           PGCPP  E +I GI+ LQ+KI
Sbjct: 139 PGCPPRPEMVIDGIMRLQEKI 159


>gi|197285619|ref|YP_002151491.1| NADH dehydrogenase subunit B [Proteus mirabilis HI4320]
 gi|226327884|ref|ZP_03803402.1| hypothetical protein PROPEN_01765 [Proteus penneri ATCC 35198]
 gi|227356122|ref|ZP_03840512.1| NADH-quinone oxidoreductase chain B [Proteus mirabilis ATCC 29906]
 gi|238065191|sp|B4EZC9|NUOB_PROMH RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|194683106|emb|CAR43667.1| NADH-quinone oxidoreductase chain B [Proteus mirabilis HI4320]
 gi|225203588|gb|EEG85942.1| hypothetical protein PROPEN_01765 [Proteus penneri ATCC 35198]
 gi|227163767|gb|EEI48679.1| NADH-quinone oxidoreductase chain B [Proteus mirabilis ATCC 29906]
          Length = 224

 Score =  150 bits (378), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 73/142 (51%), Positives = 98/142 (69%), Gaps = 2/142 (1%)

Query: 37  GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95
           G L  ++  +V W R  SL    FGL+CC VEM+ +    +D+ RFG    RASPRQ+D 
Sbjct: 40  GKLEHALHDVVNWGRKNSLWPYNFGLSCCYVEMVTSFTAVHDVARFGSEVLRASPRQADF 99

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
           M+VAGT   KMA  ++R+YDQM EP++VISMG+CAN GG Y   YSVV+G D+ +PVD+Y
Sbjct: 100 MVVAGTCFTKMAPVIQRLYDQMLEPKWVISMGACANSGGMYDI-YSVVQGVDKFIPVDVY 158

Query: 156 VPGCPPTAEALIYGILLLQKKI 177
           +PGCPP  EA +  ++LLQ+ I
Sbjct: 159 IPGCPPRPEAYMQALMLLQESI 180


>gi|242239967|ref|YP_002988148.1| NADH dehydrogenase subunit B [Dickeya dadantii Ech703]
 gi|242132024|gb|ACS86326.1| NADH-quinone oxidoreductase, B subunit [Dickeya dadantii Ech703]
          Length = 224

 Score =  150 bits (378), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 74/143 (51%), Positives = 99/143 (69%), Gaps = 2/143 (1%)

Query: 37  GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95
           G L  ++  +V W R+ SL    FGL+CC VEM  +    +D+ RFG    RASPRQ+D 
Sbjct: 40  GNLEHALHNMVNWGRSNSLWPYNFGLSCCYVEMATSFTAVHDVARFGSEVIRASPRQADF 99

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
           M+VAGT   KMA  ++R+YDQM EP++VISMG+CAN GG Y   YSVV+G D+ +PVD+Y
Sbjct: 100 MVVAGTPFLKMAPVIQRLYDQMLEPKWVISMGACANSGGMYDI-YSVVQGVDKFLPVDVY 158

Query: 156 VPGCPPTAEALIYGILLLQKKIR 178
           +PGCPP  EA +  +LLL++ IR
Sbjct: 159 IPGCPPRPEAYMQALLLLKESIR 181


>gi|319760615|ref|YP_004124553.1| NADH-quinone oxidoreductase, subunit B [Candidatus Blochmannia
           vafer str. BVAF]
 gi|318039329|gb|ADV33879.1| NADH-quinone oxidoreductase, subunit B [Candidatus Blochmannia
           vafer str. BVAF]
          Length = 222

 Score =  149 bits (377), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 75/142 (52%), Positives = 96/142 (67%), Gaps = 2/142 (1%)

Query: 37  GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95
           G L   + ++V W R  SL    FGL+CC VEM  A    +D+ RFG    R+SPRQSD 
Sbjct: 41  GKLTAFLHKIVNWGRGNSLWPYNFGLSCCYVEMTTAFTAVHDVARFGSEVLRSSPRQSDF 100

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
           M++AGT   KM   ++R+YDQM EP++VISMG+CAN GG Y   YSVV+G D+ +PVDIY
Sbjct: 101 MVIAGTPFIKMVPVIQRLYDQMLEPKWVISMGACANSGGMYDI-YSVVQGVDKFLPVDIY 159

Query: 156 VPGCPPTAEALIYGILLLQKKI 177
           +PGCPP  EA I  +LLL+K I
Sbjct: 160 IPGCPPRPEAYIQALLLLKKSI 181


>gi|326565205|gb|EGE15391.1| NADH dehydrogenase subunit B [Moraxella catarrhalis 103P14B1]
 gi|326574002|gb|EGE23951.1| NADH dehydrogenase subunit B [Moraxella catarrhalis CO72]
 gi|326577029|gb|EGE26924.1| NADH dehydrogenase subunit B [Moraxella catarrhalis 101P30B1]
          Length = 222

 Score =  149 bits (377), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 78/144 (54%), Positives = 95/144 (65%), Gaps = 2/144 (1%)

Query: 37  GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95
           G L      L  W R  SL    FG +CC VE        +DL RFG    RASPRQ+DV
Sbjct: 38  GRLSDLTHNLANWGRKNSLWPFNFGTSCCYVEYATTLTGVHDLSRFGAEVIRASPRQADV 97

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
           MIVAGT   KMA  + R+Y+QM EP++VISMG+CAN GG Y   YSVV+G D+I+PVD+Y
Sbjct: 98  MIVAGTCFVKMAPVILRLYEQMLEPKWVISMGACANSGGMYDI-YSVVQGVDKILPVDVY 156

Query: 156 VPGCPPTAEALIYGILLLQKKIRR 179
           VPGCPP  EALI  I+LLQ+ I++
Sbjct: 157 VPGCPPRPEALIQAIMLLQESIQK 180


>gi|52550302|gb|AAU84151.1| F420H2 dehydrogenase subunit B [uncultured archaeon GZfos37B2]
          Length = 175

 Score =  149 bits (377), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 65/144 (45%), Positives = 94/144 (65%)

Query: 35  HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSD 94
           H+    +    ++ W R  SL +MT  + CC VEM+ A    YD +RFG  PR SPR +D
Sbjct: 20  HEFLKKSPAQDVINWGRKNSLWFMTQPMGCCGVEMIAAGCSHYDTDRFGIIPRCSPRHAD 79

Query: 95  VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154
           VM+++G +  K   AL+R+Y+QMP P++VI MG+C+  GG ++ SY+ ++  D I PVD+
Sbjct: 80  VMVISGYIVRKYFPALKRLYEQMPSPKWVICMGNCSISGGPFYRSYNTLQNIDEIFPVDV 139

Query: 155 YVPGCPPTAEALIYGILLLQKKIR 178
           Y+ GCPP  EALI G + LQKKI+
Sbjct: 140 YITGCPPRPEALIQGFIELQKKIK 163


>gi|296103968|ref|YP_003614114.1| NADH dehydrogenase subunit B [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|295058427|gb|ADF63165.1| NADH dehydrogenase subunit B [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|295098074|emb|CBK87164.1| NADH dehydrogenase subunit B [Enterobacter cloacae subsp. cloacae
           NCTC 9394]
          Length = 224

 Score =  149 bits (377), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 72/144 (50%), Positives = 100/144 (69%), Gaps = 2/144 (1%)

Query: 35  HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQS 93
           + G L  ++  +V W R  S+    FGL+CC VEM+ +    +D+ RFG    RASPRQ+
Sbjct: 38  YMGKLEHAMHDMVNWGRKNSIWPYNFGLSCCYVEMVTSFTAVHDVARFGAEVLRASPRQA 97

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD 153
           D+M+VAGT   KMA  ++R+YDQM EP++VISMG+CAN GG Y   YSVV+G D+ +PVD
Sbjct: 98  DLMVVAGTCFTKMAPVIQRLYDQMLEPKWVISMGACANSGGMYDI-YSVVQGVDKFIPVD 156

Query: 154 IYVPGCPPTAEALIYGILLLQKKI 177
           +Y+PGCPP  EA +  ++LLQ+ I
Sbjct: 157 VYIPGCPPRPEAYMQALMLLQESI 180


>gi|304398215|ref|ZP_07380089.1| NADH-quinone oxidoreductase, B subunit [Pantoea sp. aB]
 gi|304354081|gb|EFM18454.1| NADH-quinone oxidoreductase, B subunit [Pantoea sp. aB]
          Length = 225

 Score =  149 bits (377), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 73/142 (51%), Positives = 97/142 (68%), Gaps = 2/142 (1%)

Query: 37  GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95
           G L  ++  +V W R  SL    FGL+CC VEM  +    +D+ RFG    RASPRQ+D 
Sbjct: 41  GKLENALHDMVNWGRKNSLWPYNFGLSCCYVEMTTSFTAVHDVARFGAEVMRASPRQADF 100

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
           M++AGT   KMA  ++R+YDQM EP++VISMG+CAN GG Y   YSVV+G D+ +PVD+Y
Sbjct: 101 MVIAGTPFTKMAPVIQRLYDQMLEPKWVISMGACANSGGMYDI-YSVVQGVDKFLPVDVY 159

Query: 156 VPGCPPTAEALIYGILLLQKKI 177
           +PGCPP  EA +  +LLLQ+ I
Sbjct: 160 IPGCPPRPEAYMQALLLLQESI 181


>gi|70731257|ref|YP_260998.1| NADH dehydrogenase subunit B [Pseudomonas fluorescens Pf-5]
 gi|123654431|sp|Q4K9T5|NUOB_PSEF5 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|68345556|gb|AAY93162.1| NADH-quinone oxidoreductase, B subunit [Pseudomonas fluorescens
           Pf-5]
          Length = 224

 Score =  149 bits (377), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 75/148 (50%), Positives = 99/148 (66%), Gaps = 6/148 (4%)

Query: 35  HKGFLVTSVDQL----VTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RAS 89
           HK   +  ++ +    V W R  SL    FGL+CC VEM  A    +D+ RFG    RAS
Sbjct: 34  HKNIFMGKLEDVLSGAVNWGRKNSLWPYNFGLSCCYVEMTTAFTAPHDIARFGAEVIRAS 93

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQ+D M++AGT   KMA  ++R+Y+QM EP++VISMGSCAN GG Y   YSVV+G D+ 
Sbjct: 94  PRQADFMVIAGTCFIKMAPIIQRLYEQMLEPKWVISMGSCANSGGMYDI-YSVVQGVDKF 152

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKI 177
           +PVD+YVPGCPP  EA + G++LLQ+ I
Sbjct: 153 LPVDVYVPGCPPRPEAFLQGLMLLQESI 180


>gi|77459826|ref|YP_349333.1| NADH dehydrogenase subunit B [Pseudomonas fluorescens Pf0-1]
 gi|123604056|sp|Q3KA62|NUOB_PSEPF RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|77383829|gb|ABA75342.1| NADH dehydrogenase subunit B [Pseudomonas fluorescens Pf0-1]
          Length = 224

 Score =  149 bits (377), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 75/148 (50%), Positives = 99/148 (66%), Gaps = 6/148 (4%)

Query: 35  HKGFLVTSVDQL----VTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RAS 89
           HK   +  ++ +    V W R  SL    FGL+CC VEM  A    +D+ RFG    RAS
Sbjct: 34  HKNIFMGKLEDVLSGAVNWGRKNSLWPYNFGLSCCYVEMTTAFTAPHDIARFGAEVIRAS 93

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQ+D M++AGT   KMA  ++R+Y+QM EP++VISMGSCAN GG Y   YSVV+G D+ 
Sbjct: 94  PRQADFMVIAGTCFIKMAPIIQRLYEQMLEPKWVISMGSCANSGGMYDI-YSVVQGVDKF 152

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKI 177
           +PVD+YVPGCPP  EA + G++LLQ+ I
Sbjct: 153 LPVDVYVPGCPPRPEAFLQGLMLLQESI 180


>gi|301353373|ref|YP_003795584.1| NADH-plastoquinone oxidoreductase subunit K [Pteridium aquilinum
           subsp. aquilinum]
 gi|301016291|gb|ADK47578.1| NADH-plastoquinone oxidoreductase subunit K [Pteridium aquilinum
           subsp. aquilinum]
          Length = 252

 Score =  149 bits (377), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 66/142 (46%), Positives = 97/142 (68%), Gaps = 1/142 (0%)

Query: 39  LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIV 98
            + ++     W+R  SL  + +G +CC +E       R+D +R+G  PR+SPRQ+D+++ 
Sbjct: 42  FLANISDFSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLIVT 101

Query: 99  AGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPVDIYVP 157
           AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG     SYS VRG D+++PVDI++P
Sbjct: 102 AGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMSSTDSYSTVRGVDKLIPVDIHLP 161

Query: 158 GCPPTAEALIYGILLLQKKIRR 179
           GCPP  EA+I  +  L+KKI R
Sbjct: 162 GCPPKPEAIIDAVTKLRKKIAR 183


>gi|116515039|ref|YP_802668.1| NADH dehydrogenase subunit B [Buchnera aphidicola str. Cc (Cinara
           cedri)]
 gi|122285565|sp|Q057X4|NUOB_BUCCC RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|116256893|gb|ABJ90575.1| NADH dehydrogenase I chain B [Buchnera aphidicola str. Cc (Cinara
           cedri)]
          Length = 225

 Score =  149 bits (377), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 83/180 (46%), Positives = 107/180 (59%), Gaps = 4/180 (2%)

Query: 3   LTTVNQK--IISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTF 60
           LT VN K  I       SL+K      +        G +   +  ++ W R  SL    F
Sbjct: 5   LTRVNTKNSISKKYPLRSLKKTSDPIKKQIKNNIFFGTISKYMQYIMNWGRKNSLWPYNF 64

Query: 61  GLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119
           GL+CC VEM+ A    +D+ RFG    R SPRQ+D M++AGT   KMA  ++R+YD M E
Sbjct: 65  GLSCCYVEMVSAFTSIHDISRFGSEVLRTSPRQADFMVIAGTPFIKMAPVIQRLYDLMLE 124

Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           P++VISMGSCAN GG Y   YSVV+G D+ +PVDIY+PGCPP  EA I+ I LLQK I +
Sbjct: 125 PKWVISMGSCANSGGMYDI-YSVVQGVDKFLPVDIYIPGCPPRPEAYIHAITLLQKAISK 183


>gi|261340675|ref|ZP_05968533.1| NADH dehydrogenase I subunit B [Enterobacter cancerogenus ATCC
           35316]
 gi|288317089|gb|EFC56027.1| NADH dehydrogenase I subunit B [Enterobacter cancerogenus ATCC
           35316]
          Length = 224

 Score =  149 bits (377), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 72/144 (50%), Positives = 100/144 (69%), Gaps = 2/144 (1%)

Query: 35  HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQS 93
           + G L  ++  +V W R  S+    FGL+CC VEM+ +    +D+ RFG    RASPRQ+
Sbjct: 38  YMGKLEHAMHDMVNWGRKNSIWPYNFGLSCCYVEMVTSFTAVHDVARFGAEVLRASPRQA 97

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD 153
           D+M+VAGT   KMA  ++R+YDQM EP++VISMG+CAN GG Y   YSVV+G D+ +PVD
Sbjct: 98  DLMVVAGTCFTKMAPVIQRLYDQMLEPKWVISMGACANSGGMYDI-YSVVQGVDKFIPVD 156

Query: 154 IYVPGCPPTAEALIYGILLLQKKI 177
           +Y+PGCPP  EA +  ++LLQ+ I
Sbjct: 157 VYIPGCPPRPEAYMQALMLLQESI 180


>gi|28870530|ref|NP_793149.1| NADH dehydrogenase I subunit B [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|71737615|ref|YP_275280.1| NADH dehydrogenase subunit B [Pseudomonas syringae pv. phaseolicola
           1448A]
 gi|213970034|ref|ZP_03398166.1| NADH dehydrogenase subunit B [Pseudomonas syringae pv. tomato T1]
 gi|237800544|ref|ZP_04589005.1| NADH dehydrogenase subunit B [Pseudomonas syringae pv. oryzae str.
           1_6]
 gi|257485440|ref|ZP_05639481.1| NADH dehydrogenase subunit B [Pseudomonas syringae pv. tabaci ATCC
           11528]
 gi|289625427|ref|ZP_06458381.1| NADH dehydrogenase subunit B [Pseudomonas syringae pv. aesculi str.
           NCPPB3681]
 gi|289649290|ref|ZP_06480633.1| NADH dehydrogenase subunit B [Pseudomonas syringae pv. aesculi str.
           2250]
 gi|289679197|ref|ZP_06500087.1| NADH dehydrogenase subunit B [Pseudomonas syringae pv. syringae
           FF5]
 gi|298487549|ref|ZP_07005591.1| NADH-ubiquinone oxidoreductase chain B [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|301381389|ref|ZP_07229807.1| NADH dehydrogenase subunit B [Pseudomonas syringae pv. tomato
           Max13]
 gi|302062160|ref|ZP_07253701.1| NADH dehydrogenase subunit B [Pseudomonas syringae pv. tomato K40]
 gi|302130363|ref|ZP_07256353.1| NADH dehydrogenase subunit B [Pseudomonas syringae pv. tomato NCPPB
           1108]
 gi|302185024|ref|ZP_07261697.1| NADH dehydrogenase subunit B [Pseudomonas syringae pv. syringae
           642]
 gi|81730555|sp|Q87ZQ8|NUOB_PSESM RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|123635950|sp|Q48H53|NUOB_PSE14 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|28853778|gb|AAO56844.1| NADH dehydrogenase I, B subunit [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|71558168|gb|AAZ37379.1| NADH-quinone oxidoreductase, B subunit [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|213925138|gb|EEB58701.1| NADH dehydrogenase subunit B [Pseudomonas syringae pv. tomato T1]
 gi|298157933|gb|EFH99011.1| NADH-ubiquinone oxidoreductase chain B [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|320323789|gb|EFW79873.1| NADH dehydrogenase subunit B [Pseudomonas syringae pv. glycinea
           str. B076]
 gi|320327928|gb|EFW83933.1| NADH dehydrogenase subunit B [Pseudomonas syringae pv. glycinea
           str. race 4]
 gi|330866837|gb|EGH01546.1| NADH dehydrogenase subunit B [Pseudomonas syringae pv. aesculi str.
           0893_23]
 gi|330875772|gb|EGH09921.1| NADH dehydrogenase subunit B [Pseudomonas syringae pv. morsprunorum
           str. M302280PT]
 gi|330889659|gb|EGH22320.1| NADH dehydrogenase subunit B [Pseudomonas syringae pv. mori str.
           301020]
 gi|330900626|gb|EGH32045.1| NADH dehydrogenase subunit B [Pseudomonas syringae pv. japonica
           str. M301072PT]
 gi|330940383|gb|EGH43487.1| NADH dehydrogenase subunit B [Pseudomonas syringae pv. pisi str.
           1704B]
 gi|330954562|gb|EGH54822.1| NADH dehydrogenase subunit B [Pseudomonas syringae Cit 7]
 gi|330965590|gb|EGH65850.1| NADH dehydrogenase subunit B [Pseudomonas syringae pv. actinidiae
           str. M302091]
 gi|330981370|gb|EGH79473.1| NADH dehydrogenase subunit B [Pseudomonas syringae pv. aptata str.
           DSM 50252]
 gi|330987943|gb|EGH86046.1| NADH dehydrogenase subunit B [Pseudomonas syringae pv. lachrymans
           str. M301315]
 gi|331010726|gb|EGH90782.1| NADH dehydrogenase subunit B [Pseudomonas syringae pv. tabaci ATCC
           11528]
 gi|331017272|gb|EGH97328.1| NADH dehydrogenase subunit B [Pseudomonas syringae pv. lachrymans
           str. M302278PT]
 gi|331023404|gb|EGI03461.1| NADH dehydrogenase subunit B [Pseudomonas syringae pv. oryzae str.
           1_6]
          Length = 224

 Score =  149 bits (377), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 75/144 (52%), Positives = 98/144 (68%), Gaps = 2/144 (1%)

Query: 35  HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQS 93
           + G L   ++  V W R  SL    FGL+CC VEM  A    +D+ RFG    RASPRQ+
Sbjct: 38  YMGKLEDVLNGAVNWGRKNSLWPYNFGLSCCYVEMTTAFTAPHDIARFGAEVIRASPRQA 97

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD 153
           D M++AGT   KMA  ++R+Y+QM EP++VISMGSCAN GG Y   YSVV+G D+ +PVD
Sbjct: 98  DFMVIAGTCFIKMAPIIQRLYEQMLEPKWVISMGSCANSGGMYDI-YSVVQGVDKFLPVD 156

Query: 154 IYVPGCPPTAEALIYGILLLQKKI 177
           +YVPGCPP  EA + G++LLQ+ I
Sbjct: 157 VYVPGCPPRPEAFLQGLMLLQESI 180


>gi|237732318|ref|ZP_04562799.1| trifunctional NADH dehydrogenase I subunit B/C/D [Citrobacter sp.
           30_2]
 gi|283832283|ref|ZP_06352024.1| NADH dehydrogenase I subunit B [Citrobacter youngae ATCC 29220]
 gi|226907857|gb|EEH93775.1| trifunctional NADH dehydrogenase I subunit B/C/D [Citrobacter sp.
           30_2]
 gi|291071927|gb|EFE10036.1| NADH dehydrogenase I subunit B [Citrobacter youngae ATCC 29220]
          Length = 220

 Score =  149 bits (377), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 74/160 (46%), Positives = 105/160 (65%), Gaps = 3/160 (1%)

Query: 19  LEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78
           L+K +     +  E+ +K   +  +  +V W R  S+    FGL+CC VEM+ +    +D
Sbjct: 19  LQKQEIVTDPLEQEV-NKNVFMGKLHDMVNWGRKNSIWPYNFGLSCCYVEMVTSFTAVHD 77

Query: 79  LERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137
           + RFG    RASPRQ+D+M+VAGT   KMA  ++R+YDQM EP++VISMG+CAN GG Y 
Sbjct: 78  VARFGAEVLRASPRQADLMVVAGTCFTKMAPVIQRLYDQMLEPKWVISMGACANSGGMYD 137

Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
             YSVV+G D+ +PVD+Y+PGCPP  EA +  ++LLQ  I
Sbjct: 138 I-YSVVQGVDKFIPVDVYIPGCPPRPEAYMQALMLLQDSI 176


>gi|222632346|gb|EEE64478.1| hypothetical protein OsJ_19328 [Oryza sativa Japonica Group]
          Length = 976

 Score =  149 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 64/73 (87%), Positives = 69/73 (94%)

Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL 166
           AS+  +VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL
Sbjct: 894 ASSASQVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL 953

Query: 167 IYGILLLQKKIRR 179
           +YG+L LQKKI R
Sbjct: 954 LYGVLQLQKKINR 966


>gi|323148910|ref|YP_004222465.1| NADH-plastoquinone oxidoreductase subunit K [Smilax china]
 gi|308742601|gb|ADO33452.1| NADH-plastoquinone oxidoreductase subunit K [Smilax china]
          Length = 284

 Score =  149 bits (376), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 67/147 (45%), Positives = 101/147 (68%), Gaps = 1/147 (0%)

Query: 32  EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPR 91
           + T    + T+++ L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPR
Sbjct: 70  QTTPNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPR 129

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIV 150
           ++ +++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++
Sbjct: 130 KAALILPAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLI 189

Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKI 177
           PVD+Y+PGCPP  EA+I  I  L+KKI
Sbjct: 190 PVDVYLPGCPPKPEAVIDAITKLRKKI 216


>gi|291618188|ref|YP_003520930.1| NuoB [Pantoea ananatis LMG 20103]
 gi|291153218|gb|ADD77802.1| NuoB [Pantoea ananatis LMG 20103]
 gi|327394581|dbj|BAK12003.1| NADH-quinone oxidoreductase chain B NuoB [Pantoea ananatis AJ13355]
          Length = 225

 Score =  149 bits (376), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 73/142 (51%), Positives = 97/142 (68%), Gaps = 2/142 (1%)

Query: 37  GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95
           G L  ++  +V W R  SL    FGL+CC VEM  +    +D+ RFG    RASPRQ+D 
Sbjct: 41  GKLEHALHDMVNWGRKNSLWPYNFGLSCCYVEMTTSFTAVHDVARFGAEVMRASPRQADF 100

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
           M++AGT   KMA  ++R+YDQM EP++VISMG+CAN GG Y   YSVV+G D+ +PVD+Y
Sbjct: 101 MVIAGTPFTKMAPVIQRLYDQMLEPKWVISMGACANSGGMYDI-YSVVQGVDKFLPVDVY 159

Query: 156 VPGCPPTAEALIYGILLLQKKI 177
           +PGCPP  EA +  +LLLQ+ I
Sbjct: 160 IPGCPPRPEAYMQALLLLQESI 181


>gi|330503270|ref|YP_004380139.1| NADH dehydrogenase subunit B [Pseudomonas mendocina NK-01]
 gi|328917556|gb|AEB58387.1| NADH dehydrogenase subunit B [Pseudomonas mendocina NK-01]
          Length = 225

 Score =  149 bits (376), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 74/144 (51%), Positives = 98/144 (68%), Gaps = 2/144 (1%)

Query: 35  HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQS 93
           + G L   ++  V W R  SL    FGL+CC VEM  A    +D+ RFG    RASPRQ+
Sbjct: 39  YMGKLSDVLNGAVNWGRKNSLWPYNFGLSCCYVEMTTAFTAPHDVARFGAEVIRASPRQA 98

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD 153
           D M++AGT   KMA  ++R+Y+QM EP++VISMGSCAN GG Y   YSVV+G D+ +PVD
Sbjct: 99  DFMVIAGTCFIKMAPVIQRLYEQMLEPKWVISMGSCANSGGMYDI-YSVVQGVDKFLPVD 157

Query: 154 IYVPGCPPTAEALIYGILLLQKKI 177
           +Y+PGCPP  EA + G++LLQ+ I
Sbjct: 158 VYIPGCPPRPEAFLQGLMLLQESI 181


>gi|94677027|ref|YP_588824.1| NADH dehydrogenase subunit B [Baumannia cicadellinicola str. Hc
           (Homalodisca coagulata)]
 gi|238055242|sp|Q1LT90|NUOB_BAUCH RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|94220177|gb|ABF14336.1| NADH-quinone oxidoreductase, B subunit [Baumannia cicadellinicola
           str. Hc (Homalodisca coagulata)]
          Length = 224

 Score =  149 bits (376), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 79/170 (46%), Positives = 108/170 (63%), Gaps = 5/170 (2%)

Query: 12  SGQSSCSLEKVDADFSRISSEIT---HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVE 68
           S ++  SL++ D+    I   +    + G L   +  +V W R  SL    FGL+CC VE
Sbjct: 12  SKENRKSLQEDDSATLLIEQHVNSNIYLGKLKHILKSIVKWGRGNSLWPYNFGLSCCYVE 71

Query: 69  MMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMG 127
           M  +    +D+ RFG    RASPRQ+D M++AGT   KMA  ++R+YDQM EP++VISMG
Sbjct: 72  MTTSFTAVHDVARFGSEVIRASPRQADFMVIAGTPFIKMAPVIKRLYDQMLEPKWVISMG 131

Query: 128 SCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
           SCAN GG Y   YSVV+G D+ +PVD+Y+PGCPP  EA I  +LLL++ I
Sbjct: 132 SCANSGGMYDI-YSVVQGVDKFLPVDVYIPGCPPRPEAYIQALLLLKEAI 180


>gi|320540451|ref|ZP_08040101.1| putative NADH:ubiquinone oxidoreductase, chain B [Serratia
           symbiotica str. Tucson]
 gi|320029382|gb|EFW11411.1| putative NADH:ubiquinone oxidoreductase, chain B [Serratia
           symbiotica str. Tucson]
          Length = 224

 Score =  149 bits (376), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 72/142 (50%), Positives = 99/142 (69%), Gaps = 2/142 (1%)

Query: 37  GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95
           G L  +V  +V W R  S+    FGL+CC VEM+ +    +D+ RFG    RASPRQ+D+
Sbjct: 40  GKLEHAVHDMVNWGRKNSIWPYNFGLSCCYVEMVNSFTAVHDVARFGAEVLRASPRQADL 99

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
           M+VAGT   KMA  ++R+Y+QM EP++VISMG+CAN GG Y   YSVV+G D+ +PVD+Y
Sbjct: 100 MVVAGTCFTKMAPVIQRLYEQMLEPKWVISMGACANSGGMYDI-YSVVQGVDKFLPVDVY 158

Query: 156 VPGCPPTAEALIYGILLLQKKI 177
           +PGCPP  EA +  ++LLQ+ I
Sbjct: 159 IPGCPPRPEAYMQALMLLQESI 180


>gi|318606467|emb|CBY27965.1| NADH-ubiquinone oxidoreductase chain B [Yersinia enterocolitica
           subsp. palearctica Y11]
          Length = 225

 Score =  149 bits (376), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 73/142 (51%), Positives = 98/142 (69%), Gaps = 2/142 (1%)

Query: 37  GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95
           G L  ++  +V W R  SL    FGL+CC VEM+ +    +D+ RFG    RASPRQ+D 
Sbjct: 41  GKLENAMHDMVNWGRKNSLWPYNFGLSCCYVEMVTSFTAVHDVARFGAEVLRASPRQADF 100

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
           M+VAGT   KMA  ++R+Y+QM EP++VISMG+CAN GG Y   YSVV+G D+ +PVD+Y
Sbjct: 101 MVVAGTCFTKMAPVIQRLYEQMLEPKWVISMGACANSGGMYDI-YSVVQGVDKFLPVDVY 159

Query: 156 VPGCPPTAEALIYGILLLQKKI 177
           +PGCPP  EA +  +LLLQ+ I
Sbjct: 160 IPGCPPRPEAYMQALLLLQESI 181


>gi|156933123|ref|YP_001437039.1| NADH dehydrogenase subunit B [Cronobacter sakazakii ATCC BAA-894]
 gi|260598704|ref|YP_003211275.1| NADH dehydrogenase subunit B [Cronobacter turicensis z3032]
 gi|238065141|sp|A7MH23|NUOB_ENTS8 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|156531377|gb|ABU76203.1| hypothetical protein ESA_00933 [Cronobacter sakazakii ATCC BAA-894]
 gi|260217881|emb|CBA32432.1| NADH-quinone oxidoreductase subunit B [Cronobacter turicensis
           z3032]
          Length = 224

 Score =  149 bits (376), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 73/142 (51%), Positives = 98/142 (69%), Gaps = 2/142 (1%)

Query: 37  GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95
           G L  ++  +V W R  SL    FGL+CC VEM+ +    +D+ RFG    RASPRQ+D 
Sbjct: 40  GKLEHALHDMVNWGRKNSLWPYNFGLSCCYVEMVTSFTAVHDVARFGAEVLRASPRQADF 99

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
           M+VAGT   KMA  ++R+YDQM EP++VISMG+CAN GG Y   YSVV+G D+ +PVD+Y
Sbjct: 100 MVVAGTPFTKMAPVIQRLYDQMLEPKWVISMGACANSGGMYDI-YSVVQGVDKFLPVDVY 158

Query: 156 VPGCPPTAEALIYGILLLQKKI 177
           +PGCPP  EA +  ++LLQ+ I
Sbjct: 159 IPGCPPRPEAYMQALMLLQESI 180


>gi|146312473|ref|YP_001177547.1| NADH dehydrogenase subunit B [Enterobacter sp. 638]
 gi|238065140|sp|A4WCR6|NUOB_ENT38 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|145319349|gb|ABP61496.1| NADH dehydrogenase subunit B [Enterobacter sp. 638]
          Length = 224

 Score =  149 bits (376), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 76/163 (46%), Positives = 106/163 (65%), Gaps = 5/163 (3%)

Query: 19  LEKVDADFSRISSEIT---HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMP 75
           L+K +     +  EI    + G L  ++  +V W R  S+    FGL+CC VEM+ +   
Sbjct: 19  LQKQEIVTDPLEQEINKSVYMGKLEHAMHDMVNWGRKNSIWPYNFGLSCCYVEMVTSFTA 78

Query: 76  RYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGG 134
            +D+ RFG    RASPRQ+D+M+VAGT   KMA  ++R+YDQM EP++VISMG+CAN GG
Sbjct: 79  VHDVARFGAEVLRASPRQADLMVVAGTCFTKMAPVIQRLYDQMLEPKWVISMGACANSGG 138

Query: 135 YYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
            Y   YSVV+G D+ +PVD+Y+PGCPP  EA +  ++LLQ  I
Sbjct: 139 MYDI-YSVVQGVDKFIPVDVYIPGCPPRPEAYMQALMLLQDSI 180


>gi|226953551|ref|ZP_03824015.1| NADH dehydrogenase I subunit B [Acinetobacter sp. ATCC 27244]
 gi|294649461|ref|ZP_06726885.1| NADH-quinone oxidoreductase subunit B [Acinetobacter haemolyticus
           ATCC 19194]
 gi|226835729|gb|EEH68112.1| NADH dehydrogenase I subunit B [Acinetobacter sp. ATCC 27244]
 gi|292824631|gb|EFF83410.1| NADH-quinone oxidoreductase subunit B [Acinetobacter haemolyticus
           ATCC 19194]
          Length = 225

 Score =  149 bits (376), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 76/153 (49%), Positives = 102/153 (66%), Gaps = 6/153 (3%)

Query: 31  SEITHKGFLVTSVDQL----VTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP 86
            E  +K  ++T ++ +    V W R  SL    FG +CC VE        +DL RFG   
Sbjct: 28  EEEVNKSVMMTRLEDVLHTAVNWGRKNSLWPFNFGTSCCYVEYATTLTGVHDLSRFGAEV 87

Query: 87  -RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRG 145
            RASPRQ+D+MIVAGT   KMA  ++R+Y+QM EP++VISMG+CAN GG Y   YSVV+G
Sbjct: 88  IRASPRQADLMIVAGTCFVKMAPVIQRLYEQMLEPKWVISMGACANSGGMYDI-YSVVQG 146

Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
            D+I+PVD+Y+PGCPP  EALI  ++LLQ +I+
Sbjct: 147 VDKIIPVDVYIPGCPPRPEALIQALMLLQDQIQ 179


>gi|262373374|ref|ZP_06066653.1| trifunctional NADH dehydrogenase I subunit B/C/D [Acinetobacter
           junii SH205]
 gi|262313399|gb|EEY94484.1| trifunctional NADH dehydrogenase I subunit B/C/D [Acinetobacter
           junii SH205]
          Length = 225

 Score =  149 bits (376), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 76/153 (49%), Positives = 102/153 (66%), Gaps = 6/153 (3%)

Query: 31  SEITHKGFLVTSVDQL----VTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP 86
            E  +K  ++T ++ +    V W R  SL    FG +CC VE        +DL RFG   
Sbjct: 28  EEEVNKSVMMTRLEDVLHTAVNWGRKNSLWPFNFGTSCCYVEYATTLTGVHDLSRFGAEV 87

Query: 87  -RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRG 145
            RASPRQ+D+MIVAGT   KMA  ++R+Y+QM EP++VISMG+CAN GG Y   YSVV+G
Sbjct: 88  IRASPRQADLMIVAGTCFVKMAPVIQRLYEQMLEPKWVISMGACANSGGMYDI-YSVVQG 146

Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
            D+I+PVD+Y+PGCPP  EALI  ++LLQ +I+
Sbjct: 147 VDKIIPVDVYIPGCPPRPEALIQALMLLQDQIQ 179


>gi|146307436|ref|YP_001187901.1| NADH dehydrogenase subunit B [Pseudomonas mendocina ymp]
 gi|238065195|sp|A4XV03|NUOB_PSEMY RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|145575637|gb|ABP85169.1| NADH dehydrogenase subunit B [Pseudomonas mendocina ymp]
          Length = 225

 Score =  149 bits (376), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 73/149 (48%), Positives = 100/149 (67%), Gaps = 6/149 (4%)

Query: 34  THKGFLVTSVDQL----VTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RA 88
            HK   +  ++++    + W R  SL    FGL+CC VEM  A    +D+ RFG    RA
Sbjct: 34  VHKNIYMGKLEEVLNGAINWGRKNSLWPYNFGLSCCYVEMTTAFTAPHDVARFGAEVIRA 93

Query: 89  SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 148
           SPRQ+D M++AGT   KMA  ++R+Y+QM EP++VISMGSCAN GG Y   YSVV+G D+
Sbjct: 94  SPRQADFMVIAGTCFIKMAPVIQRLYEQMLEPKWVISMGSCANSGGMYDI-YSVVQGVDK 152

Query: 149 IVPVDIYVPGCPPTAEALIYGILLLQKKI 177
            +PVD+Y+PGCPP  EA + G++LLQ+ I
Sbjct: 153 FLPVDVYIPGCPPRPEAFLQGLMLLQESI 181


>gi|22125526|ref|NP_668949.1| NADH dehydrogenase subunit B [Yersinia pestis KIM 10]
 gi|45442154|ref|NP_993693.1| NADH dehydrogenase subunit B [Yersinia pestis biovar Microtus str.
           91001]
 gi|51596905|ref|YP_071096.1| NADH dehydrogenase subunit B [Yersinia pseudotuberculosis IP 32953]
 gi|108808041|ref|YP_651957.1| NADH dehydrogenase subunit B [Yersinia pestis Antiqua]
 gi|108812311|ref|YP_648078.1| NADH dehydrogenase subunit B [Yersinia pestis Nepal516]
 gi|123441677|ref|YP_001005661.1| NADH dehydrogenase subunit B [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|145599244|ref|YP_001163320.1| NADH dehydrogenase subunit B [Yersinia pestis Pestoides F]
 gi|149365540|ref|ZP_01887575.1| NADH dehydrogenase I chain B [Yersinia pestis CA88-4125]
 gi|162419739|ref|YP_001606303.1| NADH dehydrogenase subunit B [Yersinia pestis Angola]
 gi|165925479|ref|ZP_02221311.1| NADH-quinone oxidoreductase, B subunit [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165937679|ref|ZP_02226241.1| NADH-quinone oxidoreductase, B subunit [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166008478|ref|ZP_02229376.1| NADH-quinone oxidoreductase, B subunit [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166213868|ref|ZP_02239903.1| NADH-quinone oxidoreductase, B subunit [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|167398671|ref|ZP_02304195.1| NADH-quinone oxidoreductase, B subunit [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167422249|ref|ZP_02314002.1| NADH-quinone oxidoreductase, B subunit [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167424429|ref|ZP_02316182.1| NADH-quinone oxidoreductase, B subunit [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|167470575|ref|ZP_02335279.1| NADH-quinone oxidoreductase, B subunit [Yersinia pestis FV-1]
 gi|170023802|ref|YP_001720307.1| NADH dehydrogenase subunit B [Yersinia pseudotuberculosis YPIII]
 gi|186895986|ref|YP_001873098.1| NADH dehydrogenase subunit B [Yersinia pseudotuberculosis PB1/+]
 gi|218929640|ref|YP_002347515.1| NADH dehydrogenase subunit B [Yersinia pestis CO92]
 gi|229838096|ref|ZP_04458255.1| NADH:ubiquinone oxidoreductase, chain B [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229895295|ref|ZP_04510469.1| NADH:ubiquinone oxidoreductase, chain B [Yersinia pestis Pestoides
           A]
 gi|229898656|ref|ZP_04513801.1| NADH:ubiquinone oxidoreductase, chain B [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229902655|ref|ZP_04517772.1| NADH:ubiquinone oxidoreductase, chain B [Yersinia pestis Nepal516]
 gi|238759963|ref|ZP_04621116.1| NADH-quinone oxidoreductase subunit B [Yersinia aldovae ATCC 35236]
 gi|238763927|ref|ZP_04624884.1| NADH-quinone oxidoreductase subunit B [Yersinia kristensenii ATCC
           33638]
 gi|238784999|ref|ZP_04628997.1| NADH-quinone oxidoreductase subunit B [Yersinia bercovieri ATCC
           43970]
 gi|238794606|ref|ZP_04638213.1| NADH-quinone oxidoreductase subunit B [Yersinia intermedia ATCC
           29909]
 gi|238798405|ref|ZP_04641886.1| NADH-quinone oxidoreductase subunit B [Yersinia mollaretii ATCC
           43969]
 gi|270490163|ref|ZP_06207237.1| NADH dehydrogenase subunit B [Yersinia pestis KIM D27]
 gi|294504368|ref|YP_003568430.1| NADH dehydrogenase beta subunit [Yersinia pestis Z176003]
 gi|332162388|ref|YP_004298965.1| NADH dehydrogenase subunit B [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|81639043|sp|Q669A1|NUOB_YERPS RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|122979538|sp|Q1C6B0|NUOB_YERPA RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|122980104|sp|Q1CHQ2|NUOB_YERPN RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|123777024|sp|Q7CJ93|NUOB_YERPE RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|238065222|sp|A1JLG4|NUOB_YERE8 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|238065224|sp|B2K820|NUOB_YERPB RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|238065225|sp|A9R6L9|NUOB_YERPG RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|238065226|sp|A4TM35|NUOB_YERPP RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|238065227|sp|B1JGL4|NUOB_YERPY RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|21958425|gb|AAM85200.1|AE013766_3 NADH dehydrogenase I chain B [Yersinia pestis KIM 10]
 gi|45437018|gb|AAS62570.1| NADH dehydrogenase I chain B [Yersinia pestis biovar Microtus str.
           91001]
 gi|51590187|emb|CAH21824.1| NADH dehydrogenase I chain B [Yersinia pseudotuberculosis IP 32953]
 gi|108775959|gb|ABG18478.1| NADH dehydrogenase I chain B [Yersinia pestis Nepal516]
 gi|108779954|gb|ABG14012.1| NADH dehydrogenase I chain B [Yersinia pestis Antiqua]
 gi|115348251|emb|CAL21179.1| NADH dehydrogenase I chain B [Yersinia pestis CO92]
 gi|122088638|emb|CAL11433.1| NADH dehydrogenase I chain B [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|145210940|gb|ABP40347.1| NADH dehydrogenase I chain B [Yersinia pestis Pestoides F]
 gi|149291953|gb|EDM42027.1| NADH dehydrogenase I chain B [Yersinia pestis CA88-4125]
 gi|162352554|gb|ABX86502.1| NADH-quinone oxidoreductase, B subunit [Yersinia pestis Angola]
 gi|165914429|gb|EDR33044.1| NADH-quinone oxidoreductase, B subunit [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165922588|gb|EDR39739.1| NADH-quinone oxidoreductase, B subunit [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165992860|gb|EDR45161.1| NADH-quinone oxidoreductase, B subunit [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166205042|gb|EDR49522.1| NADH-quinone oxidoreductase, B subunit [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|166958755|gb|EDR55776.1| NADH-quinone oxidoreductase, B subunit [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167051175|gb|EDR62583.1| NADH-quinone oxidoreductase, B subunit [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167056311|gb|EDR66080.1| NADH-quinone oxidoreductase, B subunit [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|169750336|gb|ACA67854.1| NADH-quinone oxidoreductase, B subunit [Yersinia pseudotuberculosis
           YPIII]
 gi|186699012|gb|ACC89641.1| NADH-quinone oxidoreductase, B subunit [Yersinia pseudotuberculosis
           PB1/+]
 gi|229680102|gb|EEO76201.1| NADH:ubiquinone oxidoreductase, chain B [Yersinia pestis Nepal516]
 gi|229688204|gb|EEO80275.1| NADH:ubiquinone oxidoreductase, chain B [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229694462|gb|EEO84509.1| NADH:ubiquinone oxidoreductase, chain B [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229701781|gb|EEO89806.1| NADH:ubiquinone oxidoreductase, chain B [Yersinia pestis Pestoides
           A]
 gi|238697895|gb|EEP90655.1| NADH-quinone oxidoreductase subunit B [Yersinia kristensenii ATCC
           33638]
 gi|238701790|gb|EEP94354.1| NADH-quinone oxidoreductase subunit B [Yersinia aldovae ATCC 35236]
 gi|238714115|gb|EEQ06129.1| NADH-quinone oxidoreductase subunit B [Yersinia bercovieri ATCC
           43970]
 gi|238717719|gb|EEQ09554.1| NADH-quinone oxidoreductase subunit B [Yersinia mollaretii ATCC
           43969]
 gi|238726092|gb|EEQ17639.1| NADH-quinone oxidoreductase subunit B [Yersinia intermedia ATCC
           29909]
 gi|262362643|gb|ACY59364.1| NADH dehydrogenase beta subunit [Yersinia pestis D106004]
 gi|270338667|gb|EFA49444.1| NADH dehydrogenase subunit B [Yersinia pestis KIM D27]
 gi|294354827|gb|ADE65168.1| NADH dehydrogenase beta subunit [Yersinia pestis Z176003]
 gi|320014608|gb|ADV98179.1| NADH:ubiquinone oxidoreductase, chain B [Yersinia pestis biovar
           Medievalis str. Harbin 35]
 gi|325666618|gb|ADZ43262.1| NADH dehydrogenase subunit B [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|330860335|emb|CBX70648.1| NADH-quinone oxidoreductase subunit B [Yersinia enterocolitica
           W22703]
          Length = 225

 Score =  149 bits (376), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 73/142 (51%), Positives = 98/142 (69%), Gaps = 2/142 (1%)

Query: 37  GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95
           G L  ++  +V W R  SL    FGL+CC VEM+ +    +D+ RFG    RASPRQ+D 
Sbjct: 41  GKLENAMHDMVNWGRKNSLWPYNFGLSCCYVEMVTSFTAVHDVARFGAEVLRASPRQADF 100

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
           M+VAGT   KMA  ++R+Y+QM EP++VISMG+CAN GG Y   YSVV+G D+ +PVD+Y
Sbjct: 101 MVVAGTCFTKMAPVIQRLYEQMLEPKWVISMGACANSGGMYDI-YSVVQGVDKFLPVDVY 159

Query: 156 VPGCPPTAEALIYGILLLQKKI 177
           +PGCPP  EA +  +LLLQ+ I
Sbjct: 160 IPGCPPRPEAYMQALLLLQESI 181


>gi|149374626|ref|ZP_01892400.1| NADH dehydrogenase subunit B [Marinobacter algicola DG893]
 gi|149361329|gb|EDM49779.1| NADH dehydrogenase subunit B [Marinobacter algicola DG893]
          Length = 225

 Score =  149 bits (376), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 75/144 (52%), Positives = 96/144 (66%), Gaps = 2/144 (1%)

Query: 37  GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95
           G L   ++  V W R  SL    FGL+CC VEM  A    +D+ RFG    RASPRQ+D 
Sbjct: 41  GKLSDVLNSAVNWGRKNSLWPYNFGLSCCYVEMTTAFTAPHDIARFGSEVIRASPRQADF 100

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
           M++AGT   KMA  ++++YDQM EP++VISMGSCAN GG Y   YSVV+G D+ +PVD+Y
Sbjct: 101 MVIAGTCFIKMAPVIQQLYDQMLEPKWVISMGSCANSGGMYDI-YSVVQGVDKFLPVDVY 159

Query: 156 VPGCPPTAEALIYGILLLQKKIRR 179
           VPGCPP  EA + G+ LLQ  I+ 
Sbjct: 160 VPGCPPRPEAFLQGLQLLQDSIQE 183


>gi|50083950|ref|YP_045460.1| NADH dehydrogenase subunit B [Acinetobacter sp. ADP1]
 gi|81393679|sp|Q6FE70|NUOB_ACIAD RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|49529926|emb|CAG67638.1| NADH dehydrogenase I chain B [Acinetobacter sp. ADP1]
          Length = 225

 Score =  149 bits (376), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 77/154 (50%), Positives = 100/154 (64%), Gaps = 5/154 (3%)

Query: 29  ISSEITHKGFLVTSVDQL---VTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA 85
           +  E+    F+    D L   V W R  S+    FG +CC VE        +DL RFG  
Sbjct: 27  LQEEVNKNVFMTRLEDVLHNVVNWGRKNSVWPFNFGTSCCYVEYATTLTGVHDLSRFGAE 86

Query: 86  P-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR 144
             RASPRQ+D+MIVAGT   KMA  ++R+Y+QM EP++VISMG+CAN GG Y   YSVV+
Sbjct: 87  VIRASPRQADLMIVAGTCFVKMAPVIQRLYEQMLEPKWVISMGACANSGGMYDI-YSVVQ 145

Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           G D+I+PVD+YVPGCPP  EALI  ++LLQ +I+
Sbjct: 146 GVDKIIPVDVYVPGCPPRPEALIQALMLLQDQIQ 179


>gi|170721056|ref|YP_001748744.1| NADH dehydrogenase subunit B [Pseudomonas putida W619]
 gi|238065198|sp|B1J6N3|NUOB_PSEPW RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|169759059|gb|ACA72375.1| NADH-quinone oxidoreductase, B subunit [Pseudomonas putida W619]
          Length = 225

 Score =  149 bits (375), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 75/156 (48%), Positives = 102/156 (65%), Gaps = 6/156 (3%)

Query: 27  SRISSEITHKGFLVTSVDQL----VTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82
            ++  +  HK   +  ++ +    V W R  SL    FGL+CC VEM  A    +D+ RF
Sbjct: 27  DQLLEDQVHKNIYMGKLEDVLRGAVNWGRKNSLWPYNFGLSCCYVEMTTAFTAPHDIARF 86

Query: 83  GFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYS 141
           G    RASPRQ+D M++AGT   KMA  ++R+Y+QM EP++VISMGSCAN GG Y   YS
Sbjct: 87  GAEVIRASPRQADFMVIAGTCFIKMAPIIQRLYEQMLEPKWVISMGSCANSGGMYDI-YS 145

Query: 142 VVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
           VV+G D+ +PVD+YVPGCPP  EA + G++LLQ+ I
Sbjct: 146 VVQGVDKFLPVDVYVPGCPPRPEAFLQGLMLLQESI 181


>gi|256422834|ref|YP_003123487.1| NADH-quinone oxidoreductase, B subunit [Chitinophaga pinensis DSM
           2588]
 gi|256037742|gb|ACU61286.1| NADH-quinone oxidoreductase, B subunit [Chitinophaga pinensis DSM
           2588]
          Length = 212

 Score =  149 bits (375), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 69/148 (46%), Positives = 100/148 (67%), Gaps = 2/148 (1%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RAS 89
            E   +  ++T+V  L+ W R  S+    FGL+CC VEM  +   +YD+ RFG    R +
Sbjct: 22  EEAVSRSIMLTTVQDLLAWGRKNSMWPFHFGLSCCFVEMATSITSKYDVARFGAEVIRGT 81

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PR++DVM++AGT+  KM   ++R+++QM EPR+VISMGSCAN GG Y   YSVV+G D+ 
Sbjct: 82  PREADVMVIAGTVFIKMVPIIKRLHEQMMEPRWVISMGSCANSGGMYDI-YSVVQGVDKF 140

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKI 177
           +PVD+YVPGCPP  +A + G++LL   +
Sbjct: 141 LPVDVYVPGCPPRPDAFMQGLVLLGNSV 168


>gi|104782522|ref|YP_609020.1| NADH dehydrogenase subunit B [Pseudomonas entomophila L48]
 gi|167034688|ref|YP_001669919.1| NADH dehydrogenase subunit B [Pseudomonas putida GB-1]
 gi|122402719|sp|Q1I7Z9|NUOB_PSEE4 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|238065197|sp|B0KMX9|NUOB_PSEPG RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|95111509|emb|CAK16229.1| NADH dehydrogenase I chain B [Pseudomonas entomophila L48]
 gi|166861176|gb|ABY99583.1| NADH-quinone oxidoreductase, B subunit [Pseudomonas putida GB-1]
          Length = 225

 Score =  149 bits (375), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 75/156 (48%), Positives = 102/156 (65%), Gaps = 6/156 (3%)

Query: 27  SRISSEITHKGFLVTSVDQL----VTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82
            ++  +  HK   +  ++ +    V W R  SL    FGL+CC VEM  A    +D+ RF
Sbjct: 27  DQLLEDQVHKNIYMGKLEDVLRGAVNWGRKNSLWPYNFGLSCCYVEMTTAFTAPHDIARF 86

Query: 83  GFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYS 141
           G    RASPRQ+D M++AGT   KMA  ++R+Y+QM EP++VISMGSCAN GG Y   YS
Sbjct: 87  GAEVIRASPRQADFMVIAGTCFVKMAPIIQRLYEQMLEPKWVISMGSCANSGGMYDI-YS 145

Query: 142 VVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
           VV+G D+ +PVD+YVPGCPP  EA + G++LLQ+ I
Sbjct: 146 VVQGVDKFLPVDVYVPGCPPRPEAFLQGLMLLQESI 181


>gi|242278962|ref|YP_002991091.1| NADH-quinone oxidoreductase, B subunit [Desulfovibrio salexigens
           DSM 2638]
 gi|242121856|gb|ACS79552.1| NADH-quinone oxidoreductase, B subunit [Desulfovibrio salexigens
           DSM 2638]
          Length = 179

 Score =  149 bits (375), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 69/130 (53%), Positives = 96/130 (73%), Gaps = 3/130 (2%)

Query: 51  RTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASA 109
           R+ SL  MTFGLACCA+EMM   M R+D+ RFG    R S RQ+D+MIVAGT+T KMA A
Sbjct: 32  RSMSLWPMTFGLACCAIEMMAVGMARFDMARFGAEVFRPSARQADLMIVAGTVTKKMAPA 91

Query: 110 LRRVYDQMPEPRYVISMGSCANGGGYYHYS--YSVVRGCDRIVPVDIYVPGCPPTAEALI 167
           + R+Y+QMP P++V+++G+CA  GG + +   Y +V G D ++PVD+YVPGCPP  EAL+
Sbjct: 92  VVRLYEQMPAPKWVLALGNCAISGGPFKFKGQYGIVEGVDNLIPVDVYVPGCPPRPEALL 151

Query: 168 YGILLLQKKI 177
            G+  +Q+K+
Sbjct: 152 EGLFQIQEKV 161


>gi|86158991|ref|YP_465776.1| NADH dehydrogenase subunit B [Anaeromyxobacter dehalogenans 2CP-C]
 gi|123498617|sp|Q2IL12|NUOB1_ANADE RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName:
           Full=NADH dehydrogenase I subunit B 1; AltName:
           Full=NDH-1 subunit B 1
 gi|85775502|gb|ABC82339.1| NADH dehydrogenase subunit B [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 182

 Score =  149 bits (375), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 72/144 (50%), Positives = 102/144 (70%), Gaps = 2/144 (1%)

Query: 36  KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQSD 94
           +GFL   V + + WAR  SL    F  ACC +E M  +  RYD +RFG A PR SPRQ+D
Sbjct: 19  EGFLQGLVSKSLGWARKYSLFTYPFVTACCGMEYMTMASARYDSDRFGAAMPRFSPRQAD 78

Query: 95  VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154
           +++V GT+  K A  L+R+Y+QM +P++V++ G CA+ GG+Y  +Y+ V+G DRI+PVD+
Sbjct: 79  LLMVVGTVNCKQAPILQRIYEQMADPKWVMAFGVCASSGGFYD-NYATVQGIDRIIPVDV 137

Query: 155 YVPGCPPTAEALIYGILLLQKKIR 178
           YVPGCPP  E ++ GI+LLQKKI+
Sbjct: 138 YVPGCPPRPEQVLDGIMLLQKKIQ 161


>gi|300723691|ref|YP_003712998.1| NADH dehydrogenase I subunit B [Xenorhabdus nematophila ATCC 19061]
 gi|297630215|emb|CBJ90866.1| NADH dehydrogenase I chain B [Xenorhabdus nematophila ATCC 19061]
          Length = 224

 Score =  149 bits (375), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 72/142 (50%), Positives = 98/142 (69%), Gaps = 2/142 (1%)

Query: 37  GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95
           G L  ++  +V W R  SL    FGL+CC VEM+ +    +D+ RFG    RASPRQ+D 
Sbjct: 40  GKLENALHDMVNWGRKNSLWPYNFGLSCCYVEMVTSFTAVHDVARFGAEVLRASPRQADF 99

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
           M+++GT   KMA  ++R+YDQM EP++VISMG+CAN GG Y   YSVV+G D+ +PVD+Y
Sbjct: 100 MVISGTCFVKMAPVIQRLYDQMLEPKWVISMGACANSGGMYDI-YSVVQGVDKFIPVDVY 158

Query: 156 VPGCPPTAEALIYGILLLQKKI 177
           +PGCPP  EA +  +LLLQ+ I
Sbjct: 159 IPGCPPRPEAYMQALLLLQESI 180


>gi|197121690|ref|YP_002133641.1| NADH dehydrogenase subunit B [Anaeromyxobacter sp. K]
 gi|238065027|sp|B4UIA7|NUOB2_ANASK RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName:
           Full=NADH dehydrogenase I subunit B 2; AltName:
           Full=NDH-1 subunit B 2
 gi|196171539|gb|ACG72512.1| NADH-quinone oxidoreductase, B subunit [Anaeromyxobacter sp. K]
          Length = 182

 Score =  149 bits (375), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 72/144 (50%), Positives = 102/144 (70%), Gaps = 2/144 (1%)

Query: 36  KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQSD 94
           +GFL   V + + WAR  SL    F  ACC +E M  +  RYD +RFG A PR SPRQ+D
Sbjct: 19  EGFLQGLVSKSLGWARKYSLFTYPFVTACCGMEYMTMASARYDSDRFGAAMPRFSPRQAD 78

Query: 95  VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154
           +++V GT+  K A  L+RVY+QM +P++V++ G CA+ GG+Y  +Y+ V+G DR++PVD+
Sbjct: 79  LLMVVGTVNCKQAPILQRVYEQMADPKWVMAFGVCASSGGFYD-NYATVQGIDRVIPVDV 137

Query: 155 YVPGCPPTAEALIYGILLLQKKIR 178
           YVPGCPP  E ++ GI+LLQKKI+
Sbjct: 138 YVPGCPPRPEQVLDGIMLLQKKIQ 161


>gi|220916486|ref|YP_002491790.1| NADH-quinone oxidoreductase, B subunit [Anaeromyxobacter
           dehalogenans 2CP-1]
 gi|238065052|sp|B8JH22|NUOB_ANAD2 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|219954340|gb|ACL64724.1| NADH-quinone oxidoreductase, B subunit [Anaeromyxobacter
           dehalogenans 2CP-1]
          Length = 182

 Score =  149 bits (375), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 72/144 (50%), Positives = 102/144 (70%), Gaps = 2/144 (1%)

Query: 36  KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQSD 94
           +GFL   V + + WAR  SL    F  ACC +E M  +  RYD +RFG A PR SPRQ+D
Sbjct: 19  EGFLQGLVSKSLGWARKYSLFTYPFVTACCGMEYMTMASARYDSDRFGAAMPRFSPRQAD 78

Query: 95  VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154
           +++V GT+  K A  L+RVY+QM +P++V++ G CA+ GG+Y  +Y+ V+G DR++PVD+
Sbjct: 79  LLMVVGTVNCKQAPILQRVYEQMADPKWVMAFGVCASSGGFYD-NYATVQGIDRVIPVDV 137

Query: 155 YVPGCPPTAEALIYGILLLQKKIR 178
           YVPGCPP  E ++ GI+LLQKKI+
Sbjct: 138 YVPGCPPRPEQVLDGIMLLQKKIQ 161


>gi|238751247|ref|ZP_04612741.1| NADH-quinone oxidoreductase subunit B [Yersinia rohdei ATCC 43380]
 gi|238788653|ref|ZP_04632445.1| NADH-quinone oxidoreductase subunit B [Yersinia frederiksenii ATCC
           33641]
 gi|238710521|gb|EEQ02745.1| NADH-quinone oxidoreductase subunit B [Yersinia rohdei ATCC 43380]
 gi|238723248|gb|EEQ14896.1| NADH-quinone oxidoreductase subunit B [Yersinia frederiksenii ATCC
           33641]
          Length = 186

 Score =  149 bits (375), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 73/142 (51%), Positives = 98/142 (69%), Gaps = 2/142 (1%)

Query: 37  GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95
           G L  ++  +V W R  SL    FGL+CC VEM+ +    +D+ RFG    RASPRQ+D 
Sbjct: 2   GKLENAMHDMVNWGRKNSLWPYNFGLSCCYVEMVTSFTAVHDVARFGAEVLRASPRQADF 61

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
           M+VAGT   KMA  ++R+Y+QM EP++VISMG+CAN GG Y   YSVV+G D+ +PVD+Y
Sbjct: 62  MVVAGTCFTKMAPVIQRLYEQMLEPKWVISMGACANSGGMYDI-YSVVQGVDKFLPVDVY 120

Query: 156 VPGCPPTAEALIYGILLLQKKI 177
           +PGCPP  EA +  +LLLQ+ I
Sbjct: 121 IPGCPPRPEAYMQALLLLQESI 142


>gi|86748473|ref|YP_484969.1| NADH-quinone oxidoreductase, B subunit [Rhodopseudomonas palustris
           HaA2]
 gi|123408621|sp|Q2J0F2|NUOB_RHOP2 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|86571501|gb|ABD06058.1| NADH-quinone oxidoreductase, B subunit [Rhodopseudomonas palustris
           HaA2]
          Length = 208

 Score =  149 bits (375), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 70/140 (50%), Positives = 101/140 (72%), Gaps = 2/140 (1%)

Query: 39  LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMI 97
           L T+++ L  W+R  SL    FGL+CC VE + A  P YD  RFG    RASPRQ+D+++
Sbjct: 26  LFTTLEDLTAWSRKHSLWPFNFGLSCCYVEQVTALTPVYDQARFGAEVIRASPRQADLLV 85

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           V+GT+ +KMA+ L R+Y+QM  PR+VI+MG+CA  GG Y   YSVV+G DR +PVD+Y+P
Sbjct: 86  VSGTVFHKMAAPLLRLYEQMRAPRWVIAMGACACSGGMYDI-YSVVQGVDRFIPVDVYIP 144

Query: 158 GCPPTAEALIYGILLLQKKI 177
           GCPP  EA++  +++LQ+++
Sbjct: 145 GCPPRPEAMLDALIMLQQQV 164


>gi|119719986|ref|YP_920481.1| NADH-quinone oxidoreductase, B subunit [Thermofilum pendens Hrk 5]
 gi|119525106|gb|ABL78478.1| NADH-quinone oxidoreductase, B subunit [Thermofilum pendens Hrk 5]
          Length = 171

 Score =  149 bits (375), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 68/139 (48%), Positives = 96/139 (69%), Gaps = 1/139 (0%)

Query: 41  TSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAG 100
           T +  L  WA T SL  + F  +CC  E    S PR+D ERFGF P  SPRQ+++M++ G
Sbjct: 28  TPIRSLRDWAITFSLWPVHFTTSCCGAEFAATSAPRFDAERFGFLPFNSPRQTNLMVIEG 87

Query: 101 TLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCP 160
           TLT KM  A + VYDQMP P++VI+MG+CA  GG ++ SY++VR  D I+PV+ ++PGCP
Sbjct: 88  TLTKKMGEAAKIVYDQMPWPKFVIAMGACAIDGGLFYNSYNIVRPKD-ILPVEYFIPGCP 146

Query: 161 PTAEALIYGILLLQKKIRR 179
           P  EA+   I++LQ+K+R+
Sbjct: 147 PRPEAVAQAIIMLQEKVRK 165


>gi|11304|emb|CAA45612.1| ndhK [Glycine max]
          Length = 224

 Score =  149 bits (375), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 67/149 (44%), Positives = 100/149 (67%), Gaps = 1/149 (0%)

Query: 32  EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPR 91
           + T    + T++  L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPR
Sbjct: 8   QTTKNSVISTTLIDLSNWSRLPSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPR 67

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIV 150
           Q+D+++  GT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++
Sbjct: 68  QADLILTVGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLI 127

Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           PVD+Y+PGCP   EA+I  I  L+K+I R
Sbjct: 128 PVDVYLPGCPTKPEAIIDAITKLRKEISR 156


>gi|312961687|ref|ZP_07776185.1| NADH-quinone oxidoreductase subunit B [Pseudomonas fluorescens WH6]
 gi|311283946|gb|EFQ62529.1| NADH-quinone oxidoreductase subunit B [Pseudomonas fluorescens WH6]
          Length = 224

 Score =  149 bits (375), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 75/148 (50%), Positives = 99/148 (66%), Gaps = 6/148 (4%)

Query: 35  HKGFLVTSVDQL----VTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RAS 89
           HK   +  ++ +    V W R  SL    FGL+CC VEM  A    +D+ RFG    RAS
Sbjct: 34  HKNIYMGKLEDVLSGAVNWGRKNSLWPYNFGLSCCYVEMTTAFTAPHDIARFGAEVIRAS 93

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQ+D M++AGT   KMA  ++R+Y+QM EP++VISMGSCAN GG Y   YSVV+G D+ 
Sbjct: 94  PRQADFMVIAGTCFIKMAPIIQRLYEQMLEPKWVISMGSCANSGGMYDI-YSVVQGVDKF 152

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKI 177
           +PVD+YVPGCPP  EA + G++LLQ+ I
Sbjct: 153 LPVDVYVPGCPPRPEAFLQGLMLLQESI 180


>gi|116329153|ref|YP_798873.1| NADH dehydrogenase (ubiquinone), B chain [Leptospira borgpetersenii
           serovar Hardjo-bovis L550]
 gi|116330239|ref|YP_799957.1| NADH dehydrogenase (ubiquinone), B chain [Leptospira borgpetersenii
           serovar Hardjo-bovis JB197]
 gi|122281998|sp|Q04V71|NUOB_LEPBJ RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|122283065|sp|Q04YA5|NUOB_LEPBL RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|116121897|gb|ABJ79940.1| NADH dehydrogenase (ubiquinone), B chain [Leptospira borgpetersenii
           serovar Hardjo-bovis L550]
 gi|116123928|gb|ABJ75199.1| NADH dehydrogenase (ubiquinone), B chain [Leptospira borgpetersenii
           serovar Hardjo-bovis JB197]
          Length = 186

 Score =  149 bits (375), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 69/159 (43%), Positives = 105/159 (66%), Gaps = 2/159 (1%)

Query: 24  ADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFG 83
           +D S+   +       + +++ ++ W R  SL    F  ACC +E M  +   YD+ RFG
Sbjct: 4   SDLSKAPGQALGDMLQLGNIESVIQWGRGNSLWPFPFATACCGIEYMSTACSDYDIARFG 63

Query: 84  FA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142
              P  SPRQ+D+++V GT+T KMA  LR++YDQM EP++VIS+G+CA+ GG ++ +Y V
Sbjct: 64  AERPSFSPRQADMILVLGTITYKMAPVLRQIYDQMAEPKFVISVGACASSGGMFN-TYGV 122

Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
           ++G DRI+PVDIYVPGCPP  EA++  ++ LQ K++  G
Sbjct: 123 LQGVDRILPVDIYVPGCPPRPEAILDALVKLQTKLKTQG 161


>gi|293395171|ref|ZP_06639457.1| NADH dehydrogenase I subunit B [Serratia odorifera DSM 4582]
 gi|291422348|gb|EFE95591.1| NADH dehydrogenase I subunit B [Serratia odorifera DSM 4582]
          Length = 224

 Score =  149 bits (375), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 73/142 (51%), Positives = 98/142 (69%), Gaps = 2/142 (1%)

Query: 37  GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95
           G L  ++  +V W R  SL    FGL+CC VEM+ +    +D+ RFG    RASPRQ+D 
Sbjct: 40  GKLEHALHDMVNWGRKNSLWPYNFGLSCCYVEMVTSFTAVHDVARFGAEVLRASPRQADF 99

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
           M+VAGT   KMA  ++R+Y+QM EP++VISMG+CAN GG Y   YSVV+G D+ +PVD+Y
Sbjct: 100 MVVAGTCFTKMAPVIQRLYEQMLEPKWVISMGACANSGGMYDI-YSVVQGVDKFLPVDVY 158

Query: 156 VPGCPPTAEALIYGILLLQKKI 177
           +PGCPP  EA +  +LLLQ+ I
Sbjct: 159 IPGCPPRPEAYMQALLLLQESI 180


>gi|229591254|ref|YP_002873373.1| NADH dehydrogenase subunit B [Pseudomonas fluorescens SBW25]
 gi|259514679|sp|C3JY82|NUOB_PSEFS RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|229363120|emb|CAY50138.1| NADH-quinone oxidoreductase chain B [Pseudomonas fluorescens SBW25]
          Length = 224

 Score =  149 bits (375), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 75/148 (50%), Positives = 99/148 (66%), Gaps = 6/148 (4%)

Query: 35  HKGFLVTSVDQL----VTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RAS 89
           HK   +  ++ +    V W R  SL    FGL+CC VEM  A    +D+ RFG    RAS
Sbjct: 34  HKNIYMGKLEDVLSGAVNWGRKNSLWPYNFGLSCCYVEMTTAFTAPHDIARFGAEVIRAS 93

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQ+D M++AGT   KMA  ++R+Y+QM EP++VISMGSCAN GG Y   YSVV+G D+ 
Sbjct: 94  PRQADFMVIAGTCFIKMAPIIQRLYEQMLEPKWVISMGSCANSGGMYDI-YSVVQGVDKF 152

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKI 177
           +PVD+YVPGCPP  EA + G++LLQ+ I
Sbjct: 153 LPVDVYVPGCPPRPEAFLQGLMLLQESI 180


>gi|329296020|ref|ZP_08253356.1| NADH dehydrogenase subunit B [Plautia stali symbiont]
          Length = 225

 Score =  149 bits (375), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 73/142 (51%), Positives = 97/142 (68%), Gaps = 2/142 (1%)

Query: 37  GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95
           G L  ++  +V W R  SL    FGL+CC VEM  +    +D+ RFG    RASPRQ+D 
Sbjct: 41  GKLEHALHDMVNWGRKNSLWPYNFGLSCCYVEMTTSFTAVHDVARFGAEVMRASPRQADF 100

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
           M++AGT   KMA  ++R+YDQM EP++VISMG+CAN GG Y   YSVV+G D+ +PVD+Y
Sbjct: 101 MVIAGTPFTKMAPVIQRLYDQMLEPKWVISMGACANSGGMYDI-YSVVQGVDKFLPVDVY 159

Query: 156 VPGCPPTAEALIYGILLLQKKI 177
           +PGCPP  EA +  +LLL+K I
Sbjct: 160 IPGCPPRPEAYMQALLLLRKSI 181


>gi|66046427|ref|YP_236268.1| NADH dehydrogenase subunit B [Pseudomonas syringae pv. syringae
           B728a]
 gi|75501522|sp|Q4ZRJ2|NUOB_PSEU2 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|63257134|gb|AAY38230.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit [Pseudomonas
           syringae pv. syringae B728a]
 gi|330972908|gb|EGH72974.1| NADH dehydrogenase subunit B [Pseudomonas syringae pv. aceris str.
           M302273PT]
          Length = 224

 Score =  149 bits (375), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 75/148 (50%), Positives = 99/148 (66%), Gaps = 6/148 (4%)

Query: 35  HKGFLVTSVDQL----VTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RAS 89
           HK   +  ++ +    V W R  SL    FGL+CC VEM  A    +D+ RFG    RAS
Sbjct: 34  HKNIYMGKLEDVLSGAVNWGRKNSLWPYNFGLSCCYVEMTTAFTAPHDIARFGAEVIRAS 93

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQ+D M++AGT   KMA  ++R+Y+QM EP++VISMGSCAN GG Y   YSVV+G D+ 
Sbjct: 94  PRQADFMVIAGTCFIKMAPIIQRLYEQMLEPKWVISMGSCANSGGMYDI-YSVVQGVDKF 152

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKI 177
           +PVD+YVPGCPP  EA + G++LLQ+ I
Sbjct: 153 LPVDVYVPGCPPRPEAFLQGLMLLQESI 180


>gi|92115246|ref|YP_575174.1| NADH dehydrogenase subunit B [Chromohalobacter salexigens DSM 3043]
 gi|122419105|sp|Q1QST3|NUOB_CHRSD RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|91798336|gb|ABE60475.1| NADH dehydrogenase subunit B [Chromohalobacter salexigens DSM 3043]
          Length = 226

 Score =  148 bits (374), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 80/181 (44%), Positives = 110/181 (60%), Gaps = 5/181 (2%)

Query: 3   LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGF---LVTSVDQLVTWARTGSLMWMT 59
           LT  +Q+     +S  L + ++    +  ++    F   L   ++  V W R  SL    
Sbjct: 5   LTRADQEPAPDGASYPLGRRESTSDPMQEQVHRNVFTGKLEDVLNSTVNWGRKHSLWPYN 64

Query: 60  FGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMP 118
           FGL+CC VEM  A    +D+ RFG    RASPRQ+D M++AGT   KMA  ++++YDQM 
Sbjct: 65  FGLSCCYVEMTTAFTAPHDVARFGSEVIRASPRQADFMVIAGTCFIKMAPVIQQLYDQML 124

Query: 119 EPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           EP++VISMGSCAN GG Y   YSVV+G D+ +PVD+YVPGCPP  EA + G+ LLQ  I+
Sbjct: 125 EPKWVISMGSCANSGGMYDI-YSVVQGVDKFLPVDVYVPGCPPRPEAFLQGLQLLQDSIQ 183

Query: 179 R 179
            
Sbjct: 184 E 184


>gi|330958158|gb|EGH58418.1| NADH dehydrogenase subunit B [Pseudomonas syringae pv. maculicola
           str. ES4326]
          Length = 224

 Score =  148 bits (374), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 74/148 (50%), Positives = 99/148 (66%), Gaps = 6/148 (4%)

Query: 35  HKGFLVTSVDQL----VTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RAS 89
           HK   +  ++ +    V W R  SL    FGL+CC VEM  A    +D+ RFG    RAS
Sbjct: 34  HKNIFMGKLEDVLNGAVNWGRKNSLWPYNFGLSCCYVEMTTAFTAPHDIARFGAEVIRAS 93

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQ+D M++AGT   KMA  ++R+Y+QM EP++VISMG+CAN GG Y   YSVV+G D+ 
Sbjct: 94  PRQADFMVIAGTPFLKMAPIIQRLYEQMLEPKWVISMGACANSGGMYDI-YSVVQGVDKF 152

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKI 177
           +PVD+YVPGCPP  EA + G++LLQ+ I
Sbjct: 153 LPVDVYVPGCPPRPEAFLQGLMLLQESI 180


>gi|238897506|ref|YP_002923185.1| NADH dehydrogenase I chain B, binds FeS cluster N2 [Candidatus
           Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
 gi|229465263|gb|ACQ67037.1| NADH dehydrogenase I chain B, binds FeS cluster N2 [Candidatus
           Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
          Length = 226

 Score =  148 bits (374), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 77/168 (45%), Positives = 105/168 (62%), Gaps = 6/168 (3%)

Query: 11  ISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMM 70
           +  Q + S + +D    R      + G L  ++   V W R  SL    FGL+CC VEM+
Sbjct: 20  LQTQKNVSRDPLDEQAHRN----IYMGKLEHALHDTVNWGRKNSLWPYNFGLSCCYVEMV 75

Query: 71  QASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSC 129
            +    +D+ RFG    RASPRQ+D M+VAGT   KMA  ++R+YDQM EP++VISMG+C
Sbjct: 76  TSFTAVHDVARFGAEVLRASPRQADFMVVAGTCFTKMAPVIQRLYDQMLEPKWVISMGAC 135

Query: 130 ANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
           AN GG Y   YSVV+G D+ +PVD+Y+PGCPP  EA +  + LLQ+ I
Sbjct: 136 ANSGGMYDI-YSVVQGVDKFLPVDVYIPGCPPRPEAYMQALFLLQESI 182


>gi|323698263|ref|ZP_08110175.1| NADH-quinone oxidoreductase, B subunit [Desulfovibrio sp. ND132]
 gi|323458195|gb|EGB14060.1| NADH-quinone oxidoreductase, B subunit [Desulfovibrio desulfuricans
           ND132]
          Length = 181

 Score =  148 bits (374), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 72/130 (55%), Positives = 94/130 (72%), Gaps = 3/130 (2%)

Query: 51  RTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASA 109
           R  SL  MTFGLACCA+EMM   M R+D+ RFG    R SPRQSDVMIVAGT+  KMA +
Sbjct: 38  RAMSLWPMTFGLACCAIEMMATGMARFDMARFGAEVFRPSPRQSDVMIVAGTVNKKMAPS 97

Query: 110 LRRVYDQMPEPRYVISMGSCANGGGYYHY--SYSVVRGCDRIVPVDIYVPGCPPTAEALI 167
           + R+Y+QMP P++VI+MG+CA  GG +    +Y+V++G D ++PVD+YVPGCPP  E L+
Sbjct: 98  VVRLYEQMPGPKWVIAMGNCAISGGPFKIKDNYNVIQGVDTLIPVDVYVPGCPPRPEGLL 157

Query: 168 YGILLLQKKI 177
            G   LQ+ I
Sbjct: 158 EGFFELQRLI 167


>gi|284009321|emb|CBA76481.1| NADH-quinone oxidoreductase chain B [Arsenophonus nasoniae]
          Length = 229

 Score =  148 bits (374), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 73/142 (51%), Positives = 97/142 (68%), Gaps = 2/142 (1%)

Query: 37  GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95
           G L  ++  +V W R  SL    FGL+CC VEM+ +    +D+ RFG    RASPRQ+D 
Sbjct: 45  GKLEHALHNMVNWGRKNSLWPYNFGLSCCYVEMVTSFTAVHDVARFGAEVLRASPRQADF 104

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
           M+VAGT   KMA  ++R+YDQM  P++VISMG+CAN GG Y   YSVV+G D+ +PVD+Y
Sbjct: 105 MVVAGTCFTKMAPVIQRLYDQMLAPKWVISMGACANSGGMYDI-YSVVQGVDKFLPVDVY 163

Query: 156 VPGCPPTAEALIYGILLLQKKI 177
           +PGCPP  EA +  +LLLQ+ I
Sbjct: 164 IPGCPPRPEAYMQALLLLQESI 185


>gi|326559970|gb|EGE10368.1| NADH dehydrogenase subunit B [Moraxella catarrhalis 46P47B1]
 gi|326567656|gb|EGE17764.1| NADH dehydrogenase subunit B [Moraxella catarrhalis 12P80B1]
 gi|326569465|gb|EGE19525.1| NADH dehydrogenase subunit B [Moraxella catarrhalis BC8]
 gi|326572775|gb|EGE22761.1| NADH dehydrogenase subunit B [Moraxella catarrhalis BC7]
          Length = 223

 Score =  148 bits (374), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 77/144 (53%), Positives = 93/144 (64%), Gaps = 2/144 (1%)

Query: 37  GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95
           G L      L  W R  SL    FG +CC VE        +DL RFG    RASPRQ+DV
Sbjct: 38  GRLSDLTHNLANWGRKNSLWPFNFGTSCCYVEYATTLTGVHDLSRFGAEVIRASPRQADV 97

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
           MIVAGT   KMA  + R+Y+QM EP++VISMG+CAN GG Y   YSVV+G D+I+PVD+Y
Sbjct: 98  MIVAGTCFVKMAPVILRLYEQMLEPKWVISMGACANSGGMYDI-YSVVQGVDKILPVDVY 156

Query: 156 VPGCPPTAEALIYGILLLQKKIRR 179
           VPGCPP  EALI  ++LLQ  I+ 
Sbjct: 157 VPGCPPRPEALIQALMLLQNSIQE 180


>gi|238920566|ref|YP_002934081.1| NADH dehydrogenase subunit B [Edwardsiella ictaluri 93-146]
 gi|269139729|ref|YP_003296430.1| NADH:ubiquinone oxidoreductase 20 kD subunit and related Fe-S
           oxidoreductase [Edwardsiella tarda EIB202]
 gi|259514663|sp|C5B8I5|NUOB_EDWI9 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|238870135|gb|ACR69846.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146]
 gi|267985390|gb|ACY85219.1| NADH:ubiquinone oxidoreductase 20 kD subunit and related Fe-S
           oxidoreductase [Edwardsiella tarda EIB202]
 gi|304559596|gb|ADM42260.1| NADH-ubiquinone oxidoreductase chain B [Edwardsiella tarda FL6-60]
          Length = 224

 Score =  148 bits (373), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 72/142 (50%), Positives = 98/142 (69%), Gaps = 2/142 (1%)

Query: 37  GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95
           G L  ++  +V W R  SL    FGL+CC VEM+ +    +D+ RFG    RASPRQ+D 
Sbjct: 40  GKLDHALHDMVNWGRKNSLWPYNFGLSCCYVEMVTSFTAVHDVARFGAEVLRASPRQADF 99

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
           M+VAGT   KMA  ++R+Y+QM EP++VISMG+CAN GG Y   YSVV+G D+ +PVD+Y
Sbjct: 100 MVVAGTCFTKMAPVIQRLYEQMLEPKWVISMGACANSGGMYDI-YSVVQGVDKFIPVDVY 158

Query: 156 VPGCPPTAEALIYGILLLQKKI 177
           +PGCPP  EA +  ++LLQ+ I
Sbjct: 159 IPGCPPRPEAYMQALMLLQESI 180


>gi|238508138|ref|XP_002385270.1| NADH dehydrogenase, putative [Aspergillus flavus NRRL3357]
 gi|220688789|gb|EED45141.1| NADH dehydrogenase, putative [Aspergillus flavus NRRL3357]
          Length = 94

 Score =  148 bits (373), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 66/84 (78%), Positives = 76/84 (90%)

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
           M+VAGT+TNKMA ALR+ YDQMP+P++VISMGSCANGGGYYHYSYSVVRG DRIVPVD+Y
Sbjct: 1   MVVAGTVTNKMAPALRQCYDQMPDPKWVISMGSCANGGGYYHYSYSVVRGVDRIVPVDVY 60

Query: 156 VPGCPPTAEALIYGILLLQKKIRR 179
           +PGCPPT EA +YGI  LQKK+R 
Sbjct: 61  IPGCPPTPEAFLYGIFQLQKKMRH 84


>gi|108758077|ref|YP_630950.1| NADH dehydrogenase subunit B [Myxococcus xanthus DK 1622]
 gi|123247854|sp|Q1D8S3|NUOB_MYXXD RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|108461957|gb|ABF87142.1| NADH dehydrogenase I, B subunit [Myxococcus xanthus DK 1622]
          Length = 187

 Score =  148 bits (373), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 71/158 (44%), Positives = 107/158 (67%), Gaps = 4/158 (2%)

Query: 23  DADFSRISSEITHK--GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLE 80
           DAD + I +    +  G+L + V + + WAR  SL    +  ACC +E M  +  R+D+ 
Sbjct: 3   DADLANIVTTRRDESMGWLQSIVSKGLGWARKYSLFTYPYATACCGMEYMSVAASRHDIS 62

Query: 81  RFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS 139
           RFG   PR SPRQ+D+++V GT+  K A  L+RVY+QM EP++V++ G CA+ GG+Y  +
Sbjct: 63  RFGAEFPRFSPRQADLLMVVGTINLKQAPILKRVYEQMAEPKWVVAFGVCASSGGFYD-N 121

Query: 140 YSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
           Y+V++G DRI+PVD+Y+PGCPP  E ++ G++LLQ KI
Sbjct: 122 YAVLQGIDRIIPVDVYIPGCPPRPEQVLDGLMLLQDKI 159


>gi|294637178|ref|ZP_06715486.1| NADH dehydrogenase I subunit B [Edwardsiella tarda ATCC 23685]
 gi|291089642|gb|EFE22203.1| NADH dehydrogenase I subunit B [Edwardsiella tarda ATCC 23685]
          Length = 224

 Score =  148 bits (373), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 72/142 (50%), Positives = 98/142 (69%), Gaps = 2/142 (1%)

Query: 37  GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95
           G L  ++  +V W R  SL    FGL+CC VEM+ +    +D+ RFG    RASPRQ+D 
Sbjct: 40  GKLDHALHDMVNWGRKNSLWPYNFGLSCCYVEMVTSFTAVHDVARFGAEVLRASPRQADF 99

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
           M+VAGT   KMA  ++R+Y+QM EP++VISMG+CAN GG Y   YSVV+G D+ +PVD+Y
Sbjct: 100 MVVAGTCFTKMAPVIQRLYEQMLEPKWVISMGACANSGGMYDI-YSVVQGVDKFIPVDVY 158

Query: 156 VPGCPPTAEALIYGILLLQKKI 177
           +PGCPP  EA +  ++LLQ+ I
Sbjct: 159 IPGCPPRPEAYMQALMLLQESI 180


>gi|298346119|ref|YP_003718806.1| NADH dehydrogenase [Mobiluncus curtisii ATCC 43063]
 gi|304390121|ref|ZP_07372075.1| NADH-quinone oxidoreductase subunit B [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
 gi|315654698|ref|ZP_07907604.1| NADH-quinone oxidoreductase subunit B [Mobiluncus curtisii ATCC
           51333]
 gi|315657378|ref|ZP_07910260.1| NADH-quinone oxidoreductase subunit B [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
 gi|298236180|gb|ADI67312.1| NADH dehydrogenase (quinone) [Mobiluncus curtisii ATCC 43063]
 gi|304326603|gb|EFL93847.1| NADH-quinone oxidoreductase subunit B [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
 gi|315491162|gb|EFU80781.1| NADH-quinone oxidoreductase subunit B [Mobiluncus curtisii ATCC
           51333]
 gi|315491850|gb|EFU81459.1| NADH-quinone oxidoreductase subunit B [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
          Length = 181

 Score =  148 bits (373), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 66/137 (48%), Positives = 105/137 (76%), Gaps = 2/137 (1%)

Query: 44  DQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTL 102
           +++  +AR+ S+  +T GLACCA+EMM  +  R+D+ RFG    R+SPR +DVM+V+G +
Sbjct: 14  EKITDFARSLSIWPVTMGLACCAIEMMATAASRFDIARFGSEVFRSSPRHADVMLVSGRV 73

Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162
           ++KMA+ +R VYD+M +P++VISMG+CA+ GG ++ +Y++V+GCD +VPVDIY+PGCPP 
Sbjct: 74  SHKMATIMRNVYDEMADPKWVISMGACASSGGVFN-NYAIVQGCDHVVPVDIYLPGCPPR 132

Query: 163 AEALIYGILLLQKKIRR 179
            E L+  +L L+  I++
Sbjct: 133 PEMLLGALLSLRDHIKQ 149


>gi|330881187|gb|EGH15336.1| NADH dehydrogenase subunit B [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 224

 Score =  148 bits (373), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 74/144 (51%), Positives = 97/144 (67%), Gaps = 2/144 (1%)

Query: 35  HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQS 93
           + G L   ++  V W R  SL    FGL+CC VEM  A    +D+ RFG    R SPRQ+
Sbjct: 38  YMGKLEDVLNGAVNWGRKNSLWPYNFGLSCCYVEMTTAFTAPHDIARFGAEVIRGSPRQA 97

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD 153
           D M++AGT   KMA  ++R+Y+QM EP++VISMGSCAN GG Y   YSVV+G D+ +PVD
Sbjct: 98  DFMVIAGTCFIKMAPIIQRLYEQMLEPKWVISMGSCANSGGMYDI-YSVVQGVDKFLPVD 156

Query: 154 IYVPGCPPTAEALIYGILLLQKKI 177
           +YVPGCPP  EA + G++LLQ+ I
Sbjct: 157 VYVPGCPPRPEAFLQGLMLLQESI 180


>gi|262376776|ref|ZP_06070004.1| trifunctional NADH dehydrogenase I subunit B/C/D [Acinetobacter
           lwoffii SH145]
 gi|262308486|gb|EEY89621.1| trifunctional NADH dehydrogenase I subunit B/C/D [Acinetobacter
           lwoffii SH145]
          Length = 226

 Score =  148 bits (373), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 76/163 (46%), Positives = 104/163 (63%), Gaps = 5/163 (3%)

Query: 20  EKVDADFSRISSEITHKGFLVTSVDQL---VTWARTGSLMWMTFGLACCAVEMMQASMPR 76
           E++  +   +  E+    F+    D +   V W R  S+    FG +CC VE        
Sbjct: 19  ERIVVEDPLLEEEVNKNVFMTRLEDVVHTAVNWGRKNSVWPFNFGTSCCYVEYATTLTGV 78

Query: 77  YDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY 135
           +DL RFG    RASPRQ+D+MIVAGT   KMA  ++R+Y+QM EP++VISMG+CAN GG 
Sbjct: 79  HDLSRFGAEVIRASPRQADLMIVAGTCFVKMAPVIQRLYEQMLEPKWVISMGACANSGGM 138

Query: 136 YHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           Y   YSVV+G D+I+PVD+Y+PGCPP  EALI  ++LLQ +I+
Sbjct: 139 YDI-YSVVQGVDKIIPVDVYIPGCPPRPEALIQALMLLQDQIQ 180


>gi|85059578|ref|YP_455280.1| NADH dehydrogenase subunit B [Sodalis glossinidius str.
           'morsitans']
 gi|123519200|sp|Q2NSK0|NUOB_SODGM RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|84780098|dbj|BAE74875.1| NADH dehydrogenase I subunit B [Sodalis glossinidius str.
           'morsitans']
          Length = 224

 Score =  147 bits (372), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 74/142 (52%), Positives = 96/142 (67%), Gaps = 2/142 (1%)

Query: 37  GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95
           G L  ++   V W R  SL    FGL+CC VEM  +    +D+ RFG    RASPRQ+D 
Sbjct: 40  GKLERALHNAVNWGRGNSLWPYNFGLSCCYVEMTTSFTAVHDVARFGSEVIRASPRQADF 99

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
           M+VAGT   KMA  ++R+YDQM EP++VISMG+CAN GG Y   YSVV+G D+ +PVD+Y
Sbjct: 100 MVVAGTPFTKMAPVIQRLYDQMLEPKWVISMGACANSGGMYDI-YSVVQGVDKFLPVDVY 158

Query: 156 VPGCPPTAEALIYGILLLQKKI 177
           +PGCPP  EA I  +LLL++ I
Sbjct: 159 IPGCPPRPEAYIQALLLLKESI 180


>gi|126640811|ref|YP_001083795.1| NADH dehydrogenase I chain B [Acinetobacter baumannii ATCC 17978]
          Length = 189

 Score =  147 bits (372), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 74/133 (55%), Positives = 93/133 (69%), Gaps = 2/133 (1%)

Query: 47  VTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNK 105
           V W R  SL    FG +CC VE        +DL RFG    RASPRQ+D+MIVAGT   K
Sbjct: 12  VNWGRKNSLWPFNFGTSCCYVEYATTLTGVHDLSRFGAEVIRASPRQADLMIVAGTCFVK 71

Query: 106 MASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEA 165
           MA  ++R+Y+QM EP++VISMG+CAN GG Y   YSVV+G D+I+PVD+YVPGCPP  EA
Sbjct: 72  MAPVIQRLYEQMLEPKWVISMGACANSGGMYDI-YSVVQGVDKIIPVDVYVPGCPPRPEA 130

Query: 166 LIYGILLLQKKIR 178
           LI  ++LLQ +I+
Sbjct: 131 LIQALMLLQDQIQ 143


>gi|221136116|ref|XP_002171279.1| PREDICTED: similar to NADH dehydrogenase (ubiquinone) Fe-S protein
           7 [Hydra magnipapillata]
          Length = 175

 Score =  147 bits (372), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 67/144 (46%), Positives = 102/144 (70%), Gaps = 2/144 (1%)

Query: 36  KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA-SPRQSD 94
           +GF  T +DQ+V  AR  SL  + F  +CC +E M      YDL RFG    + SPRQ+D
Sbjct: 11  EGFFATKLDQVVGLARANSLWPLPFATSCCGIEFMATMASHYDLARFGSERVSFSPRQAD 70

Query: 95  VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154
           +++V GT++ KMA  LR+VY+QM EPR+VI++G+CA+ GG +  +YSV++G D+++PVD+
Sbjct: 71  MLLVMGTISKKMAPILRQVYEQMSEPRWVIAVGACASSGGIFD-TYSVLQGIDKVIPVDV 129

Query: 155 YVPGCPPTAEALIYGILLLQKKIR 178
           YVPGCPP  E ++ G++ LQ+ ++
Sbjct: 130 YVPGCPPRPEQIVDGVMQLQELVK 153


>gi|162148253|ref|YP_001602714.1| NADH dehydrogenase subunit B [Gluconacetobacter diazotrophicus PAl
           5]
 gi|209542893|ref|YP_002275122.1| NADH dehydrogenase subunit B [Gluconacetobacter diazotrophicus PAl
           5]
 gi|238065010|sp|A9HN98|NUOB1_GLUDA RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName:
           Full=NADH dehydrogenase I subunit B 1; AltName:
           Full=NDH-1 subunit B 1
 gi|161786830|emb|CAP56413.1| putative NADH-quinone oxidoreductase chain B [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209530570|gb|ACI50507.1| NADH-quinone oxidoreductase, B subunit [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 211

 Score =  147 bits (371), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 69/148 (46%), Positives = 101/148 (68%), Gaps = 2/148 (1%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RAS 89
           +E   +  ++  +   V+W +  S+    FGL+CC VEM  A   +YD+ RFG    RA+
Sbjct: 21  TETVKRNLVMGRLQDFVSWGQKNSIWPFNFGLSCCYVEMATAFTSKYDIARFGSEVLRAT 80

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PR++D+++++GT+  KMA  ++ +YDQM EPR+VISMGSCAN GG Y   YSVV+G D  
Sbjct: 81  PREADLIVISGTVFVKMAPIVKYLYDQMLEPRWVISMGSCANSGGMYDI-YSVVQGVDSF 139

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKI 177
           +PVD+YVPGCPP  +AL+ G++LLQ  +
Sbjct: 140 LPVDVYVPGCPPRPDALLEGLMLLQDSV 167


>gi|226944919|ref|YP_002799992.1| NADH dehydrogenase subunit B [Azotobacter vinelandii DJ]
 gi|259514652|sp|C1DL15|NUOB_AZOVD RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|226719846|gb|ACO79017.1| NADH-ubiquinone oxidoreductase, chain beta [Azotobacter vinelandii
           DJ]
          Length = 224

 Score =  147 bits (371), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 72/148 (48%), Positives = 99/148 (66%), Gaps = 6/148 (4%)

Query: 35  HKGFLVTSVDQL----VTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RAS 89
           H+   +  ++ +    V W R  SL    FGL+CC VEM  A    +D+ RFG    RAS
Sbjct: 34  HRNIFMGKLEDVLSGAVNWGRKNSLWPYNFGLSCCYVEMTTAFTAPHDIARFGAEVIRAS 93

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQ+D M++AGT   KMA  ++R+Y+QM EP++VISMGSCAN GG Y   YSVV+G D+ 
Sbjct: 94  PRQADFMVIAGTCFIKMAPIIQRLYEQMLEPKWVISMGSCANSGGMYDI-YSVVQGVDKF 152

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKI 177
           +P+D+Y+PGCPP  EA + G++LLQ+ I
Sbjct: 153 LPIDVYIPGCPPRPEAFLQGLMLLQESI 180


>gi|262369334|ref|ZP_06062662.1| NADH dehydrogenase subunit I B [Acinetobacter johnsonii SH046]
 gi|262315402|gb|EEY96441.1| NADH dehydrogenase subunit I B [Acinetobacter johnsonii SH046]
          Length = 225

 Score =  147 bits (371), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 75/153 (49%), Positives = 101/153 (66%), Gaps = 6/153 (3%)

Query: 31  SEITHKGFLVTSVDQL----VTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP 86
            E  +K   +T ++ +    V W R  S+    FG +CC VE        +DL RFG   
Sbjct: 28  EEEVNKNVFMTRLEDVAHTAVNWGRKNSVWPFNFGTSCCYVEYATTLTGVHDLSRFGAEV 87

Query: 87  -RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRG 145
            RASPRQ+D+MIVAGT   KMA  ++R+Y+QM EP++VISMG+CAN GG Y   YSVV+G
Sbjct: 88  IRASPRQADLMIVAGTCFVKMAPVIQRLYEQMLEPKWVISMGACANSGGMYDI-YSVVQG 146

Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
            D+I+PVD+Y+PGCPP  EALI  ++LLQ +I+
Sbjct: 147 VDKIIPVDVYIPGCPPRPEALIQALMLLQDQIQ 179


>gi|157371544|ref|YP_001479533.1| NADH dehydrogenase subunit B [Serratia proteamaculans 568]
 gi|238065214|sp|A8GH15|NUOB_SERP5 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|157323308|gb|ABV42405.1| NADH-quinone oxidoreductase, B subunit [Serratia proteamaculans
           568]
          Length = 224

 Score =  147 bits (371), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 71/142 (50%), Positives = 99/142 (69%), Gaps = 2/142 (1%)

Query: 37  GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95
           G L  ++  +V W R  S+    FGL+CC VEM+ +    +D+ RFG    RASPRQ+D+
Sbjct: 40  GKLEHALHDMVNWGRKNSIWPYNFGLSCCYVEMVTSFTAVHDVARFGAEVLRASPRQADL 99

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
           M+VAGT   KMA  ++R+Y+QM EP++VISMG+CAN GG Y   YSVV+G D+ +PVD+Y
Sbjct: 100 MVVAGTCFTKMAPVIQRLYEQMLEPKWVISMGACANSGGMYDI-YSVVQGVDKFLPVDVY 158

Query: 156 VPGCPPTAEALIYGILLLQKKI 177
           +PGCPP  EA +  ++LLQ+ I
Sbjct: 159 IPGCPPRPEAYMQALMLLQESI 180


>gi|315427038|dbj|BAJ48655.1| NADH dehydrogenase I subunit B [Candidatus Caldiarchaeum
           subterraneum]
          Length = 168

 Score =  147 bits (371), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 73/134 (54%), Positives = 91/134 (67%), Gaps = 2/134 (1%)

Query: 46  LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTN 104
           L+ W R  SL       ACC+VE      PRYD ERFG+ P   S RQSDV++V GT+T+
Sbjct: 29  LLNWGRMASLFPAHITTACCSVEFAATHSPRYDPERFGWLPATGSLRQSDVLVVEGTVTS 88

Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGCDRIVPVDIYVPGCPPTA 163
           KMA  LR VYDQMPEP++VI+MG+CA  GG Y   SY+V++G D I+PVD+YVPGCPP  
Sbjct: 89  KMAQRLRLVYDQMPEPKWVIAMGACAISGGLYAKDSYNVIQGIDDILPVDVYVPGCPPNP 148

Query: 164 EALIYGILLLQKKI 177
                 ILLL++KI
Sbjct: 149 STFFQAILLLREKI 162


>gi|270262813|ref|ZP_06191084.1| NADH-quinone oxidoreductase subunit B [Serratia odorifera 4Rx13]
 gi|270043497|gb|EFA16590.1| NADH-quinone oxidoreductase subunit B [Serratia odorifera 4Rx13]
          Length = 224

 Score =  147 bits (371), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 71/142 (50%), Positives = 99/142 (69%), Gaps = 2/142 (1%)

Query: 37  GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95
           G L  ++  +V W R  S+    FGL+CC VEM+ +    +D+ RFG    RASPRQ+D+
Sbjct: 40  GKLEHALHDMVNWGRKNSIWPYNFGLSCCYVEMVTSFTAVHDVARFGAEVLRASPRQADL 99

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
           M+VAGT   KMA  ++R+Y+QM EP++VISMG+CAN GG Y   YSVV+G D+ +PVD+Y
Sbjct: 100 MVVAGTCFTKMAPVIQRLYEQMLEPKWVISMGACANSGGMYDI-YSVVQGVDKFLPVDVY 158

Query: 156 VPGCPPTAEALIYGILLLQKKI 177
           +PGCPP  EA +  ++LLQ+ I
Sbjct: 159 IPGCPPRPEAYMQALMLLQESI 180


>gi|126666305|ref|ZP_01737284.1| NADH dehydrogenase subunit B [Marinobacter sp. ELB17]
 gi|126629106|gb|EAZ99724.1| NADH dehydrogenase subunit B [Marinobacter sp. ELB17]
          Length = 226

 Score =  147 bits (371), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 74/145 (51%), Positives = 97/145 (66%), Gaps = 2/145 (1%)

Query: 35  HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQS 93
           + G L  +++  V W R  SL    FGL+CC VEM  A    +D+ RFG    RASPRQ+
Sbjct: 40  YTGKLKDALNSTVNWGRKNSLWPYNFGLSCCYVEMTTAFTSPHDIARFGAEVIRASPRQA 99

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD 153
           D M++AGT   KMA  ++++YDQM EP++VISMGSCAN GG Y   YSVV+G D+ +PVD
Sbjct: 100 DFMVIAGTCFVKMAPIIQQLYDQMLEPKWVISMGSCANSGGMYDI-YSVVQGVDKFLPVD 158

Query: 154 IYVPGCPPTAEALIYGILLLQKKIR 178
           +YV GCPP  EA + G+ LLQ  I+
Sbjct: 159 VYVAGCPPRPEAFLQGLQLLQDSIQ 183


>gi|317048938|ref|YP_004116586.1| NADH-quinone oxidoreductase subunit B [Pantoea sp. At-9b]
 gi|316950555|gb|ADU70030.1| NADH-quinone oxidoreductase, B subunit [Pantoea sp. At-9b]
          Length = 225

 Score =  147 bits (371), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 72/142 (50%), Positives = 97/142 (68%), Gaps = 2/142 (1%)

Query: 37  GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95
           G L  ++  +V W R  SL    FGL+CC VEM  +    +D+ RFG    RASPRQ+D 
Sbjct: 41  GKLEHALHDMVNWGRKNSLWPYNFGLSCCYVEMTTSFTAVHDVARFGAEVMRASPRQADF 100

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
           M++AGT   KMA  ++R+YDQM EP++VISMG+CAN GG Y   YSVV+G D+ +PVD+Y
Sbjct: 101 MVIAGTPFTKMAPVIQRLYDQMLEPKWVISMGACANSGGMYDI-YSVVQGVDKFLPVDVY 159

Query: 156 VPGCPPTAEALIYGILLLQKKI 177
           +PGCPP  EA +  +LLL++ I
Sbjct: 160 IPGCPPRPEAYMQALLLLRESI 181


>gi|290475916|ref|YP_003468811.1| NADH dehydrogenase I subunit B [Xenorhabdus bovienii SS-2004]
 gi|289175244|emb|CBJ82047.1| NADH dehydrogenase I chain B [Xenorhabdus bovienii SS-2004]
          Length = 224

 Score =  147 bits (371), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 71/142 (50%), Positives = 98/142 (69%), Gaps = 2/142 (1%)

Query: 37  GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95
           G L  ++  +V W R  SL    FGL+CC VEM+ +    +D+ RFG    RASPRQ+D 
Sbjct: 40  GKLEHALHDMVNWGRKNSLWPYNFGLSCCYVEMVTSFTAVHDVARFGAEVLRASPRQADF 99

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
           M+++GT   KMA  ++R+YDQ+ EP++VISMG+CAN GG Y   YSVV+G D+ +PVD+Y
Sbjct: 100 MVISGTCFVKMAPVIQRLYDQLLEPKWVISMGACANSGGMYDI-YSVVQGVDKFIPVDVY 158

Query: 156 VPGCPPTAEALIYGILLLQKKI 177
           +PGCPP  EA +  +LLLQ+ I
Sbjct: 159 IPGCPPRPEAYMQALLLLQESI 180


>gi|300114494|ref|YP_003761069.1| NADH-quinone oxidoreductase subunit B [Nitrosococcus watsonii
           C-113]
 gi|299540431|gb|ADJ28748.1| NADH-quinone oxidoreductase, B subunit [Nitrosococcus watsonii
           C-113]
          Length = 212

 Score =  147 bits (370), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 79/172 (45%), Positives = 113/172 (65%), Gaps = 6/172 (3%)

Query: 9   KIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVE 68
           ++   Q++ S+E+    F     +   +  L   +  LV W R  SL    FGL+CC VE
Sbjct: 4   RLSKPQTAASVEQSKGSFE----DAIRRNLLFARLQDLVAWGRKNSLWPYNFGLSCCYVE 59

Query: 69  MMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMG 127
           M  +   +YD+ RFG    RA+PR++D+M+++GT+  KMA  ++R+Y+QM EPR+VISMG
Sbjct: 60  MATSFTSKYDIARFGAEVIRATPREADLMVISGTVFIKMAPVIKRLYEQMMEPRWVISMG 119

Query: 128 SCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           SCAN GG Y   YSVV+G D+ +PVD+YVPGCPP  +AL+ G+LLLQ+ I R
Sbjct: 120 SCANSGGMYDI-YSVVQGVDKFLPVDVYVPGCPPRPDALLEGLLLLQEAIGR 170


>gi|290559400|gb|EFD92732.1| NADH-quinone oxidoreductase, B subunit [Candidatus Parvarchaeum
           acidophilus ARMAN-5]
          Length = 172

 Score =  147 bits (370), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 66/138 (47%), Positives = 94/138 (68%), Gaps = 1/138 (0%)

Query: 43  VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFG-FAPRASPRQSDVMIVAGT 101
           +D ++ W R+ SL  +TFG +CCA+EMM     + D +R G      SPRQSD+++V+GT
Sbjct: 24  IDTVLNWGRSNSLWPLTFGTSCCAIEMMTFGATKVDSDRLGVLFVGDSPRQSDLILVSGT 83

Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP 161
           +T KMA  L  VY+QMP+P+YVI++G+C   GG YH SY+ + G DRI+PVD +VPGCPP
Sbjct: 84  ITKKMARRLLNVYEQMPDPKYVIAVGACNISGGLYHDSYNTIDGIDRIMPVDAFVPGCPP 143

Query: 162 TAEALIYGILLLQKKIRR 179
             E  +  + +LQK I+ 
Sbjct: 144 RPEEFLDAVRVLQKLIKE 161


>gi|90425545|ref|YP_533915.1| NADH-quinone oxidoreductase, B subunit [Rhodopseudomonas palustris
           BisB18]
 gi|122475341|sp|Q20Z40|NUOB2_RHOPB RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName:
           Full=NADH dehydrogenase I subunit B 2; AltName:
           Full=NDH-1 subunit B 2
 gi|90107559|gb|ABD89596.1| NADH-quinone oxidoreductase, B subunit [Rhodopseudomonas palustris
           BisB18]
          Length = 205

 Score =  147 bits (370), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 75/163 (46%), Positives = 108/163 (66%), Gaps = 4/163 (2%)

Query: 16  SCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMP 75
           S +L++   D S    E   +  L   ++ LV W+R  SL    FGL+CC VE + A   
Sbjct: 2   SYTLQRPGEDIS--VEEHMARTSLFARLEDLVAWSRKNSLWPFNFGLSCCYVEQVTALTS 59

Query: 76  RYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGG 134
            YD  RFG    RASPRQ+D+++V+GT+ +KMA+ L R+Y+QM  PR+VISMG+CAN GG
Sbjct: 60  VYDQARFGAEVIRASPRQADLLVVSGTVFHKMAAPLLRLYEQMRAPRWVISMGACANSGG 119

Query: 135 YYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
            Y   YSVV+G D  +PVD+Y+PGCPP  EA++  +++LQ+++
Sbjct: 120 MYDI-YSVVQGVDSFLPVDVYIPGCPPRPEAVLDALIMLQQQV 161


>gi|326799001|ref|YP_004316820.1| NAD(P)H-quinone oxidoreductase subunit K [Sphingobacterium sp. 21]
 gi|326549765|gb|ADZ78150.1| NAD(P)H-quinone oxidoreductase subunit K [Sphingobacterium sp. 21]
          Length = 183

 Score =  146 bits (369), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 69/147 (46%), Positives = 99/147 (67%), Gaps = 2/147 (1%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPR 91
           +T  GF  T++D+ V  AR  SL  + F  +CC +E M      YDL RFG   P  SPR
Sbjct: 13  VTGSGFFATTLDKAVGLARANSLWPLPFATSCCGIEFMATMGATYDLARFGAERPSFSPR 72

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
           QSD+++V GT+  KM   L++VY QM EPR+VI++G+CA+ GG +  +YSV++G D ++P
Sbjct: 73  QSDMLLVMGTIAKKMGPVLKQVYIQMAEPRWVIAVGACASSGGIFD-TYSVLQGIDEVIP 131

Query: 152 VDIYVPGCPPTAEALIYGILLLQKKIR 178
           VD+YVPGCPP  EA++ G++ LQ  +R
Sbjct: 132 VDVYVPGCPPRPEAILDGVMRLQDIVR 158


>gi|296124090|ref|YP_003631868.1| NADH-quinone oxidoreductase, subunit beta [Planctomyces limnophilus
           DSM 3776]
 gi|296016430|gb|ADG69669.1| NADH-quinone oxidoreductase, B subunit [Planctomyces limnophilus
           DSM 3776]
          Length = 230

 Score =  146 bits (369), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 70/147 (47%), Positives = 100/147 (68%), Gaps = 2/147 (1%)

Query: 39  LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMI 97
            +T+++   +WAR  SL  M F  ACC +E+M  +  R+DL RFG    R SPRQ D+MI
Sbjct: 34  FLTTLNAASSWARKNSLWPMPFATACCGIELMATASSRHDLARFGAEVMRFSPRQCDLMI 93

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAG +  KM   L+R++ QMPEP++ ISMG+CA  GG +  +Y+VV+G DR +PVD+YVP
Sbjct: 94  VAGRVAMKMMPVLQRIWLQMPEPKWCISMGACACTGGVFD-TYAVVQGIDRFIPVDLYVP 152

Query: 158 GCPPTAEALIYGILLLQKKIRRVGNVK 184
           GCPP  E LI GI+ +Q  +++ G ++
Sbjct: 153 GCPPRPEQLIAGIMQIQDLVQKTGTMQ 179


>gi|39937323|ref|NP_949599.1| NADH dehydrogenase subunit B [Rhodopseudomonas palustris CGA009]
 gi|192293103|ref|YP_001993708.1| NADH dehydrogenase subunit B [Rhodopseudomonas palustris TIE-1]
 gi|81619355|sp|Q6N1Y9|NUOB2_RHOPA RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName:
           Full=NADH dehydrogenase I subunit B 2; AltName:
           Full=NDH-1 subunit B 2
 gi|238065035|sp|B3Q6T4|NUOB2_RHOPT RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName:
           Full=NADH dehydrogenase I subunit B 2; AltName:
           Full=NDH-1 subunit B 2
 gi|39651181|emb|CAE29704.1| NADH-ubiquinone dehydrogenase chain B [Rhodopseudomonas palustris
           CGA009]
 gi|192286852|gb|ACF03233.1| NADH-quinone oxidoreductase, B subunit [Rhodopseudomonas palustris
           TIE-1]
          Length = 208

 Score =  146 bits (369), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 72/154 (46%), Positives = 103/154 (66%), Gaps = 2/154 (1%)

Query: 25  DFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF 84
           D  R   E      L T+++ L  W+R  SL    FGL+CC VE +    P YD  RFG 
Sbjct: 12  DEQRSVEEHMALSSLFTTLEDLTAWSRKHSLWPFNFGLSCCYVEQVTVLTPVYDQARFGA 71

Query: 85  AP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVV 143
              RASPRQ+D+++V+GT+ +KMA+ L R+Y+QM  PR+VI+MG+CA  GG Y   YSVV
Sbjct: 72  EVIRASPRQADLLVVSGTVFHKMAAPLLRLYEQMRAPRWVIAMGACACSGGMYDI-YSVV 130

Query: 144 RGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
           +G DR +PVD+Y+PGCPP  EA++  +++LQ+++
Sbjct: 131 QGVDRFIPVDVYIPGCPPRPEAVLDALIMLQQQV 164


>gi|300771676|ref|ZP_07081551.1| NADH-quinone oxidoreductase subunit B [Sphingobacterium
           spiritivorum ATCC 33861]
 gi|300761665|gb|EFK58486.1| NADH-quinone oxidoreductase subunit B [Sphingobacterium
           spiritivorum ATCC 33861]
          Length = 184

 Score =  146 bits (369), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 68/148 (45%), Positives = 100/148 (67%), Gaps = 2/148 (1%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPR 91
           +   GF  T++D+ +  AR  SL  + F  +CC +E M      YDL RFG   P  SPR
Sbjct: 13  VEGSGFFATTLDKAIGLARANSLWPLPFATSCCGIEFMATMGSTYDLARFGAERPSFSPR 72

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
           Q+D+++V GT+  KMA  L++VY QM EPR+VI++G+CA+ GG +  +YSV++G D I+P
Sbjct: 73  QADMLLVMGTIAKKMAPVLKQVYVQMAEPRWVIAVGACASSGGIFD-TYSVLQGIDEIIP 131

Query: 152 VDIYVPGCPPTAEALIYGILLLQKKIRR 179
           VD+YVPGCPP  EA++ G+L LQ+ ++ 
Sbjct: 132 VDVYVPGCPPRPEAILDGVLRLQEIVKN 159


>gi|316935784|ref|YP_004110766.1| NADH-quinone oxidoreductase subunit B [Rhodopseudomonas palustris
           DX-1]
 gi|315603498|gb|ADU46033.1| NADH-quinone oxidoreductase, B subunit [Rhodopseudomonas palustris
           DX-1]
          Length = 208

 Score =  146 bits (369), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 69/140 (49%), Positives = 100/140 (71%), Gaps = 2/140 (1%)

Query: 39  LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMI 97
           L T+++ L  W+R  SL    FGL+CC VE +    P YD  RFG    RASPRQ+D+++
Sbjct: 26  LFTTLEDLTAWSRKHSLWPFNFGLSCCYVEQVTVLTPVYDQARFGAEVIRASPRQADLLV 85

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           V+GT+ +KMA+ L R+Y+QM  PR+VI+MG+CA  GG Y   YSVV+G DR +PVD+Y+P
Sbjct: 86  VSGTVFHKMAAPLLRLYEQMRAPRWVIAMGACACSGGMYDI-YSVVQGVDRFIPVDVYIP 144

Query: 158 GCPPTAEALIYGILLLQKKI 177
           GCPP  EA++  +++LQ+++
Sbjct: 145 GCPPRPEAVLDALIMLQQQV 164


>gi|227535970|ref|ZP_03966019.1| NADH dehydrogenase I, chain B [Sphingobacterium spiritivorum ATCC
           33300]
 gi|227244213|gb|EEI94228.1| NADH dehydrogenase I, chain B [Sphingobacterium spiritivorum ATCC
           33300]
          Length = 184

 Score =  146 bits (369), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 68/148 (45%), Positives = 100/148 (67%), Gaps = 2/148 (1%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPR 91
           +   GF  T++D+ +  AR  SL  + F  +CC +E M      YDL RFG   P  SPR
Sbjct: 13  VEGSGFFATTLDKAIGLARANSLWPLPFATSCCGIEFMATMGSTYDLARFGAERPSFSPR 72

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
           Q+D+++V GT+  KMA  L++VY QM EPR+VI++G+CA+ GG +  +YSV++G D I+P
Sbjct: 73  QADMLLVMGTIAKKMAPVLKQVYVQMAEPRWVIAVGACASSGGIFD-TYSVLQGIDEIIP 131

Query: 152 VDIYVPGCPPTAEALIYGILLLQKKIRR 179
           VD+YVPGCPP  EA++ G+L LQ+ ++ 
Sbjct: 132 VDVYVPGCPPRPEAILDGVLRLQEIVKN 159


>gi|271501267|ref|YP_003334292.1| NADH-quinone oxidoreductase subunit B [Dickeya dadantii Ech586]
 gi|307131813|ref|YP_003883829.1| NADH:ubiquinone oxidoreductase subunit B [Dickeya dadantii 3937]
 gi|270344822|gb|ACZ77587.1| NADH-quinone oxidoreductase, B subunit [Dickeya dadantii Ech586]
 gi|306529342|gb|ADM99272.1| NADH:ubiquinone oxidoreductase, chain B [Dickeya dadantii 3937]
          Length = 224

 Score =  146 bits (368), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 73/142 (51%), Positives = 97/142 (68%), Gaps = 2/142 (1%)

Query: 37  GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95
           G L  S+  +V W R+ SL    FGL+CC VEM  +    +D+ RFG    RASPRQ+D 
Sbjct: 40  GNLEQSLHSMVNWGRSNSLWPYNFGLSCCYVEMATSFTSVHDVARFGSEVIRASPRQADF 99

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
           M+VAGT   KMA  ++R+YDQM  P++VISMG+CAN GG Y   YSVV+G D+ +PVD+Y
Sbjct: 100 MVVAGTPFLKMAPVIQRLYDQMLAPKWVISMGACANSGGMYDI-YSVVQGVDKFLPVDVY 158

Query: 156 VPGCPPTAEALIYGILLLQKKI 177
           +PGCPP  EA +  +LLL++ I
Sbjct: 159 IPGCPPRPEAYMQALLLLKESI 180


>gi|308746024|ref|YP_003934562.1| NADH-plastoquinone oxidoreductase subunit K [Cheilanthes
           lindheimeri]
 gi|302375457|gb|ADL29831.1| NADH-plastoquinone oxidoreductase subunit K [Cheilanthes
           lindheimeri]
          Length = 250

 Score =  146 bits (368), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 65/142 (45%), Positives = 96/142 (67%), Gaps = 1/142 (0%)

Query: 39  LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIV 98
            + S+      +R  SL  + +G +CC +E       R+D +R+G  PR+SPRQ+D+++ 
Sbjct: 42  FLASISDFSNRSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLIVT 101

Query: 99  AGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPVDIYVP 157
           AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++PVDI++P
Sbjct: 102 AGTITMKMAPSLIRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDIHLP 161

Query: 158 GCPPTAEALIYGILLLQKKIRR 179
           GCPP  EA+   +  L+KKI R
Sbjct: 162 GCPPKPEAITDAVTKLRKKIAR 183


>gi|261820793|ref|YP_003258899.1| NADH dehydrogenase subunit B [Pectobacterium wasabiae WPP163]
 gi|261604806|gb|ACX87292.1| NADH-quinone oxidoreductase, B subunit [Pectobacterium wasabiae
           WPP163]
          Length = 224

 Score =  146 bits (368), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 72/142 (50%), Positives = 97/142 (68%), Gaps = 2/142 (1%)

Query: 37  GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95
           G L  ++   V W R  SL    FGL+CC VEM+ +    +D+ RFG    RASPRQ+D 
Sbjct: 40  GKLEHALHDTVNWGRQNSLWPYNFGLSCCYVEMVTSFTAVHDVARFGAEVLRASPRQADF 99

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
           M+VAGT   KMA  ++R+Y+QM EP++VISMG+CAN GG Y   YSVV+G D+ +PVD+Y
Sbjct: 100 MVVAGTCFTKMAPVIQRLYEQMLEPKWVISMGACANSGGMYDI-YSVVQGVDKFLPVDVY 158

Query: 156 VPGCPPTAEALIYGILLLQKKI 177
           +PGCPP  EA +  +LLL++ I
Sbjct: 159 IPGCPPRPEAYMQALLLLKESI 180


>gi|118579068|ref|YP_900318.1| NADH-quinone oxidoreductase subunit B [Pelobacter propionicus DSM
           2379]
 gi|118580047|ref|YP_901297.1| NADH-quinone oxidoreductase subunit B [Pelobacter propionicus DSM
           2379]
 gi|118581593|ref|YP_902843.1| NADH-quinone oxidoreductase subunit B [Pelobacter propionicus DSM
           2379]
 gi|218528002|sp|A1ALP0|NUOB_PELPD RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|118501778|gb|ABK98260.1| NADH dehydrogenase subunit B [Pelobacter propionicus DSM 2379]
 gi|118502757|gb|ABK99239.1| NADH dehydrogenase subunit B [Pelobacter propionicus DSM 2379]
 gi|118504303|gb|ABL00786.1| NADH dehydrogenase subunit B [Pelobacter propionicus DSM 2379]
          Length = 163

 Score =  146 bits (368), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 69/141 (48%), Positives = 98/141 (69%), Gaps = 2/141 (1%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQSDVM 96
           +L T  D+L+ W R  S+    F  ACC +E M  +   YD +RFG A PR +PRQSD++
Sbjct: 6   YLTTRKDELIGWVRKFSIFPYPFVTACCGMEFMAVASTLYDTDRFGAALPRFTPRQSDLL 65

Query: 97  IVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV 156
           +V GT+T+K A  ++RVYDQM +P++V++ G+CA  GG Y  +Y+V++G DRI+PVDIY+
Sbjct: 66  MVVGTITHKEAPVIKRVYDQMCDPKWVMAFGACATSGGVYR-NYTVLQGVDRIIPVDIYI 124

Query: 157 PGCPPTAEALIYGILLLQKKI 177
           PGCPP  E +I  I+ LQ KI
Sbjct: 125 PGCPPRPEMVIDAIMKLQDKI 145


>gi|251789015|ref|YP_003003736.1| NADH dehydrogenase subunit B [Dickeya zeae Ech1591]
 gi|247537636|gb|ACT06257.1| NADH-quinone oxidoreductase, B subunit [Dickeya zeae Ech1591]
          Length = 224

 Score =  146 bits (368), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 73/142 (51%), Positives = 97/142 (68%), Gaps = 2/142 (1%)

Query: 37  GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95
           G L  S+  +V W R+ SL    FGL+CC VEM  +    +D+ RFG    RASPRQ+D 
Sbjct: 40  GNLEQSLHSMVNWGRSNSLWPYNFGLSCCYVEMATSFTSVHDVARFGSEVIRASPRQADF 99

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
           M+VAGT   KMA  ++R+YDQM  P++VISMG+CAN GG Y   YSVV+G D+ +PVD+Y
Sbjct: 100 MVVAGTPFLKMAPVIQRLYDQMLAPKWVISMGACANSGGMYDI-YSVVQGVDKFLPVDVY 158

Query: 156 VPGCPPTAEALIYGILLLQKKI 177
           +PGCPP  EA +  +LLL++ I
Sbjct: 159 IPGCPPRPEAYMQALLLLKESI 180


>gi|227112326|ref|ZP_03825982.1| NADH dehydrogenase subunit B [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 224

 Score =  146 bits (368), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 72/142 (50%), Positives = 97/142 (68%), Gaps = 2/142 (1%)

Query: 37  GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95
           G L  ++   V W R  SL    FGL+CC VEM+ +    +D+ RFG    RASPRQ+D 
Sbjct: 40  GKLEHALHDTVNWGRQNSLWPYNFGLSCCYVEMVTSFTAVHDVARFGAEVLRASPRQADF 99

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
           M+VAGT   KMA  ++R+Y+QM EP++VISMG+CAN GG Y   YSVV+G D+ +PVD+Y
Sbjct: 100 MVVAGTCFTKMAPVIQRLYEQMLEPKWVISMGACANSGGMYDI-YSVVQGVDKFLPVDVY 158

Query: 156 VPGCPPTAEALIYGILLLQKKI 177
           +PGCPP  EA +  +LLL++ I
Sbjct: 159 IPGCPPRPEAYMQALLLLKESI 180


>gi|50121950|ref|YP_051117.1| NADH dehydrogenase subunit B [Pectobacterium atrosepticum SCRI1043]
 gi|227326166|ref|ZP_03830190.1| NADH dehydrogenase subunit B [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
 gi|253689147|ref|YP_003018337.1| NADH-quinone oxidoreductase, B subunit [Pectobacterium carotovorum
           subsp. carotovorum PC1]
 gi|6647661|sp|O85274|NUOB_PECCC RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|81644464|sp|Q6D2R8|NUOB_ERWCT RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|259514671|sp|C6DA45|NUOB_PECCP RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|3273736|gb|AAC38641.1| NADH dehydrogenase chain B [Pectobacterium carotovorum subsp.
           carotovorum]
 gi|49612476|emb|CAG75926.1| NADH-quinone oxidoreductase chain B [Pectobacterium atrosepticum
           SCRI1043]
 gi|251755725|gb|ACT13801.1| NADH-quinone oxidoreductase, B subunit [Pectobacterium carotovorum
           subsp. carotovorum PC1]
          Length = 224

 Score =  145 bits (367), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 72/142 (50%), Positives = 97/142 (68%), Gaps = 2/142 (1%)

Query: 37  GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95
           G L  ++   V W R  SL    FGL+CC VEM+ +    +D+ RFG    RASPRQ+D 
Sbjct: 40  GKLEHALHDTVNWGRQNSLWPYNFGLSCCYVEMVTSFTAVHDVARFGAEVLRASPRQADF 99

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
           M+VAGT   KMA  ++R+Y+QM EP++VISMG+CAN GG Y   YSVV+G D+ +PVD+Y
Sbjct: 100 MVVAGTCFTKMAPVIQRLYEQMLEPKWVISMGACANSGGMYDI-YSVVQGVDKFLPVDVY 158

Query: 156 VPGCPPTAEALIYGILLLQKKI 177
           +PGCPP  EA +  +LLL++ I
Sbjct: 159 IPGCPPRPEAYMQALLLLKESI 180


>gi|146299005|ref|YP_001193596.1| NADH-quinone oxidoreductase, B subunit [Flavobacterium johnsoniae
           UW101]
 gi|238065144|sp|A5FKI9|NUOB_FLAJ1 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|146153423|gb|ABQ04277.1| NADH dehydrogenase subunit B [Flavobacterium johnsoniae UW101]
          Length = 182

 Score =  145 bits (367), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 66/147 (44%), Positives = 103/147 (70%), Gaps = 2/147 (1%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA-SPR 91
           +T +GF  T ++ +V  AR  SL  + F  +CC +E M      YDL RFG    + SPR
Sbjct: 15  LTGEGFFATKLNDVVGLARANSLWPLPFATSCCGIEFMATMAAHYDLARFGSERVSFSPR 74

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
           Q+D+++V GT++ KMA  LR+VY+QM EPR+VI++G+CA+ GG +  +YSV++G D+++P
Sbjct: 75  QADMLLVMGTISKKMAPILRQVYEQMSEPRWVIAVGACASSGGVFD-TYSVLQGIDKVIP 133

Query: 152 VDIYVPGCPPTAEALIYGILLLQKKIR 178
           VD+YVPGCPP  E ++ G++ LQ+ ++
Sbjct: 134 VDVYVPGCPPRPEQIVDGVMRLQELVK 160


>gi|66219963|gb|AAY42996.1| Nqo6 [Rhodothermus marinus]
          Length = 169

 Score =  145 bits (367), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 69/124 (55%), Positives = 95/124 (76%), Gaps = 2/124 (1%)

Query: 56  MWMTFGLACCAVEMMQASMPRYDLERFGF-APRASPRQSDVMIVAGTLTNKMASALRRVY 114
           M M  GLACCA+EMM  + P+YD+ RFG  A R SPRQ+D+MIVAG  + KMA A+RRV+
Sbjct: 1   MPMPMGLACCAIEMMAFAGPKYDVARFGSEAMRFSPRQADLMIVAGWCSYKMAHAIRRVW 60

Query: 115 DQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQ 174
           DQMP+P++ I+MG+CA+ GG  H  Y VV+G D  +PVD+Y+PGCPP  EA+++ ++ +Q
Sbjct: 61  DQMPDPKWCIAMGACASTGG-MHRCYGVVQGVDNFLPVDVYIPGCPPRPEAVLHALMDIQ 119

Query: 175 KKIR 178
           +KIR
Sbjct: 120 EKIR 123


>gi|284042616|ref|YP_003392956.1| NADH-quinone oxidoreductase, B subunit [Conexibacter woesei DSM
           14684]
 gi|283946837|gb|ADB49581.1| NADH-quinone oxidoreductase, B subunit [Conexibacter woesei DSM
           14684]
          Length = 229

 Score =  145 bits (367), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 70/140 (50%), Positives = 102/140 (72%), Gaps = 3/140 (2%)

Query: 39  LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APRASPRQSDVMI 97
           L T++D++  WAR  S+   TFGLACCA+EMM     R D+ RFGF A RASPRQ+D++I
Sbjct: 49  LTTTLDKVTAWARGNSMFPATFGLACCAIEMMSLPGARLDIGRFGFEAFRASPRQADMLI 108

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           ++G ++ KMA  +RR+YDQM EPR+ ISMG+C +  G ++ +Y++V   D+ +P+D++VP
Sbjct: 109 LSGRVSIKMAPIVRRIYDQMLEPRWAISMGACCSSMGVFN-NYALV-PADKFMPIDVHVP 166

Query: 158 GCPPTAEALIYGILLLQKKI 177
           GCPP  EAL + IL L+ K+
Sbjct: 167 GCPPRPEALAHAILKLRSKV 186


>gi|218660809|ref|ZP_03516739.1| NADH-ubiquinone oxidoreductase protein, chain B [Rhizobium etli
           IE4771]
          Length = 118

 Score =  145 bits (367), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 67/104 (64%), Positives = 86/104 (82%), Gaps = 1/104 (0%)

Query: 76  RYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY 135
           RYDL+RFG   R SPRQSDVMI+AGT+T K A  +RR+YDQMPEPR+VI+MG+CA  GG 
Sbjct: 1   RYDLDRFGVVFRPSPRQSDVMIIAGTVTRKFAPVVRRLYDQMPEPRWVIAMGTCAISGGV 60

Query: 136 YHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           Y+ +Y+VV+G +  VPVD++VPGCPP  EAL++G LLLQ+KI+R
Sbjct: 61  YN-TYAVVQGSETFVPVDVHVPGCPPRPEALMHGFLLLQEKIKR 103


>gi|303247493|ref|ZP_07333765.1| NADH-quinone oxidoreductase, B subunit [Desulfovibrio
           fructosovorans JJ]
 gi|302491189|gb|EFL51081.1| NADH-quinone oxidoreductase, B subunit [Desulfovibrio
           fructosovorans JJ]
          Length = 178

 Score =  145 bits (367), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 68/139 (48%), Positives = 100/139 (71%), Gaps = 3/139 (2%)

Query: 42  SVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAG 100
           +V ++V   R  S+  MTFG+ACCA+EMM   M R+D+ RFG    R SPRQSD+MIVAG
Sbjct: 26  AVQKIVDVCRAMSIWPMTFGIACCAIEMMAVGMARFDIARFGAEVFRPSPRQSDLMIVAG 85

Query: 101 TLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS--YSVVRGCDRIVPVDIYVPG 158
           T+  K+A  + R+++QMP PR+V+++G+CA  GG ++    Y+VV+G D ++PVD+YVPG
Sbjct: 86  TVNKKLAPLVVRLFEQMPAPRFVMALGNCAISGGPFNIEGQYNVVQGVDTLIPVDVYVPG 145

Query: 159 CPPTAEALIYGILLLQKKI 177
           CPP  E L+ G+  +Q+K+
Sbjct: 146 CPPRPEGLLEGLFAIQQKM 164


>gi|295798101|emb|CAX68920.1| NADH:quinone oxidoreductase, subunit PSST/NdhK/NuoB [uncultured
           bacterium]
          Length = 155

 Score =  145 bits (366), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 67/144 (46%), Positives = 100/144 (69%), Gaps = 2/144 (1%)

Query: 37  GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQSDV 95
            ++ + V+ L+ WAR  SL    F  ACC +E M  S   +DL+RFG A PR SPRQ+DV
Sbjct: 8   NYITSRVNDLLGWARKYSLFQYPFVTACCGMEYMSVSCAHHDLDRFGAAFPRFSPRQADV 67

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
           ++V GT+++K+A  LR VYDQM +P++V++ G C   GG+Y  +Y+ V+G D I+PVD+Y
Sbjct: 68  LLVVGTISHKLAPVLRNVYDQMCDPKWVVAFGVCTCTGGFYD-NYATVQGIDTILPVDVY 126

Query: 156 VPGCPPTAEALIYGILLLQKKIRR 179
           +PGCPP  E ++ G++ LQ+KI+ 
Sbjct: 127 IPGCPPRPENVLDGLMRLQEKIQN 150


>gi|297625729|ref|YP_003687492.1| NADH-quinone oxidoreductase chain B [Propionibacterium
           freudenreichii subsp. shermanii CIRM-BIA1]
 gi|296921494|emb|CBL56048.1| NADH-quinone oxidoreductase chain B [Propionibacterium
           freudenreichii subsp. shermanii CIRM-BIA1]
          Length = 185

 Score =  145 bits (365), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 69/146 (47%), Positives = 100/146 (68%), Gaps = 2/146 (1%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RAS 89
            E    G  +T+V+Q+  W R  S   +T GLACCA+EM+    PR D  R+G    RAS
Sbjct: 4   EEKLPAGIFLTTVEQVQGWMRQASFWPLTMGLACCAIEMISYGGPRADCSRWGQEIFRAS 63

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQ+D+MIVAG +  K+A  +R+++DQMP P++ I+MG+CA+ GG ++ +Y+VV+G D I
Sbjct: 64  PRQADLMIVAGRVGQKLAPVVRQLWDQMPNPKWCIAMGACASSGGVFN-NYAVVQGVDHI 122

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQK 175
           VPVD+Y+PGCPP  + LI  +  L+K
Sbjct: 123 VPVDMYLPGCPPRPDMLIDAVFKLKK 148


>gi|150026262|ref|YP_001297088.1| NADH dehydrogenase I, B subunit [Flavobacterium psychrophilum
           JIP02/86]
 gi|238065145|sp|A6H1R3|NUOB_FLAPJ RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|149772803|emb|CAL44287.1| NADH dehydrogenase I, B subunit [Flavobacterium psychrophilum
           JIP02/86]
          Length = 181

 Score =  145 bits (365), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 65/147 (44%), Positives = 103/147 (70%), Gaps = 2/147 (1%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA-SPR 91
           +T +GF  T ++ +V  AR  S+  + F  +CC +E M      YDL RFG    + SPR
Sbjct: 14  VTGEGFFATKLNDVVGLARANSMWPLPFATSCCGIEFMATMASHYDLARFGSERVSFSPR 73

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
           Q+D+++V GT++ KMA  LR+VY+QM EPR+VI++G+CA+ GG +  +YSV++G D+++P
Sbjct: 74  QADMLMVMGTISKKMAPILRQVYEQMAEPRWVIAVGACASSGGIFD-TYSVLQGIDKVIP 132

Query: 152 VDIYVPGCPPTAEALIYGILLLQKKIR 178
           VD+YVPGCPP  E ++ G++ LQ+ ++
Sbjct: 133 VDVYVPGCPPRPEQIVDGVMRLQELVK 159


>gi|110637786|ref|YP_677993.1| NADH dehydrogenase subunit B [Cytophaga hutchinsonii ATCC 33406]
 gi|123163626|sp|Q11VB3|NUOB2_CYTH3 RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName:
           Full=NADH dehydrogenase I subunit B 2; AltName:
           Full=NDH-1 subunit B 2
 gi|110280467|gb|ABG58653.1| NADH dehydrogenase subunit B [Cytophaga hutchinsonii ATCC 33406]
          Length = 181

 Score =  145 bits (365), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 66/139 (47%), Positives = 95/139 (68%), Gaps = 2/139 (1%)

Query: 37  GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQSDV 95
           GF  TS+D ++  AR  SL  + F  +CC +E M      YD+ RFG   P  SPRQ+DV
Sbjct: 17  GFFATSLDSVIGLARKNSLWPLPFATSCCGIEFMATMASTYDIARFGAERPSFSPRQADV 76

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
           ++V GT+  KM   LR VY+QM EP++V+++G+CA+ GG +  +YSV++G DRI+PVD+Y
Sbjct: 77  LLVMGTIAKKMGPVLRHVYEQMAEPKWVVAVGACASSGGIFD-TYSVLQGIDRIIPVDVY 135

Query: 156 VPGCPPTAEALIYGILLLQ 174
           VPGCPP  E +I G++ +Q
Sbjct: 136 VPGCPPRPEQIIQGLMRVQ 154


>gi|269986278|gb|EEZ92586.1| NADH-quinone oxidoreductase, B subunit [Candidatus Parvarchaeum
           acidiphilum ARMAN-4]
          Length = 172

 Score =  144 bits (364), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 63/138 (45%), Positives = 94/138 (68%), Gaps = 1/138 (0%)

Query: 43  VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA-SPRQSDVMIVAGT 101
           ++ ++ W R+ SL  +TFG +CCA+EMM     + D +R G      SPRQSD+++V+GT
Sbjct: 24  INTVLNWGRSNSLWPLTFGTSCCAIEMMTFGATKVDADRLGVLFNGDSPRQSDLILVSGT 83

Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP 161
           +T KMA  L  VY+Q+P+P+YVI++G+C   GG YH SY+ + G DRI+PVD ++PGCPP
Sbjct: 84  ITKKMARRLLNVYEQIPDPKYVIAVGACNVSGGLYHDSYNTIEGIDRIMPVDAFIPGCPP 143

Query: 162 TAEALIYGILLLQKKIRR 179
             E  +  + +LQK I+ 
Sbjct: 144 RPEEFLDAVRVLQKLIKE 161


>gi|157736575|ref|YP_001489258.1| NADH-quinone oxidoreductase, B subunit [Arcobacter butzleri RM4018]
 gi|315635738|ref|ZP_07891001.1| NADH-quinone oxidoreductase subunit B [Arcobacter butzleri JV22]
 gi|238065055|sp|A8ERL5|NUOB_ARCB4 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|157698429|gb|ABV66589.1| NADH-quinone oxidoreductase, B subunit [Arcobacter butzleri RM4018]
 gi|315480035|gb|EFU70705.1| NADH-quinone oxidoreductase subunit B [Arcobacter butzleri JV22]
          Length = 171

 Score =  144 bits (364), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 69/148 (46%), Positives = 100/148 (67%), Gaps = 2/148 (1%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APRASPRQSDVM 96
            + T +D  V W R+ SL  M FG ACC +E M  +  +YD+ RFG    R SPRQ+D++
Sbjct: 13  IVTTRLDHAVNWGRSYSLWPMAFGTACCGIEFMAVAGAKYDVSRFGAEVVRFSPRQADLL 72

Query: 97  IVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV 156
           IVAGT++ K A  L+++Y+QM EP++VISMG+CA  GG+Y  +Y+ V+G D I+PVD YV
Sbjct: 73  IVAGTISYKQAPILKKIYEQMCEPKWVISMGACACSGGFYD-NYTTVQGIDEIIPVDEYV 131

Query: 157 PGCPPTAEALIYGILLLQKKIRRVGNVK 184
            GCPP  EA++  I+ +Q+K +    +K
Sbjct: 132 AGCPPRPEAVLDAIMRIQEKAKTESIIK 159


>gi|292492188|ref|YP_003527627.1| NADH-quinone oxidoreductase subunit beta [Nitrosococcus halophilus
           Nc4]
 gi|291580783|gb|ADE15240.1| NADH-quinone oxidoreductase, B subunit [Nitrosococcus halophilus
           Nc4]
          Length = 212

 Score =  144 bits (363), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 76/165 (46%), Positives = 110/165 (66%), Gaps = 6/165 (3%)

Query: 14  QSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQAS 73
           +++ S+E+    F     +   +  L   +  L+ W R  S+    FGL+CC VEM  + 
Sbjct: 9   KTAASIEQSKGSFE----DAIRRNLLFARLQDLIAWGRKNSIWPFNFGLSCCYVEMATSF 64

Query: 74  MPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANG 132
             +YDL RFG    RA+PR++D+M+++GT+  KMA  ++R+Y+QM EPR+VISMGSCAN 
Sbjct: 65  TSKYDLGRFGSEIIRATPREADLMVISGTVFIKMAPVIKRLYEQMMEPRWVISMGSCANS 124

Query: 133 GGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
           GG Y   YSVV+G D+ +PVD+YVPGCPP  +AL+ G+LLLQ+ I
Sbjct: 125 GGMYDI-YSVVQGVDKFLPVDVYVPGCPPRPDALLEGLLLLQEAI 168


>gi|312131895|ref|YP_003999235.1| NADH dehydrogenase subunit b [Leadbetterella byssophila DSM 17132]
 gi|311908441|gb|ADQ18882.1| NADH dehydrogenase subunit B [Leadbetterella byssophila DSM 17132]
          Length = 185

 Score =  144 bits (363), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 66/140 (47%), Positives = 99/140 (70%), Gaps = 2/140 (1%)

Query: 37  GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQSDV 95
           GF  TS+D+++  AR+ SL  + F  +CC +E M      YD+ RFG   P  SPRQSDV
Sbjct: 17  GFFATSLDKVIGLARSHSLWPLPFATSCCGIEFMATMGAHYDISRFGAERPSFSPRQSDV 76

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
           ++V GT+  KMA  +++VY QM EPR+VI++G+CA+ GG +  +YSV++G DR++PVD+Y
Sbjct: 77  LLVMGTIAKKMAPVVKQVYLQMAEPRWVIAVGACASSGGIFD-TYSVLQGIDRVIPVDVY 135

Query: 156 VPGCPPTAEALIYGILLLQK 175
           VPGCPP  E ++ G++ +Q+
Sbjct: 136 VPGCPPRPEQILDGLMQVQE 155


>gi|326402924|ref|YP_004283005.1| NADH-quinone oxidoreductase subunit B [Acidiphilium multivorum
           AIU301]
 gi|325049785|dbj|BAJ80123.1| NADH-quinone oxidoreductase subunit B [Acidiphilium multivorum
           AIU301]
          Length = 231

 Score =  144 bits (363), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 67/148 (45%), Positives = 101/148 (68%), Gaps = 2/148 (1%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RAS 89
           ++   +   +  ++ +V W R  S+    FGL+CC VEM  A   ++D+ RFG    RA+
Sbjct: 41  TDAVRRNVALGRLEDMVAWGRKYSIWPFNFGLSCCYVEMATAFTSKFDIARFGSEVLRAT 100

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PR++D+++++GT+  KMA  ++ +YDQM EPR+VISMG+CAN GG Y   Y+VV+G D  
Sbjct: 101 PREADLIVISGTVFVKMAPVIKYLYDQMLEPRWVISMGACANSGGMYDI-YAVVQGADSF 159

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKI 177
           +PVD+YVPGCPP  +AL+ G++LLQ  I
Sbjct: 160 LPVDVYVPGCPPRPDALLEGLMLLQNSI 187


>gi|148260123|ref|YP_001234250.1| NADH-quinone oxidoreductase, B subunit [Acidiphilium cryptum JF-5]
 gi|238065025|sp|A5FXJ9|NUOB2_ACICJ RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName:
           Full=NADH dehydrogenase I subunit B 2; AltName:
           Full=NDH-1 subunit B 2
 gi|146401804|gb|ABQ30331.1| NADH dehydrogenase subunit B [Acidiphilium cryptum JF-5]
          Length = 231

 Score =  144 bits (363), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 67/148 (45%), Positives = 101/148 (68%), Gaps = 2/148 (1%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RAS 89
           ++   +   +  ++ +V W R  S+    FGL+CC VEM  A   ++D+ RFG    RA+
Sbjct: 41  TDAVRRNVALGRLEDMVAWGRKYSIWPFNFGLSCCYVEMATAFTSKFDIARFGSEVLRAT 100

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PR++D+++++GT+  KMA  ++ +YDQM EPR+VISMG+CAN GG Y   Y+VV+G D  
Sbjct: 101 PREADLIVISGTVFVKMAPVIKYLYDQMLEPRWVISMGACANSGGMYDI-YAVVQGADSF 159

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKI 177
           +PVD+YVPGCPP  +AL+ G++LLQ  I
Sbjct: 160 LPVDVYVPGCPPRPDALLEGLMLLQNSI 187


>gi|325105666|ref|YP_004275320.1| NADH dehydrogenase subunit B [Pedobacter saltans DSM 12145]
 gi|324974514|gb|ADY53498.1| NADH dehydrogenase subunit B [Pedobacter saltans DSM 12145]
          Length = 180

 Score =  144 bits (363), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 67/158 (42%), Positives = 101/158 (63%), Gaps = 2/158 (1%)

Query: 23  DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82
           D   +   + +   GF  T++DQ++  AR+ SL  + F  +CC +E M      YD  RF
Sbjct: 3   DIKMANAPAGVEGSGFFATTLDQVIGLARSHSLWPLPFATSCCGIEFMATMGAHYDFSRF 62

Query: 83  GFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYS 141
           G   P  SPRQ+D+++V GT+  KMA  L++VY QM EPR+VI++G+CA+ GG +  +YS
Sbjct: 63  GSERPSFSPRQADLLMVMGTIAKKMAPVLKQVYTQMAEPRWVIAVGACASSGGIFD-TYS 121

Query: 142 VVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           V++G D I+PVD+YVPGCPP  E +I G   +Q+ ++ 
Sbjct: 122 VLQGIDEIIPVDVYVPGCPPRPEGIIDGFNKIQELVKN 159


>gi|91773272|ref|YP_565964.1| F420H2 dehydrogenase subunit B [Methanococcoides burtonii DSM 6242]
 gi|91712287|gb|ABE52214.1| F420H2 dehydrogenase subunit B [Methanococcoides burtonii DSM 6242]
          Length = 184

 Score =  144 bits (363), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 62/137 (45%), Positives = 89/137 (64%)

Query: 41  TSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAG 100
           T    L+ W R  SL ++T  + CC VEM+      YD +RFG  PR SPR +DVMI++G
Sbjct: 38  TKAQDLINWGRKNSLWFLTQPMGCCGVEMIATGCAHYDTDRFGIIPRNSPRAADVMIISG 97

Query: 101 TLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCP 160
            +T K   AL  +++QM  P++VI MG C+  GG ++ SYS V+  D++ P+D+++PGCP
Sbjct: 98  YVTKKYLPALNTLWEQMAAPKWVICMGDCSISGGPFYESYSTVQNIDKMFPIDVFIPGCP 157

Query: 161 PTAEALIYGILLLQKKI 177
           P  EAL+ G + LQKKI
Sbjct: 158 PRPEALLQGFIELQKKI 174


>gi|284039943|ref|YP_003389873.1| NADH-quinone oxidoreductase subunit beta [Spirosoma linguale DSM
           74]
 gi|283819236|gb|ADB41074.1| NADH-quinone oxidoreductase, B subunit [Spirosoma linguale DSM 74]
          Length = 181

 Score =  144 bits (363), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 67/154 (43%), Positives = 100/154 (64%), Gaps = 2/154 (1%)

Query: 23  DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82
           D   +   +     GF  TS D+++  AR  SL  + F  +CC +E M      YDL RF
Sbjct: 4   DIKLAEAPASYDGPGFSATSFDKIIGLARANSLWPLPFATSCCGIEFMSTMASHYDLARF 63

Query: 83  GFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYS 141
           G   P  SPRQ+D+++VAGT+  KM   +++VY QM EPR+VI++G+CA+ GG +  +YS
Sbjct: 64  GSERPSFSPRQADMLLVAGTIAKKMGPIVKQVYLQMAEPRWVIAIGACASSGGIFD-TYS 122

Query: 142 VVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175
           V++G DRI+PVD+YVPGCPP  E ++ G++ +Q+
Sbjct: 123 VLQGIDRIIPVDVYVPGCPPRPEQILEGVMQVQE 156


>gi|254496122|ref|ZP_05109021.1| NADH dehydrogenase I, truncated B subunit [Legionella drancourtii
           LLAP12]
 gi|254354663|gb|EET13299.1| NADH dehydrogenase I, truncated B subunit [Legionella drancourtii
           LLAP12]
          Length = 80

 Score =  144 bits (362), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 65/74 (87%), Positives = 71/74 (95%)

Query: 106 MASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEA 165
           MA ALR+VYDQMPEPR+V+SMGSCANGGGYYHYSYSVVRGCDRIVPVD+YVPGCPPTAEA
Sbjct: 1   MAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEA 60

Query: 166 LIYGILLLQKKIRR 179
           L+YGI+ LQ KIRR
Sbjct: 61  LLYGIIQLQNKIRR 74


>gi|317050795|ref|YP_004111911.1| NADH-quinone oxidoreductase subunit B [Desulfurispirillum indicum
           S5]
 gi|316945879|gb|ADU65355.1| NADH-quinone oxidoreductase, B subunit [Desulfurispirillum indicum
           S5]
          Length = 208

 Score =  144 bits (362), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 63/145 (43%), Positives = 101/145 (69%), Gaps = 1/145 (0%)

Query: 36  KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSD 94
           +G ++T+++++  W R+ SL  +++  ACC +EM+ +S P++D+ RFG    RASPRQ+D
Sbjct: 25  QGVIITTLEKVYNWGRSNSLWPLSYATACCGIEMISSSCPQHDIARFGSEVFRASPRQAD 84

Query: 95  VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154
           +MI+AGT+T KM   +  +++Q+ EP+Y I+MG+C   GG + YS SVV      +P+D+
Sbjct: 85  LMILAGTITKKMMPQVVTLWEQIAEPKYAIAMGNCVITGGIFKYSPSVVANVPDYIPIDV 144

Query: 155 YVPGCPPTAEALIYGILLLQKKIRR 179
           ++PGC P  EAL  GI+ LQ +IRR
Sbjct: 145 FIPGCAPRPEALFNGIITLQHQIRR 169


>gi|115378556|ref|ZP_01465711.1| NADH-quinone oxidoreductase chain b [Stigmatella aurantiaca
           DW4/3-1]
 gi|310820744|ref|YP_003953102.1| NADH-quinone oxidoreductase chain b [Stigmatella aurantiaca
           DW4/3-1]
 gi|115364428|gb|EAU63508.1| NADH-quinone oxidoreductase chain b [Stigmatella aurantiaca
           DW4/3-1]
 gi|309393816|gb|ADO71275.1| NADH-quinone oxidoreductase chain B [Stigmatella aurantiaca
           DW4/3-1]
          Length = 187

 Score =  144 bits (362), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 69/141 (48%), Positives = 98/141 (69%), Gaps = 2/141 (1%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQSDVM 96
           FL   V + + WAR  SL    +  ACC +E M  +  R+DL RFG   PR SPRQ+D++
Sbjct: 20  FLQRVVSKGLGWARKYSLFTYPYATACCGMEYMSVAGGRHDLARFGAEYPRFSPRQADML 79

Query: 97  IVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV 156
           +V GT+  K A  L+RVY+QM EP++V++ G CA+ GG+Y  +Y+V++G DRI+PVD+Y+
Sbjct: 80  LVTGTINLKQAPILKRVYEQMCEPKWVVAFGVCASSGGFYD-NYAVLQGIDRIIPVDVYI 138

Query: 157 PGCPPTAEALIYGILLLQKKI 177
           PGCPP  E ++  ILLLQ+KI
Sbjct: 139 PGCPPRPEQVLDAILLLQEKI 159


>gi|304311496|ref|YP_003811094.1| NADH dehydrogenase I, chain B [gamma proteobacterium HdN1]
 gi|301797229|emb|CBL45449.1| NADH dehydrogenase I, chain B [gamma proteobacterium HdN1]
          Length = 224

 Score =  143 bits (361), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 73/142 (51%), Positives = 95/142 (66%), Gaps = 2/142 (1%)

Query: 37  GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95
           G L   +  +V W R  S+    FGL+CC VE+  A    +D+ RFG    RASPRQ+D+
Sbjct: 40  GRLEDMLHGVVNWGRKNSIWPYNFGLSCCYVEVTTAFTAPHDIARFGSEVLRASPRQADL 99

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
           M+VAGT   KMA  ++R+Y+QM EPR+VISMG+CAN GG Y   YSVV+G D+ +PVD+Y
Sbjct: 100 MVVAGTCFVKMAPVVQRLYEQMLEPRWVISMGACANSGGMYDI-YSVVQGVDKFLPVDVY 158

Query: 156 VPGCPPTAEALIYGILLLQKKI 177
           VPGCPP  EA +  + LLQ  I
Sbjct: 159 VPGCPPRPEAFLQALQLLQDSI 180


>gi|262197697|ref|YP_003268906.1| NADH-quinone oxidoreductase subunit beta [Haliangium ochraceum DSM
           14365]
 gi|262081044|gb|ACY17013.1| NADH-quinone oxidoreductase, B subunit [Haliangium ochraceum DSM
           14365]
          Length = 167

 Score =  143 bits (360), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 62/143 (43%), Positives = 95/143 (66%), Gaps = 2/143 (1%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQSDVM 96
            + T V+    W R  SL    F  ACC +E M  + P+YD+ RFG   PR SPRQSD++
Sbjct: 5   LVTTRVEDAANWGRKFSLFTYPFVTACCGMEFMSVAAPKYDIARFGAEFPRFSPRQSDLL 64

Query: 97  IVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV 156
           +V GT+T +    L+RVY+QM EP +V++ G CA+ GG+Y  +YS + G D+++PVDIY+
Sbjct: 65  MVVGTITERQGPVLKRVYEQMAEPNWVVAFGVCASTGGFYQ-NYSAMPGADQVIPVDIYI 123

Query: 157 PGCPPTAEALIYGILLLQKKIRR 179
           PGCPP  E ++  +++LQ++++ 
Sbjct: 124 PGCPPRPEQVLDALIMLQQRVQE 146


>gi|330830046|ref|YP_004392998.1| NADH-quinone oxidoreductase subunit B [Aeromonas veronii B565]
 gi|328805182|gb|AEB50381.1| NADH-quinone oxidoreductase subunit B [Aeromonas veronii B565]
          Length = 224

 Score =  143 bits (360), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 72/159 (45%), Positives = 101/159 (63%), Gaps = 2/159 (1%)

Query: 20  EKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDL 79
           + VD   ++ ++     G L   +   V W R  SL    FG++CC VEM  A    +D+
Sbjct: 23  QTVDDPLAQEATRGIMMGRLEEVLQDTVNWGRKNSLWPYNFGISCCYVEMCTAFTSPHDV 82

Query: 80  ERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY 138
            RFG    RASPRQ+D M++AGT   KMA  ++R+Y+Q+ EP++VISMG+CAN GG Y  
Sbjct: 83  ARFGAEVIRASPRQADFMVIAGTPFIKMAPVIQRLYEQLLEPKWVISMGACANSGGMYDI 142

Query: 139 SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
            YSVV+G D+ +PVD+Y+PGCPP  EA +  ++LLQ  I
Sbjct: 143 -YSVVQGVDKFLPVDVYIPGCPPRPEAFLQALMLLQDSI 180


>gi|145298722|ref|YP_001141563.1| NADH dehydrogenase subunit B [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|238065069|sp|A4SLP3|NUOB_AERS4 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|142851494|gb|ABO89815.1| NADH dehydrogenase I, B subunit [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 224

 Score =  143 bits (360), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 72/159 (45%), Positives = 101/159 (63%), Gaps = 2/159 (1%)

Query: 20  EKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDL 79
           + VD   ++ ++     G L   +   V W R  SL    FG++CC VEM  A    +D+
Sbjct: 23  QTVDDPLAQDATRGIMMGRLEEVLQDTVNWGRKNSLWPYNFGISCCYVEMCTAFTSPHDV 82

Query: 80  ERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY 138
            RFG    RASPRQ+D M++AGT   KMA  ++R+Y+Q+ EP++VISMG+CAN GG Y  
Sbjct: 83  ARFGAEVIRASPRQADFMVIAGTPFIKMAPVIQRLYEQLLEPKWVISMGACANSGGMYDI 142

Query: 139 SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
            YSVV+G D+ +PVD+Y+PGCPP  EA +  ++LLQ  I
Sbjct: 143 -YSVVQGVDKFLPVDVYIPGCPPRPEAFLQALMLLQDSI 180


>gi|24372606|ref|NP_716648.1| NADH dehydrogenase subunit B [Shewanella oneidensis MR-1]
 gi|81589369|sp|Q8EI30|NUOB_SHEON RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|24346631|gb|AAN54093.1|AE015546_10 NADH dehydrogenase I, B subunit [Shewanella oneidensis MR-1]
          Length = 224

 Score =  143 bits (360), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 72/159 (45%), Positives = 101/159 (63%), Gaps = 2/159 (1%)

Query: 20  EKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDL 79
           + VD   ++ ++     G L   +   V W R  SL    FG++CC VEM  A    +D+
Sbjct: 23  QTVDDPLAQEATRGIMMGRLEEVLKDTVNWGRKNSLWPYNFGISCCYVEMCTAFTSPHDV 82

Query: 80  ERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY 138
            RFG    RASPRQ+D M++AGT   KMA  ++R+Y+Q+ EP++VISMG+CAN GG Y  
Sbjct: 83  ARFGAEVIRASPRQADFMVIAGTPFIKMAPVIQRLYEQLLEPKWVISMGACANSGGMYDI 142

Query: 139 SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
            YSVV+G D+ +PVD+Y+PGCPP  EA +  ++LLQ  I
Sbjct: 143 -YSVVQGVDKFLPVDVYIPGCPPRPEAFLQALMLLQDSI 180


>gi|320354161|ref|YP_004195500.1| NADH dehydrogenase subunit B [Desulfobulbus propionicus DSM 2032]
 gi|320122663|gb|ADW18209.1| NADH dehydrogenase subunit B [Desulfobulbus propionicus DSM 2032]
          Length = 170

 Score =  143 bits (360), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 64/141 (45%), Positives = 98/141 (69%), Gaps = 2/141 (1%)

Query: 39  LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APRASPRQSDVMI 97
           L T +D ++ W R  SL    FG ACCA+E M A+  + D+ R+G    R SPRQ+D+++
Sbjct: 14  LTTKLDAVINWGREYSLWPFVFGTACCAIEFMSAAASQLDISRWGAEVVRFSPRQADLLL 73

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           V GT++ K A  L+R+Y+QMPEP++V++MG+CA+ GG Y  +Y  V+G D I+PVD+Y+ 
Sbjct: 74  VCGTISYKQAPILKRIYEQMPEPKWVVAMGACASSGGVYD-NYCTVQGIDTIIPVDVYIS 132

Query: 158 GCPPTAEALIYGILLLQKKIR 178
           GCPP  EA++  ++ +Q KI+
Sbjct: 133 GCPPRPEAVLDALMKIQDKIK 153


>gi|332662314|ref|YP_004445102.1| NAD(P)H-quinone oxidoreductase subunit K [Haliscomenobacter
           hydrossis DSM 1100]
 gi|332331128|gb|AEE48229.1| NAD(P)H-quinone oxidoreductase subunit K [Haliscomenobacter
           hydrossis DSM 1100]
          Length = 179

 Score =  143 bits (360), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 66/147 (44%), Positives = 100/147 (68%), Gaps = 2/147 (1%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA-SPRQ 92
           T +GF  TS D+ +  AR  S+  + F  +CC +E M      YDL RFG    + SPRQ
Sbjct: 13  TGQGFFATSFDKAIGLARANSIWPLPFATSCCGIEFMATMGAHYDLARFGSERLSFSPRQ 72

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           +D+++V GT+  KM   L++VY QM EPR+V+S+G+CA  GG +  +YSV++G D+++PV
Sbjct: 73  ADLLMVMGTIAKKMGPVLKQVYLQMAEPRWVLSVGACACSGGIFD-TYSVLQGIDKVIPV 131

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179
           D+YVPGCPPT EA+I G++ +Q+ ++ 
Sbjct: 132 DVYVPGCPPTPEAIIDGVMKIQELVKN 158


>gi|312890395|ref|ZP_07749932.1| NADH dehydrogenase subunit B [Mucilaginibacter paludis DSM 18603]
 gi|311297165|gb|EFQ74297.1| NADH dehydrogenase subunit B [Mucilaginibacter paludis DSM 18603]
          Length = 180

 Score =  142 bits (359), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 71/148 (47%), Positives = 101/148 (68%), Gaps = 4/148 (2%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS--P 90
           +   GF  TS+D+ V  AR+ SL  + F  +CC +E M      YDL RFG A R S  P
Sbjct: 13  VEGSGFFATSLDKAVGLARSYSLWPLPFATSCCGIEFMATMGSHYDLSRFG-AERLSFSP 71

Query: 91  RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150
           RQ+D+++V GT+  KMA  LR+VY QM EPR+V+++G+CA+ GG +  +YSV++G D I+
Sbjct: 72  RQADLLMVMGTIAKKMAPVLRQVYLQMAEPRWVMAVGACASSGGIFD-TYSVLQGIDEII 130

Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIR 178
           PVD+YVPGCPP  EA+I G + +QK ++
Sbjct: 131 PVDVYVPGCPPRPEAIIDGFMNIQKLVQ 158


>gi|297569884|ref|YP_003691228.1| NADH-quinone oxidoreductase, B subunit [Desulfurivibrio
           alkaliphilus AHT2]
 gi|296925799|gb|ADH86609.1| NADH-quinone oxidoreductase, B subunit [Desulfurivibrio
           alkaliphilus AHT2]
          Length = 177

 Score =  142 bits (358), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 66/122 (54%), Positives = 90/122 (73%), Gaps = 3/122 (2%)

Query: 43  VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGT 101
           +D+L+   R  SL  MTFGLACCA+EMM     R+DL+RFG    R +P+QSDVMIVAGT
Sbjct: 25  LDKLLNLGRANSLWPMTFGLACCAIEMMATGASRFDLDRFGAGVFRPAPKQSDVMIVAGT 84

Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS--YSVVRGCDRIVPVDIYVPGC 159
           ++ KMA A+  +Y+QMP P++VI+MG+CA  GG + +   Y +V G D+I+PVD+Y+PGC
Sbjct: 85  ISKKMAPAIVTLYEQMPHPKWVIAMGNCAISGGPFVFEGQYGIVEGADKILPVDVYIPGC 144

Query: 160 PP 161
           PP
Sbjct: 145 PP 146


>gi|117619274|ref|YP_856317.1| NADH dehydrogenase subunit B [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|238065068|sp|A0KJ66|NUOB_AERHH RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|117560681|gb|ABK37629.1| NADH-quinone oxidoreductase chain b [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 224

 Score =  142 bits (357), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 70/142 (49%), Positives = 94/142 (66%), Gaps = 2/142 (1%)

Query: 37  GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95
           G L   +   V W R  SL    FG++CC VEM  A    +D+ RFG    RASPRQ+D 
Sbjct: 40  GRLEEVLQDTVNWGRKNSLWPYNFGISCCYVEMCTAFTSPHDVARFGAEVIRASPRQADF 99

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
           M++AGT   KMA  ++R+Y+Q+ EP++VISMG+CAN GG Y   YSVV+G D+ +PVD+Y
Sbjct: 100 MVIAGTPFIKMAPVIQRLYEQLLEPKWVISMGACANSGGMYDI-YSVVQGVDKFLPVDVY 158

Query: 156 VPGCPPTAEALIYGILLLQKKI 177
           +PGCPP  EA +  ++LLQ  I
Sbjct: 159 IPGCPPRPEAFLQALMLLQDSI 180


>gi|116754357|ref|YP_843475.1| NADH-quinone oxidoreductase, B subunit [Methanosaeta thermophila
           PT]
 gi|116665808|gb|ABK14835.1| F420H2 dehydrogenase subunit B [Methanosaeta thermophila PT]
          Length = 190

 Score =  142 bits (357), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 60/155 (38%), Positives = 98/155 (63%)

Query: 25  DFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF 84
           D    ++E  H+   +  +  ++ W R  SL ++   + CC VEM+    P YD +RFG 
Sbjct: 29  DVWFTTTEKIHQIIQMGPIKNVLNWGRKNSLWFLMQPMGCCGVEMLVFGCPHYDCDRFGI 88

Query: 85  APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR 144
            PRA+PRQ+DVMI++G +T K   A++ +++QM EP++ I++G CA  GG ++ SY++++
Sbjct: 89  IPRATPRQADVMIISGYITRKYLPAIKNLWEQMLEPKWCIAVGECAISGGPFYDSYNIIQ 148

Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
                 P+D+YVPGCPP  E  I G + LQ+KI++
Sbjct: 149 NTSDFFPIDVYVPGCPPRPEQFIKGFVELQEKIKQ 183


>gi|332830189|gb|EGK02817.1| NADH-quinone oxidoreductase subunit B [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 183

 Score =  141 bits (356), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 64/147 (43%), Positives = 99/147 (67%), Gaps = 2/147 (1%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA-SPRQ 92
           T  GF  T  D ++  AR  SL  + F  +CC +E M      YD+ RFG    + SPRQ
Sbjct: 17  TGHGFFATKFDYVIGLARANSLWPLPFATSCCGIEFMATMASTYDMGRFGAERNSFSPRQ 76

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           +D+++V GT++ KMA  LR VY+QM EP++VI++G+CA+ GG +  +YSV++G D+++PV
Sbjct: 77  ADMLLVMGTISKKMAPILRHVYEQMAEPKWVIAVGACASSGGIFD-TYSVLQGIDKVIPV 135

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179
           D+YVPGCPP  E ++ G++ LQ+ ++ 
Sbjct: 136 DVYVPGCPPRPEQILDGVMQLQELVKH 162


>gi|255037834|ref|YP_003088455.1| NADH dehydrogenase subunit B [Dyadobacter fermentans DSM 18053]
 gi|254950590|gb|ACT95290.1| NADH-quinone oxidoreductase, B subunit [Dyadobacter fermentans DSM
           18053]
          Length = 180

 Score =  141 bits (355), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 68/149 (45%), Positives = 101/149 (67%), Gaps = 7/149 (4%)

Query: 37  GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQSDV 95
           GF  TS D+ +  AR+ SL  + F  +CC +E M      YD+ RFG   P  SPRQ+D+
Sbjct: 17  GFFATSFDEAIGLARSYSLWPLPFATSCCGIEFMATMGAHYDISRFGSERPSFSPRQADL 76

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
           ++V GT+  KMA  +++VY QM EPR+V+++G+CA+ GG +  +YSV++G DRI+PVD+Y
Sbjct: 77  LMVMGTIAKKMAPVVKQVYLQMAEPRWVMAVGACASSGGIFD-TYSVLQGIDRIIPVDVY 135

Query: 156 VPGCPPTAEALIYGILLLQ-----KKIRR 179
           VPGCPP  E +I G++ +Q     +K+RR
Sbjct: 136 VPGCPPRPEQIIDGLMQIQYLAQNEKLRR 164


>gi|167045512|gb|ABZ10165.1| putative NADH ubiquinone oxidoreductase, 20 Kd subunit [uncultured
           marine microorganism HF4000_APKG10H11]
          Length = 182

 Score =  141 bits (355), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 65/142 (45%), Positives = 93/142 (65%)

Query: 40  VTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVA 99
           V  V +L+TW R  SL  +     CC+ E    +   YD+ERFG    A+ RQ D++I+ 
Sbjct: 31  VPLVKKLITWGRKNSLWVVHLTTGCCSPEFAALAGAGYDMERFGPLVMAAMRQCDILIIE 90

Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGC 159
           G + +KMA  ++R YDQMP+P+YVI++G+CA  GG+Y  SYS+V G D+I+PVD+YVPGC
Sbjct: 91  GQVADKMAEVVKRTYDQMPDPKYVIAVGNCAISGGFYWDSYSMVMGIDKIIPVDVYVPGC 150

Query: 160 PPTAEALIYGILLLQKKIRRVG 181
           PP  E  I  I L+Q ++ + G
Sbjct: 151 PPRPEDWIDAIRLVQTRMDKEG 172


>gi|332883543|gb|EGK03826.1| NADH-quinone oxidoreductase subunit B [Dysgonomonas mossii DSM
           22836]
          Length = 183

 Score =  140 bits (353), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 63/144 (43%), Positives = 98/144 (68%), Gaps = 2/144 (1%)

Query: 37  GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA-SPRQSDV 95
           GF  T  D ++  AR  SL  + F  +CC +E M      YD+ RFG    + SPRQ+D+
Sbjct: 20  GFFATKFDYVIGLARANSLWPLPFATSCCGIEFMATMAATYDMGRFGAERNSFSPRQADM 79

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
           ++V GT++ KMA  LR VY+QM EP++VI++G+CA+ GG +  +YSV++G D+++PVD+Y
Sbjct: 80  LMVMGTISKKMAPILRHVYEQMAEPKWVIAVGACASSGGIFD-TYSVLQGIDKVIPVDVY 138

Query: 156 VPGCPPTAEALIYGILLLQKKIRR 179
           VPGCPP  E ++ G++ LQ+ ++ 
Sbjct: 139 VPGCPPRPEQILDGVMQLQELVKH 162


>gi|313206215|ref|YP_004045392.1| NADH dehydrogenase subunit b [Riemerella anatipestifer DSM 15868]
 gi|312445531|gb|ADQ81886.1| NADH dehydrogenase subunit B [Riemerella anatipestifer DSM 15868]
 gi|315023100|gb|EFT36113.1| NADH dehydrogenase subunit B [Riemerella anatipestifer RA-YM]
 gi|325336338|gb|ADZ12612.1| NADH:ubiquinone oxidoreductase 20 kD subunit related Fe-S
           oxidoreductases [Riemerella anatipestifer RA-GD]
          Length = 184

 Score =  140 bits (353), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 65/143 (45%), Positives = 100/143 (69%), Gaps = 4/143 (2%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS--PR 91
           + +GF  T +  L+  AR+ SL  + F  +CC +E M  +MP YD+ RFG A R S  PR
Sbjct: 18  SGEGFFATKLSSLIGMARSYSLWPLPFATSCCGIEFMAMAMPTYDMARFG-AERMSFSPR 76

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
           Q+D ++V GT++ K+A  L++VY QM EP++VI++G+CA+ GG +  +YSV++G D+I+P
Sbjct: 77  QADCLLVCGTISKKLAPVLKQVYSQMAEPKWVIAVGACASSGGIFD-TYSVLQGIDKIIP 135

Query: 152 VDIYVPGCPPTAEALIYGILLLQ 174
           VD+YVPGCPP  E ++ G + +Q
Sbjct: 136 VDVYVPGCPPRPEQILEGFMQVQ 158


>gi|297303011|ref|XP_002806097.1| PREDICTED: NADH-quinone oxidoreductase subunit B-like, partial
           [Macaca mulatta]
          Length = 170

 Score =  140 bits (353), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 70/126 (55%), Positives = 90/126 (71%), Gaps = 2/126 (1%)

Query: 53  GSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALR 111
            SL    FGL+CC VEM  A    +D+ RFG    RASPRQ+D M++AGT   KMA  ++
Sbjct: 2   NSLWPYNFGLSCCYVEMTTAFTAPHDIARFGAEVIRASPRQADFMVIAGTCFIKMAPIIQ 61

Query: 112 RVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171
           R+Y+QM EP++VISMGSCAN GG Y   YSVV+G D+ +PVD+YVPGCPP  EA + G++
Sbjct: 62  RLYEQMLEPKWVISMGSCANSGGMYDI-YSVVQGVDKFLPVDVYVPGCPPRPEAFLQGLM 120

Query: 172 LLQKKI 177
           LLQ+ I
Sbjct: 121 LLQESI 126


>gi|312183553|gb|ADQ42346.1| NADH:ubiquinone oxidoreductase B [Methanosaeta harundinacea]
          Length = 190

 Score =  140 bits (352), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 57/156 (36%), Positives = 98/156 (62%)

Query: 24  ADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFG 83
            D    ++E  H+   +  +  ++ W R  SL ++   + CC VEM+    P YD +RFG
Sbjct: 28  TDVWFTTTEKIHEIIDMGPIKNVLNWGRKNSLWFLMQPMGCCGVEMLVFGCPHYDCDRFG 87

Query: 84  FAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVV 143
             PRA+PRQ DVMI++G +T K   A++ +++++PEP++V+++G CA  GG ++ SY+++
Sbjct: 88  IFPRATPRQVDVMIISGYITRKYLPAIKNLWEEIPEPKWVMAIGECAISGGPFYDSYNII 147

Query: 144 RGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
               +  P+D+++PGCPP  E  I G   LQ+KI++
Sbjct: 148 NDTSKFFPIDVFIPGCPPRPEKFIEGFRGLQEKIKQ 183


>gi|153948912|ref|YP_001400434.1| NADH dehydrogenase subunit B [Yersinia pseudotuberculosis IP 31758]
 gi|238065223|sp|A7FGQ6|NUOB_YERP3 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|152960407|gb|ABS47868.1| NADH-quinone oxidoreductase, B subunit [Yersinia pseudotuberculosis
           IP 31758]
          Length = 227

 Score =  139 bits (350), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 68/132 (51%), Positives = 91/132 (68%), Gaps = 2/132 (1%)

Query: 37  GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95
           G L  ++  +V W R  SL    FGL+CC VEM+ +    +D+ RFG    RASPRQ+D 
Sbjct: 41  GKLENAMHDMVNWGRKNSLWPYNFGLSCCYVEMVTSFTAVHDVARFGAEVLRASPRQADF 100

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
           M+VAGT   KMA  ++R+Y+QM EP++VISMG+CAN GG Y   YSVV+G D+ +PVD+Y
Sbjct: 101 MVVAGTCFTKMAPVIQRLYEQMLEPKWVISMGACANSGGMYDI-YSVVQGVDKFLPVDVY 159

Query: 156 VPGCPPTAEALI 167
           +PGCPP  EA +
Sbjct: 160 IPGCPPRPEAYM 171


>gi|256425967|ref|YP_003126620.1| NADH dehydrogenase subunit B [Chitinophaga pinensis DSM 2588]
 gi|256040875|gb|ACU64419.1| NADH-quinone oxidoreductase, B subunit [Chitinophaga pinensis DSM
           2588]
          Length = 187

 Score =  139 bits (350), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 64/143 (44%), Positives = 98/143 (68%), Gaps = 2/143 (1%)

Query: 36  KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA-SPRQSD 94
           +GF  T+ DQ++  AR  S+  + F  +CC +E M      YD+ RFG    A +PRQ D
Sbjct: 23  EGFFATTFDQVIGLARKNSIWPLPFATSCCGIEFMATMASTYDMSRFGSERMAFTPRQCD 82

Query: 95  VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154
           +++V GT++ KMA  LR+VY QM EPR+V+++G+CA+ GG +  +YSV++G D+++PVD+
Sbjct: 83  LLMVMGTISKKMAPVLRQVYLQMAEPRWVVAVGACASSGGVFD-TYSVLQGIDQVIPVDV 141

Query: 155 YVPGCPPTAEALIYGILLLQKKI 177
           YVPGCPP  EA+I G + +Q  +
Sbjct: 142 YVPGCPPRPEAIIDGFMRVQDLV 164


>gi|255513406|gb|EET89672.1| NADH-quinone oxidoreductase, B subunit [Candidatus Micrarchaeum
           acidiphilum ARMAN-2]
          Length = 206

 Score =  139 bits (350), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 62/133 (46%), Positives = 91/133 (68%), Gaps = 1/133 (0%)

Query: 46  LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTN 104
           +V W+R+ S+  M FGLACCA+E+M     R D ER G+   R +PRQ DVMIVAG +T 
Sbjct: 50  VVKWSRSNSMWPMLFGLACCAIELMDFGAARIDAERKGYLLFRGTPRQCDVMIVAGWVTK 109

Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164
            M   ++R+Y+QM  P+YV++ G CA  GG ++ SY++V+G D+++PVD+Y  GCPP  E
Sbjct: 110 SMVPRVKRLYEQMASPKYVVAYGECATAGGPWYESYNIVKGIDQVLPVDVYAIGCPPKPE 169

Query: 165 ALIYGILLLQKKI 177
            L   ++ LQ+K+
Sbjct: 170 NLFAALMKLQEKV 182


>gi|119188401|ref|XP_001244807.1| hypothetical protein CIMG_04248 [Coccidioides immitis RS]
          Length = 84

 Score =  139 bits (350), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 63/74 (85%), Positives = 69/74 (93%)

Query: 106 MASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEA 165
           MA ALR+VYDQMP+PR+VISMGSCANGGGYYHYSYSV RGCDRIVPVDIYVPGCPPT+EA
Sbjct: 1   MAPALRQVYDQMPDPRWVISMGSCANGGGYYHYSYSVTRGCDRIVPVDIYVPGCPPTSEA 60

Query: 166 LIYGILLLQKKIRR 179
           L+YGI  LQKK+R 
Sbjct: 61  LMYGIFQLQKKMRH 74


>gi|327403945|ref|YP_004344783.1| NADH dehydrogenase subunit B [Fluviicola taffensis DSM 16823]
 gi|327319453|gb|AEA43945.1| NADH dehydrogenase subunit B [Fluviicola taffensis DSM 16823]
          Length = 182

 Score =  139 bits (350), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 63/147 (42%), Positives = 103/147 (70%), Gaps = 2/147 (1%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA-SPR 91
           I  +GF +T +D+++  AR  S+  + F  +CC +E M      YD+ RFG    + SPR
Sbjct: 13  INGEGFQLTLLDKVIGAARANSVWPLPFATSCCGIEYMGTMGSNYDVARFGMERMSFSPR 72

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
           Q+D++IVAGT++ K+A  L++VY+QM EP++V+S+G+CA+ GG +  +YSV++G DR++P
Sbjct: 73  QADLLIVAGTISKKLAPILKQVYEQMAEPKWVLSVGACASSGGIFD-TYSVLQGIDRVIP 131

Query: 152 VDIYVPGCPPTAEALIYGILLLQKKIR 178
           VD+YVPGCPP  E +I G + + + ++
Sbjct: 132 VDVYVPGCPPRPEQIIEGCMNIHRLVK 158


>gi|330834139|ref|YP_004408867.1| NADH-quinone oxidoreductase, B subunit [Metallosphaera cuprina
           Ar-4]
 gi|329566278|gb|AEB94383.1| NADH-quinone oxidoreductase, B subunit [Metallosphaera cuprina
           Ar-4]
          Length = 170

 Score =  138 bits (348), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 68/142 (47%), Positives = 90/142 (63%)

Query: 43  VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL 102
           +  L  W  + SL    F  +CC  E    +  R+D ERFG  P AS RQS+++ + GTL
Sbjct: 28  IRTLRDWGISFSLWPPHFTTSCCGTEFGAFAAARFDAERFGMLPFASSRQSNILTIEGTL 87

Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162
           T KMA A R VYDQMPEP+YVI+MG+C   GG +  SY+ V   D  +PVD+Y+PGCP  
Sbjct: 88  TRKMARAARIVYDQMPEPKYVIAMGACILEGGIFWNSYNTVLPSDVGIPVDLYIPGCPIR 147

Query: 163 AEALIYGILLLQKKIRRVGNVK 184
            EA+  G+L+LQKKIR  G ++
Sbjct: 148 PEAIARGLLMLQKKIRSQGAIR 169


>gi|146304760|ref|YP_001192076.1| NADH-quinone oxidoreductase subunit B [Metallosphaera sedula DSM
           5348]
 gi|145703010|gb|ABP96152.1| NADH dehydrogenase subunit B [Metallosphaera sedula DSM 5348]
          Length = 170

 Score =  137 bits (346), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 68/142 (47%), Positives = 89/142 (62%)

Query: 43  VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL 102
           V  L  W    SL    F  +CC  E    +  R+D ERFG  P AS RQS+++ + GTL
Sbjct: 28  VKTLRDWGIAFSLWPPHFTTSCCGTEFGAFAAARFDAERFGMLPFASSRQSNILTIEGTL 87

Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162
           T KMA A R VYDQMPEP+YVI++G+C   GG +  SY+ V   D  +PVD+Y+PGCP  
Sbjct: 88  TRKMARAARIVYDQMPEPKYVIALGACILEGGIFWNSYNTVLPSDVGIPVDLYLPGCPTR 147

Query: 163 AEALIYGILLLQKKIRRVGNVK 184
            EA+  G+L+LQKKIR  G ++
Sbjct: 148 PEAIARGLLMLQKKIRTQGAIR 169


>gi|255533962|ref|YP_003094334.1| NADH dehydrogenase subunit B [Pedobacter heparinus DSM 2366]
 gi|255346946|gb|ACU06272.1| NADH-quinone oxidoreductase, B subunit [Pedobacter heparinus DSM
           2366]
          Length = 180

 Score =  137 bits (345), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 65/148 (43%), Positives = 99/148 (66%), Gaps = 2/148 (1%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA-SPR 91
           I   GF  TS+D+++  AR+ SL  + F  +CC +E M      YD  RFG    + SPR
Sbjct: 13  IEGSGFFATSLDKVIGLARSHSLWPLPFATSCCGIEFMATMGSHYDFGRFGSERLSFSPR 72

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
           Q+D+++V GT+  KM+  L++VY QM EPR+V+++G+CA+ GG +  +YSV++G D I+P
Sbjct: 73  QADLLMVMGTIAKKMSPVLKQVYLQMAEPRWVMAVGACASSGGIFD-TYSVLQGIDEIIP 131

Query: 152 VDIYVPGCPPTAEALIYGILLLQKKIRR 179
           VD+YVPGCPP  EA++ G   +Q+ +R 
Sbjct: 132 VDVYVPGCPPRPEAILDGFGKIQELVRN 159


>gi|253729561|ref|YP_003029744.1| NdhK [Bambusa oldhamii]
 gi|246367071|gb|ACS94682.1| NdhK [Bambusa oldhamii]
          Length = 253

 Score =  137 bits (345), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 61/149 (40%), Positives = 94/149 (63%), Gaps = 1/149 (0%)

Query: 32  EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPR 91
           + +      T+ +    W++  SL  + +G +CC +E       R+D +R+G+ P++SPR
Sbjct: 39  QTSSNSVFSTTPNDFSNWSKLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGWVPKSSPR 98

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIV 150
           Q+++++ AG  T KMA +L R Y Q PEP+YVI+ G+C   GG +   SYS VRG D++ 
Sbjct: 99  QANLILTAGPETMKMAPSLVRFYKQRPEPKYVIARGACTITGGMFSTDSYSTVRGVDKLN 158

Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           PVD+Y+PGCPP  EA+I  +  L+KKI R
Sbjct: 159 PVDVYLPGCPPKPEAVIDALTKLRKKISR 187


>gi|325954435|ref|YP_004238095.1| NAD(P)H-quinone oxidoreductase subunit K [Weeksella virosa DSM
           16922]
 gi|323437053|gb|ADX67517.1| NAD(P)H-quinone oxidoreductase subunit K [Weeksella virosa DSM
           16922]
          Length = 191

 Score =  136 bits (343), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 63/144 (43%), Positives = 98/144 (68%), Gaps = 2/144 (1%)

Query: 36  KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA-SPRQSD 94
           +GF+   + ++V  AR  S+  + F  +CC +E M     +YDL RFG    A +PRQ D
Sbjct: 27  EGFMAMQLSKVVGLARKNSIWPLPFATSCCGIEFMATMGSKYDLARFGSERLAFTPRQCD 86

Query: 95  VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154
           +++V GT++ KMA  L++VY QM EPR+VI++G+CA+ GG +  +YSV++G D ++PVD+
Sbjct: 87  LLMVMGTISKKMAPVLKQVYIQMAEPRWVIAVGACASSGGIFD-TYSVLQGIDEVIPVDV 145

Query: 155 YVPGCPPTAEALIYGILLLQKKIR 178
           YVPGCPP  E +I G++ +Q+ I 
Sbjct: 146 YVPGCPPRPEGIIEGVMRIQELIE 169


>gi|255318317|ref|ZP_05359552.1| NADH-quinone oxidoreductase, B subunit [Acinetobacter
           radioresistens SK82]
 gi|262379061|ref|ZP_06072217.1| trifunctional NADH dehydrogenase I subunit B/C/D [Acinetobacter
           radioresistens SH164]
 gi|255304629|gb|EET83811.1| NADH-quinone oxidoreductase, B subunit [Acinetobacter
           radioresistens SK82]
 gi|262298518|gb|EEY86431.1| trifunctional NADH dehydrogenase I subunit B/C/D [Acinetobacter
           radioresistens SH164]
          Length = 225

 Score =  136 bits (343), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 70/140 (50%), Positives = 90/140 (64%), Gaps = 5/140 (3%)

Query: 29  ISSEITHKGFLVTSVDQL---VTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA 85
           + SE+    F+    D L   V W R  S+    FG +CC VE        +D+ RFG  
Sbjct: 27  LESEVNKNVFMTRLEDVLHTAVNWGRKNSIWPFNFGTSCCYVEYATTLTGVHDMSRFGAE 86

Query: 86  P-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR 144
             RASPRQ+D+MIVAGT   KMA  ++R+Y+QM EP++VISMG+CAN GG Y   YSVV+
Sbjct: 87  VIRASPRQADLMIVAGTCFTKMAPVIQRLYEQMLEPKWVISMGACANSGGMYDI-YSVVQ 145

Query: 145 GCDRIVPVDIYVPGCPPTAE 164
           G D+I+PVD+YVPGCPP  E
Sbjct: 146 GVDKIIPVDVYVPGCPPRPE 165


>gi|14325377|dbj|BAB60281.1| NADH dehydrogenase I chain B [Thermoplasma volcanium GSS1]
          Length = 116

 Score =  135 bits (341), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 67/111 (60%), Positives = 81/111 (72%), Gaps = 1/111 (0%)

Query: 69  MMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMG 127
           MM       D+ RFG    R SPRQSD+MIV+GT+T KMA  +RR+YD+MP P+YVI+ G
Sbjct: 1   MMAIQASDMDISRFGSEIFRNSPRQSDLMIVSGTVTKKMAPRVRRIYDEMPYPKYVIAQG 60

Query: 128 SCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
            C   GG Y+  YSVV G D++VPVD+YVPGCPPT EAL  GI+LLQKKIR
Sbjct: 61  VCVIQGGPYNQGYSVVLGVDKVVPVDVYVPGCPPTPEALTNGIILLQKKIR 111


>gi|255535796|ref|YP_003096167.1| NADH dehydrogenase subunit B [Flavobacteriaceae bacterium 3519-10]
 gi|255341992|gb|ACU08105.1| NADH-ubiquinone oxidoreductase chain B [Flavobacteriaceae bacterium
           3519-10]
          Length = 185

 Score =  135 bits (340), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 64/150 (42%), Positives = 99/150 (66%), Gaps = 7/150 (4%)

Query: 36  KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA-SPRQSD 94
           +GF  T +  ++  AR  SL  + F  +CC +E M    P YD  RFG    + SPRQ+D
Sbjct: 21  EGFFATKLSSVIGMARKYSLWPLPFATSCCGIEFMAVLNPTYDASRFGMERNSFSPRQAD 80

Query: 95  VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154
           +++V GT++ K+   L++VY QM EPR+V+++G+CA+ GG +  +YSV++G D+I+PVD+
Sbjct: 81  MLMVCGTISKKLGPVLKQVYTQMAEPRWVVAVGACASSGGIFD-TYSVLQGIDKIIPVDV 139

Query: 155 YVPGCPPTAEALIYGILLLQ-----KKIRR 179
           YVPGCPP  E +I G++ +Q     + IRR
Sbjct: 140 YVPGCPPRPEQIIEGVMQVQALCEGESIRR 169


>gi|300775173|ref|ZP_07085035.1| NADH-quinone oxidoreductase subunit B [Chryseobacterium gleum ATCC
           35910]
 gi|300505913|gb|EFK37049.1| NADH-quinone oxidoreductase subunit B [Chryseobacterium gleum ATCC
           35910]
          Length = 186

 Score =  135 bits (339), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 63/150 (42%), Positives = 98/150 (65%), Gaps = 7/150 (4%)

Query: 36  KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA-SPRQSD 94
           +GF  T +  ++  AR  SL  + F  +CC +E M    P YD  RFG    + SPRQ+D
Sbjct: 21  EGFFATKLSSVIGMARKFSLWPLPFATSCCGIEFMATLNPTYDASRFGMERNSFSPRQAD 80

Query: 95  VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154
           +++V GT++ K+   L+ VY QM EP++V+++G+CA+ GG +  +YSV++G D+I+PVD+
Sbjct: 81  MLMVCGTISKKLGPVLKEVYTQMAEPKWVVAVGACASSGGIFD-TYSVLQGIDKIIPVDV 139

Query: 155 YVPGCPPTAEALIYGILLLQ-----KKIRR 179
           YVPGCPP  E +I G++ +Q     + IRR
Sbjct: 140 YVPGCPPRPEQIIEGVMQVQALAESESIRR 169


>gi|302348182|ref|YP_003815820.1| NADH-quinone oxidoreductase subunit B subunit [Acidilobus
           saccharovorans 345-15]
 gi|302328594|gb|ADL18789.1| NADH-quinone oxidoreductase subunit B subunit [Acidilobus
           saccharovorans 345-15]
          Length = 210

 Score =  134 bits (338), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 63/154 (40%), Positives = 102/154 (66%), Gaps = 1/154 (0%)

Query: 28  RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
            +++++  +  +  ++ ++V WA   SL  +    +CC  E+  A  PR+D ER+G  P 
Sbjct: 24  EVAAQLAKESLIKGTIAKVVDWATAFSLWPVHLMTSCCGCEIGAAWGPRFDNERYGSLPW 83

Query: 88  ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCD 147
            SPRQ++++I+ GT+T KMA  +R  ++QMP P++VI+MG+C+  GG ++ SY++VR   
Sbjct: 84  VSPRQTNLIIIEGTVTKKMACTVRITWEQMPFPKFVIAMGACSLDGGIFYNSYNIVRPW- 142

Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
           ++VPVDIY+PGCPP  EA+   I+ LQK IR  G
Sbjct: 143 QVVPVDIYIPGCPPRPEAVARSIVELQKIIRSRG 176


>gi|224373442|ref|YP_002607814.1| NADH-ubiquinone oxidoreductase 20 kda subunit [Nautilia
           profundicola AmH]
 gi|223588944|gb|ACM92680.1| NADH-ubiquinone oxidoreductase 20 kda subunit [Nautilia
           profundicola AmH]
          Length = 157

 Score =  134 bits (337), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 61/138 (44%), Positives = 92/138 (66%)

Query: 42  SVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGT 101
            V     +AR+ S   + F   CC++EM+ A  PRYD ER+G+    +PRQ+D+M + G 
Sbjct: 3   KVLDFFNYARSKSPWIVHFCSGCCSLEMLAAMGPRYDWERYGYIMTPTPRQADIMFITGL 62

Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP 161
           ++ K+  AL R Y+QMPEPRYV+++G+CA  GG Y+ S SV++    I+P D++V GCPP
Sbjct: 63  VSKKILPALLRTYEQMPEPRYVVAIGACAYDGGPYNDSVSVIKNMTEILPADVFVAGCPP 122

Query: 162 TAEALIYGILLLQKKIRR 179
             EA+I G+  L++KI+R
Sbjct: 123 RPEAIIAGLEELKEKIKR 140


>gi|18313693|ref|NP_560360.1| NADH-ubiquinone oxidoreductase subunit [Pyrobaculum aerophilum str.
           IM2]
 gi|18161245|gb|AAL64542.1| NADH-ubiquinone oxidoreductase subunit [Pyrobaculum aerophilum str.
           IM2]
          Length = 190

 Score =  134 bits (337), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 62/137 (45%), Positives = 92/137 (67%), Gaps = 1/137 (0%)

Query: 42  SVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGT 101
            ++++  W    SL  +    +CC VE+   S P +D ER+G  P  + RQ++V+IV GT
Sbjct: 14  KLERVFKWGVRWSLWPVHLVTSCCGVEVAHTSAPGFDAERWGVLPFNTMRQTNVIIVEGT 73

Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP 161
           +T KMA  L++VY+QMPEP++V++MG+CA  GG +  SY VV+  D IVPVD+Y+ GCPP
Sbjct: 74  ITRKMAKVLKQVYEQMPEPKFVLAMGACAVRGGLFWNSYHVVQ-VDTIVPVDVYIAGCPP 132

Query: 162 TAEALIYGILLLQKKIR 178
           T EA+I   ++L  KI+
Sbjct: 133 TPEAVIRAFIMLHNKIK 149


>gi|170289764|ref|YP_001736580.1| F420H2 dehydrogenase subunit [Candidatus Korarchaeum cryptofilum
           OPF8]
 gi|170173844|gb|ACB06897.1| F420H2 dehydrogenase subunit [Candidatus Korarchaeum cryptofilum
           OPF8]
          Length = 174

 Score =  134 bits (336), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 64/136 (47%), Positives = 89/136 (65%), Gaps = 1/136 (0%)

Query: 49  WARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108
           W    SL  + F  ACC  E   ++ P+YD ER GF P    RQ +V+ + GTL+ KMA 
Sbjct: 37  WGIAFSLWPVHFTTACCGAEFAASAAPKYDAERLGFLPFIGIRQCNVLFIEGTLSKKMAE 96

Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168
           A   VY+QMPEP++VI MG+CA  GG +  SY++VR  D I+PV++++PGCPP  EA+  
Sbjct: 97  AAIWVYEQMPEPKFVIGMGACAIDGGIFWNSYNIVRPMD-ILPVNVFIPGCPPRPEAVAQ 155

Query: 169 GILLLQKKIRRVGNVK 184
            I++LQ+KIR+   VK
Sbjct: 156 AIIMLQRKIRKGELVK 171


>gi|15897574|ref|NP_342179.1| NADH dehydrogenase subunit B (NuoB) [Sulfolobus solfataricus P2]
 gi|284174895|ref|ZP_06388864.1| NADH dehydrogenase subunit B (NuoB) [Sulfolobus solfataricus 98/2]
 gi|6015810|emb|CAB57637.1| hypothetical protein [Sulfolobus solfataricus P2]
 gi|13813833|gb|AAK40969.1| NADH dehydrogenase subunit B (NuoB) [Sulfolobus solfataricus P2]
 gi|261602337|gb|ACX91940.1| NADH-quinone oxidoreductase, B subunit [Sulfolobus solfataricus
           98/2]
          Length = 170

 Score =  133 bits (335), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 64/142 (45%), Positives = 90/142 (63%)

Query: 43  VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL 102
           +  ++ W  + SL    F  +CC  E    +  R+D ER+G  P +S RQS+++I+ GTL
Sbjct: 28  IKSIIDWGISFSLWPPHFTTSCCGTEFGAFAAARFDAERYGMLPFSSARQSNILILEGTL 87

Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162
           + KM  A R VYDQMPEP+YVI++G+C   GG +  SY+ V   D  +PVD+YVPGCP  
Sbjct: 88  SRKMGRAARIVYDQMPEPKYVIALGACILEGGIFWNSYNTVLPSDIGIPVDLYVPGCPIR 147

Query: 163 AEALIYGILLLQKKIRRVGNVK 184
            EA+   +L+LQKKIR  G +K
Sbjct: 148 PEAVARAVLMLQKKIRTQGALK 169


>gi|237809381|ref|YP_002893821.1| NADH dehydrogenase subunit B [Tolumonas auensis DSM 9187]
 gi|259514690|sp|C4LB32|NUOB_TOLAT RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|237501642|gb|ACQ94235.1| NADH-quinone oxidoreductase, B subunit [Tolumonas auensis DSM 9187]
          Length = 223

 Score =  133 bits (334), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 65/129 (50%), Positives = 87/129 (67%), Gaps = 2/129 (1%)

Query: 37  GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95
           G L   ++  V W R  SL    FG++CC VEM  A    +D+ RFG    RASPRQ+D 
Sbjct: 39  GKLENVLNSTVNWGRKNSLWPYNFGISCCYVEMTTAFTAVHDVARFGAEVIRASPRQADF 98

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
           M++AGT   KMA  ++R+Y+Q+ EP++VISMG+CAN GG Y   YSVV+G D+ +PVD+Y
Sbjct: 99  MVIAGTPFIKMAPVIQRLYEQLLEPKWVISMGACANSGGMYDI-YSVVQGVDKFLPVDVY 157

Query: 156 VPGCPPTAE 164
           +PGCPP  E
Sbjct: 158 IPGCPPRPE 166


>gi|124027080|ref|YP_001012400.1| NAD(P)H-quinone oxidoreductase chain K [Hyperthermus butylicus DSM
           5456]
 gi|123977774|gb|ABM80055.1| NAD(P)H-quinone oxidoreductase chain K [Hyperthermus butylicus DSM
           5456]
          Length = 209

 Score =  133 bits (334), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 62/137 (45%), Positives = 91/137 (66%), Gaps = 1/137 (0%)

Query: 43  VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL 102
           +  L+ W  + SL  +    +CC  E      P+YD ER G  P   PR ++V++V GTL
Sbjct: 33  IKSLLDWGISFSLWPVHLTTSCCGAEFAAVYDPKYDSERLGSLPFTHPRNTNVLLVEGTL 92

Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162
           T KMA A R V++QMP P++VI+MG+CA  GG ++ SY++VR  ++I+PVD YVPGCPPT
Sbjct: 93  TRKMARAARLVWEQMPWPKFVIAMGACAITGGIFYNSYNIVR-VNQILPVDYYVPGCPPT 151

Query: 163 AEALIYGILLLQKKIRR 179
            EA+   ++ LQ+K+R+
Sbjct: 152 PEAVANALIKLQEKVRK 168


>gi|159041010|ref|YP_001540262.1| NADH-quinone oxidoreductase, B subunit [Caldivirga maquilingensis
           IC-167]
 gi|157919845|gb|ABW01272.1| NADH-quinone oxidoreductase, B subunit [Caldivirga maquilingensis
           IC-167]
          Length = 374

 Score =  133 bits (334), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 65/135 (48%), Positives = 86/135 (63%), Gaps = 1/135 (0%)

Query: 44  DQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLT 103
           D L +W    S+       ACC VE   AS P YD ER+GF P   PRQ++ +++ GT+T
Sbjct: 25  DSLASWGTKFSIWPAHLVTACCGVEFAHASAPGYDAERWGFLPIFGPRQTNSIVIEGTVT 84

Query: 104 NKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTA 163
            KMA  ++  Y+QMP P++VI+MGSCA  GG +  SY VVR  + IVPVD +V GCPPT 
Sbjct: 85  RKMARIVKTAYEQMPYPKFVIAMGSCAMEGGVFWNSYHVVR-VNEIVPVDAWVMGCPPTP 143

Query: 164 EALIYGILLLQKKIR 178
           EA+I  I ++Q KI 
Sbjct: 144 EAVIRAIRMVQSKIE 158


>gi|255961309|ref|YP_003097491.1| NADH dehydrogenase subunit K [Selaginella moellendorffii]
 gi|254941481|gb|ACT88996.1| NADH dehydrogenase subunit K [Selaginella moellendorffii]
          Length = 213

 Score =  132 bits (333), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 70/180 (38%), Positives = 100/180 (55%), Gaps = 12/180 (6%)

Query: 1   MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTF 60
           +G  TVN  +++     S ++   D             + T+++    WAR  S   + +
Sbjct: 14  IGNNTVNDLMVNPMGRPSGDRATPD-----------SIVPTTLNDSTNWARLSSSRPLPY 62

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           G +CC++E       R D +R G  PR+SPRQ+D+ I AGT T KMA +L R Y+QMPEP
Sbjct: 63  GTSCCSIEFAPLIGSRSDSDRHGSVPRSSPRQADLTITAGTATMKMAPSLVRSYEQMPEP 122

Query: 121 RYVISMGS-CANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           +Y I+MG+    GG      +S VRG D+ +P DIY PGCPP  EALI  I+  +KK+ R
Sbjct: 123 KYAIAMGARTVTGGMLSTDPHSTVRGVDKSIPADIYPPGCPPKPEALIDAIIKPRKKVSR 182


>gi|302824537|ref|XP_002993911.1| hypothetical protein SELMODRAFT_4550 [Selaginella moellendorffii]
 gi|302824543|ref|XP_002993914.1| hypothetical protein SELMODRAFT_4549 [Selaginella moellendorffii]
 gi|300138278|gb|EFJ05052.1| hypothetical protein SELMODRAFT_4550 [Selaginella moellendorffii]
 gi|300138281|gb|EFJ05055.1| hypothetical protein SELMODRAFT_4549 [Selaginella moellendorffii]
          Length = 209

 Score =  132 bits (333), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 70/180 (38%), Positives = 100/180 (55%), Gaps = 12/180 (6%)

Query: 1   MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTF 60
           +G  TVN  +++     S ++   D             + T+++    WAR  S   + +
Sbjct: 14  IGNNTVNDLMVNPMGRPSGDRATPD-----------SIVPTTLNDSTNWARLSSSRPLPY 62

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           G +CC++E       R D +R G  PR+SPRQ+D+ I AGT T KMA +L R Y+QMPEP
Sbjct: 63  GTSCCSIEFAPLIGSRSDSDRHGSVPRSSPRQADLTITAGTATMKMAPSLVRSYEQMPEP 122

Query: 121 RYVISMGS-CANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           +Y I+MG+    GG      +S VRG D+ +P DIY PGCPP  EALI  I+  +KK+ R
Sbjct: 123 KYAIAMGARTVTGGMLSTDPHSTVRGVDKSIPADIYPPGCPPKPEALIDAIIKPRKKVSR 182


>gi|327311105|ref|YP_004338002.1| NADH-quinone oxidoreductase subunit B [Thermoproteus uzoniensis
           768-20]
 gi|326947584|gb|AEA12690.1| NADH-quinone oxidoreductase subunit B [Thermoproteus uzoniensis
           768-20]
          Length = 202

 Score =  132 bits (333), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 62/136 (45%), Positives = 90/136 (66%), Gaps = 1/136 (0%)

Query: 42  SVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGT 101
            +D+++ W    S+  +    +CC VE+   S P +D ER+G  P  + RQ++V++V GT
Sbjct: 16  KLDRIIRWGIKWSMWPVHLVTSCCGVEVAHTSAPVFDAERWGVLPFNTMRQTNVILVEGT 75

Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP 161
           +T KMA  L+ VY+QMPEP++VI+MG+CA  GG +  SY VV+  D IVPVD Y+PGCPP
Sbjct: 76  ITRKMAKVLKWVYEQMPEPKFVIAMGACAVRGGLFWNSYHVVQ-VDTIVPVDAYIPGCPP 134

Query: 162 TAEALIYGILLLQKKI 177
           T EA+I    ++  KI
Sbjct: 135 TPEAVIRAFFMVGNKI 150


>gi|330508771|ref|YP_004385199.1| F420H2 dehydrogenase subunit B [Methanosaeta concilii GP-6]
 gi|328929579|gb|AEB69381.1| F420H2 dehydrogenase, subunit B [Methanosaeta concilii GP-6]
          Length = 190

 Score =  132 bits (333), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 54/155 (34%), Positives = 95/155 (61%)

Query: 30  SSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS 89
           ++E  H+   +  +  +  W R  S+ ++   + CC VEM       YD +RFG  PR +
Sbjct: 34  TTEKIHEIIQMGPIKNIFNWGRKNSVYFLMQPMGCCGVEMFVFGAAPYDSDRFGCIPRNT 93

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQ+DVMI++G LT K     + +++ MPEP++ I++G CA  GG ++ SY++++     
Sbjct: 94  PRQTDVMIISGYLTRKYLPVFKNLWENMPEPKWCIAIGECAISGGPFYDSYNIIQNTGDY 153

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
            P+D+Y+PGCPP  E  + G++ LQ+KI++  +++
Sbjct: 154 FPIDVYIPGCPPRPEQFLEGLMNLQEKIKQRKDLR 188


>gi|296399240|gb|ADH10415.1| NADH-plastoquinone oxidoreductase subunit K [Selaginella
           moellendorffii]
          Length = 212

 Score =  132 bits (333), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 70/180 (38%), Positives = 100/180 (55%), Gaps = 12/180 (6%)

Query: 1   MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTF 60
           +G  TVN  +++     S ++   D             + T+++    WAR  S   + +
Sbjct: 14  IGNNTVNDLMVNPMGRPSGDRATPD-----------SIVPTTLNDSTNWARLSSSRPLPY 62

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           G +CC++E       R D +R G  PR+SPRQ+D+ I AGT T KMA +L R Y+QMPEP
Sbjct: 63  GTSCCSIEFAPLIGSRSDSDRHGSVPRSSPRQADLTITAGTATMKMAPSLVRSYEQMPEP 122

Query: 121 RYVISMGS-CANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           +Y I+MG+    GG      +S VRG D+ +P DIY PGCPP  EALI  I+  +KK+ R
Sbjct: 123 KYAIAMGARTVTGGMLSTDPHSTVRGVDKSIPADIYPPGCPPKPEALIDAIIKPRKKVSR 182


>gi|218670928|ref|ZP_03520599.1| NuoB2 NADH I chain B [Rhizobium etli GR56]
          Length = 117

 Score =  132 bits (332), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 61/106 (57%), Positives = 82/106 (77%), Gaps = 1/106 (0%)

Query: 39  LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIV 98
           L T+ D +++W+R  +L   TFG+ACCA+EM+ A   RYDL+RFG   R SPRQSDVMI+
Sbjct: 13  LFTTADSIISWSRRSALWPETFGIACCAIEMISAGCARYDLDRFGVVFRPSPRQSDVMII 72

Query: 99  AGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR 144
           AGT+T K A  +RR+YDQMPEPR+VI+MG+CA  GG Y+ +Y+VV+
Sbjct: 73  AGTVTRKFAPVVRRLYDQMPEPRWVIAMGTCAISGGVYN-TYAVVQ 117


>gi|171186232|ref|YP_001795151.1| NADH-quinone oxidoreductase, B subunit [Thermoproteus neutrophilus
           V24Sta]
 gi|170935444|gb|ACB40705.1| NADH-quinone oxidoreductase, B subunit [Thermoproteus neutrophilus
           V24Sta]
          Length = 182

 Score =  132 bits (332), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 62/137 (45%), Positives = 91/137 (66%), Gaps = 1/137 (0%)

Query: 42  SVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGT 101
            +++L  W    SL  +    +CC VE+   S P +D ER+G  P  + RQS+V++V GT
Sbjct: 14  KLEKLFKWGVRWSLWPVHLVTSCCGVEVAHTSGPGFDAERWGVLPFHTMRQSNVILVEGT 73

Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP 161
           +T KMA  L+ VY+QMPEP+YV++MG+CA  GG +  SY VV+  D ++PVD+Y+ GCPP
Sbjct: 74  ITRKMARVLKMVYEQMPEPKYVLAMGACAVRGGLFWNSYHVVQ-VDTVLPVDVYIAGCPP 132

Query: 162 TAEALIYGILLLQKKIR 178
           T EA+I   ++L  KI+
Sbjct: 133 TPEAVIRAFMMLHNKIK 149


>gi|149195032|ref|ZP_01872124.1| proton-translocating NADH-quinone oxidoreductase, B subunit
           [Caminibacter mediatlanticus TB-2]
 gi|149134745|gb|EDM23229.1| proton-translocating NADH-quinone oxidoreductase, B subunit
           [Caminibacter mediatlanticus TB-2]
          Length = 157

 Score =  132 bits (331), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 59/138 (42%), Positives = 92/138 (66%)

Query: 42  SVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGT 101
            V     +AR+ S   + F   CC++EM+ A  PRYD ER+G+    +PRQ+D++ + G 
Sbjct: 3   KVLDFFNYARSKSPWIVHFCSGCCSLEMLAAMGPRYDWERYGYMMTPTPRQADIIFITGL 62

Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP 161
           ++ K+  AL R Y+QMPEPRYV+++G+CA  GG Y+ S SV++    I+P D++V GCPP
Sbjct: 63  VSKKILPALLRTYEQMPEPRYVVAIGACAYDGGPYNDSPSVIKNMTEILPADVFVAGCPP 122

Query: 162 TAEALIYGILLLQKKIRR 179
             EA++ G+  L++KI+R
Sbjct: 123 KPEAIVAGLEELKEKIKR 140


>gi|70607377|ref|YP_256247.1| NADH:ubiquinone oxidoreductase, B subunit [Sulfolobus
           acidocaldarius DSM 639]
 gi|68568025|gb|AAY80954.1| NADH:ubiquinone oxidoreductase, B subunit [Sulfolobus
           acidocaldarius DSM 639]
          Length = 171

 Score =  132 bits (331), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 63/157 (40%), Positives = 92/157 (58%)

Query: 22  VDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLER 81
           +  +   +S ++ +       +  L  W  + SL       +CC  E    +  R+D ER
Sbjct: 7   LTGNLEEVSKKVVNWLLNRKPIKSLKDWGTSFSLWPPHLTTSCCGTEFGAFAAARFDAER 66

Query: 82  FGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYS 141
           +G  P +S RQ++++++ GTLT KM  A + VYDQMPEP++VI+MG+CA  GG +  SY+
Sbjct: 67  YGVLPFSSARQTNLLVIEGTLTRKMGRAAKIVYDQMPEPKFVIAMGACALEGGIFWNSYN 126

Query: 142 VVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
            V   D  +PVDIY PGCP   EAL   +LLLQK+IR
Sbjct: 127 TVLPSDLGIPVDIYAPGCPTRPEALARAVLLLQKRIR 163


>gi|126464931|ref|YP_001040040.1| NADH-quinone oxidoreductase, B subunit [Staphylothermus marinus F1]
 gi|126013754|gb|ABN69132.1| NADH-quinone oxidoreductase, B subunit [Staphylothermus marinus F1]
          Length = 165

 Score =  131 bits (329), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 55/114 (48%), Positives = 83/114 (72%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E++ A  P YD ERFG     S R +D+++V G +T K A  L+R+Y+QMP+P++V+
Sbjct: 44  CDIEVLAAITPLYDPERFGIKLAPSIRHADILVVTGAVTKKAAERLKRLYEQMPDPKFVV 103

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           ++G+CA  GG +H SYSV+ G D+++PVDIYVPGCPP  EA++ GI+ L K++ 
Sbjct: 104 AVGACAISGGVFHNSYSVLAGTDKVIPVDIYVPGCPPRPEAILDGIVKLLKRLE 157


>gi|15921820|ref|NP_377489.1| NADH-ubiquinone oxidoreductase subunit K [Sulfolobus tokodaii str.
           7]
 gi|15622607|dbj|BAB66598.1| 173aa long hypothetical NADH-ubiquinone oxidoreductase subunit K
           [Sulfolobus tokodaii str. 7]
          Length = 173

 Score =  131 bits (329), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 63/142 (44%), Positives = 88/142 (61%)

Query: 43  VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL 102
           +  L+ W  + SL       +CC  E    +  R+D ERFG  P +S RQ++++++ GTL
Sbjct: 28  IKNLIDWGISFSLWPPHLTTSCCGTEFGAFAAARFDAERFGVLPFSSARQTNLLVIEGTL 87

Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162
           T KMA A + VYDQMPEP++VI+MG+C+  GG +  SY+ V   +  +PVDIY PGCP  
Sbjct: 88  TRKMARAAKIVYDQMPEPKWVIAMGACSLEGGIFWNSYNTVLPSEIGIPVDIYAPGCPTR 147

Query: 163 AEALIYGILLLQKKIRRVGNVK 184
            EAL   I+ LQK+IR    VK
Sbjct: 148 PEALARAIITLQKRIRSNQTVK 169


>gi|229579262|ref|YP_002837660.1| NADH-quinone oxidoreductase, B subunit [Sulfolobus islandicus
           Y.G.57.14]
 gi|229581977|ref|YP_002840376.1| NADH-quinone oxidoreductase, B subunit [Sulfolobus islandicus
           Y.N.15.51]
 gi|228009976|gb|ACP45738.1| NADH-quinone oxidoreductase, B subunit [Sulfolobus islandicus
           Y.G.57.14]
 gi|228012693|gb|ACP48454.1| NADH-quinone oxidoreductase, B subunit [Sulfolobus islandicus
           Y.N.15.51]
          Length = 170

 Score =  131 bits (329), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 62/139 (44%), Positives = 88/139 (63%)

Query: 43  VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL 102
           +  ++ W  + SL    F  +CC  E    +  R+D ER+G  P +S RQS+++I+ GTL
Sbjct: 28  IKSIIDWGISFSLWPPHFTTSCCGTEFGAFAAARFDAERYGMLPFSSARQSNILILEGTL 87

Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162
           + KM  A R VYDQMPEP++VI++G+C   GG +  SY+ V   D  +PVD+YVPGCP  
Sbjct: 88  SRKMGRAARIVYDQMPEPKFVIALGACILEGGIFWNSYNTVLPSDLGIPVDLYVPGCPIR 147

Query: 163 AEALIYGILLLQKKIRRVG 181
            EA+   +L+LQKKIR  G
Sbjct: 148 PEAVARAVLMLQKKIRTQG 166


>gi|227827741|ref|YP_002829521.1| NADH-quinone oxidoreductase subunit beta [Sulfolobus islandicus
           M.14.25]
 gi|227830450|ref|YP_002832230.1| NADH-quinone oxidoreductase, B subunit [Sulfolobus islandicus
           L.S.2.15]
 gi|229585012|ref|YP_002843514.1| NADH-quinone oxidoreductase, B subunit [Sulfolobus islandicus
           M.16.27]
 gi|238619913|ref|YP_002914739.1| NADH-quinone oxidoreductase, B subunit [Sulfolobus islandicus
           M.16.4]
 gi|284997944|ref|YP_003419711.1| NADH-quinone oxidoreductase, B subunit [Sulfolobus islandicus
           L.D.8.5]
 gi|227456898|gb|ACP35585.1| NADH-quinone oxidoreductase, B subunit [Sulfolobus islandicus
           L.S.2.15]
 gi|227459537|gb|ACP38223.1| NADH-quinone oxidoreductase, B subunit [Sulfolobus islandicus
           M.14.25]
 gi|228020062|gb|ACP55469.1| NADH-quinone oxidoreductase, B subunit [Sulfolobus islandicus
           M.16.27]
 gi|238380983|gb|ACR42071.1| NADH-quinone oxidoreductase, B subunit [Sulfolobus islandicus
           M.16.4]
 gi|284445839|gb|ADB87341.1| NADH-quinone oxidoreductase, B subunit [Sulfolobus islandicus
           L.D.8.5]
 gi|323474809|gb|ADX85415.1| NADH-quinone oxidoreductase, B subunit [Sulfolobus islandicus
           REY15A]
 gi|323477516|gb|ADX82754.1| NADH-quinone oxidoreductase, B subunit [Sulfolobus islandicus
           HVE10/4]
          Length = 170

 Score =  131 bits (329), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 62/139 (44%), Positives = 88/139 (63%)

Query: 43  VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL 102
           +  ++ W  + SL    F  +CC  E    +  R+D ER+G  P +S RQS+++I+ GTL
Sbjct: 28  IKSIIDWGISFSLWPPHFTTSCCGTEFGAFAAARFDAERYGMLPFSSARQSNILILEGTL 87

Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162
           + KM  A R VYDQMPEP++VI++G+C   GG +  SY+ V   D  +PVD+YVPGCP  
Sbjct: 88  SRKMGRAARIVYDQMPEPKFVIALGACILEGGIFWNSYNTVLPSDLGIPVDLYVPGCPIR 147

Query: 163 AEALIYGILLLQKKIRRVG 181
            EA+   +L+LQKKIR  G
Sbjct: 148 PEAVARAVLMLQKKIRTQG 166


>gi|118431453|ref|NP_147936.2| NuoB-like protein [Aeropyrum pernix K1]
 gi|116062777|dbj|BAA80425.2| NuoB homolog [Aeropyrum pernix K1]
          Length = 199

 Score =  131 bits (329), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 58/136 (42%), Positives = 92/136 (67%), Gaps = 1/136 (0%)

Query: 43  VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL 102
           +D++V WA + SL  +    +CC+ E      PR D E+FG  P   PRQ++++I+ GT+
Sbjct: 31  LDKMVDWATSFSLWPVHLTTSCCSTEFAATFAPRIDGEQFGALPWVGPRQTNLIIIEGTV 90

Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162
           T KMA A+R  ++QMP P++ I+MG+CA  GG ++ SY++V+   +++P+DIY+PGCPP 
Sbjct: 91  TKKMACAVRLTWEQMPHPKFAIAMGACALDGGLFYNSYNIVKPW-QVLPIDIYIPGCPPR 149

Query: 163 AEALIYGILLLQKKIR 178
            E +   I+ LQ+KIR
Sbjct: 150 PEGVARAIVELQRKIR 165


>gi|51245172|ref|YP_065056.1| NADH dehydrogenase, subunit 10 [Desulfotalea psychrophila LSv54]
 gi|50876209|emb|CAG36049.1| probable NADH dehydrogenase, subunit 10 [Desulfotalea psychrophila
           LSv54]
          Length = 128

 Score =  130 bits (328), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 63/112 (56%), Positives = 82/112 (73%), Gaps = 3/112 (2%)

Query: 69  MMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMG 127
           MM A   RYDL RFG    R S RQSDVMIVAGT++ KMA  ++ +YDQMPEP++VI+MG
Sbjct: 1   MMSAGCARYDLSRFGAEVFRPSARQSDVMIVAGTISKKMAEGIKTLYDQMPEPKWVIAMG 60

Query: 128 SCANGGGYYHYS--YSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
           +CA  GG + +   Y ++ G D+I+PVDIY+PGCPP  EALI GI+ L+ +I
Sbjct: 61  NCAISGGPFVFEGQYGIIEGADKILPVDIYIPGCPPRPEALIEGIIELEHQI 112


>gi|119871844|ref|YP_929851.1| NADH-quinone oxidoreductase, B subunit [Pyrobaculum islandicum DSM
           4184]
 gi|119673252|gb|ABL87508.1| NADH-quinone oxidoreductase, B subunit [Pyrobaculum islandicum DSM
           4184]
          Length = 147

 Score =  130 bits (326), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 63/142 (44%), Positives = 91/142 (64%), Gaps = 1/142 (0%)

Query: 36  KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDV 95
           +G +  +V ++  W    SL       ACC VE      P YD ERFG  P  S RQS++
Sbjct: 2   RGAISQAVSRVARWGTKWSLWPPHLVTACCGVEFAHTFGPAYDAERFGMLPIGSLRQSNI 61

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
           +I+ GT+T KMA  ++ +YDQMPEP+YVI+MG+CA  GG ++ SY +V    ++VPV++Y
Sbjct: 62  LILEGTITLKMAKFVKYIYDQMPEPKYVIAMGACAIKGGVFYGSYHMVPA-SKVVPVNVY 120

Query: 156 VPGCPPTAEALIYGILLLQKKI 177
           V GCPPT EA++  +  +QK+I
Sbjct: 121 VSGCPPTPEAVLKAVEKIQKQI 142


>gi|257053296|ref|YP_003131129.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Halorhabdus
           utahensis DSM 12940]
 gi|256692059|gb|ACV12396.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Halorhabdus
           utahensis DSM 12940]
          Length = 183

 Score =  130 bits (326), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 61/136 (44%), Positives = 90/136 (66%), Gaps = 5/136 (3%)

Query: 45  QLVTWARTGS--LMWMTFGLAC--CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAG 100
           +++ WAR  S  ++ M  G +C  C +E + A MPRYD+ERFG   + +PR +DV++  G
Sbjct: 3   RIIDWARNRSPWILHMNCG-SCNGCDIETLDALMPRYDVERFGIQQKDTPRHADVLVATG 61

Query: 101 TLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCP 160
            +T +MA  L R+Y+QMPEP+ VI+ GSCA  GG +   Y+   G D ++PVD+YVPGCP
Sbjct: 62  PVTKQMAPRLERIYEQMPEPKLVIAAGSCAATGGVFQDCYNCHEGIDDVIPVDMYVPGCP 121

Query: 161 PTAEALIYGILLLQKK 176
            + E LI GI+ L ++
Sbjct: 122 ISPETLIDGIVALLEE 137


>gi|12001974|gb|AAG43130.1|AF060512_1 My017 protein [Homo sapiens]
          Length = 214

 Score =  129 bits (325), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 75/156 (48%), Positives = 92/156 (58%), Gaps = 27/156 (17%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           ++V  +D LV WAR  SL  MTFGLACCAVEMM  + PRYD++RFG   RASPRQSDVMI
Sbjct: 62  YVVAKLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQSDVMI 121

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI--- 154
           VAGTLTNKMA ALR+     P P          + G      +  +R   R++P+ +   
Sbjct: 122 VAGTLTNKMAPALRK---SPPRP----------DAGAALRGLHGELRQRGRLLPLFLLGG 168

Query: 155 -----------YVPGCPPTAEALIYGILLLQKKIRR 179
                        P  P TAEAL+YGIL LQ+KI+R
Sbjct: 169 EGLRPHRARGHLHPRLPTTAEALLYGILQLQRKIKR 204


>gi|320161606|ref|YP_004174831.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit family protein
           [Anaerolinea thermophila UNI-1]
 gi|319995460|dbj|BAJ64231.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit family protein
           [Anaerolinea thermophila UNI-1]
          Length = 173

 Score =  129 bits (324), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 57/139 (41%), Positives = 88/139 (63%), Gaps = 3/139 (2%)

Query: 43  VDQLVTWARTGSLMWMTFGLACCA---VEMMQASMPRYDLERFGFAPRASPRQSDVMIVA 99
           +D++  WAR  S   + +    C    +E++    PRYDLERFG     SPR +DV+I  
Sbjct: 14  LDKVRLWARVNSPWAIHYNSGSCNGCDIEIVATLTPRYDLERFGVKLEGSPRHADVLICT 73

Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGC 159
           G +T +    L R+Y QMPEP++V+++GSC   GG +H  Y++  G D ++PVD+++PGC
Sbjct: 74  GPVTRQSRDRLLRIYHQMPEPKFVVAVGSCGLSGGVFHGLYNIAGGIDEVLPVDVFIPGC 133

Query: 160 PPTAEALIYGILLLQKKIR 178
           PP  EA+IYG++ L + +R
Sbjct: 134 PPRPEAIIYGLVQLLEGLR 152


>gi|224087817|ref|XP_002194923.1| PREDICTED: similar to NADH-ubiquinone oxidoreductase Fe-S protein 7
           [Taeniopygia guttata]
          Length = 183

 Score =  129 bits (323), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 77/169 (45%), Positives = 94/169 (55%), Gaps = 40/169 (23%)

Query: 12  SGQSSCSLEKVDADFSRISSEITHKG-FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMM 70
           +  SS  ++K  A   R S   + +G +++  +D LV WAR  SL  MTFGLACCAVEMM
Sbjct: 44  AADSSVQVQKSSAVVPRKSYVPSSRGEYVIAKLDDLVNWARRSSLWPMTFGLACCAVEMM 103

Query: 71  QASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCA 130
             + PRYD++RFG   RASPRQ+DVMIVAGTLTNKMA ALR+                  
Sbjct: 104 HMAAPRYDMDRFGVVFRASPRQADVMIVAGTLTNKMAPALRK------------------ 145

Query: 131 NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
                        RG             CPPTAEAL+YGIL LQ+KI+R
Sbjct: 146 ---------KPPCRG------------RCPPTAEALLYGILQLQRKIKR 173


>gi|145592467|ref|YP_001154469.1| NADH-quinone oxidoreductase, B subunit [Pyrobaculum arsenaticum DSM
           13514]
 gi|145284235|gb|ABP51817.1| NADH-quinone oxidoreductase, B subunit [Pyrobaculum arsenaticum DSM
           13514]
          Length = 144

 Score =  128 bits (321), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 66/139 (47%), Positives = 89/139 (64%), Gaps = 1/139 (0%)

Query: 39  LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIV 98
           ++  VD+L  W    SL       ACC VE   A    YD ERFG  P  S RQS+++++
Sbjct: 4   ILKVVDRLRRWGTKWSLWPPHLVTACCGVEFGHAFGSAYDAERFGMLPMGSLRQSNIIVI 63

Query: 99  AGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPG 158
            GT+T KMA  ++ VY+QMPEP+YVI+MG+CA  GG ++ SY +V    ++VPVD YV G
Sbjct: 64  EGTITLKMAKFVKYVYEQMPEPKYVIAMGACAIKGGVFYGSYHMVPA-PKVVPVDGYVSG 122

Query: 159 CPPTAEALIYGILLLQKKI 177
           CPPT EAL+  +  LQ+KI
Sbjct: 123 CPPTPEALLKAVKELQEKI 141


>gi|126460649|ref|YP_001056927.1| NADH-quinone oxidoreductase, B subunit [Pyrobaculum calidifontis
           JCM 11548]
 gi|126250370|gb|ABO09461.1| NADH-quinone oxidoreductase, B subunit [Pyrobaculum calidifontis
           JCM 11548]
          Length = 145

 Score =  128 bits (321), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 65/140 (46%), Positives = 87/140 (62%), Gaps = 1/140 (0%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
            L  +VD++  W    SL       ACC VE   A    YD ERFG  P  S RQS++++
Sbjct: 4   LLKKTVDKVAKWGTKWSLWPPHLVTACCGVEFGHAFGSAYDAERFGMLPMGSLRQSNIIV 63

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           + GT+T KMA  ++ VY+QMPEP+YVI+MG+CA  GG ++ SY +V    ++VPV  YV 
Sbjct: 64  IEGTITMKMAKFVKYVYEQMPEPKYVIAMGACAIKGGVFYGSYHMVPA-SKVVPVHQYVS 122

Query: 158 GCPPTAEALIYGILLLQKKI 177
           GCPPT EAL+  +  LQ KI
Sbjct: 123 GCPPTPEALLKAVKNLQDKI 142


>gi|326484679|gb|EGE08689.1| NADH-ubiquinone oxidoreductase 20 kDa subunit [Trichophyton equinum
           CBS 127.97]
          Length = 204

 Score =  127 bits (319), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 60/108 (55%), Positives = 76/108 (70%)

Query: 20  EKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDL 79
           E+++        E T    ++T  DQ+  WAR GSL  +TFGLACC VEMM  SMPRYDL
Sbjct: 63  ERLEVPLPSQGEEPTPLRHILTKFDQVANWARQGSLWPLTFGLACCGVEMMAVSMPRYDL 122

Query: 80  ERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMG 127
           +R G   RASPRQ+DV+IV+GT+TNKM  ALR +YDQMP+P++V S G
Sbjct: 123 DRMGIIYRASPRQADVLIVSGTVTNKMGPALRLLYDQMPDPKWVTSCG 170


>gi|326471804|gb|EGD95813.1| NADH-ubiquinone oxidoreductase 20 kDa subunit [Trichophyton
           tonsurans CBS 112818]
          Length = 204

 Score =  127 bits (319), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 60/108 (55%), Positives = 76/108 (70%)

Query: 20  EKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDL 79
           E+++        E T    ++T  DQ+  WAR GSL  +TFGLACC VEMM  SMPRYDL
Sbjct: 63  ERLEVPLPSQGEEPTPLRHILTKFDQVANWARQGSLWPLTFGLACCGVEMMAVSMPRYDL 122

Query: 80  ERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMG 127
           +R G   RASPRQ+DV+IV+GT+TNKM  ALR +YDQMP+P++V S G
Sbjct: 123 DRMGIIYRASPRQADVLIVSGTVTNKMGPALRLLYDQMPDPKWVTSCG 170


>gi|224035581|gb|ACN36866.1| unknown [Zea mays]
          Length = 73

 Score =  127 bits (319), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 58/63 (92%), Positives = 61/63 (96%)

Query: 117 MPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKK 176
           MPEPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG+L LQKK
Sbjct: 1   MPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGVLQLQKK 60

Query: 177 IRR 179
           I R
Sbjct: 61  INR 63


>gi|152992439|ref|YP_001358160.1| NADH-quinone oxidoreductase, chain B [Sulfurovum sp. NBC37-1]
 gi|151424300|dbj|BAF71803.1| NADH-quinone oxidoreductase, chain B [Sulfurovum sp. NBC37-1]
          Length = 140

 Score =  127 bits (319), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 53/120 (44%), Positives = 84/120 (70%)

Query: 60  FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119
           F   CC++EM  A  PRYD ER+G+ P  +PRQ+DV+++ G ++ K+  AL R Y QMPE
Sbjct: 4   FCTGCCSLEMAAAMGPRYDWERYGYMPTPTPRQADVLMITGLVSKKILPALLRTYAQMPE 63

Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           P+YV+++G+C+  GG Y+ S SV++    I+P D+++ GCPP  EA+I G+  +++KI+ 
Sbjct: 64  PKYVVALGACSFDGGPYNDSLSVIKNPTEILPADVFIAGCPPKPEAIIEGLEQVKQKIKN 123


>gi|294646453|ref|ZP_06724094.1| NADH-quinone oxidoreductase, B subunit [Bacteroides ovatus SD CC
           2a]
 gi|292638224|gb|EFF56601.1| NADH-quinone oxidoreductase, B subunit [Bacteroides ovatus SD CC
           2a]
          Length = 115

 Score =  127 bits (319), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 53/92 (57%), Positives = 75/92 (81%)

Query: 87  RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGC 146
           RASPRQ+D+++V GT+TNKMA  L+R+YDQMP+P+YV+++G CA  GG +  SY VV G 
Sbjct: 2   RASPRQADMIMVCGTITNKMAPVLKRLYDQMPDPKYVVAVGGCAVSGGPFKKSYHVVNGV 61

Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           D+I+PVD+Y+PGCPP  EA  YG++ LQ+K++
Sbjct: 62  DKILPVDVYIPGCPPRPEAFYYGMMQLQRKVK 93


>gi|326483737|gb|EGE07747.1| NADH dehydrogenase beta subunit [Trichophyton equinum CBS 127.97]
          Length = 147

 Score =  126 bits (317), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 60/108 (55%), Positives = 76/108 (70%)

Query: 20  EKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDL 79
           E+++        E T    ++T  DQ+  WAR GSL  +TFGLACC VEMM  SMPRYDL
Sbjct: 6   ERLEVPLPSQGEEPTPLRHILTKFDQVANWARQGSLWPLTFGLACCGVEMMAVSMPRYDL 65

Query: 80  ERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMG 127
           +R G   RASPRQ+DV+IV+GT+TNKM  ALR +YDQMP+P++V S G
Sbjct: 66  DRMGIIYRASPRQADVLIVSGTVTNKMGPALRLLYDQMPDPKWVTSCG 113


>gi|115948823|ref|XP_001196585.1| PREDICTED: similar to mitochondrial complex I subunit NDUFS7,
           partial [Strongylocentrotus purpuratus]
          Length = 82

 Score =  126 bits (316), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 61/76 (80%), Positives = 66/76 (86%)

Query: 53  GSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRR 112
            SL  MTFGLACCAVEMM  + PRYD++RFG   RASPRQSDVMIVAGTLTNKMA ALR+
Sbjct: 7   SSLWPMTFGLACCAVEMMHFAAPRYDMDRFGVVFRASPRQSDVMIVAGTLTNKMAPALRK 66

Query: 113 VYDQMPEPRYVISMGS 128
           VYDQMPEPR+VISMGS
Sbjct: 67  VYDQMPEPRWVISMGS 82


>gi|171186236|ref|YP_001795155.1| NADH-quinone oxidoreductase, B subunit [Thermoproteus neutrophilus
           V24Sta]
 gi|170935448|gb|ACB40709.1| NADH-quinone oxidoreductase, B subunit [Thermoproteus neutrophilus
           V24Sta]
          Length = 147

 Score =  125 bits (315), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 62/144 (43%), Positives = 89/144 (61%), Gaps = 1/144 (0%)

Query: 36  KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDV 95
           KG +  +V ++  W    SL       ACC VE   A    YD ERFG  P  S RQS++
Sbjct: 2   KGAISQAVSRVARWGTKWSLWPPHLVTACCGVEFAHAFGSAYDAERFGMLPMGSLRQSNI 61

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
           +I+ GT+T KMA  ++ +YDQMPEP+YVI+MG+CA  GG ++ SY +V    ++VPV  Y
Sbjct: 62  LILEGTITLKMAKFVKYIYDQMPEPKYVIAMGACAIKGGVFYGSYHMVPA-SKVVPVHAY 120

Query: 156 VPGCPPTAEALIYGILLLQKKIRR 179
           + GCPPT EA++  +  +Q++I  
Sbjct: 121 ISGCPPTPEAVLKAVEKVQERISH 144


>gi|224372676|ref|YP_002607048.1| hydrogenase-4 component I [Nautilia profundicola AmH]
 gi|223589154|gb|ACM92890.1| hydrogenase-4 component I [Nautilia profundicola AmH]
          Length = 164

 Score =  125 bits (315), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 53/117 (45%), Positives = 81/117 (69%)

Query: 55  LMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVY 114
           L + T G   C +E++ A  P+YD+ERFG   R +P+QSD+++V G +T +    LRR+Y
Sbjct: 15  LHYNTGGCNGCDIEILAALAPKYDIERFGMLNRGNPKQSDILLVTGPVTKRCRDVLRRLY 74

Query: 115 DQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171
            +MPEP+ V++MG+CA+GGG +   Y V  G D I+PVD+++PGC P  EA+I G++
Sbjct: 75  LEMPEPKVVVAMGACAHGGGIFRDFYHVENGVDNIIPVDVWIPGCAPRVEAVIDGMV 131


>gi|117925498|ref|YP_866115.1| NADH dehydrogenase subunit B [Magnetococcus sp. MC-1]
 gi|117609254|gb|ABK44709.1| Membrane bound protein complex subunit mbxJ [Magnetococcus sp.
           MC-1]
          Length = 213

 Score =  125 bits (315), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 63/155 (40%), Positives = 91/155 (58%)

Query: 25  DFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF 84
           D+   ++     G  +  V+ L  WAR+ S+  + FG  C A+EM     PR+D  R+G 
Sbjct: 25  DYFCEATPTVQTGEYLQIVEDLFNWARSNSIWVLGFGTGCGAIEMRPLMTPRFDAYRYGV 84

Query: 85  APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR 144
             RA+PRQS++ IV+G L+ K    + R Y+QM  P+YV+ +GSC   GG Y  SY+ ++
Sbjct: 85  QWRATPRQSNLFIVSGYLSVKTLKRVVRAYEQMQSPKYVMGLGSCTINGGMYWDSYNTIK 144

Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
             D  +PVD+YV GC P  EAL+ GI  L+K IR 
Sbjct: 145 QLDDYLPVDLYVTGCMPRPEALLSGIEALKKIIRE 179


>gi|327304110|ref|XP_003236747.1| NADH-ubiquinone oxidoreductase subunit B [Trichophyton rubrum CBS
           118892]
 gi|326462089|gb|EGD87542.1| NADH-ubiquinone oxidoreductase subunit B [Trichophyton rubrum CBS
           118892]
          Length = 182

 Score =  125 bits (314), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 58/105 (55%), Positives = 75/105 (71%)

Query: 20  EKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDL 79
           ++++        E T    ++T  DQ+  WAR GSL  +TFGLACC VEMM  SMPRYDL
Sbjct: 63  KRLEVPLPSQGEEPTPLRHILTKFDQVANWARQGSLWPLTFGLACCGVEMMAVSMPRYDL 122

Query: 80  ERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           +R G   RASPRQ+DV+IV+GT+TNKM  ALR +YDQMP+P++VI
Sbjct: 123 DRMGIIYRASPRQADVLIVSGTVTNKMGPALRLLYDQMPDPKWVI 167


>gi|116191457|ref|XP_001221541.1| hypothetical protein CHGG_05446 [Chaetomium globosum CBS 148.51]
 gi|88181359|gb|EAQ88827.1| hypothetical protein CHGG_05446 [Chaetomium globosum CBS 148.51]
          Length = 189

 Score =  125 bits (314), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 69/140 (49%), Positives = 79/140 (56%), Gaps = 44/140 (31%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           + ++++D L+ WAR GSL  M+FGLACCA+EMM  SMPRYD +R G   RASPRQSDVMI
Sbjct: 81  YALSTLDGLINWARQGSLWPMSFGLACCAIEMMHLSMPRYDNDRQGIIFRASPRQSDVMI 140

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAG                                            G DRIVPVDIYVP
Sbjct: 141 VAG--------------------------------------------GVDRIVPVDIYVP 156

Query: 158 GCPPTAEALIYGILLLQKKI 177
           GCPPTAEAL YGI  LQKK+
Sbjct: 157 GCPPTAEALQYGIFQLQKKM 176


>gi|297720477|ref|NP_001172600.1| Os01g0791600 [Oryza sativa Japonica Group]
 gi|255673769|dbj|BAH91330.1| Os01g0791600 [Oryza sativa Japonica Group]
          Length = 379

 Score =  125 bits (314), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 53/93 (56%), Positives = 75/93 (80%), Gaps = 1/93 (1%)

Query: 76  RYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY 135
           R+D +R+G  PR+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG 
Sbjct: 152 RFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGM 211

Query: 136 YHY-SYSVVRGCDRIVPVDIYVPGCPPTAEALI 167
           +   SYS VRG D+++PVD+Y+PGCPP  EA+I
Sbjct: 212 FSTDSYSTVRGVDKLIPVDVYLPGCPPKPEAVI 244


>gi|115691401|ref|XP_794478.2| PREDICTED: similar to mitochondrial complex I subunit NDUFS7,
           partial [Strongylocentrotus purpuratus]
          Length = 81

 Score =  124 bits (312), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 60/74 (81%), Positives = 65/74 (87%)

Query: 54  SLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRV 113
           SL  MTFGLACCAVEMM  + PRYD++RFG   RASPRQSDVMIVAGTLTNKMA ALR+V
Sbjct: 8   SLWPMTFGLACCAVEMMHFAAPRYDMDRFGVVFRASPRQSDVMIVAGTLTNKMAPALRKV 67

Query: 114 YDQMPEPRYVISMG 127
           YDQMPEPR+VISMG
Sbjct: 68  YDQMPEPRWVISMG 81


>gi|325969611|ref|YP_004245803.1| NADH-quinone oxidoreductase subunits B and C [Vulcanisaeta
           moutnovskia 768-28]
 gi|323708814|gb|ADY02301.1| NADH-quinone oxidoreductase subunits B and C [Vulcanisaeta
           moutnovskia 768-28]
          Length = 419

 Score =  124 bits (311), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 62/130 (47%), Positives = 83/130 (63%), Gaps = 1/130 (0%)

Query: 49  WARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108
           W    SL  +    ACC VEM     P YD ER G  P  SPRQ+++++V GT++ KMA 
Sbjct: 13  WGTKYSLWPVHLVTACCGVEMAHTWNPTYDAERLGSLPWHSPRQTNLILVEGTISFKMAR 72

Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168
            LR +++QM +P+YVI+MGSCA  GG +  SY  V   ++IVPVD Y  GCPPT EA+I 
Sbjct: 73  VLRYIWEQMSDPKYVIAMGSCAAEGGVFWNSYHAV-PVNKIVPVDAYAIGCPPTPEAVIQ 131

Query: 169 GILLLQKKIR 178
            I ++Q+KI 
Sbjct: 132 MIRIVQRKIE 141


>gi|307595389|ref|YP_003901706.1| NADH-quinone oxidoreductase subunit B [Vulcanisaeta distributa DSM
           14429]
 gi|307550590|gb|ADN50655.1| NADH-quinone oxidoreductase, B subunit [Vulcanisaeta distributa DSM
           14429]
          Length = 420

 Score =  124 bits (311), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 62/140 (44%), Positives = 87/140 (62%), Gaps = 1/140 (0%)

Query: 39  LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIV 98
           L  +++    W    SL  +    ACC VEM     P YD ER G  P  +PRQ+++++V
Sbjct: 3   LDKALEPYKKWGTKYSLWPVHLVTACCGVEMAHTWNPTYDAERLGSLPWHAPRQTNLILV 62

Query: 99  AGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPG 158
            GT+T KMA  LR V++QM +P+YVI+MGSCA  GG +  SY  V   ++I+P+D Y  G
Sbjct: 63  EGTITFKMARVLRYVWEQMSDPKYVIAMGSCAAEGGIFWNSYHAV-PVNKIIPIDAYAIG 121

Query: 159 CPPTAEALIYGILLLQKKIR 178
           CPPT EA+I  I ++Q+KI 
Sbjct: 122 CPPTPEAVIQMIKIVQRKIE 141


>gi|254166707|ref|ZP_04873561.1| NADH-quinone oxidoreductase, B subunit subfamily [Aciduliprofundum
           boonei T469]
 gi|254167366|ref|ZP_04874218.1| NADH-quinone oxidoreductase, B subunit subfamily [Aciduliprofundum
           boonei T469]
 gi|289596350|ref|YP_003483046.1| NADH-quinone oxidoreductase, B subunit [Aciduliprofundum boonei
           T469]
 gi|197623629|gb|EDY36192.1| NADH-quinone oxidoreductase, B subunit subfamily [Aciduliprofundum
           boonei T469]
 gi|197624317|gb|EDY36878.1| NADH-quinone oxidoreductase, B subunit subfamily [Aciduliprofundum
           boonei T469]
 gi|289534137|gb|ADD08484.1| NADH-quinone oxidoreductase, B subunit [Aciduliprofundum boonei
           T469]
          Length = 146

 Score =  123 bits (309), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 52/116 (44%), Positives = 79/116 (68%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E++ A  PRYD+ERFG     SPR +D ++V G +T  M   ++R Y+Q+P+P+ VI
Sbjct: 26  CDIEILAALTPRYDVERFGIKLVGSPRHADALLVTGPVTRDMEDKVKRFYEQVPDPKVVI 85

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
            +GSC   GG +H SY++V   D+++PVD+YVPGCPP  EA+I G++    K+ R+
Sbjct: 86  VIGSCGISGGVFHESYNLVGPVDKVIPVDVYVPGCPPRPEAIIDGVVKAWMKLERL 141


>gi|296242362|ref|YP_003649849.1| NADH-quinone oxidoreductase subunit B [Thermosphaera aggregans DSM
           11486]
 gi|296094946|gb|ADG90897.1| NADH-quinone oxidoreductase, B subunit [Thermosphaera aggregans DSM
           11486]
          Length = 155

 Score =  123 bits (308), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 55/118 (46%), Positives = 78/118 (66%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E++ +  P YD ERFG     S R  D+++V G LT K    LRR+YDQMP P++V+
Sbjct: 35  CDIEVLASITPLYDPERFGVKLAPSIRHGDILVVTGALTKKAGERLRRLYDQMPNPKFVV 94

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
           ++G+CA  GG ++ SYSV  G D+ VPV +Y+PGCPP  EA++ GI+ L KK+   G 
Sbjct: 95  AVGACAVDGGVFYKSYSVEGGADKAVPVAMYIPGCPPRPEAILDGIVKLLKKLEESGE 152


>gi|221104717|ref|XP_002169223.1| PREDICTED: similar to CG9172 CG9172-PA, partial [Hydra
           magnipapillata]
          Length = 70

 Score =  123 bits (308), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 58/70 (82%), Positives = 63/70 (90%)

Query: 58  MTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQM 117
           MTFGLACCAVEMM  + PRYD++RFG   RASPRQ+DVMIVAGTLTNKMA ALRRVYDQM
Sbjct: 1   MTFGLACCAVEMMHFAAPRYDMDRFGVVFRASPRQADVMIVAGTLTNKMAPALRRVYDQM 60

Query: 118 PEPRYVISMG 127
           PEPR+VISMG
Sbjct: 61  PEPRWVISMG 70


>gi|323700400|ref|ZP_08112312.1| NADH dehydrogenase (quinone) [Desulfovibrio sp. ND132]
 gi|323460332|gb|EGB16197.1| NADH dehydrogenase (quinone) [Desulfovibrio desulfuricans ND132]
          Length = 147

 Score =  122 bits (307), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 53/121 (43%), Positives = 82/121 (67%), Gaps = 1/121 (0%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E++    P YD+ERFG     +P+ +DV++V GT+ ++    L+ +YDQMPEP+ VI
Sbjct: 27  CDIEVLACLTPLYDVERFGIVHVGNPKHADVLLVTGTVNHRNKKVLKNLYDQMPEPKAVI 86

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILL-LQKKIRRVGNV 183
           ++GSC N GG +  +Y+VV G D+++PVD+YVPGCP   EA+I G++  L K  ++V   
Sbjct: 87  AIGSCGNTGGIFREAYNVVGGVDKVIPVDVYVPGCPAKPEAIIDGVVAGLAKFAQKVEEA 146

Query: 184 K 184
           K
Sbjct: 147 K 147


>gi|149194384|ref|ZP_01871481.1| NADH:ubiquinone oxidoreductase 20 kD subunit and related Fe-S
           oxidoreductase [Caminibacter mediatlanticus TB-2]
 gi|149135559|gb|EDM24038.1| NADH:ubiquinone oxidoreductase 20 kD subunit and related Fe-S
           oxidoreductase [Caminibacter mediatlanticus TB-2]
          Length = 164

 Score =  122 bits (307), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 53/117 (45%), Positives = 80/117 (68%)

Query: 55  LMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVY 114
           L + T G   C +E++    P+YD+ERFG   R +P+QSD+++V G +T      LRR+Y
Sbjct: 15  LHYNTGGCNGCDIEILATLAPKYDIERFGALNRGNPKQSDILLVTGPVTMHCKDVLRRLY 74

Query: 115 DQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171
            +MPEP+ V++MG+C +GGG + + Y+V  G D I+PVD+++PGC P  EALI GI+
Sbjct: 75  LEMPEPKVVVAMGACGHGGGVFRHLYNVNDGVDSIIPVDVWIPGCCPRPEALIDGIV 131


>gi|256380641|ref|YP_003104301.1| NADH-quinone oxidoreductase, B subunit [Actinosynnema mirum DSM
           43827]
 gi|255924944|gb|ACU40455.1| NADH-quinone oxidoreductase, B subunit [Actinosynnema mirum DSM
           43827]
          Length = 137

 Score =  122 bits (306), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 57/129 (44%), Positives = 83/129 (64%)

Query: 49  WARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108
           W  T  +  +  GLACC VE+M A    +DL+  G  P  S  ++ V++V+GT+T+ M  
Sbjct: 8   WGTTYRVTVLDLGLACCGVEVMAALEGGHDLDALGVDPVRSAGEAHVLVVSGTVTDVMLP 67

Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168
           A+   Y +MPEPRYV+S+G+C+N GG Y  SYSV +G D+ +PV + VPGCPP  EAL+ 
Sbjct: 68  AVLAAYQEMPEPRYVLSVGACSNTGGPYWDSYSVTKGIDQALPVHVAVPGCPPRPEALLE 127

Query: 169 GILLLQKKI 177
           G+  L + +
Sbjct: 128 GLAALHRMV 136


>gi|22002572|gb|AAM82723.1| NdhK [Synechococcus elongatus PCC 7942]
          Length = 235

 Score =  122 bits (305), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 63/150 (42%), Positives = 92/150 (61%), Gaps = 4/150 (2%)

Query: 32  EITH---KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88
           EIT    +  ++T++D L  WAR  SL  + +G ACC +E       R+D +RF +    
Sbjct: 17  EITQGLSENVILTTLDDLYNWARLSSLWPLMYGTACCFIEFAALIGSRFDFDRFAWCLVV 76

Query: 89  SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCD 147
           +     V      +T KMA AL R+Y+QMPEP+YVI+MG+C   GG +   S + VRG D
Sbjct: 77  ASAGRFVDHKPVPVTMKMAPALVRLYEQMPEPKYVIAMGACTITGGMFSADSTTTVRGVD 136

Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
           +++PVD+Y+PGCPP  EA+I  I+ L+KK+
Sbjct: 137 KLLPVDVYIPGCPPRPEAIIDAIVKLRKKV 166


>gi|228903773|ref|ZP_04067890.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
           [Bacillus thuringiensis IBL 4222]
 gi|228924034|ref|ZP_04087310.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
           [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1]
 gi|228942446|ref|ZP_04104983.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
           [Bacillus thuringiensis serovar berliner ATCC 10792]
 gi|228975378|ref|ZP_04135934.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
           [Bacillus thuringiensis serovar thuringiensis str.
           T01001]
 gi|229147840|ref|ZP_04276181.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
           [Bacillus cereus BDRD-ST24]
 gi|229199422|ref|ZP_04326086.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
           [Bacillus cereus m1293]
 gi|228584050|gb|EEK42204.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
           [Bacillus cereus m1293]
 gi|228635490|gb|EEK91979.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
           [Bacillus cereus BDRD-ST24]
 gi|228784360|gb|EEM32383.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
           [Bacillus thuringiensis serovar thuringiensis str.
           T01001]
 gi|228817188|gb|EEM63276.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
           [Bacillus thuringiensis serovar berliner ATCC 10792]
 gi|228835524|gb|EEM80889.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
           [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1]
 gi|228855862|gb|EEN00405.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
           [Bacillus thuringiensis IBL 4222]
          Length = 95

 Score =  122 bits (305), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 55/83 (66%), Positives = 69/83 (83%)

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
           MIV+GT+T KMA  +RR+YDQMPEP++VI+MGSCA  GG Y  SY+VV+G D+IVPVD+Y
Sbjct: 1   MIVSGTVTKKMAPIVRRLYDQMPEPKWVIAMGSCATAGGPYVNSYAVVKGVDQIVPVDVY 60

Query: 156 VPGCPPTAEALIYGILLLQKKIR 178
           +PGCPP   ALIYGI  L++KIR
Sbjct: 61  IPGCPPNPAALIYGINKLKEKIR 83


>gi|327400429|ref|YP_004341268.1| NADH-quinone oxidoreductase subunit B [Archaeoglobus veneficus
           SNP6]
 gi|327315937|gb|AEA46553.1| NADH-quinone oxidoreductase, B subunit [Archaeoglobus veneficus
           SNP6]
          Length = 362

 Score =  122 bits (305), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 61/131 (46%), Positives = 80/131 (61%), Gaps = 1/131 (0%)

Query: 49  WARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108
           W    SL  +    ACC VE+       YD ER+G       RQ++++IV G ++ KMA 
Sbjct: 24  WGAKWSLWAVHLVTACCGVELAHTYASGYDAERWGSLNFGMMRQTNLIIVEGAISKKMAR 83

Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168
           ALR  ++QMPEP++VI MG+C   GG +  SY + R  + IVPVD Y+PGCPPT EALI 
Sbjct: 84  ALRITWEQMPEPKFVIVMGACGIEGGLFWNSYHIARPSE-IVPVDYYIPGCPPTPEALIR 142

Query: 169 GILLLQKKIRR 179
            I  LQKKI +
Sbjct: 143 AIRALQKKIEK 153


>gi|187251539|ref|YP_001876021.1| NiFe-hydrogenase III small subunit [Elusimicrobium minutum Pei191]
 gi|186971699|gb|ACC98684.1| NiFe-hydrogenase III small subunit [Elusimicrobium minutum Pei191]
          Length = 149

 Score =  122 bits (305), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 56/133 (42%), Positives = 85/133 (63%), Gaps = 3/133 (2%)

Query: 44  DQLVTWARTGS---LMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAG 100
           +Q+V WAR  S   L + +     C +E + A  P++D+ERFG     +PR +DVM+V+G
Sbjct: 6   EQVVAWARRKSPWILHYNSGSCNGCDIETVAALTPKFDVERFGILQHGTPRHADVMVVSG 65

Query: 101 TLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCP 160
            ++ +    L R+Y+QM EP++V+++G+CA  GG     Y V+ G D+I+PV  Y+PGCP
Sbjct: 66  AVSRQQEKRLLRIYNQMAEPKFVVAVGACACSGGVLQGCYGVLGGVDKILPVSAYIPGCP 125

Query: 161 PTAEALIYGILLL 173
           P  EALI GI+ L
Sbjct: 126 PRPEALIDGIVKL 138


>gi|317154076|ref|YP_004122124.1| NADH dehydrogenase (quinone) [Desulfovibrio aespoeensis Aspo-2]
 gi|316944327|gb|ADU63378.1| NADH dehydrogenase (quinone) [Desulfovibrio aespoeensis Aspo-2]
          Length = 147

 Score =  121 bits (304), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 48/108 (44%), Positives = 77/108 (71%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E++    P YD+ERFG     +P+ +DV++V GT+ ++    L+ +YDQMPEP+ VI
Sbjct: 27  CDIEVLACLTPLYDVERFGIINVGNPKHADVLLVTGTVNHRNKKVLKNIYDQMPEPKAVI 86

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILL 172
           ++G+C N GG +  +Y+VV G D+++PVD+YVPGCP   EA+I G+++
Sbjct: 87  AIGACGNTGGVFRDAYNVVGGVDKVIPVDVYVPGCPAKPEAIIDGVVV 134


>gi|332796230|ref|YP_004457730.1| NADH-quinone oxidoreductase subunit B [Acidianus hospitalis W1]
 gi|332693965|gb|AEE93432.1| NADH-quinone oxidoreductase, B subunit [Acidianus hospitalis W1]
          Length = 170

 Score =  121 bits (304), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 64/142 (45%), Positives = 90/142 (63%)

Query: 43  VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL 102
           +  L  W    SL    F  +CC  E    +  R+D ERFG  P +S RQS+++++ GT+
Sbjct: 28  IRDLRDWGTAFSLWPPHFTTSCCGAEFGAFAAARFDAERFGMLPFSSSRQSNILVIEGTM 87

Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162
           T KMA A R VY+QMPEP+YV+++G+C+  GG +  SY+ V   +  +PVDIYVPGCP  
Sbjct: 88  TRKMARAARIVYEQMPEPKYVMAIGACSLEGGIFWNSYNTVLPSEVGIPVDIYVPGCPIR 147

Query: 163 AEALIYGILLLQKKIRRVGNVK 184
            EA+  G+L+LQKKIR    +K
Sbjct: 148 PEAIARGLLMLQKKIRHQSTIK 169


>gi|228994019|ref|ZP_04153920.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
           [Bacillus pseudomycoides DSM 12442]
 gi|229000087|ref|ZP_04159657.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
           [Bacillus mycoides Rock3-17]
 gi|228759624|gb|EEM08600.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
           [Bacillus mycoides Rock3-17]
 gi|228765667|gb|EEM14320.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
           [Bacillus pseudomycoides DSM 12442]
          Length = 95

 Score =  121 bits (304), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 55/83 (66%), Positives = 69/83 (83%)

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
           MIV+GT+T KMA  +RR+YDQMPEP++VI+MGSCA  GG Y  SY+VV+G D+IVPVD+Y
Sbjct: 1   MIVSGTVTKKMAPIVRRLYDQMPEPKWVIAMGSCATAGGPYVNSYAVVKGVDQIVPVDVY 60

Query: 156 VPGCPPTAEALIYGILLLQKKIR 178
           +PGCPP   ALIYGI  L++KIR
Sbjct: 61  IPGCPPNPAALIYGINKLKEKIR 83


>gi|229014468|ref|ZP_04171586.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
           [Bacillus mycoides DSM 2048]
 gi|228746818|gb|EEL96703.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
           [Bacillus mycoides DSM 2048]
          Length = 95

 Score =  121 bits (304), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 55/83 (66%), Positives = 69/83 (83%)

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
           MIV+GT+T KMA  +RR+YDQMPEP++VI+MGSCA  GG Y  SY+VV+G D+IVPVD+Y
Sbjct: 1   MIVSGTVTKKMAPIVRRLYDQMPEPKWVIAMGSCATAGGPYVNSYAVVKGVDQIVPVDVY 60

Query: 156 VPGCPPTAEALIYGILLLQKKIR 178
           +PGCPP   ALIYGI  L++KIR
Sbjct: 61  IPGCPPNPAALIYGINKLKEKIR 83


>gi|322419366|ref|YP_004198589.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Geobacter sp. M18]
 gi|320125753|gb|ADW13313.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Geobacter sp. M18]
          Length = 164

 Score =  121 bits (304), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 52/117 (44%), Positives = 78/117 (66%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E++    P YD+ERFG     +P+ +DV++V GT+ ++    L  +YDQMPEP+ V+
Sbjct: 27  CDIEVLACLTPLYDVERFGILNVGNPKHADVLVVTGTVNHRNRKVLENIYDQMPEPKVVV 86

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
           ++G+C   GG +  S++VV G DR+VPVD YVPGC P  EA+I GI+L  +K+   G
Sbjct: 87  AVGACGCSGGVFRDSFNVVGGVDRVVPVDAYVPGCAPKPEAIIDGIVLALEKLAEKG 143


>gi|212224742|ref|YP_002307978.1| membrane bound hydrogenase, NiFe-hydrogenase small subunit
           [Thermococcus onnurineus NA1]
 gi|212009699|gb|ACJ17081.1| membrane bound hydrogenase, NiFe-hydrogenase small subunit
           [Thermococcus onnurineus NA1]
          Length = 175

 Score =  120 bits (302), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 58/162 (35%), Positives = 95/162 (58%), Gaps = 2/162 (1%)

Query: 21  KVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLAC--CAVEMMQASMPRYD 78
           KV AD +R +   + +  L   + QL  +      ++     +C  C +E++ A  PRYD
Sbjct: 4   KVPADQNRTNGTTSEREMLEKRIAQLCRFIGRSPWVFHVNSGSCNGCDIEIIAALTPRYD 63

Query: 79  LERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY 138
            ERFG     SPR +DV++V G +T++    ++ VY+Q P+P+ VI++GSC  GG  ++ 
Sbjct: 64  AERFGVKLVGSPRHADVLLVTGPVTDQSLERVKLVYEQTPDPKIVIAVGSCPTGGSVFYE 123

Query: 139 SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           S         I+PVD+YVPGCPP  EA++YG++L  +K+ ++
Sbjct: 124 SPFTNAPLSNIIPVDVYVPGCPPRPEAILYGVVLALEKLAKI 165


>gi|297616846|ref|YP_003702005.1| NADH dehydrogenase (quinone) [Syntrophothermus lipocalidus DSM
           12680]
 gi|297144683|gb|ADI01440.1| NADH dehydrogenase (quinone) [Syntrophothermus lipocalidus DSM
           12680]
          Length = 165

 Score =  120 bits (301), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 57/137 (41%), Positives = 82/137 (59%), Gaps = 3/137 (2%)

Query: 46  LVTWARTGSLMWMTF---GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL 102
           LV  AR+ S   M F   G   C++E+     P YDLERFG     +P+ +DV++V GT+
Sbjct: 3   LVHRARSKSPWVMHFDTAGCNGCSIEVFACFTPLYDLERFGIVNVGNPKHADVLLVTGTV 62

Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162
            +K    L+ VYDQM  P+ ++++G CA  G  +H SY+ + G D++VPVD+YVPGC   
Sbjct: 63  NHKAKRVLKTVYDQMNHPKVIVAVGICATSGNVFHQSYNCLGGVDKVVPVDVYVPGCAAR 122

Query: 163 AEALIYGILLLQKKIRR 179
            E +I GI L  KK+  
Sbjct: 123 PEVIIDGIFLALKKLEE 139


>gi|327310885|ref|YP_004337782.1| NADH-quinone oxidoreductase subunits B and D [Thermoproteus
           uzoniensis 768-20]
 gi|326947364|gb|AEA12470.1| NADH-quinone oxidoreductase subunits B and D [Thermoproteus
           uzoniensis 768-20]
          Length = 561

 Score =  120 bits (301), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 58/129 (44%), Positives = 82/129 (63%), Gaps = 1/129 (0%)

Query: 49  WARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108
           W    SL       ACC VE+  A  P YD ER G  P  S R S+++I+ GT+T KMA 
Sbjct: 16  WGTKWSLWPPHLVTACCGVELAHAFGPAYDAERLGVLPMPSARHSNLLIIEGTITLKMAK 75

Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168
            ++ VY+QMPEP+YV++MG+CA  GG ++ SY +V   + +V VD+YV GCPPT EAL+ 
Sbjct: 76  FVKWVYEQMPEPKYVVAMGACAIKGGVFYGSYHMVPASN-VVGVDVYVSGCPPTPEALLK 134

Query: 169 GILLLQKKI 177
            +  +Q+ +
Sbjct: 135 AVEKVQENV 143


>gi|242399265|ref|YP_002994689.1| Membrane-bound hydrogenase MBH 2, subunit Mbh2J (hydrogenase
           subunit) [Thermococcus sibiricus MM 739]
 gi|242265658|gb|ACS90340.1| Membrane-bound hydrogenase MBH 2, subunit Mbh2J (hydrogenase
           subunit) [Thermococcus sibiricus MM 739]
          Length = 148

 Score =  120 bits (300), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 50/116 (43%), Positives = 76/116 (65%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E++ A  PRYD ERFG     SPR +DV++V G +    A  LRR+Y+QMP+P+ VI
Sbjct: 24  CDIEIIAALTPRYDAERFGIKLVGSPRHADVLLVTGAIPKDFADKLRRIYEQMPDPKAVI 83

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
            +G+C   GG ++ SY++    D I+PVD+YVPGCPP  EA++  ++    K+ ++
Sbjct: 84  VIGNCGTSGGVFYDSYNIAGPIDEIIPVDVYVPGCPPRPEAIVDAVVKAWLKLEKL 139


>gi|218883730|ref|YP_002428112.1| NADH-quinone oxidoreductase, B subunit [Desulfurococcus
           kamchatkensis 1221n]
 gi|218765346|gb|ACL10745.1| NADH-quinone oxidoreductase, B subunit [Desulfurococcus
           kamchatkensis 1221n]
          Length = 160

 Score =  119 bits (298), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 54/114 (47%), Positives = 77/114 (67%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E++ A  P YD ERFG     S R  D+++V G +T K A  L+R+YDQMP P++VI
Sbjct: 35  CDIEVLAAITPLYDPERFGVKLAPSIRHGDILVVTGAVTKKAAERLKRLYDQMPCPKFVI 94

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           ++G+CA  GG +  SY V+ G D+ VPV +Y+PGCPP  EA++ GI+ L KK+ 
Sbjct: 95  AVGACACTGGVFSKSYPVLAGADKAVPVSMYIPGCPPRPEAILDGIVKLLKKLE 148


>gi|239904914|ref|YP_002951652.1| Ech hydrogenase subunit EchC [Desulfovibrio magneticus RS-1]
 gi|239794777|dbj|BAH73766.1| Ech hydrogenase subunit EchC [Desulfovibrio magneticus RS-1]
          Length = 147

 Score =  119 bits (298), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 47/116 (40%), Positives = 79/116 (68%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E++    P YD+ERFG     +P+ +DV++V GT+  +    L+ +YDQMP P+ VI
Sbjct: 27  CDIEVLACLTPLYDIERFGILNIGNPKHADVLLVTGTVNQRNKHVLKNIYDQMPTPKAVI 86

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           ++G+C   GG +  +Y+VV G D+++PVD+YVPGCP   EA+I G++   +K++++
Sbjct: 87  AIGACGCSGGVFREAYNVVGGVDKVIPVDVYVPGCPARPEAIIDGVVAALEKVKKL 142


>gi|126465551|ref|YP_001040660.1| NADH-quinone oxidoreductase, B subunit [Staphylothermus marinus F1]
 gi|126014374|gb|ABN69752.1| NADH-quinone oxidoreductase, B subunit [Staphylothermus marinus F1]
          Length = 179

 Score =  119 bits (297), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 58/132 (43%), Positives = 79/132 (59%)

Query: 46  LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNK 105
              W R+ S+  + +  AC A+E+    M   D ER+G  P  SPRQ+DV+++ G +T K
Sbjct: 11  FAEWVRSRSIWMIHYCSACGAIELPPNMMAPLDAERWGIMPAPSPRQADVLVIMGYVTKK 70

Query: 106 MASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEA 165
               L R+Y QMPEPRYV+   +C   GG Y  SYS V+  D  +PVD++VPGC P AE 
Sbjct: 71  TLKVLMRLYHQMPEPRYVMVGCNCPATGGLYWDSYSTVKAVDEFLPVDVWVPGCMPRAED 130

Query: 166 LIYGILLLQKKI 177
            + G L L+KKI
Sbjct: 131 WLQGFLKLRKKI 142


>gi|156937336|ref|YP_001435132.1| NADH-quinone oxidoreductase, B subunit [Ignicoccus hospitalis
           KIN4/I]
 gi|156566320|gb|ABU81725.1| NADH-quinone oxidoreductase, B subunit [Ignicoccus hospitalis
           KIN4/I]
          Length = 207

 Score =  118 bits (296), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 61/162 (37%), Positives = 91/162 (56%), Gaps = 13/162 (8%)

Query: 26  FSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA 85
           F ++S E+  K      V + + W+R  SL  +  G+ CCA+EMMQA+   +D ER G  
Sbjct: 6   FKKVSRELIKKS---APVKEALKWSRRNSLWLLHLGIMCCAIEMMQAAFAFHDFERLGVL 62

Query: 86  PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRG 145
            RA+PRQ DV+++ G +  K+A  LRR++ Q P PR+VI MG CA  GG +  S  V+ G
Sbjct: 63  ARATPRQVDVILINGPVNRKLAERLRRLFMQTPGPRFVIVMGECAINGGPWWQSDYVLDG 122

Query: 146 CDRIVP-------VDIYV---PGCPPTAEALIYGILLLQKKI 177
              ++         D++V    GCPP  E L+  IL +++ I
Sbjct: 123 IHEVIESLPEEYRKDVHVVNLAGCPPRPEGLLRAILKMEELI 164


>gi|206890862|ref|YP_002248820.1| hydrogenase-4 component I [Thermodesulfovibrio yellowstonii DSM
           11347]
 gi|206742800|gb|ACI21857.1| hydrogenase-4 component I [Thermodesulfovibrio yellowstonii DSM
           11347]
          Length = 156

 Score =  118 bits (295), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 50/118 (42%), Positives = 79/118 (66%), Gaps = 4/118 (3%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E++    P YD+ERFG    +SPR +D ++++G +T      ++ VY+  PEP+ VI
Sbjct: 29  CDIELLDVLTPYYDIERFGMKAVSSPRHADALVISGPVTRPTVEFVKSVYEATPEPKIVI 88

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKKIR 178
           ++GSCA  GG +  SY+VV G D+I+PV +Y+PGCPP  EA+++GI     + +KKI+
Sbjct: 89  ALGSCATAGGIWFDSYNVVGGVDKIIPVHLYIPGCPPRPEAILFGIAQALGISKKKIK 146


>gi|262366272|gb|ACY62829.1| NADH dehydrogenase I chain B [Yersinia pestis D182038]
          Length = 145

 Score =  118 bits (295), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 57/103 (55%), Positives = 75/103 (72%), Gaps = 5/103 (4%)

Query: 75  PRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGG 134
           PR+  E      RASPRQ+D M+VAGT   KMA  ++R+Y+QM EP++VISMG+CAN GG
Sbjct: 4   PRFGAEVL----RASPRQADFMVVAGTCFTKMAPVIQRLYEQMLEPKWVISMGACANSGG 59

Query: 135 YYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
            Y   YSVV+G D+ +PVD+Y+PGCPP  EA +  +LLLQ+ I
Sbjct: 60  MYDI-YSVVQGVDKFLPVDVYIPGCPPRPEAYMQALLLLQESI 101


>gi|118581926|ref|YP_903176.1| NADH-quinone oxidoreductase subunit B [Pelobacter propionicus DSM
           2379]
 gi|118504636|gb|ABL01119.1| NADH-quinone oxidoreductase, B subunit [Pelobacter propionicus DSM
           2379]
          Length = 144

 Score =  117 bits (294), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 54/140 (38%), Positives = 90/140 (64%), Gaps = 3/140 (2%)

Query: 42  SVDQLVTWARTGSLMWMTFGL-AC--CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIV 98
           ++D+LVTWAR  S   + F   AC  C +E++ +  PR+DLERFG   + +PR +DV++ 
Sbjct: 3   ALDKLVTWARIKSPWVIHFNTGACNGCDIEIVDSLTPRFDLERFGIQLKGTPRHADVLLC 62

Query: 99  AGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPG 158
           +G +T +    L R+Y+QM +P++VI++G+CA   G +   Y+V+ G D ++PV  Y+PG
Sbjct: 63  SGPVTRQTKDRLLRIYEQMADPKFVIAVGTCACSAGVFQGCYNVLGGTDTVLPVSAYIPG 122

Query: 159 CPPTAEALIYGILLLQKKIR 178
           C    EA+I G++ L   ++
Sbjct: 123 CAARPEAIIDGVVKLLSTLK 142


>gi|303248163|ref|ZP_07334427.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfovibrio
           fructosovorans JJ]
 gi|302490427|gb|EFL50336.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfovibrio
           fructosovorans JJ]
          Length = 147

 Score =  117 bits (294), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 47/114 (41%), Positives = 77/114 (67%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E++    P YD+ERFG     +P+ +DV++V GT+  +    L+ +YDQMP P+ VI
Sbjct: 27  CDIEVLACLTPLYDIERFGIVNVGNPKHADVLLVTGTVNQRNKHVLKNIYDQMPGPKAVI 86

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           ++G+C   GG +  +Y+VV G D+++PVD+YVPGCP   EA+I G++   +K++
Sbjct: 87  AIGACGCTGGVFREAYNVVGGVDKVIPVDVYVPGCPARPEAIIDGVVAALEKVK 140


>gi|283853893|ref|ZP_06371106.1| NADH-quinone oxidoreductase, B subunit [Desulfovibrio sp. FW1012B]
 gi|283570716|gb|EFC18763.1| NADH-quinone oxidoreductase, B subunit [Desulfovibrio sp. FW1012B]
          Length = 147

 Score =  117 bits (294), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 47/114 (41%), Positives = 78/114 (68%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E++    P YD+ERFG     +P+ +DV++V GT+ ++    L+ +YDQMP P+ VI
Sbjct: 27  CDIEVLACLTPLYDIERFGIINVGNPKHADVLLVTGTVNHRNKHVLKNIYDQMPGPKAVI 86

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           ++G+C   GG +  +Y+VV G D+++PVD+YVPGCP   EA+I G++   +K++
Sbjct: 87  AIGACGCTGGVFREAYNVVGGVDKVIPVDVYVPGCPARPEAIIDGVVAALEKVK 140


>gi|57642024|ref|YP_184502.1| membrane bound hydrogenase, NiFe-hydrogenase small subunit
           [Thermococcus kodakarensis KOD1]
 gi|57160348|dbj|BAD86278.1| membrane bound hydrogenase, NiFe-hydrogenase small subunit
           [Thermococcus kodakarensis KOD1]
          Length = 176

 Score =  117 bits (294), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 49/116 (42%), Positives = 79/116 (68%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E++ A  PRYD ERFG     SPR +D+++V G +TN+    ++ VY+Q P+P+ VI
Sbjct: 50  CDIEIIAALTPRYDAERFGVKLVGSPRHADILVVTGPVTNQSLERVKLVYEQTPDPKIVI 109

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           ++G+C  GG  ++ S       DR++PVD+YVPGCPP  EA+++G++L  +K+ R+
Sbjct: 110 AVGACPTGGSVFYESPFTNAPLDRVIPVDVYVPGCPPRPEAILHGVVLALEKLARM 165


>gi|14591227|ref|NP_143304.1| NADH-ubiquinone oxidoreductase subunit [Pyrococcus horikoshii OT3]
 gi|3257858|dbj|BAA30541.1| 173aa long hypothetical NADH-ubiquinone oxidoreductase subunit
           [Pyrococcus horikoshii OT3]
          Length = 173

 Score =  117 bits (294), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 49/116 (42%), Positives = 79/116 (68%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E++ A  PRYD ERFG     SPR +D+++V G +TN+    ++ VY+Q P+P+ VI
Sbjct: 46  CDIEIIAALTPRYDAERFGVKLVGSPRHADILLVTGPVTNQSLERVKLVYEQTPDPKIVI 105

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           ++GSCA GG  ++ S       D ++PVD++VPGCPP  EA++YG++L  +K+ ++
Sbjct: 106 AVGSCATGGSVFYESPFTNAPLDNVIPVDVFVPGCPPRPEAILYGVVLALEKLAKM 161


>gi|14520931|ref|NP_126406.1| CO-induced hydrogenase related, subunit L [Pyrococcus abyssi GE5]
 gi|5458148|emb|CAB49637.1| NADH ubiquinone oxidoreductase subunit [Pyrococcus abyssi GE5]
          Length = 170

 Score =  117 bits (293), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 49/116 (42%), Positives = 79/116 (68%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E++ A  PRYD ERFG     SPR +D+++V G +TN+    ++ VY+Q PEP+ VI
Sbjct: 43  CDIEIIAALTPRYDAERFGVKLVGSPRHADILLVTGPVTNQSLERVKLVYEQTPEPKIVI 102

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           ++GSC  GG  ++ S       DR++PVD++VPGCPP  EA+++G++L  +K+ ++
Sbjct: 103 AIGSCPTGGSVFYESPFTNAPLDRVIPVDVFVPGCPPRPEAILHGVVLALEKLAKM 158


>gi|124485778|ref|YP_001030394.1| membrane bound hydrogenase subunit mbhJ [Methanocorpusculum
           labreanum Z]
 gi|124363319|gb|ABN07127.1| Membrane bound hydrogenase subunit mbhJ [Methanocorpusculum
           labreanum Z]
          Length = 143

 Score =  117 bits (293), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 53/116 (45%), Positives = 76/116 (65%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E++    PRYD ERFG     SPR +DV++V G +TN+MA  LRRVY QM  P+ V+
Sbjct: 24  CDIEIVATLTPRYDPERFGVKLVGSPRHADVLLVTGPVTNQMADRLRRVYAQMAGPKVVM 83

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
            +G+C   GG +  SY++    D+I+PVD+YVPGC P  EA+I G++    K+ R+
Sbjct: 84  VVGTCGQSGGVFSTSYNLAGPVDQIIPVDVYVPGCAPRPEAIINGVVTAIAKLERL 139


>gi|242280696|ref|YP_002992825.1| NADH dehydrogenase (quinone) [Desulfovibrio salexigens DSM 2638]
 gi|242123590|gb|ACS81286.1| NADH dehydrogenase (quinone) [Desulfovibrio salexigens DSM 2638]
          Length = 144

 Score =  117 bits (293), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 48/114 (42%), Positives = 76/114 (66%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E++    P YD+ERFG     +P+ +DV++V GT+ ++ A  LR +YDQMP+P+ VI
Sbjct: 27  CDIEVLACLTPLYDVERFGVVNVGNPKHADVLLVTGTVNHRNAKVLRNIYDQMPDPKGVI 86

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           ++G+C   GG +   Y+V+ G D+++PVD+YVPGCP   EA+I G++    K  
Sbjct: 87  AIGACGLSGGVFRECYNVLGGVDKVIPVDVYVPGCPAKPEAIIDGVVAALAKFE 140


>gi|315231237|ref|YP_004071673.1| NADH-ubiquinone oxidoreductase subunit B [Thermococcus barophilus
           MP]
 gi|315184265|gb|ADT84450.1| NADH-ubiquinone oxidoreductase chain B [Thermococcus barophilus MP]
          Length = 148

 Score =  117 bits (293), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 49/107 (45%), Positives = 72/107 (67%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E++    PRYD+ERFG     SPR +DV++V G +    A  LRR+Y+QMP+P+ VI
Sbjct: 24  CDIEIVALLTPRYDVERFGIKLAGSPRHADVLLVTGAIPRDFADKLRRIYEQMPDPKAVI 83

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171
            +G+C   GG ++ SY++    D I+PVD+YVPGCPP  EA+I  ++
Sbjct: 84  VVGNCGTSGGVFYDSYNIAGPIDEIIPVDVYVPGCPPRPEAIIDAVV 130


>gi|83591661|ref|YP_425413.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit [Rhodospirillum
           rubrum ATCC 11170]
 gi|83574575|gb|ABC21126.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit [Rhodospirillum
           rubrum ATCC 11170]
          Length = 173

 Score =  117 bits (292), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 51/106 (48%), Positives = 72/106 (67%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E + A  P YD ERFG     SPR +DV++++G +T      LRR+Y+Q P P+ VI
Sbjct: 29  CDIEEVNAFTPYYDAERFGLKLVGSPRHADVLLISGPVTRTAEPRLRRLYEQTPNPKVVI 88

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGI 170
           + GSCA GGG +  SY V+ G D++VPVD Y+PGCPP  EA+++G+
Sbjct: 89  ACGSCAVGGGMWFDSYHVLGGADKVVPVDFYIPGCPPRPEAILWGV 134


>gi|154175443|ref|YP_001407625.1| hypothetical protein CCV52592_1637 [Campylobacter curvus 525.92]
 gi|112802282|gb|EAT99626.1| HsdS [Campylobacter curvus 525.92]
          Length = 274

 Score =  117 bits (292), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 54/145 (37%), Positives = 89/145 (61%), Gaps = 3/145 (2%)

Query: 28  RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLAC--CAVEMMQASMPRYDLERFGFA 85
           ++  +I     L   ++ L    R+ S+  +  G +C  C +E+  A  P +D ERFGF 
Sbjct: 5   QVPQDIKTANDLTAKLEHLKNIKRSFSVYRIDCG-SCNGCEIEIFAAITPMWDPERFGFK 63

Query: 86  PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRG 145
             A+PR +D++I +G +T +M   L R Y+  P+P+ V++ G+C + GG +H +YSV  G
Sbjct: 64  LVANPRHADILICSGPVTRQMYYPLLRAYEAAPDPKIVVAFGACGSSGGIFHDAYSVWGG 123

Query: 146 CDRIVPVDIYVPGCPPTAEALIYGI 170
            D+I+PVD+Y+PGCPP   ++IYG+
Sbjct: 124 IDKIIPVDVYIPGCPPHPASVIYGL 148


>gi|320101012|ref|YP_004176604.1| NADH-quinone oxidoreductase subunit B [Desulfurococcus mucosus DSM
           2162]
 gi|319753364|gb|ADV65122.1| NADH-quinone oxidoreductase, B subunit [Desulfurococcus mucosus DSM
           2162]
          Length = 161

 Score =  117 bits (292), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 51/114 (44%), Positives = 78/114 (68%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E++ A  P YD ERFG     S R  D+++V G +T K    L+R+Y+QMP P++VI
Sbjct: 35  CDIEVLAAITPLYDPERFGVRLAPSIRHGDILVVTGAVTKKSGERLKRLYEQMPCPKFVI 94

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           ++G+CA  GG +  SY+V+ G D++VPV +Y+PGCPP  EA++ GI+ L K++ 
Sbjct: 95  AVGACACSGGVFSKSYTVLAGADKVVPVSMYIPGCPPRPEAILDGIVKLLKRVE 148


>gi|332701743|ref|ZP_08421831.1| NADH-quinone oxidoreductase, B subunit [Desulfovibrio africanus
           str. Walvis Bay]
 gi|332551892|gb|EGJ48936.1| NADH-quinone oxidoreductase, B subunit [Desulfovibrio africanus
           str. Walvis Bay]
          Length = 179

 Score =  116 bits (291), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 48/112 (42%), Positives = 75/112 (66%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E +    P YD+ERFG     +P+ +DV++V GT+  +    L+ +Y+QMP P+ V+
Sbjct: 29  CDIETLAVLTPLYDVERFGIINVGNPKHADVLLVTGTVNYRNQHVLKTIYEQMPHPKAVV 88

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKK 176
           ++G+C   GG +   Y+VV G DR++PVD+YVPGCPP  EA+I G++L  +K
Sbjct: 89  AIGACGLSGGVFRDCYNVVGGVDRVIPVDVYVPGCPPKPEAIIDGVVLGLEK 140


>gi|260575431|ref|ZP_05843430.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Rhodobacter sp. SW2]
 gi|259022351|gb|EEW25648.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Rhodobacter sp. SW2]
          Length = 177

 Score =  116 bits (291), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 55/120 (45%), Positives = 76/120 (63%), Gaps = 3/120 (2%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E+   S P YDLERFG    ASPR +DV++V G +T  MA AL R Y   PEP++V+
Sbjct: 58  CELEINALSNPYYDLERFGLHFVASPRHADVLLVTGPVTRNMAEALERTYAATPEPKWVV 117

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           + G CA  GG +  SY++V G   ++PVD+++PGCPP   AL+ G+L L   I R G  +
Sbjct: 118 ACGDCARDGGCFAGSYAIVGGVAAVLPVDLHIPGCPPNPTALLQGLLAL---IERAGTAR 174


>gi|46578848|ref|YP_009656.1| ech hydrogenase subunit EchC [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120603546|ref|YP_967946.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Desulfovibrio
           vulgaris DP4]
 gi|46448260|gb|AAS94915.1| Ech hydrogenase, subunit EchC, putative [Desulfovibrio vulgaris
           str. Hildenborough]
 gi|120563775|gb|ABM29519.1| ech hydrogenase subunit C [Desulfovibrio vulgaris DP4]
 gi|311232712|gb|ADP85566.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfovibrio
           vulgaris RCH1]
          Length = 157

 Score =  116 bits (291), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 45/107 (42%), Positives = 75/107 (70%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E++    P +D+ERFG     +P+ +DV++V GT+ ++    L+ +YDQMP+P+ VI
Sbjct: 29  CDIEVLACLTPVFDVERFGIINVGNPKHADVLLVTGTVNHRNKKVLKNIYDQMPDPKAVI 88

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171
           ++G+C + GG +   Y+VV G D+++PVD+YVPGCP   EA+I G++
Sbjct: 89  AIGACGSSGGVFRECYNVVGGVDQVIPVDVYVPGCPAKPEAIIDGVV 135


>gi|182414281|ref|YP_001819347.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Opitutus terrae
           PB90-1]
 gi|177841495|gb|ACB75747.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Opitutus terrae
           PB90-1]
          Length = 279

 Score =  116 bits (291), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 52/115 (45%), Positives = 75/115 (65%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C VE+   S P YDLERFG    ASPR +D+++V G +T  M  ALR+ YD  PEPR V+
Sbjct: 164 CEVEINALSGPIYDLERFGIHLVASPRHADMLLVTGPVTRNMELALRKTYDATPEPRLVV 223

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           ++G+C   GG +  +Y+     D ++PVD+Y+PGCPP   AL++GILL   ++ +
Sbjct: 224 AVGACGCSGGMFGRNYATCGSVDSVLPVDVYIPGCPPNPFALLHGILLAVGRLEK 278


>gi|34558135|ref|NP_907950.1| hydrogenase-Ni,Fe-hydrogenase III small subunit [Wolinella
           succinogenes DSM 1740]
 gi|34483853|emb|CAE10850.1| HYDROGENASE-Ni,Fe-hydrogenase III small subunit [Wolinella
           succinogenes]
          Length = 276

 Score =  116 bits (291), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 48/120 (40%), Positives = 83/120 (69%), Gaps = 4/120 (3%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E+  A  P +D ERFGF   A+PR +D+++  G +T +M   L R Y+  P+P+ V+
Sbjct: 43  CEIEIFAAITPLWDPERFGFKLVANPRHADILLCTGPVTRQMYYPLLRAYEAAPDPKLVV 102

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKKIRRV 180
           ++G+C + GG ++ +YSV+ G D+I+PVD+Y+PGCPP   ++IYG+     ++++K++RV
Sbjct: 103 ALGACGSTGGIFYDAYSVLSGIDKIIPVDVYIPGCPPHPASIIYGLTTALGVMEQKLQRV 162


>gi|73669936|ref|YP_305951.1| ech hydrogenase subunit C [Methanosarcina barkeri str. Fusaro]
 gi|72397098|gb|AAZ71371.1| ech hydrogenase subunit C [Methanosarcina barkeri str. Fusaro]
          Length = 163

 Score =  116 bits (290), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 52/124 (41%), Positives = 84/124 (67%), Gaps = 6/124 (4%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E++    P YD ERFG     +P+Q+D+M+V G +  K  + L  +Y+Q+P+P+ VI
Sbjct: 20  CDIEVIACLTPLYDAERFGVLNIGTPKQADIMVVTGAVNYKNVNVLINIYNQIPDPKVVI 79

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKKIRRV 180
           ++G+CA+ GG +H  Y+V+ G D+++PVDIYVPGC P  EA++ GI+    +L+ K +R 
Sbjct: 80  AVGACASTGGIFHSCYNVIGGVDQVIPVDIYVPGCCPRPEAILDGIIAALPILEDKKKR- 138

Query: 181 GNVK 184
            N+K
Sbjct: 139 -NIK 141


>gi|303327574|ref|ZP_07358015.1| carbon monoxide-induced hydrogenase, CooL subunit [Desulfovibrio
           sp. 3_1_syn3]
 gi|302862514|gb|EFL85447.1| carbon monoxide-induced hydrogenase, CooL subunit [Desulfovibrio
           sp. 3_1_syn3]
          Length = 187

 Score =  116 bits (290), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 53/138 (38%), Positives = 86/138 (62%), Gaps = 7/138 (5%)

Query: 37  GFLVTSVDQLVTWARTGSLMWMTFGLACCA---VEMMQASMPRYDLERFGFAPRASPRQS 93
           GFL    D ++  +R  S   + F    C    +E++    P YD+ERFG     +P+ +
Sbjct: 2   GFL----DAMIKRSRLKSPWIIHFDCGSCNGCDIEVLACLTPMYDVERFGVVNTGNPKHA 57

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD 153
           DV++V GT+ ++    LR++YDQMPEP+ V+S+G+C   GG +  SY+++ G   ++PVD
Sbjct: 58  DVLLVTGTVNHRNRHVLRQIYDQMPEPKAVVSIGACNLSGGVFKDSYNILNGAYNVIPVD 117

Query: 154 IYVPGCPPTAEALIYGIL 171
           ++VPGCPP  EA+I G++
Sbjct: 118 VFVPGCPPKPEAIIDGVV 135


>gi|254168030|ref|ZP_04874878.1| NADH-quinone oxidoreductase, B subunit subfamily [Aciduliprofundum
           boonei T469]
 gi|254168134|ref|ZP_04874981.1| NADH-quinone oxidoreductase, B subunit subfamily [Aciduliprofundum
           boonei T469]
 gi|289596054|ref|YP_003482750.1| NADH-quinone oxidoreductase, B subunit [Aciduliprofundum boonei
           T469]
 gi|197622900|gb|EDY35468.1| NADH-quinone oxidoreductase, B subunit subfamily [Aciduliprofundum
           boonei T469]
 gi|197623073|gb|EDY35640.1| NADH-quinone oxidoreductase, B subunit subfamily [Aciduliprofundum
           boonei T469]
 gi|289533841|gb|ADD08188.1| NADH-quinone oxidoreductase, B subunit [Aciduliprofundum boonei
           T469]
          Length = 180

 Score =  116 bits (290), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 55/123 (44%), Positives = 78/123 (63%), Gaps = 1/123 (0%)

Query: 56  MWMT-FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVY 114
           +WM  F   C A+EM      RYD+ERFG  P A+PRQ+D+M+V G +  K    + RVY
Sbjct: 27  LWMIHFCTGCGAMEMPPVMTSRYDMERFGIIPMATPRQADLMLVTGYVATKTLKRIVRVY 86

Query: 115 DQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQ 174
           +QM +P+YVI+ GSC   GG Y  SY++++  D+ +PVD+Y+ GC P  EA++   L L 
Sbjct: 87  EQMQDPKYVIAFGSCPINGGIYWDSYNIIKRLDKYIPVDLYIAGCMPRPEAIMDAFLKLM 146

Query: 175 KKI 177
           K I
Sbjct: 147 KDI 149


>gi|332157667|ref|YP_004422946.1| NADH-ubiquinone oxidoreductase subunit [Pyrococcus sp. NA2]
 gi|331033130|gb|AEC50942.1| NADH-ubiquinone oxidoreductase subunit [Pyrococcus sp. NA2]
          Length = 172

 Score =  115 bits (289), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 48/116 (41%), Positives = 78/116 (67%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E++ A  PRYD ERFG     SPR +D+++V G +TN+    ++ VY+Q P+P+ VI
Sbjct: 46  CDIEIIAALTPRYDAERFGVKLVGSPRHADILLVTGPVTNQSLERVKLVYEQTPDPKIVI 105

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           ++GSC  GG  ++ S       D ++PVD++VPGCPP  EA++YG++L  +K+ ++
Sbjct: 106 AVGSCPTGGSVFYESPFTNAPLDNVIPVDVFVPGCPPRPEAILYGVVLALEKLAKI 161


>gi|119719977|ref|YP_920472.1| NADH-quinone oxidoreductase, B subunit [Thermofilum pendens Hrk 5]
 gi|119525097|gb|ABL78469.1| NADH-quinone oxidoreductase, B subunit [Thermofilum pendens Hrk 5]
          Length = 142

 Score =  115 bits (289), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 48/106 (45%), Positives = 73/106 (68%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E + A  PR+DLER G     SPR +DV++V G +T   A AL+ +YDQ+PEPR V+
Sbjct: 25  CDIEFVAALTPRFDLERLGVQLVPSPRHADVLVVTGPVTRASADALKTIYDQVPEPRIVV 84

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGI 170
           + G+CA  GG +   Y+V+ G D+++PVD+ +PGCPP  E+L++ +
Sbjct: 85  AFGTCACSGGVFSNCYNVLGGADKVLPVDVKIPGCPPKPESLLHAL 130


>gi|67968299|dbj|BAE00199.1| NADH dehydrogenase subunit K [Selaginella uncinata]
          Length = 215

 Score =  115 bits (289), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 57/147 (38%), Positives = 82/147 (55%), Gaps = 1/147 (0%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
           T    + T+ +     AR  S     +G +CC  E       R D +R G  PR+SPRQ+
Sbjct: 38  TPDSIIPTTPNDFTNRARLPSSRPPPYGTSCCFTEFAPLIGSRSDSDRHGSVPRSSPRQA 97

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS-YSVVRGCDRIVPV 152
           D++I AGT T KMA +L R Y+Q PEP++ I+MG+C   GG      +S VRG D+ +P 
Sbjct: 98  DLIITAGTATTKMAPSLVRSYEQTPEPKHAIAMGACTVTGGMLSTDPHSTVRGVDKSIPA 157

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179
           D Y PG PP  EA++   +  ++K+ R
Sbjct: 158 DTYPPGRPPKPEAIVDATIKPREKVSR 184


>gi|18977804|ref|NP_579161.1| mbh10 NADH dehydrogenase subunit [Pyrococcus furiosus DSM 3638]
 gi|18893553|gb|AAL81556.1| mbh10 NADH dehydrogenase subunit (like cCoL, EchC, HycH)
           [Pyrococcus furiosus DSM 3638]
          Length = 167

 Score =  115 bits (289), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 48/116 (41%), Positives = 79/116 (68%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E++ A  PRYD ERFG     SPR +D+++V G +TN+    ++ VY+Q P+P+ VI
Sbjct: 38  CDIEIIAALTPRYDAERFGVKLVGSPRHADILLVTGPVTNQSLERVKLVYEQTPDPKIVI 97

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           ++G+C  GG  ++ S       DRI+PVD++VPGCPP  EA+++G++L  +K+ ++
Sbjct: 98  AIGACPTGGSVFYESPFTNAPLDRIIPVDVFVPGCPPRPEAILHGVVLALEKLAKM 153


>gi|157164480|ref|YP_001466173.1| hydrogenase-4 component I [Campylobacter concisus 13826]
 gi|112801502|gb|EAT98846.1| hydrogenase-4 component I [Campylobacter concisus 13826]
          Length = 274

 Score =  115 bits (288), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 53/145 (36%), Positives = 89/145 (61%), Gaps = 3/145 (2%)

Query: 28  RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLAC--CAVEMMQASMPRYDLERFGFA 85
           ++  +I     L   ++ L    R+ S+  +  G +C  C +E+  A  P +D ERFGF 
Sbjct: 5   QVPEDIKTANDLTAKLEHLKNIKRSFSVYRIDCG-SCNGCEIEIFAAITPMWDPERFGFK 63

Query: 86  PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRG 145
             A+PR +D+++ +G +T +M   L R Y+  P+P+ V++ G+C + GG +H +YSV  G
Sbjct: 64  LVANPRHADILLCSGPVTRQMYYPLLRAYEAAPDPKIVVAFGACGSTGGIFHDAYSVWGG 123

Query: 146 CDRIVPVDIYVPGCPPTAEALIYGI 170
            D+I+PVD+Y+PGCPP   ++IYG+
Sbjct: 124 IDKIIPVDVYIPGCPPHPASVIYGL 148


>gi|83309305|ref|YP_419569.1| Ni,Fe-hydrogenase III small subunit [Magnetospirillum magneticum
           AMB-1]
 gi|82944146|dbj|BAE49010.1| Ni,Fe-hydrogenase III small subunit [Magnetospirillum magneticum
           AMB-1]
          Length = 178

 Score =  115 bits (288), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 50/113 (44%), Positives = 74/113 (65%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E+   + P YDLERFG    ASPR +DV++V G +T  M  ALRR  +  PEPR+++
Sbjct: 63  CELEIHAVNHPIYDLERFGIRFVASPRHADVLLVTGPVTRNMEEALRRTVEATPEPRWIV 122

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
           +MG C   GG +  SY+VV G   +VPVD+++PGCPP+   ++ G+L L + +
Sbjct: 123 AMGDCGKDGGCFAGSYAVVGGVSDVVPVDLHIPGCPPSPRQILAGLLALLETV 175


>gi|118474722|ref|YP_891335.1| hydrogenase-Ni,Fe-hydrogenase III small subunit [Campylobacter
           fetus subsp. fetus 82-40]
 gi|118413948|gb|ABK82368.1| hydrogenase-ni,fe-hydrogenase III small subunit [Campylobacter
           fetus subsp. fetus 82-40]
          Length = 271

 Score =  115 bits (288), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 56/157 (35%), Positives = 94/157 (59%), Gaps = 7/157 (4%)

Query: 29  ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLAC--CAVEMMQASMPRYDLERFGFAP 86
           +  +I     L + ++ L    R+ S+  +  G +C  C +E+  A  P +D ERFGF  
Sbjct: 4   VPDDIQRSNDLNSKLNLLKNIKRSFSVFRIDCG-SCNGCEIEIFAALSPLWDPERFGFKL 62

Query: 87  RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGC 146
            A+PR +D++IV+G +T +M   L R Y+  P+P+ V+  G+C   GG +H SY+V  G 
Sbjct: 63  VANPRHADILIVSGPITRQMYYPLLRAYEATPDPKIVVGFGACGVSGGIFHDSYAVWGGA 122

Query: 147 DRIVPVDIYVPGCPPTAEALIYGIL----LLQKKIRR 179
           D+I+PVD++VPGCPP   ++IY +     L+++K+ +
Sbjct: 123 DKILPVDVFVPGCPPHPASIIYALATAVGLIEQKLEK 159


>gi|319789460|ref|YP_004151093.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Thermovibrio
           ammonificans HB-1]
 gi|317113962|gb|ADU96452.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Thermovibrio
           ammonificans HB-1]
          Length = 177

 Score =  115 bits (288), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 50/117 (42%), Positives = 77/117 (65%)

Query: 55  LMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVY 114
           L + T     C +E++    P+YDLERFG   R +P+QSDV+IV G +T +    L R+Y
Sbjct: 14  LHYNTGSCNGCDIEILACLAPKYDLERFGILNRGNPKQSDVLIVTGPVTKRAKERLLRLY 73

Query: 115 DQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171
            +MPEP+ V+++G+CA  GG + + Y+V  G D ++PVD+YVPGC    E++I G++
Sbjct: 74  YEMPEPKVVVAVGACACTGGVFRHMYNVENGVDSVIPVDVYVPGCAARPESIIDGVI 130


>gi|288575153|ref|ZP_06393510.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Dethiosulfovibrio
           peptidovorans DSM 11002]
 gi|288570894|gb|EFC92451.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Dethiosulfovibrio
           peptidovorans DSM 11002]
          Length = 151

 Score =  115 bits (287), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 55/124 (44%), Positives = 80/124 (64%), Gaps = 7/124 (5%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E++    PRYD+ERFG     +PR +DV++V G +T  M   L R+Y Q+P+P+ VI
Sbjct: 27  CDIEIVSTVSPRYDIERFGMKLTGTPRHADVLLVTGPVTRFMKEKLERIYAQIPDPKVVI 86

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYG----ILLLQKK---I 177
           ++G+CA  G  Y  SY++V   DRI+PVD+YV GCPP  EA+I G    +L L+ K   +
Sbjct: 87  AVGNCACSGDVYFKSYNLVGPVDRIIPVDVYVHGCPPRPEAIIEGAAKAVLKLEAKRAEL 146

Query: 178 RRVG 181
           R+ G
Sbjct: 147 RKAG 150


>gi|52549748|gb|AAU83597.1| F420H2-quinone oxidoreductase 45 kD subunit [uncultured archaeon
           GZfos32E4]
          Length = 788

 Score =  115 bits (287), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 61/150 (40%), Positives = 86/150 (57%), Gaps = 5/150 (3%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           I H G        L  WA   SL    F  +CC VE+       YD+ER G       RQ
Sbjct: 12  ILHSGVFTP----LRRWATKWSLWPCHFLTSCCGVELAHTGACGYDMERLGTLNMGISRQ 67

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           ++ ++V GT+T KMA ALR V++QMP+P++V  +G+C   GG +  SY++ R  D IVPV
Sbjct: 68  ANFIMVEGTITRKMARALRIVWEQMPDPKFVNVIGTCGQRGGIFWNSYNITRPSD-IVPV 126

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
           D ++PGCP T E+L+ G+  +Q+KI    N
Sbjct: 127 DFFIPGCPITPESLLRGVRAVQEKIEGRDN 156


>gi|52548540|gb|AAU82389.1| F420H2-quinone oxidoreductase 45 kD subunit [uncultured archaeon
           GZfos17C7]
          Length = 788

 Score =  115 bits (287), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 61/150 (40%), Positives = 86/150 (57%), Gaps = 5/150 (3%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           I H G        L  WA   SL    F  +CC VE+       YD+ER G       RQ
Sbjct: 12  ILHSGVFTP----LRRWATKWSLWPCHFLTSCCGVELAHTGACGYDMERLGTLNMGISRQ 67

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           ++ ++V GT+T KMA ALR V++QMP+P++V  +G+C   GG +  SY++ R  D IVPV
Sbjct: 68  ANFIMVEGTITRKMARALRIVWEQMPDPKFVNVIGTCGQRGGIFWNSYNITRPSD-IVPV 126

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
           D ++PGCP T E+L+ G+  +Q+KI    N
Sbjct: 127 DFFIPGCPITPESLLRGVRAVQEKIEGRDN 156


>gi|218886615|ref|YP_002435936.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfovibrio
           vulgaris str. 'Miyazaki F']
 gi|193479935|gb|ACF17988.1| EchC [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218757569|gb|ACL08468.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfovibrio
           vulgaris str. 'Miyazaki F']
          Length = 157

 Score =  115 bits (287), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 44/107 (41%), Positives = 74/107 (69%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E++    P +D+ERFG     +P+ +DV++V GT+ ++    L+ +YDQMP+P+ VI
Sbjct: 29  CDIEVLACLTPVFDVERFGIINVGNPKHADVLLVTGTVNHRNKKVLKNIYDQMPDPKAVI 88

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171
           ++G+C   GG +   Y+VV G D+++PVD+YVPGCP   +A+I G++
Sbjct: 89  AIGACGTSGGVFRECYNVVGGVDQVIPVDVYVPGCPAKPDAIIDGVV 135


>gi|302872081|ref|YP_003840717.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Caldicellulosiruptor
           obsidiansis OB47]
 gi|312127862|ref|YP_003992736.1| NADH ubiquinone oxidoreductase 20 kda subunit [Caldicellulosiruptor
           hydrothermalis 108]
 gi|302574940|gb|ADL42731.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Caldicellulosiruptor
           obsidiansis OB47]
 gi|311777881|gb|ADQ07367.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Caldicellulosiruptor
           hydrothermalis 108]
          Length = 154

 Score =  115 bits (287), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 48/120 (40%), Positives = 81/120 (67%), Gaps = 4/120 (3%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E++    P YD+ERFG     +P+ +D+++V+G++ ++ A  L+ +YDQMP P+ V+
Sbjct: 24  CDIEILATLTPVYDVERFGIINVGNPKHADILVVSGSVNHRNARVLKTIYDQMPHPKAVV 83

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKKIRRV 180
           ++G+CA  GG +   Y+ + G D +VPVD+YVPGC P  EA++ GIL    LL++K + +
Sbjct: 84  AIGACACSGGIFKECYNTLGGADTVVPVDVYVPGCAPRPEAIMEGILKAAQLLEEKKKNM 143


>gi|268680487|ref|YP_003304918.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Sulfurospirillum
           deleyianum DSM 6946]
 gi|268618518|gb|ACZ12883.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Sulfurospirillum
           deleyianum DSM 6946]
          Length = 274

 Score =  115 bits (287), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 54/159 (33%), Positives = 98/159 (61%), Gaps = 7/159 (4%)

Query: 28  RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLAC--CAVEMMQASMPRYDLERFGFA 85
            + S+I     L   ++ L    R+ S+  +  G +C  C +E+  A  P +D ERFGF 
Sbjct: 5   EVPSDIALANSLEEKLELLKHIGRSFSVFRIDCG-SCNGCEIEIFAAITPLWDPERFGFK 63

Query: 86  PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRG 145
             A+PR +D+++  G +T +M   L R Y+  P+P+ V+++G+C   GG ++ +YSV+ G
Sbjct: 64  LVANPRHADILLCTGPVTRQMYYPLLRAYEATPDPKIVVALGACGATGGIFYDAYSVLSG 123

Query: 146 CDRIVPVDIYVPGCPPTAEALIYGIL----LLQKKIRRV 180
            D+I+PVD+Y+PGCPP   ++IYG+     ++++++++V
Sbjct: 124 IDKIIPVDVYIPGCPPHPASIIYGLTTALGVMEQRLQKV 162


>gi|269104123|ref|ZP_06156819.1| formate hydrogenlyase subunit 7 [Photobacterium damselae subsp.
           damselae CIP 102761]
 gi|268160763|gb|EEZ39260.1| formate hydrogenlyase subunit 7 [Photobacterium damselae subsp.
           damselae CIP 102761]
          Length = 287

 Score =  115 bits (287), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 53/122 (43%), Positives = 74/122 (60%), Gaps = 4/122 (3%)

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           G   C +E+  A+ P +D ERFG    ASPR +D+++  G +T  M +   R Y+  P+P
Sbjct: 48  GCNACEIEIFAATTPVFDAERFGIKVVASPRHADILLFTGAVTRAMRAPALRAYEAAPDP 107

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176
           + VIS G+C   GG +H  Y V  G D+IVPVD+Y+PGCPPT  A IYG      LL +K
Sbjct: 108 KIVISYGACGCDGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATIYGFAVALGLLDQK 167

Query: 177 IR 178
           ++
Sbjct: 168 LK 169


>gi|254173172|ref|ZP_04879845.1| hydrogenase-4 component I [Thermococcus sp. AM4]
 gi|214032581|gb|EEB73410.1| hydrogenase-4 component I [Thermococcus sp. AM4]
          Length = 173

 Score =  115 bits (287), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 48/116 (41%), Positives = 77/116 (66%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E++ A  PRYD ERFG     SPR +D+++V G +TN+    ++ VY+Q PEP+ VI
Sbjct: 46  CDIEIIAALTPRYDAERFGVKLVGSPRHADILLVTGPVTNQSLERVKLVYEQTPEPKIVI 105

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           ++GSC  GG  ++ S         ++PVD+YVPGCPP  EA+++G++L  +K+ ++
Sbjct: 106 AVGSCPTGGSVFYESPFTNAPLSNVIPVDVYVPGCPPRPEAILHGVVLALEKLAKI 161


>gi|220904936|ref|YP_002480248.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
 gi|219869235|gb|ACL49570.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
          Length = 185

 Score =  114 bits (286), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 49/132 (37%), Positives = 84/132 (63%), Gaps = 3/132 (2%)

Query: 43  VDQLVTWARTGSLMWMTFGLACCA---VEMMQASMPRYDLERFGFAPRASPRQSDVMIVA 99
           VD+++  +R  S   + F    C    +E++    P YD+ERFG     +P+ +DV++V 
Sbjct: 4   VDKMIKRSRLKSPWIVHFDCGSCNGCDIEVLACLTPMYDVERFGVVNAGNPKHADVLLVT 63

Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGC 159
           GT+ ++    L+++Y+QMP P+ VIS+G+C   GG +  +Y+V+ G   ++PVD++VPGC
Sbjct: 64  GTVNHRNRHVLKQIYEQMPSPKAVISLGACNLSGGVFKDTYNVLNGAHNVIPVDVFVPGC 123

Query: 160 PPTAEALIYGIL 171
           PP  EA+I G++
Sbjct: 124 PPKPEAIIDGVV 135


>gi|89074820|ref|ZP_01161274.1| hydrogenase-4 component I [Photobacterium sp. SKA34]
 gi|89049395|gb|EAR54957.1| hydrogenase-4 component I [Photobacterium sp. SKA34]
          Length = 277

 Score =  114 bits (286), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 53/122 (43%), Positives = 75/122 (61%), Gaps = 4/122 (3%)

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           G   C +E+  A+ P +D ERFG    ASPR +D+++  G++T  M +   R Y+  P+P
Sbjct: 48  GCNACEIEIFAATTPVFDTERFGIKIVASPRHADILLYTGSVTRAMRAPALRAYEAAPDP 107

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176
           + VIS G+C   GG +H  Y V  G D+IVPVD+Y+PGCPPT  A IYG      LL +K
Sbjct: 108 KIVISYGACGCDGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATIYGFAVALGLLDQK 167

Query: 177 IR 178
           ++
Sbjct: 168 LK 169


>gi|221041900|dbj|BAH12627.1| unnamed protein product [Homo sapiens]
          Length = 148

 Score =  114 bits (286), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 64/112 (57%), Positives = 79/112 (70%), Gaps = 8/112 (7%)

Query: 6   VNQKI-ISGQSSC--SLEKVDADFSRISSEITHKG-FLVTSVDQLVTWARTGSLMWMTFG 61
           V+Q + I G SS   +L K  A    ++ + + +G ++V  +D LV WAR  SL  MTFG
Sbjct: 30  VHQSVAIDGPSSTQPALPKARA----VAPKPSSRGEYVVAKLDDLVNWARRSSLWPMTFG 85

Query: 62  LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRV 113
           LACCAVEMM  + PRYD++RFG   RASPRQSDVMIVAGTLTNKMA ALR+V
Sbjct: 86  LACCAVEMMHMAAPRYDMDRFGVVFRASPRQSDVMIVAGTLTNKMAPALRKV 137


>gi|88603826|ref|YP_504004.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Methanospirillum
           hungatei JF-1]
 gi|88189288|gb|ABD42285.1| Membrane bound hydrogenase subunit mbhJ [Methanospirillum hungatei
           JF-1]
          Length = 145

 Score =  114 bits (286), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 50/116 (43%), Positives = 79/116 (68%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E++ A  PRYD ERFG     SPR +DV++V G +T++M   ++RVY+QM  P+ V+
Sbjct: 24  CDIEIVAALCPRYDPERFGIKLVGSPRHADVLLVTGPVTHQMRDRVKRVYEQMAAPKVVM 83

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
            +G+C   GG ++ SY++    D+++PVD+YVPGC P  EA+IYG++    K+ R+
Sbjct: 84  CVGTCGQSGGVFYDSYNLDGPIDQVIPVDVYVPGCAPRPEAIIYGVVQAIAKLERL 139


>gi|90578223|ref|ZP_01234034.1| hydrogenase-4 component I [Vibrio angustum S14]
 gi|90441309|gb|EAS66489.1| hydrogenase-4 component I [Vibrio angustum S14]
          Length = 277

 Score =  114 bits (286), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 56/141 (39%), Positives = 81/141 (57%), Gaps = 6/141 (4%)

Query: 44  DQLVTWARTGSLMWMTF--GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGT 101
           D L+   R  + ++     G   C +E+  A+ P +D ERFG    ASPR +D+++  G 
Sbjct: 29  DALIKQIRRSAYVYRVDCGGCNACEIEIFAATTPVFDTERFGIKVVASPRHADILLFTGA 88

Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP 161
           +T  M +   R Y+  P+P+ VIS G+C   GG +H  Y V  G D+IVPVD+Y+PGCPP
Sbjct: 89  VTRAMRAPALRAYEAAPDPKIVISYGACGCDGGIFHDLYCVWGGTDKIVPVDVYIPGCPP 148

Query: 162 TAEALIYGIL----LLQKKIR 178
           T  A IYG      LL +K++
Sbjct: 149 TPAATIYGFAVALGLLDQKLK 169


>gi|170289385|ref|YP_001739623.1| NADH-quinone oxidoreductase, B subunit [Thermotoga sp. RQ2]
 gi|170176888|gb|ACB09940.1| NADH-quinone oxidoreductase, B subunit [Thermotoga sp. RQ2]
          Length = 178

 Score =  114 bits (286), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 52/129 (40%), Positives = 79/129 (61%)

Query: 51  RTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASAL 110
           R+ S+  + +   C AVE+  +   R+D+ERFG AP A+PRQ+D++++ G L  K    +
Sbjct: 15  RSRSIWMLHYCTGCGAVELPPSMTSRFDMERFGIAPMATPRQADILLITGYLNTKTLRRV 74

Query: 111 RRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGI 170
              Y+QMP+P+YV+  GSC   GG Y  SY+ V   D  +PVD+Y+ GC P  EA++   
Sbjct: 75  IYTYEQMPDPKYVVGFGSCTINGGIYFDSYATVNRLDYYIPVDVYIAGCMPRPEAILEAF 134

Query: 171 LLLQKKIRR 179
             L +KIR+
Sbjct: 135 NYLMEKIRK 143


>gi|224538211|ref|ZP_03678750.1| hypothetical protein BACCELL_03102 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224520179|gb|EEF89284.1| hypothetical protein BACCELL_03102 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 104

 Score =  114 bits (286), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 47/85 (55%), Positives = 68/85 (80%)

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD 153
           D+++V GT+TNKMA  L+R+YDQMP+P+YV+++G CA  GG +  SY VV G D+I+PVD
Sbjct: 1   DMIMVCGTITNKMAPVLKRLYDQMPDPKYVVAVGGCAVSGGPFKKSYHVVNGVDKILPVD 60

Query: 154 IYVPGCPPTAEALIYGILLLQKKIR 178
           +Y+PGCPP  EA  YG++ LQ+K++
Sbjct: 61  VYIPGCPPRPEAFYYGMMQLQRKVK 85


>gi|118579032|ref|YP_900282.1| NADH-quinone oxidoreductase subunit B [Pelobacter propionicus DSM
           2379]
 gi|118501742|gb|ABK98224.1| ech hydrogenase subunit C [Pelobacter propionicus DSM 2379]
          Length = 164

 Score =  114 bits (286), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 51/140 (36%), Positives = 87/140 (62%), Gaps = 3/140 (2%)

Query: 43  VDQLVTWARTGS---LMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVA 99
           +D++V WAR  S   + + T     C +E++    P +D+ERFG   + +PR +DV++ +
Sbjct: 4   IDRIVNWARIKSPWVIHYNTGACNGCDIEIVATLTPVFDIERFGCQLKGTPRHADVLLCS 63

Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGC 159
           G +T +    + R+Y+QMPEP++V+++GSCA  GG +   Y+++ G D ++PV  YVPGC
Sbjct: 64  GPVTRQSRDRIIRIYEQMPEPKFVVAVGSCACSGGVFQGCYNILGGIDSVIPVSAYVPGC 123

Query: 160 PPTAEALIYGILLLQKKIRR 179
               EA+I G++ L   + R
Sbjct: 124 AARPEAIIDGVVKLLTTLER 143


>gi|15643970|ref|NP_229019.1| NADH dehydrogenase subunit B [Thermotoga maritima MSB8]
 gi|4981767|gb|AAD36289.1|AE001778_10 NADH dehydrogenase, putative [Thermotoga maritima MSB8]
          Length = 178

 Score =  114 bits (285), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 52/129 (40%), Positives = 79/129 (61%)

Query: 51  RTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASAL 110
           R+ S+  + +   C AVE+  +   R+D+ERFG AP A+PRQ+D++++ G L  K    +
Sbjct: 15  RSRSIWMLHYCTGCGAVELPPSMTSRFDMERFGIAPMATPRQADILLITGYLNTKTLRRV 74

Query: 111 RRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGI 170
              Y+QMP+P+YV+  GSC   GG Y  SY+ V   D  +PVD+Y+ GC P  EA++   
Sbjct: 75  IYTYEQMPDPKYVVGFGSCTINGGIYFDSYATVNRLDYYIPVDVYIAGCMPRPEAILEAF 134

Query: 171 LLLQKKIRR 179
             L +KIR+
Sbjct: 135 NYLMEKIRK 143


>gi|317486369|ref|ZP_07945197.1| NADH ubiquinone oxidoreductase [Bilophila wadsworthia 3_1_6]
 gi|316922358|gb|EFV43616.1| NADH ubiquinone oxidoreductase [Bilophila wadsworthia 3_1_6]
          Length = 163

 Score =  114 bits (285), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 47/114 (41%), Positives = 75/114 (65%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E++    P +D+ERFG      P+ +DV++V GT+  +    L+ +YDQMPEP+ VI
Sbjct: 35  CDIEVLACLTPVFDVERFGIVNIGDPKHADVLLVTGTVNQRNKDVLKNLYDQMPEPKAVI 94

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           ++G+CA  GG +   Y+VV G D ++PVD+YVPGC    EA+I G++L  + ++
Sbjct: 95  AIGACACTGGVFQDCYNVVGGVDHVIPVDVYVPGCAAKPEAIIDGVVLALEVVK 148


>gi|330448643|ref|ZP_08312291.1| hydrogenase 3 and formate hydrogenlyase complex, HycG subunit
           [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328492834|dbj|GAA06788.1| hydrogenase 3 and formate hydrogenlyase complex, HycG subunit
           [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 277

 Score =  114 bits (285), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 56/141 (39%), Positives = 81/141 (57%), Gaps = 6/141 (4%)

Query: 44  DQLVTWARTGSLMWMTF--GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGT 101
           D L+   R  + ++     G   C +E+  A+ P +D ERFG    ASPR +D+++  G 
Sbjct: 29  DALIKQIRRSAYVYRVDCGGCNACEIEIFAATTPVFDAERFGIKVVASPRHADILLFTGA 88

Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP 161
           +T  M +   R Y+  P+P+ VIS G+C   GG +H  Y V  G D+IVPVD+Y+PGCPP
Sbjct: 89  VTRAMRAPALRAYEAAPDPKIVISYGACGCDGGIFHDLYCVWGGTDKIVPVDVYIPGCPP 148

Query: 162 TAEALIYGIL----LLQKKIR 178
           T  A IYG      LL +K++
Sbjct: 149 TPAATIYGFAVALGLLDQKLK 169


>gi|222100331|ref|YP_002534899.1| NADH dehydrogenase [Thermotoga neapolitana DSM 4359]
 gi|221572721|gb|ACM23533.1| NADH dehydrogenase [Thermotoga neapolitana DSM 4359]
          Length = 178

 Score =  114 bits (285), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 52/129 (40%), Positives = 79/129 (61%)

Query: 51  RTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASAL 110
           R+ S+  + +   C AVE+  +   R+D+ERFG AP A+PRQ+D++++ G L  K    +
Sbjct: 15  RSRSIWMLHYCTGCGAVELPPSMTSRFDMERFGIAPMATPRQADILLITGYLNTKTLRRV 74

Query: 111 RRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGI 170
              Y+QMP+P+YV+  GSC   GG Y  SY+ V   D  +PVD+Y+ GC P  EA++   
Sbjct: 75  IYTYEQMPDPKYVVGFGSCTINGGIYFDSYATVNRLDYYIPVDVYIAGCMPRPEAILEAF 134

Query: 171 LLLQKKIRR 179
             L +KIR+
Sbjct: 135 NYLMEKIRK 143


>gi|146296549|ref|YP_001180320.1| NADH ubiquinone oxidoreductase, 20 kDa subunit
           [Caldicellulosiruptor saccharolyticus DSM 8903]
 gi|145410125|gb|ABP67129.1| ech hydrogenase subunit C [Caldicellulosiruptor saccharolyticus DSM
           8903]
          Length = 154

 Score =  114 bits (285), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 46/120 (38%), Positives = 81/120 (67%), Gaps = 4/120 (3%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E++    P YD+ERFG     +P+ +D+++V+G++ ++ A  L+ +YDQMP P+ V+
Sbjct: 24  CDIEILSTLTPVYDVERFGIINVGNPKHADILVVSGSVNHRNARVLKNIYDQMPHPKAVV 83

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKKIRRV 180
           ++G+CA  GG +   Y+ + G D ++PVD+YVPGC P  EA++ GIL    +L++K + +
Sbjct: 84  AIGACACSGGIFKECYNTLGGADTVIPVDVYVPGCAPRPEAIMEGILKAAEILEEKKKNM 143


>gi|169831261|ref|YP_001717243.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Candidatus
           Desulforudis audaxviator MP104C]
 gi|169638105|gb|ACA59611.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Candidatus
           Desulforudis audaxviator MP104C]
          Length = 141

 Score =  114 bits (285), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 46/116 (39%), Positives = 77/116 (66%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E++    P YD+ERFG     +P+ +D+++V G    + +  L+ +YDQMPEP+ V+
Sbjct: 25  CDIEILACLTPYYDVERFGILNIGNPKHADLLVVTGPANMRCSRVLKNLYDQMPEPKLVM 84

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           ++G+CA  GG +H  Y+++ G DR++PVD+YVPGC    EA+I G++L   K+  +
Sbjct: 85  AVGACAATGGVFHNCYNILGGIDRVIPVDVYVPGCAARPEAIIDGVVLALDKLSNI 140


>gi|312793271|ref|YP_004026194.1| NADH ubiquinone oxidoreductase 20 kda subunit [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312180411|gb|ADQ40581.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Caldicellulosiruptor
           kristjanssonii 177R1B]
          Length = 154

 Score =  114 bits (285), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 47/120 (39%), Positives = 81/120 (67%), Gaps = 4/120 (3%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E++    P YD+ERFG     +P+ +D+++V+G++ ++ A  L+ +Y+QMP P+ V+
Sbjct: 24  CDIEILATLTPVYDVERFGIINVGNPKHADILVVSGSVNHRNARVLKTIYEQMPHPKAVV 83

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKKIRRV 180
           ++G+CA  GG +   Y+ + G D +VPVD+YVPGC P  EA++ GIL    LL++K + +
Sbjct: 84  AIGACACSGGIFKECYNTLGGADTVVPVDVYVPGCAPRPEAIMEGILKAAQLLEEKKKNI 143


>gi|282163150|ref|YP_003355535.1| Ech hydrogenase subunit C [Methanocella paludicola SANAE]
 gi|282155464|dbj|BAI60552.1| Ech hydrogenase subunit C [Methanocella paludicola SANAE]
          Length = 156

 Score =  114 bits (284), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 54/126 (42%), Positives = 80/126 (63%), Gaps = 4/126 (3%)

Query: 59  TFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMP 118
           T G   C +E++    PRYD+ RFG     +P+ +DVM+V G +T K    ++ +YDQMP
Sbjct: 19  TGGCNGCDLEILACLTPRYDVSRFGVMSTGNPKHADVMLVVGPVTIKYKEIIKNLYDQMP 78

Query: 119 EPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILL----LQ 174
           +P+ VIS+G+CA+ GG Y   Y    G D++VPVD+YVPGC    EA+I G++L    L 
Sbjct: 79  DPKVVISVGTCASTGGIYQGCYGHCGGVDKVVPVDVYVPGCNVRPEAVIDGLVLALDILN 138

Query: 175 KKIRRV 180
           +K R++
Sbjct: 139 EKERKI 144


>gi|126460561|ref|YP_001056839.1| NADH-quinone oxidoreductase, B subunit [Pyrobaculum calidifontis
           JCM 11548]
 gi|126250282|gb|ABO09373.1| NADH-quinone oxidoreductase, B subunit [Pyrobaculum calidifontis
           JCM 11548]
          Length = 192

 Score =  114 bits (284), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 60/137 (43%), Positives = 88/137 (64%), Gaps = 1/137 (0%)

Query: 42  SVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGT 101
            ++ L  W    SL  +    +CC VE+   S P +D ER+G  P  + RQS+V++V GT
Sbjct: 16  KLEPLFKWGVRWSLWPVHLVTSCCGVEVAHTSAPGFDAERWGVLPFHTMRQSNVILVEGT 75

Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP 161
           +T KMA  L++VY+QMPEP++VI+MG+CA  GG +  SY VV+    +  VD+Y+ GCPP
Sbjct: 76  VTKKMAKVLKQVYEQMPEPKFVIAMGACAVRGGLFWNSYHVVQVDTVVP-VDVYIAGCPP 134

Query: 162 TAEALIYGILLLQKKIR 178
           T EA+I   ++L  KI+
Sbjct: 135 TPEAVIRAFIMLHNKIK 151


>gi|296272277|ref|YP_003654908.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Arcobacter
           nitrofigilis DSM 7299]
 gi|296096452|gb|ADG92402.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Arcobacter
           nitrofigilis DSM 7299]
          Length = 271

 Score =  114 bits (284), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 51/144 (35%), Positives = 88/144 (61%), Gaps = 3/144 (2%)

Query: 29  ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLAC--CAVEMMQASMPRYDLERFGFAP 86
           +  EI +   L   ++ L    R+ ++  +  G +C  C +E+  A  P +D ER GF  
Sbjct: 7   VPEEIENSNTLEAKLEHLKNIKRSFNVYRVDCG-SCNGCEIEVFAAITPMWDPERLGFKL 65

Query: 87  RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGC 146
            ASPR +D+++ +G +T +M   L R Y+  P+P+ V+++G+C + GG +H +YSV  G 
Sbjct: 66  VASPRHADILLCSGPVTRQMYYPLLRAYEATPDPKVVVAIGACGSSGGIFHDAYSVWGGI 125

Query: 147 DRIVPVDIYVPGCPPTAEALIYGI 170
           D+++PVD+Y+PGCPP    +I+G+
Sbjct: 126 DKVIPVDVYIPGCPPHPATIIHGL 149


>gi|240102096|ref|YP_002958404.1| membrane bound hydrogenase, MbhJ subunit (MbhJ) [Thermococcus
           gammatolerans EJ3]
 gi|239909649|gb|ACS32540.1| membrane bound hydrogenase, MbhJ subunit (MbhJ) [Thermococcus
           gammatolerans EJ3]
          Length = 174

 Score =  113 bits (283), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 46/116 (39%), Positives = 78/116 (67%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E++    PRYD ERFG     SPR +D+++V G +TN+    ++ VY+Q P+P+ V+
Sbjct: 47  CDIEIIAILTPRYDAERFGVKLVGSPRHADILLVTGPVTNQSLERVKLVYEQTPDPKIVV 106

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           ++G+CA GGG ++ S         ++PVD+YVPGCPP  EA+++G++L  +K+ ++
Sbjct: 107 AVGACATGGGVFYESPFTNAPLSNVIPVDVYVPGCPPRPEAILHGVVLALEKLAKI 162


>gi|297526163|ref|YP_003668187.1| NADH-quinone oxidoreductase, B subunit [Staphylothermus hellenicus
           DSM 12710]
 gi|297255079|gb|ADI31288.1| NADH-quinone oxidoreductase, B subunit [Staphylothermus hellenicus
           DSM 12710]
          Length = 179

 Score =  113 bits (283), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 56/132 (42%), Positives = 78/132 (59%)

Query: 46  LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNK 105
              W R+ S+  + +  AC A+E+    +   D ER+G     SPRQ+DV++V G +T K
Sbjct: 11  FAEWVRSRSIWMIHYCTACGAIELPPNIVAPLDAERWGIMAAPSPRQADVLVVMGYVTKK 70

Query: 106 MASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEA 165
               L R+Y QMPEPRYV+   +C   GG Y  SYS ++  D  +PVD++VPGC P AE 
Sbjct: 71  TLKILMRLYHQMPEPRYVMVGCNCPATGGLYWDSYSTIKAVDEFLPVDVWVPGCMPRAED 130

Query: 166 LIYGILLLQKKI 177
            + G L L+KKI
Sbjct: 131 WLQGFLRLRKKI 142


>gi|315180292|gb|ADT87206.1| hydrogenase-4 component I [Vibrio furnissii NCTC 11218]
          Length = 272

 Score =  113 bits (283), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 52/122 (42%), Positives = 74/122 (60%), Gaps = 4/122 (3%)

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           G   C +E+  A+ P YD ERFG    ASPR +D+++  G +T  M +   R Y+  P+P
Sbjct: 48  GCNACEIEIFAATTPVYDTERFGIKVVASPRHADILLFTGAVTRAMRAPALRAYEAAPDP 107

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176
           + V+S G+C   GG +H  Y V  G D+IVPVD+Y+PGCPPT  A +YG      LL++K
Sbjct: 108 KIVVSYGACGCDGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAVALGLLEQK 167

Query: 177 IR 178
           + 
Sbjct: 168 MH 169


>gi|91202885|emb|CAJ72524.1| strongly similar to membrane-bound [NiFe]-hydrogenase-3, small
           subunit (chain G) [Candidatus Kuenenia stuttgartiensis]
          Length = 262

 Score =  113 bits (283), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 49/115 (42%), Positives = 76/115 (66%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C  E++    P +DL+RFG    ASPR +D ++V G  T  + +AL + Y   PEP+ VI
Sbjct: 148 CEWEVVALLNPVHDLQRFGIDIVASPRHADCLLVTGPPTRNLETALIKGYHATPEPKMVI 207

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           ++G+CA  GG +  SY+   G D++VPVD+Y+PGCPP  +A+IYG LL  +++++
Sbjct: 208 ALGTCACSGGIFSNSYATKNGIDKVVPVDVYIPGCPPRPQAIIYGFLLALERVQK 262


>gi|312877215|ref|ZP_07737184.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|311796024|gb|EFR12384.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Caldicellulosiruptor
           lactoaceticus 6A]
          Length = 154

 Score =  113 bits (283), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 47/120 (39%), Positives = 81/120 (67%), Gaps = 4/120 (3%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E++    P YD+ERFG     +P+ +D+++V+G++ ++ A  L+ +Y+QMP P+ V+
Sbjct: 24  CDIEILATLTPVYDVERFGIINVGNPKHADILVVSGSVNHRNARVLKTIYEQMPHPKAVV 83

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKKIRRV 180
           ++G+CA  GG +   Y+ + G D +VPVD+YVPGC P  EA++ GIL    LL++K + +
Sbjct: 84  AIGACACSGGIFKECYNTLGGADTVVPVDVYVPGCAPRPEAIMEGILKAAQLLEEKKKNM 143


>gi|20093160|ref|NP_619235.1| hydrogenase-3, subunit G (HycG homolog) [Methanosarcina acetivorans
           C2A]
 gi|19918502|gb|AAM07715.1| hydrogenase-3, subunit G (HycG-like protein) [Methanosarcina
           acetivorans C2A]
          Length = 170

 Score =  113 bits (283), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 48/116 (41%), Positives = 77/116 (66%)

Query: 64  CCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYV 123
              +E+     P YD+ERFG +  ASPR +D+++V G +T  MA A+++ Y+ MP P++V
Sbjct: 55  STEIEISNLGNPHYDVERFGISFVASPRHADILLVTGAVTLNMAEAVKKTYEAMPSPKFV 114

Query: 124 ISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           +++G  A  GG Y  SY+V+ G D+I+PVD+ +PG PP+ + ++ GIL L KK  +
Sbjct: 115 VAVGDDACDGGIYKDSYAVLSGVDKILPVDMKIPGNPPSPKEILKGILALVKKASK 170


>gi|260768583|ref|ZP_05877517.1| formate hydrogenlyase subunit 7 [Vibrio furnissii CIP 102972]
 gi|260616613|gb|EEX41798.1| formate hydrogenlyase subunit 7 [Vibrio furnissii CIP 102972]
          Length = 272

 Score =  113 bits (283), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 52/122 (42%), Positives = 74/122 (60%), Gaps = 4/122 (3%)

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           G   C +E+  A+ P YD ERFG    ASPR +D+++  G +T  M +   R Y+  P+P
Sbjct: 48  GCNACEIEIFAATTPVYDTERFGIKVVASPRHADILLFTGAVTRAMRAPALRAYEAAPDP 107

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176
           + V+S G+C   GG +H  Y V  G D+IVPVD+Y+PGCPPT  A +YG      LL++K
Sbjct: 108 KIVVSYGACGCDGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAVALGLLEQK 167

Query: 177 IR 178
           + 
Sbjct: 168 MH 169


>gi|90410736|ref|ZP_01218751.1| hydrogenase-4 component I [Photobacterium profundum 3TCK]
 gi|90328367|gb|EAS44665.1| hydrogenase-4 component I [Photobacterium profundum 3TCK]
          Length = 277

 Score =  113 bits (282), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 55/141 (39%), Positives = 80/141 (56%), Gaps = 6/141 (4%)

Query: 44  DQLVTWARTGSLMWMTFGLAC--CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGT 101
           D L+   R  + ++      C  C +E+  A+ P +D ERFG    ASPR +D+++  G 
Sbjct: 29  DALIKQIRRSAYVYRVDCGGCNGCEIEIFAATTPVFDTERFGIKVVASPRHADILLFTGA 88

Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP 161
           +T  M +   R Y+  P+P+ V+S G+C   GG +H  Y V  G D+IVPVD+Y+PGCPP
Sbjct: 89  VTRAMRAPALRAYEAAPDPKIVVSYGACGCDGGIFHDLYCVWGGTDKIVPVDVYIPGCPP 148

Query: 162 TAEALIYGIL----LLQKKIR 178
           T  A IYG      LL +K+ 
Sbjct: 149 TPAATIYGFAVALGLLDQKLH 169


>gi|21228424|ref|NP_634346.1| ech hydrogenase subunit [Methanosarcina mazei Go1]
 gi|20906901|gb|AAM32018.1| Ech Hydrogenase, Subunit [Methanosarcina mazei Go1]
          Length = 156

 Score =  113 bits (282), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 45/107 (42%), Positives = 76/107 (71%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E++    P YD ERFG     +P+Q+D+M+V G++  K  + L+ +Y+Q+P+P+ V+
Sbjct: 20  CDIEVVACLTPLYDAERFGVLNIGTPKQADIMVVTGSVNYKNVNVLKNLYNQIPDPKVVL 79

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171
           ++G+CA+ GG +H  Y+V+ G D+I+PVD YVPGC P  EA++ G++
Sbjct: 80  AVGACASTGGIFHNCYNVIGGVDQIIPVDAYVPGCCPRPEAILDGVV 126


>gi|304315647|ref|YP_003850792.1| NADH ubiquinone oxidoreductase 20 kDa subunit
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
 gi|302777149|gb|ADL67708.1| NADH ubiquinone oxidoreductase 20 kDa subunit
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
          Length = 157

 Score =  113 bits (282), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 50/120 (41%), Positives = 75/120 (62%), Gaps = 5/120 (4%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E++    P YD+ERFG     +P+ +D++IV GT+  K    L+ VYD MPEP+ V+
Sbjct: 28  CDIEVLACMTPIYDMERFGMVNVGNPKHADILIVTGTVNEKNKDVLKNVYDMMPEPKVVV 87

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGI-----LLLQKKIRR 179
           + G CA  GG +   Y+V+ G D+++PVD+Y+PGCP   EA+I G+     +L  K  RR
Sbjct: 88  AAGICACSGGIFRDCYNVLGGIDKVIPVDVYIPGCPAKPEAMIDGLYKAAQILKDKYSRR 147


>gi|73667700|ref|YP_303715.1| ech hydrogenase subunit C [Methanosarcina barkeri str. Fusaro]
 gi|3005969|emb|CAA76119.1| echC [Methanosarcina barkeri]
 gi|72394862|gb|AAZ69135.1| ech hydrogenase subunit C [Methanosarcina barkeri str. Fusaro]
          Length = 156

 Score =  113 bits (282), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 44/107 (41%), Positives = 76/107 (71%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E++    P YD ERFG     +P+Q+D+M+V G++  K  + L+ +Y+Q+P+P+ V+
Sbjct: 20  CDIEVVACLTPLYDAERFGVLNIGTPKQADIMVVTGSVNYKNVNVLKNIYNQIPDPKVVL 79

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171
           ++G+CA+ GG +H  Y+V+ G D+++PVD YVPGC P  EA++ G++
Sbjct: 80  AVGACASTGGIFHDCYNVIGGVDQVIPVDAYVPGCCPRPEAILDGVV 126


>gi|222529076|ref|YP_002572958.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Caldicellulosiruptor
           bescii DSM 6725]
 gi|312134931|ref|YP_004002269.1| NADH ubiquinone oxidoreductase 20 kda subunit [Caldicellulosiruptor
           owensensis OL]
 gi|312622668|ref|YP_004024281.1| NADH ubiquinone oxidoreductase 20 kda subunit [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|222455923|gb|ACM60185.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Caldicellulosiruptor
           bescii DSM 6725]
 gi|311774982|gb|ADQ04469.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Caldicellulosiruptor
           owensensis OL]
 gi|312203135|gb|ADQ46462.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Caldicellulosiruptor
           kronotskyensis 2002]
          Length = 154

 Score =  113 bits (282), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 47/120 (39%), Positives = 81/120 (67%), Gaps = 4/120 (3%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E++    P YD+ERFG     +P+ +D+++V+G++ ++ A  L+ +Y+QMP P+ V+
Sbjct: 24  CDIEILATLTPVYDVERFGIINVGNPKHADILVVSGSVNHRNARVLKTIYEQMPHPKAVV 83

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKKIRRV 180
           ++G+CA  GG +   Y+ + G D +VPVD+YVPGC P  EA++ GIL    LL++K + +
Sbjct: 84  AIGACACSGGIFKECYNTLGGADTVVPVDVYVPGCAPRPEAIMEGILKAAQLLEEKKKNM 143


>gi|323706313|ref|ZP_08117879.1| NADH ubiquinone oxidoreductase 20 kDa subunit
           [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323534365|gb|EGB24150.1| NADH ubiquinone oxidoreductase 20 kDa subunit
           [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 157

 Score =  113 bits (282), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 49/119 (41%), Positives = 76/119 (63%), Gaps = 4/119 (3%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E++    P YD+ERFG     +P+ +D++IV GT+  K    L+ VYD MP+P+ V+
Sbjct: 28  CDIEVLACMTPIYDMERFGMVNVGNPKHADILIVTGTVNEKNKDVLKNVYDMMPDPKVVV 87

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKKIRR 179
           + G CA  GG +   Y+V+ G D+++PVD+YVPGCP   EA+I G+     +L++K  R
Sbjct: 88  AAGICACSGGIFRDCYNVLGGIDKVIPVDVYVPGCPAKPEAMIDGLYKAAQILKEKYSR 146


>gi|90407577|ref|ZP_01215758.1| hydrogenase-4 component I [Psychromonas sp. CNPT3]
 gi|90311280|gb|EAS39384.1| hydrogenase-4 component I [Psychromonas sp. CNPT3]
          Length = 261

 Score =  112 bits (281), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 52/118 (44%), Positives = 72/118 (61%), Gaps = 4/118 (3%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E+  A+ P +D ERFG    ASPR +D+++  G +T  M     R Y+  P+P+ VI
Sbjct: 52  CEIEIFAATTPVFDTERFGIKIVASPRHADILLFTGAVTRAMRMPALRAYEAAPDPKIVI 111

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKKIR 178
           S G+C   GG +H  Y V  G D+IVPVD+Y+PGCPPT  A IYG      LL +K++
Sbjct: 112 SYGACGCDGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATIYGFAMALGLLDQKLK 169


>gi|307130311|ref|YP_003882327.1| hydrogenase 4, Fe-S subunit [Dickeya dadantii 3937]
 gi|306527840|gb|ADM97770.1| hydrogenase 4, Fe-S subunit [Dickeya dadantii 3937]
          Length = 263

 Score =  112 bits (281), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 53/122 (43%), Positives = 73/122 (59%), Gaps = 4/122 (3%)

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           G   C +E+  A  P +D ERFG    ASPR +D+++  G +T  M S   R Y+  P+P
Sbjct: 46  GCNGCEIEIFSAITPLFDAERFGIKVVASPRHADILLFTGAVTRAMRSPALRAYESAPDP 105

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176
           +  IS G+C  GGG +H  Y V  G D+IVP+D+Y+PGCPPT  A IYG      LL++K
Sbjct: 106 KICISYGACGCGGGIFHDLYCVWGGSDKIVPIDVYIPGCPPTPAATIYGFAVALGLLEQK 165

Query: 177 IR 178
           + 
Sbjct: 166 LH 167


>gi|255322773|ref|ZP_05363915.1| NADH ubiquinone oxidoreductase, 20 Kd subunit [Campylobacter showae
           RM3277]
 gi|255300115|gb|EET79390.1| NADH ubiquinone oxidoreductase, 20 Kd subunit [Campylobacter showae
           RM3277]
          Length = 276

 Score =  112 bits (281), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 52/145 (35%), Positives = 88/145 (60%), Gaps = 3/145 (2%)

Query: 28  RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLAC--CAVEMMQASMPRYDLERFGFA 85
           ++   I     L   ++ L    R+ S+  +  G +C  C +E+  A  P +D ERFGF 
Sbjct: 5   QVPENIKTANDLTAKLEHLKNIKRSFSVYRIDCG-SCNGCEIEIFAAITPMWDPERFGFK 63

Query: 86  PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRG 145
             A+PR +D+++ +G +T +M   L R Y+  P+P+ V++ G+C + GG ++ +YSV  G
Sbjct: 64  LVANPRHADILVCSGPVTRQMYYPLLRAYEAAPDPKIVVAFGACGSTGGIFYDAYSVWGG 123

Query: 146 CDRIVPVDIYVPGCPPTAEALIYGI 170
            D+I+PVD+Y+PGCPP   ++IYG+
Sbjct: 124 IDKIIPVDVYIPGCPPHPASVIYGL 148


>gi|260892452|ref|YP_003238549.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Ammonifex degensii
           KC4]
 gi|260864593|gb|ACX51699.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Ammonifex degensii
           KC4]
          Length = 143

 Score =  112 bits (281), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 52/136 (38%), Positives = 86/136 (63%), Gaps = 3/136 (2%)

Query: 46  LVTWARTGSLMWMTF-GLAC--CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL 102
           L+T AR  S   + F   +C  C +E++    P YD+ERFG     +P+ +D+++V G  
Sbjct: 3   LLTKARVKSPWLLHFCSGSCNGCDIEILACLTPYYDVERFGILHMGNPKHADILLVTGPA 62

Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162
             +    L+ +Y QMP+P+ V+++G+CA  GG +H  Y+++ G D+++PVD+YVPGC   
Sbjct: 63  NRRNYKVLQNLYAQMPDPKVVVAVGTCACTGGIFHNCYNIMGGIDKVIPVDVYVPGCAAR 122

Query: 163 AEALIYGILLLQKKIR 178
            EA+I G++L  KK+R
Sbjct: 123 PEAIIDGVVLALKKLR 138


>gi|257460517|ref|ZP_05625618.1| formate hydrogenlyase subunit 7 [Campylobacter gracilis RM3268]
 gi|257441848|gb|EEV16990.1| formate hydrogenlyase subunit 7 [Campylobacter gracilis RM3268]
          Length = 274

 Score =  112 bits (280), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 52/145 (35%), Positives = 88/145 (60%), Gaps = 3/145 (2%)

Query: 28  RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLAC--CAVEMMQASMPRYDLERFGFA 85
           ++   I +   L   ++ L    R+ S+  +  G +C  C +E+  +  P +D ERFGF 
Sbjct: 5   QVPENIKNANDLTAKLELLKNIKRSFSVYRIDCG-SCNGCEIEIFASITPMWDPERFGFK 63

Query: 86  PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRG 145
             A+PR +D+++  G +T +M   L R Y+  P+P+ V+++ +C + GG +H +YSV  G
Sbjct: 64  LVANPRHADILVCTGPVTRQMYYPLLRAYEAAPDPKIVVALRACGSTGGIFHDAYSVWSG 123

Query: 146 CDRIVPVDIYVPGCPPTAEALIYGI 170
            D+IVPVD+Y+PGCPP   ++IYG+
Sbjct: 124 IDKIVPVDVYIPGCPPHPASIIYGL 148


>gi|34536232|dbj|BAC87587.1| unnamed protein product [Homo sapiens]
          Length = 155

 Score =  112 bits (280), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 55/86 (63%), Positives = 67/86 (77%), Gaps = 1/86 (1%)

Query: 29  ISSEITHKG-FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
           ++ + + +G ++V  +D LV WAR  SL  MTFGLACCAVEMM  + PRYD++RFG   R
Sbjct: 59  VAPKPSSRGEYVVAKLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFR 118

Query: 88  ASPRQSDVMIVAGTLTNKMASALRRV 113
           ASPRQSDVMIVAGTLTNKMA ALR+V
Sbjct: 119 ASPRQSDVMIVAGTLTNKMAPALRKV 144


>gi|169247665|gb|ACA51664.1| EchC [Thermoanaerobacterium saccharolyticum]
          Length = 157

 Score =  112 bits (280), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 50/120 (41%), Positives = 75/120 (62%), Gaps = 5/120 (4%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E++    P YD+ERFG     +P+ +D++IV GT+  K    L+ VYD MP+P+ V+
Sbjct: 28  CDIEVLACMTPIYDMERFGMVNVGNPKHADILIVTGTVNEKNKDVLKNVYDMMPDPKVVV 87

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGI-----LLLQKKIRR 179
           + G CA  GG +   Y+V+ G D+++PVD+YVPGCP   EA+I G+     +L  K  RR
Sbjct: 88  AAGICACSGGIFRDCYNVLGGIDKVIPVDVYVPGCPAKPEAMIDGLYKAAQILKDKYSRR 147


>gi|312136850|ref|YP_004004187.1| NADH ubiquinone oxidoreductase 20 kda subunit [Methanothermus
           fervidus DSM 2088]
 gi|311224569|gb|ADP77425.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanothermus
           fervidus DSM 2088]
          Length = 157

 Score =  112 bits (280), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 48/116 (41%), Positives = 78/116 (67%), Gaps = 4/116 (3%)

Query: 56  MWM----TFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALR 111
           MW+    + G   C +E + A  P YD+ER G    +SPR +D+++V G +T +  S+L+
Sbjct: 18  MWLFHFNSGGCNGCDIEFVAALTPLYDVERMGIQLVSSPRHADILVVTGPVTLQSLSSLK 77

Query: 112 RVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALI 167
            +Y+QMP P+YVI++G+CA  G  +  SY+V+ G D+++PVD+Y+PGCPP+  A+ 
Sbjct: 78  LIYEQMPSPKYVIAVGNCACDGCVFKDSYNVLEGVDKVLPVDVYIPGCPPSPRAIF 133


>gi|305664299|ref|YP_003860587.1| ech hydrogenase subunit C [Ignisphaera aggregans DSM 17230]
 gi|304378868|gb|ADM28707.1| ech hydrogenase subunit C [Ignisphaera aggregans DSM 17230]
          Length = 145

 Score =  112 bits (280), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 54/119 (45%), Positives = 80/119 (67%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E++ A  P YD ER+G     S R  D++IV G +T K A  L+R+Y QMP  +YV+
Sbjct: 22  CDIEVLAAITPLYDPERYGIKLAPSIRHGDILIVTGVVTKKAAERLKRLYSQMPNLKYVV 81

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           ++G+CA  GG +  SYSVV G ++++PVD+YVPGCPP  E ++  +LLL ++ + V NV
Sbjct: 82  AVGACAYDGGVFKGSYSVVGGVNKVIPVDVYVPGCPPRPEEILRALLLLLQREKGVENV 140


>gi|11499417|ref|NP_070656.1| F420H2:quinone oxidoreductase, 39.7 kDa subunit, putative
           [Archaeoglobus fulgidus DSM 4304]
 gi|2648716|gb|AAB89421.1| F420H2:quinone oxidoreductase, 39.7 kDa subunit, putative
           [Archaeoglobus fulgidus DSM 4304]
          Length = 353

 Score =  112 bits (280), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 57/130 (43%), Positives = 77/130 (59%), Gaps = 1/130 (0%)

Query: 49  WARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108
           W    SL  +    ACC  E+  A    YD ER G       RQ++++IV G +T KMA 
Sbjct: 22  WGTKWSLWPVHLVTACCGAELAHAFACGYDGERIGALNYGIARQTNLIIVEGAITRKMAK 81

Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168
            LR  ++QMP+P++VI MG+C   GG +   Y +V+  D +VPVD ++PGCPPT EAL+ 
Sbjct: 82  VLRITWEQMPDPKFVIVMGACGLQGGIFWNGYHMVKPSD-VVPVDFFIPGCPPTPEALLR 140

Query: 169 GILLLQKKIR 178
           GI  LQ KI 
Sbjct: 141 GIRQLQFKIE 150


>gi|21227166|ref|NP_633088.1| formate hydrogenlyase subunit 7 [Methanosarcina mazei Go1]
 gi|20905501|gb|AAM30760.1| Formate hydrogenlyase subunit 7 [Methanosarcina mazei Go1]
          Length = 170

 Score =  112 bits (280), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 51/116 (43%), Positives = 75/116 (64%)

Query: 64  CCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYV 123
              +E+     P YD+ERFG +  ASPR +DV++V G +T  MA A ++ Y+ MP P+YV
Sbjct: 55  STEMEISNLGNPHYDVERFGISFVASPRHADVLLVTGAVTLNMAEAAKKTYEAMPYPKYV 114

Query: 124 ISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           I++G  A  GG Y  SY+V+ G D+I+PVD+ +PG PP+ + ++ GI  L KK R 
Sbjct: 115 IAVGDDACDGGIYKGSYAVLGGVDKILPVDVKIPGNPPSPKEILQGIFALVKKARE 170


>gi|325290171|ref|YP_004266352.1| ech hydrogenase subunit C [Syntrophobotulus glycolicus DSM 8271]
 gi|324965572|gb|ADY56351.1| ech hydrogenase subunit C [Syntrophobotulus glycolicus DSM 8271]
          Length = 145

 Score =  112 bits (279), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 45/123 (36%), Positives = 80/123 (65%), Gaps = 4/123 (3%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E++    P YD+ERFG     +P+ +D+ ++ G++  +  + ++ +YDQMPEP+ V+
Sbjct: 21  CDIEVLACLTPLYDVERFGVLNIGNPKHADIFVITGSVNEQNKTVIKNIYDQMPEPKVVV 80

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKKIRRV 180
           ++G+CA  GG +   Y+V  G D+++PVD+YVPGC    EA+I G++    +L+ K + +
Sbjct: 81  AIGACATSGGVFRQCYNVQGGVDKVIPVDVYVPGCAARPEAIIDGVVQGLAVLESKYKNM 140

Query: 181 GNV 183
           G V
Sbjct: 141 GKV 143


>gi|251790300|ref|YP_003005021.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Dickeya zeae
           Ech1591]
 gi|247538921|gb|ACT07542.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Dickeya zeae
           Ech1591]
          Length = 263

 Score =  112 bits (279), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 52/122 (42%), Positives = 73/122 (59%), Gaps = 4/122 (3%)

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           G   C +E+  A  P +D ERFG    ASPR +D+++  G +T  M +   R Y+  P+P
Sbjct: 46  GCNGCEIEIFSAITPLFDAERFGIKVVASPRHADILLFTGAVTRAMRTPALRAYESAPDP 105

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176
           +  IS G+C  GGG +H  Y V  G D+IVP+D+Y+PGCPPT  A IYG      LL++K
Sbjct: 106 KICISYGACGCGGGIFHDLYCVWGGSDKIVPIDVYIPGCPPTPAATIYGFAVALGLLEQK 165

Query: 177 IR 178
           + 
Sbjct: 166 LH 167


>gi|271501147|ref|YP_003334172.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Dickeya dadantii
           Ech586]
 gi|270344702|gb|ACZ77467.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Dickeya dadantii
           Ech586]
          Length = 262

 Score =  112 bits (279), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 52/122 (42%), Positives = 73/122 (59%), Gaps = 4/122 (3%)

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           G   C +E+  A  P +D ERFG    ASPR +D+++  G +T  M +   R Y+  P+P
Sbjct: 46  GCNGCEIEIFSAITPLFDAERFGIKVVASPRHADILLFTGAVTRAMRTPALRAYESAPDP 105

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176
           +  IS G+C  GGG +H  Y V  G D+IVP+D+Y+PGCPPT  A IYG      LL++K
Sbjct: 106 KICISYGACGCGGGIFHDLYCVWGGSDKIVPIDVYIPGCPPTPAATIYGFAVALGLLEQK 165

Query: 177 IR 178
           + 
Sbjct: 166 LH 167


>gi|242238721|ref|YP_002986902.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Dickeya dadantii
           Ech703]
 gi|242130778|gb|ACS85080.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Dickeya dadantii
           Ech703]
          Length = 263

 Score =  112 bits (279), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 52/122 (42%), Positives = 73/122 (59%), Gaps = 4/122 (3%)

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           G   C +E+  A  P +D ERFG    ASPR +D+++  G +T  M +   R Y+  P+P
Sbjct: 46  GCNGCEIEIFSAITPLFDAERFGIKVVASPRHADILLFTGAVTRAMRTPALRAYESAPDP 105

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176
           +  IS G+C  GGG +H  Y V  G D+IVP+D+Y+PGCPPT  A IYG      LL++K
Sbjct: 106 KICISYGACGCGGGIFHDLYCVWGGSDKIVPIDVYIPGCPPTPAATIYGFAVALGLLEQK 165

Query: 177 IR 178
           + 
Sbjct: 166 LH 167


>gi|149194128|ref|ZP_01871226.1| HYDROGENASE-Ni,Fe-hydrogenase III small subunit [Caminibacter
           mediatlanticus TB-2]
 gi|149136081|gb|EDM24559.1| HYDROGENASE-Ni,Fe-hydrogenase III small subunit [Caminibacter
           mediatlanticus TB-2]
          Length = 280

 Score =  112 bits (279), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 50/120 (41%), Positives = 77/120 (64%), Gaps = 4/120 (3%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E+  A  P +D ERFGF   ASPR +D+++  G LT +M   L R Y+  P+P+ VI
Sbjct: 46  CEIEIFAAITPMWDPERFGFKLVASPRHADILLCTGPLTRQMYYPLLRAYEATPDPKVVI 105

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKKIRRV 180
           ++G+C   GG +H SY+V  G D  +PVD+Y+PGCPP    +I+G+     +L +K+++V
Sbjct: 106 AVGACGCTGGIFHDSYAVWSGIDSTLPVDVYIPGCPPHPATIIHGLAVALGILDQKMKKV 165


>gi|326390323|ref|ZP_08211882.1| NADH-quinone oxidoreductase, B subunit [Thermoanaerobacter
           ethanolicus JW 200]
 gi|325993600|gb|EGD52033.1| NADH-quinone oxidoreductase, B subunit [Thermoanaerobacter
           ethanolicus JW 200]
          Length = 198

 Score =  112 bits (279), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 52/136 (38%), Positives = 83/136 (61%)

Query: 43  VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL 102
           +D L+ + R  S+  + +   C AVE+  +   R+D+ERFG  P A+PRQ+DV++V G +
Sbjct: 13  IDNLIDFFRKRSIWMLHYCTGCGAVELPPSMTSRWDIERFGIVPMATPRQADVLLVTGYV 72

Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162
           + K    + ++Y+QMPEP++V++ GSC   GG Y  SY+ +      +PVDI V GC P 
Sbjct: 73  SLKTLKRIIKIYEQMPEPKWVLAFGSCTVNGGIYWDSYNTITNLAEYIPVDITVSGCMPR 132

Query: 163 AEALIYGILLLQKKIR 178
            EA+I  +  L + I+
Sbjct: 133 PEAVIDALQTLMEMIQ 148


>gi|217077746|ref|YP_002335464.1| NADH dehydrogenase subunit B [Thermosipho africanus TCF52B]
 gi|217037601|gb|ACJ76123.1| NADH dehydrogenase beta subunit [Thermosipho africanus TCF52B]
          Length = 180

 Score =  111 bits (278), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 58/149 (38%), Positives = 83/149 (55%), Gaps = 10/149 (6%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
             +G      DQL    R+ SL  + +   C A+E+  +   R+D+ERFG  P A+PRQ+
Sbjct: 4   NERGIWEKIADQL----RSKSLWMLYYCTGCGAIELPPSMTSRFDMERFGMGPMATPRQT 59

Query: 94  DVMIVAGTLTNKMASALRRV---YDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150
           D++ + G L+ K    LRRV   Y+ M EP+YV+  GSC   GG Y+ SY+ +   D  +
Sbjct: 60  DILFITGYLSTK---TLRRVIYTYEMMSEPKYVVGFGSCTLNGGIYYDSYATINKLDNYI 116

Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           PVD+Y+ GC P  EAL+     L K IR 
Sbjct: 117 PVDLYIAGCMPRPEALLNAFNELMKMIRN 145


>gi|315231251|ref|YP_004071687.1| membrane bound hydrogenase NiFe-hydrogenase small subunit
           [Thermococcus barophilus MP]
 gi|315184279|gb|ADT84464.1| membrane bound hydrogenase NiFe-hydrogenase small subunit
           [Thermococcus barophilus MP]
          Length = 151

 Score =  111 bits (278), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 47/121 (38%), Positives = 81/121 (66%), Gaps = 1/121 (0%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E++ A  PRYD ERFG     +PR +D+++V G +T++    ++ +Y+Q P+P+ VI
Sbjct: 30  CDIEIIAALTPRYDAERFGVKLVGTPRHADILLVTGPITDQSLERVKLIYEQTPDPKVVI 89

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILL-LQKKIRRVGNV 183
           ++G+C  GG  ++ S       D+ +PVD++VPGCPP  EA++YG++L L+K I+++   
Sbjct: 90  AVGACPTGGSVFYESPFTNAPLDKHIPVDVFVPGCPPRPEAILYGVVLGLEKLIKKIEGE 149

Query: 184 K 184
           K
Sbjct: 150 K 150


>gi|307265396|ref|ZP_07546952.1| NADH-quinone oxidoreductase, B subunit [Thermoanaerobacter wiegelii
           Rt8.B1]
 gi|306919510|gb|EFN49728.1| NADH-quinone oxidoreductase, B subunit [Thermoanaerobacter wiegelii
           Rt8.B1]
          Length = 198

 Score =  111 bits (278), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 52/136 (38%), Positives = 83/136 (61%)

Query: 43  VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL 102
           +D L+ + R  S+  + +   C AVE+  +   R+D+ERFG  P A+PRQ+DV++V G +
Sbjct: 13  IDNLIDFFRKRSIWILHYCTGCGAVELPPSMTSRWDIERFGIVPMATPRQADVLLVTGYV 72

Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162
           + K    + ++Y+QMPEP++V++ GSC   GG Y  SY+ +      +PVDI V GC P 
Sbjct: 73  SLKTLKRIIKIYEQMPEPKWVLAFGSCTVNGGIYWDSYNTITNLAEYIPVDITVSGCMPR 132

Query: 163 AEALIYGILLLQKKIR 178
            EA+I  +  L + I+
Sbjct: 133 PEAVIDALQTLMEMIQ 148


>gi|145591231|ref|YP_001153233.1| NADH-quinone oxidoreductase, B subunit [Pyrobaculum arsenaticum DSM
           13514]
 gi|145282999|gb|ABP50581.1| NADH-quinone oxidoreductase, B subunit [Pyrobaculum arsenaticum DSM
           13514]
          Length = 196

 Score =  111 bits (278), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 57/137 (41%), Positives = 88/137 (64%), Gaps = 1/137 (0%)

Query: 42  SVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGT 101
            ++++  W    SL  +    +CC VE+   S P +D ER+G  P  + RQS+V++V GT
Sbjct: 21  KLEKIFNWGVRWSLWPVHLVTSCCGVEVAHTSGPGFDAERWGVLPFHTMRQSNVILVEGT 80

Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP 161
           +T KMA  L+ VY+QMPEP++V++MG+CA  GG +  SY VV+    +  VD+Y+ GCPP
Sbjct: 81  ITRKMAKVLKMVYEQMPEPKFVLAMGACAVRGGLFWNSYHVVQVDTVVP-VDVYIAGCPP 139

Query: 162 TAEALIYGILLLQKKIR 178
           T EA++   ++L  KI+
Sbjct: 140 TPEAVVRAFIMLHNKIK 156


>gi|116255492|ref|YP_771325.1| putative formate hydrogenlyase subunit 7 [Rhizobium leguminosarum
           bv. viciae 3841]
 gi|115260140|emb|CAK03241.1| putative formate hydrogenlyase subunit 7 [Rhizobium leguminosarum
           bv. viciae 3841]
          Length = 177

 Score =  111 bits (277), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 49/119 (41%), Positives = 75/119 (63%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +EM       YD+ERFG    ASPR +DV++V G +T  M  AL R Y   P+P++V+
Sbjct: 58  CELEMHALGNTFYDIERFGLRFVASPRHADVLLVTGPVTRNMVQALERTYIATPDPKWVV 117

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           ++G C   GG +  SY+V+ G  ++VPVD+++PGCPP+   ++ G+L L + + R G V
Sbjct: 118 ALGDCGRDGGCFAGSYAVLGGVSKVVPVDLHIPGCPPSPMDILKGLLALLEDVNREGRV 176


>gi|147919461|ref|YP_686799.1| hydrogenase, small subunit-like protein (HycG-like) [uncultured
           methanogenic archaeon RC-I]
 gi|110622195|emb|CAJ37473.1| hydrogenase, small subunit-like protein (HycG-like) [uncultured
           methanogenic archaeon RC-I]
          Length = 247

 Score =  111 bits (277), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 51/108 (47%), Positives = 71/108 (65%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C VE+   S   YD+ERFG    ASPR +D ++V G +T  M   L + Y+  P+P+ VI
Sbjct: 130 CEVEVNSLSNAIYDIERFGLHIVASPRHADALLVTGPVTRNMERGLMQSYNATPDPKMVI 189

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILL 172
           +MG+CA  GG +  SY+V  G D +VPVD+Y+PGCPP  +A+I GI+L
Sbjct: 190 AMGACAITGGIFRDSYAVYNGVDALVPVDVYIPGCPPRPQAIIQGIML 237


>gi|150021104|ref|YP_001306458.1| NADH dehydrogenase subunit B [Thermosipho melanesiensis BI429]
 gi|149793625|gb|ABR31073.1| NADH-quinone oxidoreductase, B subunit [Thermosipho melanesiensis
           BI429]
          Length = 180

 Score =  111 bits (277), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 56/131 (42%), Positives = 78/131 (59%), Gaps = 6/131 (4%)

Query: 51  RTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASAL 110
           R+ SL  + +   C AVE+      R+D+ERFG  P A+PRQ+D++ + G L+   A  L
Sbjct: 17  RSKSLWMLHYCTGCGAVELPPTMTSRFDMERFGMGPMATPRQADILFITGYLS---AKTL 73

Query: 111 RRV---YDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALI 167
           RRV   Y+QM EP+YVI  GSC   GG Y+ SY+ +   D  +PVD+Y+ GC P  EAL+
Sbjct: 74  RRVIYTYEQMAEPKYVIGFGSCTLNGGIYYDSYATINKLDYYIPVDLYIAGCMPRPEALL 133

Query: 168 YGILLLQKKIR 178
                L + IR
Sbjct: 134 EAFNKLMRMIR 144


>gi|238788858|ref|ZP_04632649.1| Formate hydrogenlyase subunit 7 [Yersinia frederiksenii ATCC 33641]
 gi|238723163|gb|EEQ14812.1| Formate hydrogenlyase subunit 7 [Yersinia frederiksenii ATCC 33641]
          Length = 224

 Score =  110 bits (276), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 50/118 (42%), Positives = 72/118 (61%), Gaps = 4/118 (3%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E+  A  P +D ERFG    ASPR +D+++  G +T  M +   R Y+  P+P+  +
Sbjct: 9   CEIEIFAAITPLFDTERFGIKVVASPRHADILLFTGAVTRAMRTPALRAYESAPDPKICV 68

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKKIR 178
           S G+C  GGG +H  Y V  G D IVP+D+Y+PGCPPT  A IYG      LL++K++
Sbjct: 69  SYGACGCGGGIFHDLYCVWGGSDTIVPIDVYIPGCPPTPAATIYGFAVALGLLEQKLK 126


>gi|242399279|ref|YP_002994703.1| Membrane-bound hydrogenase MBH 1, subunit Mbh1J (hydrogenase
           subunit) [Thermococcus sibiricus MM 739]
 gi|242265672|gb|ACS90354.1| Membrane-bound hydrogenase MBH 1, subunit Mbh1J (hydrogenase
           subunit) [Thermococcus sibiricus MM 739]
          Length = 156

 Score =  110 bits (276), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 46/121 (38%), Positives = 80/121 (66%), Gaps = 1/121 (0%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E++ A  PRYD ERFG     +PR +D+++V G +T++    ++ +Y+Q P+P+ V+
Sbjct: 35  CDIEIIAALTPRYDAERFGIKLVGTPRHADILLVTGPITDQSLERVKLIYEQTPDPKVVV 94

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILL-LQKKIRRVGNV 183
           ++G+C  GG  +  S       DR +PVD+++PGCPP  EA++YG++L L+K I+++   
Sbjct: 95  AIGACPTGGSVFFESPFTNAPLDRHIPVDVFIPGCPPRPEAVLYGVVLGLEKFIKKIEGE 154

Query: 184 K 184
           K
Sbjct: 155 K 155


>gi|119871850|ref|YP_929857.1| NADH-quinone oxidoreductase, B subunit [Pyrobaculum islandicum DSM
           4184]
 gi|119673258|gb|ABL87514.1| NADH-quinone oxidoreductase, B subunit [Pyrobaculum islandicum DSM
           4184]
 gi|164472821|dbj|BAF32936.2| NADH-ubiquinone oxidoreductase subunit [Pyrobaculum islandicum DSM
           4184]
          Length = 183

 Score =  110 bits (276), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 60/130 (46%), Positives = 84/130 (64%), Gaps = 1/130 (0%)

Query: 49  WARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108
           W    SL  +    +CC VE+   S P +D ER+G  P  + RQS+V++V GT+T KMA 
Sbjct: 21  WGVRWSLWPVHLVTSCCGVEVAHTSGPGFDAERWGVLPFHTMRQSNVILVEGTITKKMAK 80

Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168
            L+ VY+QMPEP+YVI+MG+CA  GG +  SY VV+    +  VD+Y+ GCPPT EA+I 
Sbjct: 81  VLKMVYEQMPEPKYVIAMGACAVRGGLFWNSYHVVQVDTVVP-VDVYIAGCPPTPEAVIR 139

Query: 169 GILLLQKKIR 178
             ++L  KI+
Sbjct: 140 AFIMLHNKIK 149


>gi|18977816|ref|NP_579173.1| NADH dehydrogenase subunit B [Pyrococcus furiosus DSM 3638]
 gi|18893567|gb|AAL81568.1| NADH dehydrogenase subunit [Pyrococcus furiosus DSM 3638]
          Length = 192

 Score =  110 bits (275), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 53/135 (39%), Positives = 77/135 (57%)

Query: 44  DQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLT 103
           + L  WAR  SL  + F   C  +EM      RYDLERFG  P  SPRQ D+ ++ G +T
Sbjct: 8   EPLFNWARKKSLWIVAFCTGCGGIEMPPLMTARYDLERFGIMPDPSPRQYDLFLITGYVT 67

Query: 104 NKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTA 163
            K    +   Y+  P+P+YV++ GSC   GG Y  +Y+ ++  D+ +PVD+Y+ GC P  
Sbjct: 68  PKTLKRIIITYEMAPDPKYVLAHGSCPINGGIYWDAYNAIKQLDKYIPVDVYIAGCMPRP 127

Query: 164 EALIYGILLLQKKIR 178
           EA++ GI  L + I 
Sbjct: 128 EAVMDGIKKLMEMIE 142


>gi|225466336|ref|XP_002274046.1| PREDICTED: similar to NADH-plastoquinone oxidoreductase subunit K,
           partial [Vitis vinifera]
          Length = 155

 Score =  110 bits (275), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 50/89 (56%), Positives = 69/89 (77%), Gaps = 1/89 (1%)

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIV 150
           Q+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++
Sbjct: 1   QADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLI 60

Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           PVD+Y+PGCPP  EA+I  I  L+KKI R
Sbjct: 61  PVDVYLPGCPPKPEAVIDAITKLRKKISR 89


>gi|14520920|ref|NP_126395.1| NADH dehydrogenase subunit B [Pyrococcus abyssi GE5]
 gi|5458137|emb|CAB49626.1| nuoB NADH dehydrogenase I, subunit B [Pyrococcus abyssi GE5]
          Length = 195

 Score =  110 bits (275), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 52/135 (38%), Positives = 78/135 (57%)

Query: 44  DQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLT 103
           + L  WAR  SL  ++F   C  +EM      RYD+ERFG  P  SPRQ D+ ++ G +T
Sbjct: 11  EPLFNWARKKSLWIVSFCTGCGGIEMPPLMTSRYDIERFGMIPDPSPRQYDLFLITGYVT 70

Query: 104 NKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTA 163
            K    +   Y+  P+P+YV++ GSC   GG Y  SY+ ++  D+ +PVD+++ GC P  
Sbjct: 71  PKTLKRIIITYELSPDPKYVLAHGSCPLNGGIYWDSYNAIKHLDKYIPVDVFIAGCMPRP 130

Query: 164 EALIYGILLLQKKIR 178
           EA++ GI  L + I 
Sbjct: 131 EAVLDGIYKLMEMIE 145


>gi|238799239|ref|ZP_04642686.1| Formate hydrogenlyase subunit 7 [Yersinia mollaretii ATCC 43969]
 gi|238716904|gb|EEQ08773.1| Formate hydrogenlyase subunit 7 [Yersinia mollaretii ATCC 43969]
          Length = 250

 Score =  110 bits (275), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 50/118 (42%), Positives = 72/118 (61%), Gaps = 4/118 (3%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E+  +  P +D ERFG    ASPR +D+++  G +T  M S   R Y+  P+P+  +
Sbjct: 35  CEIEIFSSITPLFDTERFGIKVVASPRHADILLFTGAVTRAMRSPALRAYESAPDPKICV 94

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKKIR 178
           S G+C  GGG +H  Y V  G D IVP+D+Y+PGCPPT  A IYG      LL++K++
Sbjct: 95  SYGACGCGGGIFHDLYCVWGGSDTIVPIDVYIPGCPPTPAATIYGFAVALGLLEQKLK 152


>gi|322831876|ref|YP_004211903.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Rahnella sp. Y9602]
 gi|321167077|gb|ADW72776.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Rahnella sp. Y9602]
          Length = 265

 Score =  110 bits (275), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 53/122 (43%), Positives = 71/122 (58%), Gaps = 4/122 (3%)

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           G   C +E+  A  P +D ERFG     SPR +D+++  G +T  M     R +D  P+P
Sbjct: 48  GCNGCEIEIFAAISPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRIPALRAWDSAPDP 107

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176
           +  IS G+C N GG +H  Y V  G D+IVPVD+Y+PGCPPT  A IYG      LL +K
Sbjct: 108 KICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATIYGFAMALGLLDQK 167

Query: 177 IR 178
           I+
Sbjct: 168 IK 169


>gi|332161095|ref|YP_004297672.1| hydrogenase-4 component I [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|325665325|gb|ADZ41969.1| hydrogenase-4 component I [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|330863809|emb|CBX73904.1| formate hydrogenlyase subunit 7 [Yersinia enterocolitica W22703]
          Length = 267

 Score =  110 bits (274), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 49/118 (41%), Positives = 72/118 (61%), Gaps = 4/118 (3%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E+  +  P +D ERFG    ASPR +D+++  G +T  M +   R Y+  P+P+  +
Sbjct: 53  CEIEIFSSITPLFDTERFGIKVVASPRHADILLFTGAVTRAMRTPALRAYESAPDPKICV 112

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKKIR 178
           S G+C  GGG +H  Y V  G D IVP+D+Y+PGCPPT  A IYG      LL++K++
Sbjct: 113 SYGACGCGGGIFHDLYCVWGGSDTIVPIDVYIPGCPPTPAATIYGFAVALGLLEQKLK 170


>gi|317054477|ref|YP_004118502.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Pantoea sp. At-9b]
 gi|316952472|gb|ADU71946.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Pantoea sp. At-9b]
          Length = 254

 Score =  110 bits (274), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 52/122 (42%), Positives = 71/122 (58%), Gaps = 4/122 (3%)

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           G   C +E+  A  P +D ERFG     SPR +D+++  G +T  M S   R +   P+P
Sbjct: 47  GCNGCEIEIFAALTPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDP 106

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176
           +  IS G+C N GG +H  Y V  G D+IVPVD+Y+PGCPPT  A +YG      LL++K
Sbjct: 107 KICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQK 166

Query: 177 IR 178
           I 
Sbjct: 167 IH 168


>gi|219853280|ref|YP_002467712.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanosphaerula
           palustris E1-9c]
 gi|219547539|gb|ACL17989.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanosphaerula
           palustris E1-9c]
          Length = 147

 Score =  110 bits (274), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 44/121 (36%), Positives = 78/121 (64%), Gaps = 4/121 (3%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E++    P YDLERFG     +P+ +D+ +V G +  +  + ++ +YDQMPEP+ VI
Sbjct: 21  CDIEVLACLTPMYDLERFGIINTGNPKHADIFLVTGGVNEQNRAVIKNIYDQMPEPKVVI 80

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKKIRRV 180
           ++G CA  GG +   Y+++ G D+++PVD+Y+PGCP   E +I  ++    +L++K R++
Sbjct: 81  ALGVCATSGGVFRECYNIIGGIDKVIPVDVYLPGCPVRPEQIIDSVVKSLSILEEKQRQL 140

Query: 181 G 181
            
Sbjct: 141 A 141


>gi|318604974|emb|CBY26472.1| formate hydrogenlyase subunit 7 [Yersinia enterocolitica subsp.
           palearctica Y11]
          Length = 267

 Score =  110 bits (274), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 49/118 (41%), Positives = 72/118 (61%), Gaps = 4/118 (3%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E+  +  P +D ERFG    ASPR +D+++  G +T  M +   R Y+  P+P+  +
Sbjct: 53  CEIEIFSSITPLFDTERFGIKVVASPRHADILLFTGAVTRAMRTPALRAYESAPDPKICV 112

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKKIR 178
           S G+C  GGG +H  Y V  G D IVP+D+Y+PGCPPT  A IYG      LL++K++
Sbjct: 113 SYGACGCGGGIFHDLYCVWGGSDTIVPIDVYIPGCPPTPAATIYGFAVALGLLEQKLK 170


>gi|270263099|ref|ZP_06191369.1| hypothetical protein SOD_d01150 [Serratia odorifera 4Rx13]
 gi|270042787|gb|EFA15881.1| hypothetical protein SOD_d01150 [Serratia odorifera 4Rx13]
          Length = 265

 Score =  110 bits (274), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 54/123 (43%), Positives = 71/123 (57%), Gaps = 4/123 (3%)

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           G   C +E+  A  P +D ERFG     SPR +D+++  G +T  M     R +   P+P
Sbjct: 48  GCNGCEIEIFAAISPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRIPAIRAWQASPDP 107

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176
           +  IS G+C N GG +H  Y V  G DRIVPVD+Y+PGCPPT  A IYG      LL++K
Sbjct: 108 KICISYGACGNSGGIFHDLYCVWGGTDRIVPVDVYIPGCPPTPAATIYGFAMALGLLEQK 167

Query: 177 IRR 179
           I R
Sbjct: 168 IHR 170


>gi|260462448|ref|ZP_05810655.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Mesorhizobium
           opportunistum WSM2075]
 gi|259031644|gb|EEW32913.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Mesorhizobium
           opportunistum WSM2075]
          Length = 179

 Score =  110 bits (274), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 47/113 (41%), Positives = 73/113 (64%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +EM   +   +D+ERFG    ASPR +DV++V G +T  M  AL+R YD  P P++V+
Sbjct: 58  CELEMHALNNAFHDIERFGIRFVASPRHADVLLVTGPVTKNMREALKRTYDATPNPKWVV 117

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
           ++G CA  GG +  SY+V+RG    +PVD+++PGCPP    ++ G+L L + +
Sbjct: 118 ALGDCAGNGGCFAGSYAVMRGVSEALPVDLHIPGCPPPPIEILKGLLTLLEGV 170


>gi|123443021|ref|YP_001008384.1| hydrogenase-4 component I [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122089982|emb|CAL12839.1| hydrogenase-4 component I [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 268

 Score =  109 bits (273), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 49/118 (41%), Positives = 72/118 (61%), Gaps = 4/118 (3%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E+  +  P +D ERFG    ASPR +D+++  G +T  M +   R Y+  P+P+  +
Sbjct: 54  CEIEIFSSITPLFDTERFGIKVVASPRHADILLFTGAVTRAMRTPALRAYESAPDPKICV 113

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKKIR 178
           S G+C  GGG +H  Y V  G D IVP+D+Y+PGCPPT  A IYG      LL++K++
Sbjct: 114 SYGACGCGGGIFHDLYCVWGGSDTIVPIDVYIPGCPPTPAATIYGFAVALGLLEQKLK 171


>gi|57641152|ref|YP_183630.1| NADH dehydrogenase subunit B [Thermococcus kodakarensis KOD1]
 gi|57159476|dbj|BAD85406.1| membrane bound hydrogenase, NiFe-hydrogenase small subunit
           [Thermococcus kodakarensis KOD1]
          Length = 193

 Score =  109 bits (273), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 79/135 (58%)

Query: 44  DQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLT 103
           + L  WAR  SL  + F   C  +EM   +  RYD ERFG  P  +PR +D+ ++ G +T
Sbjct: 18  EPLFRWARKKSLWIVAFCTGCGGIEMPPLATARYDFERFGIMPNPAPRMADLFLITGYVT 77

Query: 104 NKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTA 163
            K    +   Y+ M +P+YV++ GSC   GG Y  SY+VV+  D+ +P+D+ + GC P  
Sbjct: 78  PKTLKRIIITYEMMQDPKYVLAHGSCPINGGVYWDSYNVVKQLDKYIPIDVAIAGCMPRP 137

Query: 164 EALIYGILLLQKKIR 178
           EA++ GI+ + +KI 
Sbjct: 138 EAVMDGIMEIMRKIE 152


>gi|240102769|ref|YP_002959078.1| NADH dehydrogenase subunit B [Thermococcus gammatolerans EJ3]
 gi|239910323|gb|ACS33214.1| membrane bound oxidoreductase, MbxJ subunit (MbxJ) [Thermococcus
           gammatolerans EJ3]
          Length = 194

 Score =  109 bits (273), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 79/135 (58%)

Query: 44  DQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLT 103
           + L  WAR  SL  + F   C  +EM   +  RYD ERFG  P  +PR +D+ ++ G +T
Sbjct: 19  EPLFRWARKKSLWIVAFCTGCGGIEMPPLATARYDFERFGIMPNPAPRMADLFLITGYVT 78

Query: 104 NKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTA 163
            K    +   Y+ M +P+YV++ GSC   GG Y  SY+VV+  D+ +P+D+ + GC P  
Sbjct: 79  PKTLKRIIITYEMMQDPKYVLAHGSCPINGGVYWDSYNVVKQLDKYIPIDVAIAGCMPRP 138

Query: 164 EALIYGILLLQKKIR 178
           EA++ GI+ + +KI 
Sbjct: 139 EAVMDGIMEIMRKIE 153


>gi|238755287|ref|ZP_04616631.1| Formate hydrogenlyase subunit 7 [Yersinia ruckeri ATCC 29473]
 gi|238706521|gb|EEP98894.1| Formate hydrogenlyase subunit 7 [Yersinia ruckeri ATCC 29473]
          Length = 265

 Score =  109 bits (273), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 53/121 (43%), Positives = 70/121 (57%), Gaps = 4/121 (3%)

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           G   C +E+  A  P +D ERFG     SPR +D+++  G +T  M     R +D  P+P
Sbjct: 48  GCNGCEIEIFAAISPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRIPALRAWDSAPDP 107

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176
           +  IS G+C N GG +H  Y V  G D+IVPVD+Y+PGCPPT  A IYG      LL +K
Sbjct: 108 KISISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATIYGFAMALGLLDQK 167

Query: 177 I 177
           I
Sbjct: 168 I 168


>gi|332157678|ref|YP_004422957.1| NADH dehydrogenase subunit B [Pyrococcus sp. NA2]
 gi|331033141|gb|AEC50953.1| NADH dehydrogenase subunit B [Pyrococcus sp. NA2]
          Length = 192

 Score =  109 bits (272), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 52/135 (38%), Positives = 77/135 (57%)

Query: 44  DQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLT 103
           + L  WAR  SL  + F   C  +EM      RYD+ERFG  P  SPRQ D+ ++ G +T
Sbjct: 8   EPLFNWARKKSLWIVAFCTGCGGIEMPPLMTARYDIERFGIMPDPSPRQYDLFLITGYVT 67

Query: 104 NKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTA 163
            K    +   Y+  P+P+YV++ GSC   GG Y  SY+ ++  D+ +PVD+++ GC P  
Sbjct: 68  PKTLKRIIITYELSPDPKYVLAHGSCPLNGGIYWDSYNAIKHLDKYIPVDVFIAGCMPRP 127

Query: 164 EALIYGILLLQKKIR 178
           EA++ GI  L + I 
Sbjct: 128 EAVMDGIYKLMEMIE 142


>gi|238749929|ref|ZP_04611433.1| Formate hydrogenlyase subunit 7 [Yersinia rohdei ATCC 43380]
 gi|238711858|gb|EEQ04072.1| Formate hydrogenlyase subunit 7 [Yersinia rohdei ATCC 43380]
          Length = 236

 Score =  109 bits (272), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 49/118 (41%), Positives = 72/118 (61%), Gaps = 4/118 (3%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E+  +  P +D ERFG    ASPR +D+++  G +T  M +   R Y+  P+P+  +
Sbjct: 21  CEIEIFSSITPVFDTERFGIKVVASPRHADILLFTGAVTRAMRTPALRAYESAPDPKICV 80

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKKIR 178
           S G+C  GGG +H  Y V  G D IVP+D+Y+PGCPPT  A IYG      LL++K++
Sbjct: 81  SYGACGCGGGIFHDLYCVWGGSDTIVPIDVYIPGCPPTPAATIYGFAVALGLLEQKLK 138


>gi|238761067|ref|ZP_04622044.1| Formate hydrogenlyase subunit 7 [Yersinia kristensenii ATCC 33638]
 gi|238761320|ref|ZP_04622296.1| Formate hydrogenlyase subunit 7 [Yersinia kristensenii ATCC 33638]
 gi|238700294|gb|EEP93035.1| Formate hydrogenlyase subunit 7 [Yersinia kristensenii ATCC 33638]
 gi|238700547|gb|EEP93287.1| Formate hydrogenlyase subunit 7 [Yersinia kristensenii ATCC 33638]
          Length = 254

 Score =  109 bits (272), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 49/118 (41%), Positives = 72/118 (61%), Gaps = 4/118 (3%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E+  +  P +D ERFG    ASPR +D+++  G +T  M +   R Y+  P+P+  +
Sbjct: 39  CEIEIFSSITPVFDTERFGIKVVASPRHADILLFTGAVTRAMRTPALRAYESAPDPKICV 98

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKKIR 178
           S G+C  GGG +H  Y V  G D IVP+D+Y+PGCPPT  A IYG      LL++K++
Sbjct: 99  SYGACGCGGGIFHDLYCVWGGSDTIVPIDVYIPGCPPTPAATIYGFAVALGLLEQKLK 156


>gi|282856067|ref|ZP_06265353.1| hydrogenase-4 component I [Pyramidobacter piscolens W5455]
 gi|282586088|gb|EFB91370.1| hydrogenase-4 component I [Pyramidobacter piscolens W5455]
          Length = 156

 Score =  109 bits (272), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 48/106 (45%), Positives = 72/106 (67%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E++ +  PRYD+ER G     +PR +DV++V G +T  M   LR++Y Q+P+P+ VI
Sbjct: 27  CDIEIVASLTPRYDIERLGLKLTGTPRHADVLLVTGPVTRFMEPKLRQIYAQIPDPKVVI 86

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGI 170
           ++G+CA  G  ++ SY++V   DRIVPVD+YV GC    EALI G+
Sbjct: 87  AVGNCATSGDVFYKSYNLVGPVDRIVPVDVYVHGCAIRPEALIEGV 132


>gi|238757224|ref|ZP_04618411.1| Formate hydrogenlyase subunit 7 [Yersinia aldovae ATCC 35236]
 gi|238704602|gb|EEP97132.1| Formate hydrogenlyase subunit 7 [Yersinia aldovae ATCC 35236]
          Length = 224

 Score =  109 bits (272), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 49/118 (41%), Positives = 72/118 (61%), Gaps = 4/118 (3%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E+  +  P +D ERFG    ASPR +D+++  G +T  M +   R Y+  P+P+  +
Sbjct: 9   CEIEIFSSITPVFDTERFGIKVVASPRHADILLFTGAVTRAMRTPALRAYESAPDPKICV 68

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKKIR 178
           S G+C  GGG +H  Y V  G D IVP+D+Y+PGCPPT  A IYG      LL++K++
Sbjct: 69  SYGACGCGGGIFHDLYCVWGGSDTIVPIDVYIPGCPPTPAATIYGFAVALGLLEQKLK 126


>gi|268324502|emb|CBH38090.1| F420H2-quinone oxidoreductase, subunit BCD fusion [uncultured
           archaeon]
          Length = 772

 Score =  109 bits (272), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 57/129 (44%), Positives = 77/129 (59%), Gaps = 1/129 (0%)

Query: 49  WARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108
           W+   SL    F  +CC VE+  A    YD ER G       RQS+ +IV GT+T KMA 
Sbjct: 23  WSSKWSLWPCHFITSCCGVELAHAFASGYDGERLGTLNLGISRQSNYIIVEGTITRKMAR 82

Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168
           AL+ V+ QMP+P++V  +G+C   GG +  SY++    D IVPVD ++PGCP T EAL+ 
Sbjct: 83  ALQFVWGQMPDPKFVNVIGACGQRGGIFWNSYNITHPSD-IVPVDAFIPGCPITPEALLR 141

Query: 169 GILLLQKKI 177
           G+   Q KI
Sbjct: 142 GVRATQDKI 150


>gi|260597692|ref|YP_003210263.1| formate hydrogenlyase subunit 7 [Cronobacter turicensis z3032]
 gi|260216869|emb|CBA30407.1| Formate hydrogenlyase subunit 7 [Cronobacter turicensis z3032]
          Length = 254

 Score =  109 bits (272), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 51/122 (41%), Positives = 71/122 (58%), Gaps = 4/122 (3%)

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           G   C +E+     P +D ERFG     SPR +D+++  G +T  M S   R ++  P+P
Sbjct: 46  GCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWESAPDP 105

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176
           +  IS G+C N GG +H  Y V  G D+IVPVD+Y+PGCPPT  A +YG      LL++K
Sbjct: 106 KICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQK 165

Query: 177 IR 178
           I 
Sbjct: 166 IH 167


>gi|156934233|ref|YP_001438149.1| hypothetical protein ESA_02063 [Cronobacter sakazakii ATCC BAA-894]
 gi|156532487|gb|ABU77313.1| hypothetical protein ESA_02063 [Cronobacter sakazakii ATCC BAA-894]
          Length = 254

 Score =  109 bits (272), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 51/122 (41%), Positives = 71/122 (58%), Gaps = 4/122 (3%)

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           G   C +E+     P +D ERFG     SPR +D+++  G +T  M S   R ++  P+P
Sbjct: 46  GCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWESAPDP 105

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176
           +  IS G+C N GG +H  Y V  G D+IVPVD+Y+PGCPPT  A +YG      LL++K
Sbjct: 106 KICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQK 165

Query: 177 IR 178
           I 
Sbjct: 166 IH 167


>gi|238793444|ref|ZP_04637069.1| Formate hydrogenlyase subunit 7 [Yersinia intermedia ATCC 29909]
 gi|238727217|gb|EEQ18746.1| Formate hydrogenlyase subunit 7 [Yersinia intermedia ATCC 29909]
          Length = 262

 Score =  109 bits (272), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 50/122 (40%), Positives = 73/122 (59%), Gaps = 4/122 (3%)

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           G   C +E+  +  P +D ERFG    ASPR +D+++  G +T  M +   R Y+  P+P
Sbjct: 43  GCNGCEIEIFSSITPLFDTERFGIKVVASPRHADILLFTGAVTRAMRAPALRAYESAPDP 102

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176
           +  +S G+C  GGG +H  Y V  G D IVP+D+Y+PGCPPT  A IYG      LL++K
Sbjct: 103 KICVSYGACGCGGGIFHDLYCVWGGSDTIVPIDVYIPGCPPTPAATIYGFAVALGLLEQK 162

Query: 177 IR 178
           ++
Sbjct: 163 LK 164


>gi|261868405|ref|YP_003256327.1| hydrogenase-4 subunit I [Aggregatibacter actinomycetemcomitans
           D11S-1]
 gi|261413737|gb|ACX83108.1| hydrogenase-4 component I [Aggregatibacter actinomycetemcomitans
           D11S-1]
          Length = 258

 Score =  109 bits (272), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 51/122 (41%), Positives = 71/122 (58%), Gaps = 4/122 (3%)

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           G   C +E+     P +D ERFG    ASPR +D+++  G +T  M +   R Y   P+P
Sbjct: 46  GCNGCEIEIFSTITPTFDAERFGIKVVASPRHADILLFTGAVTRAMRTPAMRAYQAAPDP 105

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176
           +  IS G+C  GGG +H  Y V  G D+IVP+D+Y+PGCPPT  A IYG      LL +K
Sbjct: 106 KICISYGACGCGGGIFHDLYCVWGGSDQIVPIDVYIPGCPPTPAATIYGFAMALGLLDQK 165

Query: 177 IR 178
           ++
Sbjct: 166 LK 167


>gi|238784034|ref|ZP_04628049.1| Formate hydrogenlyase subunit 7 [Yersinia bercovieri ATCC 43970]
 gi|238715011|gb|EEQ07008.1| Formate hydrogenlyase subunit 7 [Yersinia bercovieri ATCC 43970]
          Length = 237

 Score =  109 bits (272), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 50/118 (42%), Positives = 71/118 (60%), Gaps = 4/118 (3%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E+  +  P +D ERFG    ASPR +D+++  G +T  M S   R Y   P+P+  I
Sbjct: 22  CEIEIFSSITPLFDTERFGIKVVASPRHADILLFTGAVTRAMRSPALRAYQSAPDPKICI 81

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKKIR 178
           S G+C  GGG +H  Y V  G D IVP+D+Y+PGCPPT  A +YG      LL++K++
Sbjct: 82  SYGACGCGGGIFHDLYCVWGGSDTIVPIDVYIPGCPPTPAATLYGFAVALGLLEQKLK 139


>gi|239618414|ref|YP_002941736.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Kosmotoga olearia
           TBF 19.5.1]
 gi|239507245|gb|ACR80732.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Kosmotoga olearia
           TBF 19.5.1]
          Length = 179

 Score =  108 bits (271), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 55/142 (38%), Positives = 83/142 (58%), Gaps = 6/142 (4%)

Query: 41  TSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAG 100
           ++ +++    R  SL  + +   C A+E+      R+D+ERFG  P A+PRQ+D++++ G
Sbjct: 6   SAWNKVANMLRARSLWMLYYCTGCGAIELPPTMTARFDMERFGIGPMATPRQADILLITG 65

Query: 101 TLTNKMASALRRV---YDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
            L+ K    LRRV   Y+QM  P+YV+  GSC   GG Y  SY+ +   D  +PVD+Y+ 
Sbjct: 66  YLSTK---TLRRVIYTYEQMQAPKYVVGFGSCTINGGIYFDSYATINRLDLYLPVDLYLA 122

Query: 158 GCPPTAEALIYGILLLQKKIRR 179
           GC P  EA++ G   L KKI R
Sbjct: 123 GCMPRPEAIVNGFKELMKKIDR 144


>gi|294102253|ref|YP_003554111.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Aminobacterium
           colombiense DSM 12261]
 gi|293617233|gb|ADE57387.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Aminobacterium
           colombiense DSM 12261]
          Length = 153

 Score =  108 bits (271), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 46/106 (43%), Positives = 70/106 (66%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E++    PRYD+ERFG     +PR +DV++V G +T  M   L R+Y+Q+P+P+ V+
Sbjct: 27  CDIEIVATISPRYDIERFGMKLVGTPRHADVLVVTGPVTKYMKDRLLRIYNQIPDPKVVV 86

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGI 170
            +G+C   G  ++ SYS+    D I+PVD+YV GCPP  EA+I G+
Sbjct: 87  VVGNCGASGDVFYKSYSLEGPVDNIIPVDVYVHGCPPRPEAIIEGV 132


>gi|74313286|ref|YP_311705.1| hydrogenase activity [Shigella sonnei Ss046]
 gi|73856763|gb|AAZ89470.1| hydrogenase activity [Shigella sonnei Ss046]
 gi|323167106|gb|EFZ52824.1| formate hydrogenlyase subunit 7 [Shigella sonnei 53G]
          Length = 255

 Score =  108 bits (271), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 52/125 (41%), Positives = 71/125 (56%), Gaps = 4/125 (3%)

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           G   C +E+     P +D ERFG     SPR +D+++  G +T  M S   R +   P+P
Sbjct: 47  GCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDP 106

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176
           +  IS G+C N GG +H  Y V  G D+IVPVD+Y+PGCPPT  A +YG      LL++K
Sbjct: 107 KICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQK 166

Query: 177 IRRVG 181
           I   G
Sbjct: 167 IHARG 171


>gi|312973071|ref|ZP_07787244.1| formate hydrogenlyase subunit 7 [Escherichia coli 1827-70]
 gi|310333013|gb|EFQ00227.1| formate hydrogenlyase subunit 7 [Escherichia coli 1827-70]
 gi|315615107|gb|EFU95744.1| formate hydrogenlyase subunit 7 [Escherichia coli 3431]
          Length = 239

 Score =  108 bits (271), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 52/125 (41%), Positives = 71/125 (56%), Gaps = 4/125 (3%)

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           G   C +E+     P +D ERFG     SPR +D+++  G +T  M S   R +   P+P
Sbjct: 31  GCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDP 90

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176
           +  IS G+C N GG +H  Y V  G D+IVPVD+Y+PGCPPT  A +YG      LL++K
Sbjct: 91  KICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQK 150

Query: 177 IRRVG 181
           I   G
Sbjct: 151 IHARG 155


>gi|323180140|gb|EFZ65692.1| formate hydrogenlyase subunit 7 [Escherichia coli 1180]
          Length = 239

 Score =  108 bits (271), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 52/125 (41%), Positives = 71/125 (56%), Gaps = 4/125 (3%)

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           G   C +E+     P +D ERFG     SPR +D+++  G +T  M S   R +   P+P
Sbjct: 31  GCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDP 90

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176
           +  IS G+C N GG +H  Y V  G D+IVPVD+Y+PGCPPT  A +YG      LL++K
Sbjct: 91  KICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQK 150

Query: 177 IRRVG 181
           I   G
Sbjct: 151 IHARG 155


>gi|320173428|gb|EFW48627.1| Formate hydrogenlyase subunit 7 [Shigella dysenteriae CDC 74-1112]
          Length = 255

 Score =  108 bits (271), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 52/125 (41%), Positives = 71/125 (56%), Gaps = 4/125 (3%)

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           G   C +E+     P +D ERFG     SPR +D+++  G +T  M S   R +   P+P
Sbjct: 47  GCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDP 106

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176
           +  IS G+C N GG +H  Y V  G D+IVPVD+Y+PGCPPT  A +YG      LL++K
Sbjct: 107 KICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQK 166

Query: 177 IRRVG 181
           I   G
Sbjct: 167 IHARG 171


>gi|170765639|ref|ZP_02900450.1| formate hydrogenlyase, subunit G [Escherichia albertii TW07627]
 gi|170124785|gb|EDS93716.1| formate hydrogenlyase, subunit G [Escherichia albertii TW07627]
          Length = 255

 Score =  108 bits (271), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 52/125 (41%), Positives = 71/125 (56%), Gaps = 4/125 (3%)

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           G   C +E+     P +D ERFG     SPR +D+++  G +T  M S   R +   P+P
Sbjct: 47  GCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDP 106

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176
           +  IS G+C N GG +H  Y V  G D+IVPVD+Y+PGCPPT  A +YG      LL++K
Sbjct: 107 KICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQK 166

Query: 177 IRRVG 181
           I   G
Sbjct: 167 IHARG 171


>gi|323139190|ref|ZP_08074246.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methylocystis sp.
           ATCC 49242]
 gi|322395573|gb|EFX98118.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methylocystis sp.
           ATCC 49242]
          Length = 166

 Score =  108 bits (270), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 50/109 (45%), Positives = 71/109 (65%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E+   S P YDLERFG    ASPR +DV++V G +T  M  AL+R YD  P P++V+
Sbjct: 49  CELEIHALSNPYYDLERFGLRFVASPRHADVLMVTGPVTKNMCEALQRTYDATPNPKWVV 108

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLL 173
           ++G CA  GG +  SY+ V    ++VPVD++V GCPP   AL+ G++ L
Sbjct: 109 AVGDCAFDGGVFAGSYACVGAVTKVVPVDLHVRGCPPDPIALLKGLIAL 157


>gi|118103240|ref|XP_001234054.1| PREDICTED: hypothetical protein [Gallus gallus]
          Length = 187

 Score =  108 bits (270), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 48/51 (94%), Positives = 50/51 (98%)

Query: 129 CANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           CANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQKKI+R
Sbjct: 127 CANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKIKR 177


>gi|194432976|ref|ZP_03065259.1| formate hydrogenlyase, subunit G [Shigella dysenteriae 1012]
 gi|300941095|ref|ZP_07155607.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 21-1]
 gi|194418703|gb|EDX34789.1| formate hydrogenlyase, subunit G [Shigella dysenteriae 1012]
 gi|300454138|gb|EFK17631.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 21-1]
 gi|323966866|gb|EGB62295.1| NADH ubiquinone oxidoreductase [Escherichia coli M863]
 gi|323978671|gb|EGB73753.1| NADH ubiquinone oxidoreductase [Escherichia coli TW10509]
 gi|324111344|gb|EGC05326.1| NADH ubiquinone oxidoreductase [Escherichia fergusonii B253]
 gi|325496240|gb|EGC94099.1| formate hydrogenlyase, subunit G [Escherichia fergusonii ECD227]
 gi|327251442|gb|EGE63128.1| formate hydrogenlyase subunit 7 [Escherichia coli STEC_7v]
 gi|332087440|gb|EGI92568.1| formate hydrogenlyase subunit 7 [Shigella boydii 5216-82]
 gi|332088649|gb|EGI93762.1| formate hydrogenlyase subunit 7 [Shigella dysenteriae 155-74]
          Length = 255

 Score =  108 bits (270), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 52/125 (41%), Positives = 71/125 (56%), Gaps = 4/125 (3%)

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           G   C +E+     P +D ERFG     SPR +D+++  G +T  M S   R +   P+P
Sbjct: 47  GCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDP 106

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176
           +  IS G+C N GG +H  Y V  G D+IVPVD+Y+PGCPPT  A +YG      LL++K
Sbjct: 107 KICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQK 166

Query: 177 IRRVG 181
           I   G
Sbjct: 167 IHARG 171


>gi|320186505|gb|EFW61233.1| Formate hydrogenlyase subunit 7 [Shigella flexneri CDC 796-83]
          Length = 255

 Score =  108 bits (270), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 52/125 (41%), Positives = 71/125 (56%), Gaps = 4/125 (3%)

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           G   C +E+     P +D ERFG     SPR +D+++  G +T  M S   R +   P+P
Sbjct: 47  GCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDP 106

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176
           +  IS G+C N GG +H  Y V  G D+IVPVD+Y+PGCPPT  A +YG      LL++K
Sbjct: 107 KICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQK 166

Query: 177 IRRVG 181
           I   G
Sbjct: 167 IHARG 171


>gi|320180858|gb|EFW55781.1| Formate hydrogenlyase subunit 7 [Shigella boydii ATCC 9905]
          Length = 255

 Score =  108 bits (270), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 52/125 (41%), Positives = 71/125 (56%), Gaps = 4/125 (3%)

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           G   C +E+     P +D ERFG     SPR +D+++  G +T  M S   R +   P+P
Sbjct: 47  GCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDP 106

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176
           +  IS G+C N GG +H  Y V  G D+IVPVD+Y+PGCPPT  A +YG      LL++K
Sbjct: 107 KICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMVLGLLEQK 166

Query: 177 IRRVG 181
           I   G
Sbjct: 167 IHARG 171


>gi|218547773|ref|YP_002381564.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit
           [Escherichia fergusonii ATCC 35469]
 gi|218355314|emb|CAQ87921.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit
           [Escherichia fergusonii ATCC 35469]
          Length = 255

 Score =  108 bits (270), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 52/125 (41%), Positives = 71/125 (56%), Gaps = 4/125 (3%)

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           G   C +E+     P +D ERFG     SPR +D+++  G +T  M S   R +   P+P
Sbjct: 47  GCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDP 106

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176
           +  IS G+C N GG +H  Y V  G D+IVPVD+Y+PGCPPT  A +YG      LL++K
Sbjct: 107 KICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQK 166

Query: 177 IRRVG 181
           I   G
Sbjct: 167 IHARG 171


>gi|26249118|ref|NP_755158.1| formate hydrogenlyase subunit 7 [Escherichia coli CFT073]
 gi|91212079|ref|YP_542065.1| formate hydrogenlyase subunit 7 [Escherichia coli UTI89]
 gi|110642842|ref|YP_670572.1| formate hydrogenlyase-3 component G [Escherichia coli 536]
 gi|117624951|ref|YP_853939.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit
           [Escherichia coli APEC O1]
 gi|157157238|ref|YP_001464031.1| formate hydrogenlyase, subunit G [Escherichia coli E24377A]
 gi|170683663|ref|YP_001744868.1| formate hydrogenlyase, subunit G [Escherichia coli SMS-3-5]
 gi|191166819|ref|ZP_03028645.1| formate hydrogenlyase, subunit G [Escherichia coli B7A]
 gi|191171381|ref|ZP_03032930.1| formate hydrogenlyase, subunit G [Escherichia coli F11]
 gi|193065043|ref|ZP_03046118.1| formate hydrogenlyase, subunit G [Escherichia coli E22]
 gi|193069668|ref|ZP_03050620.1| formate hydrogenlyase, subunit G [Escherichia coli E110019]
 gi|194427855|ref|ZP_03060401.1| formate hydrogenlyase, subunit G [Escherichia coli B171]
 gi|209920158|ref|YP_002294242.1| formate hydrogenlyase subunit [Escherichia coli SE11]
 gi|218555263|ref|YP_002388176.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit
           [Escherichia coli IAI1]
 gi|218559709|ref|YP_002392622.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit
           [Escherichia coli S88]
 gi|218690843|ref|YP_002399055.1| hydrogenase 3 and formate hydrogenase complex subunit HycG
           [Escherichia coli ED1a]
 gi|218701211|ref|YP_002408840.1| hydrogenase 3 and formate hydrogenase complex subunit HycG
           [Escherichia coli IAI39]
 gi|218706213|ref|YP_002413732.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit
           [Escherichia coli UMN026]
 gi|227888257|ref|ZP_04006062.1| hydrogenase activity [Escherichia coli 83972]
 gi|237706658|ref|ZP_04537139.1| formate hydrogenlyase subunit 7 [Escherichia sp. 3_2_53FAA]
 gi|256019502|ref|ZP_05433367.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit
           [Shigella sp. D9]
 gi|260845362|ref|YP_003223140.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit
           [Escherichia coli O103:H2 str. 12009]
 gi|293406211|ref|ZP_06650137.1| formate hydrogenlyase subunit 7 [Escherichia coli FVEC1412]
 gi|293412077|ref|ZP_06654800.1| conserved hypothetical protein [Escherichia coli B354]
 gi|293449035|ref|ZP_06663456.1| hycG [Escherichia coli B088]
 gi|298381948|ref|ZP_06991545.1| formate hydrogenlyase subunit 7 [Escherichia coli FVEC1302]
 gi|300815877|ref|ZP_07096101.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 107-1]
 gi|300899958|ref|ZP_07118161.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 198-1]
 gi|300906778|ref|ZP_07124460.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 84-1]
 gi|300922237|ref|ZP_07138363.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 182-1]
 gi|300975045|ref|ZP_07172846.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 200-1]
 gi|300976821|ref|ZP_07173638.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 45-1]
 gi|301027129|ref|ZP_07190498.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 69-1]
 gi|301049524|ref|ZP_07196482.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 185-1]
 gi|301305390|ref|ZP_07211484.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 124-1]
 gi|301326246|ref|ZP_07219629.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 78-1]
 gi|306812403|ref|ZP_07446601.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit
           [Escherichia coli NC101]
 gi|309795179|ref|ZP_07689598.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 145-7]
 gi|331658827|ref|ZP_08359769.1| formate hydrogenlyase subunit 7 (FHL subunit 7)
           (Hydrogenase-3component G) [Escherichia coli TA206]
 gi|331684332|ref|ZP_08384924.1| formate hydrogenlyase subunit 7 (FHL subunit 7)
           (Hydrogenase-3component G) [Escherichia coli H299]
 gi|332280624|ref|ZP_08393037.1| hydrogenase 3 and formate hydrogenase complex [Shigella sp. D9]
 gi|26109525|gb|AAN81728.1|AE016765_130 Formate hydrogenlyase subunit 7 [Escherichia coli CFT073]
 gi|91073653|gb|ABE08534.1| formate hydrogenlyase subunit 7 [Escherichia coli UTI89]
 gi|110344434|gb|ABG70671.1| formate hydrogenlyase-3 component G [Escherichia coli 536]
 gi|115514075|gb|ABJ02150.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit
           [Escherichia coli APEC O1]
 gi|157079268|gb|ABV18976.1| formate hydrogenlyase, subunit G [Escherichia coli E24377A]
 gi|170521381|gb|ACB19559.1| formate hydrogenlyase, subunit G [Escherichia coli SMS-3-5]
 gi|190903190|gb|EDV62913.1| formate hydrogenlyase, subunit G [Escherichia coli B7A]
 gi|190908315|gb|EDV67905.1| formate hydrogenlyase, subunit G [Escherichia coli F11]
 gi|192927340|gb|EDV81959.1| formate hydrogenlyase, subunit G [Escherichia coli E22]
 gi|192957031|gb|EDV87482.1| formate hydrogenlyase, subunit G [Escherichia coli E110019]
 gi|194414088|gb|EDX30364.1| formate hydrogenlyase, subunit G [Escherichia coli B171]
 gi|209913417|dbj|BAG78491.1| formate hydrogenlyase subunit [Escherichia coli SE11]
 gi|218362031|emb|CAQ99638.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit
           [Escherichia coli IAI1]
 gi|218366478|emb|CAR04230.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit
           [Escherichia coli S88]
 gi|218371197|emb|CAR19028.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit
           [Escherichia coli IAI39]
 gi|218428407|emb|CAR09332.2| hydrogenase 3 and formate hydrogenase complex, HycG subunit
           [Escherichia coli ED1a]
 gi|218433310|emb|CAR14210.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit
           [Escherichia coli UMN026]
 gi|222034413|emb|CAP77155.1| Formate hydrogenlyase subunit 7 [Escherichia coli LF82]
 gi|226899698|gb|EEH85957.1| formate hydrogenlyase subunit 7 [Escherichia sp. 3_2_53FAA]
 gi|227834526|gb|EEJ44992.1| hydrogenase activity [Escherichia coli 83972]
 gi|257760509|dbj|BAI32006.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit
           [Escherichia coli O103:H2 str. 12009]
 gi|284922655|emb|CBG35743.1| formate hydrogenlyase subunit 7 [Escherichia coli 042]
 gi|291322125|gb|EFE61554.1| hycG [Escherichia coli B088]
 gi|291426217|gb|EFE99249.1| formate hydrogenlyase subunit 7 [Escherichia coli FVEC1412]
 gi|291468848|gb|EFF11339.1| conserved hypothetical protein [Escherichia coli B354]
 gi|294489961|gb|ADE88717.1| formate hydrogenlyase, subunit G [Escherichia coli IHE3034]
 gi|298277088|gb|EFI18604.1| formate hydrogenlyase subunit 7 [Escherichia coli FVEC1302]
 gi|300298755|gb|EFJ55140.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 185-1]
 gi|300308813|gb|EFJ63333.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 200-1]
 gi|300356467|gb|EFJ72337.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 198-1]
 gi|300395161|gb|EFJ78699.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 69-1]
 gi|300401472|gb|EFJ85010.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 84-1]
 gi|300410007|gb|EFJ93545.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 45-1]
 gi|300421367|gb|EFK04678.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 182-1]
 gi|300531806|gb|EFK52868.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 107-1]
 gi|300839310|gb|EFK67070.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 124-1]
 gi|300847091|gb|EFK74851.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 78-1]
 gi|305854441|gb|EFM54879.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit
           [Escherichia coli NC101]
 gi|307554694|gb|ADN47469.1| formate hydrogenlyase subunit 7 [Escherichia coli ABU 83972]
 gi|307625710|gb|ADN70014.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit
           [Escherichia coli UM146]
 gi|308121150|gb|EFO58412.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 145-7]
 gi|312947248|gb|ADR28075.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit
           [Escherichia coli O83:H1 str. NRG 857C]
 gi|315254501|gb|EFU34469.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 85-1]
 gi|315289284|gb|EFU48679.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 110-3]
 gi|315293724|gb|EFU53076.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 153-1]
 gi|315298793|gb|EFU58047.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 16-3]
 gi|320194857|gb|EFW69486.1| Formate hydrogenlyase subunit 7 [Escherichia coli WV_060327]
 gi|320202369|gb|EFW76939.1| Formate hydrogenlyase subunit 7 [Escherichia coli EC4100B]
 gi|323159853|gb|EFZ45824.1| formate hydrogenlyase subunit 7 [Escherichia coli E128010]
 gi|323183246|gb|EFZ68643.1| formate hydrogenlyase subunit 7 [Escherichia coli 1357]
 gi|323188867|gb|EFZ74152.1| formate hydrogenlyase subunit 7 [Escherichia coli RN587/1]
 gi|323946400|gb|EGB42428.1| NADH ubiquinone oxidoreductase [Escherichia coli H120]
 gi|323951062|gb|EGB46938.1| NADH ubiquinone oxidoreductase [Escherichia coli H252]
 gi|323957069|gb|EGB52794.1| NADH ubiquinone oxidoreductase [Escherichia coli H263]
 gi|324005681|gb|EGB74900.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 57-2]
 gi|324013674|gb|EGB82893.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 60-1]
 gi|324017032|gb|EGB86251.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 117-3]
 gi|324119969|gb|EGC13847.1| NADH ubiquinone oxidoreductase [Escherichia coli E1167]
 gi|331053409|gb|EGI25438.1| formate hydrogenlyase subunit 7 (FHL subunit 7)
           (Hydrogenase-3component G) [Escherichia coli TA206]
 gi|331077947|gb|EGI49153.1| formate hydrogenlyase subunit 7 (FHL subunit 7)
           (Hydrogenase-3component G) [Escherichia coli H299]
 gi|332102976|gb|EGJ06322.1| hydrogenase 3 and formate hydrogenase complex [Shigella sp. D9]
          Length = 255

 Score =  108 bits (270), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 52/125 (41%), Positives = 71/125 (56%), Gaps = 4/125 (3%)

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           G   C +E+     P +D ERFG     SPR +D+++  G +T  M S   R +   P+P
Sbjct: 47  GCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDP 106

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176
           +  IS G+C N GG +H  Y V  G D+IVPVD+Y+PGCPPT  A +YG      LL++K
Sbjct: 107 KICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQK 166

Query: 177 IRRVG 181
           I   G
Sbjct: 167 IHARG 171


>gi|293392055|ref|ZP_06636389.1| hydrogenase-4 component I [Aggregatibacter actinomycetemcomitans
           D7S-1]
 gi|290952589|gb|EFE02708.1| hydrogenase-4 component I [Aggregatibacter actinomycetemcomitans
           D7S-1]
          Length = 258

 Score =  108 bits (270), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 51/122 (41%), Positives = 71/122 (58%), Gaps = 4/122 (3%)

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           G   C +E+     P +D ERFG    ASPR +D+++  G +T  M +   R Y   P+P
Sbjct: 46  GCNGCEIEIFSTITPTFDAERFGIKVVASPRHADILLFTGAVTRAMRTPAIRAYQAAPDP 105

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176
           +  IS G+C  GGG +H  Y V  G D+IVP+D+Y+PGCPPT  A IYG      LL +K
Sbjct: 106 KICISYGACGCGGGIFHDLYCVWGGSDQIVPIDVYIPGCPPTPAATIYGFAMALGLLDQK 165

Query: 177 IR 178
           ++
Sbjct: 166 LK 167


>gi|213610076|ref|ZP_03369902.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
          Length = 175

 Score =  108 bits (270), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 50/118 (42%), Positives = 69/118 (58%), Gaps = 4/118 (3%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E+     P +D ERFG     SPR +D+++  G +T  M S   R +   P+P+  I
Sbjct: 51  CEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICI 110

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKKIR 178
           S G+C N GG +H  Y V  G D+IVPVD+Y+PGCPPT  A +YG      LL++KI 
Sbjct: 111 SYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIH 168


>gi|317493922|ref|ZP_07952339.1| NADH ubiquinone oxidoreductase [Enterobacteriaceae bacterium
           9_2_54FAA]
 gi|316918249|gb|EFV39591.1| NADH ubiquinone oxidoreductase [Enterobacteriaceae bacterium
           9_2_54FAA]
          Length = 274

 Score =  108 bits (270), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 52/122 (42%), Positives = 71/122 (58%), Gaps = 4/122 (3%)

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           G   C +E+  A  P +D ERFG     SPR +D+++  G +T  M     R Y+  P+P
Sbjct: 58  GCNGCEIEIFSALTPLFDTERFGIKVVPSPRHADILLFTGAVTRSMRIPAIRAYESAPDP 117

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176
           + VIS G+C   GG +H  Y V  G D+IVPVD+Y+PGCPPT  A IYG      LL +K
Sbjct: 118 KIVISYGACGCSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATIYGFAMALGLLDQK 177

Query: 177 IR 178
           ++
Sbjct: 178 LK 179


>gi|16130626|ref|NP_417199.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit
           [Escherichia coli str. K-12 substr. MG1655]
 gi|89109506|ref|AP_003286.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit
           [Escherichia coli str. K-12 substr. W3110]
 gi|157162165|ref|YP_001459483.1| formate hydrogenlyase, subunit G [Escherichia coli HS]
 gi|170019035|ref|YP_001723989.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Escherichia coli
           ATCC 8739]
 gi|170082295|ref|YP_001731615.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit
           [Escherichia coli str. K-12 substr. DH10B]
 gi|188491683|ref|ZP_02998953.1| NADH ubiquinone oxidoreductase [Escherichia coli 53638]
 gi|238901856|ref|YP_002927652.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit
           [Escherichia coli BW2952]
 gi|254037758|ref|ZP_04871816.1| hydrogenase 3 and formate hydrogenase complex [Escherichia sp.
           1_1_43]
 gi|256024774|ref|ZP_05438639.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit
           [Escherichia sp. 4_1_40B]
 gi|300947003|ref|ZP_07161229.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 116-1]
 gi|300954959|ref|ZP_07167371.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 175-1]
 gi|301027398|ref|ZP_07190737.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 196-1]
 gi|301645301|ref|ZP_07245251.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 146-1]
 gi|307139406|ref|ZP_07498762.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit
           [Escherichia coli H736]
 gi|331643403|ref|ZP_08344534.1| formate hydrogenlyase subunit 7 (FHL subunit 7)
           (Hydrogenase-3component G) [Escherichia coli H736]
 gi|2506958|sp|P16433|HYCG_ECOLI RecName: Full=Formate hydrogenlyase subunit 7; Short=FHL subunit 7;
           AltName: Full=Hydrogenase-3 component G
 gi|882612|gb|AAA69229.1| formate hydrogenlyase subunit 7 [Escherichia coli str. K-12 substr.
           MG1655]
 gi|1789074|gb|AAC75761.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit
           [Escherichia coli str. K-12 substr. MG1655]
 gi|85675540|dbj|BAE76796.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit
           [Escherichia coli str. K12 substr. W3110]
 gi|157067845|gb|ABV07100.1| formate hydrogenlyase, subunit G [Escherichia coli HS]
 gi|169753963|gb|ACA76662.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Escherichia coli
           ATCC 8739]
 gi|169890130|gb|ACB03837.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit
           [Escherichia coli str. K-12 substr. DH10B]
 gi|188486882|gb|EDU61985.1| NADH ubiquinone oxidoreductase [Escherichia coli 53638]
 gi|226839382|gb|EEH71403.1| hydrogenase 3 and formate hydrogenase complex [Escherichia sp.
           1_1_43]
 gi|238861454|gb|ACR63452.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit
           [Escherichia coli BW2952]
 gi|260448231|gb|ACX38653.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Escherichia coli
           DH1]
 gi|299879312|gb|EFI87523.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 196-1]
 gi|300318094|gb|EFJ67878.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 175-1]
 gi|300453390|gb|EFK17010.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 116-1]
 gi|301076419|gb|EFK91225.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 146-1]
 gi|309703078|emb|CBJ02410.1| formate hydrogenlyase subunit 7 [Escherichia coli ETEC H10407]
 gi|315137326|dbj|BAJ44485.1| hydrogenase 3 and formate hydrogenase complex [Escherichia coli
           DH1]
 gi|323172993|gb|EFZ58624.1| formate hydrogenlyase subunit 7 [Escherichia coli LT-68]
 gi|323935725|gb|EGB32039.1| NADH ubiquinone oxidoreductase [Escherichia coli E1520]
 gi|331036874|gb|EGI09098.1| formate hydrogenlyase subunit 7 (FHL subunit 7)
           (Hydrogenase-3component G) [Escherichia coli H736]
 gi|332344600|gb|AEE57934.1| formate hydrogenlyase subunit 7 [Escherichia coli UMNK88]
          Length = 255

 Score =  108 bits (270), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 52/125 (41%), Positives = 71/125 (56%), Gaps = 4/125 (3%)

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           G   C +E+     P +D ERFG     SPR +D+++  G +T  M S   R +   P+P
Sbjct: 47  GCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDP 106

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176
           +  IS G+C N GG +H  Y V  G D+IVPVD+Y+PGCPPT  A +YG      LL++K
Sbjct: 107 KICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQK 166

Query: 177 IRRVG 181
           I   G
Sbjct: 167 IHARG 171


>gi|312965023|ref|ZP_07779263.1| formate hydrogenlyase subunit 7 [Escherichia coli 2362-75]
 gi|331648437|ref|ZP_08349525.1| formate hydrogenlyase subunit 7 (FHL subunit 7)
           (Hydrogenase-3component G) [Escherichia coli M605]
 gi|281179722|dbj|BAI56052.1| formate hydrogenlyase subunit [Escherichia coli SE15]
 gi|312290579|gb|EFR18459.1| formate hydrogenlyase subunit 7 [Escherichia coli 2362-75]
 gi|331042184|gb|EGI14326.1| formate hydrogenlyase subunit 7 (FHL subunit 7)
           (Hydrogenase-3component G) [Escherichia coli M605]
          Length = 255

 Score =  108 bits (270), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 52/125 (41%), Positives = 71/125 (56%), Gaps = 4/125 (3%)

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           G   C +E+     P +D ERFG     SPR +D+++  G +T  M S   R +   P+P
Sbjct: 47  GCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDP 106

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176
           +  IS G+C N GG +H  Y V  G D+IVPVD+Y+PGCPPT  A +YG      LL++K
Sbjct: 107 KICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQK 166

Query: 177 IRRVG 181
           I   G
Sbjct: 167 IHARG 171


>gi|215488035|ref|YP_002330466.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit
           [Escherichia coli O127:H6 str. E2348/69]
 gi|215266107|emb|CAS10532.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit
           [Escherichia coli O127:H6 str. E2348/69]
          Length = 255

 Score =  108 bits (270), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 52/125 (41%), Positives = 71/125 (56%), Gaps = 4/125 (3%)

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           G   C +E+     P +D ERFG     SPR +D+++  G +T  M S   R +   P+P
Sbjct: 47  GCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDP 106

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176
           +  IS G+C N GG +H  Y V  G D+IVPVD+Y+PGCPPT  A +YG      LL++K
Sbjct: 107 KICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQK 166

Query: 177 IRRVG 181
           I   G
Sbjct: 167 IHARG 171


>gi|307312858|ref|ZP_07592488.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Escherichia coli W]
 gi|306907293|gb|EFN37799.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Escherichia coli W]
 gi|315061995|gb|ADT76322.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit
           [Escherichia coli W]
 gi|323377422|gb|ADX49690.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Escherichia coli
           KO11]
          Length = 255

 Score =  108 bits (270), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 52/125 (41%), Positives = 71/125 (56%), Gaps = 4/125 (3%)

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           G   C +E+     P +D ERFG     SPR +D+++  G +T  M S   R +   P+P
Sbjct: 47  GCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDP 106

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176
           +  IS G+C N GG +H  Y V  G D+IVPVD+Y+PGCPPT  A +YG      LL++K
Sbjct: 107 KICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQK 166

Query: 177 IRRVG 181
           I   G
Sbjct: 167 IHARG 171


>gi|15803236|ref|NP_289268.1| hydrogenase activity [Escherichia coli O157:H7 EDL933]
 gi|15832829|ref|NP_311602.1| formate hydrogenlyase subunit-7 component G [Escherichia coli
           O157:H7 str. Sakai]
 gi|168749956|ref|ZP_02774978.1| formate hydrogenlyase, subunit G [Escherichia coli O157:H7 str.
           EC4113]
 gi|168755464|ref|ZP_02780471.1| formate hydrogenlyase, subunit G [Escherichia coli O157:H7 str.
           EC4401]
 gi|168762882|ref|ZP_02787889.1| formate hydrogenlyase, subunit G [Escherichia coli O157:H7 str.
           EC4501]
 gi|168768810|ref|ZP_02793817.1| formate hydrogenlyase, subunit G [Escherichia coli O157:H7 str.
           EC4486]
 gi|168774749|ref|ZP_02799756.1| formate hydrogenlyase, subunit G [Escherichia coli O157:H7 str.
           EC4196]
 gi|168778701|ref|ZP_02803708.1| formate hydrogenlyase, subunit G [Escherichia coli O157:H7 str.
           EC4076]
 gi|168787974|ref|ZP_02812981.1| formate hydrogenlyase, subunit G [Escherichia coli O157:H7 str.
           EC869]
 gi|168800200|ref|ZP_02825207.1| formate hydrogenlyase, subunit G [Escherichia coli O157:H7 str.
           EC508]
 gi|194438988|ref|ZP_03071072.1| formate hydrogenlyase, subunit G [Escherichia coli 101-1]
 gi|195938469|ref|ZP_03083851.1| formate hydrogenlyase subunit-7 component G [Escherichia coli
           O157:H7 str. EC4024]
 gi|208806906|ref|ZP_03249243.1| formate hydrogenlyase, subunit G [Escherichia coli O157:H7 str.
           EC4206]
 gi|208812606|ref|ZP_03253935.1| formate hydrogenlyase, subunit G [Escherichia coli O157:H7 str.
           EC4045]
 gi|208818509|ref|ZP_03258829.1| formate hydrogenlyase, subunit G [Escherichia coli O157:H7 str.
           EC4042]
 gi|209396735|ref|YP_002272182.1| formate hydrogenlyase, subunit G [Escherichia coli O157:H7 str.
           EC4115]
 gi|217327730|ref|ZP_03443813.1| formate hydrogenlyase, subunit G [Escherichia coli O157:H7 str.
           TW14588]
 gi|253772426|ref|YP_003035257.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254162650|ref|YP_003045758.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit
           [Escherichia coli B str. REL606]
 gi|254794659|ref|YP_003079496.1| hydrogenase 3 and formate hydrogenase complex subunit HycG
           [Escherichia coli O157:H7 str. TW14359]
 gi|260856826|ref|YP_003230717.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit
           [Escherichia coli O26:H11 str. 11368]
 gi|260869394|ref|YP_003235796.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit
           [Escherichia coli O111:H- str. 11128]
 gi|261226013|ref|ZP_05940294.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit
           [Escherichia coli O157:H7 str. FRIK2000]
 gi|261256729|ref|ZP_05949262.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit
           [Escherichia coli O157:H7 str. FRIK966]
 gi|291284046|ref|YP_003500864.1| Formate hydrogenlyase, subunit G [Escherichia coli O55:H7 str.
           CB9615]
 gi|293415969|ref|ZP_06658609.1| formate hydrogenlyase subunit 7 [Escherichia coli B185]
 gi|297519859|ref|ZP_06938245.1| Formate hydrogenlyase, subunit G [Escherichia coli OP50]
 gi|300919245|ref|ZP_07135768.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 115-1]
 gi|300930577|ref|ZP_07145969.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 187-1]
 gi|331654196|ref|ZP_08355196.1| formate hydrogenlyase subunit 7 (FHL subunit 7)
           (Hydrogenase-3component G) [Escherichia coli M718]
 gi|331674227|ref|ZP_08374987.1| formate hydrogenlyase subunit 7 (FHL subunit 7)
           (Hydrogenase-3component G) [Escherichia coli TA280]
 gi|12517167|gb|AAG57826.1|AE005500_5 hydrogenase activity [Escherichia coli O157:H7 str. EDL933]
 gi|13363046|dbj|BAB36998.1| formate hydrogenlyase subunit-7 component G [Escherichia coli
           O157:H7 str. Sakai]
 gi|187769518|gb|EDU33362.1| formate hydrogenlyase, subunit G [Escherichia coli O157:H7 str.
           EC4196]
 gi|188015810|gb|EDU53932.1| formate hydrogenlyase, subunit G [Escherichia coli O157:H7 str.
           EC4113]
 gi|189003614|gb|EDU72600.1| formate hydrogenlyase, subunit G [Escherichia coli O157:H7 str.
           EC4076]
 gi|189357334|gb|EDU75753.1| formate hydrogenlyase, subunit G [Escherichia coli O157:H7 str.
           EC4401]
 gi|189362033|gb|EDU80452.1| formate hydrogenlyase, subunit G [Escherichia coli O157:H7 str.
           EC4486]
 gi|189366866|gb|EDU85282.1| formate hydrogenlyase, subunit G [Escherichia coli O157:H7 str.
           EC4501]
 gi|189372104|gb|EDU90520.1| formate hydrogenlyase, subunit G [Escherichia coli O157:H7 str.
           EC869]
 gi|189377479|gb|EDU95895.1| formate hydrogenlyase, subunit G [Escherichia coli O157:H7 str.
           EC508]
 gi|194422109|gb|EDX38112.1| formate hydrogenlyase, subunit G [Escherichia coli 101-1]
 gi|208726707|gb|EDZ76308.1| formate hydrogenlyase, subunit G [Escherichia coli O157:H7 str.
           EC4206]
 gi|208733883|gb|EDZ82570.1| formate hydrogenlyase, subunit G [Escherichia coli O157:H7 str.
           EC4045]
 gi|208738632|gb|EDZ86314.1| formate hydrogenlyase, subunit G [Escherichia coli O157:H7 str.
           EC4042]
 gi|209158135|gb|ACI35568.1| formate hydrogenlyase, subunit G [Escherichia coli O157:H7 str.
           EC4115]
 gi|209761908|gb|ACI79266.1| formate hydrogenlyase subunit-7 component G [Escherichia coli]
 gi|209761910|gb|ACI79267.1| formate hydrogenlyase subunit-7 component G [Escherichia coli]
 gi|209761912|gb|ACI79268.1| formate hydrogenlyase subunit-7 component G [Escherichia coli]
 gi|209761914|gb|ACI79269.1| formate hydrogenlyase subunit-7 component G [Escherichia coli]
 gi|209761916|gb|ACI79270.1| formate hydrogenlyase subunit-7 component G [Escherichia coli]
 gi|217320097|gb|EEC28522.1| formate hydrogenlyase, subunit G [Escherichia coli O157:H7 str.
           TW14588]
 gi|242378276|emb|CAQ33051.1| hydrogenase 3 and formate hydrogenlyase complex, HycG subunit,
           subunit of hydrogenase 3 and formate hydrogenlyase
           complex [Escherichia coli BL21(DE3)]
 gi|253323470|gb|ACT28072.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253974551|gb|ACT40222.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit
           [Escherichia coli B str. REL606]
 gi|253978718|gb|ACT44388.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit
           [Escherichia coli BL21(DE3)]
 gi|254594059|gb|ACT73420.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit
           [Escherichia coli O157:H7 str. TW14359]
 gi|257755475|dbj|BAI26977.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit
           [Escherichia coli O26:H11 str. 11368]
 gi|257765750|dbj|BAI37245.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit
           [Escherichia coli O111:H- str. 11128]
 gi|290763919|gb|ADD57880.1| Formate hydrogenlyase, subunit G [Escherichia coli O55:H7 str.
           CB9615]
 gi|291432158|gb|EFF05140.1| formate hydrogenlyase subunit 7 [Escherichia coli B185]
 gi|300413690|gb|EFJ97000.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 115-1]
 gi|300461519|gb|EFK25012.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 187-1]
 gi|320189051|gb|EFW63710.1| Formate hydrogenlyase subunit 7 [Escherichia coli O157:H7 str.
           EC1212]
 gi|320640362|gb|EFX09901.1| Formate hydrogenlyase, subunit G [Escherichia coli O157:H7 str.
           G5101]
 gi|320645909|gb|EFX14890.1| Formate hydrogenlyase, subunit G [Escherichia coli O157:H- str.
           493-89]
 gi|320651209|gb|EFX19644.1| Formate hydrogenlyase, subunit G [Escherichia coli O157:H- str. H
           2687]
 gi|320656759|gb|EFX24647.1| Formate hydrogenlyase, subunit G [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
 gi|320662302|gb|EFX29699.1| Formate hydrogenlyase, subunit G [Escherichia coli O55:H7 str. USDA
           5905]
 gi|320667353|gb|EFX34311.1| Formate hydrogenlyase, subunit G [Escherichia coli O157:H7 str.
           LSU-61]
 gi|323154935|gb|EFZ41127.1| formate hydrogenlyase subunit 7 [Escherichia coli EPECa14]
 gi|323941450|gb|EGB37633.1| NADH ubiquinone oxidoreductase [Escherichia coli E482]
 gi|323960621|gb|EGB56247.1| NADH ubiquinone oxidoreductase [Escherichia coli H489]
 gi|323971552|gb|EGB66785.1| NADH ubiquinone oxidoreductase [Escherichia coli TA007]
 gi|326339209|gb|EGD63024.1| Formate hydrogenlyase subunit 7 [Escherichia coli O157:H7 str.
           1044]
 gi|326342908|gb|EGD66676.1| Formate hydrogenlyase subunit 7 [Escherichia coli O157:H7 str.
           1125]
 gi|331047578|gb|EGI19655.1| formate hydrogenlyase subunit 7 (FHL subunit 7)
           (Hydrogenase-3component G) [Escherichia coli M718]
 gi|331068321|gb|EGI39716.1| formate hydrogenlyase subunit 7 (FHL subunit 7)
           (Hydrogenase-3component G) [Escherichia coli TA280]
          Length = 255

 Score =  108 bits (270), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 52/125 (41%), Positives = 71/125 (56%), Gaps = 4/125 (3%)

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           G   C +E+     P +D ERFG     SPR +D+++  G +T  M S   R +   P+P
Sbjct: 47  GCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDP 106

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176
           +  IS G+C N GG +H  Y V  G D+IVPVD+Y+PGCPPT  A +YG      LL++K
Sbjct: 107 KICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQK 166

Query: 177 IRRVG 181
           I   G
Sbjct: 167 IHARG 171


>gi|213583852|ref|ZP_03365678.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
          Length = 174

 Score =  108 bits (270), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 50/118 (42%), Positives = 69/118 (58%), Gaps = 4/118 (3%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E+     P +D ERFG     SPR +D+++  G +T  M S   R +   P+P+  I
Sbjct: 51  CEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICI 110

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKKIR 178
           S G+C N GG +H  Y V  G D+IVPVD+Y+PGCPPT  A +YG      LL++KI 
Sbjct: 111 SYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIH 168


>gi|110806654|ref|YP_690174.1| hydrogenase activity [Shigella flexneri 5 str. 8401]
 gi|110616202|gb|ABF04869.1| hydrogenase activity [Shigella flexneri 5 str. 8401]
          Length = 255

 Score =  108 bits (270), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 52/125 (41%), Positives = 71/125 (56%), Gaps = 4/125 (3%)

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           G   C +E+     P +D ERFG     SPR +D+++  G +T  M S   R +   P+P
Sbjct: 47  GCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDP 106

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176
           +  IS G+C N GG +H  Y V  G D+IVPVD+Y+PGCPPT  A +YG      LL++K
Sbjct: 107 KICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQK 166

Query: 177 IRRVG 181
           I   G
Sbjct: 167 IHARG 171


>gi|146312833|ref|YP_001177907.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Enterobacter sp.
           638]
 gi|145319709|gb|ABP61856.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Enterobacter sp.
           638]
          Length = 255

 Score =  108 bits (270), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 51/122 (41%), Positives = 70/122 (57%), Gaps = 4/122 (3%)

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           G   C +E+     P +D ERFG     SPR +D+++  G +T  M S   R +   P+P
Sbjct: 47  GCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAMTRAMRSPALRAWQSAPDP 106

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176
           +  IS G+C N GG +H  Y V  G D+IVPVD+Y+PGCPPT  A +YG      LL++K
Sbjct: 107 KICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQK 166

Query: 177 IR 178
           I 
Sbjct: 167 IH 168


>gi|307265664|ref|ZP_07547217.1| NADH dehydrogenase (quinone) [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306919308|gb|EFN49529.1| NADH dehydrogenase (quinone) [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 155

 Score =  108 bits (270), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 49/124 (39%), Positives = 83/124 (66%), Gaps = 4/124 (3%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E++    P YD+ERFG     +P+ +D+++V GT+ +K    L+ +YDQMPEP+ V+
Sbjct: 28  CDIEILACMTPLYDMERFGMVNVGNPKHADILVVTGTVNHKNKEVLKNIYDQMPEPKVVV 87

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKKIRRV 180
           ++G CA  GG +  +Y+V+ G D+++PVD+YVPGCP   EA+I G+     +L++K  ++
Sbjct: 88  AVGVCAATGGIFREAYNVLGGIDKVIPVDVYVPGCPAKPEAIIDGLYKAAEILKEKYEKM 147

Query: 181 GNVK 184
           G  +
Sbjct: 148 GKAE 151


>gi|23015497|ref|ZP_00055271.1| COG3260: Ni,Fe-hydrogenase III small subunit [Magnetospirillum
           magnetotacticum MS-1]
          Length = 180

 Score =  108 bits (269), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 47/98 (47%), Positives = 66/98 (67%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E+   + P YDLERFG    ASPR +DV++V G +T  M  ALRR  +  PEPR+++
Sbjct: 63  CELEIHAVNHPIYDLERFGIRFVASPRHADVLLVTGPVTRNMEEALRRTVEATPEPRWIV 122

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162
           +MG C   GG +  SY+VV G   +VPVD+++PGCPP+
Sbjct: 123 AMGDCGKDGGCFAGSYAVVGGVSDVVPVDLHIPGCPPS 160


>gi|149280569|ref|ZP_01886685.1| NADH dehydrogenase I, chain B [Pedobacter sp. BAL39]
 gi|149228684|gb|EDM34087.1| NADH dehydrogenase I, chain B [Pedobacter sp. BAL39]
          Length = 128

 Score =  108 bits (269), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 51/104 (49%), Positives = 76/104 (73%), Gaps = 2/104 (1%)

Query: 76  RYDLERFGFAPRA-SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGG 134
            YD  RFG    + SPRQ+D+++V GT+  KM+  L++VY QM EPR+VI++G+CA+ GG
Sbjct: 4   HYDFGRFGSERLSFSPRQADLLMVMGTIAKKMSPVLKQVYLQMAEPRWVIAVGACASSGG 63

Query: 135 YYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
            +  +YSV++G D I+PVD+YVPGCPP  EA++ G   +Q+ +R
Sbjct: 64  IFD-TYSVLQGIDEIIPVDVYVPGCPPRPEAILDGFGKIQELVR 106


>gi|300820494|ref|ZP_07100645.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 119-7]
 gi|331669452|ref|ZP_08370298.1| formate hydrogenlyase subunit 7 (FHL subunit 7)
           (Hydrogenase-3component G) [Escherichia coli TA271]
 gi|331678693|ref|ZP_08379367.1| formate hydrogenlyase subunit 7 (FHL subunit 7)
           (Hydrogenase-3component G) [Escherichia coli H591]
 gi|300526758|gb|EFK47827.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 119-7]
 gi|331063120|gb|EGI35033.1| formate hydrogenlyase subunit 7 (FHL subunit 7)
           (Hydrogenase-3component G) [Escherichia coli TA271]
 gi|331073523|gb|EGI44844.1| formate hydrogenlyase subunit 7 (FHL subunit 7)
           (Hydrogenase-3component G) [Escherichia coli H591]
          Length = 255

 Score =  108 bits (269), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 51/125 (40%), Positives = 71/125 (56%), Gaps = 4/125 (3%)

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           G   C +E+     P +D ERFG     SPR +D+++  G +T  M S   R +   P+P
Sbjct: 47  GCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDP 106

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176
           +  IS G+C N GG +H  Y V  G D+I+PVD+Y+PGCPPT  A +YG      LL++K
Sbjct: 107 KICISYGACGNSGGIFHDLYCVWGGTDKIIPVDVYIPGCPPTPAATLYGFAMALGLLEQK 166

Query: 177 IRRVG 181
           I   G
Sbjct: 167 IHARG 171


>gi|118581190|ref|YP_902440.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Pelobacter
           propionicus DSM 2379]
 gi|118581198|ref|YP_902448.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Pelobacter
           propionicus DSM 2379]
 gi|118503900|gb|ABL00383.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Pelobacter
           propionicus DSM 2379]
 gi|118503908|gb|ABL00391.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Pelobacter
           propionicus DSM 2379]
          Length = 179

 Score =  108 bits (269), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 49/110 (44%), Positives = 69/110 (62%)

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           G   C +E++    P YD+ERFG     SPR +DVM+  G        AL+R Y  MP P
Sbjct: 23  GCNGCDIEVLNVLTPYYDVERFGIKLVGSPRHADVMLCQGPAMRSTGKALQRAYAAMPGP 82

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGI 170
           + V ++GSCA GGG +H SY+V    ++++PV+ YVPGCPP  EA+I+G+
Sbjct: 83  KLVFAIGSCACGGGIWHDSYAVHGPVEKLIPVNYYVPGCPPRPEAIIWGV 132


>gi|157148257|ref|YP_001455576.1| hypothetical protein CKO_04074 [Citrobacter koseri ATCC BAA-895]
 gi|157085462|gb|ABV15140.1| hypothetical protein CKO_04074 [Citrobacter koseri ATCC BAA-895]
          Length = 255

 Score =  108 bits (269), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 51/122 (41%), Positives = 70/122 (57%), Gaps = 4/122 (3%)

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           G   C +E+     P +D ERFG     SPR +D+++  G +T  M S   R +   P+P
Sbjct: 47  GCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDP 106

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176
           +  IS G+C N GG +H  Y V  G D+IVPVD+Y+PGCPPT  A +YG      LL++K
Sbjct: 107 KICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQK 166

Query: 177 IR 178
           I 
Sbjct: 167 IH 168


>gi|289522403|ref|ZP_06439257.1| carbon monoxide-induced hydrogenase, CooL subunit [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
 gi|289504239|gb|EFD25403.1| carbon monoxide-induced hydrogenase, CooL subunit [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
          Length = 160

 Score =  108 bits (269), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 48/106 (45%), Positives = 69/106 (65%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E++    PRYD+ERFG     +PR +D ++V G +T  M   LRRVY QMP P+ VI
Sbjct: 30  CDIEIVALLTPRYDIERFGMKLVGTPRHADALLVTGPVTKYMTDRLRRVYAQMPNPKVVI 89

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGI 170
            +G+C   G  ++ SY++    D+I+PVD+YV GCPP  EA+I G+
Sbjct: 90  VVGNCGASGDVFYKSYNLDGPVDQILPVDVYVHGCPPRPEAIIDGV 135


>gi|307299704|ref|ZP_07579498.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Thermotogales
           bacterium mesG1.Ag.4.2]
 gi|306914631|gb|EFN45023.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Thermotogales
           bacterium mesG1.Ag.4.2]
          Length = 179

 Score =  108 bits (269), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 53/139 (38%), Positives = 81/139 (58%), Gaps = 6/139 (4%)

Query: 44  DQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLT 103
           +++    R+ SL  + +   C A+E+      R+D+ER G  P A+PRQ+D+M++ G L+
Sbjct: 9   EKVANMLRSRSLWMLYYCTGCGAIELPPTMTSRFDMERLGIGPMATPRQADIMLITGYLS 68

Query: 104 NKMASALRRV---YDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCP 160
            K    LRRV   Y+QM  P+Y++  GSC   GG Y+ SY+ +   D  VPVD+Y+ GC 
Sbjct: 69  TK---TLRRVIYSYEQMQSPKYIVGFGSCTLNGGIYYDSYATINKLDLYVPVDLYLAGCM 125

Query: 161 PTAEALIYGILLLQKKIRR 179
           P  EA++ G   L  KI +
Sbjct: 126 PRPEAIVSGFTALMSKIDK 144


>gi|56414799|ref|YP_151874.1| formate hydrogenlyase subunit 7 [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197363727|ref|YP_002143364.1| formate hydrogenlyase subunit 7 [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|56129056|gb|AAV78562.1| formate hydrogenlyase subunit 7 [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197095204|emb|CAR60755.1| formate hydrogenlyase subunit 7 [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
          Length = 255

 Score =  108 bits (269), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 51/122 (41%), Positives = 70/122 (57%), Gaps = 4/122 (3%)

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           G   C +E+     P +D ERFG     SPR +D+++  G +T  M S   R +   P+P
Sbjct: 47  GCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDP 106

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176
           +  IS G+C N GG +H  Y V  G D+IVPVD+Y+PGCPPT  A +YG      LL++K
Sbjct: 107 KICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQK 166

Query: 177 IR 178
           I 
Sbjct: 167 IH 168


>gi|41686|emb|CAA35552.1| hycG [Escherichia coli]
 gi|1093500|prf||2104213G hycG gene
          Length = 255

 Score =  108 bits (269), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 52/125 (41%), Positives = 71/125 (56%), Gaps = 4/125 (3%)

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           G   C +E+     P +D ERFG     SPR +D+++  G +T  M S   R +   P+P
Sbjct: 47  GCNGCEIEIFGTLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDP 106

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176
           +  IS G+C N GG +H  Y V  G D+IVPVD+Y+PGCPPT  A +YG      LL++K
Sbjct: 107 KICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQK 166

Query: 177 IRRVG 181
           I   G
Sbjct: 167 IHARG 171


>gi|198244148|ref|YP_002216819.1| formate hydrogenlyase subunit G [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|197938664|gb|ACH75997.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|326624578|gb|EGE30923.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
          Length = 255

 Score =  108 bits (269), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 51/122 (41%), Positives = 70/122 (57%), Gaps = 4/122 (3%)

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           G   C +E+     P +D ERFG     SPR +D+++  G +T  M S   R +   P+P
Sbjct: 47  GCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDP 106

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176
           +  IS G+C N GG +H  Y V  G D+IVPVD+Y+PGCPPT  A +YG      LL++K
Sbjct: 107 KICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQK 166

Query: 177 IR 178
           I 
Sbjct: 167 IH 168


>gi|254171859|ref|ZP_04878535.1| NADH dehydrogenase beta subunit [Thermococcus sp. AM4]
 gi|214033755|gb|EEB74581.1| NADH dehydrogenase beta subunit [Thermococcus sp. AM4]
          Length = 194

 Score =  108 bits (269), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 52/135 (38%), Positives = 78/135 (57%)

Query: 43  VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL 102
            + L  WAR  SL  + F   C  +EM      RYDLERFG  P  +PR +D+ ++ G +
Sbjct: 18  FEPLFRWARKKSLWIVAFCTGCGGIEMPPLFTARYDLERFGMMPNPAPRMADLFLITGYV 77

Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162
           T K    +   Y+ M +P+YV++ GSC   GG Y  SY+VV+  D+ +P+D+ + GC P 
Sbjct: 78  TPKTLKRIIITYEMMQDPKYVLAHGSCPINGGVYWDSYNVVKQLDKYIPIDVAIAGCMPR 137

Query: 163 AEALIYGILLLQKKI 177
            EA++ GI  + +KI
Sbjct: 138 PEAVMDGIREIMRKI 152


>gi|283835553|ref|ZP_06355294.1| hydrogenase-4 component I [Citrobacter youngae ATCC 29220]
 gi|291068763|gb|EFE06872.1| hydrogenase-4 component I [Citrobacter youngae ATCC 29220]
          Length = 255

 Score =  108 bits (269), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 51/122 (41%), Positives = 70/122 (57%), Gaps = 4/122 (3%)

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           G   C +E+     P +D ERFG     SPR +D+++  G +T  M S   R +   P+P
Sbjct: 47  GCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDP 106

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176
           +  IS G+C N GG +H  Y V  G D+IVPVD+Y+PGCPPT  A +YG      LL++K
Sbjct: 107 KICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQK 166

Query: 177 IR 178
           I 
Sbjct: 167 IH 168


>gi|325288319|ref|YP_004264500.1| NADH dehydrogenase (quinone) [Syntrophobotulus glycolicus DSM 8271]
 gi|324963720|gb|ADY54499.1| NADH dehydrogenase (quinone) [Syntrophobotulus glycolicus DSM 8271]
          Length = 247

 Score =  108 bits (269), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 46/114 (40%), Positives = 75/114 (65%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C  EM   + P YD++R GF   ASPR +DV++V G +T  +  A+++ +   P P+ ++
Sbjct: 134 CDWEMTTLTGPVYDIQRLGFDFVASPRHADVLMVTGPVTRNLRIAVQKTFQATPAPKLIV 193

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           ++G+CA  GG    SY+   G DR++PVDIY+PGCPP  +ALI G++ +++K+ 
Sbjct: 194 AVGTCACSGGICGKSYASAGGVDRVLPVDIYIPGCPPRPQALIQGLMKIREKLE 247


>gi|295097300|emb|CBK86390.1| Ni,Fe-hydrogenase III small subunit [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 255

 Score =  108 bits (269), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 51/122 (41%), Positives = 70/122 (57%), Gaps = 4/122 (3%)

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           G   C +E+     P +D ERFG     SPR +D+++  G +T  M S   R +   P+P
Sbjct: 47  GCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDP 106

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176
           +  IS G+C N GG +H  Y V  G D+IVPVD+Y+PGCPPT  A +YG      LL++K
Sbjct: 107 KICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQK 166

Query: 177 IR 178
           I 
Sbjct: 167 IH 168


>gi|168230908|ref|ZP_02655966.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|194445653|ref|YP_002042089.1| formate hydrogenlyase subunit G [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194472446|ref|ZP_03078430.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|197265511|ref|ZP_03165585.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|194404316|gb|ACF64538.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194458810|gb|EDX47649.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|197243766|gb|EDY26386.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|205334465|gb|EDZ21229.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
          Length = 255

 Score =  108 bits (269), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 51/122 (41%), Positives = 70/122 (57%), Gaps = 4/122 (3%)

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           G   C +E+     P +D ERFG     SPR +D+++  G +T  M S   R +   P+P
Sbjct: 47  GCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDP 106

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176
           +  IS G+C N GG +H  Y V  G D+IVPVD+Y+PGCPPT  A +YG      LL++K
Sbjct: 107 KICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQK 166

Query: 177 IR 178
           I 
Sbjct: 167 IH 168


>gi|16761624|ref|NP_457241.1| formate hydrogenlyase subunit 7 [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|213052199|ref|ZP_03345077.1| formate hydrogenlyase subunit 7 [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
 gi|213426140|ref|ZP_03358890.1| formate hydrogenlyase subunit 7 [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|213648116|ref|ZP_03378169.1| formate hydrogenlyase subunit 7 [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
 gi|213855567|ref|ZP_03383807.1| formate hydrogenlyase subunit 7 [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
 gi|289823877|ref|ZP_06543483.1| formate hydrogenlyase subunit 7 [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-3139]
 gi|25298993|pir||AC0846 formate hydrogenlyase chain 7 [imported] - Salmonella enterica
           subsp. enterica serovar Typhi (strain CT18)
 gi|16503925|emb|CAD05954.1| formate hydrogenlyase subunit 7 [Salmonella enterica subsp.
           enterica serovar Typhi]
          Length = 255

 Score =  108 bits (269), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 51/122 (41%), Positives = 70/122 (57%), Gaps = 4/122 (3%)

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           G   C +E+     P +D ERFG     SPR +D+++  G +T  M S   R +   P+P
Sbjct: 47  GCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDP 106

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176
           +  IS G+C N GG +H  Y V  G D+IVPVD+Y+PGCPPT  A +YG      LL++K
Sbjct: 107 KICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQK 166

Query: 177 IR 178
           I 
Sbjct: 167 IH 168


>gi|237729674|ref|ZP_04560155.1| hydrogenase activity [Citrobacter sp. 30_2]
 gi|226908280|gb|EEH94198.1| hydrogenase activity [Citrobacter sp. 30_2]
          Length = 255

 Score =  107 bits (268), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 51/122 (41%), Positives = 70/122 (57%), Gaps = 4/122 (3%)

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           G   C +E+     P +D ERFG     SPR +D+++  G +T  M S   R +   P+P
Sbjct: 47  GCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDP 106

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176
           +  IS G+C N GG +H  Y V  G D+IVPVD+Y+PGCPPT  A +YG      LL++K
Sbjct: 107 KICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQK 166

Query: 177 IR 178
           I 
Sbjct: 167 IH 168


>gi|16766153|ref|NP_461768.1| hydrogenase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|62181350|ref|YP_217767.1| hydrogenase activity [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|161502108|ref|YP_001569220.1| hypothetical protein SARI_00125 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|161615750|ref|YP_001589715.1| hypothetical protein SPAB_03541 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|167550313|ref|ZP_02344070.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|167994151|ref|ZP_02575243.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168235879|ref|ZP_02660937.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|168242577|ref|ZP_02667509.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|168262039|ref|ZP_02684012.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|168464027|ref|ZP_02697944.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|168820465|ref|ZP_02832465.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|194448464|ref|YP_002046808.1| formate hydrogenlyase subunit G [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194734314|ref|YP_002115800.1| formate hydrogenlyase subunit G [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197248973|ref|YP_002147745.1| formate hydrogenlyase subunit G [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|200388880|ref|ZP_03215492.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|224584624|ref|YP_002638422.1| formate hydrogenlyase subunit 7 [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|238909614|ref|ZP_04653451.1| formate hydrogenlyase subunit 7 [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
 gi|16421393|gb|AAL21727.1| hydrogenase activity [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|62128983|gb|AAX66686.1| hydrogenase activity [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|160863455|gb|ABX20078.1| hypothetical protein SARI_00125 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
 gi|161365114|gb|ABX68882.1| hypothetical protein SPAB_03541 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194406768|gb|ACF66987.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194709816|gb|ACF89037.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|195633447|gb|EDX51861.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|197212676|gb|ACH50073.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197290829|gb|EDY30183.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|199605978|gb|EDZ04523.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|205324705|gb|EDZ12544.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205327917|gb|EDZ14681.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205337969|gb|EDZ24733.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|205342888|gb|EDZ29652.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|205348984|gb|EDZ35615.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|224469151|gb|ACN46981.1| formate hydrogenlyase subunit 7 [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|261247983|emb|CBG25816.1| formate hydrogenlyase subunit 7 [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
 gi|267994970|gb|ACY89855.1| hydrogenase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 14028S]
 gi|301159407|emb|CBW18925.1| formate hydrogenlyase subunit 7 [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
 gi|312913865|dbj|BAJ37839.1| formate hydrogenlyase subunit G [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|320087250|emb|CBY97015.1| NAD(P)H-quinone oxidoreductase subunit K, chloroplastic NAD(P)H
           dehydrogenase subunit K; NADH-plastoquinone
           oxidoreductase subunit K [Salmonella enterica subsp.
           enterica serovar Weltevreden str. 2007-60-3289-1]
 gi|321223400|gb|EFX48466.1| Formate hydrogenlyase subunit 7 [Salmonella enterica subsp.
           enterica serovar Typhimurium str. TN061786]
 gi|322614334|gb|EFY11265.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322621601|gb|EFY18454.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322624462|gb|EFY21295.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322628793|gb|EFY25576.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322633480|gb|EFY30222.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322635944|gb|EFY32652.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322639652|gb|EFY36337.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322646835|gb|EFY43338.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322650603|gb|EFY47008.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322654785|gb|EFY51104.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322659005|gb|EFY55258.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322664428|gb|EFY60622.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322668323|gb|EFY64480.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322673697|gb|EFY69798.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322677758|gb|EFY73821.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322681412|gb|EFY77444.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322683814|gb|EFY79824.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|322715833|gb|EFZ07404.1| hydrogenase [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. A50]
 gi|323131198|gb|ADX18628.1| hydrogenase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 4/74]
 gi|323193797|gb|EFZ79000.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323200267|gb|EFZ85349.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323203230|gb|EFZ88259.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323205523|gb|EFZ90488.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323216337|gb|EGA01064.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323221085|gb|EGA05516.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323226906|gb|EGA11088.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323230810|gb|EGA14928.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323234839|gb|EGA18925.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323238878|gb|EGA22928.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323241578|gb|EGA25609.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323248275|gb|EGA32211.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323251141|gb|EGA35014.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323256024|gb|EGA39762.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323263159|gb|EGA46697.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323264336|gb|EGA47842.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323271163|gb|EGA54591.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
 gi|332989719|gb|AEF08702.1| hydrogenase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. UK-1]
          Length = 255

 Score =  107 bits (268), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 51/122 (41%), Positives = 70/122 (57%), Gaps = 4/122 (3%)

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           G   C +E+     P +D ERFG     SPR +D+++  G +T  M S   R +   P+P
Sbjct: 47  GCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDP 106

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176
           +  IS G+C N GG +H  Y V  G D+IVPVD+Y+PGCPPT  A +YG      LL++K
Sbjct: 107 KICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQK 166

Query: 177 IR 178
           I 
Sbjct: 167 IH 168


>gi|288933891|ref|YP_003437950.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Klebsiella variicola
           At-22]
 gi|288888620|gb|ADC56938.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Klebsiella variicola
           At-22]
          Length = 255

 Score =  107 bits (268), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 51/121 (42%), Positives = 70/121 (57%), Gaps = 4/121 (3%)

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           G   C +E+     P +D ERFG     SPR +D+++  G +T  M S   R +   P+P
Sbjct: 47  GCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDP 106

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176
           +  IS G+C N GG +H  Y V  G D+IVPVD+Y+PGCPPT  A +YG      LL++K
Sbjct: 107 KICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQK 166

Query: 177 I 177
           I
Sbjct: 167 I 167


>gi|283786731|ref|YP_003366596.1| formate hydrogenlyase subunit 7 [Citrobacter rodentium ICC168]
 gi|282950185|emb|CBG89821.1| formate hydrogenlyase subunit 7 [Citrobacter rodentium ICC168]
          Length = 255

 Score =  107 bits (268), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 51/122 (41%), Positives = 70/122 (57%), Gaps = 4/122 (3%)

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           G   C +E+     P +D ERFG     SPR +D+++  G +T  M S   R +   P+P
Sbjct: 47  GCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDP 106

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176
           +  IS G+C N GG +H  Y V  G D+IVPVD+Y+PGCPPT  A +YG      LL++K
Sbjct: 107 KICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQK 166

Query: 177 IR 178
           I 
Sbjct: 167 IH 168


>gi|204928419|ref|ZP_03219619.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|204322741|gb|EDZ07938.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
          Length = 255

 Score =  107 bits (268), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 51/122 (41%), Positives = 70/122 (57%), Gaps = 4/122 (3%)

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           G   C +E+     P +D ERFG     SPR +D+++  G +T  M S   R +   P+P
Sbjct: 47  GCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDP 106

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176
           +  IS G+C N GG +H  Y V  G D+IVPVD+Y+PGCPPT  A +YG      LL++K
Sbjct: 107 KICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQK 166

Query: 177 IR 178
           I 
Sbjct: 167 IH 168


>gi|29143108|ref|NP_806450.1| formate hydrogenlyase subunit 7 [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|29138741|gb|AAO70310.1| formate hydrogenlyase subunit 7 [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
          Length = 255

 Score =  107 bits (268), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 51/122 (41%), Positives = 70/122 (57%), Gaps = 4/122 (3%)

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           G   C +E+     P +D ERFG     SPR +D+++  G +T  M S   R +   P+P
Sbjct: 47  GCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGVVTRAMRSPALRAWQSAPDP 106

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176
           +  IS G+C N GG +H  Y V  G D+IVPVD+Y+PGCPPT  A +YG      LL++K
Sbjct: 107 KICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQK 166

Query: 177 IR 178
           I 
Sbjct: 167 IH 168


>gi|261345089|ref|ZP_05972733.1| hydrogenase-4 component I [Providencia rustigianii DSM 4541]
 gi|282566773|gb|EFB72308.1| hydrogenase-4 component I [Providencia rustigianii DSM 4541]
          Length = 260

 Score =  107 bits (268), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 51/121 (42%), Positives = 71/121 (58%), Gaps = 4/121 (3%)

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           G   C +E+  A  P +D ERFG    ASPR +D+++  G +T  M     R Y+  P+P
Sbjct: 46  GCNGCEIEIFSAITPVFDAERFGIKVVASPRHADILLFTGAVTRAMRMPALRAYESAPDP 105

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176
           +  IS G+C  GGG +H  Y V  G + IVP+D+++PGCPPT  A IYG      LLQ+K
Sbjct: 106 KICISYGACGCGGGIFHDLYCVWGGSEHIVPIDVWIPGCPPTPAATIYGFAVALGLLQQK 165

Query: 177 I 177
           +
Sbjct: 166 L 166


>gi|207858110|ref|YP_002244761.1| formate hydrogenlyase subunit 7 [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|206709913|emb|CAR34267.1| formate hydrogenlyase subunit 7 [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
          Length = 255

 Score =  107 bits (268), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 51/122 (41%), Positives = 70/122 (57%), Gaps = 4/122 (3%)

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           G   C +E+     P +D ERFG     SPR +D+++  G +T  M S   R +   P+P
Sbjct: 47  GCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDP 106

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176
           +  IS G+C N GG +H  Y V  G D+IVPVD+Y+PGCPPT  A +YG      LL++K
Sbjct: 107 KICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQK 166

Query: 177 IR 178
           I 
Sbjct: 167 IH 168


>gi|152971578|ref|YP_001336687.1| hypothetical protein KPN_03056 [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|206580829|ref|YP_002236935.1| formate hydrogenlyase, subunit G [Klebsiella pneumoniae 342]
 gi|238896176|ref|YP_002920912.1| hydrogenase 3 small subunit [Klebsiella pneumoniae NTUH-K2044]
 gi|290511028|ref|ZP_06550397.1| formate hydrogenlyase subunit 7 hycG [Klebsiella sp. 1_1_55]
 gi|150956427|gb|ABR78457.1| hypothetical protein KPN_03056 [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|206569887|gb|ACI11663.1| formate hydrogenlyase, subunit G [Klebsiella pneumoniae 342]
 gi|238548494|dbj|BAH64845.1| hydrogenase 3 small subunit [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
 gi|289776021|gb|EFD84020.1| formate hydrogenlyase subunit 7 hycG [Klebsiella sp. 1_1_55]
          Length = 255

 Score =  107 bits (268), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 51/121 (42%), Positives = 70/121 (57%), Gaps = 4/121 (3%)

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           G   C +E+     P +D ERFG     SPR +D+++  G +T  M S   R +   P+P
Sbjct: 47  GCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDP 106

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176
           +  IS G+C N GG +H  Y V  G D+IVPVD+Y+PGCPPT  A +YG      LL++K
Sbjct: 107 KICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQK 166

Query: 177 I 177
           I
Sbjct: 167 I 167


>gi|324497290|gb|ADY39445.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [bacterium
           enrichment culture clone P24-9H]
          Length = 255

 Score =  107 bits (268), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 51/122 (41%), Positives = 70/122 (57%), Gaps = 4/122 (3%)

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           G   C +E+     P +D ERFG     SPR +D+++  G +T  M S   R +   P+P
Sbjct: 47  GCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDP 106

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176
           +  IS G+C N GG +H  Y V  G D+IVPVD+Y+PGCPPT  A +YG      LL++K
Sbjct: 107 KICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQK 166

Query: 177 IR 178
           I 
Sbjct: 167 IH 168


>gi|326202175|ref|ZP_08192045.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Clostridium
           papyrosolvens DSM 2782]
 gi|325987970|gb|EGD48796.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Clostridium
           papyrosolvens DSM 2782]
          Length = 266

 Score =  107 bits (268), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 48/107 (44%), Positives = 69/107 (64%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C  E+   + P  D+ERFG    ASPR +D+++V G ++  M  AL + Y+  P P+ V+
Sbjct: 154 CDYEIQALNGPYNDIERFGIHFVASPRHADMLLVTGCVSRNMEEALVKTYNATPSPKLVV 213

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171
           + G+CA  GG +  SY+   G D I+PVD+Y+PGCPP  +ALIYGIL
Sbjct: 214 AAGACACSGGLFKDSYAGRNGIDTILPVDVYIPGCPPRPQALIYGIL 260


>gi|323212811|gb|EFZ97622.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
          Length = 228

 Score =  107 bits (268), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 51/122 (41%), Positives = 70/122 (57%), Gaps = 4/122 (3%)

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           G   C +E+     P +D ERFG     SPR +D+++  G +T  M S   R +   P+P
Sbjct: 20  GCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDP 79

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176
           +  IS G+C N GG +H  Y V  G D+IVPVD+Y+PGCPPT  A +YG      LL++K
Sbjct: 80  KICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQK 139

Query: 177 IR 178
           I 
Sbjct: 140 IH 141


>gi|311278313|ref|YP_003940544.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Enterobacter cloacae
           SCF1]
 gi|308747508|gb|ADO47260.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Enterobacter cloacae
           SCF1]
          Length = 255

 Score =  107 bits (268), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 51/122 (41%), Positives = 70/122 (57%), Gaps = 4/122 (3%)

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           G   C +E+     P +D ERFG     SPR +D+++  G +T  M S   R +   P+P
Sbjct: 47  GCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDP 106

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176
           +  IS G+C N GG +H  Y V  G D+IVPVD+Y+PGCPPT  A +YG      LL++K
Sbjct: 107 KICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQK 166

Query: 177 IR 178
           I 
Sbjct: 167 IH 168


>gi|213417095|ref|ZP_03350239.1| formate hydrogenlyase subunit 7 [Salmonella enterica subsp.
           enterica serovar Typhi str. E01-6750]
          Length = 229

 Score =  107 bits (268), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 51/122 (41%), Positives = 70/122 (57%), Gaps = 4/122 (3%)

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           G   C +E+     P +D ERFG     SPR +D+++  G +T  M S   R +   P+P
Sbjct: 47  GCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDP 106

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176
           +  IS G+C N GG +H  Y V  G D+IVPVD+Y+PGCPPT  A +YG      LL++K
Sbjct: 107 KICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQK 166

Query: 177 IR 178
           I 
Sbjct: 167 IH 168


>gi|307353719|ref|YP_003894770.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanoplanus
           petrolearius DSM 11571]
 gi|307156952|gb|ADN36332.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanoplanus
           petrolearius DSM 11571]
          Length = 145

 Score =  107 bits (268), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 48/116 (41%), Positives = 74/116 (63%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E++   MPR+D ERFG     SPR +DV++V G + + M   L RVY+QM +P+ VI
Sbjct: 24  CDIEIVATLMPRHDPERFGIKLVGSPRHADVLLVTGPVVHAMKERLIRVYEQMADPKVVI 83

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
            +G+C   GG ++ SY++      ++PVD+YVPGC P  EA+I G++    K+ R+
Sbjct: 84  CVGACGQSGGVFYDSYNLDGPVGEVIPVDVYVPGCAPRPEAIINGVVKAIAKLERL 139


>gi|262043973|ref|ZP_06017057.1| hydrogenase-4 component I [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259038699|gb|EEW39886.1| hydrogenase-4 component I [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 255

 Score =  107 bits (268), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 51/122 (41%), Positives = 70/122 (57%), Gaps = 4/122 (3%)

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           G   C +E+     P +D ERFG     SPR +D+++  G +T  M S   R +   P+P
Sbjct: 47  GCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDP 106

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176
           +  IS G+C N GG +H  Y V  G D+IVPVD+Y+PGCPPT  A +YG      LL++K
Sbjct: 107 KICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQK 166

Query: 177 IR 178
           I 
Sbjct: 167 IH 168


>gi|333001926|gb|EGK21492.1| hydrogenase-4 component I [Shigella flexneri K-218]
          Length = 252

 Score =  107 bits (268), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 52/124 (41%), Positives = 73/124 (58%), Gaps = 4/124 (3%)

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           G   C +E+  A  P +D ERFG    +SPR +D+++  GT+T  M     R Y+  P+ 
Sbjct: 43  GCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGTVTRAMRMPALRAYESAPDH 102

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176
           +  +S G+C  GGG +H  YSV  G D IVP+D+++PGCPPT  A I+G      LLQ+K
Sbjct: 103 KICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHGFAVALGLLQQK 162

Query: 177 IRRV 180
           I  V
Sbjct: 163 IHAV 166


>gi|296104395|ref|YP_003614541.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Enterobacter
           cloacae subsp. cloacae ATCC 13047]
 gi|295058854|gb|ADF63592.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Enterobacter
           cloacae subsp. cloacae ATCC 13047]
          Length = 255

 Score =  107 bits (268), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 51/121 (42%), Positives = 70/121 (57%), Gaps = 4/121 (3%)

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           G   C +E+     P +D ERFG     SPR +D+++  G +T  M S   R +   P+P
Sbjct: 47  GCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSTPDP 106

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176
           +  IS G+C N GG +H  Y V  G D+IVPVD+Y+PGCPPT  A +YG      LL++K
Sbjct: 107 KICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQK 166

Query: 177 I 177
           I
Sbjct: 167 I 167


>gi|284006929|emb|CBA72200.1| hydrogenase-4 component I [Arsenophonus nasoniae]
          Length = 255

 Score =  107 bits (268), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 50/122 (40%), Positives = 70/122 (57%), Gaps = 4/122 (3%)

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           G   C +E+     P +D ERFG     SPR +D+++  G +T  M +   R +   P+P
Sbjct: 47  GCNGCEIEIFATLSPMFDAERFGIKVVPSPRHADILLFTGAVTRAMRTPALRAWHSAPDP 106

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176
           +  IS G+C N GG +H  Y V  G D+IVPVD+Y+PGCPPT  A +YG      LL++K
Sbjct: 107 KIAISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQK 166

Query: 177 IR 178
           I 
Sbjct: 167 IH 168


>gi|148791384|gb|ABR12484.1| hydrogenase 3 small subunit [Klebsiella oxytoca]
          Length = 255

 Score =  107 bits (268), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 51/121 (42%), Positives = 70/121 (57%), Gaps = 4/121 (3%)

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           G   C +E+     P +D ERFG     SPR +D+++  G +T  M S   R +   P+P
Sbjct: 47  GCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDP 106

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176
           +  IS G+C N GG +H  Y V  G D+IVPVD+Y+PGCPPT  A +YG      LL++K
Sbjct: 107 KICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQK 166

Query: 177 I 177
           I
Sbjct: 167 I 167


>gi|332755132|gb|EGJ85497.1| hydrogenase-4 component I [Shigella flexneri 4343-70]
          Length = 231

 Score =  107 bits (268), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 52/124 (41%), Positives = 73/124 (58%), Gaps = 4/124 (3%)

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           G   C +E+  A  P +D ERFG    +SPR +D+++  GT+T  M     R Y+  P+ 
Sbjct: 22  GCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGTVTRAMRMPALRAYESAPDH 81

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176
           +  +S G+C  GGG +H  YSV  G D IVP+D+++PGCPPT  A I+G      LLQ+K
Sbjct: 82  KICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHGFAVALGLLQQK 141

Query: 177 IRRV 180
           I  V
Sbjct: 142 IHAV 145


>gi|189218530|ref|YP_001939171.1| formate hydrogenlyase subunit 7 [Methylacidiphilum infernorum V4]
 gi|161075799|gb|ABX56647.1| putative formate hydrogenlyase [Methylacidiphilum infernorum V4]
 gi|189185388|gb|ACD82573.1| Formate hydrogenlyase subunit 7 [Methylacidiphilum infernorum V4]
          Length = 177

 Score =  107 bits (268), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 49/110 (44%), Positives = 73/110 (66%), Gaps = 1/110 (0%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E+   + P YD+ERFG    ASPR +D+++V G +T  M  AL+R YD MP P++V+
Sbjct: 65  CELEIHALNNPFYDIERFGIRFVASPRHADLLLVTGPVTKNMVEALKRTYDCMPHPKWVV 124

Query: 125 SMGSCANGGGYYHYSYSVVR-GCDRIVPVDIYVPGCPPTAEALIYGILLL 173
           + G CA G G +  SY+VV+ G + I+PVD+ + GCPPT   L+ G++ L
Sbjct: 125 AAGDCALGRGVFSQSYAVVKEGVEAIIPVDLRIDGCPPTPLDLLRGLVYL 174


>gi|261342161|ref|ZP_05970019.1| hydrogenase-4 component I [Enterobacter cancerogenus ATCC 35316]
 gi|288315494|gb|EFC54432.1| hydrogenase-4 component I [Enterobacter cancerogenus ATCC 35316]
          Length = 255

 Score =  107 bits (268), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 51/121 (42%), Positives = 70/121 (57%), Gaps = 4/121 (3%)

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           G   C +E+     P +D ERFG     SPR +D+++  G +T  M S   R +   P+P
Sbjct: 47  GCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDP 106

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176
           +  IS G+C N GG +H  Y V  G D+IVPVD+Y+PGCPPT  A +YG      LL++K
Sbjct: 107 KICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQK 166

Query: 177 I 177
           I
Sbjct: 167 I 167


>gi|205353791|ref|YP_002227592.1| formate hydrogenlyase subunit 7 [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|205273572|emb|CAR38559.1| formate hydrogenlyase subunit 7 [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|326628899|gb|EGE35242.1| formate hydrogenlyase subunit 7 [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9]
          Length = 255

 Score =  107 bits (268), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 51/122 (41%), Positives = 70/122 (57%), Gaps = 4/122 (3%)

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           G   C +E+     P +D ERFG     SPR +D+++  G +T  M S   R +   P+P
Sbjct: 47  GCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPELRAWQSAPDP 106

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176
           +  IS G+C N GG +H  Y V  G D+IVPVD+Y+PGCPPT  A +YG      LL++K
Sbjct: 107 KICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQK 166

Query: 177 IR 178
           I 
Sbjct: 167 IH 168


>gi|73748664|ref|YP_307903.1| hydrogenase, group 4, EchC subunit [Dehalococcoides sp. CBDB1]
 gi|147669423|ref|YP_001214241.1| ech hydrogenase subunit C [Dehalococcoides sp. BAV1]
 gi|289432690|ref|YP_003462563.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Dehalococcoides sp.
           GT]
 gi|73660380|emb|CAI82987.1| hydrogenase, group 4, EchC subunit [Dehalococcoides sp. CBDB1]
 gi|146270371|gb|ABQ17363.1| ech hydrogenase subunit C [Dehalococcoides sp. BAV1]
 gi|288946410|gb|ADC74107.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Dehalococcoides sp.
           GT]
          Length = 155

 Score =  107 bits (268), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 44/108 (40%), Positives = 70/108 (64%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E++    P YD+ERFG     +P+ SDV++V G    +    LR +Y+QMPEP+ VI
Sbjct: 25  CDIEILACLTPLYDVERFGIVNMGNPKHSDVLLVTGPANKRNYRVLRNLYEQMPEPKVVI 84

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILL 172
            +G+C   GG +H   +++ G D+++PVD+YVPGC    EA+I G+++
Sbjct: 85  VIGTCGCSGGVFHNCPNILGGVDKVIPVDVYVPGCAARPEAIIDGVVM 132


>gi|157370668|ref|YP_001478657.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Serratia
           proteamaculans 568]
 gi|157322432|gb|ABV41529.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Serratia
           proteamaculans 568]
          Length = 265

 Score =  107 bits (268), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 53/122 (43%), Positives = 70/122 (57%), Gaps = 4/122 (3%)

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           G   C +E+  A  P +D ERFG     SPR +D+++  G +T  M     R +   P+P
Sbjct: 48  GCNGCEIEIFAAVSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRIPAIRAWQASPDP 107

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176
           +  IS G+C N GG +H  Y V  G DRIVPVD+Y+PGCPPT  A IYG      LL +K
Sbjct: 108 KISISYGACGNSGGIFHDLYCVWGGTDRIVPVDVYIPGCPPTPAATIYGFAMALGLLDQK 167

Query: 177 IR 178
           I+
Sbjct: 168 IK 169


>gi|295099918|emb|CBK89007.1| ech hydrogenase subunit C [Eubacterium cylindroides T2-87]
          Length = 143

 Score =  107 bits (268), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 42/116 (36%), Positives = 78/116 (67%), Gaps = 4/116 (3%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E++  +MPR+D+ERFG     +P  +D++++ G +  + A  ++++Y QMP P+ V+
Sbjct: 21  CDIEVLACTMPRFDIERFGIINTGNPFHADILLITGGVNAQSAEVVKQIYSQMPHPKVVV 80

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176
           ++G CA  GG +   Y+++ G D+++PVD+YVPGC    +++I G+L    +L+KK
Sbjct: 81  AVGICACTGGVFKDCYNILGGVDKVIPVDVYVPGCAARPQSIIDGVLKAVDILEKK 136


>gi|220929108|ref|YP_002506017.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Clostridium
           cellulolyticum H10]
 gi|219999436|gb|ACL76037.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Clostridium
           cellulolyticum H10]
          Length = 266

 Score =  107 bits (267), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 48/107 (44%), Positives = 69/107 (64%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C  E+   + P  D+ERFG    ASPR +D+++V G ++  M  AL + Y+  P P+ V+
Sbjct: 154 CDYEVQALNGPYNDIERFGIHFVASPRHADMLLVTGCVSRNMEEALVKTYNATPSPKLVV 213

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171
           + G+CA  GG +  SY+   G D I+PVD+Y+PGCPP  +ALIYGIL
Sbjct: 214 AAGACACSGGLFKDSYAGRNGIDTILPVDVYIPGCPPRPQALIYGIL 260


>gi|82545206|ref|YP_409153.1| hydrogenase activity [Shigella boydii Sb227]
 gi|81246617|gb|ABB67325.1| hydrogenase activity [Shigella boydii Sb227]
 gi|332092087|gb|EGI97165.1| formate hydrogenlyase subunit 7 [Shigella boydii 3594-74]
          Length = 255

 Score =  107 bits (267), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 51/120 (42%), Positives = 69/120 (57%), Gaps = 5/120 (4%)

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           G   C +E+     P +D ERFG     SPR +D+++  G +T  M S   R +   P+P
Sbjct: 47  GCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDP 106

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGI-----LLLQK 175
           +  IS G+C N GG +H  Y V  G D+IVPVD+Y+PGCPPT  A +YG      LL+QK
Sbjct: 107 KICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLVQK 166


>gi|288932068|ref|YP_003436128.1| NADH-quinone oxidoreductase subunit beta [Ferroglobus placidus DSM
           10642]
 gi|288894316|gb|ADC65853.1| NADH-quinone oxidoreductase, B subunit [Ferroglobus placidus DSM
           10642]
          Length = 356

 Score =  107 bits (267), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 58/146 (39%), Positives = 81/146 (55%), Gaps = 5/146 (3%)

Query: 32  EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPR 91
           E  HKG L      L  W    S+       ACC VE+  A    YD ER G       R
Sbjct: 6   EFLHKGPLAP----LKKWGTKFSIWPTHLVTACCGVELAHAFASGYDGERLGVLNFGMAR 61

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
           Q++ ++V G +T KMA AL+  Y+QMP+P++VI MG+C   GG +   Y++V+  + +VP
Sbjct: 62  QTNCIVVEGAITRKMARALKITYEQMPDPKFVIVMGACGIKGGIFWNGYNMVKPFE-VVP 120

Query: 152 VDIYVPGCPPTAEALIYGILLLQKKI 177
           V  + PGCPPT E+L+     LQK+I
Sbjct: 121 VKYFAPGCPPTPESLLRCFRSLQKEI 146


>gi|197286367|ref|YP_002152239.1| hydrogenase-4 component I [Proteus mirabilis HI4320]
 gi|227357421|ref|ZP_03841775.1| hydrogenase-4 component I [Proteus mirabilis ATCC 29906]
 gi|194683854|emb|CAR44984.1| hydrogenase-4 component I [Proteus mirabilis HI4320]
 gi|227162379|gb|EEI47379.1| hydrogenase-4 component I [Proteus mirabilis ATCC 29906]
          Length = 260

 Score =  107 bits (267), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 50/122 (40%), Positives = 72/122 (59%), Gaps = 4/122 (3%)

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           G   C +E+  A  P +D ERFG    ASPR +D+++  G +T +M     R Y+  P+P
Sbjct: 46  GCNGCEIEIFSAITPVFDAERFGIKVVASPRHADILLFTGAVTRQMRVPALRAYESAPDP 105

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176
           +  IS G+C  GGG +H  Y V  G + IVP+D+++PGCPPT  A IYG      LL +K
Sbjct: 106 KICISYGACGCGGGIFHDLYCVWGGSETIVPIDVWIPGCPPTPAATIYGFAVALGLLDQK 165

Query: 177 IR 178
           ++
Sbjct: 166 LK 167


>gi|90426039|ref|YP_534409.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Rhodopseudomonas
           palustris BisB18]
 gi|90108053|gb|ABD90090.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Rhodopseudomonas
           palustris BisB18]
          Length = 246

 Score =  107 bits (267), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 50/118 (42%), Positives = 71/118 (60%), Gaps = 4/118 (3%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E+  A  P +D ERFG    ASPR +D+++  G +T  M     R Y+  P+P+ V+
Sbjct: 37  CEIEIFAAITPIFDAERFGIKVVASPRHADILLFTGAVTRAMRMPALRAYEAAPDPKIVV 96

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKKIR 178
           S G+C   GG +H  Y V  G D++VPVD+Y+PGCPPT  A IYG      LL +K++
Sbjct: 97  SYGACGCTGGIFHDLYCVWGGTDQVVPVDVYIPGCPPTPPATIYGFAVALGLLDQKLK 154


>gi|330829825|ref|YP_004392777.1| formate hydrogenlyase subunit 7 [Aeromonas veronii B565]
 gi|328804961|gb|AEB50160.1| Formate hydrogenlyase subunit 7 [Aeromonas veronii B565]
          Length = 271

 Score =  107 bits (267), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 50/122 (40%), Positives = 71/122 (58%), Gaps = 4/122 (3%)

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           G   C +E+     P +D ERFG    ASPR +D+++  G +T  M     R Y+  P+P
Sbjct: 51  GCNACEIEIFATITPLFDAERFGIKVVASPRHADILLFTGAVTRAMRVPALRAYEAAPDP 110

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176
           +  I+ G+C   GG +H  Y V  G D+IVPVD+Y+PGCPPT  A IYG      LL++K
Sbjct: 111 KICIAYGACGCDGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATIYGFAVALGLLEQK 170

Query: 177 IR 178
           ++
Sbjct: 171 LK 172


>gi|27381455|ref|NP_772984.1| hydrogenase-3 subunit G [Bradyrhizobium japonicum USDA 110]
 gi|27354623|dbj|BAC51609.1| hycG [Bradyrhizobium japonicum USDA 110]
          Length = 177

 Score =  107 bits (266), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 47/109 (43%), Positives = 71/109 (65%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E+   +   YD+ERFG    ASPR +DV++V G +T  M  AL R Y   P+P++V+
Sbjct: 58  CELEIHALNNAYYDVERFGLRFVASPRHADVLMVTGPVTKNMRDALERTYHATPDPKWVV 117

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLL 173
           ++G CA  GG +  SY+VV G  ++VPVD+++PGCPP    ++ G+L L
Sbjct: 118 AVGDCARDGGCFAGSYAVVGGVSQVVPVDLHIPGCPPPPTTILRGLLAL 166


>gi|297545022|ref|YP_003677324.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Thermoanaerobacter
           mathranii subsp. mathranii str. A3]
 gi|296842797|gb|ADH61313.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Thermoanaerobacter
           mathranii subsp. mathranii str. A3]
          Length = 155

 Score =  107 bits (266), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 48/106 (45%), Positives = 73/106 (68%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E++    P YD+ERFG     +P+ +D+++V GT+ +K    L+ +YDQMPEP+ V+
Sbjct: 28  CDIELLSCMTPLYDMERFGMVNVGNPKHADILVVTGTVNHKNKVVLKNIYDQMPEPKVVV 87

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGI 170
           ++G CA  GG +   Y+VV G D+I+PVD+YVPGCP   EA+I G+
Sbjct: 88  AVGVCAATGGIFRECYNVVGGVDKIIPVDVYVPGCPAKPEAIIDGL 133


>gi|238921134|ref|YP_002934649.1| hydrogenase-4 component I [Edwardsiella ictaluri 93-146]
 gi|238870703|gb|ACR70414.1| hydrogenase-4 component I [Edwardsiella ictaluri 93-146]
          Length = 274

 Score =  107 bits (266), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 51/118 (43%), Positives = 70/118 (59%), Gaps = 4/118 (3%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E+  A  P +D ERFG    ASPR +D+++  G +T  M     R Y   P+P+ VI
Sbjct: 61  CEIEIFAAISPLFDAERFGIKVVASPRHADILLFTGAVTRAMRIPAIRAYQSAPDPKIVI 120

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKKIR 178
           S G+C   GG +H  Y V  G D+IVPVD+Y+PGCPPT  A +YG      LL +K++
Sbjct: 121 SYGACGCSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAVALGLLDQKLK 178


>gi|269140240|ref|YP_003296941.1| hydrogenase activity [Edwardsiella tarda EIB202]
 gi|267985901|gb|ACY85730.1| hydrogenase activity [Edwardsiella tarda EIB202]
 gi|304560070|gb|ADM42734.1| Formate hydrogenlyase subunit 7 [Edwardsiella tarda FL6-60]
          Length = 273

 Score =  107 bits (266), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 51/118 (43%), Positives = 70/118 (59%), Gaps = 4/118 (3%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E+  A  P +D ERFG    ASPR +D+++  G +T  M     R Y   P+P+ VI
Sbjct: 60  CEIEIFAAISPLFDAERFGIKVVASPRHADILLFTGAVTRAMRIPAIRAYQSAPDPKIVI 119

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKKIR 178
           S G+C   GG +H  Y V  G D+IVPVD+Y+PGCPPT  A +YG      LL +K++
Sbjct: 120 SYGACGCSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAVALGLLDQKLK 177


>gi|299132789|ref|ZP_07025984.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Afipia sp. 1NLS2]
 gi|298592926|gb|EFI53126.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Afipia sp. 1NLS2]
          Length = 169

 Score =  107 bits (266), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 49/109 (44%), Positives = 70/109 (64%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E+   S P YDLERFG    ASPR +DV++V G +T  M   L R YD MP P++V+
Sbjct: 58  CELELNALSNPYYDLERFGLRFVASPRHADVLLVTGPVTKNMREPLLRTYDAMPAPKWVV 117

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLL 173
           ++G CA  GG Y  SY+  RG + ++PV++ + GCPP+   L+ G+L L
Sbjct: 118 AVGDCAACGGLYADSYACERGANAVLPVNLRIVGCPPSPTQLLEGLLAL 166


>gi|254458925|ref|ZP_05072348.1| hydrogenase-4 component I [Campylobacterales bacterium GD 1]
 gi|207084196|gb|EDZ61485.1| hydrogenase-4 component I [Campylobacterales bacterium GD 1]
          Length = 184

 Score =  107 bits (266), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 51/120 (42%), Positives = 76/120 (63%), Gaps = 4/120 (3%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E++ A  P+YDLERFG     +P+QSDV +V G +T +    L  +Y QMPEP+ V+
Sbjct: 25  CDIEILAALGPKYDLERFGVINTGNPKQSDVFLVTGPVTYRSRERLVELYIQMPEPKVVV 84

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKKIRRV 180
           + GSC   GG +   Y+V  G DR +PVD+YVPGC  + E LI G++    +L++K + +
Sbjct: 85  AFGSCTCTGGVFRDMYNVEDGIDRYIPVDVYVPGCAASPELLIDGLVKALDILKEKTKEM 144


>gi|300921421|ref|ZP_07137781.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 115-1]
 gi|300411655|gb|EFJ94965.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 115-1]
          Length = 176

 Score =  107 bits (266), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 51/124 (41%), Positives = 72/124 (58%), Gaps = 4/124 (3%)

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           G   C +E+  A  P +D ERFG    +SPR +D+++  G +T  M     R Y+  P+ 
Sbjct: 43  GCNACEIEIFAAITPVFDAERFGIKVISSPRHADILLFTGAVTRAMRMPALRAYESAPDH 102

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176
           +  +S G+C  GGG +H  YSV  G D IVP+D+++PGCPPT  A I+G      LLQ+K
Sbjct: 103 KICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHGFAVALGLLQQK 162

Query: 177 IRRV 180
           I  V
Sbjct: 163 IHAV 166


>gi|289578801|ref|YP_003477428.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Thermoanaerobacter
           italicus Ab9]
 gi|289528514|gb|ADD02866.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Thermoanaerobacter
           italicus Ab9]
          Length = 155

 Score =  107 bits (266), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 48/106 (45%), Positives = 73/106 (68%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E++    P YD+ERFG     +P+ +D+++V GT+ +K    L+ +YDQMPEP+ V+
Sbjct: 28  CDIELLSCMTPLYDMERFGMVNVGNPKHADILVVTGTVNHKNKVVLKNIYDQMPEPKVVV 87

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGI 170
           ++G CA  GG +   Y+VV G D+I+PVD+YVPGCP   EA+I G+
Sbjct: 88  AVGVCAATGGIFRECYNVVGGVDKIIPVDVYVPGCPAKPEAIIDGL 133


>gi|117617723|ref|YP_857018.1| hydrogenase-4 component I [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
 gi|117559130|gb|ABK36078.1| hydrogenase-4 component I [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
          Length = 271

 Score =  107 bits (266), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 50/122 (40%), Positives = 71/122 (58%), Gaps = 4/122 (3%)

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           G   C +E+     P +D ERFG    ASPR +D+++  G +T  M     R Y+  P+P
Sbjct: 51  GCNACEIEIFATITPLFDAERFGIKVVASPRHADILLFTGAVTRAMRVPALRAYEAAPDP 110

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176
           +  I+ G+C   GG +H  Y V  G D+IVPVD+Y+PGCPPT  A IYG      LL++K
Sbjct: 111 KICIAYGACGCDGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATIYGFAVALGLLEQK 170

Query: 177 IR 178
           ++
Sbjct: 171 LK 172


>gi|154250405|ref|YP_001411230.1| NADH dehydrogenase subunit B [Fervidobacterium nodosum Rt17-B1]
 gi|154154341|gb|ABS61573.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Fervidobacterium
           nodosum Rt17-B1]
          Length = 181

 Score =  107 bits (266), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 57/152 (37%), Positives = 86/152 (56%), Gaps = 10/152 (6%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP 90
           S+I  +       DQL    R+ S+  + +   C AVE+  +   R+D+ER G  P A+P
Sbjct: 2   SKIDERSVWEKIADQL----RSRSMWMLHYCTGCGAVELPPSMTSRFDMERLGMGPMATP 57

Query: 91  RQSDVMIVAGTLTNKMASALRRV---YDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCD 147
           RQ+D+ ++ G L+   A  LRRV   Y++M +P+YVI  GSC   GG Y+ SYS +   D
Sbjct: 58  RQADIFLITGYLS---AKTLRRVIYTYEKMADPKYVIGFGSCTINGGIYYDSYSTINRLD 114

Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
             +PVD+Y+ GC P  EA++     L + IR+
Sbjct: 115 YYIPVDLYIAGCMPRPEAILNAFNQLMEMIRK 146


>gi|124486434|ref|YP_001031050.1| ech hydrogenase subunit C [Methanocorpusculum labreanum Z]
 gi|124363975|gb|ABN07783.1| ech hydrogenase subunit C [Methanocorpusculum labreanum Z]
          Length = 144

 Score =  107 bits (266), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 45/107 (42%), Positives = 69/107 (64%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E++ A  P YD+ERFG     +P  +D+ +V G +  +    L+ +YDQ+PEP+ V+
Sbjct: 21  CDIEILAALTPVYDVERFGIINTGNPAHADIFVVTGGVNEQNKVVLKNLYDQIPEPKVVV 80

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171
           ++G CA+ GG +   Y++  G D I+PVD+YVPGC    EALI GI+
Sbjct: 81  AVGICASSGGVFRDCYNISGGVDTIIPVDVYVPGCSVRPEALIEGIV 127


>gi|332999462|gb|EGK19047.1| formate hydrogenlyase subunit 7 [Shigella flexneri VA-6]
          Length = 255

 Score =  107 bits (266), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 52/125 (41%), Positives = 70/125 (56%), Gaps = 4/125 (3%)

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           G   C +E+     P +D ERFG     SPR +D+++  G +T  M S   R +   P+P
Sbjct: 47  GCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDP 106

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176
           +  IS G+C N GG  H  Y V  G D+IVPVD+Y+PGCPPT  A +YG      LL++K
Sbjct: 107 KICISYGACGNSGGILHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQK 166

Query: 177 IRRVG 181
           I   G
Sbjct: 167 IHARG 171


>gi|209964717|ref|YP_002297632.1| hydrogenase-4 Fe-S subunit I [Rhodospirillum centenum SW]
 gi|209958183|gb|ACI98819.1| hydrogenase-4 Fe-S subunit I [Rhodospirillum centenum SW]
          Length = 196

 Score =  106 bits (265), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 46/110 (41%), Positives = 74/110 (67%)

Query: 64  CCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYV 123
            C +E+   + P YDLERFGF+  ASPR +DV++V G +T  M  AL + ++  P+P++V
Sbjct: 57  ACEMEIHALNNPVYDLERFGFSFVASPRHADVLLVTGPVTTNMREALLKTWEATPDPKWV 116

Query: 124 ISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLL 173
           +++G CA  GG +  SY+VV G +++VPVD+ +PGCPP    ++  ++ L
Sbjct: 117 VALGQCAIDGGPFADSYAVVGGVEKVVPVDLMIPGCPPRPVDILAALVAL 166


>gi|154149575|ref|YP_001403193.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Candidatus
           Methanoregula boonei 6A8]
 gi|153998127|gb|ABS54550.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Methanoregula
           boonei 6A8]
          Length = 163

 Score =  106 bits (265), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 43/107 (40%), Positives = 69/107 (64%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E++    P YD+ERFG     +P+ +D+ +V G++  +    +R +YDQMP+P+ V+
Sbjct: 21  CDIEILACLTPMYDVERFGIINTGNPKHADIFVVTGSVNEQNKYVIRNIYDQMPDPKVVV 80

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171
           ++G CA  GG +   Y+V  G D I+PVD+YVPGC    E++I GI+
Sbjct: 81  AIGICATSGGIFRECYNVAGGIDTIIPVDVYVPGCAARPESIIDGIV 127


>gi|212710435|ref|ZP_03318563.1| hypothetical protein PROVALCAL_01497 [Providencia alcalifaciens DSM
           30120]
 gi|212686855|gb|EEB46383.1| hypothetical protein PROVALCAL_01497 [Providencia alcalifaciens DSM
           30120]
          Length = 260

 Score =  106 bits (265), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 50/121 (41%), Positives = 71/121 (58%), Gaps = 4/121 (3%)

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           G   C +E+  A  P +D ERFG    ASPR +D+++  G +T  M     R Y+  P+P
Sbjct: 46  GCNGCEIEIFSAITPVFDAERFGIKVVASPRHADILLFTGAVTRAMRMPALRAYESAPDP 105

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176
           +  IS G+C  GGG +H  Y V  G + IVP+D+++PGCPPT  A IYG      LL++K
Sbjct: 106 KICISYGACGCGGGIFHDLYCVWGGSEHIVPIDVWIPGCPPTPAATIYGFAVALGLLKQK 165

Query: 177 I 177
           +
Sbjct: 166 L 166


>gi|145298794|ref|YP_001141635.1| hydrogenase-4 component I [Aeromonas salmonicida subsp. salmonicida
           A449]
 gi|142851566|gb|ABO89887.1| hydrogenase-4 component I [Aeromonas salmonicida subsp. salmonicida
           A449]
          Length = 271

 Score =  106 bits (265), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 50/121 (41%), Positives = 70/121 (57%), Gaps = 4/121 (3%)

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           G   C +E+     P +D ERFG    ASPR +D+++  G +T  M     R Y+  P+P
Sbjct: 51  GCNACEIEIFATITPLFDAERFGIKVVASPRHADILLFTGAVTRAMRVPALRAYEAAPDP 110

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176
           +  I+ G+C   GG +H  Y V  G D+IVPVD+Y+PGCPPT  A IYG      LL++K
Sbjct: 111 KICIAYGACGCDGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATIYGFAVALGLLEQK 170

Query: 177 I 177
           +
Sbjct: 171 L 171


>gi|289806308|ref|ZP_06536937.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
           enterica serovar Typhi str. AG3]
          Length = 160

 Score =  106 bits (264), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 46/108 (42%), Positives = 64/108 (59%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E+     P +D ERFG     SPR +D+++  G +T  M S   R +   P+P+  I
Sbjct: 51  CEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICI 110

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILL 172
           S G+C N GG +H  Y V  G D+IVPVD+Y+PGCPPT  A +YG  +
Sbjct: 111 SYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAM 158


>gi|73749343|ref|YP_308582.1| hydrogenase, group 4, HycG subunit [Dehalococcoides sp. CBDB1]
 gi|147669953|ref|YP_001214771.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Dehalococcoides sp.
           BAV1]
 gi|73661059|emb|CAI83666.1| hydrogenase, group 4, HycG subunit [Dehalococcoides sp. CBDB1]
 gi|146270901|gb|ABQ17893.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Dehalococcoides sp.
           BAV1]
          Length = 171

 Score =  106 bits (264), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 56/158 (35%), Positives = 91/158 (57%), Gaps = 9/158 (5%)

Query: 23  DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCA-VEMMQASMPRYDLER 81
           DA+F ++       GF + S    + + R+ ++  +  G    A +E+   S P YD+ER
Sbjct: 21  DAEFDKL-------GFALKSEINTI-FGRSLAIRALDSGSDNAAEIELNNLSNPYYDVER 72

Query: 82  FGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYS 141
           FG +  ASPR +D++IV G +T  MA A+R+ +D MP P+ VI++G  A  GG     Y 
Sbjct: 73  FGISFVASPRHADILIVTGAVTQNMAIAVRKTFDAMPSPKLVIALGDDACSGGIASGGYG 132

Query: 142 VVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           V+ G D+I+PV++ +PG PP    +I  +L L + +R+
Sbjct: 133 VLGGVDKILPVNLKIPGNPPEPAQIINSLLGLMQSLRK 170


>gi|126178312|ref|YP_001046277.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Methanoculleus
           marisnigri JR1]
 gi|125861106|gb|ABN56295.1| ech hydrogenase subunit C [Methanoculleus marisnigri JR1]
          Length = 160

 Score =  106 bits (264), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 43/116 (37%), Positives = 74/116 (63%), Gaps = 4/116 (3%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E++    P YD+ERFG     +P+ +D++++ G +  +    +  +Y+QMPEP+ VI
Sbjct: 21  CDIEVLACLTPLYDVERFGMINTGNPKHADILLITGGINTQNREVVENIYEQMPEPKVVI 80

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176
           ++G CA  GG +   Y++V G D+++PVD+YVPGC    E +I G++    +L+KK
Sbjct: 81  AVGVCAATGGIFRECYNIVGGIDKVIPVDVYVPGCAARPEQIIDGVVTALSILEKK 136


>gi|15803012|ref|NP_289042.1| hydrogenase 4 Fe-S subunit [Escherichia coli O157:H7 EDL933]
 gi|12516874|gb|AAG57599.1|AE005478_9 hydrogenase 4 Fe-S subunit [Escherichia coli O157:H7 str. EDL933]
          Length = 252

 Score =  106 bits (264), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 51/124 (41%), Positives = 72/124 (58%), Gaps = 4/124 (3%)

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           G   C +E+  A  P +D ERFG    +SPR +D+++  G +T  M     R Y+  P+ 
Sbjct: 43  GCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMRMPALRAYESAPDH 102

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176
           +  +S G+C  GGG +H  YSV  G D IVP+D+++PGCPPT  A I+G      LLQ+K
Sbjct: 103 KICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHGFAVALGLLQQK 162

Query: 177 IRRV 180
           I  V
Sbjct: 163 IHAV 166


>gi|327252139|gb|EGE63811.1| hydrogenase-4 component I [Escherichia coli STEC_7v]
          Length = 249

 Score =  106 bits (264), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 51/124 (41%), Positives = 72/124 (58%), Gaps = 4/124 (3%)

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           G   C +E+  A  P +D ERFG    +SPR +D+++  G +T  M     R Y+  P+ 
Sbjct: 40  GCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMRMPALRAYESAPDH 99

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176
           +  +S G+C  GGG +H  YSV  G D IVP+D+++PGCPPT  A I+G      LLQ+K
Sbjct: 100 KICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHGFAVALGLLQQK 159

Query: 177 IRRV 180
           I  V
Sbjct: 160 IHAV 163


>gi|94468067|gb|ABF20066.1| Ech hydrogenase small subunit [Klebsiella pneumoniae]
          Length = 255

 Score =  106 bits (264), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 51/121 (42%), Positives = 69/121 (57%), Gaps = 4/121 (3%)

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           G   C +E+     P +D ERFG     SPR +D+++  G +T  M S   R +   P+P
Sbjct: 47  GCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDP 106

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176
           +  IS G+C N GG  H  Y V  G D+IVPVD+Y+PGCPPT  A +YG      LL++K
Sbjct: 107 KICISYGACGNSGGILHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQK 166

Query: 177 I 177
           I
Sbjct: 167 I 167


>gi|260913690|ref|ZP_05920166.1| hydrogenase-4 component I [Pasteurella dagmatis ATCC 43325]
 gi|260632229|gb|EEX50404.1| hydrogenase-4 component I [Pasteurella dagmatis ATCC 43325]
          Length = 254

 Score =  106 bits (264), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 49/122 (40%), Positives = 71/122 (58%), Gaps = 4/122 (3%)

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           G   C +E+     P +D ERFG    ASPR +D+++  G +T  M +   R Y+  P+P
Sbjct: 42  GCNGCEIEIFSTITPVFDAERFGIKVVASPRHADILLFTGAVTRAMLAPALRAYEAAPDP 101

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176
           +  +S G+C   GG +H  Y V  G D+IVP+D+Y+PGCPPT  A IYG      LL +K
Sbjct: 102 KICVSYGACGCSGGIFHDLYCVWGGSDKIVPIDVYIPGCPPTPAATIYGFAMALGLLDQK 161

Query: 177 IR 178
           ++
Sbjct: 162 LK 163


>gi|148264693|ref|YP_001231399.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Geobacter
           uraniireducens Rf4]
 gi|146398193|gb|ABQ26826.1| ech hydrogenase subunit C [Geobacter uraniireducens Rf4]
          Length = 147

 Score =  106 bits (264), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 43/107 (40%), Positives = 70/107 (65%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E++ +  P YDLERFG     +P+ +D++ V G++  K    L+ +YDQMP P+ ++
Sbjct: 21  CDIELIASLTPLYDLERFGIMSTGNPKHADILAVTGSVNEKSRQVLQNLYDQMPNPKVIV 80

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171
           ++G CA  G  +   Y+V+ G D+++PVD+YVPGC    EA+I G+L
Sbjct: 81  AVGICATSGCVFQDCYNVLGGVDKVLPVDVYVPGCAARPEAIIDGVL 127


>gi|323170245|gb|EFZ55898.1| hydrogenase-4 component I [Escherichia coli LT-68]
          Length = 249

 Score =  106 bits (264), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 51/124 (41%), Positives = 72/124 (58%), Gaps = 4/124 (3%)

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           G   C +E+  A  P +D ERFG    +SPR +D+++  G +T  M     R Y+  P+ 
Sbjct: 40  GCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMRMPALRAYESAPDH 99

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176
           +  +S G+C  GGG +H  YSV  G D IVP+D+++PGCPPT  A I+G      LLQ+K
Sbjct: 100 KICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHGFAVALGLLQQK 159

Query: 177 IRRV 180
           I  V
Sbjct: 160 IHAV 163


>gi|15832605|ref|NP_311378.1| hydrogenase 4 Fe-S subunit [Escherichia coli O157:H7 str. Sakai]
 gi|168748455|ref|ZP_02773477.1| hydrogenase-4, I subunit [Escherichia coli O157:H7 str. EC4113]
 gi|168756258|ref|ZP_02781265.1| hydrogenase-4, I subunit [Escherichia coli O157:H7 str. EC4401]
 gi|168761095|ref|ZP_02786102.1| hydrogenase-4, I subunit [Escherichia coli O157:H7 str. EC4501]
 gi|168768578|ref|ZP_02793585.1| hydrogenase-4, I subunit [Escherichia coli O157:H7 str. EC4486]
 gi|168773600|ref|ZP_02798607.1| hydrogenase-4, I subunit [Escherichia coli O157:H7 str. EC4196]
 gi|168778452|ref|ZP_02803459.1| hydrogenase-4, I subunit [Escherichia coli O157:H7 str. EC4076]
 gi|168787832|ref|ZP_02812839.1| hydrogenase-4, I subunit [Escherichia coli O157:H7 str. EC869]
 gi|168798857|ref|ZP_02823864.1| hydrogenase-4, I subunit [Escherichia coli O157:H7 str. EC508]
 gi|195936632|ref|ZP_03082014.1| hydrogenase 4 Fe-S subunit [Escherichia coli O157:H7 str. EC4024]
 gi|208809412|ref|ZP_03251749.1| hydrogenase-4, I subunit [Escherichia coli O157:H7 str. EC4206]
 gi|208811962|ref|ZP_03253291.1| hydrogenase-4, I subunit [Escherichia coli O157:H7 str. EC4045]
 gi|208821226|ref|ZP_03261546.1| hydrogenase-4, I subunit [Escherichia coli O157:H7 str. EC4042]
 gi|209398464|ref|YP_002271958.1| hydrogenase-4, I subunit [Escherichia coli O157:H7 str. EC4115]
 gi|217327671|ref|ZP_03443754.1| hydrogenase-4, I subunit [Escherichia coli O157:H7 str. TW14588]
 gi|254794434|ref|YP_003079271.1| hydrogenase 4, Fe-S subunit [Escherichia coli O157:H7 str. TW14359]
 gi|261223078|ref|ZP_05937359.1| hydrogenase 4, Fe-S subunit [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261259370|ref|ZP_05951903.1| hydrogenase 4, Fe-S subunit [Escherichia coli O157:H7 str. FRIK966]
 gi|13362821|dbj|BAB36774.1| hydrogenase 4 Fe-S subunit [Escherichia coli O157:H7 str. Sakai]
 gi|187770648|gb|EDU34492.1| hydrogenase-4, I subunit [Escherichia coli O157:H7 str. EC4196]
 gi|188017086|gb|EDU55208.1| hydrogenase-4, I subunit [Escherichia coli O157:H7 str. EC4113]
 gi|189003438|gb|EDU72424.1| hydrogenase-4, I subunit [Escherichia coli O157:H7 str. EC4076]
 gi|189356622|gb|EDU75041.1| hydrogenase-4, I subunit [Escherichia coli O157:H7 str. EC4401]
 gi|189362304|gb|EDU80723.1| hydrogenase-4, I subunit [Escherichia coli O157:H7 str. EC4486]
 gi|189368448|gb|EDU86864.1| hydrogenase-4, I subunit [Escherichia coli O157:H7 str. EC4501]
 gi|189372275|gb|EDU90691.1| hydrogenase-4, I subunit [Escherichia coli O157:H7 str. EC869]
 gi|189378584|gb|EDU97000.1| hydrogenase-4, I subunit [Escherichia coli O157:H7 str. EC508]
 gi|208729213|gb|EDZ78814.1| hydrogenase-4, I subunit [Escherichia coli O157:H7 str. EC4206]
 gi|208733239|gb|EDZ81926.1| hydrogenase-4, I subunit [Escherichia coli O157:H7 str. EC4045]
 gi|208741349|gb|EDZ89031.1| hydrogenase-4, I subunit [Escherichia coli O157:H7 str. EC4042]
 gi|209159864|gb|ACI37297.1| hydrogenase-4, I subunit [Escherichia coli O157:H7 str. EC4115]
 gi|209763620|gb|ACI80122.1| hydrogenase 4 Fe-S subunit [Escherichia coli]
 gi|209763622|gb|ACI80123.1| hydrogenase 4 Fe-S subunit [Escherichia coli]
 gi|209763626|gb|ACI80125.1| hydrogenase 4 Fe-S subunit [Escherichia coli]
 gi|217320038|gb|EEC28463.1| hydrogenase-4, I subunit [Escherichia coli O157:H7 str. TW14588]
 gi|254593834|gb|ACT73195.1| hydrogenase 4, Fe-S subunit [Escherichia coli O157:H7 str. TW14359]
 gi|320188821|gb|EFW63480.1| Hydrogenase-4 component I [Escherichia coli O157:H7 str. EC1212]
 gi|320640993|gb|EFX10477.1| hydrogenase 4, Fe-S subunit [Escherichia coli O157:H7 str. G5101]
 gi|326340284|gb|EGD64088.1| Hydrogenase-4 component I [Escherichia coli O157:H7 str. 1125]
 gi|326344969|gb|EGD68713.1| Hydrogenase-4 component I [Escherichia coli O157:H7 str. 1044]
          Length = 252

 Score =  106 bits (264), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 51/124 (41%), Positives = 72/124 (58%), Gaps = 4/124 (3%)

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           G   C +E+  A  P +D ERFG    +SPR +D+++  G +T  M     R Y+  P+ 
Sbjct: 43  GCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMRMPALRAYESAPDH 102

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176
           +  +S G+C  GGG +H  YSV  G D IVP+D+++PGCPPT  A I+G      LLQ+K
Sbjct: 103 KICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHGFAVALGLLQQK 162

Query: 177 IRRV 180
           I  V
Sbjct: 163 IHAV 166


>gi|191169211|ref|ZP_03030966.1| hydrogenase-4, I subunit [Escherichia coli B7A]
 gi|190900756|gb|EDV60550.1| hydrogenase-4, I subunit [Escherichia coli B7A]
          Length = 252

 Score =  106 bits (264), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 51/124 (41%), Positives = 72/124 (58%), Gaps = 4/124 (3%)

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           G   C +E+  A  P +D ERFG    +SPR +D+++  G +T  M     R Y+  P+ 
Sbjct: 43  GCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMRMPALRAYESAPDH 102

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176
           +  +S G+C  GGG +H  YSV  G D IVP+D+++PGCPPT  A I+G      LLQ+K
Sbjct: 103 KICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHGFAVALGLLQQK 162

Query: 177 IRRV 180
           I  V
Sbjct: 163 IHAV 166


>gi|323977333|gb|EGB72419.1| NADH ubiquinone oxidoreductase [Escherichia coli TW10509]
          Length = 252

 Score =  106 bits (264), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 51/124 (41%), Positives = 72/124 (58%), Gaps = 4/124 (3%)

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           G   C +E+  A  P +D ERFG    +SPR +D+++  G +T  M     R Y+  P+ 
Sbjct: 43  GCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMRMPALRAYESAPDH 102

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176
           +  +S G+C  GGG +H  YSV  G D IVP+D+++PGCPPT  A I+G      LLQ+K
Sbjct: 103 KICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHGFAVALGLLQQK 162

Query: 177 IRRV 180
           I  V
Sbjct: 163 IHAV 166


>gi|323936381|gb|EGB32671.1| NADH ubiquinone oxidoreductase [Escherichia coli E1520]
          Length = 252

 Score =  106 bits (264), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 51/124 (41%), Positives = 72/124 (58%), Gaps = 4/124 (3%)

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           G   C +E+  A  P +D ERFG    +SPR +D+++  G +T  M     R Y+  P+ 
Sbjct: 43  GCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMRMPALRAYESAPDH 102

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176
           +  +S G+C  GGG +H  YSV  G D IVP+D+++PGCPPT  A I+G      LLQ+K
Sbjct: 103 KICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHGFAVALGLLQQK 162

Query: 177 IRRV 180
           I  V
Sbjct: 163 IHAV 166


>gi|289433303|ref|YP_003463176.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Dehalococcoides sp.
           GT]
 gi|288947023|gb|ADC74720.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Dehalococcoides sp.
           GT]
          Length = 181

 Score =  106 bits (264), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 56/158 (35%), Positives = 91/158 (57%), Gaps = 9/158 (5%)

Query: 23  DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCA-VEMMQASMPRYDLER 81
           DA+F ++       GF + S    + + R+ ++  +  G    A +E+   S P YD+ER
Sbjct: 31  DAEFDKL-------GFALKSEINTI-FGRSLAIRALDSGSDNSAEIELNNLSNPYYDVER 82

Query: 82  FGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYS 141
           FG +  ASPR +D++IV G +T  MA A+R+ +D MP P+ VI++G  A  GG     Y 
Sbjct: 83  FGISFVASPRHADILIVTGAVTQNMAIAVRKTFDAMPSPKLVIALGDDACSGGIASGGYG 142

Query: 142 VVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           V+ G D+I+PV++ +PG PP    +I  +L L + +R+
Sbjct: 143 VLGGVDKILPVNLKIPGNPPEPAQIINALLGLMQSLRK 180


>gi|323967933|gb|EGB63345.1| NADH ubiquinone oxidoreductase [Escherichia coli M863]
          Length = 252

 Score =  106 bits (264), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 51/124 (41%), Positives = 72/124 (58%), Gaps = 4/124 (3%)

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           G   C +E+  A  P +D ERFG    +SPR +D+++  G +T  M     R Y+  P+ 
Sbjct: 43  GCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMRMPALRAYESAPDH 102

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176
           +  +S G+C  GGG +H  YSV  G D IVP+D+++PGCPPT  A I+G      LLQ+K
Sbjct: 103 KICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHGFAVALGLLQQK 162

Query: 177 IRRV 180
           I  V
Sbjct: 163 IHAV 166


>gi|301024711|ref|ZP_07188354.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 69-1]
 gi|331664046|ref|ZP_08364956.1| hydrogenase-4 component I [Escherichia coli TA143]
 gi|331673944|ref|ZP_08374707.1| hydrogenase-4 component I [Escherichia coli TA280]
 gi|300396442|gb|EFJ79980.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 69-1]
 gi|331059845|gb|EGI31822.1| hydrogenase-4 component I [Escherichia coli TA143]
 gi|331069217|gb|EGI40609.1| hydrogenase-4 component I [Escherichia coli TA280]
          Length = 252

 Score =  106 bits (264), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 51/124 (41%), Positives = 72/124 (58%), Gaps = 4/124 (3%)

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           G   C +E+  A  P +D ERFG    +SPR +D+++  G +T  M     R Y+  P+ 
Sbjct: 43  GCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMRMPALRAYESAPDH 102

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176
           +  +S G+C  GGG +H  YSV  G D IVP+D+++PGCPPT  A I+G      LLQ+K
Sbjct: 103 KICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHGFAVALGLLQQK 162

Query: 177 IRRV 180
           I  V
Sbjct: 163 IHAV 166


>gi|309702767|emb|CBJ02098.1| hydrogenase-4 component I [Escherichia coli ETEC H10407]
          Length = 251

 Score =  106 bits (264), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 51/124 (41%), Positives = 72/124 (58%), Gaps = 4/124 (3%)

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           G   C +E+  A  P +D ERFG    +SPR +D+++  G +T  M     R Y+  P+ 
Sbjct: 42  GCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMRMPALRAYESAPDH 101

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176
           +  +S G+C  GGG +H  YSV  G D IVP+D+++PGCPPT  A I+G      LLQ+K
Sbjct: 102 KICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHGFAVALGLLQQK 161

Query: 177 IRRV 180
           I  V
Sbjct: 162 IHAV 165


>gi|293415752|ref|ZP_06658395.1| hydrogenase-4 component I [Escherichia coli B185]
 gi|291433400|gb|EFF06379.1| hydrogenase-4 component I [Escherichia coli B185]
          Length = 252

 Score =  106 bits (264), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 51/124 (41%), Positives = 72/124 (58%), Gaps = 4/124 (3%)

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           G   C +E+  A  P +D ERFG    +SPR +D+++  G +T  M     R Y+  P+ 
Sbjct: 43  GCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMRMPALRAYESAPDH 102

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176
           +  +S G+C  GGG +H  YSV  G D IVP+D+++PGCPPT  A I+G      LLQ+K
Sbjct: 103 KICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHGFAVALGLLQQK 162

Query: 177 IRRV 180
           I  V
Sbjct: 163 IHAV 166


>gi|209763618|gb|ACI80121.1| hydrogenase 4 Fe-S subunit [Escherichia coli]
 gi|320646275|gb|EFX15202.1| hydrogenase 4, Fe-S subunit [Escherichia coli O157:H- str. 493-89]
 gi|320651780|gb|EFX20160.1| hydrogenase 4, Fe-S subunit [Escherichia coli O157:H- str. H 2687]
 gi|320657166|gb|EFX24975.1| hydrogenase 4, Fe-S subunit [Escherichia coli O55:H7 str. 3256-97
           TW 07815]
 gi|320667576|gb|EFX34491.1| hydrogenase 4, Fe-S subunit [Escherichia coli O157:H7 str. LSU-61]
          Length = 252

 Score =  106 bits (264), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 51/124 (41%), Positives = 72/124 (58%), Gaps = 4/124 (3%)

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           G   C +E+  A  P +D ERFG    +SPR +D+++  G +T  M     R Y+  P+ 
Sbjct: 43  GCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMRMPALRAYESAPDH 102

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176
           +  +S G+C  GGG +H  YSV  G D IVP+D+++PGCPPT  A I+G      LLQ+K
Sbjct: 103 KICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHGFAVALGLLQQK 162

Query: 177 IRRV 180
           I  V
Sbjct: 163 IHAV 166


>gi|170682690|ref|YP_001744672.1| hydrogenase-4, I subunit [Escherichia coli SMS-3-5]
 gi|218700947|ref|YP_002408576.1| hydrogenase 4, Fe-S subunit [Escherichia coli IAI39]
 gi|170520408|gb|ACB18586.1| hydrogenase-4, I subunit [Escherichia coli SMS-3-5]
 gi|218370933|emb|CAR18752.1| hydrogenase 4, Fe-S subunit [Escherichia coli IAI39]
          Length = 252

 Score =  106 bits (264), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 51/124 (41%), Positives = 72/124 (58%), Gaps = 4/124 (3%)

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           G   C +E+  A  P +D ERFG    +SPR +D+++  G +T  M     R Y+  P+ 
Sbjct: 43  GCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMRMPALRAYESAPDH 102

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176
           +  +S G+C  GGG +H  YSV  G D IVP+D+++PGCPPT  A I+G      LLQ+K
Sbjct: 103 KICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHGFAVALGLLQQK 162

Query: 177 IRRV 180
           I  V
Sbjct: 163 IHAV 166


>gi|291283709|ref|YP_003500527.1| Hydrogenase-4, I subunit [Escherichia coli O55:H7 str. CB9615]
 gi|209763624|gb|ACI80124.1| hydrogenase 4 Fe-S subunit [Escherichia coli]
 gi|290763582|gb|ADD57543.1| Hydrogenase-4, I subunit [Escherichia coli O55:H7 str. CB9615]
 gi|320662772|gb|EFX30104.1| hydrogenase 4, Fe-S subunit [Escherichia coli O55:H7 str. USDA
           5905]
          Length = 252

 Score =  106 bits (264), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 51/124 (41%), Positives = 72/124 (58%), Gaps = 4/124 (3%)

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           G   C +E+  A  P +D ERFG    +SPR +D+++  G +T  M     R Y+  P+ 
Sbjct: 43  GCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMRMPALRAYESAPDH 102

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176
           +  +S G+C  GGG +H  YSV  G D IVP+D+++PGCPPT  A I+G      LLQ+K
Sbjct: 103 KICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHGFAVALGLLQQK 162

Query: 177 IRRV 180
           I  V
Sbjct: 163 IHAV 166


>gi|315615732|gb|EFU96364.1| hydrogenase-4 component I [Escherichia coli 3431]
          Length = 249

 Score =  106 bits (264), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 51/124 (41%), Positives = 72/124 (58%), Gaps = 4/124 (3%)

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           G   C +E+  A  P +D ERFG    +SPR +D+++  G +T  M     R Y+  P+ 
Sbjct: 40  GCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMRMPALRAYESAPDH 99

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176
           +  +S G+C  GGG +H  YSV  G D IVP+D+++PGCPPT  A I+G      LLQ+K
Sbjct: 100 KICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHGFAVALGLLQQK 159

Query: 177 IRRV 180
           I  V
Sbjct: 160 IHAV 163


>gi|293410884|ref|ZP_06654460.1| hydrogenase 4 [Escherichia coli B354]
 gi|284922436|emb|CBG35523.1| hydrogenase-4 component I [Escherichia coli 042]
 gi|291471352|gb|EFF13836.1| hydrogenase 4 [Escherichia coli B354]
          Length = 252

 Score =  106 bits (264), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 51/124 (41%), Positives = 72/124 (58%), Gaps = 4/124 (3%)

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           G   C +E+  A  P +D ERFG    +SPR +D+++  G +T  M     R Y+  P+ 
Sbjct: 43  GCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMRMPALRAYESAPDH 102

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176
           +  +S G+C  GGG +H  YSV  G D IVP+D+++PGCPPT  A I+G      LLQ+K
Sbjct: 103 KICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHGFAVALGLLQQK 162

Query: 177 IRRV 180
           I  V
Sbjct: 163 IHAV 166


>gi|312973273|ref|ZP_07787445.1| hydrogenase-4 component I [Escherichia coli 1827-70]
 gi|310331868|gb|EFP99103.1| hydrogenase-4 component I [Escherichia coli 1827-70]
          Length = 249

 Score =  106 bits (264), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 51/124 (41%), Positives = 72/124 (58%), Gaps = 4/124 (3%)

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           G   C +E+  A  P +D ERFG    +SPR +D+++  G +T  M     R Y+  P+ 
Sbjct: 40  GCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMRMPALRAYESAPDH 99

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176
           +  +S G+C  GGG +H  YSV  G D IVP+D+++PGCPPT  A I+G      LLQ+K
Sbjct: 100 KICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHGFAVALGLLQQK 159

Query: 177 IRRV 180
           I  V
Sbjct: 160 IHAV 163


>gi|218705988|ref|YP_002413507.1| hydrogenase 4, Fe-S subunit [Escherichia coli UMN026]
 gi|293405925|ref|ZP_06649917.1| hydrogenase-4 component I [Escherichia coli FVEC1412]
 gi|298381673|ref|ZP_06991272.1| hydrogenase-4 component I [Escherichia coli FVEC1302]
 gi|300897630|ref|ZP_07116035.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 198-1]
 gi|218433085|emb|CAR13980.1| hydrogenase 4, Fe-S subunit [Escherichia coli UMN026]
 gi|291428133|gb|EFF01160.1| hydrogenase-4 component I [Escherichia coli FVEC1412]
 gi|298279115|gb|EFI20629.1| hydrogenase-4 component I [Escherichia coli FVEC1302]
 gi|300358630|gb|EFJ74500.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 198-1]
          Length = 252

 Score =  106 bits (264), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 51/124 (41%), Positives = 72/124 (58%), Gaps = 4/124 (3%)

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           G   C +E+  A  P +D ERFG    +SPR +D+++  G +T  M     R Y+  P+ 
Sbjct: 43  GCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMRMPALRAYESAPDH 102

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176
           +  +S G+C  GGG +H  YSV  G D IVP+D+++PGCPPT  A I+G      LLQ+K
Sbjct: 103 KICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHGFAVALGLLQQK 162

Query: 177 IRRV 180
           I  V
Sbjct: 163 IHAV 166


>gi|187732837|ref|YP_001881279.1| hydrogenase-4, I subunit [Shigella boydii CDC 3083-94]
 gi|187429829|gb|ACD09103.1| hydrogenase-4, I subunit [Shigella boydii CDC 3083-94]
          Length = 252

 Score =  106 bits (264), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 51/124 (41%), Positives = 72/124 (58%), Gaps = 4/124 (3%)

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           G   C +E+  A  P +D ERFG    +SPR +D+++  G +T  M     R Y+  P+ 
Sbjct: 43  GCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMRMPALRAYESAPDH 102

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176
           +  +S G+C  GGG +H  YSV  G D IVP+D+++PGCPPT  A I+G      LLQ+K
Sbjct: 103 KICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHGFAVALGLLQQK 162

Query: 177 IRRV 180
           I  V
Sbjct: 163 IHAV 166


>gi|157158565|ref|YP_001463811.1| hydrogenase-4, I subunit [Escherichia coli E24377A]
 gi|300922195|ref|ZP_07138331.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 182-1]
 gi|301329011|ref|ZP_07222038.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 78-1]
 gi|157080595|gb|ABV20303.1| hydrogenase-4, I subunit [Escherichia coli E24377A]
 gi|300421434|gb|EFK04745.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 182-1]
 gi|300844645|gb|EFK72405.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 78-1]
          Length = 252

 Score =  106 bits (264), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 51/124 (41%), Positives = 72/124 (58%), Gaps = 4/124 (3%)

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           G   C +E+  A  P +D ERFG    +SPR +D+++  G +T  M     R Y+  P+ 
Sbjct: 43  GCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMRMPALRAYESAPDH 102

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176
           +  +S G+C  GGG +H  YSV  G D IVP+D+++PGCPPT  A I+G      LLQ+K
Sbjct: 103 KICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHGFAVALGLLQQK 162

Query: 177 IRRV 180
           I  V
Sbjct: 163 IHAV 166


>gi|309786198|ref|ZP_07680826.1| formate hydrogenlyase subunit 7 [Shigella dysenteriae 1617]
 gi|308925943|gb|EFP71422.1| formate hydrogenlyase subunit 7 [Shigella dysenteriae 1617]
          Length = 213

 Score =  106 bits (264), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 51/125 (40%), Positives = 70/125 (56%), Gaps = 4/125 (3%)

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           G   C +E+     P +D ERFG     SPR +D+++  G +T  M S   R +   P+P
Sbjct: 5   GCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDP 64

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176
           +  IS G+C N GG +H  Y V  G D+IVPVD+Y+P CPPT  A +YG      LL++K
Sbjct: 65  KICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPSCPPTPAATLYGFAMALGLLEQK 124

Query: 177 IRRVG 181
           I   G
Sbjct: 125 IHARG 129


>gi|16130414|ref|NP_416984.1| hydrogenase 4, Fe-S subunit [Escherichia coli str. K-12 substr.
           MG1655]
 gi|82544938|ref|YP_408885.1| hydrogenase 4 Fe-S subunit [Shigella boydii Sb227]
 gi|89109295|ref|AP_003075.1| hydrogenase 4, Fe-S subunit [Escherichia coli str. K-12 substr.
           W3110]
 gi|170082099|ref|YP_001731419.1| hydrogenase 4, Fe-S subunit [Escherichia coli str. K-12 substr.
           DH10B]
 gi|193068356|ref|ZP_03049319.1| hydrogenase-4, I subunit [Escherichia coli E110019]
 gi|238901654|ref|YP_002927450.1| hydrogenase 4, Fe-S subunit [Escherichia coli BW2952]
 gi|300958884|ref|ZP_07170990.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 175-1]
 gi|301023874|ref|ZP_07187605.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 196-1]
 gi|301644479|ref|ZP_07244476.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 146-1]
 gi|307139123|ref|ZP_07498479.1| hydrogenase 4, Fe-S subunit [Escherichia coli H736]
 gi|331643106|ref|ZP_08344241.1| hydrogenase-4 component I [Escherichia coli H736]
 gi|331653914|ref|ZP_08354915.1| hydrogenase-4 component I [Escherichia coli M718]
 gi|2499332|sp|P77668|HYFI_ECOLI RecName: Full=Hydrogenase-4 component I
 gi|1788834|gb|AAC75542.1| hydrogenase 4, Fe-S subunit [Escherichia coli str. K-12 substr.
           MG1655]
 gi|2668498|gb|AAB88571.1| HyfI [Escherichia coli]
 gi|81246349|gb|ABB67057.1| hydrogenase 4 Fe-S subunit [Shigella boydii Sb227]
 gi|85675423|dbj|BAA16377.2| hydrogenase 4, Fe-S subunit [Escherichia coli str. K12 substr.
           W3110]
 gi|169889934|gb|ACB03641.1| hydrogenase 4, Fe-S subunit [Escherichia coli str. K-12 substr.
           DH10B]
 gi|192958308|gb|EDV88748.1| hydrogenase-4, I subunit [Escherichia coli E110019]
 gi|238861461|gb|ACR63459.1| hydrogenase 4, Fe-S subunit [Escherichia coli BW2952]
 gi|260448432|gb|ACX38854.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Escherichia coli
           DH1]
 gi|299880628|gb|EFI88839.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 196-1]
 gi|300314486|gb|EFJ64270.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 175-1]
 gi|301077224|gb|EFK92030.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 146-1]
 gi|315137112|dbj|BAJ44271.1| hydrogenase 4, Fe-S subunit [Escherichia coli DH1]
 gi|320185186|gb|EFW59966.1| Hydrogenase-4 component I [Shigella flexneri CDC 796-83]
 gi|323941252|gb|EGB37437.1| NADH ubiquinone oxidoreductase [Escherichia coli E482]
 gi|331039904|gb|EGI12124.1| hydrogenase-4 component I [Escherichia coli H736]
 gi|331048763|gb|EGI20839.1| hydrogenase-4 component I [Escherichia coli M718]
 gi|332344309|gb|AEE57643.1| hydrogenase-4, subunit I [Escherichia coli UMNK88]
          Length = 252

 Score =  106 bits (264), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 51/124 (41%), Positives = 72/124 (58%), Gaps = 4/124 (3%)

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           G   C +E+  A  P +D ERFG    +SPR +D+++  G +T  M     R Y+  P+ 
Sbjct: 43  GCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMRMPALRAYESAPDH 102

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176
           +  +S G+C  GGG +H  YSV  G D IVP+D+++PGCPPT  A I+G      LLQ+K
Sbjct: 103 KICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHGFAVALGLLQQK 162

Query: 177 IRRV 180
           I  V
Sbjct: 163 IHAV 166


>gi|323169072|gb|EFZ54749.1| hydrogenase-4 component I [Shigella sonnei 53G]
          Length = 249

 Score =  105 bits (263), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 51/124 (41%), Positives = 72/124 (58%), Gaps = 4/124 (3%)

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           G   C +E+  A  P +D ERFG    +SPR +D+++  G +T  M     R Y+  P+ 
Sbjct: 40  GCNACEIEIFAAITPVFDAERFGIKVISSPRHADILLFTGAVTRAMRMPALRAYESAPDH 99

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176
           +  +S G+C  GGG +H  YSV  G D IVP+D+++PGCPPT  A I+G      LLQ+K
Sbjct: 100 KICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHGFAVALGLLQQK 159

Query: 177 IRRV 180
           I  V
Sbjct: 160 IHAV 163


>gi|256021825|ref|ZP_05435690.1| hydrogenase 4, Fe-S subunit [Escherichia sp. 4_1_40B]
          Length = 252

 Score =  105 bits (263), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 51/124 (41%), Positives = 72/124 (58%), Gaps = 4/124 (3%)

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           G   C +E+  A  P +D ERFG    +SPR +D+++  G +T  M     R Y+  P+ 
Sbjct: 43  GCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMRMPALRAYESAPDH 102

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176
           +  +S G+C  GGG +H  YSV  G D IVP+D+++PGCPPT  A I+G      LLQ+K
Sbjct: 103 KICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHGFAVALGLLQQK 162

Query: 177 IRRV 180
           I  V
Sbjct: 163 IHAV 166


>gi|209919965|ref|YP_002294049.1| hydrogenase 4 Fe-S subunit [Escherichia coli SE11]
 gi|218555015|ref|YP_002387928.1| hydrogenase 4, Fe-S subunit [Escherichia coli IAI1]
 gi|218696116|ref|YP_002403783.1| hydrogenase 4, Fe-S subunit [Escherichia coli 55989]
 gi|309794467|ref|ZP_07688890.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 145-7]
 gi|209913224|dbj|BAG78298.1| hydrogenase 4 Fe-S subunit [Escherichia coli SE11]
 gi|218352848|emb|CAU98647.1| hydrogenase 4, Fe-S subunit [Escherichia coli 55989]
 gi|218361783|emb|CAQ99380.1| hydrogenase 4, Fe-S subunit [Escherichia coli IAI1]
 gi|308121923|gb|EFO59185.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 145-7]
 gi|320200049|gb|EFW74638.1| Hydrogenase-4 component I [Escherichia coli EC4100B]
 gi|324020088|gb|EGB89307.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 117-3]
 gi|324118167|gb|EGC12064.1| NADH ubiquinone oxidoreductase [Escherichia coli E1167]
          Length = 252

 Score =  105 bits (263), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 51/124 (41%), Positives = 72/124 (58%), Gaps = 4/124 (3%)

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           G   C +E+  A  P +D ERFG    +SPR +D+++  G +T  M     R Y+  P+ 
Sbjct: 43  GCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMRMPALRAYESAPDH 102

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176
           +  +S G+C  GGG +H  YSV  G D IVP+D+++PGCPPT  A I+G      LLQ+K
Sbjct: 103 KICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHGFAVALGLLQQK 162

Query: 177 IRRV 180
           I  V
Sbjct: 163 IHAV 166


>gi|74313015|ref|YP_311434.1| hydrogenase 4 Fe-S subunit [Shigella sonnei Ss046]
 gi|157161949|ref|YP_001459267.1| hydrogenase-4, I subunit [Escherichia coli HS]
 gi|170019227|ref|YP_001724181.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Escherichia coli
           ATCC 8739]
 gi|194437593|ref|ZP_03069689.1| hydrogenase-4, I subunit [Escherichia coli 101-1]
 gi|253772619|ref|YP_003035450.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254162463|ref|YP_003045571.1| hydrogenase 4, Fe-S subunit [Escherichia coli B str. REL606]
 gi|297519669|ref|ZP_06938055.1| hydrogenase 4, Fe-S subunit [Escherichia coli OP50]
 gi|300930126|ref|ZP_07145548.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 187-1]
 gi|73856492|gb|AAZ89199.1| hydrogenase 4 Fe-S subunit [Shigella sonnei Ss046]
 gi|157067629|gb|ABV06884.1| hydrogenase-4, I subunit [Escherichia coli HS]
 gi|169754155|gb|ACA76854.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Escherichia coli
           ATCC 8739]
 gi|194423399|gb|EDX39390.1| hydrogenase-4, I subunit [Escherichia coli 101-1]
 gi|242378087|emb|CAQ32860.1| hydrogenase 4, small subunit, subunit of hydrogenase 4 [Escherichia
           coli BL21(DE3)]
 gi|253323663|gb|ACT28265.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253974364|gb|ACT40035.1| hydrogenase 4, Fe-S subunit [Escherichia coli B str. REL606]
 gi|253978531|gb|ACT44201.1| hydrogenase 4, Fe-S subunit [Escherichia coli BL21(DE3)]
 gi|300461970|gb|EFK25463.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 187-1]
 gi|323961283|gb|EGB56895.1| NADH ubiquinone oxidoreductase [Escherichia coli H489]
 gi|323970989|gb|EGB66238.1| NADH ubiquinone oxidoreductase [Escherichia coli TA007]
          Length = 252

 Score =  105 bits (263), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 51/124 (41%), Positives = 72/124 (58%), Gaps = 4/124 (3%)

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           G   C +E+  A  P +D ERFG    +SPR +D+++  G +T  M     R Y+  P+ 
Sbjct: 43  GCNACEIEIFAAITPVFDAERFGIKVISSPRHADILLFTGAVTRAMRMPALRAYESAPDH 102

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176
           +  +S G+C  GGG +H  YSV  G D IVP+D+++PGCPPT  A I+G      LLQ+K
Sbjct: 103 KICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHGFAVALGLLQQK 162

Query: 177 IRRV 180
           I  V
Sbjct: 163 IHAV 166


>gi|194432188|ref|ZP_03064477.1| hydrogenase-4, I subunit [Shigella dysenteriae 1012]
 gi|194419717|gb|EDX35797.1| hydrogenase-4, I subunit [Shigella dysenteriae 1012]
 gi|320180473|gb|EFW55404.1| Hydrogenase-4 component I [Shigella boydii ATCC 9905]
 gi|332089845|gb|EGI94946.1| hydrogenase-4 component I [Shigella dysenteriae 155-74]
          Length = 252

 Score =  105 bits (263), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 51/124 (41%), Positives = 72/124 (58%), Gaps = 4/124 (3%)

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           G   C +E+  A  P +D ERFG    +SPR +D+++  G +T  M     R Y+  P+ 
Sbjct: 43  GCNACEIEIFAAITPVFDAERFGIKVISSPRHADILLFTGAVTRAMRMPALRAYESAPDH 102

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176
           +  +S G+C  GGG +H  YSV  G D IVP+D+++PGCPPT  A I+G      LLQ+K
Sbjct: 103 KICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHGFAVALGLLQQK 162

Query: 177 IRRV 180
           I  V
Sbjct: 163 IHAV 166


>gi|300817746|ref|ZP_07097961.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 107-1]
 gi|300529734|gb|EFK50796.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 107-1]
          Length = 252

 Score =  105 bits (263), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 51/124 (41%), Positives = 72/124 (58%), Gaps = 4/124 (3%)

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           G   C +E+  A  P +D ERFG    +SPR +D+++  G +T  M     R Y+  P+ 
Sbjct: 43  GCNACEIEIFAAITPVFDAERFGIKVISSPRHADILLFTGAVTRAMRMPALRAYESAPDH 102

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176
           +  +S G+C  GGG +H  YSV  G D IVP+D+++PGCPPT  A I+G      LLQ+K
Sbjct: 103 KICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHGFAVALGLLQQK 162

Query: 177 IRRV 180
           I  V
Sbjct: 163 IHAV 166


>gi|313650947|gb|EFS15347.1| hydrogenase-4 component I [Shigella flexneri 2a str. 2457T]
 gi|332766297|gb|EGJ96507.1| hydrogenase 3 and formate hydrogenlyase complex, HycG subunit
           [Shigella flexneri 2930-71]
          Length = 249

 Score =  105 bits (263), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 51/124 (41%), Positives = 72/124 (58%), Gaps = 4/124 (3%)

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           G   C +E+  A  P +D ERFG    +SPR +D+++  G +T  M     R Y+  P+ 
Sbjct: 40  GCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMRMPALRAYESAPDH 99

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176
           +  +S G+C  GGG +H  YSV  G D IVP+D+++PGCPPT  A I+G      LLQ+K
Sbjct: 100 KICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHGFAVALGLLQQK 159

Query: 177 IRRV 180
           I  V
Sbjct: 160 IHAV 163


>gi|288961303|ref|YP_003451642.1| NADH ubiquinone oxidoreductase [Azospirillum sp. B510]
 gi|288913611|dbj|BAI75098.1| NADH ubiquinone oxidoreductase [Azospirillum sp. B510]
          Length = 259

 Score =  105 bits (263), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 49/118 (41%), Positives = 71/118 (60%), Gaps = 4/118 (3%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E+  +  P +D ERFG    ASPR +D+++  G +T  M     R Y+  P+P+ V+
Sbjct: 38  CEIEIFSSITPVFDAERFGIKVVASPRHADILLFTGAVTRSMRMPALRAYEAAPDPKIVV 97

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKKIR 178
           S G+C   GG +H  Y V  G D IVPVD+Y+PGCPPT  A I+G      LL++K++
Sbjct: 98  SYGACGCTGGIFHDLYCVWGGTDNIVPVDVYIPGCPPTPAATIHGFAVALGLLEQKLK 155


>gi|50120178|ref|YP_049345.1| hydrogenase-4 component I [Pectobacterium atrosepticum SCRI1043]
 gi|49610704|emb|CAG74149.1| hydrogenase-4 component I [Pectobacterium atrosepticum SCRI1043]
          Length = 259

 Score =  105 bits (263), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 48/124 (38%), Positives = 74/124 (59%), Gaps = 4/124 (3%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E+  A  P +D ERFG    ASPR +D+++  G +T  M     R Y+  P+P+  I
Sbjct: 50  CEIEIFAAITPLFDAERFGIKVVASPRHADILLFTGAVTRAMRVPALRAYESAPDPKICI 109

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKKIRRV 180
           S G+C  GGG +H  Y V  G + IVP+D+++PGCPPT  A I+G      LL++K++  
Sbjct: 110 SYGACGCGGGIFHDLYCVWGGSESIVPIDVWIPGCPPTPAATIHGFAVALGLLEQKLKGQ 169

Query: 181 GNVK 184
            +++
Sbjct: 170 DHIQ 173


>gi|332092719|gb|EGI97788.1| hydrogenase-4 component I [Shigella boydii 3594-74]
          Length = 227

 Score =  105 bits (263), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 51/124 (41%), Positives = 72/124 (58%), Gaps = 4/124 (3%)

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           G   C +E+  A  P +D ERFG    +SPR +D+++  G +T  M     R Y+  P+ 
Sbjct: 18  GCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMRMPALRAYESAPDH 77

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176
           +  +S G+C  GGG +H  YSV  G D IVP+D+++PGCPPT  A I+G      LLQ+K
Sbjct: 78  KICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHGFAVALGLLQQK 137

Query: 177 IRRV 180
           I  V
Sbjct: 138 IHAV 141


>gi|14591239|ref|NP_143316.1| NADH dehydrogenase subunit B [Pyrococcus horikoshii OT3]
 gi|3257873|dbj|BAA30556.1| 195aa long hypothetical NADH-ubiquinone oxidoreductase subunit
           [Pyrococcus horikoshii OT3]
          Length = 195

 Score =  105 bits (263), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 52/135 (38%), Positives = 75/135 (55%)

Query: 44  DQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLT 103
           + L  WAR  SL  + F   C  +EM      RYD+ERFG     SPRQ D+ ++ G +T
Sbjct: 11  EPLFNWARKKSLWIVAFCTGCGGIEMPPLMTARYDIERFGMLSDPSPRQYDLFLITGYVT 70

Query: 104 NKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTA 163
            K    +   Y+  P+P+YV++ GSC   GG Y  SY+ V+  D+ +PVD+++ GC P  
Sbjct: 71  PKTLKRIIITYELSPDPKYVLAHGSCPINGGVYWDSYNTVKHLDKYIPVDVFIAGCMPRP 130

Query: 164 EALIYGILLLQKKIR 178
           EA++ GI  L   I 
Sbjct: 131 EAVMDGIYKLMDMIE 145


>gi|326389233|ref|ZP_08210801.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Thermoanaerobacter
           ethanolicus JW 200]
 gi|325994596|gb|EGD53020.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Thermoanaerobacter
           ethanolicus JW 200]
          Length = 155

 Score =  105 bits (263), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 47/124 (37%), Positives = 82/124 (66%), Gaps = 4/124 (3%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E++    P YD+ERFG     +P+ +D+++V GT+  +    L+ +YDQMP+P+ V+
Sbjct: 28  CDIEILACMTPLYDMERFGMVNVGNPKHADILVVTGTVNTRNKEVLKNIYDQMPDPKVVV 87

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKKIRRV 180
           ++G CA  GG +  +Y+V+ G D+++PVD+YVPGCP   EA+I G+     +L++K  ++
Sbjct: 88  AVGVCAATGGVFREAYNVIGGIDKVIPVDVYVPGCPAKPEAIIDGLYKAAEILKEKYEKM 147

Query: 181 GNVK 184
           G  +
Sbjct: 148 GKAE 151


>gi|24113818|ref|NP_708328.1| hydrogenase 4 Fe-S subunit [Shigella flexneri 2a str. 301]
 gi|30063865|ref|NP_838036.1| hydrogenase 4 Fe-S subunit [Shigella flexneri 2a str. 2457T]
 gi|110806420|ref|YP_689940.1| hydrogenase 4 Fe-S subunit [Shigella flexneri 5 str. 8401]
 gi|24052905|gb|AAN44035.1| hydrogenase 4 Fe-S subunit [Shigella flexneri 2a str. 301]
 gi|30042120|gb|AAP17846.1| hydrogenase 4 Fe-S subunit [Shigella flexneri 2a str. 2457T]
 gi|110615968|gb|ABF04635.1| hydrogenase 4 Fe-S subunit [Shigella flexneri 5 str. 8401]
 gi|281601892|gb|ADA74876.1| Hydrogenase 4 Fe-S subunit [Shigella flexneri 2002017]
 gi|332755532|gb|EGJ85896.1| hydrogenase-4 component I [Shigella flexneri K-671]
 gi|332756429|gb|EGJ86780.1| hydrogenase-4 component I [Shigella flexneri 2747-71]
 gi|333001624|gb|EGK21192.1| hydrogenase-4 component I [Shigella flexneri VA-6]
 gi|333002278|gb|EGK21842.1| hydrogenase-4 component I [Shigella flexneri K-272]
 gi|333016099|gb|EGK35431.1| hydrogenase-4 component I [Shigella flexneri K-227]
 gi|333016345|gb|EGK35676.1| hydrogenase-4 component I [Shigella flexneri K-304]
          Length = 252

 Score =  105 bits (263), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 51/124 (41%), Positives = 72/124 (58%), Gaps = 4/124 (3%)

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           G   C +E+  A  P +D ERFG    +SPR +D+++  G +T  M     R Y+  P+ 
Sbjct: 43  GCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMRMPALRAYESAPDH 102

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176
           +  +S G+C  GGG +H  YSV  G D IVP+D+++PGCPPT  A I+G      LLQ+K
Sbjct: 103 KICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHGFAVALGLLQQK 162

Query: 177 IRRV 180
           I  V
Sbjct: 163 IHAV 166


>gi|144900610|emb|CAM77474.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 176

 Score =  105 bits (262), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 54/113 (47%), Positives = 74/113 (65%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E+   + P YDLERFG    ASPR +DV++V G ++  MA ALRR  +  PEPR+V+
Sbjct: 62  CELEIHAVNHPVYDLERFGIKFVASPRHADVLLVTGPVSWNMAEALRRTVEATPEPRWVV 121

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
           +MG CA  GG +  SY+V  G   IVPVD+ +PGCPPT   +I G+L L + +
Sbjct: 122 AMGDCAIDGGCFAGSYAVAGGAAAIVPVDMTIPGCPPTPINIIAGLLALLEAV 174


>gi|325295363|ref|YP_004281877.1| NADH-quinone oxidoreductase, B subunit [Desulfurobacterium
           thermolithotrophum DSM 11699]
 gi|325065811|gb|ADY73818.1| NADH-quinone oxidoreductase, B subunit [Desulfurobacterium
           thermolithotrophum DSM 11699]
          Length = 156

 Score =  105 bits (262), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 60/138 (43%), Positives = 84/138 (60%)

Query: 45  QLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTN 104
           + + W+R  S   + F   CC++E++    PR+D ER+GF    SPRQ+D +IV G ++ 
Sbjct: 4   KFLDWSRANSPWGVHFCSGCCSLEVLALMGPRFDWERYGFMMTPSPRQADFIIVTGLVSK 63

Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164
           K+   L RVY QMPEPRYV  MG+CA GGG Y  S  V     + +P DI+V GCPP  E
Sbjct: 64  KVLPVLLRVYQQMPEPRYVFGMGACAGGGGPYWDSDFVAVDVSQYIPFDIFVTGCPPNPE 123

Query: 165 ALIYGILLLQKKIRRVGN 182
           A + G+L L++ I +  N
Sbjct: 124 ATLEGLLKLKEIILKNKN 141


>gi|153869972|ref|ZP_01999467.1| NADH-plastoquinone oxidoreductase subunit K [Beggiatoa sp. PS]
 gi|152073562|gb|EDN70533.1| NADH-plastoquinone oxidoreductase subunit K [Beggiatoa sp. PS]
          Length = 250

 Score =  105 bits (262), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 53/157 (33%), Positives = 85/157 (54%)

Query: 23  DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82
           + D S  + +   +  L   +D++    R+ SL  + +   C A+E+      R+D ER 
Sbjct: 14  NTDISCRTIDPQERSMLRKVIDRIADRCRSRSLFILHYCTGCGAIELPPTITSRFDAERL 73

Query: 83  GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142
           G  P  +PRQ+D++++ G L+ K    +   Y+QM  P+YVI MGSC   GG Y +SY+ 
Sbjct: 74  GIQPMVTPRQADILLITGYLSVKTLKRVILSYEQMQAPKYVIGMGSCTINGGMYWHSYAT 133

Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           V+     +PVD+Y+ GC P  EA++ G L L   I +
Sbjct: 134 VKRLQEYMPVDMYMAGCMPRPEAILEGFLQLIDNIDK 170


>gi|320176266|gb|EFW51327.1| Hydrogenase-4 component I [Shigella dysenteriae CDC 74-1112]
          Length = 224

 Score =  105 bits (262), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 51/124 (41%), Positives = 72/124 (58%), Gaps = 4/124 (3%)

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           G   C +E+  A  P +D ERFG    +SPR +D+++  G +T  M     R Y+  P+ 
Sbjct: 43  GCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMRMPALRAYESAPDH 102

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176
           +  +S G+C  GGG +H  YSV  G D IVP+D+++PGCPPT  A I+G      LLQ+K
Sbjct: 103 KICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHGFAVALGLLQQK 162

Query: 177 IRRV 180
           I  V
Sbjct: 163 IHAV 166


>gi|300940269|ref|ZP_07154866.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 21-1]
 gi|300454910|gb|EFK18403.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 21-1]
          Length = 252

 Score =  105 bits (262), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 51/124 (41%), Positives = 72/124 (58%), Gaps = 4/124 (3%)

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           G   C +E+  A  P +D ERFG    +SPR +D+++  G +T  M     R Y+  P+ 
Sbjct: 43  GCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMRMPALRAYESAPDH 102

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176
           +  +S G+C  GGG +H  YSV  G D IVP+D+++PGCPPT  A I+G      LLQ+K
Sbjct: 103 KICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPVATIHGFAVALGLLQQK 162

Query: 177 IRRV 180
           I  V
Sbjct: 163 IHAV 166


>gi|82777869|ref|YP_404218.1| hydrogenase 4 Fe-S subunit [Shigella dysenteriae Sd197]
 gi|81242017|gb|ABB62727.1| hydrogenase 4 Fe-S subunit [Shigella dysenteriae Sd197]
          Length = 252

 Score =  105 bits (262), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 51/124 (41%), Positives = 72/124 (58%), Gaps = 4/124 (3%)

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           G   C +E+  A  P +D ERFG    +SPR +D+++  G +T  M     R Y+  P+ 
Sbjct: 43  GCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMRMPALRAYESAPDH 102

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176
           +  +S G+C  GGG +H  YSV  G D IVP+D+++PGCPPT  A I+G      LLQ+K
Sbjct: 103 KICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWLPGCPPTPAATIHGFAVALGLLQQK 162

Query: 177 IRRV 180
           I  V
Sbjct: 163 IHAV 166


>gi|86748390|ref|YP_484886.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Rhodopseudomonas
           palustris HaA2]
 gi|86571418|gb|ABD05975.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Rhodopseudomonas
           palustris HaA2]
          Length = 177

 Score =  105 bits (262), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 46/113 (40%), Positives = 73/113 (64%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E+   +   YD+ERFG    ASPR +DV++V G +T+ M  ALR  YD +P P++V+
Sbjct: 58  CELEIHALNNAYYDVERFGLRFVASPRHADVLMVTGPVTHNMREALRLTYDAVPGPKWVV 117

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
           ++G CA  GG +  SY+V  G   ++PVD+++PGCPP+   ++ G+L L   +
Sbjct: 118 AVGDCAKDGGCFAGSYAVAGGVSAVIPVDLHIPGCPPSPMQILRGLLALLDSV 170


>gi|20806654|ref|NP_621825.1| NADH:ubiquinone oxidoreductase 20 kD subunit and related Fe-S
           oxidoreductase [Thermoanaerobacter tengcongensis MB4]
 gi|20515103|gb|AAM23429.1| NADH:ubiquinone oxidoreductase 20 kD subunit and related Fe-S
           oxidoreductases [Thermoanaerobacter tengcongensis MB4]
          Length = 155

 Score =  105 bits (262), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 47/121 (38%), Positives = 82/121 (67%), Gaps = 4/121 (3%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E++    P YD+ERFG     +P+ +D+++V G++  +    L+ +YDQMPEP+ V+
Sbjct: 28  CDIEILACMTPIYDMERFGMMNVGNPKHADILVVTGSVNTRNKDVLKNIYDQMPEPKVVV 87

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKKIRRV 180
           ++G CA  GG +  +Y+V+ G D+++PVD+YVPGCP   EA+I G+     +L++K +++
Sbjct: 88  AVGVCAATGGVFRDTYNVLGGVDKVIPVDVYVPGCPAKPEAIIDGLYKATEILKEKYKKM 147

Query: 181 G 181
           G
Sbjct: 148 G 148


>gi|88603078|ref|YP_503256.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Methanospirillum
           hungatei JF-1]
 gi|88188540|gb|ABD41537.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Methanospirillum
           hungatei JF-1]
          Length = 170

 Score =  105 bits (262), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 47/116 (40%), Positives = 72/116 (62%)

Query: 64  CCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYV 123
              +E+   S P YD+ERFG    ASPR +D++ V G +T+ M  AL + Y+  PEP++V
Sbjct: 54  AAEIELANLSAPHYDVERFGITFVASPRHADILAVTGVVTHGMKEALIKTYEATPEPKFV 113

Query: 124 ISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           I++G  A  GG Y  +Y+VV   D ++PVD+ +PG PPT  A++ G+L L    ++
Sbjct: 114 IAVGDDACTGGMYIGTYAVVGPVDAVIPVDLKIPGNPPTPAAILEGLLTLMNVAKK 169


>gi|302670765|ref|YP_003830725.1| ech hydrogenase subunit C EchC [Butyrivibrio proteoclasticus B316]
 gi|302395238|gb|ADL34143.1| ech hydrogenase subunit C EchC [Butyrivibrio proteoclasticus B316]
          Length = 228

 Score =  105 bits (261), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 44/120 (36%), Positives = 79/120 (65%), Gaps = 4/120 (3%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E++    P YD+ERFG     +P+ +DV+++ G +  + A  +R++Y+ MP+P+ V+
Sbjct: 20  CDIEVLATMTPLYDVERFGIINTGNPKHADVLLLTGGVNAQTAPVIRQLYNMMPDPKVVV 79

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKKIRRV 180
           + G CA  GG +   Y+++ G D++VPVD+YVPGC    EALI G++    +L++K +++
Sbjct: 80  ACGICACDGGIFKECYNILGGADKVVPVDVYVPGCAVRPEALIEGVVKAVGILEEKRKKL 139


>gi|160879875|ref|YP_001558843.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Clostridium
           phytofermentans ISDg]
 gi|160428541|gb|ABX42104.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Clostridium
           phytofermentans ISDg]
          Length = 144

 Score =  105 bits (261), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 40/107 (37%), Positives = 72/107 (67%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E++    P YD+ERFG     +P+ +D++++ G++  +    ++++Y+QM EP+ V+
Sbjct: 21  CDIEVLACLTPLYDVERFGIINTGNPKHADILLITGSVNEQNIPVVKQIYEQMAEPKIVV 80

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171
           ++G CAN GG +   Y+V  G D+++PVD+YVPGC    EA+I G++
Sbjct: 81  AVGICANSGGIFAECYNVSGGVDKVLPVDVYVPGCAARPEAIIDGVV 127


>gi|309784775|ref|ZP_07679408.1| hydrogenase-4 component I [Shigella dysenteriae 1617]
 gi|308927145|gb|EFP72619.1| hydrogenase-4 component I [Shigella dysenteriae 1617]
          Length = 231

 Score =  105 bits (261), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 51/124 (41%), Positives = 72/124 (58%), Gaps = 4/124 (3%)

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           G   C +E+  A  P +D ERFG    +SPR +D+++  G +T  M     R Y+  P+ 
Sbjct: 22  GCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMRMPALRAYESAPDH 81

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176
           +  +S G+C  GGG +H  YSV  G D IVP+D+++PGCPPT  A I+G      LLQ+K
Sbjct: 82  KICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWLPGCPPTPAATIHGFAVALGLLQQK 141

Query: 177 IRRV 180
           I  V
Sbjct: 142 IHAV 145


>gi|218696313|ref|YP_002403980.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit
           [Escherichia coli 55989]
 gi|218353045|emb|CAU98870.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit
           [Escherichia coli 55989]
          Length = 255

 Score =  105 bits (261), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 51/125 (40%), Positives = 70/125 (56%), Gaps = 4/125 (3%)

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           G   C +E+     P +D ERFG     SPR +D+++  G +T  M S     +   P+P
Sbjct: 47  GCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALCAWQSAPDP 106

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176
           +  IS G+C N GG +H  Y V  G D+IVPVD+Y+PGCPPT  A +YG      LL++K
Sbjct: 107 KICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQK 166

Query: 177 IRRVG 181
           I   G
Sbjct: 167 IHARG 171


>gi|320450490|ref|YP_004202586.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, precursor
           [Thermus scotoductus SA-01]
 gi|320150659|gb|ADW22037.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, precursor
           [Thermus scotoductus SA-01]
          Length = 262

 Score =  105 bits (261), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 54/125 (43%), Positives = 81/125 (64%), Gaps = 4/125 (3%)

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           GLA   + ++    P  D+ RFGF   ASPR +D ++V G ++  MA ALRR Y+ MPEP
Sbjct: 138 GLADSEIALL--GNPFNDMGRFGFQVVASPRHADALLVTGPVSRNMAEALRRTYEAMPEP 195

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI--R 178
           + V+++G+ A  GG +  S  V+ G D++VPVD+YVPG PP   A+++G++LL  ++  R
Sbjct: 196 KGVVAVGNEAISGGVFAGSPQVLSGVDQVVPVDVYVPGDPPRPGAILHGLMLLVGRMTQR 255

Query: 179 RVGNV 183
            VG V
Sbjct: 256 LVGGV 260


>gi|296446945|ref|ZP_06888880.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methylosinus
           trichosporium OB3b]
 gi|296255512|gb|EFH02604.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methylosinus
           trichosporium OB3b]
          Length = 169

 Score =  105 bits (261), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 46/109 (42%), Positives = 70/109 (64%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E+   +   YDLERFG    ASPR +DV++V G +T  M  A+ R Y   P+P++V+
Sbjct: 58  CELEIHALNNAFYDLERFGLRFVASPRHADVLLVTGPMTKNMREAVERTYAATPDPKWVV 117

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLL 173
           ++G CA  GG Y  SY+   G D+++PVD+++ GCPP   AL+ G++ L
Sbjct: 118 AVGDCACSGGLYAESYACEGGVDKVIPVDLHIRGCPPEPVALLEGLIAL 166


>gi|257064036|ref|YP_003143708.1| ech hydrogenase subunit C [Slackia heliotrinireducens DSM 20476]
 gi|256791689|gb|ACV22359.1| ech hydrogenase subunit C [Slackia heliotrinireducens DSM 20476]
          Length = 146

 Score =  104 bits (260), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 45/124 (36%), Positives = 77/124 (62%), Gaps = 4/124 (3%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E++ A  P YD ERFG     +P+ +D+ ++ G++  +    ++ +Y+QM EP+ V+
Sbjct: 21  CDIEVLAALSPVYDAERFGVINTGNPKHADIFVITGSVNERNIDVVKELYEQMVEPKVVV 80

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKKIRRV 180
           + GSCA  GG +H  Y+V+ G D  +PVD+YVPGC    E++I G++    +L++K   +
Sbjct: 81  ACGSCACSGGIFHDCYNVLGGVDNAIPVDVYVPGCAVRPESIIDGVVEAIGILEEKAAAL 140

Query: 181 GNVK 184
            N K
Sbjct: 141 KNKK 144


>gi|307825300|ref|ZP_07655520.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methylobacter
           tundripaludum SV96]
 gi|307733756|gb|EFO04613.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methylobacter
           tundripaludum SV96]
          Length = 171

 Score =  104 bits (260), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 47/109 (43%), Positives = 69/109 (63%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E+   + P YD+ERFG    ASPR +DV++V G ++  M +AL R Y+  P P++VI
Sbjct: 58  CELEIHALNNPFYDIERFGVHFVASPRHADVLLVTGPVSRHMQTALLRTYEATPNPKWVI 117

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLL 173
           + G CA  GG +  SY+       ++PVD+ +PGCPPT  AL+ G+L L
Sbjct: 118 AAGDCAACGGEFGVSYASCGAVSNVIPVDVVIPGCPPTPLALMKGLLGL 166


>gi|258646992|ref|ZP_05734461.1| NADH dehydrogenase I, B subunit [Dialister invisus DSM 15470]
 gi|260404433|gb|EEW97980.1| NADH dehydrogenase I, B subunit [Dialister invisus DSM 15470]
          Length = 156

 Score =  104 bits (260), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 47/127 (37%), Positives = 78/127 (61%), Gaps = 2/127 (1%)

Query: 47  VTWARTGSLMWMTFGLAC--CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTN 104
           + + R  + +    G +C  C +E++   MP YD+ERFG      P+ +DV +V G +  
Sbjct: 1   MAYIRKSAWLIHYDGSSCNGCDIEVLACLMPLYDVERFGIINTGDPKHADVFLVTGGVNV 60

Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164
           +    +R++Y+QMPEP+ V+++G+CA  GG +   Y+++ G D  VPVD+YVPGC    E
Sbjct: 61  QNLPVVRQIYEQMPEPKVVVAVGTCACTGGIFKDCYNMIGGMDHAVPVDVYVPGCAARPE 120

Query: 165 ALIYGIL 171
           A+I G++
Sbjct: 121 AIIDGVV 127


>gi|323141862|ref|ZP_08076723.1| 4Fe-4S binding domain protein [Phascolarctobacterium sp. YIT 12067]
 gi|322413609|gb|EFY04467.1| 4Fe-4S binding domain protein [Phascolarctobacterium sp. YIT 12067]
          Length = 240

 Score =  104 bits (259), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 50/106 (47%), Positives = 67/106 (63%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C  E+   S P YDL R+G A  ASPR +D+++V G +T  +  ALR  YD MPEP+ V+
Sbjct: 124 CDFELGAMSNPVYDLHRYGIAFVASPRHADMLMVTGVVTRNLEQALRMTYDAMPEPKMVM 183

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGI 170
           + G+CA GG  Y  +Y+VV     +VPVDI VPGCPP   A+I  +
Sbjct: 184 ACGACACGGETYGSTYAVVGRAADVVPVDIAVPGCPPRPAAIIVAL 229


>gi|218548077|ref|YP_002381868.1| hydrogenase 4, Fe-S subunit [Escherichia fergusonii ATCC 35469]
 gi|218355618|emb|CAQ88229.1| hydrogenase 4, Fe-S subunit [Escherichia fergusonii ATCC 35469]
          Length = 268

 Score =  104 bits (259), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 50/122 (40%), Positives = 70/122 (57%), Gaps = 4/122 (3%)

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           G   C +E+  A  P +D ERFG    +SPR +D+++  G +T  M     R Y+  P+ 
Sbjct: 59  GCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMRMPALRAYESAPDH 118

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176
           +  +S G+C  GGG +H  Y V  G D IVPVD+++PGCPPT  A I+G      LLQ+K
Sbjct: 119 KICVSYGACGVGGGIFHDLYCVWGGSDTIVPVDVWIPGCPPTPAATIHGFAVALGLLQQK 178

Query: 177 IR 178
           I 
Sbjct: 179 IH 180


>gi|330008023|ref|ZP_08306139.1| NADH ubiquinone oxidoreductase, subunit [Klebsiella sp. MS 92-3]
 gi|328535254|gb|EGF61746.1| NADH ubiquinone oxidoreductase, subunit [Klebsiella sp. MS 92-3]
          Length = 255

 Score =  104 bits (259), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 50/121 (41%), Positives = 69/121 (57%), Gaps = 4/121 (3%)

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           G   C +E+     P +D ERFG     SPR +D+++  G +T  M S   R +   P+P
Sbjct: 47  GCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDP 106

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176
           +  IS G+C N GG +H  Y V  G D+IVPVD+Y+PG PPT  A +YG      LL++K
Sbjct: 107 KICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGSPPTPAATLYGFAMALGLLEQK 166

Query: 177 I 177
           I
Sbjct: 167 I 167


>gi|91978313|ref|YP_570972.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Rhodopseudomonas
           palustris BisB5]
 gi|91684769|gb|ABE41071.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Rhodopseudomonas
           palustris BisB5]
          Length = 177

 Score =  104 bits (259), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 45/113 (39%), Positives = 72/113 (63%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E+   S   YD+ERFG    ASPR +DV++V G +T+ M  ALR  Y+ +P P++V+
Sbjct: 58  CELEIHALSNAYYDVERFGLRFVASPRHADVLMVTGPVTHNMREALRLTYEAVPGPKWVV 117

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
           + G CA  GG +  SY++  G   ++PVD+++PGCPP+   ++ G+L L   +
Sbjct: 118 ATGDCAKDGGCFAGSYAITGGVSAVIPVDLHIPGCPPSPVQILRGLLALLDSV 170


>gi|324112980|gb|EGC06956.1| NADH ubiquinone oxidoreductase [Escherichia fergusonii B253]
 gi|325496480|gb|EGC94339.1| hydrogenase 4, Fe-S subunit [Escherichia fergusonii ECD227]
          Length = 255

 Score =  104 bits (259), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 50/122 (40%), Positives = 70/122 (57%), Gaps = 4/122 (3%)

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           G   C +E+  A  P +D ERFG    +SPR +D+++  G +T  M     R Y+  P+ 
Sbjct: 46  GCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMRMPALRAYESAPDH 105

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176
           +  +S G+C  GGG +H  Y V  G D IVPVD+++PGCPPT  A I+G      LLQ+K
Sbjct: 106 KICVSYGACGVGGGIFHDLYCVWGGSDTIVPVDVWIPGCPPTPAATIHGFAVALGLLQQK 165

Query: 177 IR 178
           I 
Sbjct: 166 IH 167


>gi|307352628|ref|YP_003893679.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanoplanus
           petrolearius DSM 11571]
 gi|307155861|gb|ADN35241.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanoplanus
           petrolearius DSM 11571]
          Length = 146

 Score =  104 bits (259), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 41/107 (38%), Positives = 69/107 (64%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E++    P YD+ERFG     +P+ +DV +V G++  +    ++ +Y QMP+P  V+
Sbjct: 21  CDIEVLACLTPLYDVERFGIINTGNPKHADVFLVTGSVNEQNKPVIKNIYKQMPKPNVVV 80

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171
           ++G+CA  GG +   Y+V  G D+++PVD+YVPGC    EA+I G++
Sbjct: 81  AIGACALSGGVFRECYNVAGGVDKLIPVDVYVPGCAAKPEAIIDGVV 127


>gi|284162674|ref|YP_003401297.1| NADH-quinone oxidoreductase subunit beta [Archaeoglobus profundus
           DSM 5631]
 gi|284012671|gb|ADB58624.1| NADH-quinone oxidoreductase, B subunit [Archaeoglobus profundus DSM
           5631]
          Length = 709

 Score =  104 bits (259), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 62/132 (46%), Positives = 80/132 (60%), Gaps = 1/132 (0%)

Query: 46  LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNK 105
           L  W    SL  +    ACC VE+  A    YD ER G       RQ++++IV G +T K
Sbjct: 2   LKEWGTKWSLWPVHLVTACCGVELAHAYACGYDAERIGSLNYGICRQTNLIIVEGAITRK 61

Query: 106 MASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEA 165
           MA  LR  ++QMP P++VI MG+C   GG +  SY +VR  D +  VD++VPGCPPT EA
Sbjct: 62  MARVLRITWEQMPNPKFVIVMGACGIKGGLFKNSYHMVRPWDVVP-VDVFVPGCPPTPEA 120

Query: 166 LIYGILLLQKKI 177
           LI GI+ LQKKI
Sbjct: 121 LIRGIVALQKKI 132


>gi|115522982|ref|YP_779893.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Rhodopseudomonas
           palustris BisA53]
 gi|115516929|gb|ABJ04913.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Rhodopseudomonas
           palustris BisA53]
          Length = 173

 Score =  103 bits (258), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 45/105 (42%), Positives = 68/105 (64%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E+   +   YD+ERFG    ASPR +DV++V G +T  MA AL+  YD  P P++V+
Sbjct: 58  CELEIHALNNAYYDIERFGLRFVASPRHADVLLVTGPVTKNMADALKTTYDATPSPKWVV 117

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYG 169
           + G CA  GG +  SY+VV G  +++PVD+++PGCPP    ++ G
Sbjct: 118 ACGDCARDGGCFAGSYAVVGGVSQVIPVDLHIPGCPPPPLQILRG 162


>gi|147919863|ref|YP_686386.1| ech hydrogenase, subunit C [uncultured methanogenic archaeon RC-I]
 gi|110621782|emb|CAJ37060.1| Ech hydrogenase, subunit C [uncultured methanogenic archaeon RC-I]
          Length = 157

 Score =  103 bits (258), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 48/126 (38%), Positives = 76/126 (60%), Gaps = 4/126 (3%)

Query: 59  TFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMP 118
           T G   C +E++    PRYD+ RFG     +P+ +DVM+V G +T K    +  +Y+QMP
Sbjct: 19  TGGCNGCDLEILSCLTPRYDISRFGVYSTGNPKHADVMLVVGPVTLKYKEIITNLYNQMP 78

Query: 119 EPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILL----LQ 174
           +P+ V+++GSCA+ G  Y   Y      D+++PVD+YVPGC    E +I G++L    L 
Sbjct: 79  DPKVVMAVGSCASTGAIYQGCYGTCGSLDKVIPVDVYVPGCNCRPEGIIDGLVLALDILN 138

Query: 175 KKIRRV 180
           +K R++
Sbjct: 139 EKERKI 144


>gi|57234359|ref|YP_181588.1| hydrogenase, group 4, EchC subunit, putative [Dehalococcoides
           ethenogenes 195]
 gi|57224807|gb|AAW39864.1| hydrogenase, group 4, EchC subunit, putative [Dehalococcoides
           ethenogenes 195]
          Length = 155

 Score =  103 bits (258), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 42/108 (38%), Positives = 69/108 (63%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E++    P YD+ERFG     +P+ SDV++V G    +    L+ +Y QMP+P+ VI
Sbjct: 25  CDIEILACLTPLYDVERFGIVNMGNPKHSDVLLVTGPANKRNYRVLQNLYQQMPDPKVVI 84

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILL 172
            +G+C   GG +H   +++ G D+++PVD+YVPGC    EA+I G+++
Sbjct: 85  VIGTCGCSGGVFHNCPNILGGVDKVIPVDVYVPGCAARPEAIIDGVVM 132


>gi|125975501|ref|YP_001039411.1| ech hydrogenase subunit C [Clostridium thermocellum ATCC 27405]
 gi|256004211|ref|ZP_05429194.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Clostridium
           thermocellum DSM 2360]
 gi|281419466|ref|ZP_06250480.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Clostridium
           thermocellum JW20]
 gi|125715726|gb|ABN54218.1| ech hydrogenase subunit C [Clostridium thermocellum ATCC 27405]
 gi|255991801|gb|EEU01900.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Clostridium
           thermocellum DSM 2360]
 gi|281406872|gb|EFB37136.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Clostridium
           thermocellum JW20]
 gi|316939621|gb|ADU73655.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Clostridium
           thermocellum DSM 1313]
          Length = 145

 Score =  103 bits (257), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 40/107 (37%), Positives = 72/107 (67%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E++    P YD+ERFG     +P+ +D++++ G++  +  S ++++Y+QM +P+ V+
Sbjct: 21  CDIEVLACLTPLYDIERFGVINTGNPKHADILLITGSINEQNKSVVKQLYEQMADPKVVV 80

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171
           ++G CA  GG +   Y+V  G D+I+PVD+YVPGC    EA+I G++
Sbjct: 81  AVGICAATGGIFSECYNVSGGVDKIIPVDVYVPGCAARPEAIIDGVV 127


>gi|313683183|ref|YP_004060921.1| ech hydrogenase subunit c [Sulfuricurvum kujiense DSM 16994]
 gi|313156043|gb|ADR34721.1| ech hydrogenase subunit C [Sulfuricurvum kujiense DSM 16994]
          Length = 173

 Score =  103 bits (257), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 46/120 (38%), Positives = 75/120 (62%), Gaps = 4/120 (3%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E++ A  P+YDLERFG     +P+QSD+ +V G +T +    L  +Y Q+PEP+ V+
Sbjct: 25  CDIEILAALSPKYDLERFGVINTGNPKQSDIFLVTGPVTYRSRERLVELYSQIPEPKVVV 84

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKKIRRV 180
           ++GSC   GG +   Y+V  G DR +PVD+YVPGC  + + +I  ++    +L+ K + +
Sbjct: 85  AVGSCTTTGGVFRGMYNVEDGIDRYIPVDVYVPGCASSPQLIIDALVKAGEILESKSKEI 144


>gi|270308166|ref|YP_003330224.1| hydrogenase, EchC subunit [Dehalococcoides sp. VS]
 gi|270154058|gb|ACZ61896.1| hydrogenase, EchC subunit [Dehalococcoides sp. VS]
          Length = 155

 Score =  103 bits (257), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 42/108 (38%), Positives = 69/108 (63%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E++    P YD+ERFG     +P+ SDV++V G    +    L+ +Y QMP+P+ VI
Sbjct: 25  CDIEILACLTPIYDVERFGIVNMGNPKHSDVLLVTGPANKRNYRVLQNLYQQMPDPKVVI 84

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILL 172
            +G+C   GG +H   +++ G D+++PVD+YVPGC    EA+I G+++
Sbjct: 85  VIGTCGCSGGVFHNCPNILGGVDKVIPVDVYVPGCAARPEAIIDGVVM 132


>gi|269215531|ref|ZP_06159385.1| NADH dehydrogenase I, B subunit [Slackia exigua ATCC 700122]
 gi|269131018|gb|EEZ62093.1| NADH dehydrogenase I, B subunit [Slackia exigua ATCC 700122]
          Length = 147

 Score =  103 bits (257), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 42/124 (33%), Positives = 78/124 (62%), Gaps = 4/124 (3%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E++ +  P YD ERFG     +P+ +D+ +V G++  +    ++ +YDQM +P+ V+
Sbjct: 21  CDIEVLASLTPLYDAERFGVINTGNPKHADIFLVTGSVNERNIKVIQEIYDQMVDPKVVV 80

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKKIRRV 180
           ++G CA  GG +H  Y+V+ G D+ +PVD+YVPGC  + E +I G++    +L++K   +
Sbjct: 81  AVGICACSGGIFHDCYNVIGGVDQAIPVDVYVPGCAASPENIIDGVVRGVAVLEQKAAEL 140

Query: 181 GNVK 184
            + +
Sbjct: 141 ASAR 144


>gi|296134788|ref|YP_003642030.1| hypothetical protein Tint_0288 [Thiomonas intermedia K12]
 gi|295794910|gb|ADG29700.1| hypothetical protein Tint_0288 [Thiomonas intermedia K12]
          Length = 172

 Score =  103 bits (257), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 57/151 (37%), Positives = 84/151 (55%), Gaps = 15/151 (9%)

Query: 23  DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLAC--CAVEMMQASMPRYDLE 80
           DA+  RIS+++ H               R  ++  +  G +C  C +E+   S P Y++E
Sbjct: 28  DAEVQRISADLLH------------LIGRAPAIRVVDAG-SCNGCELEINALSNPYYNIE 74

Query: 81  RFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSY 140
             G    ASPR +D+++V G ++  M  ALRR YD MPEPR V++ G CA G G +   Y
Sbjct: 75  GLGVHFVASPRHADLLLVTGPVSRHMELALRRTYDAMPEPRLVVAAGDCAAGCGVHSQGY 134

Query: 141 SVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171
           +V      ++PVD+ VPGCPP+  AL+ GIL
Sbjct: 135 AVCGRVAEVLPVDVTVPGCPPSPVALLQGIL 165


>gi|150401363|ref|YP_001325129.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanococcus
           aeolicus Nankai-3]
 gi|150014066|gb|ABR56517.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanococcus
           aeolicus Nankai-3]
          Length = 246

 Score =  103 bits (257), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 46/115 (40%), Positives = 68/115 (59%)

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           G   C  ++   + P YDL RFG    ASPR +D +++ G +T  M  AL + YD  P P
Sbjct: 132 GCNACDADINVLNTPVYDLSRFGIKFVASPRHADGLVITGPVTKNMELALMKTYDATPSP 191

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175
           ++VI++G+CA  GG +  +  VV G D+I+PVD+Y+PGCPP     +Y  +   K
Sbjct: 192 KFVIAVGTCAISGGIFRENEEVVGGVDKILPVDLYIPGCPPHPFTNLYAFVKFFK 246


>gi|282165307|ref|YP_003357692.1| putative [NiFe]-hydrogenase small subunit [Methanocella paludicola
           SANAE]
 gi|282157621|dbj|BAI62709.1| putative [NiFe]-hydrogenase small subunit [Methanocella paludicola
           SANAE]
          Length = 136

 Score =  103 bits (257), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 50/118 (42%), Positives = 72/118 (61%), Gaps = 2/118 (1%)

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           G   C +E++    PRYDLER G    ASPR +D+++V G +       L RVY Q PEP
Sbjct: 18  GCVGCDIELLACMGPRYDLERLGIKWVASPRYADILLVTGPVPLHTKPFLERVYAQTPEP 77

Query: 121 RYVISMGSCANGGGYY--HYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKK 176
           + VI+MG+C    G +    +YS+    ++I+PVD+ +PGCPP  EA+I GIL + +K
Sbjct: 78  KRVIAMGACGTSCGVFIDDENYSIAGPVEKIIPVDVKIPGCPPKPEAIIDGILKVMRK 135


>gi|83591007|ref|YP_431016.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Moorella
           thermoacetica ATCC 39073]
 gi|83573921|gb|ABC20473.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Moorella
           thermoacetica ATCC 39073]
          Length = 252

 Score =  103 bits (256), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 51/122 (41%), Positives = 70/122 (57%), Gaps = 4/122 (3%)

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           G   C +E+     P YD ER GF   ASPR +D+++  G +T  M     R Y   P+P
Sbjct: 31  GCNGCEIEIFATISPVYDPERLGFKVVASPRHADILLFTGPMTRAMRLPAIRAYQAAPDP 90

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYG----ILLLQKK 176
           + V++ G+C   GG +H  YSV  G   I PVD+Y+PGCPPT  A IYG    + LLQ+K
Sbjct: 91  KIVVAYGTCGCSGGIFHDCYSVWGGTGSIFPVDVYIPGCPPTPGATIYGLGLALDLLQQK 150

Query: 177 IR 178
           ++
Sbjct: 151 MK 152


>gi|212223636|ref|YP_002306872.1| NADH dehydrogenase subunit B [Thermococcus onnurineus NA1]
 gi|212008593|gb|ACJ15975.1| nuoB NADH dehydrogenase I, subunit B [Thermococcus onnurineus NA1]
          Length = 190

 Score =  103 bits (256), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 50/135 (37%), Positives = 77/135 (57%)

Query: 44  DQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLT 103
           + L  +AR  SL  ++F   C  +EM      RYDLERFG  P  SPRQ D+ ++ G +T
Sbjct: 8   EPLFNYARKKSLWIVSFCTGCGGIEMPPLMTSRYDLERFGMIPDPSPRQYDLFLITGYVT 67

Query: 104 NKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTA 163
            K    +   Y+  P+P+YV++ GSC   GG Y  +Y+ ++  D+ +PVD+ + GC P  
Sbjct: 68  PKTLKRIIITYEMAPDPKYVLAHGSCPLNGGIYWDAYNAIKHLDKYIPVDVVIAGCMPRP 127

Query: 164 EALIYGILLLQKKIR 178
           EA++ GI  + + I 
Sbjct: 128 EAVMDGIQKIMEMIE 142


>gi|20808124|ref|NP_623295.1| Ni,Fe-hydrogenase III small subunit [Thermoanaerobacter
           tengcongensis MB4]
 gi|254479096|ref|ZP_05092449.1| NADH ubiquinone oxidoreductase, 20 Kd subunit family
           [Carboxydibrachium pacificum DSM 12653]
 gi|20516711|gb|AAM24899.1| Ni,Fe-hydrogenase III small subunit [Thermoanaerobacter
           tengcongensis MB4]
 gi|214034978|gb|EEB75699.1| NADH ubiquinone oxidoreductase, 20 Kd subunit family
           [Carboxydibrachium pacificum DSM 12653]
          Length = 247

 Score =  103 bits (256), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 48/118 (40%), Positives = 69/118 (58%), Gaps = 4/118 (3%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E+  A  P YD ERFG    +SPR +D+++  G +T  M     R Y   P+P+ V+
Sbjct: 35  CEIEIFAAISPVYDPERFGIKIVSSPRHADILLFTGPMTRAMRLPAIRAYKAAPDPKIVV 94

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKKIR 178
           + G+C   GG +H  Y V  G D+  PVD+Y+PGCPPT  A +YG+     LL +KI+
Sbjct: 95  AYGACGCSGGIFHDCYCVWGGIDKFFPVDVYIPGCPPTPAATLYGLAVALDLLHQKIK 152


>gi|269216332|ref|ZP_06160186.1| hydrogenase-4 component I [Slackia exigua ATCC 700122]
 gi|269130591|gb|EEZ61669.1| hydrogenase-4 component I [Slackia exigua ATCC 700122]
          Length = 261

 Score =  103 bits (256), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 44/112 (39%), Positives = 65/112 (58%)

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           G   C +E+     P +D ERFG     SPR +D+++  G +T  M     R Y+  P+P
Sbjct: 49  GCNACEIEIFATITPVFDAERFGIKNTPSPRHADILVFTGAVTRAMRLPAMRAYEGAPDP 108

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILL 172
           + V+S G+C   GG +H +Y V  G D+I+PVD+Y+PGCPP+    IYG  +
Sbjct: 109 KLVVSYGACGCTGGIFHDNYCVWGGTDQILPVDVYIPGCPPSPAQTIYGFAM 160


>gi|295401603|ref|ZP_06811571.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|294976370|gb|EFG51980.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Geobacillus
           thermoglucosidasius C56-YS93]
          Length = 247

 Score =  103 bits (256), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 47/122 (38%), Positives = 71/122 (58%), Gaps = 4/122 (3%)

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           G   C +E+  A  P +D ERFG     +PR +D++++ G +T  M     R Y   P+P
Sbjct: 31  GCNGCEIEIFSAISPTFDAERFGIKVVPTPRHADILLITGPMTRAMRLPAIRAYQAAPDP 90

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176
           + V++ G+C+  GG +H  Y V  G +   PVD+Y+PGCPPT  A +YG+     LLQ+K
Sbjct: 91  KIVVAYGACSCSGGIFHDCYGVWGGAESAFPVDVYIPGCPPTPAATLYGLAMALDLLQQK 150

Query: 177 IR 178
           I+
Sbjct: 151 IK 152


>gi|291519870|emb|CBK75091.1| ech hydrogenase subunit C [Butyrivibrio fibrisolvens 16/4]
          Length = 147

 Score =  103 bits (256), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 39/107 (36%), Positives = 72/107 (67%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E++  + P YD+ERFG     +P  +D+ ++ G + ++  + ++++Y+QMP+P+ VI
Sbjct: 21  CDIEVLACTTPVYDVERFGVINTGNPMHADIFLITGGINSQNEAVVKQIYEQMPQPKVVI 80

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171
           ++G+CA  GG +   Y++  G D ++PVDIYVPGC    E++I G++
Sbjct: 81  AVGTCACTGGIFKECYNIKGGADTVIPVDIYVPGCAARPESIIDGVV 127


>gi|312110881|ref|YP_003989197.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Geobacillus sp.
           Y4.1MC1]
 gi|311215982|gb|ADP74586.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Geobacillus sp.
           Y4.1MC1]
          Length = 247

 Score =  103 bits (256), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 47/122 (38%), Positives = 71/122 (58%), Gaps = 4/122 (3%)

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           G   C +E+  A  P +D ERFG     +PR +D++++ G +T  M     R Y   P+P
Sbjct: 31  GCNGCEIEIFSAISPTFDAERFGIKVVPTPRHADILLITGPMTRAMRLPAIRAYQAAPDP 90

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176
           + V++ G+C+  GG +H  Y V  G +   PVD+Y+PGCPPT  A +YG+     LLQ+K
Sbjct: 91  KIVVAYGACSCSGGIFHDCYGVWGGAESAFPVDVYIPGCPPTPAATLYGLAIALDLLQQK 150

Query: 177 IR 178
           I+
Sbjct: 151 IK 152


>gi|198283919|ref|YP_002220240.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218667213|ref|YP_002426553.1| hydrogenase-4, I subunit [Acidithiobacillus ferrooxidans ATCC
           23270]
 gi|198248440|gb|ACH84033.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218519426|gb|ACK80012.1| hydrogenase-4, I subunit [Acidithiobacillus ferrooxidans ATCC
           23270]
          Length = 165

 Score =  103 bits (256), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 47/107 (43%), Positives = 69/107 (64%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E+     P Y LE+ GF   ASPR +DV+ V G +T  M +AL+  ++  PEPR VI
Sbjct: 50  CELELNALGGPHYGLEQAGFHFTASPRHADVLTVTGPVTRHMVAALQDCHNATPEPRRVI 109

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171
           ++G CA GGG +  SY+V+     ++PVD+ +PGCPP  +AL+ G+L
Sbjct: 110 AVGDCACGGGAFRGSYAVMGSAAEVLPVDLQIPGCPPDPDALLRGLL 156


>gi|158425979|ref|YP_001527271.1| NADH ubiquinone oxidoreductase [Azorhizobium caulinodans ORS 571]
 gi|158332868|dbj|BAF90353.1| NADH ubiquinone oxidoreductase [Azorhizobium caulinodans ORS 571]
 gi|211948048|gb|ACJ13747.1| HyqI [Azorhizobium caulinodans ORS 571]
          Length = 170

 Score =  102 bits (255), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 46/112 (41%), Positives = 70/112 (62%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E+   S   YDLERFG    ASPR +DV++V G +T  M  AL R Y+  P P++V+
Sbjct: 58  CELEIHALSNAYYDLERFGLRFVASPRHADVLLVTGPVTTNMREALVRTYEATPGPKWVV 117

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKK 176
           + GSCA  GG +  SY+     + ++PVD+ +PGCPP   +L+ G++ L ++
Sbjct: 118 AAGSCACDGGLFAQSYACAGAVENVIPVDLRIPGCPPAPLSLLKGLIALLQR 169


>gi|312880265|ref|ZP_07740065.1| Membrane bound hydrogenase subunit mbhJ [Aminomonas paucivorans DSM
           12260]
 gi|310783556|gb|EFQ23954.1| Membrane bound hydrogenase subunit mbhJ [Aminomonas paucivorans DSM
           12260]
          Length = 153

 Score =  102 bits (255), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 43/106 (40%), Positives = 70/106 (66%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E++    PRYD+ER G     SPR +D ++V G +T+ M   ++R++ Q+P+P+ VI
Sbjct: 27  CDIEIVATLTPRYDIERLGMKLVGSPRHADALLVTGPVTHYMVERVKRIHAQIPDPKVVI 86

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGI 170
            +G+C   G  ++ SY++    DR++PVD+YV GCPP  EA+I G+
Sbjct: 87  CVGNCGCSGDVFYKSYNLEGPVDRVLPVDVYVHGCPPRPEAMIDGV 132


>gi|303241790|ref|ZP_07328286.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Acetivibrio
           cellulolyticus CD2]
 gi|302590671|gb|EFL60423.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Acetivibrio
           cellulolyticus CD2]
          Length = 154

 Score =  102 bits (255), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 43/124 (34%), Positives = 78/124 (62%), Gaps = 4/124 (3%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E++    P YD ERFG     +P+ +D+ +V G++  +    ++ +Y+QMP+P+ V+
Sbjct: 21  CDIEVLACLTPMYDAERFGIINTGNPKHADIFVVTGSVNEQNIDVIKNLYNQMPDPKVVV 80

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKKIRRV 180
           ++G CA  GG +   Y++  G D+++PVD+YV GC    EA+I GI+    +L++K +++
Sbjct: 81  AVGICAATGGIFSECYNIQGGIDKVLPVDVYVAGCAARPEAIIDGIVQAVGILEEKHKKM 140

Query: 181 GNVK 184
            N K
Sbjct: 141 KNGK 144


>gi|182679430|ref|YP_001833576.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Beijerinckia indica
           subsp. indica ATCC 9039]
 gi|182635313|gb|ACB96087.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Beijerinckia indica
           subsp. indica ATCC 9039]
          Length = 177

 Score =  102 bits (255), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 49/113 (43%), Positives = 70/113 (61%), Gaps = 1/113 (0%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E+       YDLERFG    ASPR +DV++V G +T+ M  AL R YD  P P++V+
Sbjct: 56  CELEINALGNAFYDLERFGLRFVASPRHADVLLVTGPVTHNMREALLRTYDATPNPKWVV 115

Query: 125 SMGSCANGGGYYHYSYSVVR-GCDRIVPVDIYVPGCPPTAEALIYGILLLQKK 176
           + G+CA G G +  SY+  + G   ++ VD+Y+PGCPPT   L+ G+L L  K
Sbjct: 116 AAGTCALGEGVFAESYACQKGGVSAVIAVDLYIPGCPPTPTDLLKGLLALITK 168


>gi|315230620|ref|YP_004071056.1| NADH-ubiquinone oxidoreductase subunit B [Thermococcus barophilus
           MP]
 gi|315183648|gb|ADT83833.1| NADH-ubiquinone oxidoreductase chain B [Thermococcus barophilus MP]
          Length = 190

 Score =  102 bits (255), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 49/135 (36%), Positives = 77/135 (57%)

Query: 44  DQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLT 103
           + L  +AR  SL  + F   C  +EM      RYDLERFG  P  +PR +D+ ++ G +T
Sbjct: 8   EPLFEFARKRSLWIVAFCTGCGGIEMPPLMTSRYDLERFGMMPNPAPRMADLFLITGYVT 67

Query: 104 NKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTA 163
            K    +   Y+  P+P+YV++ GSC   GG Y  +Y+ ++  D+ +PVD+Y+ GC P  
Sbjct: 68  PKTLKRIIITYEMQPDPKYVMAHGSCPLNGGIYWDAYNAIKHLDKYIPVDVYIAGCMPRP 127

Query: 164 EALIYGILLLQKKIR 178
           EA++ GI  + + I 
Sbjct: 128 EAVMDGIKKIMEMIE 142


>gi|182415924|ref|YP_001820990.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Opitutus terrae
           PB90-1]
 gi|177843138|gb|ACB77390.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Opitutus terrae
           PB90-1]
          Length = 338

 Score =  102 bits (255), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 40/107 (37%), Positives = 67/107 (62%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E +    P YD+ER G     +P+ +D+ +V G +  +    +R +Y Q+PEP+ V+
Sbjct: 21  CDIETLACLTPLYDVERLGVINTGNPKHADIFLVTGAVNEQSKEVIRNIYHQLPEPKVVV 80

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171
           ++G CA+ GG +   Y++  G DR++PVD+YVPGC    EA+I G++
Sbjct: 81  AIGVCASSGGIFRDCYNIAGGVDRVIPVDVYVPGCAARPEAIIDGVV 127


>gi|319790466|ref|YP_004152099.1| NADH-quinone oxidoreductase, B subunit [Thermovibrio ammonificans
           HB-1]
 gi|317114968|gb|ADU97458.1| NADH-quinone oxidoreductase, B subunit [Thermovibrio ammonificans
           HB-1]
          Length = 156

 Score =  102 bits (255), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 59/135 (43%), Positives = 81/135 (60%)

Query: 45  QLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTN 104
           +   W+R  S   + F   CC++E++    PR+D ER+GF    SPRQ+D +IV G ++ 
Sbjct: 4   KFFDWSRANSPWGVHFCSGCCSLEVLALMGPRFDWERYGFMMTPSPRQADFIIVTGLVSR 63

Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164
           K+   L RVY QMPEPRYV  MG+CA GGG Y  S  V     + +P D++V GCPP  E
Sbjct: 64  KVLPVLLRVYQQMPEPRYVFGMGACAAGGGPYWDSDFVAVDVSQYIPFDVFVAGCPPNPE 123

Query: 165 ALIYGILLLQKKIRR 179
           A + G L L++ I R
Sbjct: 124 ATLEGFLRLKEIILR 138


>gi|256826557|ref|YP_003150516.1| Ni,Fe-hydrogenase III small subunit [Cryptobacterium curtum DSM
           15641]
 gi|256582700|gb|ACU93834.1| Ni,Fe-hydrogenase III small subunit [Cryptobacterium curtum DSM
           15641]
          Length = 283

 Score =  102 bits (254), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 43/112 (38%), Positives = 65/112 (58%)

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           G   C +E+     P +D ERFG    ASPR +D+++  G +T  M     R Y+  P+P
Sbjct: 68  GCNGCEIEIFGTLTPVFDAERFGIKNMASPRHADILVYTGAVTRAMRLPALRAYEAAPDP 127

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILL 172
           + ++S G+C   GG +H +Y V  G D++ PVD+Y+PGCPP+    IYG  +
Sbjct: 128 KLIVSYGACGCTGGIFHDNYCVWGGTDKLFPVDVYIPGCPPSPAQTIYGFAM 179


>gi|261368110|ref|ZP_05980993.1| NADH dehydrogenase I, B subunit [Subdoligranulum variabile DSM
           15176]
 gi|282569868|gb|EFB75403.1| NADH dehydrogenase I, B subunit [Subdoligranulum variabile DSM
           15176]
          Length = 152

 Score =  102 bits (254), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 39/107 (36%), Positives = 71/107 (66%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E++  + P+YD+ERFG      P Q+D++++ G + ++    +R++Y+QMP P+ V+
Sbjct: 21  CDIEVLACTTPKYDIERFGIINTGDPFQADILLITGGVNSQCEGVVRQLYEQMPNPKVVV 80

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171
           ++G CA  GG +   Y++  G D ++PVD+YVPGC    +A+I G++
Sbjct: 81  AVGICACTGGVFKDCYNIKGGIDTVIPVDVYVPGCAARPQAIIDGVV 127


>gi|160902353|ref|YP_001567934.1| NADH dehydrogenase subunit B [Petrotoga mobilis SJ95]
 gi|160359997|gb|ABX31611.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Petrotoga mobilis
           SJ95]
          Length = 195

 Score =  102 bits (254), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 55/145 (37%), Positives = 81/145 (55%), Gaps = 12/145 (8%)

Query: 44  DQLVTWART-----GSLMWMT-FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           D +  W +      G  +WM  +   C AVE+      R+D+ER G  P A+PRQ+DV++
Sbjct: 19  DTITFWEKIKNIFRGKSLWMLHYCTGCGAVELPPTMTARFDMERLGMGPMATPRQADVLL 78

Query: 98  VAGTLTNKMASALRRV---YDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154
           + G L+ K    LRRV   Y+QM  P+Y++  GSC   GG Y+ SY+V+   D  +PVD+
Sbjct: 79  ITGYLSVK---TLRRVIYTYEQMMTPKYLVGFGSCTINGGIYYDSYAVINRLDYYLPVDL 135

Query: 155 YVPGCPPTAEALIYGILLLQKKIRR 179
           YV GC P  EA++     L+  I +
Sbjct: 136 YVAGCMPRPEAIMNTFKTLENMITK 160


>gi|206895842|ref|YP_002247251.1| hydrogenase-4 component I [Coprothermobacter proteolyticus DSM
           5265]
 gi|206738459|gb|ACI17537.1| hydrogenase-4 component I [Coprothermobacter proteolyticus DSM
           5265]
          Length = 157

 Score =  102 bits (253), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 44/107 (41%), Positives = 66/107 (61%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E++ A  P+YD ERFG     SPR +D+++  G +T     ++ RV DQ+PEP+ ++
Sbjct: 23  CDIEILAALTPKYDAERFGVKLVGSPRHADIIVATGPVTAVAKESVLRVIDQVPEPKAIV 82

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171
            +G C   GG +   YS+    D +VPVD+YV GCPP  E ++ GIL
Sbjct: 83  VVGVCGITGGVFRGGYSIAGPLDTLVPVDVYVFGCPPKPEGIMVGIL 129


>gi|332087933|gb|EGI93058.1| hydrogenase-4 component I [Shigella boydii 5216-82]
          Length = 252

 Score =  102 bits (253), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 50/124 (40%), Positives = 71/124 (57%), Gaps = 4/124 (3%)

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           G   C +E+  A  P +D ERFG    +S R +D+++  G +T  M     R Y+  P+ 
Sbjct: 43  GCNACEIEIFAAITPVFDAERFGIKVISSLRHADILLFTGAVTRAMRMPALRAYESAPDH 102

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176
           +  +S G+C  GGG +H  YSV  G D IVP+D+++PGCPPT  A I+G      LLQ+K
Sbjct: 103 KICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHGFAVALGLLQQK 162

Query: 177 IRRV 180
           I  V
Sbjct: 163 IHAV 166


>gi|297567576|ref|YP_003686547.1| hypothetical protein Mesil_3218 [Meiothermus silvanus DSM 9946]
 gi|297567775|ref|YP_003686746.1| hypothetical protein Mesil_3429 [Meiothermus silvanus DSM 9946]
 gi|296852025|gb|ADH65039.1| hypothetical protein Mesil_3218 [Meiothermus silvanus DSM 9946]
 gi|296852224|gb|ADH65238.1| hypothetical protein Mesil_3429 [Meiothermus silvanus DSM 9946]
          Length = 290

 Score =  102 bits (253), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 47/113 (41%), Positives = 74/113 (65%)

Query: 68  EMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMG 127
           E+  A  P +D+ RFGF+  ASPR +D ++V G ++  M  AL R Y   PEP+ V+++G
Sbjct: 144 EVALAGNPFHDMSRFGFSVVASPRHADALLVTGPVSQNMREALWRTYQATPEPKGVVAVG 203

Query: 128 SCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           + A GG  +  S +VV G D++VPVD+YVPG P    ++++G+LLL  + ++V
Sbjct: 204 NEAIGGEIFAESAAVVGGVDQVVPVDVYVPGSPARPASILHGLLLLSGQTQQV 256


>gi|258514106|ref|YP_003190328.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfotomaculum
           acetoxidans DSM 771]
 gi|257777811|gb|ACV61705.1| Hydrogenase, small subunit-like protein [Desulfotomaculum
           acetoxidans DSM 771]
          Length = 236

 Score =  102 bits (253), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 44/107 (41%), Positives = 69/107 (64%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C  E+   + P YD++++G    ASPR +D+++V G +T  +  AL + Y+  P P  V+
Sbjct: 124 CDFEINSMTNPVYDIQQYGVDFVASPRHADMLLVTGVVTRNLEIALHKTYEACPRPALVV 183

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171
           ++G+CA GGG +  +Y+   G D+ +PVD+YVPGCPPT   +I GIL
Sbjct: 184 AVGACACGGGVFKEAYASGGGVDKFLPVDVYVPGCPPTPAQIIKGIL 230


>gi|288940086|ref|YP_003442326.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Allochromatium
           vinosum DSM 180]
 gi|288895458|gb|ADC61294.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Allochromatium
           vinosum DSM 180]
          Length = 154

 Score =  102 bits (253), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 40/107 (37%), Positives = 70/107 (65%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E++    P YD+ERFG     +P+ +D+ +V G++  +    +  +Y QMP+P+ V+
Sbjct: 21  CDIELLACLTPTYDVERFGIVNTGNPKHADIFLVTGSVNEESRKVVENLYAQMPDPKVVV 80

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171
           ++G+CA  GG +  +Y+V  G D+++PVD+YVPGC    E++I GI+
Sbjct: 81  AIGACALSGGIFRDAYNVYGGIDQVLPVDVYVPGCAARPESIIDGIV 127


>gi|188996637|ref|YP_001930888.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Sulfurihydrogenibium
           sp. YO3AOP1]
 gi|188931704|gb|ACD66334.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Sulfurihydrogenibium
           sp. YO3AOP1]
          Length = 173

 Score =  101 bits (252), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 44/112 (39%), Positives = 70/112 (62%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C  E+   S P YD+ERFG    ASP+ +D +++ G LT  M  A+ + Y+ +P P+++I
Sbjct: 57  CEYEISALSNPYYDIERFGVKFVASPKHADAIMITGCLTRNMYEAVMKAYENVPNPKFII 116

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKK 176
           ++G CA  GG +  SY+V+ G    +P+DI++ GCPP    +I G+L+L  K
Sbjct: 117 AVGDCALDGGTFKGSYAVMDGIKDKLPIDIWIKGCPPEPIDIISGLLILLNK 168


>gi|57233683|ref|YP_182267.1| hydrogenase, group 4, HycG subunit, putative [Dehalococcoides
           ethenogenes 195]
 gi|57224131|gb|AAW39188.1| hydrogenase, group 4, HycG subunit, putative [Dehalococcoides
           ethenogenes 195]
          Length = 171

 Score =  101 bits (252), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 56/162 (34%), Positives = 91/162 (56%), Gaps = 9/162 (5%)

Query: 19  LEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCA-VEMMQASMPRY 77
           + K DADF ++       GF + +    V + R+ ++  +  G    A +E+   S P Y
Sbjct: 17  MPKGDADFDKL-------GFALKTEIHAV-FGRSLAIRALDSGSDNSAEIELNNLSNPYY 68

Query: 78  DLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137
           D+ERFG +  ASPR +D++IV G ++  MA A+R+ +D MP P+ VI++G  A G     
Sbjct: 69  DIERFGLSFVASPRHADILIVTGAVSQNMAIAVRKTFDAMPSPKLVIALGDDACGSSIVC 128

Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
             Y V+ G D+I+PVD+ +PG PP    +I  +L L + + +
Sbjct: 129 GGYGVLGGVDKILPVDLKIPGNPPEPIQIITALLGLMRSLGK 170


>gi|256810299|ref|YP_003127668.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanocaldococcus
           fervens AG86]
 gi|256793499|gb|ACV24168.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanocaldococcus
           fervens AG86]
          Length = 148

 Score =  101 bits (252), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 44/118 (37%), Positives = 75/118 (63%), Gaps = 1/118 (0%)

Query: 59  TFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMP 118
           T G   C +E++    PRYD+E++G     +PR++DV++V G +T + A  L+ +Y++ P
Sbjct: 18  TGGCNGCDIEIVSCLAPRYDIEQYGIYVHNNPREADVLLVTGPVTLQWAERLKEIYEKTP 77

Query: 119 EPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKK 176
           EP+ V+++G+CA  GG +   + VV G D+++PVD  +PGCPP    +I  +L +  K
Sbjct: 78  EPKVVVAVGACALSGGIFKEGH-VVGGVDKVIPVDAKIPGCPPRPSEIIEAVLKVAPK 134


>gi|241753592|ref|XP_002401137.1| NADH-plastoquinone oxidoreductase, putative [Ixodes scapularis]
 gi|215508356|gb|EEC17810.1| NADH-plastoquinone oxidoreductase, putative [Ixodes scapularis]
          Length = 162

 Score =  101 bits (252), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 44/48 (91%), Positives = 47/48 (97%)

Query: 111 RRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPG 158
           R+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRI+PVDIYVPG
Sbjct: 78  RKVYDQMLEPRWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVPG 125


>gi|294634805|ref|ZP_06713329.1| hydrogenase-4 component I [Edwardsiella tarda ATCC 23685]
 gi|291091773|gb|EFE24334.1| hydrogenase-4 component I [Edwardsiella tarda ATCC 23685]
          Length = 205

 Score =  101 bits (251), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 48/108 (44%), Positives = 65/108 (60%), Gaps = 4/108 (3%)

Query: 75  PRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGG 134
           P +D ERFG    ASPR +D+++  G +T  M     R Y   P+P+ VIS G+C   GG
Sbjct: 2   PLFDAERFGIKVVASPRHADILLFTGAVTRAMRVPALRAYQSAPDPKIVISYGACGCSGG 61

Query: 135 YYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKKIR 178
            +H  Y V  G D+IVPVD+Y+PGCPPT  A +YG      LL +K++
Sbjct: 62  IFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAVALGLLDQKLK 109


>gi|15668695|ref|NP_247494.1| carbon monoxide dehydrogenase hydrogenase subunit CooL
           [Methanocaldococcus jannaschii DSM 2661]
 gi|38503282|sp|Q57936|Y516_METJA RecName: Full=Uncharacterized protein MJ0516
 gi|2826290|gb|AAB98505.1| carbon monoxide dehydrogenase, hydrogenase subunit CooL (cooL)
           [Methanocaldococcus jannaschii DSM 2661]
          Length = 148

 Score =  100 bits (250), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 45/118 (38%), Positives = 75/118 (63%), Gaps = 1/118 (0%)

Query: 59  TFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMP 118
           T G   C +E++    PRYD+E++G     +PR++DV++V G +T + A  L+ +Y++ P
Sbjct: 18  TGGCNGCDIEIVACLAPRYDIEQYGIYVHNNPREADVLLVTGPVTLQWAERLKEIYEKTP 77

Query: 119 EPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKK 176
           EP+ V+++G+CA  GG +   + VV G D+++PVD  +PGCPP    +I  IL +  K
Sbjct: 78  EPKIVVAVGACALSGGIFKEGH-VVGGVDKVIPVDAKIPGCPPRPSEIIETILKVAPK 134


>gi|154244129|ref|YP_001415087.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Xanthobacter
           autotrophicus Py2]
 gi|154158214|gb|ABS65430.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Xanthobacter
           autotrophicus Py2]
          Length = 170

 Score =  100 bits (250), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 45/98 (45%), Positives = 61/98 (62%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E+       YDLERFG    ASPR +DV++V G +   MA AL+R YD  P P++V+
Sbjct: 56  CELEIHALGNAFYDLERFGLHVVASPRHADVLLVTGPVAKNMAEALKRTYDATPSPKWVV 115

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162
           + G CA  GG +  S +   G + IVPVD+ +PGCPPT
Sbjct: 116 AAGDCAINGGIFAGSSACAGGVEAIVPVDLRIPGCPPT 153


>gi|2127915|pir||D64364 formate hydrogenlyase, subunit 7 - Methanococcus jannaschii
          Length = 153

 Score =  100 bits (250), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 45/118 (38%), Positives = 75/118 (63%), Gaps = 1/118 (0%)

Query: 59  TFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMP 118
           T G   C +E++    PRYD+E++G     +PR++DV++V G +T + A  L+ +Y++ P
Sbjct: 23  TGGCNGCDIEIVACLAPRYDIEQYGIYVHNNPREADVLLVTGPVTLQWAERLKEIYEKTP 82

Query: 119 EPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKK 176
           EP+ V+++G+CA  GG +   + VV G D+++PVD  +PGCPP    +I  IL +  K
Sbjct: 83  EPKIVVAVGACALSGGIFKEGH-VVGGVDKVIPVDAKIPGCPPRPSEIIETILKVAPK 139


>gi|31580608|gb|AAP51027.1| EchC [Desulfovibrio gigas]
          Length = 147

 Score =  100 bits (250), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 44/112 (39%), Positives = 71/112 (63%), Gaps = 1/112 (0%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E +    P      FG     +P+ +D++IV+GT+ ++    L  +Y+QMP P+ V+
Sbjct: 29  CDIETLACLDPHLRRGTFGIVNVGNPKHADILIVSGTVNHRNKKVLANLYEQMPHPKVVV 88

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILL-LQK 175
           ++G+C   GG +  + +VV G D+++PVD YVPGCPP  EA+I G++L LQK
Sbjct: 89  AIGACGLSGGVFREAPNVVGGIDKVIPVDAYVPGCPPKPEAIIDGVVLGLQK 140


>gi|239616971|ref|YP_002940293.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Kosmotoga olearia
           TBF 19.5.1]
 gi|239505802|gb|ACR79289.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Kosmotoga olearia
           TBF 19.5.1]
          Length = 137

 Score =  100 bits (250), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 45/106 (42%), Positives = 67/106 (63%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E++    PRYDLERFG     S R +DV++V G    K++  + R+Y+Q P+P +VI
Sbjct: 25  CDIEILDMLTPRYDLERFGIKLVGSVRHADVLLVTGMGGCKVSERVIRIYNQAPKPVFVI 84

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGI 170
           ++G+C   G  +  SY+     DR VPVD+Y+PGCPP  E +I G+
Sbjct: 85  AVGTCPVAGATFKESYTRCGPLDRFVPVDLYIPGCPPKPETMIAGL 130


>gi|83592758|ref|YP_426510.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Rhodospirillum
           rubrum ATCC 11170]
 gi|1515468|gb|AAC45118.1| CooL [Rhodospirillum rubrum]
 gi|83575672|gb|ABC22223.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Rhodospirillum
           rubrum ATCC 11170]
          Length = 142

 Score =  100 bits (249), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 46/107 (42%), Positives = 71/107 (66%), Gaps = 1/107 (0%)

Query: 65  CAVEM-MQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYV 123
           C VE+   A +PRYD+ER G     SP+ +D+++V G LT ++   + RVY+++P+P+  
Sbjct: 25  CDVELATTACIPRYDVERLGCQYCGSPKHADIVLVTGPLTARVKDKVLRVYEEIPDPKVT 84

Query: 124 ISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGI 170
           +++G C   GG +  SYS+V   DR +PVD+ VPGCPP  +A+I GI
Sbjct: 85  VAIGVCPISGGVFRESYSIVGPIDRYLPVDVNVPGCPPRPQAIIEGI 131


>gi|294338744|emb|CAZ87076.1| putative NADH ubiquinone oxidoreductase domain, 20 kDa subunit
           [Thiomonas sp. 3As]
          Length = 172

 Score =  100 bits (249), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 47/107 (43%), Positives = 67/107 (62%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E+   S P Y++E  G    ASPR +D+++V G ++  M  ALRR YD MPEPR V+
Sbjct: 59  CELEINALSNPYYNIEGLGVHFVASPRHADLLLVTGPVSRHMELALRRTYDAMPEPRLVV 118

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171
           + G CA G G +   Y+V      ++PVD+ VPGCPP+  AL+ GI+
Sbjct: 119 AAGDCAAGCGVHSQGYAVCGRVAEVLPVDVTVPGCPPSPVALLQGIM 165


>gi|289191770|ref|YP_003457711.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanocaldococcus
           sp. FS406-22]
 gi|288938220|gb|ADC68975.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanocaldococcus
           sp. FS406-22]
          Length = 148

 Score =  100 bits (249), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 44/118 (37%), Positives = 75/118 (63%), Gaps = 1/118 (0%)

Query: 59  TFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMP 118
           T G   C +E++    PRYD+E++G     +PR++DV+++ G +T + A  L+ +Y++ P
Sbjct: 18  TGGCNGCDIEIVACLAPRYDIEQYGIYVHNNPREADVLLITGPVTLQWAERLKEIYEKTP 77

Query: 119 EPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKK 176
           EP+ V+++G+CA  GG +   + VV G D+++PVD  +PGCPP    +I  IL +  K
Sbjct: 78  EPKIVVAVGACALSGGIFKEGH-VVGGVDKVIPVDAKIPGCPPRPSEIIETILKVAPK 134


>gi|303243875|ref|ZP_07330215.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanothermococcus
           okinawensis IH1]
 gi|302485811|gb|EFL48735.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanothermococcus
           okinawensis IH1]
          Length = 251

 Score =  100 bits (249), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 46/115 (40%), Positives = 68/115 (59%)

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           G   C  ++   + P YDL RFG    ASPR +D ++V G +T  M  AL + Y+ +P P
Sbjct: 137 GCNACDADVNVLNTPVYDLSRFGIKFAASPRHADGLVVTGPITKNMELALMKTYNAIPSP 196

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175
           + VI++G+CA  GG +  +  VV G D+I+PVD+Y+PGCPP     +Y  +   K
Sbjct: 197 KCVIAVGACAISGGLFRENEEVVGGVDKILPVDLYIPGCPPHPFTNLYAFVKFFK 251


>gi|163785059|ref|ZP_02179780.1| hypothetical protein HG1285_04403 [Hydrogenivirga sp. 128-5-R1-1]
 gi|159879672|gb|EDP73455.1| hypothetical protein HG1285_04403 [Hydrogenivirga sp. 128-5-R1-1]
          Length = 171

 Score =  100 bits (248), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 44/115 (38%), Positives = 71/115 (61%), Gaps = 1/115 (0%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C  E+   S P YD+ERFG    ASP+ +D +++ G +T  M  A+ R Y+ +PEP++VI
Sbjct: 57  CEYEISALSNPYYDVERFGIKFVASPKHADAIMITGCMTRNMYKAVLRAYENVPEPKFVI 116

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL-LLQKKIR 178
           ++G C   GG +  SY+ + G    +PVD+++ GCPP    +I G+L L+++K  
Sbjct: 117 AVGDCVLDGGVFKGSYATIDGVQDKLPVDVWIKGCPPEPIDIISGVLKLIEEKFE 171


>gi|210631897|ref|ZP_03297109.1| hypothetical protein COLSTE_00999 [Collinsella stercoris DSM 13279]
 gi|210159822|gb|EEA90793.1| hypothetical protein COLSTE_00999 [Collinsella stercoris DSM 13279]
          Length = 228

 Score =  100 bits (248), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 44/119 (36%), Positives = 72/119 (60%), Gaps = 4/119 (3%)

Query: 57  WMTF--GLAC--CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRR 112
           W+    G +C  C +E++ + MP YD+ERFG     +P+ +D+ +V G++  +    +R 
Sbjct: 9   WLIHYDGSSCNGCDIEVLDSMMPLYDIERFGIINTGNPKHADIFLVTGSVNAQNIEVVRH 68

Query: 113 VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171
           +YDQM EP+ V++ G CA  GG +   Y+V+ G D+ +PVD+Y PGC    E +I  +L
Sbjct: 69  IYDQMLEPKVVVACGICACTGGVFRDCYNVIGGVDKAIPVDVYAPGCAVRPETIIDAVL 127


>gi|307353199|ref|YP_003894250.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanoplanus
           petrolearius DSM 11571]
 gi|307156432|gb|ADN35812.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanoplanus
           petrolearius DSM 11571]
          Length = 171

 Score =  100 bits (248), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 57/172 (33%), Positives = 94/172 (54%), Gaps = 9/172 (5%)

Query: 9   KIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCA-V 67
           K+I    +  +E  D+DF R  S +  +   + SV     + R+ ++  +  G    A +
Sbjct: 7   KLIQKPLTERIEVNDSDFERYGSMLKAE---INSV-----FKRSIAIREVDCGSDNAAEI 58

Query: 68  EMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMG 127
           E+   S P YD+ERFG    ASPR +DV+ V G +T+ M  AL++ YD  P P++V+++G
Sbjct: 59  EINNLSSPYYDVERFGVTFVASPRHADVLFVTGAVTHNMRYALKKTYDATPSPKFVVAIG 118

Query: 128 SCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
             A  GG +  SY++      +VPVD+ +PG PP    +I  +L L K+ ++
Sbjct: 119 DEACNGGIFKDSYAICGPVSSVVPVDLEIPGNPPEPVDMIKSLLALMKEAKK 170


>gi|220930729|ref|YP_002507638.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Clostridium
           cellulolyticum H10]
 gi|220001057|gb|ACL77658.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Clostridium
           cellulolyticum H10]
          Length = 149

 Score =  100 bits (248), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 39/107 (36%), Positives = 69/107 (64%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E +    P YD ER G     +P+ +D+++V G++  +    L+ +Y+QMP+P+ V+
Sbjct: 25  CDIETLACLTPMYDAERLGIINVGNPKHADILLVTGSVNKRNELVLKNIYNQMPDPKCVV 84

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171
           ++G+CA  GG +   Y+V+ G + ++PVD++VPGC    EA+I GI+
Sbjct: 85  AIGACACTGGIFKECYNVLGGVENVIPVDVFVPGCCARPEAIIDGIV 131


>gi|126465960|ref|YP_001041069.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Staphylothermus
           marinus F1]
 gi|126014783|gb|ABN70161.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Staphylothermus
           marinus F1]
          Length = 159

 Score =  100 bits (248), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 48/125 (38%), Positives = 77/125 (61%), Gaps = 10/125 (8%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E++ A  P +D+ERFG    ASPR +D++++ G +T K    +      +P PRYV+
Sbjct: 25  CDIEILDALTPYFDVERFGIKLVASPRHADLVLLTGPITLKTLPKVINALRAVPRPRYVM 84

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRI--------VPVD--IYVPGCPPTAEALIYGILLLQ 174
           ++G+CA GGG ++ SYSV+ G D +        + +D  +YVPGCP   EA+IYG+ LL 
Sbjct: 85  AIGACAVGGGIWYDSYSVIGGVDELKKILEEYGIEIDKIVYVPGCPARPEAIIYGVALLL 144

Query: 175 KKIRR 179
             +++
Sbjct: 145 GLVKQ 149


>gi|326202291|ref|ZP_08192160.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Clostridium
           papyrosolvens DSM 2782]
 gi|325987409|gb|EGD48236.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Clostridium
           papyrosolvens DSM 2782]
          Length = 149

 Score = 99.8 bits (247), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 39/107 (36%), Positives = 69/107 (64%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E +    P YD ER G     +P+ +D+++V G++  +    L+ +Y+QMP+P+ V+
Sbjct: 25  CDIETLACLTPLYDAERLGIINVGNPKHADILLVTGSVNKRNEIVLKNIYNQMPDPKCVV 84

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171
           ++G+CA  GG +   Y+V+ G + ++PVD++VPGC    EA+I GI+
Sbjct: 85  AIGACACTGGIFRECYNVLGGVENVIPVDVFVPGCCARPEAIIDGIV 131


>gi|154150665|ref|YP_001404283.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Candidatus
           Methanoregula boonei 6A8]
 gi|153999217|gb|ABS55640.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Methanoregula
           boonei 6A8]
          Length = 172

 Score = 99.8 bits (247), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 46/109 (42%), Positives = 70/109 (64%)

Query: 67  VEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISM 126
           +E+   S   YD+ERFG +  ASPR +DV++V G +T  MA A ++ YD MP P++V+++
Sbjct: 58  IEINNLSNAYYDVERFGISFVASPRHADVLLVTGAITCNMAIAAQKTYDAMPSPKFVVAV 117

Query: 127 GSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175
           G  A  GG Y  +Y+V+ G D I PVD+ +PG PP    ++ G+L L +
Sbjct: 118 GDDACDGGIYKGTYAVLGGADAIFPVDLKIPGNPPAPIQILTGLLALMR 166


>gi|295105899|emb|CBL03442.1| ech hydrogenase subunit C [Gordonibacter pamelaeae 7-10-1-b]
          Length = 147

 Score = 99.8 bits (247), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 43/118 (36%), Positives = 73/118 (61%), Gaps = 4/118 (3%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E++ A  P YD+ERFG     +P+ +D+ +V G++  +    ++ +Y+QM EP+ VI
Sbjct: 21  CDIEVLAALCPGYDVERFGIINTGNPKHADIFLVTGSVNEQNIKVVQEIYNQMVEPKVVI 80

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALI----YGILLLQKKIR 178
           + G CA   G +H  Y+V+ G D+ +PVD+Y PGC    EA+I     G+ +L++K +
Sbjct: 81  ACGICACSAGIFHDCYNVIGGVDQAIPVDVYAPGCAVRPEAIIDAVVQGLGILEEKSK 138


>gi|240102300|ref|YP_002958608.1| formate hydrogenlyase I subunit H (Mhy1H) [Thermococcus
           gammatolerans EJ3]
 gi|239909853|gb|ACS32744.1| formate hydrogenlyase I subunit H (Mhy1H) [Thermococcus
           gammatolerans EJ3]
          Length = 277

 Score = 99.8 bits (247), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 50/132 (37%), Positives = 81/132 (61%), Gaps = 18/132 (13%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQM-PEPRYV 123
           C +E++    P YDLER G     +PR +D + + G LT +   AL++ Y+ M P+PR V
Sbjct: 22  CDIEVLDVLSPYYDLERLGVKVVPNPRHADALFITGPLTRQTRIALKKAYEAMPPKPRIV 81

Query: 124 ISMGSCANGGGYYHYSYSVV-----RGCDR--------IVPVDIYVPGCPPTAEALIYGI 170
           +++G+CA+ GG ++ SY++      RG DR        IVP+D+Y+PGCPP+ E ++YG+
Sbjct: 82  VAVGTCASSGGIFYNSYALYNTSPQRGRDRLRSGGPEMIVPIDMYIPGCPPSPEEILYGV 141

Query: 171 LLL----QKKIR 178
             L    +KK++
Sbjct: 142 AQLLGIKEKKMK 153


>gi|220905144|ref|YP_002480456.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
 gi|219869443|gb|ACL49778.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
          Length = 149

 Score = 99.4 bits (246), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 44/109 (40%), Positives = 71/109 (65%), Gaps = 1/109 (0%)

Query: 65  CAVEM-MQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYV 123
           C VE+   A +PRYD+ER G     SPR +D++++ G LT ++   + RV+D++PEP+  
Sbjct: 28  CDVELATTACIPRYDVERLGCRYCGSPRHADIVLITGPLTTRVRDRVLRVWDEIPEPKVT 87

Query: 124 ISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILL 172
           +++G C   GG +   YS+    DR +PVD+ VPGCPP  +A++ G++L
Sbjct: 88  VAVGICPISGGVFREGYSIEGPIDRYLPVDVNVPGCPPRPQAILEGVVL 136


>gi|296134448|ref|YP_003641695.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Thermincola sp. JR]
 gi|296033026|gb|ADG83794.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Thermincola potens
           JR]
          Length = 143

 Score = 99.4 bits (246), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 46/108 (42%), Positives = 71/108 (65%), Gaps = 1/108 (0%)

Query: 65  CAVEMMQASM-PRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYV 123
           C VE+   ++ PRYD+ER G     SP+ +D+++V G LT K+   + RVYD++P+P+ V
Sbjct: 26  CDVELATTALIPRYDVERLGCKYCGSPKHADIVLVTGPLTAKVKDKVLRVYDEIPDPKVV 85

Query: 124 ISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171
           +++G C   GG +  SY+V    D  +PVD+ VPGCPP  +A+I GI+
Sbjct: 86  VAVGICPVSGGVFRDSYAVHGPVDSYIPVDVNVPGCPPRPQAIIDGIV 133


>gi|218888275|ref|YP_002437596.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfovibrio
           vulgaris str. 'Miyazaki F']
 gi|218759229|gb|ACL10128.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfovibrio
           vulgaris str. 'Miyazaki F']
          Length = 146

 Score = 99.4 bits (246), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 44/108 (40%), Positives = 70/108 (64%), Gaps = 1/108 (0%)

Query: 65  CAVEM-MQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYV 123
           C VE+   A +PRYD+ER G     SPR +D++++ G LT ++   + RV+D++PEP+  
Sbjct: 25  CDVELATTACIPRYDVERLGCKYCGSPRHADIVLITGPLTARVKDKVLRVWDEIPEPKVT 84

Query: 124 ISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171
           +++G C   GG +   YS+    DR +PVD+ VPGCPP  +A+I G++
Sbjct: 85  VAVGICPVSGGVFRDGYSIEGPIDRYIPVDVNVPGCPPRPQAIIEGVI 132


>gi|226327309|ref|ZP_03802827.1| hypothetical protein PROPEN_01176 [Proteus penneri ATCC 35198]
 gi|225204527|gb|EEG86881.1| hypothetical protein PROPEN_01176 [Proteus penneri ATCC 35198]
          Length = 172

 Score = 99.4 bits (246), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 42/101 (41%), Positives = 62/101 (61%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E+  A  P +D ERFG    ASPR +D+++  G +T +M     R Y+  P+P+  I
Sbjct: 50  CEIEIFSAITPVFDAERFGIKVVASPRHADILLFTGAVTRQMRVPALRAYESAPDPKICI 109

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEA 165
           S G+C  GGG +H  Y V  G + IVP+D+++PGCPP A +
Sbjct: 110 SYGACGCGGGIFHDLYCVWGGSESIVPIDVWIPGCPPNASS 150


>gi|14521670|ref|NP_127146.1| hydrogenase-4 component i [Pyrococcus abyssi GE5]
 gi|5458889|emb|CAB50376.1| Hydrogenase 4, component I or formate hydrogen lyase, subunit 7
           [Pyrococcus abyssi GE5]
          Length = 271

 Score = 99.4 bits (246), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 47/123 (38%), Positives = 76/123 (61%), Gaps = 14/123 (11%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQM-PEPRYV 123
           C +E++    P YDLER G     +PR +D +++ G LT +   A+++ Y+ M P+PR V
Sbjct: 20  CDIEVLDVLTPYYDLERLGIKVVPNPRHADALLITGPLTRQTRMAIKKAYEAMPPKPRIV 79

Query: 124 ISMGSCANGGGYYHYSYSVV-----RGCDR--------IVPVDIYVPGCPPTAEALIYGI 170
           +++G+CA  GG ++ SY++      RG DR        +VPVD+Y+PGCPP+ E ++YG+
Sbjct: 80  VAIGTCACSGGIFYNSYALYNTSPERGRDRLRSGGIEMVVPVDMYIPGCPPSPEEILYGL 139

Query: 171 LLL 173
             L
Sbjct: 140 AQL 142


>gi|242399881|ref|YP_002995306.1| Membrane-bound NADP+-reducing complex MBX, subunit MbxJ
           (dehydrogenase subunit) [Thermococcus sibiricus MM 739]
 gi|242266275|gb|ACS90957.1| Membrane-bound NADP+-reducing complex MBX, subunit MbxJ
           (dehydrogenase subunit) [Thermococcus sibiricus MM 739]
          Length = 193

 Score = 99.4 bits (246), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 46/127 (36%), Positives = 73/127 (57%)

Query: 44  DQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLT 103
           + L+ +AR  S+  + F   C  +EM      RYDLERFG  P  +PR +D+ ++ G +T
Sbjct: 8   EPLINFARKRSMWIVAFCTGCGGIEMPPLMTSRYDLERFGMMPNPAPRMADLFLITGYVT 67

Query: 104 NKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTA 163
            K    +   Y+  P+P+YV++ GSC   GG Y   Y+ ++  D+ +PVD+ + GC P  
Sbjct: 68  PKTLKRIIITYEMQPDPKYVLAHGSCPLNGGIYWDGYNAIKHLDKYLPVDVAIAGCMPRP 127

Query: 164 EALIYGI 170
           EA++ GI
Sbjct: 128 EAVMDGI 134


>gi|53804774|ref|YP_113607.1| hydrogenase subunit [Methylococcus capsulatus str. Bath]
 gi|53758535|gb|AAU92826.1| hydrogenase subunit [Methylococcus capsulatus str. Bath]
          Length = 169

 Score = 99.0 bits (245), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 43/109 (39%), Positives = 69/109 (63%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E+     P YD+ER+G    ASPR +DV++V G ++  M +AL+  ++  PEP++V+
Sbjct: 58  CELEIAALGNPFYDIERYGVHFVASPRHADVLMVTGPVSRHMQAALQATWEATPEPKWVV 117

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLL 173
           ++GSCA  GG +  +Y+       ++PVD  +PGCPPT   L+ G+L L
Sbjct: 118 AVGSCAADGGEFGVNYASCGAVGNVLPVDAVIPGCPPTPTDLVRGLLSL 166


>gi|301167470|emb|CBW27053.1| putative NADH-quinone oxidoreductase chain B [Bacteriovorax marinus
           SJ]
          Length = 172

 Score = 99.0 bits (245), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 43/139 (30%), Positives = 84/139 (60%), Gaps = 2/139 (1%)

Query: 41  TSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAG 100
           T +++   W  T S +  TF  ACC+ E       +Y  + F F  R   + SD++I++G
Sbjct: 29  TFIERFHNWVNTHSTVPFTFATACCSSEYYSIFDDQYPEDNF-FPERVEAQNSDLLIISG 87

Query: 101 TLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCP 160
           ++  K    L+ +Y +MP+ ++V+ +G+C   GG +  S+++V    + +PVDI++PGCP
Sbjct: 88  SVNLKTYPLLKDIYKEMPKDKWVVVIGACPMSGGPFS-SFNIVPDISKDIPVDIFIPGCP 146

Query: 161 PTAEALIYGILLLQKKIRR 179
           P+ + + +G+ LL++++R+
Sbjct: 147 PSPKEIAHGMSLLKERMRK 165


>gi|289549193|ref|YP_003474181.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Thermocrinis albus
           DSM 14484]
 gi|289182810|gb|ADC90054.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Thermocrinis albus
           DSM 14484]
          Length = 163

 Score = 99.0 bits (245), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 44/115 (38%), Positives = 67/115 (58%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C VE+     P Y +E FG    ASP+ +DV++V G +T  M +AL++ YD  P P++VI
Sbjct: 44  CEVEVAALGNPHYSIESFGIRFVASPKHADVLLVTGCVTRNMLTALKKAYDNTPSPKWVI 103

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           ++G C     ++  SYSV     + +PV ++VPGCPP    +I G + L   I+R
Sbjct: 104 TVGDCTESCPFFKDSYSVEGPVSKHIPVHLHVPGCPPEPSEIISGFIRLMNLIQR 158


>gi|237757076|ref|ZP_04585519.1| NADH-quinone oxidoreductase, chain 6 [Sulfurihydrogenibium
           yellowstonense SS-5]
 gi|237690765|gb|EEP59930.1| NADH-quinone oxidoreductase, chain 6 [Sulfurihydrogenibium
           yellowstonense SS-5]
          Length = 97

 Score = 98.6 bits (244), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 42/70 (60%), Positives = 59/70 (84%), Gaps = 1/70 (1%)

Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164
           K+A  LR +Y+QMP+P++VISMG CA+GGG +  +YS ++G DRI+PVD+Y+PGCPPT +
Sbjct: 1   KVAPMLRLIYEQMPDPKWVISMGGCASGGGPFP-TYSTLQGVDRIIPVDVYIPGCPPTPQ 59

Query: 165 ALIYGILLLQ 174
           AL++GIL LQ
Sbjct: 60  ALLWGILELQ 69


>gi|296242761|ref|YP_003650248.1| NADH dehydrogenase 30 kDa subunit [Thermosphaera aggregans DSM
           11486]
 gi|296095345|gb|ADG91296.1| NADH dehydrogenase (ubiquinone) 30 kDa subunit [Thermosphaera
           aggregans DSM 11486]
          Length = 339

 Score = 98.6 bits (244), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 52/135 (38%), Positives = 75/135 (55%)

Query: 43  VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL 102
           +D+LV WAR+ S+  + +  AC AVE     M   D ER+G+ P  SPRQSD+ +  G L
Sbjct: 4   LDKLVRWARSRSIWMIHYCSACGAVEFPPLVMSPLDWERYGYMPAPSPRQSDLYVGMGYL 63

Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162
           T K       +Y Q+PEPR+V +  +C   GG Y  SY+  +  D  V V+ +VPGC P 
Sbjct: 64  TKKTVKLFLNMYRQVPEPRFVAAGCNCTATGGLYWDSYATYKRLDEFVEVEGWVPGCMPM 123

Query: 163 AEALIYGILLLQKKI 177
            +     +  L++KI
Sbjct: 124 PDDYFSLLEHLRRKI 138


>gi|312113082|ref|YP_004010678.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Rhodomicrobium
           vannielii ATCC 17100]
 gi|311218211|gb|ADP69579.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Rhodomicrobium
           vannielii ATCC 17100]
          Length = 175

 Score = 98.6 bits (244), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 44/109 (40%), Positives = 65/109 (59%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E+     P YD+ERFG    ASPR +DV++V G ++  M   L R Y   P+P++V+
Sbjct: 58  CELEIHALGNPVYDVERFGLKFVASPRHADVLLVTGAVSWNMREGLERTYAATPDPKWVV 117

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLL 173
           + G CA G G +  S +      +I+PVD+ +PGCPPT   L+ G+L L
Sbjct: 118 AAGDCAAGCGVFAESRACAGAVAKIIPVDLVIPGCPPTPTDLLKGLLAL 166


>gi|258593559|emb|CBE69900.1| HycG protein [NC10 bacterium 'Dutch sediment']
          Length = 172

 Score = 98.6 bits (244), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 47/107 (43%), Positives = 65/107 (60%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E+   + P YDLERFG    ASPR +D ++V G +T  MA  L+R YD  P+P+ V+
Sbjct: 59  CELEIGALNNPYYDLERFGMHFVASPRHADCLLVTGPVTRNMADPLKRTYDATPDPKIVV 118

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171
           ++G CA   G +   Y VV     IVPVD+ V GCPP+   ++ GIL
Sbjct: 119 AVGDCARDCGIFAGGYGVVGPVSAIVPVDVVVGGCPPSPSMILAGIL 165


>gi|257791323|ref|YP_003181929.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Eggerthella lenta
           DSM 2243]
 gi|317490460|ref|ZP_07948942.1| NADH ubiquinone oxidoreductase [Eggerthella sp. 1_3_56FAA]
 gi|325831504|ref|ZP_08164758.1| NADH ubiquinone oxidoreductase, 20 Kd subunit [Eggerthella sp.
           HGA1]
 gi|257475220|gb|ACV55540.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Eggerthella lenta
           DSM 2243]
 gi|316910453|gb|EFV32080.1| NADH ubiquinone oxidoreductase [Eggerthella sp. 1_3_56FAA]
 gi|325486758|gb|EGC89206.1| NADH ubiquinone oxidoreductase, 20 Kd subunit [Eggerthella sp.
           HGA1]
          Length = 147

 Score = 98.6 bits (244), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 42/118 (35%), Positives = 73/118 (61%), Gaps = 4/118 (3%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E++ A  P +D+ERFG     +P+ +D+ +V G++  +    ++ +Y+QM EP+ VI
Sbjct: 21  CDIEVLAALCPGFDVERFGIINTGNPKHADIFLVTGSVNEQNIGVVQEIYNQMVEPKVVI 80

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALI----YGILLLQKKIR 178
           + G CA   G +H  Y+V+ G D+ +PVD+Y PGC    EA+I     G+ +L++K +
Sbjct: 81  ACGICACSAGIFHDCYNVIGGVDQAIPVDVYAPGCAVRPEAIIDAVVQGLGILEEKSK 138


>gi|78043938|ref|YP_360650.1| carbon monoxide-induced hydrogenase subunit CooL [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|77996053|gb|ABB14952.1| carbon monoxide-induced hydrogenase, CooL subunit [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 143

 Score = 98.6 bits (244), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 42/108 (38%), Positives = 70/108 (64%), Gaps = 1/108 (0%)

Query: 65  CAVEM-MQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYV 123
           C VE+   A +PRYD+ER G     SP+ +D++++ G LT ++   + R+Y+++PEP+  
Sbjct: 26  CDVELATTACIPRYDVERLGCKYCGSPKHADIVLITGPLTARVKEKVLRLYEEIPEPKVT 85

Query: 124 ISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171
           +++G C   GG +  SY++    D  +PVD+ VPGCPP  +A+I GI+
Sbjct: 86  VAIGVCPISGGVFRDSYAITGPIDNFIPVDVNVPGCPPRPQAIIDGII 133


>gi|254173148|ref|ZP_04879821.1| hydrogenase-4 component i [Thermococcus sp. AM4]
 gi|214032557|gb|EEB73386.1| hydrogenase-4 component i [Thermococcus sp. AM4]
          Length = 276

 Score = 98.2 bits (243), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 49/132 (37%), Positives = 80/132 (60%), Gaps = 18/132 (13%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQM-PEPRYV 123
           C +E++    P YDLER G     +PR +D + + G LT +    L++ Y+ M P+PR V
Sbjct: 21  CDIEVLDVLSPYYDLERLGIKVVPNPRHADALFITGPLTRQTRIMLKKAYEAMPPKPRIV 80

Query: 124 ISMGSCANGGGYYHYSYSVV-----RGCDR--------IVPVDIYVPGCPPTAEALIYGI 170
           +++G+CA+ GG ++ SY++      RG DR        IVP+D+Y+PGCPP+ E ++YG+
Sbjct: 81  VAIGTCASSGGIFYNSYALYNTSPQRGRDRLRSGGPEMIVPIDMYIPGCPPSPEEILYGV 140

Query: 171 LLL----QKKIR 178
             L    +KK++
Sbjct: 141 AQLLGIKEKKMK 152


>gi|255525491|ref|ZP_05392428.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Clostridium
           carboxidivorans P7]
 gi|296188576|ref|ZP_06856964.1| 4Fe-4S binding domain protein [Clostridium carboxidivorans P7]
 gi|255510856|gb|EET87159.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Clostridium
           carboxidivorans P7]
 gi|296046840|gb|EFG86286.1| 4Fe-4S binding domain protein [Clostridium carboxidivorans P7]
          Length = 242

 Score = 98.2 bits (243), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 44/113 (38%), Positives = 70/113 (61%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E+       YDL R+G    ASPR +D ++V G +T  M  AL + YD + +P+ VI
Sbjct: 127 CMMEVSNTQNTYYDLSRYGIKFAASPRHADGIVVTGPVTLNMKEALIKTYDAISDPKIVI 186

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
           ++GSCA  GG +   YSV    + I+ V++ +PGCPP+ +A++YG+L +  K+
Sbjct: 187 AVGSCAYSGGIFKDGYSVCEDLNEILKVNLVIPGCPPSPQAILYGMLKIINKL 239


>gi|296109961|ref|YP_003616910.1| hypothetical protein Metin_1296 [Methanocaldococcus infernus ME]
 gi|295434775|gb|ADG13946.1| hypothetical protein Metin_1296 [Methanocaldococcus infernus ME]
          Length = 146

 Score = 98.2 bits (243), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 50/141 (35%), Positives = 83/141 (58%), Gaps = 4/141 (2%)

Query: 48  TWARTGSL---MWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTN 104
           T+ R  SL   +  T G   C VE++    PRYDLE++G     +PR++D+++V+G +T 
Sbjct: 3   TFFRKRSLHLCLINTGGCNGCDVEVLSCLAPRYDLEQYGIYFHNNPREADILVVSGPVTL 62

Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164
           +    ++ +Y+++PEP+ VI++G+CA  GG +   ++  +G   I+PVD  VPGCPP   
Sbjct: 63  QWKERIKELYEKVPEPKIVIALGACALSGGIFKEGHT-CKGVLNILPVDAKVPGCPPKPA 121

Query: 165 ALIYGILLLQKKIRRVGNVKC 185
            +I  IL +  K+      KC
Sbjct: 122 EIIKAILKVAPKLIAEREKKC 142


>gi|325294933|ref|YP_004281447.1| NADH dehydrogenase (quinone) [Desulfurobacterium thermolithotrophum
           DSM 11699]
 gi|325065381|gb|ADY73388.1| NADH dehydrogenase (quinone) [Desulfurobacterium thermolithotrophum
           DSM 11699]
          Length = 182

 Score = 98.2 bits (243), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 51/126 (40%), Positives = 79/126 (62%), Gaps = 4/126 (3%)

Query: 55  LMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVY 114
           L + T     C VE++    P+YD+ERFG   R +P+QSD+++V G +T +    L R+Y
Sbjct: 14  LHYNTGSCNGCDVEILACLAPKYDIERFGILNRGNPKQSDILLVTGPVTKRARERLIRLY 73

Query: 115 DQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL--- 171
            +MPEP+ V+++G CA  GG +   Y+V  G D+ +PVD+YVPGC    E +I G++   
Sbjct: 74  MEMPEPKVVVAVGVCACTGGVFRGMYNVENGVDKFIPVDVYVPGCAARPENIIDGVVRAL 133

Query: 172 -LLQKK 176
            +L+KK
Sbjct: 134 EILEKK 139


>gi|224099657|ref|XP_002334455.1| predicted protein [Populus trichocarpa]
 gi|222872368|gb|EEF09499.1| predicted protein [Populus trichocarpa]
          Length = 97

 Score = 97.8 bits (242), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 42/93 (45%), Positives = 64/93 (68%)

Query: 41  TSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAG 100
           T+ + L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPRQ+D+++ AG
Sbjct: 5   TTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAG 64

Query: 101 TLTNKMASALRRVYDQMPEPRYVISMGSCANGG 133
           T+T KMA +L R+Y+QMPE +YVI+MG+C   G
Sbjct: 65  TVTMKMAPSLVRLYEQMPEQKYVIAMGACTITG 97


>gi|261402604|ref|YP_003246828.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanocaldococcus
           vulcanius M7]
 gi|261369597|gb|ACX72346.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanocaldococcus
           vulcanius M7]
          Length = 152

 Score = 97.8 bits (242), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 42/118 (35%), Positives = 74/118 (62%), Gaps = 1/118 (0%)

Query: 59  TFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMP 118
           T G   C +E++    PRYD+E++G     +PR++DV+++ G +T + A  L+ +Y++ P
Sbjct: 18  TGGCNGCDIEIVSCLSPRYDIEQYGIYVHNNPREADVLLITGPVTLQWAERLKEIYEKTP 77

Query: 119 EPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKK 176
           EP+ V+++G+CA  GG +   + V+ G  +++PVD  +PGCPP    +I  IL +  K
Sbjct: 78  EPKVVVAVGACALSGGIFKEGH-VIGGVHKVIPVDAKIPGCPPRPSEIIETILKVAPK 134


>gi|270308816|ref|YP_003330874.1| hydrogenase, HycG subunit [Dehalococcoides sp. VS]
 gi|270154708|gb|ACZ62546.1| hydrogenase, HycG subunit [Dehalococcoides sp. VS]
          Length = 171

 Score = 97.8 bits (242), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 45/113 (39%), Positives = 70/113 (61%)

Query: 67  VEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISM 126
           +E+   S P YD+ERFG +  ASPR +D++IV G ++  MA A+R+ +D MP P+ VI++
Sbjct: 58  IELNNLSNPYYDIERFGISFVASPRHADILIVTGAVSQNMAIAVRKTFDAMPSPKLVIAL 117

Query: 127 GSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           G  A G G     Y V+ G D+I+ VD+ +PG PP    +I  +L L + + +
Sbjct: 118 GDDACGNGIVCSGYGVLGGVDKILLVDLKIPGNPPEPIQIITALLGLMRSLGK 170


>gi|90422453|ref|YP_530823.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Rhodopseudomonas
           palustris BisB18]
 gi|90104467|gb|ABD86504.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Rhodopseudomonas
           palustris BisB18]
          Length = 174

 Score = 97.4 bits (241), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 42/97 (43%), Positives = 63/97 (64%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E+   S   YD+ERFG    ASPR +DV++V G +T  M  AL+  Y+  P P++V+
Sbjct: 58  CELEIHALSNAYYDVERFGIRFVASPRHADVLLVTGPVTKNMRDALKATYEATPSPKWVV 117

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP 161
           ++G CA  GG +  SY+V  G   ++PVD+++PGCPP
Sbjct: 118 ALGDCAKDGGCFAASYAVEGGVSAVIPVDLHIPGCPP 154


>gi|139437055|ref|ZP_01771215.1| Hypothetical protein COLAER_00190 [Collinsella aerofaciens ATCC
           25986]
 gi|133776702|gb|EBA40522.1| Hypothetical protein COLAER_00190 [Collinsella aerofaciens ATCC
           25986]
          Length = 260

 Score = 97.4 bits (241), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 45/122 (36%), Positives = 71/122 (58%), Gaps = 4/122 (3%)

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           G   C +E+  +  P +D+ERFG     SPR +DV++  G +T  M     R ++  P+P
Sbjct: 48  GCNGCEIEIFGSITPVFDVERFGIKVVPSPRHADVLLYTGAVTRAMRMPALRAFEAAPDP 107

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176
           + V+S G+C   GG ++ +Y V  G D+I+PVD+Y+PGCPP+    +YG      LL +K
Sbjct: 108 KIVVSYGACGCTGGIFYDNYCVWGGTDKILPVDVYIPGCPPSPAQTVYGFAMALGLLDQK 167

Query: 177 IR 178
           + 
Sbjct: 168 LH 169


>gi|303325626|ref|ZP_07356069.1| carbon monoxide-induced hydrogenase, CooL subunit [Desulfovibrio
           sp. 3_1_syn3]
 gi|302863542|gb|EFL86473.1| carbon monoxide-induced hydrogenase, CooL subunit [Desulfovibrio
           sp. 3_1_syn3]
          Length = 149

 Score = 97.1 bits (240), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 43/109 (39%), Positives = 70/109 (64%), Gaps = 1/109 (0%)

Query: 65  CAVEM-MQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYV 123
           C VE+   A +PRYD+ER G     SPR +D++++ G LT ++   + RV+ ++PEP+  
Sbjct: 28  CDVELATTACIPRYDVERLGCKYCGSPRHADIVLITGPLTTRVRDRVLRVWHEIPEPKVT 87

Query: 124 ISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILL 172
           +++G C   GG +   YS+    DR +PVD+ VPGCPP  +A++ G++L
Sbjct: 88  VAVGICPISGGVFREGYSIEGPIDRYLPVDVNVPGCPPRPQAILEGVVL 136


>gi|90425976|ref|YP_534346.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Rhodopseudomonas
           palustris BisB18]
 gi|90107990|gb|ABD90027.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Rhodopseudomonas
           palustris BisB18]
          Length = 144

 Score = 97.1 bits (240), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 43/109 (39%), Positives = 71/109 (65%), Gaps = 1/109 (0%)

Query: 65  CAVEM-MQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYV 123
           C VE+   A +PRYD+ER G     SP+ +D++++ G LT ++   + RV+D++P+P+  
Sbjct: 27  CDVELATTACIPRYDVERLGCQYCGSPKHADIVLITGPLTARVKDRVLRVFDEIPDPKVT 86

Query: 124 ISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILL 172
           +++G C   GG +  SY++    DR +PVD+ VPGCPP  +A+I GI +
Sbjct: 87  VAIGICPISGGVFRESYAIEGPIDRYLPVDVNVPGCPPRPQAIIEGIAM 135


>gi|157954631|gb|ABW05548.1| formate hydrogenlyase subunit H [Thermococcus litoralis DSM 5473]
          Length = 256

 Score = 97.1 bits (240), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 48/127 (37%), Positives = 76/127 (59%), Gaps = 16/127 (12%)

Query: 63  AC--CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQM-PE 119
           AC  C +E++    P YD+ER G    ++PR +  ++V G LT +   + +R Y+ M P+
Sbjct: 15  ACNGCDIEILDVLTPYYDVERLGVKLVSTPRHAHALLVTGPLTRQSYYSAKRAYEAMPPK 74

Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRI-------------VPVDIYVPGCPPTAEAL 166
           PR VI++G+CA  GG ++ SY+V R  +R+             +PVD+Y+PGCPP  E +
Sbjct: 75  PRIVIAIGTCACSGGIFYNSYAVRRESERLGLEYPRAGGTSEFLPVDVYIPGCPPRPEEI 134

Query: 167 IYGILLL 173
           +YG+ LL
Sbjct: 135 LYGLALL 141


>gi|147920954|ref|YP_685238.1| [NiFe]-hydrogenase, small subunit (EchC-like) [uncultured
           methanogenic archaeon RC-I]
 gi|110620634|emb|CAJ35912.1| [NiFe]-hydrogenase, small subunit (EchC-like) [uncultured
           methanogenic archaeon RC-I]
          Length = 135

 Score = 96.7 bits (239), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 47/113 (41%), Positives = 69/113 (61%), Gaps = 2/113 (1%)

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           G   C +E++ +  PRYDLER G     SPR +DV++V G +       L RVY Q PEP
Sbjct: 17  GCVGCDIELVASMGPRYDLERLGVRLVPSPRYADVLLVTGPVPLHTKPFLERVYAQTPEP 76

Query: 121 RYVISMGSCANGGGYY--HYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171
           + VI++G+C    G +    +YS+    D+I+PVD+ +PGCPP  EA++ GI+
Sbjct: 77  KRVIAIGACGCSCGVFIDDENYSIAGPVDKIIPVDVKIPGCPPKPEAIMEGII 129


>gi|256827153|ref|YP_003151112.1| ech hydrogenase subunit C [Cryptobacterium curtum DSM 15641]
 gi|256583296|gb|ACU94430.1| ech hydrogenase subunit C [Cryptobacterium curtum DSM 15641]
          Length = 181

 Score = 96.3 bits (238), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 41/116 (35%), Positives = 72/116 (62%), Gaps = 4/116 (3%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E++ A  P +D ERFG     +P+ +D+++V G++  +    ++ +Y+QM EP+ V+
Sbjct: 21  CDIEVLAALCPGFDAERFGVINTGNPKHADILLVTGSVNERNIKVVQELYNQMIEPKAVV 80

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176
           + G CA  GG +H  Y+V+ G +  VPVD+Y PGC    EA+I  ++    +L++K
Sbjct: 81  ACGCCACTGGVFHDCYNVIGGVENAVPVDVYAPGCAIRPEAIIDAVVEAVGILEEK 136


>gi|121534188|ref|ZP_01666013.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Thermosinus
           carboxydivorans Nor1]
 gi|121307291|gb|EAX48208.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Thermosinus
           carboxydivorans Nor1]
          Length = 143

 Score = 95.9 bits (237), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 41/108 (37%), Positives = 70/108 (64%), Gaps = 1/108 (0%)

Query: 65  CAVEM-MQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYV 123
           C VE+   A +PRYD+ER G     SP+ +D++++ G LT ++   + R+Y+++P+P+  
Sbjct: 26  CDVELATTACIPRYDVERLGCKYCGSPKHADIVLITGPLTVRVKEKVLRLYEEIPDPKVT 85

Query: 124 ISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171
           +++G C   GG +  SY++    D  +PVD+ VPGCPP  +A+I GI+
Sbjct: 86  VAIGVCPISGGVFRDSYAIAGPIDNFIPVDVNVPGCPPRPQAIIDGII 133


>gi|317126126|ref|YP_004100238.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Intrasporangium
           calvum DSM 43043]
 gi|315590214|gb|ADU49511.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Intrasporangium
           calvum DSM 43043]
          Length = 157

 Score = 95.5 bits (236), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 43/103 (41%), Positives = 64/103 (62%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E++ A  P YDLER+G    ASPR +DV++V G +T  MA  LR+ Y+ MP P+ V+
Sbjct: 46  CELEIVSAFGPVYDLERYGVRLVASPRHADVLLVTGPVTRNMADPLRKAYEAMPAPKLVV 105

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALI 167
           ++G CA   G +  +Y V      ++PVD  + GCPP+ E +I
Sbjct: 106 ALGDCARNCGIFAGAYGVFGAVSDVIPVDREISGCPPSPEEII 148


>gi|78223793|ref|YP_385540.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Geobacter
           metallireducens GS-15]
 gi|78195048|gb|ABB32815.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Geobacter
           metallireducens GS-15]
          Length = 244

 Score = 95.5 bits (236), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 48/118 (40%), Positives = 68/118 (57%)

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           G   C  +    S   +DL RFG    ASPR +D + V G +T  MA AL   Y+ +P+P
Sbjct: 126 GCNACEADTNVLSTIGWDLGRFGIQFVASPRHADGLWVTGPVTEHMAKALLTTYEAIPDP 185

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           + V++ G+CA  GG Y  +  V  G D IVPVD+Y+PGCPP    ++ G+L +  KI+
Sbjct: 186 KIVVACGACAINGGPYIDTPQVCNGVDSIVPVDLYIPGCPPHPATILDGLLRILNKIK 243


>gi|120602015|ref|YP_966415.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Desulfovibrio
           vulgaris DP4]
 gi|120562244|gb|ABM27988.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Desulfovibrio
           vulgaris DP4]
          Length = 144

 Score = 95.1 bits (235), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 42/108 (38%), Positives = 68/108 (62%), Gaps = 1/108 (0%)

Query: 65  CAVEM-MQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYV 123
           C VE+   A +PRYD+ER G     SPR +D++++ G LT ++   + RV+D++P P+  
Sbjct: 25  CDVELATTACIPRYDVERLGCKYCGSPRHADIVLITGPLTARVKDKVLRVWDEIPAPKIT 84

Query: 124 ISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171
           +++G C   GG +   Y +    DR +P+DI VPGCPP  +A+I G++
Sbjct: 85  VAVGICPVSGGVFRDGYPIEGPLDRYIPIDINVPGCPPRPQAIIEGVV 132


>gi|139439383|ref|ZP_01772824.1| Hypothetical protein COLAER_01843 [Collinsella aerofaciens ATCC
           25986]
 gi|133775162|gb|EBA38982.1| Hypothetical protein COLAER_01843 [Collinsella aerofaciens ATCC
           25986]
          Length = 195

 Score = 95.1 bits (235), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 43/123 (34%), Positives = 73/123 (59%), Gaps = 6/123 (4%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E++ +  P +D ERFG     +P+ +D+ +V G++  +    +R++Y+QM EP+ V+
Sbjct: 22  CDIEVLASLTPLFDAERFGVVNTGNPKHADIFLVTGSVNAQNLPVVRQIYNQMLEPKCVV 81

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALI------YGILLLQKKIR 178
           + G CA  GG +  +Y+V+ G DR +PVD+Y PGC    E +I       GIL  ++ + 
Sbjct: 82  ACGICACSGGVFRDAYNVIGGVDRAIPVDVYAPGCAIRPETVIDAIVEACGILDQKEAVM 141

Query: 179 RVG 181
           R G
Sbjct: 142 RAG 144


>gi|46580693|ref|YP_011501.1| hydrogenase subunit CooL [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|46450112|gb|AAS96761.1| hydrogenase, CooL subunit, putative [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|311234412|gb|ADP87266.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfovibrio
           vulgaris RCH1]
          Length = 144

 Score = 95.1 bits (235), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 42/108 (38%), Positives = 68/108 (62%), Gaps = 1/108 (0%)

Query: 65  CAVEM-MQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYV 123
           C VE+   A +PRYD+ER G     SPR +D++++ G LT ++   + RV+D++P P+  
Sbjct: 25  CDVELATTACIPRYDVERLGCKYCGSPRHADIVLITGPLTARVKDKVLRVWDEIPAPKIT 84

Query: 124 ISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171
           +++G C   GG +   Y +    DR +P+DI VPGCPP  +A+I G++
Sbjct: 85  VAVGICPVSGGVFRDGYPIEGPLDRYIPIDINVPGCPPRPQAIIEGVV 132


>gi|89671|pir||PX0053 NADH2 dehydrogenase (ubiquinone) (EC 1.6.5.3) 20K chain - bovine
           (fragments)
          Length = 96

 Score = 95.1 bits (235), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 45/54 (83%), Positives = 48/54 (88%), Gaps = 4/54 (7%)

Query: 110 LRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTA 163
           L +VYDQMPEPRYV+SMGSCANGGGYYHYSYSVV    RIVPVDIYVPGCPP +
Sbjct: 36  LIKVYDQMPEPRYVVSMGSCANGGGYYHYSYSVV----RIVPVDIYVPGCPPAS 85


>gi|212704287|ref|ZP_03312415.1| hypothetical protein DESPIG_02342 [Desulfovibrio piger ATCC 29098]
 gi|212672249|gb|EEB32732.1| hypothetical protein DESPIG_02342 [Desulfovibrio piger ATCC 29098]
          Length = 149

 Score = 95.1 bits (235), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 42/112 (37%), Positives = 71/112 (63%), Gaps = 1/112 (0%)

Query: 65  CAVEM-MQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYV 123
           C VE+   A +PRYD+ER G     SPR +D++++ G LT ++   +  V++++PEP+  
Sbjct: 28  CDVELATTACIPRYDVERLGCRYCGSPRHADIVLITGPLTTRVRDRVLAVWNEIPEPKIT 87

Query: 124 ISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175
           +++G C   GG +   YS+     R +PVD+ VPGCPP  +A++ G++L +K
Sbjct: 88  VAVGICPISGGVFREGYSIEGPISRYIPVDVNVPGCPPRPQAILEGVVLARK 139


>gi|110289458|gb|AAP54717.2| NAD, putative [Oryza sativa Japonica Group]
          Length = 141

 Score = 94.7 bits (234), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 42/75 (56%), Positives = 57/75 (76%), Gaps = 1/75 (1%)

Query: 106 MASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPVDIYVPGCPPTAE 164
           MA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++PVD+Y+PGCPP  E
Sbjct: 1   MAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPE 60

Query: 165 ALIYGILLLQKKIRR 179
           A+I  +  L+KKI R
Sbjct: 61  AVIDALTKLRKKISR 75


>gi|288961341|ref|YP_003451680.1| NADH dehydrogenase I chain B [Azospirillum sp. B510]
 gi|288913649|dbj|BAI75136.1| NADH dehydrogenase I chain B [Azospirillum sp. B510]
          Length = 163

 Score = 94.4 bits (233), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 41/107 (38%), Positives = 69/107 (64%), Gaps = 1/107 (0%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E+     PRYD E+ G     +P+ +D+++++GTLT +   A+  +YDQ+P P+ V+
Sbjct: 29  CDIEITPLLSPRYDAEQLGIELHGTPKHADIVLISGTLTLRSRQAILDIYDQVPSPKAVV 88

Query: 125 SMGSCANGGGYYHYSYSVV-RGCDRIVPVDIYVPGCPPTAEALIYGI 170
           ++GSC   G  +  S  V+ +  D +VPVD++VPGCPP  +A++ GI
Sbjct: 89  ALGSCPLSGNVFAGSPLVLGQSLDSLVPVDVWVPGCPPRPQAILDGI 135


>gi|258653154|ref|YP_003202310.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Nakamurella
           multipartita DSM 44233]
 gi|258556379|gb|ACV79321.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Nakamurella
           multipartita DSM 44233]
          Length = 162

 Score = 94.0 bits (232), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 45/112 (40%), Positives = 65/112 (58%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C VE+  A  P YD ER+G    ASPR +D ++V G +T  MA  LRR Y  +P+P+ V+
Sbjct: 51  CEVEIGAAFGPVYDAERYGARLVASPRHADALLVTGVVTRNMAQPLRRTYQAVPDPKLVV 110

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKK 176
           ++G CA   G +  +  V      IVPVD+ +PGCPP  E ++ G+  L  +
Sbjct: 111 AVGDCARTCGVFRGAPGVAGAVGDIVPVDLEIPGCPPRPEDIVAGLRKLTGR 162


>gi|297837947|ref|XP_002886855.1| hypothetical protein ARALYDRAFT_475566 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297840985|ref|XP_002888374.1| hypothetical protein ARALYDRAFT_475599 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297332696|gb|EFH63114.1| hypothetical protein ARALYDRAFT_475566 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297334215|gb|EFH64633.1| hypothetical protein ARALYDRAFT_475599 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 141

 Score = 94.0 bits (232), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 43/75 (57%), Positives = 57/75 (76%), Gaps = 1/75 (1%)

Query: 106 MASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPVDIYVPGCPPTAE 164
           MA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++PVD+Y+PGCPP  E
Sbjct: 1   MAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPE 60

Query: 165 ALIYGILLLQKKIRR 179
           A+I  I  L+KKI R
Sbjct: 61  AVIDAITKLRKKIAR 75


>gi|317485983|ref|ZP_07944838.1| NADH ubiquinone oxidoreductase [Bilophila wadsworthia 3_1_6]
 gi|316922756|gb|EFV43987.1| NADH ubiquinone oxidoreductase [Bilophila wadsworthia 3_1_6]
          Length = 144

 Score = 93.6 bits (231), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 41/108 (37%), Positives = 69/108 (63%), Gaps = 1/108 (0%)

Query: 65  CAVEM-MQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYV 123
           C VE+   A + RYD+ER G     SPR +D++++ G LT ++   + RV++++PEP+  
Sbjct: 25  CDVELATTACISRYDVERLGCKYCGSPRHADIVLITGPLTARVKDKVLRVWNEIPEPKVT 84

Query: 124 ISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171
           +++G C   GG +   YS+    DR +P+D+ VPGCPP  +A++ G+L
Sbjct: 85  VAVGICPISGGVFREGYSIEGPVDRYLPIDVNVPGCPPRPQAIMEGVL 132


>gi|88603006|ref|YP_503184.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Methanospirillum
           hungatei JF-1]
 gi|88188468|gb|ABD41465.1| ech hydrogenase subunit C [Methanospirillum hungatei JF-1]
          Length = 148

 Score = 93.6 bits (231), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 39/116 (33%), Positives = 69/116 (59%), Gaps = 4/116 (3%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E++    P YD+ERFG     +P+ +D+ ++ G +       +  +Y+QMP P+ V+
Sbjct: 21  CDIEVLACLTPLYDVERFGILNTGNPKHADIFVITGGVNEINKEVVLNIYEQMPHPKVVV 80

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176
           ++G CA  GG +   Y++  G   ++PVD+YVPGC    E++I GI+    +L++K
Sbjct: 81  AVGICACSGGVFRECYNISGGVATVIPVDVYVPGCAARPESIIDGIVQALGILEQK 136


>gi|91786823|ref|YP_547775.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Polaromonas sp.
           JS666]
 gi|91696048|gb|ABE42877.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Polaromonas sp.
           JS666]
          Length = 181

 Score = 93.6 bits (231), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 45/117 (38%), Positives = 69/117 (58%), Gaps = 1/117 (0%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E+   + P Y++E  G    ASPR +D+++V G ++  M  ALRR YD  PEP+ V+
Sbjct: 57  CELEIHALNNPYYNIEGLGIKFVASPRHADMLLVTGPVSRHMDEALRRTYDATPEPKLVV 116

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
           ++G C   GG +  SY+       ++PVD+ VPGCPP    ++ GIL   ++ RR G
Sbjct: 117 AVGDCGCTGGIFGDSYASCGRVANVIPVDVTVPGCPPPPIEILRGILTAVRQ-RRPG 172


>gi|150399523|ref|YP_001323290.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanococcus
           vannielii SB]
 gi|150012226|gb|ABR54678.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanococcus
           vannielii SB]
          Length = 159

 Score = 93.2 bits (230), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 41/113 (36%), Positives = 68/113 (60%), Gaps = 1/113 (0%)

Query: 59  TFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMP 118
           T G   C +E++    PRYD+E++G     +PR++DV++V G +T      L  +Y++ P
Sbjct: 21  TGGCNGCDIEIVSTLAPRYDIEQYGIYVHNNPREADVLVVTGPVTGAWEKRLLELYEKTP 80

Query: 119 EPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171
           EP+ V+S+G+CA  GG +   + +    D+I+PVD  +PGCPP    +I  I+
Sbjct: 81  EPKIVVSIGACALSGGIFKEGH-IFGPVDKIIPVDAKLPGCPPRPSEIISAIV 132


>gi|186470860|ref|YP_001862178.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Burkholderia
           phymatum STM815]
 gi|184197169|gb|ACC75132.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Burkholderia
           phymatum STM815]
          Length = 176

 Score = 93.2 bits (230), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 43/107 (40%), Positives = 65/107 (60%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E+   + P Y++E  G    ASPR +D+++V G LT  M  A+RRV+   P P+ V+
Sbjct: 58  CELEIHALNNPYYNIEGLGIRFVASPRHADMLLVTGPLTLNMKEAVRRVWQATPHPKLVV 117

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171
           + G CA  GG +  SY+V      ++PVD+ +PGCPP+   L+ GIL
Sbjct: 118 AAGDCACTGGIFRDSYAVCGPPSNLLPVDVAIPGCPPSPFDLLTGIL 164


>gi|289641804|ref|ZP_06473961.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Frankia symbiont of
           Datisca glomerata]
 gi|289508329|gb|EFD29271.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Frankia symbiont of
           Datisca glomerata]
          Length = 160

 Score = 93.2 bits (230), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 45/112 (40%), Positives = 65/112 (58%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E+  A  P YD ER+G    ASPR +DV++V G +T  MA  LRR  +  P PR VI
Sbjct: 49  CEIEIAAAFGPVYDAERYGARVVASPRHADVLLVTGPVTRNMAEPLRRTVEATPRPRLVI 108

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKK 176
           ++G CA   G +   Y V      +VPVD+ VPGCPP  +A++  +  + ++
Sbjct: 109 AVGDCALNCGEFAGGYGVQGPVADVVPVDLQVPGCPPEPDAIVAALRTVTRR 160


>gi|148260403|ref|YP_001234530.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Acidiphilium
           cryptum JF-5]
 gi|146402084|gb|ABQ30611.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Acidiphilium
           cryptum JF-5]
          Length = 167

 Score = 93.2 bits (230), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 41/101 (40%), Positives = 62/101 (61%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E++      YDLERFG    ASPR +DV++V G +T  M++A R  Y+ MP P++V+
Sbjct: 57  CELEIIALGNVLYDLERFGLKLVASPRHADVLLVTGPMTRNMSAATRLAYEAMPAPKFVV 116

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEA 165
           ++G C   GG +  S   + G   ++PV + +PGCPPT  A
Sbjct: 117 AVGDCGRDGGVFAASPHCLGGTASVLPVTLTIPGCPPTPAA 157


>gi|325578545|ref|ZP_08148645.1| hydrogenase-4 component I [Haemophilus parainfluenzae ATCC 33392]
 gi|325159781|gb|EGC71911.1| hydrogenase-4 component I [Haemophilus parainfluenzae ATCC 33392]
          Length = 258

 Score = 92.8 bits (229), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 51/122 (41%), Positives = 71/122 (58%), Gaps = 4/122 (3%)

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           G   C +E+     P +D ERFG    ASPR +D+++  G +T  M +   R Y   P+P
Sbjct: 46  GCNGCEIEIFSTITPTFDAERFGIKVVASPRHADILLFTGAVTRAMRTPAMRAYQAAPDP 105

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176
           +  I+ G+C  GGG +H  Y V  G D+IVPVD+Y+PGCPPT  A IYG      LL +K
Sbjct: 106 KICIAYGACGCGGGIFHDLYCVWGGSDQIVPVDVYIPGCPPTPAATIYGFAVALGLLDQK 165

Query: 177 IR 178
           ++
Sbjct: 166 LK 167


>gi|301156407|emb|CBW15878.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit
           [Haemophilus parainfluenzae T3T1]
          Length = 258

 Score = 92.8 bits (229), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 51/122 (41%), Positives = 71/122 (58%), Gaps = 4/122 (3%)

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           G   C +E+     P +D ERFG    ASPR +D+++  G +T  M +   R Y   P+P
Sbjct: 46  GCNGCEIEIFSTITPTFDAERFGIKVVASPRHADILLFTGAVTRAMRTPAMRAYQAAPDP 105

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176
           +  I+ G+C  GGG +H  Y V  G D+IVPVD+Y+PGCPPT  A IYG      LL +K
Sbjct: 106 KICIAYGACGCGGGIFHDLYCVWGGSDQIVPVDVYIPGCPPTPAATIYGFAVALGLLDQK 165

Query: 177 IR 178
           ++
Sbjct: 166 LK 167


>gi|251792877|ref|YP_003007603.1| hydrogenase-4 subunit I [Aggregatibacter aphrophilus NJ8700]
 gi|247534270|gb|ACS97516.1| hydrogenase-4 component I [Aggregatibacter aphrophilus NJ8700]
          Length = 258

 Score = 92.8 bits (229), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 51/122 (41%), Positives = 72/122 (59%), Gaps = 4/122 (3%)

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           G   C +E+     P +D ERFG    ASPR +D+++  G++T  M +   R Y   P+P
Sbjct: 46  GCNGCEIEIFSTITPVFDAERFGIKVVASPRHADILLFTGSVTRAMRTPAMRAYQAAPDP 105

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176
           +  I+ G+C  GGG +H  Y V  G D+IVPVD+Y+PGCPPT  A IYG      LL +K
Sbjct: 106 KICIAYGACGCGGGIFHDLYCVWGGSDQIVPVDVYIPGCPPTPAATIYGFAMALGLLDQK 165

Query: 177 IR 178
           ++
Sbjct: 166 LK 167


>gi|77554378|gb|ABA97174.1| NAD, putative [Oryza sativa Japonica Group]
          Length = 141

 Score = 92.8 bits (229), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 41/75 (54%), Positives = 56/75 (74%), Gaps = 1/75 (1%)

Query: 106 MASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPVDIYVPGCPPTAE 164
           MA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++PVD+Y+P CPP  E
Sbjct: 1   MAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPSCPPKPE 60

Query: 165 ALIYGILLLQKKIRR 179
           A+I  +  L+KKI R
Sbjct: 61  AVIDALTKLRKKISR 75


>gi|91780242|ref|YP_555449.1| putative hydrogenase/oxidoreductase subunit [Burkholderia
           xenovorans LB400]
 gi|91692902|gb|ABE36099.1| Putative hydrogenase/oxidoreductase subunit [Burkholderia
           xenovorans LB400]
          Length = 175

 Score = 92.4 bits (228), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 42/107 (39%), Positives = 65/107 (60%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E+   + P Y+LE  G    ASPR +D+++V G LT  M  A+R  Y+  P+P+ V+
Sbjct: 57  CELEIHALNNPYYNLEGLGIRFVASPRHADMLLVTGPLTVNMTEAVRLAYEATPDPKLVV 116

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171
           + G CA  GG +  SY+V     +++PVD+ +PGCPP    ++ GIL
Sbjct: 117 ATGECACTGGMFKESYAVCGPLAKLLPVDVTIPGCPPPPLDILRGIL 163


>gi|224370960|ref|YP_002605124.1| HyfI [Desulfobacterium autotrophicum HRM2]
 gi|223693677|gb|ACN16960.1| HyfI [Desulfobacterium autotrophicum HRM2]
          Length = 258

 Score = 92.4 bits (228), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 43/101 (42%), Positives = 61/101 (60%)

Query: 77  YDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY 136
           +DL RFG    ASPR +D ++V G +T  M +AL++ YD +P P+ VI+ G+CA  GG Y
Sbjct: 158 WDLARFGIDFVASPRHADGLLVTGPVTRNMETALKKTYDALPSPKIVIATGACAISGGPY 217

Query: 137 HYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
                   G D I+PVD+Y+PGCPP    ++  +L    KI
Sbjct: 218 AGHAQQHNGVDAILPVDLYIPGCPPHPFTILEALLCYLGKI 258


>gi|296166652|ref|ZP_06849078.1| NADH-ubiquinone oxidoreductase [Mycobacterium parascrofulaceum ATCC
           BAA-614]
 gi|295897987|gb|EFG77567.1| NADH-ubiquinone oxidoreductase [Mycobacterium parascrofulaceum ATCC
           BAA-614]
          Length = 159

 Score = 92.0 bits (227), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 45/112 (40%), Positives = 62/112 (55%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C VE+  A  P YD ERFG    ASPR +D ++V G +T+ MA  LR   +  P PR VI
Sbjct: 48  CEVEIAGAFGPVYDAERFGARLVASPRHADALLVTGVVTHNMAGPLRTTIEATPRPRRVI 107

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKK 176
           + G CA   G +  +Y V      +VPVD+ +PGCPPT   ++  +  +  K
Sbjct: 108 ACGDCAIDRGVFGDAYGVAGAVGEVVPVDVEIPGCPPTPAQIVAALRSVTGK 159


>gi|326403595|ref|YP_004283677.1| putative NADH ubiquinone oxidoreductase [Acidiphilium multivorum
           AIU301]
 gi|325050457|dbj|BAJ80795.1| putative NADH ubiquinone oxidoreductase [Acidiphilium multivorum
           AIU301]
          Length = 167

 Score = 92.0 bits (227), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 40/101 (39%), Positives = 61/101 (60%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E++      YDLERFG    ASPR +DV++  G +T  M++A R  Y+ MP P++V+
Sbjct: 57  CELEIIALGNVLYDLERFGLKLVASPRHADVLLATGPMTRNMSAATRLAYEAMPAPKFVV 116

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEA 165
           ++G C   GG +  S   + G   ++PV + +PGCPPT  A
Sbjct: 117 AVGDCGRDGGVFAASPHCLGGTASVLPVTLTIPGCPPTPAA 157


>gi|288818462|ref|YP_003432810.1| Ni-Fe hydrogenase small subunit/NADH ubiquinone oxidoreductase 20
           kD subunit [Hydrogenobacter thermophilus TK-6]
 gi|288787862|dbj|BAI69609.1| Ni-Fe hydrogenase small subunit/NADH ubiquinone oxidoreductase 20
           kD subunit [Hydrogenobacter thermophilus TK-6]
 gi|308752052|gb|ADO45535.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Hydrogenobacter
           thermophilus TK-6]
          Length = 155

 Score = 92.0 bits (227), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 46/141 (32%), Positives = 75/141 (53%), Gaps = 3/141 (2%)

Query: 36  KGFLVTSVDQLVTWARTGSLMWM---TFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           + F V + D  V   +  SL      T     C +E+   + P YD+ERFG    ASP+ 
Sbjct: 7   RSFRVKTEDLKVKHKKVISLFIREVDTGSCNACEIEVANLNNPYYDVERFGIKFVASPKH 66

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           +DV+++ G +T  M   + + Y+  P P++V+++G C     Y+  SY+V     + +PV
Sbjct: 67  ADVLLITGCVTRNMLIPMIKAYENAPAPKFVLTVGDCTAECPYFKDSYAVEGPVSKHLPV 126

Query: 153 DIYVPGCPPTAEALIYGILLL 173
            ++VPGCPP    +I G+L L
Sbjct: 127 HVHVPGCPPEPAQVIEGLLKL 147


>gi|78708331|gb|ABB47306.1| NAD, putative [Oryza sativa Japonica Group]
          Length = 141

 Score = 91.7 bits (226), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 41/75 (54%), Positives = 56/75 (74%), Gaps = 1/75 (1%)

Query: 106 MASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPVDIYVPGCPPTAE 164
           MA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VR  D+++PVD+Y+PGCPP  E
Sbjct: 1   MAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRRVDKLIPVDVYLPGCPPKPE 60

Query: 165 ALIYGILLLQKKIRR 179
           A+I  +  L+KKI R
Sbjct: 61  AVIDALTKLRKKISR 75


>gi|258541876|ref|YP_003187309.1| NADH-ubiquinone oxidoreductase 20 kDa subunit [Acetobacter
           pasteurianus IFO 3283-01]
 gi|256632954|dbj|BAH98929.1| NADH-ubiquinone oxidoreductase 20 kDa subunit [Acetobacter
           pasteurianus IFO 3283-01]
 gi|256636011|dbj|BAI01980.1| NADH-ubiquinone oxidoreductase 20 kDa subunit [Acetobacter
           pasteurianus IFO 3283-03]
 gi|256639066|dbj|BAI05028.1| NADH-ubiquinone oxidoreductase 20 kDa subunit [Acetobacter
           pasteurianus IFO 3283-07]
 gi|256642120|dbj|BAI08075.1| NADH-ubiquinone oxidoreductase 20 kDa subunit [Acetobacter
           pasteurianus IFO 3283-22]
 gi|256645175|dbj|BAI11123.1| NADH-ubiquinone oxidoreductase 20 kDa subunit [Acetobacter
           pasteurianus IFO 3283-26]
 gi|256648230|dbj|BAI14171.1| NADH-ubiquinone oxidoreductase 20 kDa subunit [Acetobacter
           pasteurianus IFO 3283-32]
 gi|256651283|dbj|BAI17217.1| NADH-ubiquinone oxidoreductase 20 kDa subunit [Acetobacter
           pasteurianus IFO 3283-01-42C]
 gi|256654274|dbj|BAI20201.1| NADH-ubiquinone oxidoreductase 20 kDa subunit [Acetobacter
           pasteurianus IFO 3283-12]
          Length = 165

 Score = 91.7 bits (226), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 44/118 (37%), Positives = 68/118 (57%)

Query: 59  TFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMP 118
           T G   C +E+       YD+E  GF    SPR +DV+++ G LT  MA  L   +  MP
Sbjct: 35  TGGCGGCGMELQALRYAPYDMEGAGFGFVTSPRNADVLLITGALTRAMAPVLEAAWQAMP 94

Query: 119 EPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKK 176
            P+ +I++GSCA  GG +  +Y+V+ G +R V +D+ +PGCPP  + ++ G+  L  K
Sbjct: 95  TPKGLIAVGSCALDGGMFPENYTVLGGLERRVSIDLKIPGCPPAPQDVLNGLCSLFGK 152


>gi|329114352|ref|ZP_08243114.1| Formate hydrogenlyase subunit 7 [Acetobacter pomorum DM001]
 gi|326696428|gb|EGE48107.1| Formate hydrogenlyase subunit 7 [Acetobacter pomorum DM001]
          Length = 165

 Score = 91.3 bits (225), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 44/118 (37%), Positives = 68/118 (57%)

Query: 59  TFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMP 118
           T G   C +E+       YD+E  GF    SPR +DV+++ G LT  MA  L   +  MP
Sbjct: 35  TGGCGGCGMELQALRYAPYDMEGAGFGFVTSPRNADVLLITGALTRAMAPVLEAAWQAMP 94

Query: 119 EPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKK 176
            P+ +I++GSCA  GG +  +Y+V+ G +R V +D+ +PGCPP  + ++ G+  L  K
Sbjct: 95  TPKGLIAVGSCALDGGMFPENYTVLGGLERRVSIDLKIPGCPPAPQDVLNGLCSLFGK 152


>gi|295673893|ref|XP_002797492.1| NADH-ubiquinone oxidoreductase 20 kDa subunit [Paracoccidioides
           brasiliensis Pb01]
 gi|226280142|gb|EEH35708.1| NADH-ubiquinone oxidoreductase 20 kDa subunit [Paracoccidioides
           brasiliensis Pb01]
          Length = 159

 Score = 91.3 bits (225), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 53/129 (41%), Positives = 70/129 (54%), Gaps = 12/129 (9%)

Query: 28  RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
           RISS I+ +     S+D++V WAR GSL  ++FGLACC +EMM  SMPRYD +R G   R
Sbjct: 27  RISSLISLQEEKNGSIDKVVNWAREGSLWPLSFGLACCNMEMMAVSMPRYDQDRLGTIFR 86

Query: 88  ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCD 147
           ASPRQSDV+IVA  +T +              PR  ++ G      G   Y  S +    
Sbjct: 87  ASPRQSDVIIVADAVTKQDG------------PRLAVTRGQVRGQAGSSRYLCSELSSNG 134

Query: 148 RIVPVDIYV 156
           R + +  YV
Sbjct: 135 RDIALSDYV 143


>gi|167839774|ref|ZP_02466458.1| Formate hydrogenlyase subunit 7 [Burkholderia thailandensis MSMB43]
          Length = 174

 Score = 91.3 bits (225), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 44/114 (38%), Positives = 66/114 (57%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E+     P Y++E  G    ASPR +D++++ G LT  M  A+R  YD  P P+ V+
Sbjct: 57  CELELHALGNPYYNIEGLGIKFVASPRHADMLLITGPLTLNMRDAVRLAYDATPAPKLVV 116

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           + G CA  GG +  SY+V    + +VPVDI +PGCPP    L+ GI    +++R
Sbjct: 117 AAGDCACTGGVFAGSYAVCGPVETLVPVDIAIPGCPPRPLDLLRGIRSALERVR 170


>gi|2665481|gb|AAB88386.1| formate hydrogenlyase subunit 7 [Methanococcus maripaludis]
          Length = 147

 Score = 91.3 bits (225), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 46/131 (35%), Positives = 81/131 (61%), Gaps = 8/131 (6%)

Query: 55  LMWMTFGLACCAVEMMQASM-PRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRV 113
           ++  T G   C +E++   + P YD E++      +PR++DV++V G +T  ++++L+++
Sbjct: 14  MLVYTGGCNGCDIEVVNCVLSPFYDAEQYNVFLTWNPREADVLVVTGCVTKAVSASLKKI 73

Query: 114 YDQMPEPRYVISMGSCANGGGYYHY------SYSVVRG-CDRIVPVDIYVPGCPPTAEAL 166
           YD++PEP+ V++ G+CA  GG Y+       + + + G  + I+PVDI VPGCPP  E +
Sbjct: 74  YDEIPEPKAVVAAGACALMGGVYNNIGADLGTSTFIDGPVENIIPVDIKVPGCPPRPEDV 133

Query: 167 IYGILLLQKKI 177
           I GI+    KI
Sbjct: 134 ITGIVKALPKI 144


>gi|219670289|ref|YP_002460724.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfitobacterium
           hafniense DCB-2]
 gi|219540549|gb|ACL22288.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfitobacterium
           hafniense DCB-2]
          Length = 155

 Score = 91.3 bits (225), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 43/123 (34%), Positives = 67/123 (54%), Gaps = 5/123 (4%)

Query: 57  WMTFGLAC-----CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALR 111
           W    L C     C  EM     P YDL+RFG    ASPR +D+++  G ++  +  A  
Sbjct: 33  WHIRHLDCGSCNGCDWEMSALLNPIYDLQRFGLDFVASPRHADILMCTGPMSTHLIQAAL 92

Query: 112 RVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171
             Y+  P P+ +I++G CA  GG +  +Y+   G   ++PVDI +PGCPP+ + L+  +L
Sbjct: 93  ATYEGTPNPKKIIAVGDCALDGGMFKEAYAAHNGVGEVLPVDIKIPGCPPSPDELLKVLL 152

Query: 172 LLQ 174
            L+
Sbjct: 153 QLK 155


>gi|159905433|ref|YP_001549095.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanococcus
           maripaludis C6]
 gi|159886926|gb|ABX01863.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanococcus
           maripaludis C6]
          Length = 147

 Score = 91.3 bits (225), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 47/131 (35%), Positives = 81/131 (61%), Gaps = 8/131 (6%)

Query: 55  LMWMTFGLACCAVEMMQASM-PRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRV 113
           ++  T G   C +E++   + P YD E++      +PR++DV++V G +T  ++++L+++
Sbjct: 14  MLVYTGGCNGCDIEVVNCVLSPFYDAEQYNVFLTWNPREADVLVVTGCVTKAVSASLKKI 73

Query: 114 YDQMPEPRYVISMGSCANGGGYYHY------SYSVVRG-CDRIVPVDIYVPGCPPTAEAL 166
           YD++PEP+ VI+ G+CA  GG Y+       + + V G  + I+PVD+ VPGCPP  E +
Sbjct: 74  YDEIPEPKAVIAAGACALMGGVYNNIGGDLGTSTFVDGPVENIIPVDMKVPGCPPRPEDI 133

Query: 167 IYGILLLQKKI 177
           I GI+    KI
Sbjct: 134 ITGIVKALPKI 144


>gi|315230909|ref|YP_004071345.1| NADH-ubiquinone oxidoreductase subunit B [Thermococcus barophilus
           MP]
 gi|315183937|gb|ADT84122.1| NADH-ubiquinone oxidoreductase chain B [Thermococcus barophilus MP]
          Length = 192

 Score = 91.3 bits (225), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 44/132 (33%), Positives = 72/132 (54%), Gaps = 16/132 (12%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E++    P+ D+ERFG     SPR +D +   G +T +    +   +  +PEP+ V+
Sbjct: 19  CDIEILNIFAPKQDVERFGIKLVGSPRHADAIAFTGPVTRECLPKVIEAFKAVPEPKIVL 78

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIV-----------PVDIYVPGCPPTAEALIYGI--- 170
           ++GSCA GGG ++ +Y+V+ G   +            P  IY+PGCPP  EA+IY +   
Sbjct: 79  AIGSCACGGGIWYDTYAVIGGVKELYKILKEEYGIEPPTTIYIPGCPPKPEAIIYAVAMA 138

Query: 171 --LLLQKKIRRV 180
             L+ QK+ R +
Sbjct: 139 RGLVKQKQKREI 150


>gi|150402793|ref|YP_001330087.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanococcus
           maripaludis C7]
 gi|150033823|gb|ABR65936.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanococcus
           maripaludis C7]
          Length = 147

 Score = 90.9 bits (224), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 46/131 (35%), Positives = 80/131 (61%), Gaps = 8/131 (6%)

Query: 55  LMWMTFGLACCAVEMMQASM-PRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRV 113
           ++  T G   C +E++   + P YD E++      +PR++DV++V G +T  ++++L+++
Sbjct: 14  MLVYTGGCNGCDIEVVNCVLSPFYDAEQYNVFLTWNPREADVLVVTGCVTKAVSASLKKI 73

Query: 114 YDQMPEPRYVISMGSCANGGGYYHY------SYSVVRG-CDRIVPVDIYVPGCPPTAEAL 166
           YD++PEP+ V++ G+CA  GG Y        + S + G  + I+PVD+ VPGCPP  E +
Sbjct: 74  YDEIPEPKAVVAAGACALMGGVYKNIGADLGTSSFIDGPVENIIPVDVKVPGCPPRPEDV 133

Query: 167 IYGILLLQKKI 177
           I GI+    KI
Sbjct: 134 ITGIVKALPKI 144


>gi|89902056|ref|YP_524527.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Rhodoferax
           ferrireducens T118]
 gi|89346793|gb|ABD70996.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Rhodoferax
           ferrireducens T118]
          Length = 171

 Score = 90.9 bits (224), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 39/107 (36%), Positives = 64/107 (59%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E+     P Y++E  G    ASPR +D+++V G ++  M +AL+R +D +PEP+ V+
Sbjct: 58  CELEINALGNPYYNIEGLGIKFVASPRHADMLLVTGPVSRNMVTALKRTFDAIPEPKLVV 117

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171
           ++G C   GG +  SY+       ++PVD  +PGCPP    ++ GIL
Sbjct: 118 AVGDCGCDGGIFGESYASCGRVSNVIPVDWVIPGCPPPPIEILRGIL 164


>gi|45359024|ref|NP_988581.1| energy conserving hydrogenase A small subunit [Methanococcus
           maripaludis S2]
 gi|45047899|emb|CAF31017.1| energy conserving hydrogenase A small subunit [Methanococcus
           maripaludis S2]
          Length = 156

 Score = 90.9 bits (224), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 40/114 (35%), Positives = 69/114 (60%), Gaps = 3/114 (2%)

Query: 59  TFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMP 118
           T G   C +E++    PRYD+E++G     +PR++DV++V G +T      L  +Y++ P
Sbjct: 18  TGGCNGCDIEIVSCLAPRYDIEQYGIYVHNNPREADVLVVTGPVTGAWEKRLLEIYEKTP 77

Query: 119 EPRYVISMGSCANGGGYYHYSYSVVRG-CDRIVPVDIYVPGCPPTAEALIYGIL 171
           EP+ VI++G+CA  GG +   +  + G  D+++PVD  +PGCPP    +I  ++
Sbjct: 78  EPKIVIAVGACALSGGIFKEGH--IHGPVDKVIPVDAKLPGCPPRPSEIISAVV 129


>gi|291615014|ref|YP_003525171.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Sideroxydans
           lithotrophicus ES-1]
 gi|291585126|gb|ADE12784.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Sideroxydans
           lithotrophicus ES-1]
          Length = 171

 Score = 90.9 bits (224), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 40/107 (37%), Positives = 64/107 (59%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E+   +   Y++E  G    ASPR +D+++V G ++  M  AL+R YD  P+P+ V+
Sbjct: 57  CELEIHAVNNAYYNIEGMGIKFVASPRHADLLLVTGPVSRHMEIALKRTYDATPDPKLVV 116

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171
           ++G CA  GG +  SY+       ++PVD+ V GCPP   A++ GIL
Sbjct: 117 AIGDCACDGGIFGESYASCGKVSNVIPVDVVVSGCPPAPTAILQGIL 163


>gi|296532565|ref|ZP_06895272.1| NADH-quinone oxidoreductase subunit B [Roseomonas cervicalis ATCC
           49957]
 gi|296267104|gb|EFH13022.1| NADH-quinone oxidoreductase subunit B [Roseomonas cervicalis ATCC
           49957]
          Length = 167

 Score = 90.9 bits (224), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 42/97 (43%), Positives = 62/97 (63%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           CA+E+       +DLERFG    ASPR +DV++V+G +T  M  A +R +  M EP +V+
Sbjct: 22  CALEIAALRGVVHDLERFGLRFVASPRHADVLLVSGPMTRTMTEAAQRAHACMAEPGWVV 81

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP 161
           ++G CA GGG +  +Y+V  G    +PVD+ +PGCPP
Sbjct: 82  AVGDCALGGGVFAGAYAVEEGVGAALPVDLVIPGCPP 118


>gi|148642373|ref|YP_001272886.1| [NiFe]-hydrogenase-3-type complex, small subunit/NADH:quinone
           oxidoreductase (complex I), subunit PSST/NdhK/NuoB
           [Methanobrevibacter smithii ATCC 35061]
 gi|222444424|ref|ZP_03606939.1| hypothetical protein METSMIALI_00035 [Methanobrevibacter smithii
           DSM 2375]
 gi|261351026|ref|ZP_05976443.1| carbon monoxide-induced hydrogenase, CooL subunit
           [Methanobrevibacter smithii DSM 2374]
 gi|148551390|gb|ABQ86518.1| [NiFe]-hydrogenase-3-type complex, small subunit/NADH:quinone
           oxidoreductase (complex I), subunit PSST/NdhK/NuoB
           [Methanobrevibacter smithii ATCC 35061]
 gi|222433989|gb|EEE41154.1| hypothetical protein METSMIALI_00035 [Methanobrevibacter smithii
           DSM 2375]
 gi|288860366|gb|EFC92664.1| carbon monoxide-induced hydrogenase, CooL subunit
           [Methanobrevibacter smithii DSM 2374]
          Length = 149

 Score = 90.9 bits (224), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 40/112 (35%), Positives = 66/112 (58%), Gaps = 1/112 (0%)

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           G   C VE++  + PRYDLE++G     +PR++DV+++ G +T +    L+RVYD+ PEP
Sbjct: 23  GCNGCDVELVALTSPRYDLEQYGIYVHNNPREADVLLLTGAVTEQWVDNLKRVYDKAPEP 82

Query: 121 RYVISMGSCANGGGYYHYSYSVVRG-CDRIVPVDIYVPGCPPTAEALIYGIL 171
           + V+++G+C   G  ++     V       +PVD  +PGCPP    ++  IL
Sbjct: 83  KIVVAVGNCPQSGDVFNQEGGKVYAPASDFIPVDAEIPGCPPRPSEILEAIL 134


>gi|56477805|ref|YP_159394.1| subunit of putative formate hydrogenlyase-like membrane complex
           [Aromatoleum aromaticum EbN1]
 gi|56313848|emb|CAI08493.1| subunit of putative formate hydrogenlyase-like membrane complex
           [Aromatoleum aromaticum EbN1]
          Length = 187

 Score = 90.9 bits (224), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 47/139 (33%), Positives = 78/139 (56%), Gaps = 4/139 (2%)

Query: 35  HKGFLVTSVDQLVTWARTGSLMWMTFGLAC--CAVEMMQASMPRYDLERFGFAPRASPRQ 92
           H+  L+ + D L    R  ++  +  G +C  C +E+   + P Y++E  G    ASPR 
Sbjct: 27  HRAHLIHA-DILAILGRALAIRHVDGG-SCNGCELEIHALNNPYYNIEGLGIKFVASPRH 84

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           +D+++V G ++  M  AL+R YD +P P+ V+++G C   GG +  SY+       ++PV
Sbjct: 85  ADMLLVTGPVSRHMELALKRTYDAIPAPKLVVAIGDCGCTGGIFGESYASCGRISNVIPV 144

Query: 153 DIYVPGCPPTAEALIYGIL 171
           D+ VPGCPP    ++ GIL
Sbjct: 145 DVTVPGCPPPPADILAGIL 163


>gi|302421904|ref|XP_003008782.1| NADH-ubiquinone oxidoreductase 20 kDa subunit [Verticillium
           albo-atrum VaMs.102]
 gi|261351928|gb|EEY14356.1| NADH-ubiquinone oxidoreductase 20 kDa subunit [Verticillium
           albo-atrum VaMs.102]
          Length = 67

 Score = 90.9 bits (224), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 45/73 (61%), Positives = 52/73 (71%), Gaps = 17/73 (23%)

Query: 106 MASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEA 165
           MA ALR+VYDQMPEPR                  Y+VVRGCDRIVPVD+YVPGCPPT+EA
Sbjct: 1   MAPALRQVYDQMPEPR-----------------CYAVVRGCDRIVPVDVYVPGCPPTSEA 43

Query: 166 LIYGILLLQKKIR 178
           L+YGI  LQ+K+R
Sbjct: 44  LMYGIFQLQRKMR 56


>gi|45359185|ref|NP_988742.1| energy conserving hydrogenase B small subunit [Methanococcus
           maripaludis S2]
 gi|45048060|emb|CAF31178.1| energy conserving hydrogenase B small subunit [Methanococcus
           maripaludis S2]
          Length = 147

 Score = 90.5 bits (223), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 45/131 (34%), Positives = 81/131 (61%), Gaps = 8/131 (6%)

Query: 55  LMWMTFGLACCAVEMMQASM-PRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRV 113
           ++  T G   C +E++   + P YD E++      +PR++DV++V G +T  ++++L+++
Sbjct: 14  MLVYTGGCNGCDIEVVNCVLSPFYDAEQYNVFLTWNPREADVLVVTGCVTKAVSASLKKI 73

Query: 114 YDQMPEPRYVISMGSCANGGGYYHY------SYSVVRG-CDRIVPVDIYVPGCPPTAEAL 166
           YD++PEP+ V++ G+CA  GG Y+       + + + G  + I+PVD+ VPGCPP  E +
Sbjct: 74  YDEIPEPKAVVAAGACALMGGVYNNIGADLGTSTFIDGPVENIIPVDVKVPGCPPRPEDV 133

Query: 167 IYGILLLQKKI 177
           I GI+    KI
Sbjct: 134 ITGIVKALPKI 144


>gi|134046813|ref|YP_001098298.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Methanococcus
           maripaludis C5]
 gi|132664438|gb|ABO36084.1| membrane-bound hydrogenase subunit ehbM [Methanococcus maripaludis
           C5]
          Length = 147

 Score = 90.5 bits (223), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 46/131 (35%), Positives = 81/131 (61%), Gaps = 8/131 (6%)

Query: 55  LMWMTFGLACCAVEMMQASM-PRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRV 113
           ++  T G   C +E++   + P YD E++      +PR++DV++V G +T  ++++L+++
Sbjct: 14  MLVYTGGCNGCDIEVVNCVLSPFYDAEQYNVFLTWNPREADVLVVTGCVTKAVSASLKKI 73

Query: 114 YDQMPEPRYVISMGSCANGGGYYHY------SYSVVRG-CDRIVPVDIYVPGCPPTAEAL 166
           YD++PEP+ VI+ G+CA  GG Y+       + + + G  + I+PVD+ VPGCPP  E +
Sbjct: 74  YDEIPEPKAVIAAGACALMGGVYNNIGGDLGTSTFIDGPVENIIPVDMKVPGCPPRPEDI 133

Query: 167 IYGILLLQKKI 177
           I GI+    KI
Sbjct: 134 ISGIVKALPKI 144


>gi|90186408|gb|ABD91507.1| putative NADH dehydrogenase (ubiquinone) chain PSST precursor
           [Oryza sativa Indica Group]
          Length = 93

 Score = 90.5 bits (223), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 45/64 (70%), Positives = 49/64 (76%)

Query: 47  VTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKM 106
           + WAR GS+  MTFGLACCAVEMM A    YDL+RFG   R SPRQSD MI+AGTLTNKM
Sbjct: 1   MNWARRGSIWPMTFGLACCAVEMMHAGASCYDLDRFGVIFRPSPRQSDCMIIAGTLTNKM 60

Query: 107 ASAL 110
           A AL
Sbjct: 61  APAL 64


>gi|240169554|ref|ZP_04748213.1| oxidoreductase [Mycobacterium kansasii ATCC 12478]
          Length = 159

 Score = 90.5 bits (223), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 43/112 (38%), Positives = 63/112 (56%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C VE+  A  P YD ERFG    ASPR +D ++V G +T  MA  LR      P PR VI
Sbjct: 48  CEVEISGAFGPVYDAERFGARLVASPRHADALLVTGVVTRNMAQPLRNTLAATPAPRLVI 107

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKK 176
           + G CA   G +  +Y VV     ++PVD+ +PGCPP+ + ++  +  + ++
Sbjct: 108 ACGDCALNRGVFGDAYGVVGSVGEVIPVDVEIPGCPPSPDQVVMALRSVTRR 159


>gi|218884266|ref|YP_002428648.1| NADH-quinone oxidoreductase, B subunit [Desulfurococcus
           kamchatkensis 1221n]
 gi|218765882|gb|ACL11281.1| NADH-quinone oxidoreductase, B subunit [Desulfurococcus
           kamchatkensis 1221n]
          Length = 337

 Score = 90.1 bits (222), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 48/135 (35%), Positives = 74/135 (54%)

Query: 43  VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL 102
           ++++  WA   SL  + +  AC AVE     M   D ER+G+ P  SPRQSD+ I  G L
Sbjct: 2   LERIARWAYARSLWMIHYCSACGAVEFPPLVMAPLDWERYGYMPTPSPRQSDLYIGMGYL 61

Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162
           T K    +  +Y QMPEP+ V++  +C + GG Y  SY+  +  D  + V+ +VPGC P 
Sbjct: 62  TKKTVKLVLNMYRQMPEPKLVLAGCNCTSTGGPYWDSYATYKRLDDFIEVEGWVPGCMPM 121

Query: 163 AEALIYGILLLQKKI 177
            +  +  I  ++K +
Sbjct: 122 PDDYLSMIEYVRKDL 136


>gi|302039526|ref|YP_003799848.1| putative formate hydrogenlyase small subunit [Candidatus Nitrospira
           defluvii]
 gi|300607590|emb|CBK43923.1| putative Formate hydrogenlyase, small subunit [Candidatus
           Nitrospira defluvii]
          Length = 173

 Score = 90.1 bits (222), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 43/111 (38%), Positives = 65/111 (58%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +EM   + P YD+ERFG    ASPR +D ++V G +T  M  AL+ VY    +P+ VI
Sbjct: 56  CEMEMNALANPVYDVERFGVHIAASPRHADALVVTGPVTVNMERALKDVYKATADPKIVI 115

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175
           ++G CA   G +  SY+V    DR +PVD+ + GCPP    ++  +  L++
Sbjct: 116 ALGDCAVNCGMFKGSYAVTGPVDRHIPVDVRISGCPPRPAEILAVLAKLRQ 166


>gi|224373087|ref|YP_002607459.1| hydrogenase-4 component I [Nautilia profundicola AmH]
 gi|223589382|gb|ACM93118.1| hydrogenase-4 component I [Nautilia profundicola AmH]
          Length = 142

 Score = 90.1 bits (222), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 45/119 (37%), Positives = 71/119 (59%), Gaps = 5/119 (4%)

Query: 65  CAVEMMQASM-PRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYV 123
           C VE+   +M PRYD+ER G     SP+ +D+++V G +T +    L  V D++P P  V
Sbjct: 21  CDVELATTAMIPRYDVERLGCRYTGSPKHADILLVTGPITARSKPYLLEVLDELPNPFVV 80

Query: 124 ISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKKIR 178
           +++G+C    G +  SY++    DR V VD+ VPGCPP  +A+I G+     + ++KIR
Sbjct: 81  VAVGTCPTSCGIFRDSYAIEGPLDRYVKVDVNVPGCPPRPQAIIDGVAKALEIWKQKIR 139


>gi|167819736|ref|ZP_02451416.1| putative hydrogenase subunit [Burkholderia pseudomallei 91]
          Length = 172

 Score = 90.1 bits (222), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 42/106 (39%), Positives = 62/106 (58%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E+     P Y++E  G    ASPR +D++++ G LT  M  A+R  YD  P P+ V+
Sbjct: 57  CELELHALGNPYYNIESLGIKFVASPRHADMLLITGPLTLNMRDAVRLAYDATPAPKLVV 116

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGI 170
           + G CA  GG +  SY+V    + +VPVD+ +PGCPP    L+ GI
Sbjct: 117 AAGDCACTGGVFAGSYAVCGPIETLVPVDVAIPGCPPRPIELLRGI 162


>gi|303243649|ref|ZP_07329990.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanothermococcus
           okinawensis IH1]
 gi|302485891|gb|EFL48814.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanothermococcus
           okinawensis IH1]
          Length = 155

 Score = 90.1 bits (222), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 40/113 (35%), Positives = 69/113 (61%), Gaps = 1/113 (0%)

Query: 59  TFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMP 118
           T G   C +E++    PRYD+E++G     +PR++D+++V G +T    + L+ +Y++ P
Sbjct: 18  TGGCNGCDIELVATLAPRYDIEQYGIHVHNNPREADILVVTGPVTLPWKNRLKEIYEKTP 77

Query: 119 EPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171
           EP+ VI++G+CA   G +   + V    D+I+PV+  VPGCPP    +I  +L
Sbjct: 78  EPKIVIAVGACALSCGIFKEGH-VCGPVDKIIPVNAKVPGCPPRPAEIIEAVL 129


>gi|209515026|ref|ZP_03263895.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Burkholderia sp.
           H160]
 gi|209504652|gb|EEA04639.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Burkholderia sp.
           H160]
          Length = 169

 Score = 90.1 bits (222), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 43/108 (39%), Positives = 64/108 (59%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E+   + P Y++E  G    ASPR +D+++V G +T  M +AL   YD  P P+ V+
Sbjct: 57  CELEIHALNNPYYNIEGLGIKFVASPRHADLLLVTGPVTLNMRAALLAAYDATPAPKLVV 116

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILL 172
           + G CA  GG +  SY+V      I+PVD+ +PGCPP    L+ GIL+
Sbjct: 117 AAGECACTGGIFADSYAVCGPVSSILPVDVMIPGCPPPPVDLLRGILV 164


>gi|224372780|ref|YP_002607152.1| hydrogenase subunit [Nautilia profundicola AmH]
 gi|223589533|gb|ACM93269.1| hydrogenase subunit [Nautilia profundicola AmH]
          Length = 166

 Score = 90.1 bits (222), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 43/111 (38%), Positives = 65/111 (58%), Gaps = 3/111 (2%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C  E    S P YDLER G    ASPR +DVM ++G +T  M       Y+QMP P++VI
Sbjct: 56  CEAECNALSNPYYDLERLGIHFVASPRHADVMFLSGVMTMNMYHHAIDCYNQMPSPKWVI 115

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175
           ++G C    G +  +Y+ ++G D  + +D ++PGCPP+ + +I G+L   K
Sbjct: 116 AIGECVKDMGVFEKTYA-IKGND--LKIDYFIPGCPPSPKDIIKGLLKFLK 163


>gi|320355287|ref|YP_004196626.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfobulbus
           propionicus DSM 2032]
 gi|320123789|gb|ADW19335.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfobulbus
           propionicus DSM 2032]
          Length = 248

 Score = 90.1 bits (222), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 43/116 (37%), Positives = 64/116 (55%)

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           G   C  +    + P +DL RFG    ASPR +D + V G +T  M +AL   Y  +P P
Sbjct: 133 GCNACEADTNVLNTPFFDLSRFGIDFVASPRHADGIHVTGPITRNMRTALLDTYAAVPAP 192

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKK 176
           + VI+ G CA  GG +H S  ++   + ++PVD+Y+PGCPP     ++ +L   KK
Sbjct: 193 KVVIASGCCAISGGPFHGSREILGDLNALIPVDLYIPGCPPHPLTTLHALLAFFKK 248


>gi|295699055|ref|YP_003606948.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Burkholderia sp.
           CCGE1002]
 gi|295438268|gb|ADG17437.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Burkholderia sp.
           CCGE1002]
          Length = 169

 Score = 89.7 bits (221), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 43/107 (40%), Positives = 63/107 (58%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E+   + P Y++E  G    ASPR +D+++V G +T  M +AL   YD  P P+ V+
Sbjct: 57  CELEIHALNNPYYNIEGLGIKFVASPRHADLLLVTGPVTLNMRAALLAAYDATPAPKLVV 116

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171
           + G CA  GG +  SY+V      I+PVD+ +PGCPP    L+ GIL
Sbjct: 117 AAGECACTGGIFANSYAVCGPVSSILPVDVTIPGCPPPPIDLLRGIL 163


>gi|53722170|ref|YP_111155.1| hydrogenase/oxidoreductase subunit [Burkholderia pseudomallei
           K96243]
 gi|126443278|ref|YP_001062608.1| putative hydrogenase subunit [Burkholderia pseudomallei 668]
 gi|126457616|ref|YP_001075561.1| putative hydrogenase subunit [Burkholderia pseudomallei 1106a]
 gi|134283533|ref|ZP_01770233.1| putative hydrogenase subunit [Burkholderia pseudomallei 305]
 gi|167723605|ref|ZP_02406841.1| putative hydrogenase subunit [Burkholderia pseudomallei DM98]
 gi|167849586|ref|ZP_02475094.1| putative hydrogenase subunit [Burkholderia pseudomallei B7210]
 gi|167906546|ref|ZP_02493751.1| putative hydrogenase subunit [Burkholderia pseudomallei NCTC 13177]
 gi|167922746|ref|ZP_02509837.1| putative hydrogenase subunit [Burkholderia pseudomallei BCC215]
 gi|217418381|ref|ZP_03449888.1| putative hydrogenase subunit [Burkholderia pseudomallei 576]
 gi|226200219|ref|ZP_03795764.1| putative hydrogenase subunit [Burkholderia pseudomallei Pakistan 9]
 gi|237510550|ref|ZP_04523265.1| formate hydrogenlyase subunit 7 [Burkholderia pseudomallei MSHR346]
 gi|242311023|ref|ZP_04810040.1| putative hydrogenase subunit [Burkholderia pseudomallei 1106b]
 gi|254190228|ref|ZP_04896737.1| putative hydrogenase subunit [Burkholderia pseudomallei Pasteur
           52237]
 gi|254193464|ref|ZP_04899898.1| putative hydrogenase subunit [Burkholderia pseudomallei S13]
 gi|254262469|ref|ZP_04953334.1| putative hydrogenase subunit [Burkholderia pseudomallei 1710a]
 gi|52212584|emb|CAH38610.1| putative hydrogenase/oxidoreductase subunit [Burkholderia
           pseudomallei K96243]
 gi|126222769|gb|ABN86274.1| putative hydrogenase subunit [Burkholderia pseudomallei 668]
 gi|126231384|gb|ABN94797.1| putative hydrogenase subunit [Burkholderia pseudomallei 1106a]
 gi|134245282|gb|EBA45376.1| putative hydrogenase subunit [Burkholderia pseudomallei 305]
 gi|157937905|gb|EDO93575.1| putative hydrogenase subunit [Burkholderia pseudomallei Pasteur
           52237]
 gi|169650217|gb|EDS82910.1| putative hydrogenase subunit [Burkholderia pseudomallei S13]
 gi|217397685|gb|EEC37700.1| putative hydrogenase subunit [Burkholderia pseudomallei 576]
 gi|225927727|gb|EEH23769.1| putative hydrogenase subunit [Burkholderia pseudomallei Pakistan 9]
 gi|235002755|gb|EEP52179.1| formate hydrogenlyase subunit 7 [Burkholderia pseudomallei MSHR346]
 gi|242134262|gb|EES20665.1| putative hydrogenase subunit [Burkholderia pseudomallei 1106b]
 gi|254213471|gb|EET02856.1| putative hydrogenase subunit [Burkholderia pseudomallei 1710a]
          Length = 172

 Score = 89.7 bits (221), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 42/106 (39%), Positives = 62/106 (58%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E+     P Y++E  G    ASPR +D++++ G LT  M  A+R  YD  P P+ V+
Sbjct: 57  CELELHALGNPYYNIEGLGIKFVASPRHADMLLITGPLTLNMRDAVRLAYDATPAPKLVV 116

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGI 170
           + G CA  GG +  SY+V    + +VPVD+ +PGCPP    L+ GI
Sbjct: 117 AAGDCACTGGVFAGSYAVCGPIETLVPVDVAIPGCPPRPIELLRGI 162


>gi|261403244|ref|YP_003247468.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanocaldococcus
           vulcanius M7]
 gi|261370237|gb|ACX72986.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanocaldococcus
           vulcanius M7]
          Length = 148

 Score = 89.7 bits (221), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 45/126 (35%), Positives = 76/126 (60%), Gaps = 8/126 (6%)

Query: 54  SLMWMTFGLACCAVEMMQASM-PRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRR 112
           +++  T G   C +E++ A   P YD E++      +PR++D++IV G +T  +A +LR+
Sbjct: 13  AMLVYTGGCNACDIEVVNAVFSPYYDAEQYNVFLTFNPREADILIVTGCVTKVVAESLRQ 72

Query: 113 VYDQMPEPRYVISMGSCANGGGYYHY-------SYSVVRGCDRIVPVDIYVPGCPPTAEA 165
           +Y+++PEP+ VI++G+CA  GG Y         S  +    + I+PVD+ VPGC P  E 
Sbjct: 73  IYEKIPEPKAVIAVGACALMGGVYKNIGGDLGTSEFIAGPVENIIPVDVKVPGCAPRPED 132

Query: 166 LIYGIL 171
           +I GI+
Sbjct: 133 IISGIV 138


>gi|289804981|ref|ZP_06535610.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
           serovar Typhi str. AG3]
          Length = 89

 Score = 89.7 bits (221), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 48/89 (53%), Positives = 64/89 (71%), Gaps = 3/89 (3%)

Query: 67  VEMMQASMPRYDLERFGF-APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVIS 125
           VEM+ +    +D+ RFG    RASPRQ+D+M+VAGT   KMA  ++R+YDQM EP++VIS
Sbjct: 2   VEMVTSFTAVHDVARFGAEVLRASPRQADLMVVAGTCFTKMAPVIQRLYDQMLEPKWVIS 61

Query: 126 MGSCANGGGYYHYSYSVVRGCDRIVPVDI 154
           MG+CAN GG Y   YSVV+G   + PVD+
Sbjct: 62  MGACANSGGMYDI-YSVVQGLISL-PVDV 88


>gi|167828121|ref|ZP_02459592.1| putative hydrogenase subunit [Burkholderia pseudomallei 9]
          Length = 165

 Score = 89.7 bits (221), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 42/106 (39%), Positives = 62/106 (58%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E+     P Y++E  G    ASPR +D++++ G LT  M  A+R  YD  P P+ V+
Sbjct: 57  CELELHALGNPYYNIEGLGIKFVASPRHADMLLITGPLTLNMRDAVRLAYDATPAPKLVV 116

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGI 170
           + G CA  GG +  SY+V    + +VPVD+ +PGCPP    L+ GI
Sbjct: 117 AAGDCACTGGVFAGSYAVCGPIETLVPVDVAIPGCPPRPIELLRGI 162


>gi|167742571|ref|ZP_02415345.1| putative hydrogenase subunit [Burkholderia pseudomallei 14]
 gi|167914902|ref|ZP_02501993.1| putative hydrogenase subunit [Burkholderia pseudomallei 112]
 gi|254300487|ref|ZP_04967933.1| putative hydrogenase subunit [Burkholderia pseudomallei 406e]
 gi|157810342|gb|EDO87512.1| putative hydrogenase subunit [Burkholderia pseudomallei 406e]
          Length = 172

 Score = 89.7 bits (221), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 42/106 (39%), Positives = 62/106 (58%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E+     P Y++E  G    ASPR +D++++ G LT  M  A+R  YD  P P+ V+
Sbjct: 57  CELELHALGNPYYNIEGLGIKFVASPRHADMLLITGPLTLNMRDAVRLAYDATPAPKLVV 116

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGI 170
           + G CA  GG +  SY+V    + +VPVD+ +PGCPP    L+ GI
Sbjct: 117 AAGDCACTGGVFAGSYAVCGPIETLVPVDVAIPGCPPRPIELLRGI 162


>gi|134045163|ref|YP_001096649.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Methanococcus
           maripaludis C5]
 gi|132662788|gb|ABO34434.1| membrane-bound hydrogenase subunit ehaN [Methanococcus maripaludis
           C5]
          Length = 156

 Score = 89.4 bits (220), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 40/116 (34%), Positives = 69/116 (59%), Gaps = 3/116 (2%)

Query: 59  TFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMP 118
           T G   C +E++    PRYD+E++G     +PR++DV++V G +T      L  +Y++ P
Sbjct: 18  TGGCNGCDIEVVSCLAPRYDIEQYGIYVHNNPREADVLVVTGPVTGAWEKRLLEIYEKTP 77

Query: 119 EPRYVISMGSCANGGGYYHYSYSVVRG-CDRIVPVDIYVPGCPPTAEALIYGILLL 173
           EP+ VI++G+CA  GG +   +  + G  D ++PVD  +PGCPP    +I  ++ +
Sbjct: 78  EPKIVIAVGACALSGGIFKEGH--IHGPVDSVIPVDAKLPGCPPRPSEIISAVVTI 131


>gi|89895860|ref|YP_519347.1| formate hydrogenlyase subunit 7 [Desulfitobacterium hafniense Y51]
 gi|89335308|dbj|BAE84903.1| formate hydrogenlyase subunit 7 [Desulfitobacterium hafniense Y51]
          Length = 155

 Score = 89.4 bits (220), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 43/123 (34%), Positives = 66/123 (53%), Gaps = 5/123 (4%)

Query: 57  WMTFGLAC-----CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALR 111
           W    L C     C  EM     P YDL+RFG    ASPR +D+++  G ++  +  A  
Sbjct: 33  WHIRHLDCGSCNGCDWEMSALLNPIYDLQRFGLDFVASPRHADILMCTGPMSTHLIQAAL 92

Query: 112 RVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171
             Y+  P P+ +I++G CA  GG +  +Y+   G    +PVDI +PGCPP+ + L+  +L
Sbjct: 93  ATYEGTPNPKRIIAVGDCALDGGMFKEAYAAHNGVGEALPVDIKIPGCPPSPDELLKVLL 152

Query: 172 LLQ 174
            L+
Sbjct: 153 QLK 155


>gi|320101195|ref|YP_004176787.1| NADH dehydrogenase (ubiquinone) 30 kDa subunit [Desulfurococcus
           mucosus DSM 2162]
 gi|319753547|gb|ADV65305.1| NADH dehydrogenase (ubiquinone) 30 kDa subunit [Desulfurococcus
           mucosus DSM 2162]
          Length = 338

 Score = 89.4 bits (220), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 47/122 (38%), Positives = 67/122 (54%)

Query: 43  VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL 102
           +++   W+ + SL  + +  AC AVE     M   D ER+G+ P  SPRQSD+ I  G L
Sbjct: 3   LEKAAKWSFSRSLWMIHYCSACGAVEFPPLVMSPLDWERYGYMPTPSPRQSDLYIGMGYL 62

Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162
           T K       +Y QMPEPR V++  +C + GG Y  SY+  +  D  V V+ +VPGC P 
Sbjct: 63  TKKTVKLFLNMYRQMPEPRLVLAGCNCTSTGGLYWDSYATYKRLDDFVEVEGWVPGCMPM 122

Query: 163 AE 164
            +
Sbjct: 123 PD 124


>gi|159905595|ref|YP_001549257.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanococcus
           maripaludis C6]
 gi|159887088|gb|ABX02025.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanococcus
           maripaludis C6]
          Length = 156

 Score = 89.4 bits (220), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 40/116 (34%), Positives = 69/116 (59%), Gaps = 3/116 (2%)

Query: 59  TFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMP 118
           T G   C +E++    PRYD+E++G     +PR++DV++V G +T      L  +Y++ P
Sbjct: 18  TGGCNGCDIEVVSCLAPRYDIEQYGIYVHNNPREADVLVVTGPVTGAWEKRLLEIYEKTP 77

Query: 119 EPRYVISMGSCANGGGYYHYSYSVVRG-CDRIVPVDIYVPGCPPTAEALIYGILLL 173
           EP+ VI++G+CA  GG +   +  + G  D ++PVD  +PGCPP    +I  ++ +
Sbjct: 78  EPKIVIAVGACALSGGIFKEGH--IHGPVDSVIPVDAKLPGCPPRPSEIISAVVAI 131


>gi|150399680|ref|YP_001323447.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanococcus
           vannielii SB]
 gi|150012383|gb|ABR54835.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanococcus
           vannielii SB]
          Length = 147

 Score = 89.0 bits (219), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 44/131 (33%), Positives = 80/131 (61%), Gaps = 8/131 (6%)

Query: 55  LMWMTFGLACCAVEMMQASM-PRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRV 113
           ++  T G   C +E++   + P YD E++      +PR++D+++V G +T  +  +L+++
Sbjct: 14  MLVYTGGCNGCDIEVVNCVLSPFYDAEQYNVFLTWNPREADILVVTGCVTKSVTKSLKKI 73

Query: 114 YDQMPEPRYVISMGSCANGGGYYHY------SYSVVRG-CDRIVPVDIYVPGCPPTAEAL 166
           Y+++P P+ V+S+G+CA  GG Y+       + + V G  ++I+PVD+ VPGCPP  E +
Sbjct: 74  YEEIPNPKAVVSVGACALMGGVYNNIGADLGTSTFVDGPVEKIIPVDVKVPGCPPRPEDV 133

Query: 167 IYGILLLQKKI 177
           I GI+    KI
Sbjct: 134 ITGIVKALPKI 144


>gi|118463973|ref|YP_884232.1| hydrogenase-4, I subunit, putative [Mycobacterium avium 104]
 gi|118165260|gb|ABK66157.1| hydrogenase-4, I subunit, putative [Mycobacterium avium 104]
          Length = 135

 Score = 89.0 bits (219), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 45/103 (43%), Positives = 57/103 (55%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C VE+  A  P YD ERFG    ASPR +D ++V G +T  M   LR      P+PR VI
Sbjct: 24  CEVEISGAFGPVYDAERFGARLVASPRHADALLVTGVVTRNMVEPLRNTLAATPQPRVVI 83

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALI 167
           + G CA   G +  +Y VV     IVPVD+ V GCPPT   ++
Sbjct: 84  ACGDCALNRGVFTDAYGVVGAVGEIVPVDVEVAGCPPTPAQIV 126


>gi|162453072|ref|YP_001615439.1| NAD-dependent dehydrogenase subunit [Sorangium cellulosum 'So ce
           56']
 gi|161163654|emb|CAN94959.1| NAD-dependent dehydrogenase subunit [Sorangium cellulosum 'So ce
           56']
          Length = 250

 Score = 88.6 bits (218), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 41/113 (36%), Positives = 65/113 (57%)

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           G   C +E+   +   +D++RFG    ASPR +D +++ G LT  M  A++  +D MP+P
Sbjct: 134 GCNACELELNAVTNVNFDVQRFGIEWVASPRHADALVLTGPLTRNMKEAVQLAWDAMPDP 193

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLL 173
           R+++++G+CA  GG Y  +  V RG    V   +YVPGCPP     +  +L L
Sbjct: 194 RFIVAVGACAISGGLYDGAAGVDRGFLERVGPSLYVPGCPPHPLTFVNAVLDL 246


>gi|15669553|ref|NP_248366.1| formate hydrogenlyase subunit 7 [Methanocaldococcus jannaschii DSM
           2661]
 gi|41018429|sp|Q58758|Y1363_METJA RecName: Full=Uncharacterized protein MJ1363
 gi|1592007|gb|AAB99371.1| formate hydrogenlyase, subunit 7 [Methanocaldococcus jannaschii DSM
           2661]
          Length = 151

 Score = 88.6 bits (218), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 45/131 (34%), Positives = 77/131 (58%), Gaps = 8/131 (6%)

Query: 55  LMWMTFGLACCAVEMMQASM-PRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRV 113
           ++  T G   C +E++ A   P YD E++      +PR++D+++V G +T  +A +LR++
Sbjct: 17  MLVYTGGCNACDIEVVNAIFSPFYDAEQYNVFLTFNPREADILVVTGCVTKVVAESLRKI 76

Query: 114 YDQMPEPRYVISMGSCANGGGYYH-------YSYSVVRGCDRIVPVDIYVPGCPPTAEAL 166
           Y+++PEP+ V+++G+CA  GG Y         S  V    + I+PVD+ VPGC P  E +
Sbjct: 77  YEKIPEPKAVVAVGACALMGGVYKNIGGDLGTSDFVAGPVENIIPVDVKVPGCAPRPEDI 136

Query: 167 IYGILLLQKKI 177
           I GI+    K+
Sbjct: 137 IAGIVKALPKV 147


>gi|256810104|ref|YP_003127473.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanocaldococcus
           fervens AG86]
 gi|256793304|gb|ACV23973.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanocaldococcus
           fervens AG86]
          Length = 147

 Score = 88.6 bits (218), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 44/131 (33%), Positives = 77/131 (58%), Gaps = 8/131 (6%)

Query: 55  LMWMTFGLACCAVEMMQASM-PRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRV 113
           ++  T G   C +E++ A   P YD E++      +PR++D+++V G +T  +A +L+++
Sbjct: 14  MLVYTGGCNACDIEVVNAIFSPFYDAEQYNVFLTFNPREADILVVTGCVTKTVAESLKKI 73

Query: 114 YDQMPEPRYVISMGSCANGGGYYH-------YSYSVVRGCDRIVPVDIYVPGCPPTAEAL 166
           Y+++PEP+ V+++G+CA  GG Y         S  V    + I+PVD+ VPGC P  E +
Sbjct: 74  YEKIPEPKAVVAVGACALMGGVYKNIGGDLGTSDFVAGPVENIIPVDVKVPGCAPRPEDI 133

Query: 167 IYGILLLQKKI 177
           I GI+    K+
Sbjct: 134 ITGIIRALPKV 144


>gi|167589517|ref|ZP_02381905.1| Putative hydrogenase/oxidoreductase subunit [Burkholderia ubonensis
           Bu]
          Length = 169

 Score = 88.6 bits (218), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 42/107 (39%), Positives = 63/107 (58%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E+   + P Y++E  G    ASPR +D+++V G +T  M +A+   YD  P P+ V+
Sbjct: 57  CELEIHALNNPVYNIEGLGIKFVASPRHADLLLVTGPVTLNMRAAVLAAYDATPSPKLVV 116

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171
           + G CA  GG +  SY+V      I+PVD+ +PGCPP    L+ GIL
Sbjct: 117 AAGECACTGGIFADSYAVCGPVSSILPVDVTIPGCPPPPVDLLRGIL 163


>gi|189425610|ref|YP_001952787.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Geobacter lovleyi
           SZ]
 gi|189421869|gb|ACD96267.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Geobacter lovleyi
           SZ]
          Length = 252

 Score = 88.2 bits (217), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 39/101 (38%), Positives = 63/101 (62%)

Query: 77  YDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY 136
           +DL RFG    ASPR +D + V G ++  M  AL + ++ +P P+ V++ G+CA  GG +
Sbjct: 151 WDLGRFGIQFVASPRHADGIWVTGPVSENMREALLKTWEAIPAPKIVVACGACAIAGGPF 210

Query: 137 HYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
             S  +  G D ++PVD+Y+PGCPP    ++ G+L LQ ++
Sbjct: 211 SGSPQISLGLDTLLPVDLYIPGCPPHPATILDGLLRLQGRL 251


>gi|152990463|ref|YP_001356185.1| Ni-Fe hydrogenase, small subunit HycG [Nitratiruptor sp. SB155-2]
 gi|151422324|dbj|BAF69828.1| Ni-Fe hydrogenase, small subunit HycG [Nitratiruptor sp. SB155-2]
          Length = 167

 Score = 88.2 bits (217), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 40/107 (37%), Positives = 62/107 (57%), Gaps = 1/107 (0%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C  E    S P YDLER G    ASPR +D+++V+G +T  M   L   Y+Q+P P++VI
Sbjct: 56  CEAECNALSNPYYDLERLGIRFVASPRHADILLVSGVVTFNMLPHLLDAYEQLPSPKWVI 115

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171
           ++G C   G  +  S+++       +PV  ++PGCPPT + ++ G L
Sbjct: 116 TLGDCTQ-GTLFKDSFAIKGPVKEHLPVAYHIPGCPPTPDEIVRGFL 161


>gi|251772759|gb|EES53321.1| putative hydrogenase-3 subunit (HycG) [Leptospirillum
           ferrodiazotrophum]
          Length = 163

 Score = 88.2 bits (217), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 40/107 (37%), Positives = 61/107 (57%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E+     P   L   GF+  ASPR +D+++V G ++  M  AL   +  MP P+ V+
Sbjct: 47  CELELWALENPVTSLSSLGFSFVASPRHADILLVTGPVSCHMKEALETTHQAMPAPKRVL 106

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171
           ++G CA  GG +  SY+   G   I+P D+ V GCPP  EA++ G+L
Sbjct: 107 AVGDCAISGGVFRGSYATHDGLSSILPPDVTVHGCPPPPEAIVEGVL 153


>gi|94313588|ref|YP_586797.1| hydrogenase 4 subunit I [Cupriavidus metallidurans CH34]
 gi|93357440|gb|ABF11528.1| Hydrogenase-4 subunit I [Cupriavidus metallidurans CH34]
          Length = 171

 Score = 88.2 bits (217), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 40/107 (37%), Positives = 62/107 (57%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E+     P Y++E  G    ASPR +D+++V G ++  M  ALRR Y+  PEP+ V+
Sbjct: 56  CELEIHALGNPYYNIEGLGVRFVASPRHADMLLVTGPVSRHMEEALRRTYEATPEPKLVV 115

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171
           ++G C    G +  SY+       ++PVD+ VPGCPP    ++ GIL
Sbjct: 116 AVGDCGCTSGIFGESYASCGRVSNVIPVDVSVPGCPPPPIDILRGIL 162


>gi|150402630|ref|YP_001329924.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanococcus
           maripaludis C7]
 gi|150033660|gb|ABR65773.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanococcus
           maripaludis C7]
          Length = 156

 Score = 88.2 bits (217), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 39/116 (33%), Positives = 69/116 (59%), Gaps = 3/116 (2%)

Query: 59  TFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMP 118
           T G   C +E++    P+YD+E++G     +PR++DV++V G +T      L  +Y++ P
Sbjct: 18  TGGCNGCDIEVVSCLAPKYDIEQYGIYVHNNPREADVLVVTGPVTGAWEKRLLEIYEKTP 77

Query: 119 EPRYVISMGSCANGGGYYHYSYSVVRG-CDRIVPVDIYVPGCPPTAEALIYGILLL 173
           EP+ VI++G+CA  GG +   +  + G  D ++PVD  +PGCPP    +I  ++ +
Sbjct: 78  EPKIVIAVGACALSGGIFKEGH--IHGPVDSVIPVDAKLPGCPPRPSEIISAVVAI 131


>gi|167572898|ref|ZP_02365772.1| putative hydrogenase subunit [Burkholderia oklahomensis C6786]
          Length = 174

 Score = 88.2 bits (217), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 42/106 (39%), Positives = 62/106 (58%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E+     P Y++E  G    ASPR +D++++ G LT  M  A+R  YD  P P+ V+
Sbjct: 57  CELELHALGNPYYNIEGLGIKFVASPRHADMLLITGPLTLNMRDAVRLAYDATPAPKLVV 116

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGI 170
           + G CA  GG +  SY+V    ++ VPVD+ +PGCPP    L+ GI
Sbjct: 117 AAGDCACTGGVFADSYAVCGPLEKRVPVDLTIPGCPPRPIDLLRGI 162


>gi|5734540|emb|CAB52769.1| hydrogenase small subunit [Methanothermobacter thermautotrophicus]
          Length = 148

 Score = 88.2 bits (217), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 45/133 (33%), Positives = 75/133 (56%), Gaps = 4/133 (3%)

Query: 43  VDQLVTWARTGSL---MWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVA 99
           +D L +  R  S+   +  T G   C +E++    PRYDLE++G     +PR++DV++V 
Sbjct: 2   LDALKSILRKTSIHVCLVNTGGCNGCDIEVLALLSPRYDLEQYGIYVHQNPREADVILVT 61

Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS-YSVVRGCDRIVPVDIYVPG 158
           G +T +    L+R+Y + PEP+ V+++G+C   G  ++    SV       +PVD+ VPG
Sbjct: 62  GAVTEQWREKLQRIYSKAPEPKIVVALGNCPISGDVFNQEGGSVYAPVSDFIPVDVEVPG 121

Query: 159 CPPTAEALIYGIL 171
           CPP    ++  IL
Sbjct: 122 CPPRPFEILEAIL 134


>gi|303325434|ref|ZP_07355877.1| hydrogenase subunit [Desulfovibrio sp. 3_1_syn3]
 gi|302863350|gb|EFL86281.1| hydrogenase subunit [Desulfovibrio sp. 3_1_syn3]
          Length = 271

 Score = 88.2 bits (217), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 43/103 (41%), Positives = 64/103 (62%), Gaps = 3/103 (2%)

Query: 77  YDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY 136
           YDL RFG    ASPR +D ++V G +T  M  AL   +  MPEPR ++++G+CA  GG +
Sbjct: 168 YDLGRFGIEFTASPRHADGLVVTGPVTENMRRALLDTWAAMPEPRLLVAVGACAISGGLF 227

Query: 137 HYSYSVVRGCD---RIVPVDIYVPGCPPTAEALIYGILLLQKK 176
             S     G D   R+ PVD++VPGCPP   +++ G+L L+++
Sbjct: 228 RESPQCHGGLDGGGRLPPVDVFVPGCPPNPWSILDGLLSLRRR 270


>gi|37718833|gb|AAR01704.1| putative NADH ubiquinone oxidoreductase [Oryza sativa Japonica
           Group]
          Length = 97

 Score = 88.2 bits (217), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 44/83 (53%), Positives = 54/83 (65%), Gaps = 4/83 (4%)

Query: 47  VTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKM 106
           + WAR GS+  MTFGLAC AVEMM A   RYD +RFG     SPRQSD MI+ GTLTNKM
Sbjct: 1   MNWARRGSIWPMTFGLACFAVEMMHAGASRYDFDRFGVIFHPSPRQSDCMIITGTLTNKM 60

Query: 107 ASALRRVYDQMPEPRYVISMGSC 129
             ALR+       P + +++ +C
Sbjct: 61  VPALRKAL----IPTFNVNLETC 79


>gi|221198810|ref|ZP_03571855.1| hydrogenase-4 component I [Burkholderia multivorans CGD2M]
 gi|221205071|ref|ZP_03578087.1| hydrogenase-4 component I [Burkholderia multivorans CGD2]
 gi|221174862|gb|EEE07293.1| hydrogenase-4 component I [Burkholderia multivorans CGD2]
 gi|221181261|gb|EEE13663.1| hydrogenase-4 component I [Burkholderia multivorans CGD2M]
          Length = 171

 Score = 88.2 bits (217), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 41/107 (38%), Positives = 63/107 (58%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E+   + P Y++E  G    ASPR +D+++V G +T  M +A+   YD  P P+ V+
Sbjct: 57  CELEIHALNNPYYNIEGLGIKFVASPRHADLLLVTGPVTLNMKAAVLAAYDATPAPKLVV 116

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171
           + G CA  GG +  SY+V      ++PVD+ +PGCPP    L+ GIL
Sbjct: 117 AAGECACTGGIFADSYAVCGPVSSVLPVDVTIPGCPPPPIDLLRGIL 163


>gi|289192361|ref|YP_003458302.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanocaldococcus
           sp. FS406-22]
 gi|288938811|gb|ADC69566.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanocaldococcus
           sp. FS406-22]
          Length = 148

 Score = 88.2 bits (217), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 44/124 (35%), Positives = 74/124 (59%), Gaps = 8/124 (6%)

Query: 55  LMWMTFGLACCAVEMMQASM-PRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRV 113
           ++  T G   C +E++ A   P YD E++      +PR++D+++V G +T  +A +LR++
Sbjct: 14  MLVYTGGCNACDIEVVNAIFSPFYDAEQYNVFLTFNPREADILVVTGCVTKVVAESLRKI 73

Query: 114 YDQMPEPRYVISMGSCANGGGYYHY-------SYSVVRGCDRIVPVDIYVPGCPPTAEAL 166
           Y+++PEP+ V+++G+CA  GG Y         S  V    + I+PVD+ VPGC P  E +
Sbjct: 74  YEKIPEPKAVVAVGACALMGGVYKNIGGDLGTSDFVAGPVENIIPVDVKVPGCAPRPEDI 133

Query: 167 IYGI 170
           I GI
Sbjct: 134 IAGI 137


>gi|296136161|ref|YP_003643403.1| hypothetical protein Tint_1703 [Thiomonas intermedia K12]
 gi|295796283|gb|ADG31073.1| hypothetical protein Tint_1703 [Thiomonas intermedia K12]
          Length = 273

 Score = 88.2 bits (217), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 40/98 (40%), Positives = 58/98 (59%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C  E+     P Y+L R G     SPR +D+++V G +T  M   L R Y+ MP+PR+V+
Sbjct: 149 CESELQALLNPFYNLHRLGVFFTPSPRFADLLLVTGPVTAAMREPLLRTYEAMPQPRWVM 208

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162
           + G+CA GG      Y+   G D I+PVD+++PGCPP 
Sbjct: 209 AAGTCATGGSTNGGGYACHEGLDGILPVDVWLPGCPPN 246


>gi|319957574|ref|YP_004168837.1| NADH ubiquinone oxidoreductase 20 kda subunit [Nitratifractor
           salsuginis DSM 16511]
 gi|319419978|gb|ADV47088.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Nitratifractor
           salsuginis DSM 16511]
          Length = 170

 Score = 88.2 bits (217), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 38/107 (35%), Positives = 63/107 (58%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C  E    S P YDLER G    ASPR +D+M+++G LT  M   +   ++Q+PEP++ I
Sbjct: 56  CEAECNALSNPYYDLERLGIHFVASPRHADLMLLSGVLTFNMLPHVLDAWEQIPEPKWCI 115

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171
           ++G C      + ++++V       +PV  ++PGCPP+ + +I G+L
Sbjct: 116 TLGDCPAMQAPFEHTFAVTAPASEHLPVAHHIPGCPPSPDRIIEGLL 162


>gi|148259621|ref|YP_001233748.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Acidiphilium
           cryptum JF-5]
 gi|326402829|ref|YP_004282910.1| putative NADH ubiquinone oxidoreductase [Acidiphilium multivorum
           AIU301]
 gi|146401302|gb|ABQ29829.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Acidiphilium
           cryptum JF-5]
 gi|325049690|dbj|BAJ80028.1| putative NADH ubiquinone oxidoreductase [Acidiphilium multivorum
           AIU301]
          Length = 264

 Score = 88.2 bits (217), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 44/117 (37%), Positives = 69/117 (58%), Gaps = 2/117 (1%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C  E+   + P Y+L R G     SPR +D+++V G +T  M   LRR ++ MP PR+V+
Sbjct: 141 CESELQALNNPFYNLHRLGIFFTPSPRFADLLLVTGPVTRAMLEPLRRTWEAMPAPRWVM 200

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILL-LQKKIRRV 180
           + G+CA  GG        + G +  +PVD+Y+PGCPP   A+I  +L+ L ++ +RV
Sbjct: 201 ASGTCAVSGGIAP-GGPCLSGLEEALPVDLYLPGCPPNPAAIIEALLMFLGRRAQRV 256


>gi|296109474|ref|YP_003616423.1| hypothetical protein Metin_0794 [Methanocaldococcus infernus ME]
 gi|295434288|gb|ADG13459.1| hypothetical protein Metin_0794 [Methanocaldococcus infernus ME]
          Length = 154

 Score = 88.2 bits (217), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 45/125 (36%), Positives = 74/125 (59%), Gaps = 8/125 (6%)

Query: 55  LMWMTFGLACCAVEMMQASM-PRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRV 113
           ++  T G   C +E + A   P YD E++      +PR++D++IV+G +T  +  +LR++
Sbjct: 21  MLVYTGGCNGCDIEAVNAVFSPYYDAEQYNVFLTFNPRETDILIVSGCVTKFVKESLRKI 80

Query: 114 YDQMPEPRYVISMGSCANGGGYYHY-------SYSVVRGCDRIVPVDIYVPGCPPTAEAL 166
           Y+++PEP+ V+++GSCA  GG Y         S  V    + I+PVD+ VPGC P  E +
Sbjct: 81  YEKIPEPKAVVAIGSCALTGGVYKNIGGDLGTSDFVAGPVENIIPVDVKVPGCAPRPEDI 140

Query: 167 IYGIL 171
           I GI+
Sbjct: 141 ISGIV 145


>gi|313904888|ref|ZP_07838260.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Eubacterium
           cellulosolvens 6]
 gi|313470321|gb|EFR65651.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Eubacterium
           cellulosolvens 6]
          Length = 156

 Score = 87.8 bits (216), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 47/122 (38%), Positives = 74/122 (60%), Gaps = 6/122 (4%)

Query: 61  GLAC--CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMP 118
           G +C  C +E++ +  P YD ERFG      P Q+D+ +V G + ++    ++++YDQMP
Sbjct: 15  GASCNGCDIEVLASLTPVYDAERFGVENTGDPMQADIFLVTGGINDQCYDVVKQLYDQMP 74

Query: 119 EPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQ 174
            P+ V+++G CA  GG +  +Y +  G D  +PVDIYVPGC    +A+I GI+    L Q
Sbjct: 75  RPKVVVAVGVCACTGGIFKDAYGIHGGVDTCIPVDIYVPGCAARPQAIIDGIVKAVELFQ 134

Query: 175 KK 176
           K+
Sbjct: 135 KR 136


>gi|167565804|ref|ZP_02358720.1| putative hydrogenase subunit [Burkholderia oklahomensis EO147]
          Length = 174

 Score = 87.8 bits (216), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 42/106 (39%), Positives = 62/106 (58%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E+     P Y++E  G    ASPR +D++++ G LT  M  A+R  YD  P P+ V+
Sbjct: 57  CELELHALGNPYYNIEGLGIKFVASPRHADMLLITGPLTLNMRDAVRLAYDATPAPKLVV 116

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGI 170
           + G CA  GG +  SY+V    ++ VPVD+ +PGCPP    L+ GI
Sbjct: 117 AAGDCACTGGVFADSYAVCGPLEKRVPVDLTIPGCPPRPIDLLCGI 162


>gi|296161106|ref|ZP_06843916.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Burkholderia sp.
           Ch1-1]
 gi|295888629|gb|EFG68437.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Burkholderia sp.
           Ch1-1]
          Length = 176

 Score = 87.8 bits (216), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 41/107 (38%), Positives = 63/107 (58%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E+   S P Y++E  G    ASPR +D+++V G LT  M  A+ + Y+  P P+ V+
Sbjct: 57  CELEINALSNPYYNIEGLGIRIVASPRHADMLLVTGPLTLNMREAVWQAYEATPHPKLVV 116

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171
           + G CA  GG +  SY+V      ++PVD+ +PGCPP    ++ GIL
Sbjct: 117 AAGECACTGGMFRDSYAVCGPLSTLLPVDVTIPGCPPPPIDILRGIL 163


>gi|320100262|ref|YP_004175854.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfurococcus
           mucosus DSM 2162]
 gi|319752614|gb|ADV64372.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfurococcus
           mucosus DSM 2162]
          Length = 152

 Score = 87.8 bits (216), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 45/120 (37%), Positives = 68/120 (56%), Gaps = 10/120 (8%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E++ A  P +D ERFG     SPR +DV+++ G +T +    +    +  P PR +I
Sbjct: 18  CDIEILDALTPFHDAERFGVKLVGSPRHADVILMTGPVTLETLPKVLNAIEAAPRPRIII 77

Query: 125 SMGSCANGGGYYHYSYSVVRGC--------DRIVPVDI--YVPGCPPTAEALIYGILLLQ 174
           ++GSC  GGG +H +YS + G         +R + VD   YVPGCP   EAL+Y I L++
Sbjct: 78  ALGSCGVGGGIWHDTYSTIGGIKGLEKMLKERGIRVDAIYYVPGCPIRPEALLYAIALIK 137


>gi|325529420|gb|EGD06341.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Burkholderia sp.
           TJI49]
          Length = 273

 Score = 87.8 bits (216), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 41/98 (41%), Positives = 57/98 (58%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C  E+     P Y+L R G     SPR +DV++V G +T  M   L   ++ MP PR+VI
Sbjct: 150 CESELQALDNPFYNLHRLGIFFTPSPRFADVLLVTGPVTKAMRQPLLETWEAMPSPRWVI 209

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162
           + G+CA  GG    +Y+   G D ++PVDIY+PGCPP 
Sbjct: 210 ATGTCAVSGGMTGGNYACGTGLDGVLPVDIYLPGCPPN 247


>gi|218513798|ref|ZP_03510638.1| NADH-ubiquinone oxidoreductase protein, chain B [Rhizobium etli
           8C-3]
          Length = 77

 Score = 87.8 bits (216), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 39/63 (61%), Positives = 53/63 (84%), Gaps = 1/63 (1%)

Query: 117 MPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKK 176
           MPEPR+VI+MG+CA  GG Y+ +Y+VV+G +  VPVD++VPGCPP  EAL++G LLLQ+K
Sbjct: 1   MPEPRWVIAMGTCAISGGVYN-TYAVVQGSETFVPVDVHVPGCPPRPEALMHGFLLLQEK 59

Query: 177 IRR 179
           I+R
Sbjct: 60  IKR 62


>gi|152991860|ref|YP_001357581.1| Ni-Fe hydrogenase, small subunit HycG [Sulfurovum sp. NBC37-1]
 gi|151423721|dbj|BAF71224.1| Ni-Fe hydrogenase, small subunit HycG [Sulfurovum sp. NBC37-1]
          Length = 168

 Score = 87.8 bits (216), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 43/113 (38%), Positives = 63/113 (55%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C  E    S P YDLER G    ASPR +DVM++ G +T  M   +   Y Q+PEP++VI
Sbjct: 56  CEAECNALSNPYYDLERLGIYFVASPRHADVMLLNGLMTFNMTPHVLDAYKQIPEPKWVI 115

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
           ++G+C      +  +++V       +PV  ++PGCPP    +I G+L   KKI
Sbjct: 116 TLGACPVMEAPFEKTFAVKAPAADHLPVAHHIPGCPPEPLEIIRGLLEFLKKI 168


>gi|20093902|ref|NP_613749.1| Ni,Fe-hydrogenase III small subunit [Methanopyrus kandleri AV19]
 gi|19886843|gb|AAM01679.1| Ni,Fe-hydrogenase III small subunit [Methanopyrus kandleri AV19]
          Length = 162

 Score = 87.8 bits (216), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 47/137 (34%), Positives = 82/137 (59%), Gaps = 4/137 (2%)

Query: 39  LVTSVDQLVTWARTGSL---MWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDV 95
           L +++ +L  + R+ S+   +  T G   C +E++     RYDLE++G     +PR+SDV
Sbjct: 3   LKSALKKLKGFVRSRSIHVTVVNTGGCNGCDIEILACYTYRYDLEQYGIYYHNNPRKSDV 62

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR-IVPVDI 154
           +IV G +T +    L ++Y ++PEP+ V+++G+CA  GG ++     V G  R ++PVD 
Sbjct: 63  LIVTGPVTYQWRDKLVKLYHKVPEPKAVVAVGTCACSGGIFNQRGGRVCGPVREVIPVDA 122

Query: 155 YVPGCPPTAEALIYGIL 171
            VPGCPP  E ++  ++
Sbjct: 123 EVPGCPPRPEEIVSAVV 139


>gi|320101917|ref|YP_004177508.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Isosphaera pallida
           ATCC 43644]
 gi|319749199|gb|ADV60959.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Isosphaera pallida
           ATCC 43644]
          Length = 257

 Score = 87.8 bits (216), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 39/101 (38%), Positives = 62/101 (61%)

Query: 77  YDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY 136
           +DL RFG    ASPR +D +++ G +T  M  AL + ++ +P P+ VI++G+CA  GG +
Sbjct: 151 FDLGRFGIQFVASPRHADGLLITGPVTKNMVLALEKSHEAVPAPKIVIAVGACAISGGPF 210

Query: 137 HYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
                   G D ++PVD+Y+PGCPP    ++ G+L L  K+
Sbjct: 211 AGHAEQSNGADDVLPVDLYIPGCPPHPLTILDGLLRLLDKL 251


>gi|218884334|ref|YP_002428716.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Desulfurococcus
           kamchatkensis 1221n]
 gi|218765950|gb|ACL11349.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Desulfurococcus
           kamchatkensis 1221n]
          Length = 156

 Score = 87.8 bits (216), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 43/125 (34%), Positives = 70/125 (56%), Gaps = 10/125 (8%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E++ A  P +D ERFG     SPR +DV+++ G +T +    +    +  P PR ++
Sbjct: 22  CDIEILDALTPFHDAERFGVKLVGSPRHADVILLTGPITIETLPKVINAIEAAPRPRIIV 81

Query: 125 SMGSCANGGGYYHYSYSVVRGC--------DRIVPVD--IYVPGCPPTAEALIYGILLLQ 174
           ++GSC  GGG +H +YS + G         ++ + VD   YVPGCP   EAL+Y I L++
Sbjct: 82  ALGSCGVGGGIWHDTYSTIGGVRSLKKILDEKGIQVDGIYYVPGCPIRPEALLYAIALIK 141

Query: 175 KKIRR 179
             + +
Sbjct: 142 GLVSK 146


>gi|304314558|ref|YP_003849705.1| energy-converting hydrogenase A, subunit N [Methanothermobacter
           marburgensis str. Marburg]
 gi|302588017|gb|ADL58392.1| energy-converting hydrogenase A, subunit N [Methanothermobacter
           marburgensis str. Marburg]
          Length = 148

 Score = 87.8 bits (216), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 45/133 (33%), Positives = 74/133 (55%), Gaps = 4/133 (3%)

Query: 43  VDQLVTWARTGSL---MWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVA 99
           +D L +  R  S+   +  T G   C +E++    PRYDLE++G     +PR++DV++V 
Sbjct: 2   LDALKSILRKTSIHVCLVNTGGCNGCDIEVLALLSPRYDLEQYGIYVHQNPREADVILVT 61

Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS-YSVVRGCDRIVPVDIYVPG 158
           G +T +    L+R+Y + PEP+ V+++G+C   G  ++    SV       +PVD  VPG
Sbjct: 62  GAVTEQWREKLQRIYSKAPEPKIVVALGNCPISGDVFNQEGGSVYAPVSDFIPVDAEVPG 121

Query: 159 CPPTAEALIYGIL 171
           CPP    ++  IL
Sbjct: 122 CPPRPSEILEAIL 134


>gi|91779764|ref|YP_554972.1| putative hydrogenase/oxidoreductase subunit [Burkholderia
           xenovorans LB400]
 gi|91692424|gb|ABE35622.1| putative hydrogenase/oxidoreductase subunit [Burkholderia
           xenovorans LB400]
          Length = 177

 Score = 87.4 bits (215), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 41/107 (38%), Positives = 63/107 (58%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E+   S P Y++E  G    ASPR +D+++V G LT  M  A+ + Y+  P P+ V+
Sbjct: 57  CELEINALSNPYYNIEGLGIRFVASPRHADMLLVTGPLTLNMREAVWQAYEATPHPKLVV 116

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171
           + G CA  GG +  SY+V      ++PVD+ +PGCPP    ++ GIL
Sbjct: 117 ATGECACTGGVFRDSYAVCGPLSTLLPVDVTIPGCPPPPIDILRGIL 163


>gi|15678425|ref|NP_275540.1| formate hydrogenlyase, subunit 7 [Methanothermobacter
           thermautotrophicus str. Delta H]
 gi|2621459|gb|AAB84903.1| formate hydrogenlyase, subunit 7 [Methanothermobacter
           thermautotrophicus str. Delta H]
          Length = 148

 Score = 87.0 bits (214), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 45/133 (33%), Positives = 74/133 (55%), Gaps = 4/133 (3%)

Query: 43  VDQLVTWARTGSL---MWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVA 99
           +D L +  R  S+   +  T G   C +E++    PRYDLE++G     +PR++DV++V 
Sbjct: 2   LDALKSILRKTSIHVCLVNTGGCNGCDIEVLALLSPRYDLEQYGIYVHQNPREADVILVT 61

Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS-YSVVRGCDRIVPVDIYVPG 158
           G +T +    L+R+Y + PEP+ V+++G+C   G  ++    SV       +PVD  VPG
Sbjct: 62  GAVTEQWREKLQRIYRKAPEPKIVVALGNCPISGDVFNQEGGSVYAPVSDFIPVDAEVPG 121

Query: 159 CPPTAEALIYGIL 171
           CPP    ++  IL
Sbjct: 122 CPPRPSEILEAIL 134


>gi|297620123|ref|YP_003708228.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanococcus voltae
           A3]
 gi|297379100|gb|ADI37255.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanococcus voltae
           A3]
          Length = 153

 Score = 87.0 bits (214), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 38/113 (33%), Positives = 68/113 (60%), Gaps = 1/113 (0%)

Query: 59  TFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMP 118
           T G   C +E++ A  PRYD+E++G     +PR++DV++V G +       L+ ++D+ P
Sbjct: 18  TGGCNGCDIEVVSALAPRYDIEQYGIYVHNNPREADVLVVTGPVVLPWKKRLKEIFDKTP 77

Query: 119 EPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171
           EP+ V+++G+CA   G +   + V    D+I+PV+  +PGCPP    +I  ++
Sbjct: 78  EPKVVVAVGACALSCGIFKEGH-VYGPVDKIIPVNAKLPGCPPRPSEIIEAVV 129


>gi|212223420|ref|YP_002306656.1| Hydrogenase 4, component I or formate hydrogen lyase, subunit 7
           [Thermococcus onnurineus NA1]
 gi|212008377|gb|ACJ15759.1| Hydrogenase 4, component I or formate hydrogen lyase, subunit 7
           [Thermococcus onnurineus NA1]
          Length = 266

 Score = 86.7 bits (213), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 46/137 (33%), Positives = 76/137 (55%), Gaps = 23/137 (16%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQM-PEPRYV 123
           C +E++    P YD ER G     SPR +D ++V+G LT +   A++  Y+ M P+PR V
Sbjct: 20  CDIEILDVLTPYYDAERLGIKLVPSPRHADALLVSGPLTRQTYYAVKAAYEAMPPKPRIV 79

Query: 124 ISMGSCANGGGYYHYSYSVV-----RGCDRI-------------VPVDIYVPGCPPTAEA 165
           +++G+CA+ GG ++  Y +      RG DR+                D+Y+PGCPP+ E 
Sbjct: 80  VAIGTCASSGGIFYNGYPIYNPNPERGSDRLRTGGIEVLLAEYGKKPDMYIPGCPPSPEE 139

Query: 166 LIYGILLL----QKKIR 178
           ++YG+  L    +KK++
Sbjct: 140 ILYGLAQLLGLKEKKMK 156


>gi|297619767|ref|YP_003707872.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanococcus voltae
           A3]
 gi|297378744|gb|ADI36899.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanococcus voltae
           A3]
          Length = 147

 Score = 86.7 bits (213), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 45/134 (33%), Positives = 79/134 (58%), Gaps = 13/134 (9%)

Query: 55  LMWMTFGLACCAVEMMQASM-PRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRV 113
           ++  T G   C +E++   + P YD E++      +PR++D+++V G +T  + ++L+++
Sbjct: 14  MLVYTGGCNGCDIEVVNCVLSPYYDAEQYNVFLTWNPREADILVVTGCVTKTITASLKKI 73

Query: 114 YDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCD-------RIVPVDIYVPGCPPTAEAL 166
           Y++MPEP+ V++ G+CA  GG Y    + +   D        I+PVD+ VPGCPP  E +
Sbjct: 74  YEEMPEPKAVVAAGACALMGGVYGNIGADLGTSDFIDGPVKNIIPVDVNVPGCPPRPEDV 133

Query: 167 IYGIL-----LLQK 175
           I GI+     LL+K
Sbjct: 134 ITGIVKAIPKLLEK 147


>gi|167898184|ref|ZP_02485586.1| putative hydrogenase subunit [Burkholderia pseudomallei 7894]
          Length = 158

 Score = 86.7 bits (213), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 39/97 (40%), Positives = 58/97 (59%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E+     P Y++E  G    ASPR +D++++ G LT  M  A+R  YD  P P+ V+
Sbjct: 57  CELELHALGNPYYNIEGLGIKFVASPRHADMLLITGPLTLNMRDAVRLAYDATPAPKLVV 116

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP 161
           + G CA  GG +  SY+V    + +VPVD+ +PGCPP
Sbjct: 117 AAGDCACTGGVFAGSYAVCGPIETLVPVDVAIPGCPP 153


>gi|254173900|ref|ZP_04880571.1| hydrogenase-4 component I [Thermococcus sp. AM4]
 gi|214032149|gb|EEB72980.1| hydrogenase-4 component I [Thermococcus sp. AM4]
          Length = 187

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 42/130 (32%), Positives = 71/130 (54%), Gaps = 15/130 (11%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E++    PR D+ER G     SPR +D +   G +T +    +      +P+P+ V+
Sbjct: 19  CDIEVLNMFAPRNDVERLGIKLVGSPRHADAIAFTGPITRECLPKVIDALTAVPDPKVVL 78

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIV-----------PVDIYVPGCPPTAEALIYGIL-- 171
           ++G+CA GGG ++ +YSV+ G   +            P  +++PGCPP  EA+IYG+   
Sbjct: 79  AIGACACGGGIWYDTYSVIGGIKELYKILKEEYNIEPPATVFIPGCPPKPEAIIYGVAVA 138

Query: 172 --LLQKKIRR 179
             +L+KK R+
Sbjct: 139 RGMLEKKQRK 148


>gi|83717494|ref|YP_439462.1| formate hydrogenlyase subunit 7 [Burkholderia thailandensis E264]
 gi|167577905|ref|ZP_02370779.1| Formate hydrogenlyase subunit 7 [Burkholderia thailandensis TXDOH]
 gi|167616030|ref|ZP_02384665.1| Formate hydrogenlyase subunit 7 [Burkholderia thailandensis Bt4]
 gi|257142585|ref|ZP_05590847.1| formate hydrogenlyase subunit 7 [Burkholderia thailandensis E264]
 gi|83651319|gb|ABC35383.1| Formate hydrogenlyase subunit 7 [Burkholderia thailandensis E264]
          Length = 174

 Score = 86.3 bits (212), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 42/114 (36%), Positives = 65/114 (57%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E+     P Y++E  G    ASPR +D++++ G LT  M  A+R  YD  P P+ V+
Sbjct: 57  CELELNALGNPYYNIEGLGIKFVASPRHADMLLITGPLTLNMRDAVRLAYDATPAPKLVV 116

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           + G CA  GG +  SY+V    + +VPVD+ + GCPP    L+ GI    +++R
Sbjct: 117 AAGDCACTGGVFAGSYAVCGPVETLVPVDVAIAGCPPRPIDLLRGIRGALERVR 170


>gi|222054796|ref|YP_002537158.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Geobacter sp.
           FRC-32]
 gi|221564085|gb|ACM20057.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Geobacter sp.
           FRC-32]
          Length = 256

 Score = 86.3 bits (212), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 42/101 (41%), Positives = 60/101 (59%)

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           G   C  ++   S   +DL RFG    ASPR +D ++V G +T  M  AL + Y+ +P P
Sbjct: 136 GCNACEADVNVLSTVAWDLGRFGIQFVASPRHADGILVTGPVTENMREALLKTYEAVPAP 195

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP 161
           + VI+ G+CA  GG +  S  V  G D ++PVD+Y+PGCPP
Sbjct: 196 KIVIASGACAINGGPFMDSPEVHNGVDGLLPVDLYIPGCPP 236


>gi|212224173|ref|YP_002307409.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit [Thermococcus
           onnurineus NA1]
 gi|212009130|gb|ACJ16512.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit [Thermococcus
           onnurineus NA1]
          Length = 191

 Score = 86.3 bits (212), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 39/117 (33%), Positives = 64/117 (54%), Gaps = 11/117 (9%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E++    PR D+ER G     SPR +D +   G +T +    +      +PEP+ V+
Sbjct: 19  CDIEILNIFAPRNDVERLGIKLVGSPRHADAIAFTGPITRECLPKVIDALKAVPEPKVVL 78

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIV-----------PVDIYVPGCPPTAEALIYGI 170
           ++G+CA GGG ++ +YSV+ G   +            P  +++PGCPP  EA+IYG+
Sbjct: 79  AIGACACGGGIWYDTYSVIGGVKELYRILKEEYNMEPPATVFIPGCPPKPEAIIYGV 135


>gi|288560655|ref|YP_003424141.1| energy-converting hydrogenase A subunit N EhaN [Methanobrevibacter
           ruminantium M1]
 gi|288543365|gb|ADC47249.1| energy-converting hydrogenase A subunit N EhaN [Methanobrevibacter
           ruminantium M1]
          Length = 153

 Score = 86.3 bits (212), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 38/108 (35%), Positives = 63/108 (58%), Gaps = 1/108 (0%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C VE++    PRYDLE++G     +PR++DV++V G +T +    LRR+Y + PEP+ V+
Sbjct: 27  CDVELVALLSPRYDLEQYGIYVHNNPREADVLLVTGAVTEQWRDNLRRIYAKAPEPKIVV 86

Query: 125 SMGSCANGGGYY-HYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171
           ++G+C   G  +      V+      +PVD  +PGCPP    ++  +L
Sbjct: 87  AVGNCPQSGDVFAQEGGRVLAPVSDFIPVDAAIPGCPPRPSEILEAVL 134


>gi|113868177|ref|YP_726666.1| formate hydrogenlyase subunit 7 [Ralstonia eutropha H16]
 gi|113526953|emb|CAJ93298.1| formate hydrogenlyase subunit 7 [Ralstonia eutropha H16]
          Length = 174

 Score = 86.3 bits (212), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 42/120 (35%), Positives = 65/120 (54%), Gaps = 3/120 (2%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E+     P Y++E  G    ASPR +D+++V G ++  M  AL R Y   PEP+ V+
Sbjct: 57  CELEIHALGNPYYNIEGLGIKFVASPRHADMLLVTGPVSRHMEEALLRTYAATPEPKLVV 116

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           ++G C   GG +  SY+       ++PVDI VPGCPP    ++  IL     +R+ G  +
Sbjct: 117 AIGDCGCTGGIFGESYASCGRVANVIPVDITVPGCPPPPIEILRAIL---SAVRQTGATR 173


>gi|164513234|emb|CAP11710.1| NADH dehydrogenase subunit K [Acorus calamus]
 gi|164513236|emb|CAP11711.1| NADH dehydrogenase subunit K [Acorus gramineus]
          Length = 72

 Score = 86.3 bits (212), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 35/71 (49%), Positives = 54/71 (76%)

Query: 58  MTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQM 117
           + +G +CC +E       R+D +R+G  PR+SPRQ+D+++ AGT+T KMA +L R+Y+QM
Sbjct: 2   LLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQM 61

Query: 118 PEPRYVISMGS 128
           PEP+YVI+MG+
Sbjct: 62  PEPKYVIAMGA 72


>gi|114775564|ref|ZP_01451132.1| hydrogenase subunit [Mariprofundus ferrooxydans PV-1]
 gi|114553675|gb|EAU56056.1| hydrogenase subunit [Mariprofundus ferrooxydans PV-1]
          Length = 169

 Score = 85.9 bits (211), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 41/108 (37%), Positives = 64/108 (59%), Gaps = 1/108 (0%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E+   +   YD+ERFG    ASPR +D+++V G ++  M  AL   Y+   +P+ V+
Sbjct: 56  CELEIHATNNAYYDIERFGIHFTASPRFADMLLVTGPVSVNMRKALEMTYNATSDPKLVV 115

Query: 125 SMGSCA-NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171
           +MG CA N G +   +Y++      I+PVD+ + GCPPT   +I GIL
Sbjct: 116 AMGDCAVNCGVFGRDNYAIAGAVSDIIPVDVVIHGCPPTPTDIIRGIL 163


>gi|296241798|ref|YP_003649285.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Thermosphaera
           aggregans DSM 11486]
 gi|296094382|gb|ADG90333.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Thermosphaera
           aggregans DSM 11486]
          Length = 156

 Score = 85.9 bits (211), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 45/128 (35%), Positives = 70/128 (54%), Gaps = 14/128 (10%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E++    P +D ERFG     SPR +D +++ G +T +    +    +  P PR VI
Sbjct: 22  CDIEILDVLTPFHDAERFGVKLVTSPRHADAILLTGPITAEALPKVINAIEAAPRPRVVI 81

Query: 125 SMGSCANGGGYYHYSYSVVRGC--------DRIVPVDI--YVPGCPPTAEALIYGIL--- 171
           ++GSC  GGG +H +YS + G         ++ V VD   YVPGCP   EA++Y +    
Sbjct: 82  ALGSCGVGGGIWHDTYSTIGGIKGLQKILEEKGVKVDAFYYVPGCPIRPEAILYAVALFK 141

Query: 172 -LLQKKIR 178
            L+QKK++
Sbjct: 142 GLVQKKVK 149


>gi|303247448|ref|ZP_07333720.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfovibrio
           fructosovorans JJ]
 gi|302491144|gb|EFL51036.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfovibrio
           fructosovorans JJ]
          Length = 253

 Score = 85.5 bits (210), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 42/97 (43%), Positives = 58/97 (59%)

Query: 77  YDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY 136
           YDL RFG    ASPR +D + V G +T  M  A R  +D +P+PR  I++G+CA  GG +
Sbjct: 151 YDLGRFGIDFVASPRHADGVAVTGPVTENMYQATRDTFDAVPDPRLAIAVGACAISGGIF 210

Query: 137 HYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLL 173
             S     G   ++PVD+YVPGCPP    ++ G+L L
Sbjct: 211 AASAETRGGAPGVMPVDLYVPGCPPHPLTILDGLLRL 247


>gi|119719099|ref|YP_919594.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Thermofilum pendens
           Hrk 5]
 gi|119524219|gb|ABL77591.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Thermofilum pendens
           Hrk 5]
          Length = 245

 Score = 85.5 bits (210), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 44/119 (36%), Positives = 76/119 (63%), Gaps = 4/119 (3%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E+  A  P +D+ER G     SPR +DV++V G +T +    L+  Y+  P+P  V+
Sbjct: 30  CDIEVFDALTPYFDVERLGVKLVLSPRMADVILVTGPVTRQFLPVLKATYEAAPKPCVVV 89

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKKIRR 179
           + G+CA GGG ++ +Y    G D+++PVD+Y+PGCPP   A+++G+     +L++K++R
Sbjct: 90  ACGACACGGGIWYDTYGTAGGVDKVIPVDVYIPGCPPRPHAILHGVAVALDILEQKVKR 148


>gi|150400803|ref|YP_001324569.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanococcus
           aeolicus Nankai-3]
 gi|150013506|gb|ABR55957.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanococcus
           aeolicus Nankai-3]
          Length = 153

 Score = 85.5 bits (210), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 36/113 (31%), Positives = 66/113 (58%), Gaps = 1/113 (0%)

Query: 59  TFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMP 118
           T G   C +E++    PRYD+E++G     +PR++D++++ G +T      L  +Y++ P
Sbjct: 18  TGGCNGCDIELVSTLAPRYDIEQYGVYVHNNPREADILVITGPVTLPWKDKLVEIYEKTP 77

Query: 119 EPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171
           EP+ V+++G+CA  GG +   + +    D+ +PVD  + GCPP    +I  +L
Sbjct: 78  EPKIVVAVGACALSGGIFKEGH-IYGPVDKFIPVDAKIVGCPPRPSEIIEAVL 129


>gi|148262959|ref|YP_001229665.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Geobacter
           uraniireducens Rf4]
 gi|146396459|gb|ABQ25092.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Geobacter
           uraniireducens Rf4]
          Length = 263

 Score = 85.5 bits (210), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 41/101 (40%), Positives = 59/101 (58%)

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           G   C  ++   S   +DL RFG    ASPR +D + V G +T  M  AL + Y+ +PEP
Sbjct: 144 GCNACEADVNVLSTVGFDLGRFGIQFVASPRHADGIFVTGPVTENMREALLKTYEAVPEP 203

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP 161
           + VI+ G+CA  GG +  S     G + ++PVD+Y+PGCPP
Sbjct: 204 KIVIASGACAINGGPFIDSSEAHNGVEGLLPVDLYIPGCPP 244


>gi|119718689|ref|YP_925654.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Nocardioides sp.
           JS614]
 gi|119539350|gb|ABL83967.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Nocardioides sp.
           JS614]
          Length = 162

 Score = 85.5 bits (210), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 42/103 (40%), Positives = 58/103 (56%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E+  A  P YD ER+G    ASPR +DV++V G +T+ M   LRR  +  P PR V+
Sbjct: 51  CEIEVGGAFGPVYDAERYGARLVASPRHADVVLVTGVVTHNMLEPLRRTVEATPRPRLVL 110

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALI 167
           ++G CA   G +   Y V       V VD+ VPGCPP   A++
Sbjct: 111 AVGDCARNCGAFKGGYGVAGAVHDAVDVDLEVPGCPPEPAAIV 153


>gi|225164839|ref|ZP_03727063.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Opitutaceae
           bacterium TAV2]
 gi|224800549|gb|EEG18921.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Opitutaceae
           bacterium TAV2]
          Length = 294

 Score = 85.1 bits (209), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 35/85 (41%), Positives = 57/85 (67%)

Query: 77  YDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY 136
           +DL RFG    ASPR +D +++ G ++  M  AL++ +D +P+P+ VI+ G+CA  GG +
Sbjct: 169 WDLSRFGIQFVASPRHADGLLITGPVSQGMELALKKTWDAVPDPKLVIATGACAISGGPF 228

Query: 137 HYSYSVVRGCDRIVPVDIYVPGCPP 161
             +  ++ G   +VPVD+Y+PGCPP
Sbjct: 229 AGNPQILGGASAVVPVDLYIPGCPP 253


>gi|322420679|ref|YP_004199902.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Geobacter sp. M18]
 gi|320127066|gb|ADW14626.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Geobacter sp. M18]
          Length = 252

 Score = 85.1 bits (209), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 39/85 (45%), Positives = 54/85 (63%)

Query: 77  YDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY 136
           +D+ RFG    ASPR +D + V G +T  M  AL   YD +P P+ VI+ G+CA  GG +
Sbjct: 151 WDIGRFGLQFVASPRHADALWVTGPVTENMREALMMTYDAIPAPKLVIACGACAINGGPF 210

Query: 137 HYSYSVVRGCDRIVPVDIYVPGCPP 161
             S +   G DR++PVD+Y+PGCPP
Sbjct: 211 IGSPAAHDGVDRLLPVDLYIPGCPP 235


>gi|308513287|ref|NP_951802.3| NAD-dependent dehydrogenase subunit [Geobacter sulfurreducens PCA]
 gi|39982615|gb|AAR34075.1| NAD-dependent dehydrogenase subunit [Geobacter sulfurreducens PCA]
          Length = 229

 Score = 85.1 bits (209), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 43/118 (36%), Positives = 64/118 (54%)

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           G   C  +    S   +DL RFG    ASPR +D + V G +T  M  AL   ++ +P P
Sbjct: 110 GCNACEADTNVLSTIGWDLGRFGIQFVASPRHADGLWVTGPVTENMREALLMTWEAIPAP 169

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           + V++ G+CA GGG +  S     G   I+PVD+++PGCPP    ++ G+L L  +I 
Sbjct: 170 KIVVACGACAIGGGPFADSPETHNGVADILPVDLFIPGCPPHPATILDGLLRLIGRIE 227


>gi|118578783|ref|YP_900033.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Pelobacter
           propionicus DSM 2379]
 gi|118501493|gb|ABK97975.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Pelobacter
           propionicus DSM 2379]
          Length = 252

 Score = 85.1 bits (209), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 43/118 (36%), Positives = 65/118 (55%)

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           G   C  +    S   +DL RFG    ASPR +D + + G ++  M  AL   Y  +P+P
Sbjct: 135 GCNACEADTNVLSTIGWDLGRFGIQFVASPRHADGLFITGPVSENMRLALLDTYAAIPDP 194

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           + VI  G+CA  GG +     V  G D ++ VD+Y+PGCPP+   ++ G+L L ++IR
Sbjct: 195 KLVIVTGACAINGGPFKDHDEVCNGADGLLAVDLYIPGCPPSPLTILDGLLRLIRRIR 252


>gi|86160078|ref|YP_466863.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|85776589|gb|ABC83426.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Anaeromyxobacter
           dehalogenans 2CP-C]
          Length = 256

 Score = 85.1 bits (209), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 45/121 (37%), Positives = 69/121 (57%), Gaps = 3/121 (2%)

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           G + C  E+  +   ++D+ RFG    ASPR +D ++V G +T  M  ALR+ ++ +P P
Sbjct: 136 GCSGCEAELNASGNIQFDVGRFGVQFVASPRHADGLVVTGPVTENMRLALRQTWEAVPAP 195

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRI---VPVDIYVPGCPPTAEALIYGILLLQKKI 177
           R VI++G+CA  GG +  S     G       +PVD+YVPGCPP     + GIL L  ++
Sbjct: 196 RIVIAVGACAISGGPFAGSPVTCGGAAAALDGIPVDLYVPGCPPHPITFLDGILRLLGRL 255

Query: 178 R 178
           +
Sbjct: 256 K 256


>gi|255565794|ref|XP_002523886.1| NADH-ubiquinone oxidoreductase I subunit j, putative [Ricinus
           communis]
 gi|223536816|gb|EEF38455.1| NADH-ubiquinone oxidoreductase I subunit j, putative [Ricinus
           communis]
          Length = 188

 Score = 84.7 bits (208), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 39/75 (52%), Positives = 55/75 (73%), Gaps = 1/75 (1%)

Query: 106 MASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPVDIYVPGCPPTAE 164
           MA +L R+Y+Q+PEP+YVI+MG+C   GG +   SYS +RG D+++PVD Y+ GCPP  E
Sbjct: 1   MAPSLVRLYEQIPEPKYVIAMGACTITGGMFSTDSYSTIRGVDKLIPVDAYLSGCPPKPE 60

Query: 165 ALIYGILLLQKKIRR 179
           A+I  I  L+KK+ R
Sbjct: 61  AVIDAITKLRKKLSR 75


>gi|307721952|ref|YP_003893092.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Sulfurimonas
           autotrophica DSM 16294]
 gi|306980045|gb|ADN10080.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Sulfurimonas
           autotrophica DSM 16294]
          Length = 168

 Score = 84.7 bits (208), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 37/113 (32%), Positives = 65/113 (57%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C  E    S P YDLER G    ASPR +DVM+++G +T  M   +   Y+Q+P+P++VI
Sbjct: 56  CEAECNALSNPYYDLERLGIYFVASPRHADVMLLSGLMTFNMTPHVLEAYEQIPKPKWVI 115

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
           ++G C      +  ++++    ++ + +  ++ GCPP+   ++ G+L   KKI
Sbjct: 116 TLGDCPVMAAPFEKTFAIKAPANKHLKITHHITGCPPSPREIMQGLLEFLKKI 168


>gi|162149080|ref|YP_001603541.1| NADH-quinone oxidoreductase subunit B [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|161787657|emb|CAP57253.1| putative NADH-quinone oxidoreductase chain B [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 166

 Score = 84.7 bits (208), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 46/125 (36%), Positives = 73/125 (58%), Gaps = 1/125 (0%)

Query: 47  VTWARTGSLMWM-TFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNK 105
           VT AR  ++  + T G   CA+E+       Y L   G A  A+PR ++V++V G LT  
Sbjct: 19  VTGARPLAVFHVETGGCEGCAMEVAALDGAAYGLPATGIAFVATPRLAEVLLVTGPLTRA 78

Query: 106 MASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEA 165
           MA  L   +  MPEPR ++++G+CA  GG +  +Y+V+ G +    +D+ VPGCPP+  A
Sbjct: 79  MAPVLEAAWHAMPEPRALVAVGACAIDGGPFPENYAVLGGLEGRATLDVTVPGCPPSPAA 138

Query: 166 LIYGI 170
           ++ G+
Sbjct: 139 ILAGL 143


>gi|164513246|emb|CAP11716.1| NADH dehydrogenase subunit K [Betula insignis]
 gi|164513248|emb|CAP11717.1| NADH dehydrogenase subunit K [Betula pendula]
          Length = 67

 Score = 84.3 bits (207), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 35/67 (52%), Positives = 51/67 (76%)

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           G +CC +E       R+D +R+G  PR+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP
Sbjct: 1   GTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEP 60

Query: 121 RYVISMG 127
           +YVI+MG
Sbjct: 61  KYVIAMG 67


>gi|308271021|emb|CBX27631.1| hypothetical protein N47_H24530 [uncultured Desulfobacterium sp.]
          Length = 263

 Score = 84.3 bits (207), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 43/118 (36%), Positives = 65/118 (55%)

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           G   C  +    S   +D+ RFG    ASPR +D +++ G +T  M  AL + Y  +PEP
Sbjct: 138 GCNACEADSNVLSTLAWDMGRFGIQFVASPRHADGLLITGPVTENMRIALEKTYAAVPEP 197

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           + VI++GSCA  GG +        G   IVPVD+++PGCPP    ++ G+L    +I+
Sbjct: 198 KIVIAVGSCAISGGPFIDHPEQHNGAMDIVPVDLFIPGCPPHPLTILDGLLRFIGRIK 255


>gi|220918887|ref|YP_002494191.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Anaeromyxobacter
           dehalogenans 2CP-1]
 gi|219956741|gb|ACL67125.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Anaeromyxobacter
           dehalogenans 2CP-1]
          Length = 259

 Score = 84.3 bits (207), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 44/121 (36%), Positives = 69/121 (57%), Gaps = 3/121 (2%)

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           G + C  E+  +   ++D+ RFG    ASPR +D +++ G +T  M  ALR+ ++ +P P
Sbjct: 139 GCSGCEAELNASGNIQFDVGRFGVQFVASPRHADGLVITGPVTENMRLALRQTWEAVPAP 198

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRI---VPVDIYVPGCPPTAEALIYGILLLQKKI 177
           R VI++G+CA  GG +  S     G       +PVD+YVPGCPP     + GIL L  ++
Sbjct: 199 RIVIAVGACAISGGPFAGSPVTCGGAAAALDGIPVDLYVPGCPPHPITFLDGILRLLGRL 258

Query: 178 R 178
           +
Sbjct: 259 K 259


>gi|330834667|ref|YP_004409395.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Metallosphaera
           cuprina Ar-4]
 gi|329566806|gb|AEB94911.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Metallosphaera
           cuprina Ar-4]
          Length = 203

 Score = 84.3 bits (207), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 42/114 (36%), Positives = 64/114 (56%), Gaps = 8/114 (7%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E    S P+YD+ RFG     +P+ +D +IV G L+ KM+  LR+ YD MPEP+ VI
Sbjct: 98  CNLEFRLISAPQYDMTRFGIFFVNTPKHADALIVMGNLSEKMSKVLRKAYDVMPEPKLVI 157

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
            +G+CA  GG        V G    +  ++ VPGCPPT  +++  ++  +   R
Sbjct: 158 LIGTCAISGG--------VTGIPPDIKGNVIVPGCPPTPSSILDALIAAKGDKR 203


>gi|303244684|ref|ZP_07331016.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanothermococcus
           okinawensis IH1]
 gi|302484992|gb|EFL47924.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanothermococcus
           okinawensis IH1]
          Length = 148

 Score = 84.3 bits (207), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 43/127 (33%), Positives = 73/127 (57%), Gaps = 8/127 (6%)

Query: 59  TFGLACCAVEMMQASM-PRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQM 117
           T G   C +E++   + P YD E++      +PR++D+++V+G +T  M   L+++Y+ +
Sbjct: 18  TGGCNGCDIEVVNCVLSPFYDAEQYNVLLTWNPREADILVVSGCVTKVMTEPLKKIYEAI 77

Query: 118 PEPRYVISMGSCA-------NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGI 170
           PEP+ V+++G CA       N GG    S  +    + I+PVD+ VPGCPP  E +I GI
Sbjct: 78  PEPKAVVAVGCCALMGGVYGNIGGDLGTSDWIDGPVENIIPVDVKVPGCPPRPEDVIQGI 137

Query: 171 LLLQKKI 177
           +    K+
Sbjct: 138 VQALPKV 144


>gi|298504862|gb|ADI83585.1| Ech-hydrogenase-related complex, small subunit [Geobacter
           sulfurreducens KN400]
          Length = 251

 Score = 84.3 bits (207), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 43/118 (36%), Positives = 64/118 (54%)

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           G   C  +    S   +DL RFG    ASPR +D + V G +T  M  AL   ++ +P P
Sbjct: 132 GCNACEADTNVLSTIGWDLGRFGIQFVASPRHADGLWVTGPVTENMREALLMTWEAIPAP 191

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           + V++ G+CA GGG +  S     G   I+PVD+++PGCPP    ++ G+L L  +I 
Sbjct: 192 KIVVACGACAIGGGPFAGSPEAHNGVADILPVDLFIPGCPPHPATILDGLLRLIGRIE 249


>gi|256830388|ref|YP_003159116.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfomicrobium
           baculatum DSM 4028]
 gi|256579564|gb|ACU90700.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfomicrobium
           baculatum DSM 4028]
          Length = 263

 Score = 84.3 bits (207), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 41/119 (34%), Positives = 66/119 (55%)

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           G   C  ++       +DL RFG    ASPR +D +++ G +T  M  AL++ +  +PEP
Sbjct: 142 GCGACEADINVLGTIGWDLGRFGIQYVASPRHADGVLITGPVTKGMELALQKTWAAVPEP 201

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           R  I++G+CA  GG +        G D I+P+D+Y+PGCPP    ++ G L L  ++ +
Sbjct: 202 RIAIALGACAISGGPFIGHPQHNGGADPIIPIDLYIPGCPPHPLTILDGFLRLLGRLPK 260


>gi|197124107|ref|YP_002136058.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Anaeromyxobacter sp.
           K]
 gi|196173956|gb|ACG74929.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Anaeromyxobacter sp.
           K]
          Length = 256

 Score = 84.3 bits (207), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 44/121 (36%), Positives = 69/121 (57%), Gaps = 3/121 (2%)

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           G + C  E+  +   ++D+ RFG    ASPR +D +++ G +T  M  ALR+ ++ +P P
Sbjct: 136 GCSGCEAELNASGNIQFDVGRFGVQFVASPRHADGLVITGPVTENMRLALRQTWEAVPAP 195

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRI---VPVDIYVPGCPPTAEALIYGILLLQKKI 177
           R VI++G+CA  GG +  S     G       +PVD+YVPGCPP     + GIL L  ++
Sbjct: 196 RIVIAVGACAISGGPFAGSPVTCGGAAAALDGIPVDLYVPGCPPHPITFLDGILRLLGRL 255

Query: 178 R 178
           +
Sbjct: 256 K 256


>gi|209545176|ref|YP_002277405.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209532853|gb|ACI52790.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 166

 Score = 83.6 bits (205), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 46/125 (36%), Positives = 73/125 (58%), Gaps = 1/125 (0%)

Query: 47  VTWARTGSLMWM-TFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNK 105
           VT AR  ++  + T G   CA+E+       Y L   G A  A+PR ++V++V G LT  
Sbjct: 19  VTGARPLAVFHVETGGCEGCAMEVAALDGAAYGLPATGIAFVATPRLAEVLLVTGPLTRA 78

Query: 106 MASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEA 165
           MA  L   +  MPEPR ++++G+CA  GG +  +Y+V+ G +    +D+ VPGCPP+  A
Sbjct: 79  MAPVLEAAWHAMPEPRALVAVGACAIDGGPFPENYAVLGGLEGRATLDMTVPGCPPSPAA 138

Query: 166 LIYGI 170
           ++ G+
Sbjct: 139 ILAGL 143


>gi|218661622|ref|ZP_03517552.1| NADH dehydrogenase subunit B [Rhizobium etli IE4771]
          Length = 74

 Score = 83.6 bits (205), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 36/48 (75%), Positives = 41/48 (85%)

Query: 23 DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMM 70
          DA F  I++E+  KGFLVTS D+L+ WARTGSLMWMTFGLACCAVEMM
Sbjct: 27 DAFFGEINNELADKGFLVTSTDELINWARTGSLMWMTFGLACCAVEMM 74


>gi|220904047|ref|YP_002479359.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
 gi|219868346|gb|ACL48681.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
          Length = 254

 Score = 83.6 bits (205), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 38/99 (38%), Positives = 61/99 (61%)

Query: 77  YDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY 136
           +DL RFG    ASPR +D +++ G ++  M  A    Y+  PEPR V+++G+CA  GG +
Sbjct: 156 FDLPRFGIDFVASPRHADGIVLTGPVSENMRLAAIDTYNATPEPRLVVAVGACAISGGLF 215

Query: 137 HYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175
             +     G   I+PVD++VPGCPP    ++ G+L+L++
Sbjct: 216 RDAPQCNNGIADILPVDLFVPGCPPNPWTILDGLLMLRE 254


>gi|88603352|ref|YP_503530.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Methanospirillum
           hungatei JF-1]
 gi|88188814|gb|ABD41811.1| membrane-bound hydrogenase subunit ehaN [Methanospirillum hungatei
           JF-1]
          Length = 150

 Score = 83.6 bits (205), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 37/108 (34%), Positives = 64/108 (59%), Gaps = 1/108 (0%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E++    PRYDLE++G     +PR++DV+++ G +T +    LR V+D++PEP+  +
Sbjct: 29  CDIEVLACLSPRYDLEQYGIYVHNNPREADVLLIIGGVTPQWEDKLRMVWDKIPEPKVAV 88

Query: 125 SMGSCANGGGYYHYSYSVVRGCDR-IVPVDIYVPGCPPTAEALIYGIL 171
           S+G+C   G  +    ++ R   +  +P+   VPGCPP    +I  IL
Sbjct: 89  SIGNCPISGCVFSRPQTLTRAPAKSYIPIAAEVPGCPPRPTEIIQAIL 136


>gi|261856376|ref|YP_003263659.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Halothiobacillus
           neapolitanus c2]
 gi|261836845|gb|ACX96612.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Halothiobacillus
           neapolitanus c2]
          Length = 274

 Score = 83.2 bits (204), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 48/117 (41%), Positives = 73/117 (62%), Gaps = 1/117 (0%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C  E+     P Y+L R G     SPR +D+++V G +T  M   L R ++ MPEPR+V+
Sbjct: 151 CESEISALLNPFYNLHRLGVFFTPSPRFADLLLVTGPVTEVMREPLLRTFEAMPEPRWVM 210

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL-LLQKKIRRV 180
           ++G+CA GGG     Y+  +G D I+PVDI++PGCPP   A+I  +L LL ++ ++V
Sbjct: 211 ALGTCATGGGTNGGGYACHQGLDGILPVDIWLPGCPPNPAAIIEALLVLLDRRPQQV 267


>gi|153006624|ref|YP_001380949.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Anaeromyxobacter sp.
           Fw109-5]
 gi|152030197|gb|ABS27965.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Anaeromyxobacter sp.
           Fw109-5]
          Length = 256

 Score = 82.8 bits (203), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 51/154 (33%), Positives = 77/154 (50%), Gaps = 15/154 (9%)

Query: 39  LVTSVDQLVTWARTGSLMWMTFGLAC------------CAVEMMQASMPRYDLERFGFAP 86
           LV   D+ V  A   + M   FG +             C  E+  A   ++DL RFG   
Sbjct: 102 LVVRGDEPVLAAALDAEMRRVFGRSLKLRQVSAAGCNGCEAELNAAGNIQFDLGRFGIQF 161

Query: 87  RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGC 146
            ASPR +D ++V G ++  M  AL++ Y+ +P PR VI++G+CA  GG +  S     G 
Sbjct: 162 VASPRHADGIVVTGPVSENMRLALQKTYEAVPAPRLVIAVGACAISGGVFRESPVSCGGA 221

Query: 147 DRIVP---VDIYVPGCPPTAEALIYGILLLQKKI 177
              +P   VD+YVPGCPP     + G+L +  ++
Sbjct: 222 AAALPGVRVDLYVPGCPPHPITFLDGMLRMLGRL 255


>gi|302879581|ref|YP_003848145.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Gallionella
           capsiferriformans ES-2]
 gi|302582370|gb|ADL56381.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Gallionella
           capsiferriformans ES-2]
          Length = 171

 Score = 82.0 bits (201), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 39/108 (36%), Positives = 64/108 (59%), Gaps = 1/108 (0%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E+   +   Y+LE  G    ASPR +D+++V G ++  M  AL+R Y+  P+P+ V+
Sbjct: 57  CELEIHAVNNAYYNLEGLGIKFVASPRHADMLLVTGPVSRHMEVALKRTYEATPDPKLVV 116

Query: 125 SMGSCA-NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171
           ++G CA NGG +   +Y+       ++ VD+ V GCPPT  A++  IL
Sbjct: 117 AIGECACNGGIFGTDNYASCGNIANVISVDVAVSGCPPTPVAILQAIL 164


>gi|283853523|ref|ZP_06370764.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfovibrio sp.
           FW1012B]
 gi|283571104|gb|EFC19123.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfovibrio sp.
           FW1012B]
          Length = 253

 Score = 82.0 bits (201), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 41/113 (36%), Positives = 63/113 (55%)

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           G   C  ++   +   +DL RFG    ASPR +D + V G +T  M +A R  +D +P+P
Sbjct: 135 GCNACEADLNVLTTVVFDLGRFGIDFVASPRHADGVAVTGPVTVNMLAATRATFDAVPDP 194

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLL 173
           R  I++G+CA  GG +  S     G    +PVD+++PGCPP    ++ G+L L
Sbjct: 195 RVAIAVGACAISGGVFAGSPETTGGATPHLPVDLFIPGCPPHPLTILDGLLSL 247


>gi|51244894|ref|YP_064778.1| hydrogenase, component I-formate hydrogenlyase subunit 7
           [Desulfotalea psychrophila LSv54]
 gi|50875931|emb|CAG35771.1| related to hydrogenase, component I-formate hydrogenlyase subunit 7
           [Desulfotalea psychrophila LSv54]
          Length = 248

 Score = 82.0 bits (201), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 39/111 (35%), Positives = 62/111 (55%)

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           G   C  +    + P +DL RFG    ASPR +D + V G +++ M  AL   Y+ +  P
Sbjct: 134 GCNSCEADTNVLNTPFFDLSRFGIDFVASPRHADGLHVTGPISHNMRQALITTYEAVASP 193

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171
           + VI+ G C+  GG ++ S  VV   + ++PVD+Y+PGCPP     ++ +L
Sbjct: 194 KVVIASGCCSISGGPFYGSSEVVGDLNSLLPVDLYIPGCPPHPLTTLHALL 244


>gi|254167339|ref|ZP_04874191.1| NADH ubiquinone oxidoreductase, 20 Kd subunit family
           [Aciduliprofundum boonei T469]
 gi|197623602|gb|EDY36165.1| NADH ubiquinone oxidoreductase, 20 Kd subunit family
           [Aciduliprofundum boonei T469]
          Length = 179

 Score = 81.6 bits (200), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 40/109 (36%), Positives = 60/109 (55%), Gaps = 12/109 (11%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C  E+   + P+YDL R GF     PR +D+++V G  T KM   L+  Y+QMPEP+ V+
Sbjct: 77  CNREISLLNSPQYDLHRLGFFFTPVPRHADILLVIGEPTEKMIPVLKEAYEQMPEPKIVM 136

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLL 173
           + G+CAN               ++I+ VD  V GCPP   A++  +L+L
Sbjct: 137 TAGACAN------------EKIEKIIKVDARVSGCPPQPIAILKALLML 173


>gi|325959025|ref|YP_004290491.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanobacterium sp.
           AL-21]
 gi|325330457|gb|ADZ09519.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanobacterium sp.
           AL-21]
          Length = 149

 Score = 81.3 bits (199), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 38/114 (33%), Positives = 64/114 (56%), Gaps = 1/114 (0%)

Query: 59  TFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMP 118
           T G   C +E++    PRYDLE++G     +PR++DV+++ G L  +    L+++Y + P
Sbjct: 21  TGGCNGCDIEVVALLSPRYDLEQYGIYVHNNPREADVLLITGALAEQWKDKLQKIYAKTP 80

Query: 119 EPRYVISMGSCANGGGYYHYSYSVVRG-CDRIVPVDIYVPGCPPTAEALIYGIL 171
           EP+ V+++G+C   G  ++   S V       +PVD  V GCPP    ++  IL
Sbjct: 81  EPKVVVAIGNCPLTGDVFNQEGSSVNAPVSDYIPVDAEVSGCPPRPTEILAAIL 134


>gi|331664272|ref|ZP_08365178.1| formate hydrogenlyase subunit 7 (FHL subunit 7)
           (Hydrogenase-3component G) [Escherichia coli TA143]
 gi|331058203|gb|EGI30184.1| formate hydrogenlyase subunit 7 (FHL subunit 7)
           (Hydrogenase-3component G) [Escherichia coli TA143]
          Length = 171

 Score = 80.9 bits (198), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 39/86 (45%), Positives = 51/86 (59%), Gaps = 4/86 (4%)

Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGC 159
           G +T  M S   R +   P+P+  IS G+C N GG +H  Y V  G D+IVPVD+Y+PGC
Sbjct: 2   GAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGC 61

Query: 160 PPTAEALIYGIL----LLQKKIRRVG 181
           PPT  A +YG      LL++KI   G
Sbjct: 62  PPTPAATLYGFAMALGLLEQKIHARG 87


>gi|89902050|ref|YP_524521.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Rhodoferax
           ferrireducens T118]
 gi|89346787|gb|ABD70990.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Rhodoferax
           ferrireducens T118]
          Length = 254

 Score = 80.5 bits (197), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 44/114 (38%), Positives = 67/114 (58%), Gaps = 2/114 (1%)

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           G + C +E+   S   +DL R+G    ASPR +D ++++G +T  MA AL+  +D +PEP
Sbjct: 137 GCSGCEMEINALSNVNFDLGRYGIDIVASPRHADALVLSGPITRNMAQALQICWDAIPEP 196

Query: 121 RYVISMGSCANGGGYYHYSYSVVRG-CDRIVPVDIYVPGCPPTAEALIYGILLL 173
           + VI++G+CA  GG +  S ++ R   D   P  +YVPGCP      I GI+ L
Sbjct: 197 KLVIAVGACAISGGVFADSDALDRQFLDNFKPA-LYVPGCPAHPLTFISGIMDL 249


>gi|126179131|ref|YP_001047096.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Methanoculleus
           marisnigri JR1]
 gi|125861925|gb|ABN57114.1| membrane-bound hydrogenase subunit ehaN [Methanoculleus marisnigri
           JR1]
          Length = 151

 Score = 80.5 bits (197), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 65/108 (60%), Gaps = 1/108 (0%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E++    PRYD+E++G     +PR++DV++V G++T +    LR ++D++PEP+  +
Sbjct: 29  CDIEVLACLAPRYDIEQYGIYVHNNPREADVLLVIGSVTPQWVDKLRDIWDKIPEPKVAV 88

Query: 125 SMGSCANGGGYYHYSYSVVR-GCDRIVPVDIYVPGCPPTAEALIYGIL 171
           ++G+C   G  Y    ++     ++ +P+   VPGCPP    ++  IL
Sbjct: 89  AIGNCPISGCVYARRGTLTSPPVEKYIPIAAQVPGCPPRPTEILNAIL 136


>gi|15839463|ref|NP_334500.1| NADH-ubiquinone oxidoreductase, 20 Kd subunit [Mycobacterium
           tuberculosis CDC1551]
 gi|31791260|ref|NP_853753.1| oxidoreductase [Mycobacterium bovis AF2122/97]
 gi|121635995|ref|YP_976218.1| putative oxidoreductase [Mycobacterium bovis BCG str. Pasteur
           1173P2]
 gi|148659844|ref|YP_001281367.1| putative oxidoreductase [Mycobacterium tuberculosis H37Ra]
 gi|148821274|ref|YP_001286028.1| oxidoreductase [Mycobacterium tuberculosis F11]
 gi|167970613|ref|ZP_02552890.1| hypothetical oxidoreductase [Mycobacterium tuberculosis H37Ra]
 gi|215406072|ref|ZP_03418253.1| oxidoreductase [Mycobacterium tuberculosis 02_1987]
 gi|215425279|ref|ZP_03423198.1| oxidoreductase [Mycobacterium tuberculosis T92]
 gi|215432997|ref|ZP_03430916.1| oxidoreductase [Mycobacterium tuberculosis EAS054]
 gi|215448360|ref|ZP_03435112.1| oxidoreductase [Mycobacterium tuberculosis T85]
 gi|218755809|ref|ZP_03534605.1| oxidoreductase [Mycobacterium tuberculosis GM 1503]
 gi|219555867|ref|ZP_03534943.1| oxidoreductase [Mycobacterium tuberculosis T17]
 gi|224988468|ref|YP_002643155.1| putative oxidoreductase [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253797000|ref|YP_003030001.1| oxidoreductase [Mycobacterium tuberculosis KZN 1435]
 gi|254233481|ref|ZP_04926807.1| hypothetical protein TBCG_00083 [Mycobacterium tuberculosis C]
 gi|254366540|ref|ZP_04982584.1| hypothetical oxidoreductase [Mycobacterium tuberculosis str.
           Haarlem]
 gi|254549015|ref|ZP_05139462.1| oxidoreductase [Mycobacterium tuberculosis '98-R604 INH-RIF-EM']
 gi|260184939|ref|ZP_05762413.1| oxidoreductase [Mycobacterium tuberculosis CPHL_A]
 gi|260199078|ref|ZP_05766569.1| oxidoreductase [Mycobacterium tuberculosis T46]
 gi|260203226|ref|ZP_05770717.1| oxidoreductase [Mycobacterium tuberculosis K85]
 gi|289441451|ref|ZP_06431195.1| oxidoreductase [Mycobacterium tuberculosis T46]
 gi|289445612|ref|ZP_06435356.1| oxidoreductase [Mycobacterium tuberculosis CPHL_A]
 gi|289552333|ref|ZP_06441543.1| oxidoreductase [Mycobacterium tuberculosis KZN 605]
 gi|289567972|ref|ZP_06448199.1| oxidoreductase [Mycobacterium tuberculosis T17]
 gi|289572662|ref|ZP_06452889.1| oxidoreductase [Mycobacterium tuberculosis K85]
 gi|289747849|ref|ZP_06507227.1| oxidoreductase [Mycobacterium tuberculosis 02_1987]
 gi|289748549|ref|ZP_06507927.1| oxidoreductase [Mycobacterium tuberculosis T92]
 gi|289756143|ref|ZP_06515521.1| oxidoreductase [Mycobacterium tuberculosis EAS054]
 gi|289760181|ref|ZP_06519559.1| NADH-ubiquinone oxidoreductase [Mycobacterium tuberculosis T85]
 gi|289764198|ref|ZP_06523576.1| NADH-ubiquinone oxidoreductase [Mycobacterium tuberculosis GM 1503]
 gi|294995700|ref|ZP_06801391.1| oxidoreductase [Mycobacterium tuberculosis 210]
 gi|297632555|ref|ZP_06950335.1| oxidoreductase [Mycobacterium tuberculosis KZN 4207]
 gi|297729528|ref|ZP_06958646.1| oxidoreductase [Mycobacterium tuberculosis KZN R506]
 gi|306778376|ref|ZP_07416713.1| oxidoreductase [Mycobacterium tuberculosis SUMu001]
 gi|306778908|ref|ZP_07417245.1| oxidoreductase [Mycobacterium tuberculosis SUMu002]
 gi|306782697|ref|ZP_07421019.1| oxidoreductase [Mycobacterium tuberculosis SUMu003]
 gi|306787063|ref|ZP_07425385.1| oxidoreductase [Mycobacterium tuberculosis SUMu004]
 gi|306791621|ref|ZP_07429923.1| oxidoreductase [Mycobacterium tuberculosis SUMu005]
 gi|306795684|ref|ZP_07433986.1| oxidoreductase [Mycobacterium tuberculosis SUMu006]
 gi|306801659|ref|ZP_07438327.1| oxidoreductase [Mycobacterium tuberculosis SUMu008]
 gi|306970266|ref|ZP_07482927.1| oxidoreductase [Mycobacterium tuberculosis SUMu009]
 gi|306974499|ref|ZP_07487160.1| oxidoreductase [Mycobacterium tuberculosis SUMu010]
 gi|307082207|ref|ZP_07491377.1| oxidoreductase [Mycobacterium tuberculosis SUMu011]
 gi|307082548|ref|ZP_07491661.1| oxidoreductase [Mycobacterium tuberculosis SUMu012]
 gi|313656856|ref|ZP_07813736.1| oxidoreductase [Mycobacterium tuberculosis KZN V2475]
 gi|13879137|gb|AAK44314.1| NADH-ubiquinone oxidoreductase, 20 Kd subunit [Mycobacterium
           tuberculosis CDC1551]
 gi|31616845|emb|CAD92947.1| PROBABLE OXIDOREDUCTASE [Mycobacterium bovis AF2122/97]
 gi|121491642|emb|CAL70100.1| Probable oxidoreductase [Mycobacterium bovis BCG str. Pasteur
           1173P2]
 gi|124603274|gb|EAY61549.1| hypothetical protein TBCG_00083 [Mycobacterium tuberculosis C]
 gi|134152052|gb|EBA44097.1| hypothetical oxidoreductase [Mycobacterium tuberculosis str.
           Haarlem]
 gi|148503996|gb|ABQ71805.1| putative oxidoreductase [Mycobacterium tuberculosis H37Ra]
 gi|148719801|gb|ABR04426.1| hypothetical oxidoreductase [Mycobacterium tuberculosis F11]
 gi|224771581|dbj|BAH24387.1| putative oxidoreductase [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253318503|gb|ACT23106.1| oxidoreductase [Mycobacterium tuberculosis KZN 1435]
 gi|289414370|gb|EFD11610.1| oxidoreductase [Mycobacterium tuberculosis T46]
 gi|289418570|gb|EFD15771.1| oxidoreductase [Mycobacterium tuberculosis CPHL_A]
 gi|289436965|gb|EFD19458.1| oxidoreductase [Mycobacterium tuberculosis KZN 605]
 gi|289537093|gb|EFD41671.1| oxidoreductase [Mycobacterium tuberculosis K85]
 gi|289541725|gb|EFD45374.1| oxidoreductase [Mycobacterium tuberculosis T17]
 gi|289688377|gb|EFD55865.1| oxidoreductase [Mycobacterium tuberculosis 02_1987]
 gi|289689136|gb|EFD56565.1| oxidoreductase [Mycobacterium tuberculosis T92]
 gi|289696730|gb|EFD64159.1| oxidoreductase [Mycobacterium tuberculosis EAS054]
 gi|289711704|gb|EFD75720.1| NADH-ubiquinone oxidoreductase [Mycobacterium tuberculosis GM 1503]
 gi|289715745|gb|EFD79757.1| NADH-ubiquinone oxidoreductase [Mycobacterium tuberculosis T85]
 gi|308213367|gb|EFO72766.1| oxidoreductase [Mycobacterium tuberculosis SUMu001]
 gi|308328111|gb|EFP16962.1| oxidoreductase [Mycobacterium tuberculosis SUMu002]
 gi|308332461|gb|EFP21312.1| oxidoreductase [Mycobacterium tuberculosis SUMu003]
 gi|308336250|gb|EFP25101.1| oxidoreductase [Mycobacterium tuberculosis SUMu004]
 gi|308339839|gb|EFP28690.1| oxidoreductase [Mycobacterium tuberculosis SUMu005]
 gi|308343833|gb|EFP32684.1| oxidoreductase [Mycobacterium tuberculosis SUMu006]
 gi|308351559|gb|EFP40410.1| oxidoreductase [Mycobacterium tuberculosis SUMu008]
 gi|308352244|gb|EFP41095.1| oxidoreductase [Mycobacterium tuberculosis SUMu009]
 gi|308356201|gb|EFP45052.1| oxidoreductase [Mycobacterium tuberculosis SUMu010]
 gi|308360154|gb|EFP49005.1| oxidoreductase [Mycobacterium tuberculosis SUMu011]
 gi|308367717|gb|EFP56568.1| oxidoreductase [Mycobacterium tuberculosis SUMu012]
 gi|323717424|gb|EGB26629.1| oxidoreductase [Mycobacterium tuberculosis CDC1551A]
 gi|326905842|gb|EGE52775.1| oxidoreductase [Mycobacterium tuberculosis W-148]
 gi|328456789|gb|AEB02212.1| oxidoreductase [Mycobacterium tuberculosis KZN 4207]
          Length = 159

 Score = 80.5 bits (197), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 46/112 (41%), Positives = 64/112 (57%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C VE+  A  P YD ERFG    ASPR +D ++V G +T+ MA  LR+  +  P PR VI
Sbjct: 48  CEVEISGAFGPVYDAERFGARLVASPRHADALLVTGVVTHNMAGPLRKTLEATPRPRVVI 107

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKK 176
           + G CA   G +  +Y VV     +VPVD+ + GCPPT  A++  +  +  K
Sbjct: 108 ACGDCALNRGVFADAYGVVGAVGEVVPVDVEIAGCPPTPAAIMAALRSVTGK 159


>gi|182414283|ref|YP_001819349.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Opitutus terrae
           PB90-1]
 gi|177841497|gb|ACB75749.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Opitutus terrae
           PB90-1]
          Length = 285

 Score = 80.1 bits (196), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 38/85 (44%), Positives = 54/85 (63%)

Query: 77  YDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY 136
           +DL RFG    ASPR +D ++V G ++  M  ALR+ ++ MP P+ VI++G+ A  GG +
Sbjct: 179 WDLGRFGIQFVASPRHADGLVVTGPVSKGMELALRKTWEAMPAPKIVIAVGAEAISGGVF 238

Query: 137 HYSYSVVRGCDRIVPVDIYVPGCPP 161
                V  G D IVPVD+Y+PG PP
Sbjct: 239 AGHPQVRNGVDAIVPVDLYIPGWPP 263


>gi|325958030|ref|YP_004289496.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanobacterium sp.
           AL-21]
 gi|325329462|gb|ADZ08524.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanobacterium sp.
           AL-21]
          Length = 148

 Score = 80.1 bits (196), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 46/134 (34%), Positives = 72/134 (53%), Gaps = 12/134 (8%)

Query: 55  LMWMTFGLACCAVEMMQASM-PRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRV 113
           ++  T G   C +E++   + P+YD E++      +PR++DV++V G +T      LR +
Sbjct: 15  MLVYTGGCNGCDIEIVNCVLSPKYDAEQYKVFLTWNPREADVLVVTGPVTRHNEKPLREI 74

Query: 114 YDQMPEPRYVISMGSCANGGGYYHY------SYSVVRGCDRIVPVDIYVPGCPPTAEALI 167
           YD +PEP+ VI+ G+CA  GG Y        S  ++   D I+PVD  VPGC    E ++
Sbjct: 75  YDAIPEPKAVIAAGACALMGGVYKNIHGDIPSEEIMGPVDNIIPVDAKVPGCAVRPEDVL 134

Query: 168 YGI-----LLLQKK 176
            G+     LLL  K
Sbjct: 135 SGVVSALPLLLDAK 148


>gi|304315372|ref|YP_003850519.1| energy-converting hydrogenase B, subunit M [Methanothermobacter
           marburgensis str. Marburg]
 gi|5734564|emb|CAB52790.1| hydrogenase small subunit [Methanothermobacter thermautotrophicus]
 gi|302588831|gb|ADL59206.1| energy-converting hydrogenase B, subunit M [Methanothermobacter
           marburgensis str. Marburg]
          Length = 148

 Score = 80.1 bits (196), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 42/131 (32%), Positives = 73/131 (55%), Gaps = 7/131 (5%)

Query: 54  SLMWMTFGLACCAVEMMQASM-PRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRR 112
           +++  T G   C +E++ A + P+YD E++      +PR++DV+IV G +T +    L+ 
Sbjct: 14  AMLVYTGGCNGCDIEIVNAVLSPKYDAEQYKIFLTWNPREADVLIVTGPVTKQNEGPLKE 73

Query: 113 VYDQMPEPRYVISMGSCANGGGYYHY------SYSVVRGCDRIVPVDIYVPGCPPTAEAL 166
           +Y+ +PEP+ VI+ G+CA  GG Y        S  +    D+++PVD  VPGC    E +
Sbjct: 74  IYNAIPEPKAVIAAGACALMGGVYKNIHGDIPSEEICGPVDKVIPVDAKVPGCAVRPEDV 133

Query: 167 IYGILLLQKKI 177
           + G +    K+
Sbjct: 134 LAGAVAALPKL 144


>gi|108708858|gb|ABF96653.1| NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial
           precursor, putative [Oryza sativa Japonica Group]
          Length = 86

 Score = 79.3 bits (194), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 39/72 (54%), Positives = 47/72 (65%), Gaps = 4/72 (5%)

Query: 58  MTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQM 117
           MTFGLAC AVEMM A   RYD +RFG     SPRQSD MI+ GTLTNKM  ALR+     
Sbjct: 1   MTFGLACFAVEMMHAGASRYDFDRFGVIFHPSPRQSDCMIITGTLTNKMVPALRKAL--- 57

Query: 118 PEPRYVISMGSC 129
             P + +++ +C
Sbjct: 58  -IPTFNVNLETC 68


>gi|150401781|ref|YP_001325547.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanococcus
           aeolicus Nankai-3]
 gi|150014484|gb|ABR56935.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanococcus
           aeolicus Nankai-3]
          Length = 146

 Score = 79.3 bits (194), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 43/127 (33%), Positives = 71/127 (55%), Gaps = 8/127 (6%)

Query: 59  TFGLACCAVEMMQASM-PRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQM 117
           T G   C ++++   + P YD E++      +PR++D+++V+G +T  M   L+ +Y+ +
Sbjct: 18  TGGCNGCDIDIVNCVLSPFYDAEQYNVFLTWNPREADILLVSGCVTKVMTEPLKEIYEAI 77

Query: 118 PEPRYVISMGSCANGGGYYHY------SYSVVRG-CDRIVPVDIYVPGCPPTAEALIYGI 170
           PEP+ V+++G CA  GG Y        +   + G    I+PVDI VPGC P  E +I GI
Sbjct: 78  PEPKAVVAVGCCALMGGVYANIGGDLGTSDFIDGPVKNIIPVDINVPGCSPRPEDIIQGI 137

Query: 171 LLLQKKI 177
           +    KI
Sbjct: 138 VQALPKI 144


>gi|254166691|ref|ZP_04873545.1| NADH ubiquinone oxidoreductase, 20 Kd subunit family
           [Aciduliprofundum boonei T469]
 gi|289596449|ref|YP_003483145.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Aciduliprofundum
           boonei T469]
 gi|197624301|gb|EDY36862.1| NADH ubiquinone oxidoreductase, 20 Kd subunit family
           [Aciduliprofundum boonei T469]
 gi|289534236|gb|ADD08583.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Aciduliprofundum
           boonei T469]
          Length = 179

 Score = 79.3 bits (194), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 38/109 (34%), Positives = 59/109 (54%), Gaps = 12/109 (11%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C  E+     P+YD+ R GF     PR +D+++V G  T KM   L+  Y+QMP+P+ V+
Sbjct: 77  CNREISLLGAPQYDMNRLGFFFTPVPRHADILLVIGEPTEKMIPVLKEAYEQMPKPKIVV 136

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLL 173
           + G+CAN               ++I+ VD  V GCPP   A++  +L+L
Sbjct: 137 TAGACAN------------EKIEKIIKVDARVSGCPPQPIAILKALLML 173


>gi|146304195|ref|YP_001191511.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Metallosphaera
           sedula DSM 5348]
 gi|145702445|gb|ABP95587.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Metallosphaera
           sedula DSM 5348]
          Length = 203

 Score = 79.0 bits (193), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 38/115 (33%), Positives = 63/115 (54%), Gaps = 8/115 (6%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E+   S P+YD+ RFG     +P+ +D +++ G L  +M   +RR YD +P P+ VI
Sbjct: 97  CNLELRLISSPQYDMTRFGIFFTNTPKHADALLIMGNLGKRMEEVIRRAYDVIPSPKLVI 156

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
            +G+CA  GG        V G    +  D+ VPGCPPT  +++  ++  +   R+
Sbjct: 157 LLGTCAISGG--------VTGIPPDIRGDVIVPGCPPTPASILDALIKAKGGDRK 203


>gi|15679250|ref|NP_276367.1| formate hydrogenlyase, subunit 7 [Methanothermobacter
           thermautotrophicus str. Delta H]
 gi|2622351|gb|AAB85728.1| formate hydrogenlyase, subunit 7 [Methanothermobacter
           thermautotrophicus str. Delta H]
          Length = 148

 Score = 78.6 bits (192), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 42/131 (32%), Positives = 72/131 (54%), Gaps = 7/131 (5%)

Query: 54  SLMWMTFGLACCAVEMMQASM-PRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRR 112
           +++  T G   C +E++ A   P+YD E++      +PR++DV+IV G +T +    L+ 
Sbjct: 14  AMLVYTGGCNGCDIEIVNAVFSPKYDAEQYKIFLTWNPREADVLIVTGPVTKQNEEPLKA 73

Query: 113 VYDQMPEPRYVISMGSCANGGGYYHY------SYSVVRGCDRIVPVDIYVPGCPPTAEAL 166
           +Y+ +PEP+ VI+ G+CA  GG Y        S  +    D+++PVD  VPGC    E +
Sbjct: 74  IYNAIPEPKAVIAAGACALMGGVYKNIHGDIPSEEICGPVDKVIPVDAKVPGCAVRPEDV 133

Query: 167 IYGILLLQKKI 177
           + G +    K+
Sbjct: 134 LAGAVAALPKL 144


>gi|15607224|ref|NP_214596.1| oxidoreductase [Mycobacterium tuberculosis H37Rv]
 gi|2808739|emb|CAA16263.1| PROBABLE OXIDOREDUCTASE [Mycobacterium tuberculosis H37Rv]
          Length = 159

 Score = 78.6 bits (192), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 45/112 (40%), Positives = 64/112 (57%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C VE+  A  P YD ERFG    ASP+ +D ++V G +T+ MA  LR+  +  P PR VI
Sbjct: 48  CEVEISGAFGPVYDAERFGARLVASPQHADALLVTGVVTHNMAGPLRKTLEATPRPRVVI 107

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKK 176
           + G CA   G +  +Y VV     +VPVD+ + GCPPT  A++  +  +  K
Sbjct: 108 ACGDCALNRGVFADAYGVVGAVGEVVPVDVEIAGCPPTPAAIMAALRSVTGK 159


>gi|331694628|ref|YP_004330867.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Pseudonocardia
           dioxanivorans CB1190]
 gi|326949317|gb|AEA23014.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Pseudonocardia
           dioxanivorans CB1190]
          Length = 161

 Score = 78.6 bits (192), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 43/108 (39%), Positives = 63/108 (58%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E+  A  P YD ER+G    ASPR +D ++V G +T  M   LRR Y+ + EP+ V+
Sbjct: 50  CELEIGAAFGPVYDAERYGARLVASPRHADALVVTGAVTRNMVEPLRRTYEAVGEPKVVV 109

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILL 172
           ++G CA   G +  +Y VV     +VPVD+ V GCPP  E ++  + L
Sbjct: 110 AVGDCARNCGVFAEAYGVVGAVADVVPVDLEVVGCPPRPETIVAALRL 157


>gi|197116467|ref|YP_002136894.1| iron-sulfur cluster-binding domain-containing hydrogenase subunit
           [Geobacter bemidjiensis Bem]
 gi|197085827|gb|ACH37098.1| hydrogenase subunit, iron-sulfur cluster-binding domain-containing
           protein [Geobacter bemidjiensis Bem]
          Length = 332

 Score = 77.8 bits (190), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 37/107 (34%), Positives = 64/107 (59%), Gaps = 1/107 (0%)

Query: 65  CAVEM-MQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYV 123
           C VE+ + A++  +D+E+ G      P ++D++++ G LT +  +   R+Y + PE +  
Sbjct: 26  CDVELAVTAAVDEFDVEQLGCRYTEEPHEADILLITGPLTVRARNEALRLYAEAPETKVT 85

Query: 124 ISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGI 170
           +++G C   GG +  SY+V     R +PVD+ VPGCPP  +AL+ GI
Sbjct: 86  VAVGVCPVSGGVFRDSYAVDGPVQRYLPVDLNVPGCPPRPQALLAGI 132


>gi|215413939|ref|ZP_03422601.1| oxidoreductase [Mycobacterium tuberculosis 94_M4241A]
 gi|298527474|ref|ZP_07014883.1| conserved hypothetical protein [Mycobacterium tuberculosis
           94_M4241A]
 gi|298497268|gb|EFI32562.1| conserved hypothetical protein [Mycobacterium tuberculosis
           94_M4241A]
          Length = 159

 Score = 77.4 bits (189), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 45/112 (40%), Positives = 63/112 (56%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C VE+  A  P YD  RFG    ASPR +D ++V G +T+ MA  LR+  +  P PR VI
Sbjct: 48  CEVEISGAFGPVYDAGRFGARLVASPRHADALLVTGVVTHNMAGPLRKTLEATPRPRVVI 107

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKK 176
           + G CA   G +  +Y VV     +VPVD+ + GCPPT  A++  +  +  K
Sbjct: 108 ACGDCALNRGVFADAYGVVGAVGEVVPVDVEIAGCPPTPAAIMAALRSVTGK 159


>gi|164513250|emb|CAP11718.1| NADH dehydrogenase subunit K [Coffea mauritiana]
 gi|164513252|emb|CAP11719.1| NADH dehydrogenase subunit K [Coffea myrtifolia]
          Length = 61

 Score = 77.4 bits (189), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 31/52 (59%), Positives = 45/52 (86%)

Query: 76  RYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMG 127
           R+D +R+G  PR+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG
Sbjct: 10  RFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMG 61


>gi|222625140|gb|EEE59272.1| hypothetical protein OsJ_11297 [Oryza sativa Japonica Group]
          Length = 89

 Score = 77.4 bits (189), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 37/55 (67%), Positives = 40/55 (72%)

Query: 58  MTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRR 112
           MTFGLAC AVEMM A   RYD +RFG     SPRQSD MI+ GTLTNKM  ALR+
Sbjct: 1   MTFGLACFAVEMMHAGASRYDFDRFGVIFHPSPRQSDCMIITGTLTNKMVPALRK 55


>gi|164513242|emb|CAP11714.1| NADH dehydrogenase subunit K [Begonia conchifolia]
 gi|164513244|emb|CAP11715.1| NADH dehydrogenase subunit K [Begonia plagioneura]
          Length = 56

 Score = 77.4 bits (189), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 31/52 (59%), Positives = 45/52 (86%)

Query: 76  RYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMG 127
           R+D +R+G  PR+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG
Sbjct: 5   RFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMG 56


>gi|197119557|ref|YP_002139984.1| Ech-hydrogenase-like complex small subunit [Geobacter bemidjiensis
           Bem]
 gi|197088917|gb|ACH40188.1| Ech-hydrogenase-related complex, small subunit [Geobacter
           bemidjiensis Bem]
          Length = 252

 Score = 77.0 bits (188), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 36/85 (42%), Positives = 52/85 (61%)

Query: 77  YDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY 136
           +DL RFG    ASPR +D + V G +T  M  AL   Y+ +P P+ V++ G+CA  GG +
Sbjct: 151 WDLGRFGIQFVASPRHADGLWVTGPVTEHMREALLLTYEAIPAPKLVVACGACAISGGPF 210

Query: 137 HYSYSVVRGCDRIVPVDIYVPGCPP 161
             S     G + ++PVD+Y+PGCPP
Sbjct: 211 RGSPEAHDGVEGMLPVDLYIPGCPP 235


>gi|296116642|ref|ZP_06835252.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Gluconacetobacter
           hansenii ATCC 23769]
 gi|295976854|gb|EFG83622.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Gluconacetobacter
           hansenii ATCC 23769]
          Length = 148

 Score = 77.0 bits (188), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 41/121 (33%), Positives = 66/121 (54%), Gaps = 7/121 (5%)

Query: 59  TFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMP 118
           T G A CA+E+    +P  D    G     SPR +D+++VAG +T  M   L + +  MP
Sbjct: 19  TGGCAGCAMELAALDVPADDAGCKGICFVRSPRHADILLVAGPVTRAMVPVLEQAWQAMP 78

Query: 119 EPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
            PR ++++G CA  GG +  +Y+V+ G    V +D+ +PGCPP+ +       ++Q  I 
Sbjct: 79  GPRALMAIGDCAIDGGMFGENYAVLGGLRGRVHLDLSLPGCPPSPD-------MIQSAIT 131

Query: 179 R 179
           R
Sbjct: 132 R 132


>gi|332295482|ref|YP_004437405.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Thermodesulfobium
           narugense DSM 14796]
 gi|332178585|gb|AEE14274.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Thermodesulfobium
           narugense DSM 14796]
          Length = 140

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 59/106 (55%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E++     RYD+ER G     SP+ +D+ +V G +T +    L ++YD +P P+ ++
Sbjct: 24  CDIEIVALFASRYDVERLGCKLVGSPKHADICLVTGPVTARSKEPLLKIYDMLPNPKVIV 83

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGI 170
            +G+C+   G +   YS+V    +++PV  YV GC    + +  G+
Sbjct: 84  CVGACSISSGVFTDGYSIVGPAHKLIPVTAYVGGCSAHPKNIFLGL 129


>gi|239905427|ref|YP_002952166.1| putative hydrogenase-4 component I [Desulfovibrio magneticus RS-1]
 gi|239795291|dbj|BAH74280.1| putative hydrogenase-4 component I [Desulfovibrio magneticus RS-1]
          Length = 258

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 38/97 (39%), Positives = 55/97 (56%)

Query: 77  YDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY 136
           +DL RFG    ASPR +D + V G +T  M  A    +  +P+PR  I++G+CA  GG +
Sbjct: 152 FDLGRFGIDFVASPRHADGVAVTGPVTRNMLEATLGTFAAVPDPRVGIAIGTCAISGGLF 211

Query: 137 HYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLL 173
             S     G    +PVD+Y+PGCPP    ++ G+L L
Sbjct: 212 AGSPETTGGATPHLPVDLYIPGCPPHPLTILDGLLRL 248


>gi|255021729|ref|ZP_05293769.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Acidithiobacillus
           caldus ATCC 51756]
 gi|254968869|gb|EET26391.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Acidithiobacillus
           caldus ATCC 51756]
          Length = 264

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 36/98 (36%), Positives = 55/98 (56%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C  E+     P Y+L R G     SPR +D+++V G +T  M   L   ++ MPEPR V+
Sbjct: 140 CESEIGALDNPFYNLHRLGIFFTPSPRFADLLMVTGPVTAPMHGPLLATWEAMPEPRMVL 199

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162
           + G+CA  G      Y+   G + ++PVD+++PGCPP 
Sbjct: 200 ATGTCAVSGAPMDGGYAGGSGLNALLPVDVWLPGCPPN 237


>gi|253699704|ref|YP_003020893.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Geobacter sp. M21]
 gi|251774554|gb|ACT17135.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Geobacter sp. M21]
          Length = 252

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 35/85 (41%), Positives = 52/85 (61%)

Query: 77  YDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY 136
           +D+ RFG    ASPR +D + V G +T  M  AL   Y+ +P P+ V++ G+CA  GG +
Sbjct: 151 WDIGRFGIQFVASPRHADGLWVTGPVTEHMREALLMTYEAIPAPKLVVACGACAISGGPF 210

Query: 137 HYSYSVVRGCDRIVPVDIYVPGCPP 161
             S     G + ++PVD+Y+PGCPP
Sbjct: 211 RGSPEAHDGVEGMLPVDLYIPGCPP 235


>gi|307353348|ref|YP_003894399.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanoplanus
           petrolearius DSM 11571]
 gi|307156581|gb|ADN35961.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanoplanus
           petrolearius DSM 11571]
          Length = 160

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 33/116 (28%), Positives = 66/116 (56%), Gaps = 1/116 (0%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E++    PRYDLE++G     +PR++DV+++ G L  +    L  +++++PEP+  I
Sbjct: 29  CDIEILACLSPRYDLEQYGIYVHNNPREADVLLITGALCEQWDDKLVSLWEKIPEPKAAI 88

Query: 125 SMGSCANGGGYYHYSYSVVR-GCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           ++G+C   G  ++   S V     + +P+   +PGCPP    ++  IL +  ++ +
Sbjct: 89  TIGNCPVSGCVFNRRGSYVNPPVSKHIPIAASIPGCPPRPSEIVSTILSIAPEVFK 144


>gi|257077039|ref|ZP_05571400.1| Ni,Fe-hydrogenase III small subunit [Ferroplasma acidarmanus fer1]
          Length = 199

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 40/112 (35%), Positives = 57/112 (50%), Gaps = 8/112 (7%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C VE      P+YD  RF      +PR +D ++V G  T+ M + L+  YD MP P+ VI
Sbjct: 95  CNVEFTTLFSPQYDTNRFKIFMSNTPRHADALVVMGVYTDGMEAVLKEAYDAMPSPKIVI 154

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKK 176
            +G+CA  GG        + G   +   DI V GCPPT  ++I  I+  + K
Sbjct: 155 GIGACALSGG--------IIGSRAMDKYDIEVAGCPPTPASIINAIIKARGK 198


>gi|212704381|ref|ZP_03312509.1| hypothetical protein DESPIG_02436 [Desulfovibrio piger ATCC 29098]
 gi|212672102|gb|EEB32585.1| hypothetical protein DESPIG_02436 [Desulfovibrio piger ATCC 29098]
          Length = 265

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 37/100 (37%), Positives = 59/100 (59%)

Query: 77  YDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY 136
           YDL +FG    ASPR +D ++V G ++  M  A+   +  +PEPR  I++GSCA  GG +
Sbjct: 162 YDLGKFGINFVASPRHADGILVTGPVSRNMREAVLATWAAVPEPRIAIAVGSCAISGGLF 221

Query: 137 HYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKK 176
             S     G   +  V ++VPGCPP+  +++ G+L L+ +
Sbjct: 222 ADSDECCGGLPPLCDVQLFVPGCPPSPWSILDGLLRLKSE 261


>gi|78221590|ref|YP_383337.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Geobacter
           metallireducens GS-15]
 gi|78192845|gb|ABB30612.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Geobacter
           metallireducens GS-15]
          Length = 262

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 41/119 (34%), Positives = 66/119 (55%)

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           G   C  +    S   +DL RFG    ASPR +D + + G +T  M  AL + ++ +PEP
Sbjct: 144 GCNACEADTNVLSTVGFDLGRFGIQFVASPRHADGIFITGPVTENMHLALLKTWEAIPEP 203

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           +  I+ G+CA  GG +  S  V  G D ++P+D+Y+PGCPP    ++ G+L +  ++  
Sbjct: 204 KIAIAAGACAINGGPFIDSPDVHNGADGLIPIDLYIPGCPPHPLTILDGLLRILGRLEE 262


>gi|15897890|ref|NP_342495.1| formate hydrogenlyase subunit 7 (hycG) [Sulfolobus solfataricus P2]
 gi|227827480|ref|YP_002829260.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Sulfolobus
           islandicus M.14.25]
 gi|229578987|ref|YP_002837385.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Sulfolobus
           islandicus Y.G.57.14]
 gi|229582260|ref|YP_002840659.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Sulfolobus
           islandicus Y.N.15.51]
 gi|229584694|ref|YP_002843196.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Sulfolobus
           islandicus M.16.27]
 gi|284173589|ref|ZP_06387558.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Sulfolobus
           solfataricus 98/2]
 gi|13814203|gb|AAK41285.1| Formate hydrogenlyase subunit 7 (hycG) [Sulfolobus solfataricus P2]
 gi|227459276|gb|ACP37962.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Sulfolobus
           islandicus M.14.25]
 gi|228009701|gb|ACP45463.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Sulfolobus
           islandicus Y.G.57.14]
 gi|228012976|gb|ACP48737.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Sulfolobus
           islandicus Y.N.15.51]
 gi|228019744|gb|ACP55151.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Sulfolobus
           islandicus M.16.27]
 gi|261602599|gb|ACX92202.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Sulfolobus
           solfataricus 98/2]
          Length = 201

 Score = 75.9 bits (185), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 37/114 (32%), Positives = 61/114 (53%), Gaps = 12/114 (10%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E+   S P YD+ RF      +PR +D ++V G +T KM   L++ Y+ MPEP+ VI
Sbjct: 98  CNMELKLISSPEYDMTRFSIFFTNTPRHADALVVMGVMTEKMKEVLKKAYEAMPEPKVVI 157

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVD--IYVPGCPPTAEALIYGILLLQKK 176
            +G+CA  GG               VP++  + +PGCPP    ++  ++ ++ K
Sbjct: 158 LLGACAISGGIIGEG----------VPLEAVVEIPGCPPNPFTILEALMKVKGK 201


>gi|227830172|ref|YP_002831952.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Sulfolobus
           islandicus L.S.2.15]
 gi|227456620|gb|ACP35307.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Sulfolobus
           islandicus L.S.2.15]
          Length = 201

 Score = 75.9 bits (185), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 37/114 (32%), Positives = 61/114 (53%), Gaps = 12/114 (10%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E+   S P YD+ RF      +PR +D ++V G +T KM   L++ Y+ MPEP+ VI
Sbjct: 98  CNMELKLISSPEYDMTRFSIFFTNTPRHADALVVMGVMTEKMKEVLKKAYEAMPEPKVVI 157

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVD--IYVPGCPPTAEALIYGILLLQKK 176
            +G+CA  GG               VP++  + +PGCPP    ++  ++ ++ K
Sbjct: 158 LLGACAISGGIIGEG----------VPLEAVVEIPGCPPNPFTILEALMKVKGK 201


>gi|212224722|ref|YP_002307958.1| Hydrogenase 4, component I or formate hydrogen lyase, subunit 7
           [Thermococcus onnurineus NA1]
 gi|212009679|gb|ACJ17061.1| Hydrogenase 4, component I or formate hydrogen lyase, subunit 7
           [Thermococcus onnurineus NA1]
          Length = 273

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 45/144 (31%), Positives = 70/144 (48%), Gaps = 32/144 (22%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMP-EPRYV 123
           C +E++    P YD+ERFG     SPR +  ++V+G LT +     +     MP EPR +
Sbjct: 23  CDIEIIDVLTPFYDVERFGIKLVGSPRHAHALLVSGPLTRQAYYGAKETIKAMPPEPRVI 82

Query: 124 ISMGSCANGGGYYHYSYSVVR--------------------------GCDRIVPVDIYVP 157
           +++G+C   GG ++  Y V R                            +++ PV IY+P
Sbjct: 83  VAIGTCTCSGGIFYNGYPVYRRPESGREGSEYPRRGGIAELIADLRDEGEKVGPV-IYIP 141

Query: 158 GCPPTAEALIYGIL----LLQKKI 177
           GCPP  E +IYGI     L++KK+
Sbjct: 142 GCPPRPEEIIYGIAQLVGLVEKKL 165


>gi|124485396|ref|YP_001030012.1| hypothetical protein Mlab_0571 [Methanocorpusculum labreanum Z]
 gi|124362937|gb|ABN06745.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Methanocorpusculum
           labreanum Z]
          Length = 159

 Score = 75.5 bits (184), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 33/108 (30%), Positives = 64/108 (59%), Gaps = 1/108 (0%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E++    P+YD+E++G     +PR++DV++V G ++ +    L  ++D++PEP+ V+
Sbjct: 29  CDIEILACLAPKYDIEQYGIYVHNNPREADVILVTGGMSPQWLDKLPDLWDRVPEPKAVV 88

Query: 125 SMGSCANGGGYYHYSYSVVR-GCDRIVPVDIYVPGCPPTAEALIYGIL 171
           ++G+C   G  ++    ++     + +PV   VPGCPP    +I  IL
Sbjct: 89  TIGNCPISGCVFNRPGKLIDPPVSKYIPVTAAVPGCPPRPSEIISAIL 136


>gi|164513238|emb|CAP11712.1| NADH dehydrogenase subunit K [Aglaia korthalsii]
 gi|164513240|emb|CAP11713.1| NADH dehydrogenase subunit K [Aglaia odoratissima]
          Length = 60

 Score = 75.1 bits (183), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 30/51 (58%), Positives = 44/51 (86%)

Query: 76  RYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISM 126
           R+D +R+G  PR+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+M
Sbjct: 10  RFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAM 60


>gi|195953675|ref|YP_002121965.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Hydrogenobaculum sp.
           Y04AAS1]
 gi|195933287|gb|ACG57987.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Hydrogenobaculum sp.
           Y04AAS1]
          Length = 165

 Score = 75.1 bits (183), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 38/108 (35%), Positives = 55/108 (50%), Gaps = 1/108 (0%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C  E+   S   YD+ERFG    ASP+  DV+ + G +T  M   L       P P+ +I
Sbjct: 53  CEYELTALSNVFYDIERFGIKFVASPKHVDVLTITGPITRNMYKPLLDAIQNTPNPKVII 112

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRI-VPVDIYVPGCPPTAEALIYGIL 171
           ++G C+  GG +  +Y +V G   I +   I + GCPP    +I GIL
Sbjct: 113 AIGDCSIDGGLFKGAYGIVGGLKDINIEPHILIRGCPPHPRDIISGIL 160


>gi|84490226|ref|YP_448458.1| EhbM [Methanosphaera stadtmanae DSM 3091]
 gi|84373545|gb|ABC57815.1| EhbM [Methanosphaera stadtmanae DSM 3091]
          Length = 150

 Score = 75.1 bits (183), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 39/136 (28%), Positives = 76/136 (55%), Gaps = 10/136 (7%)

Query: 46  LVTWARTGSLMWM---TFGLACCAVEMMQASM-PRYDLERFGFAPRASPRQSDVMIVAGT 101
           L + AR  ++  M   T G   C +E++   + P++D+E++      +PR++DV++V+G 
Sbjct: 3   LKSQARKKAIHLMLVYTGGCNGCDIEIVNTVLSPKFDIEQYNVYLTWNPREADVLVVSGP 62

Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY------SYSVVRGCDRIVPVDIY 155
           +T      L ++Y+ +P+P+ V+++G+CA  GG Y        S  +    D ++PVD  
Sbjct: 63  VTYWTKEPLLKIYEAIPKPKLVVAVGACALTGGVYKNIHGEIPSEEIEGPVDNVIPVDAK 122

Query: 156 VPGCPPTAEALIYGIL 171
           +PGC    E ++ G++
Sbjct: 123 IPGCAVRPEDVVAGVV 138


>gi|323474538|gb|ADX85144.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Sulfolobus
           islandicus REY15A]
          Length = 201

 Score = 75.1 bits (183), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 36/112 (32%), Positives = 60/112 (53%), Gaps = 12/112 (10%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E+   S P YD+ RF      +PR +D ++V G +T KM   L++ Y+ MPEP+ VI
Sbjct: 98  CNMELKLISSPEYDMTRFSIFFTNTPRHADALVVMGVMTEKMKEVLKKAYEAMPEPKVVI 157

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVD--IYVPGCPPTAEALIYGILLLQ 174
            +G+CA  GG               VP++  + +PGCPP    ++  ++ ++
Sbjct: 158 LLGACAISGGIIGEG----------VPLEAVVEIPGCPPNPFTILEALMKVK 199


>gi|323477271|gb|ADX82509.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Sulfolobus
           islandicus HVE10/4]
          Length = 201

 Score = 74.7 bits (182), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 36/112 (32%), Positives = 60/112 (53%), Gaps = 12/112 (10%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E+   S P YD+ RF      +PR +D ++V G +T KM   L++ Y+ MPEP+ VI
Sbjct: 98  CNMELKLISSPEYDMTRFSIFFTNTPRHADALVVMGVMTEKMKEVLKKAYEAMPEPKVVI 157

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVD--IYVPGCPPTAEALIYGILLLQ 174
            +G+CA  GG               VP++  + +PGCPP    ++  ++ ++
Sbjct: 158 LLGACAISGGIIGEG----------VPLEAVVEIPGCPPNPFTILEALMKVK 199


>gi|164513254|emb|CAP11720.1| NADH dehydrogenase subunit K [Dioscorea bulbifera]
 gi|164513256|emb|CAP11721.1| NADH dehydrogenase subunit K [Dioscorea schimperiana]
          Length = 52

 Score = 74.3 bits (181), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 30/52 (57%), Positives = 44/52 (84%)

Query: 78  DLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSC 129
           D +R+G  PR+SPRQ+D+++ AGT+T KMA +L R+Y+QM EP+YVI+MG+C
Sbjct: 1   DFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMAEPKYVIAMGAC 52


>gi|148643124|ref|YP_001273637.1| energy-converting hydrogenase B, subunit M, EhbM
           [Methanobrevibacter smithii ATCC 35061]
 gi|222445361|ref|ZP_03607876.1| hypothetical protein METSMIALI_00989 [Methanobrevibacter smithii
           DSM 2375]
 gi|261350078|ref|ZP_05975495.1| putative hydrogenase, group 4, EchC subunit [Methanobrevibacter
           smithii DSM 2374]
 gi|148552141|gb|ABQ87269.1| energy-converting hydrogenase B, subunit M, EhbM
           [Methanobrevibacter smithii ATCC 35061]
 gi|222434926|gb|EEE42091.1| hypothetical protein METSMIALI_00989 [Methanobrevibacter smithii
           DSM 2375]
 gi|288860864|gb|EFC93162.1| putative hydrogenase, group 4, EchC subunit [Methanobrevibacter
           smithii DSM 2374]
          Length = 148

 Score = 74.3 bits (181), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 43/136 (31%), Positives = 73/136 (53%), Gaps = 8/136 (5%)

Query: 50  ARTGSLMWM-TFGLACCAVEMMQASM-PRYDLERFGFAPRASPRQSDVMIVAGTLTNKMA 107
           AR   LM + T G   C +E++ + + PR+D E++      +PR++DV++V G +T    
Sbjct: 9   ARAIHLMLVYTGGCNGCDIEIVNSVLSPRFDAEQYKVFLTWNPREADVLVVTGPVTKLNR 68

Query: 108 SALRRVYDQMPEPRYVISMGSCANGGGYYHY------SYSVVRGCDRIVPVDIYVPGCPP 161
             L  +Y  +PEP+ V++ GSCA  GG Y        S  +    + I+PVD  VPGC  
Sbjct: 69  KPLEEIYKAIPEPKLVVAAGSCALMGGVYKNIHGDIPSEEIEGPVENIIPVDAKVPGCAV 128

Query: 162 TAEALIYGILLLQKKI 177
             + ++ G++ +  K+
Sbjct: 129 RPQDVLSGVVSILPKL 144


>gi|288561258|ref|YP_003424744.1| energy-converting hydrogenase B subunit M EhbM [Methanobrevibacter
           ruminantium M1]
 gi|288543968|gb|ADC47852.1| energy-converting hydrogenase B subunit M EhbM [Methanobrevibacter
           ruminantium M1]
          Length = 148

 Score = 74.3 bits (181), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 40/136 (29%), Positives = 75/136 (55%), Gaps = 10/136 (7%)

Query: 46  LVTWARTGSLMWM---TFGLACCAVEMMQASM-PRYDLERFGFAPRASPRQSDVMIVAGT 101
           L T +R+ ++  M   T G   C +E++ A + P++D+E++G     +PR++D+++V G 
Sbjct: 3   LKTLSRSKAIHIMLVYTGGCNGCDIEIVNAVLSPKFDMEQYGVFLTWNPREADILVVTGP 62

Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY------SYSVVRGCDRIVPVDIY 155
           +T      L  +Y+ +P P+ V++ GSCA  GG Y        S  +    + ++PVD  
Sbjct: 63  VTYDNRKPLEDIYNAIPNPKLVVAAGSCALMGGVYKNCHGDIPSEEIEGPVENVIPVDAK 122

Query: 156 VPGCPPTAEALIYGIL 171
           VPGC    + ++ G++
Sbjct: 123 VPGCAVRPQDVLAGVV 138


>gi|183981668|ref|YP_001849959.1| oxidoreductase [Mycobacterium marinum M]
 gi|183174994|gb|ACC40104.1| oxidoreductase [Mycobacterium marinum M]
          Length = 159

 Score = 73.9 bits (180), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 45/106 (42%), Positives = 61/106 (57%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C VE+  A  P YD ERFG    ASPR +D ++V G +T  MA  L+      P+PR VI
Sbjct: 48  CEVEISGAFGPVYDAERFGARLVASPRHADALLVTGVVTRNMAQPLKNTLAATPQPRVVI 107

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGI 170
           + G CA   G +  +Y VV     +VPVD+ VPGCPPT + ++  +
Sbjct: 108 ACGDCALNRGVFADAYGVVGAVSEVVPVDVEVPGCPPTPDQVVAAL 153


>gi|269128891|ref|YP_003302261.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Thermomonospora
           curvata DSM 43183]
 gi|268313849|gb|ACZ00224.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Thermomonospora
           curvata DSM 43183]
          Length = 158

 Score = 73.6 bits (179), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 43/100 (43%), Positives = 61/100 (61%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E+     P +D ER+G    ASPR +D ++V G +T  M +ALRR Y+ +PEP+ VI
Sbjct: 47  CELEIASVFGPVHDAERYGARLVASPRHADALLVTGPVTRNMETALRRTYEAVPEPKVVI 106

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164
           ++G CA   G +  +Y V      +VPVD+ VPGCPP  E
Sbjct: 107 ALGDCARNCGVFAGAYGVAGAVGDVVPVDVEVPGCPPRPE 146


>gi|294340395|emb|CAZ88776.1| Putative NADH ubiquinone oxidoreductase, 20 kDa subunit [Thiomonas
           sp. 3As]
          Length = 273

 Score = 72.8 bits (177), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 41/98 (41%), Positives = 59/98 (60%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C  E+     P Y+L R G     SPR +D+++V G +T  M   L R Y+ MP+PR+V+
Sbjct: 149 CESELQALLNPFYNLHRLGVFFTPSPRFADLLLVTGPVTAAMREPLLRTYEAMPQPRWVM 208

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162
           + G+CA GGG     Y+   G D I+PVD+++PGCPP 
Sbjct: 209 AAGTCATGGGTNGGGYACHEGLDGILPVDVWLPGCPPN 246


>gi|284997591|ref|YP_003419358.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Sulfolobus
           islandicus L.D.8.5]
 gi|284445486|gb|ADB86988.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Sulfolobus
           islandicus L.D.8.5]
          Length = 201

 Score = 72.8 bits (177), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 36/114 (31%), Positives = 60/114 (52%), Gaps = 12/114 (10%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E+   S P YD+ RF      +PR +D ++V G +T KM   L++ Y+ MPEP+ VI
Sbjct: 98  CNMELKLISSPEYDMTRFSIFFTNTPRHADALVVMGVMTEKMKEVLKKAYEAMPEPKVVI 157

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVD--IYVPGCPPTAEALIYGILLLQKK 176
            +G+CA  GG               VP++  + + GCPP    ++  ++ ++ K
Sbjct: 158 LLGACAISGGIIGEG----------VPLEAVVEISGCPPNPFTILEALMKVKGK 201


>gi|238619636|ref|YP_002914462.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Sulfolobus
           islandicus M.16.4]
 gi|238380706|gb|ACR41794.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Sulfolobus
           islandicus M.16.4]
          Length = 201

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 36/114 (31%), Positives = 60/114 (52%), Gaps = 12/114 (10%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E+   S P YD+ RF      +PR +D ++V G +T KM   L++ Y+ M EP+ VI
Sbjct: 98  CNMELKLISSPEYDMTRFSIFFTNTPRHADALVVMGVMTEKMKEVLKKAYEAMQEPKVVI 157

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVD--IYVPGCPPTAEALIYGILLLQKK 176
            +G+CA  GG               VP++  + +PGCPP    ++  ++ ++ K
Sbjct: 158 LLGACAISGGIIGEG----------VPLEAVVEIPGCPPNPFTILEALMKVKGK 201


>gi|164513262|emb|CAP11724.1| NADH dehydrogenase subunit K [Paeonia kavachensis]
 gi|164513264|emb|CAP11725.1| NADH dehydrogenase [Paeonia tenuifolia]
 gi|164513266|emb|CAP11726.1| NADH dehydrogenase [Sophora microphylla]
 gi|164513268|emb|CAP11727.1| NADH dehydrogenase [Sophora toromiro]
          Length = 63

 Score = 71.6 bits (174), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 29/62 (46%), Positives = 45/62 (72%)

Query: 58  MTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQM 117
           + +G +CC +E       R+D +R+G  PR+SPRQ+D+++ AGT+T KMA +L R+Y+QM
Sbjct: 2   LLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQM 61

Query: 118 PE 119
           PE
Sbjct: 62  PE 63


>gi|164513258|emb|CAP11722.1| NADH dehydrogenase subunit K [Hieracium leyianum]
 gi|164513260|emb|CAP11723.1| NADH dehydrogenase subunit K [Hieracium pellucidum]
          Length = 61

 Score = 71.6 bits (174), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 29/60 (48%), Positives = 44/60 (73%)

Query: 60  FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119
           +G +CC +E       R+D +R+G  PR+SPRQ+D+++ AGT+T KMA +L R+Y+QMPE
Sbjct: 2   YGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPE 61


>gi|73658458|emb|CAI99039.1| NADH dehydrogenase 32 kD subunit [Arabidopsis thaliana]
 gi|73658460|emb|CAI99042.1| NADH dehydrogenase 32 kD subunit [Arabidopsis thaliana]
          Length = 114

 Score = 71.6 bits (174), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 33/60 (55%), Positives = 44/60 (73%), Gaps = 1/60 (1%)

Query: 121 RYVISMGSCANGGGYYHY-SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           +YVI+MG+C   GG +   SYS VRG D+++PVD+Y+PGCPP  EA+I  I  L+KKI R
Sbjct: 1   KYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKKIAR 60


>gi|118617491|ref|YP_905823.1| oxidoreductase [Mycobacterium ulcerans Agy99]
 gi|118569601|gb|ABL04352.1| oxidoreductase [Mycobacterium ulcerans Agy99]
          Length = 159

 Score = 71.2 bits (173), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 44/106 (41%), Positives = 60/106 (56%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C VE+  A  P YD ER G    ASPR +D ++V G +T  MA  L+      P+PR VI
Sbjct: 48  CEVEISGAFGPVYDAERVGARLVASPRHADALLVTGVVTRNMAQPLKNTLAATPQPRVVI 107

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGI 170
           + G CA   G +  +Y VV     +VPVD+ VPGCPPT + ++  +
Sbjct: 108 ACGDCALNRGVFADAYGVVGAVSEVVPVDVEVPGCPPTPDQVVAAL 153


>gi|13542288|ref|NP_111976.1| Ni,Fe-hydrogenase III small subunit [Thermoplasma volcanium GSS1]
 gi|14325721|dbj|BAB60624.1| formate hydrogenlyase subunit 2 [Thermoplasma volcanium GSS1]
          Length = 222

 Score = 70.9 bits (172), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 41/116 (35%), Positives = 59/116 (50%), Gaps = 6/116 (5%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E +    P+YD  R G     +PR +D +IV G +T  M  AL R Y+ MPEP+ VI
Sbjct: 102 CNMEFLSIFSPQYDANRLGIFMVNTPRYADALIVMGVMTPGMKEALDRAYEAMPEPKLVI 161

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           +MG+CA  GG    +       DR    ++ + GCPP+   LI  +    K  R+ 
Sbjct: 162 AMGACAVTGGIMGEN-----PLDR-EKYNVEIAGCPPSPYTLIAALNAAMKDKRKA 211


>gi|244280|gb|AAB21279.1| NADH:ubiquinone oxidoreductase (complex I) iron-sulfur protein
           fraction 20 kda polypeptide peptides T-4/T-7 [cattle,
           heart, Peptide Mitochondrial Partial, 33 aa]
          Length = 33

 Score = 70.9 bits (172), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 31/33 (93%), Positives = 33/33 (100%)

Query: 112 RVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR 144
           +VYDQMPEPRYV+SMGSCANGGGYYHYSYSVVR
Sbjct: 1   KVYDQMPEPRYVVSMGSCANGGGYYHYSYSVVR 33


>gi|148259651|ref|YP_001233778.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Acidiphilium
           cryptum JF-5]
 gi|146401332|gb|ABQ29859.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Acidiphilium
           cryptum JF-5]
          Length = 164

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 57/109 (52%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E+      R  +   G A     R +D+++V G  T  +A A+R+    M  PR+V+
Sbjct: 39  CEIEIAACRRLRGGMAAHGIAMVEDLRAADILLVTGVATRNLAEAVRKSLAGMAPPRFVV 98

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLL 173
           + G CA  GG +    +V+ G   ++PVD+ + GCPP    ++ G++ L
Sbjct: 99  AAGDCALDGGVFKGVPAVLGGVQAVIPVDLLIAGCPPAPRQILAGLVAL 147


>gi|326403379|ref|YP_004283460.1| putative NADH ubiquinone oxidoreductase [Acidiphilium multivorum
           AIU301]
 gi|325050240|dbj|BAJ80578.1| putative NADH ubiquinone oxidoreductase [Acidiphilium multivorum
           AIU301]
          Length = 164

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 57/109 (52%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E+      R  +   G A     R +D+++V G  T  +A A+R+    M  PR+V+
Sbjct: 39  CEIEIAACRRLRGGMAAQGIAMVEDLRAADILLVTGVATRNLAEAVRKSLAGMAPPRFVV 98

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLL 173
           + G CA  GG +    +V+ G   ++PVD+ + GCPP    ++ G++ L
Sbjct: 99  AAGDCALDGGVFKGVPAVLGGVQAVIPVDLLIAGCPPAPRQILAGLVAL 147


>gi|240102115|ref|YP_002958423.1| formate hydrogenlyase II subunit H (Mhy2H) [Thermococcus
           gammatolerans EJ3]
 gi|239909668|gb|ACS32559.1| formate hydrogenlyase II subunit H (Mhy2H) [Thermococcus
           gammatolerans EJ3]
          Length = 283

 Score = 68.6 bits (166), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 42/135 (31%), Positives = 62/135 (45%), Gaps = 28/135 (20%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMP-EPRYV 123
           C +E+     P YD ER G    ASPR +  M   G LT +   A +     MP +PR +
Sbjct: 19  CEIELFDILTPYYDAERLGVRLAASPRHAHAMAATGPLTRQAYYAAKEAIKAMPPKPRII 78

Query: 124 ISMGSCANGGGYYHYSYSVVR---------------GCDRIV-----------PVDIYVP 157
           +++G+CA  GG ++  Y + R               G   +V           PV +Y+P
Sbjct: 79  VAIGTCACSGGIFYNGYPIYRRPESGREGQEYPRRGGIFELVQDLRDEGEYVGPV-VYIP 137

Query: 158 GCPPTAEALIYGILL 172
           GCPP  E ++YG+ L
Sbjct: 138 GCPPRPEEILYGVAL 152


>gi|213026204|ref|ZP_03340651.1| hydrogenase activity [Salmonella enterica subsp. enterica serovar
           Typhi str. 404ty]
          Length = 58

 Score = 67.0 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 28/53 (52%), Positives = 36/53 (67%)

Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILL 172
           P+  IS G+C N GG +H  Y V  G D+IVPVD+Y+PGCPPT  A +YG  +
Sbjct: 5   PKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAM 57


>gi|291515582|emb|CBK64792.1| Ni,Fe-hydrogenase III small subunit [Alistipes shahii WAL 8301]
          Length = 254

 Score = 66.2 bits (160), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 42/120 (35%), Positives = 64/120 (53%), Gaps = 1/120 (0%)

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           G A   +E+       +DL RFG    ASPR +D ++V+G +T  MA AL   YD + EP
Sbjct: 135 GDASVEMELGATGNVNFDLGRFGIGFTASPRHADGVVVSGPVTVNMAEALEICYDAVAEP 194

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL-LLQKKIRR 179
           + +++ GS A  GG +  S +V R        D+++PG P      I G++ LL +K R+
Sbjct: 195 KILVACGSEACSGGLFADSRAVDRTFFDTHTPDLWLPGAPTHPMTYIDGMMNLLGRKTRQ 254


>gi|149193854|ref|ZP_01870952.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Caminibacter
           mediatlanticus TB-2]
 gi|149135807|gb|EDM24285.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Caminibacter
           mediatlanticus TB-2]
          Length = 140

 Score = 66.2 bits (160), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 35/119 (29%), Positives = 62/119 (52%), Gaps = 1/119 (0%)

Query: 65  CAVEMMQASMP-RYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYV 123
           C VE+  + M  R+DL++ G     +   +D+ ++ G +T +    L+ V     +P  V
Sbjct: 20  CDVEIAASVMSSRFDLQKLGCEYIETSEDADIFMITGPVTARSLPFLKEVIKNHKKPYVV 79

Query: 124 ISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
           IS+G+C+   G +  SY ++   D  V VD+ V GCPP  +A++ G+      ++R  N
Sbjct: 80  ISLGTCSVTCGIFRDSYPILGPVDSYVNVDVNVAGCPPRPQAILEGVKTAIDILKRKNN 138


>gi|48477897|ref|YP_023603.1| formate hydrogenlyase subunit 7 [Picrophilus torridus DSM 9790]
 gi|48430545|gb|AAT43410.1| formate hydrogenlyase subunit 7 [Picrophilus torridus DSM 9790]
          Length = 202

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 31/106 (29%), Positives = 51/106 (48%), Gaps = 8/106 (7%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C  E+   S+P YDL R+      +PR +D +I++G     M   +      MP+P Y+I
Sbjct: 100 CNSELFSISIPEYDLTRYHIFFTNTPRHADAIILSGIYNESMKDVIDNALGAMPKPGYLI 159

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGI 170
            +G+CA  GG        + G    +   + +PGCPP    ++ G+
Sbjct: 160 LLGACALSGG--------IIGSGHEIKAVLEIPGCPPNPYTILKGL 197


>gi|124515569|gb|EAY57079.1| putative hydrogenase-3 (HycG) [Leptospirillum rubarum]
 gi|206601799|gb|EDZ38282.1| Putative NADH ubiquinone oxidoreductase, 20 kDa subunit
           [Leptospirillum sp. Group II '5-way CG']
          Length = 169

 Score = 65.1 bits (157), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 35/111 (31%), Positives = 59/111 (53%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E+   +   Y  ER G    ASPR +D+++V G ++ +M   L   ++ M  P+ V+
Sbjct: 49  CELELHAMNGSYYAPERDGIRFVASPRHADLLLVTGPVSCQMEQPLLDTHEAMASPKTVL 108

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175
           ++G CA  GG +  S +V  G D + P    VPGCPP+   ++  +  L +
Sbjct: 109 AVGDCACQGGVFRGSPAVRNGVDGLFPEARKVPGCPPSPSDILRALRGLSR 159


>gi|313157372|gb|EFR56795.1| NADH ubiquinone oxidoreductase, 20 Kd subunit [Alistipes sp. HGB5]
          Length = 254

 Score = 65.1 bits (157), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 43/119 (36%), Positives = 61/119 (51%), Gaps = 1/119 (0%)

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           G A   +E+       +DL R+G    ASPR +D ++V+G +T  MA ALR   D +  P
Sbjct: 135 GDASVEMELNATGNVNFDLGRYGIGFTASPRHADGVVVSGPITVNMAEALRICCDAVANP 194

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL-LLQKKIR 178
           + ++  GS A  GG +  S +V R        D+++PG P      I GIL LL KK R
Sbjct: 195 KILVVCGSEACSGGLFAGSRAVDRTFFDTHAADLWLPGAPTHPMTFIDGILNLLGKKKR 253


>gi|114329051|ref|YP_746208.1| formate hydrogenlyase subunit 7 [Granulibacter bethesdensis
           CGDNIH1]
 gi|114317225|gb|ABI63285.1| formate hydrogenlyase subunit 7 [Granulibacter bethesdensis
           CGDNIH1]
          Length = 174

 Score = 65.1 bits (157), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 57/110 (51%), Gaps = 1/110 (0%)

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           G + C +E+         L R G     SP  +D++++ G   + + SA+ + ++ MP P
Sbjct: 55  GGSACLLELEALRAAPGLLARHGLRFVTSPLHADILLITGDGCHNLTSAIHQAWEAMPGP 114

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGI 170
           R+ I++G  A G G    SY+     + I P D+ +PG PP A+ ++ G+
Sbjct: 115 RWAIAVGDGAAGDGLLRGSYASTGNMEEI-PFDLVIPGSPPAADTILSGL 163


>gi|308375059|ref|ZP_07667937.1| oxidoreductase [Mycobacterium tuberculosis SUMu007]
 gi|308347618|gb|EFP36469.1| oxidoreductase [Mycobacterium tuberculosis SUMu007]
          Length = 143

 Score = 63.9 bits (154), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 31/66 (46%), Positives = 40/66 (60%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C VE+  A  P YD ERFG    ASPR +D ++V G +T+ MA  LR+  +  P PR VI
Sbjct: 36  CEVEISGAFGPVYDAERFGARLVASPRHADALLVTGVVTHNMAGPLRKTLEATPRPRVVI 95

Query: 125 SMGSCA 130
           + G CA
Sbjct: 96  ACGDCA 101


>gi|268679821|ref|YP_003304252.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Sulfurospirillum
           deleyianum DSM 6946]
 gi|268617852|gb|ACZ12217.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Sulfurospirillum
           deleyianum DSM 6946]
          Length = 138

 Score = 63.9 bits (154), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 28/107 (26%), Positives = 57/107 (53%), Gaps = 1/107 (0%)

Query: 65  CAVEMMQASM-PRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYV 123
           C VE++ + + P++  +  G      P  +++++V G +T +    L+    Q+P  + V
Sbjct: 18  CDVEILASVLLPKFGFDALGCVYTNDPTLANILLVTGAITARSTPYLQAALKQLPSKKIV 77

Query: 124 ISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGI 170
           +++G C   GG +  SY++    D  V VD+ + GCPP+ + +  G+
Sbjct: 78  VALGICPISGGVFRDSYAITGPLDTFVDVDVNISGCPPSPKEIAQGL 124


>gi|213863448|ref|ZP_03386703.1| hydrogenase activity [Salmonella enterica subsp. enterica serovar
           Typhi str. M223]
          Length = 72

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 39/71 (54%)

Query: 77  YDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY 136
           +D ERFG     SPR +D+++  G +T  M S   R +   P+P+  IS G+C N GG +
Sbjct: 2   FDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIF 61

Query: 137 HYSYSVVRGCD 147
           H  Y V  G D
Sbjct: 62  HDLYCVWGGTD 72


>gi|58038760|ref|YP_190724.1| hypothetical protein GOX0285 [Gluconobacter oxydans 621H]
 gi|58001174|gb|AAW60068.1| Hypothetical protein GOX0285 [Gluconobacter oxydans 621H]
          Length = 161

 Score = 62.0 bits (149), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 60/111 (54%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E+   +   + LE+ GF   + P  +D +++ G +T   A  + RV+  MP  R +I
Sbjct: 50  CFMEIESLNGSAFALEQAGFVCVSDPADADWLLLTGAVTRVCAEMVDRVWRAMPPGRSLI 109

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175
           ++G+CA  GG +   Y+ + G + + PV   + GCPP+ + ++  +  L +
Sbjct: 110 AVGACAVDGGPFPAGYATLGGLEALTPVRRSIAGCPPSPDDILRALQELAQ 160


>gi|117927935|ref|YP_872486.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Acidothermus
           cellulolyticus 11B]
 gi|117648398|gb|ABK52500.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Acidothermus
           cellulolyticus 11B]
          Length = 269

 Score = 62.0 bits (149), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 38/113 (33%), Positives = 53/113 (46%), Gaps = 18/113 (15%)

Query: 68  EMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMG 127
           E++    P YD+ R G    ASPR +DV++V G  +  MA+ L R     P P  VI+ G
Sbjct: 141 EVLALLNPVYDIHRLGIFFTASPRHADVLLVTGVGSRGMAAPLARTLQAAPRPLVVIAAG 200

Query: 128 SCANGGGYYHYSYSVVRGCDRIVP------------------VDIYVPGCPPT 162
           + A  GG  H +Y+   G   ++                   VDI+VPG PPT
Sbjct: 201 TDAISGGLVHPTYATSGGIGDLIAATPDSAGATGAADGDPVRVDIWVPGSPPT 253


>gi|313836232|gb|EFS73946.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes
           HL037PA2]
 gi|314927669|gb|EFS91500.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes
           HL044PA1]
 gi|314971332|gb|EFT15430.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes
           HL037PA3]
 gi|328906272|gb|EGG26047.1| NADH ubiquinone oxidoreductase, 20 Kd subunit [Propionibacterium
           sp. P08]
          Length = 132

 Score = 61.6 bits (148), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 42/125 (33%), Positives = 64/125 (51%), Gaps = 8/125 (6%)

Query: 45  QLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTN 104
           + + W   GS+  +   LACC VE  + ++P     R      A+     V+ V+GT+T 
Sbjct: 2   KFIDWFADGSVYVVDLALACCGVE-SEVAVPATAAVREEIPDGAAI----VVFVSGTVTT 56

Query: 105 KMASALRRVYDQMP--EPRYVISMGSCANGGGYYHYSYSVVRGC-DRIVPVDIYVPGCPP 161
            +ASA+R   D++    P  V++ G+CA  GG Y  S  V  G  D  +  D ++PGCPP
Sbjct: 57  GLASAVRVTVDELKRNHPVDVVAFGACACAGGPYWDSAGVAAGLPDAGLDADHWIPGCPP 116

Query: 162 TAEAL 166
             +AL
Sbjct: 117 GPDAL 121


>gi|148828675|gb|ABR13960.1| NDH-K [Thuja plicata]
          Length = 103

 Score = 61.6 bits (148), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 43/75 (57%)

Query: 27  SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP 86
           S +  + T    + T+++ L  WAR  SL  + +G +CC +E       R+D +R+G  P
Sbjct: 29  SSLLHQATPNSVISTTLNDLSNWARLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVP 88

Query: 87  RASPRQSDVMIVAGT 101
           R+SPRQ+D++I   T
Sbjct: 89  RSSPRQADLLITPPT 103


>gi|323177391|gb|EFZ62979.1| hydrogenase-4 component I [Escherichia coli 1180]
          Length = 170

 Score = 61.2 bits (147), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 41/75 (54%)

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           G   C +E+  A  P +D ERFG    +SPR +D+++  G +T  M     R Y+  P+ 
Sbjct: 40  GCNACEIEIFAAITPVFDAERFGIKVISSPRHADILLFTGAVTRAMRMPALRAYESAPDH 99

Query: 121 RYVISMGSCANGGGY 135
           +  +S G+C  GGG+
Sbjct: 100 KICVSYGACGAGGGF 114


>gi|300820847|ref|ZP_07100997.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 119-7]
 gi|331669229|ref|ZP_08370077.1| hydrogenase-4 component I [Escherichia coli TA271]
 gi|331678474|ref|ZP_08379149.1| hydrogenase-4 component I [Escherichia coli H591]
 gi|300526600|gb|EFK47669.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 119-7]
 gi|331064423|gb|EGI36334.1| hydrogenase-4 component I [Escherichia coli TA271]
 gi|331074934|gb|EGI46254.1| hydrogenase-4 component I [Escherichia coli H591]
          Length = 173

 Score = 61.2 bits (147), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 41/75 (54%)

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           G   C +E+  A  P +D ERFG    +SPR +D+++  G +T  M     R Y+  P+ 
Sbjct: 43  GCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMRMPALRAYESAPDH 102

Query: 121 RYVISMGSCANGGGY 135
           +  +S G+C  GGG+
Sbjct: 103 KICVSYGACGAGGGF 117


>gi|256017364|ref|ZP_05431229.1| hydrogenase 4, Fe-S subunit [Shigella sp. D9]
 gi|323156092|gb|EFZ42251.1| hydrogenase-4 component I [Escherichia coli EPECa14]
 gi|323944709|gb|EGB40776.1| NADH ubiquinone oxidoreductase [Escherichia coli H120]
          Length = 173

 Score = 60.8 bits (146), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 41/75 (54%)

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           G   C +E+  A  P +D ERFG    +SPR +D+++  G +T  M     R Y+  P+ 
Sbjct: 43  GCNACEIEIFAAITPVFDAERFGIKVISSPRHADILLFTGAVTRAMRMPALRAYESAPDH 102

Query: 121 RYVISMGSCANGGGY 135
           +  +S G+C  GGG+
Sbjct: 103 KICVSYGACGAGGGF 117


>gi|307312517|ref|ZP_07592150.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Escherichia coli W]
 gi|306907440|gb|EFN37944.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Escherichia coli W]
 gi|323184454|gb|EFZ69829.1| hydrogenase-4 component I [Escherichia coli 1357]
          Length = 173

 Score = 60.8 bits (146), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 41/75 (54%)

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           G   C +E+  A  P +D ERFG    +SPR +D+++  G +T  M     R Y+  P+ 
Sbjct: 43  GCNACEIEIFAAITPVFDAERFGIKVISSPRHADILLFTGAVTRAMRMPALRAYESAPDH 102

Query: 121 RYVISMGSCANGGGY 135
           +  +S G+C  GGG+
Sbjct: 103 KICVSYGACGAGGGF 117


>gi|297725319|ref|NP_001175023.1| Os07g0116900 [Oryza sativa Japonica Group]
 gi|255677459|dbj|BAH93751.1| Os07g0116900 [Oryza sativa Japonica Group]
          Length = 114

 Score = 60.8 bits (146), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 31/49 (63%), Positives = 33/49 (67%)

Query: 62  LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASAL 110
           LA CAVEMM A    YD +RF    R SPRQSD MI+ GTLTNKM  AL
Sbjct: 58  LAYCAVEMMHAGASCYDFDRFRVIFRPSPRQSDCMIIVGTLTNKMGPAL 106


>gi|125557036|gb|EAZ02572.1| hypothetical protein OsI_24684 [Oryza sativa Indica Group]
 gi|125598924|gb|EAZ38500.1| hypothetical protein OsJ_22886 [Oryza sativa Japonica Group]
          Length = 135

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 31/49 (63%), Positives = 33/49 (67%)

Query: 62  LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASAL 110
           LA CAVEMM A    YD +RF    R SPRQSD MI+ GTLTNKM  AL
Sbjct: 58  LAYCAVEMMHAGASCYDFDRFRVIFRPSPRQSDCMIIVGTLTNKMGPAL 106


>gi|300951811|ref|ZP_07165624.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 116-1]
 gi|300448958|gb|EFK12578.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 116-1]
          Length = 116

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 40/74 (54%)

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           G   C +E+  A  P +D ERFG    +SPR +D+++  G +T  M     R Y+  P+ 
Sbjct: 43  GCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMRMPALRAYESAPDH 102

Query: 121 RYVISMGSCANGGG 134
           +  +S G+C  GGG
Sbjct: 103 KICVSYGACGVGGG 116


>gi|314924059|gb|EFS87890.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes
           HL001PA1]
 gi|314965030|gb|EFT09129.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes
           HL082PA2]
 gi|314983106|gb|EFT27198.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes
           HL110PA3]
 gi|315090649|gb|EFT62625.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes
           HL110PA4]
 gi|315093837|gb|EFT65813.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes
           HL060PA1]
 gi|315104055|gb|EFT76031.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes
           HL050PA2]
 gi|327326472|gb|EGE68261.1| NADH dehydrogenase subunit [Propionibacterium acnes HL103PA1]
          Length = 132

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/139 (32%), Positives = 69/139 (49%), Gaps = 17/139 (12%)

Query: 45  QLVTWARTGSLMWMTFGLACCAVE---MMQASMP-RYDLERFGFAPRASPRQSDVMIVAG 100
           + + W   GS+  +   LACC VE    + A+ P R ++      P  +P    V+ V+G
Sbjct: 2   KFIDWFADGSVYVVDLALACCGVESGAAVSANAPVREEI------PDGAPI---VVFVSG 52

Query: 101 TLTNKMASALRRVYDQMP--EPRYVISMGSCANGGGYYHYSYSVVRGC-DRIVPVDIYVP 157
           T+T  +A  +R    ++    P  V++ G+CA  GG Y  S  VV G  D  V  D ++P
Sbjct: 53  TVTTGLAPVVRDTVGELKRNHPVDVVAFGACACAGGPYWDSAGVVAGLPDAGVDADHWIP 112

Query: 158 GCPPTAEALIYGILLLQKK 176
           GCPP  E L  G+L   ++
Sbjct: 113 GCPPGPETLT-GLLASSRE 130


>gi|50843355|ref|YP_056582.1| NADH dehydrogenase subunit [Propionibacterium acnes KPA171202]
 gi|289424815|ref|ZP_06426597.1| NADH ubiquinone oxidoreductase, 20 Kd subunit [Propionibacterium
           acnes SK187]
 gi|289427723|ref|ZP_06429435.1| NADH ubiquinone oxidoreductase, 20 Kd subunit [Propionibacterium
           acnes J165]
 gi|295131426|ref|YP_003582089.1| NADH ubiquinone oxidoreductase, 20 Kd subunit [Propionibacterium
           acnes SK137]
 gi|50840957|gb|AAT83624.1| NADH dehydrogenase subunit [Propionibacterium acnes KPA171202]
 gi|289154778|gb|EFD03461.1| NADH ubiquinone oxidoreductase, 20 Kd subunit [Propionibacterium
           acnes SK187]
 gi|289159214|gb|EFD07406.1| NADH ubiquinone oxidoreductase, 20 Kd subunit [Propionibacterium
           acnes J165]
 gi|291376669|gb|ADE00524.1| NADH ubiquinone oxidoreductase, 20 Kd subunit [Propionibacterium
           acnes SK137]
 gi|313763090|gb|EFS34454.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes
           HL013PA1]
 gi|313773016|gb|EFS38982.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes
           HL074PA1]
 gi|313794097|gb|EFS42119.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes
           HL110PA1]
 gi|313802411|gb|EFS43636.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes
           HL110PA2]
 gi|313807856|gb|EFS46340.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes
           HL087PA2]
 gi|313812031|gb|EFS49745.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes
           HL083PA1]
 gi|313812142|gb|EFS49856.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes
           HL025PA1]
 gi|313816888|gb|EFS54602.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes
           HL059PA1]
 gi|313819192|gb|EFS56906.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes
           HL046PA2]
 gi|313819769|gb|EFS57483.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes
           HL036PA1]
 gi|313823886|gb|EFS61600.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes
           HL036PA2]
 gi|313827247|gb|EFS64961.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes
           HL063PA1]
 gi|313828423|gb|EFS66137.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes
           HL063PA2]
 gi|313831120|gb|EFS68834.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes
           HL007PA1]
 gi|313833477|gb|EFS71191.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes
           HL056PA1]
 gi|313838111|gb|EFS75825.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes
           HL086PA1]
 gi|314914551|gb|EFS78382.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes
           HL005PA4]
 gi|314919205|gb|EFS83036.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes
           HL050PA1]
 gi|314920639|gb|EFS84470.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes
           HL050PA3]
 gi|314925722|gb|EFS89553.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes
           HL036PA3]
 gi|314931451|gb|EFS95282.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes
           HL067PA1]
 gi|314957011|gb|EFT01117.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes
           HL027PA1]
 gi|314957825|gb|EFT01928.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes
           HL002PA1]
 gi|314960666|gb|EFT04767.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes
           HL002PA2]
 gi|314963378|gb|EFT07478.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes
           HL082PA1]
 gi|314969727|gb|EFT13825.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes
           HL037PA1]
 gi|314974302|gb|EFT18398.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes
           HL053PA1]
 gi|314976926|gb|EFT21021.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes
           HL045PA1]
 gi|314979886|gb|EFT23980.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes
           HL072PA2]
 gi|314985816|gb|EFT29908.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes
           HL005PA1]
 gi|314988401|gb|EFT32492.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes
           HL005PA2]
 gi|314988825|gb|EFT32916.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes
           HL005PA3]
 gi|315077114|gb|EFT49189.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes
           HL053PA2]
 gi|315084887|gb|EFT56863.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes
           HL027PA2]
 gi|315087244|gb|EFT59220.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes
           HL002PA3]
 gi|315088977|gb|EFT60953.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes
           HL072PA1]
 gi|315096825|gb|EFT68801.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes
           HL038PA1]
 gi|315100090|gb|EFT72066.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes
           HL059PA2]
 gi|315100586|gb|EFT72562.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes
           HL046PA1]
 gi|315106026|gb|EFT78002.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes
           HL030PA1]
 gi|315109357|gb|EFT81333.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes
           HL030PA2]
 gi|327325634|gb|EGE67432.1| NADH dehydrogenase subunit [Propionibacterium acnes HL096PA2]
 gi|327328228|gb|EGE69995.1| NADH dehydrogenase subunit [Propionibacterium acnes HL096PA3]
 gi|327445304|gb|EGE91958.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes
           HL043PA1]
 gi|327446944|gb|EGE93598.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes
           HL043PA2]
 gi|327449059|gb|EGE95713.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes
           HL013PA2]
 gi|327451405|gb|EGE98059.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes
           HL092PA1]
 gi|327452595|gb|EGE99249.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes
           HL087PA3]
 gi|327457638|gb|EGF04293.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes
           HL083PA2]
 gi|328751922|gb|EGF65538.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes
           HL087PA1]
 gi|328756933|gb|EGF70549.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes
           HL020PA1]
 gi|328759054|gb|EGF72670.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes
           HL025PA2]
 gi|328762245|gb|EGF75737.1| NADH dehydrogenase subunit [Propionibacterium acnes HL099PA1]
 gi|332676294|gb|AEE73110.1| NADH dehydrogenase subunit [Propionibacterium acnes 266]
          Length = 132

 Score = 58.9 bits (141), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 40/125 (32%), Positives = 60/125 (48%), Gaps = 8/125 (6%)

Query: 45  QLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTN 104
           + + W   GS+  +   LACC VE   A +    +      P  +P    V++V+GT+T 
Sbjct: 2   KFIDWFADGSVYVVDLALACCGVESGAAVLANAPVREE--IPDGAPI---VVLVSGTVTT 56

Query: 105 KMASALRRVYDQMP--EPRYVISMGSCANGGGYYHYSYSVVRGC-DRIVPVDIYVPGCPP 161
            +A  +     ++    P  V++ G+CA  GG Y  S  VV G  D  V  D ++PGCPP
Sbjct: 57  GLAPVVSDTVHELKRNHPVDVVAFGACACAGGPYWDSAGVVAGLPDAGVDADHWIPGCPP 116

Query: 162 TAEAL 166
             E L
Sbjct: 117 GPETL 121


>gi|282855245|ref|ZP_06264577.1| NADH ubiquinone oxidoreductase, 20 Kd subunit [Propionibacterium
           acnes J139]
 gi|282581833|gb|EFB87218.1| NADH ubiquinone oxidoreductase, 20 Kd subunit [Propionibacterium
           acnes J139]
          Length = 132

 Score = 58.5 bits (140), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 45/139 (32%), Positives = 69/139 (49%), Gaps = 17/139 (12%)

Query: 45  QLVTWARTGSLMWMTFGLACCAVE---MMQASMP-RYDLERFGFAPRASPRQSDVMIVAG 100
           + + W   GS+  +   LACC VE    + A+ P R ++      P  +P    V+ V+G
Sbjct: 2   KFIDWFADGSVYVVDLALACCGVESGAAVSANAPVREEI------PDGAPI---VVFVSG 52

Query: 101 TLTNKMASALRRVYDQMP--EPRYVISMGSCANGGGYYHYSYSVVRGC-DRIVPVDIYVP 157
           T+T  +A  +R    ++    P  V++ G+CA  GG Y  S  VV G  D  V  D ++P
Sbjct: 53  TVTTGLAPVVRDTVGELKRNHPVDVMAFGACACAGGPYWDSAGVVAGLPDAGVDADHWIP 112

Query: 158 GCPPTAEALIYGILLLQKK 176
           GCPP  E L  G+L   ++
Sbjct: 113 GCPPGPETLT-GLLASSRE 130


>gi|327333152|gb|EGE74879.1| NADH dehydrogenase subunit [Propionibacterium acnes HL097PA1]
          Length = 132

 Score = 57.8 bits (138), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 44/139 (31%), Positives = 69/139 (49%), Gaps = 17/139 (12%)

Query: 45  QLVTWARTGSLMWMTFGLACCAVE---MMQASMP-RYDLERFGFAPRASPRQSDVMIVAG 100
           + + W   GS+  +   LACC VE    + A+ P R ++      P  +P    V++V+G
Sbjct: 2   KFIDWFADGSVYVVDLALACCGVESGAAVSANAPVREEI------PDGAPI---VVLVSG 52

Query: 101 TLTNKMASALRRVYDQMP--EPRYVISMGSCANGGGYYHYSYSVVRGC-DRIVPVDIYVP 157
           T+T  +A  +     ++    P  V++ G+CA  GG Y  S  VV G  D  V  D ++P
Sbjct: 53  TVTTGLAPVVSDTVHELKRNHPVDVVAFGACACAGGPYWDSAGVVAGLPDAGVDADHWIP 112

Query: 158 GCPPTAEALIYGILLLQKK 176
           GCPP  E L  G+L   ++
Sbjct: 113 GCPPGPETLT-GLLASSRE 130


>gi|301107928|ref|XP_002903046.1| conserved hypothetical protein [Phytophthora infestans T30-4]
 gi|262098164|gb|EEY56216.1| conserved hypothetical protein [Phytophthora infestans T30-4]
          Length = 62

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 27/50 (54%), Positives = 35/50 (70%), Gaps = 3/50 (6%)

Query: 106 MASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
           MA  +R V+D MP+   V+ MGSCA+GGGYYHYSY+ V G +R V +  Y
Sbjct: 1   MALGMRSVHDLMPD---VVFMGSCADGGGYYHYSYAEVYGYNRFVLLGFY 47


>gi|224538212|ref|ZP_03678751.1| hypothetical protein BACCELL_03103 [Bacteroides cellulosilyticus
          DSM 14838]
 gi|224520144|gb|EEF89249.1| hypothetical protein BACCELL_03103 [Bacteroides cellulosilyticus
          DSM 14838]
          Length = 91

 Score = 54.3 bits (129), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 30/50 (60%), Gaps = 1/50 (2%)

Query: 43 VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPR 91
          +D  + W R+ SL  +TF  +CC +E M     RYD+ RFGF   RASPR
Sbjct: 42 LDDFINWGRSNSLWPLTFATSCCGIEFMALGAARYDMARFGFEVARASPR 91


>gi|183221787|ref|YP_001839783.1| hydrogenase-4 subunit G [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
 gi|189911861|ref|YP_001963416.1| metal (Ni/Fe) hydrogenase small subunit [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Ames)']
 gi|167776537|gb|ABZ94838.1| Metal (Ni/Fe) hydrogenase, small subunit [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Ames)']
 gi|167780209|gb|ABZ98507.1| Hydrogenase-4 subunit G [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
          Length = 273

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 52/97 (53%), Gaps = 7/97 (7%)

Query: 77  YDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY 136
           +D ER G    ASP+ +D ++ +G ++ +M   L+  +D + EPR +I+ G+ A  GG +
Sbjct: 164 FDSEREGIRCVASPKHADTIVFSGPISEQMEGPLQTAWDVLSEPRALIACGTEAVSGGLF 223

Query: 137 HYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLL 173
                  +G     P D+Y+ G PP  + ++ G  LL
Sbjct: 224 ------PKGKIPKEP-DLYISGDPPRPDVILQGFRLL 253


>gi|300951809|ref|ZP_07165623.1| conserved domain protein [Escherichia coli MS 116-1]
 gi|300448972|gb|EFK12592.1| conserved domain protein [Escherichia coli MS 116-1]
          Length = 136

 Score = 52.0 bits (123), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 25/49 (51%), Positives = 32/49 (65%), Gaps = 4/49 (8%)

Query: 136 YHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKKIRRV 180
           +H  YSV  G D IVP+D+++PGCPPT  A I+G      LLQ+KI  V
Sbjct: 2   FHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHGFAVALGLLQQKIHAV 50


>gi|332278363|ref|ZP_08390776.1| LOW QUALITY PROTEIN: hydrogenase 4 Fe-S subunit [Shigella sp. D9]
 gi|332100715|gb|EGJ04061.1| LOW QUALITY PROTEIN: hydrogenase 4 Fe-S subunit [Shigella sp. D9]
          Length = 149

 Score = 52.0 bits (123), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 25/49 (51%), Positives = 32/49 (65%), Gaps = 4/49 (8%)

Query: 136 YHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKKIRRV 180
           +H  YSV  G D IVP+D+++PGCPPT  A I+G      LLQ+KI  V
Sbjct: 15  FHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHGFAVALGLLQQKIHAV 63


>gi|19698434|gb|AAL93145.1| NADH-ubiquinone oxidoreductase [Lupinus luteus]
          Length = 92

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 22/33 (66%), Positives = 27/33 (81%)

Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMM 70
          F+++ VD L+ WAR GS+  MTFGLACCAVEMM
Sbjct: 60 FVISKVDDLMNWARRGSIWPMTFGLACCAVEMM 92


>gi|323159342|gb|EFZ45327.1| hydrogenase-4 component I [Escherichia coli E128010]
          Length = 142

 Score = 51.6 bits (122), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 25/49 (51%), Positives = 32/49 (65%), Gaps = 4/49 (8%)

Query: 136 YHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKKIRRV 180
           +H  YSV  G D IVP+D+++PGCPPT  A I+G      LLQ+KI  V
Sbjct: 8   FHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHGFAVALGLLQQKIHAV 56


>gi|300820846|ref|ZP_07100996.1| conserved domain protein [Escherichia coli MS 119-7]
 gi|300526599|gb|EFK47668.1| conserved domain protein [Escherichia coli MS 119-7]
          Length = 142

 Score = 51.6 bits (122), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 25/49 (51%), Positives = 32/49 (65%), Gaps = 4/49 (8%)

Query: 136 YHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKKIRRV 180
           +H  YSV  G D IVP+D+++PGCPPT  A I+G      LLQ+KI  V
Sbjct: 8   FHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHGFAVALGLLQQKIHAV 56


>gi|19698436|gb|AAL93146.1| NADH-ubiquinone oxidoreductase [Lupinus luteus]
          Length = 94

 Score = 51.2 bits (121), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 22/33 (66%), Positives = 27/33 (81%)

Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMM 70
          F+++ VD L+ WAR GS+  MTFGLACCAVEMM
Sbjct: 62 FVISKVDDLMNWARRGSIWPMTFGLACCAVEMM 94


>gi|303254845|ref|ZP_07340933.1| formate hydrogenlyase, subunit G [Streptococcus pneumoniae BS455]
 gi|302598192|gb|EFL65250.1| formate hydrogenlyase, subunit G [Streptococcus pneumoniae BS455]
          Length = 106

 Score = 50.4 bits (119), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 32/61 (52%)

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           G   C +E+     P +D ERFG    ASPR +D+++  G +T  M +   R Y   P+P
Sbjct: 46  GCNGCEIEIFSTITPTFDAERFGIKVVASPRHADILLFTGAVTRAMRTPAMRAYQAAPDP 105

Query: 121 R 121
           +
Sbjct: 106 K 106


>gi|207094125|ref|ZP_03241912.1| NADH dehydrogenase subunit B [Helicobacter pylori HPKX_438_AG0C1]
          Length = 35

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 20/35 (57%), Positives = 28/35 (80%)

Query: 140 YSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQ 174
           Y+ V+G DR+VPVDIY+PGC P +E L Y +++LQ
Sbjct: 1   YATVQGADRVVPVDIYLPGCAPRSETLQYALMVLQ 35


>gi|333001061|gb|EGK20631.1| formate hydrogenlyase subunit 7 [Shigella flexneri K-272]
          Length = 128

 Score = 48.5 bits (114), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 22/41 (53%), Positives = 28/41 (68%), Gaps = 4/41 (9%)

Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKKIRRVG 181
           G D+IVPVD+Y+PGCPPT  A +YG      LL++KI   G
Sbjct: 4   GTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARG 44


>gi|303245121|ref|ZP_07331437.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanothermococcus
           okinawensis IH1]
 gi|302484504|gb|EFL47452.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanothermococcus
           okinawensis IH1]
          Length = 160

 Score = 48.1 bits (113), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 23/95 (24%), Positives = 47/95 (49%), Gaps = 9/95 (9%)

Query: 87  RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS------- 139
           R  P   D+ +V G +      +++ + +   + + V+++G+CA  GG   YS       
Sbjct: 59  RKIPDNIDIALVEGAVCLDDEHSIKDILETRKKAKIVVALGACAATGGVLRYSRGGQMSK 118

Query: 140 --YSVVRGCDRIVPVDIYVPGCPPTAEALIYGILL 172
             ++       ++ VD+ +PGCPP+ E ++  I+L
Sbjct: 119 PAHASYVAVGDVIKVDLAIPGCPPSPETIVKVIIL 153


>gi|84490092|ref|YP_448324.1| FrhG [Methanosphaera stadtmanae DSM 3091]
 gi|84373411|gb|ABC57681.1| FrhG [Methanosphaera stadtmanae DSM 3091]
          Length = 256

 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 50/90 (55%), Gaps = 10/90 (11%)

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS---------YSV 142
           + D++++ G++  +   +L+ + +   + + ++++GSCA  GG+  Y+         +S 
Sbjct: 76  EMDLVLIEGSVCLEDKHSLKELKEARSKSKLLVALGSCAATGGFTVYAKGGQQAQPQHSS 135

Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILL 172
                 IV VD+ VPGCPP+ + +I  ILL
Sbjct: 136 FLALQNIVKVDLAVPGCPPSPD-IIKKILL 164


>gi|332295900|ref|YP_004437823.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Thermodesulfobium
           narugense DSM 14796]
 gi|332179003|gb|AEE14692.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Thermodesulfobium
           narugense DSM 14796]
          Length = 155

 Score = 46.6 bits (109), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 39/82 (47%)

Query: 64  CCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYV 123
               E+     P+Y+L R G     +PR++D++IV G  T KM   +    +QMPEP  V
Sbjct: 49  ALNFEIFALLSPKYNLHRLGIFFTQTPREADLLIVLGRPTEKMVPLMLEAINQMPEPFGV 108

Query: 124 ISMGSCANGGGYYHYSYSVVRG 145
           +   +   G  + ++    V G
Sbjct: 109 LLTENNDLGLSFDNFDIPNVIG 130


>gi|73669778|ref|YP_305793.1| coenzyme F420-reducing hydrogenase subunit gamma [Methanosarcina
           barkeri str. Fusaro]
 gi|72396940|gb|AAZ71213.1| coenzyme F420-reducing hydrogenase, gamma subunit [Methanosarcina
           barkeri str. Fusaro]
          Length = 274

 Score = 45.8 bits (107), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 26/96 (27%), Positives = 49/96 (51%), Gaps = 13/96 (13%)

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCAN---------GGGYYHYSYSV 142
           + DV +V G++  +   ++  + +   + R V+++GSCA+         GG + H  +  
Sbjct: 68  EMDVALVEGSVCIQDRESVEDIKETRKKSRIVVALGSCASYGNITRFCRGGQHNHPQHES 127

Query: 143 VRGCDRIVPVDIYVPGCPPTAEAL----IYGILLLQ 174
                 ++ VD+Y+PGCPP+ E +    I   LLL+
Sbjct: 128 YLPIGDLIDVDVYIPGCPPSPELIRNVAIMAYLLLE 163


>gi|2463276|emb|CAA74096.1| F420-reducing hydrogenase isoenzyme I gamma subunit [Methanosarcina
           barkeri]
          Length = 259

 Score = 45.4 bits (106), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 26/96 (27%), Positives = 49/96 (51%), Gaps = 13/96 (13%)

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCAN---------GGGYYHYSYSV 142
           + DV +V G++  +   ++  + +   + R V+++GSCA+         GG + H  +  
Sbjct: 53  EMDVALVEGSVCIQDRESVEDIKETRKKSRIVVALGSCASYGNITRFCRGGQHNHPQHES 112

Query: 143 VRGCDRIVPVDIYVPGCPPTAEAL----IYGILLLQ 174
                 ++ VD+Y+PGCPP+ E +    I   LLL+
Sbjct: 113 YLPIGDLIDVDVYIPGCPPSPELIRNVAIMAYLLLE 148


>gi|327399463|ref|YP_004340332.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Hippea maritima DSM
           10411]
 gi|327182092|gb|AEA34273.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Hippea maritima DSM
           10411]
          Length = 153

 Score = 45.4 bits (106), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 32/54 (59%)

Query: 67  VEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           +E+     P+Y++ RFG     SPR +D+++V G  + KM   L+   +QMP+P
Sbjct: 50  LEIAALQTPQYNIHRFGIFFCDSPRHADLLLVLGKCSIKMIEPLKETVNQMPQP 103


>gi|150398834|ref|YP_001322601.1| coenzyme F420 hydrogenase [Methanococcus vannielii SB]
 gi|150011537|gb|ABR53989.1| Coenzyme F420 hydrogenase [Methanococcus vannielii SB]
          Length = 242

 Score = 45.4 bits (106), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 23/94 (24%), Positives = 45/94 (47%), Gaps = 9/94 (9%)

Query: 87  RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-------- 138
           R  P   D+ +V G++      +L  +       + V+++G+CA  GG   +        
Sbjct: 59  RKIPENIDIALVEGSVCLDDHHSLDDILTTRKNSKIVVALGACAASGGVTRFARGGQMSQ 118

Query: 139 -SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171
            S+S       ++ VD+ +PGCPP+ E+++  I+
Sbjct: 119 PSHSAFVPIGDVIKVDLALPGCPPSTESIVNLIM 152


>gi|330993943|ref|ZP_08317873.1| Formate hydrogenlyase subunit 7 [Gluconacetobacter sp. SXCC-1]
 gi|329758889|gb|EGG75403.1| Formate hydrogenlyase subunit 7 [Gluconacetobacter sp. SXCC-1]
          Length = 166

 Score = 45.1 bits (105), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 49/85 (57%), Gaps = 1/85 (1%)

Query: 88  ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCD 147
           ++PRQ+ ++++ G+L+ +MA  +   +  MP  R +  +G CA  GG +  SY+V+ G  
Sbjct: 70  STPRQAGLLLLTGSLSVEMAPVVELAWQAMPGSRLLAVVGDCAVDGGVFTPSYAVLGGVG 129

Query: 148 RIVPVDIYVPGCPPTAEALIYGILL 172
                 + +PGCPP A A+I   L+
Sbjct: 130 GRAQASLSLPGCPP-APAMILEALI 153


>gi|261403395|ref|YP_003247619.1| coenzyme F420 hydrogenase, subunit gamma [Methanocaldococcus
           vulcanius M7]
 gi|261370388|gb|ACX73137.1| coenzyme F420 hydrogenase, subunit gamma [Methanocaldococcus
           vulcanius M7]
          Length = 227

 Score = 44.3 bits (103), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 22/85 (25%), Positives = 43/85 (50%), Gaps = 9/85 (10%)

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS---------YSV 142
           + D+ +V G++      +L    +   + + V+++G+CA  GG   YS         +S 
Sbjct: 49  ECDIALVEGSVCLDDHHSLEVAQEVRKKAKIVVALGACAATGGVTRYSKGNQLSKPVHSS 108

Query: 143 VRGCDRIVPVDIYVPGCPPTAEALI 167
                 ++ VD+ +PGCPP+ EA++
Sbjct: 109 FSPLTEVIKVDLAIPGCPPSPEAIV 133


>gi|45358381|ref|NP_987938.1| coenzyme F420-reducing hydrogenase subunit gamma [Methanococcus
           maripaludis S2]
 gi|44921139|emb|CAF30374.1| coenzyme F420-reducing hydrogenase subunit gamma [Methanococcus
           maripaludis S2]
          Length = 242

 Score = 43.9 bits (102), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 22/94 (23%), Positives = 45/94 (47%), Gaps = 9/94 (9%)

Query: 87  RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-------- 138
           R  P   D+ +V G++      ++  +       + V+++G+CA  GG   +        
Sbjct: 59  RKIPENIDIALVEGSVCLDDHHSVEDILTTRKNSKIVVALGACAASGGVTRFGRGGQMSQ 118

Query: 139 -SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171
            S+S       ++ VD+ +PGCPP+ E+++  I+
Sbjct: 119 PSHSSFVPIGDVIKVDLALPGCPPSTESIVNLIM 152


>gi|284990228|ref|YP_003408782.1| hypothetical protein Gobs_1697 [Geodermatophilus obscurus DSM
           43160]
 gi|284063473|gb|ADB74411.1| hypothetical protein Gobs_1697 [Geodermatophilus obscurus DSM
           43160]
          Length = 586

 Score = 43.9 bits (102), Expect = 0.011,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 36/54 (66%)

Query: 78  DLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCAN 131
           +L+R G+   ++P ++D+++V GT    +A A+  V+ Q+PEPR+   +GS A+
Sbjct: 35  ELDRRGWGHASAPAETDLLLVLGTPGEDLARAIDVVWSQVPEPRHRSGVGSGAH 88


>gi|297619116|ref|YP_003707221.1| coenzyme F420 hydrogenase subunit gamma [Methanococcus voltae A3]
 gi|297378093|gb|ADI36248.1| coenzyme F420 hydrogenase, subunit gamma [Methanococcus voltae A3]
          Length = 242

 Score = 43.5 bits (101), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 21/90 (23%), Positives = 43/90 (47%), Gaps = 9/90 (10%)

Query: 87  RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-------- 138
           R  P   D+ +V G++      A+  +       + V+++G+CA  GG   +        
Sbjct: 59  RKIPENIDIALVEGSVCLDDHHAMDDILTTRKNSKIVVALGACAASGGVTRFARGGQMSQ 118

Query: 139 -SYSVVRGCDRIVPVDIYVPGCPPTAEALI 167
            S++       ++ VD+ +PGCPP+ E+++
Sbjct: 119 PSHASFAPIGDVIKVDLALPGCPPSPESIV 148


>gi|29565659|ref|NP_817241.1| NADH dehydrogenase subunit K [Pinus koraiensis]
 gi|29469758|gb|AAO74086.1| ORF82a [Pinus koraiensis]
          Length = 82

 Score = 42.7 bits (99), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 6/51 (11%)

Query: 132 GGGYYHY------SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKK 176
           G  YYH       SYS V   D+++PVD+Y P CP   E +I  I  L+++
Sbjct: 25  GSMYYHIEMFGTDSYSTVHEVDKLIPVDVYSPDCPTEPEVIIDAITKLRER 75


>gi|307352753|ref|YP_003893804.1| coenzyme F420 hydrogenase subunit gamma [Methanoplanus petrolearius
           DSM 11571]
 gi|307155986|gb|ADN35366.1| coenzyme F420 hydrogenase, subunit gamma [Methanoplanus
           petrolearius DSM 11571]
          Length = 314

 Score = 42.7 bits (99), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 25/96 (26%), Positives = 47/96 (48%), Gaps = 13/96 (13%)

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCA---------NGGGYYHYSYSV 142
           + DV +V G++  +   ++R + +   + + V+++G CA          GG +    +  
Sbjct: 110 EMDVALVEGSVCLQDECSVREIKETREKAKVVVALGGCAAYGNITRFCRGGQWNQPQHES 169

Query: 143 VRGCDRIVPVDIYVPGCPPTAEAL----IYGILLLQ 174
                 ++ VD+Y+P CPP AEA+    +   LLLQ
Sbjct: 170 FVPIGDLIDVDVYLPSCPPGAEAIRNVCVMAYLLLQ 205


>gi|256811180|ref|YP_003128549.1| coenzyme F420 hydrogenase, subunit gamma [Methanocaldococcus
           fervens AG86]
 gi|256794380|gb|ACV25049.1| coenzyme F420 hydrogenase, subunit gamma [Methanocaldococcus
           fervens AG86]
          Length = 227

 Score = 42.7 bits (99), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 21/85 (24%), Positives = 42/85 (49%), Gaps = 9/85 (10%)

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS---------YSV 142
           + D+ +V G++      +L    +   + + V+++G+CA  GG   Y          +S 
Sbjct: 49  ECDIALVEGSVCLDDHHSLEVAEEVRKKAKIVVALGACAATGGVTRYCKGNQMSKPVHSS 108

Query: 143 VRGCDRIVPVDIYVPGCPPTAEALI 167
                 ++ VD+ +PGCPP+ EA++
Sbjct: 109 FSPLTEVIKVDLAIPGCPPSPEAIV 133


>gi|149377240|ref|ZP_01894987.1| NADH dehydrogenase subunit B [Marinobacter algicola DG893]
 gi|149358428|gb|EDM46903.1| NADH dehydrogenase subunit B [Marinobacter algicola DG893]
          Length = 81

 Score = 42.7 bits (99), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 25/47 (53%)

Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFG 83
          G L   ++  V W R  SL    FGL+CC VEM  A    +D+ RFG
Sbjct: 35 GKLSDVLNSAVNWGRKNSLWPYNFGLSCCYVEMTTAFTAPHDIARFG 81


>gi|15668201|ref|NP_246994.1| coenzyme F420-reducing hydrogenase subunit gamma
           [Methanocaldococcus jannaschii DSM 2661]
 gi|2494431|sp|Q60340|FRHG_METJA RecName: Full=Coenzyme F420 hydrogenase subunit gamma; AltName:
           Full=8-hydroxy-5-deazaflavin-reducing hydrogenase
           subunit gamma; Short=FRH
 gi|1590833|gb|AAB98010.1| coenzyme F420-reducing hydrogenase, gamma subunit
           [Methanocaldococcus jannaschii DSM 2661]
          Length = 230

 Score = 42.4 bits (98), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 21/85 (24%), Positives = 42/85 (49%), Gaps = 9/85 (10%)

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS---------YSV 142
           + D+ +V G++      +L    +   + + V+++G+CA  GG   Y          +S 
Sbjct: 52  ECDIALVEGSVCLDDHHSLEVAQEVRKKAKIVVALGACAATGGVTRYCKGNQLSKPVHSS 111

Query: 143 VRGCDRIVPVDIYVPGCPPTAEALI 167
                 ++ VD+ +PGCPP+ EA++
Sbjct: 112 FSPLTEVIKVDLAIPGCPPSPEAIV 136


>gi|20089854|ref|NP_615929.1| coenzyme F420 hydrogenase, subunit gamma [Methanosarcina
           acetivorans C2A]
 gi|19914803|gb|AAM04409.1| coenzyme F420 hydrogenase, subunit gamma [Methanosarcina
           acetivorans C2A]
          Length = 262

 Score = 42.4 bits (98), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 21/84 (25%), Positives = 42/84 (50%), Gaps = 9/84 (10%)

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCAN---------GGGYYHYSYSV 142
           + DV +V G++  +   ++  + +   + R V+++GSCA          GG +    +  
Sbjct: 62  EMDVALVEGSVCIQDRESVEDIKETRKKSRIVVALGSCATYGNITRFCRGGQHNQPQHES 121

Query: 143 VRGCDRIVPVDIYVPGCPPTAEAL 166
                 ++ VD+Y+PGCPP+ E +
Sbjct: 122 FLPIGDLIDVDVYIPGCPPSPELI 145


>gi|21229145|ref|NP_635067.1| coenzyme F420 hydrogenase subunit gamma [Methanosarcina mazei Go1]
 gi|20907707|gb|AAM32739.1| Coenzyme F420 hydrogenase, gamma subunit [Methanosarcina mazei Go1]
          Length = 287

 Score = 42.4 bits (98), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 20/84 (23%), Positives = 42/84 (50%), Gaps = 9/84 (10%)

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCA---------NGGGYYHYSYSV 142
           + DV +V G++  +   ++  + +   + + V+++GSCA          GG +    +  
Sbjct: 87  EMDVALVEGSVCIQDHESVEEIRETREKAKIVVALGSCACYGNITRFSRGGQHNQPQHES 146

Query: 143 VRGCDRIVPVDIYVPGCPPTAEAL 166
                 ++ VD+Y+PGCPP+ E +
Sbjct: 147 FLPIGDLIDVDVYIPGCPPSPELI 170


>gi|289192424|ref|YP_003458365.1| coenzyme F420 hydrogenase, subunit gamma [Methanocaldococcus sp.
           FS406-22]
 gi|288938874|gb|ADC69629.1| coenzyme F420 hydrogenase, subunit gamma [Methanocaldococcus sp.
           FS406-22]
          Length = 227

 Score = 42.4 bits (98), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 21/85 (24%), Positives = 42/85 (49%), Gaps = 9/85 (10%)

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS---------YSV 142
           + D+ +V G++      +L    +   + + V+++G+CA  GG   Y          +S 
Sbjct: 49  ECDIALVEGSVCLDDHHSLEVAQEVRKKAKIVVALGACAATGGVTRYCKGNQLSKPVHSS 108

Query: 143 VRGCDRIVPVDIYVPGCPPTAEALI 167
                 ++ VD+ +PGCPP+ EA++
Sbjct: 109 FSPLTEVIKVDLAIPGCPPSPEAIV 133


>gi|134045239|ref|YP_001096725.1| coenzyme F420-reducing hydrogenase subunit gamma [Methanococcus
           maripaludis C5]
 gi|132662864|gb|ABO34510.1| coenzyme F420-reducing hydrogenase, gamma subunit [Methanococcus
           maripaludis C5]
          Length = 228

 Score = 42.0 bits (97), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 20/94 (21%), Positives = 44/94 (46%), Gaps = 9/94 (9%)

Query: 87  RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS------- 139
           R  P   D++++ G++      A+    D   + + ++++G+CA  G    +S       
Sbjct: 45  REVPDDVDIILLEGSVCLSDHHAMEVALDSRKKAKILVALGACAATGNVTRFSKGNQPSK 104

Query: 140 --YSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171
             +        +V  D+ +PGCPP+ E+++  +L
Sbjct: 105 PVHDAFAPLTEVVKCDLAIPGCPPSPESIVAVVL 138


>gi|150402553|ref|YP_001329847.1| coenzyme F420 hydrogenase [Methanococcus maripaludis C7]
 gi|159905672|ref|YP_001549334.1| coenzyme F420 hydrogenase subunit gamma [Methanococcus maripaludis
           C6]
 gi|150033583|gb|ABR65696.1| Coenzyme F420 hydrogenase [Methanococcus maripaludis C7]
 gi|159887165|gb|ABX02102.1| coenzyme F420 hydrogenase, subunit gamma [Methanococcus maripaludis
           C6]
          Length = 228

 Score = 42.0 bits (97), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 20/94 (21%), Positives = 44/94 (46%), Gaps = 9/94 (9%)

Query: 87  RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS------- 139
           R  P   D++++ G++      A+    D   + + ++++G+CA  G    +S       
Sbjct: 45  REVPDDVDIILLEGSVCLSDHHAMEVALDSRKKAKILVALGACAATGNVTRFSKGNQPSK 104

Query: 140 --YSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171
             +        +V  D+ +PGCPP+ E+++  +L
Sbjct: 105 PVHDAFAPLTEVVKCDLAIPGCPPSPESIVAVVL 138


>gi|134045688|ref|YP_001097174.1| coenzyme F420-reducing hydrogenase subunit gamma [Methanococcus
           maripaludis C5]
 gi|132663313|gb|ABO34959.1| coenzyme F420-reducing hydrogenase, gamma subunit [Methanococcus
           maripaludis C5]
          Length = 242

 Score = 42.0 bits (97), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 21/94 (22%), Positives = 45/94 (47%), Gaps = 9/94 (9%)

Query: 87  RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-------- 138
           R  P   D+ +V G++      ++  +       + V+++G+CA  GG   +        
Sbjct: 59  RKIPEDIDIALVEGSVCLDDHHSVEDILTTRKNSKIVVALGACAASGGVTRFGRGNQMPQ 118

Query: 139 -SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171
            S++       ++ VD+ +PGCPP+ E+++  I+
Sbjct: 119 PSHASFVPIGDVIKVDLALPGCPPSPESIVNLIM 152


>gi|240102125|ref|YP_002958433.1| Coenzyme F420 hydrogenase subunit gamma (frhG) [Thermococcus
           gammatolerans EJ3]
 gi|239909678|gb|ACS32569.1| Coenzyme F420 hydrogenase subunit gamma (frhG) [Thermococcus
           gammatolerans EJ3]
          Length = 229

 Score = 42.0 bits (97), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 9/84 (10%)

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS---------YSV 142
           + DV ++ G         L  + +   + R V++ GSCA+ GG   ++         +  
Sbjct: 51  EYDVALITGGACMNEPRILEELKEIREKARVVVAFGSCASLGGILRFARGGQEPRPDHRN 110

Query: 143 VRGCDRIVPVDIYVPGCPPTAEAL 166
            +  + ++PVD  +PGCPPT + L
Sbjct: 111 FQPINSVIPVDYSIPGCPPTPQML 134


>gi|315079804|gb|EFT51780.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes
           HL078PA1]
          Length = 132

 Score = 41.6 bits (96), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 40/125 (32%), Positives = 59/125 (47%), Gaps = 8/125 (6%)

Query: 45  QLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTN 104
           + + W   GS+  +   LACC VE   A +    +      P  +P    V++V+GT+T 
Sbjct: 2   KFIDWFADGSVYVVDLALACCGVESGAAVLANAPVREE--IPDGAPI---VVLVSGTVTT 56

Query: 105 KMASALRRVYDQMP--EPRYVISMGSCANGGGYYHYSYSVVRGC-DRIVPVDIYVPGCPP 161
            +A  +     ++    P  V + G+CA  GG Y  S  VV G  D  V  D ++PGCPP
Sbjct: 57  GLAPVVSDTVHELKRNHPVDVAAFGACACAGGPYWDSAGVVAGLPDAGVDADHWIPGCPP 116

Query: 162 TAEAL 166
             E L
Sbjct: 117 GPETL 121


>gi|1396038|dbj|BAA07792.1| ndhK [Anthoceros formosae]
          Length = 80

 Score = 41.6 bits (96), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 17/57 (29%), Positives = 29/57 (50%)

Query: 27 SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFG 83
          S +  E T    ++T+ +    WAR  SL  + +G +CC +E       R+D +R+G
Sbjct: 24 SSLPDETTSDSTILTTFNDFSNWARLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYG 80


>gi|300903499|ref|ZP_07121424.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 84-1]
 gi|301302841|ref|ZP_07208969.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 124-1]
 gi|300404531|gb|EFJ88069.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 84-1]
 gi|300841776|gb|EFK69536.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 124-1]
 gi|315256505|gb|EFU36473.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 85-1]
          Length = 133

 Score = 41.6 bits (96), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 17/46 (36%), Positives = 26/46 (56%)

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKM 106
           G   C +E+  A  P +D ERFG    +SPR +D+++  G +T  M
Sbjct: 43  GCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAM 88


>gi|116624101|ref|YP_826257.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Candidatus
           Solibacter usitatus Ellin6076]
 gi|116227263|gb|ABJ85972.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Candidatus
           Solibacter usitatus Ellin6076]
          Length = 176

 Score = 41.6 bits (96), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 30/113 (26%), Positives = 48/113 (42%), Gaps = 34/113 (30%)

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY----YHYSYSVV-- 143
           P   DV +V G ++++    LRR+       + ++S+G CA  G        +  S V  
Sbjct: 51  PENVDVTLVEGAISSE--EDLRRIRLVRSRTKILVSLGDCAVNGNVPAMRNQFGASAVLK 108

Query: 144 -------------------------RGCDRIVPVDIYVPGCPPTAEALIYGIL 171
                                    R    +VPVD++VPGCPP+A+ LI+ +L
Sbjct: 109 RAYLENGTLDAQIPRQVIPTLLPLTRPVHELVPVDLFVPGCPPSAD-LIFSVL 160


>gi|150401467|ref|YP_001325233.1| coenzyme F420 hydrogenase [Methanococcus aeolicus Nankai-3]
 gi|150014170|gb|ABR56621.1| Coenzyme F420 hydrogenase [Methanococcus aeolicus Nankai-3]
          Length = 227

 Score = 41.2 bits (95), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 23/92 (25%), Positives = 47/92 (51%), Gaps = 16/92 (17%)

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY------------YHYS 139
           ++D+++V G++      A+    D   + + ++++G+CA  GG              H S
Sbjct: 49  EADIILVEGSVCLDDHHAMEIAQDVGKKAKILVALGACAATGGITRFCRGGQMSKPIHSS 108

Query: 140 YSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171
           +S +     +V  D+ +PGCPP+ E +I G++
Sbjct: 109 FSPIT---EVVKCDLAIPGCPPSPE-IIVGLI 136


>gi|73667997|ref|YP_304012.1| coenzyme F420-reducing hydrogenase subunit gamma [Methanosarcina
           barkeri str. Fusaro]
 gi|72395159|gb|AAZ69432.1| coenzyme F420-reducing hydrogenase, gamma subunit [Methanosarcina
           barkeri str. Fusaro]
          Length = 293

 Score = 41.2 bits (95), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 20/84 (23%), Positives = 42/84 (50%), Gaps = 9/84 (10%)

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCA---------NGGGYYHYSYSV 142
           + DV +V G++  +   ++  + +   + + V+++GSCA          GG +    +  
Sbjct: 87  EMDVALVEGSVCLQDHESVEDIKETRKKSKIVVALGSCACYGNITRFSRGGQHNQPQHES 146

Query: 143 VRGCDRIVPVDIYVPGCPPTAEAL 166
                 ++ VD+Y+PGCPP+ E +
Sbjct: 147 YLPIGDLIDVDVYIPGCPPSPELI 170


>gi|296109198|ref|YP_003616147.1| hypothetical protein Metin_0513 [Methanocaldococcus infernus ME]
 gi|295434012|gb|ADG13183.1| hypothetical protein Metin_0513 [Methanocaldococcus infernus ME]
          Length = 226

 Score = 41.2 bits (95), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 24/88 (27%), Positives = 44/88 (50%), Gaps = 15/88 (17%)

Query: 91  RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY------------ 138
           ++ DV +V G++  +   AL    +   + + V+++G+CA  GG   Y            
Sbjct: 48  KECDVALVEGSVCLEDHHALEVAKEVREKAKIVVALGACAAFGGLTRYCKGNQLPKPVNS 107

Query: 139 SYSVVRGCDRIVPVDIYVPGCPPTAEAL 166
           S+S +     ++ VD  +PGCPP+ EA+
Sbjct: 108 SFSPLT---EVIKVDYSIPGCPPSPEAI 132


>gi|85682156|sp|P80491|FRHG_METBF RecName: Full=Coenzyme F420 hydrogenase subunit gamma; AltName:
           Full=8-hydroxy-5-deazaflavin-reducing hydrogenase
           subunit gamma; Short=FRH
 gi|2463281|emb|CAA74092.1| F420-reducing hydrogenase isoenzyme II gamma subunit
           [Methanosarcina barkeri]
          Length = 259

 Score = 40.8 bits (94), Expect = 0.094,   Method: Compositional matrix adjust.
 Identities = 20/84 (23%), Positives = 42/84 (50%), Gaps = 9/84 (10%)

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCA---------NGGGYYHYSYSV 142
           + DV +V G++  +   ++  + +   + + V+++GSCA          GG +    +  
Sbjct: 53  EMDVALVEGSVCLQDHESVEDIKETRKKSKIVVALGSCACYGNITRFSRGGQHNQPQHES 112

Query: 143 VRGCDRIVPVDIYVPGCPPTAEAL 166
                 ++ VD+Y+PGCPP+ E +
Sbjct: 113 YLPIGDLIDVDVYIPGCPPSPELI 136


>gi|20093976|ref|NP_613823.1| coenzyme F420-reducing hydrogenase, gamma subunit [Methanopyrus
           kandleri AV19]
 gi|19886938|gb|AAM01753.1| Coenzyme F420-reducing hydrogenase, gamma subunit [Methanopyrus
           kandleri AV19]
          Length = 238

 Score = 40.4 bits (93), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 24/97 (24%), Positives = 44/97 (45%), Gaps = 15/97 (15%)

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY------------YHYS 139
            +D++ V G +    A  L ++ +       V+S+GSCA  GG+            YH++
Sbjct: 42  DADILFVEGAVDFADAETLEKLEEAASAVSTVVSLGSCAATGGFERHVIGMRDPDRYHFT 101

Query: 140 YSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKK 176
              V    + V  D  + GCPPT + +   +  L+++
Sbjct: 102 ---VFPAAKFVETDYAINGCPPTTDVIASFLRALEEE 135


>gi|213028132|ref|ZP_03342579.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
           enterica serovar Typhi str. 404ty]
          Length = 102

 Score = 40.4 bits (93), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 17/50 (34%), Positives = 26/50 (52%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVY 114
           C +E+     P +D ERFG     SPR +D+++  G +T  M S   R +
Sbjct: 51  CEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAW 100


>gi|156742696|ref|YP_001432825.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Roseiflexus
           castenholzii DSM 13941]
 gi|156234024|gb|ABU58807.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Roseiflexus
           castenholzii DSM 13941]
          Length = 125

 Score = 40.4 bits (93), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 30/107 (28%), Positives = 51/107 (47%), Gaps = 10/107 (9%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +EM+ A     D+     A   SP ++DV+++ G LT+   +AL  +  ++     ++
Sbjct: 19  CDLEMIAAISETADI-----AWATSPHEADVLLITGPLTHSAKTALVALMQELAHQPPLL 73

Query: 125 SMGSCA-NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGI 170
           ++G CA +G  +     + V G    V VD    GCPP    +I  I
Sbjct: 74  AIGRCAIDGHPFGRGGLTSVAGLTMQVSVD----GCPPEHARIIESI 116


>gi|116326949|ref|YP_796669.1| metal (Ni/Fe) hydrogenase, small subunit [Leptospira borgpetersenii
           serovar Hardjo-bovis L550]
 gi|116332385|ref|YP_802103.1| metal (Ni/Fe) hydrogenase, small subunit [Leptospira borgpetersenii
           serovar Hardjo-bovis JB197]
 gi|116119693|gb|ABJ77736.1| Metal (Ni/Fe) hydrogenase, small subunit [Leptospira borgpetersenii
           serovar Hardjo-bovis L550]
 gi|116126074|gb|ABJ77345.1| Metal (Ni/Fe) hydrogenase, small subunit [Leptospira borgpetersenii
           serovar Hardjo-bovis JB197]
          Length = 273

 Score = 40.4 bits (93), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 21/86 (24%), Positives = 39/86 (45%), Gaps = 7/86 (8%)

Query: 88  ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCD 147
           ASP+ +D ++ +G +   M   L   ++ MP P+ +++ GS A  GG +           
Sbjct: 172 ASPKHADALVYSGPVGPNMEEPLNTAWETMPSPKALVACGSEAVSGGLFKLGKLPKEP-- 229

Query: 148 RIVPVDIYVPGCPPTAEALIYGILLL 173
                D+++ G PP  + +I     L
Sbjct: 230 -----DLFIGGDPPRPDVIISAFRYL 250


>gi|302882588|ref|XP_003040202.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256721074|gb|EEU34489.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 49

 Score = 40.0 bits (92), Expect = 0.14,   Method: Composition-based stats.
 Identities = 27/49 (55%), Positives = 38/49 (77%)

Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171
           +IS+GS  N GGYY+YSYS++RG ++I+PVDIY+   P  ++ALIY I 
Sbjct: 1   IISIGSYINSGGYYYYSYSIIRGYNKIIPVDIYILSYPLISKALIYSIF 49


>gi|312137254|ref|YP_004004591.1| coenzyme f420-reducing hydrogenase, gamma subunit [Methanothermus
           fervidus DSM 2088]
 gi|311224973|gb|ADP77829.1| coenzyme F420-reducing hydrogenase, gamma subunit [Methanothermus
           fervidus DSM 2088]
          Length = 254

 Score = 39.7 bits (91), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 20/84 (23%), Positives = 41/84 (48%), Gaps = 9/84 (10%)

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY---------SYSV 142
           + D+ +V G++  +   ++  + +   +   + ++GSCA  GG+  Y         S+  
Sbjct: 74  EMDLALVEGSVCIQDEHSVEELMEAREKADLLCALGSCAMTGGFTRYARGGQQAQPSHES 133

Query: 143 VRGCDRIVPVDIYVPGCPPTAEAL 166
                 +V VD+ +PGCPP+ E +
Sbjct: 134 FLPISELVKVDLAIPGCPPSPEII 157


>gi|150399445|ref|YP_001323212.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanococcus
           vannielii SB]
 gi|150012148|gb|ABR54600.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanococcus
           vannielii SB]
          Length = 228

 Score = 39.7 bits (91), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 20/90 (22%), Positives = 43/90 (47%), Gaps = 15/90 (16%)

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY------------YH 137
           P   D++++ G++      AL    +   + + ++++G+CA  G               H
Sbjct: 48  PDNVDIILLEGSVCLSDHHALEVALESRKKAKILVALGACAASGNITRFCKGNQMSKPIH 107

Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALI 167
            S++ +     +V  D+ +PGCPP+ EA++
Sbjct: 108 DSFAPLT---EVVKCDLAIPGCPPSPEAIV 134


>gi|333001062|gb|EGK20632.1| ech hydrogenase subunit C [Shigella flexneri K-272]
 gi|333015433|gb|EGK34772.1| ech hydrogenase subunit C [Shigella flexneri K-227]
          Length = 99

 Score = 39.7 bits (91), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 1/48 (2%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS-ALR 111
           C +E+     P +D ERFG     SPR +D+++  G +T  M S ALR
Sbjct: 51  CEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALR 98


>gi|149717|gb|AAA72189.1| F420 hydrogenase gamma-subuint (frhG) [Methanothermobacter
           thermautotrophicus]
          Length = 236

 Score = 39.7 bits (91), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 24/92 (26%), Positives = 45/92 (48%), Gaps = 11/92 (11%)

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS----------YS 141
           + D+ +V G++  +   +L  + +   + + V + GSCA  G +  YS           S
Sbjct: 56  EMDLALVEGSVCLQDEHSLHELKELREKAKLVCAFGSCAQTGCFTRYSRGGQQAQPSHES 115

Query: 142 VVRGCDRIVPVDIYVPGCPPTAEALIYGILLL 173
            V   D ++ VD+ +PGCPP+ E +   ++ L
Sbjct: 116 FVPIAD-LIDVDLAIPGCPPSPEIIAKAVVAL 146


>gi|182415490|ref|YP_001820556.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Opitutus terrae
           PB90-1]
 gi|177842704|gb|ACB76956.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Opitutus terrae
           PB90-1]
          Length = 334

 Score = 39.3 bits (90), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 38/80 (47%), Gaps = 6/80 (7%)

Query: 110 LRRVYDQMP---EPRYVISMGSCANGGGYYHYSY--SVVRGCDRIVPVDIYVPGCPPTAE 164
           L  VY+Q P    P +V    +  N G           VR  D++V VD Y+PGCPPT +
Sbjct: 112 LSYVYEQTPTIDNPTHVRPQPAHQNNGHSLTLPEFRHTVRSLDQVVAVDYYIPGCPPTPK 171

Query: 165 ALIYGIL-LLQKKIRRVGNV 183
                I  LL+ K+   G+V
Sbjct: 172 ITKAAITALLEGKLPPRGSV 191


>gi|24216977|ref|NP_714458.1| metal (Ni/Fe) hydrogenase small subunit [Leptospira interrogans
           serovar Lai str. 56601]
 gi|24198376|gb|AAN51476.1| metal (Ni/Fe) hydrogenase small subunit [Leptospira interrogans
           serovar Lai str. 56601]
          Length = 273

 Score = 39.3 bits (90), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 20/86 (23%), Positives = 40/86 (46%), Gaps = 7/86 (8%)

Query: 88  ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCD 147
           ASP+ +D ++ +G +   M   L   ++ MP P+ +++ GS A  GG +       +   
Sbjct: 172 ASPKHADALVYSGPVGPNMEGPLDTAWETMPSPKALVACGSEAVSGGLFKLGKLPKQP-- 229

Query: 148 RIVPVDIYVPGCPPTAEALIYGILLL 173
                D+++ G PP  + ++     L
Sbjct: 230 -----DLFIGGDPPRPDVIVSAFRYL 250


>gi|45659241|ref|YP_003327.1| hydrogenase subunit [Leptospira interrogans serovar Copenhageni
           str. Fiocruz L1-130]
 gi|45602487|gb|AAS71964.1| hydrogenase subunit [Leptospira interrogans serovar Copenhageni
           str. Fiocruz L1-130]
          Length = 273

 Score = 39.3 bits (90), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 20/86 (23%), Positives = 40/86 (46%), Gaps = 7/86 (8%)

Query: 88  ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCD 147
           ASP+ +D ++ +G +   M   L   ++ MP P+ +++ GS A  GG +       +   
Sbjct: 172 ASPKHADALVYSGPVGPNMEGPLDTAWETMPSPKALVACGSEAVSGGLFKLGKLPKQP-- 229

Query: 148 RIVPVDIYVPGCPPTAEALIYGILLL 173
                D+++ G PP  + ++     L
Sbjct: 230 -----DLFIGGDPPRPDVIVSAFRYL 250


>gi|254173024|ref|ZP_04879698.1| hydrogenase  (cytochrome-c3 hydrogenase delta chain) [Thermococcus
           sp. AM4]
 gi|214033180|gb|EEB74008.1| hydrogenase (cytochrome-c3 hydrogenase delta chain) [Thermococcus
           sp. AM4]
          Length = 241

 Score = 39.3 bits (90), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 33/125 (26%), Positives = 53/125 (42%), Gaps = 24/125 (19%)

Query: 77  YDLERFGFAPRASPRQSDVMIVAGTL-TNKMASALRRVYDQMPEPRYVISMGSCANGG-- 133
           Y++E F  A R   R  DV +V GT+ +++    LR   ++     Y+I++G+CA  G  
Sbjct: 32  YEIEEFHMATRLEGRHFDVGLVTGTVSSHRDLEVLREARNRS---DYLIALGTCATHGCL 88

Query: 134 -------------GYYHYSYSVVRGCD-----RIVPVDIYVPGCPPTAEALIYGILLLQK 175
                          Y    + +R  D       V VD+ +PGCP     L   ++ + K
Sbjct: 89  QASVELPLKEKLKAVYGDEGNPMRALDPKPVVEYVTVDLAIPGCPYDKNELFQALIDIAK 148

Query: 176 KIRRV 180
            I  V
Sbjct: 149 GIEPV 153


>gi|114707869|ref|ZP_01440762.1| hypothetical protein FP2506_00150 [Fulvimarina pelagi HTCC2506]
 gi|114536647|gb|EAU39778.1| hypothetical protein FP2506_00150 [Fulvimarina pelagi HTCC2506]
          Length = 391

 Score = 38.9 bits (89), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 16/41 (39%), Positives = 25/41 (60%)

Query: 84  FAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           F   ASPR + + ++AG +  +    LRR++DQMP PR  +
Sbjct: 24  FVRAASPRHAAIFLIAGRMRLEDREDLRRLHDQMPHPRVTL 64


>gi|44707|emb|CAA43502.1| F420-reducing hydrogenase subunit [Methanococcus voltae PS]
          Length = 228

 Score = 38.9 bits (89), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 19/90 (21%), Positives = 41/90 (45%), Gaps = 9/90 (10%)

Query: 87  RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS------- 139
           R  P   D++++ G++      AL        + + ++++G+CA  G    +S       
Sbjct: 45  REVPDDVDIILLEGSVCLSDHHALETALACREKAKILVALGACAASGNITRFSRGGQMSK 104

Query: 140 --YSVVRGCDRIVPVDIYVPGCPPTAEALI 167
             +        +V  D+ +PGCPP+ E+++
Sbjct: 105 PVHDAFAPLTEVVKCDLAIPGCPPSPESIV 134


>gi|3334464|sp|P19498|FRHG_METTH RecName: Full=Coenzyme F420 hydrogenase subunit gamma; AltName:
           Full=8-hydroxy-5-deazaflavin-reducing hydrogenase
           subunit gamma; Short=FRH
          Length = 236

 Score = 38.9 bits (89), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 24/92 (26%), Positives = 45/92 (48%), Gaps = 11/92 (11%)

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS----------YS 141
           + D+ +V G++  +   +L  + +   + + V + GSCA  G +  YS           S
Sbjct: 56  EMDLALVEGSVCLQDEHSLHELKELREKAKLVCAFGSCAATGCFTRYSRGGQQAQPSHES 115

Query: 142 VVRGCDRIVPVDIYVPGCPPTAEALIYGILLL 173
            V   D ++ VD+ +PGCPP+ E +   ++ L
Sbjct: 116 FVPIAD-LIDVDLAIPGCPPSPEIIAKAVVAL 146


>gi|15679300|ref|NP_276417.1| coenzyme F420-reducing hydrogenase, gamma subunit
           [Methanothermobacter thermautotrophicus str. Delta H]
 gi|2622405|gb|AAB85778.1| coenzyme F420-reducing hydrogenase, gamma subunit
           [Methanothermobacter thermautotrophicus str. Delta H]
          Length = 275

 Score = 38.9 bits (89), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 24/92 (26%), Positives = 45/92 (48%), Gaps = 11/92 (11%)

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS----------YS 141
           + D+ +V G++  +   +L  + +   + + V + GSCA  G +  YS           S
Sbjct: 95  EMDLALVEGSVCLQDEHSLHELKELREKAKLVCAFGSCAATGCFTRYSRGGQQAQPSHES 154

Query: 142 VVRGCDRIVPVDIYVPGCPPTAEALIYGILLL 173
            V   D ++ VD+ +PGCPP+ E +   ++ L
Sbjct: 155 FVPIAD-LIDVDLAIPGCPPSPEIIAKAVVAL 185


>gi|45358947|ref|NP_988504.1| coenzyme F420-reducing hydrogenase subunit gamma [Methanococcus
           maripaludis S2]
 gi|45047813|emb|CAF30940.1| coenzyme F420-reducing hydrogenase subunit gamma [Methanococcus
           maripaludis S2]
          Length = 228

 Score = 38.9 bits (89), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 19/94 (20%), Positives = 44/94 (46%), Gaps = 9/94 (9%)

Query: 87  RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS------- 139
           R  P   D++++ G++      A+    +   + + ++++G+CA  G    +S       
Sbjct: 45  REIPDDVDIVLLEGSVCLSDHHAMEVALESRKKGKILVALGACAASGNITRFSKGNQPSK 104

Query: 140 --YSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171
             +        +V  D+ +PGCPP+ E+++  +L
Sbjct: 105 PVHDSFAPLTEVVKCDLAIPGCPPSPESIVAVVL 138


>gi|154243755|ref|YP_001409328.1| Ni Fe-hydrogenase III large subunit-like protein [Xanthobacter
           autotrophicus Py2]
 gi|154246208|ref|YP_001417166.1| Ni Fe-hydrogenase III large subunit-like protein [Xanthobacter
           autotrophicus Py2]
 gi|154160293|gb|ABS67509.1| Ni Fe-hydrogenase III large subunit-like protein [Xanthobacter
           autotrophicus Py2]
 gi|154162877|gb|ABS70092.1| Ni Fe-hydrogenase III large subunit-like protein [Xanthobacter
           autotrophicus Py2]
          Length = 110

 Score = 38.9 bits (89), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 20/52 (38%), Positives = 26/52 (50%)

Query: 77  YDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGS 128
            DL R G      PRQ++V++V   L   M  A    Y QMP PR V+ +G 
Sbjct: 46  LDLSRAGLTEADGPRQANVLLVMLPLPAPMLKAATVAYAQMPRPRTVLVLGE 97


>gi|218782785|ref|YP_002434103.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfatibacillum
           alkenivorans AK-01]
 gi|218764169|gb|ACL06635.1| F420-non-reducing hydrogenase, iron-sulfur subunit, MvhG
           [Desulfatibacillum alkenivorans AK-01]
          Length = 312

 Score = 38.5 bits (88), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 28/116 (24%), Positives = 51/116 (43%), Gaps = 34/116 (29%)

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGG----------------Y 135
           Q+DV I++G + N+    + +V  +     ++I++G+CA  GG                Y
Sbjct: 61  QADVGIISGGIRNEEHLEVAKVMRE--RCGFIIALGTCATHGGIPSLANSYTPEQIFERY 118

Query: 136 YHYSYS-------------VVRGCDRI---VPVDIYVPGCPPTAEALIYGILLLQK 175
           YH   +             ++  CD +   + VD+ VPGCPP  + +   ++ L K
Sbjct: 119 YHTETTDPADFVPNQGLPALLESCDAVDQHIKVDLLVPGCPPHPDHIFSALVALVK 174


>gi|297619514|ref|YP_003707619.1| coenzyme F420 hydrogenase subunit gamma [Methanococcus voltae A3]
 gi|297378491|gb|ADI36646.1| coenzyme F420 hydrogenase, subunit gamma [Methanococcus voltae A3]
          Length = 228

 Score = 38.5 bits (88), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 19/90 (21%), Positives = 40/90 (44%), Gaps = 9/90 (10%)

Query: 87  RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS------- 139
           R  P   D++++ G++      AL        + + ++++G+CA  G    +S       
Sbjct: 45  REVPDDVDIILLEGSVCINDHHALETALACRKKAKILVALGACAASGNITRFSRGGQMSK 104

Query: 140 --YSVVRGCDRIVPVDIYVPGCPPTAEALI 167
             +        +V  D+ +PGCPP+ E ++
Sbjct: 105 PVHDAFAPLTEVVKCDLAIPGCPPSPEIIV 134


>gi|15668907|ref|NP_247711.1| coenzyme F420-reducing hydrogenase subunit gamma
           [Methanocaldococcus jannaschii DSM 2661]
 gi|2496112|sp|Q58136|Y726_METJA RecName: Full=Uncharacterized protein MJ0726
 gi|1591442|gb|AAB98722.1| coenzyme F420-reducing hydrogenase, gamma subunit
           [Methanocaldococcus jannaschii DSM 2661]
          Length = 216

 Score = 38.1 bits (87), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 19/83 (22%), Positives = 40/83 (48%), Gaps = 7/83 (8%)

Query: 91  RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR-- 148
           ++ D+++V G +       ++++ +     + +I++GSCA  GG+      +  G  +  
Sbjct: 23  KEKDIVLVGGAVNLDDEEEVKKIMEIRKNSKVLIAVGSCAVSGGFQRMLIGLENGFPQRF 82

Query: 149 -----IVPVDIYVPGCPPTAEAL 166
                +V VD  + GCPP  E +
Sbjct: 83  VRIGDVVKVDYAIIGCPPDEEEV 105


>gi|303243618|ref|ZP_07329960.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanothermococcus
           okinawensis IH1]
 gi|302486179|gb|EFL49101.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanothermococcus
           okinawensis IH1]
          Length = 145

 Score = 38.1 bits (87), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 18/89 (20%), Positives = 44/89 (49%), Gaps = 9/89 (10%)

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS---------YSV 142
           ++D++++ G++      A+    +   + + ++++G+CA  GG   +S         +  
Sbjct: 49  EADIVLLEGSVCLDDHHAMEVAQEARKKGKILVALGACAATGGVTRFSRGGQMSKPVHGS 108

Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGIL 171
                 +V  D+ +PGCPP+ E ++  +L
Sbjct: 109 FSPLTEVVKCDLAIPGCPPSPEIIVNVVL 137


>gi|14521156|ref|NP_126631.1| hydrogenase (cytochrome-c3 hydrogenase delta chain) [Pyrococcus
           abyssi GE5]
 gi|5458374|emb|CAB49862.1| Sulfhydrogenase II, delta chain [Pyrococcus abyssi GE5]
          Length = 241

 Score = 38.1 bits (87), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 31/105 (29%), Positives = 44/105 (41%), Gaps = 23/105 (21%)

Query: 77  YDLERFGFAPRASPRQS-DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY 135
           YD+  F  A     R+  DV +V G+++ +    L  V D      Y+I++G+CA  GG 
Sbjct: 35  YDIAEFHMATSQRGREKLDVALVTGSVSTQ--RDLEVVKDARNRAEYLIALGTCATHGGV 92

Query: 136 Y-HYSYSVVRGCDRI-------------------VPVDIYVPGCP 160
                 SV  G  +I                   VPVD  +PGCP
Sbjct: 93  QGSIEGSVKEGLRKIYGDMKGPSKVLEPRAVVEHVPVDFAIPGCP 137


>gi|125539136|gb|EAY85531.1| hypothetical protein OsI_06904 [Oryza sativa Indica Group]
          Length = 65

 Score = 38.1 bits (87), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 21/40 (52%), Positives = 25/40 (62%), Gaps = 2/40 (5%)

Query: 38 FLVTSVDQLVTWARTGSLMW-MTFGLACCAVEMMQASMPR 76
          F+++ VD L+ WAR G LMW MTF L   AVEMM     R
Sbjct: 27 FVISKVDDLMNWARRG-LMWPMTFRLTYYAVEMMHKGASR 65


>gi|148656787|ref|YP_001276992.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Roseiflexus sp.
           RS-1]
 gi|148568897|gb|ABQ91042.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Roseiflexus sp.
           RS-1]
          Length = 127

 Score = 38.1 bits (87), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 9/85 (10%)

Query: 89  SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 148
           +P ++DV+++ G LT     A   +  ++     +I++G CA  G      +   RG   
Sbjct: 34  TPHEADVLLLTGPLTTDTKKAFMALLQELDHRAPIIAVGRCAIDG------HPFGRGGVA 87

Query: 149 IVP---VDIYVPGCPPTAEALIYGI 170
           ++P   V + + GCPPT   ++  I
Sbjct: 88  VIPNLTVHLSLDGCPPTPTQIVEAI 112


>gi|320160377|ref|YP_004173601.1| bidirectional hydrogenase Y subunit [Anaerolinea thermophila UNI-1]
 gi|319994230|dbj|BAJ63001.1| bidirectional hydrogenase Y subunit [Anaerolinea thermophila UNI-1]
          Length = 180

 Score = 38.1 bits (87), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 13/26 (50%), Positives = 18/26 (69%)

Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIY 168
           VR    +VPVD++VPGCPP  + + Y
Sbjct: 134 VRAVHEVVPVDVFVPGCPPDPDVIFY 159


>gi|148255573|ref|YP_001240158.1| hypothetical protein BBta_4195 [Bradyrhizobium sp. BTAi1]
 gi|146407746|gb|ABQ36252.1| hypothetical protein BBta_4195 [Bradyrhizobium sp. BTAi1]
          Length = 73

 Score = 37.7 bits (86), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 19/26 (73%)

Query: 133 GGYYHYSYSVVRGCDRIVPVDIYVPG 158
           GG YH+  SVV GC RIVPVD YV G
Sbjct: 13  GGDYHHDCSVVGGCSRIVPVDSYVLG 38


>gi|304315421|ref|YP_003850568.1| F420-reducing hydrogenase, subunit gamma [Methanothermobacter
           marburgensis str. Marburg]
 gi|302588880|gb|ADL59255.1| F420-reducing hydrogenase, subunit gamma [Methanothermobacter
           marburgensis str. Marburg]
          Length = 275

 Score = 37.4 bits (85), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 24/92 (26%), Positives = 45/92 (48%), Gaps = 11/92 (11%)

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS----------YS 141
           + D+ +V G++  +   +L  + +   + + V + GSCA  G +  YS           S
Sbjct: 95  EMDLALVEGSVCLQDEHSLHELKELREKAKLVCAFGSCAATGCFTRYSRGGQQAQPSHES 154

Query: 142 VVRGCDRIVPVDIYVPGCPPTAEALIYGILLL 173
            V   D ++ VD+ +PGCPP+ E +   ++ L
Sbjct: 155 FVPIAD-LIDVDLALPGCPPSPEIIAKTVVAL 185


>gi|332159193|ref|YP_004424472.1| hydrogenase (cytochrome-c3 hydrogenase delta chain) [Pyrococcus sp.
           NA2]
 gi|331034656|gb|AEC52468.1| hydrogenase (cytochrome-c3 hydrogenase delta chain) [Pyrococcus sp.
           NA2]
          Length = 239

 Score = 37.4 bits (85), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 32/125 (25%), Positives = 54/125 (43%), Gaps = 23/125 (18%)

Query: 77  YDLERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY 135
           Y++  F  A  + S  + DV IV G+++ +    L  V +      Y+I++G+CA  GG 
Sbjct: 33  YEIVEFHMATSQRSKEKLDVAIVTGSVSTQ--RDLEVVKEARNRAEYLIALGTCATHGGV 90

Query: 136 -----------YHYSYSVVRGCDRI---------VPVDIYVPGCPPTAEALIYGILLLQK 175
                          Y  +RG  ++         VPVD  +PGCP   E +   ++ + K
Sbjct: 91  QGGLENSVKENMKKVYGDIRGPTKVLEPRAVIDYVPVDFAIPGCPYEKEEVFQVLIDIAK 150

Query: 176 KIRRV 180
            +  V
Sbjct: 151 GVDPV 155


>gi|116662187|ref|YP_829242.1| hypothetical protein Arth_4492 [Arthrobacter sp. FB24]
 gi|116612939|gb|ABK05661.1| hypothetical protein Arth_4492 [Arthrobacter sp. FB24]
          Length = 364

 Score = 37.4 bits (85), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 16/54 (29%), Positives = 30/54 (55%)

Query: 78  DLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCAN 131
           DL   G+ P  SP  +D++ + G     +A  L R++D++P PR   ++ + A+
Sbjct: 35  DLVERGWVPALSPADADILCLCGEPAADLAGVLDRIWDELPSPRARTTVVAAAD 88


>gi|254459031|ref|ZP_05072454.1| NADH ubiquinone oxidoreductase, 20 kda subunit [Campylobacterales
           bacterium GD 1]
 gi|207084302|gb|EDZ61591.1| NADH ubiquinone oxidoreductase, 20 kda subunit [Campylobacterales
           bacterium GD 1]
          Length = 287

 Score = 37.4 bits (85), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 27/100 (27%), Positives = 48/100 (48%), Gaps = 16/100 (16%)

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPE----PRYVISMGSCANGGGYYHYS-YSVVRGC-- 146
           D+M++ GT+++    A   V D + +     + ++++G+CA  GG +  S Y    G   
Sbjct: 54  DIMLIEGTISDDFKRADVLVVDIIKKYAKIVKKIVTVGTCATFGGIFKESDYENATGLHF 113

Query: 147 DRIVPVD---------IYVPGCPPTAEALIYGILLLQKKI 177
           DR  P+D         I V GCP   E L+  +  ++K +
Sbjct: 114 DRNKPIDSFKNLLDKTISVSGCPVHPETLVNTLYAIKKSV 153


>gi|300088029|ref|YP_003758551.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
 gi|299527762|gb|ADJ26230.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
          Length = 249

 Score = 37.4 bits (85), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 31/126 (24%), Positives = 51/126 (40%), Gaps = 36/126 (28%)

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY--------------- 136
           + D+  + G++T +  S + R+ +       ++++G+CA  GG                 
Sbjct: 50  EYDIAFIEGSITRE--SEIARLKEIRERAAVLVALGACACTGGINCMKNAYETEELLKGV 107

Query: 137 ------HYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGI--LLLQKK-----------I 177
                 +Y     R  D +V VD Y+ GCPPT    +  +  LLL KK            
Sbjct: 108 YGDCAAYYDTIPTRPADAVVKVDAYIRGCPPTTTEFVKVVKSLLLGKKADLPNYPVCTEC 167

Query: 178 RRVGNV 183
           RR GN+
Sbjct: 168 RRAGNI 173


>gi|254431413|ref|ZP_05045116.1| F420-non reducing hydrogenase, subunit gamma [Cyanobium sp. PCC
           7001]
 gi|197625866|gb|EDY38425.1| F420-non reducing hydrogenase, subunit gamma [Cyanobium sp. PCC
           7001]
          Length = 193

 Score = 37.0 bits (84), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 37/136 (27%), Positives = 49/136 (36%), Gaps = 46/136 (33%)

Query: 84  FAPRAS-----PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCA-------- 130
           F+P AS     P   DV +V G + N  A  L          R V+S G CA        
Sbjct: 45  FSPVASDIKQFPENVDVCLVEGAVAN--ADNLELALQLRQRSRLVVSFGDCAVTGNVPAL 102

Query: 131 -------NGG--------GYYHYS----------------YSVVRGCDRIVPVDIYVPGC 159
                  +GG        GY   +                   VR    ++ VD+Y+PGC
Sbjct: 103 RNLWSEVDGGSRQSVLDRGYLELADTGAQHPHAPGIVPELLERVRPLHEVIAVDLYLPGC 162

Query: 160 PPTAEALIYGILLLQK 175
           PP+AE +   I  L K
Sbjct: 163 PPSAERIRAAIEPLLK 178


>gi|217966523|ref|YP_002352029.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Dictyoglomus
           turgidum DSM 6724]
 gi|217335622|gb|ACK41415.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Dictyoglomus
           turgidum DSM 6724]
          Length = 180

 Score = 36.6 bits (83), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 11/25 (44%), Positives = 20/25 (80%)

Query: 144 RGCDRIVPVDIYVPGCPPTAEALIY 168
           +  + ++ VD+Y+PGCPP+A+A+ Y
Sbjct: 135 KAVNEVIKVDLYIPGCPPSADAIYY 159


>gi|206900904|ref|YP_002251593.1| NAD-reducing hydrogenase HoxS delta subunit [Dictyoglomus
           thermophilum H-6-12]
 gi|206740007|gb|ACI19065.1| NAD-reducing hydrogenase HoxS delta subunit [Dictyoglomus
           thermophilum H-6-12]
          Length = 180

 Score = 36.6 bits (83), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 12/25 (48%), Positives = 20/25 (80%)

Query: 144 RGCDRIVPVDIYVPGCPPTAEALIY 168
           +  + ++ VD+YVPGCPP+A+A+ Y
Sbjct: 135 KAVNEVIKVDLYVPGCPPSADAIYY 159


>gi|147919453|ref|YP_686807.1| coenzyme F420-reducing hydrogenase, gamma subunit [uncultured
           methanogenic archaeon RC-I]
 gi|110622203|emb|CAJ37481.1| coenzyme F420-reducing hydrogenase, gamma subunit [uncultured
           methanogenic archaeon RC-I]
          Length = 233

 Score = 36.6 bits (83), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 20/82 (24%), Positives = 38/82 (46%), Gaps = 9/82 (10%)

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCA---------NGGGYYHYSYSVVR 144
           D+ IV G++  +   ++  + +   +   V+++G CA          GG      +    
Sbjct: 55  DISIVEGSVCLQDEHSVHLIKEAREKSGLVVALGGCAATGCVCNFCRGGQANQPQHESFV 114

Query: 145 GCDRIVPVDIYVPGCPPTAEAL 166
             +++V VD Y+PGCPP  E +
Sbjct: 115 PINKLVKVDAYIPGCPPAPEVI 136


>gi|325957978|ref|YP_004289444.1| coenzyme F420 hydrogenase subunit gamma [Methanobacterium sp.
           AL-21]
 gi|325329410|gb|ADZ08472.1| coenzyme F420 hydrogenase, subunit gamma [Methanobacterium sp.
           AL-21]
          Length = 261

 Score = 36.6 bits (83), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 23/85 (27%), Positives = 43/85 (50%), Gaps = 11/85 (12%)

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS----------YS 141
           + D+++V G++  +   +++ + +   +   V++ GSCA  G +  YS           S
Sbjct: 81  EMDLVLVEGSVCLQDEHSVKELKEAREKAGLVVAFGSCAATGCFTRYSRGGQQARPDHES 140

Query: 142 VVRGCDRIVPVDIYVPGCPPTAEAL 166
            V   D +V VD  +PGCPP+ E +
Sbjct: 141 FVPIAD-LVKVDCAIPGCPPSPEII 164


>gi|119510365|ref|ZP_01629500.1| hydrogenase small subunit [Nodularia spumigena CCY9414]
 gi|119465002|gb|EAW45904.1| hydrogenase small subunit [Nodularia spumigena CCY9414]
          Length = 181

 Score = 36.6 bits (83), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 28/111 (25%), Positives = 45/111 (40%), Gaps = 36/111 (32%)

Query: 87  RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY------SY 140
           +  P+  DV++V G + N+    L+ ++      R ++S G CA  G           + 
Sbjct: 46  KEYPQGVDVVLVEGAVANE--DHLQMIHQVRERSRILVSFGDCAVTGNVTALRNPLGSAE 103

Query: 141 SVVRGC----------------------------DRIVPVDIYVPGCPPTA 163
            V++ C                             +IVPVDIY+PGCPP+A
Sbjct: 104 PVLQRCYIEAADIHGQIPHEPGIVPTLLDRVVPVHKIVPVDIYMPGCPPSA 154


>gi|219850771|ref|YP_002465203.1| coenzyme F420 hydrogenase, subunit gamma [Methanosphaerula
           palustris E1-9c]
 gi|219545030|gb|ACL15480.1| coenzyme F420 hydrogenase, subunit gamma [Methanosphaerula
           palustris E1-9c]
          Length = 253

 Score = 36.2 bits (82), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 21/87 (24%), Positives = 41/87 (47%), Gaps = 15/87 (17%)

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY------------YHYS 139
           + DV +V G++  +  +A+  + +     + V+++G CA  G               H S
Sbjct: 53  EMDVALVEGSVCLQDKTAVEEIKETRERAKIVVALGGCACYGNITRFSRGGQQNQPQHES 112

Query: 140 YSVVRGCDRIVPVDIYVPGCPPTAEAL 166
           Y  +     ++ VD+Y+PGC PT + +
Sbjct: 113 YLPI---GDLIDVDVYIPGCAPTPQMI 136


>gi|282165081|ref|YP_003357466.1| coenzyme F420 hydrogenase subunit gamma [Methanocella paludicola
           SANAE]
 gi|282157395|dbj|BAI62483.1| coenzyme F420 hydrogenase subunit gamma [Methanocella paludicola
           SANAE]
          Length = 232

 Score = 36.2 bits (82), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 19/82 (23%), Positives = 38/82 (46%), Gaps = 9/82 (10%)

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS---------YSVVR 144
           D+ IV G +  +   ++  + +   +   V++ G C+  G   ++S         +    
Sbjct: 55  DIAIVEGGVCLQDEESVHLIKETREKAGLVVAYGGCSATGNVLNFSRGGQWNQPQHESFV 114

Query: 145 GCDRIVPVDIYVPGCPPTAEAL 166
             +R++ VD Y+PGCPP  E +
Sbjct: 115 PINRLIKVDAYIPGCPPAPEVI 136


>gi|326775109|ref|ZP_08234374.1| hypothetical protein SACT1_0916 [Streptomyces cf. griseus
           XylebKG-1]
 gi|326655442|gb|EGE40288.1| hypothetical protein SACT1_0916 [Streptomyces cf. griseus
           XylebKG-1]
          Length = 440

 Score = 36.2 bits (82), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 31/55 (56%)

Query: 88  ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142
           + P  +D++IVAGT   +M + L RV++ +P PR  I + + A+ G    Y   V
Sbjct: 45  SGPADTDLLIVAGTPGPEMRTVLARVWELVPAPRVRIDLDTQASPGDIGRYLDEV 99


>gi|163744630|ref|ZP_02151990.1| hypothetical protein OIHEL45_03565 [Oceanibulbus indolifex HEL-45]
 gi|161381448|gb|EDQ05857.1| hypothetical protein OIHEL45_03565 [Oceanibulbus indolifex HEL-45]
          Length = 340

 Score = 36.2 bits (82), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 13/33 (39%), Positives = 22/33 (66%)

Query: 89  SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPR 121
           +PR + V++V GT+   +   L R++DQ+P PR
Sbjct: 42  TPRAAAVLLVVGTIPEALIPQLHRLHDQLPHPR 74


>gi|18977703|ref|NP_579060.1| H-II delta (hydrogenase subunit delta) [Pyrococcus furiosus DSM
           3638]
 gi|7406956|gb|AAF61853.1|AF176650_3 sulfhydrogenase II subunit d [Pyrococcus furiosus DSM 3638]
 gi|18893437|gb|AAL81455.1| H-II delta (hydrogenase subunit delta) [Pyrococcus furiosus DSM
           3638]
          Length = 237

 Score = 36.2 bits (82), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 51/126 (40%), Gaps = 22/126 (17%)

Query: 77  YDLERFGFAPRASPRQS-DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY 135
           Y++  F  A     R+  DV +V GT++ +    + R  D      Y+I++G+CA  G  
Sbjct: 32  YEIAEFHMATSKKSREKIDVALVTGTVSTQRDLEVLR--DARNRSEYLIALGTCATHGSV 89

Query: 136 Y------HYSYSVVRGCDR-------------IVPVDIYVPGCPPTAEALIYGILLLQKK 176
                    +Y  V G  +              VPVD  +PGCP   E +   ++ + K 
Sbjct: 90  QGVIENSKEAYRRVYGNGKPPVKLLNPKPVTDYVPVDFAIPGCPYDKEEVFQVLIDIAKG 149

Query: 177 IRRVGN 182
           I  V  
Sbjct: 150 IEPVAK 155


>gi|188496128|ref|ZP_03003398.1| hydrogenase-4 component I [Escherichia coli 53638]
 gi|188491327|gb|EDU66430.1| hydrogenase-4 component I [Escherichia coli 53638]
          Length = 124

 Score = 36.2 bits (82), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 16/33 (48%), Positives = 22/33 (66%), Gaps = 4/33 (12%)

Query: 152 VDIYVPGCPPTAEALIYGIL----LLQKKIRRV 180
           +D+++PGCPPT  A I+G      LLQ+KI  V
Sbjct: 6   IDVWIPGCPPTPAATIHGFAVALGLLQQKIHAV 38


>gi|182434584|ref|YP_001822303.1| hypothetical protein SGR_791 [Streptomyces griseus subsp. griseus
           NBRC 13350]
 gi|178463100|dbj|BAG17620.1| hypothetical protein [Streptomyces griseus subsp. griseus NBRC
           13350]
          Length = 421

 Score = 36.2 bits (82), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 31/55 (56%)

Query: 88  ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142
           + P  +D++IVAGT   +M + L RV++ +P PR  I + + A+ G    Y   V
Sbjct: 29  SGPADTDLLIVAGTPGPEMRTVLARVWELVPAPRVRIDLDTQASPGDIGRYLDEV 83


>gi|333015434|gb|EGK34773.1| formate hydrogenlyase subunit 7 [Shigella flexneri K-227]
          Length = 118

 Score = 35.8 bits (81), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 4/34 (11%)

Query: 152 VDIYVPGCPPTAEALIYGIL----LLQKKIRRVG 181
           +D+Y+PGCPPT  A +YG      LL++KI   G
Sbjct: 1   MDVYIPGCPPTPAATLYGFAMALGLLEQKIHARG 34


>gi|37787354|gb|AAP50522.1| Hox1Y [Thiocapsa roseopersicina]
          Length = 180

 Score = 35.8 bits (81), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 26/113 (23%), Positives = 48/113 (42%), Gaps = 33/113 (29%)

Query: 87  RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY----YHYSYS- 141
           +  P   DV I+ G+++++    L + +      + ++S+G CA  G       H+  + 
Sbjct: 49  KTLPDHVDVGILEGSISSE--DDLEKAHAFRKHCKILVSLGDCAVNGNVPAMRNHFKLAD 106

Query: 142 --------------------------VVRGCDRIVPVDIYVPGCPPTAEALIY 168
                                     VV+    +V VD++VPGCPP+A+A+ Y
Sbjct: 107 VVDRAYRDTVTFQPQTPTQGVPALLAVVKPIHGVVGVDVFVPGCPPSADAIWY 159


>gi|148657643|ref|YP_001277848.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Roseiflexus sp.
           RS-1]
 gi|148569753|gb|ABQ91898.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Roseiflexus sp.
           RS-1]
          Length = 181

 Score = 35.8 bits (81), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 50/120 (41%), Gaps = 41/120 (34%)

Query: 90  PRQSDVMIVAGTLTNKMASAL-RRVYDQMPEPRYVISMGSCANGGG-------------Y 135
           P + DV +V G + N+    L R+V ++    R VI+ G CA  G               
Sbjct: 49  PDRVDVALVEGAVANEDNLHLIRQVRERT---RLVIAFGDCAVTGNVTALRNVLGDPETL 105

Query: 136 YHYSYS---------------VVRGCDRI------VPVDIYVPGCPPTAE---ALIYGIL 171
            H  Y                V R  DR+      VPVD+Y+PGCPP A+   AL+  IL
Sbjct: 106 LHTIYVERADTAGQMPLAPGIVPRLLDRVYPVHKVVPVDVYLPGCPPPAQRIRALLEQIL 165


>gi|315504986|ref|YP_004083873.1| hypothetical protein ML5_4220 [Micromonospora sp. L5]
 gi|315411605|gb|ADU09722.1| hypothetical protein ML5_4220 [Micromonospora sp. L5]
          Length = 532

 Score = 35.8 bits (81), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 36/58 (62%), Gaps = 1/58 (1%)

Query: 71  QASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGS 128
           +A++ R+ L R G+    SP ++D++ V G   +++A  L R+++QMP PR  I + S
Sbjct: 29  RAAVERHVLAR-GWRLALSPAEADILAVCGPPPSQLAEPLHRLWEQMPGPRARIDVES 85


>gi|156741352|ref|YP_001431481.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Roseiflexus
           castenholzii DSM 13941]
 gi|156232680|gb|ABU57463.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Roseiflexus
           castenholzii DSM 13941]
          Length = 181

 Score = 35.8 bits (81), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 29/109 (26%), Positives = 44/109 (40%), Gaps = 38/109 (34%)

Query: 90  PRQSDVMIVAGTLTNK-MASALRRVYDQMPEPRYVISMGSCANGG-------------GY 135
           P   DV +V G + N+     +R+V ++    R +I+ G CA  G               
Sbjct: 49  PDHVDVALVEGAVANEDHLHLIRQVRERT---RILIAFGDCAVTGNVTALRNPLGAPEAL 105

Query: 136 YHYSY---SVVRGC------------------DRIVPVDIYVPGCPPTA 163
            H  Y   + + GC                   ++VPVD+Y+PGCPP A
Sbjct: 106 LHTIYIERAEIAGCLPHAPGIVPQLLDKVQPVHKVVPVDVYLPGCPPPA 154


>gi|331664273|ref|ZP_08365179.1| formate hydrogenlyase subunit 7 (FHL subunit 7)
           (Hydrogenase-3component G) [Escherichia coli TA143]
 gi|331058204|gb|EGI30185.1| formate hydrogenlyase subunit 7 (FHL subunit 7)
           (Hydrogenase-3component G) [Escherichia coli TA143]
          Length = 88

 Score = 35.4 bits (80), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 13/38 (34%), Positives = 21/38 (55%)

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL 102
           C +E+     P +D ERFG     SPR +D+++  G +
Sbjct: 51  CEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAV 88


>gi|71906620|ref|YP_284207.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Dechloromonas
           aromatica RCB]
 gi|71846241|gb|AAZ45737.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Dechloromonas
           aromatica RCB]
          Length = 182

 Score = 35.4 bits (80), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 33/124 (26%), Positives = 52/124 (41%), Gaps = 38/124 (30%)

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY----------------YH 137
           D+ I+ G L N     + R + +    + +I+MG+CA  GG                 YH
Sbjct: 56  DIGIIEGGLCNAENVHVLREFRK--NCKILIAMGACAINGGLPAQRNHLPLTTILEEVYH 113

Query: 138 YSYSVVRG-----------------CDRIVPVDIYVPGCPPTAEALIYGIL--LLQKKIR 178
            S  +  G                    +V VD ++PGCPP+A+A I+ +L  LL  K  
Sbjct: 114 TSPGLANGMIPNDPELPLPLNQVHPIHEVVKVDYFMPGCPPSADA-IWKVLTDLLAGKEP 172

Query: 179 RVGN 182
            +G+
Sbjct: 173 ELGH 176


>gi|17228259|ref|NP_484807.1| hydrogenase small subunit [Nostoc sp. PCC 7120]
 gi|17130109|dbj|BAB72721.1| hydrogenase small subunit [Nostoc sp. PCC 7120]
          Length = 181

 Score = 35.4 bits (80), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 48/118 (40%), Gaps = 40/118 (33%)

Query: 84  FAPRAS----PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY- 138
           F+P A     P   DV++V G + N+      ++  +    + +IS G CA  G      
Sbjct: 39  FSPFADIKEYPEGVDVVLVEGAIANEEHLTTIKIVRE--RSQILISFGDCAVTGNVTALR 96

Query: 139 -----SYSVVRGC----------------------DR------IVPVDIYVPGCPPTA 163
                + SV++ C                      DR      IVPVDIY+PGCPP+A
Sbjct: 97  NPLGSAESVLQRCYIQAADINPQIPHEPGIVPSLLDRVTPVHSIVPVDIYLPGCPPSA 154


>gi|158319007|ref|YP_001511515.1| NLP/P60 protein [Frankia sp. EAN1pec]
 gi|158114412|gb|ABW16609.1| NLP/P60 protein [Frankia sp. EAN1pec]
          Length = 329

 Score = 34.7 bits (78), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 3/73 (4%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS---PRQSD 94
           F+ + + +   W  TG   W    L   A   +  S+PR   ++  F PR S   P+  D
Sbjct: 212 FMRSQIGKPYVWGATGPGAWDCSSLVQAAYRTIGISLPRVTTDQLAFGPRVSGVDPQPGD 271

Query: 95  VMIVAGTLTNKMA 107
           ++ + G+    +A
Sbjct: 272 LLFIPGSDGTALA 284


>gi|257053168|ref|YP_003131001.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Halorhabdus
           utahensis DSM 12940]
 gi|256691931|gb|ACV12268.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Halorhabdus
           utahensis DSM 12940]
          Length = 191

 Score = 34.7 bits (78), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 14/32 (43%), Positives = 19/32 (59%)

Query: 144 RGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175
           R  D  + VD+YVPGCPP AE +   +  L +
Sbjct: 146 RPLDEYIDVDVYVPGCPPDAEVMKESLEALAR 177


>gi|212224711|ref|YP_002307947.1| Coenzyme F420 hydrogenase gamma subunit [Thermococcus onnurineus
           NA1]
 gi|212009668|gb|ACJ17050.1| Coenzyme F420 hydrogenase gamma subunit [Thermococcus onnurineus
           NA1]
          Length = 225

 Score = 34.7 bits (78), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 20/84 (23%), Positives = 35/84 (41%), Gaps = 9/84 (10%)

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY---------SYSV 142
           + DV I+ G         L  + +   +   V++ GSCA   G   +          +  
Sbjct: 48  EYDVAIITGGACMNEPRILEELKEIREKAHTVVAFGSCATFSGILRFCRGGQEPRPDHRN 107

Query: 143 VRGCDRIVPVDIYVPGCPPTAEAL 166
            +  + ++ VD  +PGCPPT + L
Sbjct: 108 FQPINSVIKVDYSIPGCPPTPQML 131


>gi|116750141|ref|YP_846828.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Syntrophobacter
           fumaroxidans MPOB]
 gi|116699205|gb|ABK18393.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Syntrophobacter
           fumaroxidans MPOB]
          Length = 184

 Score = 34.3 bits (77), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 13/28 (46%), Positives = 20/28 (71%)

Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQK 175
           +++PVDI++PGCPP  E +   I+ L K
Sbjct: 143 QVIPVDIFLPGCPPDPERIWAAIVALLK 170


>gi|75910855|ref|YP_325151.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Anabaena variabilis
           ATCC 29413]
 gi|75704580|gb|ABA24256.1| NAD(P)-dependent nickel-iron dehydrogenase subunit HoxY [Anabaena
           variabilis ATCC 29413]
          Length = 181

 Score = 34.3 bits (77), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 13/15 (86%), Positives = 15/15 (100%)

Query: 149 IVPVDIYVPGCPPTA 163
           IVPVDIY+PGCPP+A
Sbjct: 140 IVPVDIYLPGCPPSA 154


Searching..................................................done


Results from round 2




>gi|254780853|ref|YP_003065266.1| NADH dehydrogenase subunit B [Candidatus Liberibacter asiaticus
           str. psy62]
 gi|254040530|gb|ACT57326.1| NADH dehydrogenase subunit B [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 185

 Score =  294 bits (752), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 185/185 (100%), Positives = 185/185 (100%)

Query: 1   MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTF 60
           MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTF
Sbjct: 1   MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTF 60

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP
Sbjct: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV
Sbjct: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180

Query: 181 GNVKC 185
           GNVKC
Sbjct: 181 GNVKC 185


>gi|315122725|ref|YP_004063214.1| NADH dehydrogenase subunit B [Candidatus Liberibacter solanacearum
           CLso-ZC1]
 gi|313496127|gb|ADR52726.1| NADH dehydrogenase subunit B [Candidatus Liberibacter solanacearum
           CLso-ZC1]
          Length = 185

 Score =  271 bits (692), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 158/184 (85%), Positives = 168/184 (91%)

Query: 1   MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTF 60
           MGLT  ++KI+   SS SLEK   DF    +E+ +KGFLV  +DQLVTWARTGSLMWMTF
Sbjct: 1   MGLTKFDRKIVVDHSSFSLEKAGMDFPSTDTELMNKGFLVAPIDQLVTWARTGSLMWMTF 60

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP
Sbjct: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD+YVPGCPPTAEALIYGILLLQKKIRR+
Sbjct: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALIYGILLLQKKIRRI 180

Query: 181 GNVK 184
           GN+K
Sbjct: 181 GNIK 184


>gi|153009751|ref|YP_001370966.1| NADH dehydrogenase subunit B [Ochrobactrum anthropi ATCC 49188]
 gi|218527999|sp|A6X1N3|NUOB_OCHA4 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|151561639|gb|ABS15137.1| NADH-quinone oxidoreductase, B subunit [Ochrobactrum anthropi ATCC
           49188]
          Length = 193

 Score =  269 bits (687), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 144/192 (75%), Positives = 161/192 (83%), Gaps = 8/192 (4%)

Query: 1   MGLTTVNQKIISGQS--------SCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWART 52
           MGLTT N  +++ Q            +   DA F+ ++SE++ KGF+VTS D L+TWART
Sbjct: 1   MGLTTANTTLVAPQPKGILDPRTGKPVGSDDAFFNDLNSELSDKGFIVTSADALITWART 60

Query: 53  GSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRR 112
           GSLMWMTFGLACCAVEMM  SMPRYD ERFG APRASPRQSDVMIVAGTLTNKMA ALR+
Sbjct: 61  GSLMWMTFGLACCAVEMMHISMPRYDAERFGIAPRASPRQSDVMIVAGTLTNKMAPALRK 120

Query: 113 VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILL 172
           VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR+VPVDIYVPGCPPTAEAL+YGIL+
Sbjct: 121 VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRVVPVDIYVPGCPPTAEALLYGILM 180

Query: 173 LQKKIRRVGNVK 184
           LQKKIRR G ++
Sbjct: 181 LQKKIRRTGTIE 192


>gi|239831687|ref|ZP_04680016.1| NADH-quinone oxidoreductase, B subunit [Ochrobactrum intermedium
           LMG 3301]
 gi|239823954|gb|EEQ95522.1| NADH-quinone oxidoreductase, B subunit [Ochrobactrum intermedium
           LMG 3301]
          Length = 193

 Score =  268 bits (686), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 143/192 (74%), Positives = 161/192 (83%), Gaps = 8/192 (4%)

Query: 1   MGLTTVNQKIISGQS--------SCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWART 52
           MGLT+ N  +++ Q            +   DA F+ ++SE++ KGF+VTS D L+TWART
Sbjct: 1   MGLTSANTTLVAPQPKGILDPRTGKPVGSDDAFFNDLNSELSDKGFIVTSADALITWART 60

Query: 53  GSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRR 112
           GSLMWMTFGLACCAVEMM  SMPRYD ERFG APRASPRQSDVMIVAGTLTNKMA ALR+
Sbjct: 61  GSLMWMTFGLACCAVEMMHISMPRYDAERFGIAPRASPRQSDVMIVAGTLTNKMAPALRK 120

Query: 113 VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILL 172
           VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR+VPVDIYVPGCPPTAEAL+YGIL+
Sbjct: 121 VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRVVPVDIYVPGCPPTAEALLYGILM 180

Query: 173 LQKKIRRVGNVK 184
           LQKKIRR G ++
Sbjct: 181 LQKKIRRTGTIE 192


>gi|260545498|ref|ZP_05821239.1| NADH-quinone oxidoreductase subunit C/D [Brucella abortus NCTC
           8038]
 gi|297248157|ref|ZP_06931875.1| NADH dehydrogenase I subunit B [Brucella abortus bv. 5 str. B3196]
 gi|260096905|gb|EEW80780.1| NADH-quinone oxidoreductase subunit C/D [Brucella abortus NCTC
           8038]
 gi|297175326|gb|EFH34673.1| NADH dehydrogenase I subunit B [Brucella abortus bv. 5 str. B3196]
          Length = 200

 Score =  267 bits (684), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 144/192 (75%), Positives = 160/192 (83%), Gaps = 8/192 (4%)

Query: 1   MGLTTVNQKIISGQSSCSLEK--------VDADFSRISSEITHKGFLVTSVDQLVTWART 52
           MGLT  N  +++ Q    L+          DA F+ ++ E++ KGF+VTS D L+TWART
Sbjct: 8   MGLTGTNTTLVAPQPKGILDPRTGKTVGSDDAFFNDLNGELSDKGFIVTSADALITWART 67

Query: 53  GSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRR 112
           GSLMWMTFGLACCAVEMM  SMPRYD ERFG APRASPRQSDVMIVAGTLTNKMA ALR+
Sbjct: 68  GSLMWMTFGLACCAVEMMHISMPRYDAERFGIAPRASPRQSDVMIVAGTLTNKMAPALRK 127

Query: 113 VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILL 172
           VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR+VPVDIYVPGCPPTAEAL+YGILL
Sbjct: 128 VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRVVPVDIYVPGCPPTAEALLYGILL 187

Query: 173 LQKKIRRVGNVK 184
           LQKKIRR G ++
Sbjct: 188 LQKKIRRTGTIE 199


>gi|62289752|ref|YP_221545.1| NADH dehydrogenase subunit B [Brucella abortus bv. 1 str. 9-941]
 gi|82699680|ref|YP_414254.1| NADH dehydrogenase subunit B [Brucella melitensis biovar Abortus
           2308]
 gi|189023997|ref|YP_001934765.1| NADH dehydrogenase subunit B [Brucella abortus S19]
 gi|237815239|ref|ZP_04594237.1| NADH-quinone oxidoreductase, B subunit [Brucella abortus str. 2308
           A]
 gi|254689059|ref|ZP_05152313.1| NADH dehydrogenase subunit B [Brucella abortus bv. 6 str. 870]
 gi|254697193|ref|ZP_05159021.1| NADH dehydrogenase subunit B [Brucella abortus bv. 2 str. 86/8/59]
 gi|254730089|ref|ZP_05188667.1| NADH dehydrogenase subunit B [Brucella abortus bv. 4 str. 292]
 gi|256257308|ref|ZP_05462844.1| NADH dehydrogenase subunit B [Brucella abortus bv. 9 str. C68]
 gi|260754557|ref|ZP_05866905.1| NADH-quinone oxidoreductase [Brucella abortus bv. 6 str. 870]
 gi|260757778|ref|ZP_05870126.1| NADH-quinone oxidoreductase [Brucella abortus bv. 4 str. 292]
 gi|260761603|ref|ZP_05873946.1| NADH-quinone oxidoreductase [Brucella abortus bv. 2 str. 86/8/59]
 gi|260883584|ref|ZP_05895198.1| NADH-quinone oxidoreductase subunit B [Brucella abortus bv. 9 str.
           C68]
 gi|75496975|sp|Q57DV0|NUOB_BRUAB RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|123546615|sp|Q2YNC8|NUOB_BRUA2 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|218527975|sp|B2S544|NUOB_BRUA1 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|62195884|gb|AAX74184.1| NuoB, NADH dehydrogenase I, B subunit [Brucella abortus bv. 1 str.
           9-941]
 gi|82615781|emb|CAJ10779.1| NADH ubiquinone oxidoreductase domain, 20 kDa subunit:NADH
           dehydrogenase (ubiquinone), 20 kDa subunit [Brucella
           melitensis biovar Abortus 2308]
 gi|189019569|gb|ACD72291.1| NADH dehydrogenase beta subunit [Brucella abortus S19]
 gi|237790076|gb|EEP64286.1| NADH-quinone oxidoreductase, B subunit [Brucella abortus str. 2308
           A]
 gi|260668096|gb|EEX55036.1| NADH-quinone oxidoreductase [Brucella abortus bv. 4 str. 292]
 gi|260672035|gb|EEX58856.1| NADH-quinone oxidoreductase [Brucella abortus bv. 2 str. 86/8/59]
 gi|260674665|gb|EEX61486.1| NADH-quinone oxidoreductase [Brucella abortus bv. 6 str. 870]
 gi|260873112|gb|EEX80181.1| NADH-quinone oxidoreductase subunit B [Brucella abortus bv. 9 str.
           C68]
          Length = 193

 Score =  267 bits (684), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 144/192 (75%), Positives = 160/192 (83%), Gaps = 8/192 (4%)

Query: 1   MGLTTVNQKIISGQSSCSLEK--------VDADFSRISSEITHKGFLVTSVDQLVTWART 52
           MGLT  N  +++ Q    L+          DA F+ ++ E++ KGF+VTS D L+TWART
Sbjct: 1   MGLTGTNTTLVAPQPKGILDPRTGKTVGSDDAFFNDLNGELSDKGFIVTSADALITWART 60

Query: 53  GSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRR 112
           GSLMWMTFGLACCAVEMM  SMPRYD ERFG APRASPRQSDVMIVAGTLTNKMA ALR+
Sbjct: 61  GSLMWMTFGLACCAVEMMHISMPRYDAERFGIAPRASPRQSDVMIVAGTLTNKMAPALRK 120

Query: 113 VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILL 172
           VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR+VPVDIYVPGCPPTAEAL+YGILL
Sbjct: 121 VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRVVPVDIYVPGCPPTAEALLYGILL 180

Query: 173 LQKKIRRVGNVK 184
           LQKKIRR G ++
Sbjct: 181 LQKKIRRTGTIE 192


>gi|17987440|ref|NP_540074.1| NADH dehydrogenase subunit B [Brucella melitensis bv. 1 str. 16M]
 gi|260563836|ref|ZP_05834322.1| NADH-quinone oxidoreductase subunit C/D [Brucella melitensis bv. 1
           str. 16M]
 gi|260566633|ref|ZP_05837103.1| NADH-quinone oxidoreductase subunit C/D [Brucella suis bv. 4 str.
           40]
 gi|17983133|gb|AAL52338.1| NADH-quinone oxidoreductase chain b [Brucella melitensis bv. 1 str.
           16M]
 gi|260153852|gb|EEW88944.1| NADH-quinone oxidoreductase subunit C/D [Brucella melitensis bv. 1
           str. 16M]
 gi|260156151|gb|EEW91231.1| NADH-quinone oxidoreductase subunit C/D [Brucella suis bv. 4 str.
           40]
          Length = 200

 Score =  267 bits (683), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 143/192 (74%), Positives = 159/192 (82%), Gaps = 8/192 (4%)

Query: 1   MGLTTVNQKIISGQS--------SCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWART 52
           MGLT  N  +++ Q            +   DA F+ ++ E++ KGF+VTS D L+TWART
Sbjct: 8   MGLTGTNTTLVAPQPKGILDPRTGKPVGSDDAFFNDLNGELSDKGFIVTSADALITWART 67

Query: 53  GSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRR 112
           GSLMWMTFGLACCAVEMM  SMPRYD ERFG APRASPRQSDVMIVAGTLTNKMA ALR+
Sbjct: 68  GSLMWMTFGLACCAVEMMHISMPRYDAERFGIAPRASPRQSDVMIVAGTLTNKMAPALRK 127

Query: 113 VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILL 172
           VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR+VPVDIYVPGCPPTAEAL+YGILL
Sbjct: 128 VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRVVPVDIYVPGCPPTAEALLYGILL 187

Query: 173 LQKKIRRVGNVK 184
           LQKKIRR G ++
Sbjct: 188 LQKKIRRTGTIE 199


>gi|23501690|ref|NP_697817.1| NADH dehydrogenase subunit B [Brucella suis 1330]
 gi|148559527|ref|YP_001258781.1| NADH dehydrogenase subunit B [Brucella ovis ATCC 25840]
 gi|161618767|ref|YP_001592654.1| NADH dehydrogenase subunit B [Brucella canis ATCC 23365]
 gi|163843076|ref|YP_001627480.1| NADH dehydrogenase subunit B [Brucella suis ATCC 23445]
 gi|225627300|ref|ZP_03785337.1| NADH-quinone oxidoreductase, B subunit [Brucella ceti str. Cudo]
 gi|225852319|ref|YP_002732552.1| NADH dehydrogenase subunit B [Brucella melitensis ATCC 23457]
 gi|254693541|ref|ZP_05155369.1| NADH dehydrogenase subunit B [Brucella abortus bv. 3 str. Tulya]
 gi|254701571|ref|ZP_05163399.1| NADH dehydrogenase subunit B [Brucella suis bv. 5 str. 513]
 gi|254704118|ref|ZP_05165946.1| NADH dehydrogenase subunit B [Brucella suis bv. 3 str. 686]
 gi|254706982|ref|ZP_05168810.1| NADH dehydrogenase subunit B [Brucella pinnipedialis M163/99/10]
 gi|254709911|ref|ZP_05171722.1| NADH dehydrogenase subunit B [Brucella pinnipedialis B2/94]
 gi|254713912|ref|ZP_05175723.1| NADH dehydrogenase subunit B [Brucella ceti M644/93/1]
 gi|254717030|ref|ZP_05178841.1| NADH dehydrogenase subunit B [Brucella ceti M13/05/1]
 gi|254718912|ref|ZP_05180723.1| NADH dehydrogenase subunit B [Brucella sp. 83/13]
 gi|256031404|ref|ZP_05445018.1| NADH dehydrogenase subunit B [Brucella pinnipedialis M292/94/1]
 gi|256044482|ref|ZP_05447386.1| NADH dehydrogenase subunit B [Brucella melitensis bv. 1 str. Rev.1]
 gi|256060915|ref|ZP_05451073.1| NADH dehydrogenase subunit B [Brucella neotomae 5K33]
 gi|256113333|ref|ZP_05454195.1| NADH dehydrogenase subunit B [Brucella melitensis bv. 3 str. Ether]
 gi|256159525|ref|ZP_05457293.1| NADH dehydrogenase subunit B [Brucella ceti M490/95/1]
 gi|256254812|ref|ZP_05460348.1| NADH dehydrogenase subunit B [Brucella ceti B1/94]
 gi|256264182|ref|ZP_05466714.1| NADH dehydrogenase beta subunit [Brucella melitensis bv. 2 str.
           63/9]
 gi|256369235|ref|YP_003106743.1| NADH dehydrogenase beta subunit [Brucella microti CCM 4915]
 gi|260168538|ref|ZP_05755349.1| NADH dehydrogenase subunit B [Brucella sp. F5/99]
 gi|261213806|ref|ZP_05928087.1| NADH-quinone oxidoreductase [Brucella abortus bv. 3 str. Tulya]
 gi|261218837|ref|ZP_05933118.1| NADH-quinone oxidoreductase subunit B [Brucella ceti M13/05/1]
 gi|261221993|ref|ZP_05936274.1| NADH-quinone oxidoreductase subunit B [Brucella ceti B1/94]
 gi|261314445|ref|ZP_05953642.1| NADH-quinone oxidoreductase subunit B [Brucella pinnipedialis
           M163/99/10]
 gi|261317457|ref|ZP_05956654.1| NADH-quinone oxidoreductase subunit B [Brucella pinnipedialis
           B2/94]
 gi|261321664|ref|ZP_05960861.1| NADH-quinone oxidoreductase subunit B [Brucella ceti M644/93/1]
 gi|261324915|ref|ZP_05964112.1| NADH-quinone oxidoreductase subunit B [Brucella neotomae 5K33]
 gi|261752124|ref|ZP_05995833.1| NADH-quinone oxidoreductase subunit B [Brucella suis bv. 5 str.
           513]
 gi|261754784|ref|ZP_05998493.1| NADH-quinone oxidoreductase subunit B [Brucella suis bv. 3 str.
           686]
 gi|261758011|ref|ZP_06001720.1| NADH dehydrogenase subunit B [Brucella sp. F5/99]
 gi|265983899|ref|ZP_06096634.1| NADH-quinone oxidoreductase subunit B [Brucella sp. 83/13]
 gi|265988493|ref|ZP_06101050.1| NADH-quinone oxidoreductase subunit B [Brucella pinnipedialis
           M292/94/1]
 gi|265990906|ref|ZP_06103463.1| NADH-quinone oxidoreductase subunit B [Brucella melitensis bv. 1
           str. Rev.1]
 gi|265994743|ref|ZP_06107300.1| NADH-quinone oxidoreductase subunit B [Brucella melitensis bv. 3
           str. Ether]
 gi|265997957|ref|ZP_06110514.1| NADH-quinone oxidoreductase subunit B [Brucella ceti M490/95/1]
 gi|294852160|ref|ZP_06792833.1| NADH-quinone oxidoreductase subunit B [Brucella sp. NVSL 07-0026]
 gi|306838240|ref|ZP_07471092.1| NADH-quinone oxidoreductase, B subunit [Brucella sp. NF 2653]
 gi|306841959|ref|ZP_07474636.1| NADH-quinone oxidoreductase, B subunit [Brucella sp. BO2]
 gi|306843740|ref|ZP_07476339.1| NADH-quinone oxidoreductase, B subunit [Brucella sp. BO1]
 gi|81752805|sp|Q8G1B6|NUOB_BRUSU RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|218527976|sp|A9MAI0|NUOB_BRUC2 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|218527977|sp|A5VPY4|NUOB_BRUO2 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|218527978|sp|B0CLD0|NUOB_BRUSI RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|218528072|sp|Q8YGK1|NUOB_BRUME RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|254767790|sp|C0RIE0|NUOB_BRUMB RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|23347612|gb|AAN29732.1| NADH dehydrogenase I, B subunit [Brucella suis 1330]
 gi|148370784|gb|ABQ60763.1| NADH dehydrogenase I, B subunit [Brucella ovis ATCC 25840]
 gi|161335578|gb|ABX61883.1| NADH-quinone oxidoreductase, B subunit [Brucella canis ATCC 23365]
 gi|163673799|gb|ABY37910.1| NADH-quinone oxidoreductase, B subunit [Brucella suis ATCC 23445]
 gi|225617305|gb|EEH14350.1| NADH-quinone oxidoreductase, B subunit [Brucella ceti str. Cudo]
 gi|225640684|gb|ACO00598.1| NADH-quinone oxidoreductase, B subunit [Brucella melitensis ATCC
           23457]
 gi|255999395|gb|ACU47794.1| NADH dehydrogenase beta subunit [Brucella microti CCM 4915]
 gi|260915413|gb|EEX82274.1| NADH-quinone oxidoreductase [Brucella abortus bv. 3 str. Tulya]
 gi|260920577|gb|EEX87230.1| NADH-quinone oxidoreductase subunit B [Brucella ceti B1/94]
 gi|260923926|gb|EEX90494.1| NADH-quinone oxidoreductase subunit B [Brucella ceti M13/05/1]
 gi|261294354|gb|EEX97850.1| NADH-quinone oxidoreductase subunit B [Brucella ceti M644/93/1]
 gi|261296680|gb|EEY00177.1| NADH-quinone oxidoreductase subunit B [Brucella pinnipedialis
           B2/94]
 gi|261300895|gb|EEY04392.1| NADH-quinone oxidoreductase subunit B [Brucella neotomae 5K33]
 gi|261303471|gb|EEY06968.1| NADH-quinone oxidoreductase subunit B [Brucella pinnipedialis
           M163/99/10]
 gi|261737995|gb|EEY25991.1| NADH dehydrogenase subunit B [Brucella sp. F5/99]
 gi|261741877|gb|EEY29803.1| NADH-quinone oxidoreductase subunit B [Brucella suis bv. 5 str.
           513]
 gi|261744537|gb|EEY32463.1| NADH-quinone oxidoreductase subunit B [Brucella suis bv. 3 str.
           686]
 gi|262552425|gb|EEZ08415.1| NADH-quinone oxidoreductase subunit B [Brucella ceti M490/95/1]
 gi|262765856|gb|EEZ11645.1| NADH-quinone oxidoreductase subunit B [Brucella melitensis bv. 3
           str. Ether]
 gi|263001690|gb|EEZ14265.1| NADH-quinone oxidoreductase subunit B [Brucella melitensis bv. 1
           str. Rev.1]
 gi|263094400|gb|EEZ18245.1| NADH dehydrogenase beta subunit [Brucella melitensis bv. 2 str.
           63/9]
 gi|264660690|gb|EEZ30951.1| NADH-quinone oxidoreductase subunit B [Brucella pinnipedialis
           M292/94/1]
 gi|264662491|gb|EEZ32752.1| NADH-quinone oxidoreductase subunit B [Brucella sp. 83/13]
 gi|294820749|gb|EFG37748.1| NADH-quinone oxidoreductase subunit B [Brucella sp. NVSL 07-0026]
 gi|306275931|gb|EFM57644.1| NADH-quinone oxidoreductase, B subunit [Brucella sp. BO1]
 gi|306287950|gb|EFM59361.1| NADH-quinone oxidoreductase, B subunit [Brucella sp. BO2]
 gi|306406684|gb|EFM62911.1| NADH-quinone oxidoreductase, B subunit [Brucella sp. NF 2653]
 gi|326408826|gb|ADZ65891.1| NADH dehydrogenase subunit B [Brucella melitensis M28]
          Length = 193

 Score =  267 bits (682), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 143/192 (74%), Positives = 159/192 (82%), Gaps = 8/192 (4%)

Query: 1   MGLTTVNQKIISGQS--------SCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWART 52
           MGLT  N  +++ Q            +   DA F+ ++ E++ KGF+VTS D L+TWART
Sbjct: 1   MGLTGTNTTLVAPQPKGILDPRTGKPVGSDDAFFNDLNGELSDKGFIVTSADALITWART 60

Query: 53  GSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRR 112
           GSLMWMTFGLACCAVEMM  SMPRYD ERFG APRASPRQSDVMIVAGTLTNKMA ALR+
Sbjct: 61  GSLMWMTFGLACCAVEMMHISMPRYDAERFGIAPRASPRQSDVMIVAGTLTNKMAPALRK 120

Query: 113 VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILL 172
           VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR+VPVDIYVPGCPPTAEAL+YGILL
Sbjct: 121 VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRVVPVDIYVPGCPPTAEALLYGILL 180

Query: 173 LQKKIRRVGNVK 184
           LQKKIRR G ++
Sbjct: 181 LQKKIRRTGTIE 192


>gi|227821618|ref|YP_002825588.1| NADH dehydrogenase subunit B [Sinorhizobium fredii NGR234]
 gi|227340617|gb|ACP24835.1| NADH dehydrogenase I chain B [Sinorhizobium fredii NGR234]
          Length = 192

 Score =  266 bits (679), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 141/182 (77%), Positives = 156/182 (85%)

Query: 3   LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62
           +    + II   +   +   DA F  I++E+  KGFLVTS D+L+ WARTGSLMWMTFGL
Sbjct: 10  VAPQPKGIIDPATGKPIGSNDAFFGEINNELADKGFLVTSTDELINWARTGSLMWMTFGL 69

Query: 63  ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122
           ACCAVEMMQ SMPRYD ERFGFAPRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRY
Sbjct: 70  ACCAVEMMQMSMPRYDAERFGFAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRY 129

Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
           VISMGSCANGGGYYHYSYSVVRGCDR+VPVDIYVPGCPPTAEAL+YG+LLLQKKIRR G 
Sbjct: 130 VISMGSCANGGGYYHYSYSVVRGCDRVVPVDIYVPGCPPTAEALLYGVLLLQKKIRRTGT 189

Query: 183 VK 184
           ++
Sbjct: 190 IE 191


>gi|86357237|ref|YP_469129.1| NADH dehydrogenase subunit B [Rhizobium etli CFN 42]
 gi|218673424|ref|ZP_03523093.1| NADH dehydrogenase subunit B [Rhizobium etli GR56]
 gi|123512314|sp|Q2K9T4|NUOB1_RHIEC RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName:
           Full=NADH dehydrogenase I subunit B 1; AltName:
           Full=NDH-1 subunit B 1
 gi|86281339|gb|ABC90402.1| NADH-ubiquinone oxidoreductase chain B protein [Rhizobium etli CFN
           42]
          Length = 194

 Score =  266 bits (679), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 144/193 (74%), Positives = 162/193 (83%), Gaps = 9/193 (4%)

Query: 1   MGLTTVN---------QKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWAR 51
           MG+T V+         + II   +   +   DA F  I++E+  KGFLVTS D+L+ WAR
Sbjct: 1   MGVTPVSNQPLVAQQPKGIIDPSTGKPIGSNDAFFGEINNELADKGFLVTSTDELINWAR 60

Query: 52  TGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALR 111
           TGSLMWMTFGLACCAVEMMQ SMPRYD+ERFGFAPRASPRQSDVMIVAGTLTNKMA ALR
Sbjct: 61  TGSLMWMTFGLACCAVEMMQLSMPRYDVERFGFAPRASPRQSDVMIVAGTLTNKMAPALR 120

Query: 112 RVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171
           +VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR+VP+DIYVPGCPPTAEAL+YG+L
Sbjct: 121 KVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRVVPIDIYVPGCPPTAEALLYGVL 180

Query: 172 LLQKKIRRVGNVK 184
           LLQKKIRR G ++
Sbjct: 181 LLQKKIRRTGTIE 193


>gi|190891286|ref|YP_001977828.1| NADH-ubiquinone oxidoreductase, chain B [Rhizobium etli CIAT 652]
 gi|238065013|sp|B3PVZ8|NUOB1_RHIE6 RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName:
           Full=NADH dehydrogenase I subunit B 1; AltName:
           Full=NDH-1 subunit B 1
 gi|190696565|gb|ACE90650.1| NADH-ubiquinone oxidoreductase protein, chain B [Rhizobium etli
           CIAT 652]
          Length = 194

 Score =  265 bits (678), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 144/193 (74%), Positives = 162/193 (83%), Gaps = 9/193 (4%)

Query: 1   MGLTTVN---------QKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWAR 51
           MG+T V+         + II   +   +   DA F  I++E+  KGFLVTS D+L+ WAR
Sbjct: 1   MGVTPVSNEPLVAQQPKGIIDPSTGKPIGSNDAFFGEINNELADKGFLVTSTDELINWAR 60

Query: 52  TGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALR 111
           TGSLMWMTFGLACCAVEMMQ SMPRYD+ERFGFAPRASPRQSDVMIVAGTLTNKMA ALR
Sbjct: 61  TGSLMWMTFGLACCAVEMMQLSMPRYDVERFGFAPRASPRQSDVMIVAGTLTNKMAPALR 120

Query: 112 RVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171
           +VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR+VP+DIYVPGCPPTAEAL+YG+L
Sbjct: 121 KVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRVVPIDIYVPGCPPTAEALLYGVL 180

Query: 172 LLQKKIRRVGNVK 184
           LLQKKIRR G ++
Sbjct: 181 LLQKKIRRTGTIE 193


>gi|327188488|gb|EGE55702.1| NADH dehydrogenase subunit B [Rhizobium etli CNPAF512]
          Length = 201

 Score =  265 bits (678), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 144/193 (74%), Positives = 162/193 (83%), Gaps = 9/193 (4%)

Query: 1   MGLTTVN---------QKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWAR 51
           MG+T V+         + II   +   +   DA F  I++E+  KGFLVTS D+L+ WAR
Sbjct: 8   MGVTPVSNQPLVAQQPKGIIDPSTGKPIGSNDAFFGEINNELADKGFLVTSTDELINWAR 67

Query: 52  TGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALR 111
           TGSLMWMTFGLACCAVEMMQ SMPRYD+ERFGFAPRASPRQSDVMIVAGTLTNKMA ALR
Sbjct: 68  TGSLMWMTFGLACCAVEMMQLSMPRYDVERFGFAPRASPRQSDVMIVAGTLTNKMAPALR 127

Query: 112 RVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171
           +VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR+VP+DIYVPGCPPTAEAL+YG+L
Sbjct: 128 KVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRVVPIDIYVPGCPPTAEALLYGVL 187

Query: 172 LLQKKIRRVGNVK 184
           LLQKKIRR G ++
Sbjct: 188 LLQKKIRRTGTIE 200


>gi|15965018|ref|NP_385371.1| NADH dehydrogenase subunit B [Sinorhizobium meliloti 1021]
 gi|307301090|ref|ZP_07580859.1| NADH-quinone oxidoreductase, B subunit [Sinorhizobium meliloti
           BL225C]
 gi|307317824|ref|ZP_07597262.1| NADH-quinone oxidoreductase, B subunit [Sinorhizobium meliloti
           AK83]
 gi|7387950|sp|O68853|NUOB1_RHIME RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName:
           Full=NADH dehydrogenase I subunit B 1; AltName:
           Full=NDH-1 subunit B 1
 gi|5650735|emb|CAB51621.1| nuoB1 [Sinorhizobium meliloti]
 gi|15074197|emb|CAC45844.1| NADH-ubiqionone oxidoreductase subunit K transmembrane protein
           [Sinorhizobium meliloti 1021]
 gi|306896586|gb|EFN27334.1| NADH-quinone oxidoreductase, B subunit [Sinorhizobium meliloti
           AK83]
 gi|306904045|gb|EFN34631.1| NADH-quinone oxidoreductase, B subunit [Sinorhizobium meliloti
           BL225C]
          Length = 192

 Score =  265 bits (678), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 140/182 (76%), Positives = 156/182 (85%)

Query: 3   LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62
           +    + I+   +   +   DA F  I++E+  KGFLVTS D+L+ WARTGSLMWMTFGL
Sbjct: 10  VAPQPKGILDPATGKPIGSNDAFFGEINNELADKGFLVTSTDELINWARTGSLMWMTFGL 69

Query: 63  ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122
           ACCAVEMMQ SMPRYD ERFGFAPRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRY
Sbjct: 70  ACCAVEMMQMSMPRYDAERFGFAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRY 129

Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
           VISMGSCANGGGYYHYSYSVVRGCDR+VPVDIYVPGCPPTAEAL+YG+LLLQKKIRR G 
Sbjct: 130 VISMGSCANGGGYYHYSYSVVRGCDRVVPVDIYVPGCPPTAEALLYGVLLLQKKIRRTGT 189

Query: 183 VK 184
           ++
Sbjct: 190 IE 191


>gi|326538542|gb|ADZ86757.1| NADH-quinone oxidoreductase, B subunit [Brucella melitensis M5-90]
          Length = 191

 Score =  264 bits (676), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 138/182 (75%), Positives = 156/182 (85%)

Query: 3   LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62
           +    + I+  ++   +   DA F+ ++ E++ KGF+VTS D L+TWARTGSLMWMTFGL
Sbjct: 9   VAPQPKGILDPRTGKPVGSDDAFFNDLNGELSDKGFIVTSADALITWARTGSLMWMTFGL 68

Query: 63  ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122
           ACCAVEMM  SMPRYD ERFG APRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRY
Sbjct: 69  ACCAVEMMHISMPRYDAERFGIAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRY 128

Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
           VISMGSCANGGGYYHYSYSVVRGCDR+VPVDIYVPGCPPTAEAL+YGILLLQKKIRR G 
Sbjct: 129 VISMGSCANGGGYYHYSYSVVRGCDRVVPVDIYVPGCPPTAEALLYGILLLQKKIRRTGT 188

Query: 183 VK 184
           ++
Sbjct: 189 IE 190


>gi|217979050|ref|YP_002363197.1| NADH-quinone oxidoreductase, B subunit [Methylocella silvestris
           BL2]
 gi|238065173|sp|B8EIL8|NUOB_METSB RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|217504426|gb|ACK51835.1| NADH-quinone oxidoreductase, B subunit [Methylocella silvestris
           BL2]
          Length = 187

 Score =  264 bits (675), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 144/186 (77%), Positives = 160/186 (86%), Gaps = 2/186 (1%)

Query: 1   MGLTTVNQK--IISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWM 58
           MGLT   Q+  +I+  +   L   D  F  I+ ++  KGFLVTS D+L+ WARTGSLMWM
Sbjct: 1   MGLTPAPQEGLVINPATDRPLAANDPYFLSINDKLADKGFLVTSTDELINWARTGSLMWM 60

Query: 59  TFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMP 118
           TFGLACCAVEMMQASMPRYD+ERFGFAPR SPRQSDVMIVAGTLTNKMA ALR+VYDQMP
Sbjct: 61  TFGLACCAVEMMQASMPRYDVERFGFAPRGSPRQSDVMIVAGTLTNKMAPALRKVYDQMP 120

Query: 119 EPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           EPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP+AEAL+YGILLLQ+KIR
Sbjct: 121 EPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPSAEALLYGILLLQRKIR 180

Query: 179 RVGNVK 184
           R G ++
Sbjct: 181 RTGTIE 186


>gi|209548863|ref|YP_002280780.1| NADH dehydrogenase subunit B [Rhizobium leguminosarum bv. trifolii
           WSM2304]
 gi|238065201|sp|B5ZYL3|NUOB_RHILW RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|209534619|gb|ACI54554.1| NADH-quinone oxidoreductase, B subunit [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 194

 Score =  264 bits (675), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 141/182 (77%), Positives = 157/182 (86%)

Query: 3   LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62
           +    + II   +   +   DA F  I++E+  KGFLVTS D+L+ WARTGSLMWMTFGL
Sbjct: 12  VAQQPKGIIDPSTGKPIGSNDAFFGEINNELADKGFLVTSTDELINWARTGSLMWMTFGL 71

Query: 63  ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122
           ACCAVEMMQ SMPRYD+ERFGFAPRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRY
Sbjct: 72  ACCAVEMMQLSMPRYDVERFGFAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRY 131

Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
           VISMGSCANGGGYYHYSYSVVRGCDRIVP+DIYVPGCPPTAEAL+YG+LLLQKKIRR G 
Sbjct: 132 VISMGSCANGGGYYHYSYSVVRGCDRIVPIDIYVPGCPPTAEALLYGVLLLQKKIRRTGT 191

Query: 183 VK 184
           ++
Sbjct: 192 IE 193


>gi|163759542|ref|ZP_02166627.1| NADH dehydrogenase beta subunit [Hoeflea phototrophica DFL-43]
 gi|162283139|gb|EDQ33425.1| NADH dehydrogenase beta subunit [Hoeflea phototrophica DFL-43]
          Length = 191

 Score =  264 bits (674), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 138/182 (75%), Positives = 157/182 (86%)

Query: 3   LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62
           +    + II   +   + + DA F  +++E+  KGFLVTS D+L+ W+RTGSLMWMTFGL
Sbjct: 9   VAPAAKGIIDPNTGKPVGQDDAFFGEVNNELADKGFLVTSTDELINWSRTGSLMWMTFGL 68

Query: 63  ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122
           ACCAVEMMQ SMPRYD ERFGFAPRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRY
Sbjct: 69  ACCAVEMMQMSMPRYDAERFGFAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRY 128

Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
           VISMGSCANGGGYYHYSYSVVRGCDR+VPVDIYVPGCPPTAEAL+YG+LLLQKK+RR G 
Sbjct: 129 VISMGSCANGGGYYHYSYSVVRGCDRVVPVDIYVPGCPPTAEALLYGVLLLQKKMRRTGT 188

Query: 183 VK 184
           ++
Sbjct: 189 IE 190


>gi|300023456|ref|YP_003756067.1| NADH-quinone oxidoreductase subunit beta [Hyphomicrobium
           denitrificans ATCC 51888]
 gi|299525277|gb|ADJ23746.1| NADH-quinone oxidoreductase, B subunit [Hyphomicrobium
           denitrificans ATCC 51888]
          Length = 198

 Score =  264 bits (674), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 145/197 (73%), Positives = 162/197 (82%), Gaps = 13/197 (6%)

Query: 1   MGLTTVNQKII-------------SGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLV 47
           MG+   N   I             SG ++  +   D  F+ IS+E+  KGFLVT+VD L+
Sbjct: 1   MGVIRTNDGQIIFDRALDKAREGVSGAATSIIRPDDQFFTGISNELADKGFLVTTVDDLI 60

Query: 48  TWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMA 107
            WARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMA
Sbjct: 61  NWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMA 120

Query: 108 SALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALI 167
            ALR+VYDQMPEPRYVISMGSCANGGGYYHYSY+VVRGCDR+VPVD+YVPGCPPTAEAL+
Sbjct: 121 PALRKVYDQMPEPRYVISMGSCANGGGYYHYSYAVVRGCDRVVPVDVYVPGCPPTAEALV 180

Query: 168 YGILLLQKKIRRVGNVK 184
           YGILLLQ+KIRR G ++
Sbjct: 181 YGILLLQRKIRRTGTIE 197


>gi|218457950|ref|ZP_03498041.1| NADH dehydrogenase subunit B [Rhizobium etli Kim 5]
          Length = 185

 Score =  263 bits (673), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 140/179 (78%), Positives = 156/179 (87%)

Query: 3   LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62
           +   ++ II   +   +   DA F  I++E+  KGFLVTS D+L+ WARTGSLMWMTFGL
Sbjct: 7   VARQSKGIIDPSTGKPIGSNDAFFGEINNELADKGFLVTSTDELINWARTGSLMWMTFGL 66

Query: 63  ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122
           ACCAVEMMQ SMPRYD+ERFGFAPRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRY
Sbjct: 67  ACCAVEMMQLSMPRYDVERFGFAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRY 126

Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
           VISMGSCANGGGYYHYSYSVVRGCDR+VP+DIYVPGCPPTAEAL+YG+LLLQKKIRR G
Sbjct: 127 VISMGSCANGGGYYHYSYSVVRGCDRVVPIDIYVPGCPPTAEALLYGVLLLQKKIRRTG 185


>gi|118590038|ref|ZP_01547442.1| NADH dehydrogenase subunit B [Stappia aggregata IAM 12614]
 gi|118437535|gb|EAV44172.1| NADH dehydrogenase subunit B [Stappia aggregata IAM 12614]
          Length = 192

 Score =  263 bits (673), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 145/191 (75%), Positives = 159/191 (83%), Gaps = 7/191 (3%)

Query: 1   MGLTTVN-------QKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTG 53
           MGLTT         Q II   +   +   DA F  +++E+  KGFLVTS D L+ WARTG
Sbjct: 1   MGLTTTEPLVAPQPQGIIDPNTGKPVGADDAFFLEVNNELADKGFLVTSTDNLIQWARTG 60

Query: 54  SLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRV 113
           SLMWMTFGLACCAVEMMQ SMPRYD ERFGFAPRASPRQSDVMIVAGTLTNKMA ALR+V
Sbjct: 61  SLMWMTFGLACCAVEMMQMSMPRYDAERFGFAPRASPRQSDVMIVAGTLTNKMAPALRKV 120

Query: 114 YDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLL 173
           YDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR+VPVDIYVPGCPPTAEAL+YG+L+L
Sbjct: 121 YDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRVVPVDIYVPGCPPTAEALLYGVLML 180

Query: 174 QKKIRRVGNVK 184
           QKKIRR G ++
Sbjct: 181 QKKIRRTGTIE 191


>gi|144899466|emb|CAM76330.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 186

 Score =  263 bits (672), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 126/186 (67%), Positives = 149/186 (80%), Gaps = 5/186 (2%)

Query: 1   MGLTTVNQKIISGQSSCSLEK---VDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMW 57
           MG+T  N  +++   +  L +    D+    ++ E+  KGF++ +VD+LV WARTGSL  
Sbjct: 1   MGVT--NSGLVTPAHAAPLPQGAAQDSVLKLVTDELEDKGFVLANVDKLVNWARTGSLWP 58

Query: 58  MTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQM 117
           MTFGLACCAVEM+ A   RYD++RFG   R SPRQSDVMIVAGTLTNKMA ALRRVYDQM
Sbjct: 59  MTFGLACCAVEMIHAGCSRYDMDRFGVVFRPSPRQSDVMIVAGTLTNKMAPALRRVYDQM 118

Query: 118 PEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
            EPR+VISMGSCANGGGYYHYSYSVVRGCDR+VPVD+YVPGCPPTAEAL+YGIL LQKKI
Sbjct: 119 AEPRWVISMGSCANGGGYYHYSYSVVRGCDRVVPVDVYVPGCPPTAEALLYGILQLQKKI 178

Query: 178 RRVGNV 183
           RR G++
Sbjct: 179 RRTGSI 184


>gi|150396112|ref|YP_001326579.1| NADH dehydrogenase subunit B [Sinorhizobium medicae WSM419]
 gi|238065217|sp|A6U7W4|NUOB_SINMW RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|150027627|gb|ABR59744.1| NADH-quinone oxidoreductase, B subunit [Sinorhizobium medicae
           WSM419]
          Length = 192

 Score =  262 bits (671), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 141/182 (77%), Positives = 157/182 (86%)

Query: 3   LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62
           +    + I+   +   +   DA F  I++E+  KGFLVTS D+L+TWARTGSLMWMTFGL
Sbjct: 10  VAPQPKGILDPATGKPIGSNDAFFGEINNELADKGFLVTSTDELITWARTGSLMWMTFGL 69

Query: 63  ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122
           ACCAVEMMQ SMPRYD ERFGFAPRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRY
Sbjct: 70  ACCAVEMMQMSMPRYDAERFGFAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRY 129

Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
           VISMGSCANGGGYYHYSYSVVRGCDR+VPVDIYVPGCPPTAEAL+YG+LLLQKKIRR G 
Sbjct: 130 VISMGSCANGGGYYHYSYSVVRGCDRVVPVDIYVPGCPPTAEALLYGVLLLQKKIRRTGT 189

Query: 183 VK 184
           ++
Sbjct: 190 IE 191


>gi|110633377|ref|YP_673585.1| NADH dehydrogenase subunit B [Mesorhizobium sp. BNC1]
 gi|122966123|sp|Q11JK5|NUOB_MESSB RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|110284361|gb|ABG62420.1| NADH dehydrogenase subunit B [Chelativorans sp. BNC1]
          Length = 190

 Score =  262 bits (671), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 139/182 (76%), Positives = 154/182 (84%)

Query: 3   LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62
           +   ++ II   +   +   D  +  I+ E++ KGFLVTS + L+TWARTGSLMWMTFGL
Sbjct: 8   VAPRSRGIIDPNTGNPVGANDPFYGAINEELSDKGFLVTSSEALITWARTGSLMWMTFGL 67

Query: 63  ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122
           ACCAVEMM  SMPRYD ERFG APRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRY
Sbjct: 68  ACCAVEMMHTSMPRYDAERFGIAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRY 127

Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
           VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGILLLQKKIRR G 
Sbjct: 128 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILLLQKKIRRTGT 187

Query: 183 VK 184
           ++
Sbjct: 188 IE 189


>gi|116251467|ref|YP_767305.1| NADH dehydrogenase subunit B [Rhizobium leguminosarum bv. viciae
           3841]
 gi|238065200|sp|Q1MIL4|NUOB_RHIL3 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|115256115|emb|CAK07196.1| putative NADH-quinone oxidoreductase subunit B [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 194

 Score =  262 bits (670), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 140/182 (76%), Positives = 156/182 (85%)

Query: 3   LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62
           +    + II   +   +   D  F  I++E+  KGFLVTS D+L+ WARTGSLMWMTFGL
Sbjct: 12  VAQQPKGIIDPSTGKPIGSNDPFFGEINNELADKGFLVTSTDELINWARTGSLMWMTFGL 71

Query: 63  ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122
           ACCAVEMMQ SMPRYD+ERFGFAPRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRY
Sbjct: 72  ACCAVEMMQLSMPRYDVERFGFAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRY 131

Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
           VISMGSCANGGGYYHYSYSVVRGCDRIVP+DIYVPGCPPTAEAL+YG+LLLQKKIRR G 
Sbjct: 132 VISMGSCANGGGYYHYSYSVVRGCDRIVPIDIYVPGCPPTAEALLYGVLLLQKKIRRTGT 191

Query: 183 VK 184
           ++
Sbjct: 192 IE 193


>gi|222085576|ref|YP_002544106.1| NADH-ubiquinone oxidoreductase chain B protein [Agrobacterium
           radiobacter K84]
 gi|238065070|sp|B9JD43|NUOB_AGRRK RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|221723024|gb|ACM26180.1| NADH-ubiquinone oxidoreductase chain B protein [Agrobacterium
           radiobacter K84]
          Length = 193

 Score =  262 bits (670), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 139/182 (76%), Positives = 156/182 (85%)

Query: 3   LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62
           +    + II   +   +   D  F  I++E+  KGFLVTS D+L+ WARTGSLMWMTFGL
Sbjct: 11  VAPQPKGIIDPATGKPVGSNDPFFGEINNELADKGFLVTSTDELINWARTGSLMWMTFGL 70

Query: 63  ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122
           ACCAVEMMQ SMPRYD+ERFGFAPRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRY
Sbjct: 71  ACCAVEMMQVSMPRYDVERFGFAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRY 130

Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
           VISMGSCANGGGYYHYSYSVVRGCDRIVP+DIY+PGCPPTAEAL+YG+LLLQKKIRR G 
Sbjct: 131 VISMGSCANGGGYYHYSYSVVRGCDRIVPIDIYIPGCPPTAEALLYGVLLLQKKIRRTGT 190

Query: 183 VK 184
           ++
Sbjct: 191 IE 192


>gi|298291846|ref|YP_003693785.1| NADH-quinone oxidoreductase subunit beta [Starkeya novella DSM 506]
 gi|296928357|gb|ADH89166.1| NADH-quinone oxidoreductase, B subunit [Starkeya novella DSM 506]
          Length = 192

 Score =  262 bits (669), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 138/182 (75%), Positives = 156/182 (85%)

Query: 3   LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62
           +    + II   +   +   D  F  +++E+  KGFLVT+ D+L+ WARTGSLMWMTFGL
Sbjct: 10  VAPAARGIIDPNTGKPVGTTDPFFVEVNAELADKGFLVTATDELINWARTGSLMWMTFGL 69

Query: 63  ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122
           ACCAVEMMQ SMPRYD+ERFGFAPRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRY
Sbjct: 70  ACCAVEMMQTSMPRYDVERFGFAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRY 129

Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
           VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY+PGCPPTAEAL+YG+LLLQKKIRR G 
Sbjct: 130 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYIPGCPPTAEALLYGVLLLQKKIRRTGT 189

Query: 183 VK 184
           ++
Sbjct: 190 IE 191


>gi|13471406|ref|NP_102972.1| NADH dehydrogenase subunit B [Mesorhizobium loti MAFF303099]
 gi|14022148|dbj|BAB48758.1| NADH-ubiquinone dehydrogenase chain B 1 [Mesorhizobium loti
           MAFF303099]
          Length = 200

 Score =  262 bits (669), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 135/182 (74%), Positives = 154/182 (84%)

Query: 3   LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62
           +    + II   +   + + D  F  I++E+  KGFLVTS + L+TWAR+GSLM+MTFGL
Sbjct: 18  VAPKPKGIIDPNTGRPVGEDDPFFLEINNELADKGFLVTSTEALITWARSGSLMFMTFGL 77

Query: 63  ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122
           ACCAVEM+  SMPRYD ERFG APRASPRQSD+MIVAGTLTNKMA ALR+VYDQMPEPRY
Sbjct: 78  ACCAVEMIHTSMPRYDSERFGVAPRASPRQSDIMIVAGTLTNKMAPALRKVYDQMPEPRY 137

Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
           VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP+AEAL+YGILLLQKKIRR G 
Sbjct: 138 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPSAEALLYGILLLQKKIRRTGT 197

Query: 183 VK 184
           ++
Sbjct: 198 IE 199


>gi|241204087|ref|YP_002975183.1| NADH dehydrogenase subunit B [Rhizobium leguminosarum bv. trifolii
           WSM1325]
 gi|240857977|gb|ACS55644.1| NADH-quinone oxidoreductase, B subunit [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 194

 Score =  262 bits (669), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 140/182 (76%), Positives = 156/182 (85%)

Query: 3   LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62
           +    + II   +   +   D  F  I++E+  KGFLVTS D+L+ WARTGSLMWMTFGL
Sbjct: 12  VAQQPKGIIDPSTGKPVGSNDPFFGEINNELADKGFLVTSTDELINWARTGSLMWMTFGL 71

Query: 63  ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122
           ACCAVEMMQ SMPRYD+ERFGFAPRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRY
Sbjct: 72  ACCAVEMMQLSMPRYDVERFGFAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRY 131

Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
           VISMGSCANGGGYYHYSYSVVRGCDRIVP+DIYVPGCPPTAEAL+YG+LLLQKKIRR G 
Sbjct: 132 VISMGSCANGGGYYHYSYSVVRGCDRIVPIDIYVPGCPPTAEALLYGVLLLQKKIRRTGT 191

Query: 183 VK 184
           ++
Sbjct: 192 IE 193


>gi|254503578|ref|ZP_05115729.1| NADH-quinone oxidoreductase, B subunit subfamily [Labrenzia
           alexandrii DFL-11]
 gi|222439649|gb|EEE46328.1| NADH-quinone oxidoreductase, B subunit subfamily [Labrenzia
           alexandrii DFL-11]
          Length = 199

 Score =  262 bits (669), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 143/191 (74%), Positives = 157/191 (82%), Gaps = 7/191 (3%)

Query: 1   MGLTTVN-------QKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTG 53
           MGLTT         + II   +   +   D  F  ++ E+  KGFLVTS D L+ WARTG
Sbjct: 8   MGLTTAKPLIAEQPKGIIDPNTGKPVGADDPFFLEVNDELADKGFLVTSTDNLIQWARTG 67

Query: 54  SLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRV 113
           SLMWMTFGLACCAVEMMQ SMPRYD ERFGFAPRASPRQSDVMIVAGTLTNKMA ALR+V
Sbjct: 68  SLMWMTFGLACCAVEMMQMSMPRYDAERFGFAPRASPRQSDVMIVAGTLTNKMAPALRKV 127

Query: 114 YDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLL 173
           YDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR+VPVDIYVPGCPPTAEAL+YG+L+L
Sbjct: 128 YDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRVVPVDIYVPGCPPTAEALLYGVLML 187

Query: 174 QKKIRRVGNVK 184
           QKKIRR G ++
Sbjct: 188 QKKIRRTGTIE 198


>gi|260462231|ref|ZP_05810475.1| NADH-quinone oxidoreductase, B subunit [Mesorhizobium opportunistum
           WSM2075]
 gi|259032091|gb|EEW33358.1| NADH-quinone oxidoreductase, B subunit [Mesorhizobium opportunistum
           WSM2075]
          Length = 193

 Score =  261 bits (668), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 134/182 (73%), Positives = 154/182 (84%)

Query: 3   LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62
           +    + II   +   + + D  F  I++E+  KGFLVTS + L+TWAR+GSLM+MTFGL
Sbjct: 11  VAPKPKGIIDPNTGKPVGQDDPFFLEINNELADKGFLVTSTEALITWARSGSLMFMTFGL 70

Query: 63  ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122
           ACCAVEM+  SMPRYD ERFG APRASPRQSD+MIVAGTLTNKMA ALR+VYDQMPEPRY
Sbjct: 71  ACCAVEMIHTSMPRYDSERFGVAPRASPRQSDIMIVAGTLTNKMAPALRKVYDQMPEPRY 130

Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
           VISMGSCANGGGYYHYSYSVVRGCDR+VPVDIYVPGCPP+AEAL+YGILLLQKKIRR G 
Sbjct: 131 VISMGSCANGGGYYHYSYSVVRGCDRVVPVDIYVPGCPPSAEALLYGILLLQKKIRRTGT 190

Query: 183 VK 184
           ++
Sbjct: 191 IE 192


>gi|304391399|ref|ZP_07373341.1| NADH-quinone oxidoreductase subunit b 1 [Ahrensia sp. R2A130]
 gi|303295628|gb|EFL89986.1| NADH-quinone oxidoreductase subunit b 1 [Ahrensia sp. R2A130]
          Length = 191

 Score =  261 bits (668), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 134/182 (73%), Positives = 154/182 (84%)

Query: 3   LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62
           +    + ++   +   + + D  F  I++E+  KGF+VT+ D L+ W+RTGSLMWMTFGL
Sbjct: 9   IAPTPKGVLDPATGKPVGQNDPFFGEINNELADKGFIVTTTDDLINWSRTGSLMWMTFGL 68

Query: 63  ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122
           ACCAVEMMQ SMPRYD ERFG APRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRY
Sbjct: 69  ACCAVEMMQMSMPRYDSERFGIAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRY 128

Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
           VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP+AEAL+YG+LLLQKKIRR G 
Sbjct: 129 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPSAEALLYGVLLLQKKIRRTGT 188

Query: 183 VK 184
           ++
Sbjct: 189 IE 190


>gi|319782982|ref|YP_004142458.1| NADH-quinone oxidoreductase, subunit beta [Mesorhizobium ciceri
           biovar biserrulae WSM1271]
 gi|218528069|sp|Q98KQ6|NUOB_RHILO RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|317168870|gb|ADV12408.1| NADH-quinone oxidoreductase, B subunit [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 193

 Score =  261 bits (668), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 135/182 (74%), Positives = 154/182 (84%)

Query: 3   LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62
           +    + II   +   + + D  F  I++E+  KGFLVTS + L+TWAR+GSLM+MTFGL
Sbjct: 11  VAPKPKGIIDPNTGRPVGEDDPFFLEINNELADKGFLVTSTEALITWARSGSLMFMTFGL 70

Query: 63  ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122
           ACCAVEM+  SMPRYD ERFG APRASPRQSD+MIVAGTLTNKMA ALR+VYDQMPEPRY
Sbjct: 71  ACCAVEMIHTSMPRYDSERFGVAPRASPRQSDIMIVAGTLTNKMAPALRKVYDQMPEPRY 130

Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
           VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP+AEAL+YGILLLQKKIRR G 
Sbjct: 131 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPSAEALLYGILLLQKKIRRTGT 190

Query: 183 VK 184
           ++
Sbjct: 191 IE 192


>gi|254469713|ref|ZP_05083118.1| NADH-ubiquinone oxidoreductase chain b protein [Pseudovibrio sp.
           JE062]
 gi|211961548|gb|EEA96743.1| NADH-ubiquinone oxidoreductase chain b protein [Pseudovibrio sp.
           JE062]
          Length = 194

 Score =  261 bits (667), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 137/182 (75%), Positives = 156/182 (85%)

Query: 3   LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62
           ++   + II   +   + + D  F  +++E++ KGFLVTS + L+ WARTGSLMWMTFGL
Sbjct: 12  VSQAPKGIIDPNTGRPVGENDPFFMNVNNELSDKGFLVTSSESLIQWARTGSLMWMTFGL 71

Query: 63  ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122
           ACCAVEMMQ SMPRYD ERFGFAPR SPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRY
Sbjct: 72  ACCAVEMMQMSMPRYDAERFGFAPRGSPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRY 131

Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
           VISMGSCANGGGYYHYSYSVVRGCDR+VPVDIYVPGCPPTAEAL+YG+LLLQKKIRR G 
Sbjct: 132 VISMGSCANGGGYYHYSYSVVRGCDRVVPVDIYVPGCPPTAEALLYGVLLLQKKIRRTGT 191

Query: 183 VK 184
           ++
Sbjct: 192 IE 193


>gi|170748477|ref|YP_001754737.1| NADH-quinone oxidoreductase, B subunit [Methylobacterium
           radiotolerans JCM 2831]
 gi|238065171|sp|B1LUN6|NUOB_METRJ RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|170654999|gb|ACB24054.1| NADH-quinone oxidoreductase, B subunit [Methylobacterium
           radiotolerans JCM 2831]
          Length = 195

 Score =  261 bits (666), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 137/183 (74%), Positives = 153/183 (83%)

Query: 2   GLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFG 61
            +    + II   +   +   D  F  IS E+  +GFL+T+ D+L+ WARTGSLMWMTFG
Sbjct: 12  AIAPQPKGIIDPNTGRPIGADDPTFLSISDELADRGFLLTTTDELINWARTGSLMWMTFG 71

Query: 62  LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPR 121
           LACCAVEMMQ SMPRYD ERFGFAPR SPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPR
Sbjct: 72  LACCAVEMMQMSMPRYDCERFGFAPRGSPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPR 131

Query: 122 YVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
           YVISMGSCANGGGYYHYSYSVVRGCDR+VPVDIYVPGCPPTAEAL+YG+LLLQKKIRR G
Sbjct: 132 YVISMGSCANGGGYYHYSYSVVRGCDRVVPVDIYVPGCPPTAEALLYGVLLLQKKIRRTG 191

Query: 182 NVK 184
            ++
Sbjct: 192 TIE 194


>gi|77463071|ref|YP_352575.1| NADH dehydrogenase subunit B [Rhodobacter sphaeroides 2.4.1]
 gi|221638927|ref|YP_002525189.1| NADH dehydrogenase subunit B [Rhodobacter sphaeroides KD131]
 gi|332557944|ref|ZP_08412266.1| NADH dehydrogenase subunit B [Rhodobacter sphaeroides WS8N]
 gi|123592237|sp|Q3J3G0|NUOB1_RHOS4 RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName:
           Full=NADH dehydrogenase I subunit B 1; AltName:
           Full=NDH-1 subunit B 1
 gi|238065016|sp|B9KQW1|NUOB1_RHOSK RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName:
           Full=NADH dehydrogenase I subunit B 1; AltName:
           Full=NDH-1 subunit B 1
 gi|77387489|gb|ABA78674.1| NADH dehydrogenase-ubiquinone oxidoreductase, chain B [Rhodobacter
           sphaeroides 2.4.1]
 gi|221159708|gb|ACM00688.1| NADH dehydrogenase I, B subunit [Rhodobacter sphaeroides KD131]
 gi|332275656|gb|EGJ20971.1| NADH dehydrogenase subunit B [Rhodobacter sphaeroides WS8N]
          Length = 174

 Score =  261 bits (666), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 131/161 (81%), Positives = 143/161 (88%)

Query: 23  DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82
           D D   ++ E+  KGFL+T+ + L+ WARTGSL WMTFGLACCAVEMM  SMPRYD+ERF
Sbjct: 12  DYDTQSLNRELQDKGFLLTTTEDLINWARTGSLHWMTFGLACCAVEMMHTSMPRYDVERF 71

Query: 83  GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142
           G APRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSV
Sbjct: 72  GVAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSV 131

Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           VRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQ+KIRR G +
Sbjct: 132 VRGCDRIVPVDIYVPGCPPTAEALLYGILQLQRKIRRTGTI 172


>gi|154248551|ref|YP_001419509.1| NADH-quinone oxidoreductase, B subunit [Xanthobacter autotrophicus
           Py2]
 gi|238065245|sp|A7IPA6|NUOB_XANP2 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|154162636|gb|ABS69852.1| NADH-quinone oxidoreductase, B subunit [Xanthobacter autotrophicus
           Py2]
          Length = 194

 Score =  261 bits (666), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 138/182 (75%), Positives = 157/182 (86%)

Query: 3   LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62
           +    Q I+   +   +   D  F  I+SE+  KGF++T+ D L+TWARTGSLMWMTFGL
Sbjct: 12  IAQAPQGIVDPSTGRPVGADDPFFKEINSELADKGFILTTADDLITWARTGSLMWMTFGL 71

Query: 63  ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122
           ACCAVEMMQ SMPRYD+ERFGFAPRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRY
Sbjct: 72  ACCAVEMMQVSMPRYDVERFGFAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRY 131

Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
           VISMGSCANGGGYYH+SY+VVRGCDRIVPVDIYVPGCPPTAEAL+YG+LLLQKKIRR+G 
Sbjct: 132 VISMGSCANGGGYYHFSYAVVRGCDRIVPVDIYVPGCPPTAEALLYGVLLLQKKIRRIGT 191

Query: 183 VK 184
           ++
Sbjct: 192 IE 193


>gi|296536155|ref|ZP_06898283.1| NADH dehydrogenase (ubiquinone) subunit B [Roseomonas cervicalis
           ATCC 49957]
 gi|296263526|gb|EFH10023.1| NADH dehydrogenase (ubiquinone) subunit B [Roseomonas cervicalis
           ATCC 49957]
          Length = 184

 Score =  260 bits (664), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 127/181 (70%), Positives = 147/181 (81%)

Query: 3   LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62
           ++   Q   + Q+     + DA    +S EI  KGF+V ++D++V WARTGSL  MTFGL
Sbjct: 1   MSANEQLAWNSQALPPGAEQDAVIKGVSGEIEDKGFIVANLDKVVNWARTGSLWPMTFGL 60

Query: 63  ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122
           ACCAV M+ A MPRYDL+RFG  PR SPRQSDVMIVAGTLTNKMA ALR+VYDQM EPR+
Sbjct: 61  ACCAVPMIHAYMPRYDLDRFGVIPRGSPRQSDVMIVAGTLTNKMAPALRKVYDQMAEPRW 120

Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
           VISMGSCANGGGYYHYSYSVVRGCDR+VPVD+YVPGCPPTAEAL+YGIL LQKKIRR G+
Sbjct: 121 VISMGSCANGGGYYHYSYSVVRGCDRVVPVDVYVPGCPPTAEALVYGILQLQKKIRRTGS 180

Query: 183 V 183
           +
Sbjct: 181 I 181


>gi|154253664|ref|YP_001414488.1| NADH-quinone oxidoreductase subunit B [Parvibaculum lavamentivorans
           DS-1]
 gi|238065187|sp|A7HY48|NUOB_PARL1 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|154157614|gb|ABS64831.1| NADH-quinone oxidoreductase, B subunit [Parvibaculum
           lavamentivorans DS-1]
          Length = 191

 Score =  260 bits (664), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 138/189 (73%), Positives = 157/189 (83%), Gaps = 6/189 (3%)

Query: 1   MGLTTVNQ------KIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGS 54
           MG+T  ++       ++   +S    + DA F + + ++  KGF++T+VD L+ W+RTGS
Sbjct: 1   MGVTNPDKVISNTPGVVDPATSVPAWQDDAFFRQATDQLADKGFVLTTVDDLINWSRTGS 60

Query: 55  LMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVY 114
           LMWMTFGLACCAVEMMQ SMPRYD ERFG APRASPRQSDVMIVAGTLTNKMA ALR+VY
Sbjct: 61  LMWMTFGLACCAVEMMQTSMPRYDAERFGVAPRASPRQSDVMIVAGTLTNKMAPALRKVY 120

Query: 115 DQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQ 174
           DQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQ
Sbjct: 121 DQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILALQ 180

Query: 175 KKIRRVGNV 183
           KKIRR G +
Sbjct: 181 KKIRRTGTL 189


>gi|126461943|ref|YP_001043057.1| NADH dehydrogenase subunit B [Rhodobacter sphaeroides ATCC 17029]
 gi|218528014|sp|A3PIW9|NUOB1_RHOS1 RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName:
           Full=NADH dehydrogenase I subunit B 1; AltName:
           Full=NDH-1 subunit B 1
 gi|126103607|gb|ABN76285.1| NADH-quinone oxidoreductase, B subunit [Rhodobacter sphaeroides
           ATCC 17029]
          Length = 176

 Score =  260 bits (664), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 131/161 (81%), Positives = 143/161 (88%)

Query: 23  DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82
           D D   ++ E+  KGFL+T+ + L+ WARTGSL WMTFGLACCAVEMM  SMPRYD+ERF
Sbjct: 14  DYDTQSLNRELQDKGFLLTTTEDLINWARTGSLHWMTFGLACCAVEMMHTSMPRYDVERF 73

Query: 83  GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142
           G APRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSV
Sbjct: 74  GVAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSV 133

Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           VRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQ+KIRR G +
Sbjct: 134 VRGCDRIVPVDIYVPGCPPTAEALLYGILQLQRKIRRTGTI 174


>gi|307942118|ref|ZP_07657469.1| NADH-quinone oxidoreductase subunit b 1 [Roseibium sp. TrichSKD4]
 gi|307774404|gb|EFO33614.1| NADH-quinone oxidoreductase subunit b 1 [Roseibium sp. TrichSKD4]
          Length = 193

 Score =  260 bits (664), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 141/192 (73%), Positives = 158/192 (82%), Gaps = 8/192 (4%)

Query: 1   MGLTTVNQK--------IISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWART 52
           MGLT  ++         II   +   +   D  F  ++ ++  KGFLVTS D L+ WART
Sbjct: 1   MGLTQTSKPLIAEQPKGIIDPNTGKPVGADDPFFLEVNDQLADKGFLVTSTDNLIQWART 60

Query: 53  GSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRR 112
           GSLMWMTFGLACCAVEMMQ SMPRYD+ERFGFAPRASPRQSDVMIVAGTLTNKMA ALR+
Sbjct: 61  GSLMWMTFGLACCAVEMMQMSMPRYDVERFGFAPRASPRQSDVMIVAGTLTNKMAPALRK 120

Query: 113 VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILL 172
           VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR+VPVDIYVPGCPPTAEAL+YG+L+
Sbjct: 121 VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRVVPVDIYVPGCPPTAEALLYGVLM 180

Query: 173 LQKKIRRVGNVK 184
           LQKKIRR G ++
Sbjct: 181 LQKKIRRTGTIE 192


>gi|158423292|ref|YP_001524584.1| NADH dehydrogenase subunit B [Azorhizobium caulinodans ORS 571]
 gi|218527974|sp|A8I3Y7|NUOB_AZOC5 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|158330181|dbj|BAF87666.1| NADH ubiqionone oxidoreductase chain B protein [Azorhizobium
           caulinodans ORS 571]
          Length = 192

 Score =  259 bits (663), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 138/182 (75%), Positives = 158/182 (86%)

Query: 3   LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62
           ++   + II   +   +   D  +  I++E+  KGFLVT+VD L+TWARTGSLMWMTFGL
Sbjct: 10  VSEAPKGIIDPSTGRPILSDDPFYKEINAELADKGFLVTTVDDLITWARTGSLMWMTFGL 69

Query: 63  ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122
           ACCAVEMMQ SMPRYD+ERFGFAPRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRY
Sbjct: 70  ACCAVEMMQVSMPRYDVERFGFAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRY 129

Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
           VISMGSCANGGGYYHYSY+VVRGCDR+VPVDIYVPGCPPTAEAL+YG+LLLQ+KIRR G 
Sbjct: 130 VISMGSCANGGGYYHYSYAVVRGCDRVVPVDIYVPGCPPTAEALLYGVLLLQRKIRRTGT 189

Query: 183 VK 184
           ++
Sbjct: 190 IE 191


>gi|49474178|ref|YP_032220.1| NADH dehydrogenase subunit B [Bartonella quintana str. Toulouse]
 gi|81647090|sp|Q6FZZ0|NUOB_BARQU RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|49239682|emb|CAF26057.1| NADH dehydrogenase I, B subunit [Bartonella quintana str. Toulouse]
          Length = 193

 Score =  259 bits (663), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 139/184 (75%), Positives = 158/184 (85%)

Query: 1   MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTF 60
           M +   ++ II   +   +   D  F  I++E++ KGFLVTS D L+TWARTGSLMWM+F
Sbjct: 9   MVVAPKSKGIIDPNTGKLIGSDDRFFHDINAELSDKGFLVTSADALITWARTGSLMWMSF 68

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           GLACCA+EMMQ SMP YD ERFG+APRASPRQSDVM+VAGTLTNKMA ALR+VYDQMPEP
Sbjct: 69  GLACCAIEMMQCSMPHYDNERFGYAPRASPRQSDVMVVAGTLTNKMAPALRKVYDQMPEP 128

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGILLLQKKIRR 
Sbjct: 129 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILLLQKKIRRT 188

Query: 181 GNVK 184
           G+++
Sbjct: 189 GSIE 192


>gi|319405697|emb|CBI79320.1| NADH dehydrogenase I, B subunit [Bartonella sp. AR 15-3]
          Length = 193

 Score =  259 bits (662), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 138/182 (75%), Positives = 159/182 (87%)

Query: 3   LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62
           +   ++ II   ++  ++  +  FS I++E+  KGFLVTS D L+TWARTGSLMWM+FGL
Sbjct: 11  VAPKSKGIIDPNTAELVDSNNKFFSDINTELGDKGFLVTSADALITWARTGSLMWMSFGL 70

Query: 63  ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122
           ACCAVEMMQ SMP YD ERFG+APRASPRQSDVM+VAGTLTNKMA ALR+VYDQMPEPRY
Sbjct: 71  ACCAVEMMQCSMPHYDNERFGYAPRASPRQSDVMVVAGTLTNKMAPALRKVYDQMPEPRY 130

Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
           VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY+PGCPPTAEAL+YGILLLQKKIRR G+
Sbjct: 131 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYIPGCPPTAEALLYGILLLQKKIRRTGS 190

Query: 183 VK 184
           ++
Sbjct: 191 IE 192


>gi|319898883|ref|YP_004158976.1| NADH dehydrogenase I, B subunit [Bartonella clarridgeiae 73]
 gi|319402847|emb|CBI76398.1| NADH dehydrogenase I, B subunit [Bartonella clarridgeiae 73]
          Length = 193

 Score =  259 bits (661), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 141/182 (77%), Positives = 157/182 (86%)

Query: 3   LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62
           +T   + II   +   +   D  FS I++E+  KGFLVTS D L+TWARTGSLMWM+FGL
Sbjct: 11  VTPKPKGIIDPNTGELVGSNDKFFSDINTELGDKGFLVTSADALITWARTGSLMWMSFGL 70

Query: 63  ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122
           ACCAVEMMQ SMP YD ERFG+APRASPRQSDVM+VAGTLTNKMA ALR+VYDQMPEPRY
Sbjct: 71  ACCAVEMMQCSMPHYDNERFGYAPRASPRQSDVMVVAGTLTNKMAPALRKVYDQMPEPRY 130

Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
           VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGILLLQKKIRR G+
Sbjct: 131 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILLLQKKIRRTGS 190

Query: 183 VK 184
           ++
Sbjct: 191 IE 192


>gi|121602032|ref|YP_989071.1| NADH dehydrogenase subunit B [Bartonella bacilliformis KC583]
 gi|238055234|sp|A1USW8|NUOB_BARBK RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|120614209|gb|ABM44810.1| NADH dehydrogenase (quinone), B subunit [Bartonella bacilliformis
           KC583]
          Length = 193

 Score =  259 bits (661), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 140/182 (76%), Positives = 158/182 (86%)

Query: 3   LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62
           +    + II   +S  +   D  F  +++E++ KGFLVTSVD L+TWARTGSLMWM+FGL
Sbjct: 11  VAPQAKGIIDPNTSKLIGANDQFFQDMNAELSDKGFLVTSVDSLITWARTGSLMWMSFGL 70

Query: 63  ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122
           ACCAVEMMQ SMP YD ERFG+APRASPRQSDVM+VAGTLTNKMA ALR+VYDQMPEPRY
Sbjct: 71  ACCAVEMMQCSMPHYDNERFGYAPRASPRQSDVMVVAGTLTNKMAPALRKVYDQMPEPRY 130

Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
           VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGILLLQKKIRR G+
Sbjct: 131 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILLLQKKIRRTGS 190

Query: 183 VK 184
           ++
Sbjct: 191 IE 192


>gi|323138146|ref|ZP_08073219.1| NADH-quinone oxidoreductase, B subunit [Methylocystis sp. ATCC
           49242]
 gi|322396608|gb|EFX99136.1| NADH-quinone oxidoreductase, B subunit [Methylocystis sp. ATCC
           49242]
          Length = 194

 Score =  258 bits (660), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 131/182 (71%), Positives = 155/182 (85%)

Query: 3   LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62
           +    + +I  ++   +   D  F +I+ E+  KGF VT+ D ++ WARTGSLMWMTFGL
Sbjct: 12  VAPQPKGLIDPRTGKPVGSDDPFFLQINEELADKGFFVTATDDVINWARTGSLMWMTFGL 71

Query: 63  ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122
           ACCAVEM+QA+MPRYDLERFGFAPRASPRQSD +I+AGTLTNKMA ALR+VYDQMPEPRY
Sbjct: 72  ACCAVEMIQAAMPRYDLERFGFAPRASPRQSDCIIIAGTLTNKMAPALRKVYDQMPEPRY 131

Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
           VISMGSCANGGGYYHYSYSVVRGCDRI+PVD+YVPGCPP+AEAL+YG+LLLQKKIRR G 
Sbjct: 132 VISMGSCANGGGYYHYSYSVVRGCDRIIPVDVYVPGCPPSAEALVYGMLLLQKKIRRTGT 191

Query: 183 VK 184
           ++
Sbjct: 192 IE 193


>gi|188580284|ref|YP_001923729.1| NADH dehydrogenase subunit B [Methylobacterium populi BJ001]
 gi|238065170|sp|B1ZA45|NUOB_METPB RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|179343782|gb|ACB79194.1| NADH-quinone oxidoreductase, B subunit [Methylobacterium populi
           BJ001]
          Length = 195

 Score =  258 bits (660), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 138/182 (75%), Positives = 154/182 (84%)

Query: 3   LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62
           +    + II   +   +   D  F  ISSE+  +GFLVTS D+L+ WARTGSLMWMTFGL
Sbjct: 13  IAPAPKGIIDPATGRPIGANDPTFLSISSELADRGFLVTSADELINWARTGSLMWMTFGL 72

Query: 63  ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122
           ACCAVEMMQ SMPRYD ERFGFAPR SPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRY
Sbjct: 73  ACCAVEMMQMSMPRYDCERFGFAPRGSPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRY 132

Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
           VISMGSCANGGGYYHYSYSVVRGCDR+VPVDIYVPGCPP+AEAL+YG+LLLQ+KIRR G 
Sbjct: 133 VISMGSCANGGGYYHYSYSVVRGCDRVVPVDIYVPGCPPSAEALLYGVLLLQRKIRRTGT 192

Query: 183 VK 184
           ++
Sbjct: 193 IE 194


>gi|319407266|emb|CBI80905.1| NADH dehydrogenase I, B subunit [Bartonella sp. 1-1C]
          Length = 193

 Score =  258 bits (660), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 138/182 (75%), Positives = 157/182 (86%)

Query: 3   LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62
           +    + II   +   +   D  F+ I++E+  KGFLVTSVD L+TWARTGSLMWM+FGL
Sbjct: 11  VAPKAKGIIDPNTGKLVGSNDKFFNDINAELGDKGFLVTSVDSLITWARTGSLMWMSFGL 70

Query: 63  ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122
           ACCAVEM+Q SMP YD ERFG+APRASPRQSDVM+VAGTLTNKMA ALR+VYDQMPEPRY
Sbjct: 71  ACCAVEMIQCSMPHYDNERFGYAPRASPRQSDVMVVAGTLTNKMAPALRKVYDQMPEPRY 130

Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
           VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY+PGCPPTAEAL+YGILLLQKKIRR G+
Sbjct: 131 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYIPGCPPTAEALLYGILLLQKKIRRTGS 190

Query: 183 VK 184
           ++
Sbjct: 191 IE 192


>gi|319404258|emb|CBI77851.1| NADH dehydrogenase I, B subunit [Bartonella rochalimae ATCC
           BAA-1498]
          Length = 193

 Score =  258 bits (659), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 139/182 (76%), Positives = 157/182 (86%)

Query: 3   LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62
           +    + II   +   +   D  FS I++E+  KGFLVTSVD L+TWARTGSLMWM+FGL
Sbjct: 11  VAPKAKGIIDPNTGKLVGSNDKFFSDINAELGDKGFLVTSVDALITWARTGSLMWMSFGL 70

Query: 63  ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122
           ACCAVEM+Q SMP YD ERFG+APRASPRQSDVM+VAGTLTNKMA ALR+VYDQMPEPRY
Sbjct: 71  ACCAVEMIQCSMPHYDNERFGYAPRASPRQSDVMVVAGTLTNKMAPALRKVYDQMPEPRY 130

Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
           VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY+PGCPPTAEAL+YGILLLQKKIRR G+
Sbjct: 131 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYIPGCPPTAEALLYGILLLQKKIRRTGS 190

Query: 183 VK 184
           ++
Sbjct: 191 IE 192


>gi|23006634|ref|ZP_00048864.1| COG0377: NADH:ubiquinone oxidoreductase 20 kD subunit and related
           Fe-S oxidoreductases [Magnetospirillum magnetotacticum
           MS-1]
          Length = 195

 Score =  257 bits (658), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 136/182 (74%), Positives = 154/182 (84%)

Query: 3   LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62
           +    + II   +   +   D  F  I+ E+  +GFLVTS D+L+ WARTGSLMWMTFGL
Sbjct: 13  IAPAPKGIIDPATGRPIGANDPTFLSINDELADRGFLVTSADELINWARTGSLMWMTFGL 72

Query: 63  ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122
           ACCAVEMMQ SMPRYD ERFGFAPR SPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRY
Sbjct: 73  ACCAVEMMQMSMPRYDCERFGFAPRGSPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRY 132

Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
           VISMGSCANGGGYYHYSYSVVRGCDR+VPVDIYVPGCPP+AEAL+YG+LLLQ+KIRR+G 
Sbjct: 133 VISMGSCANGGGYYHYSYSVVRGCDRVVPVDIYVPGCPPSAEALLYGVLLLQRKIRRLGT 192

Query: 183 VK 184
           ++
Sbjct: 193 IE 194


>gi|157827450|ref|YP_001496514.1| NADH dehydrogenase subunit B [Rickettsia bellii OSU 85-389]
 gi|218528017|sp|A8GX77|NUOB_RICB8 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|157802754|gb|ABV79477.1| NADH dehydrogenase subunit B [Rickettsia bellii OSU 85-389]
          Length = 174

 Score =  257 bits (658), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 113/158 (71%), Positives = 137/158 (86%)

Query: 27  SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP 86
             +++E++++GFL+T VD ++ WAR+ SL  MTFGLACCAVEMMQA+  RYD++RFG   
Sbjct: 10  ELLNNELSNRGFLLTKVDDVIGWARSNSLWPMTFGLACCAVEMMQAAASRYDMDRFGMLF 69

Query: 87  RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGC 146
           R SPRQSD+MIVAGTLTNKMA ALR+VYDQM EP++V+SMGSCANGGGYYH+SYSVVRGC
Sbjct: 70  RPSPRQSDLMIVAGTLTNKMAPALRKVYDQMAEPKWVLSMGSCANGGGYYHFSYSVVRGC 129

Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           DRIVPVD+YVPGCPPTAEALIYG++ LQKKI+R    K
Sbjct: 130 DRIVPVDVYVPGCPPTAEALIYGLMQLQKKIKRTTGFK 167


>gi|92117743|ref|YP_577472.1| NADH dehydrogenase subunit B [Nitrobacter hamburgensis X14]
 gi|123387068|sp|Q1QL85|NUOB_NITHX RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|91800637|gb|ABE63012.1| NADH dehydrogenase subunit B [Nitrobacter hamburgensis X14]
          Length = 202

 Score =  257 bits (658), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 137/182 (75%), Positives = 155/182 (85%)

Query: 3   LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62
           +T     I+  ++   +   D  F  ++ E++ KGF V + D L+TWARTGSLMWMTFGL
Sbjct: 20  VTPAAASILDPRTGRPVGAGDPYFLEVNHELSDKGFFVAATDDLITWARTGSLMWMTFGL 79

Query: 63  ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122
           ACCAVEMMQ SMPRYD+ERFGFAPRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRY
Sbjct: 80  ACCAVEMMQVSMPRYDVERFGFAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRY 139

Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
           VISMGSCANGGGYYHYSYSVVRGCDRIVP+D+YVPGCPPTAEAL+YGILLLQKKIRR G 
Sbjct: 140 VISMGSCANGGGYYHYSYSVVRGCDRIVPIDVYVPGCPPTAEALLYGILLLQKKIRRTGT 199

Query: 183 VK 184
           ++
Sbjct: 200 IE 201


>gi|163850516|ref|YP_001638559.1| NADH-quinone oxidoreductase, B subunit [Methylobacterium extorquens
           PA1]
 gi|218529213|ref|YP_002420029.1| NADH dehydrogenase subunit B [Methylobacterium chloromethanicum
           CM4]
 gi|240137581|ref|YP_002962052.1| NADH-quinone oxidoreductase chain B (NADH dehydrogenase I, chain B)
           [Methylobacterium extorquens AM1]
 gi|254560052|ref|YP_003067147.1| NADH-quinone oxidoreductase subunit B [Methylobacterium extorquens
           DM4]
 gi|238065167|sp|A9W1N2|NUOB_METEP RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|254767795|sp|B7KQ65|NUOB_METC4 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|163662121|gb|ABY29488.1| NADH-quinone oxidoreductase, B subunit [Methylobacterium extorquens
           PA1]
 gi|218521516|gb|ACK82101.1| NADH-quinone oxidoreductase, B subunit [Methylobacterium
           chloromethanicum CM4]
 gi|240007549|gb|ACS38775.1| NADH-quinone oxidoreductase chain B (NADH dehydrogenase I, chain B)
           [Methylobacterium extorquens AM1]
 gi|254267330|emb|CAX23162.1| NADH-quinone oxidoreductase chain B (NADH dehydrogenase I, chain B)
           [Methylobacterium extorquens DM4]
          Length = 195

 Score =  257 bits (657), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 136/182 (74%), Positives = 154/182 (84%)

Query: 3   LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62
           +    + II   +   +   D  F  I+ E+  +GFLVTS D+L+ WARTGSLMWMTFGL
Sbjct: 13  IAPAPKGIIDPATGRPIGANDPTFLSINDELADRGFLVTSADELINWARTGSLMWMTFGL 72

Query: 63  ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122
           ACCAVEMMQ SMPRYD ERFGFAPR SPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRY
Sbjct: 73  ACCAVEMMQMSMPRYDCERFGFAPRGSPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRY 132

Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
           VISMGSCANGGGYYHYSYSVVRGCDR+VPVDIYVPGCPP+AEAL+YG+LLLQ+KIRR+G 
Sbjct: 133 VISMGSCANGGGYYHYSYSVVRGCDRVVPVDIYVPGCPPSAEALLYGVLLLQRKIRRIGT 192

Query: 183 VK 184
           ++
Sbjct: 193 IE 194


>gi|49475657|ref|YP_033698.1| NADH dehydrogenase subunit B [Bartonella henselae str. Houston-1]
 gi|81647866|sp|Q6G389|NUOB_BARHE RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|49238464|emb|CAF27692.1| NADH dehydrogenase I, B subunit [Bartonella henselae str.
           Houston-1]
          Length = 193

 Score =  257 bits (657), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 141/192 (73%), Positives = 160/192 (83%), Gaps = 8/192 (4%)

Query: 1   MGLTTVN--------QKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWART 52
           MGL + N        + II   +   +   D  F  +++E++ KGFLVTS D L+TWART
Sbjct: 1   MGLISSNSTITAPKSKGIIDPNTGELIGSDDRFFCEVNAELSEKGFLVTSADALITWART 60

Query: 53  GSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRR 112
           GSLMWM+FGLACCA+EMMQ SMP YD ERFG+APRASPRQSDVM+VAGTLTNKMA ALR+
Sbjct: 61  GSLMWMSFGLACCAIEMMQCSMPHYDNERFGYAPRASPRQSDVMVVAGTLTNKMAPALRK 120

Query: 113 VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILL 172
           VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGILL
Sbjct: 121 VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILL 180

Query: 173 LQKKIRRVGNVK 184
           LQKKIRR G+++
Sbjct: 181 LQKKIRRTGSIE 192


>gi|15888598|ref|NP_354279.1| NADH dehydrogenase subunit B [Agrobacterium tumefaciens str. C58]
 gi|15156318|gb|AAK87064.1| NADH ubiqionone oxidoreductase chain B [Agrobacterium tumefaciens
           str. C58]
          Length = 201

 Score =  257 bits (657), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 138/183 (75%), Positives = 156/183 (85%), Gaps = 1/183 (0%)

Query: 3   LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62
           +    + II   +   +   DA F+ I+ E+  KGFLVTS D+L+TWARTGSLMWM FGL
Sbjct: 18  VAPQPKGIIDPATGKPVGSNDAYFTEINDELADKGFLVTSTDELITWARTGSLMWMQFGL 77

Query: 63  ACCAVE-MMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPR 121
           ACCAVE +MQAS PRYD+ERFG APRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPR
Sbjct: 78  ACCAVEGLMQASGPRYDMERFGVAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPR 137

Query: 122 YVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
           YVISMGSCANGGGYYHYSY+VVRGCDR+VPVDIYVPGCPPTAEAL+YG+LLLQKKIRR G
Sbjct: 138 YVISMGSCANGGGYYHYSYAVVRGCDRVVPVDIYVPGCPPTAEALLYGVLLLQKKIRRTG 197

Query: 182 NVK 184
            ++
Sbjct: 198 TIE 200


>gi|146278043|ref|YP_001168202.1| NADH dehydrogenase subunit B [Rhodobacter sphaeroides ATCC 17025]
 gi|218528015|sp|A4WU33|NUOB2_RHOS5 RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName:
           Full=NADH dehydrogenase I subunit B 2; AltName:
           Full=NDH-1 subunit B 2
 gi|145556284|gb|ABP70897.1| NADH-quinone oxidoreductase, B subunit [Rhodobacter sphaeroides
           ATCC 17025]
          Length = 174

 Score =  257 bits (657), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 130/161 (80%), Positives = 144/161 (89%)

Query: 23  DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82
           D D + ++ E+  KGFL+T+ + L+ WARTGSL WMTFGLACCAVEMM  SMPRYD+ERF
Sbjct: 12  DYDTAGLNRELQDKGFLLTTTEDLINWARTGSLHWMTFGLACCAVEMMHTSMPRYDVERF 71

Query: 83  GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142
           G APRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSV
Sbjct: 72  GVAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSV 131

Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           VRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQ++IRR G +
Sbjct: 132 VRGCDRIVPVDIYVPGCPPTAEALLYGILQLQRRIRRTGTI 172


>gi|220924006|ref|YP_002499308.1| NADH dehydrogenase subunit B [Methylobacterium nodulans ORS 2060]
 gi|238065169|sp|B8IUU7|NUOB_METNO RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|219948613|gb|ACL59005.1| NADH-quinone oxidoreductase, B subunit [Methylobacterium nodulans
           ORS 2060]
          Length = 197

 Score =  257 bits (657), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 137/183 (74%), Positives = 154/183 (84%)

Query: 2   GLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFG 61
            +    + II   +   +   D  F  I+ E+  +GFL+T+ D L+TWARTGSLMWMTFG
Sbjct: 14  AIAPQPKGIIDPATGLPVGATDPTFLSINDELADRGFLLTTADDLITWARTGSLMWMTFG 73

Query: 62  LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPR 121
           LACCAVEMMQ SMPRYD ERFGFAPRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPR
Sbjct: 74  LACCAVEMMQMSMPRYDAERFGFAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPR 133

Query: 122 YVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
           YVISMGSCANGGGYYHYSYSVVRGCDR+VPVDIYVPGCPP+AEAL+YG+LLLQKKIRR G
Sbjct: 134 YVISMGSCANGGGYYHYSYSVVRGCDRVVPVDIYVPGCPPSAEALLYGVLLLQKKIRRTG 193

Query: 182 NVK 184
            ++
Sbjct: 194 TIE 196


>gi|162148810|ref|YP_001603271.1| NADH dehydrogenase subunit B [Gluconacetobacter diazotrophicus PAl
           5]
 gi|209545442|ref|YP_002277671.1| NADH dehydrogenase subunit B [Gluconacetobacter diazotrophicus PAl
           5]
 gi|221272394|sp|A9HRU3|NUOB2_GLUDA RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName:
           Full=NADH dehydrogenase I subunit B 2; AltName:
           Full=NDH-1 subunit B 2
 gi|161787387|emb|CAP56982.1| NADH-quinone oxidoreductase chain B [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209533119|gb|ACI53056.1| NADH-quinone oxidoreductase, B subunit [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 191

 Score =  257 bits (657), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 128/167 (76%), Positives = 139/167 (83%)

Query: 17  CSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPR 76
               + DA    I+ EIT KGF+V S+D+LV W RTGSL  M+FGLACCAVEM+ A MPR
Sbjct: 22  PPGPEQDAVIKGITGEITEKGFVVASLDKLVNWGRTGSLWPMSFGLACCAVEMIHAYMPR 81

Query: 77  YDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY 136
           YDL+R G  PR SPRQSDVMIVAGTLTNKMA ALRRVYDQM EPR+VISMGSCANGGGYY
Sbjct: 82  YDLDRMGIIPRGSPRQSDVMIVAGTLTNKMAPALRRVYDQMAEPRWVISMGSCANGGGYY 141

Query: 137 HYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           HYSYSVVRGCDRIVPVD+YVPGCPPTAEALIYGI  LQKKIRR G +
Sbjct: 142 HYSYSVVRGCDRIVPVDVYVPGCPPTAEALIYGIFQLQKKIRRTGTI 188


>gi|325292633|ref|YP_004278497.1| NADH dehydrogenase I chain B [Agrobacterium sp. H13-3]
 gi|238065076|sp|A9CJB2|NUOB_AGRT5 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|325060486|gb|ADY64177.1| NADH dehydrogenase I chain B [Agrobacterium sp. H13-3]
          Length = 194

 Score =  257 bits (657), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 138/183 (75%), Positives = 156/183 (85%), Gaps = 1/183 (0%)

Query: 3   LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62
           +    + II   +   +   DA F+ I+ E+  KGFLVTS D+L+TWARTGSLMWM FGL
Sbjct: 11  VAPQPKGIIDPATGKPVGSNDAYFTEINDELADKGFLVTSTDELITWARTGSLMWMQFGL 70

Query: 63  ACCAVE-MMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPR 121
           ACCAVE +MQAS PRYD+ERFG APRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPR
Sbjct: 71  ACCAVEGLMQASGPRYDMERFGVAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPR 130

Query: 122 YVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
           YVISMGSCANGGGYYHYSY+VVRGCDR+VPVDIYVPGCPPTAEAL+YG+LLLQKKIRR G
Sbjct: 131 YVISMGSCANGGGYYHYSYAVVRGCDRVVPVDIYVPGCPPTAEALLYGVLLLQKKIRRTG 190

Query: 182 NVK 184
            ++
Sbjct: 191 TIE 193


>gi|170742512|ref|YP_001771167.1| NADH dehydrogenase subunit B [Methylobacterium sp. 4-46]
 gi|238065172|sp|B0ULK5|NUOB_METS4 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|168196786|gb|ACA18733.1| NADH-quinone oxidoreductase, B subunit [Methylobacterium sp. 4-46]
          Length = 195

 Score =  257 bits (657), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 136/183 (74%), Positives = 154/183 (84%)

Query: 2   GLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFG 61
            +    + I+   +   +   D  F  I+ E+  +GFL+T+ D L+TWARTGSLMWMTFG
Sbjct: 12  AIAPEPKGILDPATGLPIGATDPTFLSINDELADRGFLLTTADDLITWARTGSLMWMTFG 71

Query: 62  LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPR 121
           LACCAVEMMQ SMPRYD ERFGFAPRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPR
Sbjct: 72  LACCAVEMMQMSMPRYDAERFGFAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPR 131

Query: 122 YVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
           YVISMGSCANGGGYYHYSYSVVRGCDR+VPVDIYVPGCPP+AEAL+YG+LLLQKKIRR G
Sbjct: 132 YVISMGSCANGGGYYHYSYSVVRGCDRVVPVDIYVPGCPPSAEALLYGVLLLQKKIRRTG 191

Query: 182 NVK 184
            ++
Sbjct: 192 TIE 194


>gi|114327965|ref|YP_745122.1| NADH dehydrogenase subunit B [Granulibacter bethesdensis CGDNIH1]
 gi|122327073|sp|Q0BSK3|NUOB_GRABC RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|114316139|gb|ABI62199.1| NADH-quinone oxidoreductase chain B [Granulibacter bethesdensis
           CGDNIH1]
          Length = 194

 Score =  257 bits (657), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 129/180 (71%), Positives = 147/180 (81%)

Query: 4   TTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLA 63
           T     + + ++       +A    I+ E+  KGF+V ++D+LV WARTGSL  MTFGLA
Sbjct: 12  TADEAMLWNREALPPGPGQEAVLRGITGEMADKGFVVANLDKLVNWARTGSLWPMTFGLA 71

Query: 64  CCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYV 123
           CCAVEM+ A MPRYDL+RFG  PRASPRQSDVMIVAGTLTNKMA ALRRVYDQMPEPR+V
Sbjct: 72  CCAVEMIHAYMPRYDLDRFGVIPRASPRQSDVMIVAGTLTNKMAPALRRVYDQMPEPRWV 131

Query: 124 ISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           ISMGSCANGGGYYHYSYSVVRGCDRIVPVD+YVPGCPPTAEAL+YGI+ LQKKIRR G +
Sbjct: 132 ISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALVYGIMQLQKKIRRTGTI 191


>gi|75676078|ref|YP_318499.1| NADH dehydrogenase subunit B [Nitrobacter winogradskyi Nb-255]
 gi|123613264|sp|Q3SRE4|NUOB_NITWN RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|74420948|gb|ABA05147.1| NADH dehydrogenase subunit B [Nitrobacter winogradskyi Nb-255]
          Length = 207

 Score =  257 bits (657), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 139/177 (78%), Positives = 153/177 (86%)

Query: 8   QKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAV 67
             I+   +   +   D  F  ++ E++ KGF V + D L+TWARTGSLMWMTFGLACCAV
Sbjct: 30  TSILDPATGRPVGASDPYFLEVNHELSDKGFFVAAADDLITWARTGSLMWMTFGLACCAV 89

Query: 68  EMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMG 127
           EMMQ SMPRYD+ERFGFAPRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMG
Sbjct: 90  EMMQVSMPRYDVERFGFAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMG 149

Query: 128 SCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           SCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGILLLQKKIRRVG ++
Sbjct: 150 SCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILLLQKKIRRVGTIE 206


>gi|328543686|ref|YP_004303795.1| NADH-quinone oxidoreductase subunit B [polymorphum gilvum
           SL003B-26A1]
 gi|326413430|gb|ADZ70493.1| NADH-quinone oxidoreductase subunit B [Polymorphum gilvum
           SL003B-26A1]
          Length = 193

 Score =  257 bits (656), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 142/192 (73%), Positives = 157/192 (81%), Gaps = 8/192 (4%)

Query: 1   MGLTTVN--------QKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWART 52
           MGLTT          + II   +   +   D  F  ++ E+  KGFLVT+ D L+ WART
Sbjct: 1   MGLTTTKGPLVAPAPRGIIDPNTGKPVGANDPFFMGMNDELADKGFLVTTTDNLIQWART 60

Query: 53  GSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRR 112
           GSLMWMTFGLACCAVEMMQ SMPRYD ERFGFAPRASPRQSDVMIVAGTLTNKMA ALR+
Sbjct: 61  GSLMWMTFGLACCAVEMMQMSMPRYDAERFGFAPRASPRQSDVMIVAGTLTNKMAPALRK 120

Query: 113 VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILL 172
           VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR+VPVDIYVPGCPPTAEAL+YG+L+
Sbjct: 121 VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRVVPVDIYVPGCPPTAEALLYGVLM 180

Query: 173 LQKKIRRVGNVK 184
           LQKKIRR G ++
Sbjct: 181 LQKKIRRTGTIE 192


>gi|254456317|ref|ZP_05069746.1| NADH dehydrogenase i chain b [Candidatus Pelagibacter sp. HTCC7211]
 gi|207083319|gb|EDZ60745.1| NADH dehydrogenase i chain b [Candidatus Pelagibacter sp. HTCC7211]
          Length = 171

 Score =  257 bits (656), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 126/164 (76%), Positives = 146/164 (89%)

Query: 19  LEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78
           +++V  +F +++ + +  GF+ TS+D L+ W+R+GSL WMTFGLACCAVEMMQ +MPRYD
Sbjct: 5   IDQVPEEFKQLAEDFSKNGFITTSLDNLINWSRSGSLHWMTFGLACCAVEMMQTAMPRYD 64

Query: 79  LERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY 138
           LERFG APR SPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHY
Sbjct: 65  LERFGAAPRGSPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHY 124

Query: 139 SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
           SYSVVRGCDRIVPVD+YVPGCPP+AEAL+YGIL LQKKIR  G+
Sbjct: 125 SYSVVRGCDRIVPVDVYVPGCPPSAEALLYGILQLQKKIRNKGS 168


>gi|329889333|ref|ZP_08267676.1| NADH-quinone oxidoreductase subunit B [Brevundimonas diminuta ATCC
           11568]
 gi|328844634|gb|EGF94198.1| NADH-quinone oxidoreductase subunit B [Brevundimonas diminuta ATCC
           11568]
          Length = 192

 Score =  257 bits (656), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 129/191 (67%), Positives = 153/191 (80%), Gaps = 7/191 (3%)

Query: 1   MGLTTVNQKIISGQSSCSLEKV-------DADFSRISSEITHKGFLVTSVDQLVTWARTG 53
           M +   +  ++   S+             D  F  +++E+  +GFL TS+D ++TWARTG
Sbjct: 1   MAVIAPSSPLVPAGSAARSTVEGYDPKIHDKFFESVNTELGERGFLTTSLDDVITWARTG 60

Query: 54  SLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRV 113
           SLMWM+FGLACCAVEM+  SMPR+DLERFG APR SPRQSD+MIVAGTLTNKMA ALR+V
Sbjct: 61  SLMWMSFGLACCAVEMIHLSMPRFDLERFGTAPRGSPRQSDLMIVAGTLTNKMAPALRKV 120

Query: 114 YDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLL 173
           YDQMP+PRYVISMGSCANGGGYYHYSYSVVRGCDR+VPVD+YVPGCPPTAEAL+YGIL L
Sbjct: 121 YDQMPDPRYVISMGSCANGGGYYHYSYSVVRGCDRVVPVDVYVPGCPPTAEALLYGILQL 180

Query: 174 QKKIRRVGNVK 184
           QKKIRR G ++
Sbjct: 181 QKKIRRTGTIE 191


>gi|296116534|ref|ZP_06835144.1| NADH dehydrogenase subunit B [Gluconacetobacter hansenii ATCC
           23769]
 gi|295976746|gb|EFG83514.1| NADH dehydrogenase subunit B [Gluconacetobacter hansenii ATCC
           23769]
          Length = 192

 Score =  256 bits (655), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 126/167 (75%), Positives = 140/167 (83%)

Query: 17  CSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPR 76
               + DA    ++ EIT KGF+V ++D++V W RTGSL  M+FGLACCAVEM+ A MPR
Sbjct: 23  PPGPEQDAVIRGVTGEITEKGFVVANLDKIVNWGRTGSLWPMSFGLACCAVEMIHAYMPR 82

Query: 77  YDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY 136
           YDL+R G  PR SPRQSDVMIVAGTLTNKMA ALRRVYDQM EPR+VISMGSCANGGGYY
Sbjct: 83  YDLDRMGIIPRGSPRQSDVMIVAGTLTNKMAPALRRVYDQMAEPRWVISMGSCANGGGYY 142

Query: 137 HYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           HYSYSVVRGCDRIVPVD+YVPGCPPTAEALIYGIL LQKKIRR G +
Sbjct: 143 HYSYSVVRGCDRIVPVDVYVPGCPPTAEALIYGILQLQKKIRRTGTI 189


>gi|240850584|ref|YP_002971984.1| NADH dehydrogenase I subunit B [Bartonella grahamii as4aup]
 gi|240267707|gb|ACS51295.1| NADH dehydrogenase I subunit B [Bartonella grahamii as4aup]
          Length = 193

 Score =  256 bits (655), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 137/180 (76%), Positives = 155/180 (86%)

Query: 5   TVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLAC 64
              + II   +   +   D  F  +++E++ KGFLVTS D L+TWARTGSLMWM+FGLAC
Sbjct: 13  PKPKGIIDPNTGELIGSDDKFFRDLNAELSDKGFLVTSADALITWARTGSLMWMSFGLAC 72

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           CA+EMMQ SMP YD ERFG+APRASPRQSDVM+VAGTLTNKMA ALR+VYDQMPEPRYVI
Sbjct: 73  CAIEMMQCSMPHYDNERFGYAPRASPRQSDVMVVAGTLTNKMAPALRKVYDQMPEPRYVI 132

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGILLLQKKIRR G+++
Sbjct: 133 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILLLQKKIRRTGSIE 192


>gi|209885052|ref|YP_002288909.1| NADH-quinone oxidoreductase subunit b 1 [Oligotropha
           carboxidovorans OM5]
 gi|238065186|sp|B6JGW0|NUOB_OLICO RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|209873248|gb|ACI93044.1| NADH-quinone oxidoreductase subunit b 1 [Oligotropha
           carboxidovorans OM5]
          Length = 198

 Score =  256 bits (655), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 137/182 (75%), Positives = 156/182 (85%)

Query: 3   LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62
           ++     ++  ++   +   D  F  I+ E++ KGF V + D L+TWARTGSLMWMTFGL
Sbjct: 16  VSQPATGVLDPRTGQPVGADDRYFLEINHELSDKGFFVAAADDLITWARTGSLMWMTFGL 75

Query: 63  ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122
           ACCAVEMMQ SMPRYD+ERFGFAPRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRY
Sbjct: 76  ACCAVEMMQVSMPRYDVERFGFAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRY 135

Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
           VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG+LLLQKKIRR+G 
Sbjct: 136 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGVLLLQKKIRRIGT 195

Query: 183 VK 184
           ++
Sbjct: 196 IE 197


>gi|71083583|ref|YP_266302.1| NADH dehydrogenase subunit B [Candidatus Pelagibacter ubique
           HTCC1062]
 gi|91761996|ref|ZP_01263961.1| NADH dehydrogenase beta subunit [Candidatus Pelagibacter ubique
           HTCC1002]
 gi|123646646|sp|Q4FM90|NUOB_PELUB RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|71062696|gb|AAZ21699.1| NADH Dehydrogenase I Chain B [Candidatus Pelagibacter ubique
           HTCC1062]
 gi|91717798|gb|EAS84448.1| NADH dehydrogenase beta subunit [Candidatus Pelagibacter ubique
           HTCC1002]
          Length = 173

 Score =  256 bits (655), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 125/165 (75%), Positives = 145/165 (87%)

Query: 20  EKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDL 79
           +++  +F +++ + +  GF+ TS+D L+ W+R GSL WMTFGLACCAVEMMQ +MPRYDL
Sbjct: 8   KEIPEEFKKLAEDFSKNGFITTSLDNLINWSRAGSLHWMTFGLACCAVEMMQTAMPRYDL 67

Query: 80  ERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS 139
           ERFG APR SPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYS
Sbjct: 68  ERFGAAPRGSPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYS 127

Query: 140 YSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           YSVVRGCD+IVPVDIYVPGCPP+AEAL+YGIL LQKKIR  G+ +
Sbjct: 128 YSVVRGCDKIVPVDIYVPGCPPSAEALLYGILQLQKKIRNKGSFE 172


>gi|159043857|ref|YP_001532651.1| NADH dehydrogenase subunit B [Dinoroseobacter shibae DFL 12]
 gi|218527990|sp|A8LIT6|NUOB_DINSH RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|157911617|gb|ABV93050.1| NADH-quinone oxidoreductase [Dinoroseobacter shibae DFL 12]
          Length = 177

 Score =  256 bits (655), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 127/155 (81%), Positives = 141/155 (90%)

Query: 29  ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88
           +++E+  KGFL+TS + ++ WARTGSL WMTFGLACCAVEMM  SMPRYD ERFG APRA
Sbjct: 21  LNNELQDKGFLLTSTEDIINWARTGSLHWMTFGLACCAVEMMHTSMPRYDAERFGIAPRA 80

Query: 89  SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 148
           SPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR
Sbjct: 81  SPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 140

Query: 149 IVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           +VPVDIYVPGCPPTAEAL+YG+L LQ+KIRR G +
Sbjct: 141 VVPVDIYVPGCPPTAEALLYGLLQLQRKIRRTGTI 175


>gi|163868372|ref|YP_001609581.1| NADH dehydrogenase subunit B [Bartonella tribocorum CIP 105476]
 gi|238055237|sp|A9IUQ3|NUOB_BART1 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|161018028|emb|CAK01586.1| NADH dehydrogenase I, B subunit [Bartonella tribocorum CIP 105476]
          Length = 193

 Score =  256 bits (654), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 138/180 (76%), Positives = 155/180 (86%)

Query: 5   TVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLAC 64
              + II   +   +   D  F  I++E++ KGFLVTS D L+TWARTGSLMWM+FGLAC
Sbjct: 13  PKPKGIIDPNTGELIGSDDRFFRDINAELSDKGFLVTSADALITWARTGSLMWMSFGLAC 72

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           CA+EMMQ SMP YD ERFG+APRASPRQSDVM+VAGTLTNKMA ALR+VYDQMPEPRYVI
Sbjct: 73  CAIEMMQCSMPHYDNERFGYAPRASPRQSDVMVVAGTLTNKMAPALRKVYDQMPEPRYVI 132

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGILLLQKKIRR G+++
Sbjct: 133 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILLLQKKIRRTGSIE 192


>gi|260434181|ref|ZP_05788152.1| NADH-quinone oxidoreductase, b subunit [Silicibacter
           lacuscaerulensis ITI-1157]
 gi|260418009|gb|EEX11268.1| NADH-quinone oxidoreductase, b subunit [Silicibacter
           lacuscaerulensis ITI-1157]
          Length = 174

 Score =  256 bits (654), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 130/173 (75%), Positives = 150/173 (86%), Gaps = 1/173 (0%)

Query: 11  ISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMM 70
           ++G ++  ++K +     +++E+  KGFL+TS + ++ WARTGSL WMTFGLACCAVEMM
Sbjct: 1   MTGANTAGVDK-EVATQALNAELQDKGFLLTSTEDIINWARTGSLHWMTFGLACCAVEMM 59

Query: 71  QASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCA 130
             SMPRYD ERFG APRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCA
Sbjct: 60  HTSMPRYDAERFGIAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCA 119

Query: 131 NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG+L LQ+KIRR G +
Sbjct: 120 NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGLLQLQRKIRRTGTI 172


>gi|56697623|ref|YP_167992.1| NADH dehydrogenase subunit B [Ruegeria pomeroyi DSS-3]
 gi|56679360|gb|AAV96026.1| NADH dehydrogenase I, B subunit [Ruegeria pomeroyi DSS-3]
          Length = 184

 Score =  256 bits (654), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 130/174 (74%), Positives = 151/174 (86%), Gaps = 1/174 (0%)

Query: 10  IISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEM 69
           +++G ++  ++K +     +++E+  KGFL+TS + ++ WARTGSL WMTFGLACCAVEM
Sbjct: 10  VMTGANTAGVDK-EVATQALNAELQDKGFLLTSTEDIINWARTGSLHWMTFGLACCAVEM 68

Query: 70  MQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSC 129
           M  SMPRYD ERFG APRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSC
Sbjct: 69  MHTSMPRYDAERFGIAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSC 128

Query: 130 ANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           ANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG+L LQ+KIRR G +
Sbjct: 129 ANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGLLQLQRKIRRTGTI 182


>gi|85717029|ref|ZP_01047991.1| NADH dehydrogenase beta subunit [Nitrobacter sp. Nb-311A]
 gi|85696153|gb|EAQ34049.1| NADH dehydrogenase beta subunit [Nitrobacter sp. Nb-311A]
          Length = 200

 Score =  256 bits (654), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 139/180 (77%), Positives = 154/180 (85%)

Query: 5   TVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLAC 64
                I+   +  S+   D  F  ++ E++ KGF V + D L+TWARTGSLMWMTFGLAC
Sbjct: 20  PAGTSILDPGTGRSVGAGDPYFLEVNHELSDKGFFVAAADDLITWARTGSLMWMTFGLAC 79

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           CAVEMMQ SMPRYD+ERFGFAPRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVI
Sbjct: 80  CAVEMMQVSMPRYDVERFGFAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVI 139

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           SMGSCANGGGYYHYSYSVVRGCDRIVPVD+YVPGCPPTAEAL+YGILLLQKKIRRVG ++
Sbjct: 140 SMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALLYGILLLQKKIRRVGTIE 199


>gi|67458958|ref|YP_246582.1| NADH dehydrogenase subunit B [Rickettsia felis URRWXCal2]
 gi|75536604|sp|Q4UM06|NUOB_RICFE RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|67004491|gb|AAY61417.1| NADH dehydrogenase I chain B [Rickettsia felis URRWXCal2]
          Length = 174

 Score =  256 bits (654), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 113/158 (71%), Positives = 136/158 (86%)

Query: 27  SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP 86
             +++E++++GFL+T VD ++ WAR  SL  MTFGLACCAVEMMQA+  RYD++RFG   
Sbjct: 10  ELLNNELSNRGFLLTKVDDVIGWARANSLWPMTFGLACCAVEMMQAAASRYDMDRFGMLF 69

Query: 87  RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGC 146
           R SPRQSD+MIVAGTLTNKMA ALR+VYDQM EP++V+SMGSCANGGGYYH+SYSVVRGC
Sbjct: 70  RPSPRQSDLMIVAGTLTNKMAPALRKVYDQMAEPKWVLSMGSCANGGGYYHFSYSVVRGC 129

Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           DRIVPVD+YVPGCPPTAEALIYG++ LQKKI+R    K
Sbjct: 130 DRIVPVDVYVPGCPPTAEALIYGLMQLQKKIKRTTGFK 167


>gi|218528064|sp|Q5LPR4|NUOB_SILPO RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
          Length = 177

 Score =  256 bits (654), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 130/174 (74%), Positives = 151/174 (86%), Gaps = 1/174 (0%)

Query: 10  IISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEM 69
           +++G ++  ++K +     +++E+  KGFL+TS + ++ WARTGSL WMTFGLACCAVEM
Sbjct: 3   VMTGANTAGVDK-EVATQALNAELQDKGFLLTSTEDIINWARTGSLHWMTFGLACCAVEM 61

Query: 70  MQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSC 129
           M  SMPRYD ERFG APRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSC
Sbjct: 62  MHTSMPRYDAERFGIAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSC 121

Query: 130 ANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           ANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG+L LQ+KIRR G +
Sbjct: 122 ANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGLLQLQRKIRRTGTI 175


>gi|15892407|ref|NP_360121.1| NADH dehydrogenase subunit B [Rickettsia conorii str. Malish 7]
 gi|34580591|ref|ZP_00142071.1| NADH dehydrogenase I chain B [Rickettsia sibirica 246]
 gi|157828358|ref|YP_001494600.1| NADH dehydrogenase subunit B [Rickettsia rickettsii str. 'Sheila
           Smith']
 gi|165933066|ref|YP_001649855.1| NADH dehydrogenase subunit B [Rickettsia rickettsii str. Iowa]
 gi|238651035|ref|YP_002916892.1| NADH dehydrogenase subunit B [Rickettsia peacockii str. Rustic]
 gi|20139043|sp|Q92ID6|NUOB_RICCN RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|218528020|sp|B0BX73|NUOB_RICRO RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|218528021|sp|A8GRR7|NUOB_RICRS RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|259514688|sp|C4K2P3|NUOB_RICPU RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|15619558|gb|AAL03022.1| NADH dehydrogenase I chain B [Rickettsia conorii str. Malish 7]
 gi|28261976|gb|EAA25480.1| NADH dehydrogenase I chain B [Rickettsia sibirica 246]
 gi|157800839|gb|ABV76092.1| NADH dehydrogenase subunit B [Rickettsia rickettsii str. 'Sheila
           Smith']
 gi|165908153|gb|ABY72449.1| NADH-quinone oxidoreductase chain B [Rickettsia rickettsii str.
           Iowa]
 gi|238625133|gb|ACR47839.1| NADH dehydrogenase subunit B [Rickettsia peacockii str. Rustic]
          Length = 174

 Score =  256 bits (654), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 114/158 (72%), Positives = 136/158 (86%)

Query: 27  SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP 86
             +S+E++++GFL+T VD ++ WAR  SL  MTFGLACCAVEMMQA+  RYD++RFG   
Sbjct: 10  ELLSNELSNRGFLLTKVDDVIGWARANSLWPMTFGLACCAVEMMQAAASRYDMDRFGMLF 69

Query: 87  RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGC 146
           R SPRQSD+MIVAGTLTNKMA ALR+VYDQM EP++V+SMGSCANGGGYYH+SYSVVRGC
Sbjct: 70  RPSPRQSDLMIVAGTLTNKMAPALRKVYDQMAEPKWVLSMGSCANGGGYYHFSYSVVRGC 129

Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           DRIVPVD+YVPGCPPTAEALIYG++ LQKKI+R    K
Sbjct: 130 DRIVPVDVYVPGCPPTAEALIYGLMQLQKKIKRTTGFK 167


>gi|163738798|ref|ZP_02146212.1| NADH dehydrogenase subunit B [Phaeobacter gallaeciensis BS107]
 gi|163741491|ref|ZP_02148882.1| NADH dehydrogenase subunit B [Phaeobacter gallaeciensis 2.10]
 gi|161385225|gb|EDQ09603.1| NADH dehydrogenase subunit B [Phaeobacter gallaeciensis 2.10]
 gi|161388126|gb|EDQ12481.1| NADH dehydrogenase subunit B [Phaeobacter gallaeciensis BS107]
          Length = 174

 Score =  256 bits (654), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 127/173 (73%), Positives = 150/173 (86%), Gaps = 1/173 (0%)

Query: 11  ISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMM 70
           ++G ++  ++K +     +++E+  KGFL+TS + ++ WARTGSL WMTFGLACCAVEMM
Sbjct: 1   MTGANTAGVDK-EVVTQALNAELQDKGFLLTSAEDIINWARTGSLHWMTFGLACCAVEMM 59

Query: 71  QASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCA 130
             SMPRYD ERFG APRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCA
Sbjct: 60  HTSMPRYDAERFGIAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCA 119

Query: 131 NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           NGGGYYHYSYSVVRGCDR+VPVD+YVPGCPPTAEAL+YG++ LQ+KIRR G +
Sbjct: 120 NGGGYYHYSYSVVRGCDRVVPVDVYVPGCPPTAEALLYGLMQLQRKIRRTGTL 172


>gi|114764719|ref|ZP_01443904.1| NADH dehydrogenase beta subunit [Pelagibaca bermudensis HTCC2601]
 gi|114542919|gb|EAU45940.1| NADH dehydrogenase beta subunit [Roseovarius sp. HTCC2601]
          Length = 206

 Score =  256 bits (654), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 128/176 (72%), Positives = 148/176 (84%)

Query: 8   QKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAV 67
              ++  +  +    +     ++ E++ KGFL+TSVD ++ WARTGSL WMTFGLACCA+
Sbjct: 29  SSPVAYGTYRAGGDQEVATQALNRELSDKGFLLTSVDDVINWARTGSLHWMTFGLACCAI 88

Query: 68  EMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMG 127
           EMM  SMPRYDLERFG APRASPRQSD+MIVAGTLTNKMA ALR+VYDQMPEPRYVISMG
Sbjct: 89  EMMHTSMPRYDLERFGSAPRASPRQSDLMIVAGTLTNKMAPALRKVYDQMPEPRYVISMG 148

Query: 128 SCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           SCANGGGYYHYSYSVVRGCDRIVPVD+YVPGCPPTAEAL+YG++ LQKKIRR G +
Sbjct: 149 SCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALLYGLMALQKKIRRTGTI 204


>gi|299135032|ref|ZP_07028223.1| NADH-quinone oxidoreductase, B subunit [Afipia sp. 1NLS2]
 gi|298590009|gb|EFI50213.1| NADH-quinone oxidoreductase, B subunit [Afipia sp. 1NLS2]
          Length = 197

 Score =  256 bits (653), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 137/182 (75%), Positives = 155/182 (85%)

Query: 3   LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62
           ++     ++  ++   +   D  F  I+ E++ KGF V + D L+TWARTGSLMWMTFGL
Sbjct: 15  ISQPATGVLDPRTGQPVGADDRYFLEINHELSDKGFFVAAADDLITWARTGSLMWMTFGL 74

Query: 63  ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122
           ACCAVEMMQ SMPRYD+ERFGFAPRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRY
Sbjct: 75  ACCAVEMMQVSMPRYDVERFGFAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRY 134

Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
           VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG+LLLQKKIRR G 
Sbjct: 135 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGVLLLQKKIRRTGT 194

Query: 183 VK 184
           ++
Sbjct: 195 IE 196


>gi|229586623|ref|YP_002845124.1| NADH dehydrogenase subunit B [Rickettsia africae ESF-5]
 gi|259514686|sp|C3PN71|NUOB_RICAE RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|228021673|gb|ACP53381.1| NADH dehydrogenase I chain B [Rickettsia africae ESF-5]
          Length = 174

 Score =  256 bits (653), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 114/158 (72%), Positives = 136/158 (86%)

Query: 27  SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP 86
             +S+E++++GFL+T VD ++ WAR  SL  MTFGLACCAVEMMQA+  RYD++RFG   
Sbjct: 10  ELLSNELSNRGFLLTKVDDVIGWARANSLWPMTFGLACCAVEMMQAAASRYDMDRFGMLF 69

Query: 87  RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGC 146
           R SPRQSD+MIVAGTLTNKMA ALR+VYDQM EP++V+SMGSCANGGGYYH+SYSVVRGC
Sbjct: 70  RPSPRQSDLMIVAGTLTNKMAPALRKVYDQMTEPKWVLSMGSCANGGGYYHFSYSVVRGC 129

Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           DRIVPVD+YVPGCPPTAEALIYG++ LQKKI+R    K
Sbjct: 130 DRIVPVDVYVPGCPPTAEALIYGLMQLQKKIKRTTGFK 167


>gi|182679352|ref|YP_001833498.1| NADH-quinone oxidoreductase, B subunit [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|238055244|sp|B2IHW6|NUOB_BEII9 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|182635235|gb|ACB96009.1| NADH-quinone oxidoreductase, B subunit [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 180

 Score =  256 bits (653), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 140/184 (76%), Positives = 154/184 (83%), Gaps = 5/184 (2%)

Query: 1   MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTF 60
           MGL    Q ++    +      D  F  I+ ++  KGFLVTS D+L+ WARTGSLMWMTF
Sbjct: 1   MGLIATPQPVVGTPPAQ-----DNYFLSINDQLADKGFLVTSTDELINWARTGSLMWMTF 55

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           GLACCAVEMMQ SMPRYD ERFGFAPR SPRQSDVMIVAGTLTNKMA ALR+VYDQMPEP
Sbjct: 56  GLACCAVEMMQMSMPRYDCERFGFAPRGSPRQSDVMIVAGTLTNKMAPALRKVYDQMPEP 115

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP+AEAL+YG+LLLQKKIRR 
Sbjct: 116 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPSAEALLYGVLLLQKKIRRT 175

Query: 181 GNVK 184
           G ++
Sbjct: 176 GTIE 179


>gi|254486398|ref|ZP_05099603.1| NADH-quinone oxidoreductase chain b [Roseobacter sp. GAI101]
 gi|214043267|gb|EEB83905.1| NADH-quinone oxidoreductase chain b [Roseobacter sp. GAI101]
          Length = 178

 Score =  256 bits (653), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 130/161 (80%), Positives = 142/161 (88%)

Query: 23  DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82
           D     ++ E+  KGFL+TS + ++ WARTGSL WMTFGLACCAVEMM  SMPRYDLERF
Sbjct: 16  DVATQNLNKELQDKGFLLTSTEDIINWARTGSLHWMTFGLACCAVEMMHTSMPRYDLERF 75

Query: 83  GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142
           G APRASPRQSD+MIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSV
Sbjct: 76  GTAPRASPRQSDLMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSV 135

Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           VRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQ+KIRR G +
Sbjct: 136 VRGCDRIVPVDIYVPGCPPTAEALLYGILQLQRKIRRTGTI 176


>gi|91205212|ref|YP_537567.1| NADH dehydrogenase subunit B [Rickettsia bellii RML369-C]
 gi|122425872|sp|Q1RJI6|NUOB_RICBR RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|91068756|gb|ABE04478.1| NADH dehydrogenase I chain B [Rickettsia bellii RML369-C]
          Length = 174

 Score =  256 bits (653), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 112/158 (70%), Positives = 136/158 (86%)

Query: 27  SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP 86
             +++E++++G L+T VD ++ WAR+ SL  MTFGLACCAVEMMQA+  RYD++RFG   
Sbjct: 10  ELLNNELSNRGVLLTKVDDVIGWARSNSLWPMTFGLACCAVEMMQAAASRYDMDRFGMLF 69

Query: 87  RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGC 146
           R SPRQSD+MIVAGTLTNKMA ALR+VYDQM EP++V+SMGSCANGGGYYH+SYSVVRGC
Sbjct: 70  RPSPRQSDLMIVAGTLTNKMAPALRKVYDQMAEPKWVLSMGSCANGGGYYHFSYSVVRGC 129

Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           DRIVPVD+YVPGCPPTAEALIYG++ LQKKI+R    K
Sbjct: 130 DRIVPVDVYVPGCPPTAEALIYGLMQLQKKIKRTTGFK 167


>gi|126740377|ref|ZP_01756065.1| NADH dehydrogenase subunit B [Roseobacter sp. SK209-2-6]
 gi|126718513|gb|EBA15227.1| NADH dehydrogenase subunit B [Roseobacter sp. SK209-2-6]
          Length = 174

 Score =  256 bits (653), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 128/173 (73%), Positives = 150/173 (86%), Gaps = 1/173 (0%)

Query: 11  ISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMM 70
           ++G ++  ++K +     I++E+  KGFL+TS + ++ WARTGSL WMTFGLACCAVEMM
Sbjct: 1   MTGANTAGVDK-EVVTQAINAELQDKGFLLTSAEDIINWARTGSLHWMTFGLACCAVEMM 59

Query: 71  QASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCA 130
             SMPRYD ERFG APRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCA
Sbjct: 60  HTSMPRYDAERFGIAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCA 119

Query: 131 NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           NGGGYYHYSYSVVRGCDR+VPVD+YVPGCPPTAEAL+YG++ LQ+KIRR G +
Sbjct: 120 NGGGYYHYSYSVVRGCDRVVPVDVYVPGCPPTAEALLYGLMQLQRKIRRTGTL 172


>gi|27380029|ref|NP_771558.1| NADH dehydrogenase subunit B [Bradyrhizobium japonicum USDA 110]
 gi|81736772|sp|Q89KI7|NUOB_BRAJA RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|27353183|dbj|BAC50183.1| NADH ubiqionone oxidoreductase chain B [Bradyrhizobium japonicum
           USDA 110]
          Length = 202

 Score =  256 bits (653), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 138/182 (75%), Positives = 155/182 (85%)

Query: 3   LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62
           L    + I+   +   +   D  F  ++SE++ KGF V + D L+TWARTGSLMWMTFGL
Sbjct: 20  LAPAPKGILDPSTGKPVGANDPFFLEVNSELSDKGFFVAATDDLITWARTGSLMWMTFGL 79

Query: 63  ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122
           ACCAVEMMQ SMPRYD+ERFGFAPRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRY
Sbjct: 80  ACCAVEMMQVSMPRYDVERFGFAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRY 139

Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
           VISMGSCANGGGYYHYSYSVVRGCDRIVP+DIYVPGCPPTAEAL+YG+LLLQKKIRR G 
Sbjct: 140 VISMGSCANGGGYYHYSYSVVRGCDRIVPIDIYVPGCPPTAEALLYGVLLLQKKIRRTGT 199

Query: 183 VK 184
           ++
Sbjct: 200 IE 201


>gi|157964436|ref|YP_001499260.1| NADH dehydrogenase subunit B [Rickettsia massiliae MTU5]
 gi|218528019|sp|A8F1C7|NUOB_RICM5 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|157844212|gb|ABV84713.1| NADH dehydrogenase I chain B [Rickettsia massiliae MTU5]
          Length = 174

 Score =  256 bits (653), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 114/158 (72%), Positives = 136/158 (86%)

Query: 27  SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP 86
             +S+E++++GFL+T VD ++ WAR  SL  MTFGLACCAVEMMQA+  RYD++RFG   
Sbjct: 10  ELLSNELSNRGFLLTKVDNVIGWARANSLWPMTFGLACCAVEMMQAAASRYDMDRFGMLF 69

Query: 87  RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGC 146
           R SPRQSD+MIVAGTLTNKMA ALR+VYDQM EP++V+SMGSCANGGGYYH+SYSVVRGC
Sbjct: 70  RPSPRQSDLMIVAGTLTNKMAPALRKVYDQMAEPKWVLSMGSCANGGGYYHFSYSVVRGC 129

Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           DRIVPVD+YVPGCPPTAEALIYG++ LQKKI+R    K
Sbjct: 130 DRIVPVDVYVPGCPPTAEALIYGLMQLQKKIKRTTGFK 167


>gi|259418740|ref|ZP_05742657.1| NADH-quinone oxidoreductase subunit b [Silicibacter sp. TrichCH4B]
 gi|259344962|gb|EEW56816.1| NADH-quinone oxidoreductase subunit b [Silicibacter sp. TrichCH4B]
          Length = 177

 Score =  255 bits (652), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 129/175 (73%), Positives = 151/175 (86%), Gaps = 1/175 (0%)

Query: 9   KIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVE 68
            +++G ++  ++K +     +++E+  KGFL+TS + ++ WARTGSL WMTFGLACCAVE
Sbjct: 2   GVMAGANTAGVDK-EVVTQALNAELQDKGFLLTSAEDIINWARTGSLHWMTFGLACCAVE 60

Query: 69  MMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGS 128
           MM  SMPRYD ERFG APRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGS
Sbjct: 61  MMHTSMPRYDAERFGIAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGS 120

Query: 129 CANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           CANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG++ LQ+KIRR G +
Sbjct: 121 CANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGLMQLQRKIRRTGTL 175


>gi|83942674|ref|ZP_00955135.1| NADH dehydrogenase beta subunit [Sulfitobacter sp. EE-36]
 gi|83953913|ref|ZP_00962634.1| NADH dehydrogenase beta subunit [Sulfitobacter sp. NAS-14.1]
 gi|83841858|gb|EAP81027.1| NADH dehydrogenase beta subunit [Sulfitobacter sp. NAS-14.1]
 gi|83846767|gb|EAP84643.1| NADH dehydrogenase beta subunit [Sulfitobacter sp. EE-36]
          Length = 178

 Score =  255 bits (652), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 127/161 (78%), Positives = 142/161 (88%)

Query: 23  DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82
           D     ++ E+  KGFL+TS + ++ WARTGSL WMTFGLACCAVEMM  SMPRYDLERF
Sbjct: 16  DVATQNLNKELQDKGFLLTSTEDIINWARTGSLHWMTFGLACCAVEMMHTSMPRYDLERF 75

Query: 83  GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142
           G APRASPRQSD+MIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSV
Sbjct: 76  GTAPRASPRQSDLMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSV 135

Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           VRGCDR+VPVD+YVPGCPPTAEAL+YGI+ LQ+KIRR G +
Sbjct: 136 VRGCDRVVPVDVYVPGCPPTAEALLYGIMQLQRKIRRTGTI 176


>gi|86137600|ref|ZP_01056177.1| NADH dehydrogenase beta subunit [Roseobacter sp. MED193]
 gi|85825935|gb|EAQ46133.1| NADH dehydrogenase beta subunit [Roseobacter sp. MED193]
          Length = 174

 Score =  255 bits (652), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 129/173 (74%), Positives = 150/173 (86%), Gaps = 1/173 (0%)

Query: 11  ISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMM 70
           ++G ++  ++K +     +++E+  KGFL+TS + ++ WARTGSL WMTFGLACCAVEMM
Sbjct: 1   MTGANTAGVDK-EVVTQALNAELQDKGFLLTSTEDIINWARTGSLHWMTFGLACCAVEMM 59

Query: 71  QASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCA 130
             SMPRYD ERFG APRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCA
Sbjct: 60  HTSMPRYDAERFGIAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCA 119

Query: 131 NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG++ LQ+KIRR G +
Sbjct: 120 NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGLMQLQRKIRRTGTL 172


>gi|254511808|ref|ZP_05123875.1| NADH dehydrogenase i, b subunit [Rhodobacteraceae bacterium KLH11]
 gi|221535519|gb|EEE38507.1| NADH dehydrogenase i, b subunit [Rhodobacteraceae bacterium KLH11]
          Length = 174

 Score =  255 bits (652), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 129/173 (74%), Positives = 150/173 (86%), Gaps = 1/173 (0%)

Query: 11  ISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMM 70
           ++G ++  ++K +     +++E+  KGFL+TS + ++ WARTGSL WMTFGLACCAVEMM
Sbjct: 1   MTGANTAGVDK-EVATQALNAELQDKGFLLTSTEDIINWARTGSLHWMTFGLACCAVEMM 59

Query: 71  QASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCA 130
             SMPRYD ERFG APRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCA
Sbjct: 60  HTSMPRYDAERFGIAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCA 119

Query: 131 NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG++ LQ+KIRR G +
Sbjct: 120 NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGLMQLQRKIRRTGTI 172


>gi|86749691|ref|YP_486187.1| NADH dehydrogenase subunit B [Rhodopseudomonas palustris HaA2]
 gi|86572719|gb|ABD07276.1| NADH-quinone oxidoreductase, B subunit [Rhodopseudomonas palustris
           HaA2]
          Length = 204

 Score =  255 bits (652), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 137/182 (75%), Positives = 152/182 (83%)

Query: 3   LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62
           +      II   +   +   D  F  ++ E++ KGF V + D L+TWARTGSLMWMTFGL
Sbjct: 22  IARAPSGIIDPNTGKPVGADDPFFLDVNRELSDKGFFVAATDDLITWARTGSLMWMTFGL 81

Query: 63  ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122
           ACCAVEMMQ SMPRYD ERFGFAPRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRY
Sbjct: 82  ACCAVEMMQLSMPRYDAERFGFAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRY 141

Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
           VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG++LLQKKIRR G 
Sbjct: 142 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGVMLLQKKIRRTGT 201

Query: 183 VK 184
           ++
Sbjct: 202 IE 203


>gi|330994055|ref|ZP_08317985.1| NADH-quinone oxidoreductase subunit B 2 [Gluconacetobacter sp.
           SXCC-1]
 gi|329759001|gb|EGG75515.1| NADH-quinone oxidoreductase subunit B 2 [Gluconacetobacter sp.
           SXCC-1]
          Length = 192

 Score =  255 bits (652), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 127/168 (75%), Positives = 141/168 (83%)

Query: 17  CSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPR 76
               + DA    I+ E+T KGF+V ++D+LV W RTGSL  M+FGLACCAVEM+ A MPR
Sbjct: 23  PPGPEQDAVIKGITGEMTEKGFVVANLDRLVNWGRTGSLWPMSFGLACCAVEMIHAYMPR 82

Query: 77  YDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY 136
           YDL+R G  PR SPRQSDVMIVAGTLTNKMA ALRRVYDQM EPR+VISMGSCANGGGYY
Sbjct: 83  YDLDRMGIIPRGSPRQSDVMIVAGTLTNKMAPALRRVYDQMAEPRWVISMGSCANGGGYY 142

Query: 137 HYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           HYSYSVVRGCDRIVPVD+YVPGCPPTAEALIYGIL LQKKIRR G ++
Sbjct: 143 HYSYSVVRGCDRIVPVDVYVPGCPPTAEALIYGILQLQKKIRRTGTIR 190


>gi|254476799|ref|ZP_05090185.1| NADH-quinone oxidoreductase chain b [Ruegeria sp. R11]
 gi|214031042|gb|EEB71877.1| NADH-quinone oxidoreductase chain b [Ruegeria sp. R11]
          Length = 177

 Score =  255 bits (652), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 127/175 (72%), Positives = 151/175 (86%), Gaps = 1/175 (0%)

Query: 9   KIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVE 68
            +++G ++  ++K +     +++E+  KGFL+TS + ++ WARTGSL WMTFGLACCAVE
Sbjct: 2   GVMTGANTAGVDK-EMVTQALNAELQDKGFLLTSAEDIINWARTGSLHWMTFGLACCAVE 60

Query: 69  MMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGS 128
           MM  SMPRYD ERFG APRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGS
Sbjct: 61  MMHTSMPRYDAERFGIAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGS 120

Query: 129 CANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           CANGGGYYHYSYSVVRGCDR+VPVD+YVPGCPPTAEAL+YG++ LQ+KIRR G +
Sbjct: 121 CANGGGYYHYSYSVVRGCDRVVPVDVYVPGCPPTAEALLYGLMQLQRKIRRTGTL 175


>gi|163746197|ref|ZP_02153556.1| NADH dehydrogenase subunit B [Oceanibulbus indolifex HEL-45]
 gi|161380942|gb|EDQ05352.1| NADH dehydrogenase subunit B [Oceanibulbus indolifex HEL-45]
          Length = 204

 Score =  255 bits (652), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 129/161 (80%), Positives = 144/161 (89%)

Query: 23  DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82
           D     +++E+  KGFL+TS + ++ WARTGSL WMTFGLACCAVEMM +SMPRYDLERF
Sbjct: 42  DVATHSLNAELQDKGFLLTSTEDIINWARTGSLHWMTFGLACCAVEMMHSSMPRYDLERF 101

Query: 83  GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142
           G APRASPRQSD+MIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSV
Sbjct: 102 GTAPRASPRQSDLMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSV 161

Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           VRGCDRIVPVD+YVPGCPPTAEAL+YGIL LQ+KIRR G +
Sbjct: 162 VRGCDRIVPVDVYVPGCPPTAEALLYGILQLQRKIRRTGTI 202


>gi|91977356|ref|YP_570015.1| NADH dehydrogenase subunit B [Rhodopseudomonas palustris BisB5]
 gi|122969140|sp|Q135X5|NUOB2_RHOPS RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName:
           Full=NADH dehydrogenase I subunit B 2; AltName:
           Full=NDH-1 subunit B 2
 gi|91683812|gb|ABE40114.1| NADH-quinone oxidoreductase, B subunit [Rhodopseudomonas palustris
           BisB5]
          Length = 199

 Score =  255 bits (652), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 136/182 (74%), Positives = 152/182 (83%)

Query: 3   LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62
           +      II   +   +   D  F  ++ E++ KGF V + D L+TWARTGSLMWMTFGL
Sbjct: 17  IARAPSGIIDPNTGKPVGADDPFFLGVNRELSDKGFFVAATDDLITWARTGSLMWMTFGL 76

Query: 63  ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122
           ACCAVEMMQ SMPRYD ERFGFAPRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRY
Sbjct: 77  ACCAVEMMQLSMPRYDAERFGFAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRY 136

Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
           VISMGSCANGGGYYHYSYSVVRGCDRIVP+DIYVPGCPPTAEAL+YG++LLQKKIRR G 
Sbjct: 137 VISMGSCANGGGYYHYSYSVVRGCDRIVPIDIYVPGCPPTAEALLYGVMLLQKKIRRTGT 196

Query: 183 VK 184
           ++
Sbjct: 197 IE 198


>gi|239947491|ref|ZP_04699244.1| NADH-quinone oxidoreductase subunit B [Rickettsia endosymbiont of
           Ixodes scapularis]
 gi|239921767|gb|EER21791.1| NADH-quinone oxidoreductase subunit B [Rickettsia endosymbiont of
           Ixodes scapularis]
          Length = 187

 Score =  255 bits (652), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 114/158 (72%), Positives = 135/158 (85%)

Query: 27  SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP 86
             ++ E++++GFL+T VD ++ WART SL  MTFGLACCAVEMMQA+  RYD++RFG   
Sbjct: 23  ELLNHELSNRGFLLTKVDDVIGWARTNSLWPMTFGLACCAVEMMQAAASRYDMDRFGMLF 82

Query: 87  RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGC 146
           R SPRQSD+MIVAGTLTNKMA ALR+VYDQM EP++V+SMGSCANGGGYYH+SYSVVRGC
Sbjct: 83  RPSPRQSDLMIVAGTLTNKMAPALRKVYDQMAEPKWVLSMGSCANGGGYYHFSYSVVRGC 142

Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           DRIVPVDIYVPGCPPTAE LIYG++ LQKKI+R    K
Sbjct: 143 DRIVPVDIYVPGCPPTAETLIYGLMQLQKKIKRTTGFK 180


>gi|254465701|ref|ZP_05079112.1| NADH-quinone oxidoreductase chain b [Rhodobacterales bacterium Y4I]
 gi|206686609|gb|EDZ47091.1| NADH-quinone oxidoreductase chain b [Rhodobacterales bacterium Y4I]
          Length = 174

 Score =  255 bits (651), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 127/173 (73%), Positives = 150/173 (86%), Gaps = 1/173 (0%)

Query: 11  ISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMM 70
           ++G ++  ++K +     +++E+  KGFL+TS + ++ WARTGSL WMTFGLACCAVEMM
Sbjct: 1   MTGANTAGVDK-EVVTRALNAELQDKGFLLTSAEDIINWARTGSLHWMTFGLACCAVEMM 59

Query: 71  QASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCA 130
             SMPRYD ERFG APRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCA
Sbjct: 60  HTSMPRYDAERFGIAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCA 119

Query: 131 NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           NGGGYYHYSYSVVRGCDR+VPVD+YVPGCPPTAEAL+YG++ LQ+KIRR G +
Sbjct: 120 NGGGYYHYSYSVVRGCDRVVPVDVYVPGCPPTAEALLYGLMQLQRKIRRTGTL 172


>gi|296444795|ref|ZP_06886758.1| NADH-quinone oxidoreductase, B subunit [Methylosinus trichosporium
           OB3b]
 gi|296257743|gb|EFH04807.1| NADH-quinone oxidoreductase, B subunit [Methylosinus trichosporium
           OB3b]
          Length = 194

 Score =  255 bits (651), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 130/182 (71%), Positives = 156/182 (85%)

Query: 3   LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62
           +    + ++  ++   +   D  +  ++ E+  KGF+VT+ D ++ WARTGSLMWMTFGL
Sbjct: 12  VAPSAKGLVDPRTGKPVGADDPFYLGLNDELADKGFVVTATDDIINWARTGSLMWMTFGL 71

Query: 63  ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122
           ACCAVEM+QA+MPRYDLERFGFAPRASPRQSDV+I+AGTLTNKMA ALR+VYDQMPEPRY
Sbjct: 72  ACCAVEMIQAAMPRYDLERFGFAPRASPRQSDVIIIAGTLTNKMAPALRKVYDQMPEPRY 131

Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
           VISMGSCANGGGYYHYSYSVVRGCDRI+PVDIYVPGCPP+AEAL+YG+LLLQKKIRR G 
Sbjct: 132 VISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPSAEALVYGVLLLQKKIRRSGT 191

Query: 183 VK 184
           ++
Sbjct: 192 IE 193


>gi|89053661|ref|YP_509112.1| NADH dehydrogenase subunit B [Jannaschia sp. CCS1]
 gi|122499244|sp|Q28T75|NUOB_JANSC RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|88863210|gb|ABD54087.1| NADH dehydrogenase subunit B [Jannaschia sp. CCS1]
          Length = 177

 Score =  255 bits (651), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 130/173 (75%), Positives = 145/173 (83%)

Query: 11  ISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMM 70
           ++   + +    +     ++ E+  KGFLVTS + ++ WARTGSL WMTFGLACCAVEMM
Sbjct: 3   VATNPNHAGADREVGTQALNRELQDKGFLVTSSEDIINWARTGSLHWMTFGLACCAVEMM 62

Query: 71  QASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCA 130
             SMPRYD ERFG APRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCA
Sbjct: 63  HTSMPRYDAERFGIAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCA 122

Query: 131 NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQ+KIRR G +
Sbjct: 123 NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQRKIRRTGTI 175


>gi|85708754|ref|ZP_01039820.1| NADH dehydrogenase-ubiquinone oxidoreductase, chain B
           [Erythrobacter sp. NAP1]
 gi|85690288|gb|EAQ30291.1| NADH dehydrogenase-ubiquinone oxidoreductase, chain B
           [Erythrobacter sp. NAP1]
          Length = 197

 Score =  254 bits (650), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 127/189 (67%), Positives = 151/189 (79%), Gaps = 5/189 (2%)

Query: 1   MGLTTVN-----QKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSL 55
           +G+T  N       + + ++    +  +  F  + +E+  KGFLVTS + L  WARTGSL
Sbjct: 8   VGITPPNNLPDVSALETAKAGEVRQPDEDYFRSLQTEVNDKGFLVTSTEDLFQWARTGSL 67

Query: 56  MWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYD 115
            WMTFGLACCAVEM+  +MPRYD+ERFG APRASPRQSDVMIVAGTL NKMA ALR+VYD
Sbjct: 68  WWMTFGLACCAVEMIHVNMPRYDMERFGIAPRASPRQSDVMIVAGTLCNKMAPALRKVYD 127

Query: 116 QMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175
           QM +P+YVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG++ LQ+
Sbjct: 128 QMSDPKYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGVMQLQR 187

Query: 176 KIRRVGNVK 184
           KIRR G ++
Sbjct: 188 KIRRSGTIE 196


>gi|99080583|ref|YP_612737.1| NADH dehydrogenase subunit B [Ruegeria sp. TM1040]
 gi|123077741|sp|Q1GIP1|NUOB_SILST RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|99036863|gb|ABF63475.1| NADH-quinone oxidoreductase B subunit [Ruegeria sp. TM1040]
          Length = 174

 Score =  254 bits (650), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 129/173 (74%), Positives = 150/173 (86%), Gaps = 1/173 (0%)

Query: 11  ISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMM 70
           ++G ++  ++K +     +++E+  KGFL+TS + ++ WARTGSL WMTFGLACCAVEMM
Sbjct: 1   MAGANTAGVDK-EMVTQALNAELQDKGFLLTSAEDIINWARTGSLHWMTFGLACCAVEMM 59

Query: 71  QASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCA 130
             SMPRYD ERFG APRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCA
Sbjct: 60  HTSMPRYDAERFGIAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCA 119

Query: 131 NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG++ LQ+KIRR G +
Sbjct: 120 NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGLMQLQRKIRRTGTL 172


>gi|85374165|ref|YP_458227.1| NADH dehydrogenase subunit B [Erythrobacter litoralis HTCC2594]
 gi|84787248|gb|ABC63430.1| NuoB, NADH dehydrogenase I, B subunit [Erythrobacter litoralis
           HTCC2594]
          Length = 217

 Score =  254 bits (649), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 127/181 (70%), Positives = 148/181 (81%), Gaps = 3/181 (1%)

Query: 7   NQKIISGQSSCSLEKVDAD---FSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLA 63
           N+ +    ++   E    D   F+ + +E+  KGFLVTS + L  WARTGSL WMTFGLA
Sbjct: 36  NRALHDAPTARGGEVRQPDGDYFNALQTEVNDKGFLVTSTEDLFQWARTGSLWWMTFGLA 95

Query: 64  CCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYV 123
           CCAVEM+  +MPRYD+ERFG APRASPRQSDVMIVAGTL NKMA ALR+VYDQM +P+YV
Sbjct: 96  CCAVEMIHVNMPRYDMERFGAAPRASPRQSDVMIVAGTLCNKMAPALRKVYDQMSDPKYV 155

Query: 124 ISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           ISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG++ LQ+KIRR G +
Sbjct: 156 ISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGVMQLQRKIRRSGTI 215

Query: 184 K 184
           +
Sbjct: 216 E 216


>gi|110680471|ref|YP_683478.1| NADH dehydrogenase subunit B [Roseobacter denitrificans OCh 114]
 gi|123172224|sp|Q163Q1|NUOB_ROSDO RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|109456587|gb|ABG32792.1| NADH-quinone oxidoreductase chain B [Roseobacter denitrificans OCh
           114]
          Length = 177

 Score =  254 bits (649), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 125/158 (79%), Positives = 141/158 (89%)

Query: 26  FSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA 85
              ++ E+  KGFL+TS + ++ WARTGSL WMTFGLACCAVEMM  +MPRYD+ERFG A
Sbjct: 18  TQELNRELQDKGFLLTSTEDIINWARTGSLHWMTFGLACCAVEMMHTAMPRYDMERFGTA 77

Query: 86  PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRG 145
           PRASPRQSD+MIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRG
Sbjct: 78  PRASPRQSDLMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRG 137

Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           CDRIVPVD+YVPGCPPTAEAL+YGI+ LQ+KIRR G +
Sbjct: 138 CDRIVPVDVYVPGCPPTAEALLYGIMQLQRKIRRTGTI 175


>gi|56606108|ref|NP_001008525.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 7,
           mitochondrial [Rattus norvegicus]
 gi|55824717|gb|AAH86574.1| NADH dehydrogenase (ubiquinone) Fe-S protein 7 [Rattus norvegicus]
 gi|149034571|gb|EDL89308.1| NADH dehydrogenase (ubiquinone) Fe-S protein 7, isoform CRA_d
           [Rattus norvegicus]
          Length = 218

 Score =  254 bits (649), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 120/183 (65%), Positives = 141/183 (77%), Gaps = 5/183 (2%)

Query: 2   GLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFG 61
           G  +  Q  +S   + ++    +   R  +E     ++VT +D L+ WAR  SL  MTFG
Sbjct: 36  GSPSSTQSAVSKAGAGAVVPKPSHLPRSRAE-----YVVTKLDDLINWARRSSLWPMTFG 90

Query: 62  LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPR 121
           LACCAVEMM  + PRYD++RFG   RASPRQ+DVMIVAGTLTNKMA ALR+VYDQMPEPR
Sbjct: 91  LACCAVEMMHMAAPRYDMDRFGVVFRASPRQADVMIVAGTLTNKMAPALRKVYDQMPEPR 150

Query: 122 YVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
           YV+SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQ+KI+R  
Sbjct: 151 YVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQRKIKREQ 210

Query: 182 NVK 184
            +K
Sbjct: 211 KLK 213


>gi|316933892|ref|YP_004108874.1| NADH-quinone oxidoreductase subunit B [Rhodopseudomonas palustris
           DX-1]
 gi|315601606|gb|ADU44141.1| NADH-quinone oxidoreductase, B subunit [Rhodopseudomonas palustris
           DX-1]
          Length = 198

 Score =  254 bits (648), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 136/182 (74%), Positives = 152/182 (83%)

Query: 3   LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62
           +      II   +   +   D  F  ++ E++ KGF V + D L+TWARTGSLMWMTFGL
Sbjct: 16  IARPATGIIDPSTGKPVGANDPFFLNVNRELSDKGFFVAATDDLITWARTGSLMWMTFGL 75

Query: 63  ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122
           ACCAVEMMQ SMPRYD ERFGFAPRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRY
Sbjct: 76  ACCAVEMMQLSMPRYDAERFGFAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRY 135

Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
           VISMGSCANGGGYYHYSYSVVRGCDRIVP+DIYVPGCPPTAEAL+YG++LLQKKIRR G 
Sbjct: 136 VISMGSCANGGGYYHYSYSVVRGCDRIVPIDIYVPGCPPTAEALLYGVMLLQKKIRRTGT 195

Query: 183 VK 184
           ++
Sbjct: 196 IE 197


>gi|39936016|ref|NP_948292.1| NADH dehydrogenase subunit B [Rhodopseudomonas palustris CGA009]
 gi|192291671|ref|YP_001992276.1| NADH dehydrogenase subunit B [Rhodopseudomonas palustris TIE-1]
 gi|81562349|sp|Q6N5M3|NUOB1_RHOPA RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName:
           Full=NADH dehydrogenase I subunit B 1; AltName:
           Full=NDH-1 subunit B 1
 gi|238065014|sp|B3Q7N5|NUOB1_RHOPT RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName:
           Full=NADH dehydrogenase I subunit B 1; AltName:
           Full=NDH-1 subunit B 1
 gi|39649870|emb|CAE28392.1| NADH-ubiquinone dehydrogenase chain B [Rhodopseudomonas palustris
           CGA009]
 gi|192285420|gb|ACF01801.1| NADH-quinone oxidoreductase, B subunit [Rhodopseudomonas palustris
           TIE-1]
          Length = 198

 Score =  254 bits (648), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 136/182 (74%), Positives = 152/182 (83%)

Query: 3   LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62
           +      II   +   +   D  F  ++ E++ KGF V + D L+TWARTGSLMWMTFGL
Sbjct: 16  IARPATGIIDPNTGRPVGADDPFFLNVNRELSDKGFFVAATDDLITWARTGSLMWMTFGL 75

Query: 63  ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122
           ACCAVEMMQ SMPRYD ERFGFAPRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRY
Sbjct: 76  ACCAVEMMQLSMPRYDAERFGFAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRY 135

Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
           VISMGSCANGGGYYHYSYSVVRGCDRIVP+DIYVPGCPPTAEAL+YG++LLQKKIRR G 
Sbjct: 136 VISMGSCANGGGYYHYSYSVVRGCDRIVPIDIYVPGCPPTAEALLYGVMLLQKKIRRTGT 195

Query: 183 VK 184
           ++
Sbjct: 196 IE 197


>gi|157803902|ref|YP_001492451.1| NADH dehydrogenase subunit B [Rickettsia canadensis str. McKiel]
 gi|218528018|sp|A8EZ83|NUOB_RICCK RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|157785165|gb|ABV73666.1| NADH dehydrogenase beta subunit [Rickettsia canadensis str. McKiel]
          Length = 174

 Score =  254 bits (648), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 112/156 (71%), Positives = 136/156 (87%)

Query: 29  ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88
           ++++++++GFL+T VD ++ WAR  SL  MTFGLACCAVEMMQA+  RYD++RFG   R 
Sbjct: 12  LNNKLSNRGFLLTKVDDVIGWARANSLWPMTFGLACCAVEMMQAAASRYDMDRFGMLFRP 71

Query: 89  SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 148
           SPRQSD+MIVAGTLTNKMA ALR+VYDQM EP++V+SMGSCANGGGYYH+SYSVVRGCDR
Sbjct: 72  SPRQSDLMIVAGTLTNKMAPALRKVYDQMAEPKWVLSMGSCANGGGYYHFSYSVVRGCDR 131

Query: 149 IVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           IVPVDIY+PGCPPTAEALIYG++ LQKKI+R    K
Sbjct: 132 IVPVDIYIPGCPPTAEALIYGLMQLQKKIKRTTGFK 167


>gi|163732066|ref|ZP_02139512.1| NADH dehydrogenase subunit B [Roseobacter litoralis Och 149]
 gi|161394364|gb|EDQ18687.1| NADH dehydrogenase subunit B [Roseobacter litoralis Och 149]
          Length = 177

 Score =  254 bits (648), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 126/173 (72%), Positives = 146/173 (84%)

Query: 11  ISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMM 70
           ++   + +    +     ++ E+  KGFL+TS + ++ WARTGSL WMTFGLACCAVEMM
Sbjct: 3   VATNVNVAGADREVATQELNRELQDKGFLLTSTEDIINWARTGSLHWMTFGLACCAVEMM 62

Query: 71  QASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCA 130
             +MPRYD+ERFG APRASPRQSD+MIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCA
Sbjct: 63  HTAMPRYDMERFGTAPRASPRQSDLMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCA 122

Query: 131 NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGI+ LQ+KIRR G +
Sbjct: 123 NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGIMQLQRKIRRTGTI 175


>gi|326934474|ref|XP_003213314.1| PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 7,
           mitochondrial-like, partial [Meleagris gallopavo]
          Length = 212

 Score =  254 bits (648), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 121/174 (69%), Positives = 138/174 (79%), Gaps = 1/174 (0%)

Query: 12  SGQSSCSLEKVDADFSRISSEITHKG-FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMM 70
           +  S     K  A   + S   T +G ++VT +D L+ WAR  SL  MTFGLACCAVEMM
Sbjct: 34  ADSSVQVQPKSSAVLPKKSYVPTSRGEYIVTKLDDLINWARRSSLWPMTFGLACCAVEMM 93

Query: 71  QASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCA 130
             + PRYD++RFG   RASPRQ+DVMIVAGTLTNKMA ALR+VYDQMPEPRYV+SMGSCA
Sbjct: 94  HMAAPRYDMDRFGVVFRASPRQADVMIVAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCA 153

Query: 131 NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQKKI+R   ++
Sbjct: 154 NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKIKREKKIQ 207


>gi|315499789|ref|YP_004088592.1| NADH-quinone oxidoreductase, b subunit [Asticcacaulis excentricus
           CB 48]
 gi|315417801|gb|ADU14441.1| NADH-quinone oxidoreductase, B subunit [Asticcacaulis excentricus
           CB 48]
          Length = 186

 Score =  254 bits (648), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 137/185 (74%), Positives = 154/185 (83%), Gaps = 1/185 (0%)

Query: 1   MGLT-TVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMT 59
           MG+     Q   S       +  D  F  +SSE+  KGFLV S D ++TWARTGSLMWMT
Sbjct: 1   MGVIIPAGQAGRSTVEGYDPKVHDKFFEAVSSELNEKGFLVASADDVITWARTGSLMWMT 60

Query: 60  FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119
           FGLACCAVEMMQASMPRYD+ERFG APRASPRQSD+MIVAGTLTNKMA ALR+VYDQMP+
Sbjct: 61  FGLACCAVEMMQASMPRYDMERFGMAPRASPRQSDLMIVAGTLTNKMAPALRKVYDQMPD 120

Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           PRYV+SMGSCANGGGYYHYSYSVVRGCDRIVPVD+YVPGCPP+AEAL+YG+L LQKKIRR
Sbjct: 121 PRYVLSMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPSAEALLYGLLQLQKKIRR 180

Query: 180 VGNVK 184
            G ++
Sbjct: 181 NGTIR 185


>gi|148255914|ref|YP_001240499.1| NADH dehydrogenase subunit B [Bradyrhizobium sp. BTAi1]
 gi|238055271|sp|A5EK99|NUOB_BRASB RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|146408087|gb|ABQ36593.1| NADH dehydrogenase subunit B [Bradyrhizobium sp. BTAi1]
          Length = 194

 Score =  254 bits (648), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 136/182 (74%), Positives = 153/182 (84%)

Query: 3   LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62
           +    + I+   +   +   D  F  +  E++ KGF V + D L+TWARTGSLMWMTFGL
Sbjct: 12  IAPAPKGILDPATGRPIGANDPYFLEVRHELSDKGFFVATADDLITWARTGSLMWMTFGL 71

Query: 63  ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122
           ACCAVEMMQ SMPRYD+ERFGFAPRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRY
Sbjct: 72  ACCAVEMMQVSMPRYDVERFGFAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRY 131

Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
           VISMGSCANGGGYYHYSYSVVRGCDRIVP+DIYVPGCPPTAEAL+YG+LLLQKKIRR G 
Sbjct: 132 VISMGSCANGGGYYHYSYSVVRGCDRIVPIDIYVPGCPPTAEALLYGVLLLQKKIRRTGT 191

Query: 183 VK 184
           ++
Sbjct: 192 IE 193


>gi|115524527|ref|YP_781438.1| NADH dehydrogenase subunit B [Rhodopseudomonas palustris BisA53]
 gi|122296214|sp|Q07NM6|NUOB2_RHOP5 RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName:
           Full=NADH dehydrogenase I subunit B 2; AltName:
           Full=NDH-1 subunit B 2
 gi|115518474|gb|ABJ06458.1| NADH-quinone oxidoreductase, B subunit [Rhodopseudomonas palustris
           BisA53]
          Length = 200

 Score =  254 bits (648), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 134/182 (73%), Positives = 155/182 (85%)

Query: 3   LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62
           +      I+  ++   +   D  F  +++E++ KGF V + D L+TWARTGSLMWMTFGL
Sbjct: 18  IAPAATGILDPRTGRPVGADDRFFVEVNNELSDKGFFVAATDDLITWARTGSLMWMTFGL 77

Query: 63  ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122
           ACCAVEMMQ SMPRYD ERFGFAPRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRY
Sbjct: 78  ACCAVEMMQMSMPRYDAERFGFAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRY 137

Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
           VISMGSCANGGGYYHYSY+VVRGCDRIVP+DIYVPGCPPTAEAL+YG++LLQKKIRR+G 
Sbjct: 138 VISMGSCANGGGYYHYSYAVVRGCDRIVPIDIYVPGCPPTAEALLYGVMLLQKKIRRIGT 197

Query: 183 VK 184
           ++
Sbjct: 198 IE 199


>gi|114771817|ref|ZP_01449210.1| NADH dehydrogenase subunit B [alpha proteobacterium HTCC2255]
 gi|114547633|gb|EAU50524.1| NADH dehydrogenase subunit B [alpha proteobacterium HTCC2255]
          Length = 177

 Score =  254 bits (648), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 129/173 (74%), Positives = 148/173 (85%)

Query: 11  ISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMM 70
           +S   + +    +   S ++ E+  KGFL+TS + ++ WARTGSL WMTFGLACCAVEMM
Sbjct: 3   VSTSLNTAGANKELATSALNRELQDKGFLLTSAEDIINWARTGSLHWMTFGLACCAVEMM 62

Query: 71  QASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCA 130
            ++MPRYDLERFG APRASPRQSD+MIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCA
Sbjct: 63  HSAMPRYDLERFGTAPRASPRQSDLMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCA 122

Query: 131 NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQ+K+RR G +
Sbjct: 123 NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQRKMRRTGTI 175


>gi|302383046|ref|YP_003818869.1| NADH-quinone oxidoreductase subunit beta [Brevundimonas
           subvibrioides ATCC 15264]
 gi|302193674|gb|ADL01246.1| NADH-quinone oxidoreductase, B subunit [Brevundimonas subvibrioides
           ATCC 15264]
          Length = 193

 Score =  253 bits (647), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 131/161 (81%), Positives = 145/161 (90%)

Query: 23  DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82
           D  F  +++EI  +GFL  S+D ++ WARTGSLMWMTFGLACCAVEM+QASMPRYDLERF
Sbjct: 31  DKFFEAVNTEIAEQGFLTASLDDVINWARTGSLMWMTFGLACCAVEMIQASMPRYDLERF 90

Query: 83  GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142
           G APRASPRQSD+MIVAGTLTNKMA ALR+VYDQMP+PRYV+SMGSCANGGGYYHYSYSV
Sbjct: 91  GMAPRASPRQSDLMIVAGTLTNKMAPALRKVYDQMPDPRYVLSMGSCANGGGYYHYSYSV 150

Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           VRGCDRIVPVD YVPGCPPTAEALIYG+L LQKKIRR G +
Sbjct: 151 VRGCDRIVPVDAYVPGCPPTAEALIYGLLQLQKKIRRTGTI 191


>gi|147902669|ref|NP_001087274.1| MGC85267 protein [Xenopus laevis]
 gi|51873813|gb|AAH78494.1| MGC85267 protein [Xenopus laevis]
          Length = 217

 Score =  253 bits (647), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 121/166 (72%), Positives = 140/166 (84%), Gaps = 1/166 (0%)

Query: 20  EKVDADFSRISSEITHKG-FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78
           +   A  ++ SS  ++KG F++T +D+LV WAR  SL  MTFGLACCAVEMM  + PRYD
Sbjct: 47  QNSSAVTAKKSSLPSNKGEFVITKLDELVNWARRSSLWPMTFGLACCAVEMMHMAAPRYD 106

Query: 79  LERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY 138
           ++RFG   RASPRQ+DVMIVAGTLTNKMA ALR+VYDQMPEPRYV+SMGSCANGGGYYHY
Sbjct: 107 MDRFGVVFRASPRQADVMIVAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGYYHY 166

Query: 139 SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           SYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQKKI+R   ++
Sbjct: 167 SYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKIKREKRLR 212


>gi|258542721|ref|YP_003188154.1| NADH dehydrogenase subunit B [Acetobacter pasteurianus IFO 3283-01]
 gi|256633799|dbj|BAH99774.1| NADH-quinone oxidoreductase chain B [Acetobacter pasteurianus IFO
           3283-01]
 gi|256636858|dbj|BAI02827.1| NADH-quinone oxidoreductase chain B [Acetobacter pasteurianus IFO
           3283-03]
 gi|256639911|dbj|BAI05873.1| NADH-quinone oxidoreductase chain B [Acetobacter pasteurianus IFO
           3283-07]
 gi|256642967|dbj|BAI08922.1| NADH-quinone oxidoreductase chain B [Acetobacter pasteurianus IFO
           3283-22]
 gi|256646022|dbj|BAI11970.1| NADH-quinone oxidoreductase chain B [Acetobacter pasteurianus IFO
           3283-26]
 gi|256649075|dbj|BAI15016.1| NADH-quinone oxidoreductase chain B [Acetobacter pasteurianus IFO
           3283-32]
 gi|256652062|dbj|BAI17996.1| NADH-quinone oxidoreductase chain B [Acetobacter pasteurianus IFO
           3283-01-42C]
 gi|256655119|dbj|BAI21046.1| NADH-quinone oxidoreductase chain B [Acetobacter pasteurianus IFO
           3283-12]
          Length = 186

 Score =  253 bits (647), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 123/183 (67%), Positives = 144/183 (78%)

Query: 1   MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTF 60
           M     +  + + ++     + DA    I+  +  KGF+V ++D+LV W RTGSL  M+F
Sbjct: 1   MTTNQQDAVLWNREALPPGPEQDAVVRGITGVLAEKGFVVANLDKLVNWGRTGSLWPMSF 60

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           GLACCAVEM+ A MPRYDL+R G  PR SPRQSDVMIVAGTLTNKMA  LRR+Y+QM EP
Sbjct: 61  GLACCAVEMIHAYMPRYDLDRMGIIPRGSPRQSDVMIVAGTLTNKMAPVLRRLYEQMAEP 120

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           R+VISMGSCANGGGYYHYSYSVVRGCDRIVPVD+YVPGCPPTAEALIYGI+LLQKKIRR 
Sbjct: 121 RWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALIYGIMLLQKKIRRT 180

Query: 181 GNV 183
           G +
Sbjct: 181 GTI 183


>gi|255262340|ref|ZP_05341682.1| NADH-quinone oxidoreductase subunit b [Thalassiobium sp. R2A62]
 gi|255104675|gb|EET47349.1| NADH-quinone oxidoreductase subunit b [Thalassiobium sp. R2A62]
          Length = 177

 Score =  253 bits (647), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 127/158 (80%), Positives = 141/158 (89%)

Query: 26  FSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA 85
              ++ E+  KGFL+TS + ++ WARTGSL WMTFGLACCAVEMM  SMPRYDLERFG A
Sbjct: 18  TQELNRELQDKGFLLTSTEDIINWARTGSLHWMTFGLACCAVEMMHTSMPRYDLERFGTA 77

Query: 86  PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRG 145
           PRASPRQSD+MIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRG
Sbjct: 78  PRASPRQSDLMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRG 137

Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           CDRIVPVD+YVPGCPPTAEAL+YGIL LQ+K+RR G +
Sbjct: 138 CDRIVPVDVYVPGCPPTAEALLYGILQLQRKMRRTGTL 175


>gi|262277300|ref|ZP_06055093.1| NADH-quinone oxidoreductase subunit b (nadhdehydrogenase i subunit
           b) (ndh-1 subunit b) [alpha proteobacterium HIMB114]
 gi|262224403|gb|EEY74862.1| NADH-quinone oxidoreductase subunit b (nadhdehydrogenase i subunit
           b) (ndh-1 subunit b) [alpha proteobacterium HIMB114]
          Length = 173

 Score =  253 bits (647), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 132/166 (79%), Positives = 148/166 (89%)

Query: 19  LEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78
           L+++  +F  ++ E + KGF+  + D L+ WARTGSL WMTFGLACCAVEMMQASMPRYD
Sbjct: 7   LDQIPQEFREVAEEFSEKGFVTIASDTLINWARTGSLHWMTFGLACCAVEMMQASMPRYD 66

Query: 79  LERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY 138
           LERFG APRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHY
Sbjct: 67  LERFGAAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHY 126

Query: 139 SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           SYSVVRGCDRIVPVDIYVPGCPP+AEAL+Y IL LQKKIRR G+++
Sbjct: 127 SYSVVRGCDRIVPVDIYVPGCPPSAEALLYAILQLQKKIRREGSLQ 172


>gi|163793188|ref|ZP_02187164.1| excinuclease ABC subunit A [alpha proteobacterium BAL199]
 gi|159181834|gb|EDP66346.1| excinuclease ABC subunit A [alpha proteobacterium BAL199]
          Length = 179

 Score =  253 bits (647), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 123/183 (67%), Positives = 141/183 (77%), Gaps = 6/183 (3%)

Query: 1   MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTF 60
           MG+    + + +G +       DA  S +S EI  KGF++   D+L  WAR GSL  MTF
Sbjct: 1   MGVINAERPVPAGANQ------DAILSAVSDEIREKGFVIAQADKLFNWARCGSLWPMTF 54

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           GLACCAVEMM  +  RYDL+RFG   R SPRQSDVMIVAGTLTNKMA ALR+VYDQM EP
Sbjct: 55  GLACCAVEMMHTAASRYDLDRFGLVFRPSPRQSDVMIVAGTLTNKMAPALRKVYDQMAEP 114

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           R+VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG+L LQ+KI+R 
Sbjct: 115 RWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGVLQLQRKIKRT 174

Query: 181 GNV 183
             +
Sbjct: 175 ATI 177


>gi|21312950|ref|NP_083548.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 7,
           mitochondrial precursor [Mus musculus]
 gi|47117311|sp|Q9DC70|NDUS7_MOUSE RecName: Full=NADH dehydrogenase [ubiquinone] iron-sulfur protein
           7, mitochondrial; AltName: Full=Complex I-20kD;
           Short=CI-20kD; AltName: Full=NADH-ubiquinone
           oxidoreductase 20 kDa subunit; Flags: Precursor
 gi|12833606|dbj|BAB22592.1| unnamed protein product [Mus musculus]
 gi|15488721|gb|AAH13503.1| NADH dehydrogenase (ubiquinone) Fe-S protein 7 [Mus musculus]
 gi|148699633|gb|EDL31580.1| NADH dehydrogenase (ubiquinone) Fe-S protein 7, isoform CRA_b [Mus
           musculus]
          Length = 224

 Score =  253 bits (647), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 115/151 (76%), Positives = 130/151 (86%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
           +   ++VT +D L+ WAR  SL  MTFGLACCAVEMM  + PRYD++RFG   RASPRQ+
Sbjct: 69  SRAEYVVTKLDDLINWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQA 128

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD 153
           DVMIVAGTLTNKMA ALR+VYDQMPEPRYV+SMGSCANGGGYYHYSYSVVRGCDRIVPVD
Sbjct: 129 DVMIVAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPVD 188

Query: 154 IYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           IYVPGCPPTAEAL+YGIL LQ+KI+R   +K
Sbjct: 189 IYVPGCPPTAEALLYGILQLQRKIKREQKLK 219


>gi|197128812|gb|ACH45310.1| putative NADH dehydrogenase Fe-S protein 7 >Feature gb|DQ213771
           [Taeniopygia guttata]
          Length = 216

 Score =  253 bits (647), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 120/174 (68%), Positives = 140/174 (80%), Gaps = 1/174 (0%)

Query: 12  SGQSSCSLEKVDADFSRISSEITHKG-FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMM 70
           +  SS  ++K  A   R S   + +G +++  +D LV WAR  SL  MTFGLACCAVEMM
Sbjct: 38  AADSSVQVQKSSAVVPRKSYVPSSRGEYVIAKLDDLVNWARRSSLWPMTFGLACCAVEMM 97

Query: 71  QASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCA 130
             + PRYD++RFG   RASPRQ+DVMIVAGTLTNKMA ALR+VYDQMPEPRYV+SMGSCA
Sbjct: 98  HMAAPRYDMDRFGVVFRASPRQADVMIVAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCA 157

Query: 131 NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQ+KI+R   ++
Sbjct: 158 NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQRKIKREKRMQ 211


>gi|87200316|ref|YP_497573.1| NADH dehydrogenase subunit B [Novosphingobium aromaticivorans DSM
           12444]
 gi|123488910|sp|Q2G5Y4|NUOB_NOVAD RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|87135997|gb|ABD26739.1| NADH dehydrogenase subunit B [Novosphingobium aromaticivorans DSM
           12444]
          Length = 181

 Score =  253 bits (646), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 125/177 (70%), Positives = 146/177 (82%)

Query: 8   QKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAV 67
             +++           A F  +++E+  KGFLVTS ++L  WARTGSL WMTFGLACCAV
Sbjct: 4   SPLVTADQGAVAAPDQAFFDSLNAEVNDKGFLVTSTEELFQWARTGSLWWMTFGLACCAV 63

Query: 68  EMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMG 127
           EM+  +MPRYD+ERFG APRASPRQSDVMIVAGTL NKMA ALR+VYDQM +P+YVISMG
Sbjct: 64  EMIHVNMPRYDMERFGVAPRASPRQSDVMIVAGTLCNKMAPALRKVYDQMSDPKYVISMG 123

Query: 128 SCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           SCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG++ LQ+KIRR G ++
Sbjct: 124 SCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGVMQLQRKIRRAGTLE 180


>gi|118404166|ref|NP_001072396.1| NADH dehydrogenase (ubiquinone) Fe-S protein 7, 20kDa
           (NADH-coenzyme Q reductase) [Xenopus (Silurana)
           tropicalis]
 gi|113197754|gb|AAI21597.1| hypothetical protein MGC147194 [Xenopus (Silurana) tropicalis]
          Length = 217

 Score =  253 bits (646), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 121/166 (72%), Positives = 140/166 (84%), Gaps = 1/166 (0%)

Query: 20  EKVDADFSRISSEITHKG-FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78
           +K  A  ++ S   ++KG F++T +D+LV WAR  SL  MTFGLACCAVEMM  + PRYD
Sbjct: 47  QKSSAVTAKKSLLPSNKGEFVITKLDELVNWARRSSLWPMTFGLACCAVEMMHMAAPRYD 106

Query: 79  LERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY 138
           ++RFG   RASPRQ+DVMIVAGTLTNKMA ALR+VYDQMPEPRYV+SMGSCANGGGYYHY
Sbjct: 107 MDRFGVVFRASPRQADVMIVAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGYYHY 166

Query: 139 SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           SYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQKKI+R   ++
Sbjct: 167 SYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKIKREKRLR 212


>gi|90423901|ref|YP_532271.1| NADH dehydrogenase subunit B [Rhodopseudomonas palustris BisB18]
 gi|122476336|sp|Q215I4|NUOB1_RHOPB RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName:
           Full=NADH dehydrogenase I subunit B 1; AltName:
           Full=NDH-1 subunit B 1
 gi|90105915|gb|ABD87952.1| NADH-quinone oxidoreductase, B subunit [Rhodopseudomonas palustris
           BisB18]
          Length = 201

 Score =  253 bits (646), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 134/182 (73%), Positives = 153/182 (84%)

Query: 3   LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62
           +      I+  ++   +   D  F  +++E+  KGF V + D L+TWARTGSLMWMTFGL
Sbjct: 19  VAPAATGILDPRTGRPVGADDRFFLEVNNELADKGFFVAATDDLITWARTGSLMWMTFGL 78

Query: 63  ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122
           ACCAVEMMQ SMPRYD ERFGFAPRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRY
Sbjct: 79  ACCAVEMMQMSMPRYDAERFGFAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRY 138

Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
           VISMGSCANGGGYYHYSY+VVRGCDRIVP+DIYVPGCPPTAEAL+YG++LLQKKIRR G 
Sbjct: 139 VISMGSCANGGGYYHYSYAVVRGCDRIVPIDIYVPGCPPTAEALLYGVMLLQKKIRRTGT 198

Query: 183 VK 184
           ++
Sbjct: 199 IE 200


>gi|148259933|ref|YP_001234060.1| NADH dehydrogenase subunit B [Acidiphilium cryptum JF-5]
 gi|326403113|ref|YP_004283194.1| NADH-quinone oxidoreductase subunit B [Acidiphilium multivorum
           AIU301]
 gi|218527971|sp|A5FX09|NUOB1_ACICJ RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName:
           Full=NADH dehydrogenase I subunit B 1; AltName:
           Full=NDH-1 subunit B 1
 gi|146401614|gb|ABQ30141.1| NADH dehydrogenase subunit B [Acidiphilium cryptum JF-5]
 gi|325049974|dbj|BAJ80312.1| NADH-quinone oxidoreductase subunit B [Acidiphilium multivorum
           AIU301]
          Length = 186

 Score =  253 bits (646), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 127/166 (76%), Positives = 141/166 (84%)

Query: 18  SLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRY 77
              + +A    I+ EI  KGF+V ++D+LV WARTGSL  MTFGLACCAVEM+ A MPR+
Sbjct: 18  PGAEQEAVIRGITGEIAGKGFVVANLDRLVNWARTGSLWPMTFGLACCAVEMIHAYMPRW 77

Query: 78  DLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137
           DL+RFG  PR SPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYH
Sbjct: 78  DLDRFGIIPRNSPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYH 137

Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           YSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGI  LQKKIRR G +
Sbjct: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALVYGITQLQKKIRRTGTI 183


>gi|254294103|ref|YP_003060126.1| NADH-quinone oxidoreductase subunit beta [Hirschia baltica ATCC
           49814]
 gi|254042634|gb|ACT59429.1| NADH-quinone oxidoreductase, B subunit [Hirschia baltica ATCC
           49814]
          Length = 188

 Score =  253 bits (646), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 128/183 (69%), Positives = 150/183 (81%)

Query: 1   MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTF 60
           M   TVN    +  +S  +   D  F+ +S E+  KGF+V  +D  ++WARTGSLM+M+F
Sbjct: 4   MSTPTVNSAQSASDASAKIRGDDPFFAGVSDELADKGFVVAKLDDAISWARTGSLMFMSF 63

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           GLACCAVEMM A+ PRYD+ERFG APR +PRQSD+MIVAGTLTNKMA A+R+VYDQM EP
Sbjct: 64  GLACCAVEMMHAANPRYDMERFGMAPRGTPRQSDLMIVAGTLTNKMAPAMRKVYDQMAEP 123

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD+YVPGCPPTAEAL+YG+L LQKKIRR 
Sbjct: 124 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALMYGLLQLQKKIRRE 183

Query: 181 GNV 183
           G +
Sbjct: 184 GTI 186


>gi|329114679|ref|ZP_08243438.1| NADH-quinone oxidoreductase subunit B 2 [Acetobacter pomorum DM001]
 gi|326696159|gb|EGE47841.1| NADH-quinone oxidoreductase subunit B 2 [Acetobacter pomorum DM001]
          Length = 186

 Score =  253 bits (646), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 123/183 (67%), Positives = 144/183 (78%)

Query: 1   MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTF 60
           M     +  + + ++     + DA    I+  +  KGF+V ++D+LV W RTGSL  M+F
Sbjct: 1   MTANQQDAVLWNREALPPGPEQDAVVRGITGVLAEKGFVVANLDKLVNWGRTGSLWPMSF 60

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           GLACCAVEM+ A MPRYDL+R G  PR SPRQSDVMIVAGTLTNKMA  LRR+Y+QM EP
Sbjct: 61  GLACCAVEMIHAYMPRYDLDRMGIIPRGSPRQSDVMIVAGTLTNKMAPVLRRLYEQMAEP 120

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           R+VISMGSCANGGGYYHYSYSVVRGCDRIVPVD+YVPGCPPTAEALIYGI+LLQKKIRR 
Sbjct: 121 RWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALIYGIMLLQKKIRRT 180

Query: 181 GNV 183
           G +
Sbjct: 181 GTI 183


>gi|318054193|ref|NP_001187743.1| mitochondrial NADH dehydrogenase (ubiquinone) iron-sulfur protein 7
           [Ictalurus punctatus]
 gi|308323857|gb|ADO29064.1| mitochondrial NADH dehydrogenase (ubiquinone) iron-sulfur protein 7
           [Ictalurus punctatus]
          Length = 217

 Score =  253 bits (646), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 120/166 (72%), Positives = 138/166 (83%), Gaps = 1/166 (0%)

Query: 20  EKVDADFSRISSEITHKG-FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78
           EK  A   + +S ++ KG +++T +D LV WAR  SL  MTFGLACCAVEMM  + PRYD
Sbjct: 47  EKSTAVALKPTSAVSSKGEYVITKLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPRYD 106

Query: 79  LERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY 138
           ++RFG   RASPRQ+DVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHY
Sbjct: 107 MDRFGVVFRASPRQADVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHY 166

Query: 139 SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           SYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG L LQ+KI+R   ++
Sbjct: 167 SYSVVRGCDRIVPVDIYVPGCPPTAEALLYGTLQLQRKIKREKKMR 212


>gi|148236498|ref|NP_001088930.1| NADH dehydrogenase (ubiquinone) Fe-S protein 7, 20kDa
           (NADH-coenzyme Q reductase) [Xenopus laevis]
 gi|57032922|gb|AAH88820.1| LOC496303 protein [Xenopus laevis]
          Length = 180

 Score =  252 bits (645), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 121/175 (69%), Positives = 141/175 (80%), Gaps = 1/175 (0%)

Query: 11  ISGQSSCSLEKVDADFSRISSEITHKG-FLVTSVDQLVTWARTGSLMWMTFGLACCAVEM 69
           +   S  S  +      + +S  ++KG F++T +D+LV WAR  SL  MTFGLACCAVEM
Sbjct: 1   MPPASYQSDRRAVQSLQKKTSLPSNKGEFVITKLDELVNWARRSSLWPMTFGLACCAVEM 60

Query: 70  MQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSC 129
           M  + PRYD++RFG   RASPRQ+DVMIVAGTLTNKMA ALR+VYDQMPEPRYV+SMGSC
Sbjct: 61  MHMAAPRYDMDRFGVVFRASPRQADVMIVAGTLTNKMAPALRKVYDQMPEPRYVVSMGSC 120

Query: 130 ANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           ANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQKKI+R   ++
Sbjct: 121 ANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKIKREKRLR 175


>gi|126323645|ref|XP_001373250.1| PREDICTED: hypothetical protein [Monodelphis domestica]
          Length = 304

 Score =  252 bits (645), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 115/147 (78%), Positives = 129/147 (87%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           +++T +D L+ WAR  SL  MTFGLACCAVEMM  + PRYD++RFG   RASPRQSDVMI
Sbjct: 153 YVITKLDDLINWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQSDVMI 212

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGTLTNKMA ALR+VYDQMPEPRYV+SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP
Sbjct: 213 VAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 272

Query: 158 GCPPTAEALIYGILLLQKKIRRVGNVK 184
           GCPPTAEAL+YGIL LQKKI+R   ++
Sbjct: 273 GCPPTAEALLYGILQLQKKIKREKRLR 299


>gi|117926908|ref|YP_867525.1| NADH-quinone oxidoreductase subunit beta [Magnetococcus sp. MC-1]
 gi|238065166|sp|A0LDS6|NUOB_MAGSM RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|117610664|gb|ABK46119.1| NADH dehydrogenase subunit B [Magnetococcus sp. MC-1]
          Length = 167

 Score =  252 bits (645), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 116/158 (73%), Positives = 133/158 (84%)

Query: 26  FSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA 85
              +  E++ +GFL+TS D+LV W R+ S+  MTFGLACCAVEMM A   RYDL+RFG  
Sbjct: 2   IEELHQEVSDRGFLLTSADKLVNWGRSMSMWPMTFGLACCAVEMMNAGASRYDLDRFGVV 61

Query: 86  PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRG 145
            R SPRQSDV+IVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRG
Sbjct: 62  FRGSPRQSDVIIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRG 121

Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           CDRI+PVD+Y+PGCPPTAEA++YGI+ LQKKI R G V
Sbjct: 122 CDRILPVDVYIPGCPPTAEAVMYGIMQLQKKINREGQV 159


>gi|294083712|ref|YP_003550469.1| NADH:ubiquinone oxidoreductase 20 kD subunit and related Fe-S
           oxidoreductase [Candidatus Puniceispirillum marinum
           IMCC1322]
 gi|292663284|gb|ADE38385.1| NADH:ubiquinone oxidoreductase 20 kD subunit and related Fe-S
           oxidoreductase [Candidatus Puniceispirillum marinum
           IMCC1322]
          Length = 182

 Score =  252 bits (645), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 119/178 (66%), Positives = 141/178 (79%), Gaps = 3/178 (1%)

Query: 9   KIISGQSSCSLEK---VDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACC 65
            +I   ++  +      DA    +  EIT++GF++   D+L  WAR+GSL  MTFGLACC
Sbjct: 2   GVIDPYNAPPIPPGADQDAILKAVGDEITNRGFVIAKADKLFNWARSGSLWPMTFGLACC 61

Query: 66  AVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVIS 125
           AVEMM ++  RYD++R+G   R SPRQSDVMIVAGTLTNKMA ALRRVYDQMPEPR+V+S
Sbjct: 62  AVEMMHSAASRYDMDRYGMLFRPSPRQSDVMIVAGTLTNKMAPALRRVYDQMPEPRWVLS 121

Query: 126 MGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           MGSCANGGGYYHYSY+VVRGCDRIVPVD+YVPGCPPTAEALIYG+L LQKKIRR   +
Sbjct: 122 MGSCANGGGYYHYSYAVVRGCDRIVPVDVYVPGCPPTAEALIYGLLQLQKKIRRTATI 179


>gi|254436528|ref|ZP_05050022.1| NADH-quinone oxidoreductase, B subunit subfamily [Octadecabacter
           antarcticus 307]
 gi|198251974|gb|EDY76288.1| NADH-quinone oxidoreductase, B subunit subfamily [Octadecabacter
           antarcticus 307]
          Length = 177

 Score =  252 bits (645), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 132/161 (81%), Positives = 141/161 (87%)

Query: 23  DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82
           D     ++ E+T KGFLVTS   L+ WARTGSL WMTFGLACCAVEMM  SMPRYD ERF
Sbjct: 15  DVATQDLNHELTDKGFLVTSSADLINWARTGSLHWMTFGLACCAVEMMHTSMPRYDAERF 74

Query: 83  GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142
           G APRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSV
Sbjct: 75  GIAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSV 134

Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           VRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQ+K+RR G +
Sbjct: 135 VRGCDRIVPVDIYVPGCPPTAEALLYGILQLQRKMRRTGTI 175


>gi|126729549|ref|ZP_01745362.1| NADH dehydrogenase subunit B [Sagittula stellata E-37]
 gi|126709668|gb|EBA08721.1| NADH dehydrogenase subunit B [Sagittula stellata E-37]
          Length = 174

 Score =  252 bits (645), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 129/173 (74%), Positives = 150/173 (86%), Gaps = 1/173 (0%)

Query: 11  ISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMM 70
           ++G ++  +++  A    ++ E+  KGFL+TS + ++ WARTGSL WMTFGLACCAVEMM
Sbjct: 1   MTGANTAGVDREVATQD-LNRELQDKGFLLTSTEDIINWARTGSLHWMTFGLACCAVEMM 59

Query: 71  QASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCA 130
             SMPRYDLERFG APRASPRQSD+MIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCA
Sbjct: 60  HTSMPRYDLERFGTAPRASPRQSDLMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCA 119

Query: 131 NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           NGGGYYHYSYSVVRGCDR+VPVD+YVPGCPPTAEAL+YGI+ LQKKIRR G +
Sbjct: 120 NGGGYYHYSYSVVRGCDRVVPVDVYVPGCPPTAEALLYGIMALQKKIRRTGTL 172


>gi|149184638|ref|ZP_01862956.1| NADH dehydrogenase subunit B [Erythrobacter sp. SD-21]
 gi|148831958|gb|EDL50391.1| NADH dehydrogenase subunit B [Erythrobacter sp. SD-21]
          Length = 168

 Score =  252 bits (644), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 130/167 (77%), Positives = 147/167 (88%), Gaps = 1/167 (0%)

Query: 19  LEKVDAD-FSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRY 77
           + K DAD F+ + +E+  KGFLVTS + L  WARTGSL WMTFGLACCAVEM+  +MPRY
Sbjct: 1   MRKPDADYFNALQTEVNDKGFLVTSTEDLFQWARTGSLWWMTFGLACCAVEMIHVNMPRY 60

Query: 78  DLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137
           D+ERFG APRASPRQSDVMIVAGTL NKMA ALR+VYDQM EP+YVISMGSCANGGGYYH
Sbjct: 61  DMERFGVAPRASPRQSDVMIVAGTLCNKMAPALRKVYDQMSEPKYVISMGSCANGGGYYH 120

Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           YSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG++ LQ+KIRRVG ++
Sbjct: 121 YSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGVMQLQRKIRRVGTIE 167


>gi|254450431|ref|ZP_05063868.1| NADH dehydrogenase i, b subunit [Octadecabacter antarcticus 238]
 gi|198264837|gb|EDY89107.1| NADH dehydrogenase i, b subunit [Octadecabacter antarcticus 238]
          Length = 184

 Score =  252 bits (644), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 132/161 (81%), Positives = 141/161 (87%)

Query: 23  DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82
           D     ++ E+T KGFLVTS   L+ WARTGSL WMTFGLACCAVEMM  SMPRYD ERF
Sbjct: 22  DVATQDLNKELTDKGFLVTSSADLINWARTGSLHWMTFGLACCAVEMMHTSMPRYDAERF 81

Query: 83  GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142
           G APRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSV
Sbjct: 82  GIAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSV 141

Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           VRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQ+K+RR G +
Sbjct: 142 VRGCDRIVPVDIYVPGCPPTAEALLYGILQLQRKMRRTGTI 182


>gi|296283830|ref|ZP_06861828.1| NADH dehydrogenase subunit B [Citromicrobium bathyomarinum JL354]
          Length = 192

 Score =  252 bits (644), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 128/179 (71%), Positives = 149/179 (83%), Gaps = 1/179 (0%)

Query: 7   NQKIISGQSSCSLEKVDAD-FSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACC 65
           N ++        + + D+D F+ + +E+  KGFLVTS ++L  WARTGSL WMTFGLACC
Sbjct: 13  NPQMQPAAQPGEVRQPDSDYFNALQTEVNDKGFLVTSTEELFQWARTGSLWWMTFGLACC 72

Query: 66  AVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVIS 125
           AVEM+  +MPRYD+ERFG APRASPRQSDVMIVAGTL NKMA ALR+VYDQM  P+YVIS
Sbjct: 73  AVEMIHVNMPRYDMERFGVAPRASPRQSDVMIVAGTLCNKMAPALRKVYDQMSNPKYVIS 132

Query: 126 MGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           MGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG++ LQ+KIRR G V+
Sbjct: 133 MGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGVMQLQRKIRRSGTVE 191


>gi|186920122|ref|YP_001874776.1| NADH dehydrogenase subunit 10 [Hemiselmis andersenii]
 gi|186461068|gb|ACC78230.1| NADH dehydrogenase subunit 10 [Hemiselmis andersenii]
          Length = 182

 Score =  252 bits (644), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 113/153 (73%), Positives = 130/153 (84%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP 90
           + +    F+++ +D L+ WAR GSL  MTFGLACCAVEMM A   RYD +RFG   RASP
Sbjct: 24  TTMLKTEFVISKLDDLLNWARRGSLWPMTFGLACCAVEMMHAGASRYDFDRFGIIFRASP 83

Query: 91  RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150
           RQSDVMIVAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSY+VVRGCDR+V
Sbjct: 84  RQSDVMIVAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYAVVRGCDRVV 143

Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           PVDIYVPGCPPTAEAL+YGI+ LQKKI++  N+
Sbjct: 144 PVDIYVPGCPPTAEALLYGIVQLQKKIKQNKNL 176


>gi|197097452|ref|NP_001126953.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 7,
           mitochondrial precursor [Pongo abelii]
 gi|269969393|sp|P0CB83|NDUS7_PONAB RecName: Full=NADH dehydrogenase [ubiquinone] iron-sulfur protein
           7, mitochondrial; AltName: Full=Complex I-20kD;
           Short=CI-20kD; AltName: Full=NADH-ubiquinone
           oxidoreductase 20 kDa subunit; Flags: Precursor
 gi|55733271|emb|CAH93318.1| hypothetical protein [Pongo abelii]
          Length = 213

 Score =  252 bits (644), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 116/179 (64%), Positives = 138/179 (77%)

Query: 6   VNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACC 65
           V+Q + +   S +   +    +      +   ++V  +D L+ WAR  SL  MTFGLACC
Sbjct: 30  VHQSVATDGPSSTQPALPKARAVAPKPSSRGEYVVAKLDDLINWARRSSLWPMTFGLACC 89

Query: 66  AVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVIS 125
           AVEMM  + PRYD++RFG   RASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYV+S
Sbjct: 90  AVEMMHMAAPRYDMDRFGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVVS 149

Query: 126 MGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           MGSCANGGGYYHYSYSVVRGCDRIVPVDIY+PGCPPTAEAL+YGIL LQ+KI+R   ++
Sbjct: 150 MGSCANGGGYYHYSYSVVRGCDRIVPVDIYIPGCPPTAEALLYGILQLQRKIKRERRLQ 208


>gi|83311885|ref|YP_422149.1| NADH dehydrogenase subunit B [Magnetospirillum magneticum AMB-1]
 gi|123541537|sp|Q2W3I5|NUOB_MAGMM RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|82946726|dbj|BAE51590.1| NADH:ubiquinone oxidoreductase 20 kD subunit and related Fe-S
           oxidoreductase [Magnetospirillum magneticum AMB-1]
          Length = 186

 Score =  252 bits (643), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 124/167 (74%), Positives = 139/167 (83%)

Query: 17  CSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPR 76
                 DA    +++EI+ KGF++ SVD +V WARTGSL  MTFGLACCAVEMM A   R
Sbjct: 18  PPGPAQDALLKAVTTEISDKGFVLASVDAVVNWARTGSLWPMTFGLACCAVEMMHAGCSR 77

Query: 77  YDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY 136
           YD++RFG   R SPRQSD+MIVAGTLTNKMA ALRRVYDQM EPR+VISMGSCANGGGYY
Sbjct: 78  YDMDRFGVVFRPSPRQSDLMIVAGTLTNKMAPALRRVYDQMAEPRWVISMGSCANGGGYY 137

Query: 137 HYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           HYSYSVVRGCDRIVPVDIYVPGCPP+AEAL+YGIL LQKKIRR G++
Sbjct: 138 HYSYSVVRGCDRIVPVDIYVPGCPPSAEALMYGILQLQKKIRRTGSI 184


>gi|329850728|ref|ZP_08265573.1| NADH-quinone oxidoreductase subunit B [Asticcacaulis biprosthecum
           C19]
 gi|328841043|gb|EGF90614.1| NADH-quinone oxidoreductase subunit B [Asticcacaulis biprosthecum
           C19]
          Length = 184

 Score =  252 bits (643), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 133/162 (82%), Positives = 149/162 (91%)

Query: 23  DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82
           D  F  +S+E+  KGFLV S D ++TWARTGSLMWMTFGLACCAVEMMQASMPRYD+ERF
Sbjct: 22  DKFFESVSAELDAKGFLVASADDVITWARTGSLMWMTFGLACCAVEMMQASMPRYDMERF 81

Query: 83  GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142
           G APRASPRQSD+MIVAGTLTNKMA ALR+VYDQMP+PRYV+SMGSCANGGGYYHYSYSV
Sbjct: 82  GMAPRASPRQSDLMIVAGTLTNKMAPALRKVYDQMPDPRYVLSMGSCANGGGYYHYSYSV 141

Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           VRGCDRIVPVD+YVPGCPP+AEAL+YG+L LQKKIRR GN++
Sbjct: 142 VRGCDRIVPVDVYVPGCPPSAEALLYGLLQLQKKIRRTGNIR 183


>gi|308321280|gb|ADO27792.1| mitochondrial NADH dehydrogenase iron-sulfur protein 7 [Ictalurus
           furcatus]
          Length = 217

 Score =  252 bits (643), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 119/166 (71%), Positives = 137/166 (82%), Gaps = 1/166 (0%)

Query: 20  EKVDADFSRISSEITHKG-FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78
           EK      + +S ++ KG +++T +D LV WAR  SL  MTFGLACCAVEMM  + PRYD
Sbjct: 47  EKSTVVALKPTSAVSSKGEYVITKLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPRYD 106

Query: 79  LERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY 138
           ++RFG   RASPRQ+DVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHY
Sbjct: 107 MDRFGVVFRASPRQADVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHY 166

Query: 139 SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           SYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG L LQ+KI+R   ++
Sbjct: 167 SYSVVRGCDRIVPVDIYVPGCPPTAEALLYGTLQLQRKIKREKKMR 212


>gi|66512193|ref|XP_392437.2| PREDICTED: probable NADH dehydrogenase [ubiquinone] iron-sulfur
           protein 7, mitochondrial [Apis mellifera]
          Length = 223

 Score =  252 bits (643), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 110/173 (63%), Positives = 136/173 (78%)

Query: 12  SGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQ 71
           + +SS   +     +S   +      + V  +D ++ W R GS+  +TFGLACCAVEMM 
Sbjct: 46  TSESSLPEKAKKIPYSPFQNTNNLAEYAVARLDDILNWGRKGSIWPLTFGLACCAVEMMH 105

Query: 72  ASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCAN 131
            + PRYD++R+G   RASPRQ+DV+IVAGTLTNKMA ALR++YDQMPEPR+VISMGSCAN
Sbjct: 106 IAAPRYDMDRYGVVFRASPRQADVIIVAGTLTNKMAPALRKIYDQMPEPRWVISMGSCAN 165

Query: 132 GGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           GGGYYHYSYSVVRGCDRI+PVDIYVPGCPPTAEAL+YGIL LQKKI+R+  ++
Sbjct: 166 GGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALMYGILQLQKKIKRMKTLQ 218


>gi|11466592|ref|NP_066482.1| NADH dehydrogenase subunit 10 [Rhodomonas salina]
 gi|10444179|gb|AAG17753.1|AF288090_29 NADH dehydrogenase subunit 10 [Rhodomonas salina]
          Length = 158

 Score =  252 bits (643), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 112/152 (73%), Positives = 129/152 (84%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           +    F+++ +D L+ WAR GSL  MTFGLACCAVEMM A   RYD +RFG   RASPRQ
Sbjct: 2   LNKTKFVISKIDDLLNWARRGSLWPMTFGLACCAVEMMHAGASRYDFDRFGIIFRASPRQ 61

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           SD+MIVAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYH+SYSVVRGCD+IVPV
Sbjct: 62  SDIMIVAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHFSYSVVRGCDKIVPV 121

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           D++VPGCPPTAEAL+YGIL LQKKI+R   V+
Sbjct: 122 DVFVPGCPPTAEALLYGILQLQKKIKRTKTVQ 153


>gi|146341114|ref|YP_001206162.1| NADH dehydrogenase subunit B [Bradyrhizobium sp. ORS278]
 gi|238055272|sp|A4YVL1|NUOB_BRASO RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|146193920|emb|CAL77937.1| NADH-quinone oxidoreductase chain B (NADH dehydrogenase I, chain B)
           (NDH-1, chain B) [Bradyrhizobium sp. ORS278]
          Length = 193

 Score =  252 bits (643), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 136/182 (74%), Positives = 153/182 (84%)

Query: 3   LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62
           +    + I+   +   +   D  F  +  E++ KGF V + D L+TWARTGSLMWMTFGL
Sbjct: 11  IAPAPKGILDPATGRPVGAHDPYFLEVKHELSDKGFFVATADDLITWARTGSLMWMTFGL 70

Query: 63  ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122
           ACCAVEMMQ SMPRYD+ERFGFAPRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRY
Sbjct: 71  ACCAVEMMQVSMPRYDVERFGFAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRY 130

Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
           VISMGSCANGGGYYHYSYSVVRGCDRIVP+DIYVPGCPPTAEAL+YG+LLLQKKIRR G 
Sbjct: 131 VISMGSCANGGGYYHYSYSVVRGCDRIVPIDIYVPGCPPTAEALLYGVLLLQKKIRRTGT 190

Query: 183 VK 184
           ++
Sbjct: 191 IE 192


>gi|138519723|gb|AAI35870.1| hypothetical protein MGC147194 [Xenopus (Silurana) tropicalis]
          Length = 217

 Score =  252 bits (643), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 120/166 (72%), Positives = 140/166 (84%), Gaps = 1/166 (0%)

Query: 20  EKVDADFSRISSEITHKG-FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78
           +K  A  ++ S   ++KG F++T +D+LV WAR  SL  MTFGLACCAVEMM  + PRYD
Sbjct: 47  QKSSAVTAKKSLLPSNKGEFVITKLDELVNWARRSSLWPMTFGLACCAVEMMHMAAPRYD 106

Query: 79  LERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY 138
           ++RFG   RASPRQ+DVM+VAGTLTNKMA ALR+VYDQMPEPRYV+SMGSCANGGGYYHY
Sbjct: 107 MDRFGVVFRASPRQADVMVVAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGYYHY 166

Query: 139 SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           SYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQKKI+R   ++
Sbjct: 167 SYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKIKREKRLR 212


>gi|46202360|ref|ZP_00053337.2| COG0377: NADH:ubiquinone oxidoreductase 20 kD subunit and related
           Fe-S oxidoreductases [Magnetospirillum magnetotacticum
           MS-1]
          Length = 186

 Score =  252 bits (643), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 124/167 (74%), Positives = 139/167 (83%)

Query: 17  CSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPR 76
                 DA    +++EI+ KGF++ SVD +V WARTGSL  MTFGLACCAVEMM A   R
Sbjct: 18  PPGPAQDALLKAVTTEISDKGFVLASVDAVVNWARTGSLWPMTFGLACCAVEMMHAGCSR 77

Query: 77  YDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY 136
           YD++RFG   R SPRQSD+MIVAGTLTNKMA ALRRVYDQM EPR+VISMGSCANGGGYY
Sbjct: 78  YDMDRFGVVFRPSPRQSDLMIVAGTLTNKMAPALRRVYDQMAEPRWVISMGSCANGGGYY 137

Query: 137 HYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           HYSYSVVRGCDRIVPVDIYVPGCPP+AEAL+YGIL LQKKIRR G++
Sbjct: 138 HYSYSVVRGCDRIVPVDIYVPGCPPSAEALMYGILQLQKKIRRTGSI 184


>gi|254461551|ref|ZP_05074967.1| NADH dehydrogenase-ubiquinone oxidoreductase, chain b
           [Rhodobacterales bacterium HTCC2083]
 gi|206678140|gb|EDZ42627.1| NADH dehydrogenase-ubiquinone oxidoreductase, chain b
           [Rhodobacteraceae bacterium HTCC2083]
          Length = 181

 Score =  252 bits (643), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 130/173 (75%), Positives = 147/173 (84%)

Query: 11  ISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMM 70
            S   + +    D   + +++E+  KGFL+TS D ++ WARTGSL WMTFGLACCAVEMM
Sbjct: 7   TSTGIATAGGDRDHGTAALNAELADKGFLLTSTDDIINWARTGSLHWMTFGLACCAVEMM 66

Query: 71  QASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCA 130
             SMPRYDLERFG APRASPRQSD+MIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCA
Sbjct: 67  HTSMPRYDLERFGTAPRASPRQSDLMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCA 126

Query: 131 NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGI+ LQ+K+RR G +
Sbjct: 127 NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGIMQLQRKMRRTGTI 179


>gi|194212381|ref|XP_001503839.2| PREDICTED: similar to PSST subunit of the NADH: ubiquinone
           oxidoreductase complex [Equus caballus]
          Length = 259

 Score =  252 bits (643), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 119/174 (68%), Positives = 140/174 (80%), Gaps = 1/174 (0%)

Query: 12  SGQSSCSLEKVDADFSRISSEITHKG-FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMM 70
              +  ++ K  A   + ++  + +G ++VT +D LV WAR  SL  MTFGLACCAVEMM
Sbjct: 81  PSSTQPAMSKAGAVVPKPTALPSSRGEYVVTKLDDLVNWARRSSLWPMTFGLACCAVEMM 140

Query: 71  QASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCA 130
             + PRYD++RFG   RASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYV+SMGSCA
Sbjct: 141 HMAAPRYDMDRFGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCA 200

Query: 131 NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQ+KI+R   ++
Sbjct: 201 NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQRKIKREKRLR 254


>gi|11466535|ref|NP_044784.1| NADH dehydrogenase subunit 10 [Reclinomonas americana]
 gi|6647649|sp|O21272|NDUS7_RECAM RecName: Full=NADH-ubiquinone oxidoreductase 20 kDa subunit;
           AltName: Full=NADH dehydrogenase subunit 10
 gi|2258365|gb|AAD11899.1| NADH dehydrogenase subunit 10 [Reclinomonas americana]
          Length = 182

 Score =  252 bits (643), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 115/158 (72%), Positives = 132/158 (83%)

Query: 26  FSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA 85
           F  ++++     F+V+ +D+LV WAR GSL  MTFGLACCAVEMM ++  RYDL+RFG  
Sbjct: 19  FMILNNKQNKTEFIVSKMDELVNWARKGSLWPMTFGLACCAVEMMHSAASRYDLDRFGII 78

Query: 86  PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRG 145
            R SPRQSDVMIVAGTLTNKMA ALR+VYDQM EPR+V+SMGSCANGGGYYHYSYSVVRG
Sbjct: 79  FRPSPRQSDVMIVAGTLTNKMAPALRKVYDQMSEPRWVVSMGSCANGGGYYHYSYSVVRG 138

Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           CDRIVPVDIYVPGCPPTAEAL+YG+L LQKKI+R    
Sbjct: 139 CDRIVPVDIYVPGCPPTAEALLYGLLQLQKKIKRSRKT 176


>gi|114799608|ref|YP_760447.1| NADH dehydrogenase subunit B [Hyphomonas neptunium ATCC 15444]
 gi|122942427|sp|Q0C1E6|NUOB_HYPNA RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|114739782|gb|ABI77907.1| NADH-quinone oxidoreductase, B subunit [Hyphomonas neptunium ATCC
           15444]
          Length = 190

 Score =  252 bits (643), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 128/171 (74%), Positives = 142/171 (83%)

Query: 14  QSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQAS 73
                    D  +S +S ++  KG+   + D L++WARTGSLMWMTFGLACCAVEMM A 
Sbjct: 19  DGGFKPGNDDPFYSGLSDQLADKGYFTAAADDLISWARTGSLMWMTFGLACCAVEMMHAG 78

Query: 74  MPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGG 133
            PRYDLERFG APR SPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGG
Sbjct: 79  NPRYDLERFGMAPRGSPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGG 138

Query: 134 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           GYYHYSYSVVRGCDRIVPVDIY+PGCPPTAEAL+YG L LQKKIRR G+++
Sbjct: 139 GYYHYSYSVVRGCDRIVPVDIYIPGCPPTAEALVYGFLQLQKKIRREGSIE 189


>gi|409251|gb|AAA03036.1| NADH dehydrogenase [Paracoccus denitrificans]
          Length = 174

 Score =  252 bits (643), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 128/161 (79%), Positives = 143/161 (88%)

Query: 23  DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82
           D   + ++ E+  KGFL+T+ + ++ WAR GSL WMTFGLACCAVEMMQ SMPRYDLERF
Sbjct: 12  DLATAELNRELQDKGFLLTTTEDIINWARNGSLHWMTFGLACCAVEMMQTSMPRYDLERF 71

Query: 83  GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142
           G APRASPRQSD+MIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSV
Sbjct: 72  GTAPRASPRQSDLMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSV 131

Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           VRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQ++IRR G +
Sbjct: 132 VRGCDRIVPVDIYVPGCPPTAEALLYGILQLQRRIRRTGTL 172


>gi|47217431|emb|CAG00791.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 219

 Score =  252 bits (643), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 112/151 (74%), Positives = 130/151 (86%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
           +   +++T +D LV WAR  SL  MTFGLACCAVEMM  + PRYD++RFG   RASPRQ+
Sbjct: 64  SKGEYVITKLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQA 123

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD 153
           DVMIVAGTLTNKMA ALR+VY+QMPEPRYVISMGSCANGGGYYHYSY+VVRGCDRIVPVD
Sbjct: 124 DVMIVAGTLTNKMAPALRKVYEQMPEPRYVISMGSCANGGGYYHYSYAVVRGCDRIVPVD 183

Query: 154 IYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           IYVPGCPPTAEAL+YG+L LQ+KI+R   ++
Sbjct: 184 IYVPGCPPTAEALLYGVLQLQRKIKREKKLR 214


>gi|268370120|ref|NP_001161241.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 7,
           mitochondrial [Nasonia vitripennis]
          Length = 217

 Score =  252 bits (643), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 107/170 (62%), Positives = 132/170 (77%), Gaps = 2/170 (1%)

Query: 15  SSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASM 74
            S  +EK     S    +     + +  +D L+ W R GS+  +TFGLACCAVEMM  + 
Sbjct: 45  PSKPIEK--ESISPFPKKTNVVEYAMARLDDLLNWGRKGSMWPLTFGLACCAVEMMHIAA 102

Query: 75  PRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGG 134
           PRYD++RFG   RASPR +DV+IVAGT+TNKMA ALR+VYDQMP+P++VISMGSCANGGG
Sbjct: 103 PRYDMDRFGVVFRASPRHADVIIVAGTVTNKMAPALRKVYDQMPDPKWVISMGSCANGGG 162

Query: 135 YYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           YYHYSYSVVRGCDRI+PVDIYVPGCPPTAEAL+YG+L LQKK++R+   +
Sbjct: 163 YYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALLYGVLQLQKKVKRMETTQ 212


>gi|13543603|gb|AAH05954.1| NADH dehydrogenase (ubiquinone) Fe-S protein 7, 20kDa
           (NADH-coenzyme Q reductase) [Homo sapiens]
 gi|84105526|gb|AAI11518.1| NDUFS7 protein [Homo sapiens]
 gi|325464357|gb|ADZ15949.1| NADH dehydrogenase (ubiquinone) Fe-S protein 7, 20kDa
           (NADH-coenzyme Q reductase) [synthetic construct]
          Length = 213

 Score =  252 bits (643), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 117/179 (65%), Positives = 138/179 (77%)

Query: 6   VNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACC 65
           V+Q + +   S +   +    +      +   ++V  +D LV WAR  SL  MTFGLACC
Sbjct: 30  VHQSVATDGPSSTQPALPKARAVAPKPSSRGEYVVAKLDDLVNWARRSSLWPMTFGLACC 89

Query: 66  AVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVIS 125
           AVEMM  + PRYD++RFG   RASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYV+S
Sbjct: 90  AVEMMHMAAPRYDMDRFGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVVS 149

Query: 126 MGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           MGSCANGGGYYHYSYSVVRGCDRIVPVDIY+PGCPPTAEAL+YGIL LQ+KI+R   ++
Sbjct: 150 MGSCANGGGYYHYSYSVVRGCDRIVPVDIYIPGCPPTAEALLYGILQLQRKIKRERRLQ 208


>gi|222148275|ref|YP_002549232.1| NADH dehydrogenase subunit B [Agrobacterium vitis S4]
 gi|238065049|sp|B9JVE6|NUOB_AGRVS RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|221735263|gb|ACM36226.1| NADH ubiqionone oxidoreductase chain B [Agrobacterium vitis S4]
          Length = 195

 Score =  251 bits (642), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 135/183 (73%), Positives = 151/183 (82%), Gaps = 1/183 (0%)

Query: 3   LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62
           +    + I+   +   +      F  I+ E+  KGFLVTS   L+TWARTGSLMWM FGL
Sbjct: 12  VAPQPKGILDPATGKPVGNDSTFFGEINDELADKGFLVTSTQALITWARTGSLMWMQFGL 71

Query: 63  ACCAVE-MMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPR 121
           ACCAVE +MQAS PRYD+ERFG APRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPR
Sbjct: 72  ACCAVEGLMQASGPRYDMERFGVAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPR 131

Query: 122 YVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
           YVISMGSCANGGGYYHYSYSVVRGCDR+VPVDIYVPGCPPTAEAL+YG+LLLQKKIRR G
Sbjct: 132 YVISMGSCANGGGYYHYSYSVVRGCDRVVPVDIYVPGCPPTAEALLYGVLLLQKKIRRTG 191

Query: 182 NVK 184
            ++
Sbjct: 192 TIE 194


>gi|148284880|ref|YP_001248970.1| NADH dehydrogenase subunit B [Orientia tsutsugamushi str. Boryong]
 gi|189183819|ref|YP_001937604.1| NADH dehydrogenase subunit B [Orientia tsutsugamushi str. Ikeda]
 gi|218528000|sp|A5CES0|NUOB_ORITB RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|218528001|sp|B3CSG9|NUOB_ORITI RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|146740319|emb|CAM80723.1| NADH dehydrogenase I chain B [Orientia tsutsugamushi str. Boryong]
 gi|189180590|dbj|BAG40370.1| NADH dehydrogenase I chain B [Orientia tsutsugamushi str. Ikeda]
          Length = 171

 Score =  251 bits (642), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 112/156 (71%), Positives = 133/156 (85%)

Query: 29  ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88
            +  ++++GF++ +++ LV+WART SL  MTFGLACCA+EMMQ +  RYD++R+G   R 
Sbjct: 13  YNQNLSNQGFILANLENLVSWARTRSLWPMTFGLACCAIEMMQTAGSRYDMDRYGMLFRP 72

Query: 89  SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 148
           SPRQ+DVMIVAGTLTNKMA ALRRVYDQM EP++VISMGSCANGGGYYHYSYSVVRGCD+
Sbjct: 73  SPRQADVMIVAGTLTNKMAPALRRVYDQMTEPKWVISMGSCANGGGYYHYSYSVVRGCDK 132

Query: 149 IVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           IVPVDIYVPGCPPT EAL+YGIL LQKKI R   VK
Sbjct: 133 IVPVDIYVPGCPPTPEALLYGILQLQKKINRTQQVK 168


>gi|126727142|ref|ZP_01742979.1| NADH dehydrogenase subunit B [Rhodobacterales bacterium HTCC2150]
 gi|126703570|gb|EBA02666.1| NADH dehydrogenase subunit B [Rhodobacterales bacterium HTCC2150]
          Length = 176

 Score =  251 bits (642), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 123/155 (79%), Positives = 141/155 (90%)

Query: 29  ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88
           ++ E+  KGFL+TS + ++ WARTGSL WMTFGLACCAVEMM  +MPRYD+ERFG APRA
Sbjct: 20  LNRELQDKGFLLTSTEDIINWARTGSLHWMTFGLACCAVEMMHTAMPRYDMERFGTAPRA 79

Query: 89  SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 148
           SPRQSD+MIVAGTLTNKMA ALR+VYDQMPEPRYV+SMGSCANGGGYYHYSYSVVRGCDR
Sbjct: 80  SPRQSDLMIVAGTLTNKMAPALRKVYDQMPEPRYVLSMGSCANGGGYYHYSYSVVRGCDR 139

Query: 149 IVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           +VPVD+YVPGCPPTAEAL+YG+L LQ+KIRR G +
Sbjct: 140 VVPVDMYVPGCPPTAEALLYGLLQLQRKIRRTGTI 174


>gi|330813983|ref|YP_004358222.1| NADH-ubiquinone oxidoreductase chain B [Candidatus Pelagibacter sp.
           IMCC9063]
 gi|327487078|gb|AEA81483.1| NADH-ubiquinone oxidoreductase chain B [Candidatus Pelagibacter sp.
           IMCC9063]
          Length = 175

 Score =  251 bits (642), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 132/170 (77%), Positives = 148/170 (87%)

Query: 15  SSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASM 74
            +  L+ +  +F  ++ E T KGF+    D+L+ WARTGSL WMTFGLACCAVEMMQ SM
Sbjct: 5   PAEKLKDIPKEFREVAEEFTEKGFVTIGSDRLINWARTGSLHWMTFGLACCAVEMMQTSM 64

Query: 75  PRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGG 134
           PRYDLERFG APRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGG
Sbjct: 65  PRYDLERFGAAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGG 124

Query: 135 YYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           YYHYSYSVVRGCD+IVPVDIYVPGCPP+AEAL+YGIL LQKKIRR G+++
Sbjct: 125 YYHYSYSVVRGCDKIVPVDIYVPGCPPSAEALLYGILQLQKKIRREGSLQ 174


>gi|90417843|ref|ZP_01225755.1| NADH dehydrogenase I, B subunit [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90337515|gb|EAS51166.1| NADH dehydrogenase I, B subunit [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 194

 Score =  251 bits (642), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 139/193 (72%), Positives = 157/193 (81%), Gaps = 9/193 (4%)

Query: 1   MGLTTVNQKIISGQSSC---------SLEKVDADFSRISSEITHKGFLVTSVDQLVTWAR 51
           MGL   ++ +++   S               D   + +++E+  KGFLVTS + L+ WAR
Sbjct: 1   MGLIDTSRPLVAHAPSTDAGVAGPRTVAPAADPFVTDVNNELADKGFLVTSTEDLIQWAR 60

Query: 52  TGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALR 111
           TGSLMWMTFGLACCAVEMMQ SMPRYD ERFGFAPRASPRQSDVMIVAGTLTNKMA ALR
Sbjct: 61  TGSLMWMTFGLACCAVEMMQMSMPRYDAERFGFAPRASPRQSDVMIVAGTLTNKMAPALR 120

Query: 112 RVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171
           +VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR+VPVDIYVPGCPPTAEAL+YG+L
Sbjct: 121 KVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRVVPVDIYVPGCPPTAEALLYGVL 180

Query: 172 LLQKKIRRVGNVK 184
           LLQKKIRR G ++
Sbjct: 181 LLQKKIRRTGTIE 193


>gi|260428201|ref|ZP_05782180.1| NADH-quinone oxidoreductase subunit b [Citreicella sp. SE45]
 gi|260422693|gb|EEX15944.1| NADH-quinone oxidoreductase subunit b [Citreicella sp. SE45]
          Length = 175

 Score =  251 bits (642), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 131/174 (75%), Positives = 152/174 (87%), Gaps = 1/174 (0%)

Query: 10  IISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEM 69
           +++G ++   ++ +     ++ E+  KGFL+TSVD ++ WARTGSL WMTFGLACCA+EM
Sbjct: 1   MMTGPTTAGPDR-EVATQALNRELQDKGFLLTSVDDVINWARTGSLHWMTFGLACCAIEM 59

Query: 70  MQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSC 129
           MQ SMPRYDLERFG APRASPRQSD+MIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSC
Sbjct: 60  MQTSMPRYDLERFGTAPRASPRQSDLMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSC 119

Query: 130 ANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           ANGGGYYHYSYSVVRGCDRIVPVD+YVPGCPPTAEAL+YGI+ LQKKIRR G +
Sbjct: 120 ANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALLYGIMALQKKIRRTGTI 173


>gi|218528070|sp|Q2NA61|NUOB_ERYLH RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
          Length = 187

 Score =  251 bits (642), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 127/181 (70%), Positives = 148/181 (81%), Gaps = 3/181 (1%)

Query: 7   NQKIISGQSSCSLEKVDAD---FSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLA 63
           N+ +    ++   E    D   F+ + +E+  KGFLVTS + L  WARTGSL WMTFGLA
Sbjct: 6   NRALHDAPTARGGEVRQPDGDYFNALQTEVNDKGFLVTSTEDLFQWARTGSLWWMTFGLA 65

Query: 64  CCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYV 123
           CCAVEM+  +MPRYD+ERFG APRASPRQSDVMIVAGTL NKMA ALR+VYDQM +P+YV
Sbjct: 66  CCAVEMIHVNMPRYDMERFGAAPRASPRQSDVMIVAGTLCNKMAPALRKVYDQMSDPKYV 125

Query: 124 ISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           ISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG++ LQ+KIRR G +
Sbjct: 126 ISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGVMQLQRKIRRSGTI 185

Query: 184 K 184
           +
Sbjct: 186 E 186


>gi|149914578|ref|ZP_01903108.1| NADH dehydrogenase subunit B [Roseobacter sp. AzwK-3b]
 gi|149811371|gb|EDM71206.1| NADH dehydrogenase subunit B [Roseobacter sp. AzwK-3b]
          Length = 177

 Score =  251 bits (642), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 130/158 (82%), Positives = 142/158 (89%)

Query: 26  FSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA 85
              ++ E+  KGFLVTS + ++ WARTGSL WMTFGLACCAVEMM ASMPRYDLERFG A
Sbjct: 18  TQDLNRELQDKGFLVTSTEDIINWARTGSLHWMTFGLACCAVEMMHASMPRYDLERFGTA 77

Query: 86  PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRG 145
           PRASPRQSD+MIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRG
Sbjct: 78  PRASPRQSDLMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRG 137

Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           CDRIVPVDIYVPGCPPTAEAL+YGI+ LQ+KIRR G +
Sbjct: 138 CDRIVPVDIYVPGCPPTAEALVYGIMQLQRKIRRTGTI 175


>gi|332023286|gb|EGI63540.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 7,
           mitochondrial [Acromyrmex echinatior]
          Length = 224

 Score =  251 bits (642), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 112/180 (62%), Positives = 132/180 (73%)

Query: 5   TVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLAC 64
                +   ++    +     +S          + +   D L+ W R GSL  MTFGLAC
Sbjct: 40  ATETSVQEAKTQLPEKSKVEPYSPFQKPSNMAEYALARADDLLNWGRKGSLWPMTFGLAC 99

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           CAVEMM  + PRYD++RFG   RASPRQSDV+IVAGTLTNKMA ALRR+YDQMPEPR+VI
Sbjct: 100 CAVEMMHIAAPRYDMDRFGVVFRASPRQSDVIIVAGTLTNKMAPALRRIYDQMPEPRWVI 159

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           SMGSCANGGGYYHYSYSVVRGCDRI+PVDIYVPGCPPTAEAL+YG+L LQKKI+R+   +
Sbjct: 160 SMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALLYGVLQLQKKIKRMQTTQ 219


>gi|149202673|ref|ZP_01879645.1| NADH dehydrogenase subunit B [Roseovarius sp. TM1035]
 gi|149143955|gb|EDM31989.1| NADH dehydrogenase subunit B [Roseovarius sp. TM1035]
          Length = 177

 Score =  251 bits (642), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 129/158 (81%), Positives = 143/158 (90%)

Query: 26  FSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA 85
              +++E+  KGFL+TS + ++ WARTGSL WMTFGLACCAVEMM  +MPRYD+ERFGFA
Sbjct: 18  TQALNAELQDKGFLLTSTEDIINWARTGSLHWMTFGLACCAVEMMHTAMPRYDVERFGFA 77

Query: 86  PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRG 145
           PRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRG
Sbjct: 78  PRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRG 137

Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           CDRIVPVDIYVPGCPPTAEAL+YGIL LQ+KIRR G +
Sbjct: 138 CDRIVPVDIYVPGCPPTAEALVYGILQLQRKIRRTGTI 175


>gi|89067783|ref|ZP_01155237.1| NADH dehydrogenase beta subunit [Oceanicola granulosus HTCC2516]
 gi|89046753|gb|EAR52808.1| NADH dehydrogenase beta subunit [Oceanicola granulosus HTCC2516]
          Length = 204

 Score =  251 bits (642), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 130/174 (74%), Positives = 146/174 (83%)

Query: 10  IISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEM 69
           +    ++ +    +     ++ E+  KGFLVTS   ++ WARTGSL WMTFGLACCAVEM
Sbjct: 29  LTPYGANTAEGDKEVATQALNRELQDKGFLVTSTADIINWARTGSLHWMTFGLACCAVEM 88

Query: 70  MQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSC 129
           M +SMPRYDLERFG APRASPRQSD+MIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSC
Sbjct: 89  MHSSMPRYDLERFGTAPRASPRQSDLMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSC 148

Query: 130 ANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           ANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQ+KIRR G +
Sbjct: 149 ANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQRKIRRTGTI 202


>gi|198431614|ref|XP_002130919.1| PREDICTED: similar to NADH-ubiquinone oxidoreductase Fe-S protein 7
           [Ciona intestinalis]
          Length = 236

 Score =  251 bits (642), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 115/174 (66%), Positives = 139/174 (79%)

Query: 8   QKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAV 67
            K I  + +  L+ + ++ SR+ +  +   ++ T +D LV + RT SL  MTFGLACCAV
Sbjct: 36  DKKIETEPAQVLQPIRSEISRLKNADSRGEYIATRIDDLVNYVRTNSLWPMTFGLACCAV 95

Query: 68  EMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMG 127
           EMM  + PRYD++RFG   RASPRQSD+MIVAGTLTNKMA ALRRVYDQM +P++V+SMG
Sbjct: 96  EMMHFAAPRYDMDRFGVVFRASPRQSDLMIVAGTLTNKMAPALRRVYDQMADPKWVLSMG 155

Query: 128 SCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
           SCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG+L LQKK+RR  
Sbjct: 156 SCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGVLQLQKKVRRTK 209


>gi|315583009|ref|NP_001186841.1| NADH dehydrogenase (ubiquinone) Fe-S protein 7, (NADH-coenzyme Q
           reductase) [Danio rerio]
          Length = 217

 Score =  251 bits (642), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 121/166 (72%), Positives = 139/166 (83%), Gaps = 1/166 (0%)

Query: 20  EKVDADFSRISSEITHKG-FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78
           EK  A  ++ +S ++ KG +++T +D LV WAR  SL  MTFGLACCAVEMM  + PRYD
Sbjct: 47  EKSTALAAKPASAVSSKGEYVITKLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPRYD 106

Query: 79  LERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY 138
           ++RFG   RASPRQ+DVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHY
Sbjct: 107 MDRFGVVFRASPRQADVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHY 166

Query: 139 SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           SYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG L LQ+KI+R   +K
Sbjct: 167 SYSVVRGCDRIVPVDIYVPGCPPTAEALLYGTLQLQRKIKREKRMK 212


>gi|119589914|gb|EAW69508.1| NADH dehydrogenase (ubiquinone) Fe-S protein 7, 20kDa
           (NADH-coenzyme Q reductase), isoform CRA_b [Homo
           sapiens]
          Length = 224

 Score =  251 bits (642), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 117/179 (65%), Positives = 138/179 (77%)

Query: 6   VNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACC 65
           V+Q + +   S +   +    +      +   ++V  +D LV WAR  SL  MTFGLACC
Sbjct: 41  VHQSVATDGPSSTQPALPKARAVAPKPSSRGEYVVAKLDDLVNWARRSSLWPMTFGLACC 100

Query: 66  AVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVIS 125
           AVEMM  + PRYD++RFG   RASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYV+S
Sbjct: 101 AVEMMHMAAPRYDMDRFGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVVS 160

Query: 126 MGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           MGSCANGGGYYHYSYSVVRGCDRIVPVDIY+PGCPPTAEAL+YGIL LQ+KI+R   ++
Sbjct: 161 MGSCANGGGYYHYSYSVVRGCDRIVPVDIYIPGCPPTAEALLYGILQLQRKIKRERRLQ 219


>gi|148555890|ref|YP_001263472.1| NADH dehydrogenase subunit B [Sphingomonas wittichii RW1]
 gi|218528008|sp|A5VAL8|NUOB_SPHWW RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|148501080|gb|ABQ69334.1| NADH-quinone oxidoreductase, B subunit [Sphingomonas wittichii RW1]
          Length = 187

 Score =  251 bits (641), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 131/186 (70%), Positives = 148/186 (79%), Gaps = 2/186 (1%)

Query: 1   MGLTTVNQKIISGQSSCS--LEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWM 58
           MG+T  +             +      F  + +E+  KGFLVTS ++L  WARTGSL WM
Sbjct: 1   MGVTLDSALNPHKPEGFGEVVAPDPDYFKALQAEVNDKGFLVTSAEELFQWARTGSLWWM 60

Query: 59  TFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMP 118
           TFGLACCAVEM+  +MPRYDLERFG APRASPRQSDVMIVAGTL NKMA ALRRVYDQM 
Sbjct: 61  TFGLACCAVEMIHVNMPRYDLERFGAAPRASPRQSDVMIVAGTLCNKMAPALRRVYDQMS 120

Query: 119 EPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           EP+YVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGI+ LQ+KIR
Sbjct: 121 EPKYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGIMQLQRKIR 180

Query: 179 RVGNVK 184
           R+G ++
Sbjct: 181 RIGTLE 186


>gi|159031992|ref|NP_001103713.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 7,
           mitochondrial precursor [Pan troglodytes]
 gi|115502489|sp|Q0MQI0|NDUS7_PANTR RecName: Full=NADH dehydrogenase [ubiquinone] iron-sulfur protein
           7, mitochondrial; AltName: Full=Complex I-20kD;
           Short=CI-20kD; AltName: Full=NADH-ubiquinone
           oxidoreductase 20 kDa subunit; Flags: Precursor
 gi|111661826|gb|ABH12163.1| mitochondrial complex I subunit NDUFS7 [Pan troglodytes]
          Length = 213

 Score =  251 bits (641), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 117/180 (65%), Positives = 139/180 (77%)

Query: 5   TVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLAC 64
           +V+Q + +   S +   +    +      +   ++V  +D LV WAR  SL  MTFGLAC
Sbjct: 29  SVHQSVATDGPSSTQPALPKARAVAPKPSSRGEYVVAKLDDLVNWARRSSLWPMTFGLAC 88

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           CAVEMM  + PRYD++RFG   RASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYV+
Sbjct: 89  CAVEMMHMAAPRYDMDRFGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVV 148

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           SMGSCANGGGYYHYSYSVVRGCDRIVPVDIY+PGCPPTAEAL+YGIL LQ+KI+R   ++
Sbjct: 149 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYIPGCPPTAEALLYGILQLQRKIKRERRLQ 208


>gi|119384981|ref|YP_916037.1| NADH dehydrogenase subunit B [Paracoccus denitrificans PD1222]
 gi|218527939|sp|A1B497|NUOB_PARDP RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NADH
           dehydrogenase I, subunit 6; AltName: Full=NADH-quinone
           oxidoreductase subunit 6; Short=NQO6; AltName:
           Full=NDH-1 subunit B; AltName: Full=NDH-1, subunit 6
 gi|119374748|gb|ABL70341.1| NADH dehydrogenase subunit B [Paracoccus denitrificans PD1222]
          Length = 175

 Score =  251 bits (641), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 128/161 (79%), Positives = 143/161 (88%)

Query: 23  DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82
           D   + ++ E+  KGFL+T+ + ++ WAR GSL WMTFGLACCAVEMMQ SMPRYDLERF
Sbjct: 13  DLATAELNRELQDKGFLLTTTEDIINWARNGSLHWMTFGLACCAVEMMQTSMPRYDLERF 72

Query: 83  GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142
           G APRASPRQSD+MIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSV
Sbjct: 73  GTAPRASPRQSDLMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSV 132

Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           VRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQ++IRR G +
Sbjct: 133 VRGCDRIVPVDIYVPGCPPTAEALLYGILQLQRRIRRTGTL 173


>gi|198285499|gb|ACH85288.1| NADH-ubiquinone oxidoreductase Fe-S protein 7 [Salmo salar]
          Length = 215

 Score =  251 bits (641), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 114/151 (75%), Positives = 129/151 (85%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
           +   +++T +D LV WAR  SL  MTFGLACCAVEMM  + PRYD++RFG   RASPRQ+
Sbjct: 60  SKGEYVITKLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQA 119

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD 153
           DVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSY+VVRGCDRIVPVD
Sbjct: 120 DVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYAVVRGCDRIVPVD 179

Query: 154 IYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           IYVPGCPPTAEAL+YG L LQKKI+R   ++
Sbjct: 180 IYVPGCPPTAEALLYGTLQLQKKIKREKKMR 210


>gi|221108593|ref|XP_002170450.1| PREDICTED: similar to NADH-ubiquinone oxidoreductase Fe-S protein
           7, partial [Hydra magnipapillata]
          Length = 198

 Score =  251 bits (641), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 122/183 (66%), Positives = 139/183 (75%), Gaps = 1/183 (0%)

Query: 2   GLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFG 61
            +   +QK  +       E+  A  S+ S       F+V  VD LV WAR  SL  MTFG
Sbjct: 12  AVAKEDQKCTATSLVPYREQSTA-TSKPSLVSNAAEFVVAKVDDLVNWARRSSLWPMTFG 70

Query: 62  LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPR 121
           LACCAVEMM  + PRYD++RFG   RASPRQ+DVMIVAGTLTNKMA ALRRVYDQMPEPR
Sbjct: 71  LACCAVEMMHFAAPRYDMDRFGVVFRASPRQADVMIVAGTLTNKMAPALRRVYDQMPEPR 130

Query: 122 YVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
           +VISMGSCANGGGYYHYSY+VVRGCDR+VPVDIYVPGCPPTAEAL+YG+L LQKKI+R  
Sbjct: 131 WVISMGSCANGGGYYHYSYAVVRGCDRVVPVDIYVPGCPPTAEALLYGVLQLQKKIKRTR 190

Query: 182 NVK 184
            +K
Sbjct: 191 EIK 193


>gi|310816715|ref|YP_003964679.1| NADH-quinone oxidoreductase, B subunit [Ketogulonicigenium vulgare
           Y25]
 gi|308755450|gb|ADO43379.1| NADH-quinone oxidoreductase, B subunit [Ketogulonicigenium vulgare
           Y25]
          Length = 188

 Score =  251 bits (641), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 131/181 (72%), Positives = 147/181 (81%)

Query: 3   LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62
           L+T  Q  +    + +    D     +   +  KGFLVTS   ++ WARTGSL WMTFGL
Sbjct: 6   LSTGAQGSVQTGRNSAGADADHAALVLGRAVQDKGFLVTSTADIINWARTGSLHWMTFGL 65

Query: 63  ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122
           ACCAVEMMQ SMPRYDLERFG APRASPRQ+D+MIVAGTLTNKMA ALR+VYDQMPEPRY
Sbjct: 66  ACCAVEMMQLSMPRYDLERFGTAPRASPRQADLMIVAGTLTNKMAPALRKVYDQMPEPRY 125

Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
           VISMGSCANGGGYYHYSYSVVRGCDRIVPVD+YVPGCPPTAEAL+YGI+ LQ+KIRR G 
Sbjct: 126 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALLYGIMQLQRKIRRTGT 185

Query: 183 V 183
           +
Sbjct: 186 I 186


>gi|103486796|ref|YP_616357.1| NADH dehydrogenase subunit B [Sphingopyxis alaskensis RB2256]
 gi|122985072|sp|Q1GTJ8|NUOB_SPHAL RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|98976873|gb|ABF53024.1| NADH-quinone oxidoreductase, B subunit [Sphingopyxis alaskensis
           RB2256]
          Length = 177

 Score =  251 bits (641), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 126/171 (73%), Positives = 141/171 (82%)

Query: 14  QSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQAS 73
             +       + F  +S E+  KGFLVTS + L  WARTGSL WMTFGLACCAVEM+  +
Sbjct: 6   PVAPGTNPDQSFFDDLSGEVGDKGFLVTSTEDLFNWARTGSLWWMTFGLACCAVEMIHVN 65

Query: 74  MPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGG 133
           MPRYD+ERFG APRASPRQSDVMIVAGTL NKMA ALRRVYDQM  P+YVISMGSCANGG
Sbjct: 66  MPRYDMERFGVAPRASPRQSDVMIVAGTLCNKMAPALRRVYDQMSNPKYVISMGSCANGG 125

Query: 134 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG++ LQ+KIRR G ++
Sbjct: 126 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGVMQLQRKIRRTGTIE 176


>gi|299471504|emb|CBN79990.1| NUO10 homolog, NADH dehydrogenase (ubiquinone) subunit 10
           [Ectocarpus siliculosus]
          Length = 225

 Score =  251 bits (641), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 118/173 (68%), Positives = 135/173 (78%)

Query: 11  ISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMM 70
           +   +S  L + +     +        F+V+ VD LV WAR GSL  MTFGLACCAVEMM
Sbjct: 47  MRKPTSSELTRAENVDQLMQQGKGGVEFVVSKVDDLVNWARKGSLWPMTFGLACCAVEMM 106

Query: 71  QASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCA 130
            ++  RYDLERFG   RASPRQSDVMIVAGTL NKMA ALR+VYDQMPEPR+V+SMGSCA
Sbjct: 107 HSAASRYDLERFGMVFRASPRQSDVMIVAGTLCNKMAPALRKVYDQMPEPRWVVSMGSCA 166

Query: 131 NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG+L LQKKI+   ++
Sbjct: 167 NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGLLQLQKKIKGNKSL 219


>gi|297275661|ref|XP_002808210.1| PREDICTED: LOW QUALITY PROTEIN: NADH dehydrogenase [ubiquinone]
           iron-sulfur protein 7, mitochondrial-like [Macaca
           mulatta]
          Length = 362

 Score =  251 bits (641), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 118/179 (65%), Positives = 139/179 (77%)

Query: 6   VNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACC 65
           V+Q + +   S +   +    + +    +   ++V  +D LV WAR  SL  MTFGLACC
Sbjct: 179 VHQSVATDGPSSAQPALPKAGAMVPKPSSRGEYVVAKLDDLVNWARRSSLWPMTFGLACC 238

Query: 66  AVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVIS 125
           AVEMM  + PRYD++RFG   RASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVIS
Sbjct: 239 AVEMMHMAAPRYDMDRFGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVIS 298

Query: 126 MGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           MGSCANGGGYYHYSYSVVRGCDRIVPVDIY+PGCPPTAEAL+YG+L LQ+KI+R   V+
Sbjct: 299 MGSCANGGGYYHYSYSVVRGCDRIVPVDIYIPGCPPTAEALLYGVLQLQRKIKRERKVQ 357


>gi|254420093|ref|ZP_05033817.1| NADH-quinone oxidoreductase, B subunit subfamily [Brevundimonas sp.
           BAL3]
 gi|196186270|gb|EDX81246.1| NADH-quinone oxidoreductase, B subunit subfamily [Brevundimonas sp.
           BAL3]
          Length = 173

 Score =  251 bits (641), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 123/161 (76%), Positives = 143/161 (88%)

Query: 23  DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82
           D  F  ++ E+  +GFL  S+D ++TWARTGSLMWMTFGLACCAVEM+Q SMPR+D+ERF
Sbjct: 11  DKFFESVNMELGERGFLTASLDDVITWARTGSLMWMTFGLACCAVEMIQMSMPRFDVERF 70

Query: 83  GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142
           G APR SPR SD+MIVAGTLTNKMA A+R+VYDQMP+PRYV+SMGSCANGGGYYHYSYSV
Sbjct: 71  GMAPRGSPRHSDLMIVAGTLTNKMAPAIRKVYDQMPDPRYVVSMGSCANGGGYYHYSYSV 130

Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           VRGCDR+VPVD+YVPGCPPTAEAL+YG+L LQKKIRR G +
Sbjct: 131 VRGCDRVVPVDVYVPGCPPTAEALLYGLLQLQKKIRRTGTI 171


>gi|126736072|ref|ZP_01751816.1| NADH dehydrogenase beta subunit [Roseobacter sp. CCS2]
 gi|126714629|gb|EBA11496.1| NADH dehydrogenase beta subunit [Roseobacter sp. CCS2]
          Length = 176

 Score =  251 bits (641), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 131/155 (84%), Positives = 141/155 (90%)

Query: 29  ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88
           I+SE+  KGFLVTS   +V WARTGSL WMTFGLACCAVEMM  SMPRYDLERFG APRA
Sbjct: 20  INSELQDKGFLVTSTADIVNWARTGSLHWMTFGLACCAVEMMHTSMPRYDLERFGTAPRA 79

Query: 89  SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 148
           SPRQSD+MIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR
Sbjct: 80  SPRQSDLMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 139

Query: 149 IVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           IVPVD+YVPGCPPTAEAL+YGIL LQ+K+RR G +
Sbjct: 140 IVPVDVYVPGCPPTAEALLYGILQLQRKMRRTGTI 174


>gi|85703212|ref|ZP_01034316.1| NADH dehydrogenase beta subunit [Roseovarius sp. 217]
 gi|85672140|gb|EAQ26997.1| NADH dehydrogenase beta subunit [Roseovarius sp. 217]
          Length = 174

 Score =  251 bits (641), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 128/169 (75%), Positives = 147/169 (86%)

Query: 15  SSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASM 74
           ++ +    +     +++E+  KG+L+TS + ++ WARTGSL WMTFGLACCAVEMM  +M
Sbjct: 4   ANTAGPDREVATQALNAELQDKGYLLTSTEDIINWARTGSLHWMTFGLACCAVEMMHTAM 63

Query: 75  PRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGG 134
           PRYD+ERFGFAPRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGG
Sbjct: 64  PRYDVERFGFAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGG 123

Query: 135 YYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           YYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQ+KIRR G +
Sbjct: 124 YYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALVYGILQLQRKIRRTGTI 172


>gi|332185849|ref|ZP_08387596.1| NADH-quinone oxidoreductase, B subunit [Sphingomonas sp. S17]
 gi|332014207|gb|EGI56265.1| NADH-quinone oxidoreductase, B subunit [Sphingomonas sp. S17]
          Length = 194

 Score =  251 bits (641), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 126/171 (73%), Positives = 144/171 (84%)

Query: 14  QSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQAS 73
                ++     F  ++ E+T KGFLVTS ++L  WARTGSL WMTFGLACCAVEM+  +
Sbjct: 23  DGQAVIQPDQGFFDGLNGELTDKGFLVTSTEELFQWARTGSLWWMTFGLACCAVEMIHVN 82

Query: 74  MPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGG 133
           MPRYD+ERFG APRASPRQSDVMIVAGTL NKMA ALRRVYDQM  P+YVISMGSCANGG
Sbjct: 83  MPRYDMERFGAAPRASPRQSDVMIVAGTLCNKMAPALRRVYDQMSNPKYVISMGSCANGG 142

Query: 134 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG++ LQ+KIRR G+++
Sbjct: 143 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGVMQLQRKIRRAGSIE 193


>gi|157825617|ref|YP_001493337.1| NADH dehydrogenase subunit B [Rickettsia akari str. Hartford]
 gi|218528016|sp|A8GN54|NUOB_RICAH RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|157799575|gb|ABV74829.1| NADH dehydrogenase subunit B [Rickettsia akari str. Hartford]
          Length = 174

 Score =  251 bits (641), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 112/158 (70%), Positives = 135/158 (85%)

Query: 27  SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP 86
             +++EI+++GFL+T +D ++ WAR  SL  MTFGLACCAVEMMQA+  RYD++RFG   
Sbjct: 10  ELLNNEISNRGFLLTKIDDIIGWARAHSLWPMTFGLACCAVEMMQAASSRYDMDRFGMLF 69

Query: 87  RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGC 146
           R SPRQSD+MIVAGTLTNKMA ALR+VYDQM  P++V+SMGSCANGGGYYH+SYSVVRGC
Sbjct: 70  RPSPRQSDLMIVAGTLTNKMAPALRKVYDQMAVPKWVLSMGSCANGGGYYHFSYSVVRGC 129

Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           DRIVPVD+YVPGCPPTAEALIYG++ LQKKI+R    K
Sbjct: 130 DRIVPVDVYVPGCPPTAEALIYGLMQLQKKIKRTTGFK 167


>gi|326387461|ref|ZP_08209070.1| NADH dehydrogenase subunit B [Novosphingobium nitrogenifigens DSM
           19370]
 gi|326208117|gb|EGD58925.1| NADH dehydrogenase subunit B [Novosphingobium nitrogenifigens DSM
           19370]
          Length = 183

 Score =  250 bits (640), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 126/182 (69%), Positives = 149/182 (81%)

Query: 3   LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62
           +  +     +   +  L    A F  +++E++ KGFLVTS ++L  WARTGSL WMTFGL
Sbjct: 1   MNDMATSPATVGGANVLAPDQAFFDSLNAEVSDKGFLVTSTEELFQWARTGSLWWMTFGL 60

Query: 63  ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122
           ACCAVEM+  +MPRYD+ERFG APRASPRQSDVMIVAGTL NKMA ALR+VYDQM +P+Y
Sbjct: 61  ACCAVEMIHVNMPRYDMERFGVAPRASPRQSDVMIVAGTLCNKMAPALRKVYDQMSDPKY 120

Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
           VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG++ LQ+KIRR G 
Sbjct: 121 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGVMQLQRKIRRAGT 180

Query: 183 VK 184
           ++
Sbjct: 181 LE 182


>gi|115502488|sp|Q0MQH9|NDUS7_GORGO RecName: Full=NADH dehydrogenase [ubiquinone] iron-sulfur protein
           7, mitochondrial; AltName: Full=Complex I-20kD;
           Short=CI-20kD; AltName: Full=NADH-ubiquinone
           oxidoreductase 20 kDa subunit; Flags: Precursor
 gi|269969394|sp|P0CB84|NDUS7_PONPY RecName: Full=NADH dehydrogenase [ubiquinone] iron-sulfur protein
           7, mitochondrial; AltName: Full=Complex I-20kD;
           Short=CI-20kD; AltName: Full=NADH-ubiquinone
           oxidoreductase 20 kDa subunit; Flags: Precursor
 gi|111661828|gb|ABH12164.1| mitochondrial complex I subunit NDUFS7 [Gorilla gorilla]
 gi|111661830|gb|ABH12165.1| mitochondrial complex I subunit NDUFS7 [Pongo pygmaeus]
          Length = 213

 Score =  250 bits (640), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 117/179 (65%), Positives = 138/179 (77%)

Query: 6   VNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACC 65
           V+Q + +   S +   +    +      +   ++V  +D LV WAR  SL  MTFGLACC
Sbjct: 30  VHQSVATDGPSSTQPALPKARAVAPKPSSRGEYVVAKLDDLVNWARRSSLWPMTFGLACC 89

Query: 66  AVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVIS 125
           AVEMM  + PRYD++RFG   RASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYV+S
Sbjct: 90  AVEMMHMAAPRYDMDRFGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVVS 149

Query: 126 MGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           MGSCANGGGYYHYSYSVVRGCDRIVPVDIY+PGCPPTAEAL+YGIL LQ+KI+R   ++
Sbjct: 150 MGSCANGGGYYHYSYSVVRGCDRIVPVDIYIPGCPPTAEALLYGILQLQRKIKRERRLQ 208


>gi|34189943|gb|AAH01715.2| NDUFS7 protein [Homo sapiens]
          Length = 208

 Score =  250 bits (640), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 117/179 (65%), Positives = 138/179 (77%)

Query: 6   VNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACC 65
           V+Q + +   S +   +    +      +   ++V  +D LV WAR  SL  MTFGLACC
Sbjct: 25  VHQSVATDGPSSTQPALPKARAVAPKPSSRGEYVVAKLDDLVNWARRSSLWPMTFGLACC 84

Query: 66  AVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVIS 125
           AVEMM  + PRYD++RFG   RASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYV+S
Sbjct: 85  AVEMMHMAAPRYDMDRFGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVVS 144

Query: 126 MGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           MGSCANGGGYYHYSYSVVRGCDRIVPVDIY+PGCPPTAEAL+YGIL LQ+KI+R   ++
Sbjct: 145 MGSCANGGGYYHYSYSVVRGCDRIVPVDIYIPGCPPTAEALLYGILQLQRKIKRERRLQ 203


>gi|84516742|ref|ZP_01004100.1| NADH dehydrogenase beta subunit [Loktanella vestfoldensis SKA53]
 gi|84509210|gb|EAQ05669.1| NADH dehydrogenase beta subunit [Loktanella vestfoldensis SKA53]
          Length = 173

 Score =  250 bits (640), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 129/155 (83%), Positives = 141/155 (90%)

Query: 29  ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88
           +++E+  KGFLVTS   ++ WARTGSL WMTFGLACCAVEMM  SMPRYDLERFG APRA
Sbjct: 17  LNAELQDKGFLVTSTADVINWARTGSLHWMTFGLACCAVEMMHTSMPRYDLERFGTAPRA 76

Query: 89  SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 148
           SPRQSD+MIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR
Sbjct: 77  SPRQSDLMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 136

Query: 149 IVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           IVPVDIYVPGCPPTAEAL+YGIL LQ+K+RR G +
Sbjct: 137 IVPVDIYVPGCPPTAEALLYGILQLQRKMRRTGTI 171


>gi|319408580|emb|CBI82235.1| NADH dehydrogenase I, B subunit [Bartonella schoenbuchensis R1]
          Length = 176

 Score =  250 bits (640), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 137/162 (84%), Positives = 150/162 (92%)

Query: 23  DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82
           D  F  I++E++ KGFLVTS D L+TWARTGSLMWM+FGLACCAVEMMQ SMP YD ERF
Sbjct: 14  DKFFHDINAELSDKGFLVTSADALITWARTGSLMWMSFGLACCAVEMMQCSMPHYDNERF 73

Query: 83  GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142
           G+APRASPRQSDVM+VAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSV
Sbjct: 74  GYAPRASPRQSDVMVVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSV 133

Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           VRGCDRIVPVDIYVPGCPPTAEAL+YGILLLQKKIRR G+++
Sbjct: 134 VRGCDRIVPVDIYVPGCPPTAEALLYGILLLQKKIRRTGSIE 175


>gi|15604224|ref|NP_220740.1| NADH dehydrogenase subunit B [Rickettsia prowazekii str. Madrid E]
 gi|6647678|sp|Q9ZDH2|NUOB_RICPR RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|3860916|emb|CAA14816.1| NADH DEHYDROGENASE I CHAIN B (nuoB) [Rickettsia prowazekii]
 gi|292571965|gb|ADE29880.1| NADH dehydrogenase I chain B [Rickettsia prowazekii Rp22]
          Length = 174

 Score =  250 bits (640), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 113/158 (71%), Positives = 137/158 (86%)

Query: 27  SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP 86
             ++S +T++GFL++ VD++++WAR  SL  MTFGLACCAVEMMQA+  RYD++RFG   
Sbjct: 10  ELLNSGLTNRGFLLSKVDEVISWARANSLWPMTFGLACCAVEMMQAAASRYDMDRFGMLF 69

Query: 87  RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGC 146
           R SPRQSD+MIVAGTLTNKMA ALR+VYDQM EP++V+SMGSCANGGGYYH+SYSVVRGC
Sbjct: 70  RPSPRQSDLMIVAGTLTNKMAPALRKVYDQMTEPKWVLSMGSCANGGGYYHFSYSVVRGC 129

Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           DRIVPVD+YVPGCPPTAEALIYG++ LQKKI+R    K
Sbjct: 130 DRIVPVDVYVPGCPPTAEALIYGLMQLQKKIKRTTGFK 167


>gi|187281616|ref|NP_077718.3| NADH dehydrogenase [ubiquinone] iron-sulfur protein 7,
           mitochondrial precursor [Homo sapiens]
 gi|90110040|sp|O75251|NDUS7_HUMAN RecName: Full=NADH dehydrogenase [ubiquinone] iron-sulfur protein
           7, mitochondrial; AltName: Full=Complex I-20kD;
           Short=CI-20kD; AltName: Full=NADH-ubiquinone
           oxidoreductase 20 kDa subunit; AltName: Full=PSST
           subunit; Flags: Precursor
 gi|33150724|gb|AAP97240.1|AF115969_1 NADH:ubiquinone oxidoreductase PSST subunit [Homo sapiens]
 gi|62897035|dbj|BAD96458.1| NADH-ubiquinone oxidoreductase Fe-S protein 7 variant [Homo
           sapiens]
          Length = 213

 Score =  250 bits (640), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 117/179 (65%), Positives = 138/179 (77%)

Query: 6   VNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACC 65
           V+Q + +   S +   +    +      +   ++V  +D LV WAR  SL  MTFGLACC
Sbjct: 30  VHQSVATDGPSSTQPALPKARAVAPKPSSRGEYVVAKLDDLVNWARRSSLWPMTFGLACC 89

Query: 66  AVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVIS 125
           AVEMM  + PRYD++RFG   RASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYV+S
Sbjct: 90  AVEMMHMAAPRYDMDRFGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVVS 149

Query: 126 MGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           MGSCANGGGYYHYSYSVVRGCDRIVPVDIY+PGCPPTAEAL+YGIL LQ+KI+R   ++
Sbjct: 150 MGSCANGGGYYHYSYSVVRGCDRIVPVDIYIPGCPPTAEALLYGILQLQRKIKRERRLQ 208


>gi|84686428|ref|ZP_01014322.1| NADH dehydrogenase beta subunit [Maritimibacter alkaliphilus
           HTCC2654]
 gi|84665611|gb|EAQ12087.1| NADH dehydrogenase beta subunit [Rhodobacterales bacterium
           HTCC2654]
          Length = 174

 Score =  250 bits (640), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 127/156 (81%), Positives = 144/156 (92%)

Query: 28  RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
           ++S E+  KGFL+T+ D ++ WARTGSL WMTFGLACCAVEMMQ+SMPRYDLER+G APR
Sbjct: 17  QLSDELQDKGFLLTTTDDIINWARTGSLHWMTFGLACCAVEMMQSSMPRYDLERYGTAPR 76

Query: 88  ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCD 147
           ASPRQSD+MIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCD
Sbjct: 77  ASPRQSDLMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCD 136

Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           R+VPVD+YVPGCPP+AEAL+YGIL LQ+KIRR G +
Sbjct: 137 RVVPVDVYVPGCPPSAEALVYGILQLQRKIRRTGTI 172


>gi|84502605|ref|ZP_01000724.1| NADH dehydrogenase beta subunit [Oceanicola batsensis HTCC2597]
 gi|84389000|gb|EAQ01798.1| NADH dehydrogenase beta subunit [Oceanicola batsensis HTCC2597]
          Length = 207

 Score =  250 bits (639), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 127/158 (80%), Positives = 139/158 (87%)

Query: 26  FSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA 85
              ++ E+  KGFL+TS + L+ WARTGSL WMTFGLACCAVEMM  SMPRYD ERFG A
Sbjct: 48  TQALNKELQDKGFLLTSTEDLINWARTGSLHWMTFGLACCAVEMMHTSMPRYDAERFGIA 107

Query: 86  PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRG 145
           PRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYV+SMGSCANGGGYYHYSYSVVRG
Sbjct: 108 PRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGYYHYSYSVVRG 167

Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           CDRIVPVDIYVPGCPPTAEAL+YGI+ L +KIRR G +
Sbjct: 168 CDRIVPVDIYVPGCPPTAEALLYGIMQLARKIRRTGTI 205


>gi|110225660|ref|YP_665666.1| NADH dehydrogenase subunit 10 [Nephroselmis olivacea]
 gi|6066175|gb|AAF03193.1|AF110138_25 NADH dehydrogenase subunit 10 [Nephroselmis olivacea]
          Length = 158

 Score =  250 bits (639), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 115/149 (77%), Positives = 127/149 (85%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
            +  FL+T +D L+ WAR GS+  MTFGLACCAVEMM     RYDL+RFG   R SPRQS
Sbjct: 3   NNAEFLLTGIDSLLNWARKGSMWPMTFGLACCAVEMMHCGASRYDLDRFGIIFRPSPRQS 62

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD 153
           DVMIVAGTLTNKMA ALR+VYDQMPEPR+V+SMGSCANGGGYYHYSYSVVRGCDRIVPVD
Sbjct: 63  DVMIVAGTLTNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIVPVD 122

Query: 154 IYVPGCPPTAEALIYGILLLQKKIRRVGN 182
           IYVPGCPPTAEAL+YG+L LQKKI+R  N
Sbjct: 123 IYVPGCPPTAEALLYGLLQLQKKIQRTNN 151


>gi|209730616|gb|ACI66177.1| NADH dehydrogenase iron-sulfur protein 7, mitochondrial precursor
           [Salmo salar]
 gi|209731354|gb|ACI66546.1| NADH dehydrogenase iron-sulfur protein 7, mitochondrial precursor
           [Salmo salar]
 gi|223646164|gb|ACN09840.1| NADH dehydrogenase iron-sulfur protein 7, mitochondrial precursor
           [Salmo salar]
 gi|223672011|gb|ACN12187.1| NADH dehydrogenase iron-sulfur protein 7, mitochondrial precursor
           [Salmo salar]
 gi|303660793|gb|ADM16006.1| NADH dehydrogenase iron-sulfur protein 7, mitochondrial precursor
           [Salmo salar]
          Length = 220

 Score =  250 bits (639), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 114/151 (75%), Positives = 129/151 (85%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
           +   +++T +D LV WAR  SL  MTFGLACCAVEMM  + PRYD++RFG   RASPRQ+
Sbjct: 65  SKGEYVITKLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQA 124

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD 153
           DVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSY+VVRGCDRIVPVD
Sbjct: 125 DVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYAVVRGCDRIVPVD 184

Query: 154 IYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           IYVPGCPPTAEAL+YG L LQKKI+R   ++
Sbjct: 185 IYVPGCPPTAEALLYGTLQLQKKIKREKKMR 215


>gi|119589913|gb|EAW69507.1| NADH dehydrogenase (ubiquinone) Fe-S protein 7, 20kDa
           (NADH-coenzyme Q reductase), isoform CRA_a [Homo
           sapiens]
          Length = 298

 Score =  250 bits (639), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 117/179 (65%), Positives = 138/179 (77%)

Query: 6   VNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACC 65
           V+Q + +   S +   +    +      +   ++V  +D LV WAR  SL  MTFGLACC
Sbjct: 115 VHQSVATDGPSSTQPALPKARAVAPKPSSRGEYVVAKLDDLVNWARRSSLWPMTFGLACC 174

Query: 66  AVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVIS 125
           AVEMM  + PRYD++RFG   RASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYV+S
Sbjct: 175 AVEMMHMAAPRYDMDRFGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVVS 234

Query: 126 MGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           MGSCANGGGYYHYSYSVVRGCDRIVPVDIY+PGCPPTAEAL+YGIL LQ+KI+R   ++
Sbjct: 235 MGSCANGGGYYHYSYSVVRGCDRIVPVDIYIPGCPPTAEALLYGILQLQRKIKRERRLQ 293


>gi|225707068|gb|ACO09380.1| NADH dehydrogenase iron-sulfur protein 7, mitochondrial precursor
           [Osmerus mordax]
          Length = 220

 Score =  250 bits (638), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 115/152 (75%), Positives = 129/152 (84%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
            +   +++T +D LV WAR  SL  MTFGLACCAVEMM  + PRYD++RFG   RASPRQ
Sbjct: 64  TSKGEYVITKLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQ 123

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           SDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSY+VVRGCDRIVPV
Sbjct: 124 SDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYAVVRGCDRIVPV 183

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           DIYVPGCPPTAEAL+YG L LQKKI+R   ++
Sbjct: 184 DIYVPGCPPTAEALLYGTLQLQKKIKREKKMR 215


>gi|114052144|ref|NP_001040456.1| NADH-ubiquinone oxidoreductase Fe-S protein 7 [Bombyx mori]
 gi|95102968|gb|ABF51425.1| NADH-ubiquinone oxidoreductase Fe-S protein 7 [Bombyx mori]
          Length = 210

 Score =  250 bits (638), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 116/182 (63%), Positives = 133/182 (73%)

Query: 3   LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62
            T V  +I               +S            V  +D L+ W R GSL  MTFGL
Sbjct: 24  FTPVVSQIRDTHLPAPNPTEKRPYSPFQDASNMAEMAVARLDDLLNWGRKGSLWPMTFGL 83

Query: 63  ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122
           ACCAVEMM  + PRYD++R+G   RASPRQSDVMIVAGTLTNKMA ALR+VYDQMP+PR+
Sbjct: 84  ACCAVEMMHIAAPRYDMDRYGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPDPRW 143

Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
           VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG+L LQKKI+R+  
Sbjct: 144 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGVLQLQKKIKRMKT 203

Query: 183 VK 184
           ++
Sbjct: 204 IQ 205


>gi|73987562|ref|XP_533960.2| PREDICTED: similar to NADH-ubiquinone oxidoreductase Fe-S protein 7
           [Canis familiaris]
          Length = 216

 Score =  250 bits (638), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 117/174 (67%), Positives = 138/174 (79%), Gaps = 1/174 (0%)

Query: 12  SGQSSCSLEKVDADFSRISSEITHKG-FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMM 70
              +  ++    A   + S+  + +G ++V  +D L+ WAR  SL  MTFGLACCAVEMM
Sbjct: 38  PSSTQPAVSSAGAVVPKSSALPSSRGEYVVAKLDDLINWARRSSLWPMTFGLACCAVEMM 97

Query: 71  QASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCA 130
             + PRYD++RFG   RASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYV+SMGSCA
Sbjct: 98  HMAAPRYDMDRFGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCA 157

Query: 131 NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQ+KI+R   ++
Sbjct: 158 NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQRKIKREKKLR 211


>gi|328705672|ref|XP_001949063.2| PREDICTED: probable NADH dehydrogenase [ubiquinone] iron-sulfur
           protein 7, mitochondrial-like isoform 1 [Acyrthosiphon
           pisum]
 gi|328705674|ref|XP_003242871.1| PREDICTED: probable NADH dehydrogenase [ubiquinone] iron-sulfur
           protein 7, mitochondrial-like isoform 2 [Acyrthosiphon
           pisum]
 gi|239788027|dbj|BAH70710.1| ACYPI008241 [Acyrthosiphon pisum]
          Length = 218

 Score =  250 bits (638), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 109/173 (63%), Positives = 133/173 (76%)

Query: 12  SGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQ 71
           + Q +   EK    +S          + V  +D ++ W R  SL  +TFGLACCAVEMM 
Sbjct: 41  ASQDTNIEEKPYRPYSPFQKTNNMAEYAVARLDDVLNWGRKHSLWPLTFGLACCAVEMMH 100

Query: 72  ASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCAN 131
            + PRYD++R+G   RASPRQ+D++IVAGTLTNKMA ALRRVYDQMP+P++VISMGSCAN
Sbjct: 101 IAAPRYDMDRYGVVFRASPRQADLIIVAGTLTNKMAPALRRVYDQMPDPKWVISMGSCAN 160

Query: 132 GGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           GGGYYHYSYSVVRGCDR++PVDIYVPGCPPTAEAL+YGIL LQKKI+R+   +
Sbjct: 161 GGGYYHYSYSVVRGCDRVIPVDIYVPGCPPTAEALMYGILQLQKKIKRMSLAQ 213


>gi|260574759|ref|ZP_05842762.1| NADH-quinone oxidoreductase, B subunit [Rhodobacter sp. SW2]
 gi|259023176|gb|EEW26469.1| NADH-quinone oxidoreductase, B subunit [Rhodobacter sp. SW2]
          Length = 177

 Score =  250 bits (638), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 127/169 (75%), Positives = 147/169 (86%)

Query: 15  SSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASM 74
           ++ +    +     ++ E++ KGFL+TS + ++ WARTGSL WMTFGLACCAVEM+Q SM
Sbjct: 7   ANTAGPDAEVATDALNRELSDKGFLLTSTEDIINWARTGSLHWMTFGLACCAVEMIQLSM 66

Query: 75  PRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGG 134
           PRYDLERFG APRASPRQSD+MIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGG
Sbjct: 67  PRYDLERFGTAPRASPRQSDLMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGG 126

Query: 135 YYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           YYHYSYSVVRGCDRIVPVD+YVPGCPPTAEAL+YGIL LQ+K+RR G +
Sbjct: 127 YYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALLYGILQLQRKMRRTGTI 175


>gi|225704208|gb|ACO07950.1| NADH dehydrogenase iron-sulfur protein 7, mitochondrial precursor
           [Oncorhynchus mykiss]
          Length = 218

 Score =  250 bits (638), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 113/151 (74%), Positives = 128/151 (84%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
           +   +++T +D LV WAR  SL  MTFGLACCAVEMM  + PRYD++RFG   RASP Q+
Sbjct: 63  SKGEYVITKLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPGQA 122

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD 153
           DVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSY+VVRGCDRIVPVD
Sbjct: 123 DVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYAVVRGCDRIVPVD 182

Query: 154 IYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           IYVPGCPPTAEAL+YG L LQKKI+R   ++
Sbjct: 183 IYVPGCPPTAEALLYGTLQLQKKIKREKKMR 213


>gi|289207894|ref|YP_003459960.1| NADH-quinone oxidoreductase subunit beta [Thioalkalivibrio sp.
           K90mix]
 gi|288943525|gb|ADC71224.1| NADH-quinone oxidoreductase, B subunit [Thioalkalivibrio sp.
           K90mix]
          Length = 158

 Score =  250 bits (638), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 117/151 (77%), Positives = 129/151 (85%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           +  KGF+ TS D+L+ WARTGSL  MTFGLACCAVEMM A   RYDL+RFG   R SPRQ
Sbjct: 6   VLEKGFVTTSADKLINWARTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGIIFRPSPRQ 65

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           SDVMIVAGTL NKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSY+VVRGCDRIVPV
Sbjct: 66  SDVMIVAGTLVNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYAVVRGCDRIVPV 125

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           D+YVPGCPPTAEAL+YGI+ LQ KIRR   +
Sbjct: 126 DVYVPGCPPTAEALLYGIIQLQNKIRRTNTI 156


>gi|260800203|ref|XP_002595024.1| hypothetical protein BRAFLDRAFT_99644 [Branchiostoma floridae]
 gi|229280264|gb|EEN51035.1| hypothetical protein BRAFLDRAFT_99644 [Branchiostoma floridae]
          Length = 194

 Score =  250 bits (638), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 117/165 (70%), Positives = 133/165 (80%)

Query: 19  LEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78
           +   D +    + + +   F+V  +D LV WAR  SL  MTFGLACCAVEMM  + PRYD
Sbjct: 24  VPAEDTNAVTPAPKPSDAEFVVARLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPRYD 83

Query: 79  LERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY 138
           ++RFG   RASPRQ+DVMIVAGTLTNKMA ALR+VYDQMPEPRYV+SMGSCANGGGYYHY
Sbjct: 84  MDRFGVVFRASPRQADVMIVAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGYYHY 143

Query: 139 SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           SYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQKKI+R   +
Sbjct: 144 SYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKIKRTKTL 188


>gi|194763060|ref|XP_001963652.1| GF19983 [Drosophila ananassae]
 gi|190629311|gb|EDV44728.1| GF19983 [Drosophila ananassae]
          Length = 217

 Score =  250 bits (638), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 111/178 (62%), Positives = 139/178 (78%), Gaps = 2/178 (1%)

Query: 7   NQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCA 66
           N   I+  S    +K  + F   + + +   + +  +D L+ W R GS+  +TFGLACCA
Sbjct: 37  NTLTIAKTSEEIPKKGYSPFG--NKQASAAEWSLARLDDLLNWGRKGSIWPLTFGLACCA 94

Query: 67  VEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISM 126
           VEMM  + PRYD++R+G   RASPRQ+DV+IVAGTLTNKMA ALR+VYDQMPEPR+VISM
Sbjct: 95  VEMMHIAAPRYDMDRYGVVFRASPRQADVIIVAGTLTNKMAPALRKVYDQMPEPRWVISM 154

Query: 127 GSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           GSCANGGGYYHYSYSVVRGCDRI+PVDIYVPGCPPTAEAL+YG+L LQKK++R+  ++
Sbjct: 155 GSCANGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALMYGVLQLQKKVKRMKTLQ 212


>gi|307206424|gb|EFN84462.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 7,
           mitochondrial [Harpegnathos saltator]
          Length = 224

 Score =  250 bits (638), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 114/180 (63%), Positives = 135/180 (75%)

Query: 5   TVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLAC 64
                +   +     +     +S   +      + +  VD L+ W R GSL  MTFGLAC
Sbjct: 40  ATESSVQETKFPLPEKPKVEPYSPFQNTNNMAEYALARVDDLLNWGRKGSLWPMTFGLAC 99

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           CAVEMM  + PRYD++RFG   RASPRQSD +IVAGTLTNKMASALR++YDQMPEPR+VI
Sbjct: 100 CAVEMMHIAAPRYDMDRFGVVFRASPRQSDCIIVAGTLTNKMASALRKIYDQMPEPRWVI 159

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           SMGSCANGGGYYHYSYSVVRGCDRI+PVDIYVPGCPPTAEAL+YG+L LQKKI+R+ NV+
Sbjct: 160 SMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALLYGVLQLQKKIKRMQNVQ 219


>gi|195024283|ref|XP_001985843.1| GH21035 [Drosophila grimshawi]
 gi|193901843|gb|EDW00710.1| GH21035 [Drosophila grimshawi]
          Length = 226

 Score =  250 bits (638), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 109/176 (61%), Positives = 135/176 (76%), Gaps = 2/176 (1%)

Query: 9   KIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVE 68
            ++        +K  + F    S +      +  +D L+ W R GS+  +TFGLACCAVE
Sbjct: 48  PVVESSKDALPKKGYSPFGTKQSSMAEWS--LARLDDLLNWGRKGSIWPLTFGLACCAVE 105

Query: 69  MMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGS 128
           MM  + PRYD++R+G   RASPRQ+DV+IVAGTLTNKMA ALR+VYDQMPEPR+VISMGS
Sbjct: 106 MMHIAAPRYDMDRYGVVFRASPRQADVIIVAGTLTNKMAPALRKVYDQMPEPRWVISMGS 165

Query: 129 CANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           CANGGGYYHYSYSVVRGCDRI+PVDIYVPGCPPTAEAL+YG+L LQKK++R+  ++
Sbjct: 166 CANGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALLYGVLQLQKKVKRMKTLQ 221


>gi|229366862|gb|ACQ58411.1| NADH dehydrogenase iron-sulfur protein 7, mitochondrial precursor
           [Anoplopoma fimbria]
          Length = 219

 Score =  249 bits (637), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 114/151 (75%), Positives = 128/151 (84%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
           +   + +T +D L+ WAR  SL  MTFGLACCAVEMM  + PRYD++RFG   RASPRQ+
Sbjct: 64  SKGEYAITKLDDLINWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQA 123

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD 153
           DVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD
Sbjct: 124 DVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD 183

Query: 154 IYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           IYVPGCPPTAEAL+YG L LQKKI+R   ++
Sbjct: 184 IYVPGCPPTAEALLYGTLQLQKKIKREKKLR 214


>gi|18859983|ref|NP_573097.1| CG9172, isoform A [Drosophila melanogaster]
 gi|24642371|ref|NP_727921.1| CG9172, isoform B [Drosophila melanogaster]
 gi|7293168|gb|AAF48552.1| CG9172, isoform A [Drosophila melanogaster]
 gi|16769444|gb|AAL28941.1| LD31474p [Drosophila melanogaster]
 gi|22832322|gb|AAN09378.1| CG9172, isoform B [Drosophila melanogaster]
 gi|220944268|gb|ACL84677.1| CG9172-PA [synthetic construct]
 gi|220954204|gb|ACL89645.1| CG9172-PA [synthetic construct]
          Length = 221

 Score =  249 bits (637), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 110/189 (58%), Positives = 143/189 (75%), Gaps = 6/189 (3%)

Query: 2   GLTTVNQKIISGQSSCSLEKVDADFSRI------SSEITHKGFLVTSVDQLVTWARTGSL 55
            L  +N  ++  Q +  + +V  +  +       + + +   + +  +D L+ W R GS+
Sbjct: 28  ALPALNLALVRQQQTLPVAEVAQNLPKKGYSPFGTKQSSVAEWSLARLDDLLNWGRKGSI 87

Query: 56  MWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYD 115
             +TFGLACCAVEMM  + PRYD++R+G   RASPRQ+DV+IVAGTLTNKMA ALR+VYD
Sbjct: 88  WPLTFGLACCAVEMMHIAAPRYDMDRYGVVFRASPRQADVIIVAGTLTNKMAPALRKVYD 147

Query: 116 QMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175
           QMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRI+PVDIYVPGCPPTAEAL+YG+L LQK
Sbjct: 148 QMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALMYGVLQLQK 207

Query: 176 KIRRVGNVK 184
           K++R+  ++
Sbjct: 208 KVKRMKTLQ 216


>gi|307293269|ref|ZP_07573115.1| NADH-quinone oxidoreductase, B subunit [Sphingobium
           chlorophenolicum L-1]
 gi|306881335|gb|EFN12551.1| NADH-quinone oxidoreductase, B subunit [Sphingobium
           chlorophenolicum L-1]
          Length = 184

 Score =  249 bits (636), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 128/184 (69%), Positives = 150/184 (81%), Gaps = 1/184 (0%)

Query: 1   MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTF 60
           MG+  + +           +     F+ ++SE++ KGFLVTS ++L  WARTGSL WMTF
Sbjct: 1   MGV-ELERPAPGTLLPAGTQPDQDFFNALNSEVSDKGFLVTSTEELFQWARTGSLWWMTF 59

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           GLACCAVEM+  +MPRYD+ERFG APRASPRQSDVMIVAGTL NKMA ALR+VYDQM  P
Sbjct: 60  GLACCAVEMIHVNMPRYDMERFGAAPRASPRQSDVMIVAGTLCNKMAPALRKVYDQMSNP 119

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           +YVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG++ LQ+KIRR+
Sbjct: 120 KYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGVMQLQRKIRRI 179

Query: 181 GNVK 184
           G V+
Sbjct: 180 GTVE 183


>gi|288942133|ref|YP_003444373.1| NADH-quinone oxidoreductase subunit B [Allochromatium vinosum DSM
           180]
 gi|288897505|gb|ADC63341.1| NADH-quinone oxidoreductase, B subunit [Allochromatium vinosum DSM
           180]
          Length = 158

 Score =  249 bits (636), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 114/151 (75%), Positives = 128/151 (84%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           +  +G + T+ D+L+ WARTGSL  MTFGLACCA+EMM A   RYDL+RFG   R SPRQ
Sbjct: 6   LLEEGVVTTTADKLINWARTGSLWPMTFGLACCAIEMMHAGAARYDLDRFGIIFRPSPRQ 65

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           SDVMIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPV
Sbjct: 66  SDVMIVAGTLVNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPV 125

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           D+YVPGCPPTAEAL+YGIL LQ+KIRR   +
Sbjct: 126 DVYVPGCPPTAEALLYGILQLQEKIRRTNTI 156


>gi|307168025|gb|EFN61349.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 7,
           mitochondrial [Camponotus floridanus]
          Length = 222

 Score =  249 bits (636), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 116/189 (61%), Positives = 140/189 (74%), Gaps = 6/189 (3%)

Query: 2   GLTTVNQKIISGQSSCSLEKVDADFSRISSEITH------KGFLVTSVDQLVTWARTGSL 55
            +T +  K ++ +SS    K            +         + +  VD L+ W R GS+
Sbjct: 29  AITKIQSKDMATESSVQKAKPPLPEKAKVEPYSPFRPNNMAEYALARVDDLLNWGRKGSI 88

Query: 56  MWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYD 115
             MTFGLACCAVEMM  + PRYD++RFG   RASPRQSDV+IVAGTLTNKMA ALR++YD
Sbjct: 89  WPMTFGLACCAVEMMHIAAPRYDMDRFGVVFRASPRQSDVIIVAGTLTNKMAPALRKIYD 148

Query: 116 QMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175
           QMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRI+PVDIYVPGCPPTAEAL+YGIL LQK
Sbjct: 149 QMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALLYGILQLQK 208

Query: 176 KIRRVGNVK 184
           KI+R+ +++
Sbjct: 209 KIKRMQSIQ 217


>gi|332375552|gb|AEE62917.1| unknown [Dendroctonus ponderosae]
          Length = 227

 Score =  249 bits (636), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 112/184 (60%), Positives = 137/184 (74%), Gaps = 3/184 (1%)

Query: 4   TTVNQKIISGQSSCSLE---KVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTF 60
           T V  +     ++ S E   +    +S   +      + +  +D L+ W R GS+  +TF
Sbjct: 39  TQVRDQSTQPATASSTEVAAQKRKPYSPFQNTNNVAEYALARLDDLLNWGRKGSVWPLTF 98

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           GLACCAVEMM  + PRYD++R+G   RASPRQ+D +IVAGTLTNKMA ALR+VYDQMPEP
Sbjct: 99  GLACCAVEMMHIAAPRYDMDRYGVVFRASPRQADCIIVAGTLTNKMAPALRKVYDQMPEP 158

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           R+VISMGSCANGGGYYHYSYSVVRGCDRI+PVDIYVPGCPPTAEAL+YG+L LQKKI+R 
Sbjct: 159 RWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALMYGVLQLQKKIKRY 218

Query: 181 GNVK 184
             V+
Sbjct: 219 NTVQ 222


>gi|256821516|ref|YP_003145479.1| NADH-quinone oxidoreductase subunit B [Kangiella koreensis DSM
           16069]
 gi|256795055|gb|ACV25711.1| NADH-quinone oxidoreductase, B subunit [Kangiella koreensis DSM
           16069]
          Length = 186

 Score =  249 bits (635), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 114/155 (73%), Positives = 129/155 (83%)

Query: 29  ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88
           +  ++   GF+ TS+  L  WARTGS+  +TFGLACCA+EMM A   RYD++RFG   R 
Sbjct: 3   LEQQLQGDGFVTTSIKDLFDWARTGSMWPVTFGLACCAIEMMHAGAARYDMDRFGVIFRP 62

Query: 89  SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 148
           SPRQSDVMIVAGTLTNKMA ALRRVYDQMPEP++VISMGSCANGGGYYHYSYSVVRGCDR
Sbjct: 63  SPRQSDVMIVAGTLTNKMAPALRRVYDQMPEPKWVISMGSCANGGGYYHYSYSVVRGCDR 122

Query: 149 IVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           IVPVDIYVPGCPPTAEAL+YGI+ LQ KIRR   +
Sbjct: 123 IVPVDIYVPGCPPTAEALLYGIIQLQNKIRRQKVI 157


>gi|195385751|ref|XP_002051568.1| GJ16291 [Drosophila virilis]
 gi|194148025|gb|EDW63723.1| GJ16291 [Drosophila virilis]
          Length = 209

 Score =  249 bits (635), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 115/172 (66%), Positives = 136/172 (79%), Gaps = 2/172 (1%)

Query: 13  GQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQA 72
            +     +K  + F R   ++    + VT +D L+ W R GSL  MTFGLACCAVEMM  
Sbjct: 35  DKHGMPPKKGYSPFGR--QQVGWAEWSVTRLDDLLNWGRKGSLWPMTFGLACCAVEMMHI 92

Query: 73  SMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANG 132
           + PRYD++RFG   RASPRQ+DV+IVAGTLTNKMA ALR++YDQMPEPR+VISMGSCANG
Sbjct: 93  AAPRYDMDRFGVVFRASPRQTDVIIVAGTLTNKMAPALRKIYDQMPEPRWVISMGSCANG 152

Query: 133 GGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           GGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+Y IL LQKKI+R+  ++
Sbjct: 153 GGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYAILQLQKKIKRMRTLQ 204


>gi|224007275|ref|XP_002292597.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220971459|gb|EED89793.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 216

 Score =  249 bits (635), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 119/177 (67%), Positives = 138/177 (77%), Gaps = 5/177 (2%)

Query: 12  SGQSSCSLEKVDADFSRISSE-----ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCA 66
           +  ++ SL ++D     ++            + V+ VD LV WAR GSL  MTFGLACCA
Sbjct: 34  ASSTTSSLTRLDGVDELLTGTGGVPTSNKVEYAVSRVDDLVNWARKGSLWPMTFGLACCA 93

Query: 67  VEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISM 126
           VEMM A+  RYD+ERFG   RASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPR+V+SM
Sbjct: 94  VEMMHAAASRYDMERFGMVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRWVVSM 153

Query: 127 GSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           GSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG+L LQKKI+   ++
Sbjct: 154 GSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGLLQLQKKIKGNKSL 210


>gi|195357046|ref|XP_002044925.1| GM11675 [Drosophila sechellia]
 gi|194124267|gb|EDW46310.1| GM11675 [Drosophila sechellia]
          Length = 221

 Score =  249 bits (635), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 110/189 (58%), Positives = 143/189 (75%), Gaps = 6/189 (3%)

Query: 2   GLTTVNQKIISGQSSCSLEKVDADFSRI------SSEITHKGFLVTSVDQLVTWARTGSL 55
            L  +N  ++  Q +  + +V  +  +       + + +   + +  +D L+ W R GS+
Sbjct: 28  ALPALNMVLVRQQQTLPVAEVAQNLPKKGYSPFGTKQSSVAEWSLARLDDLLNWGRKGSI 87

Query: 56  MWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYD 115
             +TFGLACCAVEMM  + PRYD++R+G   RASPRQ+DV+IVAGTLTNKMA ALR+VYD
Sbjct: 88  WPLTFGLACCAVEMMHIAAPRYDMDRYGVVFRASPRQADVIIVAGTLTNKMAPALRKVYD 147

Query: 116 QMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175
           QMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRI+PVDIYVPGCPPTAEAL+YG+L LQK
Sbjct: 148 QMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALMYGVLQLQK 207

Query: 176 KIRRVGNVK 184
           K++R+  ++
Sbjct: 208 KVKRMKTLQ 216


>gi|294011308|ref|YP_003544768.1| NADH dehydrogenase I chain B [Sphingobium japonicum UT26S]
 gi|292674638|dbj|BAI96156.1| NADH dehydrogenase I chain B [Sphingobium japonicum UT26S]
          Length = 184

 Score =  249 bits (635), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 128/184 (69%), Positives = 149/184 (80%), Gaps = 1/184 (0%)

Query: 1   MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTF 60
           MG+  + +           +     F  ++SE++ KGFLVTS ++L  WARTGSL WMTF
Sbjct: 1   MGV-ELERPAPGTLLPAGTQPDQHFFDALNSEVSDKGFLVTSTEELFQWARTGSLWWMTF 59

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           GLACCAVEM+  +MPRYD+ERFG APRASPRQSDVMIVAGTL NKMA ALR+VYDQM  P
Sbjct: 60  GLACCAVEMIHVNMPRYDMERFGAAPRASPRQSDVMIVAGTLCNKMAPALRKVYDQMSNP 119

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           +YVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG++ LQ+KIRR+
Sbjct: 120 KYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGVMQLQRKIRRI 179

Query: 181 GNVK 184
           G V+
Sbjct: 180 GTVE 183


>gi|114707368|ref|ZP_01440265.1| NADH-ubiquinone oxidoreductase chain B protein [Fulvimarina pelagi
           HTCC2506]
 gi|114537249|gb|EAU40376.1| NADH-ubiquinone oxidoreductase chain B protein [Fulvimarina pelagi
           HTCC2506]
          Length = 194

 Score =  248 bits (634), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 137/193 (70%), Positives = 155/193 (80%), Gaps = 9/193 (4%)

Query: 1   MGLTT-VNQKIISGQ--------SSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWAR 51
           MG+    N+ +++ Q                D   + I+ E+  KGFLVTS D L+ WAR
Sbjct: 1   MGVIHGTNKPLLAPQTDVASVGAPGSVTAAPDPFVTAINDELADKGFLVTSTDDLIQWAR 60

Query: 52  TGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALR 111
            GSLMWMTFGLACCAVEMMQ SMPRYD ERFGFAPRASPRQSDVMIVAGTLTNKMA ALR
Sbjct: 61  NGSLMWMTFGLACCAVEMMQMSMPRYDAERFGFAPRASPRQSDVMIVAGTLTNKMAPALR 120

Query: 112 RVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171
           +VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR++PVDIYVPGCPP+AEAL+YG++
Sbjct: 121 KVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRVIPVDIYVPGCPPSAEALLYGVM 180

Query: 172 LLQKKIRRVGNVK 184
           LLQKKIRR G ++
Sbjct: 181 LLQKKIRRTGTIE 193


>gi|51473550|ref|YP_067307.1| NADH dehydrogenase subunit B [Rickettsia typhi str. Wilmington]
 gi|81390150|sp|Q68X17|NUOB_RICTY RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|51459862|gb|AAU03825.1| NADH dehydrogenase (ubiquinone) subunit B [Rickettsia typhi str.
           Wilmington]
          Length = 171

 Score =  248 bits (634), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 112/158 (70%), Positives = 137/158 (86%)

Query: 27  SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP 86
             ++S +T++GFL++ +D++++WAR  SL  MTFGLACCAVEMMQA+  RYD++RFG   
Sbjct: 10  ELLNSCLTNRGFLLSKIDEVISWARANSLWPMTFGLACCAVEMMQAAASRYDMDRFGMLF 69

Query: 87  RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGC 146
           R SPRQSD+MIVAGTLTNKMA ALR+VYDQM EP++V+SMGSCANGGGYYH+SYSVVRGC
Sbjct: 70  RPSPRQSDLMIVAGTLTNKMAPALRKVYDQMTEPKWVLSMGSCANGGGYYHFSYSVVRGC 129

Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           DRIVPVD+YVPGCPPTAEALIYG++ LQKKI+R    K
Sbjct: 130 DRIVPVDVYVPGCPPTAEALIYGLMQLQKKIKRTTGFK 167


>gi|86358166|ref|YP_470058.1| NADH dehydrogenase subunit B [Rhizobium etli CFN 42]
 gi|123511609|sp|Q2K755|NUOB2_RHIEC RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName:
           Full=NADH dehydrogenase I subunit B 2; AltName:
           Full=NDH-1 subunit B 2
 gi|86282268|gb|ABC91331.1| NADH-ubiquinone oxidoreductase chain B protein [Rhizobium etli CFN
           42]
          Length = 186

 Score =  248 bits (634), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 136/183 (74%), Positives = 154/183 (84%)

Query: 2   GLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFG 61
             T  +    + Q      + D     I++E+  KGFLVTS D+L+TWARTGSLMWMTFG
Sbjct: 3   SFTQPHSAPRNFQFPGQQRQGDPTMGTINAELADKGFLVTSTDELITWARTGSLMWMTFG 62

Query: 62  LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPR 121
           LACCA+EMMQ SMPRYD+ERFG APRASPRQSD+MIVAGTL NKMA ALR+VYDQMPEPR
Sbjct: 63  LACCAIEMMQMSMPRYDIERFGVAPRASPRQSDLMIVAGTLCNKMAPALRKVYDQMPEPR 122

Query: 122 YVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
           YVISMGSCANGGGYYHYSYSVVRGCDR+VPVDIYVPGCPPTAEAL+YGILLLQ+KIRR G
Sbjct: 123 YVISMGSCANGGGYYHYSYSVVRGCDRVVPVDIYVPGCPPTAEALLYGILLLQRKIRRNG 182

Query: 182 NVK 184
           +++
Sbjct: 183 SIE 185


>gi|153875120|ref|ZP_02003055.1| NADH-quinone oxidoreductase, B subunit [Beggiatoa sp. PS]
 gi|152068417|gb|EDN66946.1| NADH-quinone oxidoreductase, B subunit [Beggiatoa sp. PS]
          Length = 160

 Score =  248 bits (634), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 117/151 (77%), Positives = 130/151 (86%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           I  +GF+ T+ D+L+ WARTGS+  MTFGLACCAVEMMQA   RYDL+RFG   R SPRQ
Sbjct: 6   ILQEGFVTTTADRLINWARTGSMWPMTFGLACCAVEMMQAGASRYDLDRFGIVFRPSPRQ 65

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           SDVMIVAGTLTNKMA ALR+VYDQMP PR+VISMGSCANGGGYYHYSYSVVRGCDRIVPV
Sbjct: 66  SDVMIVAGTLTNKMAPALRKVYDQMPNPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPV 125

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           DIY+PGCPPTAEAL+YGIL LQ KI+R   +
Sbjct: 126 DIYIPGCPPTAEALLYGILQLQNKIKRTNTI 156


>gi|195567032|ref|XP_002107079.1| GD15767 [Drosophila simulans]
 gi|194204476|gb|EDX18052.1| GD15767 [Drosophila simulans]
          Length = 221

 Score =  248 bits (634), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 110/189 (58%), Positives = 143/189 (75%), Gaps = 6/189 (3%)

Query: 2   GLTTVNQKIISGQSSCSLEKVDADFSRI------SSEITHKGFLVTSVDQLVTWARTGSL 55
            L  +N  ++  Q +  + +V  +  +       + + +   + +  +D L+ W R GS+
Sbjct: 28  ALPALNMVLVRQQQTLPVAEVAQNLPKKGYSPFGTKQSSVAEWSLARLDDLLNWGRKGSI 87

Query: 56  MWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYD 115
             +TFGLACCAVEMM  + PRYD++R+G   RASPRQ+DV+IVAGTLTNKMA ALR+VYD
Sbjct: 88  WPLTFGLACCAVEMMHIAAPRYDMDRYGVVFRASPRQADVIIVAGTLTNKMAPALRKVYD 147

Query: 116 QMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175
           QMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRI+PVDIYVPGCPPTAEAL+YG+L LQK
Sbjct: 148 QMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALMYGVLQLQK 207

Query: 176 KIRRVGNVK 184
           K++R+  ++
Sbjct: 208 KVKRMKTLQ 216


>gi|167536644|ref|XP_001749993.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163771503|gb|EDQ85168.1| predicted protein [Monosiga brevicollis MX1]
          Length = 218

 Score =  248 bits (634), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 120/186 (64%), Positives = 145/186 (77%), Gaps = 4/186 (2%)

Query: 3   LTTVNQKIISGQSSCSLEKVDADF---SRISSEITHKG-FLVTSVDQLVTWARTGSLMWM 58
           L  + Q     Q++ S   V A     S+I + I ++  + +  +D LV WAR GS+  M
Sbjct: 28  LPALAQLRSVAQTTPSSAAVPAPVFGKSKIPANIDNRADYALAKLDDLVNWARKGSMWPM 87

Query: 59  TFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMP 118
           TFGLACCAVEMM  + PRYD++RFG   RASPRQSDVMIVAGTLTNKMA ALR+VYDQMP
Sbjct: 88  TFGLACCAVEMMHVAAPRYDMDRFGIVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMP 147

Query: 119 EPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           EPR+V+SMGSCANGGGYYHYSY+VVRGCDRIVPVDIYVPGCPPT+EAL+YG+L LQKKI+
Sbjct: 148 EPRWVVSMGSCANGGGYYHYSYAVVRGCDRIVPVDIYVPGCPPTSEALLYGLLQLQKKIK 207

Query: 179 RVGNVK 184
           R  +++
Sbjct: 208 RDRSLQ 213


>gi|115400845|ref|XP_001216011.1| NADH-ubiquinone oxidoreductase 19.3 kDa subunit, mitochondrial
           precursor [Aspergillus terreus NIH2624]
 gi|114191677|gb|EAU33377.1| NADH-ubiquinone oxidoreductase 19.3 kDa subunit, mitochondrial
           precursor [Aspergillus terreus NIH2624]
          Length = 307

 Score =  248 bits (634), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 117/183 (63%), Positives = 139/183 (75%), Gaps = 2/183 (1%)

Query: 4   TTVNQKIISGQSSCSLEKVDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFG 61
           T + ++  +GQS  +  KV  +    S E       +++T++DQ+  WAR  SL  MTFG
Sbjct: 120 TALERQGQTGQSLTASGKVRKEVPLASQEKKEGAMQYVLTTLDQVANWARQSSLWPMTFG 179

Query: 62  LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPR 121
           LACCAVEMM  S PRYD +R G   RASPRQSDVMIVAGTLTNKMA ALR+VYDQMP+PR
Sbjct: 180 LACCAVEMMHLSTPRYDQDRLGIIFRASPRQSDVMIVAGTLTNKMAPALRQVYDQMPDPR 239

Query: 122 YVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
           +V+SMGSCANGGGYYHYSYSVVRGCDRIVPVD+YVPGCPPT+EAL+YGI  LQKK+R   
Sbjct: 240 WVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTSEALMYGIFQLQKKMRHTR 299

Query: 182 NVK 184
             +
Sbjct: 300 ITR 302


>gi|269469169|gb|EEZ80711.1| NADH dehydrogenase I chain B [uncultured SUP05 cluster bacterium]
          Length = 159

 Score =  248 bits (634), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 114/151 (75%), Positives = 131/151 (86%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           +  + F+ TS+D+++ WARTGSL  MTFGLACCAVEMM+A   RYDL+RFG   R +PRQ
Sbjct: 6   LMKESFVTTSLDKVINWARTGSLWPMTFGLACCAVEMMEAGSSRYDLDRFGIVFRPTPRQ 65

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           SD+MIVAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSY+VVRGCDRIVPV
Sbjct: 66  SDLMIVAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYAVVRGCDRIVPV 125

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           D+YVPGCPPTAEAL+YGIL LQ KIRR   +
Sbjct: 126 DVYVPGCPPTAEALLYGILQLQDKIRRTNTI 156


>gi|218463554|ref|ZP_03503645.1| NADH dehydrogenase subunit B [Rhizobium etli Kim 5]
          Length = 186

 Score =  248 bits (634), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 137/183 (74%), Positives = 154/183 (84%)

Query: 2   GLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFG 61
            LT  +    + Q      + D     I++E+  KGFLVTS D+L+TWARTGSLMWMTFG
Sbjct: 3   PLTQPHSAPANFQFPGEQRQGDPMMGTINAELADKGFLVTSTDELITWARTGSLMWMTFG 62

Query: 62  LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPR 121
           LACCA+EMMQ SMPRYD+ERFG APR SPRQSD+MIVAGTL NKMA ALR+VYDQMPEPR
Sbjct: 63  LACCAIEMMQMSMPRYDIERFGVAPRGSPRQSDLMIVAGTLCNKMAPALRKVYDQMPEPR 122

Query: 122 YVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
           YVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGILLLQ+KIRR G
Sbjct: 123 YVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILLLQRKIRRNG 182

Query: 182 NVK 184
           +++
Sbjct: 183 SIE 185


>gi|94496481|ref|ZP_01303058.1| NuoB, NADH dehydrogenase I, B subunit [Sphingomonas sp. SKA58]
 gi|94424227|gb|EAT09251.1| NuoB, NADH dehydrogenase I, B subunit [Sphingomonas sp. SKA58]
          Length = 172

 Score =  248 bits (634), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 124/170 (72%), Positives = 144/170 (84%)

Query: 15  SSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASM 74
                +     F+ ++ E++ KGFLVTS ++L  WARTGSL WMTFGLACCAVEM+  +M
Sbjct: 2   PPVGTQPDQDFFNALNGEVSDKGFLVTSTEELFQWARTGSLWWMTFGLACCAVEMIHVNM 61

Query: 75  PRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGG 134
           PRYD+ERFG APRASPRQSDVMIVAGTL NKMA ALR+VYDQM  P+YVISMGSCANGGG
Sbjct: 62  PRYDMERFGAAPRASPRQSDVMIVAGTLCNKMAPALRKVYDQMSNPKYVISMGSCANGGG 121

Query: 135 YYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           YYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG++ LQ+KIRR+G ++
Sbjct: 122 YYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGVMQLQRKIRRIGTIE 171


>gi|212528728|ref|XP_002144521.1| NADH-ubiquinone oxidoreductase subunit B, putative [Penicillium
           marneffei ATCC 18224]
 gi|210073919|gb|EEA28006.1| NADH-ubiquinone oxidoreductase subunit B, putative [Penicillium
           marneffei ATCC 18224]
          Length = 225

 Score =  248 bits (633), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 119/186 (63%), Positives = 139/186 (74%), Gaps = 2/186 (1%)

Query: 1   MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWM 58
           M +T + +++ S  S  +  KV  +    S E       + +T++DQ+  WAR  SL  M
Sbjct: 35  MPVTAIERQLESSSSLTASGKVRREVPLPSQEKKEGAMQYALTTLDQIANWARQSSLWPM 94

Query: 59  TFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMP 118
           TFGLACCAVEMM  S PRYD +R G   RASPRQSDVMIVAGTLTNKMA ALR+VYDQMP
Sbjct: 95  TFGLACCAVEMMHLSTPRYDQDRLGIIFRASPRQSDVMIVAGTLTNKMAPALRQVYDQMP 154

Query: 119 EPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           +PR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT+EAL+YGI  LQKK+R
Sbjct: 155 DPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTSEALMYGIFQLQKKMR 214

Query: 179 RVGNVK 184
                +
Sbjct: 215 HTKITR 220


>gi|220934163|ref|YP_002513062.1| NADH-quinone oxidoreductase, B subunit [Thioalkalivibrio sp.
           HL-EbGR7]
 gi|238065221|sp|B8GNY6|NUOB_THISH RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|219995473|gb|ACL72075.1| NADH-quinone oxidoreductase, B subunit [Thioalkalivibrio sp.
           HL-EbGR7]
          Length = 158

 Score =  248 bits (633), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 118/151 (78%), Positives = 128/151 (84%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           +  KGF+ TS D+L+ WARTGSL  MTFGLACCAVEMM A   RYDL+RFG   R SPRQ
Sbjct: 6   VLEKGFVTTSADKLINWARTGSLWPMTFGLACCAVEMMHAGASRYDLDRFGVVFRPSPRQ 65

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           SDVMIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSY+VVRGCDRIVPV
Sbjct: 66  SDVMIVAGTLVNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYAVVRGCDRIVPV 125

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           DIYVPGCPPTAEAL+YGIL LQ KIRR   +
Sbjct: 126 DIYVPGCPPTAEALLYGILQLQNKIRRTNTI 156


>gi|194595689|gb|ACF77132.1| NADH dehydrogenase subunit B [Azospirillum brasilense]
          Length = 180

 Score =  248 bits (633), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 125/183 (68%), Positives = 138/183 (75%), Gaps = 5/183 (2%)

Query: 1   MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTF 60
           MG+       I           DA    ++ EI  KGF+    + ++ WARTGSL  MTF
Sbjct: 1   MGVEAAKLAPIPPGPEQ-----DAYLRAVTEEIQEKGFITAKYEDVLAWARTGSLWPMTF 55

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           GLACCAVEM+ A M RYDL+RFG  PR SPRQSD MIVAGTLTNKMA ALR+VYDQMPEP
Sbjct: 56  GLACCAVEMIHAYMSRYDLDRFGVIPRPSPRQSDCMIVAGTLTNKMAPALRKVYDQMPEP 115

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           R+VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQKKIRR 
Sbjct: 116 RWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALVYGILQLQKKIRRG 175

Query: 181 GNV 183
             +
Sbjct: 176 NRI 178


>gi|114569906|ref|YP_756586.1| NADH dehydrogenase subunit B [Maricaulis maris MCS10]
 gi|122316124|sp|Q0APY9|NUOB_MARMM RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|114340368|gb|ABI65648.1| NADH dehydrogenase subunit B [Maricaulis maris MCS10]
          Length = 188

 Score =  248 bits (633), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 139/170 (81%), Positives = 150/170 (88%)

Query: 15  SSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASM 74
                +K D  F  +S  +  KGF+V + D LVTWARTGSLMWMTFGLACCAVEMMQASM
Sbjct: 18  PGYDPKKHDPFFDGVSDALADKGFVVAAADDLVTWARTGSLMWMTFGLACCAVEMMQASM 77

Query: 75  PRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGG 134
           PRYD+ERFGFAPRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGG
Sbjct: 78  PRYDVERFGFAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGG 137

Query: 135 YYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           YYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQKKIRR G+++
Sbjct: 138 YYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALVYGILQLQKKIRREGSIE 187


>gi|83592891|ref|YP_426643.1| NADH dehydrogenase subunit B [Rhodospirillum rubrum ATCC 11170]
 gi|123526697|sp|Q2RU39|NUOB_RHORT RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|83575805|gb|ABC22356.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit [Rhodospirillum
           rubrum ATCC 11170]
          Length = 185

 Score =  248 bits (633), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 122/183 (66%), Positives = 142/183 (77%)

Query: 1   MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTF 60
           MG++T       G         D    +++ EI  KGF++++VD LV WAR GSL  MTF
Sbjct: 1   MGVSTPVIVPRGGAPVPPGPDQDLILGQVAREIEEKGFVLSNVDSLVNWARAGSLWPMTF 60

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           GLACCA+EM+  +  RYDL+RFG   R SPRQSDVMIVAGTLTNKMA ALR+VYDQM EP
Sbjct: 61  GLACCALEMIHCACARYDLDRFGTVFRPSPRQSDVMIVAGTLTNKMAPALRKVYDQMAEP 120

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           R+VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT+EAL+YG+L LQKKI+R 
Sbjct: 121 RWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTSEALLYGVLQLQKKIKRT 180

Query: 181 GNV 183
           G +
Sbjct: 181 GAL 183


>gi|241518517|ref|YP_002979145.1| NADH-quinone oxidoreductase, B subunit [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240862930|gb|ACS60594.1| NADH-quinone oxidoreductase, B subunit [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 185

 Score =  248 bits (633), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 136/184 (73%), Positives = 153/184 (83%)

Query: 1   MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTF 60
           M  +   +  ++ Q        D     I++E+  KGFLVTS D+L+TWARTGSLMWMTF
Sbjct: 1   MSQSDHPRSPMNFQYPGEQTGGDPTMGMINAELADKGFLVTSTDELITWARTGSLMWMTF 60

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           GLACCA+EMMQ SMPRYD+ERFG APR SPRQSD+MIVAGTL NKMA ALR+VYDQMPEP
Sbjct: 61  GLACCAIEMMQMSMPRYDVERFGVAPRGSPRQSDLMIVAGTLCNKMAPALRKVYDQMPEP 120

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           RYVISMGSCANGGGYYHYSYSVVRGCDR+VPVDIYVPGCPPTAEAL+YGILLLQKKIRR 
Sbjct: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRVVPVDIYVPGCPPTAEALLYGILLLQKKIRRN 180

Query: 181 GNVK 184
           G ++
Sbjct: 181 GTIE 184


>gi|195117025|ref|XP_002003051.1| GI24498 [Drosophila mojavensis]
 gi|193913626|gb|EDW12493.1| GI24498 [Drosophila mojavensis]
          Length = 205

 Score =  248 bits (633), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 113/178 (63%), Positives = 135/178 (75%)

Query: 7   NQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCA 66
            QK +     C +            +     + VT +D L+ W R GS+  MTFGLACCA
Sbjct: 23  KQKTMHNVDKCGMPARKGYSPFGRKQPRWGEWAVTRLDDLLNWGRKGSVWPMTFGLACCA 82

Query: 67  VEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISM 126
           VEMM  + PRYD++RFG   RASPRQ+D++IVAGTLTNKMA ALR++YDQMPEPR+VISM
Sbjct: 83  VEMMHIAGPRYDMDRFGVVFRASPRQTDLIIVAGTLTNKMAPALRKIYDQMPEPRWVISM 142

Query: 127 GSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           GSCANGGGYYHYSYSVVRGCDRI+PVDIYVPGCPPTAEAL+YGIL LQKKI+R+  ++
Sbjct: 143 GSCANGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALLYGILQLQKKIKRMRTLQ 200


>gi|91088057|ref|XP_967271.1| PREDICTED: similar to CG9172 CG9172-PA [Tribolium castaneum]
 gi|270012769|gb|EFA09217.1| hypothetical protein TcasGA2_TC006185 [Tribolium castaneum]
          Length = 202

 Score =  248 bits (633), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 107/175 (61%), Positives = 131/175 (74%)

Query: 10  IISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEM 69
                 + S E     +S          + +  +D L+ W R  S+  +TFGLACCAVEM
Sbjct: 23  FAQPVRNQSTEVAPRPYSPFQKTSNLAEYSLARLDDLLNWGRKSSMWPLTFGLACCAVEM 82

Query: 70  MQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSC 129
           M  + PRYD++R+G   RASPRQ+DV+I+AGTLTNKMA ALR+VYDQMPEPR+VISMGSC
Sbjct: 83  MHIAAPRYDMDRYGVVFRASPRQADVIIIAGTLTNKMAPALRKVYDQMPEPRWVISMGSC 142

Query: 130 ANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           ANGGGYYHYSYSVVRGCDRI+PVDIYVPGCPPTAEAL+YG+L LQKK++R   ++
Sbjct: 143 ANGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALLYGVLQLQKKVKRYNALQ 197


>gi|195033324|ref|XP_001988662.1| GH11286 [Drosophila grimshawi]
 gi|193904662|gb|EDW03529.1| GH11286 [Drosophila grimshawi]
          Length = 209

 Score =  248 bits (633), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 115/178 (64%), Positives = 136/178 (76%)

Query: 7   NQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCA 66
            QK +       +           +++    + VT +D L+ W R GS+  MTFGLACCA
Sbjct: 27  QQKTMHDVDKHGVPSRKGYSPFGRNQLGWGEWTVTRLDDLLNWGRKGSIWPMTFGLACCA 86

Query: 67  VEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISM 126
           VEMM  + PRYD++RFG   RASPRQ+D+MIVAGTLTNKMA ALR+VYDQMPEPR+VISM
Sbjct: 87  VEMMHIAAPRYDMDRFGVVFRASPRQTDLMIVAGTLTNKMAPALRKVYDQMPEPRWVISM 146

Query: 127 GSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           GSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQKKI+R+  ++
Sbjct: 147 GSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALMYGILQLQKKIKRMRTLQ 204


>gi|170069760|ref|XP_001869339.1| NADH dehydrogenase iron-sulfur protein 7, mitochondrial [Culex
           quinquefasciatus]
 gi|167865642|gb|EDS29025.1| NADH dehydrogenase iron-sulfur protein 7, mitochondrial [Culex
           quinquefasciatus]
          Length = 212

 Score =  248 bits (633), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 108/145 (74%), Positives = 127/145 (87%)

Query: 40  VTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVA 99
           V  +D ++ W R GS+  +TFGLACCAVEMM  + PRYD++RFG   RASPRQ+DV+IVA
Sbjct: 63  VARLDDVLNWGRKGSIWPLTFGLACCAVEMMHIAAPRYDMDRFGVVFRASPRQADVIIVA 122

Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGC 159
           GTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRI+PVDIYVPGC
Sbjct: 123 GTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVPGC 182

Query: 160 PPTAEALIYGILLLQKKIRRVGNVK 184
           PPTAEAL+YGIL LQKK++R+  ++
Sbjct: 183 PPTAEALLYGILQLQKKVKRMKTLQ 207


>gi|326433088|gb|EGD78658.1| NDUFS7 protein [Salpingoeca sp. ATCC 50818]
          Length = 214

 Score =  248 bits (633), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 111/147 (75%), Positives = 128/147 (87%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           + +  +D LV WAR  S+  MTFGLACCAVEMM  + PRYD++RFG   RASPRQSDVMI
Sbjct: 63  YALAKLDDLVNWARKSSMWPMTFGLACCAVEMMHVAAPRYDMDRFGIVFRASPRQSDVMI 122

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGTLTNKMA ALR+VYDQMPEPR+V+SMGSCANGGGYYHYSY+VVRGCDRIVPVDIYVP
Sbjct: 123 VAGTLTNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYAVVRGCDRIVPVDIYVP 182

Query: 158 GCPPTAEALIYGILLLQKKIRRVGNVK 184
           GCPPTAEAL+YG+L LQKKI+R  +++
Sbjct: 183 GCPPTAEALLYGLLQLQKKIKRDKSLQ 209


>gi|195479097|ref|XP_002100761.1| GE15999 [Drosophila yakuba]
 gi|194188285|gb|EDX01869.1| GE15999 [Drosophila yakuba]
          Length = 221

 Score =  248 bits (633), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 109/189 (57%), Positives = 143/189 (75%), Gaps = 6/189 (3%)

Query: 2   GLTTVNQKIISGQSSCSLEKVDADFSRI------SSEITHKGFLVTSVDQLVTWARTGSL 55
            +  +N  ++  Q +  + +V  +  +       + + +   + +  +D L+ W R GS+
Sbjct: 28  AVPALNMVLMRQQQTLPVAEVAQNLPKKGYSPFGTKQSSVAEWSLARLDDLLNWGRKGSI 87

Query: 56  MWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYD 115
             +TFGLACCAVEMM  + PRYD++R+G   RASPRQ+DV+IVAGTLTNKMA ALR+VYD
Sbjct: 88  WPLTFGLACCAVEMMHIAAPRYDMDRYGVVFRASPRQADVIIVAGTLTNKMAPALRKVYD 147

Query: 116 QMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175
           QMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRI+PVDIYVPGCPPTAEAL+YG+L LQK
Sbjct: 148 QMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALMYGVLQLQK 207

Query: 176 KIRRVGNVK 184
           K++R+  ++
Sbjct: 208 KVKRMKTLQ 216


>gi|320167168|gb|EFW44067.1| NADH2 dehydrogenase subunit 22K [Capsaspora owczarzaki ATCC 30864]
          Length = 206

 Score =  248 bits (633), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 116/165 (70%), Positives = 133/165 (80%)

Query: 20  EKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDL 79
           + + + F    +      F ++ +D LV W RTGS+  MTFGLACCAVEMMQA+  RYD 
Sbjct: 37  KPIKSSFPASLAPANQAEFALSKLDALVNWGRTGSVWPMTFGLACCAVEMMQAAAARYDF 96

Query: 80  ERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS 139
           +RFG   RASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYS
Sbjct: 97  DRFGIVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYS 156

Query: 140 YSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           Y+VVRGCDRIVPVD+YVPGCPPTAEAL+YGIL LQKKI+R    +
Sbjct: 157 YAVVRGCDRIVPVDVYVPGCPPTAEALLYGILQLQKKIKRSNQAQ 201


>gi|296420699|ref|XP_002839906.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295636113|emb|CAZ84097.1| unnamed protein product [Tuber melanosporum]
          Length = 213

 Score =  248 bits (633), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 118/180 (65%), Positives = 142/180 (78%), Gaps = 3/180 (1%)

Query: 8   QKIISGQSSCSLEKVDADFSRISSEITHKG---FLVTSVDQLVTWARTGSLMWMTFGLAC 64
              ++ + S S+++ +     + S++  KG   +++TS+DQ+  WAR GSL  MTFGLAC
Sbjct: 29  PTSLAPRDSSSIDRSNRREVLLPSQVPKKGVMQYVLTSLDQVANWARQGSLWPMTFGLAC 88

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           CAVEMM  S PRYD +R G   RASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPR+V+
Sbjct: 89  CAVEMMHLSTPRYDQDRLGIIFRASPRQSDVMIVAGTLTNKMAPALRQVYDQMPEPRWVV 148

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           SMGSCANGGGYYHYSYSVVRGCDRIVPVD+YVPGCPPT+EAL+YGIL LQKK+R     +
Sbjct: 149 SMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTSEALMYGILQLQKKMRNTKITR 208


>gi|294677055|ref|YP_003577670.1| NADH-quinone oxidoreductase subunit B [Rhodobacter capsulatus SB
           1003]
 gi|6647658|sp|O84970|NUOB_RHOCA RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|3282560|gb|AAC24986.1| NUOB [Rhodobacter capsulatus]
 gi|294475875|gb|ADE85263.1| NADH-quinone oxidoreductase, B subunit [Rhodobacter capsulatus SB
           1003]
          Length = 177

 Score =  247 bits (632), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 124/155 (80%), Positives = 141/155 (90%)

Query: 29  ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88
           ++ ++  KGFL+T+ + ++ WAR GSL WMTFGLACCAVEMM  +MPRYD+ER+GFAPRA
Sbjct: 21  LNRDLQDKGFLLTTAEDIINWARNGSLHWMTFGLACCAVEMMHTAMPRYDVERYGFAPRA 80

Query: 89  SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 148
           SPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR
Sbjct: 81  SPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 140

Query: 149 IVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           IVPVDIYVPGCPP+AEAL+YGIL LQ+KIRR G +
Sbjct: 141 IVPVDIYVPGCPPSAEALMYGILQLQRKIRRTGTL 175


>gi|83858414|ref|ZP_00951936.1| NADH dehydrogenase beta subunit [Oceanicaulis alexandrii HTCC2633]
 gi|83853237|gb|EAP91089.1| NADH dehydrogenase beta subunit [Oceanicaulis alexandrii HTCC2633]
          Length = 187

 Score =  247 bits (632), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 135/182 (74%), Positives = 149/182 (81%)

Query: 3   LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62
           +        +       +K D  F  +S  +  KGFLV + D L+TWARTGSLMWMTFGL
Sbjct: 5   IVPAGSAATAKTPHYDPKKHDPFFDGVSDALADKGFLVAAADDLITWARTGSLMWMTFGL 64

Query: 63  ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122
           ACCAVEMMQASMPRYD+ER G APR SPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRY
Sbjct: 65  ACCAVEMMQASMPRYDVERLGAAPRGSPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRY 124

Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
           VISMGSCANGGGYYHYSYSVVRGCDRIVP+DIYVPGCPPTAEAL+YGIL LQKKIRR G+
Sbjct: 125 VISMGSCANGGGYYHYSYSVVRGCDRIVPIDIYVPGCPPTAEALVYGILQLQKKIRREGS 184

Query: 183 VK 184
           ++
Sbjct: 185 IE 186


>gi|290562629|gb|ADD38710.1| NADH dehydrogenase iron-sulfur protein 7, mitochondrial
           [Lepeophtheirus salmonis]
          Length = 211

 Score =  247 bits (632), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 109/154 (70%), Positives = 128/154 (83%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP 90
            +     ++V  +D L+ W R  SL  +TFGLACCAVEMM  + PRYD++R+G   RASP
Sbjct: 53  DKKNKAEYVVARLDDLINWGRKTSLWPLTFGLACCAVEMMHIAAPRYDMDRYGVVFRASP 112

Query: 91  RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150
           RQ+DV++VAGTLTNKMA A R+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIV
Sbjct: 113 RQADVILVAGTLTNKMAPAFRKVYDQMLEPRWVISMGSCANGGGYYHYSYSVVRGCDRIV 172

Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           PVDIYVPGCPPTAEAL+YGIL LQKKI+R+ NV+
Sbjct: 173 PVDIYVPGCPPTAEALMYGILQLQKKIKRMKNVQ 206


>gi|288958988|ref|YP_003449329.1| NADH dehydrogenase I chain B [Azospirillum sp. B510]
 gi|288911296|dbj|BAI72785.1| NADH dehydrogenase I chain B [Azospirillum sp. B510]
          Length = 188

 Score =  247 bits (632), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 122/167 (73%), Positives = 136/167 (81%)

Query: 17  CSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPR 76
               + DA    +S EI  KGF++   + L+ WARTGSL  MTFGLACCAVEM+ A M R
Sbjct: 20  PPGPEQDAYIRAVSDEIQDKGFVLAKYEDLLAWARTGSLWPMTFGLACCAVEMIHAYMSR 79

Query: 77  YDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY 136
           YDL+RFG  PR SPRQSD MIVAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYY
Sbjct: 80  YDLDRFGVIPRPSPRQSDCMIVAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYY 139

Query: 137 HYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           HYSY+VVRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQKKI+R   +
Sbjct: 140 HYSYAVVRGCDRIVPVDIYVPGCPPTAEALVYGILQLQKKIKRGNRI 186


>gi|225718368|gb|ACO15030.1| NADH dehydrogenase iron-sulfur protein 7, mitochondrial precursor
           [Caligus clemensi]
          Length = 211

 Score =  247 bits (632), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 110/157 (70%), Positives = 130/157 (82%)

Query: 28  RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
           R+  +     ++V  +D L+ W R  SL  +TFGLACCAVEMM  + PRYD++R+G   R
Sbjct: 50  RVDIKKNKAEYVVARLDDLINWGRKTSLWPLTFGLACCAVEMMHIAAPRYDMDRYGVVFR 109

Query: 88  ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCD 147
           ASPRQ+DV++VAGTLTNKMA A R+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCD
Sbjct: 110 ASPRQADVILVAGTLTNKMAPAFRKVYDQMLEPRWVISMGSCANGGGYYHYSYSVVRGCD 169

Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           RIVPVDIYVPGCPPTAEAL+YGIL LQKKI+R+ NV+
Sbjct: 170 RIVPVDIYVPGCPPTAEALMYGILQLQKKIKRMKNVQ 206


>gi|194894035|ref|XP_001977994.1| GG19352 [Drosophila erecta]
 gi|190649643|gb|EDV46921.1| GG19352 [Drosophila erecta]
          Length = 221

 Score =  247 bits (632), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 109/189 (57%), Positives = 143/189 (75%), Gaps = 6/189 (3%)

Query: 2   GLTTVNQKIISGQSSCSLEKVDADFSRI------SSEITHKGFLVTSVDQLVTWARTGSL 55
            +  +N  ++  Q +  + +V  +  +       + + +   + +  +D L+ W R GS+
Sbjct: 28  AVPALNMVLVRQQQTLPVAEVAQNLPKKGYSPFGTKQSSVAEWSLARLDDLLNWGRKGSI 87

Query: 56  MWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYD 115
             +TFGLACCAVEMM  + PRYD++R+G   RASPRQ+DV+IVAGTLTNKMA ALR+VYD
Sbjct: 88  WPLTFGLACCAVEMMHIAAPRYDMDRYGVVFRASPRQADVIIVAGTLTNKMAPALRKVYD 147

Query: 116 QMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175
           QMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRI+PVDIYVPGCPPTAEAL+YG+L LQK
Sbjct: 148 QMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALMYGVLQLQK 207

Query: 176 KIRRVGNVK 184
           K++R+  ++
Sbjct: 208 KVKRMKTLQ 216


>gi|312116344|ref|YP_004013940.1| NADH-quinone oxidoreductase subunit beta [Rhodomicrobium vannielii
           ATCC 17100]
 gi|311221473|gb|ADP72841.1| NADH-quinone oxidoreductase, B subunit [Rhodomicrobium vannielii
           ATCC 17100]
          Length = 184

 Score =  247 bits (632), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 128/172 (74%), Positives = 147/172 (85%)

Query: 13  GQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQA 72
                       DF  +++++  KGFLVTS + ++ WARTGSLMWMTFGLACCAVEM+Q 
Sbjct: 12  DTPGRPGAGAAVDFDGLNAQLADKGFLVTSTEDVINWARTGSLMWMTFGLACCAVEMIQV 71

Query: 73  SMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANG 132
           SMPRYDLERFG APRASPRQSD+MIVAGTL NKMA ALR+VYDQMPEPRYVISMGSCANG
Sbjct: 72  SMPRYDLERFGTAPRASPRQSDLMIVAGTLCNKMAPALRKVYDQMPEPRYVISMGSCANG 131

Query: 133 GGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           GGYYHYSYSVVRGCDR+VPVD+Y+PGCPP+AEAL+YGI+LLQKKIRR G ++
Sbjct: 132 GGYYHYSYSVVRGCDRVVPVDVYIPGCPPSAEALLYGIMLLQKKIRRTGTIE 183


>gi|84000019|ref|NP_001033111.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 7,
           mitochondrial precursor [Bos taurus]
 gi|1171865|sp|P42026|NDUS7_BOVIN RecName: Full=NADH dehydrogenase [ubiquinone] iron-sulfur protein
           7, mitochondrial; AltName: Full=Complex I-20kD;
           Short=CI-20kD; AltName: Full=NADH-ubiquinone
           oxidoreductase 20 kDa subunit; AltName: Full=PSST
           subunit; Flags: Precursor
 gi|599691|emb|CAA46154.1| PSST subunit of the NADH: ubiquinone oxidoreductase complex [Bos
           taurus]
 gi|83638667|gb|AAI09717.1| NADH dehydrogenase (ubiquinone) Fe-S protein 7, 20kDa
           (NADH-coenzyme Q reductase) [Bos taurus]
 gi|296485358|gb|DAA27473.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 7,
           mitochondrial precursor [Bos taurus]
          Length = 216

 Score =  247 bits (632), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 117/174 (67%), Positives = 139/174 (79%), Gaps = 1/174 (0%)

Query: 12  SGQSSCSLEKVDADFSRISSEITHKG-FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMM 70
              +  ++ +  A   + ++  + +G ++V  +D L+ WAR  SL  MTFGLACCAVEMM
Sbjct: 38  PSSTQPAVSQARAVVPKPAALPSSRGEYVVAKLDDLINWARRSSLWPMTFGLACCAVEMM 97

Query: 71  QASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCA 130
             + PRYD++RFG   RASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYV+SMGSCA
Sbjct: 98  HMAAPRYDMDRFGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCA 157

Query: 131 NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQKKI+R   ++
Sbjct: 158 NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKIKREKRLR 211


>gi|150406467|ref|YP_001315111.1| NADH dehydrogenase subunit 10 [Chlorokybus atmophyticus]
 gi|126507704|gb|ABO15101.1| NADH dehydrogenase subunit 10 [Chlorokybus atmophyticus]
          Length = 158

 Score =  247 bits (631), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 118/147 (80%), Positives = 128/147 (87%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           +L++ VDQL+ WAR GSL  MTFGLACCAVEMM     RYDL+RFG   R SPRQSDVMI
Sbjct: 7   YLISKVDQLIHWARKGSLWPMTFGLACCAVEMMHTGASRYDLDRFGIIFRPSPRQSDVMI 66

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP
Sbjct: 67  VAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 126

Query: 158 GCPPTAEALIYGILLLQKKIRRVGNVK 184
           GCPPTAEAL+YGIL LQKK++R  N K
Sbjct: 127 GCPPTAEALLYGILQLQKKMKRTKNTK 153


>gi|125772981|ref|XP_001357749.1| GA15185 [Drosophila pseudoobscura pseudoobscura]
 gi|54637481|gb|EAL26883.1| GA15185 [Drosophila pseudoobscura pseudoobscura]
          Length = 211

 Score =  247 bits (631), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 114/176 (64%), Positives = 137/176 (77%), Gaps = 2/176 (1%)

Query: 9   KIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVE 68
            +         ++  + F R  ++ +   + +  +D L+ W R GSL  MTFGLACCAVE
Sbjct: 33  PVYDDVRQKPAKRGYSPFGR--NQNSWSEWTLARLDDLLNWGRKGSLWPMTFGLACCAVE 90

Query: 69  MMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGS 128
           MM  + PRYD++RFG   RASPRQ+DVMIVAGTLTNKMA ALR+VYDQMPEPR+VISMGS
Sbjct: 91  MMHIAAPRYDMDRFGMVFRASPRQTDVMIVAGTLTNKMAPALRKVYDQMPEPRWVISMGS 150

Query: 129 CANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           CANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG+L LQKK+RR+  ++
Sbjct: 151 CANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGLLQLQKKVRRMRTLQ 206


>gi|119501352|ref|XP_001267433.1| NADH-ubiquinone oxidoreductase subunit B, putative [Neosartorya
           fischeri NRRL 181]
 gi|119415598|gb|EAW25536.1| NADH-ubiquinone oxidoreductase subunit B, putative [Neosartorya
           fischeri NRRL 181]
          Length = 228

 Score =  247 bits (631), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 118/183 (64%), Positives = 138/183 (75%), Gaps = 2/183 (1%)

Query: 4   TTVNQKIISGQSSCSLEKVDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFG 61
           T + ++  SGQ   +  KV  +    S E       +++T++DQ+  WAR  SL  MTFG
Sbjct: 41  TALERQAQSGQPLTASGKVRKEVPLPSQEKKEGAMQYVLTTLDQVANWARQSSLWPMTFG 100

Query: 62  LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPR 121
           LACCAVEMM  S PRYD +R G   RASPRQSDVMIVAGTLTNKMA ALR+VYDQMP+PR
Sbjct: 101 LACCAVEMMHLSTPRYDQDRLGIIFRASPRQSDVMIVAGTLTNKMAPALRQVYDQMPDPR 160

Query: 122 YVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
           +VISMGSCANGGGYYHYSYSVVRGCDRIVPVD+YVPGCPPT+EAL+YGI  LQKK+R   
Sbjct: 161 WVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTSEALMYGIFQLQKKMRHTR 220

Query: 182 NVK 184
             +
Sbjct: 221 ITR 223


>gi|316969245|gb|EFV53373.1| NADH dehydrogenase I, B subunit [Trichinella spiralis]
          Length = 803

 Score =  247 bits (630), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 105/178 (58%), Positives = 132/178 (74%), Gaps = 5/178 (2%)

Query: 9   KIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVE 68
              + +    +      F++++S      + +   D L+ WAR GSL  +TFGLACCA+E
Sbjct: 339 PAEADKPPRDISWTGTPFTKVNS---AAEYALARADDLINWARRGSLWPLTFGLACCAIE 395

Query: 69  MMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRV--YDQMPEPRYVISM 126
           MM  + PRYD++RFG   RASPRQ+D MI+AGT+TNKMA ALRRV  YDQMP+P++VISM
Sbjct: 396 MMHFAAPRYDMDRFGIVFRASPRQADCMIIAGTVTNKMAPALRRVNIYDQMPDPKWVISM 455

Query: 127 GSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           GSCANGGGYYHYSYSVVRGCDRI+PVDIYVPGCPP+AEAL+Y  L LQKKI+ +   +
Sbjct: 456 GSCANGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPSAEALLYAFLQLQKKIKGMTRAQ 513


>gi|261856549|ref|YP_003263832.1| NADH-quinone oxidoreductase subunit beta [Halothiobacillus
           neapolitanus c2]
 gi|261837018|gb|ACX96785.1| NADH-quinone oxidoreductase, B subunit [Halothiobacillus
           neapolitanus c2]
          Length = 159

 Score =  247 bits (630), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 117/151 (77%), Positives = 128/151 (84%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           +  KGF+ TS D+L+ WARTGSL  MTFGLACCAVEMM A   RYDL+RFG   R SPRQ
Sbjct: 6   VLEKGFVTTSADKLINWARTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGVVFRPSPRQ 65

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           SDVMIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSY+VVRGCDRIVPV
Sbjct: 66  SDVMIVAGTLVNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYAVVRGCDRIVPV 125

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           DIYVPGCPPTAEAL+YGI+ LQ KIRR   +
Sbjct: 126 DIYVPGCPPTAEALLYGIIQLQNKIRRTNTI 156


>gi|159124830|gb|EDP49948.1| NADH-ubiquinone oxidoreductase subunit B, putative [Aspergillus
           fumigatus A1163]
          Length = 225

 Score =  247 bits (630), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 106/172 (61%), Positives = 133/172 (77%), Gaps = 1/172 (0%)

Query: 14  QSSCSLEKVDADFSRISSEITHK-GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQA 72
           + + +   +   F++   E   K   ++T+ D L+ WAR GSL  ++FGLACC VEMM A
Sbjct: 49  KHTITNPSLPTSFNQSKEENAGKLHHILTTTDSLINWARQGSLWPLSFGLACCGVEMMAA 108

Query: 73  SMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANG 132
           SMPRYD +R G   RASPRQ+DVM+VAGT+TNKMA ALR++YDQMP+P++VISMGSCANG
Sbjct: 109 SMPRYDQDRQGIIFRASPRQADVMLVAGTVTNKMAPALRQLYDQMPDPKWVISMGSCANG 168

Query: 133 GGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           GGYYH+SYSVVRG DR+VPVDIYVPGCPPT EAL+YGIL L++KI R    +
Sbjct: 169 GGYYHHSYSVVRGVDRLVPVDIYVPGCPPTPEALLYGILQLKRKIERTKVTR 220


>gi|195158809|ref|XP_002020277.1| GL13892 [Drosophila persimilis]
 gi|194117046|gb|EDW39089.1| GL13892 [Drosophila persimilis]
          Length = 205

 Score =  247 bits (630), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 114/176 (64%), Positives = 137/176 (77%), Gaps = 2/176 (1%)

Query: 9   KIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVE 68
            +         ++  + F R  ++ +   + +  +D L+ W R GSL  MTFGLACCAVE
Sbjct: 27  PVYDDVRQKPAKRGYSPFGR--NQNSWSEWTLARLDDLLNWGRKGSLWPMTFGLACCAVE 84

Query: 69  MMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGS 128
           MM  + PRYD++RFG   RASPRQ+DVMIVAGTLTNKMA ALR+VYDQMPEPR+VISMGS
Sbjct: 85  MMHIAAPRYDMDRFGMVFRASPRQTDVMIVAGTLTNKMAPALRKVYDQMPEPRWVISMGS 144

Query: 129 CANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           CANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG+L LQKK+RR+  ++
Sbjct: 145 CANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGLLQLQKKVRRMRTLQ 200


>gi|321466001|gb|EFX76999.1| hypothetical protein DAPPUDRAFT_54753 [Daphnia pulex]
          Length = 167

 Score =  246 bits (629), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 110/160 (68%), Positives = 131/160 (81%)

Query: 25  DFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF 84
            +S   +      + V  +D L+ W R GSL  +TFGLACCAVEMM  + PRYD++R+G 
Sbjct: 3   PYSPFQNTNNMAEYAVARLDDLLNWGRKGSLWPLTFGLACCAVEMMHIAAPRYDMDRYGV 62

Query: 85  APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR 144
             RASPRQ+DV+IVAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVR
Sbjct: 63  VFRASPRQADVIIVAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVR 122

Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           GCDRI+PVDIYVPGCPPTAEAL+YGIL LQKK++R+  ++
Sbjct: 123 GCDRIIPVDIYVPGCPPTAEALMYGILQLQKKVKRMKTIQ 162


>gi|78485163|ref|YP_391088.1| NADH dehydrogenase subunit B [Thiomicrospira crunogena XCL-2]
 gi|123555687|sp|Q31HF9|NUOB_THICR RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|78363449|gb|ABB41414.1| NADH dehydrogenase I chain B [Thiomicrospira crunogena XCL-2]
          Length = 158

 Score =  246 bits (629), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 114/151 (75%), Positives = 127/151 (84%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           +  +G + TS D+L+ WARTGSL  MTFGLACCAVEMM A   RYDL+RFG   R SPRQ
Sbjct: 6   VLKEGVVTTSADKLINWARTGSLWPMTFGLACCAVEMMHAGASRYDLDRFGIIFRPSPRQ 65

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           SDVMIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPV
Sbjct: 66  SDVMIVAGTLVNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPV 125

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           D+YVPGCPPTAEAL+YGI+ LQ KI+R   +
Sbjct: 126 DVYVPGCPPTAEALLYGIIQLQNKIKRTNTI 156


>gi|158455101|gb|AAI53838.1| NDUFS7 protein [Bos taurus]
          Length = 179

 Score =  246 bits (629), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 117/173 (67%), Positives = 139/173 (80%), Gaps = 1/173 (0%)

Query: 13  GQSSCSLEKVDADFSRISSEITHKG-FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQ 71
             +  ++ +  A   + ++  + +G ++V  +D L+ WAR  SL  MTFGLACCAVEMM 
Sbjct: 2   PSTQPAVSQARAVVPKPAALPSSRGEYVVAKLDDLINWARRSSLWPMTFGLACCAVEMMH 61

Query: 72  ASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCAN 131
            + PRYD++RFG   RASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYV+SMGSCAN
Sbjct: 62  MAAPRYDMDRFGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCAN 121

Query: 132 GGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           GGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQKKI+R   ++
Sbjct: 122 GGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKIKREKRLR 174


>gi|255019908|ref|ZP_05291983.1| NADH-ubiquinone oxidoreductase chain B [Acidithiobacillus caldus
           ATCC 51756]
 gi|254970688|gb|EET28175.1| NADH-ubiquinone oxidoreductase chain B [Acidithiobacillus caldus
           ATCC 51756]
          Length = 158

 Score =  246 bits (629), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 115/151 (76%), Positives = 130/151 (86%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           +  KGF+ TS+D +V W+RTGSL  MTFGLACCAVEMM A   RYDL+RFG   R SPRQ
Sbjct: 6   VLEKGFVTTSIDTVVNWSRTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGIIFRPSPRQ 65

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           SDVMIVAGTL NKMA ALR+VYDQMPEPR+V+SMGSCANGGGYYHYSYSVVRGCDRIVPV
Sbjct: 66  SDVMIVAGTLVNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIVPV 125

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           D+YVPGCPPTAEAL++G++ LQKKIRR   +
Sbjct: 126 DVYVPGCPPTAEALLFGLIQLQKKIRRTNTI 156


>gi|195429519|ref|XP_002062806.1| GK19502 [Drosophila willistoni]
 gi|194158891|gb|EDW73792.1| GK19502 [Drosophila willistoni]
          Length = 213

 Score =  246 bits (629), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 110/145 (75%), Positives = 127/145 (87%)

Query: 40  VTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVA 99
           V  +D L+ W R GSL  MTFGLACCAVEMM  + PRYD++RFG   RASPRQ+DV+IVA
Sbjct: 64  VARLDDLINWGRKGSLWPMTFGLACCAVEMMHIAAPRYDMDRFGVVFRASPRQTDVIIVA 123

Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGC 159
           GTLTNKMA ALR++YDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRI+PVDIYVPGC
Sbjct: 124 GTLTNKMAPALRKIYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVPGC 183

Query: 160 PPTAEALIYGILLLQKKIRRVGNVK 184
           PPTAEAL+YGIL LQKK++R+  ++
Sbjct: 184 PPTAEALMYGILQLQKKVKRMKTLQ 208


>gi|198284345|ref|YP_002220666.1| NADH dehydrogenase subunit B [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|218666644|ref|YP_002427007.1| NADH-quinone oxidoreductase, B subunit [Acidithiobacillus
           ferrooxidans ATCC 23270]
 gi|218527968|sp|B5EN70|NUOB2_ACIF5 RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName:
           Full=NADH dehydrogenase I subunit B 2; AltName:
           Full=NDH-1 subunit B 2
 gi|198248866|gb|ACH84459.1| NADH-quinone oxidoreductase, B subunit [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218518857|gb|ACK79443.1| NADH-quinone oxidoreductase, B subunit [Acidithiobacillus
           ferrooxidans ATCC 23270]
          Length = 158

 Score =  246 bits (628), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 114/151 (75%), Positives = 129/151 (85%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           +  KGF+ T++D +V W RTGSL  MTFGLACCAVEMM A   RYDL+RFG   R SPRQ
Sbjct: 6   LLEKGFVTTTIDTVVNWGRTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGIVFRPSPRQ 65

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           SDVMIVAGTL NKMA ALR+VYDQMPEPR+V+SMGSCANGGGYYHYSYS+VRGCDRIVPV
Sbjct: 66  SDVMIVAGTLVNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSIVRGCDRIVPV 125

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           DIYVPGCPPTAEAL++G++ LQKKIRR   +
Sbjct: 126 DIYVPGCPPTAEALLFGLVQLQKKIRRTNTI 156


>gi|70994922|ref|XP_752238.1| NADH-ubiquinone oxidoreductase subunit B [Aspergillus fumigatus
           Af293]
 gi|66849872|gb|EAL90200.1| NADH-ubiquinone oxidoreductase subunit B, putative [Aspergillus
           fumigatus Af293]
 gi|159124846|gb|EDP49963.1| NADH-ubiquinone oxidoreductase subunit B, putative [Aspergillus
           fumigatus A1163]
          Length = 223

 Score =  246 bits (628), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 118/183 (64%), Positives = 137/183 (74%), Gaps = 2/183 (1%)

Query: 4   TTVNQKIISGQSSCSLEKVDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFG 61
           T +  +  SGQ   +  KV  +    S E       +++T++DQ+  WAR  SL  MTFG
Sbjct: 36  TALEHQAQSGQPLTASGKVRKEVPLPSQEKKEGAMQYVLTTLDQVANWARQSSLWPMTFG 95

Query: 62  LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPR 121
           LACCAVEMM  S PRYD +R G   RASPRQSDVMIVAGTLTNKMA ALR+VYDQMP+PR
Sbjct: 96  LACCAVEMMHLSTPRYDQDRLGIIFRASPRQSDVMIVAGTLTNKMAPALRQVYDQMPDPR 155

Query: 122 YVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
           +VISMGSCANGGGYYHYSYSVVRGCDRIVPVD+YVPGCPPT+EAL+YGI  LQKK+R   
Sbjct: 156 WVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTSEALMYGIFQLQKKMRHTR 215

Query: 182 NVK 184
             +
Sbjct: 216 ITR 218


>gi|328854118|gb|EGG03252.1| hypothetical protein MELLADRAFT_78587 [Melampsora larici-populina
           98AG31]
          Length = 258

 Score =  246 bits (628), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 109/179 (60%), Positives = 135/179 (75%)

Query: 4   TTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLA 63
            T+         +  L +  ++   + +      ++++++D++V W R GS+  MTFGLA
Sbjct: 73  PTIASTPSPYSPAFDLARQGSNQLSLETPRNGAEYVLSTIDKIVNWGRQGSMWPMTFGLA 132

Query: 64  CCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYV 123
           CCAVEMM  +  RYD +R G   RASPRQSD+MIVAGTLTNKMA ALR+VYDQMPEPR+V
Sbjct: 133 CCAVEMMHMAAARYDQDRLGVVFRASPRQSDIMIVAGTLTNKMAPALRKVYDQMPEPRWV 192

Query: 124 ISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
           ISMGSCANGGGYYHYSYSVVRGCDRIVPVD+YVPGCPPTAEAL+YG+L LQ+K+RR   
Sbjct: 193 ISMGSCANGGGYYHYSYSVVRGCDRIVPVDLYVPGCPPTAEALLYGMLQLQRKMRRSRK 251


>gi|304322207|ref|YP_003855850.1| NADH dehydrogenase subunit beta [Parvularcula bermudensis HTCC2503]
 gi|303301109|gb|ADM10708.1| NADH dehydrogenase beta subunit [Parvularcula bermudensis HTCC2503]
          Length = 226

 Score =  246 bits (628), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 128/162 (79%), Positives = 144/162 (88%)

Query: 23  DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82
           D  F+ ++ E+  +GF+    D ++ WARTGSLMWMTFGLACCAVEMMQASMPRYD+ERF
Sbjct: 64  DPFFTSLNRELADQGFITAPADAVINWARTGSLMWMTFGLACCAVEMMQASMPRYDMERF 123

Query: 83  GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142
           G APRASPRQSD+MIVAGTLTNKMA ALR+VYDQMP PRYV+SMGSCANGGGYYHYSYSV
Sbjct: 124 GMAPRASPRQSDLMIVAGTLTNKMAPALRKVYDQMPAPRYVVSMGSCANGGGYYHYSYSV 183

Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           VRGCDRIVPVDIYVPGCPPTAEALIYG+L LQKK+RR G ++
Sbjct: 184 VRGCDRIVPVDIYVPGCPPTAEALIYGLLQLQKKMRREGTIR 225


>gi|300311096|ref|YP_003775188.1| NADH dehydrogenase I subunit B [Herbaspirillum seropedicae SmR1]
 gi|300073881|gb|ADJ63280.1| NADH dehydrogenase I (Chain B) oxidoreductase protein
           [Herbaspirillum seropedicae SmR1]
          Length = 158

 Score =  246 bits (628), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 111/151 (73%), Positives = 129/151 (85%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           + ++GF+ TS+D+++ W RTGSL  MTFGLACCAVEMM     RYDL+RFG   R SPRQ
Sbjct: 6   VLNEGFVTTSLDKVINWTRTGSLWPMTFGLACCAVEMMHVGASRYDLDRFGAVFRPSPRQ 65

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           SD+MIVAGTL NKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPV
Sbjct: 66  SDLMIVAGTLCNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPV 125

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           D+YVPGCPPTAEAL+YG++ LQ KI+R   +
Sbjct: 126 DVYVPGCPPTAEALLYGVIQLQNKIKRTNTI 156


>gi|157117673|ref|XP_001658881.1| NADH-plastoquinone oxidoreductase [Aedes aegypti]
 gi|108875970|gb|EAT40195.1| NADH-plastoquinone oxidoreductase [Aedes aegypti]
          Length = 215

 Score =  246 bits (628), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 113/188 (60%), Positives = 140/188 (74%), Gaps = 5/188 (2%)

Query: 2   GLTTVNQKIISGQSSCSLEKVDADFSRI-----SSEITHKGFLVTSVDQLVTWARTGSLM 56
            + TVN   I  + +  + + D           + +     + V  +D ++ W R GS+ 
Sbjct: 23  AVDTVNMNQIREKGTLPVVEKDKPEKLPYSPFGTKQSNWADWTVARLDDVLNWGRKGSIW 82

Query: 57  WMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQ 116
            +TFGLACCAVEMM  + PRYD++RFG   RASPRQ+DV+IVAGTLTNKMA ALR+VYDQ
Sbjct: 83  PLTFGLACCAVEMMHIAAPRYDMDRFGVVFRASPRQADVIIVAGTLTNKMAPALRKVYDQ 142

Query: 117 MPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKK 176
           MPEPR+VISMGSCANGGGYYHYSYSVVRGCDRI+PVDIYVPGCPPTAEAL+YGIL LQKK
Sbjct: 143 MPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALLYGILQLQKK 202

Query: 177 IRRVGNVK 184
           ++R+  ++
Sbjct: 203 VKRMKTLQ 210


>gi|299751278|ref|XP_002911618.1| NADH-ubiquinone oxidoreductase 20 kDa subunit [Coprinopsis cinerea
           okayama7#130]
 gi|298409301|gb|EFI28124.1| NADH-ubiquinone oxidoreductase 20 kDa subunit [Coprinopsis cinerea
           okayama7#130]
          Length = 223

 Score =  246 bits (628), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 111/175 (63%), Positives = 136/175 (77%)

Query: 8   QKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAV 67
           +   S Q   ++ K  ++   + +      ++++++D++  WAR GS+  MTFGLACCAV
Sbjct: 42  ESATSTQPYTAIAKQGSNQLSLETPQNKAEYVLSTLDKVANWARQGSMWPMTFGLACCAV 101

Query: 68  EMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMG 127
           EMM  +  RYD +R G   RASPRQSD+MIVAGTLTNKMA ALR+VYDQMPEPR+VISMG
Sbjct: 102 EMMHMAAARYDQDRLGVVFRASPRQSDIMIVAGTLTNKMAPALRKVYDQMPEPRWVISMG 161

Query: 128 SCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
           SCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG+L LQ+K+RR   
Sbjct: 162 SCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGMLQLQRKMRRSRK 216


>gi|195457088|ref|XP_002075420.1| GK17823 [Drosophila willistoni]
 gi|194171505|gb|EDW86406.1| GK17823 [Drosophila willistoni]
          Length = 229

 Score =  246 bits (628), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 108/187 (57%), Positives = 138/187 (73%), Gaps = 6/187 (3%)

Query: 4   TTVNQKIISGQSSCSLEKVDADFSRI------SSEITHKGFLVTSVDQLVTWARTGSLMW 57
              N   +  Q +  + +      +       + + +   + +  +D L+ W R GS+  
Sbjct: 38  VNANAVWVRQQQTLPVVESPDTLPKKGYSPFGTKQSSMAEWSLARLDDLLNWGRKGSIWP 97

Query: 58  MTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQM 117
           +TFGLACCAVEMM  + PRYD++R+G   RASPRQ+DV+IVAGTLTNKMA ALR+VYDQM
Sbjct: 98  LTFGLACCAVEMMHIAAPRYDMDRYGVVFRASPRQADVIIVAGTLTNKMAPALRKVYDQM 157

Query: 118 PEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
           PEPR+VISMGSCANGGGYYHYSYSVVRGCDRI+PVDIYVPGCPPTAEAL+YG+L LQKK+
Sbjct: 158 PEPRWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALMYGVLQLQKKV 217

Query: 178 RRVGNVK 184
           +R+  ++
Sbjct: 218 KRMKTLQ 224


>gi|58381050|ref|XP_310968.2| AGAP000170-PA [Anopheles gambiae str. PEST]
 gi|55243649|gb|EAA06474.3| AGAP000170-PA [Anopheles gambiae str. PEST]
          Length = 207

 Score =  246 bits (628), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 107/145 (73%), Positives = 127/145 (87%)

Query: 40  VTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVA 99
           V  +D ++ W R GS+  +TFGLACCAVEMM  + PRYD++RFG   RASPRQ+DV+IVA
Sbjct: 58  VARLDDVLNWGRKGSIWPLTFGLACCAVEMMHIAAPRYDMDRFGVVFRASPRQADVIIVA 117

Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGC 159
           GTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRI+PVDIYVPGC
Sbjct: 118 GTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVPGC 177

Query: 160 PPTAEALIYGILLLQKKIRRVGNVK 184
           PPTAEAL+YG+L LQKK++R+  ++
Sbjct: 178 PPTAEALLYGVLQLQKKVKRMKTLQ 202


>gi|259482901|tpe|CBF77819.1| TPA: NADH-ubiquinone oxidoreductase subunit B, putative
           (AFU_orthologue; AFUA_4G05860) [Aspergillus nidulans
           FGSC A4]
          Length = 228

 Score =  245 bits (627), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 117/183 (63%), Positives = 139/183 (75%), Gaps = 2/183 (1%)

Query: 4   TTVNQKIISGQSSCSLEKVDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFG 61
           T + ++  +GQS  +  +V  +    S E       +++T++DQ+  WAR  SL  MTFG
Sbjct: 41  TALERQGNAGQSLTASGQVRREVPLPSQEKKEGAMQYVLTTLDQVANWARQSSLWPMTFG 100

Query: 62  LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPR 121
           LACCAVEMM  S PRYD +R G   RASPRQSDVMIVAGTLTNKMA ALR+VYDQMP+PR
Sbjct: 101 LACCAVEMMHLSTPRYDQDRLGIIFRASPRQSDVMIVAGTLTNKMAPALRQVYDQMPDPR 160

Query: 122 YVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
           +VISMGSCANGGGYYHYSYSVVRGCDRIVPVD+YVPGCPPT+EAL+YGI  LQKK+R   
Sbjct: 161 WVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTSEALMYGIFQLQKKMRHTR 220

Query: 182 NVK 184
             +
Sbjct: 221 ITR 223


>gi|301776330|ref|XP_002923562.1| PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 7,
           mitochondrial-like [Ailuropoda melanoleuca]
          Length = 240

 Score =  245 bits (627), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 116/174 (66%), Positives = 137/174 (78%), Gaps = 1/174 (0%)

Query: 12  SGQSSCSLEKVDADFSRISSEITHKG-FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMM 70
              +  +     A   + ++  + +G ++V  +D L+ WAR  SL  MTFGLACCAVEMM
Sbjct: 62  PSSTQPAASTAGAVVPKSTALPSSRGEYVVAKLDDLINWARRSSLWPMTFGLACCAVEMM 121

Query: 71  QASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCA 130
             + PRYD++RFG   RASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYV+SMGSCA
Sbjct: 122 HMAAPRYDMDRFGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCA 181

Query: 131 NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQ+KI+R   ++
Sbjct: 182 NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQRKIKRERKLR 235


>gi|3342734|gb|AAC27669.1| NUKM_HUMAN, partial CDS [Homo sapiens]
          Length = 158

 Score =  245 bits (627), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 114/151 (75%), Positives = 129/151 (85%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
           +   ++V  +D LV WAR  SL  MTFGLACCAVEMM  + PRYD++RFG   RASPRQS
Sbjct: 3   SRGEYVVAKLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQS 62

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD 153
           DVMIVAGTLTNKMA ALR+VYDQMPEPRYV+SMGSCANGGGYYHYSYSVVRGCDRIVPVD
Sbjct: 63  DVMIVAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPVD 122

Query: 154 IYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           IY+PGCPPTAEAL+YGIL LQ+KI+R   ++
Sbjct: 123 IYIPGCPPTAEALLYGILQLQRKIKRERRLQ 153


>gi|303316328|ref|XP_003068166.1| NADH-ubiquinone oxidoreductase, putative [Coccidioides posadasii
           C735 delta SOWgp]
 gi|240107847|gb|EER26021.1| NADH-ubiquinone oxidoreductase, putative [Coccidioides posadasii
           C735 delta SOWgp]
 gi|320037899|gb|EFW19835.1| NADH-ubiquinone oxidoreductase 20 kDa subunit [Coccidioides
           posadasii str. Silveira]
          Length = 227

 Score =  245 bits (627), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 118/177 (66%), Positives = 134/177 (75%), Gaps = 3/177 (1%)

Query: 11  ISGQSSCSLEKVDADFSRISSEITHKG---FLVTSVDQLVTWARTGSLMWMTFGLACCAV 67
              QSS +  K D     + S+   +G   F +T++DQ+  WAR  SL  MTFGLACCAV
Sbjct: 46  TQTQSSMTQTKKDRREVPLPSQQKKEGAMQFALTTLDQVANWARQSSLWPMTFGLACCAV 105

Query: 68  EMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMG 127
           EMM  S PRYD +R G   RASPRQSDVMIVAGTLTNKMA ALR+VYDQMP+PR+VISMG
Sbjct: 106 EMMHLSTPRYDQDRLGIIFRASPRQSDVMIVAGTLTNKMAPALRQVYDQMPDPRWVISMG 165

Query: 128 SCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           SCANGGGYYHYSYSV RGCDRIVPVDIYVPGCPPT+EAL+YGI  LQKK+R     +
Sbjct: 166 SCANGGGYYHYSYSVTRGCDRIVPVDIYVPGCPPTSEALMYGIFQLQKKMRHTQITR 222


>gi|195123641|ref|XP_002006312.1| GI18637 [Drosophila mojavensis]
 gi|193911380|gb|EDW10247.1| GI18637 [Drosophila mojavensis]
          Length = 223

 Score =  245 bits (627), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 106/155 (68%), Positives = 131/155 (84%)

Query: 30  SSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS 89
           + + +   + +  +D L+ W R GS+  +TFGLACCAVEMM  + PRYD++R+G   RAS
Sbjct: 64  TKQSSMAEWSLARLDDLLNWGRKGSIWPLTFGLACCAVEMMHIAAPRYDMDRYGVVFRAS 123

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQ+DV+IVAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRI
Sbjct: 124 PRQADVIIVAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRI 183

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           +PVDIYVPGCPPTAEAL+YG+L LQKK++R+  ++
Sbjct: 184 IPVDIYVPGCPPTAEALMYGVLQLQKKVKRMKTLQ 218


>gi|121706424|ref|XP_001271474.1| NADH-ubiquinone oxidoreductase subunit B, putative [Aspergillus
           clavatus NRRL 1]
 gi|119399622|gb|EAW10048.1| NADH-ubiquinone oxidoreductase subunit B, putative [Aspergillus
           clavatus NRRL 1]
          Length = 225

 Score =  245 bits (626), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 118/183 (64%), Positives = 136/183 (74%), Gaps = 2/183 (1%)

Query: 4   TTVNQKIISGQSSCSLEKVDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFG 61
           T +  +  SGQ      KV  +    S E       +++T++DQ+  WAR  SL  MTFG
Sbjct: 38  TALEHRSQSGQPLTVSGKVRKEVPLPSQEKKEGAMQYVLTTLDQVANWARQSSLWPMTFG 97

Query: 62  LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPR 121
           LACCAVEMM  S PRYD +R G   RASPRQSDVMIVAGTLTNKMA ALR+VYDQMP+PR
Sbjct: 98  LACCAVEMMHLSTPRYDQDRLGIIFRASPRQSDVMIVAGTLTNKMAPALRQVYDQMPDPR 157

Query: 122 YVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
           +VISMGSCANGGGYYHYSYSVVRGCDRIVPVD+YVPGCPPT+EAL+YGI  LQKK+R   
Sbjct: 158 WVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTSEALMYGIFQLQKKMRHTR 217

Query: 182 NVK 184
             +
Sbjct: 218 ITR 220


>gi|270158113|ref|ZP_06186770.1| NADH-quinone oxidoreductase B subunit [Legionella longbeachae
           D-4968]
 gi|289163622|ref|YP_003453760.1| NADH dehydrogenase I chain B [Legionella longbeachae NSW150]
 gi|269990138|gb|EEZ96392.1| NADH-quinone oxidoreductase B subunit [Legionella longbeachae
           D-4968]
 gi|288856795|emb|CBJ10606.1| NADH dehydrogenase I chain B [Legionella longbeachae NSW150]
          Length = 158

 Score =  245 bits (626), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 115/154 (74%), Positives = 131/154 (85%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP 90
           +E+   GF+ TSV++LV WAR+GS+  MTFGLACCAVEMM A   RYDL+RFG   R SP
Sbjct: 4   AELQKSGFVTTSVEKLVGWARSGSMWPMTFGLACCAVEMMHAGAARYDLDRFGIIFRPSP 63

Query: 91  RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150
           RQSDVMIVAGTL NKMA ALR+VYDQMPEPR+V+SMGSCANGGGYYHYSYSVVRGCDRIV
Sbjct: 64  RQSDVMIVAGTLCNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIV 123

Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           PVD+YVPGCPPTAEAL+YGI+ LQ KIR    ++
Sbjct: 124 PVDVYVPGCPPTAEALLYGIIQLQNKIRHKKILE 157


>gi|126002095|ref|XP_001352261.1| GA21592 [Drosophila pseudoobscura pseudoobscura]
 gi|195175510|ref|XP_002028490.1| GL16625 [Drosophila persimilis]
 gi|54640648|gb|EAL29409.1| GA21592 [Drosophila pseudoobscura pseudoobscura]
 gi|194103687|gb|EDW25730.1| GL16625 [Drosophila persimilis]
          Length = 220

 Score =  245 bits (626), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 106/145 (73%), Positives = 127/145 (87%)

Query: 40  VTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVA 99
           +  +D L+ W R GS+  +TFGLACCAVEMM  + PRYD++R+G   RASPRQ+DV+IVA
Sbjct: 71  LARLDDLLNWGRKGSIWPLTFGLACCAVEMMHIAAPRYDMDRYGVVFRASPRQADVIIVA 130

Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGC 159
           GTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRI+PVDIYVPGC
Sbjct: 131 GTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVPGC 190

Query: 160 PPTAEALIYGILLLQKKIRRVGNVK 184
           PPTAEAL+YG+L LQKK++R+  ++
Sbjct: 191 PPTAEALMYGVLQLQKKVKRMKTLQ 215


>gi|296136705|ref|YP_003643947.1| hypothetical protein Tint_2267 [Thiomonas intermedia K12]
 gi|294340860|emb|CAZ89255.1| NADH-quinone oxidoreductase subunit 6 (NADH dehydrogenase I chain
           6) (NDH-1 subunit 6) [Thiomonas sp. 3As]
 gi|295796827|gb|ADG31617.1| hypothetical protein Tint_2267 [Thiomonas intermedia K12]
          Length = 158

 Score =  245 bits (626), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 112/151 (74%), Positives = 127/151 (84%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           +  +GF+ TS D+L+ W RTGSL  MTFGLACCAVEMM A   RYDL+RFG   R SPRQ
Sbjct: 6   VLQEGFITTSADKLINWTRTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGIVFRPSPRQ 65

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           SD+MIVAGTL NKMA ALR+VYDQM EPR+V+SMGSCANGGGYYHYSYSVVRGCDRIVPV
Sbjct: 66  SDLMIVAGTLCNKMAPALRKVYDQMAEPRWVLSMGSCANGGGYYHYSYSVVRGCDRIVPV 125

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           D+YVPGCPPTAEAL+YG++ LQ KIRR   +
Sbjct: 126 DVYVPGCPPTAEALLYGLIQLQNKIRRTETI 156


>gi|15239782|ref|NP_196738.1| NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial
           [Arabidopsis thaliana]
 gi|2499327|sp|Q42577|NDUS7_ARATH RecName: Full=NADH-ubiquinone oxidoreductase 20 kDa subunit,
           mitochondrial; AltName: Full=Complex I-20kD;
           Short=CI-20kD; Flags: Precursor
 gi|16226316|gb|AAL16132.1|AF428300_1 AT5g11770/T22P22_160 [Arabidopsis thaliana]
 gi|643090|emb|CAA58887.1| NADH dehydrogenase [Arabidopsis thaliana]
 gi|7573391|emb|CAB87695.1| NADH dehydrogenase (ubiquinone) [Arabidopsis thaliana]
 gi|15810287|gb|AAL07031.1| putative NADH dehydrogenase (ubiquinone) [Arabidopsis thaliana]
 gi|20466764|gb|AAM20699.1| NADH dehydrogenase / ubiquinone [Arabidopsis thaliana]
 gi|21537333|gb|AAM61674.1| NADH dehydrogenase ubiquinone [Arabidopsis thaliana]
 gi|22136468|gb|AAM91312.1| NADH dehydrogenase / ubiquinone [Arabidopsis thaliana]
 gi|332004336|gb|AED91719.1| NADH dehydrogenase (ubiquinone) Fe-S protein 7 [Arabidopsis
           thaliana]
          Length = 218

 Score =  245 bits (626), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 114/144 (79%), Positives = 124/144 (86%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           F+++ VD L+ WARTGS+  MTFGLACCAVEMM     RYDL+RFG   R SPRQSD MI
Sbjct: 67  FVISKVDDLMNWARTGSIWPMTFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDCMI 126

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP
Sbjct: 127 VAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 186

Query: 158 GCPPTAEALIYGILLLQKKIRRVG 181
           GCPPTAEAL+YG+L LQKKI R  
Sbjct: 187 GCPPTAEALLYGLLQLQKKINRRK 210


>gi|198284143|ref|YP_002220464.1| NADH dehydrogenase subunit B [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|218667459|ref|YP_002426797.1| NADH-quinone oxidoreductase, B subunit [Acidithiobacillus
           ferrooxidans ATCC 23270]
 gi|218527940|sp|B5EM21|NUOB1_ACIF5 RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName:
           Full=NADH dehydrogenase I subunit B 1; AltName:
           Full=NDH-1 subunit B 1
 gi|238065067|sp|B7J6H2|NUOB_ACIF2 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|198248664|gb|ACH84257.1| NADH-quinone oxidoreductase, B subunit [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218519672|gb|ACK80258.1| NADH-quinone oxidoreductase, B subunit [Acidithiobacillus
           ferrooxidans ATCC 23270]
          Length = 158

 Score =  245 bits (626), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 117/151 (77%), Positives = 130/151 (86%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           I  KGF+ TS+D +V W+RTGSL  MTFGLACCAVEMM A   RYDL+RFG   R SPRQ
Sbjct: 6   ILEKGFVTTSIDTVVNWSRTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGLLFRPSPRQ 65

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           SD+MIVAGTL NKMA ALR+VYDQMPEPR+V+SMGSCANGGGYYHYSYSVVRGCDRIVPV
Sbjct: 66  SDLMIVAGTLVNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIVPV 125

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           DIYVPGCPPTAEALI+G++ LQKKIRR   +
Sbjct: 126 DIYVPGCPPTAEALIFGLIQLQKKIRRTNTI 156


>gi|66770743|gb|AAY54683.1| IP08160p [Drosophila melanogaster]
          Length = 213

 Score =  245 bits (626), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 107/144 (74%), Positives = 125/144 (86%)

Query: 41  TSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAG 100
             +D L+ W R GSL  +TFGLACCAVEMM  + PRYD++R+G   RASPRQ+DV+IVAG
Sbjct: 65  ARLDDLLNWGRKGSLWPLTFGLACCAVEMMHIAAPRYDMDRYGVVFRASPRQADVLIVAG 124

Query: 101 TLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCP 160
           TLTNKMA A R++YDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCP
Sbjct: 125 TLTNKMAPAFRKIYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCP 184

Query: 161 PTAEALIYGILLLQKKIRRVGNVK 184
           PTAEAL+YGIL LQKK++R+  ++
Sbjct: 185 PTAEALMYGILQLQKKVKRMRTLQ 208


>gi|152980178|ref|YP_001353153.1| NADH dehydrogenase I chain B [Janthinobacterium sp. Marseille]
 gi|218527992|sp|A6SY06|NUOB_JANMA RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|151280255|gb|ABR88665.1| NADH dehydrogenase I chain B [Janthinobacterium sp. Marseille]
          Length = 158

 Score =  245 bits (626), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 113/151 (74%), Positives = 128/151 (84%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           + ++GF+ T+ D+L+ W RTGS+  MTFGLACCAVEMM A   RYDL+RFG   R SPRQ
Sbjct: 6   VLNEGFVTTTADKLINWTRTGSMWPMTFGLACCAVEMMHAGASRYDLDRFGVVFRPSPRQ 65

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           SDVMIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPV
Sbjct: 66  SDVMIVAGTLCNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPV 125

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           D+YVPGCPPTAEAL+YGI+ LQ KIRR   +
Sbjct: 126 DVYVPGCPPTAEALLYGIMQLQNKIRRTNTI 156


>gi|195381615|ref|XP_002049543.1| GJ21650 [Drosophila virilis]
 gi|194144340|gb|EDW60736.1| GJ21650 [Drosophila virilis]
          Length = 223

 Score =  245 bits (625), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 106/155 (68%), Positives = 131/155 (84%)

Query: 30  SSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS 89
           + + +   + +  +D L+ W R GS+  +TFGLACCAVEMM  + PRYD++R+G   RAS
Sbjct: 64  TKQASMAEWSMARLDDLLNWGRKGSIWPLTFGLACCAVEMMHIAAPRYDMDRYGVVFRAS 123

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQ+DV+IVAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRI
Sbjct: 124 PRQADVIIVAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRI 183

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           +PVDIYVPGCPPTAEAL+YG+L LQKK++R+  ++
Sbjct: 184 IPVDIYVPGCPPTAEALLYGVLQLQKKVKRMRTLQ 218


>gi|17546780|ref|NP_520182.1| NADH dehydrogenase subunit B [Ralstonia solanacearum GMI1000]
 gi|83746298|ref|ZP_00943351.1| NADH-quinone oxidoreductase chain B [Ralstonia solanacearum UW551]
 gi|207723874|ref|YP_002254272.1| nadh dehydrogenaseI(chain b) protein [Ralstonia solanacearum MolK2]
 gi|207742736|ref|YP_002259128.1| nadh dehydrogenaseI(chain b) protein [Ralstonia solanacearum
           IPO1609]
 gi|81504305|sp|Q8XXQ2|NUOB_RALSO RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|17429080|emb|CAD15768.1| probable nadh dehydrogenaseI(chain b) oxidoreductase protein
           [Ralstonia solanacearum GMI1000]
 gi|83727048|gb|EAP74173.1| NADH-quinone oxidoreductase chain B [Ralstonia solanacearum UW551]
 gi|206589079|emb|CAQ36041.1| nadh dehydrogenaseI(chain b) protein [Ralstonia solanacearum MolK2]
 gi|206594130|emb|CAQ61057.1| nadh dehydrogenaseI(chain b) protein [Ralstonia solanacearum
           IPO1609]
 gi|299066334|emb|CBJ37518.1| NADH-quinone oxidoreductase subunit B [Ralstonia solanacearum
           CMR15]
          Length = 160

 Score =  245 bits (625), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 115/151 (76%), Positives = 128/151 (84%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           + ++GF+ T+ D+L+ W RTGSL  MTFGLACCAVEMM A   RYDL+RFG   R SPRQ
Sbjct: 6   VLNEGFVTTTADKLINWTRTGSLWPMTFGLACCAVEMMHAGASRYDLDRFGVVFRPSPRQ 65

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           SDVMIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPV
Sbjct: 66  SDVMIVAGTLCNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPV 125

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           D+YVPGCPPTAEALIYGI+ LQ KIRR   +
Sbjct: 126 DVYVPGCPPTAEALIYGIIQLQAKIRRTNTI 156


>gi|24651058|ref|NP_651698.1| CG2014 [Drosophila melanogaster]
 gi|7301791|gb|AAF56901.1| CG2014 [Drosophila melanogaster]
          Length = 212

 Score =  245 bits (625), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 107/144 (74%), Positives = 125/144 (86%)

Query: 41  TSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAG 100
             +D L+ W R GSL  +TFGLACCAVEMM  + PRYD++R+G   RASPRQ+DV+IVAG
Sbjct: 64  ARLDDLLNWGRKGSLWPLTFGLACCAVEMMHIAAPRYDMDRYGVVFRASPRQADVLIVAG 123

Query: 101 TLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCP 160
           TLTNKMA A R++YDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCP
Sbjct: 124 TLTNKMAPAFRKIYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCP 183

Query: 161 PTAEALIYGILLLQKKIRRVGNVK 184
           PTAEAL+YGIL LQKK++R+  ++
Sbjct: 184 PTAEALMYGILQLQKKVKRMRTLQ 207


>gi|187929292|ref|YP_001899779.1| NADH dehydrogenase subunit B [Ralstonia pickettii 12J]
 gi|241663483|ref|YP_002981843.1| NADH dehydrogenase subunit B [Ralstonia pickettii 12D]
 gi|309781853|ref|ZP_07676586.1| NADH dehydrogenase (ubiquinone), B subunit [Ralstonia sp.
           5_7_47FAA]
 gi|218528007|sp|B2U7R0|NUOB_RALPJ RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|187726182|gb|ACD27347.1| NADH-quinone oxidoreductase, B subunit [Ralstonia pickettii 12J]
 gi|240865510|gb|ACS63171.1| NADH-quinone oxidoreductase, B subunit [Ralstonia pickettii 12D]
 gi|308919494|gb|EFP65158.1| NADH dehydrogenase (ubiquinone), B subunit [Ralstonia sp.
           5_7_47FAA]
          Length = 160

 Score =  245 bits (625), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 115/151 (76%), Positives = 128/151 (84%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           + ++GF+ T+ D+L+ W RTGSL  MTFGLACCAVEMM A   RYDL+RFG   R SPRQ
Sbjct: 6   VLNEGFVTTTADKLINWTRTGSLWPMTFGLACCAVEMMHAGASRYDLDRFGVVFRPSPRQ 65

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           SDVMIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPV
Sbjct: 66  SDVMIVAGTLCNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPV 125

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           D+YVPGCPPTAEALIYGI+ LQ KIRR   +
Sbjct: 126 DVYVPGCPPTAEALIYGIIQLQAKIRRTNTI 156


>gi|194765240|ref|XP_001964735.1| GF23344 [Drosophila ananassae]
 gi|190615007|gb|EDV30531.1| GF23344 [Drosophila ananassae]
          Length = 212

 Score =  245 bits (625), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 109/155 (70%), Positives = 130/155 (83%)

Query: 30  SSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS 89
            ++ +   + V  +D LV W+R GS+  MTFGLACCAVEMM  + PRYD++R+G   R S
Sbjct: 53  GNQSSTGEWAVARLDDLVNWSRKGSIWPMTFGLACCAVEMMHFAAPRYDMDRYGVLFRES 112

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQ+D MIVAGTLTNKMA ALR+VYD+MP+PR+VISMGSCANGGGYYHYSYSVVRGCDRI
Sbjct: 113 PRQADCMIVAGTLTNKMAPALRKVYDEMPDPRWVISMGSCANGGGYYHYSYSVVRGCDRI 172

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           VPVDIYVPGCPPTAEAL+YG+L LQKKI+R+  V+
Sbjct: 173 VPVDIYVPGCPPTAEALMYGVLQLQKKIKRIKTVQ 207


>gi|88812975|ref|ZP_01128218.1| NADH dehydrogenase beta subunit [Nitrococcus mobilis Nb-231]
 gi|88789753|gb|EAR20877.1| NADH dehydrogenase beta subunit [Nitrococcus mobilis Nb-231]
          Length = 158

 Score =  245 bits (625), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 113/151 (74%), Positives = 128/151 (84%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           +  +G + TS D+L+ WARTGSL  MTFGLACCAVEMM A   RYDL+RFG   R SPRQ
Sbjct: 6   VLERGVVTTSADKLINWARTGSLWPMTFGLACCAVEMMHAGASRYDLDRFGIVFRPSPRQ 65

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           SDVMIVAGTL NKMA ALRRVYDQM +P++VISMGSCANGGGYYHYSY+VVRGCDRIVPV
Sbjct: 66  SDVMIVAGTLVNKMAPALRRVYDQMADPKWVISMGSCANGGGYYHYSYAVVRGCDRIVPV 125

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           D+YVPGCPPTAEAL++GI+ LQKKIRR   +
Sbjct: 126 DVYVPGCPPTAEALLFGIIQLQKKIRRTNTI 156


>gi|30249736|ref|NP_841806.1| NADH dehydrogenase subunit B [Nitrosomonas europaea ATCC 19718]
 gi|75540322|sp|Q82TU4|NUOB_NITEU RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|30180773|emb|CAD85687.1| Respiratory-chain NADH dehydrogenase 20 Kd subunit [Nitrosomonas
           europaea ATCC 19718]
          Length = 158

 Score =  245 bits (625), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 115/151 (76%), Positives = 127/151 (84%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           +  KGF+ TS+D L+ W RTGS+  MTFGLACCAVEMMQ    RYDL+RFG   R SPRQ
Sbjct: 6   VLDKGFVTTSLDSLINWGRTGSMWPMTFGLACCAVEMMQTGASRYDLDRFGIVFRPSPRQ 65

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           SDVMIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPV
Sbjct: 66  SDVMIVAGTLCNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPV 125

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           DIYVPGCPPTAEAL+YGI+ LQ KI+R   +
Sbjct: 126 DIYVPGCPPTAEALLYGIIQLQNKIKRTNTI 156


>gi|300691026|ref|YP_003752021.1| NADH-quinone oxidoreductase subunit B [Ralstonia solanacearum
           PSI07]
 gi|299078086|emb|CBJ50729.1| NADH-quinone oxidoreductase subunit B [Ralstonia solanacearum
           PSI07]
          Length = 160

 Score =  245 bits (625), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 115/151 (76%), Positives = 128/151 (84%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           + ++GF+ T+ D+L+ W RTGSL  MTFGLACCAVEMM A   RYDL+RFG   R SPRQ
Sbjct: 6   VLNEGFVTTTADKLINWTRTGSLWPMTFGLACCAVEMMHAGASRYDLDRFGVVFRPSPRQ 65

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           SDVMIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPV
Sbjct: 66  SDVMIVAGTLCNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPV 125

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           D+YVPGCPPTAEALIYGI+ LQ KIRR   +
Sbjct: 126 DVYVPGCPPTAEALIYGIIQLQAKIRRTNTI 156


>gi|2499328|sp|Q43844|NDUS7_SOLTU RecName: Full=NADH-ubiquinone oxidoreductase 20 kDa subunit,
           mitochondrial; AltName: Full=Complex I-20 kDa;
           Short=CI-20kD; Flags: Precursor
 gi|1235607|emb|CAA65451.1| NADH-ubiquinone oxidoreductase [Solanum tuberosum]
          Length = 213

 Score =  244 bits (624), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 117/181 (64%), Positives = 138/181 (76%), Gaps = 1/181 (0%)

Query: 3   LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62
           L +++Q+  S  ++ S        +  +       ++++ VD L+ WAR GS+  MTFGL
Sbjct: 28  LPSLSQQPASSPAT-SGGAQPPSMNTPAGISKPAEYVISKVDDLMNWARRGSIWPMTFGL 86

Query: 63  ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122
           ACCAVEMM A   RYD +RFG   R SPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPR+
Sbjct: 87  ACCAVEMMHAGAARYDFDRFGIIFRPSPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRW 146

Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
           VISMGSCANGGGYYHYSY+VVRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQKKI R  +
Sbjct: 147 VISMGSCANGGGYYHYSYAVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKINRRKD 206

Query: 183 V 183
           +
Sbjct: 207 L 207


>gi|292493667|ref|YP_003529106.1| NADH-quinone oxidoreductase subunit beta [Nitrosococcus halophilus
           Nc4]
 gi|291582262|gb|ADE16719.1| NADH-quinone oxidoreductase, B subunit [Nitrosococcus halophilus
           Nc4]
          Length = 158

 Score =  244 bits (624), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 116/151 (76%), Positives = 128/151 (84%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           +  +G + T+ D+L+ WARTGSL  MTFGLACCAVEMM A   RYDL+RFG   R SPRQ
Sbjct: 6   VLERGVVTTTADKLINWARTGSLWPMTFGLACCAVEMMHAGASRYDLDRFGVVFRPSPRQ 65

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           SDVMIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPV
Sbjct: 66  SDVMIVAGTLVNKMAPALRKVYDQMSEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPV 125

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           DIYVPGCPPTAEAL+YGI+ LQKKIRR   +
Sbjct: 126 DIYVPGCPPTAEALLYGIIQLQKKIRRNYTI 156


>gi|113170492|ref|YP_717283.1| ndhK [Ostreococcus tauri]
 gi|112806899|emb|CAL36405.1| unnamed protein product [Ostreococcus tauri]
          Length = 166

 Score =  244 bits (624), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 113/155 (72%), Positives = 127/155 (81%)

Query: 29  ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88
            + + +   ++++ VD L+ WAR GSL  MTFGLACCAVEMM     RYDL+RFG   R 
Sbjct: 6   YTGQPSSSEYIISKVDGLINWARQGSLWPMTFGLACCAVEMMHTGAARYDLDRFGMIFRP 65

Query: 89  SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 148
           SPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDR
Sbjct: 66  SPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDR 125

Query: 149 IVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           IVPVDIYVPGCPPTAEAL+YG+L LQKKI +    
Sbjct: 126 IVPVDIYVPGCPPTAEALLYGLLQLQKKISQNKTT 160


>gi|149242844|ref|XP_001526472.1| NADH-ubiquinone oxidoreductase 20 kDa subunit [Lodderomyces
           elongisporus NRRL YB-4239]
 gi|146450595|gb|EDK44851.1| NADH-ubiquinone oxidoreductase 20 kDa subunit [Lodderomyces
           elongisporus NRRL YB-4239]
          Length = 224

 Score =  244 bits (624), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 111/184 (60%), Positives = 134/184 (72%), Gaps = 2/184 (1%)

Query: 3   LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTF 60
            T V  K        + +++  DF  +S +       + +TS+D +  WAR  S   +TF
Sbjct: 36  NTPVASKRYVSSKELTPKELPTDFPLMSQKTASSAVDYALTSLDTIANWARKSSFWPVTF 95

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           GLACCAVEMM  S PRYD +R G   RASPRQSD+MIVAGTLTNKMA ALR+VYDQMP+P
Sbjct: 96  GLACCAVEMMHVSAPRYDQDRLGIIFRASPRQSDIMIVAGTLTNKMAPALRQVYDQMPDP 155

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           ++VISMGSCANGGGYYHYSYSVVRGCDR+VPVDIYVPGCPPTAEAL+YG+  LQKK+ + 
Sbjct: 156 KWVISMGSCANGGGYYHYSYSVVRGCDRVVPVDIYVPGCPPTAEALMYGVFQLQKKMMKT 215

Query: 181 GNVK 184
              +
Sbjct: 216 RITR 219


>gi|114864804|gb|ABI83769.1| NADH-ubiquinone oxidoreductase [Anopheles funestus]
          Length = 207

 Score =  244 bits (624), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 107/144 (74%), Positives = 126/144 (87%)

Query: 40  VTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVA 99
           V  +D ++ W R GS+  +TFGLACCAVEMM  + PRYD++RFG   RASPRQ+DV+IVA
Sbjct: 58  VARLDDVLNWGRKGSIWPLTFGLACCAVEMMHIAAPRYDMDRFGVVFRASPRQADVIIVA 117

Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGC 159
           GTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRI+PVDIYVPGC
Sbjct: 118 GTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVPGC 177

Query: 160 PPTAEALIYGILLLQKKIRRVGNV 183
           PPTAEAL+YG+L LQKK++R+  +
Sbjct: 178 PPTAEALLYGVLQLQKKVKRMKTL 201


>gi|77745495|gb|ABB02646.1| NADH-ubiquinone oxidoreductase subunit-like [Solanum tuberosum]
          Length = 213

 Score =  244 bits (624), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 116/181 (64%), Positives = 139/181 (76%), Gaps = 1/181 (0%)

Query: 3   LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62
           L +++Q+  S  ++    +  +  +  +       ++++ VD L+ WAR GS+  MTFGL
Sbjct: 28  LPSLSQQPASSPATYGGAQPPS-MNTPAGISKPAEYVISKVDDLMNWARRGSIWPMTFGL 86

Query: 63  ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122
           ACCAVEMM A   RYD +RFG   R SPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPR+
Sbjct: 87  ACCAVEMMHAGAARYDFDRFGIIFRPSPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRW 146

Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
           VISMGSCANGGGYYHYSY+VVRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQKKI R  +
Sbjct: 147 VISMGSCANGGGYYHYSYAVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKINRRKD 206

Query: 183 V 183
           +
Sbjct: 207 L 207


>gi|149927542|ref|ZP_01915796.1| NADH dehydrogenase subunit B [Limnobacter sp. MED105]
 gi|149823815|gb|EDM83041.1| NADH dehydrogenase subunit B [Limnobacter sp. MED105]
          Length = 158

 Score =  244 bits (624), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 110/151 (72%), Positives = 127/151 (84%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           + ++GF+ T+ D+L+ W RTGSL  MTFGLACCAVEMM A   RYDL+RFG   R SPRQ
Sbjct: 6   VLNEGFITTTADKLINWGRTGSLWPMTFGLACCAVEMMHAGASRYDLDRFGIIFRPSPRQ 65

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           SD+MIVAGTL NKMA ALR+VYDQM EPR+V+SMGSCANGGGYYHYSYSVVRGCDRIVPV
Sbjct: 66  SDLMIVAGTLCNKMAPALRKVYDQMAEPRWVLSMGSCANGGGYYHYSYSVVRGCDRIVPV 125

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           D+YVPGCPPTAEAL+YG+L LQ KI+    +
Sbjct: 126 DVYVPGCPPTAEALMYGLLQLQNKIKTTSTI 156


>gi|291231230|ref|XP_002735571.1| PREDICTED: NADH dehydrogenase iron-sulfur protein 7,
           mitochondrial-like [Saccoglossus kowalevskii]
          Length = 220

 Score =  244 bits (624), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 114/176 (64%), Positives = 129/176 (73%)

Query: 8   QKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAV 67
            K     S     +        S +     ++VT +D L  WAR  S+  MTFGLACCAV
Sbjct: 39  TKQSQVTSVVPYRQRSTSIVPKSQKKNVGEYVVTGLDHLANWARRSSIWPMTFGLACCAV 98

Query: 68  EMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMG 127
           EMM  + PRYD++RFG   RASPRQSD MIVAGTLTNKMA ALR+VYDQMPEPR+VISMG
Sbjct: 99  EMMHMAAPRYDMDRFGIVFRASPRQSDCMIVAGTLTNKMAPALRKVYDQMPEPRWVISMG 158

Query: 128 SCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           SCANGGGYYHYSYSVVRG DR+VPVDIYVPGCPPTAEAL+YG L LQKKI+R   +
Sbjct: 159 SCANGGGYYHYSYSVVRGVDRVVPVDIYVPGCPPTAEALLYGFLQLQKKIKRQRMI 214


>gi|289741217|gb|ADD19356.1| NADH-ubiquinone oxidoreductase NUFS7/PSST/20 kDa subunit [Glossina
           morsitans morsitans]
          Length = 220

 Score =  244 bits (624), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 108/174 (62%), Positives = 136/174 (78%), Gaps = 2/174 (1%)

Query: 11  ISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMM 70
           +    S   +K  + F   + + +   + +  +D L+ W R  S+  +TFGLACCAVEMM
Sbjct: 44  VVDPKSPLPKKGYSPFG--TKQSSTGEWTMARLDDLLNWGRKSSIWPLTFGLACCAVEMM 101

Query: 71  QASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCA 130
             + PRYD++R+G   RASPRQ+DV+IVAGTLTNKMA ALR+VYDQMPEPR+VISMGSCA
Sbjct: 102 HIAAPRYDMDRYGVVFRASPRQADVIIVAGTLTNKMAPALRKVYDQMPEPRWVISMGSCA 161

Query: 131 NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           NGGGYYHYSYSVVRGCDRI+PVDIYVPGCPPTAEAL+YG+L LQKK++R+  ++
Sbjct: 162 NGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALMYGVLQLQKKVKRMKTLQ 215


>gi|116782796|gb|ABK22662.1| unknown [Picea sitchensis]
          Length = 205

 Score =  244 bits (624), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 117/179 (65%), Positives = 131/179 (73%)

Query: 5   TVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLAC 64
           TV         S SL          +       ++++ +D LV WAR GS+  MTFGLAC
Sbjct: 21  TVAPTKAEAAGSSSLSAQTPYNPSATGLSKPAEYVISKIDALVNWARKGSIWPMTFGLAC 80

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           CAVEMM     RYDL+RFG   R SPRQSD MIVAGTLTNKMA ALR+VYDQMPEPR+VI
Sbjct: 81  CAVEMMHTGAARYDLDRFGIIFRPSPRQSDCMIVAGTLTNKMAPALRKVYDQMPEPRWVI 140

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG+L LQKKI R  ++
Sbjct: 141 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGLLQLQKKIHRRKDL 199


>gi|194765258|ref|XP_001964744.1| GF23350 [Drosophila ananassae]
 gi|190615016|gb|EDV30540.1| GF23350 [Drosophila ananassae]
          Length = 211

 Score =  244 bits (624), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 111/154 (72%), Positives = 129/154 (83%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP 90
            + T   + V  +D L+ W R GS+  MTFGLACCAVEMM  + PRYD++R+G   RASP
Sbjct: 53  DQKTWAEWTVARLDDLLNWGRKGSIWPMTFGLACCAVEMMHIAAPRYDMDRYGVVFRASP 112

Query: 91  RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150
           RQ+D MIVAGTLTNKMA A+R+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRIV
Sbjct: 113 RQADCMIVAGTLTNKMAPAMRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIV 172

Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           PVDIYVPGCPPTAEAL+YGIL LQKKI+R+  ++
Sbjct: 173 PVDIYVPGCPPTAEALMYGILQLQKKIKRMRTIQ 206


>gi|224088884|ref|XP_002308574.1| predicted protein [Populus trichocarpa]
 gi|118481270|gb|ABK92582.1| unknown [Populus trichocarpa]
 gi|222854550|gb|EEE92097.1| predicted protein [Populus trichocarpa]
          Length = 213

 Score =  244 bits (624), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 117/178 (65%), Positives = 131/178 (73%)

Query: 4   TTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLA 63
           TT+         +          S ++       F+++ VD L+ WARTGS+  MTFGLA
Sbjct: 28  TTLPSLSPEPTPAPYTRAPPPSSSSLTGLSKPAEFVISKVDSLMNWARTGSIWPMTFGLA 87

Query: 64  CCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYV 123
           CCAVEMM     RYDL+RFG   R SPRQSD MIVAGTLTNKMA ALR+VYDQMPEPR+V
Sbjct: 88  CCAVEMMHTGAARYDLDRFGIIFRPSPRQSDCMIVAGTLTNKMAPALRKVYDQMPEPRWV 147

Query: 124 ISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
           ISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG+L LQKKI R  
Sbjct: 148 ISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGLLQLQKKIHRRK 205


>gi|134079540|emb|CAK97016.1| unnamed protein product [Aspergillus niger]
          Length = 219

 Score =  244 bits (624), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 110/174 (63%), Positives = 129/174 (74%)

Query: 11  ISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMM 70
            S Q   S        S     +     ++T+ DQ+V WAR GSL  ++FGLACCA+EMM
Sbjct: 41  TSQQDQGSAPPPSTALSAERRPMNMAEHVLTTFDQIVNWARQGSLWPLSFGLACCAIEMM 100

Query: 71  QASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCA 130
             SMPRYD +R G   RASPRQSDVMIVAGT+TNKMA ALR+ YDQMPEPR+VISMGSCA
Sbjct: 101 HVSMPRYDQDRLGIIFRASPRQSDVMIVAGTVTNKMAPALRQCYDQMPEPRWVISMGSCA 160

Query: 131 NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           NGGGYYHYSYS+VRG DRIVPVD+Y+PGCPPTAEA +YG+  LQKKI+R    +
Sbjct: 161 NGGGYYHYSYSIVRGVDRIVPVDVYIPGCPPTAEATLYGVFQLQKKIKRTRITR 214


>gi|195341209|ref|XP_002037203.1| GM12792 [Drosophila sechellia]
 gi|194131319|gb|EDW53362.1| GM12792 [Drosophila sechellia]
          Length = 204

 Score =  244 bits (624), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 108/144 (75%), Positives = 125/144 (86%)

Query: 41  TSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAG 100
             +D L+ W R GSL  +TFGLACCAVEMM  + PRYD++R+G   RASPRQ+DV+IVAG
Sbjct: 56  ARLDDLLNWGRKGSLWPLTFGLACCAVEMMHIAAPRYDMDRYGVVFRASPRQADVLIVAG 115

Query: 101 TLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCP 160
           TLTNKMA A R+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCP
Sbjct: 116 TLTNKMAPAFRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCP 175

Query: 161 PTAEALIYGILLLQKKIRRVGNVK 184
           PTAEAL+YGIL LQKK++R+  ++
Sbjct: 176 PTAEALMYGILQLQKKVKRMRTLQ 199


>gi|225712904|gb|ACO12298.1| NADH dehydrogenase iron-sulfur protein 7, mitochondrial precursor
           [Lepeophtheirus salmonis]
          Length = 211

 Score =  244 bits (624), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 108/154 (70%), Positives = 127/154 (82%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP 90
            +     ++V  +D L+ W R  SL  +TFGLA CAVEMM  + PRYD++R+G   RASP
Sbjct: 53  DKKNKAEYVVARLDDLINWGRKTSLWPLTFGLAYCAVEMMHIAAPRYDMDRYGVVFRASP 112

Query: 91  RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150
           RQ+DV++VAGTLTNKMA A R+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIV
Sbjct: 113 RQADVILVAGTLTNKMAPAFRKVYDQMLEPRWVISMGSCANGGGYYHYSYSVVRGCDRIV 172

Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           PVDIYVPGCPPTAEAL+YGIL LQKKI+R+ NV+
Sbjct: 173 PVDIYVPGCPPTAEALMYGILQLQKKIKRMKNVQ 206


>gi|6007781|gb|AAF01037.1| NADH ubiquinone oxidoreductase PSST subunit [Lupinus luteus]
          Length = 213

 Score =  244 bits (624), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 113/144 (78%), Positives = 123/144 (85%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           F+++ VD L+ WAR GS+  MTFGLACCAVEMM     RYDL+RFG   R SPRQSD MI
Sbjct: 62  FVISKVDDLMNWARRGSIWPMTFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDCMI 121

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP
Sbjct: 122 VAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 181

Query: 158 GCPPTAEALIYGILLLQKKIRRVG 181
           GCPPTAEAL+YG+L LQKKI R  
Sbjct: 182 GCPPTAEALLYGLLQLQKKINRRK 205


>gi|319943349|ref|ZP_08017631.1| NADH-quinone oxidoreductase subunit B [Lautropia mirabilis ATCC
           51599]
 gi|319743164|gb|EFV95569.1| NADH-quinone oxidoreductase subunit B [Lautropia mirabilis ATCC
           51599]
          Length = 159

 Score =  244 bits (623), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 115/151 (76%), Positives = 130/151 (86%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           + ++GF+ T+VD+L+ W RTGSL  MTFGLACCAVEM+ A + RYDL+RFG   R SPR 
Sbjct: 6   VLNEGFVTTNVDKLINWTRTGSLWAMTFGLACCAVEMIHAGVSRYDLDRFGVIFRPSPRH 65

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           SDVMIVAGTL NKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPV
Sbjct: 66  SDVMIVAGTLCNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPV 125

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           DIYVPGCPPTAEALIYGI+ LQ+KIR    +
Sbjct: 126 DIYVPGCPPTAEALIYGIIQLQRKIRETNTI 156


>gi|147818797|emb|CAN67285.1| hypothetical protein VITISV_021597 [Vitis vinifera]
          Length = 209

 Score =  244 bits (623), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 115/179 (64%), Positives = 132/179 (73%), Gaps = 1/179 (0%)

Query: 4   TTVNQKIISGQSSCSLEKVDADFSRISSEITHK-GFLVTSVDQLVTWARTGSLMWMTFGL 62
           TT+        +     +     S   + ++    F+++ VD L+ WAR GS+  MTFGL
Sbjct: 23  TTLPSLSSESAAPAPYSRAPPPSSTSPAGLSKAAEFVISKVDDLLNWARRGSIWPMTFGL 82

Query: 63  ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122
           ACCAVEMM     RYDL+RFG   R SPRQSD MIVAGTLTNKMA ALR+VYDQMPEPR+
Sbjct: 83  ACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDCMIVAGTLTNKMAPALRKVYDQMPEPRW 142

Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
           V+SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG+L LQKKI R  
Sbjct: 143 VVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGLLQLQKKINRRK 201


>gi|134095030|ref|YP_001100105.1| NADH dehydrogenase subunit B [Herminiimonas arsenicoxydans]
 gi|218527991|sp|A4G643|NUOB_HERAR RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|133738933|emb|CAL61980.1| NADH-quinone oxidoreductase subunit B (NADH dehydrogenase I subunit
           B) (NDH-1 subunit B) [Herminiimonas arsenicoxydans]
          Length = 158

 Score =  244 bits (623), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 112/151 (74%), Positives = 128/151 (84%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           + ++GF+ T+ D+L+ W RTGS+  MTFGLACCAVEMM A   RYD++RFG   R SPRQ
Sbjct: 6   VLNEGFVTTTADKLINWTRTGSMWPMTFGLACCAVEMMHAGASRYDMDRFGVVFRPSPRQ 65

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           SDVMIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPV
Sbjct: 66  SDVMIVAGTLCNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPV 125

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           D+YVPGCPPTAEAL+YGI+ LQ KIRR   +
Sbjct: 126 DVYVPGCPPTAEALLYGIMQLQNKIRRTNTI 156


>gi|226348821|gb|ACO50725.1| NADH dehydrogenase subunit 10 [Micromonas pusilla CCMP1545]
          Length = 158

 Score =  244 bits (623), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 110/144 (76%), Positives = 124/144 (86%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
           +   ++++ VD L+ WAR GSL  MTFGLACCAVEMM     RYDL+RFG   R SPRQS
Sbjct: 3   SQAEYILSKVDALLNWARKGSLWPMTFGLACCAVEMMHTGAARYDLDRFGMIFRPSPRQS 62

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD 153
           DVMIVAGTLTNKMA ALR+VYDQMPEP++VISMGSCANGGGYYHYSY+VVRGCDRIVPVD
Sbjct: 63  DVMIVAGTLTNKMAPALRKVYDQMPEPKWVISMGSCANGGGYYHYSYAVVRGCDRIVPVD 122

Query: 154 IYVPGCPPTAEALIYGILLLQKKI 177
           +YVPGCPPTAEAL+YG+L LQKKI
Sbjct: 123 VYVPGCPPTAEALLYGLLQLQKKI 146


>gi|254491467|ref|ZP_05104646.1| NADH-quinone oxidoreductase, B subunit subfamily [Methylophaga
           thiooxidans DMS010]
 gi|224462945|gb|EEF79215.1| NADH-quinone oxidoreductase, B subunit subfamily [Methylophaga
           thiooxydans DMS010]
          Length = 162

 Score =  244 bits (623), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 117/151 (77%), Positives = 128/151 (84%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           +  KG + TS D+L+ WARTGSL  MTFGLACCAVEMM A   RYDL+RFG   R SPRQ
Sbjct: 6   VLEKGVVTTSADKLINWARTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGVVFRPSPRQ 65

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           SDVMIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPV
Sbjct: 66  SDVMIVAGTLVNKMAPALRKVYDQMSEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPV 125

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           DIYVPGCPPTAEAL+YGI+ LQKKI+R   +
Sbjct: 126 DIYVPGCPPTAEALLYGIVQLQKKIQRTNTI 156


>gi|73540665|ref|YP_295185.1| NADH dehydrogenase subunit B [Ralstonia eutropha JMP134]
 gi|123625484|sp|Q473U2|NUOB_RALEJ RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|72118078|gb|AAZ60341.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit [Ralstonia eutropha
           JMP134]
          Length = 160

 Score =  244 bits (623), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 114/151 (75%), Positives = 128/151 (84%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           + ++GF+ T+ D+L+ W RTGSL  MTFGLACCAVEMM A   RYDL+RFG   R SPRQ
Sbjct: 6   VLNEGFVTTTADKLINWTRTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGVVFRPSPRQ 65

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           SDVMIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPV
Sbjct: 66  SDVMIVAGTLCNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPV 125

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           DIYVPGCPPTAEALIYG++ LQ KI+R   +
Sbjct: 126 DIYVPGCPPTAEALIYGVIQLQNKIKRTNTI 156


>gi|297811291|ref|XP_002873529.1| hypothetical protein ARALYDRAFT_488014 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297319366|gb|EFH49788.1| hypothetical protein ARALYDRAFT_488014 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 211

 Score =  244 bits (623), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 114/144 (79%), Positives = 124/144 (86%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           F+++ VD L+ WARTGS+  MTFGLACCAVEMM     RYDL+RFG   R SPRQSD MI
Sbjct: 67  FVISKVDDLMNWARTGSIWPMTFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDCMI 126

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP
Sbjct: 127 VAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 186

Query: 158 GCPPTAEALIYGILLLQKKIRRVG 181
           GCPPTAEAL+YG+L LQKKI R  
Sbjct: 187 GCPPTAEALLYGLLQLQKKINRRK 210


>gi|209964549|ref|YP_002297464.1| NADH-quinone oxidoreductase chain B [Rhodospirillum centenum SW]
 gi|238065202|sp|B6ISY0|NUOB_RHOCS RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|209958015|gb|ACI98651.1| NADH-quinone oxidoreductase chain B [Rhodospirillum centenum SW]
          Length = 194

 Score =  244 bits (623), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 123/191 (64%), Positives = 138/191 (72%), Gaps = 8/191 (4%)

Query: 1   MGLTTVNQKIISGQSSC--------SLEKVDADFSRISSEITHKGFLVTSVDQLVTWART 52
           MG+       + G SS              DA    +  E+  KG+LV   D L+ WART
Sbjct: 1   MGVIATPPPSVQGPSSQVPSSAPIPPGPVQDAYLQAVQQEMQDKGYLVARFDALMDWART 60

Query: 53  GSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRR 112
           GSL  MTFGLACCAVEM+ A M RYDL+RFG  PR SPRQSDVMIVAGT+ NKMA ALR+
Sbjct: 61  GSLWPMTFGLACCAVEMIHAYMARYDLDRFGVIPRPSPRQSDVMIVAGTVCNKMAPALRK 120

Query: 113 VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILL 172
           VYDQM EPR+VISMGSCANGGGYYHYSYSVVRG DRIVPVDIYVPGCPPTAEAL+YG+L 
Sbjct: 121 VYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGVDRIVPVDIYVPGCPPTAEALVYGVLQ 180

Query: 173 LQKKIRRVGNV 183
           LQKKI+    +
Sbjct: 181 LQKKIKNGNRL 191


>gi|196002435|ref|XP_002111085.1| predicted protein [Trichoplax adhaerens]
 gi|190587036|gb|EDV27089.1| predicted protein [Trichoplax adhaerens]
          Length = 164

 Score =  244 bits (623), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 115/146 (78%), Positives = 128/146 (87%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           F+V  VD ++ WAR  SL  MTFGLACCA+EMMQ + PRYD++RFG   RASPRQ+DVMI
Sbjct: 13  FVVAKVDDVINWARRSSLWPMTFGLACCAIEMMQFAAPRYDMDRFGIVFRASPRQADVMI 72

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGTLTNKMA A R+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRI+PVDIYVP
Sbjct: 73  VAGTLTNKMAPAFRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVP 132

Query: 158 GCPPTAEALIYGILLLQKKIRRVGNV 183
           GCPPTAEAL+YG LLLQKKIRR  +V
Sbjct: 133 GCPPTAEALLYGFLLLQKKIRRSKSV 158


>gi|300703643|ref|YP_003745245.1| NADH-quinone oxidoreductase subunit B [Ralstonia solanacearum
           CFBP2957]
 gi|299071306|emb|CBJ42624.1| NADH-quinone oxidoreductase subunit B [Ralstonia solanacearum
           CFBP2957]
          Length = 160

 Score =  244 bits (623), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 114/151 (75%), Positives = 128/151 (84%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           + ++GF+ T+ D+L+ W RTGSL  MTFGLACCAVEMM A   RYDL+RFG   R SPRQ
Sbjct: 6   VLNEGFVTTTADKLINWTRTGSLWPMTFGLACCAVEMMHAGASRYDLDRFGVVFRPSPRQ 65

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           SDVMIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPV
Sbjct: 66  SDVMIVAGTLCNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPV 125

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           D+YVPGCPPTAEALIYG++ LQ KIRR   +
Sbjct: 126 DVYVPGCPPTAEALIYGVIQLQAKIRRTNTI 156


>gi|225429464|ref|XP_002277483.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 209

 Score =  244 bits (623), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 115/179 (64%), Positives = 132/179 (73%), Gaps = 1/179 (0%)

Query: 4   TTVNQKIISGQSSCSLEKVDADFSRISSEITHK-GFLVTSVDQLVTWARTGSLMWMTFGL 62
           TT+        +     +     S   + ++    F+++ VD L+ WAR GS+  MTFGL
Sbjct: 23  TTLPSLSSESAAPAPYSRAPPPSSTSPAGLSKAAEFVISKVDDLLNWARRGSIWPMTFGL 82

Query: 63  ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122
           ACCAVEMM     RYDL+RFG   R SPRQSD MIVAGTLTNKMA ALR+VYDQMPEPR+
Sbjct: 83  ACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDCMIVAGTLTNKMAPALRKVYDQMPEPRW 142

Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
           V+SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG+L LQKKI R  
Sbjct: 143 VVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGLLQLQKKINRRK 201


>gi|242765651|ref|XP_002341018.1| NADH-ubiquinone oxidoreductase subunit B, putative [Talaromyces
           stipitatus ATCC 10500]
 gi|218724214|gb|EED23631.1| NADH-ubiquinone oxidoreductase subunit B, putative [Talaromyces
           stipitatus ATCC 10500]
          Length = 226

 Score =  244 bits (623), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 117/186 (62%), Positives = 136/186 (73%), Gaps = 2/186 (1%)

Query: 1   MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWM 58
           M  + + ++     S  +  KV  +    S E       + +T++DQ+  WAR  SL  M
Sbjct: 36  MPASAIERQSEPSSSLTASGKVRREVPLPSQEKKEGAMQYALTTLDQIANWARQSSLWPM 95

Query: 59  TFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMP 118
           TFGLACCAVEMM  S PRYD +R G   RASPRQSDVMIVAGTLTNKMA ALR+VYDQMP
Sbjct: 96  TFGLACCAVEMMHLSTPRYDQDRLGIIFRASPRQSDVMIVAGTLTNKMAPALRQVYDQMP 155

Query: 119 EPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           +PR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT+EAL+YGI  LQKK+R
Sbjct: 156 DPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTSEALMYGIFQLQKKMR 215

Query: 179 RVGNVK 184
                +
Sbjct: 216 HTKITR 221


>gi|169774064|ref|XP_001821500.1| NADH-ubiquinone oxidoreductase subunit [Aspergillus oryzae RIB40]
 gi|238508860|ref|XP_002385611.1| NADH-ubiquinone oxidoreductase subunit B, putative [Aspergillus
           flavus NRRL3357]
 gi|83769362|dbj|BAE59498.1| unnamed protein product [Aspergillus oryzae]
 gi|220688358|gb|EED44712.1| NADH-ubiquinone oxidoreductase subunit B, putative [Aspergillus
           flavus NRRL3357]
          Length = 228

 Score =  244 bits (623), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 117/183 (63%), Positives = 137/183 (74%), Gaps = 2/183 (1%)

Query: 4   TTVNQKIISGQSSCSLEKVDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFG 61
           T +  K  SGQ   +  K+  +    S E       +++T++DQ+  WAR  SL  MTFG
Sbjct: 41  TALEHKGHSGQPLTASGKIRKEVPLPSQEKKEGAMQYVLTTLDQVANWARQSSLWPMTFG 100

Query: 62  LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPR 121
           LACCAVEMM  S PRYD +R G   RASPRQSDVMIVAGTLTNKMA ALR+VYDQMP+PR
Sbjct: 101 LACCAVEMMHLSTPRYDQDRLGIIFRASPRQSDVMIVAGTLTNKMAPALRQVYDQMPDPR 160

Query: 122 YVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
           +V+SMGSCANGGGYYHYSYSVVRGCDRIVPVD+YVPGCPPT+EAL+YGI  LQKK+R   
Sbjct: 161 WVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTSEALMYGIFQLQKKMRHTR 220

Query: 182 NVK 184
             +
Sbjct: 221 ITR 223


>gi|254247658|ref|ZP_04940979.1| NADH dehydrogenase beta subunit [Burkholderia cenocepacia PC184]
 gi|124872434|gb|EAY64150.1| NADH dehydrogenase beta subunit [Burkholderia cenocepacia PC184]
          Length = 173

 Score =  244 bits (622), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 114/151 (75%), Positives = 127/151 (84%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           +  +GF+ T+ D+L+ W RTGSL  MTFGLACCAVEMM A   RYDL+RFG   R SPRQ
Sbjct: 20  VLKEGFVTTTADKLINWTRTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGVVFRPSPRQ 79

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           SDVMIVAGTL NKMA ALRRVYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPV
Sbjct: 80  SDVMIVAGTLCNKMAPALRRVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPV 139

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           D+YVPGCPPTAEAL+YG++ LQ KIRR   +
Sbjct: 140 DVYVPGCPPTAEALVYGVIQLQAKIRRTNTI 170


>gi|94309873|ref|YP_583083.1| NADH dehydrogenase subunit B [Cupriavidus metallidurans CH34]
 gi|113867071|ref|YP_725560.1| NADH dehydrogenase subunit B [Ralstonia eutropha H16]
 gi|194289160|ref|YP_002005067.1| NADH dehydrogenase subunit b [Cupriavidus taiwanensis LMG 19424]
 gi|122947021|sp|Q0KCS9|NUOB_RALEH RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|218527987|sp|B3R3W8|NUOB_CUPTR RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|218528006|sp|Q1LPW2|NUOB_RALME RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|93353725|gb|ABF07814.1| NADH dehydrogenase chain B [Cupriavidus metallidurans CH34]
 gi|113525847|emb|CAJ92192.1| NADH dehydrogenase chain B [Ralstonia eutropha H16]
 gi|193222995|emb|CAQ69000.1| NADH:ubiquinone oxidoreductase complex I, chain B [Cupriavidus
           taiwanensis LMG 19424]
          Length = 160

 Score =  244 bits (622), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 113/151 (74%), Positives = 128/151 (84%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           + ++GF+ T+ D+L+ W RTGSL  MTFGLACCAVEMM A   RYD++RFG   R SPRQ
Sbjct: 6   VLNEGFVTTTADKLINWTRTGSLWPMTFGLACCAVEMMHAGAARYDMDRFGVIFRPSPRQ 65

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           SDVMIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPV
Sbjct: 66  SDVMIVAGTLCNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPV 125

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           DIYVPGCPPTAEALIYG++ LQ KI+R   +
Sbjct: 126 DIYVPGCPPTAEALIYGVIQLQNKIKRTNTI 156


>gi|195574757|ref|XP_002105350.1| GD21440 [Drosophila simulans]
 gi|194201277|gb|EDX14853.1| GD21440 [Drosophila simulans]
          Length = 212

 Score =  244 bits (622), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 108/144 (75%), Positives = 125/144 (86%)

Query: 41  TSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAG 100
             +D L+ W R GSL  +TFGLACCAVEMM  + PRYD++R+G   RASPRQ+DV+IVAG
Sbjct: 64  ARLDDLLNWGRKGSLWPLTFGLACCAVEMMHIAAPRYDMDRYGVVFRASPRQADVLIVAG 123

Query: 101 TLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCP 160
           TLTNKMA A R+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCP
Sbjct: 124 TLTNKMAPAFRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCP 183

Query: 161 PTAEALIYGILLLQKKIRRVGNVK 184
           PTAEAL+YGIL LQKK++R+  ++
Sbjct: 184 PTAEALMYGILQLQKKVKRMRTLQ 207


>gi|88608136|ref|YP_506317.1| NADH dehydrogenase I, B subunit [Neorickettsia sennetsu str.
           Miyayama]
 gi|123491986|sp|Q2GDX9|NUOB_NEOSM RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|88600305|gb|ABD45773.1| NADH dehydrogenase I, B subunit [Neorickettsia sennetsu str.
           Miyayama]
          Length = 167

 Score =  244 bits (622), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 116/152 (76%), Positives = 129/152 (84%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP 90
           S ++  G+LV  +D L+ WAR+GSL  MTFGLACCAVEMM  +  RYD++RFG   R SP
Sbjct: 12  SNVSSDGYLVAKLDDLINWARSGSLWPMTFGLACCAVEMMHFTASRYDMDRFGMIFRPSP 71

Query: 91  RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150
           RQSDVMIVAGTLTNKMA ALRRVYDQM EP+YVISMGSCANGGGYYHYSYSVVRGCDRIV
Sbjct: 72  RQSDVMIVAGTLTNKMAPALRRVYDQMAEPKYVISMGSCANGGGYYHYSYSVVRGCDRIV 131

Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
           PVD+YVPGCPPTAEAL+YG+L LQKKI R  N
Sbjct: 132 PVDVYVPGCPPTAEALLYGVLCLQKKINRQRN 163


>gi|206560702|ref|YP_002231467.1| NADH dehydrogenase subunit B [Burkholderia cenocepacia J2315]
 gi|198036744|emb|CAR52644.1| NADH dehydrogenase I chain B [Burkholderia cenocepacia J2315]
          Length = 173

 Score =  244 bits (622), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 114/151 (75%), Positives = 127/151 (84%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           +  +GF+ T+ D+L+ W RTGSL  MTFGLACCAVEMM A   RYDL+RFG   R SPRQ
Sbjct: 20  VLKEGFVTTTADKLINWTRTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGVVFRPSPRQ 79

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           SDVMIVAGTL NKMA ALRRVYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPV
Sbjct: 80  SDVMIVAGTLCNKMAPALRRVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPV 139

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           D+YVPGCPPTAEAL+YG++ LQ KIRR   +
Sbjct: 140 DVYVPGCPPTAEALVYGVIQLQAKIRRTNTI 170


>gi|312796901|ref|YP_004029823.1| NADH-quinone oxidoreductase chain B [Burkholderia rhizoxinica HKI
           454]
 gi|312168676|emb|CBW75679.1| NADH-quinone oxidoreductase chain B (EC 1.6.5.3) [Burkholderia
           rhizoxinica HKI 454]
          Length = 173

 Score =  244 bits (622), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 113/151 (74%), Positives = 127/151 (84%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           +  +GF+ T+ D+L+ W RTGSL  MTFGLACCAVEMM A   RYDL+RFG   R SPRQ
Sbjct: 20  VLKEGFVTTTADKLINWTRTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGVVFRPSPRQ 79

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           SDVMIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPV
Sbjct: 80  SDVMIVAGTLCNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPV 139

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           D+YVPGCPPTAEAL+YG++ LQ KIRR   +
Sbjct: 140 DVYVPGCPPTAEALVYGVIQLQAKIRRTNTI 170


>gi|52842986|ref|YP_096785.1| NADH dehydrogenase subunit B [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|54295617|ref|YP_128032.1| NADH dehydrogenase subunit B [Legionella pneumophila str. Lens]
 gi|54298771|ref|YP_125140.1| NADH dehydrogenase subunit B [Legionella pneumophila str. Paris]
 gi|296108431|ref|YP_003620132.1| NADH dehydrogenase I chain B [Legionella pneumophila 2300/99 Alcoy]
 gi|81376641|sp|Q5ZRT9|NUOB_LEGPH RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|81601171|sp|Q5WT21|NUOB_LEGPL RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|81601638|sp|Q5X1A8|NUOB_LEGPA RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|52630097|gb|AAU28838.1| NADH dehydrogenase I, B subunit [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|53752556|emb|CAH13988.1| NADH dehydrogenase I chain B [Legionella pneumophila str. Paris]
 gi|53755449|emb|CAH16945.1| NADH dehydrogenase I chain B [Legionella pneumophila str. Lens]
 gi|295650333|gb|ADG26180.1| NADH dehydrogenase I chain B [Legionella pneumophila 2300/99 Alcoy]
          Length = 158

 Score =  243 bits (621), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 116/149 (77%), Positives = 130/149 (87%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP 90
           +E+  KGF +T+V++LV WAR+GS+  MTFGLACCAVEMM     RYDL+RFG   R SP
Sbjct: 4   AELEKKGFELTTVEKLVGWARSGSMWPMTFGLACCAVEMMHVGAARYDLDRFGIIFRPSP 63

Query: 91  RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150
           RQSDVMIVAGTL NKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRIV
Sbjct: 64  RQSDVMIVAGTLCNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIV 123

Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           PVD+YVPGCPPTAEAL+YGI+ LQ KIRR
Sbjct: 124 PVDVYVPGCPPTAEALLYGIIQLQNKIRR 152


>gi|1171866|sp|P42027|NDUS7_BRAOL RecName: Full=NADH-ubiquinone oxidoreductase 20 kDa subunit,
           mitochondrial; AltName: Full=Complex I-20kD;
           Short=CI-20kD; Flags: Precursor
 gi|562282|emb|CAA57725.1| PSST subunit of NADH: ubiquinone oxidoreductase [Brassica oleracea]
          Length = 215

 Score =  243 bits (621), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 114/170 (67%), Positives = 129/170 (75%)

Query: 12  SGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQ 71
           +  +S +     +  +          F+++ VD L+ WAR GS+  MTFGLACCAVEMM 
Sbjct: 38  TTPTSYTRPGPPSTSAPPPGLSKTAEFVISKVDDLMNWARRGSIWPMTFGLACCAVEMMH 97

Query: 72  ASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCAN 131
               RYDL+RFG   R SPRQSD MIVAGTLTNKMA ALR+VYDQMPEPR+VISMGSCAN
Sbjct: 98  TGAARYDLDRFGIIFRPSPRQSDCMIVAGTLTNKMAPALRKVYDQMPEPRWVISMGSCAN 157

Query: 132 GGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
           GGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG+L LQKKI R  
Sbjct: 158 GGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGLLQLQKKINRRK 207


>gi|9652190|gb|AAF91434.1| NADH-ubiquinone oxidoreductase subunit PSST [Lupinus luteus]
          Length = 192

 Score =  243 bits (621), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 113/144 (78%), Positives = 123/144 (85%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           F+++ VD L+ WAR GS+  MTFGLACCAVEMM     RYDL+RFG   R SPRQSD MI
Sbjct: 41  FVISKVDDLMNWARRGSIWPMTFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDCMI 100

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP
Sbjct: 101 VAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 160

Query: 158 GCPPTAEALIYGILLLQKKIRRVG 181
           GCPPTAEAL+YG+L LQKKI R  
Sbjct: 161 GCPPTAEALLYGLLQLQKKINRRK 184


>gi|312383258|gb|EFR28415.1| hypothetical protein AND_03673 [Anopheles darlingi]
          Length = 210

 Score =  243 bits (621), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 114/187 (60%), Positives = 140/187 (74%), Gaps = 4/187 (2%)

Query: 2   GLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKG----FLVTSVDQLVTWARTGSLMW 57
           G   V   + S  +   +EK   +    S   T +     + V  +D ++ W R GS+  
Sbjct: 19  GTVQVLPSVRSKATLPVVEKDKPEKLPYSPFGTKQSSWADWTVARLDDVLNWGRKGSIWP 78

Query: 58  MTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQM 117
           +TFGLACCAVEMM  + PRYD++RFG   RASPRQ+DV+IVAGTLTNKMA ALR+VYDQM
Sbjct: 79  LTFGLACCAVEMMHIAAPRYDMDRFGVVFRASPRQADVIIVAGTLTNKMAPALRKVYDQM 138

Query: 118 PEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
           PEPR+VISMGSCANGGGYYHYSYSVVRGCDRI+PVDIYVPGCPPTAEAL+YG+L LQKK+
Sbjct: 139 PEPRWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALLYGVLQLQKKV 198

Query: 178 RRVGNVK 184
           +R+  ++
Sbjct: 199 KRMKTLQ 205


>gi|254468178|ref|ZP_05081584.1| NADH-quinone oxidoreductase, b subunit [beta proteobacterium KB13]
 gi|207086988|gb|EDZ64271.1| NADH-quinone oxidoreductase, b subunit [beta proteobacterium KB13]
          Length = 158

 Score =  243 bits (621), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 109/151 (72%), Positives = 128/151 (84%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           +  KGF+ T++D L+ + RT S+  MTFGLACCAVEMM A   RYDL+RFG   R SPRQ
Sbjct: 6   LLEKGFITTNLDTLINYTRTNSMWPMTFGLACCAVEMMHAGASRYDLDRFGMVFRPSPRQ 65

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           SD+MIVAGTL NKMA ALR+VYDQMP+P++VISMGSCANGGGYYHYSYSVVRGCDRIVPV
Sbjct: 66  SDLMIVAGTLVNKMAPALRKVYDQMPDPKWVISMGSCANGGGYYHYSYSVVRGCDRIVPV 125

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           D+YVPGCPPTAEAL++G+L LQKKI+R   +
Sbjct: 126 DVYVPGCPPTAEALMFGLLQLQKKIKRTNTI 156


>gi|168032288|ref|XP_001768651.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162680150|gb|EDQ66589.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 201

 Score =  243 bits (621), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 114/146 (78%), Positives = 126/146 (86%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           F+++ VD L+ WARTGS+  MTFGLACCAVEMM     RYDL+RFG   R SPRQSD MI
Sbjct: 50  FVLSKVDALMNWARTGSIWPMTFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDCMI 109

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGTLTNKMA ALR+VYDQMPEPR+V+SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP
Sbjct: 110 VAGTLTNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 169

Query: 158 GCPPTAEALIYGILLLQKKIRRVGNV 183
           GCPPTAEAL+YG+L LQKKI R  +V
Sbjct: 170 GCPPTAEALLYGLLQLQKKINRRKDV 195


>gi|254251862|ref|ZP_04945180.1| NADH dehydrogenase beta subunit [Burkholderia dolosa AUO158]
 gi|124894471|gb|EAY68351.1| NADH dehydrogenase beta subunit [Burkholderia dolosa AUO158]
          Length = 173

 Score =  243 bits (621), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 114/151 (75%), Positives = 127/151 (84%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           +  +GF+ T+ D+L+ W RTGSL  MTFGLACCAVEMM A   RYDL+RFG   R SPRQ
Sbjct: 20  VLKEGFVTTTADKLINWTRTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGVVFRPSPRQ 79

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           SDVMIVAGTL NKMA ALRRVYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPV
Sbjct: 80  SDVMIVAGTLCNKMAPALRRVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPV 139

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           D+YVPGCPPTAEAL+YG++ LQ KIRR   +
Sbjct: 140 DVYVPGCPPTAEALVYGVIQLQAKIRRTNTI 170


>gi|320586540|gb|EFW99210.1| NADH-ubiquinone oxidoreductase subunit [Grosmannia clavigera
           kw1407]
          Length = 243

 Score =  243 bits (621), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 112/178 (62%), Positives = 135/178 (75%), Gaps = 3/178 (1%)

Query: 10  IISGQSSCSLEKVDADFSRISSEITHKG---FLVTSVDQLVTWARTGSLMWMTFGLACCA 66
           + +  S+  + + +     ++S+   K    + +T++D +  W R GS   MTFGLACCA
Sbjct: 61  VAAPHSATGIARRERKEVPLASQEGTKSLVQYALTTLDIIANWGRQGSFWPMTFGLACCA 120

Query: 67  VEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISM 126
           VEMM  S PRYD +RFG   RASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPR+VISM
Sbjct: 121 VEMMHLSTPRYDQDRFGIIFRASPRQSDVMIVAGTLTNKMAPALRQVYDQMPEPRWVISM 180

Query: 127 GSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           GSCANGGGYYHYSYSVVRGCDRIVPVD+YVPGCPPT+EAL+YGI  LQ+K+R     +
Sbjct: 181 GSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTSEALMYGIFQLQRKMRNTRTSR 238


>gi|224824822|ref|ZP_03697929.1| NADH-quinone oxidoreductase, B subunit [Lutiella nitroferrum 2002]
 gi|224603315|gb|EEG09491.1| NADH-quinone oxidoreductase, B subunit [Lutiella nitroferrum 2002]
          Length = 158

 Score =  243 bits (621), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 113/151 (74%), Positives = 127/151 (84%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           I  KGF+ T+ D+L+ + RTGSL  MTFGLACCAVEMM A   RYDL+RFG   R SPRQ
Sbjct: 6   ILEKGFITTTADKLINYTRTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGVVFRPSPRQ 65

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           SD+MIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPV
Sbjct: 66  SDLMIVAGTLCNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPV 125

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           D+YVPGCPPTAEAL+YGI+ LQ KI+R   +
Sbjct: 126 DVYVPGCPPTAEALLYGIIQLQNKIKRTNTI 156


>gi|145256397|ref|XP_001401369.1| NADH-ubiquinone oxidoreductase subunit [Aspergillus niger CBS
           513.88]
 gi|134058270|emb|CAK38461.1| unnamed protein product [Aspergillus niger]
          Length = 232

 Score =  243 bits (621), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 118/183 (64%), Positives = 139/183 (75%), Gaps = 2/183 (1%)

Query: 4   TTVNQKIISGQSSCSLEKVDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFG 61
           T + Q+  SGQ+  +  KV  +    S E       +++T++DQ+  WAR  SL  MTFG
Sbjct: 45  TAIEQRGQSGQALTASGKVRKEVPLPSQEKKEGAMQYVLTTLDQVANWARQSSLWPMTFG 104

Query: 62  LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPR 121
           LACCAVEMM  S PRYD +R G   RASPRQSDVMIVAGTLTNKMA ALR+VYDQMP+PR
Sbjct: 105 LACCAVEMMHLSTPRYDQDRLGIIFRASPRQSDVMIVAGTLTNKMAPALRQVYDQMPDPR 164

Query: 122 YVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
           +V+SMGSCANGGGYYHYSYSVVRGCDRIVPVD+YVPGCPPT+EAL+YGI  LQKK+R   
Sbjct: 165 WVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTSEALMYGIFQLQKKMRHTR 224

Query: 182 NVK 184
             +
Sbjct: 225 ITR 227


>gi|217970157|ref|YP_002355391.1| NADH dehydrogenase subunit B [Thauera sp. MZ1T]
 gi|217507484|gb|ACK54495.1| NADH-quinone oxidoreductase, B subunit [Thauera sp. MZ1T]
          Length = 158

 Score =  243 bits (620), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 113/149 (75%), Positives = 126/149 (84%)

Query: 35  HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSD 94
            +GF+ TS+D ++ W RTGSL  MTFGLACCAVEM+ A   RYDL+RFG   R SPRQSD
Sbjct: 8   REGFVTTSLDAVINWTRTGSLWPMTFGLACCAVEMIHAGCSRYDLDRFGVVFRPSPRQSD 67

Query: 95  VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154
           +MIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVD+
Sbjct: 68  LMIVAGTLCNKMAPALRKVYDQMSEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDV 127

Query: 155 YVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           YVPGCPPTAEALIYGIL LQ KI+R   +
Sbjct: 128 YVPGCPPTAEALIYGILQLQNKIKRTNTI 156


>gi|148244390|ref|YP_001219084.1| NADH dehydrogenase I chain B [Candidatus Vesicomyosocius okutanii
           HA]
 gi|218528012|sp|A5CXF8|NUOB_VESOH RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|146326217|dbj|BAF61360.1| NADH dehydrogenase I chain B [Candidatus Vesicomyosocius okutanii
           HA]
          Length = 159

 Score =  243 bits (620), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 112/151 (74%), Positives = 131/151 (86%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           +  +GF+  S+D+++ WARTGSL  MTFGLACCAVEMM+A   RYDL+RFG   R +PRQ
Sbjct: 6   LIKQGFVTMSLDRVINWARTGSLWPMTFGLACCAVEMMEAGSSRYDLDRFGIVFRPTPRQ 65

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           SD+MIVAGTLTNKMA ALR+VYDQMPEP++VISMGSCANGGGYYHYSY+V+RGCDRIVPV
Sbjct: 66  SDLMIVAGTLTNKMAPALRKVYDQMPEPKWVISMGSCANGGGYYHYSYAVIRGCDRIVPV 125

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           DIYVPGCPPTAEAL+YGI+ LQ KIRR   +
Sbjct: 126 DIYVPGCPPTAEALLYGIMQLQDKIRRTNTI 156


>gi|323452394|gb|EGB08268.1| NADH dehydrogenase subunit 10 [Aureococcus anophagefferens]
          Length = 162

 Score =  243 bits (620), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 112/146 (76%), Positives = 129/146 (88%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           F+VT VD+LV WAR GS+  MTFGLACCAVEMM ++  RYD+ERFG   RASPRQSDVMI
Sbjct: 11  FMVTKVDELVNWARKGSIWPMTFGLACCAVEMMHSATARYDMERFGMVFRASPRQSDVMI 70

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGTLTNKMA ALR+VYDQMPEPR+V+SMGSCANGGGYYHYSY+VVRG DRIVPVDIYVP
Sbjct: 71  VAGTLTNKMAPALRKVYDQMPEPRWVLSMGSCANGGGYYHYSYAVVRGVDRIVPVDIYVP 130

Query: 158 GCPPTAEALIYGILLLQKKIRRVGNV 183
           GCPPTAEAL+YG++ LQKK++   ++
Sbjct: 131 GCPPTAEALLYGLIQLQKKVKSNRSL 156


>gi|145589233|ref|YP_001155830.1| NADH-quinone oxidoreductase, B subunit [Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1]
 gi|171463527|ref|YP_001797640.1| NADH-quinone oxidoreductase, B subunit [Polynucleobacter
           necessarius subsp. necessarius STIR1]
 gi|218528004|sp|B1XUJ9|NUOB_POLNS RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|218528005|sp|A4SXQ2|NUOB_POLSQ RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|145047639|gb|ABP34266.1| NADH dehydrogenase subunit B [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
 gi|171193065|gb|ACB44026.1| NADH-quinone oxidoreductase, B subunit [Polynucleobacter
           necessarius subsp. necessarius STIR1]
          Length = 160

 Score =  243 bits (620), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 114/151 (75%), Positives = 125/151 (82%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           +  +GF+ T+ DQL+ W R GSL  MTFGLACCAVEMM A   RYDL+RFG   R SPRQ
Sbjct: 6   VLKEGFVTTTADQLINWTRNGSLWPMTFGLACCAVEMMHAGASRYDLDRFGVVFRPSPRQ 65

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           SD+MIVAGTL NKMA ALR+VYDQMPEPR+VISMGSCANGGGYYH SYSVVRGCDRIVPV
Sbjct: 66  SDLMIVAGTLCNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHNSYSVVRGCDRIVPV 125

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           DIYVPGCPPTAEALIYGI+ LQ KI R   +
Sbjct: 126 DIYVPGCPPTAEALIYGIIQLQSKIARTSTI 156


>gi|332526748|ref|ZP_08402850.1| NADH dehydrogenase subunit B [Rubrivivax benzoatilyticus JA2]
 gi|332111151|gb|EGJ11183.1| NADH dehydrogenase subunit B [Rubrivivax benzoatilyticus JA2]
          Length = 158

 Score =  243 bits (620), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 111/151 (73%), Positives = 129/151 (85%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           +  +GF+ TSVD+L+ W++TGSL  MTFGLACCA+EMM A   RYD++RFG   R SPRQ
Sbjct: 6   VIKEGFVTTSVDKLINWSKTGSLWPMTFGLACCAIEMMHAGAARYDMDRFGMLFRPSPRQ 65

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           SD+MIVAGTL NKMA ALR+VYDQM EPR+V+SMGSCANGGGYYHYSYSVVRGCDRIVPV
Sbjct: 66  SDLMIVAGTLCNKMAPALRKVYDQMAEPRWVLSMGSCANGGGYYHYSYSVVRGCDRIVPV 125

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           D+YVPGCPPTAEAL+YGI+ LQ KIRR   +
Sbjct: 126 DVYVPGCPPTAEALLYGIMQLQSKIRRENTI 156


>gi|253996972|ref|YP_003049036.1| NADH dehydrogenase subunit B [Methylotenera mobilis JLW8]
 gi|253983651|gb|ACT48509.1| NADH-quinone oxidoreductase, B subunit [Methylotenera mobilis JLW8]
          Length = 158

 Score =  243 bits (620), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 111/151 (73%), Positives = 127/151 (84%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           +  KGF+ T++D ++ + RTGSL  MTFGLACCAVEMM A   RYDL+RFG   R SPRQ
Sbjct: 6   VLEKGFVTTTLDTVINYTRTGSLWPMTFGLACCAVEMMHAGASRYDLDRFGIVFRPSPRQ 65

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           SDVMIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSY+VVRGCDRIVPV
Sbjct: 66  SDVMIVAGTLVNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYAVVRGCDRIVPV 125

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           D+YVPGCPPTAEAL+YGI+ LQ KI+R   +
Sbjct: 126 DVYVPGCPPTAEALLYGIIQLQNKIKRTNTI 156


>gi|77166022|ref|YP_344547.1| NADH dehydrogenase subunit B [Nitrosococcus oceani ATCC 19707]
 gi|254436391|ref|ZP_05049897.1| NADH-quinone oxidoreductase, B subunit subfamily [Nitrosococcus
           oceani AFC27]
 gi|300113266|ref|YP_003759841.1| NADH-quinone oxidoreductase subunit B [Nitrosococcus watsonii
           C-113]
 gi|123593538|sp|Q3J829|NUOB2_NITOC RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName:
           Full=NADH dehydrogenase I subunit B 2; AltName:
           Full=NDH-1 subunit B 2
 gi|76884336|gb|ABA59017.1| NADH dehydrogenase subunit B [Nitrosococcus oceani ATCC 19707]
 gi|207088081|gb|EDZ65354.1| NADH-quinone oxidoreductase, B subunit subfamily [Nitrosococcus
           oceani AFC27]
 gi|299539203|gb|ADJ27520.1| NADH-quinone oxidoreductase, B subunit [Nitrosococcus watsonii
           C-113]
          Length = 158

 Score =  243 bits (620), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 113/151 (74%), Positives = 127/151 (84%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           +  +G + T+ D+L+ WARTGSL  MTFGLACCAVEMM A   RYD++RFG   R SPRQ
Sbjct: 6   VLERGVVTTTADKLINWARTGSLWPMTFGLACCAVEMMHAGASRYDMDRFGVIFRPSPRQ 65

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           SDVMIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPV
Sbjct: 66  SDVMIVAGTLVNKMAPALRKVYDQMSEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPV 125

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           DIYVPGCPPTAEAL+YGI+ LQ KI+R   +
Sbjct: 126 DIYVPGCPPTAEALLYGIIQLQNKIKRNYTI 156


>gi|195503274|ref|XP_002098583.1| GE23857 [Drosophila yakuba]
 gi|194184684|gb|EDW98295.1| GE23857 [Drosophila yakuba]
          Length = 212

 Score =  243 bits (620), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 108/144 (75%), Positives = 125/144 (86%)

Query: 41  TSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAG 100
             +D L+ W R GSL  +TFGLACCAVEMM  + PRYD++R+G   RASPRQ+DV+IVAG
Sbjct: 64  ARLDDLLNWGRKGSLWPLTFGLACCAVEMMHIAAPRYDMDRYGVVFRASPRQADVLIVAG 123

Query: 101 TLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCP 160
           TLTNKMA A R+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCP
Sbjct: 124 TLTNKMAPAFRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCP 183

Query: 161 PTAEALIYGILLLQKKIRRVGNVK 184
           PTAEAL+YGIL LQKK++R+  ++
Sbjct: 184 PTAEALMYGILQLQKKVKRMRTLQ 207


>gi|195626816|gb|ACG35238.1| NADH-ubiquinone oxidoreductase 20 kDa subunit [Zea mays]
          Length = 200

 Score =  243 bits (620), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 114/144 (79%), Positives = 123/144 (85%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           F+V+ VD L+ WAR GS+  MTFGLACCAVEMM A   RYD +RFG   R SPRQSD MI
Sbjct: 49  FVVSKVDDLMNWARKGSIWPMTFGLACCAVEMMHAGASRYDFDRFGVIFRPSPRQSDCMI 108

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP
Sbjct: 109 VAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 168

Query: 158 GCPPTAEALIYGILLLQKKIRRVG 181
           GCPPTAEAL+YG+L LQKKI R  
Sbjct: 169 GCPPTAEALLYGVLQLQKKINRRK 192


>gi|212721050|ref|NP_001131270.1| hypothetical protein LOC100192583 [Zea mays]
 gi|194691040|gb|ACF79604.1| unknown [Zea mays]
 gi|195641534|gb|ACG40235.1| NADH-ubiquinone oxidoreductase 20 kDa subunit [Zea mays]
          Length = 202

 Score =  243 bits (620), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 114/144 (79%), Positives = 123/144 (85%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           F+V+ VD L+ WAR GS+  MTFGLACCAVEMM A   RYD +RFG   R SPRQSD MI
Sbjct: 51  FVVSKVDDLMNWARKGSIWPMTFGLACCAVEMMHAGASRYDFDRFGVIFRPSPRQSDCMI 110

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP
Sbjct: 111 VAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 170

Query: 158 GCPPTAEALIYGILLLQKKIRRVG 181
           GCPPTAEAL+YG+L LQKKI R  
Sbjct: 171 GCPPTAEALLYGVLQLQKKINRRK 194


>gi|297538955|ref|YP_003674724.1| NADH-quinone oxidoreductase subunit B [Methylotenera sp. 301]
 gi|297258302|gb|ADI30147.1| NADH-quinone oxidoreductase, B subunit [Methylotenera sp. 301]
          Length = 158

 Score =  243 bits (620), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 111/151 (73%), Positives = 127/151 (84%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           I  KGF+ T++D ++ + RTGS+  MTFGLACCAVEMM A   RYDL+RFG   R SPRQ
Sbjct: 6   ILEKGFVTTTLDTVINYTRTGSMWPMTFGLACCAVEMMHAGASRYDLDRFGIVFRGSPRQ 65

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           SDVMIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSY+VVRGCDRIVPV
Sbjct: 66  SDVMIVAGTLVNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYAVVRGCDRIVPV 125

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           D+YVPGCPPTAEAL+YGI+ LQ KI+R   +
Sbjct: 126 DVYVPGCPPTAEALLYGIIQLQNKIKRTNTI 156


>gi|118602276|ref|YP_903491.1| NADH-quinone oxidoreductase, B subunit [Candidatus Ruthia magnifica
           str. Cm (Calyptogena magnifica)]
 gi|218528022|sp|A1AVR3|NUOB_RUTMC RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|118567215|gb|ABL02020.1| NADH dehydrogenase subunit B [Candidatus Ruthia magnifica str. Cm
           (Calyptogena magnifica)]
          Length = 159

 Score =  243 bits (620), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 113/151 (74%), Positives = 130/151 (86%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           +  +GF+ TS++ ++ WARTGSL  MTFGLACCAVEMM+A   RYDL+RFG   R +PRQ
Sbjct: 6   LMKQGFVTTSLNNVINWARTGSLWPMTFGLACCAVEMMEAGSSRYDLDRFGIVFRPTPRQ 65

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           SD+MIVAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSY+VVRGCDRIVPV
Sbjct: 66  SDLMIVAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYAVVRGCDRIVPV 125

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           DIYVPGCPPTAEAL+YGI+ LQ KIR    +
Sbjct: 126 DIYVPGCPPTAEALLYGIIQLQDKIRSTNTI 156


>gi|226939457|ref|YP_002794530.1| NuoB2 [Laribacter hongkongensis HLHK9]
 gi|254767794|sp|C1DCA4|NUOB_LARHH RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|226714383|gb|ACO73521.1| NuoB2 [Laribacter hongkongensis HLHK9]
          Length = 158

 Score =  242 bits (619), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 112/151 (74%), Positives = 127/151 (84%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           +  KGF+ TS D+++ W RTGSL  MTFGLACCAVEMM A   RYDL+RFG   R SPRQ
Sbjct: 6   VLEKGFITTSADKVLNWTRTGSLWPMTFGLACCAVEMMHAGASRYDLDRFGIVFRPSPRQ 65

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           SD+MIVAGTL NKMA ALR+VYDQM EPR+V+SMGSCANGGGYYHYSYSVVRGCDRIVPV
Sbjct: 66  SDLMIVAGTLCNKMAPALRKVYDQMAEPRWVLSMGSCANGGGYYHYSYSVVRGCDRIVPV 125

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           D+YVPGCPPTAEAL+YGI+ LQ KI+R   +
Sbjct: 126 DVYVPGCPPTAEALLYGIIQLQNKIKRTCTI 156


>gi|34496397|ref|NP_900612.1| NADH dehydrogenase subunit B [Chromobacterium violaceum ATCC 12472]
 gi|81656636|sp|Q7NZI0|NUOB1_CHRVO RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName:
           Full=NADH dehydrogenase I subunit B 1; AltName:
           Full=NDH-1 subunit B 1
 gi|34102250|gb|AAQ58616.1| NADH-ubiquinone oxidoreductase, chain B [Chromobacterium violaceum
           ATCC 12472]
          Length = 158

 Score =  242 bits (619), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 113/151 (74%), Positives = 127/151 (84%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           I  KGF+ T+ D+L+ + RTGSL  MTFGLACCAVEMM A   RYDL+RFG   R SPRQ
Sbjct: 6   ILEKGFVTTTADKLINYTRTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGVVFRPSPRQ 65

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           SD+MIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPV
Sbjct: 66  SDLMIVAGTLCNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPV 125

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           D+YVPGCPPTAEAL+YGI+ LQ KI+R   +
Sbjct: 126 DVYVPGCPPTAEALLYGIIQLQNKIKRTNTI 156


>gi|124266597|ref|YP_001020601.1| NADH dehydrogenase subunit B [Methylibium petroleiphilum PM1]
 gi|218527995|sp|A2SFM7|NUOB_METPP RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|124259372|gb|ABM94366.1| NADH dehydrogenase [Methylibium petroleiphilum PM1]
          Length = 158

 Score =  242 bits (619), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 113/151 (74%), Positives = 128/151 (84%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           +  +GF+ TS D+L+ W++TGSL  MTFGLACCAVEMM A   RYD++RFG   R SPRQ
Sbjct: 6   VLKEGFITTSADKLINWSKTGSLWPMTFGLACCAVEMMHAGAARYDIDRFGMLFRPSPRQ 65

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           SD+MIVAGTL NKMA ALRRVYDQM EPR+V+SMGSCANGGGYYHYSYSVVRGCDRIVPV
Sbjct: 66  SDLMIVAGTLCNKMAPALRRVYDQMAEPRWVLSMGSCANGGGYYHYSYSVVRGCDRIVPV 125

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           D+YVPGCPPTAEAL+YGIL LQ KIRR   +
Sbjct: 126 DVYVPGCPPTAEALLYGILQLQAKIRRENTI 156


>gi|307109384|gb|EFN57622.1| hypothetical protein CHLNCDRAFT_21383 [Chlorella variabilis]
          Length = 160

 Score =  242 bits (619), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 112/147 (76%), Positives = 123/147 (83%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           F+V+ VDQLV WAR  S+  MTFGLACCAVEMM     RYD +RFG   R SPRQSD MI
Sbjct: 9   FVVSKVDQLVNWARRSSIWPMTFGLACCAVEMMHTGAARYDFDRFGIIFRPSPRQSDCMI 68

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGTLTNKMA ALR+VYDQMPEPR+V+SMGSCANGGGYYHYSY+VVRGCDRIVPVDIYVP
Sbjct: 69  VAGTLTNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYAVVRGCDRIVPVDIYVP 128

Query: 158 GCPPTAEALIYGILLLQKKIRRVGNVK 184
           GCPPTAEAL+YG+L LQKKI R    +
Sbjct: 129 GCPPTAEALLYGMLQLQKKIGRTKKTQ 155


>gi|194906298|ref|XP_001981347.1| GG11669 [Drosophila erecta]
 gi|190655985|gb|EDV53217.1| GG11669 [Drosophila erecta]
          Length = 212

 Score =  242 bits (619), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 109/144 (75%), Positives = 125/144 (86%)

Query: 41  TSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAG 100
             +D L+ W R GSL  MTFGLACCAVEMM  + PRYD++R+G   RASPRQ+DV+IVAG
Sbjct: 64  ARLDDLLNWGRKGSLWPMTFGLACCAVEMMHIAAPRYDMDRYGVVFRASPRQADVIIVAG 123

Query: 101 TLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCP 160
           TLTNKMA A R+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCP
Sbjct: 124 TLTNKMAPAFRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCP 183

Query: 161 PTAEALIYGILLLQKKIRRVGNVK 184
           PTAEAL+YGIL LQKK++R+  ++
Sbjct: 184 PTAEALMYGILQLQKKVKRMRTLQ 207


>gi|253998384|ref|YP_003050447.1| NADH dehydrogenase subunit B [Methylovorus sp. SIP3-4]
 gi|313200460|ref|YP_004039118.1| NADH-quinone oxidoreductase subunit B [Methylovorus sp. MP688]
 gi|253985063|gb|ACT49920.1| NADH-quinone oxidoreductase, B subunit [Methylovorus sp. SIP3-4]
 gi|312439776|gb|ADQ83882.1| NADH-quinone oxidoreductase, B subunit [Methylovorus sp. MP688]
          Length = 158

 Score =  242 bits (619), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 111/151 (73%), Positives = 127/151 (84%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           +  KGF+ T++D ++ + RTGSL  MTFGLACCAVEMM A   RYDL+RFG   R SPRQ
Sbjct: 6   VLEKGFVTTTLDTVINYTRTGSLWPMTFGLACCAVEMMHAGASRYDLDRFGIVFRPSPRQ 65

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           SDVMIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSY+VVRGCDRIVPV
Sbjct: 66  SDVMIVAGTLVNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYAVVRGCDRIVPV 125

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           D+YVPGCPPTAEAL+YGI+ LQ KI+R   +
Sbjct: 126 DVYVPGCPPTAEALLYGIIQLQNKIKRTNTI 156


>gi|156048917|ref|XP_001590425.1| NADH-ubiquinone oxidoreductase [Sclerotinia sclerotiorum 1980]
 gi|154692564|gb|EDN92302.1| NADH-ubiquinone oxidoreductase [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 235

 Score =  242 bits (619), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 113/159 (71%), Positives = 129/159 (81%), Gaps = 3/159 (1%)

Query: 29  ISSEITHKGFL---VTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA 85
           + S+   KG +   +T++DQ+  WAR GSL  MTFGLACCAVEMM  S PRYD +R G  
Sbjct: 72  LPSQEGKKGVMQYALTTLDQIANWARQGSLWPMTFGLACCAVEMMHLSTPRYDQDRLGII 131

Query: 86  PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRG 145
            RASPRQSDVMIVAGTLTNKMA ALR+VYDQMP+PR+V+SMGSCANGGGYYHYSYSV RG
Sbjct: 132 FRASPRQSDVMIVAGTLTNKMAPALRQVYDQMPDPRWVVSMGSCANGGGYYHYSYSVTRG 191

Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           CDRIVPVDIYVPGCPPT+EAL+YGI  LQKK+R     +
Sbjct: 192 CDRIVPVDIYVPGCPPTSEALMYGIFQLQKKMRHTKITR 230


>gi|168050412|ref|XP_001777653.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162670996|gb|EDQ57555.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 174

 Score =  242 bits (619), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 114/146 (78%), Positives = 126/146 (86%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           F+++ VD L+ WARTGS+  MTFGLACCAVEMM     RYDL+RFG   R SPRQSD MI
Sbjct: 23  FVLSKVDALMNWARTGSIWPMTFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDCMI 82

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGTLTNKMA ALR+VYDQMPEPR+V+SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP
Sbjct: 83  VAGTLTNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 142

Query: 158 GCPPTAEALIYGILLLQKKIRRVGNV 183
           GCPPTAEAL+YG+L LQKKI R  +V
Sbjct: 143 GCPPTAEALLYGLLQLQKKINRRKDV 168


>gi|296828066|ref|XP_002851269.1| NADH dehydrogenase iron-sulfur protein 7 [Arthroderma otae CBS
           113480]
 gi|238838823|gb|EEQ28485.1| NADH dehydrogenase iron-sulfur protein 7 [Arthroderma otae CBS
           113480]
          Length = 227

 Score =  242 bits (619), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 116/183 (63%), Positives = 134/183 (73%), Gaps = 3/183 (1%)

Query: 5   TVNQKIISGQSSCSLEKVDADFSRISSEITHKGFL---VTSVDQLVTWARTGSLMWMTFG 61
           T     +   +S    +       + S+   +G L   +T++DQ+  WAR GSL  MTFG
Sbjct: 40  TEQSGALQSTASSVPARKPRREVPLPSQEKPQGVLDYALTTLDQVANWARQGSLWPMTFG 99

Query: 62  LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPR 121
           LACCAVEMM  S PRYD +R G   RASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPR
Sbjct: 100 LACCAVEMMHLSTPRYDQDRLGIIFRASPRQSDVMIVAGTLTNKMAPALRQVYDQMPEPR 159

Query: 122 YVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
           +VISMGSCANGGGYYHYSYSV RGCDRIVPVDIYVPGCPPT+EAL+YGI  LQ+K+R   
Sbjct: 160 WVISMGSCANGGGYYHYSYSVTRGCDRIVPVDIYVPGCPPTSEALMYGIFQLQRKMRNTK 219

Query: 182 NVK 184
             +
Sbjct: 220 ITR 222


>gi|171058186|ref|YP_001790535.1| NADH dehydrogenase subunit B [Leptothrix cholodnii SP-6]
 gi|218527994|sp|B1Y828|NUOB_LEPCP RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|170775631|gb|ACB33770.1| NADH-quinone oxidoreductase, B subunit [Leptothrix cholodnii SP-6]
          Length = 158

 Score =  242 bits (618), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 112/151 (74%), Positives = 128/151 (84%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           +  +GF+ TSVD L+ W++TGSL  MTFGLACCAVEMM A   RYD++RFG   R SPRQ
Sbjct: 6   VLKEGFVTTSVDTLINWSKTGSLWPMTFGLACCAVEMMHAGASRYDIDRFGMLFRPSPRQ 65

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           SD+MIVAGTL NKMA ALR+VYDQM EPR+V+SMGSCANGGGYYHYSYSVVRGCDR+VPV
Sbjct: 66  SDLMIVAGTLCNKMAPALRKVYDQMAEPRWVLSMGSCANGGGYYHYSYSVVRGCDRVVPV 125

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           D+YVPGCPPTAEAL+YGIL LQ KIRR   +
Sbjct: 126 DVYVPGCPPTAEALLYGILQLQAKIRRENTI 156


>gi|327301805|ref|XP_003235595.1| NADH:ubiquinone oxidoreductase 19.3kD subunit [Trichophyton rubrum
           CBS 118892]
 gi|326462947|gb|EGD88400.1| NADH:ubiquinone oxidoreductase 19.3kD subunit [Trichophyton rubrum
           CBS 118892]
          Length = 227

 Score =  242 bits (618), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 118/184 (64%), Positives = 136/184 (73%), Gaps = 4/184 (2%)

Query: 4   TTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFL---VTSVDQLVTWARTGSLMWMTF 60
           T  +  + S   S    K   +   + S+   +G L   +T++DQ+  WAR GSL  MTF
Sbjct: 40  TEQSSALQSTAGSVPARKPRREVP-LPSQEKPQGVLDYALTTLDQVANWARQGSLWPMTF 98

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           GLACCAVEMM  S PRYD +R G   RASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEP
Sbjct: 99  GLACCAVEMMHLSTPRYDQDRLGIIFRASPRQSDVMIVAGTLTNKMAPALRQVYDQMPEP 158

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           R+VISMGSCANGGGYYHYSYSV RGCDRIVPVDIYVPGCPPT+EAL+YGI  LQ+K+R  
Sbjct: 159 RWVISMGSCANGGGYYHYSYSVTRGCDRIVPVDIYVPGCPPTSEALMYGIFQLQRKMRNT 218

Query: 181 GNVK 184
              +
Sbjct: 219 KITR 222


>gi|331212725|ref|XP_003307632.1| NADH-ubiquinone oxidoreductase subunit [Puccinia graminis f. sp.
           tritici CRL 75-36-700-3]
 gi|309298035|gb|EFP74626.1| NADH-ubiquinone oxidoreductase subunit [Puccinia graminis f. sp.
           tritici CRL 75-36-700-3]
          Length = 261

 Score =  242 bits (618), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 111/154 (72%), Positives = 131/154 (85%)

Query: 29  ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88
           +++      ++++++D++V WAR GS+  MTFGLACCAVEMM  +  RYD +RFG   RA
Sbjct: 101 LATPRNGAEYVISTIDKIVNWARQGSIWPMTFGLACCAVEMMHMAAARYDQDRFGIIFRA 160

Query: 89  SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 148
           SPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDR
Sbjct: 161 SPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDR 220

Query: 149 IVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
           IVPVDIYVPGCPPTAEAL+YG+L LQ+K+RR   
Sbjct: 221 IVPVDIYVPGCPPTAEALMYGLLQLQRKMRRTRK 254


>gi|114321118|ref|YP_742801.1| NADH-quinone oxidoreductase, B subunit [Alkalilimnicola ehrlichii
           MLHE-1]
 gi|122311303|sp|Q0A776|NUOB_ALHEH RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|114227512|gb|ABI57311.1| NADH dehydrogenase subunit B [Alkalilimnicola ehrlichii MLHE-1]
          Length = 158

 Score =  242 bits (618), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 116/151 (76%), Positives = 130/151 (86%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           +  KGF+ TS D+++ WARTGS+  MTFGLACCAVEMMQA   RYDL+RFG   R SPRQ
Sbjct: 6   LLEKGFVTTSADKVINWARTGSMWPMTFGLACCAVEMMQAGAARYDLDRFGIIFRPSPRQ 65

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           SDVMIVAGTL NKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDR+VPV
Sbjct: 66  SDVMIVAGTLCNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRVVPV 125

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           D+YVPGCPPTAEALI+GI+ LQKKIR    +
Sbjct: 126 DVYVPGCPPTAEALIWGIMQLQKKIRTTNTI 156


>gi|319794667|ref|YP_004156307.1| NADH-quinone oxidoreductase, b subunit [Variovorax paradoxus EPS]
 gi|315597130|gb|ADU38196.1| NADH-quinone oxidoreductase, B subunit [Variovorax paradoxus EPS]
          Length = 159

 Score =  242 bits (618), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 111/151 (73%), Positives = 129/151 (85%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           +  +GF+ T+ D +V WA+TGSL  MTFGLACCAVEMM A   RYD++RFG   R SPRQ
Sbjct: 6   VLKEGFVTTTYDSVVNWAKTGSLWPMTFGLACCAVEMMHAGAARYDIDRFGMLFRPSPRQ 65

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           SD+MIVAGTL NKMA ALR+VYDQMPEPR+V+SMGSCANGGGYYHYSYSVVRGCDRIVPV
Sbjct: 66  SDLMIVAGTLCNKMAPALRKVYDQMPEPRWVLSMGSCANGGGYYHYSYSVVRGCDRIVPV 125

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           D+YVPGCPPTAEAL+YG++ LQ+KIRR   +
Sbjct: 126 DVYVPGCPPTAEALLYGVIQLQQKIRRTNTI 156


>gi|242058541|ref|XP_002458416.1| hypothetical protein SORBIDRAFT_03g033090 [Sorghum bicolor]
 gi|241930391|gb|EES03536.1| hypothetical protein SORBIDRAFT_03g033090 [Sorghum bicolor]
          Length = 200

 Score =  242 bits (618), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 114/144 (79%), Positives = 123/144 (85%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           F+V+ VD L+ WAR GS+  MTFGLACCAVEMM A   RYD +RFG   R SPRQSD MI
Sbjct: 49  FVVSKVDDLMNWARKGSIWPMTFGLACCAVEMMHAGASRYDFDRFGVIFRPSPRQSDCMI 108

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP
Sbjct: 109 VAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 168

Query: 158 GCPPTAEALIYGILLLQKKIRRVG 181
           GCPPTAEAL+YG+L LQKKI R  
Sbjct: 169 GCPPTAEALLYGVLQLQKKINRRK 192


>gi|189351038|ref|YP_001946666.1| NADH dehydrogenase subunit B [Burkholderia multivorans ATCC 17616]
 gi|189335060|dbj|BAG44130.1| NADH dehydrogenase I chain B [Burkholderia multivorans ATCC 17616]
          Length = 173

 Score =  242 bits (618), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 114/151 (75%), Positives = 127/151 (84%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           +  +GF+ T+ D+L+ W RTGSL  MTFGLACCAVEMM A   RYDL+RFG   R SPRQ
Sbjct: 20  VLKEGFVTTTADKLINWTRTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGVVFRPSPRQ 79

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           SDVMIVAGTL NKMA ALRRVYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPV
Sbjct: 80  SDVMIVAGTLCNKMAPALRRVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPV 139

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           D+YVPGCPPTAEAL+YG++ LQ KIRR   +
Sbjct: 140 DVYVPGCPPTAEALVYGVIQLQAKIRRTNTI 170


>gi|325983288|ref|YP_004295690.1| NADH-quinone oxidoreductase, B subunit [Nitrosomonas sp. AL212]
 gi|325532807|gb|ADZ27528.1| NADH-quinone oxidoreductase, B subunit [Nitrosomonas sp. AL212]
          Length = 158

 Score =  242 bits (618), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 113/151 (74%), Positives = 125/151 (82%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
              KGF+ TS+D ++ W RTGS+  MTFGLACCAVEMM+    RYDL+RFG   R SPRQ
Sbjct: 6   TLEKGFITTSLDSIINWGRTGSMWPMTFGLACCAVEMMETGASRYDLDRFGIVFRPSPRQ 65

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           SDVMIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPV
Sbjct: 66  SDVMIVAGTLCNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPV 125

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           DIYVPGCPPTAEAL+YGI+ LQ KI R   +
Sbjct: 126 DIYVPGCPPTAEALLYGIIQLQNKINRTNTI 156


>gi|91782613|ref|YP_557819.1| NADH dehydrogenase subunit B [Burkholderia xenovorans LB400]
 gi|170696398|ref|ZP_02887527.1| NADH-quinone oxidoreductase, B subunit [Burkholderia graminis
           C4D1M]
 gi|186476763|ref|YP_001858233.1| NADH dehydrogenase subunit B [Burkholderia phymatum STM815]
 gi|187923341|ref|YP_001894983.1| NADH dehydrogenase subunit B [Burkholderia phytofirmans PsJN]
 gi|209518514|ref|ZP_03267335.1| NADH-quinone oxidoreductase, B subunit [Burkholderia sp. H160]
 gi|295676038|ref|YP_003604562.1| NADH-quinone oxidoreductase, B subunit [Burkholderia sp. CCGE1002]
 gi|296160630|ref|ZP_06843445.1| NADH-quinone oxidoreductase, B subunit [Burkholderia sp. Ch1-1]
 gi|307730339|ref|YP_003907563.1| NADH-quinone oxidoreductase subunit B [Burkholderia sp. CCGE1003]
 gi|323525437|ref|YP_004227590.1| NADH-quinone oxidoreductase subunit B [Burkholderia sp. CCGE1001]
 gi|123358972|sp|Q142H2|NUOB_BURXL RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|218528024|sp|B2JDM7|NUOB_BURP8 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|218528025|sp|B2T2E8|NUOB_BURPP RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|91686567|gb|ABE29767.1| NADH dehydrogenase subunit B [Burkholderia xenovorans LB400]
 gi|170138726|gb|EDT06925.1| NADH-quinone oxidoreductase, B subunit [Burkholderia graminis
           C4D1M]
 gi|184193222|gb|ACC71187.1| NADH-quinone oxidoreductase, B subunit [Burkholderia phymatum
           STM815]
 gi|187714535|gb|ACD15759.1| NADH-quinone oxidoreductase, B subunit [Burkholderia phytofirmans
           PsJN]
 gi|209501059|gb|EEA01094.1| NADH-quinone oxidoreductase, B subunit [Burkholderia sp. H160]
 gi|295435881|gb|ADG15051.1| NADH-quinone oxidoreductase, B subunit [Burkholderia sp. CCGE1002]
 gi|295889156|gb|EFG68959.1| NADH-quinone oxidoreductase, B subunit [Burkholderia sp. Ch1-1]
 gi|307584874|gb|ADN58272.1| NADH-quinone oxidoreductase, B subunit [Burkholderia sp. CCGE1003]
 gi|323382439|gb|ADX54530.1| NADH-quinone oxidoreductase, B subunit [Burkholderia sp. CCGE1001]
          Length = 159

 Score =  242 bits (618), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 113/151 (74%), Positives = 127/151 (84%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           +  +GF+ T+ D+L+ W RTGSL  MTFGLACCAVEMM A   RYDL+RFG   R SPRQ
Sbjct: 6   VLKEGFVTTTADKLINWTRTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGVVFRPSPRQ 65

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           SDVMIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPV
Sbjct: 66  SDVMIVAGTLCNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPV 125

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           D+YVPGCPPTAEAL+YG++ LQ KIRR   +
Sbjct: 126 DVYVPGCPPTAEALVYGVIQLQAKIRRTNTI 156


>gi|46137521|ref|XP_390452.1| hypothetical protein FG10276.1 [Gibberella zeae PH-1]
          Length = 222

 Score =  242 bits (618), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 115/185 (62%), Positives = 139/185 (75%), Gaps = 4/185 (2%)

Query: 3   LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKG---FLVTSVDQLVTWARTGSLMWMT 59
            +  +   +  QS+  +  V  +   + SEI  KG   + +T++D +  WAR  SL  MT
Sbjct: 34  NSRRDASALQTQSATGVGNVRREVP-LPSEIPPKGALQYALTTLDAVTNWARQSSLWPMT 92

Query: 60  FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119
           FGLACCAVEMM  S PRYD +R G   RASPRQSDVMIVAGTLTNKMA ALR+VYDQMPE
Sbjct: 93  FGLACCAVEMMHLSTPRYDQDRLGIIFRASPRQSDVMIVAGTLTNKMAPALRQVYDQMPE 152

Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           PR+VISMGSCANGGGYYHYSY+VVRGCDR+VPVD+YVPGCPPT+EAL+YGI  LQ+K+R+
Sbjct: 153 PRWVISMGSCANGGGYYHYSYAVVRGCDRVVPVDVYVPGCPPTSEALMYGIFQLQRKMRQ 212

Query: 180 VGNVK 184
               +
Sbjct: 213 TRITR 217


>gi|119897688|ref|YP_932901.1| NADH dehydrogenase subunit B [Azoarcus sp. BH72]
 gi|218527941|sp|A1K5A9|NUOB1_AZOSB RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName:
           Full=NADH dehydrogenase I subunit B 1; AltName:
           Full=NDH-1 subunit B 1
 gi|119670101|emb|CAL94014.1| putative NADH-ubiquinone oxidoreductase chain B [Azoarcus sp. BH72]
          Length = 158

 Score =  242 bits (618), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 111/149 (74%), Positives = 126/149 (84%)

Query: 35  HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSD 94
            +GF+ TS+D ++ W RTGSL  MTFGLACCAVEM+ A   RYDL+RFG   R SPRQSD
Sbjct: 8   REGFVTTSLDAVINWTRTGSLWPMTFGLACCAVEMIHAGCSRYDLDRFGVVFRPSPRQSD 67

Query: 95  VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154
           +MIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVD+
Sbjct: 68  LMIVAGTLCNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDV 127

Query: 155 YVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           YVPGCPPTAEAL+YGI+ LQ KI+R   +
Sbjct: 128 YVPGCPPTAEALLYGIIQLQNKIKRTNTI 156


>gi|82702221|ref|YP_411787.1| NADH dehydrogenase subunit B [Nitrosospira multiformis ATCC 25196]
 gi|123544732|sp|Q2YA26|NUOB2_NITMU RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName:
           Full=NADH dehydrogenase I subunit B 2; AltName:
           Full=NDH-1 subunit B 2
 gi|82410286|gb|ABB74395.1| NADH dehydrogenase subunit B [Nitrosospira multiformis ATCC 25196]
          Length = 158

 Score =  242 bits (618), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 115/151 (76%), Positives = 127/151 (84%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           +  KGF+ TS+D ++ W RTGS+  MTFGLACCAVEMMQA   RYDL+RFG   R SPRQ
Sbjct: 6   VMEKGFVTTSLDSVINWGRTGSMWPMTFGLACCAVEMMQAGASRYDLDRFGIVFRPSPRQ 65

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           SDVMIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPV
Sbjct: 66  SDVMIVAGTLCNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPV 125

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           DIYVPGCPPTAEAL+YGI+ LQ KI R   +
Sbjct: 126 DIYVPGCPPTAEALLYGIIQLQNKIHRTNTI 156


>gi|116201555|ref|XP_001226589.1| hypothetical protein CHGG_08662 [Chaetomium globosum CBS 148.51]
 gi|88177180|gb|EAQ84648.1| hypothetical protein CHGG_08662 [Chaetomium globosum CBS 148.51]
          Length = 223

 Score =  242 bits (618), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 115/177 (64%), Positives = 134/177 (75%), Gaps = 3/177 (1%)

Query: 11  ISGQSSCSLEKVDADFSRISSEITHKG---FLVTSVDQLVTWARTGSLMWMTFGLACCAV 67
           +   +   L K D     + S+   KG   + +T++D +  WAR GSL  MTFGLACCAV
Sbjct: 42  VQPHAGYGLAKPDRKEVPLPSQEPTKGLVQYALTTLDIMTNWARQGSLWPMTFGLACCAV 101

Query: 68  EMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMG 127
           EMM  S PRYD +R G   RASPRQSDVMIVAGTLTNKMA ALR+VYDQMP+PR+VISMG
Sbjct: 102 EMMHLSAPRYDQDRLGIIFRASPRQSDVMIVAGTLTNKMAPALRQVYDQMPDPRWVISMG 161

Query: 128 SCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           SCANGGGYYHYSYSVVRGCDRIVPVD+YVPGCPPT+EAL+YGI  LQ+K+R     +
Sbjct: 162 SCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTSEALMYGIFQLQRKMRNTKITR 218


>gi|119497569|ref|XP_001265543.1| NADH-ubiquinone oxidoreductase subunit B, putative [Neosartorya
           fischeri NRRL 181]
 gi|119413705|gb|EAW23646.1| NADH-ubiquinone oxidoreductase subunit B, putative [Neosartorya
           fischeri NRRL 181]
          Length = 226

 Score =  242 bits (617), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 105/164 (64%), Positives = 128/164 (78%), Gaps = 1/164 (0%)

Query: 22  VDADFSRISSEITHK-GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLE 80
           +   F++   E   K   ++T+ D L+ WAR GS   + FGLACC VEMM ASMPRYD +
Sbjct: 58  LPTSFNQSKEENAGKLHHILTTTDSLINWARQGSFWPLAFGLACCGVEMMAASMPRYDQD 117

Query: 81  RFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSY 140
           R G   RASPRQ+DVMIV+GT+TNKMA ALR++YDQMP+P++VISMGSCANGGGYYH+SY
Sbjct: 118 RQGIIFRASPRQADVMIVSGTVTNKMAPALRQLYDQMPDPKWVISMGSCANGGGYYHHSY 177

Query: 141 SVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           SVVRG DR+VPVDIYVPGCPPT EAL+YGIL L++KI R    +
Sbjct: 178 SVVRGVDRLVPVDIYVPGCPPTPEALLYGILQLKRKIERTKVTR 221


>gi|78067045|ref|YP_369814.1| NADH dehydrogenase subunit B [Burkholderia sp. 383]
 gi|107023187|ref|YP_621514.1| NADH dehydrogenase subunit B [Burkholderia cenocepacia AU 1054]
 gi|115352337|ref|YP_774176.1| NADH dehydrogenase subunit B [Burkholderia ambifaria AMMD]
 gi|116690269|ref|YP_835892.1| NADH dehydrogenase subunit B [Burkholderia cenocepacia HI2424]
 gi|134296432|ref|YP_001120167.1| NADH dehydrogenase subunit B [Burkholderia vietnamiensis G4]
 gi|161524205|ref|YP_001579217.1| NADH dehydrogenase subunit B [Burkholderia multivorans ATCC 17616]
 gi|167585972|ref|ZP_02378360.1| NADH-quinone oxidoreductase, B subunit [Burkholderia ubonensis Bu]
 gi|170698110|ref|ZP_02889190.1| NADH-quinone oxidoreductase, B subunit [Burkholderia ambifaria
           IOP40-10]
 gi|170733608|ref|YP_001765555.1| NADH dehydrogenase subunit B [Burkholderia cenocepacia MC0-3]
 gi|171316304|ref|ZP_02905525.1| NADH-quinone oxidoreductase, B subunit [Burkholderia ambifaria
           MEX-5]
 gi|172061208|ref|YP_001808860.1| NADH dehydrogenase subunit B [Burkholderia ambifaria MC40-6]
 gi|221211736|ref|ZP_03584715.1| NADH-quinone oxidoreductase subunit b (nadh dehydrogenase i subunit
           b) (ndh-1 subunit b) [Burkholderia multivorans CGD1]
 gi|122322642|sp|Q0BDD1|NUOB_BURCM RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|123244856|sp|Q1BV14|NUOB_BURCA RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|123568005|sp|Q39EE6|NUOB_BURS3 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|218527979|sp|B1YTQ6|NUOB_BURA4 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|218527980|sp|B1JVP0|NUOB_BURCC RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|218527981|sp|A0K922|NUOB_BURCH RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|218527982|sp|A4JGC9|NUOB_BURVG RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|218528023|sp|A9AFY8|NUOB_BURM1 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|218528071|sp|B4E5M1|NUOB_BURCJ RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|77967790|gb|ABB09170.1| NADH dehydrogenase subunit B [Burkholderia sp. 383]
 gi|105893376|gb|ABF76541.1| NADH dehydrogenase subunit B [Burkholderia cenocepacia AU 1054]
 gi|115282325|gb|ABI87842.1| NADH dehydrogenase subunit B [Burkholderia ambifaria AMMD]
 gi|116648358|gb|ABK08999.1| NADH dehydrogenase subunit B [Burkholderia cenocepacia HI2424]
 gi|134139589|gb|ABO55332.1| NADH dehydrogenase subunit B [Burkholderia vietnamiensis G4]
 gi|160341634|gb|ABX14720.1| NADH-quinone oxidoreductase, B subunit [Burkholderia multivorans
           ATCC 17616]
 gi|169816850|gb|ACA91433.1| NADH-quinone oxidoreductase, B subunit [Burkholderia cenocepacia
           MC0-3]
 gi|170136968|gb|EDT05216.1| NADH-quinone oxidoreductase, B subunit [Burkholderia ambifaria
           IOP40-10]
 gi|171098530|gb|EDT43331.1| NADH-quinone oxidoreductase, B subunit [Burkholderia ambifaria
           MEX-5]
 gi|171993725|gb|ACB64644.1| NADH-quinone oxidoreductase, B subunit [Burkholderia ambifaria
           MC40-6]
 gi|221169097|gb|EEE01565.1| NADH-quinone oxidoreductase subunit b (nadh dehydrogenase i subunit
           b) (ndh-1 subunit b) [Burkholderia multivorans CGD1]
 gi|325520398|gb|EGC99516.1| NADH dehydrogenase subunit B [Burkholderia sp. TJI49]
          Length = 159

 Score =  242 bits (617), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 114/151 (75%), Positives = 127/151 (84%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           +  +GF+ T+ D+L+ W RTGSL  MTFGLACCAVEMM A   RYDL+RFG   R SPRQ
Sbjct: 6   VLKEGFVTTTADKLINWTRTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGVVFRPSPRQ 65

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           SDVMIVAGTL NKMA ALRRVYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPV
Sbjct: 66  SDVMIVAGTLCNKMAPALRRVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPV 125

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           D+YVPGCPPTAEAL+YG++ LQ KIRR   +
Sbjct: 126 DVYVPGCPPTAEALVYGVIQLQAKIRRTNTI 156


>gi|315056963|ref|XP_003177856.1| NADH dehydrogenase iron-sulfur protein 7 [Arthroderma gypseum CBS
           118893]
 gi|311339702|gb|EFQ98904.1| NADH dehydrogenase iron-sulfur protein 7 [Arthroderma gypseum CBS
           118893]
          Length = 227

 Score =  242 bits (617), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 118/184 (64%), Positives = 136/184 (73%), Gaps = 4/184 (2%)

Query: 4   TTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFL---VTSVDQLVTWARTGSLMWMTF 60
           T  +  + S   S    K   +   + S+   +G L   +T++DQ+  WAR GSL  MTF
Sbjct: 40  TEQSSALQSTAGSVPARKPRREVP-LPSQEKPQGVLDYALTTLDQVANWARQGSLWPMTF 98

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           GLACCAVEMM  S PRYD +R G   RASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEP
Sbjct: 99  GLACCAVEMMHLSTPRYDQDRLGIIFRASPRQSDVMIVAGTLTNKMAPALRQVYDQMPEP 158

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           R+VISMGSCANGGGYYHYSYSV RGCDRIVPVDIYVPGCPPT+EAL+YGI  LQ+K+R  
Sbjct: 159 RWVISMGSCANGGGYYHYSYSVTRGCDRIVPVDIYVPGCPPTSEALMYGIFQLQRKMRNT 218

Query: 181 GNVK 184
              +
Sbjct: 219 KITR 222


>gi|71906589|ref|YP_284176.1| NADH dehydrogenase subunit B [Dechloromonas aromatica RCB]
 gi|123627979|sp|Q47HH5|NUOB_DECAR RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|71846210|gb|AAZ45706.1| NADH dehydrogenase subunit B [Dechloromonas aromatica RCB]
          Length = 158

 Score =  242 bits (617), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 115/151 (76%), Positives = 129/151 (85%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           +  +GF+ T+ D+L+ + RTGSL  MTFGLACCAVEM+ A + RYDL+RFG   R SPRQ
Sbjct: 6   VLQEGFVTTTADKLINYMRTGSLWPMTFGLACCAVEMIHAGVSRYDLDRFGVVFRPSPRQ 65

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           SDVMIVAGTLTNKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPV
Sbjct: 66  SDVMIVAGTLTNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPV 125

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           DIYVPGCPPTAEALIYGI+ LQ KIRR   +
Sbjct: 126 DIYVPGCPPTAEALIYGIIQLQNKIRRTNTI 156


>gi|226499630|ref|NP_001151765.1| LOC100285400 [Zea mays]
 gi|194708402|gb|ACF88285.1| unknown [Zea mays]
 gi|195621542|gb|ACG32601.1| NADH-ubiquinone oxidoreductase 20 kDa subunit [Zea mays]
 gi|195649579|gb|ACG44257.1| NADH-ubiquinone oxidoreductase 20 kDa subunit [Zea mays]
          Length = 200

 Score =  242 bits (617), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 114/144 (79%), Positives = 123/144 (85%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           F+V+ VD L+ WAR GS+  MTFGLACCAVEMM A   RYD +RFG   R SPRQSD MI
Sbjct: 49  FVVSKVDDLMNWARKGSIWPMTFGLACCAVEMMHAGASRYDFDRFGVIFRPSPRQSDCMI 108

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP
Sbjct: 109 VAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 168

Query: 158 GCPPTAEALIYGILLLQKKIRRVG 181
           GCPPTAEAL+YG+L LQKKI R  
Sbjct: 169 GCPPTAEALLYGVLQLQKKINRRK 192


>gi|190575277|ref|YP_001973122.1| NADH dehydrogenase subunit B [Stenotrophomonas maltophilia K279a]
 gi|194366603|ref|YP_002029213.1| NADH dehydrogenase subunit B [Stenotrophomonas maltophilia R551-3]
 gi|254524125|ref|ZP_05136180.1| NADH-ubiquinone oxidoreductase Nqo6 subunit [Stenotrophomonas sp.
           SKA14]
 gi|218528009|sp|B4SQT5|NUOB_STRM5 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|218528010|sp|B2FNX8|NUOB_STRMK RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|190013199|emb|CAQ46832.1| putative NADH dehydrogenase I chain B [Stenotrophomonas maltophilia
           K279a]
 gi|194349407|gb|ACF52530.1| NADH-quinone oxidoreductase, B subunit [Stenotrophomonas
           maltophilia R551-3]
 gi|219721716|gb|EED40241.1| NADH-ubiquinone oxidoreductase Nqo6 subunit [Stenotrophomonas sp.
           SKA14]
          Length = 184

 Score =  242 bits (617), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 118/184 (64%), Positives = 139/184 (75%), Gaps = 3/184 (1%)

Query: 1   MGLTTVNQKIISGQSSCSLEKVDADF-SRISSEITHKGFLVTSVDQLVTWARTGSLMWMT 59
           MG+      +++  +     +VD        + +  KGF+ TSVD L+ WARTGS+  MT
Sbjct: 1   MGVIQTLDGLMNNPT--PEGRVDDILRPEGDNPLLEKGFVTTSVDALLNWARTGSMWPMT 58

Query: 60  FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119
           FGLACCAVEMM A   R DL+R+G   R SPRQSDVMIVAGTL NKMA ALR+VYDQMP+
Sbjct: 59  FGLACCAVEMMHAGAARLDLDRYGVVFRPSPRQSDVMIVAGTLVNKMAPALRKVYDQMPD 118

Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           P++VISMGSCANGGGYYHYSYSVVRGCDR+VPVD+YVPGCPPTAEAL+YGIL LQKKI R
Sbjct: 119 PKWVISMGSCANGGGYYHYSYSVVRGCDRVVPVDVYVPGCPPTAEALVYGILQLQKKIWR 178

Query: 180 VGNV 183
              +
Sbjct: 179 TQTI 182


>gi|254796791|ref|YP_003081628.1| NADH-quinone oxidoreductase chain b [Neorickettsia risticii str.
           Illinois]
 gi|254590025|gb|ACT69387.1| NADH-quinone oxidoreductase chain b [Neorickettsia risticii str.
           Illinois]
          Length = 167

 Score =  242 bits (617), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 116/152 (76%), Positives = 127/152 (83%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP 90
           S +   G+LV  +D L+ WAR GSL  MTFGLACCAVEMM  +  RYD++RFG   R SP
Sbjct: 12  SNVGSDGYLVAKLDDLINWARAGSLWPMTFGLACCAVEMMHFTASRYDMDRFGMIFRPSP 71

Query: 91  RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150
           RQSDVMIVAGTLTNKMA ALRRVYDQM EP+YVISMGSCANGGGYYHYSYSVVRGCDRIV
Sbjct: 72  RQSDVMIVAGTLTNKMAPALRRVYDQMAEPKYVISMGSCANGGGYYHYSYSVVRGCDRIV 131

Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
           PVD+YVPGCPPTAEAL+YG+L LQKKI R  N
Sbjct: 132 PVDVYVPGCPPTAEALLYGVLCLQKKINRQRN 163


>gi|91776412|ref|YP_546168.1| NADH-quinone oxidoreductase, B subunit [Methylobacillus flagellatus
           KT]
 gi|123380391|sp|Q1GZL0|NUOB_METFK RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|91710399|gb|ABE50327.1| NADH dehydrogenase subunit B [Methylobacillus flagellatus KT]
          Length = 158

 Score =  242 bits (617), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 111/151 (73%), Positives = 127/151 (84%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           +  KGF+ T++D ++ + RTGSL  MTFGLACCAVEMM A   RYDL+RFG   R SPRQ
Sbjct: 6   VLEKGFVTTTLDTVINYTRTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGIVFRPSPRQ 65

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           SDVMIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSY+VVRGCDRIVPV
Sbjct: 66  SDVMIVAGTLVNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYAVVRGCDRIVPV 125

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           D+YVPGCPPTAEAL+YGI+ LQ KI+R   +
Sbjct: 126 DVYVPGCPPTAEALLYGIIQLQNKIKRTNTI 156


>gi|330817791|ref|YP_004361496.1| NADH dehydrogenase subunit B [Burkholderia gladioli BSR3]
 gi|327370184|gb|AEA61540.1| NADH dehydrogenase subunit B [Burkholderia gladioli BSR3]
          Length = 159

 Score =  241 bits (616), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 113/151 (74%), Positives = 127/151 (84%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           +  +GF+ T+ D+L+ W RTGSL  MTFGLACCAVEMM A   RYDL+RFG   R SPRQ
Sbjct: 6   VLKEGFVTTTADKLINWTRTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGVVFRPSPRQ 65

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           SDVMIVAGTL NKMA ALRRVY+QM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPV
Sbjct: 66  SDVMIVAGTLCNKMAPALRRVYEQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPV 125

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           D+YVPGCPPTAEAL+YG++ LQ KIRR   +
Sbjct: 126 DVYVPGCPPTAEALVYGVIQLQAKIRRTSTI 156


>gi|56478177|ref|YP_159766.1| NADH dehydrogenase subunit B [Aromatoleum aromaticum EbN1]
 gi|81356986|sp|Q5P1E9|NUOB_AZOSE RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|56314220|emb|CAI08865.1| NADH dehydrogenase I, chain B [Aromatoleum aromaticum EbN1]
          Length = 158

 Score =  241 bits (616), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 111/149 (74%), Positives = 126/149 (84%)

Query: 35  HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSD 94
            +GF+ TS+D ++ W RTGSL  MTFGLACCAVEM+ A   RYDL+RFG   R SPRQSD
Sbjct: 8   REGFVTTSLDAVINWTRTGSLWPMTFGLACCAVEMIHAGCARYDLDRFGVVFRPSPRQSD 67

Query: 95  VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154
           +MIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVD+
Sbjct: 68  LMIVAGTLCNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDV 127

Query: 155 YVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           YVPGCPPTAEAL+YGI+ LQ KI+R   +
Sbjct: 128 YVPGCPPTAEALLYGIIQLQNKIKRTNTI 156


>gi|328769253|gb|EGF79297.1| hypothetical protein BATDEDRAFT_12186 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 170

 Score =  241 bits (616), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 110/147 (74%), Positives = 127/147 (86%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           F++TS+D LV W RT S+  +TFGLACCAVEMM  + PRYD +R G   RASPRQ+DV+I
Sbjct: 19  FVLTSLDSLVNWNRTSSIWPLTFGLACCAVEMMHMATPRYDQDRLGIVFRASPRQADVLI 78

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGTLTNKMA ALR++YDQMP PR+VISMGSCANGGGYYHYSYSVVRGCDRI+PVDIYVP
Sbjct: 79  VAGTLTNKMAPALRKIYDQMPSPRWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVP 138

Query: 158 GCPPTAEALIYGILLLQKKIRRVGNVK 184
           GCPPT+EAL+YG+L LQKK+RR   VK
Sbjct: 139 GCPPTSEALLYGVLQLQKKMRRERVVK 165


>gi|28198172|ref|NP_778486.1| NADH dehydrogenase subunit B [Xylella fastidiosa Temecula1]
 gi|28056242|gb|AAO28135.1| NADH-ubiquinone oxidoreductase NQO6 subunit [Xylella fastidiosa
           Temecula1]
          Length = 191

 Score =  241 bits (616), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 118/183 (64%), Positives = 139/183 (75%), Gaps = 1/183 (0%)

Query: 1   MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTF 60
           MG+     ++++       +  D    +  S +  KG++ TSVD L+ WARTGS+  MTF
Sbjct: 8   MGVIQAIDRLMTNPIPDG-QVDDILRPQGESPLLQKGYVTTSVDALLNWARTGSMWPMTF 66

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           GLACCAVEMM A   R DL+R+G   R SPRQSDVMIVAGTL NKMA ALR+VYDQMP+P
Sbjct: 67  GLACCAVEMMHAGAARLDLDRYGIVFRPSPRQSDVMIVAGTLVNKMAPALRKVYDQMPDP 126

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           ++VISMGSCANGGGYYHYSYSVVRGCDRIVPVD+YVPGCPPTAEAL+YGIL LQKKI R 
Sbjct: 127 KWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALVYGILQLQKKIWRT 186

Query: 181 GNV 183
             +
Sbjct: 187 KTI 189


>gi|121598483|ref|YP_992470.1| NADH dehydrogenase subunit B [Burkholderia mallei SAVP1]
 gi|124385700|ref|YP_001026727.1| NADH dehydrogenase subunit B [Burkholderia mallei NCTC 10229]
 gi|126439724|ref|YP_001058339.1| NADH dehydrogenase subunit B [Burkholderia pseudomallei 668]
 gi|126450627|ref|YP_001079988.1| NADH dehydrogenase subunit B [Burkholderia mallei NCTC 10247]
 gi|126451839|ref|YP_001065578.1| NADH dehydrogenase subunit B [Burkholderia pseudomallei 1106a]
 gi|167562178|ref|ZP_02355094.1| NADH dehydrogenase subunit B [Burkholderia oklahomensis EO147]
 gi|167569423|ref|ZP_02362297.1| NADH dehydrogenase subunit B [Burkholderia oklahomensis C6786]
 gi|167580423|ref|ZP_02373297.1| NADH dehydrogenase subunit B [Burkholderia thailandensis TXDOH]
 gi|167618532|ref|ZP_02387163.1| NADH dehydrogenase subunit B [Burkholderia thailandensis Bt4]
 gi|167718844|ref|ZP_02402080.1| NADH dehydrogenase subunit B [Burkholderia pseudomallei DM98]
 gi|167737853|ref|ZP_02410627.1| NADH dehydrogenase subunit B [Burkholderia pseudomallei 14]
 gi|167815037|ref|ZP_02446717.1| NADH dehydrogenase subunit B [Burkholderia pseudomallei 91]
 gi|167823453|ref|ZP_02454924.1| NADH dehydrogenase subunit B [Burkholderia pseudomallei 9]
 gi|167836050|ref|ZP_02462933.1| NADH dehydrogenase subunit B [Burkholderia thailandensis MSMB43]
 gi|167845005|ref|ZP_02470513.1| NADH dehydrogenase subunit B [Burkholderia pseudomallei B7210]
 gi|167893546|ref|ZP_02480948.1| NADH dehydrogenase subunit B [Burkholderia pseudomallei 7894]
 gi|167901992|ref|ZP_02489197.1| NADH dehydrogenase subunit B [Burkholderia pseudomallei NCTC 13177]
 gi|167910228|ref|ZP_02497319.1| NADH dehydrogenase subunit B [Burkholderia pseudomallei 112]
 gi|167918261|ref|ZP_02505352.1| NADH dehydrogenase subunit B [Burkholderia pseudomallei BCC215]
 gi|254175674|ref|ZP_04882334.1| NADH-quinone oxidoreductase, B subunit [Burkholderia mallei ATCC
           10399]
 gi|254181186|ref|ZP_04887783.1| NADH-quinone oxidoreductase, B subunit [Burkholderia pseudomallei
           1655]
 gi|254190549|ref|ZP_04897056.1| NADH-quinone oxidoreductase, B subunit [Burkholderia pseudomallei
           Pasteur 52237]
 gi|254195108|ref|ZP_04901537.1| NADH-quinone oxidoreductase, B subunit [Burkholderia pseudomallei
           S13]
 gi|254202109|ref|ZP_04908472.1| NADH-quinone oxidoreductase, B subunit [Burkholderia mallei FMH]
 gi|254258086|ref|ZP_04949140.1| NADH-quinone oxidoreductase, B subunit [Burkholderia pseudomallei
           1710a]
 gi|254298534|ref|ZP_04965986.1| NADH-quinone oxidoreductase, B subunit [Burkholderia pseudomallei
           406e]
 gi|254359861|ref|ZP_04976131.1| NADH-quinone oxidoreductase, B subunit [Burkholderia mallei
           2002721280]
 gi|257139689|ref|ZP_05587951.1| NADH dehydrogenase subunit B [Burkholderia thailandensis E264]
 gi|218527942|sp|A3MIA2|NUOB1_BURM7 RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName:
           Full=NADH dehydrogenase I subunit B 1; AltName:
           Full=NDH-1 subunit B 1
 gi|218527943|sp|A2S458|NUOB1_BURM9 RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName:
           Full=NADH dehydrogenase I subunit B 1; AltName:
           Full=NDH-1 subunit B 1
 gi|218527965|sp|A1V2L7|NUOB1_BURMS RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName:
           Full=NADH dehydrogenase I subunit B 1; AltName:
           Full=NDH-1 subunit B 1
 gi|218527966|sp|A3NTA7|NUOB1_BURP0 RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName:
           Full=NADH dehydrogenase I subunit B 1; AltName:
           Full=NDH-1 subunit B 1
 gi|218527967|sp|A3N7L8|NUOB1_BURP6 RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName:
           Full=NADH dehydrogenase I subunit B 1; AltName:
           Full=NDH-1 subunit B 1
 gi|218528060|sp|Q62IN6|NUOB1_BURMA RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName:
           Full=NADH dehydrogenase I subunit B 1; AltName:
           Full=NDH-1 subunit B 1
 gi|218528063|sp|Q2SZN4|NUOB_BURTA RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|218528080|sp|Q63VN2|NUOB1_BURPS RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName:
           Full=NADH dehydrogenase I subunit B 1; AltName:
           Full=NDH-1 subunit B 1
 gi|218528081|sp|Q3JUA8|NUOB1_BURP1 RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName:
           Full=NADH dehydrogenase I subunit B 1; AltName:
           Full=NDH-1 subunit B 1
 gi|121227293|gb|ABM49811.1| NADH-quinone oxidoreductase, B subunit [Burkholderia mallei SAVP1]
 gi|124293720|gb|ABN02989.1| NADH-quinone oxidoreductase, B subunit [Burkholderia mallei NCTC
           10229]
 gi|126219217|gb|ABN82723.1| NADH-quinone oxidoreductase, B subunit [Burkholderia pseudomallei
           668]
 gi|126225481|gb|ABN89021.1| NADH-quinone oxidoreductase, B subunit [Burkholderia pseudomallei
           1106a]
 gi|126243497|gb|ABO06590.1| NADH-quinone oxidoreductase, B subunit [Burkholderia mallei NCTC
           10247]
 gi|147746356|gb|EDK53433.1| NADH-quinone oxidoreductase, B subunit [Burkholderia mallei FMH]
 gi|148029101|gb|EDK87006.1| NADH-quinone oxidoreductase, B subunit [Burkholderia mallei
           2002721280]
 gi|157808426|gb|EDO85596.1| NADH-quinone oxidoreductase, B subunit [Burkholderia pseudomallei
           406e]
 gi|157938224|gb|EDO93894.1| NADH-quinone oxidoreductase, B subunit [Burkholderia pseudomallei
           Pasteur 52237]
 gi|160696718|gb|EDP86688.1| NADH-quinone oxidoreductase, B subunit [Burkholderia mallei ATCC
           10399]
 gi|169651856|gb|EDS84549.1| NADH-quinone oxidoreductase, B subunit [Burkholderia pseudomallei
           S13]
 gi|184211724|gb|EDU08767.1| NADH-quinone oxidoreductase, B subunit [Burkholderia pseudomallei
           1655]
 gi|254216775|gb|EET06159.1| NADH-quinone oxidoreductase, B subunit [Burkholderia pseudomallei
           1710a]
          Length = 159

 Score =  241 bits (616), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 114/151 (75%), Positives = 127/151 (84%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           +  +GF+ T+ D+L+ W RTGSL  MTFGLACCAVEMM A   RYDL+RFG   R SPRQ
Sbjct: 6   VLKEGFVTTTADKLINWTRTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGVVFRPSPRQ 65

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           SDVMIVAGTL NKMA ALRRVYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPV
Sbjct: 66  SDVMIVAGTLCNKMAPALRRVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPV 125

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           D+YVPGCPPTAEAL+YG++ LQ KIRR   +
Sbjct: 126 DVYVPGCPPTAEALVYGVIQLQAKIRRTSTI 156


>gi|239816482|ref|YP_002945392.1| NADH dehydrogenase subunit B [Variovorax paradoxus S110]
 gi|259514693|sp|C5CT19|NUOB_VARPS RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|239803059|gb|ACS20126.1| NADH-quinone oxidoreductase, B subunit [Variovorax paradoxus S110]
          Length = 159

 Score =  241 bits (616), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 111/151 (73%), Positives = 129/151 (85%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           +  +GF+ T+ D +V WA+TGSL  MTFGLACCAVEMM A   RYD++RFG   R SPRQ
Sbjct: 6   VMKEGFVTTTYDSVVNWAKTGSLWPMTFGLACCAVEMMHAGAARYDIDRFGMLFRPSPRQ 65

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           SD+MIVAGTL NKMA ALR+VYDQMPEPR+V+SMGSCANGGGYYHYSYSVVRGCDRIVPV
Sbjct: 66  SDLMIVAGTLCNKMAPALRKVYDQMPEPRWVLSMGSCANGGGYYHYSYSVVRGCDRIVPV 125

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           D+YVPGCPPTAEAL+YG++ LQ+KIRR   +
Sbjct: 126 DVYVPGCPPTAEALLYGVIQLQQKIRRTNTI 156


>gi|171677913|ref|XP_001903907.1| hypothetical protein [Podospora anserina S mat+]
 gi|170937025|emb|CAP61683.1| unnamed protein product [Podospora anserina S mat+]
          Length = 224

 Score =  241 bits (616), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 113/184 (61%), Positives = 133/184 (72%), Gaps = 4/184 (2%)

Query: 5   TVNQKIISGQSSCSLEKVDADFS-RISSEITHKGFL---VTSVDQLVTWARTGSLMWMTF 60
             +   +       L K+       + S+   KGF+   +T++D +  W R  SL  MTF
Sbjct: 36  RKDAGAVQPHGGYGLSKLHERKEVPLPSQEGTKGFVQYALTTLDIITNWGRQSSLWPMTF 95

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           GLACCAVEMM  S PRYD +R G   RASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEP
Sbjct: 96  GLACCAVEMMHLSTPRYDQDRLGIIFRASPRQSDVMIVAGTLTNKMAPALRQVYDQMPEP 155

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           R+VISMGSCANGGGYYHYSYSVVRGCDR+VPVD+YVPGCPPT+EAL+YGI  LQ+K+R  
Sbjct: 156 RWVISMGSCANGGGYYHYSYSVVRGCDRVVPVDVYVPGCPPTSEALMYGIFQLQRKMRNT 215

Query: 181 GNVK 184
              +
Sbjct: 216 KITR 219


>gi|225680692|gb|EEH18976.1| NADH dehydrogenase iron-sulfur protein [Paracoccidioides
           brasiliensis Pb03]
          Length = 228

 Score =  241 bits (616), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 111/170 (65%), Positives = 129/170 (75%)

Query: 15  SSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASM 74
           ++    + +        +     F +T++DQ+  WAR  SL  MTFGLACCAVEMM  S 
Sbjct: 54  TATGKPRREVPLPSQEKKGGAMQFALTTLDQVTNWARQSSLWPMTFGLACCAVEMMHLST 113

Query: 75  PRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGG 134
           PRYD +R G   RASPRQSDVMIVAGTLTNKMA ALR+VYDQMP+PR+VISMGSCANGGG
Sbjct: 114 PRYDQDRLGIIFRASPRQSDVMIVAGTLTNKMAPALRQVYDQMPDPRWVISMGSCANGGG 173

Query: 135 YYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           YYHYSYSV RGCDRIVPVDIYVPGCPPT+EAL+YGI  LQKK+R+    +
Sbjct: 174 YYHYSYSVTRGCDRIVPVDIYVPGCPPTSEALMYGIFQLQKKMRQTRITR 223


>gi|226292374|gb|EEH47794.1| NADH-ubiquinone oxidoreductase 20 kDa subunit [Paracoccidioides
           brasiliensis Pb18]
          Length = 228

 Score =  241 bits (615), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 111/170 (65%), Positives = 129/170 (75%)

Query: 15  SSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASM 74
           ++    + +        +     F +T++DQ+  WAR  SL  MTFGLACCAVEMM  S 
Sbjct: 54  TATGKPRREVPLPSQEKKGGAMQFALTTLDQVTNWARQSSLWPMTFGLACCAVEMMHLST 113

Query: 75  PRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGG 134
           PRYD +R G   RASPRQSDVMIVAGTLTNKMA ALR+VYDQMP+PR+VISMGSCANGGG
Sbjct: 114 PRYDQDRLGIIFRASPRQSDVMIVAGTLTNKMAPALRQVYDQMPDPRWVISMGSCANGGG 173

Query: 135 YYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           YYHYSYSV RGCDRIVPVDIYVPGCPPT+EAL+YGI  LQKK+R+    +
Sbjct: 174 YYHYSYSVTRGCDRIVPVDIYVPGCPPTSEALMYGIFQLQKKMRQTRITR 223


>gi|53718848|ref|YP_107834.1| NADH dehydrogenase subunit B [Burkholderia pseudomallei K96243]
 gi|53725818|ref|YP_103433.1| NADH dehydrogenase subunit B [Burkholderia mallei ATCC 23344]
 gi|76808565|ref|YP_332845.1| NADH dehydrogenase subunit B [Burkholderia pseudomallei 1710b]
 gi|83720537|ref|YP_441615.1| NADH dehydrogenase subunit B [Burkholderia thailandensis E264]
 gi|134283897|ref|ZP_01770593.1| NADH-quinone oxidoreductase, B subunit [Burkholderia pseudomallei
           305]
 gi|251767151|ref|ZP_02266185.2| NADH-quinone oxidoreductase, B subunit [Burkholderia mallei PRL-20]
 gi|254207439|ref|ZP_04913789.1| NADH-quinone oxidoreductase, B subunit [Burkholderia mallei JHU]
 gi|52209262|emb|CAH35207.1| NADH dehydrogenase I chain B [Burkholderia pseudomallei K96243]
 gi|52429241|gb|AAU49834.1| NADH-quinone oxidoreductase, B subunit [Burkholderia mallei ATCC
           23344]
 gi|76578018|gb|ABA47493.1| NADH dehydrogenase I chain B [Burkholderia pseudomallei 1710b]
 gi|83654362|gb|ABC38425.1| NADH-quinone oxidoreductase, B subunit [Burkholderia thailandensis
           E264]
 gi|134244686|gb|EBA44784.1| NADH-quinone oxidoreductase, B subunit [Burkholderia pseudomallei
           305]
 gi|147751333|gb|EDK58400.1| NADH-quinone oxidoreductase, B subunit [Burkholderia mallei JHU]
 gi|243063701|gb|EES45887.1| NADH-quinone oxidoreductase, B subunit [Burkholderia mallei PRL-20]
          Length = 173

 Score =  241 bits (615), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 114/151 (75%), Positives = 127/151 (84%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           +  +GF+ T+ D+L+ W RTGSL  MTFGLACCAVEMM A   RYDL+RFG   R SPRQ
Sbjct: 20  VLKEGFVTTTADKLINWTRTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGVVFRPSPRQ 79

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           SDVMIVAGTL NKMA ALRRVYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPV
Sbjct: 80  SDVMIVAGTLCNKMAPALRRVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPV 139

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           D+YVPGCPPTAEAL+YG++ LQ KIRR   +
Sbjct: 140 DVYVPGCPPTAEALVYGVIQLQAKIRRTSTI 170


>gi|226470042|emb|CAX70302.1| NADH dehydrogenase (ubiquinone) Fe-S protein 7 [Schistosoma
           japonicum]
 gi|226489138|emb|CAX74918.1| NADH dehydrogenase (ubiquinone) Fe-S protein 7 [Schistosoma
           japonicum]
          Length = 207

 Score =  241 bits (615), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 103/180 (57%), Positives = 132/180 (73%), Gaps = 3/180 (1%)

Query: 5   TVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLAC 64
                 +         K  + F +   ++    F++T +D L  WAR  S+  +TFGLAC
Sbjct: 26  PSEPSKVDNPDETIPYKPYSPFPKPQGKLD---FVLTRLDDLANWARKNSIYPLTFGLAC 82

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           CAVEMM  + PRYD++R+G   RASPRQ+D+MIV+GT+TNKMA ALRR+YDQM  P++VI
Sbjct: 83  CAVEMMHIAGPRYDMDRYGVVFRASPRQADLMIVSGTVTNKMAPALRRIYDQMTHPKWVI 142

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           SMGSCANGGGYYHYSYSV+RGCDR++PVDIYVPGCPP+AEAL+Y IL LQKKI+   +V+
Sbjct: 143 SMGSCANGGGYYHYSYSVLRGCDRVIPVDIYVPGCPPSAEALMYSILQLQKKIKSEKHVQ 202


>gi|226372670|gb|ACO51960.1| NADH dehydrogenase iron-sulfur protein 7, mitochondrial precursor
           [Rana catesbeiana]
          Length = 217

 Score =  241 bits (615), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 124/172 (72%), Positives = 137/172 (79%), Gaps = 3/172 (1%)

Query: 4   TTVNQKIISGQSSCSLEKVDADFSRISSEITHKG-FLVTSVDQLVTWARTGSLMWMTFGL 62
           T  N+  IS   S   +K  A  +  SS  + KG F+VT +D LV WAR  SL  MTFGL
Sbjct: 33  TADNENSISA--SLVRQKSSAVPATKSSVPSGKGEFIVTKLDDLVNWARRSSLWPMTFGL 90

Query: 63  ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122
           ACCAVEMM  + PRYD++RFG   RASPRQ+DVMIVAGTLTNKMA ALR+VYDQMPEPRY
Sbjct: 91  ACCAVEMMHMAAPRYDMDRFGVVFRASPRQADVMIVAGTLTNKMAPALRKVYDQMPEPRY 150

Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQ 174
           V+SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQ
Sbjct: 151 VVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQ 202


>gi|29841262|gb|AAP06294.1| similar to probable NADH-ubiquinone oxidoreductase 20 kDa subunit
           precursor; complex I-20kC; CI-20KD [Schistosoma
           japonicum]
 gi|226470044|emb|CAX70303.1| NADH dehydrogenase (ubiquinone) Fe-S protein 7 [Schistosoma
           japonicum]
          Length = 207

 Score =  241 bits (615), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 103/180 (57%), Positives = 132/180 (73%), Gaps = 3/180 (1%)

Query: 5   TVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLAC 64
                 +         K  + F +   ++    F++T +D L  WAR  S+  +TFGLAC
Sbjct: 26  PSEPSKVDNPDESIPYKPYSPFPKPQGKLD---FVLTRLDDLANWARKNSIYPLTFGLAC 82

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           CAVEMM  + PRYD++R+G   RASPRQ+D+MIV+GT+TNKMA ALRR+YDQM  P++VI
Sbjct: 83  CAVEMMHIAGPRYDMDRYGVVFRASPRQADLMIVSGTVTNKMAPALRRIYDQMTHPKWVI 142

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           SMGSCANGGGYYHYSYSV+RGCDR++PVDIYVPGCPP+AEAL+Y IL LQKKI+   +V+
Sbjct: 143 SMGSCANGGGYYHYSYSVLRGCDRVIPVDIYVPGCPPSAEALMYSILQLQKKIKSEKHVQ 202


>gi|182680806|ref|YP_001828966.1| NADH dehydrogenase subunit B [Xylella fastidiosa M23]
 gi|238065246|sp|B2I785|NUOB_XYLF2 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|238065259|sp|Q87EQ4|NUOB_XYLFT RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|182630916|gb|ACB91692.1| NADH-quinone oxidoreductase, B subunit [Xylella fastidiosa M23]
 gi|307579274|gb|ADN63243.1| NADH dehydrogenase subunit B [Xylella fastidiosa subsp. fastidiosa
           GB514]
          Length = 184

 Score =  241 bits (615), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 118/183 (64%), Positives = 139/183 (75%), Gaps = 1/183 (0%)

Query: 1   MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTF 60
           MG+     ++++       +  D    +  S +  KG++ TSVD L+ WARTGS+  MTF
Sbjct: 1   MGVIQAIDRLMTNPIPDG-QVDDILRPQGESPLLQKGYVTTSVDALLNWARTGSMWPMTF 59

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           GLACCAVEMM A   R DL+R+G   R SPRQSDVMIVAGTL NKMA ALR+VYDQMP+P
Sbjct: 60  GLACCAVEMMHAGAARLDLDRYGIVFRPSPRQSDVMIVAGTLVNKMAPALRKVYDQMPDP 119

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           ++VISMGSCANGGGYYHYSYSVVRGCDRIVPVD+YVPGCPPTAEAL+YGIL LQKKI R 
Sbjct: 120 KWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALVYGILQLQKKIWRT 179

Query: 181 GNV 183
             +
Sbjct: 180 KTI 182


>gi|114777362|ref|ZP_01452359.1| NADH dehydrogenase subunit B [Mariprofundus ferrooxydans PV-1]
 gi|114552144|gb|EAU54646.1| NADH dehydrogenase subunit B [Mariprofundus ferrooxydans PV-1]
          Length = 158

 Score =  241 bits (615), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 111/151 (73%), Positives = 125/151 (82%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           +  KGF+ T+ D+L+  AR GSL  MTFGLACCAVEMM A   RYDL+RFG   R SPRQ
Sbjct: 6   VLEKGFITTTADKLINGARAGSLWPMTFGLACCAVEMMHAGASRYDLDRFGIVFRPSPRQ 65

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           SDVM+VAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSYSV RGCDRIVPV
Sbjct: 66  SDVMVVAGTLCNKMAPALRKVYDQMSEPRWVISMGSCANGGGYYHYSYSVTRGCDRIVPV 125

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           DIYVPGCPPTAEAL+YG + LQ+KI+R   +
Sbjct: 126 DIYVPGCPPTAEALLYGFIQLQEKIKRTNTI 156


>gi|295673086|ref|XP_002797089.1| NADH dehydrogenase iron-sulfur protein [Paracoccidioides
           brasiliensis Pb01]
 gi|226282461|gb|EEH38027.1| NADH dehydrogenase iron-sulfur protein [Paracoccidioides
           brasiliensis Pb01]
          Length = 228

 Score =  241 bits (615), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 111/170 (65%), Positives = 128/170 (75%)

Query: 15  SSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASM 74
           ++    + +        +     F +T++DQ+  WAR  SL  MTFGLACCAVEMM  S 
Sbjct: 54  TATGKPRREVPLPSQEKKGGAMQFALTTLDQVTNWARQSSLWPMTFGLACCAVEMMHLST 113

Query: 75  PRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGG 134
           PRYD +R G   RASPRQSDVMIVAGTLTNKMA ALR+VYDQMP+PR+VISMGSCANGGG
Sbjct: 114 PRYDQDRLGIIFRASPRQSDVMIVAGTLTNKMAPALRQVYDQMPDPRWVISMGSCANGGG 173

Query: 135 YYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           YYHYSYSV RGCDRIVPVDIYVPGCPPT+EAL+YGI  LQKK+R     +
Sbjct: 174 YYHYSYSVTRGCDRIVPVDIYVPGCPPTSEALMYGIFQLQKKMRHTRITR 223


>gi|114330926|ref|YP_747148.1| NADH dehydrogenase subunit B [Nitrosomonas eutropha C91]
 gi|122314158|sp|Q0AHJ9|NUOB_NITEC RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|114307940|gb|ABI59183.1| NADH dehydrogenase subunit B [Nitrosomonas eutropha C91]
          Length = 158

 Score =  240 bits (614), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 114/150 (76%), Positives = 125/150 (83%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
             KGF+ T++D L+ W RTGS+  MTFGLACCAVEMMQ    RYDL+RFG   R SPRQS
Sbjct: 7   LDKGFVTTNLDSLINWGRTGSMWPMTFGLACCAVEMMQTGASRYDLDRFGIVFRPSPRQS 66

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD 153
           DVMIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVD
Sbjct: 67  DVMIVAGTLCNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVD 126

Query: 154 IYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           IYVPGCPPTAEAL+YGI+ LQ KI R   +
Sbjct: 127 IYVPGCPPTAEALLYGIIQLQNKIWRTNTI 156


>gi|219130938|ref|XP_002185609.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217402949|gb|EEC42907.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 166

 Score =  240 bits (614), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 113/141 (80%), Positives = 126/141 (89%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           + ++ VD LV WAR GSL  MTFGLACCAVEMM A+  RYD+ERFG   RASPRQSDVMI
Sbjct: 15  YAISRVDDLVNWARKGSLWPMTFGLACCAVEMMHAAASRYDMERFGMVFRASPRQSDVMI 74

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGTLTNKMA ALR+VYDQMPEPR+V+SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP
Sbjct: 75  VAGTLTNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 134

Query: 158 GCPPTAEALIYGILLLQKKIR 178
           GCPPTAEAL+YG++ LQKK++
Sbjct: 135 GCPPTAEALLYGLIQLQKKVK 155


>gi|255943669|ref|XP_002562602.1| Pc20g00390 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211587337|emb|CAP85368.1| Pc20g00390 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 230

 Score =  240 bits (614), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 116/179 (64%), Positives = 132/179 (73%), Gaps = 2/179 (1%)

Query: 8   QKIISGQSSCSLEKVDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACC 65
           Q   S Q   +  K   +    S E       + +T++DQ+  WAR  SL  MTFGLACC
Sbjct: 47  QPSASAQQLTASGKARREVPLPSQEKKEGAMQYALTTLDQIANWARQSSLWPMTFGLACC 106

Query: 66  AVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVIS 125
           AVEMM  S PRYD +R G   RASPRQSDVMIVAGTLTNKMA ALR+VYDQMP+PR+VIS
Sbjct: 107 AVEMMHLSTPRYDQDRLGIIFRASPRQSDVMIVAGTLTNKMAPALRQVYDQMPDPRWVIS 166

Query: 126 MGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           MGSCANGGGYYHYSYSVVRGCDR+VPVDIYVPGCPPT+EAL+YGI  LQKK+R     +
Sbjct: 167 MGSCANGGGYYHYSYSVVRGCDRVVPVDIYVPGCPPTSEALMYGIFQLQKKMRHTRITR 225


>gi|238881092|gb|EEQ44730.1| NADH-ubiquinone oxidoreductase 20 kDa subunit [Candida albicans
           WO-1]
          Length = 226

 Score =  240 bits (614), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 107/169 (63%), Positives = 131/169 (77%), Gaps = 2/169 (1%)

Query: 18  SLEKVDADFSRISSE--ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMP 75
           + + +  DF  +S +       +++TS+D +  WAR  S   +TFGLACCAVEMM  S P
Sbjct: 53  TPQTLPTDFPLMSEKKATNAADYVLTSLDMIANWARKSSFWPVTFGLACCAVEMMHVSAP 112

Query: 76  RYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY 135
           RYD +R G   RASPRQSD+MIVAGTLTNKMA ALR+VYDQMP+P++VISMGSCANGGGY
Sbjct: 113 RYDQDRLGIIFRASPRQSDIMIVAGTLTNKMAPALRQVYDQMPDPKWVISMGSCANGGGY 172

Query: 136 YHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           YHYSYSVVRGCDR++PVDIYVPGCPPTAEAL+YG+  LQKK+ +    +
Sbjct: 173 YHYSYSVVRGCDRVIPVDIYVPGCPPTAEALMYGVFQLQKKMMKTRITR 221


>gi|241953755|ref|XP_002419599.1| NADH-ubiquinone oxidoreductase subunit, putative [Candida
           dubliniensis CD36]
 gi|223642939|emb|CAX43194.1| NADH-ubiquinone oxidoreductase subunit, putative [Candida
           dubliniensis CD36]
          Length = 218

 Score =  240 bits (614), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 106/181 (58%), Positives = 132/181 (72%)

Query: 4   TTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLA 63
            + ++ + + + + S    D              +++TS+D +  WAR  S   +TFGLA
Sbjct: 33  ISSHRYVSTKELTPSTLPTDFPLMSEKKATNAADYVLTSLDMIANWARKSSFWPVTFGLA 92

Query: 64  CCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYV 123
           CCAVEMM  S PRYD +R G   RASPRQSD+MIVAGTLTNKMA ALR+VYDQMP+P++V
Sbjct: 93  CCAVEMMHVSAPRYDQDRLGIIFRASPRQSDIMIVAGTLTNKMAPALRQVYDQMPDPKWV 152

Query: 124 ISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           ISMGSCANGGGYYHYSYSVVRGCDR++PVDIYVPGCPPTAEAL+YG+  LQKK+ +    
Sbjct: 153 ISMGSCANGGGYYHYSYSVVRGCDRVIPVDIYVPGCPPTAEALMYGVFQLQKKMMKTRIT 212

Query: 184 K 184
           +
Sbjct: 213 R 213


>gi|221199657|ref|ZP_03572701.1| NADH-quinone oxidoreductase, B subunit [Burkholderia multivorans
           CGD2M]
 gi|221205443|ref|ZP_03578458.1| NADH-quinone oxidoreductase, B subunit [Burkholderia multivorans
           CGD2]
 gi|221174281|gb|EEE06713.1| NADH-quinone oxidoreductase, B subunit [Burkholderia multivorans
           CGD2]
 gi|221180942|gb|EEE13345.1| NADH-quinone oxidoreductase, B subunit [Burkholderia multivorans
           CGD2M]
          Length = 153

 Score =  240 bits (614), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 114/150 (76%), Positives = 126/150 (84%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
             +GF+ T+ D+L+ W RTGSL  MTFGLACCAVEMM A   RYDL+RFG   R SPRQS
Sbjct: 1   MKEGFVTTTADKLINWTRTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGVVFRPSPRQS 60

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD 153
           DVMIVAGTL NKMA ALRRVYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVD
Sbjct: 61  DVMIVAGTLCNKMAPALRRVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVD 120

Query: 154 IYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           +YVPGCPPTAEAL+YG++ LQ KIRR   +
Sbjct: 121 VYVPGCPPTAEALVYGVIQLQAKIRRTNTI 150


>gi|322711383|gb|EFZ02956.1| NADH-ubiquinone oxidoreductase 20 kD subunit [Metarhizium
           anisopliae ARSEF 23]
          Length = 316

 Score =  240 bits (614), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 113/159 (71%), Positives = 128/159 (80%), Gaps = 3/159 (1%)

Query: 29  ISSEITHKGFL---VTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA 85
           + SE   KG +   +T++D +  WAR  SL  MTFGLACCAVEMM  S PRYD +R G  
Sbjct: 153 LPSEEGTKGVVQYALTTLDVIANWARQSSLWPMTFGLACCAVEMMHLSTPRYDQDRLGII 212

Query: 86  PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRG 145
            RASPRQSDVMIVAGTLTNKMA ALR+VYDQMP+PR+VISMGSCANGGGYYHYSYSVVRG
Sbjct: 213 FRASPRQSDVMIVAGTLTNKMAPALRQVYDQMPDPRWVISMGSCANGGGYYHYSYSVVRG 272

Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           CDRIVPVDIYVPGCPPT+EAL+YGI  LQ+K+R     +
Sbjct: 273 CDRIVPVDIYVPGCPPTSEALMYGIFQLQRKMRNTKITR 311


>gi|257095318|ref|YP_003168959.1| NADH dehydrogenase subunit B [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
 gi|257047842|gb|ACV37030.1| NADH-quinone oxidoreductase, B subunit [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 158

 Score =  240 bits (614), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 111/151 (73%), Positives = 128/151 (84%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           I  +GF+ T+ D+L+ + RTGSL  M+FGLACCA+EM+ A   RYDL+RFG   R SPRQ
Sbjct: 6   ILQEGFVTTTADKLINYVRTGSLWPMSFGLACCAIEMIHAGCSRYDLDRFGIVFRPSPRQ 65

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           SDVM+VAGTLTNKMA A+R+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPV
Sbjct: 66  SDVMVVAGTLTNKMAPAMRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPV 125

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           DIYVPGCPPTAEALIYG++ LQ KIRR   +
Sbjct: 126 DIYVPGCPPTAEALIYGLIQLQNKIRRTNTI 156


>gi|238028142|ref|YP_002912373.1| NADH dehydrogenase subunit B [Burkholderia glumae BGR1]
 gi|237877336|gb|ACR29669.1| NADH-quinone oxidoreductase, B subunit [Burkholderia glumae BGR1]
          Length = 159

 Score =  240 bits (614), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 113/151 (74%), Positives = 127/151 (84%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           +  +GF+ T+ D+L+ W RTGSL  +TFGLACCAVEMM A   RYDL+RFG   R SPRQ
Sbjct: 6   VLKEGFVTTTADKLINWTRTGSLWPVTFGLACCAVEMMHAGAARYDLDRFGVVFRPSPRQ 65

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           SDVMIVAGTL NKMA ALRRVYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPV
Sbjct: 66  SDVMIVAGTLCNKMAPALRRVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPV 125

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           D+YVPGCPPTAEAL+YG++ LQ KIRR   +
Sbjct: 126 DVYVPGCPPTAEALVYGVIQLQAKIRRTSTI 156


>gi|297604806|ref|NP_001056143.2| Os05g0533700 [Oryza sativa Japonica Group]
 gi|255676519|dbj|BAF18057.2| Os05g0533700 [Oryza sativa Japonica Group]
          Length = 154

 Score =  240 bits (614), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 112/144 (77%), Positives = 122/144 (84%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           F+++ VD L+ WAR GS+  MTFGLACCAVEMM     RYD +RFG   R SPRQSD MI
Sbjct: 3   FVISKVDDLMNWARRGSIWPMTFGLACCAVEMMHTGASRYDFDRFGVIFRPSPRQSDCMI 62

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP
Sbjct: 63  VAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 122

Query: 158 GCPPTAEALIYGILLLQKKIRRVG 181
           GCPPTAEAL+YG+L LQKKI R  
Sbjct: 123 GCPPTAEALLYGVLQLQKKINRRR 146


>gi|266656|sp|P29918|NQO6_PARDE RecName: Full=NADH-quinone oxidoreductase subunit 6; AltName:
           Full=NADH dehydrogenase I subunit 6; AltName: Full=NDH-1
           subunit 6
          Length = 173

 Score =  240 bits (614), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 124/154 (80%), Positives = 138/154 (89%)

Query: 23  DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82
           D   + ++ E+  KGFL+T+ + ++ WAR GSL WMTFGLACCAVEMMQ SMPRYDLERF
Sbjct: 12  DLATAELNRELQDKGFLLTTTEDIINWARNGSLHWMTFGLACCAVEMMQTSMPRYDLERF 71

Query: 83  GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142
           G APRASPRQSD+MIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSV
Sbjct: 72  GTAPRASPRQSDLMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSV 131

Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKK 176
           VRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQ++
Sbjct: 132 VRGCDRIVPVDIYVPGCPPTAEALLYGILQLQRR 165


>gi|71275689|ref|ZP_00651974.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit [Xylella fastidiosa
           Dixon]
 gi|71897855|ref|ZP_00680081.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit [Xylella fastidiosa
           Ann-1]
 gi|170729490|ref|YP_001774923.1| NADH dehydrogenase subunit B [Xylella fastidiosa M12]
 gi|254767800|sp|B0U1W6|NUOB_XYLFM RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|71163580|gb|EAO13297.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit [Xylella fastidiosa
           Dixon]
 gi|71732410|gb|EAO34464.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit [Xylella fastidiosa
           Ann-1]
 gi|167964283|gb|ACA11293.1| NADH dehydrogenase [Xylella fastidiosa M12]
          Length = 184

 Score =  240 bits (614), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 118/183 (64%), Positives = 139/183 (75%), Gaps = 1/183 (0%)

Query: 1   MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTF 60
           MG+     ++++       +  D    +  S +  KG++ TSVD L+ WARTGS+  MTF
Sbjct: 1   MGVIQAIDRLMTNPIPDG-QVDDILRPQGESPLLQKGYVTTSVDALLNWARTGSMWPMTF 59

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           GLACCAVEMM A   R DL+R+G   R SPRQSDVMIVAGTL NKMA ALR+VYDQMP+P
Sbjct: 60  GLACCAVEMMHAGAARLDLDRYGIVFRPSPRQSDVMIVAGTLVNKMAPALRKVYDQMPDP 119

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           ++VISMGSCANGGGYYHYSYSVVRGCDRIVPVD+YVPGCPPTAEAL+YGIL LQKKI R 
Sbjct: 120 KWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALVYGILQLQKKIWRT 179

Query: 181 GNV 183
             +
Sbjct: 180 QTI 182


>gi|68472189|ref|XP_719890.1| potential mitochondrial Complex I, NUKM_20kd subunit [Candida
           albicans SC5314]
 gi|68472424|ref|XP_719773.1| potential mitochondrial Complex I, NUKM_20kd subunit [Candida
           albicans SC5314]
 gi|46441605|gb|EAL00901.1| potential mitochondrial Complex I, NUKM_20kd subunit [Candida
           albicans SC5314]
 gi|46441731|gb|EAL01026.1| potential mitochondrial Complex I, NUKM_20kd subunit [Candida
           albicans SC5314]
          Length = 223

 Score =  240 bits (613), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 107/169 (63%), Positives = 131/169 (77%), Gaps = 2/169 (1%)

Query: 18  SLEKVDADFSRISSE--ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMP 75
           + + +  DF  +S +       +++TS+D +  WAR  S   +TFGLACCAVEMM  S P
Sbjct: 50  TPQTLPTDFPLMSEKKATNAADYVLTSLDMIANWARKSSFWPVTFGLACCAVEMMHVSAP 109

Query: 76  RYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY 135
           RYD +R G   RASPRQSD+MIVAGTLTNKMA ALR+VYDQMP+P++VISMGSCANGGGY
Sbjct: 110 RYDQDRLGIIFRASPRQSDIMIVAGTLTNKMAPALRQVYDQMPDPKWVISMGSCANGGGY 169

Query: 136 YHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           YHYSYSVVRGCDR++PVDIYVPGCPPTAEAL+YG+  LQKK+ +    +
Sbjct: 170 YHYSYSVVRGCDRVIPVDIYVPGCPPTAEALMYGVFQLQKKMMKTRITR 218


>gi|121714236|ref|XP_001274729.1| NADH-ubiquinone oxidoreductase subunit B, putative [Aspergillus
           clavatus NRRL 1]
 gi|119402882|gb|EAW13303.1| NADH-ubiquinone oxidoreductase subunit B, putative [Aspergillus
           clavatus NRRL 1]
          Length = 225

 Score =  240 bits (613), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 101/146 (69%), Positives = 121/146 (82%)

Query: 39  LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIV 98
           ++T+ D L+ WAR GSL  + FGLACC VEMM ASMPRYD +R G   RASPRQ+DVMIV
Sbjct: 75  ILTTTDALINWARQGSLWPLAFGLACCGVEMMAASMPRYDQDRQGIIFRASPRQADVMIV 134

Query: 99  AGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPG 158
           AGT+TNKMA ALR++YDQMP+P++VISMGSCANGGGYYH+SYSVVRG DR+VPVDIYVPG
Sbjct: 135 AGTVTNKMAPALRQLYDQMPDPKWVISMGSCANGGGYYHHSYSVVRGVDRLVPVDIYVPG 194

Query: 159 CPPTAEALIYGILLLQKKIRRVGNVK 184
           CPPT EAL+Y +  LQ+K+R     +
Sbjct: 195 CPPTPEALLYAVFQLQRKMRGTKVTR 220


>gi|255550832|ref|XP_002516464.1| NADH-plastoquinone oxidoreductase, putative [Ricinus communis]
 gi|223544284|gb|EEF45805.1| NADH-plastoquinone oxidoreductase, putative [Ricinus communis]
          Length = 215

 Score =  240 bits (613), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 113/179 (63%), Positives = 131/179 (73%), Gaps = 1/179 (0%)

Query: 4   TTVNQKIISGQSSCSLEKVDADFSRISSEITH-KGFLVTSVDQLVTWARTGSLMWMTFGL 62
           TT+              +     +   + ++    ++++ VD L+ WAR GS+  MTFGL
Sbjct: 29  TTLPSLSAEATPPTPYGRAPPPSTSFPTGLSKTAEYVISKVDDLMNWARRGSIWPMTFGL 88

Query: 63  ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122
           ACCAVEMM     RYDL+RFG   R SPRQSD MIVAGTLTNKMA ALR+VYDQMPEPR+
Sbjct: 89  ACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDCMIVAGTLTNKMAPALRKVYDQMPEPRW 148

Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
           VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG+L LQK+I R  
Sbjct: 149 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGLLQLQKRINRRK 207


>gi|197105267|ref|YP_002130644.1| NADH dehydrogenase I, B subunit [Phenylobacterium zucineum HLK1]
 gi|238065189|sp|B4RCM8|NUOB_PHEZH RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|196478687|gb|ACG78215.1| NADH dehydrogenase I, B subunit [Phenylobacterium zucineum HLK1]
          Length = 193

 Score =  240 bits (613), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 129/161 (80%), Positives = 143/161 (88%)

Query: 23  DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82
           D  F  +S  +  KGF+  + D L+TWARTGSLMWMTFGLACCAVEMMQASMPRYDLER+
Sbjct: 31  DPYFDGVSQRLADKGFVTAAADDLITWARTGSLMWMTFGLACCAVEMMQASMPRYDLERY 90

Query: 83  GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142
           GFAPRASPRQSDVMIVAGTL NKMA ALR+VYDQMPEPRYVISMGSCANGGGYY++SYS 
Sbjct: 91  GFAPRASPRQSDVMIVAGTLVNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYYFSYST 150

Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           VRGCDR+VPVD+YVPGCPPTAEAL+YG+L LQKKIRR G +
Sbjct: 151 VRGCDRVVPVDVYVPGCPPTAEALVYGVLQLQKKIRRTGTI 191


>gi|3025802|gb|AAC12755.1| NADH-ubiqionone oxidoreductase subunit NuoB [Sinorhizobium
           meliloti]
          Length = 165

 Score =  240 bits (613), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 132/158 (83%), Positives = 143/158 (90%), Gaps = 1/158 (0%)

Query: 28  RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAP 86
            I++E+  KGFLVTS D+L+ WARTGSLMW     LACCAVEMMQ SMPRYD ERFGFAP
Sbjct: 7   EINNELADKGFLVTSTDELINWARTGSLMWNELSVLACCAVEMMQMSMPRYDAERFGFAP 66

Query: 87  RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGC 146
           RASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGC
Sbjct: 67  RASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGC 126

Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           DR+VPVDIYVPGCPPTAEAL+YG+LLLQKKIRR G ++
Sbjct: 127 DRVVPVDIYVPGCPPTAEALLYGVLLLQKKIRRTGTIE 164


>gi|148361101|ref|YP_001252308.1| NADH dehydrogenase I subunit B [Legionella pneumophila str. Corby]
 gi|218527993|sp|A5IHW2|NUOB_LEGPC RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|148282874|gb|ABQ56962.1| NADH dehydrogenase I, B subunit [Legionella pneumophila str. Corby]
          Length = 158

 Score =  240 bits (613), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 115/149 (77%), Positives = 129/149 (86%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP 90
           +E+  K F +T+V++LV WAR+GS+  MTFGLACCAVEMM     RYDL+RFG   R SP
Sbjct: 4   AELEKKVFELTTVEKLVGWARSGSMWPMTFGLACCAVEMMHVGAARYDLDRFGIIFRPSP 63

Query: 91  RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150
           RQSDVMIVAGTL NKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRIV
Sbjct: 64  RQSDVMIVAGTLCNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIV 123

Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           PVD+YVPGCPPTAEAL+YGI+ LQ KIRR
Sbjct: 124 PVDVYVPGCPPTAEALLYGIIQLQNKIRR 152


>gi|285017793|ref|YP_003375504.1| NADH-quinone oxidoreductase chain b (nadh dehydrogenaseI chain b)
           (ndh-1, chain b) (nuo2) oxidoreductase [Xanthomonas
           albilineans GPE PC73]
 gi|283473011|emb|CBA15516.1| probable nadh-quinone oxidoreductase chain b (nadh dehydrogenaseI
           chain b) (ndh-1, chain b) (nuo2). oxidoreductase protein
           [Xanthomonas albilineans]
          Length = 184

 Score =  240 bits (613), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 118/184 (64%), Positives = 139/184 (75%), Gaps = 3/184 (1%)

Query: 1   MGLTTVNQKIISGQSSCSLEKVDADF-SRISSEITHKGFLVTSVDQLVTWARTGSLMWMT 59
           MG+     ++++        +VD        + +  KG++ TSVD L+ WARTGS+  MT
Sbjct: 1   MGVIQTLDRLMTNP--IPEGRVDDILRPEGENPLLEKGYVTTSVDALLNWARTGSMWPMT 58

Query: 60  FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119
           FGLACCAVEMM A   R DL+R+G   R SPRQSDVMIVAGTL NKMA ALR+VYDQMP+
Sbjct: 59  FGLACCAVEMMHAGAARLDLDRYGVVFRPSPRQSDVMIVAGTLVNKMAPALRKVYDQMPD 118

Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           P++VISMGSCANGGGYYHYSYSVVRGCDRIVPVD+YVPGCPPTAEAL+YGIL LQKKI R
Sbjct: 119 PKWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALVYGILQLQKKIWR 178

Query: 180 VGNV 183
              +
Sbjct: 179 TQTI 182


>gi|121604331|ref|YP_981660.1| NADH dehydrogenase subunit B [Polaromonas naphthalenivorans CJ2]
 gi|218528003|sp|A1VM61|NUOB_POLNA RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|120593300|gb|ABM36739.1| NADH dehydrogenase subunit B [Polaromonas naphthalenivorans CJ2]
          Length = 159

 Score =  240 bits (613), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 112/149 (75%), Positives = 126/149 (84%)

Query: 35  HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSD 94
            +GF+ TS D +V WA+TGSL  MTFGLACCAVEMM A   RYD++RFG   R SPRQSD
Sbjct: 8   KEGFVTTSYDSVVNWAKTGSLWPMTFGLACCAVEMMHAGAARYDIDRFGMLFRPSPRQSD 67

Query: 95  VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154
           +MIVAGTL NKM  ALR+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVD+
Sbjct: 68  LMIVAGTLCNKMGPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDV 127

Query: 155 YVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           YVPGCPPTAEAL+YGI+ LQ+KIRR   +
Sbjct: 128 YVPGCPPTAEALLYGIIQLQQKIRRTNTI 156


>gi|48843827|gb|AAT47086.1| putative NADH-ubiquinone oxidoreductase 20 kDa subunit [Oryza
           sativa Japonica Group]
 gi|125553102|gb|EAY98811.1| hypothetical protein OsI_20756 [Oryza sativa Indica Group]
 gi|215769469|dbj|BAH01698.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 204

 Score =  240 bits (613), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 112/144 (77%), Positives = 122/144 (84%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           F+++ VD L+ WAR GS+  MTFGLACCAVEMM     RYD +RFG   R SPRQSD MI
Sbjct: 53  FVISKVDDLMNWARRGSIWPMTFGLACCAVEMMHTGASRYDFDRFGVIFRPSPRQSDCMI 112

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP
Sbjct: 113 VAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 172

Query: 158 GCPPTAEALIYGILLLQKKIRRVG 181
           GCPPTAEAL+YG+L LQKKI R  
Sbjct: 173 GCPPTAEALLYGVLQLQKKINRRR 196


>gi|21243431|ref|NP_643013.1| NADH dehydrogenase subunit B [Xanthomonas axonopodis pv. citri str.
           306]
 gi|21108984|gb|AAM37549.1| NADH-ubiquinone oxidoreductase NQO6 subunit [Xanthomonas axonopodis
           pv. citri str. 306]
          Length = 191

 Score =  240 bits (613), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 120/184 (65%), Positives = 140/184 (76%), Gaps = 3/184 (1%)

Query: 1   MGLT-TVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMT 59
           MG+  T++  + +      +E  D       + +  KG++ TSVD L+ WARTGS+  MT
Sbjct: 8   MGVIQTLDSLMTNPMPEGRVE--DILRPEGENPLLEKGYVTTSVDALLNWARTGSMWPMT 65

Query: 60  FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119
           FGLACCAVEMM A   R DL+R+G   R SPRQSDVMIVAGTL NKMA ALR+VYDQMP+
Sbjct: 66  FGLACCAVEMMHAGASRLDLDRYGVVFRPSPRQSDVMIVAGTLVNKMAPALRKVYDQMPD 125

Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           P++VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQKKI R
Sbjct: 126 PKWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALVYGILQLQKKIWR 185

Query: 180 VGNV 183
              +
Sbjct: 186 TQTI 189


>gi|255732844|ref|XP_002551345.1| NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial
           precursor [Candida tropicalis MYA-3404]
 gi|240131086|gb|EER30647.1| NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial
           precursor [Candida tropicalis MYA-3404]
          Length = 212

 Score =  240 bits (613), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 108/169 (63%), Positives = 131/169 (77%), Gaps = 2/169 (1%)

Query: 18  SLEKVDADFSRISSE--ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMP 75
           + + +  DF  +S +       +++TS+D +  WAR  S   +TFGLACCAVEMM  S P
Sbjct: 39  TPQTLPTDFPLMSEKKATNAADYVLTSLDAIANWARKSSFWPVTFGLACCAVEMMHVSAP 98

Query: 76  RYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY 135
           RYD +R G   RASPRQSD+MIVAGTLTNKMA ALR+VYDQMP+P++VISMGSCANGGGY
Sbjct: 99  RYDQDRLGIIFRASPRQSDIMIVAGTLTNKMAPALRQVYDQMPDPKWVISMGSCANGGGY 158

Query: 136 YHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           YHYSYSVVRGCDR+VPVDIYVPGCPPTAEAL+YG+  LQKK+ +    +
Sbjct: 159 YHYSYSVVRGCDRVVPVDIYVPGCPPTAEALMYGVFQLQKKMMKTRITR 207


>gi|58582858|ref|YP_201874.1| NADH dehydrogenase subunit B [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|84624723|ref|YP_452095.1| NADH dehydrogenase subunit B [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|166712613|ref|ZP_02243820.1| NADH dehydrogenase subunit B [Xanthomonas oryzae pv. oryzicola
           BLS256]
 gi|58427452|gb|AAW76489.1| NADH-ubiquinone oxidoreductase NQO6 subunit [Xanthomonas oryzae pv.
           oryzae KACC10331]
 gi|84368663|dbj|BAE69821.1| NADH-ubiquinone oxidoreductase NQO6 subunit [Xanthomonas oryzae pv.
           oryzae MAFF 311018]
          Length = 191

 Score =  240 bits (613), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 120/184 (65%), Positives = 141/184 (76%), Gaps = 3/184 (1%)

Query: 1   MGLT-TVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMT 59
           MG+  T+++ + +      +E  D       + +  KG++ TSVD L+ WARTGS+  MT
Sbjct: 8   MGVIQTLDRLMTNPMPEGRVE--DILRPEGENPLLEKGYVTTSVDALLNWARTGSMWPMT 65

Query: 60  FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119
           FGLACCAVEMM A   R DL+R+G   R SPRQSDVMIVAGTL NKMA ALR+VYDQMP+
Sbjct: 66  FGLACCAVEMMHAGASRLDLDRYGVVFRPSPRQSDVMIVAGTLVNKMAPALRKVYDQMPD 125

Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           P++VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQKKI R
Sbjct: 126 PKWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALVYGILQLQKKIWR 185

Query: 180 VGNV 183
              +
Sbjct: 186 TQTI 189


>gi|298370383|ref|ZP_06981699.1| NADH dehydrogenase (ubiquinone), B subunit [Neisseria sp. oral
           taxon 014 str. F0314]
 gi|298281843|gb|EFI23332.1| NADH dehydrogenase (ubiquinone), B subunit [Neisseria sp. oral
           taxon 014 str. F0314]
          Length = 197

 Score =  240 bits (613), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 109/151 (72%), Positives = 128/151 (84%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           +  KGF+ TS D ++ + RTGSL  +TFGLACCAVEMM A M RYDL+RFG   R SPRQ
Sbjct: 43  VLKKGFITTSADTVLNYMRTGSLWPVTFGLACCAVEMMHAGMARYDLDRFGIIFRPSPRQ 102

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           +D+MIVAGTLTNKMA ALRRVYDQ+ EPR+V+SMGSCANGGGYYHYSYSVVRG DR+VPV
Sbjct: 103 ADLMIVAGTLTNKMAPALRRVYDQLAEPRWVLSMGSCANGGGYYHYSYSVVRGADRVVPV 162

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           D+YVPGCPPTAEALIYG++ LQ+KI+R   +
Sbjct: 163 DVYVPGCPPTAEALIYGLMQLQQKIKRTSTI 193


>gi|302679558|ref|XP_003029461.1| hypothetical protein SCHCODRAFT_69693 [Schizophyllum commune H4-8]
 gi|300103151|gb|EFI94558.1| hypothetical protein SCHCODRAFT_69693 [Schizophyllum commune H4-8]
          Length = 236

 Score =  240 bits (613), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 107/173 (61%), Positives = 133/173 (76%)

Query: 10  IISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEM 69
           +  GQS  ++    ++   + +      +++ + D++  WAR  S+  +TFGLACCAVEM
Sbjct: 57  VEKGQSFRAVVNAQSNQHSLETPQNKAEYVLATFDKIANWARQSSMWPVTFGLACCAVEM 116

Query: 70  MQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSC 129
           M  +  RYD +R G   RASPRQS++MIVAGTLTNKMA ALR+VYDQMPEPR+V+SMGSC
Sbjct: 117 MHMAAARYDQDRLGIIFRASPRQSEIMIVAGTLTNKMAPALRKVYDQMPEPRWVVSMGSC 176

Query: 130 ANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
           ANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG+L LQ+K+RR   
Sbjct: 177 ANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGMLQLQRKMRRSRK 229


>gi|15836909|ref|NP_297597.1| NADH dehydrogenase subunit B [Xylella fastidiosa 9a5c]
 gi|9105129|gb|AAF83117.1|AE003884_2 NADH-ubiquinone oxidoreductase, NQO6 subunit [Xylella fastidiosa
           9a5c]
          Length = 191

 Score =  240 bits (613), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 118/182 (64%), Positives = 138/182 (75%), Gaps = 1/182 (0%)

Query: 1   MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTF 60
           MG+     ++++       +  D    +  S +  KG++ TSVD L+ WARTGS+  MTF
Sbjct: 8   MGVIQAIDRLMTNPIPDG-QVDDILRPQGESPLLQKGYVTTSVDALLNWARTGSMWPMTF 66

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           GLACCAVEMM A   R DL+R+G   R SPRQSDVMIVAGTL NKMA ALR+VYDQMP+P
Sbjct: 67  GLACCAVEMMHAGAARLDLDRYGIVFRPSPRQSDVMIVAGTLVNKMAPALRKVYDQMPDP 126

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           ++VISMGSCANGGGYYHYSYSVVRGCDRIVPVD+YVPGCPPTAEAL+YGIL LQKKI R 
Sbjct: 127 KWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALVYGILQLQKKIWRT 186

Query: 181 GN 182
             
Sbjct: 187 QT 188


>gi|255956935|ref|XP_002569220.1| Pc21g22510 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211590931|emb|CAP97148.1| Pc21g22510 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 222

 Score =  240 bits (612), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 109/147 (74%), Positives = 126/147 (85%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           +++TS+D +  WAR GSL  ++FGLACCAVEMM  SMPRYD +R G   RASPRQSDVMI
Sbjct: 71  YVLTSLDGIANWARQGSLWPLSFGLACCAVEMMHLSMPRYDQDRLGIIFRASPRQSDVMI 130

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGT+TNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRG DR++PVDIY+P
Sbjct: 131 VAGTVTNKMAPALRQVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGVDRLIPVDIYLP 190

Query: 158 GCPPTAEALIYGILLLQKKIRRVGNVK 184
           GCPPTAEAL+YGI  LQKK+RR    +
Sbjct: 191 GCPPTAEALMYGIFQLQKKMRRTRITR 217


>gi|119172964|ref|XP_001239009.1| NADH-ubiquinone oxidoreductase subunit [Coccidioides immitis RS]
          Length = 213

 Score =  240 bits (612), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 109/181 (60%), Positives = 136/181 (75%), Gaps = 4/181 (2%)

Query: 4   TTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLA 63
           T + ++  S  S  +L+ V  D    + +       +T+ D LV WAR GSL  ++FGLA
Sbjct: 32  TYIQRQPSSTWSGNALKPVKHD----AEKGAPLQHFLTTTDNLVNWARQGSLWPLSFGLA 87

Query: 64  CCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYV 123
           CC VEMM ASMPRYD +R G   RASPRQ+DVM+VAGT+TNKMA ALR +YDQMP+P++V
Sbjct: 88  CCGVEMMSASMPRYDQDRLGIIFRASPRQADVMLVAGTVTNKMAPALRLLYDQMPDPKWV 147

Query: 124 ISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           ISMGSCANGGGYYHYSYSV+RG DRI+PVDIYVPGCPPT EAL+YG+ LLQK++R+    
Sbjct: 148 ISMGSCANGGGYYHYSYSVLRGVDRIIPVDIYVPGCPPTPEALLYGVFLLQKRMRKTRIT 207

Query: 184 K 184
           +
Sbjct: 208 R 208


>gi|58267664|ref|XP_570988.1| hypothetical protein [Cryptococcus neoformans var. neoformans
           JEC21]
 gi|57227222|gb|AAW43681.1| conserved hypothetical protein [Cryptococcus neoformans var.
           neoformans JEC21]
          Length = 250

 Score =  240 bits (612), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 108/180 (60%), Positives = 136/180 (75%)

Query: 2   GLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFG 61
            + + +    +     ++ +  ++   + +      ++++++D++V W R GS+  MTFG
Sbjct: 63  AINSYDHSPSTTLPDTTIAQQKSNQLSLETPRNGAEYVLSTLDKIVNWGRQGSMWPMTFG 122

Query: 62  LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPR 121
           LACCAVEMM  +  RYD +R G   RASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPR
Sbjct: 123 LACCAVEMMHMAAARYDQDRLGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPR 182

Query: 122 YVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
           +VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG+L L +K+RR  
Sbjct: 183 WVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGMLQLMRKMRRNR 242


>gi|134112065|ref|XP_775568.1| hypothetical protein CNBE2820 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50258227|gb|EAL20921.1| hypothetical protein CNBE2820 [Cryptococcus neoformans var.
           neoformans B-3501A]
          Length = 250

 Score =  240 bits (612), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 108/180 (60%), Positives = 136/180 (75%)

Query: 2   GLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFG 61
            + + +    +     ++ +  ++   + +      ++++++D++V W R GS+  MTFG
Sbjct: 63  AINSYDHSPSTTLPDTTIAQQKSNQLSLETPRNGAEYVLSTLDKIVNWGRQGSMWPMTFG 122

Query: 62  LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPR 121
           LACCAVEMM  +  RYD +R G   RASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPR
Sbjct: 123 LACCAVEMMHMAAARYDQDRLGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPR 182

Query: 122 YVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
           +VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG+L L +K+RR  
Sbjct: 183 WVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGMLQLMRKMRRNR 242


>gi|145612619|ref|XP_001412223.1| mitochondrial NADH-ubiquinone oxidoreductase 20 kD subunit
           [Magnaporthe oryzae 70-15]
 gi|145019756|gb|EDK03984.1| mitochondrial NADH-ubiquinone oxidoreductase 20 kD subunit
           [Magnaporthe oryzae 70-15]
          Length = 222

 Score =  240 bits (612), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 115/178 (64%), Positives = 135/178 (75%), Gaps = 3/178 (1%)

Query: 10  IISGQSSCSLEKVDADFSRISSEITHKGFL---VTSVDQLVTWARTGSLMWMTFGLACCA 66
           + + QSS  L + +     + S+   KG +   +T++D +  W R  SL  MTFGLACCA
Sbjct: 40  VPAAQSSTGLARPERKEVPLPSQEGTKGVVQYALTTLDIIANWGRQSSLWPMTFGLACCA 99

Query: 67  VEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISM 126
           VEMM  S PRYD +R G   RASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPR+VISM
Sbjct: 100 VEMMHLSTPRYDQDRLGIIFRASPRQSDVMIVAGTLTNKMAPALRQVYDQMPEPRWVISM 159

Query: 127 GSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           GSCANGGGYYHYSYSVVRGCDRIVPVD+YVPGCPPT+EAL+YGI  LQ+K+R     +
Sbjct: 160 GSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTSEALMYGIFQLQRKMRNTKITR 217


>gi|67642191|ref|ZP_00440951.1| NADH-quinone oxidoreductase chain b (nadh dehydrogenasei, chain b)
           (ndh-1, chain b) [Burkholderia mallei GB8 horse 4]
 gi|217420025|ref|ZP_03451531.1| NADH-quinone oxidoreductase, B subunit [Burkholderia pseudomallei
           576]
 gi|226195363|ref|ZP_03790952.1| NADH-quinone oxidoreductase, B subunit [Burkholderia pseudomallei
           Pakistan 9]
 gi|237811583|ref|YP_002896034.1| NADH-quinone oxidoreductase, b subunit [Burkholderia pseudomallei
           MSHR346]
 gi|242316907|ref|ZP_04815923.1| NADH-quinone oxidoreductase, B subunit [Burkholderia pseudomallei
           1106b]
 gi|217397329|gb|EEC37345.1| NADH-quinone oxidoreductase, B subunit [Burkholderia pseudomallei
           576]
 gi|225932565|gb|EEH28563.1| NADH-quinone oxidoreductase, B subunit [Burkholderia pseudomallei
           Pakistan 9]
 gi|237506251|gb|ACQ98569.1| NADH-quinone oxidoreductase, b subunit [Burkholderia pseudomallei
           MSHR346]
 gi|238523287|gb|EEP86726.1| NADH-quinone oxidoreductase chain b (nadh dehydrogenasei, chain b)
           (ndh-1, chain b) [Burkholderia mallei GB8 horse 4]
 gi|242140146|gb|EES26548.1| NADH-quinone oxidoreductase, B subunit [Burkholderia pseudomallei
           1106b]
          Length = 153

 Score =  240 bits (612), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 114/150 (76%), Positives = 126/150 (84%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
             +GF+ T+ D+L+ W RTGSL  MTFGLACCAVEMM A   RYDL+RFG   R SPRQS
Sbjct: 1   MKEGFVTTTADKLINWTRTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGVVFRPSPRQS 60

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD 153
           DVMIVAGTL NKMA ALRRVYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVD
Sbjct: 61  DVMIVAGTLCNKMAPALRRVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVD 120

Query: 154 IYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           +YVPGCPPTAEAL+YG++ LQ KIRR   +
Sbjct: 121 VYVPGCPPTAEALVYGVIQLQAKIRRTSTI 150


>gi|78048408|ref|YP_364583.1| NADH dehydrogenase subunit B [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|294624677|ref|ZP_06703347.1| NADH dehydrogenase beta subunit [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|294666776|ref|ZP_06732010.1| NADH dehydrogenase beta subunit [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|325924676|ref|ZP_08186114.1| NADH dehydrogenase subunit B [Xanthomonas perforans 91-118]
 gi|123584672|sp|Q3BRN0|NUOB_XANC5 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|238065262|sp|Q8PJ41|NUOB_XANAC RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|78036838|emb|CAJ24531.1| NADH-ubiquinone oxidoreductase NQO6 subunit [Xanthomonas campestris
           pv. vesicatoria str. 85-10]
 gi|292601033|gb|EFF45100.1| NADH dehydrogenase beta subunit [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292603437|gb|EFF46854.1| NADH dehydrogenase beta subunit [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|325544882|gb|EGD16227.1| NADH dehydrogenase subunit B [Xanthomonas perforans 91-118]
          Length = 184

 Score =  240 bits (612), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 120/184 (65%), Positives = 140/184 (76%), Gaps = 3/184 (1%)

Query: 1   MGLT-TVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMT 59
           MG+  T++  + +      +E  D       + +  KG++ TSVD L+ WARTGS+  MT
Sbjct: 1   MGVIQTLDSLMTNPMPEGRVE--DILRPEGENPLLEKGYVTTSVDALLNWARTGSMWPMT 58

Query: 60  FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119
           FGLACCAVEMM A   R DL+R+G   R SPRQSDVMIVAGTL NKMA ALR+VYDQMP+
Sbjct: 59  FGLACCAVEMMHAGASRLDLDRYGVVFRPSPRQSDVMIVAGTLVNKMAPALRKVYDQMPD 118

Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           P++VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQKKI R
Sbjct: 119 PKWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALVYGILQLQKKIWR 178

Query: 180 VGNV 183
              +
Sbjct: 179 TQTI 182


>gi|224284596|gb|ACN40031.1| unknown [Picea sitchensis]
          Length = 205

 Score =  240 bits (612), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 116/179 (64%), Positives = 130/179 (72%)

Query: 5   TVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLAC 64
           TV         S SL          +       ++++ +D LV WAR GS+  MTFGLAC
Sbjct: 21  TVAPTKAEAAGSSSLSAPTPYNPSATGLSKPAEYVISKIDALVNWARKGSIWPMTFGLAC 80

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           CAVEMM     RYDL+RFG   R SPRQSD MIVAGTLTNKMA ALR+VYDQMPEPR+VI
Sbjct: 81  CAVEMMHTGAARYDLDRFGIIFRPSPRQSDCMIVAGTLTNKMAPALRKVYDQMPEPRWVI 140

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           SMGSCANGG YYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG+L LQKKI R  ++
Sbjct: 141 SMGSCANGGRYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGLLQLQKKIHRRKDL 199


>gi|302753456|ref|XP_002960152.1| hypothetical protein SELMODRAFT_270168 [Selaginella moellendorffii]
 gi|302804466|ref|XP_002983985.1| hypothetical protein SELMODRAFT_156186 [Selaginella moellendorffii]
 gi|300148337|gb|EFJ14997.1| hypothetical protein SELMODRAFT_156186 [Selaginella moellendorffii]
 gi|300171091|gb|EFJ37691.1| hypothetical protein SELMODRAFT_270168 [Selaginella moellendorffii]
          Length = 200

 Score =  240 bits (612), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 108/147 (73%), Positives = 124/147 (84%)

Query: 37  GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVM 96
            F+++ +D ++ + R GS+  MTFGLACCAVEMM     RYDL+RFG   R SPRQSD M
Sbjct: 48  NFVISKLDSVINYVRAGSIWPMTFGLACCAVEMMHTGAARYDLDRFGMIFRPSPRQSDCM 107

Query: 97  IVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV 156
           IVAGTLTNKMA ALRRVYDQMPEPR+V+SMGSCANGGGYYHYSY+VVRGCDRIVPVDIYV
Sbjct: 108 IVAGTLTNKMAPALRRVYDQMPEPRWVVSMGSCANGGGYYHYSYAVVRGCDRIVPVDIYV 167

Query: 157 PGCPPTAEALIYGILLLQKKIRRVGNV 183
           PGCPPTAEAL+YG+L LQKKI+R   +
Sbjct: 168 PGCPPTAEALLYGLLQLQKKIKRRKQI 194


>gi|261197135|ref|XP_002624970.1| NADH-ubiquinone oxidoreductase subunit B [Ajellomyces dermatitidis
           SLH14081]
 gi|239595600|gb|EEQ78181.1| NADH-ubiquinone oxidoreductase subunit B [Ajellomyces dermatitidis
           SLH14081]
 gi|239606495|gb|EEQ83482.1| NADH-ubiquinone oxidoreductase subunit B [Ajellomyces dermatitidis
           ER-3]
 gi|327356325|gb|EGE85182.1| NADH-ubiquinone oxidoreductase subunit B [Ajellomyces dermatitidis
           ATCC 18188]
          Length = 223

 Score =  240 bits (612), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 111/165 (67%), Positives = 128/165 (77%)

Query: 20  EKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDL 79
            +++        ++    F +T++DQ+  WAR  SL  MTFGLACCAVEMM  S PRYD 
Sbjct: 54  PRIEVPLPSQEKKVGAMQFALTTLDQVTNWARQSSLWPMTFGLACCAVEMMHLSTPRYDQ 113

Query: 80  ERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS 139
           +R G   RASPRQSDVMIVAGTLTNKMA ALR+VYDQMP+PR+VISMGSCANGGGYYHYS
Sbjct: 114 DRLGIIFRASPRQSDVMIVAGTLTNKMAPALRQVYDQMPDPRWVISMGSCANGGGYYHYS 173

Query: 140 YSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           YSV RGCDRIVPVDIYVPGCPPT+EAL+YGI  LQKK+R     +
Sbjct: 174 YSVTRGCDRIVPVDIYVPGCPPTSEALMYGIFQLQKKMRHTRITR 218


>gi|289665174|ref|ZP_06486755.1| NADH dehydrogenase subunit B [Xanthomonas campestris pv. vasculorum
           NCPPB702]
 gi|289667379|ref|ZP_06488454.1| NADH dehydrogenase subunit B [Xanthomonas campestris pv. musacearum
           NCPPB4381]
 gi|238065260|sp|Q5GXT2|NUOB_XANOR RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|238065261|sp|Q2P0V6|NUOB_XANOM RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
          Length = 184

 Score =  240 bits (612), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 120/184 (65%), Positives = 141/184 (76%), Gaps = 3/184 (1%)

Query: 1   MGLT-TVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMT 59
           MG+  T+++ + +      +E  D       + +  KG++ TSVD L+ WARTGS+  MT
Sbjct: 1   MGVIQTLDRLMTNPMPEGRVE--DILRPEGENPLLEKGYVTTSVDALLNWARTGSMWPMT 58

Query: 60  FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119
           FGLACCAVEMM A   R DL+R+G   R SPRQSDVMIVAGTL NKMA ALR+VYDQMP+
Sbjct: 59  FGLACCAVEMMHAGASRLDLDRYGVVFRPSPRQSDVMIVAGTLVNKMAPALRKVYDQMPD 118

Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           P++VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQKKI R
Sbjct: 119 PKWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALVYGILQLQKKIWR 178

Query: 180 VGNV 183
              +
Sbjct: 179 TQTI 182


>gi|218528068|sp|Q9PGJ4|NUOB_XYLFA RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
          Length = 184

 Score =  240 bits (612), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 118/182 (64%), Positives = 138/182 (75%), Gaps = 1/182 (0%)

Query: 1   MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTF 60
           MG+     ++++       +  D    +  S +  KG++ TSVD L+ WARTGS+  MTF
Sbjct: 1   MGVIQAIDRLMTNPIPDG-QVDDILRPQGESPLLQKGYVTTSVDALLNWARTGSMWPMTF 59

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           GLACCAVEMM A   R DL+R+G   R SPRQSDVMIVAGTL NKMA ALR+VYDQMP+P
Sbjct: 60  GLACCAVEMMHAGAARLDLDRYGIVFRPSPRQSDVMIVAGTLVNKMAPALRKVYDQMPDP 119

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           ++VISMGSCANGGGYYHYSYSVVRGCDRIVPVD+YVPGCPPTAEAL+YGIL LQKKI R 
Sbjct: 120 KWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALVYGILQLQKKIWRT 179

Query: 181 GN 182
             
Sbjct: 180 QT 181


>gi|326489346|dbj|BAK01656.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326511367|dbj|BAJ87697.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 201

 Score =  240 bits (612), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 114/144 (79%), Positives = 123/144 (85%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           F+V+ VD L+ WAR GS+  MTFGLACCAVEMM A   RYD +RFG   R SPRQSD MI
Sbjct: 50  FVVSKVDDLMNWARRGSIWPMTFGLACCAVEMMHAGAARYDFDRFGVIFRPSPRQSDCMI 109

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP
Sbjct: 110 VAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 169

Query: 158 GCPPTAEALIYGILLLQKKIRRVG 181
           GCPPTAEAL+YG+L LQKKI R  
Sbjct: 170 GCPPTAEALLYGVLQLQKKINRRK 193


>gi|21231959|ref|NP_637876.1| NADH dehydrogenase subunit B [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66767914|ref|YP_242676.1| NADH dehydrogenase subunit B [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|188991030|ref|YP_001903040.1| NADH dehydrogenase subunit B [Xanthomonas campestris pv. campestris
           str. B100]
 gi|21113690|gb|AAM41800.1| NADH-ubiquinone oxidoreductase NQO6 subunit [Xanthomonas campestris
           pv. campestris str. ATCC 33913]
 gi|66573246|gb|AAY48656.1| NADH-ubiquinone oxidoreductase NQO6 subunit [Xanthomonas campestris
           pv. campestris str. 8004]
 gi|167732790|emb|CAP50984.1| NADH-ubiquinone oxidoreductase NQO6 subunit [Xanthomonas campestris
           pv. campestris]
          Length = 191

 Score =  239 bits (611), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 120/184 (65%), Positives = 141/184 (76%), Gaps = 3/184 (1%)

Query: 1   MGLT-TVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMT 59
           MG+  T+++ + +      +E  D       + +  KG++ TSVD L+ WARTGS+  MT
Sbjct: 8   MGVIQTLDRLMTNPMPEGRVE--DILRPEGENPLLEKGYVTTSVDALLNWARTGSMWPMT 65

Query: 60  FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119
           FGLACCAVEMM A   R DL+R+G   R SPRQSDVMIVAGTL NKMA ALR+VYDQMP+
Sbjct: 66  FGLACCAVEMMHAGAARLDLDRYGVVFRPSPRQSDVMIVAGTLVNKMAPALRKVYDQMPD 125

Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           P++VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQKKI R
Sbjct: 126 PKWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALVYGILQLQKKIWR 185

Query: 180 VGNV 183
              +
Sbjct: 186 TQTI 189


>gi|225559531|gb|EEH07814.1| NADH-ubiquinone oxidoreductase [Ajellomyces capsulatus G186AR]
          Length = 228

 Score =  239 bits (611), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 117/183 (63%), Positives = 135/183 (73%), Gaps = 2/183 (1%)

Query: 4   TTVNQKIISGQSSCSLEKVDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFG 61
           T V +         + +K+  +F   S E       + +T++DQ+  WAR GSL  MTFG
Sbjct: 41  TEVEKHEYGSAPLTATDKLRREFPLPSQEKEGGAMQYALTTLDQVTNWARQGSLWPMTFG 100

Query: 62  LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPR 121
           LACCAVEMM  S PRYD +R G   RASPRQSDVMIVAGTLTNKMA ALR+VYDQMP+PR
Sbjct: 101 LACCAVEMMHLSTPRYDQDRLGIIFRASPRQSDVMIVAGTLTNKMAPALRQVYDQMPDPR 160

Query: 122 YVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
           +VISMGSCANGGGYYHYSYSV RGCDRIVPVDIYVPGCPPT+EAL+YGI  LQKK+R   
Sbjct: 161 WVISMGSCANGGGYYHYSYSVTRGCDRIVPVDIYVPGCPPTSEALMYGIFQLQKKMRHTR 220

Query: 182 NVK 184
             +
Sbjct: 221 ITR 223


>gi|319787442|ref|YP_004146917.1| NADH-quinone oxidoreductase subunit beta [Pseudoxanthomonas
           suwonensis 11-1]
 gi|317465954|gb|ADV27686.1| NADH-quinone oxidoreductase, B subunit [Pseudoxanthomonas
           suwonensis 11-1]
          Length = 192

 Score =  239 bits (611), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 123/185 (66%), Positives = 140/185 (75%), Gaps = 5/185 (2%)

Query: 1   MGLTTVNQKIISGQSSCSLEKVDADFSRISSE--ITHKGFLVTSVDQLVTWARTGSLMWM 58
           MG+     ++++       E    D  R + E  +  KG++ TSVD LV WARTGS+  M
Sbjct: 1   MGVIQTIDRLMTNP---MPEARVEDILRPAGENPLLEKGYVTTSVDALVNWARTGSMWPM 57

Query: 59  TFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMP 118
           TFGLACCAVEMM A   R DL+R+G   R SPRQSDVMIVAGTL NKMA ALR+VYDQMP
Sbjct: 58  TFGLACCAVEMMHAGAARLDLDRYGVVFRPSPRQSDVMIVAGTLVNKMAPALRKVYDQMP 117

Query: 119 EPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           +P++VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQKKI 
Sbjct: 118 DPKWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALVYGILQLQKKIW 177

Query: 179 RVGNV 183
           R   V
Sbjct: 178 RTQTV 182


>gi|217075608|gb|ACJ86164.1| unknown [Medicago truncatula]
          Length = 198

 Score =  239 bits (611), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 111/140 (79%), Positives = 123/140 (87%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           ++++ VD L+ WARTGS+  MTFGLACCAVEMM     RYDL+RFG   R SPRQSD MI
Sbjct: 59  YVISKVDNLMNWARTGSIWPMTFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDCMI 118

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGTLTNKMA ALR+VYDQMPEPR+V+SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP
Sbjct: 119 VAGTLTNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 178

Query: 158 GCPPTAEALIYGILLLQKKI 177
           GCPPTAEAL+YG+L LQKKI
Sbjct: 179 GCPPTAEALLYGLLQLQKKI 198


>gi|313227729|emb|CBY22878.1| unnamed protein product [Oikopleura dioica]
          Length = 228

 Score =  239 bits (611), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 111/163 (68%), Positives = 128/163 (78%)

Query: 21  KVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLE 80
            +  +  RI        ++ T +D +  +    SL  MTFGLACCAVEMM  + PRYD++
Sbjct: 36  PIKREADRIKKFDNKVEYVTTKLDDIKNYISANSLWPMTFGLACCAVEMMHFAAPRYDMD 95

Query: 81  RFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSY 140
           RFG   RASPRQSD+MIVAGTL+NKMA ALRRVYDQMP PRYV+SMGSCANGGGYYHYSY
Sbjct: 96  RFGVVFRASPRQSDLMIVAGTLSNKMAPALRRVYDQMPFPRYVLSMGSCANGGGYYHYSY 155

Query: 141 SVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           SVVRG DRIVPVD+YVPGCPP+AEAL+YGILLLQKKI+R  NV
Sbjct: 156 SVVRGVDRIVPVDVYVPGCPPSAEALLYGILLLQKKIKRSANV 198


>gi|112434059|gb|ABI18374.1| NADH-quinone oxidoreductase chain B [Ehrlichia ruminantium]
          Length = 172

 Score =  239 bits (611), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 115/153 (75%), Positives = 127/153 (83%), Gaps = 4/153 (2%)

Query: 34  THKGFLVTSVDQLVT----WARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS 89
            H+GF+VT    L+     WAR+ SL  MTFGLACCAVEMM  +  RYDL+R+G   RAS
Sbjct: 18  NHRGFMVTKFSDLINYVSSWARSNSLWPMTFGLACCAVEMMHTAASRYDLDRYGVMFRAS 77

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQ+DVMIVAGTLTNKMA ALR+VYDQM EPRYVISMGSCANGGGYYHYSYSVVRGCDRI
Sbjct: 78  PRQADVMIVAGTLTNKMAPALRKVYDQMTEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 137

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
           VPVDIYVPGCPPTAEAL+YGIL LQ+KI R  +
Sbjct: 138 VPVDIYVPGCPPTAEALLYGILCLQQKINRTAS 170


>gi|325921410|ref|ZP_08183267.1| NADH dehydrogenase subunit B [Xanthomonas gardneri ATCC 19865]
 gi|325548168|gb|EGD19165.1| NADH dehydrogenase subunit B [Xanthomonas gardneri ATCC 19865]
          Length = 184

 Score =  239 bits (611), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 118/184 (64%), Positives = 139/184 (75%), Gaps = 3/184 (1%)

Query: 1   MGLTTVNQKIISGQSSCSLEKVDADF-SRISSEITHKGFLVTSVDQLVTWARTGSLMWMT 59
           MG+     ++++        ++D        + +  KG++ TSVD L+ WARTGS+  MT
Sbjct: 1   MGVIQTLDRLMTNP--MPEGRLDDILRPEGENPLLEKGYVTTSVDALLNWARTGSMWPMT 58

Query: 60  FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119
           FGLACCAVEMM A   R DL+R+G   R SPRQSDVMIVAGTL NKMA ALR+VYDQMP+
Sbjct: 59  FGLACCAVEMMHAGAARLDLDRYGVVFRPSPRQSDVMIVAGTLVNKMAPALRKVYDQMPD 118

Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           P++VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQKKI R
Sbjct: 119 PKWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALVYGILQLQKKIWR 178

Query: 180 VGNV 183
              +
Sbjct: 179 TQTI 182


>gi|240272844|gb|EER36371.1| NADH-ubiquinone oxidoreductase [Ajellomyces capsulatus H143]
 gi|325088617|gb|EGC41927.1| NADH-ubiquinone oxidoreductase [Ajellomyces capsulatus H88]
          Length = 228

 Score =  239 bits (611), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 112/173 (64%), Positives = 130/173 (75%)

Query: 12  SGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQ 71
           +  ++    + +        E     + +T++DQ+  WAR GSL  MTFGLACCAVEMM 
Sbjct: 51  APLTATGKLRREVPLPSQEKEGGAMQYALTTLDQVTNWARQGSLWPMTFGLACCAVEMMH 110

Query: 72  ASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCAN 131
            S PRYD +R G   RASPRQSDVMIVAGTLTNKMA ALR+VYDQMP+PR+VISMGSCAN
Sbjct: 111 LSTPRYDQDRLGIIFRASPRQSDVMIVAGTLTNKMAPALRQVYDQMPDPRWVISMGSCAN 170

Query: 132 GGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           GGGYYHYSYSV RGCDRIVPVDIYVPGCPPT+EAL+YGI  LQKK+R     +
Sbjct: 171 GGGYYHYSYSVTRGCDRIVPVDIYVPGCPPTSEALMYGIFQLQKKMRHTRITR 223


>gi|71897767|ref|ZP_00679993.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit [Xylella fastidiosa
           Ann-1]
 gi|71732322|gb|EAO34376.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit [Xylella fastidiosa
           Ann-1]
          Length = 184

 Score =  239 bits (611), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 119/184 (64%), Positives = 139/184 (75%), Gaps = 3/184 (1%)

Query: 1   MGLTTVNQKIISGQSSCSLEKVDADF-SRISSEITHKGFLVTSVDQLVTWARTGSLMWMT 59
           MG+     ++++         VD     +  S +  KG++ TSVD L+ WARTGS+  MT
Sbjct: 1   MGVIQAIDRLMTNP--IPDGHVDDILRPQGESPLLQKGYVTTSVDALLNWARTGSMWPMT 58

Query: 60  FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119
           FGLACCAVEMM A   R DL+R+G   R SPRQSDVMIVAGTL NKMA ALR+VYDQMP+
Sbjct: 59  FGLACCAVEMMHAGAARLDLDRYGIVFRPSPRQSDVMIVAGTLVNKMAPALRKVYDQMPD 118

Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           P++VISMGSCANGGGYYHYSYSVVRGCDRIVPVD+YVPGCPPTAEAL+YGIL LQKKI R
Sbjct: 119 PKWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALVYGILQLQKKIWR 178

Query: 180 VGNV 183
              +
Sbjct: 179 TQTI 182


>gi|18461218|dbj|BAB84415.1| putative NADH2 dehydrogenase (ubiquinone) chain PSST precursor
           [Oryza sativa Japonica Group]
 gi|125527525|gb|EAY75639.1| hypothetical protein OsI_03544 [Oryza sativa Indica Group]
 gi|222619176|gb|EEE55308.1| hypothetical protein OsJ_03280 [Oryza sativa Japonica Group]
          Length = 199

 Score =  239 bits (611), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 113/155 (72%), Positives = 125/155 (80%)

Query: 27  SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP 86
              + +     F+++ VD L+ WAR GS+  MTFGLACCAVEMM A   RYD +RFG   
Sbjct: 37  PPPAPQSKAAEFVISKVDDLMNWARRGSIWPMTFGLACCAVEMMHAGASRYDFDRFGVIF 96

Query: 87  RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGC 146
           R SPRQSD MIVAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGC
Sbjct: 97  RPSPRQSDCMIVAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGC 156

Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
           DRIVPVDIYVPGCPPTAEAL+YG+L LQKKI R  
Sbjct: 157 DRIVPVDIYVPGCPPTAEALLYGVLQLQKKINRRK 191


>gi|291042878|ref|ZP_06568619.1| NADH-quinone oxidoreductase subunit B [Neisseria gonorrhoeae DGI2]
 gi|291013312|gb|EFE05278.1| NADH-quinone oxidoreductase subunit B [Neisseria gonorrhoeae DGI2]
          Length = 197

 Score =  239 bits (611), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 109/151 (72%), Positives = 128/151 (84%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           +  KGF+ TS D ++ + RTGSL  +TFGLACCAVEMM A M RYDL+RFG   R SPRQ
Sbjct: 43  VLKKGFITTSADTVLNYMRTGSLWPVTFGLACCAVEMMHAGMARYDLDRFGIIFRPSPRQ 102

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           +D+MIVAGTLTNKMA ALRRVYDQ+ EPR+V+SMGSCANGGGYYHYSYSVVRG DR+VPV
Sbjct: 103 ADLMIVAGTLTNKMAPALRRVYDQLAEPRWVLSMGSCANGGGYYHYSYSVVRGADRVVPV 162

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           D+YVPGCPPTAEALIYG++ LQ+KI+R   +
Sbjct: 163 DVYVPGCPPTAEALIYGLIQLQQKIKRTSTI 193


>gi|302879341|ref|YP_003847905.1| NADH-quinone oxidoreductase, B subunit [Gallionella
           capsiferriformans ES-2]
 gi|302582130|gb|ADL56141.1| NADH-quinone oxidoreductase, B subunit [Gallionella
           capsiferriformans ES-2]
          Length = 160

 Score =  239 bits (610), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 113/151 (74%), Positives = 127/151 (84%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           I  KG + T++D ++ + RTGSL  MTFGLACCAVEMMQA   RYDL+RFG   R SPRQ
Sbjct: 6   ILEKGVVTTTLDTIINYTRTGSLWPMTFGLACCAVEMMQAGASRYDLDRFGIVFRPSPRQ 65

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           SDVMIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPV
Sbjct: 66  SDVMIVAGTLCNKMAPALRKVYDQMSEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPV 125

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           DIYVPGCPPTAEAL+YG++ LQ KI+R   +
Sbjct: 126 DIYVPGCPPTAEALLYGLIQLQNKIKRTNTI 156


>gi|255067282|ref|ZP_05319137.1| NADH dehydrogenase, B subunit [Neisseria sicca ATCC 29256]
 gi|261364348|ref|ZP_05977231.1| NADH dehydrogenase, B subunit [Neisseria mucosa ATCC 25996]
 gi|261378539|ref|ZP_05983112.1| NADH dehydrogenase, B subunit [Neisseria cinerea ATCC 14685]
 gi|255048433|gb|EET43897.1| NADH dehydrogenase, B subunit [Neisseria sicca ATCC 29256]
 gi|269145089|gb|EEZ71507.1| NADH dehydrogenase, B subunit [Neisseria cinerea ATCC 14685]
 gi|288567612|gb|EFC89172.1| NADH dehydrogenase, B subunit [Neisseria mucosa ATCC 25996]
          Length = 160

 Score =  239 bits (610), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 109/151 (72%), Positives = 128/151 (84%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           +  KGF+ TS D ++ + RTGSL  +TFGLACCAVEMM A M RYDL+RFG   R SPRQ
Sbjct: 6   VLKKGFITTSADTVLNYMRTGSLWPVTFGLACCAVEMMHAGMARYDLDRFGIIFRPSPRQ 65

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           +D+MIVAGTLTNKMA ALRRVYDQ+ EPR+V+SMGSCANGGGYYHYSYSVVRG DR+VPV
Sbjct: 66  ADLMIVAGTLTNKMAPALRRVYDQLAEPRWVLSMGSCANGGGYYHYSYSVVRGADRVVPV 125

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           D+YVPGCPPTAEALIYG++ LQ+KI+R   +
Sbjct: 126 DVYVPGCPPTAEALIYGLMQLQQKIKRTSTI 156


>gi|218528065|sp|Q4UWB7|NUOB_XANC8 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|218528066|sp|B0RR99|NUOB_XANCB RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|218528067|sp|Q8P7T3|NUOB_XANCP RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
          Length = 184

 Score =  239 bits (610), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 120/184 (65%), Positives = 141/184 (76%), Gaps = 3/184 (1%)

Query: 1   MGLT-TVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMT 59
           MG+  T+++ + +      +E  D       + +  KG++ TSVD L+ WARTGS+  MT
Sbjct: 1   MGVIQTLDRLMTNPMPEGRVE--DILRPEGENPLLEKGYVTTSVDALLNWARTGSMWPMT 58

Query: 60  FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119
           FGLACCAVEMM A   R DL+R+G   R SPRQSDVMIVAGTL NKMA ALR+VYDQMP+
Sbjct: 59  FGLACCAVEMMHAGAARLDLDRYGVVFRPSPRQSDVMIVAGTLVNKMAPALRKVYDQMPD 118

Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           P++VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQKKI R
Sbjct: 119 PKWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALVYGILQLQKKIWR 178

Query: 180 VGNV 183
              +
Sbjct: 179 TQTI 182


>gi|91789115|ref|YP_550067.1| NADH dehydrogenase subunit B [Polaromonas sp. JS666]
 gi|123164659|sp|Q127X3|NUOB_POLSJ RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|91698340|gb|ABE45169.1| NADH dehydrogenase subunit B [Polaromonas sp. JS666]
          Length = 159

 Score =  239 bits (610), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 111/149 (74%), Positives = 127/149 (85%)

Query: 35  HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSD 94
           ++GF+ TS D +V WA+TGSL  MTFGLACCAVEMM A   RYD++RFG   R SPRQSD
Sbjct: 8   NEGFMTTSYDSVVNWAKTGSLWPMTFGLACCAVEMMHAGAARYDMDRFGMLFRPSPRQSD 67

Query: 95  VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154
           +MIVAGTL NKM  ALR+VYDQM EPR+V+SMGSCANGGGYYHYSYSVVRGCDRIVPVD+
Sbjct: 68  LMIVAGTLCNKMGPALRKVYDQMSEPRWVLSMGSCANGGGYYHYSYSVVRGCDRIVPVDV 127

Query: 155 YVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           YVPGCPPTAEAL+YGI+ LQ+KIRR   +
Sbjct: 128 YVPGCPPTAEALLYGIIQLQQKIRRTNTI 156


>gi|73666917|ref|YP_302933.1| NADH dehydrogenase subunit B [Ehrlichia canis str. Jake]
 gi|72394058|gb|AAZ68335.1| NADH dehydrogenase subunit B [Ehrlichia canis str. Jake]
          Length = 185

 Score =  239 bits (610), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 115/150 (76%), Positives = 126/150 (84%), Gaps = 4/150 (2%)

Query: 34  THKGFLVTSVDQLV----TWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS 89
            H+GF+VT    L+     WAR+ SL  MTFGLACCAVEMM  +  RYDL+R+G   RAS
Sbjct: 21  NHQGFMVTQFSDLIDYISNWARSNSLWPMTFGLACCAVEMMHTAASRYDLDRYGIMFRAS 80

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQ+DVMIVAGTLTNKMA ALR+VYDQM EPRYVISMGSCANGGGYYHYSYSVVRGCDRI
Sbjct: 81  PRQADVMIVAGTLTNKMAPALRKVYDQMTEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 140

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           VPVDIYVPGCPPTAEAL+YGIL LQ+KI R
Sbjct: 141 VPVDIYVPGCPPTAEALLYGILCLQQKINR 170


>gi|15676166|ref|NP_273298.1| NADH dehydrogenase subunit B [Neisseria meningitidis MC58]
 gi|121634114|ref|YP_974359.1| NADH dehydrogenase subunit B [Neisseria meningitidis FAM18]
 gi|194099646|ref|YP_002002777.1| NADH dehydrogenase subunit B [Neisseria gonorrhoeae NCCP11945]
 gi|225077017|ref|ZP_03720216.1| hypothetical protein NEIFLAOT_02069 [Neisseria flavescens
           NRL30031/H210]
 gi|239999843|ref|ZP_04719767.1| NADH dehydrogenase subunit B [Neisseria gonorrhoeae 35/02]
 gi|240015002|ref|ZP_04721915.1| NADH dehydrogenase subunit B [Neisseria gonorrhoeae DGI18]
 gi|240081589|ref|ZP_04726132.1| NADH dehydrogenase subunit B [Neisseria gonorrhoeae FA19]
 gi|240113871|ref|ZP_04728361.1| NADH dehydrogenase subunit B [Neisseria gonorrhoeae MS11]
 gi|240116602|ref|ZP_04730664.1| NADH dehydrogenase subunit B [Neisseria gonorrhoeae PID18]
 gi|240118826|ref|ZP_04732888.1| NADH dehydrogenase subunit B [Neisseria gonorrhoeae PID1]
 gi|240122071|ref|ZP_04735033.1| NADH dehydrogenase subunit B [Neisseria gonorrhoeae PID24-1]
 gi|240124365|ref|ZP_04737321.1| NADH dehydrogenase subunit B [Neisseria gonorrhoeae PID332]
 gi|240126577|ref|ZP_04739463.1| NADH dehydrogenase subunit B [Neisseria gonorrhoeae SK-92-679]
 gi|241760743|ref|ZP_04758835.1| NADH-quinone oxidoreductase, b subunit [Neisseria flavescens SK114]
 gi|254494626|ref|ZP_05107797.1| NADH dehydrogenase subunit I B [Neisseria gonorrhoeae 1291]
 gi|254805716|ref|YP_003083937.1| NADH dehydrogenase I chain B [Neisseria meningitidis alpha14]
 gi|260439637|ref|ZP_05793453.1| NADH dehydrogenase subunit B [Neisseria gonorrhoeae DGI2]
 gi|261379579|ref|ZP_05984152.1| NADH dehydrogenase, B subunit [Neisseria subflava NJ9703]
 gi|261400470|ref|ZP_05986595.1| NADH dehydrogenase, B subunit [Neisseria lactamica ATCC 23970]
 gi|268595653|ref|ZP_06129820.1| NADH-quinone oxidoreductase subunit B [Neisseria gonorrhoeae 35/02]
 gi|268597685|ref|ZP_06131852.1| NADH-quinone oxidoreductase subunit B [Neisseria gonorrhoeae FA19]
 gi|268599937|ref|ZP_06134104.1| NADH dehydrogenase subunit I B [Neisseria gonorrhoeae MS11]
 gi|268602271|ref|ZP_06136438.1| NADH dehydrogenase subunit I B [Neisseria gonorrhoeae PID18]
 gi|268604537|ref|ZP_06138704.1| NADH dehydrogenase subunit I B [Neisseria gonorrhoeae PID1]
 gi|268682992|ref|ZP_06149854.1| NADH dehydrogenase subunit I B [Neisseria gonorrhoeae PID332]
 gi|268685157|ref|ZP_06152019.1| NADH dehydrogenase subunit I B [Neisseria gonorrhoeae SK-92-679]
 gi|296313746|ref|ZP_06863687.1| NADH dehydrogenase, B subunit [Neisseria polysaccharea ATCC 43768]
 gi|304389067|ref|ZP_07371111.1| NADH-quinone oxidoreductase subunit B [Neisseria meningitidis ATCC
           13091]
 gi|313669285|ref|YP_004049569.1| NADH dehydrogenase I chain B [Neisseria lactamica ST-640]
 gi|319638815|ref|ZP_07993573.1| NADH dehydrogenase subunit I B [Neisseria mucosa C102]
 gi|81785111|sp|Q9K1C2|NUOB_NEIMB RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|218527996|sp|B4RPI3|NUOB_NEIG2 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|218527998|sp|A1KRS3|NUOB_NEIMF RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|7225464|gb|AAF40696.1| NADH dehydrogenase I, B subunit [Neisseria meningitidis MC58]
 gi|120865820|emb|CAM09552.1| NADH dehydrogenase I chain B [Neisseria meningitidis FAM18]
 gi|193934936|gb|ACF30760.1| NADH dehydrogenase I, B subunit [Neisseria gonorrhoeae NCCP11945]
 gi|224951574|gb|EEG32783.1| hypothetical protein NEIFLAOT_02069 [Neisseria flavescens
           NRL30031/H210]
 gi|226513666|gb|EEH63011.1| NADH dehydrogenase subunit I B [Neisseria gonorrhoeae 1291]
 gi|241318924|gb|EER55450.1| NADH-quinone oxidoreductase, b subunit [Neisseria flavescens SK114]
 gi|254669258|emb|CBA08154.1| NADH dehydrogenase I chain B [Neisseria meningitidis alpha14]
 gi|261391774|emb|CAX49229.1| NADH-quinone oxidoreductase chain B (NADH dehydrogenase I, chain B;
           NDH-1, chain B) [Neisseria meningitidis 8013]
 gi|268549042|gb|EEZ44460.1| NADH-quinone oxidoreductase subunit B [Neisseria gonorrhoeae 35/02]
 gi|268551473|gb|EEZ46492.1| NADH-quinone oxidoreductase subunit B [Neisseria gonorrhoeae FA19]
 gi|268584068|gb|EEZ48744.1| NADH dehydrogenase subunit I B [Neisseria gonorrhoeae MS11]
 gi|268586402|gb|EEZ51078.1| NADH dehydrogenase subunit I B [Neisseria gonorrhoeae PID18]
 gi|268588668|gb|EEZ53344.1| NADH dehydrogenase subunit I B [Neisseria gonorrhoeae PID1]
 gi|268623276|gb|EEZ55676.1| NADH dehydrogenase subunit I B [Neisseria gonorrhoeae PID332]
 gi|268625441|gb|EEZ57841.1| NADH dehydrogenase subunit I B [Neisseria gonorrhoeae SK-92-679]
 gi|269209729|gb|EEZ76184.1| NADH dehydrogenase, B subunit [Neisseria lactamica ATCC 23970]
 gi|284798053|gb|EFC53400.1| NADH dehydrogenase, B subunit [Neisseria subflava NJ9703]
 gi|296839669|gb|EFH23607.1| NADH dehydrogenase, B subunit [Neisseria polysaccharea ATCC 43768]
 gi|304336940|gb|EFM03130.1| NADH-quinone oxidoreductase subunit B [Neisseria meningitidis ATCC
           13091]
 gi|308388462|gb|ADO30782.1| NADH dehydrogenase I chain B [Neisseria meningitidis alpha710]
 gi|309379802|emb|CBX21578.1| unnamed protein product [Neisseria lactamica Y92-1009]
 gi|313006747|emb|CBN88217.1| NADH dehydrogenase I chain B [Neisseria lactamica 020-06]
 gi|316985170|gb|EFV64122.1| NADH-quinone oxidoreductase, B subunit [Neisseria meningitidis
           H44/76]
 gi|317165131|gb|ADV08672.1| NADH dehydrogenase subunit B [Neisseria gonorrhoeae TCDC-NG08107]
 gi|317399719|gb|EFV80382.1| NADH dehydrogenase subunit I B [Neisseria mucosa C102]
 gi|319411275|emb|CBY91682.1| NADH-quinone oxidoreductase chain B (NADH dehydrogenase I, chain B;
           NDH-1, chain B) [Neisseria meningitidis WUE 2594]
 gi|325129040|gb|EGC51890.1| NADH:ubiquinone dehydrogenase, B subunit [Neisseria meningitidis
           N1568]
 gi|325130970|gb|EGC53697.1| NADH:ubiquinone dehydrogenase, B subunit [Neisseria meningitidis
           OX99.30304]
 gi|325131612|gb|EGC54319.1| NADH:ubiquinone dehydrogenase, B subunit [Neisseria meningitidis
           M6190]
 gi|325135045|gb|EGC57673.1| NADH:ubiquinone dehydrogenase, B subunit [Neisseria meningitidis
           M13399]
 gi|325137069|gb|EGC59665.1| NADH:ubiquinone dehydrogenase, B subunit [Neisseria meningitidis
           M0579]
 gi|325139133|gb|EGC61679.1| NADH:ubiquinone dehydrogenase, B subunit [Neisseria meningitidis
           ES14902]
 gi|325141078|gb|EGC63581.1| NADH:ubiquinone dehydrogenase, B subunit [Neisseria meningitidis
           CU385]
 gi|325143083|gb|EGC65430.1| NADH:ubiquinone dehydrogenase, B subunit [Neisseria meningitidis
           961-5945]
 gi|325143153|gb|EGC65499.1| NADH:ubiquinone dehydrogenase, B subunit [Neisseria meningitidis
           961-5945]
 gi|325145306|gb|EGC67584.1| NADH:ubiquinone dehydrogenase, B subunit [Neisseria meningitidis
           M01-240013]
 gi|325197528|gb|ADY92984.1| NADH:ubiquinone dehydrogenase, B subunit [Neisseria meningitidis
           G2136]
 gi|325199445|gb|ADY94900.1| NADH:ubiquinone dehydrogenase, B subunit [Neisseria meningitidis
           H44/76]
 gi|325202929|gb|ADY98383.1| NADH:ubiquinone dehydrogenase, B subunit [Neisseria meningitidis
           M01-240149]
 gi|325203359|gb|ADY98812.1| NADH:ubiquinone dehydrogenase, B subunit [Neisseria meningitidis
           M01-240355]
 gi|325205327|gb|ADZ00780.1| NADH:ubiquinone dehydrogenase, B subunit [Neisseria meningitidis
           M04-240196]
 gi|325207273|gb|ADZ02725.1| NADH:ubiquinone dehydrogenase, B subunit [Neisseria meningitidis
           NZ-05/33]
          Length = 160

 Score =  239 bits (610), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 109/151 (72%), Positives = 128/151 (84%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           +  KGF+ TS D ++ + RTGSL  +TFGLACCAVEMM A M RYDL+RFG   R SPRQ
Sbjct: 6   VLKKGFITTSADTVLNYMRTGSLWPVTFGLACCAVEMMHAGMARYDLDRFGIIFRPSPRQ 65

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           +D+MIVAGTLTNKMA ALRRVYDQ+ EPR+V+SMGSCANGGGYYHYSYSVVRG DR+VPV
Sbjct: 66  ADLMIVAGTLTNKMAPALRRVYDQLAEPRWVLSMGSCANGGGYYHYSYSVVRGADRVVPV 125

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           D+YVPGCPPTAEALIYG++ LQ+KI+R   +
Sbjct: 126 DVYVPGCPPTAEALIYGLIQLQQKIKRTSTI 156


>gi|303324039|ref|XP_003072007.1| NADH-ubiquinone oxidoreductase, putative [Coccidioides posadasii
           C735 delta SOWgp]
 gi|240111717|gb|EER29862.1| NADH-ubiquinone oxidoreductase, putative [Coccidioides posadasii
           C735 delta SOWgp]
          Length = 213

 Score =  239 bits (610), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 107/181 (59%), Positives = 136/181 (75%), Gaps = 4/181 (2%)

Query: 4   TTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLA 63
           T + ++  S  +  +L+ V  D    + +       +T+ D LV WAR GSL  ++FGLA
Sbjct: 32  TYIQRQPSSTWNGNALKPVKPD----AEKGAPLQHFLTTTDNLVNWARQGSLWPLSFGLA 87

Query: 64  CCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYV 123
           CC +EMM ASMPRYD +R G   RASPRQ+DVM+VAGT+TNKMA ALR +YDQMP+P++V
Sbjct: 88  CCGLEMMSASMPRYDQDRLGIIFRASPRQADVMLVAGTVTNKMAPALRLLYDQMPDPKWV 147

Query: 124 ISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           ISMGSCANGGGYYHYSYSV+RG DRI+PVDIYVPGCPPT EAL+YG+ LLQK++R+    
Sbjct: 148 ISMGSCANGGGYYHYSYSVLRGVDRIIPVDIYVPGCPPTPEALLYGVFLLQKRMRKTRIT 207

Query: 184 K 184
           +
Sbjct: 208 R 208


>gi|320036960|gb|EFW18898.1| NADH-ubiquinone oxidoreductase 20 kDa subunit [Coccidioides
           posadasii str. Silveira]
          Length = 213

 Score =  239 bits (610), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 107/181 (59%), Positives = 136/181 (75%), Gaps = 4/181 (2%)

Query: 4   TTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLA 63
           T + ++  S  +  +L+ V  D    + +       +T+ D LV WAR GSL  ++FGLA
Sbjct: 32  TYIQRQPSSTWNGNALKPVKPD----AEKGAPLQHFLTTTDNLVNWARQGSLWPLSFGLA 87

Query: 64  CCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYV 123
           CC +EMM ASMPRYD +R G   RASPRQ+DVM+VAGT+TNKMA ALR +YDQMP+P++V
Sbjct: 88  CCGLEMMSASMPRYDQDRLGIIFRASPRQADVMLVAGTVTNKMAPALRLLYDQMPDPKWV 147

Query: 124 ISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           ISMGSCANGGGYYHYSYSV+RG DRI+PVDIYVPGCPPT EAL+YG+ LLQK++R+    
Sbjct: 148 ISMGSCANGGGYYHYSYSVLRGVDRIIPVDIYVPGCPPTPEALLYGVFLLQKRMRKTRIT 207

Query: 184 K 184
           +
Sbjct: 208 R 208


>gi|188577695|ref|YP_001914624.1| NADH dehydrogenase subunit B [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|238065244|sp|B2SVL8|NUOB_XANOP RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|188522147|gb|ACD60092.1| NADH-ubiquinone oxidoreductase 20 kda subunit [Xanthomonas oryzae
           pv. oryzae PXO99A]
          Length = 182

 Score =  239 bits (610), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 118/181 (65%), Positives = 139/181 (76%), Gaps = 2/181 (1%)

Query: 3   LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62
           + T+++ + +      +E  D       + +  KG++ TSVD L+ WARTGS+  MTFGL
Sbjct: 2   IQTLDRLMTNPMPEGRVE--DILRPEGENPLLEKGYVTTSVDALLNWARTGSMWPMTFGL 59

Query: 63  ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122
           ACCAVEMM A   R DL+R+G   R SPRQSDVMIVAGTL NKMA ALR+VYDQMP+P++
Sbjct: 60  ACCAVEMMHAGASRLDLDRYGVVFRPSPRQSDVMIVAGTLVNKMAPALRKVYDQMPDPKW 119

Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
           VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQKKI R   
Sbjct: 120 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALVYGILQLQKKIWRTQT 179

Query: 183 V 183
           +
Sbjct: 180 I 180


>gi|312211788|emb|CBX91872.1| hypothetical protein [Leptosphaeria maculans]
          Length = 233

 Score =  239 bits (610), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 111/172 (64%), Positives = 126/172 (73%)

Query: 13  GQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQA 72
                   + +        +     + +T++DQ+  WAR  SL  MTFGLACCAVEMM  
Sbjct: 57  APPPMKQARREVPLPSQEGKKGAMQYALTTLDQVANWARQSSLWPMTFGLACCAVEMMHL 116

Query: 73  SMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANG 132
           S PRYD +R G   RASPRQSDVMIVAGTLTNKMA ALR+VYDQMP+PR+VISMGSCANG
Sbjct: 117 STPRYDQDRLGIIFRASPRQSDVMIVAGTLTNKMAPALRQVYDQMPDPRWVISMGSCANG 176

Query: 133 GGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           GGYYHYSYSV RGCDRIVPVDIYVPGCPPTAEAL+YGI  LQKK+R     +
Sbjct: 177 GGYYHYSYSVTRGCDRIVPVDIYVPGCPPTAEALMYGIFQLQKKMRHTKITR 228


>gi|170092259|ref|XP_001877351.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164647210|gb|EDR11454.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 191

 Score =  239 bits (610), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 112/183 (61%), Positives = 135/183 (73%), Gaps = 6/183 (3%)

Query: 6   VNQKIISGQSSCSLEKVDADFSR------ISSEITHKGFLVTSVDQLVTWARTGSLMWMT 59
             Q+ ++   +   E V     R      +        ++++++D++  WAR GS+  MT
Sbjct: 2   AEQQPVAPPPTSPTEPVTLLAQRGSLQLSLEQPQNGAEYVLSTLDKVTNWARQGSMWPMT 61

Query: 60  FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119
           FGLACCAVEMM  +  RYD +R G   RASPRQSD+MIVAGTLTNKMA ALR+VYDQMPE
Sbjct: 62  FGLACCAVEMMHMAAARYDQDRLGVVFRASPRQSDIMIVAGTLTNKMAPALRKVYDQMPE 121

Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           PR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG+L LQ+K+RR
Sbjct: 122 PRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGMLQLQRKMRR 181

Query: 180 VGN 182
              
Sbjct: 182 SRK 184


>gi|88658003|ref|YP_507585.1| NADH dehydrogenase subunit B [Ehrlichia chaffeensis str. Arkansas]
 gi|123493072|sp|Q2GG48|NUOB_EHRCR RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|88599460|gb|ABD44929.1| NADH dehydrogenase I, B subunit [Ehrlichia chaffeensis str.
           Arkansas]
          Length = 179

 Score =  239 bits (610), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 116/169 (68%), Positives = 131/169 (77%), Gaps = 5/169 (2%)

Query: 19  LEKVDADFS-RISSEITHKGFLVTSVDQLVT----WARTGSLMWMTFGLACCAVEMMQAS 73
           + K D+  + +      H+GF+VT    L+     WAR+ SL  MTFGLACCAVEMM  +
Sbjct: 2   INKNDSVLNNQFWQSYNHQGFMVTQFSDLINYISNWARSNSLWPMTFGLACCAVEMMHTA 61

Query: 74  MPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGG 133
             RYDL+R+G   RASPRQ+DVMIVAGTLTNKMA ALR+VYDQM EPRYVISMGSCANGG
Sbjct: 62  ASRYDLDRYGVMFRASPRQADVMIVAGTLTNKMAPALRKVYDQMTEPRYVISMGSCANGG 121

Query: 134 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
           GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGI  LQ+KI R   
Sbjct: 122 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGIFCLQQKINRGNT 170


>gi|329118899|ref|ZP_08247594.1| NADH-quinone oxidoreductase subunit B [Neisseria bacilliformis ATCC
           BAA-1200]
 gi|327464927|gb|EGF11217.1| NADH-quinone oxidoreductase subunit B [Neisseria bacilliformis ATCC
           BAA-1200]
          Length = 159

 Score =  239 bits (609), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 111/151 (73%), Positives = 129/151 (85%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           + +KGF+ TS D ++ + RTGSL  +TFGLACCAVEMM A M RYDL+RFG   R SPRQ
Sbjct: 6   VLNKGFITTSADTVLNYMRTGSLWPVTFGLACCAVEMMHAGMARYDLDRFGIIFRPSPRQ 65

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           SD+MIVAGTLTNKMA ALRRVYDQM EPR+V+SMGSCANGGGYYHYSYSVVRGCDR+VPV
Sbjct: 66  SDLMIVAGTLTNKMAPALRRVYDQMAEPRWVLSMGSCANGGGYYHYSYSVVRGCDRVVPV 125

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           D+YVPGCPPTAEAL+YG++ LQ KI+R   +
Sbjct: 126 DVYVPGCPPTAEALLYGLIQLQGKIKRTYTI 156


>gi|289614329|emb|CBI58839.1| unnamed protein product [Sordaria macrospora]
          Length = 230

 Score =  239 bits (609), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 110/165 (66%), Positives = 128/165 (77%)

Query: 20  EKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDL 79
           E+ +   +          + +T++D +V WAR  SL  MTFGLACCAVEMM  S PRYD 
Sbjct: 61  ERREVPLASQEGTKGAVQYALTTLDSIVNWARQSSLWPMTFGLACCAVEMMHLSTPRYDQ 120

Query: 80  ERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS 139
           +R G   RASPRQSDVMIVAGTLTNKMA ALR+VYDQMP+PR+VISMGSCANGGGYYHYS
Sbjct: 121 DRLGIIFRASPRQSDVMIVAGTLTNKMAPALRQVYDQMPDPRWVISMGSCANGGGYYHYS 180

Query: 140 YSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           YSVVRGCDRIVPVD+YVPGCPPT+EAL+YGI  LQ+K+R     +
Sbjct: 181 YSVVRGCDRIVPVDVYVPGCPPTSEALMYGIFQLQRKMRNTKITR 225


>gi|121998543|ref|YP_001003330.1| NADH-quinone oxidoreductase subunit B [Halorhodospira halophila
           SL1]
 gi|238065156|sp|A1WXW6|NUOB_HALHL RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|121589948|gb|ABM62528.1| NADH dehydrogenase subunit B [Halorhodospira halophila SL1]
          Length = 158

 Score =  239 bits (609), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 114/151 (75%), Positives = 126/151 (83%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           I  +G++ TS D+L+ WARTGSL  MTFGLACCAVEMM  +  RYD++R G   R SPRQ
Sbjct: 6   ILERGYVTTSADKLINWARTGSLWPMTFGLACCAVEMMHTAAGRYDMDRNGLIFRPSPRQ 65

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           SDVMIVAGTL NKMA ALR+VYDQMPEP++VISMGSCANGGGYYHYSYSV RGCDRIVPV
Sbjct: 66  SDVMIVAGTLCNKMAPALRKVYDQMPEPKWVISMGSCANGGGYYHYSYSVTRGCDRIVPV 125

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           DIYVPGCPPTAEAL YGIL LQ KIRR   +
Sbjct: 126 DIYVPGCPPTAEALYYGILQLQNKIRRTNTI 156


>gi|190571252|ref|YP_001975610.1| NADH dehydrogenase I, B subunit [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|213018650|ref|ZP_03334458.1| NADH dehydrogenase I, B subunit [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
 gi|218528013|sp|B3CM42|NUOB_WOLPP RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|190357524|emb|CAQ54961.1| NADH dehydrogenase I, B subunit [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|212995601|gb|EEB56241.1| NADH dehydrogenase I, B subunit [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
          Length = 167

 Score =  238 bits (608), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 111/153 (72%), Positives = 131/153 (85%), Gaps = 4/153 (2%)

Query: 35  HKGFLVTS----VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP 90
            +GFL+T     +D ++ WAR+GSL  MTFGLACCAVEMM  +  RYDL+R+G   RASP
Sbjct: 15  KEGFLITKFGDLIDYIMNWARSGSLWPMTFGLACCAVEMMHTASSRYDLDRYGIIFRASP 74

Query: 91  RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150
           RQ+DVMIVAGTLTNKMA+ALR+VYDQM +P+YV+SMGSCANGGGYYHYSYSVVRGCDRIV
Sbjct: 75  RQADVMIVAGTLTNKMAAALRKVYDQMADPKYVVSMGSCANGGGYYHYSYSVVRGCDRIV 134

Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           PVD+YVPGCPPTAEAL+YG+L LQ KI+R  N+
Sbjct: 135 PVDVYVPGCPPTAEALLYGMLCLQNKIKRTKNI 167


>gi|59802071|ref|YP_208783.1| NADH dehydrogenase subunit B [Neisseria gonorrhoeae FA 1090]
 gi|240017450|ref|ZP_04723990.1| NADH dehydrogenase subunit B [Neisseria gonorrhoeae FA6140]
 gi|240129042|ref|ZP_04741703.1| NADH dehydrogenase subunit B [Neisseria gonorrhoeae SK-93-1035]
 gi|268687420|ref|ZP_06154282.1| NADH dehydrogenase subunit I B [Neisseria gonorrhoeae SK-93-1035]
 gi|293398111|ref|ZP_06642316.1| NADH-quinone oxidoreductase subunit B [Neisseria gonorrhoeae F62]
 gi|75355476|sp|Q5F616|NUOB_NEIG1 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|59718966|gb|AAW90371.1| putative NADH dehydrogenase I chain B [Neisseria gonorrhoeae FA
           1090]
 gi|268627704|gb|EEZ60104.1| NADH dehydrogenase subunit I B [Neisseria gonorrhoeae SK-93-1035]
 gi|291611374|gb|EFF40444.1| NADH-quinone oxidoreductase subunit B [Neisseria gonorrhoeae F62]
          Length = 160

 Score =  238 bits (608), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 109/151 (72%), Positives = 127/151 (84%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           +  KGF+ TS D ++   RTGSL  +TFGLACCAVEMM A M RYDL+RFG   R SPRQ
Sbjct: 6   VLKKGFITTSADTVLNHMRTGSLWPVTFGLACCAVEMMHAGMARYDLDRFGIIFRPSPRQ 65

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           +D+MIVAGTLTNKMA ALRRVYDQ+ EPR+V+SMGSCANGGGYYHYSYSVVRG DR+VPV
Sbjct: 66  ADLMIVAGTLTNKMAPALRRVYDQLAEPRWVLSMGSCANGGGYYHYSYSVVRGADRVVPV 125

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           D+YVPGCPPTAEALIYG++ LQ+KI+R   +
Sbjct: 126 DVYVPGCPPTAEALIYGLIQLQQKIKRTSTI 156


>gi|319779199|ref|YP_004130112.1| NADH-ubiquinone oxidoreductase chain B [Taylorella equigenitalis
           MCE9]
 gi|317109223|gb|ADU91969.1| NADH-ubiquinone oxidoreductase chain B [Taylorella equigenitalis
           MCE9]
          Length = 159

 Score =  238 bits (608), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 114/155 (73%), Positives = 130/155 (83%)

Query: 29  ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88
           +S    +KGFLVTS D ++ W RTGS+  +TFGLACCAVEMM A   RYDL++FG   R 
Sbjct: 1   MSDTSNNKGFLVTSTDSVLHWLRTGSMWPVTFGLACCAVEMMHAGAARYDLDQFGIIFRP 60

Query: 89  SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 148
           SPRQSD+MIVAGTLTNKMA ALR+VYDQM EPR+V+SMGSCANGGGYYHYSY+VVRGCDR
Sbjct: 61  SPRQSDIMIVAGTLTNKMAPALRKVYDQMAEPRWVVSMGSCANGGGYYHYSYAVVRGCDR 120

Query: 149 IVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           IVPVDIYVPGCPPTAEALIYG+L LQ K+RR   +
Sbjct: 121 IVPVDIYVPGCPPTAEALIYGMLQLQNKMRRTLTI 155


>gi|322694377|gb|EFY86208.1| mitochondrial NADH-ubiquinone oxidoreductase 20 kD subunit
           [Metarhizium acridum CQMa 102]
          Length = 367

 Score =  238 bits (608), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 113/159 (71%), Positives = 128/159 (80%), Gaps = 3/159 (1%)

Query: 29  ISSEITHKGFL---VTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA 85
           + SE   KG +   +T++D +  WAR  SL  MTFGLACCAVEMM  S PRYD +R G  
Sbjct: 204 LPSEEGTKGVVQYALTTLDVIANWARQSSLWPMTFGLACCAVEMMHLSTPRYDQDRLGII 263

Query: 86  PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRG 145
            RASPRQSDVMIVAGTLTNKMA ALR+VYDQMP+PR+VISMGSCANGGGYYHYSYSVVRG
Sbjct: 264 FRASPRQSDVMIVAGTLTNKMAPALRQVYDQMPDPRWVISMGSCANGGGYYHYSYSVVRG 323

Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           CDRIVPVDIYVPGCPPT+EAL+YGI  LQ+K+R     +
Sbjct: 324 CDRIVPVDIYVPGCPPTSEALMYGIFQLQRKMRNTKITR 362


>gi|238023160|ref|ZP_04603586.1| hypothetical protein GCWU000324_03086 [Kingella oralis ATCC 51147]
 gi|237865543|gb|EEP66683.1| hypothetical protein GCWU000324_03086 [Kingella oralis ATCC 51147]
          Length = 159

 Score =  238 bits (608), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 108/151 (71%), Positives = 127/151 (84%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           + +KGF+  S D ++ + RTGSL  +TFGLACCAVEMM A M RYDL+RFG   R SPRQ
Sbjct: 6   VLNKGFVTASADTVLNYVRTGSLWPVTFGLACCAVEMMHAGMARYDLDRFGIIFRPSPRQ 65

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           +D+MIVAGTLTNKMA ALRRVYDQM EPR+V+SMGSCANGGGYYHYSYSVVRG DR+VPV
Sbjct: 66  ADLMIVAGTLTNKMAPALRRVYDQMAEPRWVLSMGSCANGGGYYHYSYSVVRGADRVVPV 125

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           D+YVPGCPPTAEAL+YG++ LQ KI+R   +
Sbjct: 126 DVYVPGCPPTAEALLYGLIQLQGKIKRTYTI 156


>gi|58584500|ref|YP_198073.1| NADH dehydrogenase subunit B [Wolbachia endosymbiont strain TRS of
           Brugia malayi]
 gi|75497991|sp|Q5GT43|NUOB_WOLTR RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|58418816|gb|AAW70831.1| NADH:ubiquinone oxidoreductase chain B [Wolbachia endosymbiont
           strain TRS of Brugia malayi]
          Length = 168

 Score =  238 bits (608), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 113/153 (73%), Positives = 131/153 (85%), Gaps = 4/153 (2%)

Query: 35  HKGFLVTS----VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP 90
            +GFLVT     +D ++ WAR+GSL  MTFGLACCAVEMM  +  RYDL+R+G   RASP
Sbjct: 16  KEGFLVTKFGSLIDYVINWARSGSLWPMTFGLACCAVEMMHTASSRYDLDRYGIMFRASP 75

Query: 91  RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150
           RQ+DVMIVAGTLTNKMA+ALR+VYDQM +P+YV+SMGSCANGGGYYHYSYSVVRGCDRIV
Sbjct: 76  RQADVMIVAGTLTNKMAAALRKVYDQMADPKYVVSMGSCANGGGYYHYSYSVVRGCDRIV 135

Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           PVDIYVPGCPPTAEAL+YG+L LQ KI+R  N+
Sbjct: 136 PVDIYVPGCPPTAEALLYGMLCLQNKIKRTQNI 168


>gi|163855988|ref|YP_001630286.1| NADH dehydrogenase subunit B [Bordetella petrii DSM 12804]
 gi|163259716|emb|CAP42017.1| NADH-ubiquinone oxidoreductase, 20 kDa subunit, chain B [Bordetella
           petrii]
          Length = 178

 Score =  238 bits (607), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 110/151 (72%), Positives = 127/151 (84%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           I  +GF+ TS D+ + WA+TGS+  MTFGLACCAVEMM A   RYDL++FG   R SPRQ
Sbjct: 26  ILKQGFITTSADKFLNWAKTGSMWPMTFGLACCAVEMMHAGAARYDLDQFGIIFRPSPRQ 85

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           SD+MIVAGTL NKMA ALR+VYDQMPEPR+V+SMGSCANGGGYYHYSYSVVRGCDRIVPV
Sbjct: 86  SDLMIVAGTLCNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIVPV 145

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           D+YVPGCPPTAEAL+YG+L +Q KIR    +
Sbjct: 146 DVYVPGCPPTAEALVYGLLQMQNKIRLTNTI 176


>gi|325915540|ref|ZP_08177851.1| NADH dehydrogenase subunit B [Xanthomonas vesicatoria ATCC 35937]
 gi|325538256|gb|EGD09941.1| NADH dehydrogenase subunit B [Xanthomonas vesicatoria ATCC 35937]
          Length = 182

 Score =  238 bits (607), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 118/181 (65%), Positives = 139/181 (76%), Gaps = 2/181 (1%)

Query: 3   LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62
           + T+++ + +      +E  D       + +  KG++ TSVD L+ WARTGS+  MTFGL
Sbjct: 2   IQTLDRLMTNPMPEGRVE--DILRPDGENPLLEKGYVTTSVDALLNWARTGSMWPMTFGL 59

Query: 63  ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122
           ACCAVEMM A   R DL+R+G   R SPRQSDVMIVAGTL NKMA ALR+VYDQMP+P++
Sbjct: 60  ACCAVEMMHAGASRLDLDRYGVVFRPSPRQSDVMIVAGTLVNKMAPALRKVYDQMPDPKW 119

Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
           VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQKKI R   
Sbjct: 120 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALVYGILQLQKKIWRTQT 179

Query: 183 V 183
           +
Sbjct: 180 I 180


>gi|225024124|ref|ZP_03713316.1| hypothetical protein EIKCOROL_00992 [Eikenella corrodens ATCC
           23834]
 gi|294669093|ref|ZP_06734179.1| NADH dehydrogenase, B subunit [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|224943149|gb|EEG24358.1| hypothetical protein EIKCOROL_00992 [Eikenella corrodens ATCC
           23834]
 gi|291309085|gb|EFE50328.1| NADH dehydrogenase, B subunit [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 159

 Score =  238 bits (607), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 112/151 (74%), Positives = 128/151 (84%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           I +KGF+  S D ++ + RTGSL  +TFGLACCAVEMM A M RYDL+RFG   R SPRQ
Sbjct: 6   ILNKGFITASADTVLNYVRTGSLWPVTFGLACCAVEMMHAGMARYDLDRFGIIFRPSPRQ 65

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           SD+MIVAGTLTNKMA ALRRVYDQM EPR+V+SMGSCANGGGYYHYSYSVVRGCDR+VPV
Sbjct: 66  SDLMIVAGTLTNKMAPALRRVYDQMAEPRWVLSMGSCANGGGYYHYSYSVVRGCDRVVPV 125

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           D+YVPGCPPTAEALIYG++ LQ KI+R   +
Sbjct: 126 DVYVPGCPPTAEALIYGLIQLQGKIKRTYTI 156


>gi|296811983|ref|XP_002846329.1| NADH:ubiquinone oxidoreductase kD subunit [Arthroderma otae CBS
           113480]
 gi|238841585|gb|EEQ31247.1| NADH:ubiquinone oxidoreductase kD subunit [Arthroderma otae CBS
           113480]
          Length = 197

 Score =  238 bits (607), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 101/168 (60%), Positives = 126/168 (75%)

Query: 17  CSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPR 76
              ++++        E      ++T  DQ+  WAR GSL  +TFGLACC VEMM  SMPR
Sbjct: 25  PRPKRLEVPLPSQGEEPVPLRHVLTKFDQIANWARQGSLWPLTFGLACCGVEMMAVSMPR 84

Query: 77  YDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY 136
           YDL+R G   RASPRQ+DV+IV+GT+TNKM  A+R +YDQMP+P++VISMGSCANGGGYY
Sbjct: 85  YDLDRMGIFYRASPRQADVLIVSGTVTNKMGPAIRLLYDQMPDPKWVISMGSCANGGGYY 144

Query: 137 HYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           HYSYSVVRG DR++PVD+YVPGCPPTAEA +YG+L LQKKI+     +
Sbjct: 145 HYSYSVVRGVDRLLPVDVYVPGCPPTAEAFLYGVLQLQKKIKNQRTTR 192


>gi|332968234|gb|EGK07311.1| NADH-quinone oxidoreductase subunit B [Kingella kingae ATCC 23330]
          Length = 159

 Score =  238 bits (607), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 109/151 (72%), Positives = 127/151 (84%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           + +KGF+  S D ++ + RTGSL  +TFGLACCAVEMM A M RYDL+RFG   R SPRQ
Sbjct: 6   VLNKGFVTASADTVLNYVRTGSLWPVTFGLACCAVEMMHAGMARYDLDRFGIIFRPSPRQ 65

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           SD+MIVAGTLTNKMA ALRRVYDQM EPR+V+SMGSCANGGGYYHYSYSVVRG DR+VPV
Sbjct: 66  SDLMIVAGTLTNKMAPALRRVYDQMAEPRWVLSMGSCANGGGYYHYSYSVVRGADRVVPV 125

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           D+YVPGCPPTAEAL+YG++ LQ KI+R   +
Sbjct: 126 DVYVPGCPPTAEALLYGLIQLQGKIKRTYTI 156


>gi|317033085|ref|XP_001394844.2| NADH dehydrogenase [ubiquinone] iron-sulfur protein 7 [Aspergillus
           niger CBS 513.88]
          Length = 155

 Score =  238 bits (607), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 106/146 (72%), Positives = 124/146 (84%)

Query: 39  LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIV 98
           ++T+ DQ+V WAR GSL  ++FGLACCA+EMM  SMPRYD +R G   RASPRQSDVMIV
Sbjct: 5   VLTTFDQIVNWARQGSLWPLSFGLACCAIEMMHVSMPRYDQDRLGIIFRASPRQSDVMIV 64

Query: 99  AGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPG 158
           AGT+TNKMA ALR+ YDQMPEPR+VISMGSCANGGGYYHYSYS+VRG DRIVPVD+Y+PG
Sbjct: 65  AGTVTNKMAPALRQCYDQMPEPRWVISMGSCANGGGYYHYSYSIVRGVDRIVPVDVYIPG 124

Query: 159 CPPTAEALIYGILLLQKKIRRVGNVK 184
           CPPTAEA +YG+  LQKKI+R    +
Sbjct: 125 CPPTAEATLYGVFQLQKKIKRTRITR 150


>gi|218767068|ref|YP_002341580.1| NADH dehydrogenase subunit B [Neisseria meningitidis Z2491]
 gi|218527997|sp|A1INN9|NUOB_NEIMA RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|121051076|emb|CAM07346.1| NADH dehydrogenase I chain B [Neisseria meningitidis Z2491]
          Length = 160

 Score =  238 bits (607), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 110/151 (72%), Positives = 129/151 (85%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           +  KGF+ TS D ++ + RTGSL  +TFGLACCAVEMM A M RYDL+RFG   R SPRQ
Sbjct: 6   VLKKGFITTSADTVLNYMRTGSLWPVTFGLACCAVEMMHAGMARYDLDRFGIIFRPSPRQ 65

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           +D+MIVAGTLTNKMASALRRVYDQ+ EPR+V+SMGSCANGGGYYHYSYSVVRG DR+VPV
Sbjct: 66  ADLMIVAGTLTNKMASALRRVYDQLAEPRWVLSMGSCANGGGYYHYSYSVVRGADRVVPV 125

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           D+YVPGCPPTAEALIYG++ LQ+KI+R   +
Sbjct: 126 DVYVPGCPPTAEALIYGLIQLQQKIKRTSTI 156


>gi|325267311|ref|ZP_08133973.1| NADH-quinone oxidoreductase subunit B [Kingella denitrificans ATCC
           33394]
 gi|324981248|gb|EGC16898.1| NADH-quinone oxidoreductase subunit B [Kingella denitrificans ATCC
           33394]
          Length = 159

 Score =  238 bits (607), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 108/151 (71%), Positives = 127/151 (84%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           + +KGF+  S D ++ + RTGSL  +TFGLACCAVEMM A M RYDL+RFG   R SPRQ
Sbjct: 6   VLNKGFVTASADTVLNYVRTGSLWPVTFGLACCAVEMMHAGMARYDLDRFGIIFRPSPRQ 65

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           +D+MIVAGTLTNKMA ALRRVYDQM EPR+V+SMGSCANGGGYYHYSYSVVRG DR+VPV
Sbjct: 66  ADLMIVAGTLTNKMAPALRRVYDQMAEPRWVLSMGSCANGGGYYHYSYSVVRGADRVVPV 125

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           D+YVPGCPPTAEAL+YG++ LQ KI+R   +
Sbjct: 126 DVYVPGCPPTAEALLYGLIQLQGKIKRTCTI 156


>gi|126275592|ref|XP_001386878.1| NADH-ubiquinone oxidoreductase [Scheffersomyces stipitis CBS 6054]
 gi|126212747|gb|EAZ62855.1| NADH-ubiquinone oxidoreductase [Pichia stipitis CBS 6054]
          Length = 207

 Score =  237 bits (606), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 109/169 (64%), Positives = 130/169 (76%), Gaps = 2/169 (1%)

Query: 18  SLEKVDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMP 75
           + + +  DF  +S +       + +TS+D +  WAR  S   +TFGLACCAVEMM  S P
Sbjct: 34  TPKALPTDFPLMSEKTASSPIDYALTSLDSIANWARKSSFWPVTFGLACCAVEMMHVSTP 93

Query: 76  RYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY 135
           RYD +R G   RASPRQSD+MIVAGT+TNKMA ALR+VYDQMP+PR+VISMGSCANGGGY
Sbjct: 94  RYDQDRLGIIFRASPRQSDIMIVAGTVTNKMAPALRQVYDQMPDPRWVISMGSCANGGGY 153

Query: 136 YHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           YHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG+  LQKK+ +    +
Sbjct: 154 YHYSYSVVRGCDRIVPVDIYVPGCPPTAEALMYGVFQLQKKMMKTRITR 202


>gi|317158068|ref|XP_001826792.2| NADH dehydrogenase [ubiquinone] iron-sulfur protein 7 [Aspergillus
           oryzae RIB40]
          Length = 190

 Score =  237 bits (606), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 103/151 (68%), Positives = 121/151 (80%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
                ++T++DQLV WAR  SL  ++FGLACCAVEMMQ SMPRYD +R G   RASPRQS
Sbjct: 35  NKAEHVLTTIDQLVNWARQSSLWPLSFGLACCAVEMMQVSMPRYDQDRLGIIFRASPRQS 94

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD 153
           DVM+VAGT+TNKM  ALR+ YDQMP+P++VISMGSCANGGGYYHYSYSVVRG DRIVPVD
Sbjct: 95  DVMVVAGTVTNKMGPALRQCYDQMPDPKWVISMGSCANGGGYYHYSYSVVRGVDRIVPVD 154

Query: 154 IYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           +Y+PGCPPT EA + GI  LQKK+R     +
Sbjct: 155 VYIPGCPPTPEAFLCGIFQLQKKMRHTKVTR 185


>gi|56421890|ref|YP_149208.1| NADH dehydrogenase subunit B [Geobacillus kaustophilus HTA426]
 gi|261420760|ref|YP_003254442.1| NADH dehydrogenase subunit B [Geobacillus sp. Y412MC61]
 gi|297531555|ref|YP_003672830.1| NADH-quinone oxidoreductase subunit beta [Geobacillus sp. C56-T3]
 gi|319768430|ref|YP_004133931.1| NADH-quinone oxidoreductase, B subunit [Geobacillus sp. Y412MC52]
 gi|81346274|sp|Q5KUJ6|NUOB_GEOKA RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|56381732|dbj|BAD77640.1| NADH:ubiquinone oxidoreductase chain B (Fe-S oxidoreductases)
           [Geobacillus kaustophilus HTA426]
 gi|261377217|gb|ACX79960.1| NADH-quinone oxidoreductase, B subunit [Geobacillus sp. Y412MC61]
 gi|297254807|gb|ADI28253.1| NADH-quinone oxidoreductase, B subunit [Geobacillus sp. C56-T3]
 gi|317113296|gb|ADU95788.1| NADH-quinone oxidoreductase, B subunit [Geobacillus sp. Y412MC52]
          Length = 170

 Score =  237 bits (606), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 93/153 (60%), Positives = 116/153 (75%)

Query: 26  FSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA 85
           FS +  E   +   +T+++QL  WAR+ SL  +TFGLACCA+EMM      YDL+RFG  
Sbjct: 8   FSGVEMEEVKRNVFLTTLEQLKGWARSSSLWPLTFGLACCAIEMMAVGGAHYDLDRFGSF 67

Query: 86  PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRG 145
            RASPRQ+DVMIV+GT+T KMA  LRR+YDQMPEP++VI+MGSCA  GG Y  SYSVV+G
Sbjct: 68  FRASPRQADVMIVSGTVTKKMAPLLRRLYDQMPEPKWVIAMGSCATAGGPYVKSYSVVKG 127

Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
            D+IVPVD+Y+PGCPP   ALIYGI  L++KIR
Sbjct: 128 VDQIVPVDVYIPGCPPNPAALIYGIHKLKEKIR 160


>gi|85085876|ref|XP_957592.1| NADH:ubiquinone oxidoreductase 19.3kD subunit [Neurospora crassa
           OR74A]
 gi|6647651|sp|O47950|NDUS7_NEUCR RecName: Full=NADH-ubiquinone oxidoreductase 19.3 kDa subunit,
           mitochondrial; AltName: Full=Complex I-19.3kD;
           Short=CI-19.3kD; Flags: Precursor
 gi|2764632|emb|CAA04802.1| 19.3kD iron-sulfur subunit of mitochondrial complex I [Neurospora
           crassa]
 gi|28918685|gb|EAA28356.1| NADH:ubiquinone oxidoreductase 19.3kD subunit [Neurospora crassa
           OR74A]
 gi|40882330|emb|CAF06152.1| NADH-ubiquinone oxidoreductase 19.3 kDa subunit, mitochondrial
           precursor [Neurospora crassa]
          Length = 226

 Score =  237 bits (606), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 111/165 (67%), Positives = 127/165 (76%)

Query: 20  EKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDL 79
           E+ +              + +T++D +V WAR  SL  MTFGLACCAVEMM  S PRYD 
Sbjct: 57  ERREVPLPSQEGTKGAVQYALTTLDSIVNWARQSSLWPMTFGLACCAVEMMHLSTPRYDQ 116

Query: 80  ERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS 139
           +R G   RASPRQSDVMIVAGTLTNKMA ALR+VYDQMP+PR+VISMGSCANGGGYYHYS
Sbjct: 117 DRLGIIFRASPRQSDVMIVAGTLTNKMAPALRQVYDQMPDPRWVISMGSCANGGGYYHYS 176

Query: 140 YSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           YSVVRGCDRIVPVDIYVPGCPPT+EAL+YGI  LQ+K+R     +
Sbjct: 177 YSVVRGCDRIVPVDIYVPGCPPTSEALMYGIFQLQRKMRNTKITR 221


>gi|68171628|ref|ZP_00544995.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit [Ehrlichia
           chaffeensis str. Sapulpa]
 gi|67998949|gb|EAM85633.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit [Ehrlichia
           chaffeensis str. Sapulpa]
          Length = 182

 Score =  237 bits (606), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 115/169 (68%), Positives = 131/169 (77%), Gaps = 5/169 (2%)

Query: 19  LEKVDADFS-RISSEITHKGFLVTSVDQLVT----WARTGSLMWMTFGLACCAVEMMQAS 73
           + K D+  + +      H+GF+VT    L+     WAR+ SL  MTFGLACCAVEMM  +
Sbjct: 2   INKNDSVLNNQFWQSYNHQGFMVTQFSDLINYISNWARSNSLWPMTFGLACCAVEMMHTA 61

Query: 74  MPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGG 133
             RYDL+R+G   RASPRQ+DVMIVAGTLTNKMA ALR+VYDQM EPRYVISMGSCANGG
Sbjct: 62  ASRYDLDRYGVMFRASPRQADVMIVAGTLTNKMAPALRKVYDQMTEPRYVISMGSCANGG 121

Query: 134 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
           GYYHYSYSVVRGCDRIVPVDI+VPGCPPTAEAL+YGI  LQ+KI R   
Sbjct: 122 GYYHYSYSVVRGCDRIVPVDIFVPGCPPTAEALLYGIFCLQQKINRGNT 170


>gi|156384021|ref|XP_001633130.1| predicted protein [Nematostella vectensis]
 gi|156220196|gb|EDO41067.1| predicted protein [Nematostella vectensis]
          Length = 209

 Score =  237 bits (606), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 100/142 (70%), Positives = 123/142 (86%)

Query: 37  GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVM 96
           G++VT +D LV W+R  SL  + FGLACC +EMM  + PRYD++RFG   RASPRQ DVM
Sbjct: 56  GYVVTKLDDLVNWSRRSSLWPLMFGLACCGIEMMHFAAPRYDMDRFGVVFRASPRQIDVM 115

Query: 97  IVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV 156
           +V+GT+TNKMA ALRR+YDQMPEPR+VIS+GSCAN GGYY++SYSVVRGCDRI+PVDIYV
Sbjct: 116 LVSGTVTNKMAPALRRLYDQMPEPRWVISVGSCANSGGYYYHSYSVVRGCDRIIPVDIYV 175

Query: 157 PGCPPTAEALIYGILLLQKKIR 178
           PGCPP+AEAL++G+L LQKK+R
Sbjct: 176 PGCPPSAEALLFGVLQLQKKVR 197


>gi|315051282|ref|XP_003175015.1| NADH-ubiquinone oxidoreductase subunit [Arthroderma gypseum CBS
           118893]
 gi|311340330|gb|EFQ99532.1| NADH-ubiquinone oxidoreductase subunit [Arthroderma gypseum CBS
           118893]
          Length = 191

 Score =  237 bits (606), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 111/186 (59%), Positives = 132/186 (70%), Gaps = 2/186 (1%)

Query: 1   MGLTTVNQK--IISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWM 58
           M  TT  Q     S       ++++        E T    +VT +DQ+  WAR GSL  +
Sbjct: 1   MPATTAGQTNATCSKALVPRPKRLEVPLPSQGEEPTPLRHMVTKLDQITNWARQGSLWPL 60

Query: 59  TFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMP 118
            FGLACC VEMM  SMPRYDL+R G   RASPRQ+DV+IV+GT+TNKM  ALR +YDQMP
Sbjct: 61  MFGLACCGVEMMALSMPRYDLDRMGIIYRASPRQADVLIVSGTVTNKMGPALRLLYDQMP 120

Query: 119 EPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           +P++VISMGSCANGGGYYHYSYSVVRG DR+VPVD+YVPGCPPTAEA +YGIL LQKKI 
Sbjct: 121 DPKWVISMGSCANGGGYYHYSYSVVRGVDRLVPVDVYVPGCPPTAEAFMYGILQLQKKIS 180

Query: 179 RVGNVK 184
           R    +
Sbjct: 181 RQRTTR 186


>gi|242088593|ref|XP_002440129.1| hypothetical protein SORBIDRAFT_09g026580 [Sorghum bicolor]
 gi|241945414|gb|EES18559.1| hypothetical protein SORBIDRAFT_09g026580 [Sorghum bicolor]
          Length = 202

 Score =  237 bits (606), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 115/144 (79%), Positives = 123/144 (85%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           F+V+ VD L+ WAR GS+  MTFGLACCAVEMM A   RYD +RFG   R SPRQSD MI
Sbjct: 51  FVVSKVDDLMNWARRGSIWPMTFGLACCAVEMMHAGASRYDFDRFGLIFRPSPRQSDCMI 110

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGTLTNKMA ALRRVYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP
Sbjct: 111 VAGTLTNKMAPALRRVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 170

Query: 158 GCPPTAEALIYGILLLQKKIRRVG 181
           GCPPTAEAL+YG+L LQKKI R  
Sbjct: 171 GCPPTAEALLYGVLQLQKKINRRK 194


>gi|302912562|ref|XP_003050728.1| hypothetical protein NECHADRAFT_60986 [Nectria haematococca mpVI
           77-13-4]
 gi|256731666|gb|EEU45015.1| hypothetical protein NECHADRAFT_60986 [Nectria haematococca mpVI
           77-13-4]
          Length = 223

 Score =  237 bits (606), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 110/160 (68%), Positives = 127/160 (79%), Gaps = 3/160 (1%)

Query: 28  RISSEITHKGFL---VTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF 84
            + SE   K  +   +T++D +  WAR  SL  MTFGLACCAVEMM  S PRYD +R G 
Sbjct: 59  PLPSEEGTKSVIQYALTTLDVIANWARQSSLWPMTFGLACCAVEMMHLSTPRYDQDRLGI 118

Query: 85  APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR 144
             RASPRQSDVMIVAGTLTNKMA ALR+VYDQMP+PR+V+SMGSCANGGGYYHYSYSVVR
Sbjct: 119 IFRASPRQSDVMIVAGTLTNKMAPALRQVYDQMPDPRWVVSMGSCANGGGYYHYSYSVVR 178

Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           GCDRIVPVD+YVPGCPPT+EAL+YGI  LQ+K+R     +
Sbjct: 179 GCDRIVPVDVYVPGCPPTSEALMYGIFQLQRKMRNTKITR 218


>gi|167463142|ref|ZP_02328231.1| NADH-quinone oxidoreductase, B subunit [Paenibacillus larvae subsp.
           larvae BRL-230010]
 gi|322383097|ref|ZP_08056924.1| hypothetical protein PL1_1946 [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321152759|gb|EFX45385.1| hypothetical protein PL1_1946 [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 172

 Score =  237 bits (606), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 90/158 (56%), Positives = 116/158 (73%), Gaps = 1/158 (0%)

Query: 21  KVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLE 80
           ++DA    +  E+  +    T++DQ+  WAR+ SL  +TFGLACCA+EMM      YDL+
Sbjct: 4   RLDAVLPEVQEEL-QRNVFTTTLDQVKAWARSSSLWPLTFGLACCAIEMMGTGAAHYDLD 62

Query: 81  RFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSY 140
           RFG   R SPRQ+DVMIVA T+T KMA  LRR+Y+QMPEP++VI+MGSCA  GG Y  SY
Sbjct: 63  RFGVIFRTSPRQADVMIVAETVTKKMAPLLRRLYEQMPEPKWVIAMGSCATAGGPYVKSY 122

Query: 141 SVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           +VV+G D++VPVD+Y+PGCPP   ALIYGI  LQ+KIR
Sbjct: 123 AVVKGVDQVVPVDVYIPGCPPNPAALIYGIHKLQEKIR 160


>gi|160871863|ref|ZP_02061995.1| NADH-quinone oxidoreductase chain b (nadh dehydrogenasei, chain b)
           (ndh-1, chain b) [Rickettsiella grylli]
 gi|159120662|gb|EDP46000.1| NADH-quinone oxidoreductase chain b (nadh dehydrogenasei, chain b)
           (ndh-1, chain b) [Rickettsiella grylli]
          Length = 160

 Score =  237 bits (606), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 111/156 (71%), Positives = 131/156 (83%)

Query: 29  ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88
           I S +  +GF  TS D+L+ WAR+GSL  M+FGLACCAVEMM ++  RYDL+RFG   R 
Sbjct: 3   IESLLQQQGFFTTSFDKLLAWARSGSLWPMSFGLACCAVEMMHSAASRYDLDRFGVVFRP 62

Query: 89  SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 148
           SPRQSDVMIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHY+YSVVRGCDR
Sbjct: 63  SPRQSDVMIVAGTLCNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYAYSVVRGCDR 122

Query: 149 IVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           IVPVD+YVPGCPPTAEAL+YG++ LQ KI++   ++
Sbjct: 123 IVPVDVYVPGCPPTAEALVYGVIQLQNKIKKNHFIE 158


>gi|74317161|ref|YP_314901.1| NADH dehydrogenase subunit B [Thiobacillus denitrificans ATCC
           25259]
 gi|123611053|sp|Q3SEX7|NUOB_THIDA RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|74056656|gb|AAZ97096.1| NADH dehydrogenase I chain B [Thiobacillus denitrificans ATCC
           25259]
          Length = 158

 Score =  237 bits (605), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 116/151 (76%), Positives = 128/151 (84%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           +  +GF+ T  DQL+ + RTGS+  MTFGLACCAVEMMQA   RYDL+RFG   R SPRQ
Sbjct: 6   VLEQGFVTTKADQLINYMRTGSMWPMTFGLACCAVEMMQAGASRYDLDRFGIVFRPSPRQ 65

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           SDVMIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPV
Sbjct: 66  SDVMIVAGTLCNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPV 125

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           DIYVPGCPPTAEALI+GI+ LQKKIRR   +
Sbjct: 126 DIYVPGCPPTAEALIFGIIQLQKKIRRTNTI 156


>gi|321259133|ref|XP_003194287.1| hypothetical protein CGB_E3580W [Cryptococcus gattii WM276]
 gi|317460758|gb|ADV22500.1| Conserved hypothetical protein [Cryptococcus gattii WM276]
          Length = 229

 Score =  237 bits (605), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 108/180 (60%), Positives = 136/180 (75%)

Query: 2   GLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFG 61
            + + +    S     +L +  ++   + +      ++++++D++V W R GS+  MTFG
Sbjct: 42  AINSYSHSPSSITPDTTLAQQGSNQLSLETPRNGAEYVLSTLDKIVNWGRQGSMWPMTFG 101

Query: 62  LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPR 121
           LACCAVEMM  +  RYD +R G   RASPRQSD+MIVAGTLTNKMA ALR+VYDQMPEPR
Sbjct: 102 LACCAVEMMHMAAARYDQDRLGVVFRASPRQSDIMIVAGTLTNKMAPALRKVYDQMPEPR 161

Query: 122 YVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
           +VISMGSCANGGGYYHYSY+VVRGCDRIVPVDIYVPGCPPTAEAL+YG+L L +K+RR  
Sbjct: 162 WVISMGSCANGGGYYHYSYAVVRGCDRIVPVDIYVPGCPPTAEALLYGMLQLMRKMRRNR 221


>gi|57239036|ref|YP_180172.1| NADH dehydrogenase subunit B [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58578978|ref|YP_197190.1| NADH dehydrogenase subunit B [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58617036|ref|YP_196235.1| NADH dehydrogenase subunit B [Ehrlichia ruminantium str. Gardel]
 gi|75432798|sp|Q5FHF7|NUOB_EHRRG RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|81557325|sp|Q5HBM2|NUOB_EHRRW RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|57161115|emb|CAH58026.1| NADH-quinone oxidoreductase chain B [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58416648|emb|CAI27761.1| NADH-ubiquinone oxidoreductase chain B [Ehrlichia ruminantium str.
           Gardel]
 gi|58417604|emb|CAI26808.1| NADH-ubiquinone oxidoreductase chain B [Ehrlichia ruminantium str.
           Welgevonden]
 gi|112434039|gb|ABI18364.1| NADH-quinone oxidoreductase chain B [Ehrlichia ruminantium]
 gi|112434041|gb|ABI18365.1| NADH-quinone oxidoreductase chain B [Ehrlichia ruminantium]
 gi|112434043|gb|ABI18366.1| NADH-quinone oxidoreductase chain B [Ehrlichia ruminantium]
 gi|112434045|gb|ABI18367.1| NADH-quinone oxidoreductase chain B [Ehrlichia ruminantium]
 gi|112434047|gb|ABI18368.1| NADH-quinone oxidoreductase chain B [Ehrlichia ruminantium]
 gi|112434049|gb|ABI18369.1| NADH-quinone oxidoreductase chain B [Ehrlichia ruminantium]
 gi|112434051|gb|ABI18370.1| NADH-quinone oxidoreductase chain B [Ehrlichia ruminantium]
 gi|112434053|gb|ABI18371.1| NADH-quinone oxidoreductase chain B [Ehrlichia ruminantium]
 gi|112434055|gb|ABI18372.1| NADH-quinone oxidoreductase chain B [Ehrlichia ruminantium]
 gi|112434057|gb|ABI18373.1| NADH-quinone oxidoreductase chain B [Ehrlichia ruminantium]
          Length = 172

 Score =  237 bits (605), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 114/153 (74%), Positives = 128/153 (83%), Gaps = 4/153 (2%)

Query: 34  THKGFLVTSVDQLVT----WARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS 89
            H+GF+VT +  L++    WAR+ SL  MTFGLACCAVEMM  +  +YDL+R+G   RAS
Sbjct: 18  NHRGFMVTKLSDLMSYVSSWARSNSLWPMTFGLACCAVEMMHTAASKYDLDRYGIMFRAS 77

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQ+DVMIVAGTLTNKMA ALR+VYDQM EPRYVISMGSCANGGGYYHYSYSVVRGCDRI
Sbjct: 78  PRQADVMIVAGTLTNKMAPALRKVYDQMTEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 137

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
           VPVDIYVPGCPPTAEAL+YGIL LQ+KI R   
Sbjct: 138 VPVDIYVPGCPPTAEALLYGILCLQQKINRTAT 170


>gi|112434037|gb|ABI18363.1| NADH-quinone oxidoreductase chain B [Ehrlichia ruminantium]
          Length = 171

 Score =  237 bits (605), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 114/153 (74%), Positives = 128/153 (83%), Gaps = 4/153 (2%)

Query: 34  THKGFLVTSVDQLVT----WARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS 89
            H+GF+VT +  L++    WAR+ SL  MTFGLACCAVEMM  +  +YDL+R+G   RAS
Sbjct: 18  NHRGFMVTKLSDLMSYVSSWARSNSLWPMTFGLACCAVEMMHTAASKYDLDRYGIMFRAS 77

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQ+DVMIVAGTLTNKMA ALR+VYDQM EPRYVISMGSCANGGGYYHYSYSVVRGCDRI
Sbjct: 78  PRQADVMIVAGTLTNKMAPALRKVYDQMTEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 137

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
           VPVDIYVPGCPPTAEAL+YGIL LQ+KI R   
Sbjct: 138 VPVDIYVPGCPPTAEALLYGILCLQQKINRTAT 170


>gi|169604652|ref|XP_001795747.1| hypothetical protein SNOG_05340 [Phaeosphaeria nodorum SN15]
 gi|160706616|gb|EAT87731.2| hypothetical protein SNOG_05340 [Phaeosphaeria nodorum SN15]
          Length = 229

 Score =  237 bits (604), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 112/184 (60%), Positives = 128/184 (69%)

Query: 1   MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTF 60
           M                 + + +        +     + +T++DQ+  WAR  SL  MTF
Sbjct: 41  MTTPATVPGNPGTPPPMKVARREVPLPSQEGKKGAIQYALTTLDQMANWARQSSLWPMTF 100

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           GLACCAVEMM  S PRYD +R G   RASPRQSDVMIVAGTLTNKMA ALR+VYDQMP+P
Sbjct: 101 GLACCAVEMMHLSTPRYDQDRLGIIFRASPRQSDVMIVAGTLTNKMAPALRQVYDQMPDP 160

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           R+VISMGSCANGGGYYHYSYSV RGCDRIVPVDIYVPGCPPTAEAL+YGI  LQKK+R  
Sbjct: 161 RWVISMGSCANGGGYYHYSYSVTRGCDRIVPVDIYVPGCPPTAEALMYGIFQLQKKMRHT 220

Query: 181 GNVK 184
              +
Sbjct: 221 KITR 224


>gi|332285016|ref|YP_004416927.1| NADH dehydrogenase subunit B [Pusillimonas sp. T7-7]
 gi|330428969|gb|AEC20303.1| NADH dehydrogenase subunit B [Pusillimonas sp. T7-7]
          Length = 158

 Score =  237 bits (604), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 111/151 (73%), Positives = 127/151 (84%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           I  +GF+ TS D+ + WA+TGSL  MTFGLACCAVEMM A   RYDL++FG   R SPRQ
Sbjct: 6   IMKEGFITTSADKFLNWAKTGSLWPMTFGLACCAVEMMHAGAARYDLDQFGIIFRPSPRQ 65

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           SD+MIVAGTL NKMA ALR+VYDQMPEPR+V+SMGSCANGGGYYHYSYSVVRGCDRIVPV
Sbjct: 66  SDLMIVAGTLCNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIVPV 125

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           D+YVPGCPPTAEAL+YG+L +Q KIR    +
Sbjct: 126 DVYVPGCPPTAEALVYGLLQMQNKIRLTNTI 156


>gi|328874905|gb|EGG23270.1| NADH-ubiquinone oxidoreductase 20 kDa subunit [Dictyostelium
           fasciculatum]
          Length = 179

 Score =  237 bits (604), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 114/173 (65%), Positives = 135/173 (78%)

Query: 11  ISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMM 70
           ++ Q+   L K+ A   + +   +    +++ +D LV WARTGS   MTFGLACCAVEMM
Sbjct: 1   MASQAGQHLSKLLASSFKAAPPSSVPEIVISKLDGLVNWARTGSFWPMTFGLACCAVEMM 60

Query: 71  QASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCA 130
                RYD++RFG  PRASPRQSD +IVAGTLTNKMA ALR+VYDQMP PRYVISMGSCA
Sbjct: 61  HGYAARYDMDRFGVIPRASPRQSDCIIVAGTLTNKMAPALRKVYDQMPNPRYVISMGSCA 120

Query: 131 NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           NGGGYYHYSYSVVRGCDRI+PVD+Y+PGCPPTAEA +YGIL LQKKI+R   +
Sbjct: 121 NGGGYYHYSYSVVRGCDRIIPVDVYIPGCPPTAEAFVYGILQLQKKIQREQAL 173


>gi|302904283|ref|XP_003049034.1| hypothetical protein NECHADRAFT_82494 [Nectria haematococca mpVI
           77-13-4]
 gi|256729969|gb|EEU43321.1| hypothetical protein NECHADRAFT_82494 [Nectria haematococca mpVI
           77-13-4]
          Length = 206

 Score =  237 bits (604), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 113/186 (60%), Positives = 132/186 (70%), Gaps = 4/186 (2%)

Query: 3   LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKG----FLVTSVDQLVTWARTGSLMWM 58
           +      ++    S S +K       + SE         + V S+D +  WAR GSL  M
Sbjct: 16  VAPAASSMLPRTVSTSSKKPPRVEMALQSENQKPSSIAEYAVASLDIIANWARQGSLWPM 75

Query: 59  TFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMP 118
           TFGLACCAVEMM  + PRYD +RFGF  RASPR +D+MIVAGT+TNKMA ALR+VYDQM 
Sbjct: 76  TFGLACCAVEMMHIAGPRYDQDRFGFMFRASPRHADIMIVAGTVTNKMAPALRQVYDQMA 135

Query: 119 EPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           +PR+VISMGSCANGGGYYHYSYSVVRG DRIVPVDIYVPGCPPT EALIYG+  LQ+KIR
Sbjct: 136 DPRWVISMGSCANGGGYYHYSYSVVRGVDRIVPVDIYVPGCPPTCEALIYGMFQLQRKIR 195

Query: 179 RVGNVK 184
           R    +
Sbjct: 196 RTKTSR 201


>gi|242015738|ref|XP_002428504.1| NADH-ubiquinone oxidoreductase 20 kDa subunit, putative [Pediculus
           humanus corporis]
 gi|212513138|gb|EEB15766.1| NADH-ubiquinone oxidoreductase 20 kDa subunit, putative [Pediculus
           humanus corporis]
          Length = 214

 Score =  237 bits (604), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 101/167 (60%), Positives = 125/167 (74%)

Query: 12  SGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQ 71
           +     + +     +S          +++   D  + WAR  S+  +TFGLACCAVEMM 
Sbjct: 37  ATDCQPTQDVPRKPYSPFQDTKNLGEYVLARTDDFINWARKSSIFPLTFGLACCAVEMMH 96

Query: 72  ASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCAN 131
            + PRYD++RFG   RASPRQ+D++IVAGTLTNKMA  LR++YDQM  P++VISMGSCAN
Sbjct: 97  MAAPRYDMDRFGVVFRASPRQADLIIVAGTLTNKMAPLLRKIYDQMLSPKWVISMGSCAN 156

Query: 132 GGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           GGGYYHYSYSVVRGCDRI+PVDIYVPGCPPTAEAL+Y +LLLQKKI+
Sbjct: 157 GGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALLYAVLLLQKKIK 203


>gi|259486449|tpe|CBF84294.1| TPA: hypothetical protein ANIA_11251 [Aspergillus nidulans FGSC A4]
          Length = 211

 Score =  237 bits (604), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 104/150 (69%), Positives = 120/150 (80%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP 90
            +     +++T  D L++WAR GS   ++F LACC VEMM  SMPRYD +R G   RASP
Sbjct: 53  EKSNKLDYVLTKTDALISWARNGSFWPLSFALACCGVEMMHTSMPRYDQDRLGIIFRASP 112

Query: 91  RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150
           RQ+DVMIVAGTLTNKMA ALR++YDQMPEPR+VISMGSCANGGGYYHYSYSVVRG DRIV
Sbjct: 113 RQADVMIVAGTLTNKMAPALRQLYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGVDRIV 172

Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           PVD+YVPGCPP  EAL+ GI  LQ+KIRR 
Sbjct: 173 PVDVYVPGCPPMPEALLQGIFTLQRKIRRT 202


>gi|226372608|gb|ACO51929.1| NADH dehydrogenase iron-sulfur protein 7, mitochondrial precursor
           [Rana catesbeiana]
          Length = 217

 Score =  237 bits (604), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 123/172 (71%), Positives = 137/172 (79%), Gaps = 3/172 (1%)

Query: 4   TTVNQKIISGQSSCSLEKVDADFSRISSEITHKG-FLVTSVDQLVTWARTGSLMWMTFGL 62
           T  N+  IS   S   +K  A  +  SS  + KG F+VT +D LV+WAR  SL  MTFGL
Sbjct: 33  TADNENSISA--SLVRQKSGAVPATKSSVPSGKGEFIVTKLDDLVSWARRSSLWPMTFGL 90

Query: 63  ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122
           ACCAVEMM  + PRYD++RFG   RASPRQ+DVMIVAGTLTNKMA ALR+VYDQMPEPRY
Sbjct: 91  ACCAVEMMHMAAPRYDMDRFGVVFRASPRQADVMIVAGTLTNKMAPALRKVYDQMPEPRY 150

Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQ 174
           V+SMGSCANGGGYYHYSYSVVRGCD IVPVDIYVPGCPPTAEAL+YGIL LQ
Sbjct: 151 VVSMGSCANGGGYYHYSYSVVRGCDGIVPVDIYVPGCPPTAEALLYGILQLQ 202


>gi|294788083|ref|ZP_06753327.1| NADH dehydrogenase (ubiquinone), B subunit [Simonsiella muelleri
           ATCC 29453]
 gi|294484376|gb|EFG32059.1| NADH dehydrogenase (ubiquinone), B subunit [Simonsiella muelleri
           ATCC 29453]
          Length = 159

 Score =  236 bits (603), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 108/151 (71%), Positives = 127/151 (84%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           + +KGF+  S D ++ + RTGSL  +TFGLACCAVEMM A M RYDL+RFG   R SPRQ
Sbjct: 6   VLNKGFVTASADTVLNYVRTGSLWPVTFGLACCAVEMMHAGMARYDLDRFGIIFRPSPRQ 65

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           SD+MIVAGTLTNKMA ALRRVYDQM EPR+V+SMG+CANGGGYYHYSYSVVRG DR+VPV
Sbjct: 66  SDLMIVAGTLTNKMAPALRRVYDQMAEPRWVLSMGTCANGGGYYHYSYSVVRGADRVVPV 125

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           D+YVPGCPPTAEAL+YG++ LQ KI+R   +
Sbjct: 126 DVYVPGCPPTAEALLYGLIQLQGKIKRTCTI 156


>gi|301107944|ref|XP_002903054.1| NADH ubiquinone oxidoreductase, putative [Phytophthora infestans
           T30-4]
 gi|262098172|gb|EEY56224.1| NADH ubiquinone oxidoreductase, putative [Phytophthora infestans
           T30-4]
          Length = 205

 Score =  236 bits (603), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 105/146 (71%), Positives = 124/146 (84%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           ++V+ VD LV W R  SL  +TFGLACCAVEMM ++  RYD ER G   RASPRQ+DVMI
Sbjct: 54  YVVSRVDDLVNWGRKSSLWPITFGLACCAVEMMHSAGSRYDFERMGMVFRASPRQTDVMI 113

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGTLTNKMA ALRRVYDQMPEPRYV+SMGSCANGGGYYHYSY+VVRG DR++PVDIYVP
Sbjct: 114 VAGTLTNKMAPALRRVYDQMPEPRYVVSMGSCANGGGYYHYSYAVVRGADRVIPVDIYVP 173

Query: 158 GCPPTAEALIYGILLLQKKIRRVGNV 183
           GCPPTAEAL++G++ LQKK++   ++
Sbjct: 174 GCPPTAEALLFGLMQLQKKVKGNKSL 199


>gi|237746750|ref|ZP_04577230.1| NADH-quinone oxidoreductase subunit B [Oxalobacter formigenes
           HOxBLS]
 gi|229378101|gb|EEO28192.1| NADH-quinone oxidoreductase subunit B [Oxalobacter formigenes
           HOxBLS]
          Length = 159

 Score =  236 bits (603), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 105/151 (69%), Positives = 127/151 (84%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           + +KGF+ T++D  + W RTGS+  ++FGLACCA+EMM +S  RYD++RFG   RASPRQ
Sbjct: 6   LLNKGFVTTTLDTAINWLRTGSVWPVSFGLACCAIEMMHSSASRYDMDRFGTFFRASPRQ 65

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           SD+MIVAGTL NKMA ALR+VYDQM EPR+V+SMGSCANGGGYYH SYSVVRGCDRIVPV
Sbjct: 66  SDLMIVAGTLCNKMAPALRKVYDQMAEPRWVVSMGSCANGGGYYHDSYSVVRGCDRIVPV 125

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           DIYVPGCPPTAEAL+Y ++ L+ KIRR   +
Sbjct: 126 DIYVPGCPPTAEALLYALMQLRGKIRRTSTI 156


>gi|301107922|ref|XP_002903043.1| NADH ubiquinone oxidoreductase, putative [Phytophthora infestans
           T30-4]
 gi|262098161|gb|EEY56213.1| NADH ubiquinone oxidoreductase, putative [Phytophthora infestans
           T30-4]
          Length = 205

 Score =  236 bits (603), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 105/146 (71%), Positives = 124/146 (84%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           ++V+ VD LV W R  SL  +TFGLACCAVEMM ++  RYD ER G   RASPRQ+DVMI
Sbjct: 54  YVVSRVDDLVNWGRKSSLWPITFGLACCAVEMMHSAGSRYDFERMGMVFRASPRQTDVMI 113

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGTLTNKMA ALRRVYDQMPEPRYV+SMGSCANGGGYYHYSY+VVRG DR++PVDIYVP
Sbjct: 114 VAGTLTNKMAPALRRVYDQMPEPRYVVSMGSCANGGGYYHYSYAVVRGADRVIPVDIYVP 173

Query: 158 GCPPTAEALIYGILLLQKKIRRVGNV 183
           GCPPTAEAL++G++ LQKK++   ++
Sbjct: 174 GCPPTAEALLFGLMQLQKKVKGNKSL 199


>gi|293603920|ref|ZP_06686335.1| NADH-quinone oxidoreductase subunit B [Achromobacter piechaudii
           ATCC 43553]
 gi|311104659|ref|YP_003977512.1| NADH-quinone oxidoreductase subunit B [Achromobacter xylosoxidans
           A8]
 gi|218528077|sp|A9II02|NUOB_BORPD RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|292817757|gb|EFF76823.1| NADH-quinone oxidoreductase subunit B [Achromobacter piechaudii
           ATCC 43553]
 gi|310759348|gb|ADP14797.1| NADH-quinone oxidoreductase, B subunit [Achromobacter xylosoxidans
           A8]
 gi|317401989|gb|EFV82589.1| NADH-ubiquinone oxidoreductase [Achromobacter xylosoxidans C54]
          Length = 158

 Score =  236 bits (603), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 110/151 (72%), Positives = 127/151 (84%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           I  +GF+ TS D+ + WA+TGS+  MTFGLACCAVEMM A   RYDL++FG   R SPRQ
Sbjct: 6   ILKQGFITTSADKFLNWAKTGSMWPMTFGLACCAVEMMHAGAARYDLDQFGIIFRPSPRQ 65

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           SD+MIVAGTL NKMA ALR+VYDQMPEPR+V+SMGSCANGGGYYHYSYSVVRGCDRIVPV
Sbjct: 66  SDLMIVAGTLCNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIVPV 125

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           D+YVPGCPPTAEAL+YG+L +Q KIR    +
Sbjct: 126 DVYVPGCPPTAEALVYGLLQMQNKIRLTNTI 156


>gi|330913880|ref|XP_003296406.1| hypothetical protein PTT_06502 [Pyrenophora teres f. teres 0-1]
 gi|311331451|gb|EFQ95498.1| hypothetical protein PTT_06502 [Pyrenophora teres f. teres 0-1]
          Length = 230

 Score =  236 bits (603), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 117/185 (63%), Positives = 133/185 (71%), Gaps = 4/185 (2%)

Query: 4   TTVNQKIISGQSSCSLEKVDADFS-RISSEITHKG---FLVTSVDQLVTWARTGSLMWMT 59
           T      I G         +A     + S+   KG   + +T++DQ+  WAR  SL  MT
Sbjct: 41  TMKTPATIPGNPGTPPPMKNARVEVPLPSQEGKKGAMQYALTTLDQVANWARQSSLWPMT 100

Query: 60  FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119
           FGLACCAVEMM  S PRYD +R G   RASPRQSDVMIVAGTLTNKMA ALR+VYDQMP+
Sbjct: 101 FGLACCAVEMMHLSTPRYDQDRLGIIFRASPRQSDVMIVAGTLTNKMAPALRQVYDQMPD 160

Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           PR+VISMGSCANGGGYYHYSYSV RGCDRIVPVDIYVPGCPPTAEAL+YG+  LQKK+R 
Sbjct: 161 PRWVISMGSCANGGGYYHYSYSVTRGCDRIVPVDIYVPGCPPTAEALMYGVFQLQKKMRH 220

Query: 180 VGNVK 184
               +
Sbjct: 221 TKITR 225


>gi|301107924|ref|XP_002903044.1| NADH ubiquinone oxidoreductase, putative [Phytophthora infestans
           T30-4]
 gi|262098162|gb|EEY56214.1| NADH ubiquinone oxidoreductase, putative [Phytophthora infestans
           T30-4]
          Length = 213

 Score =  236 bits (603), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 103/146 (70%), Positives = 122/146 (83%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           + V+ +D LV W R  SL  ++FGLACCAVEMM A+  RYD ER G   RASPRQ+DVMI
Sbjct: 62  YAVSRLDDLVNWGRKSSLWPISFGLACCAVEMMHAAGSRYDFERMGMVFRASPRQTDVMI 121

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGTLTNKMA ALRR+YDQMPEPRYV+S+GSCANGGGYYHYSY+V RG DR+VPVDIYVP
Sbjct: 122 VAGTLTNKMAPALRRIYDQMPEPRYVVSLGSCANGGGYYHYSYAVARGVDRVVPVDIYVP 181

Query: 158 GCPPTAEALIYGILLLQKKIRRVGNV 183
           GCPPT+EALI+G++ LQKKI+   ++
Sbjct: 182 GCPPTSEALIFGLMQLQKKIKGNKSL 207


>gi|255941166|ref|XP_002561352.1| Pc16g10420 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211585975|emb|CAP93712.1| Pc16g10420 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 209

 Score =  236 bits (603), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 107/155 (69%), Positives = 126/155 (81%), Gaps = 1/155 (0%)

Query: 30  SSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS 89
           S +    G+L+ + DQLV W R GSL  ++FGLACC +EMM  SMPRYD +R G   RAS
Sbjct: 51  SEKDGASGYLLYA-DQLVNWGRQGSLWPLSFGLACCGIEMMHTSMPRYDQDRLGIIFRAS 109

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQ+DVMIVAGT+ NKMA A+R++YDQMPEP++VISMGSCANGGGYYHYSY+VVRG DRI
Sbjct: 110 PRQADVMIVAGTVVNKMAPAVRQLYDQMPEPKWVISMGSCANGGGYYHYSYNVVRGVDRI 169

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           VPVDIYVPGCPPTAEAL+ GI LLQKK+RR    +
Sbjct: 170 VPVDIYVPGCPPTAEALLQGIFLLQKKMRRTQVTR 204


>gi|310800125|gb|EFQ35018.1| NADH-quinone oxidoreductase [Glomerella graminicola M1.001]
          Length = 201

 Score =  236 bits (602), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 110/165 (66%), Positives = 126/165 (76%)

Query: 20  EKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDL 79
           E+ +              + +TS+D +  WAR  SL  MTFGLACCAVEMM  S PRYD 
Sbjct: 32  ERKEVPLPSQEGTKGVMQYALTSLDVITNWARQSSLWPMTFGLACCAVEMMHLSTPRYDQ 91

Query: 80  ERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS 139
           +R G   RASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYS
Sbjct: 92  DRLGIIFRASPRQSDVMIVAGTLTNKMAPALRQVYDQMPEPRWVISMGSCANGGGYYHYS 151

Query: 140 YSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           YSVVRGCDR+VPVD+YVPGCPPT+EAL+YGI  LQ+K+R     +
Sbjct: 152 YSVVRGCDRVVPVDVYVPGCPPTSEALMYGIFQLQRKMRNTKITR 196


>gi|237748890|ref|ZP_04579370.1| NADH-quinone oxidoreductase subunit B [Oxalobacter formigenes
           OXCC13]
 gi|229380252|gb|EEO30343.1| NADH-quinone oxidoreductase subunit B [Oxalobacter formigenes
           OXCC13]
          Length = 159

 Score =  236 bits (602), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 106/151 (70%), Positives = 128/151 (84%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           +  KGF+ T++D  + W RTGS+  +TFGLACCA+EMM +SMPRYD++RFG   RASPRQ
Sbjct: 6   LMDKGFVTTTLDTAINWLRTGSVWPVTFGLACCAIEMMHSSMPRYDMDRFGTFFRASPRQ 65

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           SD+MIVAGTL NKMA ALR+VYDQM EPR+V+SMGSCANGGGYYH SYSVVRGCD+IVPV
Sbjct: 66  SDLMIVAGTLCNKMAPALRKVYDQMAEPRWVVSMGSCANGGGYYHDSYSVVRGCDKIVPV 125

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           DIYVPGCPPTAEAL+Y ++ L+ KI+R   +
Sbjct: 126 DIYVPGCPPTAEALLYALIQLRTKIKRTSTI 156


>gi|62263125|gb|AAX78129.1| unknown protein [synthetic construct]
          Length = 193

 Score =  235 bits (601), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 112/165 (67%), Positives = 128/165 (77%)

Query: 19  LEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78
           ++  D     +     +KGF+  S D L+ W RTGSL  +T GLACCAVEMM A   RYD
Sbjct: 17  IDDDDKHMLEVGIGNENKGFITASADALINWVRTGSLWPVTTGLACCAVEMMHAGAARYD 76

Query: 79  LERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY 138
           L+RFG   R SPRQSDV+IVAGTL NKMA ALR+VYDQMP+P++VISMGSCANGGGYYHY
Sbjct: 77  LDRFGIVFRPSPRQSDVLIVAGTLCNKMAPALRQVYDQMPDPKWVISMGSCANGGGYYHY 136

Query: 139 SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           SYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGI+ LQ KI R   +
Sbjct: 137 SYSVVRGCDRIVPVDIYVPGCPPTAEALVYGIIQLQNKIIRKDTI 181


>gi|270008238|gb|EFA04686.1| hypothetical protein TcasGA2_TC014482 [Tribolium castaneum]
          Length = 204

 Score =  235 bits (601), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 105/174 (60%), Positives = 136/174 (78%), Gaps = 4/174 (2%)

Query: 11  ISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMM 70
           I  +S+C   +  + F   +       +++  +D L+ W R  S+  +TFGLACCA+EMM
Sbjct: 28  IRCESTCPERRPYSPFRPKNQT----EWVLARLDDLLNWGRKTSMWPLTFGLACCAIEMM 83

Query: 71  QASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCA 130
             + PRYD++R+G   RASPRQ++V+IVAGT+TNKMA++LR+VYDQMPEPR+VISMGSCA
Sbjct: 84  HIAAPRYDMDRYGVVFRASPRQTEVIIVAGTVTNKMAASLRKVYDQMPEPRWVISMGSCA 143

Query: 131 NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           NGGGYYHYSYSVVRGC+RI+PVDIYVPGCPPTAEAL+YGIL LQKK+ R   ++
Sbjct: 144 NGGGYYHYSYSVVRGCNRIIPVDIYVPGCPPTAEALMYGILQLQKKVNRHNAIQ 197


>gi|189196624|ref|XP_001934650.1| NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial
           precursor [Pyrenophora tritici-repentis Pt-1C-BFP]
 gi|187980529|gb|EDU47155.1| NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial
           precursor [Pyrenophora tritici-repentis Pt-1C-BFP]
          Length = 209

 Score =  235 bits (601), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 112/184 (60%), Positives = 128/184 (69%)

Query: 1   MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTF 60
           M                   +V+        +     + +T++DQ+  WAR  SL  MTF
Sbjct: 21  MKTPATIPGNPGTPPPMKKARVEVPLPSQEGKKGAMQYALTTLDQVANWARQSSLWPMTF 80

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           GLACCAVEMM  S PRYD +R G   RASPRQSDVMIVAGTLTNKMA ALR+VYDQMP+P
Sbjct: 81  GLACCAVEMMHLSTPRYDQDRLGIIFRASPRQSDVMIVAGTLTNKMAPALRQVYDQMPDP 140

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           R+VISMGSCANGGGYYHYSYSV RGCDRIVPVDIYVPGCPPTAEAL+YG+  LQKK+R  
Sbjct: 141 RWVISMGSCANGGGYYHYSYSVTRGCDRIVPVDIYVPGCPPTAEALMYGVFQLQKKMRHT 200

Query: 181 GNVK 184
              +
Sbjct: 201 KITR 204


>gi|114053179|ref|NP_001040530.1| NADH-ubiquinone oxidoreductase 20 kDa subunit precursor [Bombyx
           mori]
 gi|95102896|gb|ABF51389.1| NADH-ubiquinone oxidoreductase 20 kDa subunit precursor [Bombyx
           mori]
          Length = 235

 Score =  235 bits (601), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 99/147 (67%), Positives = 122/147 (82%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           ++V   D ++ W R  S+  +TFGLACCA+EMM  + PRYD++R G   R +PRQ+DV+I
Sbjct: 84  WVVARADDILNWGRRNSVWPLTFGLACCALEMMHYAGPRYDMDRLGMVFRGTPRQTDVII 143

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGT+TNKMA ALR+ YD MPEPR+V+SMGSCANGGGYYHY+YS VRGCDRIVPVDIYVP
Sbjct: 144 VAGTVTNKMAPALRKTYDLMPEPRWVVSMGSCANGGGYYHYTYSTVRGCDRIVPVDIYVP 203

Query: 158 GCPPTAEALIYGILLLQKKIRRVGNVK 184
           GCPPTAEAL+YG+L LQKKI+R+  V+
Sbjct: 204 GCPPTAEALLYGMLQLQKKIKRMRVVQ 230


>gi|307006579|gb|ADN23574.1| NADH-ubiquinone oxidoreductase NUFS7/PSST/20 kDa subunit [Hyalomma
           marginatum rufipes]
          Length = 182

 Score =  235 bits (600), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 107/177 (60%), Positives = 128/177 (72%)

Query: 8   QKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAV 67
            K     SS    K        +       F +   D ++ W R  SL  +TFGLACCAV
Sbjct: 1   SKSSEPVSSEPEVKQPWRPYSPAKPANMVEFALARADDILAWGRKTSLWPLTFGLACCAV 60

Query: 68  EMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMG 127
           EMM  + PRYD++R+G   RASPRQ+DV+IVAGT+TNKMA ALR+VYDQM EP++VIS G
Sbjct: 61  EMMHIAAPRYDMDRYGVVFRASPRQADVIIVAGTVTNKMAPALRKVYDQMLEPKWVISTG 120

Query: 128 SCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           SCANGGGYYHYSYSVVRGCDRI+PVDIYVPGCPPTAEAL+YGIL LQ+KI+R+   +
Sbjct: 121 SCANGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALMYGILQLQRKIKRLNLTQ 177


>gi|42520927|ref|NP_966842.1| NADH dehydrogenase subunit B [Wolbachia endosymbiont of Drosophila
           melanogaster]
 gi|58698296|ref|ZP_00373213.1| NADH-quinone oxidoreductase, B subunit [Wolbachia endosymbiont of
           Drosophila ananassae]
 gi|225630974|ref|YP_002727765.1| NADH dehydrogenase I, B subunit [Wolbachia sp. wRi]
 gi|225631316|ref|ZP_03787991.1| NADH dehydrogenase I, B subunit [Wolbachia endosymbiont of
           Muscidifurax uniraptor]
 gi|81652220|sp|Q73G42|NUOB_WOLPM RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|254767799|sp|C0R4Y2|NUOB_WOLWR RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|42410668|gb|AAS14776.1| NADH dehydrogenase I, B subunit [Wolbachia endosymbiont of
           Drosophila melanogaster]
 gi|58535169|gb|EAL59251.1| NADH-quinone oxidoreductase, B subunit [Wolbachia endosymbiont of
           Drosophila ananassae]
 gi|225590991|gb|EEH12198.1| NADH dehydrogenase I, B subunit [Wolbachia endosymbiont of
           Muscidifurax uniraptor]
 gi|225592955|gb|ACN95974.1| NADH dehydrogenase I, B subunit [Wolbachia sp. wRi]
          Length = 168

 Score =  235 bits (600), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 114/152 (75%), Positives = 129/152 (84%), Gaps = 4/152 (2%)

Query: 35  HKGFLVTSV----DQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP 90
            +GFLVT      D ++ WAR+GSL  MTFGLACCAVEMM  +  RYDL+R+G   RASP
Sbjct: 16  KEGFLVTKFGDLTDYVMNWARSGSLWPMTFGLACCAVEMMHTASSRYDLDRYGIMFRASP 75

Query: 91  RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150
           RQSDVMIVAGTLTNKMA+ALR+VYDQM +P+YVISMGSCANGGGYYHYSYSVVRGCDRIV
Sbjct: 76  RQSDVMIVAGTLTNKMAAALRKVYDQMADPKYVISMGSCANGGGYYHYSYSVVRGCDRIV 135

Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
           PVD+YVPGCPPTAEAL+YG+L LQ KI+R  N
Sbjct: 136 PVDVYVPGCPPTAEALLYGMLCLQNKIKRTRN 167


>gi|260223141|emb|CBA33408.1| NADH-quinone oxidoreductase subunit B [Curvibacter putative
           symbiont of Hydra magnipapillata]
          Length = 158

 Score =  235 bits (600), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 113/152 (74%), Positives = 130/152 (85%), Gaps = 1/152 (0%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPR 91
           + ++GF+ TS D +V WA+TGS+  MTFGLACCAVEMM A+  RYD+ RFG    RASPR
Sbjct: 4   VLNEGFVTTSYDSVVNWAKTGSIWPMTFGLACCAVEMMHAAAARYDISRFGSEVFRASPR 63

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
           QSD+MIVAGTL NKMA ALR+VYDQM EPR+V+SMGSCANGGGYYHYSYSVVRGCDRIVP
Sbjct: 64  QSDLMIVAGTLCNKMAPALRKVYDQMSEPRWVLSMGSCANGGGYYHYSYSVVRGCDRIVP 123

Query: 152 VDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           VD+YVPGCPPTAEAL+YGIL LQ+KIRR   +
Sbjct: 124 VDVYVPGCPPTAEALLYGILQLQQKIRRTQTI 155


>gi|158291431|ref|XP_312939.3| AGAP003231-PA [Anopheles gambiae str. PEST]
 gi|157017771|gb|EAA08348.4| AGAP003231-PA [Anopheles gambiae str. PEST]
          Length = 220

 Score =  235 bits (600), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 108/155 (69%), Positives = 129/155 (83%)

Query: 30  SSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS 89
           + +     + V  +D L+ W R GS+    FGLACCA+EMMQA+ PRYD++RFG   RAS
Sbjct: 61  AKQSNTAEWTVARLDDLLNWGRKGSMWPTMFGLACCAMEMMQAAAPRYDIDRFGVLFRAS 120

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQ+D +IVAGTLTNKMA ALR++YDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRI
Sbjct: 121 PRQTDFIIVAGTLTNKMAPALRKIYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRI 180

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           +PVDIYVPGCPPTAEALIYG+L LQKK++R+  V+
Sbjct: 181 IPVDIYVPGCPPTAEALIYGVLQLQKKVKRMKTVQ 215


>gi|167627154|ref|YP_001677654.1| NADH dehydrogenase subunit B [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|238065146|sp|B0TWP5|NUOB_FRAP2 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|167597155|gb|ABZ87153.1| NADH dehydrogenase (quinone) [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
          Length = 158

 Score =  235 bits (600), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 110/150 (73%), Positives = 124/150 (82%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
            +KGF+  S D L+ W RTGSL  +T GLACCAVEMM A   RYDL+RFG   R SPRQS
Sbjct: 6   ENKGFITASADALINWVRTGSLWPVTTGLACCAVEMMHAGAARYDLDRFGIVFRPSPRQS 65

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD 153
           DV+IVAGTL NKMA ALR+VYDQMP+P++VISMGSCANGGGYYHYSYSVVRGCDRI+PVD
Sbjct: 66  DVLIVAGTLCNKMAPALRQVYDQMPDPKWVISMGSCANGGGYYHYSYSVVRGCDRIIPVD 125

Query: 154 IYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           IYVPGCPPTAEAL+YGI+ LQ KI R   +
Sbjct: 126 IYVPGCPPTAEALVYGIIQLQNKIIRKDTI 155


>gi|187477542|ref|YP_785566.1| NADH dehydrogenase subunit B [Bordetella avium 197N]
 gi|123513819|sp|Q2KV17|NUOB_BORA1 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|115422128|emb|CAJ48652.1| NADH dehydrogenase I chain B [Bordetella avium 197N]
          Length = 158

 Score =  235 bits (599), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 109/151 (72%), Positives = 126/151 (83%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           I  +GF+ TS D+ + WA+TGS+  MTFGLACCAVEMM A   RYDL++FG   R SPRQ
Sbjct: 6   ILKQGFITTSADKFINWAKTGSMWPMTFGLACCAVEMMHAGAARYDLDQFGIIFRPSPRQ 65

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           SD+MIVAGTL NKM  ALR+VYDQMPEPR+V+SMGSCANGGGYYHYSYSVVRGCDRIVPV
Sbjct: 66  SDLMIVAGTLCNKMGPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIVPV 125

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           D+YVPGCPPTAEAL+YG+L +Q KIR    +
Sbjct: 126 DVYVPGCPPTAEALVYGLLQMQNKIRLTNTI 156


>gi|121609761|ref|YP_997568.1| NADH dehydrogenase subunit B [Verminephrobacter eiseniae EF01-2]
 gi|218528011|sp|A1WLP3|NUOB_VEREI RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|121554401|gb|ABM58550.1| NADH-quinone oxidoreductase, B subunit [Verminephrobacter eiseniae
           EF01-2]
          Length = 159

 Score =  235 bits (599), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 113/154 (73%), Positives = 129/154 (83%), Gaps = 1/154 (0%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89
             +  +GF+ TS D +V WA+TGSL  MTFGLACCAVEM+ ++  RYDL RFG    RAS
Sbjct: 3   ENVMKEGFITTSYDSVVNWAKTGSLWPMTFGLACCAVEMIHSAAARYDLARFGAEVFRAS 62

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQ+D+MIVAGTL NKMA ALR+VYDQM EPR+V+SMGSCANGGGYYHYSYSVVRGCDRI
Sbjct: 63  PRQADLMIVAGTLCNKMAPALRKVYDQMSEPRWVLSMGSCANGGGYYHYSYSVVRGCDRI 122

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           VPVD+YVPGCPPTAEALIYGIL LQ+KIRR   +
Sbjct: 123 VPVDVYVPGCPPTAEALIYGILQLQQKIRRSHTI 156


>gi|83775539|dbj|BAE65659.1| unnamed protein product [Aspergillus oryzae]
          Length = 172

 Score =  235 bits (599), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 105/154 (68%), Positives = 124/154 (80%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP 90
           +E+  + F  T++DQLV WAR  SL  ++FGLACCAVEMMQ SMPRYD +R G   RASP
Sbjct: 14  TELASEIFSRTTIDQLVNWARQSSLWPLSFGLACCAVEMMQVSMPRYDQDRLGIIFRASP 73

Query: 91  RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150
           RQSDVM+VAGT+TNKM  ALR+ YDQMP+P++VISMGSCANGGGYYHYSYSVVRG DRIV
Sbjct: 74  RQSDVMVVAGTVTNKMGPALRQCYDQMPDPKWVISMGSCANGGGYYHYSYSVVRGVDRIV 133

Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           PVD+Y+PGCPPT EA + GI  LQKK+R     +
Sbjct: 134 PVDVYIPGCPPTPEAFLCGIFQLQKKMRHTKVTR 167


>gi|56707212|ref|YP_169108.1| NADH dehydrogenase subunit B [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|89257089|ref|YP_514451.1| NADH dehydrogenase subunit B [Francisella tularensis subsp.
           holarctica LVS]
 gi|110669682|ref|YP_666239.1| NADH dehydrogenase subunit B [Francisella tularensis subsp.
           tularensis FSC198]
 gi|115315446|ref|YP_764169.1| NADH dehydrogenase subunit B [Francisella tularensis subsp.
           holarctica OSU18]
 gi|118498240|ref|YP_899290.1| NADH dehydrogenase subunit B [Francisella tularensis subsp.
           novicida U112]
 gi|134301247|ref|YP_001121215.1| NADH dehydrogenase subunit B [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|156503303|ref|YP_001429368.1| NADH dehydrogenase subunit B [Francisella tularensis subsp.
           holarctica FTNF002-00]
 gi|167009481|ref|ZP_02274412.1| NADH-quinone oxidoreductase, b subunit family protein [Francisella
           tularensis subsp. holarctica FSC200]
 gi|187930989|ref|YP_001890973.1| NADH dehydrogenase subunit B [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|194324424|ref|ZP_03058197.1| NADH-quinone oxidoreductase, b subunit family [Francisella
           tularensis subsp. novicida FTE]
 gi|208780267|ref|ZP_03247609.1| NADH-quinone oxidoreductase, b subunit family [Francisella novicida
           FTG]
 gi|224456273|ref|ZP_03664746.1| NADH dehydrogenase subunit B [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|241667716|ref|ZP_04755294.1| NADH dehydrogenase subunit B [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254368325|ref|ZP_04984343.1| NADH dehydrogenase I, B subunit [Francisella tularensis subsp.
           holarctica 257]
 gi|254368966|ref|ZP_04984979.1| NADH-quinone oxidoreductase chain B 1 [Francisella tularensis
           subsp. holarctica FSC022]
 gi|254371428|ref|ZP_04987429.1| hypothetical protein [Francisella tularensis subsp. tularensis
           FSC033]
 gi|254373581|ref|ZP_04989067.1| NADH dehydrogenase I [Francisella tularensis subsp. novicida
           GA99-3549]
 gi|254375048|ref|ZP_04990528.1| hypothetical protein FTDG_01236 [Francisella novicida GA99-3548]
 gi|254874050|ref|ZP_05246760.1| NADH-quinone oxidoreductase chain B 1 [Francisella tularensis
           subsp. tularensis MA00-2987]
 gi|254876260|ref|ZP_05248970.1| NADH-quinone oxidoreductase subunit B [Francisella philomiragia
           subsp. philomiragia ATCC 25015]
 gi|290952990|ref|ZP_06557611.1| NADH dehydrogenase subunit B [Francisella tularensis subsp.
           holarctica URFT1]
 gi|295313810|ref|ZP_06804383.1| NADH dehydrogenase subunit B [Francisella tularensis subsp.
           holarctica URFT1]
 gi|81598108|sp|Q5NIN4|NUOB_FRATT RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|122324569|sp|Q0BK52|NUOB_FRATO RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|122500210|sp|Q2A1F1|NUOB_FRATH RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|123169705|sp|Q14K37|NUOB_FRAT1 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|238065148|sp|A7NEK9|NUOB_FRATF RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|238065149|sp|A0Q8H1|NUOB_FRATN RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|238065150|sp|A4IVZ3|NUOB_FRATW RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|254767793|sp|B2SEV0|NUOB_FRATM RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|54114093|gb|AAV29680.1| NT02FT1737 [synthetic construct]
 gi|56603704|emb|CAG44665.1| NADH dehydrogenase I, B subunit [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|89144920|emb|CAJ80268.1| NADH dehydrogenase I, B subunit [Francisella tularensis subsp.
           holarctica LVS]
 gi|110320015|emb|CAL08048.1| NADH dehydrogenase I, B subunit [Francisella tularensis subsp.
           tularensis FSC198]
 gi|115130345|gb|ABI83532.1| NADH dehydrogenase (ubiquinone) [Francisella tularensis subsp.
           holarctica OSU18]
 gi|118424146|gb|ABK90536.1| NADH dehydrogenase I, B subunit [Francisella novicida U112]
 gi|134049024|gb|ABO46095.1| NADH dehydrogenase I subunit B [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|134254133|gb|EBA53227.1| NADH dehydrogenase I, B subunit [Francisella tularensis subsp.
           holarctica 257]
 gi|151569667|gb|EDN35321.1| hypothetical protein FTBG_01489 [Francisella tularensis subsp.
           tularensis FSC033]
 gi|151571305|gb|EDN36959.1| NADH dehydrogenase I [Francisella novicida GA99-3549]
 gi|151572766|gb|EDN38420.1| hypothetical protein FTDG_01236 [Francisella novicida GA99-3548]
 gi|156253906|gb|ABU62412.1| NADH-quinone oxidoreductase, subunit B [Francisella tularensis
           subsp. holarctica FTNF002-00]
 gi|157121887|gb|EDO66057.1| NADH-quinone oxidoreductase chain B 1 [Francisella tularensis
           subsp. holarctica FSC022]
 gi|187711898|gb|ACD30195.1| NADH dehydrogenase I, B subunit [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|194321489|gb|EDX18974.1| NADH-quinone oxidoreductase, b subunit family [Francisella
           tularensis subsp. novicida FTE]
 gi|208743916|gb|EDZ90218.1| NADH-quinone oxidoreductase, b subunit family [Francisella novicida
           FTG]
 gi|254840049|gb|EET18485.1| NADH-quinone oxidoreductase chain B 1 [Francisella tularensis
           subsp. tularensis MA00-2987]
 gi|254842281|gb|EET20695.1| NADH-quinone oxidoreductase subunit B [Francisella philomiragia
           subsp. philomiragia ATCC 25015]
 gi|282158320|gb|ADA77711.1| NADH dehydrogenase subunit B [Francisella tularensis subsp.
           tularensis NE061598]
 gi|332184795|gb|AEE27049.1| NADH-ubiquinone oxidoreductase chain B [Francisella cf. novicida
           3523]
 gi|332678976|gb|AEE88105.1| NADH-ubiquinone oxidoreductase chain B [Francisella cf. novicida
           Fx1]
          Length = 158

 Score =  235 bits (599), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 111/150 (74%), Positives = 124/150 (82%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
            +KGF+  S D L+ W RTGSL  +T GLACCAVEMM A   RYDL+RFG   R SPRQS
Sbjct: 6   ENKGFITASADALINWVRTGSLWPVTTGLACCAVEMMHAGAARYDLDRFGIVFRPSPRQS 65

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD 153
           DV+IVAGTL NKMA ALR+VYDQMP+P++VISMGSCANGGGYYHYSYSVVRGCDRIVPVD
Sbjct: 66  DVLIVAGTLCNKMAPALRQVYDQMPDPKWVISMGSCANGGGYYHYSYSVVRGCDRIVPVD 125

Query: 154 IYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           IYVPGCPPTAEAL+YGI+ LQ KI R   +
Sbjct: 126 IYVPGCPPTAEALVYGIIQLQNKIIRKDTI 155


>gi|295697422|ref|YP_003590660.1| NADH-quinone oxidoreductase, B subunit [Bacillus tusciae DSM 2912]
 gi|295413024|gb|ADG07516.1| NADH-quinone oxidoreductase, B subunit [Bacillus tusciae DSM 2912]
          Length = 177

 Score =  235 bits (599), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 85/151 (56%), Positives = 115/151 (76%)

Query: 28  RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
           ++  +   +  ++T+++++  WAR+ S+  ++FGLACCA+EMM  S   YD +RFG   R
Sbjct: 13  QLEEKELERNVVLTTLEKVKAWARSNSMWPLSFGLACCAIEMMATSGSHYDADRFGVFFR 72

Query: 88  ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCD 147
           ASPRQ+D+MIV+GT+T KMA  LRR+YDQM EPR+VI+MGSCA  GG Y  SYSVV G D
Sbjct: 73  ASPRQADLMIVSGTVTKKMAPLLRRLYDQMAEPRWVIAMGSCATAGGPYVRSYSVVNGVD 132

Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           +IVPVD+Y+PGCPP+  ALIYG+  LQ+KIR
Sbjct: 133 QIVPVDVYIPGCPPSPVALIYGLNKLQEKIR 163


>gi|71023639|ref|XP_762049.1| hypothetical protein UM05902.1 [Ustilago maydis 521]
 gi|46101614|gb|EAK86847.1| hypothetical protein UM05902.1 [Ustilago maydis 521]
          Length = 228

 Score =  235 bits (599), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 110/159 (69%), Positives = 127/159 (79%), Gaps = 2/159 (1%)

Query: 27  SRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF 84
           +++S E    G  ++++S+D++  WAR  S   MTFGLACCAVEMM  +  RYD +R G 
Sbjct: 64  NQLSLETPKNGVEYVLSSMDKMANWARQSSFWPMTFGLACCAVEMMHVATARYDQDRLGV 123

Query: 85  APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR 144
             RASPRQSD MIVAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVR
Sbjct: 124 VFRASPRQSDCMIVAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVR 183

Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           GCDRIVPVD+YVPGCPPTAEAL+YG L L +KIRR    
Sbjct: 184 GCDRIVPVDLYVPGCPPTAEALLYGFLQLHRKIRRNRKT 222


>gi|281202313|gb|EFA76518.1| NADH-ubiquinone oxidoreductase 20 kDa subunit [Polysphondylium
           pallidum PN500]
          Length = 178

 Score =  235 bits (599), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 115/171 (67%), Positives = 133/171 (77%)

Query: 13  GQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQA 72
            Q+   L K+ A   + +   +    +++ +D LV WARTGSL  MTFGLACCAVEMM  
Sbjct: 2   AQAGQHLSKLLASSFKAAPPSSVPEIVISKLDGLVNWARTGSLWPMTFGLACCAVEMMHG 61

Query: 73  SMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANG 132
              RYDL+RFG  PRASPRQSD +IVAGTLTNKMA ALR+VYDQMP PRYVISMGSCANG
Sbjct: 62  YAARYDLDRFGIIPRASPRQSDCIIVAGTLTNKMAPALRKVYDQMPLPRYVISMGSCANG 121

Query: 133 GGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           GGYYHYSYSVVRGCDRI+PVD+Y+PGCPPTAEA +YG+L LQKKI R   +
Sbjct: 122 GGYYHYSYSVVRGCDRIIPVDVYIPGCPPTAEAFVYGVLQLQKKINREQAL 172


>gi|33592008|ref|NP_879652.1| NADH dehydrogenase subunit B [Bordetella pertussis Tohama I]
 gi|33597910|ref|NP_885553.1| NADH dehydrogenase subunit B [Bordetella parapertussis 12822]
 gi|33602815|ref|NP_890375.1| NADH dehydrogenase subunit B [Bordetella bronchiseptica RB50]
 gi|81425363|sp|Q7VZQ4|NUOB_BORPE RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|81426432|sp|Q7W5A8|NUOB_BORPA RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|81429887|sp|Q7WCU0|NUOB_BORBR RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|33571652|emb|CAE41145.1| NADH-ubiquinone oxidoreductase, 20 kDa subunit [Bordetella
           pertussis Tohama I]
 gi|33574339|emb|CAE38675.1| NADH-ubiquinone oxidoreductase, 20 kDa subunit [Bordetella
           parapertussis]
 gi|33577257|emb|CAE35814.1| NADH-ubiquinone oxidoreductase, 20 kDa subunit [Bordetella
           bronchiseptica RB50]
 gi|332381424|gb|AEE66271.1| NADH dehydrogenase subunit B [Bordetella pertussis CS]
          Length = 158

 Score =  235 bits (599), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 109/151 (72%), Positives = 126/151 (83%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           I  +GF+ TS D+ + WA+TGS+  MTFGLACCAVEMM A   RYDL++FG   R SPRQ
Sbjct: 6   ILKQGFITTSADKFLNWAKTGSMWPMTFGLACCAVEMMHAGAARYDLDQFGIIFRPSPRQ 65

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           SD+MIVAGTL NKM  ALR+VYDQMPEPR+V+SMGSCANGGGYYHYSYSVVRGCDRIVPV
Sbjct: 66  SDLMIVAGTLCNKMGPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIVPV 125

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           D+YVPGCPPTAEAL+YG+L +Q KIR    +
Sbjct: 126 DVYVPGCPPTAEALVYGLLQMQNKIRLTNTI 156


>gi|302928116|ref|XP_003054637.1| hypothetical protein NECHADRAFT_73438 [Nectria haematococca mpVI
           77-13-4]
 gi|256735578|gb|EEU48924.1| hypothetical protein NECHADRAFT_73438 [Nectria haematococca mpVI
           77-13-4]
          Length = 221

 Score =  234 bits (598), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 108/180 (60%), Positives = 131/180 (72%), Gaps = 1/180 (0%)

Query: 5   TVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLAC 64
            ++QK  S  +  S     A  +          + +T++D++  WAR GS   +TFGLAC
Sbjct: 37  PIDQKRRSSNNDSSHPH-PAALTADVKPRDVMEYALTTLDKIAAWARNGSFWPLTFGLAC 95

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +EMM  SMPRYD +R G   RASPRQSDVMIVAGT+TNKMA+A+R  YDQMPEPR+VI
Sbjct: 96  CGIEMMHVSMPRYDQDRLGIIFRASPRQSDVMIVAGTVTNKMATAVRLCYDQMPEPRWVI 155

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           SMGSCANGGGYYHYSYSV+RG DRI+PVDIYVPGCPPTAEAL+YG+  LQ+KIR     +
Sbjct: 156 SMGSCANGGGYYHYSYSVLRGVDRILPVDIYVPGCPPTAEALMYGVFQLQRKIRNTRQSR 215


>gi|50423781|ref|XP_460475.1| DEHA2F02552p [Debaryomyces hansenii CBS767]
 gi|49656144|emb|CAG88782.1| DEHA2F02552p [Debaryomyces hansenii]
          Length = 208

 Score =  234 bits (598), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 105/169 (62%), Positives = 129/169 (76%), Gaps = 2/169 (1%)

Query: 18  SLEKVDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMP 75
           + + +  DF  +S +       + +TS+D +  WAR  S   +TFGLACCAVEMM  S P
Sbjct: 35  TPKPLATDFPLMSQKTASAPVDYALTSLDAIANWARKSSFWPVTFGLACCAVEMMHVSTP 94

Query: 76  RYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY 135
           RYD +R G   RASPRQSD+MIVAGT+TNKMA ALR+VYDQM +PR+VISMGSCANGGGY
Sbjct: 95  RYDQDRLGIIFRASPRQSDIMIVAGTVTNKMAPALRQVYDQMADPRWVISMGSCANGGGY 154

Query: 136 YHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           YHYSYSVVRGCDR++PVD+YVPGCPPTAEAL+YG+  LQKK+ +    +
Sbjct: 155 YHYSYSVVRGCDRLIPVDVYVPGCPPTAEALMYGVFQLQKKMMKTRITR 203


>gi|206889652|ref|YP_002248950.1| NADH-quinone oxidoreductase chain b 2 [Thermodesulfovibrio
           yellowstonii DSM 11347]
 gi|238065044|sp|B5YL35|NUOB2_THEYD RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName:
           Full=NADH dehydrogenase I subunit B 2; AltName:
           Full=NDH-1 subunit B 2
 gi|206741590|gb|ACI20647.1| NADH-quinone oxidoreductase chain b 2 [Thermodesulfovibrio
           yellowstonii DSM 11347]
          Length = 174

 Score =  234 bits (597), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 86/162 (53%), Positives = 118/162 (72%), Gaps = 1/162 (0%)

Query: 20  EKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDL 79
           +K   +    +  I     ++T++D++V W R+ SL  +TFGLACCA+EMM A     DL
Sbjct: 7   DKQLIEVEEGTKIIKGSNVIITTLDKVVNWGRSNSLWPLTFGLACCAIEMMAAGASHLDL 66

Query: 80  ERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS 139
           +RFG   RASPRQ+DV+I+AGT+T KMA  ++RVYDQMPEP+YVI+MGSCA  GG ++ +
Sbjct: 67  DRFGILFRASPRQADVIIIAGTVTYKMAPIVKRVYDQMPEPKYVIAMGSCACTGGIFN-T 125

Query: 140 YSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
           YS V+G D+ +PVD+YVPGCPP  EAL+YG+L L++KI R  
Sbjct: 126 YSTVQGADQFLPVDVYVPGCPPRPEALMYGVLKLKEKIMREE 167


>gi|66809217|ref|XP_638331.1| NADH-ubiquinone oxidoreductase 20 kDa subunit [Dictyostelium
           discoideum AX4]
 gi|74853922|sp|Q54NI6|NDUS7_DICDI RecName: Full=NADH dehydrogenase [ubiquinone] iron-sulfur protein
           7, mitochondrial; Flags: Precursor
 gi|60466783|gb|EAL64831.1| NADH-ubiquinone oxidoreductase 20 kDa subunit [Dictyostelium
           discoideum AX4]
          Length = 178

 Score =  234 bits (597), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 116/171 (67%), Positives = 135/171 (78%)

Query: 13  GQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQA 72
             ++  L K+ A   + +   T    +++ +D LV WARTGSL  MTFGLACCAVEMMQ 
Sbjct: 2   AHNAQHLSKLLASSFKQAPPNTLPEVVISKIDGLVNWARTGSLWPMTFGLACCAVEMMQG 61

Query: 73  SMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANG 132
              RYD++RFG  PRASPRQSD +IVAGTLTNKMA ALR+VYDQMP PRYV+SMGSCANG
Sbjct: 62  YAARYDMDRFGVIPRASPRQSDCIIVAGTLTNKMAPALRKVYDQMPNPRYVVSMGSCANG 121

Query: 133 GGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           GGYYHYSYSVVRGCDRI+PVD+Y+PGCPPTAEA +YGIL LQKKI R  N+
Sbjct: 122 GGYYHYSYSVVRGCDRIIPVDVYIPGCPPTAEAFVYGILQLQKKIGREQNL 172


>gi|197120286|ref|YP_002140713.1| NADH dehydrogenase I subunit B [Geobacter bemidjiensis Bem]
 gi|238065151|sp|B5EFG2|NUOB_GEOBB RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|197089646|gb|ACH40917.1| NADH dehydrogenase I, B subunit [Geobacter bemidjiensis Bem]
          Length = 170

 Score =  234 bits (596), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 80/152 (52%), Positives = 109/152 (71%), Gaps = 1/152 (0%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP 90
            +   +  + TS+D LV WAR  S+  MTFGLACCA+EMM     ++DL+RFG   RASP
Sbjct: 4   DQPLGENIITTSLDSLVNWARKSSIWPMTFGLACCAIEMMATGAAKHDLDRFGIIFRASP 63

Query: 91  RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150
           RQ+D +I+AGT+T KM   ++ VY+QMPEP++V++MG+CA  GG +  +YSVV+G D  +
Sbjct: 64  RQADCIIIAGTVTKKMLPVIKTVYEQMPEPKWVVAMGACACSGGVF-DTYSVVQGIDEAL 122

Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
           PVD+Y+PGCPP  EAL+YG+L LQ KI    N
Sbjct: 123 PVDVYIPGCPPRPEALLYGLLKLQDKIANERN 154


>gi|307611657|emb|CBX01348.1| NADH dehydrogenase I chain B [Legionella pneumophila 130b]
          Length = 146

 Score =  233 bits (595), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 112/140 (80%), Positives = 124/140 (88%)

Query: 40  VTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVA 99
           +T+V++LV WAR+GS+  MTFGLACCAVEMM     RYDL+RFG   R SPRQSDVMIVA
Sbjct: 1   MTTVEKLVGWARSGSMWPMTFGLACCAVEMMHVGAARYDLDRFGIIFRPSPRQSDVMIVA 60

Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGC 159
           GTL NKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVD+YVPGC
Sbjct: 61  GTLCNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGC 120

Query: 160 PPTAEALIYGILLLQKKIRR 179
           PPTAEAL+YGI+ LQ KIRR
Sbjct: 121 PPTAEALLYGIIQLQNKIRR 140


>gi|138896932|ref|YP_001127385.1| NADH dehydrogenase subunit B [Geobacillus thermodenitrificans
           NG80-2]
 gi|238065154|sp|A4ITI6|NUOB_GEOTN RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|134268445|gb|ABO68640.1| NADH-quinone oxidoreductase chain B [Geobacillus
           thermodenitrificans NG80-2]
          Length = 170

 Score =  233 bits (595), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 92/147 (62%), Positives = 112/147 (76%)

Query: 32  EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPR 91
           E   +    T+++QL  WAR+ SL  +TFGLACCA+EMM      YDL+RFG   RASPR
Sbjct: 14  EEVKRNVFFTTLEQLKGWARSNSLWPLTFGLACCAIEMMAVGGAHYDLDRFGSFFRASPR 73

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
           QSDVMIV+GT+T KMA  LRR+YDQMPEP++VI+MGSCA  GG Y  SYSVV+G D+IVP
Sbjct: 74  QSDVMIVSGTVTKKMAPLLRRLYDQMPEPKWVIAMGSCATAGGPYVKSYSVVKGVDQIVP 133

Query: 152 VDIYVPGCPPTAEALIYGILLLQKKIR 178
           VD+Y+PGCPP   ALIYGI  L++KIR
Sbjct: 134 VDVYIPGCPPNPAALIYGIHKLKEKIR 160


>gi|39995448|ref|NP_951399.1| NADH dehydrogenase I subunit B [Geobacter sulfurreducens PCA]
 gi|81703477|sp|Q74GA7|NUOB_GEOSL RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|39982211|gb|AAR33672.1| NADH dehydrogenase I, B subunit [Geobacter sulfurreducens PCA]
 gi|298504447|gb|ADI83170.1| NADH dehydrogenase I, B subunit [Geobacter sulfurreducens KN400]
          Length = 170

 Score =  233 bits (595), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 82/152 (53%), Positives = 108/152 (71%), Gaps = 1/152 (0%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP 90
            +     F+ TS+D LV WAR  S+  MTFGLACCA+EMM       DL+RFG   RASP
Sbjct: 4   DQPLGDNFITTSLDSLVNWARKSSIWPMTFGLACCAIEMMATGASHNDLDRFGIIFRASP 63

Query: 91  RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150
           RQSD +I+AGT+T KM   ++ VY+QMPEP++V++MG+CA  GG +  +YSVV+G D  +
Sbjct: 64  RQSDCIIIAGTVTKKMLPVIKTVYEQMPEPKWVVAMGACACSGGVF-DTYSVVQGIDTAL 122

Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
           PVD+Y+PGCPP  EAL+YG+L LQ KI +  N
Sbjct: 123 PVDVYIPGCPPRPEALLYGLLKLQDKIMKDKN 154


>gi|226315029|ref|YP_002774925.1| NADH dehydrogenase subunit B [Brevibacillus brevis NBRC 100599]
 gi|259514656|sp|C0Z772|NUOB_BREBN RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|226097979|dbj|BAH46421.1| NADH-quinone oxidoreductase chain B [Brevibacillus brevis NBRC
           100599]
          Length = 172

 Score =  233 bits (595), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 92/148 (62%), Positives = 113/148 (76%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP 90
            E  ++  + T+++ +  W R+ SL  +TFGLACCA+EMM     RYDL+RFG   RASP
Sbjct: 13  QEELNRNVMFTTLETVKGWVRSNSLWPLTFGLACCAIEMMGTGGARYDLDRFGVIFRASP 72

Query: 91  RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150
           RQSDVMIVAGT+T KMA  LRR+YDQMPEP++VI+MGSCA  GG Y  SYSVV+G D+IV
Sbjct: 73  RQSDVMIVAGTVTKKMAPLLRRLYDQMPEPKWVIAMGSCATAGGPYVRSYSVVKGVDQIV 132

Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIR 178
           PVD+Y+PGCPP   ALIYGI  LQ+KIR
Sbjct: 133 PVDVYIPGCPPNPAALIYGINKLQEKIR 160


>gi|332528752|ref|ZP_08404729.1| NADH dehydrogenase subunit B [Hylemonella gracilis ATCC 19624]
 gi|332041818|gb|EGI78167.1| NADH dehydrogenase subunit B [Hylemonella gracilis ATCC 19624]
          Length = 159

 Score =  233 bits (595), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 114/152 (75%), Positives = 129/152 (84%), Gaps = 1/152 (0%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPR 91
           +  +GF+ TS D +V WA+TGSL  MTFGLACCAVEMM A+  RYD+ RFG    RASPR
Sbjct: 5   VLKEGFVTTSYDTVVNWAKTGSLWPMTFGLACCAVEMMHAAAARYDIARFGSEVFRASPR 64

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
           QSD+MIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVP
Sbjct: 65  QSDLMIVAGTLCNKMAPALRKVYDQMSEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVP 124

Query: 152 VDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           VD+YVPGCPPTAEALIYGI+ LQ+K+RR   +
Sbjct: 125 VDVYVPGCPPTAEALIYGIIQLQQKVRRTQTI 156


>gi|241763289|ref|ZP_04761346.1| NADH-quinone oxidoreductase, B subunit [Acidovorax delafieldii 2AN]
 gi|241367564|gb|EER61851.1| NADH-quinone oxidoreductase, B subunit [Acidovorax delafieldii 2AN]
          Length = 159

 Score =  233 bits (595), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 114/152 (75%), Positives = 129/152 (84%), Gaps = 1/152 (0%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPR 91
           +  +GF+ TS D +V WA+TGSL  MTFGLACCAVEMM A+  RYD+ RFG    RASPR
Sbjct: 5   VMKEGFITTSYDSVVNWAKTGSLWPMTFGLACCAVEMMHAAAARYDIGRFGAEVFRASPR 64

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
           QSD+MIVAGTL NKMA ALR+VYDQM EPR+V+SMGSCANGGGYYHYSYSVVRGCDRIVP
Sbjct: 65  QSDLMIVAGTLCNKMAPALRKVYDQMSEPRWVLSMGSCANGGGYYHYSYSVVRGCDRIVP 124

Query: 152 VDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           VD+YVPGCPPTAEALIYGI+ LQ+KIRR   +
Sbjct: 125 VDVYVPGCPPTAEALIYGIIQLQQKIRRTNTI 156


>gi|222475044|ref|YP_002563459.1| NADH dehydrogenase I chain B (nuoB) [Anaplasma marginale str.
           Florida]
 gi|238065053|sp|B9KI91|NUOB_ANAMF RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|222419180|gb|ACM49203.1| NADH dehydrogenase I chain B (nuoB) [Anaplasma marginale str.
           Florida]
          Length = 190

 Score =  233 bits (595), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 116/149 (77%), Positives = 128/149 (85%), Gaps = 4/149 (2%)

Query: 35  HKGFLVTS----VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP 90
            +GF+VT     VD +V W+R+GSL  MTFGLACCAVEMM  +  RYDL+R+G   RASP
Sbjct: 34  DRGFVVTKFSDLVDSVVRWSRSGSLWPMTFGLACCAVEMMHTAASRYDLDRYGVMFRASP 93

Query: 91  RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150
           RQ+DVMIVAGTLTNKMA ALRRVYDQM EP+YVISMGSCANGGGYYHYSYSVVRGCDRIV
Sbjct: 94  RQADVMIVAGTLTNKMAPALRRVYDQMAEPKYVISMGSCANGGGYYHYSYSVVRGCDRIV 153

Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           PVDIYVPGCPPTAEAL+YGIL LQ+KI R
Sbjct: 154 PVDIYVPGCPPTAEALLYGILCLQQKIIR 182


>gi|121593378|ref|YP_985274.1| NADH dehydrogenase subunit B [Acidovorax sp. JS42]
 gi|222110087|ref|YP_002552351.1| NADH dehydrogenase subunit b [Acidovorax ebreus TPSY]
 gi|218527972|sp|A1W4M3|NUOB_ACISJ RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|238065124|sp|B9MEL5|NUOB_DIAST RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|120605458|gb|ABM41198.1| NADH dehydrogenase subunit B [Acidovorax sp. JS42]
 gi|221729531|gb|ACM32351.1| NADH-quinone oxidoreductase, B subunit [Acidovorax ebreus TPSY]
          Length = 159

 Score =  233 bits (595), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 116/152 (76%), Positives = 129/152 (84%), Gaps = 1/152 (0%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPR 91
           +  +GF+ TS D +V WA+TGSL  MTFGLACCAVEMM A+  RYDL RFG    RASPR
Sbjct: 5   VMKEGFITTSYDSVVNWAKTGSLWPMTFGLACCAVEMMHAAAARYDLGRFGAEVFRASPR 64

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
           QSD+MIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVP
Sbjct: 65  QSDLMIVAGTLCNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVP 124

Query: 152 VDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           VD+YVPGCPPTAEALIYGI+ LQ+KIRR   +
Sbjct: 125 VDVYVPGCPPTAEALIYGIIQLQQKIRRTHTI 156


>gi|196249749|ref|ZP_03148445.1| NADH-quinone oxidoreductase, B subunit [Geobacillus sp. G11MC16]
 gi|196210625|gb|EDY05388.1| NADH-quinone oxidoreductase, B subunit [Geobacillus sp. G11MC16]
          Length = 170

 Score =  233 bits (595), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 92/147 (62%), Positives = 112/147 (76%)

Query: 32  EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPR 91
           E   +    T+++QL  WAR+ SL  +TFGLACCA+EMM      YDL+RFG   RASPR
Sbjct: 14  EEVKRNVFFTTLEQLKGWARSNSLWPLTFGLACCAIEMMAVGGAHYDLDRFGSFFRASPR 73

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
           QSDVMIV+GT+T KMA  LRR+YDQMPEP++VI+MGSCA  GG Y  SYSVV+G D+IVP
Sbjct: 74  QSDVMIVSGTVTKKMAPLLRRLYDQMPEPKWVIAMGSCATAGGPYVKSYSVVKGVDQIVP 133

Query: 152 VDIYVPGCPPTAEALIYGILLLQKKIR 178
           VD+Y+PGCPP   ALIYGI  L++KIR
Sbjct: 134 VDVYIPGCPPNPAALIYGIHKLKEKIR 160


>gi|242765656|ref|XP_002341019.1| NADH-ubiquinone oxidoreductase subunit B, putative [Talaromyces
           stipitatus ATCC 10500]
 gi|218724215|gb|EED23632.1| NADH-ubiquinone oxidoreductase subunit B, putative [Talaromyces
           stipitatus ATCC 10500]
          Length = 247

 Score =  233 bits (594), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 117/207 (56%), Positives = 136/207 (65%), Gaps = 23/207 (11%)

Query: 1   MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWM 58
           M  + + ++     S  +  KV  +    S E       + +T++DQ+  WAR  SL  M
Sbjct: 36  MPASAIERQSEPSSSLTASGKVRREVPLPSQEKKEGAMQYALTTLDQIANWARQSSLWPM 95

Query: 59  TFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMP 118
           TFGLACCAVEMM  S PRYD +R G   RASPRQSDVMIVAGTLTNKMA ALR+VYDQMP
Sbjct: 96  TFGLACCAVEMMHLSTPRYDQDRLGIIFRASPRQSDVMIVAGTLTNKMAPALRQVYDQMP 155

Query: 119 EPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGC------------------- 159
           +PR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGC                   
Sbjct: 156 DPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCKFDILLMLKLSLILIERHL 215

Query: 160 --PPTAEALIYGILLLQKKIRRVGNVK 184
             PPT+EAL+YGI  LQKK+R     +
Sbjct: 216 KGPPTSEALMYGIFQLQKKMRHTKITR 242


>gi|291613539|ref|YP_003523696.1| NADH-quinone oxidoreductase, B subunit [Sideroxydans lithotrophicus
           ES-1]
 gi|291583651|gb|ADE11309.1| NADH-quinone oxidoreductase, B subunit [Sideroxydans lithotrophicus
           ES-1]
          Length = 159

 Score =  233 bits (594), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 116/152 (76%), Positives = 130/152 (85%), Gaps = 1/152 (0%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APRASPR 91
           +  KGF+ TS D ++ + RTGSL  MTFGLACCAVEMM A++PRYDL+RFG  A R SPR
Sbjct: 6   VLEKGFITTSADTVINYVRTGSLWPMTFGLACCAVEMMHAALPRYDLDRFGAGAFRPSPR 65

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
           QSDVMIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVP
Sbjct: 66  QSDVMIVAGTLCNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVP 125

Query: 152 VDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           VDIYVPGCPPTAEAL+YGI+ LQ KI+R   +
Sbjct: 126 VDIYVPGCPPTAEALLYGIIQLQNKIKRTNTI 157


>gi|256088165|ref|XP_002580226.1| NADH-plastoquinone oxidoreductase [Schistosoma mansoni]
 gi|238665746|emb|CAZ36465.1| NADH-plastoquinone oxidoreductase, putative [Schistosoma mansoni]
          Length = 207

 Score =  233 bits (594), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 102/180 (56%), Positives = 130/180 (72%), Gaps = 3/180 (1%)

Query: 5   TVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLAC 64
                 +         K  + F +   +I    +++T +D L  WAR  S+  +TFGLAC
Sbjct: 26  PSQPSKVDSSDESIPFKPYSPFPKPQGKID---YVITRLDDLADWARKNSIYPLTFGLAC 82

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           CAVEMM  + PRYD++R+G   RASPRQ+D++IV+GT+TNKMA AL R+Y QM +P++VI
Sbjct: 83  CAVEMMHIAGPRYDMDRYGVVFRASPRQADLLIVSGTVTNKMAPALHRIYSQMTQPKWVI 142

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           SMGSCANGGGYYHYSYSVVRGCDRI+PVDIYVPGCPP+AEAL+Y IL LQKKI+   + K
Sbjct: 143 SMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPSAEALMYSILQLQKKIKSEKHFK 202


>gi|91083385|ref|XP_967426.1| PREDICTED: similar to NADH-ubiquinone oxidoreductase, partial
           [Tribolium castaneum]
          Length = 227

 Score =  233 bits (594), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 104/167 (62%), Positives = 133/167 (79%), Gaps = 4/167 (2%)

Query: 11  ISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMM 70
           I  +S+C   +  + F   +       +++  +D L+ W R  S+  +TFGLACCA+EMM
Sbjct: 20  IRCESTCPERRPYSPFRPKNQT----EWVLARLDDLLNWGRKTSMWPLTFGLACCAIEMM 75

Query: 71  QASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCA 130
             + PRYD++R+G   RASPRQ++V+IVAGT+TNKMA++LR+VYDQMPEPR+VISMGSCA
Sbjct: 76  HIAAPRYDMDRYGVVFRASPRQTEVIIVAGTVTNKMAASLRKVYDQMPEPRWVISMGSCA 135

Query: 131 NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
           NGGGYYHYSYSVVRGC+RI+PVDIYVPGCPPTAEAL+YGIL LQKK+
Sbjct: 136 NGGGYYHYSYSVVRGCNRIIPVDIYVPGCPPTAEALMYGILQLQKKV 182


>gi|160900611|ref|YP_001566193.1| NADH dehydrogenase subunit B [Delftia acidovorans SPH-1]
 gi|218527988|sp|A9BNB3|NUOB_DELAS RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|160366195|gb|ABX37808.1| NADH-quinone oxidoreductase, B subunit [Delftia acidovorans SPH-1]
          Length = 159

 Score =  233 bits (594), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 114/152 (75%), Positives = 129/152 (84%), Gaps = 1/152 (0%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPR 91
           +  +GF+ TS D +V WA+TGSL  MTFGLACCAVEMM A+  RYD+ RFG    RASPR
Sbjct: 5   VMKEGFITTSYDSVVNWAKTGSLWPMTFGLACCAVEMMHAAAARYDIGRFGSEVFRASPR 64

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
           QSD+MIVAGTL NKMA A+R+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVP
Sbjct: 65  QSDLMIVAGTLCNKMAPAMRKVYDQMSEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVP 124

Query: 152 VDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           VD+YVPGCPPTAEALIYGI+ LQ+KIRR   +
Sbjct: 125 VDVYVPGCPPTAEALIYGIIQLQQKIRRTHTI 156


>gi|322421849|ref|YP_004201072.1| NADH-quinone oxidoreductase subunit B [Geobacter sp. M18]
 gi|320128236|gb|ADW15796.1| NADH-quinone oxidoreductase, B subunit [Geobacter sp. M18]
          Length = 170

 Score =  233 bits (594), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 80/152 (52%), Positives = 110/152 (72%), Gaps = 1/152 (0%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP 90
           ++      + TS+D LV WAR  S+  MTFGLACCA+EMM     ++DL+RFG   RASP
Sbjct: 4   NQPLGDNIITTSLDSLVNWARKSSIWPMTFGLACCAIEMMATGAAKHDLDRFGIIFRASP 63

Query: 91  RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150
           RQSD +I+AGT+T KM   ++ VY+QMPEP++V++MG+CA  GG +  +YSVV+G D  +
Sbjct: 64  RQSDCIIIAGTVTQKMLPVIKTVYEQMPEPKWVVAMGACACSGGVF-DTYSVVQGIDEAL 122

Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
           PVD+Y+PGCPP  EAL+YG++ LQ KI +  N
Sbjct: 123 PVDVYIPGCPPRPEALLYGLMKLQDKISKEKN 154


>gi|120609951|ref|YP_969629.1| NADH dehydrogenase subunit B [Acidovorax citrulli AAC00-1]
 gi|326316100|ref|YP_004233772.1| NAD(P)H-quinone oxidoreductase subunit K [Acidovorax avenae subsp.
           avenae ATCC 19860]
 gi|218527970|sp|A1TLL7|NUOB_ACIAC RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|120588415|gb|ABM31855.1| NADH dehydrogenase subunit B [Acidovorax citrulli AAC00-1]
 gi|323372936|gb|ADX45205.1| NAD(P)H-quinone oxidoreductase subunit K [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 159

 Score =  233 bits (594), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 115/152 (75%), Positives = 129/152 (84%), Gaps = 1/152 (0%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPR 91
           +  +GF+ TS D +V WA+TGSL  MTFGLACCAVEMM A+  RYD+ RFG    RASPR
Sbjct: 5   VMKEGFITTSYDSVVNWAKTGSLWPMTFGLACCAVEMMHAAAARYDIGRFGAEVFRASPR 64

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
           QSD+MIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVP
Sbjct: 65  QSDLMIVAGTLCNKMAPALRKVYDQMSEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVP 124

Query: 152 VDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           VD+YVPGCPPTAEALIYGI+ LQ+KIRR   +
Sbjct: 125 VDVYVPGCPPTAEALIYGIIQLQQKIRRTHTI 156


>gi|239828582|ref|YP_002951206.1| NADH dehydrogenase subunit B [Geobacillus sp. WCH70]
 gi|259514668|sp|C5D987|NUOB_GEOSW RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|239808875|gb|ACS25940.1| NADH-quinone oxidoreductase, B subunit [Geobacillus sp. WCH70]
          Length = 170

 Score =  232 bits (593), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 92/154 (59%), Positives = 114/154 (74%)

Query: 25  DFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF 84
           D     +E   +    T+++QL  WAR+ SL  +TFGLACCA+EMM      YDL+RFG 
Sbjct: 7   DVPEGDTEELKRNVFFTTLEQLKAWARSNSLWPLTFGLACCAIEMMGVGGAHYDLDRFGS 66

Query: 85  APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR 144
             RASPRQSDVMIV+GT+T KMA  +RR+YDQMPEP++VI+MGSCA  GG Y  SYSVV+
Sbjct: 67  FFRASPRQSDVMIVSGTVTKKMAPIIRRLYDQMPEPKWVIAMGSCATAGGPYVKSYSVVK 126

Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           G D+IVPVD+Y+PGCPP   ALIYGI  L++KIR
Sbjct: 127 GVDQIVPVDVYIPGCPPNPAALIYGINKLKEKIR 160


>gi|253702594|ref|YP_003023783.1| NADH-quinone oxidoreductase, B subunit [Geobacter sp. M21]
 gi|259514665|sp|C6E8N4|NUOB_GEOSM RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|251777444|gb|ACT20025.1| NADH-quinone oxidoreductase, B subunit [Geobacter sp. M21]
          Length = 170

 Score =  232 bits (593), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 79/152 (51%), Positives = 109/152 (71%), Gaps = 1/152 (0%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP 90
            +   +  + TS+D LV WAR  S+  MTFGLACCA+EMM     ++DL+RFG   RASP
Sbjct: 4   DQPLGENIITTSLDSLVNWARKSSIWPMTFGLACCAIEMMATGAAKHDLDRFGIIFRASP 63

Query: 91  RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150
           RQ+D +I+AGT+T KM   ++ VY+QMPEP++V++MG+CA  GG +  +YSVV+G D  +
Sbjct: 64  RQADCIIIAGTVTKKMLPVIKTVYEQMPEPKWVVAMGACACSGGVF-DTYSVVQGIDEAL 122

Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
           PVD+Y+PGCPP  EAL+YG++ LQ KI    N
Sbjct: 123 PVDVYIPGCPPRPEALLYGLMKLQDKIANERN 154


>gi|6689660|emb|CAB65525.1| subunit NUKM of protein NADH:Ubiquinone Oxidoreductase (Complex I)
           [Yarrowia lipolytica]
          Length = 210

 Score =  232 bits (593), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 109/175 (62%), Positives = 131/175 (74%), Gaps = 2/175 (1%)

Query: 12  SGQSSCSLEKVDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVEM 69
           +G    S   +  DF   S +  +    + +T++D +  WAR GS   +TFGLACCAVEM
Sbjct: 31  AGTPRVSSSSMPTDFPLPSQQKPNSAVDYTLTTLDAVANWARQGSFWPVTFGLACCAVEM 90

Query: 70  MQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSC 129
           M  S PRYD +R G   RASPRQSD+MIVAGTLTNKMA  LR+VYDQMPEPR+VISMGSC
Sbjct: 91  MHVSAPRYDQDRLGIIFRASPRQSDIMIVAGTLTNKMAPVLRQVYDQMPEPRWVISMGSC 150

Query: 130 ANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           ANGGGYYH+SYSVVRGCDRIVPVD+YVPGCPPT+EAL+YG+  LQ+K+R     +
Sbjct: 151 ANGGGYYHFSYSVVRGCDRIVPVDVYVPGCPPTSEALMYGVFQLQRKMRNTKITR 205


>gi|56416679|ref|YP_153753.1| NADH dehydrogenase subunit B [Anaplasma marginale str. St. Maries]
 gi|269958902|ref|YP_003328691.1| NADH dehydrogenase subunit B [Anaplasma centrale str. Israel]
 gi|81359162|sp|Q5PB32|NUOB_ANAMM RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|56387911|gb|AAV86498.1| NADH dehydrogenase I chain B [Anaplasma marginale str. St. Maries]
 gi|269848733|gb|ACZ49377.1| NADH dehydrogenase subunit B [Anaplasma centrale str. Israel]
          Length = 175

 Score =  232 bits (593), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 116/149 (77%), Positives = 128/149 (85%), Gaps = 4/149 (2%)

Query: 35  HKGFLVTS----VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP 90
            +GF+VT     VD +V W+R+GSL  MTFGLACCAVEMM  +  RYDL+R+G   RASP
Sbjct: 19  DRGFVVTKFSDLVDSVVRWSRSGSLWPMTFGLACCAVEMMHTAASRYDLDRYGVMFRASP 78

Query: 91  RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150
           RQ+DVMIVAGTLTNKMA ALRRVYDQM EP+YVISMGSCANGGGYYHYSYSVVRGCDRIV
Sbjct: 79  RQADVMIVAGTLTNKMAPALRRVYDQMAEPKYVISMGSCANGGGYYHYSYSVVRGCDRIV 138

Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           PVDIYVPGCPPTAEAL+YGIL LQ+KI R
Sbjct: 139 PVDIYVPGCPPTAEALLYGILCLQQKIIR 167


>gi|88607775|ref|YP_505115.1| NADH dehydrogenase subunit B [Anaplasma phagocytophilum HZ]
 gi|123495312|sp|Q2GKI6|NUOB_ANAPZ RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|88598838|gb|ABD44308.1| NADH dehydrogenase I, B subunit [Anaplasma phagocytophilum HZ]
          Length = 174

 Score =  232 bits (593), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 112/151 (74%), Positives = 130/151 (86%), Gaps = 4/151 (2%)

Query: 35  HKGFLVTS----VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP 90
            +GF+VT     +++++ WAR+GSL  MTFGLACCAVEMM  +  RYDL+R+G   RASP
Sbjct: 18  DQGFVVTQFSDLIERVLKWARSGSLWPMTFGLACCAVEMMHTAASRYDLDRYGIMFRASP 77

Query: 91  RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150
           RQ+DVMIVAGTLTNKMA ALRRVYDQM +P+YVISMGSCANGGGYYHYSYSVVRGCDR+V
Sbjct: 78  RQADVMIVAGTLTNKMAPALRRVYDQMADPKYVISMGSCANGGGYYHYSYSVVRGCDRVV 137

Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
           PVDIYVPGCPPTAEAL+YG+L LQ+KI R G
Sbjct: 138 PVDIYVPGCPPTAEALLYGLLCLQQKILRNG 168


>gi|319761763|ref|YP_004125700.1| NADH-quinone oxidoreductase, b subunit [Alicycliphilus
           denitrificans BC]
 gi|330826543|ref|YP_004389846.1| NADH-quinone oxidoreductase subunit B [Alicycliphilus denitrificans
           K601]
 gi|317116324|gb|ADU98812.1| NADH-quinone oxidoreductase, B subunit [Alicycliphilus
           denitrificans BC]
 gi|329311915|gb|AEB86330.1| NADH-quinone oxidoreductase, B subunit [Alicycliphilus
           denitrificans K601]
          Length = 159

 Score =  232 bits (592), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 114/152 (75%), Positives = 129/152 (84%), Gaps = 1/152 (0%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPR 91
           +  +GF+ TS D +V WA+TGSL  +TFGLACCAVEMM A+  RYDL RFG    RASPR
Sbjct: 5   VMKEGFVTTSYDAVVNWAKTGSLWPVTFGLACCAVEMMHAAAARYDLARFGAEVFRASPR 64

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
           QSD+MIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDR+VP
Sbjct: 65  QSDLMIVAGTLCNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRVVP 124

Query: 152 VDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           VD+YVPGCPPTAEALIYGI+ LQ+KIRR   +
Sbjct: 125 VDVYVPGCPPTAEALIYGIIQLQQKIRRTHTI 156


>gi|152977486|ref|YP_001377003.1| NADH dehydrogenase subunit B [Bacillus cereus subsp. cytotoxis NVH
           391-98]
 gi|238065062|sp|A7GV50|NUOB_BACCN RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|152026238|gb|ABS24008.1| NADH-quinone oxidoreductase, B subunit [Bacillus cytotoxicus NVH
           391-98]
          Length = 172

 Score =  232 bits (592), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 88/154 (57%), Positives = 111/154 (72%)

Query: 25  DFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF 84
           +          +    T+++Q+  WAR+ SL  MTFGLACCA+EMM      YDL+RFG 
Sbjct: 7   ELHPQEQAELERNIFFTTLEQIKGWARSNSLWPMTFGLACCAIEMMGVGSSHYDLDRFGS 66

Query: 85  APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR 144
             R SPRQSDVMIV+GT+T KMA  +RR+YDQMPEP++VI+MGSCA  GG Y  SY+VV+
Sbjct: 67  FFRTSPRQSDVMIVSGTVTKKMAPIVRRLYDQMPEPKWVIAMGSCATAGGPYVNSYAVVK 126

Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           G D+IVPVD+Y+PGCPP   ALIYGI  L++KIR
Sbjct: 127 GVDQIVPVDVYIPGCPPNPAALIYGINKLKEKIR 160


>gi|330794647|ref|XP_003285389.1| NADH dehydrogenase [Dictyostelium purpureum]
 gi|325084659|gb|EGC38082.1| NADH dehydrogenase [Dictyostelium purpureum]
          Length = 178

 Score =  231 bits (590), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 115/168 (68%), Positives = 133/168 (79%)

Query: 16  SCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMP 75
              L K+ A   + +        +++ +D LV WARTGSL  MTFGLACCAVEMMQ    
Sbjct: 5   GQHLSKLLASSFKAAPPNGMPEVVISKLDGLVNWARTGSLWPMTFGLACCAVEMMQGYAA 64

Query: 76  RYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY 135
           RYD++RFG  PRASPRQSD +IVAGTLTNKMA ALR+VYDQMP PRYV+SMGSCANGGGY
Sbjct: 65  RYDMDRFGVIPRASPRQSDCIIVAGTLTNKMAPALRKVYDQMPNPRYVVSMGSCANGGGY 124

Query: 136 YHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           YHYSYSVVRGCDRI+PVD+Y+PGCPPTAEA +YGIL LQKK+RR  N+
Sbjct: 125 YHYSYSVVRGCDRIIPVDVYMPGCPPTAEAFVYGILQLQKKMRREQNL 172


>gi|303237657|ref|ZP_07324217.1| putative NADH dehydrogenase subunit B [Prevotella disiens
           FB035-09AN]
 gi|302482109|gb|EFL45144.1| putative NADH dehydrogenase subunit B [Prevotella disiens
           FB035-09AN]
          Length = 288

 Score =  231 bits (590), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 77/161 (47%), Positives = 114/161 (70%), Gaps = 3/161 (1%)

Query: 21  KVDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78
           K +    ++++++   G   ++ ++DQL+ W R+ SL  +TF  +CC +E M     RYD
Sbjct: 17  KDNDTLEQMANDLNDGGTNLVLGNLDQLINWGRSNSLWSLTFATSCCGIEFMAVGCARYD 76

Query: 79  LERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137
             RFGF   R SPRQ+D+++ AGT+TNKMA AL+R+YDQM EP+YVI++G CA  GG + 
Sbjct: 77  FSRFGFEVTRNSPRQADLIMCAGTITNKMAPALKRLYDQMAEPKYVIAVGGCAISGGPFK 136

Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
            SY V+RG D I+PVD+Y+PGCPP  EA+IYG++ LQ+K++
Sbjct: 137 DSYHVMRGIDEIIPVDVYIPGCPPRPEAIIYGMMQLQRKVK 177


>gi|254571403|ref|XP_002492811.1| hypothetical protein [Pichia pastoris GS115]
 gi|238032609|emb|CAY70632.1| Hypothetical protein PAS_chr3_0585 [Pichia pastoris GS115]
 gi|308152254|emb|CBI83546.1| NUKM (PSST) subunit of mitochondrial NADH:ubiquinone oxidoreductase
           (complex I) [Pichia pastoris]
          Length = 204

 Score =  231 bits (590), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 107/176 (60%), Positives = 126/176 (71%)

Query: 2   GLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFG 61
            +   ++++ +  S  S    D              +  T+ D++  WAR  S   MTFG
Sbjct: 16  SVRYASKQVATSHSYSSDLPTDIPVLSKRPHTNLLDYTFTTFDKMKNWARKSSFWPMTFG 75

Query: 62  LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPR 121
           LACCAVEMM  S PRYD +R G   RASPRQSD+MIVAGT+TNKMA ALR+VYDQMP PR
Sbjct: 76  LACCAVEMMHVSAPRYDQDRLGIIFRASPRQSDIMIVAGTVTNKMAPALRQVYDQMPYPR 135

Query: 122 YVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
           +VISMGSCANGGGYYHYSYSVVRG DRIVPVDIYVPGCPPT+EAL+YG+  LQKK+
Sbjct: 136 WVISMGSCANGGGYYHYSYSVVRGVDRIVPVDIYVPGCPPTSEALMYGVFQLQKKM 191


>gi|268566427|ref|XP_002639719.1| Hypothetical protein CBG12445 [Caenorhabditis briggsae]
 gi|300681044|sp|A8XFG2|NDUS7_CAEBR RecName: Full=Probable NADH dehydrogenase [ubiquinone] iron-sulfur
           protein 7, mitochondrial; Flags: Precursor
 gi|187029568|emb|CAP31423.1| CBR-NDUF-7 protein [Caenorhabditis briggsae AF16]
          Length = 199

 Score =  231 bits (590), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 97/151 (64%), Positives = 125/151 (82%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
           +   + +  +D ++  A+ GS+  +TFGLACCAVEMM  + PRYD++R+G   RASPRQ+
Sbjct: 44  SKAEYALARLDDVMNLAQRGSIWPLTFGLACCAVEMMHFAAPRYDMDRYGVVFRASPRQA 103

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD 153
           D++ VAGT+TNKMA ALRR+YDQMPE ++VISMGSCANGGGYYHY+YSV+RGCDR++PVD
Sbjct: 104 DLIFVAGTVTNKMAPALRRIYDQMPEAKWVISMGSCANGGGYYHYAYSVLRGCDRVIPVD 163

Query: 154 IYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           IYVPGCPPTAEAL+YG+L LQKKI+R    +
Sbjct: 164 IYVPGCPPTAEALLYGVLQLQKKIKRKREAQ 194


>gi|17509685|ref|NP_492445.1| NADH Ubiquinone oxidoreductase Fe-S protein family member (nduf-7)
           [Caenorhabditis elegans]
 gi|3024249|sp|Q94360|NDUS7_CAEEL RecName: Full=Probable NADH dehydrogenase [ubiquinone] iron-sulfur
           protein 7, mitochondrial; AltName: Full=Complex I-20kD;
           Short=CI-20kD; AltName: Full=NADH-ubiquinone
           oxidoreductase 20 kDa subunit; Flags: Precursor
 gi|3880584|emb|CAB02132.1| C. elegans protein W10D5.2, confirmed by transcript evidence
           [Caenorhabditis elegans]
          Length = 199

 Score =  231 bits (590), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 97/151 (64%), Positives = 125/151 (82%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
           +   + +  +D ++  A+ GS+  +TFGLACCAVEMM  + PRYD++R+G   RASPRQ+
Sbjct: 44  SKAEYALARLDDVLNLAQRGSIWPLTFGLACCAVEMMHFAAPRYDMDRYGVVFRASPRQA 103

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD 153
           D++ VAGT+TNKMA ALRR+YDQMPE ++VISMGSCANGGGYYHY+YSV+RGCDR++PVD
Sbjct: 104 DLIFVAGTVTNKMAPALRRIYDQMPEAKWVISMGSCANGGGYYHYAYSVLRGCDRVIPVD 163

Query: 154 IYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           IYVPGCPPTAEAL+YG+L LQKKI+R    +
Sbjct: 164 IYVPGCPPTAEALLYGVLQLQKKIKRKREAQ 194


>gi|304407748|ref|ZP_07389399.1| NADH-quinone oxidoreductase, B subunit [Paenibacillus
           curdlanolyticus YK9]
 gi|304343231|gb|EFM09074.1| NADH-quinone oxidoreductase, B subunit [Paenibacillus
           curdlanolyticus YK9]
          Length = 170

 Score =  231 bits (590), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 86/145 (59%), Positives = 110/145 (75%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
             +   + +++Q+  WAR+ SL  +TFGLACCA+EMM      YDL+RFG   R SPRQ+
Sbjct: 16  LERNVFLGTLEQVKAWARSNSLWPLTFGLACCAIEMMGTGASHYDLDRFGVMFRTSPRQA 75

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD 153
           DVMIVAGT+T KM   LRR+YDQMPEP++VI+MGSCA  GG Y  SY+V++G D+IVPVD
Sbjct: 76  DVMIVAGTVTKKMGPLLRRLYDQMPEPKWVIAMGSCATAGGPYVKSYAVIKGVDQIVPVD 135

Query: 154 IYVPGCPPTAEALIYGILLLQKKIR 178
           +Y+PGCPP+  ALIYGI  LQ+KIR
Sbjct: 136 VYIPGCPPSPAALIYGINKLQEKIR 160


>gi|327398400|ref|YP_004339269.1| NAD(P)H-quinone oxidoreductase subunit K [Hippea maritima DSM
           10411]
 gi|327181029|gb|AEA33210.1| NAD(P)H-quinone oxidoreductase subunit K [Hippea maritima DSM
           10411]
          Length = 153

 Score =  231 bits (590), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 94/151 (62%), Positives = 117/151 (77%), Gaps = 1/151 (0%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
               ++ T +D+LV+WAR  SL  MTFGLACCA+EMM     R+DL+RFG   RASPR S
Sbjct: 3   VENPWITTKLDKLVSWARYSSLWPMTFGLACCAIEMMATGASRFDLDRFGVVFRASPRHS 62

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD 153
           D+MI+AGTLT KMA A R+VYDQMP P++VISMGSCAN GG +  +YSVV+G D I+PVD
Sbjct: 63  DIMIIAGTLTKKMAIAARKVYDQMPHPKWVISMGSCANTGGMF-DTYSVVQGVDTIMPVD 121

Query: 154 IYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           +YVPGCPP  E L+YGI+ LQ+KIRR G++K
Sbjct: 122 VYVPGCPPRPEGLLYGIMKLQEKIRREGSMK 152


>gi|295400695|ref|ZP_06810672.1| NADH-quinone oxidoreductase, B subunit [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|312112611|ref|YP_003990927.1| NADH-quinone oxidoreductase subunit beta [Geobacillus sp. Y4.1MC1]
 gi|294977276|gb|EFG52877.1| NADH-quinone oxidoreductase, B subunit [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|311217712|gb|ADP76316.1| NADH-quinone oxidoreductase, B subunit [Geobacillus sp. Y4.1MC1]
          Length = 170

 Score =  231 bits (590), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 93/154 (60%), Positives = 114/154 (74%)

Query: 25  DFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF 84
           D      E   +   +T+++QL  WAR+ SL  +TFGLACCA+EMM      YDL+RFG 
Sbjct: 7   DVPEGEMEEIKRNVFLTTLEQLKAWARSNSLWPLTFGLACCAIEMMGVGGSHYDLDRFGS 66

Query: 85  APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR 144
             RASPRQSDVMIV+GT+T KMA  LRR+YDQMPEP++VI+MGSCA  GG Y  SYSVV+
Sbjct: 67  FFRASPRQSDVMIVSGTVTKKMAPLLRRLYDQMPEPKWVIAMGSCATAGGPYVKSYSVVK 126

Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           G D+IVPVD+Y+PGCPP   ALIYGI  L++KIR
Sbjct: 127 GVDQIVPVDVYIPGCPPNPAALIYGINKLKEKIR 160


>gi|221068611|ref|ZP_03544716.1| NADH-quinone oxidoreductase, B subunit [Comamonas testosteroni
           KF-1]
 gi|264677199|ref|YP_003277105.1| NADH-quinone oxidoreductase, B subunit [Comamonas testosteroni
           CNB-2]
 gi|299530743|ref|ZP_07044158.1| NADH dehydrogenase subunit B [Comamonas testosteroni S44]
 gi|220713634|gb|EED69002.1| NADH-quinone oxidoreductase, B subunit [Comamonas testosteroni
           KF-1]
 gi|262207711|gb|ACY31809.1| NADH-quinone oxidoreductase, B subunit [Comamonas testosteroni
           CNB-2]
 gi|298721259|gb|EFI62201.1| NADH dehydrogenase subunit B [Comamonas testosteroni S44]
          Length = 159

 Score =  231 bits (590), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 112/152 (73%), Positives = 128/152 (84%), Gaps = 1/152 (0%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPR 91
           +  +GF+ TS D +V WA+TGS+  MTFGLACCAVEMM A+  RYD+ RFG    RASPR
Sbjct: 5   VMKEGFVTTSYDTVVNWAKTGSIWPMTFGLACCAVEMMHAAAARYDIGRFGSEVFRASPR 64

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
            SD+MIVAGTL NKMA A+R+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVP
Sbjct: 65  HSDLMIVAGTLCNKMAPAMRKVYDQMSEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVP 124

Query: 152 VDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           VD+YVPGCPPTAEALIYGI+ LQ+KIRR   +
Sbjct: 125 VDVYVPGCPPTAEALIYGIIQLQQKIRRTHTI 156


>gi|291280356|ref|YP_003497191.1| NADH-quinone oxidoreductase subunit B [Deferribacter desulfuricans
           SSM1]
 gi|290755058|dbj|BAI81435.1| NADH-quinone oxidoreductase, B subunit [Deferribacter desulfuricans
           SSM1]
          Length = 158

 Score =  231 bits (589), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 80/150 (53%), Positives = 110/150 (73%), Gaps = 1/150 (0%)

Query: 35  HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSD 94
               +  ++D ++ WAR  S+  +TFGLACCA+EMM A   +YDL+R G   RA+PRQ+D
Sbjct: 9   SDNIITATIDGVINWARKSSIWPVTFGLACCAIEMMAAGASKYDLDRLGVIFRATPRQAD 68

Query: 95  VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154
           +MIVAGT+T KMA  +R+VYDQMPEP++VI+MGSCA  GG ++ +YS V+G D IVPVD 
Sbjct: 69  LMIVAGTVTRKMAPVVRKVYDQMPEPKWVIAMGSCATSGGIFN-TYSTVQGVDEIVPVDF 127

Query: 155 YVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           Y+PGCPP  EAL+  I+ LQ+KI+    ++
Sbjct: 128 YIPGCPPRPEALLDAIVALQEKIKHDKILR 157


>gi|308500063|ref|XP_003112217.1| CRE-NDUF-7 protein [Caenorhabditis remanei]
 gi|308268698|gb|EFP12651.1| CRE-NDUF-7 protein [Caenorhabditis remanei]
          Length = 199

 Score =  231 bits (589), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 97/151 (64%), Positives = 125/151 (82%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
           +   + +  +D ++  A+ GS+  +TFGLACCAVEMM  + PRYD++R+G   RASPRQ+
Sbjct: 44  SKAEYALARLDDVMNLAQRGSIWPLTFGLACCAVEMMHFAAPRYDMDRYGVVFRASPRQA 103

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD 153
           D++ VAGT+TNKMA ALRR+YDQMPE ++VISMGSCANGGGYYHY+YSV+RGCDR++PVD
Sbjct: 104 DLIFVAGTVTNKMAPALRRIYDQMPEAKWVISMGSCANGGGYYHYAYSVLRGCDRVIPVD 163

Query: 154 IYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           IYVPGCPPTAEAL+YG+L LQKKI+R    +
Sbjct: 164 IYVPGCPPTAEALLYGVLQLQKKIKRKREAQ 194


>gi|320580734|gb|EFW94956.1| NADH-ubiquinone oxidoreductase subunit [Pichia angusta DL-1]
          Length = 193

 Score =  231 bits (589), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 107/140 (76%), Positives = 116/140 (82%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           +  TS D+L  WAR  S    TFGLACCAVEMM  S PRYD +R G   RASPRQSDVMI
Sbjct: 41  YAFTSFDKLKNWARKSSFWPATFGLACCAVEMMHVSAPRYDQDRLGIIFRASPRQSDVMI 100

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGT+TNKMA ALR+VYDQMP PR+VISMGSCANGGGYYHYSYSVVRG DRIVPVDIYVP
Sbjct: 101 VAGTVTNKMAPALRQVYDQMPYPRWVISMGSCANGGGYYHYSYSVVRGVDRIVPVDIYVP 160

Query: 158 GCPPTAEALIYGILLLQKKI 177
           GCPP++EAL+YGI  LQKKI
Sbjct: 161 GCPPSSEALMYGIFRLQKKI 180


>gi|29654738|ref|NP_820430.1| NADH dehydrogenase subunit B [Coxiella burnetii RSA 493]
 gi|153207226|ref|ZP_01945990.1| NADH dehydrogenase (ubiquinone), B subunit [Coxiella burnetii 'MSU
           Goat Q177']
 gi|154706106|ref|YP_001423957.1| NADH dehydrogenase subunit B [Coxiella burnetii Dugway 5J108-111]
 gi|161830495|ref|YP_001597292.1| NADH dehydrogenase subunit B [Coxiella burnetii RSA 331]
 gi|165918784|ref|ZP_02218870.1| NADH dehydrogenase (ubiquinone), B subunit [Coxiella burnetii RSA
           334]
 gi|212212183|ref|YP_002303119.1| NADH dehydrogenase subunit B [Coxiella burnetii CbuG_Q212]
 gi|212218213|ref|YP_002305000.1| NADH dehydrogenase subunit B [Coxiella burnetii CbuK_Q154]
 gi|81628735|sp|Q83BQ6|NUOB_COXBU RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|218527985|sp|A9KBK5|NUOB_COXBN RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|218527986|sp|A9N8X2|NUOB_COXBR RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|238055289|sp|B6J695|NUOB_COXB1 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|238055290|sp|B6IZ46|NUOB_COXB2 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|29542006|gb|AAO90944.1| NADH-quinone oxidoreductase chain B [Coxiella burnetii RSA 493]
 gi|120576714|gb|EAX33338.1| NADH dehydrogenase (ubiquinone), B subunit [Coxiella burnetii 'MSU
           Goat Q177']
 gi|154355392|gb|ABS76854.1| NADH-quinone oxidoreductase chain B [Coxiella burnetii Dugway
           5J108-111]
 gi|161762362|gb|ABX78004.1| NADH dehydrogenase (ubiquinone), B subunit [Coxiella burnetii RSA
           331]
 gi|165917508|gb|EDR36112.1| NADH dehydrogenase (ubiquinone), B subunit [Coxiella burnetii RSA
           334]
 gi|212010593|gb|ACJ17974.1| NADH-quinone oxidoreductase chain B [Coxiella burnetii CbuG_Q212]
 gi|212012475|gb|ACJ19855.1| NADH-quinone oxidoreductase chain B [Coxiella burnetii CbuK_Q154]
          Length = 161

 Score =  231 bits (589), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 114/147 (77%), Positives = 128/147 (87%), Gaps = 1/147 (0%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APRASPR 91
           +T +GFL+TS+D L+ WAR+GSL  MTFGLACCAVEMMQ +  RYDL+RFG    R SPR
Sbjct: 5   LTKEGFLLTSLDDLMRWARSGSLWPMTFGLACCAVEMMQCASSRYDLDRFGAGLFRPSPR 64

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
           QSDVMIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHY+YSVVRGCDRIVP
Sbjct: 65  QSDVMIVAGTLCNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYAYSVVRGCDRIVP 124

Query: 152 VDIYVPGCPPTAEALIYGILLLQKKIR 178
           VD+YVPGCPPTAEAL YGI+ L+ KIR
Sbjct: 125 VDVYVPGCPPTAEALFYGIMQLRNKIR 151


>gi|146421276|ref|XP_001486588.1| conserved hypothetical protein [Meyerozyma guilliermondii ATCC
           6260]
 gi|146390003|gb|EDK38161.1| conserved hypothetical protein [Meyerozyma guilliermondii ATCC
           6260]
          Length = 210

 Score =  231 bits (589), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 106/169 (62%), Positives = 128/169 (75%), Gaps = 2/169 (1%)

Query: 18  SLEKVDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMP 75
           + + +  D   IS +       +++TS+D +  WAR  S   +TFGLACCAVEMM  S P
Sbjct: 37  TPKPLPTDMPLISQKTASSPVDYVLTSLDTIANWARKSSFWPVTFGLACCAVEMMHVSAP 96

Query: 76  RYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY 135
           RYD +R G   RASPRQSDVMIVAGT+TNKM  ALR+VYDQM +PR+VISMGSCANGGGY
Sbjct: 97  RYDQDRLGIIFRASPRQSDVMIVAGTVTNKMGPALRQVYDQMADPRWVISMGSCANGGGY 156

Query: 136 YHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           YHYSYSVVRGCDR++PVD+YVPGCPPTAEAL+YG+  LQKK+ R    +
Sbjct: 157 YHYSYSVVRGCDRLIPVDVYVPGCPPTAEALMYGVFRLQKKMMRTRITR 205


>gi|49188135|ref|YP_031388.1| NADH dehydrogenase subunit B [Bacillus anthracis str. Sterne]
 gi|49481270|ref|YP_039290.1| NADH dehydrogenase subunit B [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|52140262|ref|YP_086568.1| NADH dehydrogenase subunit B [Bacillus cereus E33L]
 gi|65317275|ref|ZP_00390234.1| COG0377: NADH:ubiquinone oxidoreductase 20 kD subunit and related
           Fe-S oxidoreductases [Bacillus anthracis str. A2012]
 gi|75762936|ref|ZP_00742740.1| NADH-quinone oxidoreductase chain B [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|118480339|ref|YP_897490.1| NADH dehydrogenase subunit B [Bacillus thuringiensis str. Al Hakam]
 gi|81394192|sp|Q6HAY6|NUOB_BACHK RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|81685364|sp|Q630U9|NUOB_BACCZ RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|238065057|sp|A0RL90|NUOB_BACAH RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|49182062|gb|AAT57438.1| NADH dehydrogenase I, B subunit [Bacillus anthracis str. Sterne]
 gi|49332826|gb|AAT63472.1| NADH dehydrogenase I, subunit B (NADH-quinone oxidoreductase, chain
           B) [Bacillus thuringiensis serovar konkukian str. 97-27]
 gi|51973731|gb|AAU15281.1| NADH dehydrogenase I, subunit B (NADH-quinone oxidoreductase, chain
           B) [Bacillus cereus E33L]
 gi|74489578|gb|EAO52990.1| NADH-quinone oxidoreductase chain B [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|118419564|gb|ABK87983.1| NADH dehydrogenase subunit B [Bacillus thuringiensis str. Al Hakam]
          Length = 179

 Score =  231 bits (589), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 88/154 (57%), Positives = 111/154 (72%)

Query: 25  DFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF 84
           +          +    ++++QL  WAR+ SL  MTFGLACCA+EMM      YDL+RFG 
Sbjct: 14  ELHPNERAELERNIFFSTLEQLKGWARSNSLWPMTFGLACCAIEMMGVGSSHYDLDRFGS 73

Query: 85  APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR 144
             R SPRQSDVMIV+GT+T KMA  +RR+YDQMPEP++VI+MGSCA  GG Y  SY+VV+
Sbjct: 74  FFRTSPRQSDVMIVSGTVTKKMAPIVRRLYDQMPEPKWVIAMGSCATAGGPYVNSYAVVK 133

Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           G D+IVPVD+Y+PGCPP   ALIYGI  L++KIR
Sbjct: 134 GVDQIVPVDVYIPGCPPNPAALIYGINKLKEKIR 167


>gi|304382881|ref|ZP_07365364.1| NADH-quinone oxidoreductase subunit B [Prevotella marshii DSM
           16973]
 gi|304336066|gb|EFM02313.1| NADH-quinone oxidoreductase subunit B [Prevotella marshii DSM
           16973]
          Length = 207

 Score =  231 bits (589), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 81/181 (44%), Positives = 117/181 (64%), Gaps = 7/181 (3%)

Query: 1   MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWM 58
           MG+   N K I  +      K +    +I+ E+   G   ++ ++D L+ W R+ SL  +
Sbjct: 1   MGMKKPNIKSIPYKEF----KDNESLEKIAQELHEGGTNVVLGTLDDLINWGRSNSLWSL 56

Query: 59  TFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQM 117
           TF  +CC +E M     RYD  RFGF   R SPRQ+D+++ AGT+TNKMA   +R+YD+M
Sbjct: 57  TFATSCCGIEFMSVGCARYDFARFGFEVTRNSPRQADLIMCAGTITNKMAPVFKRLYDEM 116

Query: 118 PEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
            EP+YVI++G CA  GG +  SY VVRG + IVPVD+Y+PGCPP  EA++YG++ LQ+KI
Sbjct: 117 AEPKYVIAVGGCAISGGPFKSSYHVVRGINEIVPVDVYIPGCPPRPEAILYGMMQLQRKI 176

Query: 178 R 178
           +
Sbjct: 177 K 177


>gi|313672278|ref|YP_004050389.1| NADH dehydrogenase subunit b [Calditerrivibrio nitroreducens DSM
           19672]
 gi|312939034|gb|ADR18226.1| NADH dehydrogenase subunit B [Calditerrivibrio nitroreducens DSM
           19672]
          Length = 158

 Score =  230 bits (588), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 82/150 (54%), Positives = 110/150 (73%), Gaps = 1/150 (0%)

Query: 35  HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSD 94
               + T+VD ++ WAR  SL  +TFGLACCA+EMM     +YDL+R G   RA+PRQ+D
Sbjct: 9   SDNIITTTVDGVINWARRSSLWPVTFGLACCAIEMMAVGASKYDLDRLGVIFRATPRQAD 68

Query: 95  VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154
           +MIVAGT+T KMA  +R+VYDQMPEP++VI+MGSCA  GG ++ +YS V+G D IVPVD 
Sbjct: 69  LMIVAGTVTRKMAPVVRKVYDQMPEPKWVIAMGSCATSGGIFN-TYSTVQGVDEIVPVDF 127

Query: 155 YVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           Y+PGCPP  EAL+  I+ LQ+KI+    ++
Sbjct: 128 YIPGCPPRPEALLDAIVALQEKIKGEKVLR 157


>gi|78224544|ref|YP_386291.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit [Geobacter
           metallireducens GS-15]
 gi|123570771|sp|Q39QA8|NUOB_GEOMG RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|78195799|gb|ABB33566.1| NADH dehydrogenase subunit B [Geobacter metallireducens GS-15]
          Length = 170

 Score =  230 bits (588), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 79/152 (51%), Positives = 107/152 (70%), Gaps = 1/152 (0%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP 90
            +     F+  S+D LV WAR  S+  MTFGLACCA+EMM       DL+RFG   RASP
Sbjct: 4   DQPLGDSFITASLDGLVNWARKSSIWPMTFGLACCAIEMMATGASHNDLDRFGIIFRASP 63

Query: 91  RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150
           RQ+D +I+AGT+T KM   ++ VY+QMPEP++V++MG+CA  GG +  +YSVV+G D  +
Sbjct: 64  RQADCIIIAGTVTKKMLPVIQTVYEQMPEPKWVVAMGACACSGGVF-DTYSVVQGIDEAL 122

Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
           PVD+Y+PGCPP  EAL+YG++ LQ KI +  N
Sbjct: 123 PVDVYIPGCPPRPEALLYGLIKLQDKIMKDKN 154


>gi|30023332|ref|NP_834963.1| NADH dehydrogenase subunit B [Bacillus cereus ATCC 14579]
 gi|30265322|ref|NP_847699.1| NADH dehydrogenase subunit B [Bacillus anthracis str. Ames]
 gi|42784469|ref|NP_981716.1| NADH dehydrogenase subunit B [Bacillus cereus ATCC 10987]
 gi|47530861|ref|YP_022210.1| NADH dehydrogenase subunit B [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|165869972|ref|ZP_02214629.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus anthracis str.
           A0488]
 gi|167636380|ref|ZP_02394680.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus anthracis str.
           A0442]
 gi|167641714|ref|ZP_02399958.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus anthracis str.
           A0193]
 gi|170689329|ref|ZP_02880523.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus anthracis str.
           A0465]
 gi|170708828|ref|ZP_02899263.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus anthracis str.
           A0389]
 gi|177654059|ref|ZP_02936069.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus anthracis str.
           A0174]
 gi|190567657|ref|ZP_03020569.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus anthracis
           Tsiankovskii-I]
 gi|196036336|ref|ZP_03103734.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus cereus W]
 gi|196039410|ref|ZP_03106715.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus cereus
           NVH0597-99]
 gi|196045583|ref|ZP_03112813.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus cereus
           03BB108]
 gi|206976881|ref|ZP_03237783.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus cereus
           H3081.97]
 gi|217962788|ref|YP_002341364.1| NADH dehydrogenase subunit B [Bacillus cereus AH187]
 gi|218232741|ref|YP_002370074.1| NADH dehydrogenase subunit B [Bacillus cereus B4264]
 gi|218906476|ref|YP_002454310.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus cereus AH820]
 gi|222098770|ref|YP_002532828.1| NADH dehydrogenase subunit b [Bacillus cereus Q1]
 gi|225867276|ref|YP_002752654.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus cereus
           03BB102]
 gi|227818062|ref|YP_002818071.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus anthracis str.
           CDC 684]
 gi|229601924|ref|YP_002869514.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus anthracis str.
           A0248]
 gi|254686278|ref|ZP_05150137.1| NADH dehydrogenase subunit B [Bacillus anthracis str. CNEVA-9066]
 gi|254724274|ref|ZP_05186058.1| NADH dehydrogenase subunit B [Bacillus anthracis str. A1055]
 gi|254735227|ref|ZP_05192936.1| NADH dehydrogenase subunit B [Bacillus anthracis str. Western North
           America USA6153]
 gi|254744431|ref|ZP_05202111.1| NADH dehydrogenase subunit B [Bacillus anthracis str. Kruger B]
 gi|254755735|ref|ZP_05207768.1| NADH dehydrogenase subunit B [Bacillus anthracis str. Vollum]
 gi|254759532|ref|ZP_05211557.1| NADH dehydrogenase subunit B [Bacillus anthracis str. Australia 94]
 gi|296505727|ref|YP_003667427.1| NADH dehydrogenase subunit B [Bacillus thuringiensis BMB171]
 gi|300117809|ref|ZP_07055576.1| NADH dehydrogenase subunit B [Bacillus cereus SJ1]
 gi|301056766|ref|YP_003794977.1| NADH dehydrogenase subunit beta [Bacillus anthracis CI]
 gi|81408415|sp|Q72XF4|NUOB_BACC1 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|81433046|sp|Q814W7|NUOB_BACCR RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|81580962|sp|Q81K01|NUOB_BACAN RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|238065058|sp|B7JGM4|NUOB_BACC0 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|238065060|sp|B7HFJ5|NUOB_BACC4 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|238065061|sp|B7HY57|NUOB_BACC7 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|238065063|sp|B9IRT1|NUOB_BACCQ RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|254767787|sp|C3P1E8|NUOB_BACAA RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|254767788|sp|C3LFH3|NUOB_BACAC RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|254767789|sp|C1F0M2|NUOB_BACC3 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|29898893|gb|AAP12164.1| NADH-quinone oxidoreductase chain B [Bacillus cereus ATCC 14579]
 gi|30260000|gb|AAP29185.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus anthracis str.
           Ames]
 gi|42740401|gb|AAS44324.1| NADH dehydrogenase I, B subunit [Bacillus cereus ATCC 10987]
 gi|47506009|gb|AAT34685.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus anthracis str.
           'Ames Ancestor']
 gi|164714295|gb|EDR19815.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus anthracis str.
           A0488]
 gi|167510339|gb|EDR85741.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus anthracis str.
           A0193]
 gi|167528214|gb|EDR90996.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus anthracis str.
           A0442]
 gi|170126228|gb|EDS95120.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus anthracis str.
           A0389]
 gi|170666697|gb|EDT17466.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus anthracis str.
           A0465]
 gi|172080942|gb|EDT66021.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus anthracis str.
           A0174]
 gi|190561073|gb|EDV15046.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus anthracis
           Tsiankovskii-I]
 gi|195991128|gb|EDX55098.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus cereus W]
 gi|196023414|gb|EDX62091.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus cereus
           03BB108]
 gi|196029570|gb|EDX68172.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus cereus
           NVH0597-99]
 gi|206744847|gb|EDZ56252.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus cereus
           H3081.97]
 gi|217066695|gb|ACJ80945.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus cereus AH187]
 gi|218160698|gb|ACK60690.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus cereus B4264]
 gi|218535886|gb|ACK88284.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus cereus AH820]
 gi|221242829|gb|ACM15539.1| NADH dehydrogenase I, subunit B (NADH-quinone oxidoreductase, chain
           B) [Bacillus cereus Q1]
 gi|225791042|gb|ACO31259.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus cereus
           03BB102]
 gi|227004083|gb|ACP13826.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus anthracis str.
           CDC 684]
 gi|229266332|gb|ACQ47969.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus anthracis str.
           A0248]
 gi|296326779|gb|ADH09707.1| NADH dehydrogenase subunit B [Bacillus thuringiensis BMB171]
 gi|298724673|gb|EFI65348.1| NADH dehydrogenase subunit B [Bacillus cereus SJ1]
 gi|300378935|gb|ADK07839.1| NADH dehydrogenase beta subunit [Bacillus cereus biovar anthracis
           str. CI]
 gi|324329247|gb|ADY24507.1| NADH dehydrogenase subunit B [Bacillus thuringiensis serovar
           finitimus YBT-020]
 gi|326943097|gb|AEA18993.1| NADH dehydrogenase subunit B [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 172

 Score =  230 bits (588), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 88/154 (57%), Positives = 111/154 (72%)

Query: 25  DFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF 84
           +          +    ++++QL  WAR+ SL  MTFGLACCA+EMM      YDL+RFG 
Sbjct: 7   ELHPNERAELERNIFFSTLEQLKGWARSNSLWPMTFGLACCAIEMMGVGSSHYDLDRFGS 66

Query: 85  APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR 144
             R SPRQSDVMIV+GT+T KMA  +RR+YDQMPEP++VI+MGSCA  GG Y  SY+VV+
Sbjct: 67  FFRTSPRQSDVMIVSGTVTKKMAPIVRRLYDQMPEPKWVIAMGSCATAGGPYVNSYAVVK 126

Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           G D+IVPVD+Y+PGCPP   ALIYGI  L++KIR
Sbjct: 127 GVDQIVPVDVYIPGCPPNPAALIYGINKLKEKIR 160


>gi|206970223|ref|ZP_03231176.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus cereus AH1134]
 gi|206734800|gb|EDZ51969.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus cereus AH1134]
          Length = 172

 Score =  230 bits (588), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 87/154 (56%), Positives = 111/154 (72%)

Query: 25  DFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF 84
           +          +    ++++QL  WAR+ SL  MTFGLACCA+EMM      YDL+RFG 
Sbjct: 7   ELHPNERAELERNIFFSTLEQLKGWARSNSLWPMTFGLACCAIEMMGVGSSHYDLDRFGS 66

Query: 85  APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR 144
             R SPRQSDVMIV+GT+T KMA  +RR+YDQMPEP++VI+MGSCA  GG Y  SY+VV+
Sbjct: 67  FFRTSPRQSDVMIVSGTVTKKMAPIVRRLYDQMPEPKWVIAMGSCATAGGPYVNSYAVVK 126

Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           G D+I+PVD+Y+PGCPP   ALIYGI  L++KIR
Sbjct: 127 GVDQILPVDVYIPGCPPNPAALIYGINKLKEKIR 160


>gi|163942987|ref|YP_001647871.1| NADH dehydrogenase subunit B [Bacillus weihenstephanensis KBAB4]
 gi|238055233|sp|A9VS97|NUOB_BACWK RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|163865184|gb|ABY46243.1| NADH-quinone oxidoreductase, B subunit [Bacillus weihenstephanensis
           KBAB4]
          Length = 172

 Score =  230 bits (588), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 88/154 (57%), Positives = 111/154 (72%)

Query: 25  DFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF 84
           +          +    ++++QL  WAR+ SL  MTFGLACCA+EMM      YDL+RFG 
Sbjct: 7   ELHPQERAELERNIFFSTLEQLKGWARSNSLWPMTFGLACCAIEMMGVGSSHYDLDRFGS 66

Query: 85  APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR 144
             R SPRQSDVMIV+GT+T KMA  +RR+YDQMPEP++VI+MGSCA  GG Y  SY+VV+
Sbjct: 67  FFRTSPRQSDVMIVSGTVTKKMAPIVRRLYDQMPEPKWVIAMGSCATAGGPYVNSYAVVK 126

Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           G D+IVPVD+Y+PGCPP   ALIYGI  L++KIR
Sbjct: 127 GVDQIVPVDVYIPGCPPNPAALIYGINKLKEKIR 160


>gi|47569794|ref|ZP_00240465.1| NADH dehydrogenase I, B subunit [Bacillus cereus G9241]
 gi|47553536|gb|EAL11916.1| NADH dehydrogenase I, B subunit [Bacillus cereus G9241]
          Length = 172

 Score =  230 bits (588), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 88/154 (57%), Positives = 111/154 (72%)

Query: 25  DFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF 84
           +          +    ++++QL  WAR+ SL  MTFGLACCA+EMM      YDL+RFG 
Sbjct: 7   ELHPNERAELERNIFFSTLEQLKGWARSNSLWPMTFGLACCAIEMMGVGSSHYDLDRFGS 66

Query: 85  APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR 144
             R SPRQSDVMIV+GT+T KMA  +RR+YDQMPEP++VI+MGSCA  GG Y  SY+VV+
Sbjct: 67  FFRTSPRQSDVMIVSGTVTKKMAPIVRRLYDQMPEPKWVIAMGSCATAGGPYINSYAVVK 126

Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           G D+IVPVD+Y+PGCPP   ALIYGI  L++KIR
Sbjct: 127 GVDQIVPVDVYIPGCPPNPAALIYGINKLKEKIR 160


>gi|34498210|ref|NP_902425.1| NADH dehydrogenase subunit B [Chromobacterium violaceum ATCC 12472]
 gi|81655254|sp|Q7NUE5|NUOB2_CHRVO RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName:
           Full=NADH dehydrogenase I subunit B 2; AltName:
           Full=NDH-1 subunit B 2
 gi|34104063|gb|AAQ60423.1| NADH-ubiquinone oxidoreductase, chain B [Chromobacterium violaceum
           ATCC 12472]
          Length = 171

 Score =  230 bits (588), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 108/153 (70%), Positives = 132/153 (86%)

Query: 30  SSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS 89
           S  +   GFL+T++D L   A++GSL +++FGLACCAVEMM A+  RYD++RFG+ PRA+
Sbjct: 3   SPSLEKDGFLLTTLDGLFGRAQSGSLWYLSFGLACCAVEMMHAAAARYDMDRFGWIPRAT 62

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQ+D+MIVAGTLTNKMA A+R+VYDQM EPRYV+SMGSCANGGGYYHYSY+VVRGCDRI
Sbjct: 63  PRQADLMIVAGTLTNKMAPAMRKVYDQMSEPRYVLSMGSCANGGGYYHYSYAVVRGCDRI 122

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
           VPVD+YVPGCPPTAEAL+YG++ LQ KIRR   
Sbjct: 123 VPVDVYVPGCPPTAEALLYGLMQLQAKIRRDDT 155


>gi|328353181|emb|CCA39579.1| NADH dehydrogenase (ubiquinone) Fe-S protein 7 [Pichia pastoris CBS
           7435]
          Length = 282

 Score =  230 bits (588), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 104/140 (74%), Positives = 117/140 (83%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           +  T+ D++  WAR  S   MTFGLACCAVEMM  S PRYD +R G   RASPRQSD+MI
Sbjct: 130 YTFTTFDKMKNWARKSSFWPMTFGLACCAVEMMHVSAPRYDQDRLGIIFRASPRQSDIMI 189

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGT+TNKMA ALR+VYDQMP PR+VISMGSCANGGGYYHYSYSVVRG DRIVPVDIYVP
Sbjct: 190 VAGTVTNKMAPALRQVYDQMPYPRWVISMGSCANGGGYYHYSYSVVRGVDRIVPVDIYVP 249

Query: 158 GCPPTAEALIYGILLLQKKI 177
           GCPPT+EAL+YG+  LQKK+
Sbjct: 250 GCPPTSEALMYGVFQLQKKM 269


>gi|170592879|ref|XP_001901192.1| Probable NADH-ubiquinone oxidoreductase 20 kDa subunit,
           mitochondrialprecursor  [Brugia malayi]
 gi|158591259|gb|EDP29872.1| Probable NADH-ubiquinone oxidoreductase 20 kDa subunit,
           mitochondrialprecursor , putative [Brugia malayi]
          Length = 216

 Score =  230 bits (587), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 105/153 (68%), Positives = 121/153 (79%)

Query: 30  SSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS 89
              +      VT +D L       SL  MTFGLACCAVEMM  + PRYD++RFG   RAS
Sbjct: 57  QDPLPKGEMAVTRLDDLNNMIHRCSLWPMTFGLACCAVEMMHFAAPRYDMDRFGVVFRAS 116

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQSDVMIVAGT+TNKMA A+RRVYDQMPEP++VISMGSCANGGGYYHYSYSV++G DRI
Sbjct: 117 PRQSDVMIVAGTVTNKMAPAVRRVYDQMPEPKWVISMGSCANGGGYYHYSYSVLKGVDRI 176

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
           +PVDIYVPGCPP+AEAL+YG+L LQKKI+R   
Sbjct: 177 IPVDIYVPGCPPSAEALLYGVLQLQKKIKRKRE 209


>gi|288926087|ref|ZP_06420015.1| proton-translocating NADH-quinone oxidoreductase, B subunit
           [Prevotella buccae D17]
 gi|288337127|gb|EFC75485.1| proton-translocating NADH-quinone oxidoreductase, B subunit
           [Prevotella buccae D17]
          Length = 287

 Score =  230 bits (587), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 76/161 (47%), Positives = 113/161 (70%), Gaps = 3/161 (1%)

Query: 21  KVDADFSRISSEITHKGF--LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78
           K +    +++ E+   G   ++ ++DQL+ W R+ SL  +TF  +CC +E M     RYD
Sbjct: 17  KDNGTLEKMADELNEGGVNLVLGNLDQLINWGRSNSLWSLTFATSCCGIEFMATGCARYD 76

Query: 79  LERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137
             RFGF   R SPRQ+D+++ AGT+TNKMA AL+R+YD+M EP+YV+++G CA  GG + 
Sbjct: 77  FSRFGFEVTRNSPRQADLIMCAGTITNKMAPALKRLYDEMAEPKYVVAVGGCAISGGPFK 136

Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
            SY VVRG D I+PVD+Y+PGCPP  EA++YG++ LQ+K++
Sbjct: 137 SSYHVVRGIDEIIPVDVYIPGCPPRPEAIMYGMMQLQRKVK 177


>gi|218900425|ref|YP_002448836.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus cereus G9842]
 gi|238065059|sp|B7IQV2|NUOB_BACC2 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|218541670|gb|ACK94064.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus cereus G9842]
          Length = 172

 Score =  230 bits (587), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 88/145 (60%), Positives = 110/145 (75%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
             +    ++++QL  WAR+ SL  MTFGLACCA+EMM      YDL+RFG   R SPRQS
Sbjct: 16  LERNIFFSTLEQLKGWARSNSLWPMTFGLACCAIEMMGVGSSHYDLDRFGSFFRTSPRQS 75

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD 153
           DVMIV+GT+T KMA  +RR+YDQMPEP++VI+MGSCA  GG Y  SY+VV+G D+IVPVD
Sbjct: 76  DVMIVSGTVTKKMAPIVRRLYDQMPEPKWVIAMGSCATAGGPYVNSYAVVKGVDQIVPVD 135

Query: 154 IYVPGCPPTAEALIYGILLLQKKIR 178
           +Y+PGCPP   ALIYGI  L++KIR
Sbjct: 136 VYIPGCPPNPAALIYGINKLKEKIR 160


>gi|148266253|ref|YP_001232959.1| NADH-quinone oxidoreductase, B subunit [Geobacter uraniireducens
           Rf4]
 gi|238065155|sp|A5G9B8|NUOB_GEOUR RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|146399753|gb|ABQ28386.1| NADH dehydrogenase subunit B [Geobacter uraniireducens Rf4]
          Length = 170

 Score =  230 bits (587), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 80/152 (52%), Positives = 108/152 (71%), Gaps = 1/152 (0%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP 90
            +      +  S+D LV WAR  S+  MTFGLACCA+EMM     ++DL+RFG   RASP
Sbjct: 4   EQPLGDNIVTASLDGLVNWARKSSIWPMTFGLACCAIEMMATGAAKHDLDRFGIIFRASP 63

Query: 91  RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150
           RQSD +I+AGT+T KM   ++ VY+QMPEP++VI+MG+CA  GG +  +YSVV+G D  +
Sbjct: 64  RQSDCIIIAGTVTKKMLPVIKTVYEQMPEPKWVIAMGACACSGGVF-DTYSVVQGVDEAL 122

Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
           PVD+Y+PGCPP  EAL+YG++ LQ KI +  N
Sbjct: 123 PVDVYIPGCPPRPEALLYGLMKLQDKIGKERN 154


>gi|260940357|ref|XP_002614478.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720]
 gi|238851664|gb|EEQ41128.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720]
          Length = 208

 Score =  230 bits (586), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 108/185 (58%), Positives = 133/185 (71%), Gaps = 2/185 (1%)

Query: 2   GLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMT 59
            L   ++++       +   ++ D   +S +       + +TS+D +  WAR  S   +T
Sbjct: 19  ALRFASKQVGLPAKDLTPRPMETDLPLMSQKTASSPIDYALTSLDAIAMWARKSSFWPVT 78

Query: 60  FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119
           FGLACCAVEMM  S PRYD +R G   RASPRQSD+MIVAGTLTNKMA ALR+VYDQM +
Sbjct: 79  FGLACCAVEMMHVSTPRYDQDRLGIIFRASPRQSDIMIVAGTLTNKMAPALRQVYDQMAD 138

Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           PR+VISMGSCANGGGYYHYSYSVVRGCDR+VPVDIYVPGCPPTAEAL+YG+  LQKK+ +
Sbjct: 139 PRWVISMGSCANGGGYYHYSYSVVRGCDRVVPVDIYVPGCPPTAEALMYGVFQLQKKMMK 198

Query: 180 VGNVK 184
               +
Sbjct: 199 TRVTR 203


>gi|312130053|ref|YP_003997393.1| NADH dehydrogenase subunit b [Leadbetterella byssophila DSM 17132]
 gi|311906599|gb|ADQ17040.1| NADH dehydrogenase subunit B [Leadbetterella byssophila DSM 17132]
          Length = 169

 Score =  230 bits (586), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 90/163 (55%), Positives = 119/163 (73%), Gaps = 4/163 (2%)

Query: 19  LEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78
           LE +++++   S E      ++T++D+L  WAR  SL  M FGLACCA+EMM      YD
Sbjct: 2   LESLESNYWEKSGE---GEVILTNLDELTNWARANSLWPMGFGLACCAIEMMATFASSYD 58

Query: 79  LERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY 138
           LERFG  PR SPRQSD+MI++GT+T KMA  +RR+Y+QM EPRYVISMGSC+N GG Y  
Sbjct: 59  LERFGIFPRNSPRQSDLMIISGTVTFKMADRVRRLYEQMAEPRYVISMGSCSNCGGPYWE 118

Query: 139 -SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
             Y V++G D+++PVD+YVPGCPP  EALI G++ LQ+KI+R 
Sbjct: 119 HGYHVLKGVDKVIPVDVYVPGCPPRPEALIGGLIKLQEKIKRQ 161


>gi|212640517|ref|YP_002317037.1| NADH dehydrogenase subunit B [Anoxybacillus flavithermus WK1]
 gi|238065054|sp|B7GMF0|NUOB_ANOFW RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|212561997|gb|ACJ35052.1| NADH dehydrogenase subunit B [Anoxybacillus flavithermus WK1]
          Length = 177

 Score =  230 bits (586), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 89/147 (60%), Positives = 111/147 (75%)

Query: 32  EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPR 91
           E   +   +T+++QL  WAR+ SL  +TFGLACCA+EMM      YDL+RFG   R SPR
Sbjct: 21  EEMRRNVFLTTLEQLKAWARSNSLWPLTFGLACCAIEMMGVGSSHYDLDRFGSFFRTSPR 80

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
           QSDVMIV+GT+T KMA  +RR+YDQMPEP++VI+MGSCA  GG Y  SY VV+G D+IVP
Sbjct: 81  QSDVMIVSGTVTKKMAPIVRRLYDQMPEPKWVIAMGSCATAGGPYVKSYCVVKGVDQIVP 140

Query: 152 VDIYVPGCPPTAEALIYGILLLQKKIR 178
           VD+Y+PGCPP   ALIYGI  L++KIR
Sbjct: 141 VDVYIPGCPPNPAALIYGINKLKEKIR 167


>gi|315608360|ref|ZP_07883349.1| NADH-quinone oxidoreductase subunit B [Prevotella buccae ATCC
           33574]
 gi|315249990|gb|EFU29990.1| NADH-quinone oxidoreductase subunit B [Prevotella buccae ATCC
           33574]
          Length = 287

 Score =  230 bits (586), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 76/161 (47%), Positives = 113/161 (70%), Gaps = 3/161 (1%)

Query: 21  KVDADFSRISSEITHKGF--LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78
           K +    +++ E+   G   ++ ++DQL+ W R+ SL  +TF  +CC +E M     RYD
Sbjct: 17  KDNGTLEKMADELNEGGVNLVLGNLDQLINWGRSNSLWSLTFATSCCGIEFMATGCARYD 76

Query: 79  LERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137
             RFGF   R SPRQ+D+++ AGT+TNKMA AL+R+YD+M EP+YV+++G CA  GG + 
Sbjct: 77  FSRFGFEVTRNSPRQADLIMCAGTITNKMAPALKRLYDEMAEPKYVVAVGGCAVSGGPFK 136

Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
            SY VVRG D I+PVD+Y+PGCPP  EA++YG++ LQ+K++
Sbjct: 137 SSYHVVRGIDEIIPVDVYIPGCPPRPEAIMYGMMQLQRKVK 177


>gi|300727166|ref|ZP_07060584.1| NADH dehydrogenase I, b subunit [Prevotella bryantii B14]
 gi|299775552|gb|EFI72144.1| NADH dehydrogenase I, b subunit [Prevotella bryantii B14]
          Length = 254

 Score =  229 bits (585), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 73/161 (45%), Positives = 111/161 (68%), Gaps = 3/161 (1%)

Query: 21  KVDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78
           K +    +I++E+   G   ++ S+D  + W R+ S   +TFG +CC +E M     RYD
Sbjct: 18  KDNDSLEKIAAELNEGGANVVLGSLDAAINWGRSNSPWSLTFGTSCCGIEFMAIGCARYD 77

Query: 79  LERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137
           + RFG+   R SPRQ+D+++ AGT+TNKMA   +R+YD+M EP+YV+++G C   GG + 
Sbjct: 78  MSRFGWEVTRNSPRQADLIMCAGTITNKMAPVFKRLYDEMAEPKYVVAVGGCTISGGPFK 137

Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
            SY+VVRG + +VPVD+Y+PGCPP  EA+IYG++ LQ+KI+
Sbjct: 138 KSYNVVRGINELVPVDVYIPGCPPRPEAIIYGMMQLQRKIK 178


>gi|332971775|gb|EGK10723.1| NADH-quinone oxidoreductase subunit B [Desmospora sp. 8437]
          Length = 175

 Score =  229 bits (585), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 92/144 (63%), Positives = 110/144 (76%)

Query: 35  HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSD 94
            +    T+++ +  WAR+ SL  MTFGLACCA+EMM    P YDL+RFG   RASPRQSD
Sbjct: 17  QRNVFTTTLENVKAWARSNSLWPMTFGLACCAIEMMGTGAPHYDLDRFGSFFRASPRQSD 76

Query: 95  VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154
           VMIVAGT+T KM   LRR+YDQMPEP++VI+MGSCA  GG Y  SYSVV+G D+IVPVD+
Sbjct: 77  VMIVAGTVTKKMGPLLRRLYDQMPEPKWVIAMGSCATAGGPYVKSYSVVKGVDQIVPVDV 136

Query: 155 YVPGCPPTAEALIYGILLLQKKIR 178
           Y+PGCPP   ALIYGI  LQ+KIR
Sbjct: 137 YIPGCPPNPAALIYGIHKLQEKIR 160


>gi|189426186|ref|YP_001953363.1| NADH-quinone oxidoreductase, B subunit [Geobacter lovleyi SZ]
 gi|238065152|sp|B3E9W8|NUOB_GEOLS RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|189422445|gb|ACD96843.1| NADH-quinone oxidoreductase, B subunit [Geobacter lovleyi SZ]
          Length = 169

 Score =  229 bits (585), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 80/152 (52%), Positives = 108/152 (71%), Gaps = 1/152 (0%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP 90
           ++       VTS+D+LV W R  S+  MTFGLACCA+EMM       DL+RFG   RASP
Sbjct: 4   NQPLGGNVTVTSLDKLVNWVRKSSIWPMTFGLACCAIEMMATGASHNDLDRFGIIFRASP 63

Query: 91  RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150
           RQ+D +I+AGT+T KM   ++ VY+QMPEP++VI+MG+CA  GG +  +YSVV+G D  +
Sbjct: 64  RQADCIIIAGTVTKKMLPVIQTVYEQMPEPKWVIAMGACACSGGIF-DTYSVVQGIDEAL 122

Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
           PVD+Y+PGCPP  EAL+YG++ LQ KI +  N
Sbjct: 123 PVDVYIPGCPPRPEALLYGLMKLQDKIMQESN 154


>gi|296232412|ref|XP_002761582.1| PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 7,
           mitochondrial-like [Callithrix jacchus]
          Length = 305

 Score =  229 bits (585), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 107/181 (59%), Positives = 127/181 (70%), Gaps = 2/181 (1%)

Query: 6   VNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACC 65
           V+Q + +   S +   +    + +    +   ++V  +D L+ WAR  SL  MTFGLACC
Sbjct: 120 VHQTVATNGPSSTQPALPKARAVVPKPSSRGEYVVAKLDDLINWARRSSLWPMTFGLACC 179

Query: 66  AVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVIS 125
           AVEMM  + PRYD++RFG   RASPRQSDVMIVAGTLTNKMA ALRRV    P P     
Sbjct: 180 AVEMMHMAAPRYDMDRFGVVFRASPRQSDVMIVAGTLTNKMAPALRRVGRVGPWPPLPSR 239

Query: 126 M--GSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
               SCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQ+KI+R   +
Sbjct: 240 RLPHSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQRKIKRERRL 299

Query: 184 K 184
           +
Sbjct: 300 Q 300


>gi|145612789|ref|XP_360493.2| hypothetical protein MGG_10805 [Magnaporthe oryzae 70-15]
 gi|145019908|gb|EDK04136.1| hypothetical protein MGG_10805 [Magnaporthe oryzae 70-15]
          Length = 147

 Score =  229 bits (585), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 100/142 (70%), Positives = 121/142 (85%)

Query: 43  VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL 102
           +D+L+ WAR GS+  +TF LACC +EMM  SMPRYD +R G   RASPRQ+DVMIVAGT+
Sbjct: 1   MDRLLAWARNGSMWPLTFALACCGIEMMHLSMPRYDQDRLGIIFRASPRQADVMIVAGTV 60

Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162
           TNKMA A+R+ YDQMP+P++VISMG+CANGGGYYHYSYSVVRG DRI+PVDIYVPGCPPT
Sbjct: 61  TNKMAPAVRQCYDQMPDPKWVISMGTCANGGGYYHYSYSVVRGVDRILPVDIYVPGCPPT 120

Query: 163 AEALIYGILLLQKKIRRVGNVK 184
           AEAL+YG+L LQKKI++    +
Sbjct: 121 AEALMYGLLQLQKKIQKTKVTR 142


>gi|167588033|ref|ZP_02380421.1| NADH dehydrogenase subunit B [Burkholderia ubonensis Bu]
          Length = 167

 Score =  229 bits (585), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 109/151 (72%), Positives = 128/151 (84%)

Query: 32  EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPR 91
            +   GF+VTS++ ++  ART SL +MTFGLACCAVEMM A+  RYD++RFG  PRASPR
Sbjct: 7   TLEKDGFVVTSLEAVMAAARTNSLWYMTFGLACCAVEMMHAAGARYDMDRFGMIPRASPR 66

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
           Q D+MIV+GTLTNKMA A+R+VYDQM EPRYV+SMGSCANGGGYYHYSYSVVRGCDRIVP
Sbjct: 67  QCDLMIVSGTLTNKMAPAMRKVYDQMAEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVP 126

Query: 152 VDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
           VD+YVPGCPPTAEALIYG++ LQ+KI     
Sbjct: 127 VDVYVPGCPPTAEALIYGLMQLQRKIMEQST 157


>gi|222053571|ref|YP_002535933.1| NADH-quinone oxidoreductase, B subunit [Geobacter sp. FRC-32]
 gi|238065153|sp|B9LZL8|NUOB_GEOSF RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|221562860|gb|ACM18832.1| NADH-quinone oxidoreductase, B subunit [Geobacter sp. FRC-32]
          Length = 170

 Score =  229 bits (584), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 81/152 (53%), Positives = 108/152 (71%), Gaps = 1/152 (0%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP 90
            +      +  S+D LV WAR  S+  MTFGLACCA+EMM     ++DL+RFG   RASP
Sbjct: 4   EQPLGDNIVTASLDGLVNWARKTSIWPMTFGLACCAIEMMATGAAKHDLDRFGIIFRASP 63

Query: 91  RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150
           RQ+D +I+AGT+T KM   ++ VY+QMPEP++VI+MG+CA  GG +  +YSVV+G D  +
Sbjct: 64  RQADCIIIAGTVTKKMLPVIKTVYEQMPEPKWVIAMGACACSGGVF-DTYSVVQGIDEAL 122

Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
           PVD+YVPGCPP  EAL+YGI+ LQ KI +  N
Sbjct: 123 PVDVYVPGCPPRPEALLYGIMKLQDKIGKERN 154


>gi|212693812|ref|ZP_03301940.1| hypothetical protein BACDOR_03333 [Bacteroides dorei DSM 17855]
 gi|237709340|ref|ZP_04539821.1| trifunctional NADH dehydrogenase I subunit B/C/D [Bacteroides sp.
           9_1_42FAA]
 gi|237724574|ref|ZP_04555055.1| trifunctional NADH dehydrogenase I subunit B/C/D [Bacteroides sp.
           D4]
 gi|265755015|ref|ZP_06089929.1| NADH-quinone oxidoreductase [Bacteroides sp. 3_1_33FAA]
 gi|212663701|gb|EEB24275.1| hypothetical protein BACDOR_03333 [Bacteroides dorei DSM 17855]
 gi|229437133|gb|EEO47210.1| trifunctional NADH dehydrogenase I subunit B/C/D [Bacteroides dorei
           5_1_36/D4]
 gi|229456725|gb|EEO62446.1| trifunctional NADH dehydrogenase I subunit B/C/D [Bacteroides sp.
           9_1_42FAA]
 gi|263234626|gb|EEZ20205.1| NADH-quinone oxidoreductase [Bacteroides sp. 3_1_33FAA]
          Length = 198

 Score =  229 bits (584), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 76/161 (47%), Positives = 110/161 (68%), Gaps = 3/161 (1%)

Query: 21  KVDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78
           K +     +  ++   G   LV  +D L+ W R+ SL  +TF  +CC +E M     RYD
Sbjct: 17  KNNEYLENMVKQLNESGTKVLVGCLDDLINWGRSNSLWPLTFATSCCGIEFMAVGAARYD 76

Query: 79  LERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137
             RFGF   RASPRQ+D+++VAGT+T+KMA  L+R+YDQM +P+YVI++G CA  GG + 
Sbjct: 77  FARFGFEVARASPRQADMIMVAGTITHKMAPVLKRLYDQMADPKYVIAVGGCAISGGPFK 136

Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
            SY V+ G D+I+PVD+Y+PGCPP  EAL+YG++ LQ+K++
Sbjct: 137 KSYHVLNGVDKILPVDVYIPGCPPRPEALLYGMIQLQRKVK 177


>gi|325269277|ref|ZP_08135895.1| NADH dehydrogenase I subunit B [Prevotella multiformis DSM 16608]
 gi|324988404|gb|EGC20369.1| NADH dehydrogenase I subunit B [Prevotella multiformis DSM 16608]
          Length = 297

 Score =  229 bits (584), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 78/161 (48%), Positives = 115/161 (71%), Gaps = 3/161 (1%)

Query: 21  KVDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78
           K +   S+++SE+   G   ++ ++DQL+ W R+ SL  +TF  +CC +E M     RYD
Sbjct: 17  KDNDTLSKMASELNDGGTNLVLGNLDQLINWGRSNSLWSLTFATSCCGIEFMAVGCARYD 76

Query: 79  LERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137
             RFGF   R SPRQ+D+++ AGT+TNKMA AL+R+YD+M EP+YVI++G CA  GG + 
Sbjct: 77  FSRFGFEVTRNSPRQADLIMCAGTITNKMAPALKRLYDEMAEPKYVIAVGGCAISGGPFK 136

Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
            SY V+RG D I+PVD+Y+PGCPP  EA++YG++ LQ+K++
Sbjct: 137 DSYHVMRGIDEIIPVDVYIPGCPPRPEAIVYGMMQLQRKVK 177


>gi|312077007|ref|XP_003141114.1| NADH-ubiquinone oxidoreductase Fe-S protein 7 [Loa loa]
 gi|307763722|gb|EFO22956.1| NADH-ubiquinone oxidoreductase Fe-S protein 7 [Loa loa]
          Length = 204

 Score =  229 bits (584), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 105/154 (68%), Positives = 121/154 (78%)

Query: 30  SSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS 89
              +      VT +D L       SL  MTFGLACCAVEMM  + PRYD++RFG   RAS
Sbjct: 51  QDPLPKGEMAVTRLDDLNNMIHRSSLWPMTFGLACCAVEMMHFAAPRYDMDRFGVVFRAS 110

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQSDVMIVAGT+TNKMA A+RRVYDQMPEP++VISMGSCANGGGYYHYSYSV++G DRI
Sbjct: 111 PRQSDVMIVAGTVTNKMAPAVRRVYDQMPEPKWVISMGSCANGGGYYHYSYSVLKGVDRI 170

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           +PVDIYVPGCPP+AEAL+YG+L LQKK+   G V
Sbjct: 171 IPVDIYVPGCPPSAEALLYGVLQLQKKLSGNGRV 204


>gi|319650861|ref|ZP_08004998.1| NADH dehydrogenase subunit B [Bacillus sp. 2_A_57_CT2]
 gi|317397459|gb|EFV78160.1| NADH dehydrogenase subunit B [Bacillus sp. 2_A_57_CT2]
          Length = 177

 Score =  229 bits (584), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 90/155 (58%), Positives = 113/155 (72%)

Query: 24  ADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFG 83
            + S    E   +   + +++Q+  WAR+ SL  MTFGLACCA+EMM      YDL+RFG
Sbjct: 13  DNISPEEMEELQRNVFMATLEQIKAWARSNSLWPMTFGLACCAIEMMGVGSSHYDLDRFG 72

Query: 84  FAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVV 143
              R SPRQSDVMIV+GT+T KMA  +RR+YDQMPEP++VI+MGSCA  GG Y  SYSVV
Sbjct: 73  SFFRTSPRQSDVMIVSGTVTKKMAPIVRRLYDQMPEPKWVIAMGSCATAGGPYVKSYSVV 132

Query: 144 RGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           +G D+IVPVD+Y+PGCPP   ALIYGI  L++KIR
Sbjct: 133 KGVDQIVPVDVYIPGCPPNPAALIYGINKLKEKIR 167


>gi|89900287|ref|YP_522758.1| NADH dehydrogenase subunit B [Rhodoferax ferrireducens T118]
 gi|122479525|sp|Q21YC6|NUOB_RHOFD RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|89345024|gb|ABD69227.1| NADH-quinone oxidoreductase, B subunit [Rhodoferax ferrireducens
           T118]
          Length = 159

 Score =  229 bits (584), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 111/152 (73%), Positives = 126/152 (82%), Gaps = 1/152 (0%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPR 91
           I  +GF+ TS D ++ WA+TGSL  M+FGLACCAVEMM A+  RYD+ RFG    RASPR
Sbjct: 5   ILKEGFITTSYDSVMNWAKTGSLWPMSFGLACCAVEMMHAANARYDISRFGAEVFRASPR 64

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
           QSD++IVAGTL NKMA A R+VYDQM EPR VISMGSCANGGGYYHYSYSVVRGCDRIVP
Sbjct: 65  QSDLIIVAGTLCNKMAPAFRKVYDQMSEPRRVISMGSCANGGGYYHYSYSVVRGCDRIVP 124

Query: 152 VDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           VD+YVPGCPPTAEAL+YGI+ LQ KIRR   +
Sbjct: 125 VDVYVPGCPPTAEALLYGIIQLQHKIRRTQTI 156


>gi|238493105|ref|XP_002377789.1| formate hydrogenlyase, putative [Aspergillus flavus NRRL3357]
 gi|220696283|gb|EED52625.1| formate hydrogenlyase, putative [Aspergillus flavus NRRL3357]
          Length = 228

 Score =  229 bits (583), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 107/182 (58%), Positives = 133/182 (73%), Gaps = 4/182 (2%)

Query: 7   NQKIISGQSSCSLEKVDADFSRISSEITHKG----FLVTSVDQLVTWARTGSLMWMTFGL 62
             +  S  +  ++ K+ +    I++          + +T+ DQL+ WAR GSL  +TF L
Sbjct: 42  QTRQSSTWNPHTVPKLPSQEQGITTNKKEDNGKLEYFLTTTDQLINWARQGSLWPLTFAL 101

Query: 63  ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122
           ACC +EMM  SMPRYD +R G   RASPRQ+DVMIVAGT+TNKMA ALR++YDQMP+P++
Sbjct: 102 ACCGIEMMHVSMPRYDQDRLGIIFRASPRQADVMIVAGTVTNKMAPALRQLYDQMPDPKW 161

Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
           VISMGSCANGGGYY+YSYSVVRG DR+VPVDIYVPGCPPT EAL+Y I  LQKKIRR   
Sbjct: 162 VISMGSCANGGGYYYYSYSVVRGVDRVVPVDIYVPGCPPTPEALMYAIFQLQKKIRRTKV 221

Query: 183 VK 184
            +
Sbjct: 222 TR 223


>gi|193212957|ref|YP_001998910.1| NADH dehydrogenase subunit B [Chlorobaculum parvum NCIB 8327]
 gi|238055284|sp|B3QP57|NUOB_CHLP8 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|193086434|gb|ACF11710.1| NADH-quinone oxidoreductase, B subunit [Chlorobaculum parvum NCIB
           8327]
          Length = 189

 Score =  229 bits (583), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 89/154 (57%), Positives = 117/154 (75%), Gaps = 1/154 (0%)

Query: 29  ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88
           + ++++++  LVTSVD ++ WAR  SL  M FGLACCA+EMM  +   YDLERFG  PR+
Sbjct: 4   LDAKVSNRNVLVTSVDNVMNWARLSSLWPMGFGLACCAIEMMATNASNYDLERFGIFPRS 63

Query: 89  SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCD 147
           SPRQSD+MIVAGT+T KMA  +  +Y+QMPEPRYV+SMGSC+N GG Y    Y V++G D
Sbjct: 64  SPRQSDLMIVAGTVTMKMAERVVTLYEQMPEPRYVLSMGSCSNCGGPYWDHGYHVLKGVD 123

Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
           R++PVD+YVPGCPP  EALI G++ +Q+ IR  G
Sbjct: 124 RVIPVDVYVPGCPPRPEALIGGLMKIQELIRMEG 157


>gi|291515382|emb|CBK64592.1| NADH dehydrogenase subunit B [Alistipes shahii WAL 8301]
          Length = 218

 Score =  229 bits (583), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 75/160 (46%), Positives = 109/160 (68%), Gaps = 3/160 (1%)

Query: 22  VDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDL 79
            +    ++  E+   G   +   +D+++ W R+ SL  +TF  +CC +E M     RYD 
Sbjct: 18  DNEYLEQMVRELRENGTHVVAGCLDEVINWGRSNSLWPLTFATSCCGIEFMAVGAARYDF 77

Query: 80  ERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY 138
            RFGF   RASPRQ+D ++VAGT+T+KMA  LRR+YDQM +P+YVI++G CA  GG +  
Sbjct: 78  ARFGFEVARASPRQADFIMVAGTITHKMAPVLRRLYDQMADPKYVIAVGGCAISGGPFKK 137

Query: 139 SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           SY VV G DRI+PVD+Y+PGCPP  EA++YG++ LQ+K++
Sbjct: 138 SYHVVNGVDRILPVDVYIPGCPPRPEAMLYGLMQLQRKVK 177


>gi|302345400|ref|YP_003813753.1| NADH-quinone oxidoreductase, B subunit [Prevotella melaninogenica
           ATCC 25845]
 gi|302149419|gb|ADK95681.1| NADH-quinone oxidoreductase, B subunit [Prevotella melaninogenica
           ATCC 25845]
          Length = 305

 Score =  229 bits (583), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 80/161 (49%), Positives = 115/161 (71%), Gaps = 3/161 (1%)

Query: 21  KVDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78
           K +   S+++SE+   G   ++ ++DQL+ W R+ SL  +TF  +CC +E M     RYD
Sbjct: 17  KDNDTLSKMASELNDGGTNLVLGNLDQLINWGRSNSLWSLTFATSCCGIEFMSVGCARYD 76

Query: 79  LERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137
             RFGF   R SPRQ+D+++ AGT+TNKMA AL+R+YDQM EP+YVI++G CA  GG + 
Sbjct: 77  FSRFGFEVTRNSPRQADLIMCAGTITNKMAPALKRLYDQMAEPKYVIAVGGCAISGGPFK 136

Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
            SY V+RG D I+PVD+Y+PGCPP  EA+IYG++ LQ+K++
Sbjct: 137 DSYHVMRGIDEIIPVDVYIPGCPPRPEAIIYGMMQLQRKVK 177


>gi|288803376|ref|ZP_06408809.1| NADH dehydrogenase I, B/C/D subunit protein [Prevotella
           melaninogenica D18]
 gi|288334196|gb|EFC72638.1| NADH dehydrogenase I, B/C/D subunit protein [Prevotella
           melaninogenica D18]
          Length = 308

 Score =  228 bits (582), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 80/161 (49%), Positives = 115/161 (71%), Gaps = 3/161 (1%)

Query: 21  KVDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78
           K +   S+++SE+   G   ++ ++DQL+ W R+ SL  +TF  +CC +E M     RYD
Sbjct: 17  KDNDTLSKMASELNDGGTNLVLGNLDQLINWGRSNSLWSLTFATSCCGIEFMSVGCARYD 76

Query: 79  LERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137
             RFGF   R SPRQ+D+++ AGT+TNKMA AL+R+YDQM EP+YVI++G CA  GG + 
Sbjct: 77  FSRFGFEVTRNSPRQADLIMCAGTITNKMAPALKRLYDQMAEPKYVIAVGGCAISGGPFK 136

Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
            SY V+RG D I+PVD+Y+PGCPP  EA+IYG++ LQ+K++
Sbjct: 137 DSYHVMRGIDEIIPVDVYIPGCPPRPEAIIYGMMQLQRKVK 177


>gi|225874130|ref|YP_002755589.1| NADH dehydrogenase I, B subunit [Acidobacterium capsulatum ATCC
           51196]
 gi|225792992|gb|ACO33082.1| NADH dehydrogenase I, B subunit [Acidobacterium capsulatum ATCC
           51196]
          Length = 216

 Score =  228 bits (582), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 77/157 (49%), Positives = 110/157 (70%), Gaps = 1/157 (0%)

Query: 22  VDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLER 81
                  +  E++  G   T++++L  W R  S+  +TFGLACCA+EM+  +M RYDL R
Sbjct: 7   APQQLKDLKVELSKNGVFTTTLEELYNWGRRSSVWPLTFGLACCAIEMIATTMARYDLAR 66

Query: 82  FGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSY 140
           FG    R SPRQ+D++IV+GT+T KMA  + R+Y+QMPEP+YVI+MG+CA  GG +   Y
Sbjct: 67  FGAEVFRPSPRQADLIIVSGTVTKKMAPQVVRLYNQMPEPKYVIAMGACAISGGPFRDGY 126

Query: 141 SVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
           +V++G DR +PVD+++PGCPP  EALI+  + LQKKI
Sbjct: 127 NVLKGIDRYIPVDVHIPGCPPRPEALIHAFMTLQKKI 163


>gi|325857136|ref|ZP_08172426.1| NADH-quinone oxidoreductase, B subunit [Prevotella denticola CRIS
           18C-A]
 gi|327313379|ref|YP_004328816.1| NADH-quinone oxidoreductase subunit B [Prevotella denticola F0289]
 gi|325483199|gb|EGC86177.1| NADH-quinone oxidoreductase, B subunit [Prevotella denticola CRIS
           18C-A]
 gi|326945576|gb|AEA21461.1| NADH-quinone oxidoreductase, B subunit [Prevotella denticola F0289]
          Length = 297

 Score =  228 bits (582), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 77/161 (47%), Positives = 114/161 (70%), Gaps = 3/161 (1%)

Query: 21  KVDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78
           K +    +++SE+   G   ++ ++DQL+ W R+ SL  +TF  +CC +E M     RYD
Sbjct: 17  KDNDTLGKMASELNDGGTNLVLGNLDQLINWGRSNSLWSLTFATSCCGIEFMAVGCARYD 76

Query: 79  LERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137
             RFGF   R SPRQ+D+++ AGT+TNKMA AL+R+YD+M EP+YV+++G CA  GG + 
Sbjct: 77  FSRFGFEVTRNSPRQADLIMCAGTITNKMAPALKRLYDEMAEPKYVVAVGGCAISGGPFK 136

Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
            SY V+RG D I+PVD+Y+PGCPP  EA+IYG++ LQ+K++
Sbjct: 137 DSYHVMRGIDEIIPVDVYIPGCPPRPEAIIYGMMQLQRKVK 177


>gi|167630265|ref|YP_001680764.1| proton-translocating NADH-ubiquinone oxidoreductase, chain b
           [Heliobacterium modesticaldum Ice1]
 gi|238065157|sp|B0TH78|NUOB_HELMI RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|167593005|gb|ABZ84753.1| proton-translocating NADH-ubiquinone oxidoreductase, chain b
           [Heliobacterium modesticaldum Ice1]
          Length = 175

 Score =  228 bits (582), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 82/165 (49%), Positives = 115/165 (69%), Gaps = 1/165 (0%)

Query: 20  EKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDL 79
           + VD        E+  K  ++TS++ +  WAR  SL  ++ GLACCA+EMM     R+D+
Sbjct: 5   KNVDTLSEGQVDELIKKNIIMTSLEAVFNWARGNSLWPLSSGLACCAIEMMATGASRFDM 64

Query: 80  ERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY 138
            RFG+   R SPRQ+D++I+AGTLT KMA A++RVY+QMPEP+++I+MGSCA  GG +  
Sbjct: 65  ARFGYEVFRPSPRQADLIIIAGTLTWKMAPAIQRVYEQMPEPKWIIAMGSCACTGGPFAD 124

Query: 139 SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           SY+VV G D+++PVD+YVPGCPP  EAL+ G L L+ KI+    V
Sbjct: 125 SYAVVPGVDKVIPVDVYVPGCPPRPEALLDGFLKLKAKIQNPAKV 169


>gi|108804469|ref|YP_644406.1| NADH-quinone oxidoreductase subunit B [Rubrobacter xylanophilus DSM
           9941]
 gi|123069071|sp|Q1AVI4|NUOB_RUBXD RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|108765712|gb|ABG04594.1| NADH-quinone oxidoreductase, B subunit [Rubrobacter xylanophilus
           DSM 9941]
          Length = 251

 Score =  228 bits (582), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 84/156 (53%), Positives = 108/156 (69%), Gaps = 1/156 (0%)

Query: 29  ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR- 87
           +  +      + TS D+L  WAR  SL  + FGLACCA+EMM   M   DLERFG     
Sbjct: 3   LMQKFDEPNIITTSTDKLFNWARKNSLWPLQFGLACCAIEMMSTGMAHNDLERFGAGFFA 62

Query: 88  ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCD 147
            SPRQ+DVMIV+GT++ KMA  + R+Y+QMPEP++VI+MG+CA  GG +   YSV+ G D
Sbjct: 63  GSPRQADVMIVSGTVSTKMAERMTRLYEQMPEPKWVIAMGACAISGGPFLDGYSVLMGAD 122

Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           R++PVD+YVPGCPP  EALI+GI+ LQKKI R   V
Sbjct: 123 RVIPVDVYVPGCPPRPEALIFGIMTLQKKIEREQQV 158


>gi|258568476|ref|XP_002584982.1| NADH-ubiquinone oxidoreductase 19.3 kDa subunit [Uncinocarpus
           reesii 1704]
 gi|237906428|gb|EEP80829.1| NADH-ubiquinone oxidoreductase 19.3 kDa subunit [Uncinocarpus
           reesii 1704]
          Length = 176

 Score =  228 bits (581), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 110/168 (65%), Positives = 124/168 (73%), Gaps = 3/168 (1%)

Query: 20  EKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDL 79
            + +              F +T++DQ+  WAR  SL  MTFGLACCAVEMM  S PRYD 
Sbjct: 4   PRREVPLPSQEKREGAMQFALTTLDQVANWARQSSLWPMTFGLACCAVEMMHLSTPRYDQ 63

Query: 80  ERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS 139
           +R G   RASPRQSDVMIVAGTLTNKMA ALR+VYDQMP+PR+VISMGSCANGGGYYHYS
Sbjct: 64  DRLGIIFRASPRQSDVMIVAGTLTNKMAPALRQVYDQMPDPRWVISMGSCANGGGYYHYS 123

Query: 140 YSVVRGCDRIVPVDIYVPGC---PPTAEALIYGILLLQKKIRRVGNVK 184
           YSV RGCDRIVPVDIYVPG    PPT+EAL+YGI  LQKK+R     +
Sbjct: 124 YSVTRGCDRIVPVDIYVPGSLKGPPTSEALMYGIFQLQKKMRHTQITR 171


>gi|251799771|ref|YP_003014502.1| NADH dehydrogenase subunit B [Paenibacillus sp. JDR-2]
 gi|247547397|gb|ACT04416.1| NADH-quinone oxidoreductase, B subunit [Paenibacillus sp. JDR-2]
          Length = 172

 Score =  228 bits (581), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 88/149 (59%), Positives = 110/149 (73%)

Query: 30  SSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS 89
             +   +   + +++QL  WAR+ SL  +TFGLACCA+EMM      YDL+RFG   R S
Sbjct: 12  ERKELERNVFMGTLEQLKAWARSNSLWPLTFGLACCAIEMMGTGASHYDLDRFGVMFRTS 71

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQSDVMIVAGT+T KM   LRR+YDQMPEP++VI+MGSCA  GG Y  SY+V++G D+I
Sbjct: 72  PRQSDVMIVAGTVTKKMGPLLRRLYDQMPEPKWVIAMGSCATAGGPYIKSYAVMKGVDQI 131

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           VPVD+Y+PGCPP   ALIYGI  LQ+KIR
Sbjct: 132 VPVDVYIPGCPPNPAALIYGINKLQEKIR 160


>gi|254883413|ref|ZP_05256123.1| NADH-quinone oxidoreductase [Bacteroides sp. 4_3_47FAA]
 gi|254836206|gb|EET16515.1| NADH-quinone oxidoreductase [Bacteroides sp. 4_3_47FAA]
          Length = 205

 Score =  228 bits (581), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 76/161 (47%), Positives = 110/161 (68%), Gaps = 3/161 (1%)

Query: 21  KVDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78
           K +     +  ++   G   LV  +D L+ W R+ SL  +TF  +CC +E M     RYD
Sbjct: 24  KDNEYLENMVKQLNEGGTKVLVGCLDDLINWGRSNSLWPLTFATSCCGIEFMAVGAARYD 83

Query: 79  LERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137
             RFGF   RASPRQ+D+++VAGT+T+KMA  L+R+YDQM +P+YVI++G CA  GG + 
Sbjct: 84  FARFGFEVARASPRQADMIMVAGTITHKMAPVLKRLYDQMADPKYVIAVGGCAISGGPFK 143

Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
            SY V+ G D+I+PVD+Y+PGCPP  EAL+YG++ LQ+K++
Sbjct: 144 KSYHVLNGVDKILPVDVYIPGCPPRPEALLYGMIQLQRKVK 184


>gi|21673597|ref|NP_661662.1| NADH dehydrogenase I, 20 kDa subunit [Chlorobium tepidum TLS]
 gi|81791547|sp|Q8KEC2|NUOB_CHLTE RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|21646711|gb|AAM72004.1| NADH dehydrogenase I, 20 kdA subunit [Chlorobium tepidum TLS]
          Length = 189

 Score =  228 bits (581), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 92/154 (59%), Positives = 118/154 (76%), Gaps = 1/154 (0%)

Query: 29  ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88
           + + I+++  LVTSVD ++ WAR  SL  M FGLACCA+EMM  +   YDLERFG  PR+
Sbjct: 4   LDARISNRNVLVTSVDNVMNWARLSSLWPMGFGLACCAIEMMATNASNYDLERFGIFPRS 63

Query: 89  SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGCD 147
           SPRQSD+MIVAGT+T KMA  +  +Y+QMPEPRYV+SMGSC+N GG Y H+ Y V++G D
Sbjct: 64  SPRQSDLMIVAGTVTMKMAERVVTLYEQMPEPRYVLSMGSCSNSGGPYWHHGYHVLKGVD 123

Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
           RI+PVD+YVPGCPP  EALI G++ +Q+ IR  G
Sbjct: 124 RIIPVDVYVPGCPPRPEALIGGLMKIQELIRMEG 157


>gi|224178049|ref|YP_002600947.1| 27 kDa subunit of NADH-ubiquinone oxidoreductase [Pyramimonas
           parkeae]
 gi|215882716|gb|ACJ71089.1| 27 kDa subunit of NADH-ubiquinone oxidoreductase [Pyramimonas
           parkeae]
          Length = 232

 Score =  228 bits (581), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 70/164 (42%), Positives = 112/164 (68%), Gaps = 2/164 (1%)

Query: 21  KVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLE 80
           K   + S+++ +++    + T+++ L  WAR  SL  + +G +CC +E       R+D +
Sbjct: 8   KNSLESSKVTEDLS-TNVIFTTLNDLHNWARLSSLWPLLYGTSCCFIEFASLIGSRFDFD 66

Query: 81  RFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YS 139
           RFG  PR+SPRQ+D++I AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   S
Sbjct: 67  RFGLVPRSSPRQADLIITAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDS 126

Query: 140 YSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           Y+ VRG D+++PVD+Y+PGCPP  EA+I  ++ L+KK+ +   +
Sbjct: 127 YTTVRGVDKLIPVDVYLPGCPPKPEAIIDAVIKLRKKVSQEERI 170


>gi|150004312|ref|YP_001299056.1| NADH dehydrogenase subunit B [Bacteroides vulgatus ATCC 8482]
 gi|294776877|ref|ZP_06742340.1| NADH-quinone oxidoreductase, B subunit [Bacteroides vulgatus PC510]
 gi|319644247|ref|ZP_07998760.1| NADH dehydrogenase subunit I B [Bacteroides sp. 3_1_40A]
 gi|238065064|sp|A6L170|NUOB_BACV8 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|149932736|gb|ABR39434.1| NADH dehydrogenase I chain B [Bacteroides vulgatus ATCC 8482]
 gi|294449353|gb|EFG17890.1| NADH-quinone oxidoreductase, B subunit [Bacteroides vulgatus PC510]
 gi|317384238|gb|EFV65210.1| NADH dehydrogenase subunit I B [Bacteroides sp. 3_1_40A]
          Length = 198

 Score =  228 bits (581), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 76/161 (47%), Positives = 110/161 (68%), Gaps = 3/161 (1%)

Query: 21  KVDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78
           K +     +  ++   G   LV  +D L+ W R+ SL  +TF  +CC +E M     RYD
Sbjct: 17  KDNEYLENMVKQLNEGGTKVLVGCLDDLINWGRSNSLWPLTFATSCCGIEFMAVGAARYD 76

Query: 79  LERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137
             RFGF   RASPRQ+D+++VAGT+T+KMA  L+R+YDQM +P+YVI++G CA  GG + 
Sbjct: 77  FARFGFEVARASPRQADMIMVAGTITHKMAPVLKRLYDQMADPKYVIAVGGCAISGGPFK 136

Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
            SY V+ G D+I+PVD+Y+PGCPP  EAL+YG++ LQ+K++
Sbjct: 137 KSYHVLNGVDKILPVDVYIPGCPPRPEALLYGMIQLQRKVK 177


>gi|110636931|ref|YP_677138.1| NADH:ubiquinone oxidoreductase [Cytophaga hutchinsonii ATCC 33406]
 gi|110279612|gb|ABG57798.1| NADH dehydrogenase subunit B [Cytophaga hutchinsonii ATCC 33406]
          Length = 184

 Score =  228 bits (581), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 97/161 (60%), Positives = 116/161 (72%), Gaps = 1/161 (0%)

Query: 21  KVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLE 80
           K     S +  +    G +V+ ++ ++ WAR  SL  M+FGLACCA+EMMQ     YDL+
Sbjct: 2   KNQTFMSLLDHKFGQGGIVVSQLEDVLNWARLSSLFPMSFGLACCAIEMMQTFTSGYDLD 61

Query: 81  RFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-S 139
           RFG  PR SPRQSDVMIVAGT+T KMA  +RR+Y+QMPEPRYVISMGSC+N GG Y    
Sbjct: 62  RFGVIPRPSPRQSDVMIVAGTVTFKMADRIRRLYEQMPEPRYVISMGSCSNCGGPYWEHG 121

Query: 140 YSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           Y VV+G DRIVPVDIYVPGCPP  EALI G L LQ+KIR+ 
Sbjct: 122 YHVVKGVDRIVPVDIYVPGCPPRPEALIGGFLKLQEKIRKE 162


>gi|34501411|ref|NP_904198.1| NADH dehydrogenase subunit K [Physcomitrella patens subsp. patens]
 gi|75294073|sp|Q6YXQ9|NDHK_PHYPA RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
 gi|34494781|dbj|BAC85048.1| NADH dehydrogenase 27 kD subunit [Physcomitrella patens subsp.
           patens]
          Length = 261

 Score =  228 bits (581), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 73/181 (40%), Positives = 113/181 (62%), Gaps = 1/181 (0%)

Query: 1   MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTF 60
           M L +      +  ++     +++     S++      ++T+ +    WAR  SL  + +
Sbjct: 1   MVLNSNYDNYKNKITNSMKPLINSVNPAFSNQENPNSVILTTFNDFTNWARLSSLWPLLY 60

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           G +CC +E       R+D +R+G  PR+SPRQ+D++I AGT+T KMA +L R+Y+QMPEP
Sbjct: 61  GTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLIITAGTVTMKMAPSLVRLYEQMPEP 120

Query: 121 RYVISMGSCANGGGYYH-YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           +YVI+MG+C   GG +   SYS VRG D+++PVDIY+PGCPP  EA+I  I+ L+KKI +
Sbjct: 121 KYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDIYLPGCPPKPEAIIDAIIKLRKKIAQ 180

Query: 180 V 180
            
Sbjct: 181 E 181


>gi|89895333|ref|YP_518820.1| NADH dehydrogenase I chain B [Desulfitobacterium hafniense Y51]
 gi|219669767|ref|YP_002460202.1| NADH dehydrogenase subunit B [Desulfitobacterium hafniense DCB-2]
 gi|122482325|sp|Q24UB6|NUOB_DESHY RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|238065122|sp|B8FRK6|NUOB_DESHD RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|89334781|dbj|BAE84376.1| NADH dehydrogenase I chain B [Desulfitobacterium hafniense Y51]
 gi|219540027|gb|ACL21766.1| NADH-quinone oxidoreductase, B subunit [Desulfitobacterium
           hafniense DCB-2]
          Length = 173

 Score =  228 bits (581), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 87/158 (55%), Positives = 115/158 (72%), Gaps = 1/158 (0%)

Query: 28  RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-P 86
           R +  +  K  L+TS+D+++ W R  S   +TFGLACCA+EMM A  PR D+ RFG+   
Sbjct: 10  REAEALMEKNVLLTSIDKVLNWGRGHSFWPVTFGLACCAIEMMAAGGPRVDISRFGYEVF 69

Query: 87  RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGC 146
           RASPR +DVMIVAGT T KMA  LR +YDQMPEP++VI+MGSCA+ GG +  SYS++ G 
Sbjct: 70  RASPRHADVMIVAGTCTRKMAPLLRMIYDQMPEPKWVIAMGSCASAGGPFADSYSMLTGV 129

Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           D+IVPVD+Y+PGCPP  E+L+YG+L LQ K+     V+
Sbjct: 130 DKIVPVDVYIPGCPPRPESLVYGLLQLQHKVNHPDKVR 167


>gi|260592325|ref|ZP_05857783.1| NADH dehydrogenase I, B subunit [Prevotella veroralis F0319]
 gi|260535712|gb|EEX18329.1| NADH dehydrogenase I, B subunit [Prevotella veroralis F0319]
          Length = 295

 Score =  227 bits (580), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 79/161 (49%), Positives = 115/161 (71%), Gaps = 3/161 (1%)

Query: 21  KVDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78
           K +   S+++SE+   G   ++ ++DQL+ W R+ SL  +TF  +CC +E M     RYD
Sbjct: 17  KDNDTLSKMASELNDGGTNLVLGNLDQLINWGRSNSLWSLTFATSCCGIEFMAVGCARYD 76

Query: 79  LERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137
             RFGF   R SPRQ+D+++ AGT+TNKMA AL+R+YD+M EP+YVI++G CA  GG + 
Sbjct: 77  FSRFGFEVTRNSPRQADLIMCAGTITNKMAPALKRLYDEMAEPKYVIAVGGCAISGGPFK 136

Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
            SY V+RG D I+PVD+Y+PGCPP  EA+IYG++ LQ+K++
Sbjct: 137 DSYHVMRGIDEIIPVDVYIPGCPPRPEAIIYGMMQLQRKVK 177


>gi|295697744|ref|YP_003590982.1| NADH-quinone oxidoreductase, B subunit [Bacillus tusciae DSM 2912]
 gi|295413346|gb|ADG07838.1| NADH-quinone oxidoreductase, B subunit [Bacillus tusciae DSM 2912]
          Length = 183

 Score =  227 bits (580), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 92/179 (51%), Positives = 124/179 (69%)

Query: 6   VNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACC 65
           +    + G       + +      S+++T  G LV++++QL  WAR+ SL  +TFGLACC
Sbjct: 1   MEMNPVPGSRPAGRVEFEGFSDEESADLTRAGVLVSTIEQLKAWARSNSLWPLTFGLACC 60

Query: 66  AVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVIS 125
           A+EMM      YDL+RFG   RASPRQSDVMIVAGT+T KM   LRR+YDQMP+P++V++
Sbjct: 61  AIEMMGTGASHYDLDRFGIIFRASPRQSDVMIVAGTVTKKMGPLLRRLYDQMPDPKWVVA 120

Query: 126 MGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           MGSCA  GG Y  SY+V++G D++VPVD+Y+PGCPP+  ALIYG+  LQ+KIR     K
Sbjct: 121 MGSCATAGGPYVRSYAVMKGVDQVVPVDVYIPGCPPSPPALIYGLNKLQEKIRMEARRK 179


>gi|119511864|ref|ZP_01630964.1| NADH dehydrogenase beta subunit [Nodularia spumigena CCY9414]
 gi|119463506|gb|EAW44443.1| NADH dehydrogenase beta subunit [Nodularia spumigena CCY9414]
          Length = 246

 Score =  227 bits (580), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 77/173 (44%), Positives = 113/173 (65%), Gaps = 4/173 (2%)

Query: 6   VNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACC 65
           +N K+ S      +  ++     I+ +++    ++T+VD L  WAR  SL  + FG ACC
Sbjct: 3   LNSKLTSPDKEQIINPIER--PAITQDLSE-NVILTTVDDLYNWARLSSLWPLLFGTACC 59

Query: 66  AVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVIS 125
            +E       R+D +RFG  PR+SPRQ+D++I AGT+T KMA  L R+Y+QMPEP+YVI+
Sbjct: 60  FIEFAALIGSRFDFDRFGLIPRSSPRQADLIITAGTITMKMAPQLVRLYEQMPEPKYVIA 119

Query: 126 MGSCANGGGYYH-YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
           MG+C   GG +   S + VRG D+++PVD+Y+PGCPP  EA+I  I+ L+KKI
Sbjct: 120 MGACTITGGMFSMDSPTAVRGVDKLIPVDVYLPGCPPRPEAIIDAIIKLRKKI 172


>gi|281419772|ref|ZP_06250771.1| NADH-quinone oxidoreductase chain B [Prevotella copri DSM 18205]
 gi|281406148|gb|EFB36828.1| NADH-quinone oxidoreductase chain B [Prevotella copri DSM 18205]
          Length = 241

 Score =  227 bits (580), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 76/176 (43%), Positives = 113/176 (64%), Gaps = 3/176 (1%)

Query: 6   VNQKIISGQSSCSLEKVDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLA 63
           VN++           K +    +I+ E+   G   +V S+D  + W R+ SL  +TFG +
Sbjct: 3   VNKRASIKSIPYDEFKDNDTLEKIAQELNEGGANVVVGSLDAAINWGRSNSLWSLTFGTS 62

Query: 64  CCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122
           CC +E M     RYD  RFGF   R SPRQ+D+++ AGT+TNKMA   +R+YD+M EP+Y
Sbjct: 63  CCGIEFMAVGCARYDFSRFGFEVTRNSPRQADLIMCAGTITNKMAPVFKRLYDEMAEPKY 122

Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           V+++G C   GG +  SY+VVRG   +VPVD+Y+PGCPP  EA++YG++ LQ+K++
Sbjct: 123 VVAVGGCTISGGPFKKSYNVVRGISELVPVDVYIPGCPPRPEAILYGMMQLQRKVK 178


>gi|282877800|ref|ZP_06286613.1| NADH-quinone oxidoreductase, B subunit [Prevotella buccalis ATCC
           35310]
 gi|281300116|gb|EFA92472.1| NADH-quinone oxidoreductase, B subunit [Prevotella buccalis ATCC
           35310]
          Length = 231

 Score =  227 bits (580), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 81/161 (50%), Positives = 109/161 (67%), Gaps = 3/161 (1%)

Query: 21  KVDADFSRISSEITHKGF--LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78
           K +    RI  E+   G   +  S+DQL+ W R  SL  +TF  +CC +E M     RYD
Sbjct: 17  KDNESLERIVDELHEGGVNVVTGSLDQLINWGRANSLWSLTFATSCCGIEFMAVGCARYD 76

Query: 79  LERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137
             RFGF   R SPRQ+D+++ AGT+TNKMA A RR+YD+M EP+YVI++G CA  GG + 
Sbjct: 77  FARFGFEVTRNSPRQADLIMCAGTITNKMAPAFRRLYDEMAEPKYVIAVGGCAISGGPFK 136

Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
            SY VVRG D IVPVD+++PGCPP  EA++YG++ LQ+KI+
Sbjct: 137 SSYHVVRGIDEIVPVDVFIPGCPPRPEAIMYGMMQLQRKIK 177


>gi|313156901|gb|EFR56339.1| NADH-quinone oxidoreductase, B subunit [Alistipes sp. HGB5]
          Length = 218

 Score =  227 bits (580), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 75/160 (46%), Positives = 111/160 (69%), Gaps = 3/160 (1%)

Query: 22  VDADFSRISSEI--THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDL 79
            +    ++ +E+   +   +V  +D+L+ W R+ SL  +TF  +CC +E M     RYD 
Sbjct: 19  DNEYLEKMVAELRDNNTNVIVGCLDELIEWGRSNSLWPLTFATSCCGIEFMAVGAARYDF 78

Query: 80  ERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY 138
            RFGF   RASPRQ+D ++VAGT+T+KMA  LRR+YDQM +P+YVI++G CA  GG +  
Sbjct: 79  ARFGFEVARASPRQADFIMVAGTITHKMAPVLRRLYDQMADPKYVIAVGGCAISGGPFKK 138

Query: 139 SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           SY V+ G DRI+PVD+Y+PGCPP  EA++YG++ LQ+K++
Sbjct: 139 SYHVLNGVDRILPVDVYIPGCPPRPEAMLYGLMQLQRKVK 178


>gi|307566084|ref|ZP_07628542.1| NADH-quinone oxidoreductase, B subunit [Prevotella amnii CRIS
           21A-A]
 gi|307345272|gb|EFN90651.1| NADH-quinone oxidoreductase, B subunit [Prevotella amnii CRIS
           21A-A]
          Length = 289

 Score =  227 bits (580), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 76/161 (47%), Positives = 114/161 (70%), Gaps = 3/161 (1%)

Query: 21  KVDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78
           K +    ++++++   G   ++ ++DQL+ W R+ SL  +TF  +CC +E M     RYD
Sbjct: 17  KDNDTLDKMAADLNDGGTNLVLGNLDQLINWGRSNSLWSLTFATSCCGIEFMSVGCARYD 76

Query: 79  LERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137
             RFGF   R SPRQ+D+++ AGT+TNKMA AL+R+YD+M EP+YVI++G CA  GG + 
Sbjct: 77  FSRFGFEVTRNSPRQADLIMCAGTITNKMAPALKRLYDEMAEPKYVIAVGGCAISGGPFK 136

Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
            SY V+RG D I+PVD+Y+PGCPP  EA+IYG++ LQ+K++
Sbjct: 137 NSYHVMRGIDEIIPVDVYIPGCPPRPEAIIYGMMQLQRKVK 177


>gi|258592356|emb|CBE68665.1| NADH-quinone oxidoreductase subunit 6 (NADH dehydrogenase I chain
           6) (NDH-1 subunit 6) [NC10 bacterium 'Dutch sediment']
          Length = 181

 Score =  227 bits (580), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 86/158 (54%), Positives = 117/158 (74%), Gaps = 2/158 (1%)

Query: 28  RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-P 86
           +   +   +G L+T++D LV WAR  S+   +FGLACCA+EMM     R+DL RFG    
Sbjct: 13  KEEEQEFERGLLLTTLDSLVNWARKSSIWPASFGLACCAIEMMATGASRFDLARFGAEVF 72

Query: 87  RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGC 146
           R SPRQSD+MIVAG ++ KMA  LRR+YDQMPEP++VI+MG+CA+ GG ++ +Y++V+G 
Sbjct: 73  RGSPRQSDLMIVAGRVSRKMAPVLRRIYDQMPEPKWVIAMGACASCGGIFN-TYTIVQGV 131

Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           D+IVPVD+YVPGCPP  E LI+GI+LLQ+KI +    K
Sbjct: 132 DQIVPVDVYVPGCPPRPEQLIHGIMLLQEKIAKERPSK 169


>gi|282881432|ref|ZP_06290106.1| NADH-quinone oxidoreductase, B subunit [Prevotella timonensis CRIS
           5C-B1]
 gi|281304658|gb|EFA96744.1| NADH-quinone oxidoreductase, B subunit [Prevotella timonensis CRIS
           5C-B1]
          Length = 231

 Score =  227 bits (579), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 81/161 (50%), Positives = 109/161 (67%), Gaps = 3/161 (1%)

Query: 21  KVDADFSRISSEITHKGF--LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78
           K +    RI  E+   G   +  S+DQL+ W R  SL  +TF  +CC +E M     RYD
Sbjct: 17  KDNESLERIVDELHEGGVNVVTGSLDQLINWGRANSLWSLTFATSCCGIEFMAVGCARYD 76

Query: 79  LERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137
             RFGF   R SPRQ+D+++ AGT+TNKMA A RR+YD+M EP+YVI++G CA  GG + 
Sbjct: 77  FARFGFEVTRNSPRQADLIMCAGTITNKMAPAFRRLYDEMAEPKYVIAVGGCAISGGPFK 136

Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
            SY VVRG D IVPVD+++PGCPP  EA++YG++ LQ+KI+
Sbjct: 137 SSYHVVRGIDEIVPVDVFIPGCPPRPEAIMYGMMQLQRKIK 177


>gi|219848534|ref|YP_002462967.1| NADH dehydrogenase subunit B [Chloroflexus aggregans DSM 9485]
 gi|238065029|sp|B8GA16|NUOB2_CHLAD RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName:
           Full=NADH dehydrogenase I subunit B 2; AltName:
           Full=NDH-1 subunit B 2
 gi|219542793|gb|ACL24531.1| NADH-quinone oxidoreductase, B subunit [Chloroflexus aggregans DSM
           9485]
          Length = 264

 Score =  227 bits (579), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 83/159 (52%), Positives = 112/159 (70%), Gaps = 1/159 (0%)

Query: 24  ADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFG 83
           AD      E+  +G L+T+V++   W R  S+  M FGLACCA+EMM   + RYD+ RFG
Sbjct: 2   ADIDPNQLELERQGILLTTVNRFYNWGRRSSIWPMAFGLACCAIEMMAFGLSRYDVARFG 61

Query: 84  F-APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142
               RASPRQ+D+MIVAGT+T KMA  + R+Y+QM EPRYVISMG+CA  GG +   Y+V
Sbjct: 62  AELFRASPRQADLMIVAGTVTKKMAPQVVRLYNQMAEPRYVISMGACATSGGPFRDGYNV 121

Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
           +RG D ++PVD+YVPGCPP  EAL++ ++ LQ++I R  
Sbjct: 122 LRGIDLLIPVDVYVPGCPPRPEALLHALMTLQEQIDRQK 160


>gi|317130743|ref|YP_004097025.1| NADH-quinone oxidoreductase subunit beta [Bacillus cellulosilyticus
           DSM 2522]
 gi|315475691|gb|ADU32294.1| NADH-quinone oxidoreductase, B subunit [Bacillus cellulosilyticus
           DSM 2522]
          Length = 175

 Score =  227 bits (579), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 92/160 (57%), Positives = 113/160 (70%)

Query: 21  KVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLE 80
           K    +     E   +    T V+QL  W+RT SL  ++FGLACCA+EMM     RYD +
Sbjct: 7   KDTEQYDPRILEDIKRNVFFTKVEQLKAWSRTRSLWPLSFGLACCAIEMMGTGAARYDFD 66

Query: 81  RFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSY 140
           RFG   RASPR SDVMIVAGT+T+KMA  LR +YDQMPEP++VISMGSCA  GG Y  +Y
Sbjct: 67  RFGVIFRASPRHSDVMIVAGTVTSKMAPVLRTLYDQMPEPKWVISMGSCATCGGPYKEAY 126

Query: 141 SVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           SVV G D++VPVD+YVPGCPPT  AL+ G+ LL++KIRR 
Sbjct: 127 SVVNGVDKVVPVDVYVPGCPPTPPALLDGVDLLREKIRRE 166


>gi|89095634|ref|ZP_01168528.1| NADH dehydrogenase subunit B [Bacillus sp. NRRL B-14911]
 gi|89089380|gb|EAR68487.1| NADH dehydrogenase subunit B [Bacillus sp. NRRL B-14911]
          Length = 177

 Score =  227 bits (578), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 91/161 (56%), Positives = 116/161 (72%), Gaps = 3/161 (1%)

Query: 21  KVDADFSRISSEI---THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRY 77
           ++D     I+ E      +   + +++Q+  WAR+ SL  MTFGLACCA+EMM      Y
Sbjct: 7   QMDLKLENITPEEMQELQRNVFMATLEQIKAWARSNSLWPMTFGLACCAIEMMGVGSSHY 66

Query: 78  DLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137
           DL+RFG   R SPRQSDVMIV+GT+T KMA  +RR+YDQMPEP++VI+MGSCA  GG Y 
Sbjct: 67  DLDRFGSFFRTSPRQSDVMIVSGTVTKKMAPIVRRLYDQMPEPKWVIAMGSCATAGGPYV 126

Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
            SYSVV+G D+IVPVD+Y+PGCPP   ALIYGI  L++KIR
Sbjct: 127 KSYSVVKGVDQIVPVDVYIPGCPPNPAALIYGINKLKEKIR 167


>gi|194333676|ref|YP_002015536.1| NADH dehydrogenase subunit B [Prosthecochloris aestuarii DSM 271]
 gi|238065190|sp|B4S752|NUOB_PROA2 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|194311494|gb|ACF45889.1| NADH-quinone oxidoreductase, B subunit [Prosthecochloris aestuarii
           DSM 271]
          Length = 190

 Score =  227 bits (578), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 91/151 (60%), Positives = 117/151 (77%), Gaps = 1/151 (0%)

Query: 29  ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88
           + ++I++   LVTSVD ++ WAR  SL  M FGLACCA+EMM  +   YDLERFG  PR+
Sbjct: 4   LDAKISNHNVLVTSVDNVLNWARLSSLWPMGFGLACCAIEMMATNASNYDLERFGIFPRS 63

Query: 89  SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGCD 147
           SPRQSD+MIVAGT+T KMA  + R+Y+QMPEPRYV+SMGSC+N GG Y  + Y V++G D
Sbjct: 64  SPRQSDLMIVAGTVTMKMAERVIRLYEQMPEPRYVLSMGSCSNCGGPYWKHGYHVLKGVD 123

Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           RI+PVD+YVPGCPP  EALI G++ +Q+ IR
Sbjct: 124 RIIPVDVYVPGCPPRPEALIGGLMKVQELIR 154


>gi|167752198|ref|ZP_02424325.1| hypothetical protein ALIPUT_00440 [Alistipes putredinis DSM 17216]
 gi|167660439|gb|EDS04569.1| hypothetical protein ALIPUT_00440 [Alistipes putredinis DSM 17216]
          Length = 219

 Score =  227 bits (578), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 75/160 (46%), Positives = 110/160 (68%), Gaps = 3/160 (1%)

Query: 22  VDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDL 79
            +    ++  E+   G   ++  +D+++ W R+ SL  +TF  +CC +E M     RYD 
Sbjct: 18  DNEYLEKMIEELRANGTNVVMGCLDEVINWGRSNSLWPLTFATSCCGIEFMAVGAARYDF 77

Query: 80  ERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY 138
            RFGF   RASPRQ+D ++VAGT+T+KMA  LRR+YDQM +P+YVI+ GSCA  GG +  
Sbjct: 78  ARFGFEVARASPRQADFIMVAGTITHKMAPVLRRLYDQMADPKYVIATGSCAVSGGPFKK 137

Query: 139 SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           SY VV G D+I+PVD+Y+PGCPP  EA++YG++ LQ+K++
Sbjct: 138 SYHVVNGVDKILPVDVYIPGCPPRPEAMLYGMMQLQRKVK 177


>gi|16126198|ref|NP_420762.1| NADH dehydrogenase subunit B [Caulobacter crescentus CB15]
 gi|81621086|sp|Q9A6X1|NUOB_CAUCR RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|13423414|gb|AAK23930.1| NADH dehydrogenase I, B subunit [Caulobacter crescentus CB15]
          Length = 193

 Score =  227 bits (578), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 133/162 (82%), Positives = 147/162 (90%)

Query: 23  DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82
           D  F  +S ++  KGF+  + D L+TWARTGSLMWMTFGLACCAVEMMQASMPRYDLER+
Sbjct: 31  DPFFDGVSQQLADKGFITAAADDLITWARTGSLMWMTFGLACCAVEMMQASMPRYDLERY 90

Query: 83  GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142
           GFAPRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYY+YSYSV
Sbjct: 91  GFAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYYYSYSV 150

Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           VRGCDR+VPVDIYVPGCPPTAEAL+YG+L LQKKIRR G ++
Sbjct: 151 VRGCDRVVPVDIYVPGCPPTAEALVYGVLQLQKKIRRTGTIE 192


>gi|311033318|ref|ZP_07711408.1| NADH dehydrogenase subunit B [Bacillus sp. m3-13]
          Length = 170

 Score =  227 bits (578), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 88/153 (57%), Positives = 112/153 (73%)

Query: 26  FSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA 85
            S    E   +   +T++++L  WAR+ S+  MTFGLACCA+EMM      YDL+RFG  
Sbjct: 8   ISPEEMEELKQTVFLTTLEELKAWARSNSMWPMTFGLACCAIEMMGVGSSHYDLDRFGSF 67

Query: 86  PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRG 145
            R SPRQSD MIV+GT+T KMA  L+R+YDQMPEP++VI+MGSCA  GG Y  SY+VV+G
Sbjct: 68  FRTSPRQSDCMIVSGTVTKKMAPVLKRLYDQMPEPKWVIAMGSCATAGGPYIKSYAVVKG 127

Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
            D+IVPVD+Y+PGCPP   ALIYGI  L++KIR
Sbjct: 128 VDQIVPVDVYIPGCPPNPAALIYGINKLREKIR 160


>gi|124006095|ref|ZP_01690931.1| NADH-ubiquinone oxidoreductase 20 kda subunit [Microscilla marina
           ATCC 23134]
 gi|123988272|gb|EAY27925.1| NADH-ubiquinone oxidoreductase 20 kda subunit [Microscilla marina
           ATCC 23134]
          Length = 174

 Score =  227 bits (578), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 89/154 (57%), Positives = 109/154 (70%), Gaps = 1/154 (0%)

Query: 29  ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88
           +  +      ++T  + L+ WAR  SL  M FGLACCA+EMM      YDL+RFG  PRA
Sbjct: 4   LDQQFEQDNIILTKAEDLINWARLSSLWPMGFGLACCAIEMMSTFAAGYDLDRFGVFPRA 63

Query: 89  SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCD 147
           SPRQSDVMIVAGT+T KMA  ++R+Y+QM EPRYVISMGSC+N GG Y    Y VV+G D
Sbjct: 64  SPRQSDVMIVAGTVTFKMADRIKRLYEQMAEPRYVISMGSCSNCGGPYWEHGYHVVKGVD 123

Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
           RI+PVD+YVPGCPP  EALI G + LQ+K+R   
Sbjct: 124 RIIPVDVYVPGCPPRPEALIGGFMKLQEKVRNER 157


>gi|217424871|ref|ZP_03456368.1| putative NADH-quinone oxidoreductase, B subunit [Burkholderia
           pseudomallei 576]
 gi|217392327|gb|EEC32352.1| putative NADH-quinone oxidoreductase, B subunit [Burkholderia
           pseudomallei 576]
          Length = 264

 Score =  227 bits (578), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 107/151 (70%), Positives = 126/151 (83%)

Query: 32  EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPR 91
            +   GF+VT++D  +  A+  SL +MTFGLACCAVEMM A+  RYD++RFG  PRASPR
Sbjct: 104 TLEKDGFIVTTLDAAMAAAQKNSLWYMTFGLACCAVEMMHAAGARYDMDRFGMIPRASPR 163

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
           Q D+MIVAGTLTNKMA A+RRVYDQM EPRYV+SMGSCANGGGYYHYSYSVVRGCDRIVP
Sbjct: 164 QCDLMIVAGTLTNKMAPAMRRVYDQMAEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVP 223

Query: 152 VDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
           VD+YVPGCPPTAEAL+YG++ LQ+K+     
Sbjct: 224 VDVYVPGCPPTAEALVYGLMQLQRKVAERST 254


>gi|223931071|ref|YP_002586932.1| NADH-plastoquinone oxidoreductase subunit K [Syntrichia ruralis]
 gi|219562285|gb|ACL27616.1| NADH-plastoquinone oxidoreductase subunit K [Syntrichia ruralis]
          Length = 249

 Score =  227 bits (578), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 70/156 (44%), Positives = 106/156 (67%), Gaps = 1/156 (0%)

Query: 26  FSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA 85
            + +S++      ++T+ +    WAR  SL  + +G +CC +E       R+D +R+G  
Sbjct: 22  INSLSNQKNPNSIILTTFNDFSNWARLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLV 81

Query: 86  PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVR 144
           PR+SPRQ+D++I AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VR
Sbjct: 82  PRSSPRQADLIITAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVR 141

Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           G D+++PVDIY+PGCPP  EA+I  I+ L+KK+ + 
Sbjct: 142 GVDKLIPVDIYLPGCPPKPEAIIDAIIKLRKKVAQE 177


>gi|294661316|ref|YP_003573192.1| hypothetical protein Aasi_1809 [Candidatus Amoebophilus asiaticus
           5a2]
 gi|227336467|gb|ACP21064.1| hypothetical protein Aasi_1809 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 173

 Score =  227 bits (578), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 93/161 (57%), Positives = 119/161 (73%), Gaps = 1/161 (0%)

Query: 19  LEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78
           + +++     IS++    G ++ +++ L+ WA   SL  +TFGLACCA+EMM A    YD
Sbjct: 7   INQINNYMDTISNKTGEGGVIMVALEDLLNWAERSSLWPITFGLACCAIEMMGAYASHYD 66

Query: 79  LERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY 138
           L+R G  PR SPRQ+DVMIV+GT+T KMA ++RR+YDQMPEPRYVISMGSCAN GG Y  
Sbjct: 67  LDRLGVIPRNSPRQADVMIVSGTVTFKMADSIRRLYDQMPEPRYVISMGSCANCGGPYWQ 126

Query: 139 -SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
             Y VV+G DRI+PVD+YVPGCPP  EALI GIL LQ+KI+
Sbjct: 127 HGYHVVKGVDRIIPVDVYVPGCPPRPEALIGGILKLQEKIK 167


>gi|95928442|ref|ZP_01311190.1| NADH-quinone oxidoreductase, B subunit [Desulfuromonas acetoxidans
           DSM 684]
 gi|95135713|gb|EAT17364.1| NADH-quinone oxidoreductase, B subunit [Desulfuromonas acetoxidans
           DSM 684]
          Length = 179

 Score =  227 bits (578), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 79/150 (52%), Positives = 112/150 (74%), Gaps = 1/150 (0%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           +     +  S+D++V W+R+ SL  MTFGLACCA+EMM     R+DL+R G   RASPRQ
Sbjct: 17  VLGNNIMTASLDKVVNWSRSRSLWPMTFGLACCAIEMMATGAARFDLDRMGVLFRASPRQ 76

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           +DV+I+AGT+T+KM   +  VY+QMPEP+YVI+MG+CA+ GG +  +YSV++G D+ +PV
Sbjct: 77  ADVIIIAGTVTHKMLPVIETVYEQMPEPKYVIAMGACASSGGVF-DTYSVLQGIDQALPV 135

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
           D+Y+PGCPP  E L+YG++ LQ+KI R  N
Sbjct: 136 DVYIPGCPPRPEGLLYGLMKLQEKIMRERN 165


>gi|172072907|ref|YP_001806668.1| NADH dehydrogenase subunit K [Cryptomeria japonica]
 gi|171854926|dbj|BAG16666.1| NADH-plastoquinone oxidoreductase subunit K [Cryptomeria japonica]
 gi|239794295|dbj|BAH73292.1| NADH-plastoquinone oxidoreductase subunit K [Cryptomeria japonica]
 gi|239794377|dbj|BAH73373.1| NADH-plastoquinone oxidoreductase subunit K [Cryptomeria japonica]
          Length = 268

 Score =  227 bits (578), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 72/162 (44%), Positives = 108/162 (66%), Gaps = 1/162 (0%)

Query: 20  EKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDL 79
             ++   S +  + T    + T+++ L  WAR  SL  + +G +CC +E       R+D 
Sbjct: 29  PAINPIESSLLDQTTSNSVISTTLNDLSNWARLSSLWPLLYGTSCCFIEFASLIGSRFDF 88

Query: 80  ERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-Y 138
           +R+G  PR+SPRQ+D++I AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   
Sbjct: 89  DRYGLVPRSSPRQADLLITAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTD 148

Query: 139 SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           SYS VRG D+++PVDIY+PGCPP  EA+I  I+ L++KI + 
Sbjct: 149 SYSTVRGVDKLIPVDIYLPGCPPKPEAIIDAIIKLREKIAQE 190


>gi|221234969|ref|YP_002517405.1| NADH dehydrogenase subunit B [Caulobacter crescentus NA1000]
 gi|238055282|sp|B8GWV5|NUOB_CAUCN RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|220964141|gb|ACL95497.1| NADH-quinone oxidoreductase chain B [Caulobacter crescentus NA1000]
          Length = 200

 Score =  226 bits (577), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 133/162 (82%), Positives = 147/162 (90%)

Query: 23  DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82
           D  F  +S ++  KGF+  + D L+TWARTGSLMWMTFGLACCAVEMMQASMPRYDLER+
Sbjct: 38  DPFFDGVSQQLADKGFITAAADDLITWARTGSLMWMTFGLACCAVEMMQASMPRYDLERY 97

Query: 83  GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142
           GFAPRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYY+YSYSV
Sbjct: 98  GFAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYYYSYSV 157

Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           VRGCDR+VPVDIYVPGCPPTAEAL+YG+L LQKKIRR G ++
Sbjct: 158 VRGCDRVVPVDIYVPGCPPTAEALVYGVLQLQKKIRRTGTIE 199


>gi|218527891|sp|A2CI36|NDHK_CHLAT RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
          Length = 274

 Score =  226 bits (577), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 72/172 (41%), Positives = 113/172 (65%), Gaps = 1/172 (0%)

Query: 14  QSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQAS 73
           Q   +  K  ++ +   ++      ++T+++ L  WAR  SL  + +G +CC +E     
Sbjct: 40  QKRETSGKELSEATPQVTQSLSNQLILTTLNDLYNWARLSSLWPLLYGTSCCFIEFASLL 99

Query: 74  MPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGG 133
             R+D +RFG  PR+SPRQ+D++I AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   G
Sbjct: 100 GSRFDFDRFGLVPRSSPRQADLIITAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITG 159

Query: 134 GYYH-YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           G +   SYS VRG D+++PVD+Y+PGCPP  EA+I  ++ L+KK+ +   V+
Sbjct: 160 GMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEAIIDAVIKLRKKVAQEDFVE 211


>gi|124112067|ref|YP_001019118.1| 27 kDa subunit of NADH-ubiquinone oxidoreductase [Chlorokybus
           atmophyticus]
 gi|124012183|gb|ABM87958.1| 27 kDa subunit of NADH-ubiquinone oxidoreductase [Chlorokybus
           atmophyticus]
          Length = 281

 Score =  226 bits (577), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 72/172 (41%), Positives = 113/172 (65%), Gaps = 1/172 (0%)

Query: 14  QSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQAS 73
           Q   +  K  ++ +   ++      ++T+++ L  WAR  SL  + +G +CC +E     
Sbjct: 47  QKRETSGKELSEATPQVTQSLSNQLILTTLNDLYNWARLSSLWPLLYGTSCCFIEFASLL 106

Query: 74  MPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGG 133
             R+D +RFG  PR+SPRQ+D++I AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   G
Sbjct: 107 GSRFDFDRFGLVPRSSPRQADLIITAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITG 166

Query: 134 GYYH-YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           G +   SYS VRG D+++PVD+Y+PGCPP  EA+I  ++ L+KK+ +   V+
Sbjct: 167 GMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEAIIDAVIKLRKKVAQEDFVE 218


>gi|206889677|ref|YP_002248748.1| NADH-quinone oxidoreductase chain b 2 [Thermodesulfovibrio
           yellowstonii DSM 11347]
 gi|238065023|sp|B5YKI3|NUOB1_THEYD RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName:
           Full=NADH dehydrogenase I subunit B 1; AltName:
           Full=NDH-1 subunit B 1
 gi|206741615|gb|ACI20672.1| NADH-quinone oxidoreductase chain b 2 [Thermodesulfovibrio
           yellowstonii DSM 11347]
          Length = 199

 Score =  226 bits (577), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 82/162 (50%), Positives = 114/162 (70%), Gaps = 1/162 (0%)

Query: 23  DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82
             +  +    +     ++T++D++ +W R  SL  +TFGLACCA+EMM  +   YDL+RF
Sbjct: 11  PVEIEQGIKIVPAANTIITTLDKIASWGRCSSLWPLTFGLACCAIEMMATAASHYDLDRF 70

Query: 83  GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142
           G   RA+PRQ+DVMI+AGT+T KMA  +  +Y QMPEPRYVI+MGSCA  GG ++ +YS 
Sbjct: 71  GIIMRATPRQADVMIIAGTVTKKMAPVIVNLYHQMPEPRYVIAMGSCACSGGIFN-TYST 129

Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           V+G D I+PVD+Y+PGCPP  EALI G+L LQ+KI+   + K
Sbjct: 130 VQGVDEILPVDVYIPGCPPRPEALIEGLLKLQEKIKTEPHKK 171


>gi|163847546|ref|YP_001635590.1| NADH dehydrogenase subunit B [Chloroflexus aurantiacus J-10-fl]
 gi|222525396|ref|YP_002569867.1| NADH dehydrogenase subunit B [Chloroflexus sp. Y-400-fl]
 gi|238065006|sp|A9WED9|NUOB1_CHLAA RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName:
           Full=NADH dehydrogenase I subunit B 1; AltName:
           Full=NDH-1 subunit B 1
 gi|238065008|sp|B9LGT9|NUOB1_CHLSY RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName:
           Full=NADH dehydrogenase I subunit B 1; AltName:
           Full=NDH-1 subunit B 1
 gi|163668835|gb|ABY35201.1| NADH-quinone oxidoreductase, B subunit [Chloroflexus aurantiacus
           J-10-fl]
 gi|222449275|gb|ACM53541.1| NADH-quinone oxidoreductase, B subunit [Chloroflexus sp. Y-400-fl]
          Length = 264

 Score =  226 bits (577), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 82/159 (51%), Positives = 112/159 (70%), Gaps = 1/159 (0%)

Query: 24  ADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFG 83
           A+      E+  +G L+T+V++   W R  S+  M FGLACCA+EMM   + RYD+ RFG
Sbjct: 2   AEIDPTQLELERQGILLTTVNRFYNWGRRSSIWPMAFGLACCAIEMMAFGLSRYDVARFG 61

Query: 84  F-APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142
               RASPRQ+D+MIVAGT+T KMA  + R+Y+QM EPRYVISMG+CA  GG +   Y+V
Sbjct: 62  AELFRASPRQADLMIVAGTVTKKMAPQVVRLYNQMAEPRYVISMGACATSGGPFRDGYNV 121

Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
           +RG D ++PVD+YVPGCPP  EAL++ ++ LQ++I R  
Sbjct: 122 LRGIDLLIPVDVYVPGCPPRPEALLHALMTLQEQIDRQK 160


>gi|218527900|sp|B1VKF5|NDHK_CRYJA RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
          Length = 238

 Score =  226 bits (577), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 72/155 (46%), Positives = 106/155 (68%), Gaps = 1/155 (0%)

Query: 27  SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP 86
           S +  + T    + T+++ L  WAR  SL  + +G +CC +E       R+D +R+G  P
Sbjct: 6   SSLLDQTTSNSVISTTLNDLSNWARLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVP 65

Query: 87  RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRG 145
           R+SPRQ+D++I AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG
Sbjct: 66  RSSPRQADLLITAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRG 125

Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
            D+++PVDIY+PGCPP  EA+I  I+ L++KI + 
Sbjct: 126 VDKLIPVDIYLPGCPPKPEAIIDAIIKLREKIAQE 160


>gi|281424343|ref|ZP_06255256.1| NADH dehydrogenase I, B subunit [Prevotella oris F0302]
 gi|281401612|gb|EFB32443.1| NADH dehydrogenase I, B subunit [Prevotella oris F0302]
          Length = 240

 Score =  226 bits (577), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 75/161 (46%), Positives = 111/161 (68%), Gaps = 3/161 (1%)

Query: 21  KVDADFSRISSEITHKGF--LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78
           K +    +I+ E+   G   +V S+DQ + W R+ SL  +TFG +CC +E M     RYD
Sbjct: 17  KDNDSLEKITQELNEGGVNVIVGSLDQAINWGRSNSLWSLTFGTSCCGIEFMAVGCARYD 76

Query: 79  LERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137
             RFGF   R SPRQ+D+++ AGT+TNKMA   +R+YD++ EP+YV+++G C   GG + 
Sbjct: 77  FSRFGFEVTRNSPRQADLIMCAGTITNKMAPVFKRLYDEIAEPKYVVAVGGCTISGGPFK 136

Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
            SY+VVRG D +VPVD+Y+PGCPP  EA++YG++ LQ+K++
Sbjct: 137 KSYNVVRGIDELVPVDVYIPGCPPRPEAILYGMMQLQRKVK 177


>gi|313679586|ref|YP_004057325.1| NADH dehydrogenase subunit b [Oceanithermus profundus DSM 14977]
 gi|313152301|gb|ADR36152.1| NADH dehydrogenase subunit B [Oceanithermus profundus DSM 14977]
          Length = 179

 Score =  226 bits (577), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 87/154 (56%), Positives = 115/154 (74%), Gaps = 2/154 (1%)

Query: 26  FSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA 85
           F R   E+  +G L T++++LV W R+ SL  +TFGLACCA+EMM +S  R DL RFG  
Sbjct: 7   FERDVQELEREGILFTTLEKLVAWGRSNSLWPVTFGLACCAIEMMASSNARNDLSRFGSE 66

Query: 86  -PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR 144
             RASPRQ+DVMIVAG L+ KMA  +RRVYDQM +P++VI+MG+CA  GG ++  Y++V+
Sbjct: 67  VFRASPRQADVMIVAGRLSKKMAPVMRRVYDQMGDPKWVIAMGACAASGGMFNN-YAIVQ 125

Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
             + +VPVD+YVPGCPP  EALIY ++ LQKKIR
Sbjct: 126 SVESVVPVDVYVPGCPPRPEALIYAVMQLQKKIR 159


>gi|126454466|ref|YP_001067829.1| putative NADH-quinone oxidoreductase, B subunit [Burkholderia
           pseudomallei 1106a]
 gi|126228108|gb|ABN91648.1| putative NADH-quinone oxidoreductase, B subunit [Burkholderia
           pseudomallei 1106a]
          Length = 262

 Score =  226 bits (577), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 107/151 (70%), Positives = 126/151 (83%)

Query: 32  EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPR 91
            +   GF+VT++D  +  A+  SL +MTFGLACCAVEMM A+  RYD++RFG  PRASPR
Sbjct: 102 TLEKDGFIVTTLDAAMAAAQKNSLWYMTFGLACCAVEMMHAAGARYDMDRFGMIPRASPR 161

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
           Q D+MIVAGTLTNKMA A+RRVYDQM EPRYV+SMGSCANGGGYYHYSYSVVRGCDRIVP
Sbjct: 162 QCDLMIVAGTLTNKMAPAMRRVYDQMAEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVP 221

Query: 152 VDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
           VD+YVPGCPPTAEAL+YG++ LQ+K+     
Sbjct: 222 VDVYVPGCPPTAEALVYGLMQLQRKVAERST 252


>gi|295689628|ref|YP_003593321.1| NADH-quinone oxidoreductase subunit B [Caulobacter segnis ATCC
           21756]
 gi|295431531|gb|ADG10703.1| NADH-quinone oxidoreductase, B subunit [Caulobacter segnis ATCC
           21756]
          Length = 192

 Score =  226 bits (576), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 133/162 (82%), Positives = 147/162 (90%)

Query: 23  DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82
           D  F  +S ++  KGF+  + D L+TWARTGSLMWMTFGLACCAVEMMQASMPRYDLER+
Sbjct: 30  DPFFDGVSQQLADKGFITAAADDLITWARTGSLMWMTFGLACCAVEMMQASMPRYDLERY 89

Query: 83  GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142
           GFAPRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYY+YSYSV
Sbjct: 90  GFAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYYYSYSV 149

Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           VRGCDR+VPVDIYVPGCPPTAEAL+YG+L LQKKIRR G ++
Sbjct: 150 VRGCDRVVPVDIYVPGCPPTAEALVYGVLQLQKKIRRTGTIE 191


>gi|150017836|ref|YP_001310090.1| NADH-quinone oxidoreductase, B subunit [Clostridium beijerinckii
           NCIMB 8052]
 gi|238055288|sp|A6LXQ4|NUOB_CLOB8 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|149904301|gb|ABR35134.1| NADH-quinone oxidoreductase, B subunit [Clostridium beijerinckii
           NCIMB 8052]
          Length = 169

 Score =  226 bits (576), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 83/164 (50%), Positives = 114/164 (69%), Gaps = 1/164 (0%)

Query: 21  KVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLE 80
           +V+    +   E   K  ++T +D  + + R  S   +TFGLACCA+EMM A   RYD+ 
Sbjct: 2   EVNFKQDKEIQEQIEKNIILTKLDDTLNYFRAHSFWPLTFGLACCAIEMMAAGGARYDIA 61

Query: 81  RFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS 139
           RFG+   RASPRQ+D+MIVAGT+T KMA  ++++YDQMPEP++VI+MGSCA  GG +  S
Sbjct: 62  RFGYEVFRASPRQADLMIVAGTITEKMAPIVKKIYDQMPEPKWVIAMGSCATSGGPFVDS 121

Query: 140 YSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           Y+VV G D  +PVD+Y+PGCPP  EALI+G+L L++KI     V
Sbjct: 122 YNVVPGADTFLPVDVYIPGCPPRPEALIHGLLTLKEKIIHPKEV 165


>gi|301107946|ref|XP_002903055.1| NADH ubiquinone oxidoreductase, putative [Phytophthora infestans
           T30-4]
 gi|262098173|gb|EEY56225.1| NADH ubiquinone oxidoreductase, putative [Phytophthora infestans
           T30-4]
          Length = 155

 Score =  226 bits (576), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 98/146 (67%), Positives = 123/146 (84%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           ++V+ +D L+ W++  SL  ++FGLACCAVEMM  +  RYD ER G   RASPR +DVMI
Sbjct: 4   YVVSRLDDLMNWSKKSSLWPLSFGLACCAVEMMHTAGSRYDFERMGLLFRASPRCTDVMI 63

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGT+TNKMA ALRR+YDQMPEP++VISMGSCANGGGYYHYSYSVVRG +RI+PVDIYVP
Sbjct: 64  VAGTVTNKMAPALRRIYDQMPEPKFVISMGSCANGGGYYHYSYSVVRGVNRILPVDIYVP 123

Query: 158 GCPPTAEALIYGILLLQKKIRRVGNV 183
           GCPPTAEAL++G++ LQKK++   ++
Sbjct: 124 GCPPTAEALLFGVMQLQKKLKGSKSL 149


>gi|253570156|ref|ZP_04847565.1| NADH-quinone oxidoreductase [Bacteroides sp. 1_1_6]
 gi|251840537|gb|EES68619.1| NADH-quinone oxidoreductase [Bacteroides sp. 1_1_6]
          Length = 197

 Score =  226 bits (576), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 75/160 (46%), Positives = 108/160 (67%), Gaps = 3/160 (1%)

Query: 22  VDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDL 79
            +    ++  E+   G    +  +D LV W R+ SL  +TF  +CC +E M     RYD+
Sbjct: 19  DNESLEKLVKELNAGGANVFLGVLDDLVNWGRSNSLWPLTFATSCCGIEFMALGAARYDM 78

Query: 80  ERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY 138
            RFGF   RASPRQ+D+++V GT+TNKMA  L+R+YDQMP+P+YV+++G CA  GG +  
Sbjct: 79  ARFGFEVARASPRQADMIMVCGTITNKMAPVLKRLYDQMPDPKYVVAVGGCAVSGGPFKK 138

Query: 139 SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           SY VV G D+I+PVD+Y+PGCPP  EA  YG++ LQ+K++
Sbjct: 139 SYHVVNGVDKILPVDVYIPGCPPRPEAFYYGMMQLQRKVK 178


>gi|332706504|ref|ZP_08426565.1| NADH-quinone oxidoreductase, B subunit [Lyngbya majuscula 3L]
 gi|332354388|gb|EGJ33867.1| NADH-quinone oxidoreductase, B subunit [Lyngbya majuscula 3L]
          Length = 248

 Score =  225 bits (575), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 79/188 (42%), Positives = 121/188 (64%), Gaps = 9/188 (4%)

Query: 3   LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62
           LT  +  I   Q++  L  ++   ++++ +++    ++T+VD L  WAR  SL  M +G 
Sbjct: 5   LTKDSAAIEQQQTNKILNPIER--TQVTQDLSE-NVILTTVDDLYNWARLSSLWPMLYGT 61

Query: 63  ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122
           ACC +E       R+D +RFG  PR+SPRQ+D++I AGT+T KM  AL R+Y+QMPEP+Y
Sbjct: 62  ACCFIEFAAMIGSRFDFDRFGLVPRSSPRQADLIITAGTITMKMGPALVRLYEQMPEPKY 121

Query: 123 VISMGSCANGGGYYH-YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKK----- 176
           VI+MG+C   GG +   S + VRG D+++PVD+Y+PGCPP  EA++  I+ L+KK     
Sbjct: 122 VIAMGACTITGGMFSVDSPTAVRGVDKLIPVDVYIPGCPPRPEAIMDAIVKLRKKVANES 181

Query: 177 IRRVGNVK 184
           I+  G +K
Sbjct: 182 IQERGQLK 189


>gi|237714284|ref|ZP_04544765.1| trifunctional NADH dehydrogenase I subunit B/C/D [Bacteroides sp.
           D1]
 gi|229445776|gb|EEO51567.1| trifunctional NADH dehydrogenase I subunit B/C/D [Bacteroides sp.
           D1]
          Length = 207

 Score =  225 bits (575), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 73/160 (45%), Positives = 107/160 (66%), Gaps = 3/160 (1%)

Query: 22  VDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDL 79
            +    ++  E+   G    +  +D  + W R+ SL  +TF  +CC +E M     RYD+
Sbjct: 26  DNESLEKLVKELNAGGANVALGVLDDFINWGRSNSLWPLTFATSCCGIEFMALGAARYDM 85

Query: 80  ERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY 138
            RFGF   RASPRQ+D+++V GT+TNKMA  L+R+YDQMP+P+YV+++G CA  GG +  
Sbjct: 86  ARFGFEVARASPRQADMIMVCGTITNKMAPVLKRLYDQMPDPKYVVAVGGCAVSGGPFKK 145

Query: 139 SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           SY VV G D+I+PVD+Y+PGCPP  EA  YG++ LQ+K++
Sbjct: 146 SYHVVNGVDKILPVDVYIPGCPPRPEAFYYGMMQLQRKVK 185


>gi|46200221|ref|YP_005888.1| NADH-quinone oxidoreductase chain B [Thermus thermophilus HB27]
 gi|55980054|ref|YP_143351.1| NADH dehydrogenase subunit B [Thermus thermophilus HB8]
 gi|2499331|sp|Q56218|NQO6_THET8 RecName: Full=NADH-quinone oxidoreductase subunit 6; AltName:
           Full=NADH dehydrogenase I subunit 6; AltName: Full=NDH-1
           subunit 6
 gi|81405216|sp|Q72GC9|NUOB_THET2 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|90109659|pdb|2FUG|6 Chain 6, Crystal Structure Of The Hydrophilic Domain Of Respiratory
           Complex I From Thermus Thermophilus
 gi|90109667|pdb|2FUG|F Chain F, Crystal Structure Of The Hydrophilic Domain Of Respiratory
           Complex I From Thermus Thermophilus
 gi|90109675|pdb|2FUG|O Chain O, Crystal Structure Of The Hydrophilic Domain Of Respiratory
           Complex I From Thermus Thermophilus
 gi|90109683|pdb|2FUG|X Chain X, Crystal Structure Of The Hydrophilic Domain Of Respiratory
           Complex I From Thermus Thermophilus
 gi|258588593|pdb|3I9V|6 Chain 6, Crystal Structure Of The Hydrophilic Domain Of Respiratory
           Complex I From Thermus Thermophilus, Oxidized, 2 MolASU
 gi|258588601|pdb|3I9V|F Chain F, Crystal Structure Of The Hydrophilic Domain Of Respiratory
           Complex I From Thermus Thermophilus, Oxidized, 2 MolASU
 gi|258588609|pdb|3IAM|6 Chain 6, Crystal Structure Of The Hydrophilic Domain Of Respiratory
           Complex I From Thermus Thermophilus, Reduced, 2 MolASU,
           With Bound Nadh
 gi|258588617|pdb|3IAM|F Chain F, Crystal Structure Of The Hydrophilic Domain Of Respiratory
           Complex I From Thermus Thermophilus, Reduced, 2 MolASU,
           With Bound Nadh
 gi|258588625|pdb|3IAS|6 Chain 6, Crystal Structure Of The Hydrophilic Domain Of Respiratory
           Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
           Re-Refined To 3.15 Angstrom Resolution
 gi|258588633|pdb|3IAS|F Chain F, Crystal Structure Of The Hydrophilic Domain Of Respiratory
           Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
           Re-Refined To 3.15 Angstrom Resolution
 gi|258588641|pdb|3IAS|O Chain O, Crystal Structure Of The Hydrophilic Domain Of Respiratory
           Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
           Re-Refined To 3.15 Angstrom Resolution
 gi|258588649|pdb|3IAS|X Chain X, Crystal Structure Of The Hydrophilic Domain Of Respiratory
           Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
           Re-Refined To 3.15 Angstrom Resolution
 gi|296863609|pdb|3M9S|6 Chain 6, Crystal Structure Of Respiratory Complex I From Thermus
           Thermophilus
 gi|296863622|pdb|3M9S|F Chain F, Crystal Structure Of Respiratory Complex I From Thermus
           Thermophilus
 gi|1279862|gb|AAA97939.1| NADH dehydrogenase I, subunit NQO6 [Thermus thermophilus]
 gi|46197849|gb|AAS82261.1| NADH-quinone oxidoreductase chain B [Thermus thermophilus HB27]
 gi|55771467|dbj|BAD69908.1| NADH-quinone oxidoreductase chain 6 [Thermus thermophilus HB8]
          Length = 181

 Score =  225 bits (575), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 86/154 (55%), Positives = 116/154 (75%), Gaps = 2/154 (1%)

Query: 26  FSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA 85
           F R   E+  +G L T++++LV W R+ SL   TFGLACCA+EMM ++  R DL RFG  
Sbjct: 7   FERDVQELEREGILFTTLEKLVAWGRSNSLWPATFGLACCAIEMMASTDARNDLARFGSE 66

Query: 86  -PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR 144
             RASPRQ+DVMIVAG L+ KMA  +RRV++QMP+P++VISMG+CA+ GG ++  Y++V+
Sbjct: 67  VFRASPRQADVMIVAGRLSKKMAPVMRRVWEQMPDPKWVISMGACASSGGMFNN-YAIVQ 125

Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
             D +VPVD+YVPGCPP  EALIY ++ LQKK+R
Sbjct: 126 NVDSVVPVDVYVPGCPPRPEALIYAVMQLQKKVR 159


>gi|255691139|ref|ZP_05414814.1| NADH dehydrogenase I, B subunit [Bacteroides finegoldii DSM 17565]
 gi|260623232|gb|EEX46103.1| NADH dehydrogenase I, B subunit [Bacteroides finegoldii DSM 17565]
          Length = 200

 Score =  225 bits (575), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 74/160 (46%), Positives = 107/160 (66%), Gaps = 3/160 (1%)

Query: 22  VDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDL 79
            +    ++  E+   G    +  +D  + W R+ SL  +TF  +CC +E M     RYD+
Sbjct: 19  DNESLEKLVKELNAGGANIALGVLDDFINWGRSNSLWPLTFATSCCGIEFMALGAARYDM 78

Query: 80  ERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY 138
            RFGF   RASPRQ+D+++V GT+TNKMA  L+R+YDQMP+P+YVI++G CA  GG +  
Sbjct: 79  ARFGFEVARASPRQADMIMVCGTITNKMAPVLKRLYDQMPDPKYVIAVGGCAVSGGPFKK 138

Query: 139 SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           SY VV G D+I+PVD+Y+PGCPP  EA  YG++ LQ+K++
Sbjct: 139 SYHVVNGVDKILPVDVYIPGCPPRPEAFYYGMMQLQRKVK 178


>gi|330997245|ref|ZP_08321098.1| NADH-quinone oxidoreductase, B subunit [Paraprevotella xylaniphila
           YIT 11841]
 gi|329571040|gb|EGG52747.1| NADH-quinone oxidoreductase, B subunit [Paraprevotella xylaniphila
           YIT 11841]
          Length = 204

 Score =  225 bits (575), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 74/161 (45%), Positives = 109/161 (67%), Gaps = 3/161 (1%)

Query: 21  KVDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78
           K +    R++ ++   G   ++ ++D L+ W R+ SL  +TFG +CCA+E M     RYD
Sbjct: 19  KNNDYLLRMAEKLNRDGAGIVLGTLDDLINWGRSNSLWSLTFGTSCCAIEFMALGAARYD 78

Query: 79  LERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137
           + RFGF   R SPRQ+D+++V GT+T +MA  L+R+YDQM EP+YV+++G C   GG + 
Sbjct: 79  MARFGFEVTRNSPRQADMIMVLGTITYRMAPVLKRLYDQMAEPKYVVAVGGCTISGGPFR 138

Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
            SY VV G D I+PVD+Y+PGCPP  EA  YG++ LQ+KI+
Sbjct: 139 KSYHVVNGIDEIIPVDVYIPGCPPRPEAFFYGMMQLQRKIK 179


>gi|290988400|ref|XP_002676909.1| predicted protein [Naegleria gruberi]
 gi|284090514|gb|EFC44165.1| predicted protein [Naegleria gruberi]
          Length = 186

 Score =  225 bits (575), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 98/142 (69%), Positives = 116/142 (81%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           +L   V  L  WAR  S+  +TFGLACCAVEMM  +  RYDLER+G   R +PRQSD MI
Sbjct: 7   YLKAPVHDLFAWARISSMWPVTFGLACCAVEMMHVAAARYDLERYGIFFRPTPRQSDAMI 66

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           +AGTLTNKMA ALR+V+DQM EPRY +SMGSCANGGGYYH+SY VVRG D+I+PVD+YVP
Sbjct: 67  IAGTLTNKMAPALRKVWDQMAEPRYSVSMGSCANGGGYYHFSYHVVRGADQIIPVDVYVP 126

Query: 158 GCPPTAEALIYGILLLQKKIRR 179
           GCPPTAEAL+YG+ +LQKKI+R
Sbjct: 127 GCPPTAEALLYGVYMLQKKIKR 148


>gi|154795239|ref|YP_001312203.2| NADH dehydrogenase subunit K [Cycas taitungensis]
 gi|218527897|sp|A6H5H8|NDHK_CYCTA RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
          Length = 261

 Score =  225 bits (575), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 71/155 (45%), Positives = 105/155 (67%), Gaps = 1/155 (0%)

Query: 27  SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP 86
           S +  + T    + T+++ L  WAR  SL  + +G +CC +E       R+D +R+G  P
Sbjct: 6   SPLLGQTTPNSVISTTLNDLSNWARLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVP 65

Query: 87  RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRG 145
           R+SPRQ+D++I AGT+T KMA +L R+Y+QMP P+YVI+MG+C   GG +   SYS VRG
Sbjct: 66  RSSPRQADLIITAGTVTMKMAPSLVRLYEQMPGPKYVIAMGACTITGGMFSTDSYSTVRG 125

Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
            D+++PVD+Y+PGCPP  EA+I  I+ L+KK+ R 
Sbjct: 126 VDKLIPVDVYLPGCPPKPEAIIDAIIKLRKKVARE 160


>gi|149941520|dbj|BAF64944.1| NADH dehydrogenase subunit K [Cycas taitungensis]
 gi|156598045|gb|ABU85288.1| NADH-plastoquinone oxidoreductase subunit K [Cycas micronesica]
          Length = 319

 Score =  225 bits (575), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 71/155 (45%), Positives = 105/155 (67%), Gaps = 1/155 (0%)

Query: 27  SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP 86
           S +  + T    + T+++ L  WAR  SL  + +G +CC +E       R+D +R+G  P
Sbjct: 64  SPLLGQTTPNSVISTTLNDLSNWARLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVP 123

Query: 87  RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRG 145
           R+SPRQ+D++I AGT+T KMA +L R+Y+QMP P+YVI+MG+C   GG +   SYS VRG
Sbjct: 124 RSSPRQADLIITAGTVTMKMAPSLVRLYEQMPGPKYVIAMGACTITGGMFSTDSYSTVRG 183

Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
            D+++PVD+Y+PGCPP  EA+I  I+ L+KK+ R 
Sbjct: 184 VDKLIPVDVYLPGCPPKPEAIIDAIIKLRKKVARE 218


>gi|332881564|ref|ZP_08449213.1| NADH-quinone oxidoreductase subunit B [Capnocytophaga sp. oral
           taxon 329 str. F0087]
 gi|332680562|gb|EGJ53510.1| NADH-quinone oxidoreductase subunit B [Capnocytophaga sp. oral
           taxon 329 str. F0087]
          Length = 204

 Score =  225 bits (575), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 75/161 (46%), Positives = 110/161 (68%), Gaps = 3/161 (1%)

Query: 21  KVDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78
           K +    R++ ++   G   ++ ++D L+ W R+ SL  +TFG +CCA+E M     RYD
Sbjct: 19  KNNDYLLRMAEKLNRDGAGIVLGTLDDLINWGRSNSLWSLTFGTSCCAIEFMALGAARYD 78

Query: 79  LERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137
           + RFGF   R SPRQ+D+++V GT+T +MA  L+R+YDQM EP+YV+++G C   GG + 
Sbjct: 79  MARFGFEVTRNSPRQADMIMVLGTITYRMAPVLKRLYDQMAEPKYVVAVGGCTISGGPFR 138

Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
            SY VV G DRI+PVD+Y+PGCPP  EA  YG++ LQ+KI+
Sbjct: 139 RSYHVVNGIDRIIPVDVYIPGCPPRPEAFFYGMMQLQRKIK 179


>gi|218295761|ref|ZP_03496557.1| NADH-quinone oxidoreductase, B subunit [Thermus aquaticus Y51MC23]
 gi|218243920|gb|EED10447.1| NADH-quinone oxidoreductase, B subunit [Thermus aquaticus Y51MC23]
          Length = 181

 Score =  225 bits (575), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 85/154 (55%), Positives = 116/154 (75%), Gaps = 2/154 (1%)

Query: 26  FSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA 85
           F +   E+  +G L T++++LV W R+ SL   TFGLACCA+EMM ++  R DL RFG  
Sbjct: 7   FEKDVQELEREGILFTTLEKLVAWGRSNSLWPATFGLACCAIEMMASTDARNDLARFGSE 66

Query: 86  -PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR 144
             RASPRQ+DVMIVAG L+ KMA  +RRV++QMP+P++VISMG+CA+ GG ++  Y++V+
Sbjct: 67  VFRASPRQADVMIVAGRLSKKMAPVMRRVWEQMPDPKWVISMGACASSGGMFNN-YAIVQ 125

Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
             D +VPVD+YVPGCPP  EALIY ++ LQKK+R
Sbjct: 126 NVDSVVPVDVYVPGCPPRPEALIYAVMQLQKKVR 159


>gi|294674399|ref|YP_003575015.1| proton-translocating NADH-quinone oxidoreductase subunit B
           [Prevotella ruminicola 23]
 gi|294473976|gb|ADE83365.1| putative proton-translocating NADH-quinone oxidoreductase, B
           subunit [Prevotella ruminicola 23]
          Length = 263

 Score =  225 bits (575), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 75/160 (46%), Positives = 110/160 (68%), Gaps = 3/160 (1%)

Query: 22  VDADFSRISSEITHKGF--LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDL 79
            +    +I  E+   G   +  S+DQL+ W R+ SL  +TF  +CC +E M     RYD 
Sbjct: 18  DNESLEKIIDELHEGGVNVVTGSLDQLINWGRSNSLWSLTFATSCCGIEFMACGCSRYDF 77

Query: 80  ERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY 138
            RFGF   R SPRQ+D+++ AGT+T+KMA AL+R+YDQM EP+YV+++G CA  GG +  
Sbjct: 78  ARFGFEVTRNSPRQADLIMCAGTITHKMAPALKRLYDQMAEPKYVVAVGGCAISGGPFKS 137

Query: 139 SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           SY VV+G + IVPVD+++PGCPP  EA++YG++ LQ+K++
Sbjct: 138 SYHVVKGIEEIVPVDVFIPGCPPRPEAIMYGMMQLQRKVK 177


>gi|11466706|ref|NP_039302.1| NADH dehydrogenase subunit K [Marchantia polymorpha]
 gi|131322|sp|P06410|NDHK_MARPO RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
 gi|11676|emb|CAA28088.1| psbG [Marchantia polymorpha]
          Length = 243

 Score =  225 bits (575), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 74/168 (44%), Positives = 113/168 (67%), Gaps = 2/168 (1%)

Query: 14  QSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQAS 73
            +S ++ K   + S I+  +T+   ++T+ +    WAR  SL  + +G +CC +E     
Sbjct: 16  DNSTTMLKNSIESSFINKTLTN-SIILTTFNDFSNWARLSSLWPLLYGTSCCFIEFASLI 74

Query: 74  MPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGG 133
             R+D +R+G  PR+SPRQ+D++I AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   G
Sbjct: 75  GSRFDFDRYGLVPRSSPRQADLIITAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITG 134

Query: 134 GYYH-YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           G +   SY+ VRG D+++PVDIY+PGCPP  EA+I  I+ L+KKI + 
Sbjct: 135 GMFSTDSYTTVRGVDKLIPVDIYLPGCPPKPEAIIDAIIKLRKKIAQE 182


>gi|238065078|sp|Q11XR8|NUOB1_CYTH3 RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName:
           Full=NADH dehydrogenase I subunit B 1; AltName:
           Full=NDH-1 subunit B 1
          Length = 178

 Score =  225 bits (575), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 96/156 (61%), Positives = 115/156 (73%), Gaps = 1/156 (0%)

Query: 26  FSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA 85
            S +  +    G +V+ ++ ++ WAR  SL  M+FGLACCA+EMMQ     YDL+RFG  
Sbjct: 1   MSLLDHKFGQGGIVVSQLEDVLNWARLSSLFPMSFGLACCAIEMMQTFTSGYDLDRFGVI 60

Query: 86  PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVR 144
           PR SPRQSDVMIVAGT+T KMA  +RR+Y+QMPEPRYVISMGSC+N GG Y    Y VV+
Sbjct: 61  PRPSPRQSDVMIVAGTVTFKMADRIRRLYEQMPEPRYVISMGSCSNCGGPYWEHGYHVVK 120

Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           G DRIVPVDIYVPGCPP  EALI G L LQ+KIR+ 
Sbjct: 121 GVDRIVPVDIYVPGCPPRPEALIGGFLKLQEKIRKE 156


>gi|108796798|ref|YP_636385.1| NADH dehydrogenase subunit K [Staurastrum punctulatum]
 gi|122211808|sp|Q32RZ1|NDHK_STAPU RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
 gi|61393566|gb|AAX45707.1| 27 kDa subunit of NADH-ubiquinone oxidoreductase [Staurastrum
           punctulatum]
          Length = 280

 Score =  225 bits (574), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 71/180 (39%), Positives = 112/180 (62%), Gaps = 5/180 (2%)

Query: 6   VNQKIISGQSSCSLEKVDADFS----RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFG 61
           +N ++    +S   E  ++  +     I+ E      ++T+      W R  SL  + +G
Sbjct: 3   INSELFRSSNSFQEEGFESVTNGLSFSITEENISDSVILTTFHDFTNWIRLSSLWPLLYG 62

Query: 62  LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPR 121
            +CC +E       R+D +R+G  PR+SPRQ+D++I AGT+T KMA +L R+Y+QMPEP+
Sbjct: 63  TSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLIITAGTVTMKMAPSLVRLYEQMPEPK 122

Query: 122 YVISMGSCANGGGYYH-YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           YVI+MG+C   GG +   SYS VRG D+++PVD+Y+PGCPP  EA+I  ++ L+KK+ + 
Sbjct: 123 YVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEAIIDAVIKLRKKVGQE 182


>gi|297565713|ref|YP_003684685.1| NADH-quinone oxidoreductase subunit B [Meiothermus silvanus DSM
           9946]
 gi|296850162|gb|ADH63177.1| NADH-quinone oxidoreductase, B subunit [Meiothermus silvanus DSM
           9946]
          Length = 179

 Score =  225 bits (574), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 87/154 (56%), Positives = 118/154 (76%), Gaps = 2/154 (1%)

Query: 26  FSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA 85
           FS+   E+ ++G L T++++LV W R+ SL   TFGLACCA+EMM ++  R DL RFG  
Sbjct: 8   FSKDVQELENEGVLFTTLEKLVAWGRSNSLWPATFGLACCAIEMMASTDARNDLARFGSE 67

Query: 86  -PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR 144
             RASPRQ+DVMIVAG L+ KMA  +RRVYDQMP+P++VISMG+CA+ GG ++  Y++V+
Sbjct: 68  VFRASPRQADVMIVAGRLSKKMAPVMRRVYDQMPDPKWVISMGACASSGGMFNN-YAIVQ 126

Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
             D +VPVD+YVPGCPP  EALIY ++ LQKK++
Sbjct: 127 NVDSVVPVDVYVPGCPPRPEALIYAVMQLQKKVQ 160


>gi|160886847|ref|ZP_02067850.1| hypothetical protein BACOVA_04861 [Bacteroides ovatus ATCC 8483]
 gi|260171803|ref|ZP_05758215.1| NADH dehydrogenase I, chain B [Bacteroides sp. D2]
 gi|299148405|ref|ZP_07041467.1| proton-translocating NADH-quinone oxidoreductase, B subunit
           [Bacteroides sp. 3_1_23]
 gi|315920115|ref|ZP_07916355.1| NADH-quinone oxidoreductase [Bacteroides sp. D2]
 gi|156107258|gb|EDO09003.1| hypothetical protein BACOVA_04861 [Bacteroides ovatus ATCC 8483]
 gi|298513166|gb|EFI37053.1| proton-translocating NADH-quinone oxidoreductase, B subunit
           [Bacteroides sp. 3_1_23]
 gi|313693990|gb|EFS30825.1| NADH-quinone oxidoreductase [Bacteroides sp. D2]
          Length = 200

 Score =  225 bits (574), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 73/160 (45%), Positives = 107/160 (66%), Gaps = 3/160 (1%)

Query: 22  VDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDL 79
            +    ++  E+   G    +  +D  + W R+ SL  +TF  +CC +E M     RYD+
Sbjct: 19  DNESLEKLVKELNAGGANVALGVLDDFINWGRSNSLWPLTFATSCCGIEFMALGAARYDM 78

Query: 80  ERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY 138
            RFGF   RASPRQ+D+++V GT+TNKMA  L+R+YDQMP+P+YV+++G CA  GG +  
Sbjct: 79  ARFGFEVARASPRQADMIMVCGTITNKMAPVLKRLYDQMPDPKYVVAVGGCAVSGGPFKK 138

Query: 139 SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           SY VV G D+I+PVD+Y+PGCPP  EA  YG++ LQ+K++
Sbjct: 139 SYHVVNGVDKILPVDVYIPGCPPRPEAFYYGMMQLQRKVK 178


>gi|282860263|ref|ZP_06269333.1| NADH-quinone oxidoreductase, B subunit [Prevotella bivia
           JCVIHMP010]
 gi|282586937|gb|EFB92172.1| NADH-quinone oxidoreductase, B subunit [Prevotella bivia
           JCVIHMP010]
          Length = 301

 Score =  225 bits (574), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 76/161 (47%), Positives = 114/161 (70%), Gaps = 3/161 (1%)

Query: 21  KVDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78
           K +    +++S++   G   ++ ++DQL+ W R+ SL  +TF  +CC +E M     RYD
Sbjct: 17  KDNDTLDKMASDLNDGGTSLVLGNLDQLINWGRSNSLWSLTFATSCCGIEFMSVGCARYD 76

Query: 79  LERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137
             RFGF   R SPRQ+D+++ AGT+TNKMA AL+R+YD+M EP+YVI++G CA  GG + 
Sbjct: 77  FSRFGFEVTRNSPRQADLIMCAGTITNKMAPALKRLYDEMAEPKYVIAVGGCAISGGPFK 136

Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
            SY V+RG D I+PVD+++PGCPP  EA+IYG++ LQ+K++
Sbjct: 137 NSYHVMRGIDEIIPVDVFIPGCPPRPEAIIYGMMQLQRKVK 177


>gi|189500538|ref|YP_001960008.1| NADH dehydrogenase subunit B [Chlorobium phaeobacteroides BS1]
 gi|238055285|sp|B3EKA0|NUOB_CHLPB RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|189495979|gb|ACE04527.1| NADH-quinone oxidoreductase, B subunit [Chlorobium phaeobacteroides
           BS1]
          Length = 190

 Score =  225 bits (574), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 91/151 (60%), Positives = 117/151 (77%), Gaps = 1/151 (0%)

Query: 29  ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88
           + ++I++   LVTSVD ++ WAR  SL  M FGLACCA+EMM  +   YDLERFG  PR+
Sbjct: 4   LDAKISNHNVLVTSVDNVLNWARLSSLWPMGFGLACCAIEMMATNASNYDLERFGIFPRS 63

Query: 89  SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGCD 147
           SPRQSD+MIVAGT+T KMA  + R+Y+QMPEPRYV+SMGSC+N GG Y  + Y V++G D
Sbjct: 64  SPRQSDLMIVAGTVTMKMAERVIRLYEQMPEPRYVLSMGSCSNCGGPYWKHGYHVLKGVD 123

Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           RI+PVD+YVPGCPP  EALI G++ +Q+ IR
Sbjct: 124 RIIPVDVYVPGCPPRPEALIGGLMKVQELIR 154


>gi|237719852|ref|ZP_04550333.1| NADH dehydrogenase subunit I B [Bacteroides sp. 2_2_4]
 gi|262408339|ref|ZP_06084886.1| NADH-quinone oxidoreductase subunit C/D [Bacteroides sp. 2_1_22]
 gi|293373614|ref|ZP_06619962.1| NADH-quinone oxidoreductase, B subunit [Bacteroides ovatus SD CMC
           3f]
 gi|294809425|ref|ZP_06768130.1| NADH-quinone oxidoreductase, B subunit [Bacteroides xylanisolvens
           SD CC 1b]
 gi|298480351|ref|ZP_06998549.1| proton-translocating NADH-quinone oxidoreductase, B subunit
           [Bacteroides sp. D22]
 gi|229451121|gb|EEO56912.1| NADH dehydrogenase subunit I B [Bacteroides sp. 2_2_4]
 gi|262353891|gb|EEZ02984.1| NADH-quinone oxidoreductase subunit C/D [Bacteroides sp. 2_1_22]
 gi|292631439|gb|EFF50069.1| NADH-quinone oxidoreductase, B subunit [Bacteroides ovatus SD CMC
           3f]
 gi|294443361|gb|EFG12123.1| NADH-quinone oxidoreductase, B subunit [Bacteroides xylanisolvens
           SD CC 1b]
 gi|298273632|gb|EFI15195.1| proton-translocating NADH-quinone oxidoreductase, B subunit
           [Bacteroides sp. D22]
          Length = 200

 Score =  225 bits (574), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 73/160 (45%), Positives = 107/160 (66%), Gaps = 3/160 (1%)

Query: 22  VDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDL 79
            +    ++  E+   G    +  +D  + W R+ SL  +TF  +CC +E M     RYD+
Sbjct: 19  DNESLEKLVKELNAGGANVALGVLDDFINWGRSNSLWPLTFATSCCGIEFMALGAARYDM 78

Query: 80  ERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY 138
            RFGF   RASPRQ+D+++V GT+TNKMA  L+R+YDQMP+P+YV+++G CA  GG +  
Sbjct: 79  ARFGFEVARASPRQADMIMVCGTITNKMAPVLKRLYDQMPDPKYVVAVGGCAVSGGPFKK 138

Query: 139 SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           SY VV G D+I+PVD+Y+PGCPP  EA  YG++ LQ+K++
Sbjct: 139 SYHVVNGVDKILPVDVYIPGCPPRPEAFYYGMMQLQRKVK 178


>gi|291296255|ref|YP_003507653.1| NADH-quinone oxidoreductase B subunit [Meiothermus ruber DSM 1279]
 gi|290471214|gb|ADD28633.1| NADH-quinone oxidoreductase, B subunit [Meiothermus ruber DSM 1279]
          Length = 179

 Score =  225 bits (574), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 85/154 (55%), Positives = 118/154 (76%), Gaps = 2/154 (1%)

Query: 26  FSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA 85
           F++   E+ ++G L T++++L+ W R+ SL   TFGLACCA+EMM ++  R DL RFG  
Sbjct: 8   FTKDVQELENEGVLFTTLEKLIAWGRSNSLWPATFGLACCAIEMMASTDARNDLSRFGSE 67

Query: 86  -PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR 144
             RASPRQ+DVMIVAG L+ KMA  +RRVYDQMP+P++VISMG+CA+ GG ++  Y++V+
Sbjct: 68  VFRASPRQADVMIVAGRLSKKMAPVMRRVYDQMPDPKWVISMGACASSGGMFNN-YAIVQ 126

Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
             D +VPVD++VPGCPP  EALIY ++ LQKKI+
Sbjct: 127 NVDSVVPVDVFVPGCPPRPEALIYAVMQLQKKIQ 160


>gi|145219899|ref|YP_001130608.1| NADH-quinone oxidoreductase, B subunit [Prosthecochloris
           vibrioformis DSM 265]
 gi|238065192|sp|A4SF47|NUOB_PROVI RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|145206063|gb|ABP37106.1| NADH dehydrogenase subunit B [Chlorobium phaeovibrioides DSM 265]
          Length = 189

 Score =  225 bits (574), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 90/154 (58%), Positives = 116/154 (75%), Gaps = 1/154 (0%)

Query: 29  ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88
           + + ++ +  LVTSVD ++ WAR  SL  M FGLACCA+EMM  +   YDLERFG  PR+
Sbjct: 4   LDAAVSRQNVLVTSVDSVLNWARLSSLWPMGFGLACCAIEMMATNASNYDLERFGIFPRS 63

Query: 89  SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCD 147
           SPRQSD+MIVAGT+T KMA  + R+Y+QMPEPRYV+SMGSC+N GG Y    Y V++G D
Sbjct: 64  SPRQSDLMIVAGTVTMKMAERVVRLYEQMPEPRYVLSMGSCSNCGGPYWEHGYHVLKGVD 123

Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
           R++PVD+YVPGCPP  EALI G++ +Q+ IR  G
Sbjct: 124 RVIPVDVYVPGCPPRPEALIGGLMKIQELIRMEG 157


>gi|33860851|ref|NP_892412.1| NADH dehydrogenase subunit B [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
 gi|81576412|sp|Q7V303|NDHK_PROMP RecName: Full=NAD(P)H-quinone oxidoreductase subunit K; AltName:
           Full=NAD(P)H dehydrogenase I subunit K; AltName:
           Full=NDH-1 subunit K; Short=NDH-K
 gi|33633793|emb|CAE18752.1| putative respiratory-chain NADH dehydrogenase subunit
           [Prochlorococcus marinus subsp. pastoris str. CCMP1986]
          Length = 244

 Score =  225 bits (574), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 71/152 (46%), Positives = 104/152 (68%), Gaps = 1/152 (0%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
             +  ++TS+D L  WAR  SL  + +G ACC +E       R+D +RFG  PR+SPRQ+
Sbjct: 30  LSENIIMTSLDDLHNWARLSSLWPLLYGTACCFIEFAALIGSRFDFDRFGLVPRSSPRQA 89

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGCDRIVPV 152
           D++IVAGT+T KMA AL R+Y+QMPEP+YVI+MG+C   GG +   S + VRG D+++PV
Sbjct: 90  DLLIVAGTVTMKMAPALVRLYEQMPEPKYVIAMGACTITGGMFSADSTTAVRGVDKLIPV 149

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           D+Y+PGCPP  EA+   ++ L+KK+     ++
Sbjct: 150 DLYLPGCPPRPEAIFDAVIKLRKKVANESILE 181


>gi|299140925|ref|ZP_07034063.1| proton-translocating NADH-quinone oxidoreductase, B subunit
           [Prevotella oris C735]
 gi|298577891|gb|EFI49759.1| proton-translocating NADH-quinone oxidoreductase, B subunit
           [Prevotella oris C735]
          Length = 247

 Score =  225 bits (574), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 75/161 (46%), Positives = 111/161 (68%), Gaps = 3/161 (1%)

Query: 21  KVDADFSRISSEITHKGF--LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78
           K +    +I+ E+   G   +V S+DQ + W R+ SL  +TFG +CC +E M     RYD
Sbjct: 24  KDNDSLEKITQELNEGGVNVIVGSLDQAINWGRSNSLWSLTFGTSCCGIEFMAVGCARYD 83

Query: 79  LERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137
             RFGF   R SPRQ+D+++ AGT+TNKMA   +R+YD++ EP+YV+++G C   GG + 
Sbjct: 84  FSRFGFEVTRNSPRQADLIMCAGTITNKMAPVFKRLYDEIAEPKYVVAVGGCTISGGPFK 143

Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
            SY+VVRG D +VPVD+Y+PGCPP  EA++YG++ LQ+K++
Sbjct: 144 KSYNVVRGIDELVPVDVYIPGCPPRPEAILYGMMQLQRKVK 184


>gi|298384973|ref|ZP_06994532.1| proton-translocating NADH-quinone oxidoreductase, B subunit
           [Bacteroides sp. 1_1_14]
 gi|298262117|gb|EFI04982.1| proton-translocating NADH-quinone oxidoreductase, B subunit
           [Bacteroides sp. 1_1_14]
          Length = 197

 Score =  225 bits (574), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 74/160 (46%), Positives = 108/160 (67%), Gaps = 3/160 (1%)

Query: 22  VDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDL 79
            +    ++  E+   G    +  +D LV W R+ SL  +TF  +CC +E M     RYD+
Sbjct: 19  DNESLEKLVKELNAGGANVFLGVLDDLVNWGRSNSLWPLTFATSCCGIEFMALGAARYDM 78

Query: 80  ERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY 138
            RFGF   RASPRQ+D+++V GT+TNKMA  L+R+YDQMP+P+YV+++G CA  GG +  
Sbjct: 79  ARFGFEVARASPRQADMIMVCGTITNKMAPVLKRLYDQMPDPKYVVAVGGCAVSGGPFKK 138

Query: 139 SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           SY V+ G D+I+PVD+Y+PGCPP  EA  YG++ LQ+K++
Sbjct: 139 SYHVLNGVDKILPVDVYIPGCPPRPEAFYYGMMQLQRKVK 178


>gi|320449689|ref|YP_004201785.1| NADH-quinone oxidoreductase subunit B [Thermus scotoductus SA-01]
 gi|320149858|gb|ADW21236.1| NADH-quinone oxidoreductase, subunit B [Thermus scotoductus SA-01]
          Length = 181

 Score =  225 bits (574), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 86/154 (55%), Positives = 116/154 (75%), Gaps = 2/154 (1%)

Query: 26  FSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA 85
           F R   E+  +G L T++++LV W R+ SL   TFGLACCA+EMM ++  R DL RFG  
Sbjct: 7   FERDVQELEREGILFTTLEKLVAWGRSNSLWPATFGLACCAIEMMASTDARNDLARFGSE 66

Query: 86  -PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR 144
             RASPRQ+DVMIVAG L+ KMA  +RRV++QMP+P++VISMG+CA+ GG ++  Y++V+
Sbjct: 67  VFRASPRQADVMIVAGRLSKKMAPVMRRVWEQMPDPKWVISMGACASSGGMFNN-YAIVQ 125

Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
             D +VPVD+YVPGCPP  EALIY ++ LQKK+R
Sbjct: 126 NVDSVVPVDVYVPGCPPRPEALIYAVMQLQKKVR 159


>gi|121597251|ref|YP_990264.1| NADH-quinone oxidoreductase, B subunit [Burkholderia mallei SAVP1]
 gi|254355774|ref|ZP_04972053.1| NADH-quinone oxidoreductase, B subunit [Burkholderia mallei
           2002721280]
 gi|121225049|gb|ABM48580.1| NADH-quinone oxidoreductase, B subunit [Burkholderia mallei SAVP1]
 gi|148024745|gb|EDK82928.1| NADH-quinone oxidoreductase, B subunit [Burkholderia mallei
           2002721280]
          Length = 293

 Score =  225 bits (574), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 107/151 (70%), Positives = 126/151 (83%)

Query: 32  EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPR 91
            +   GF+VT++D  +  A+  SL +MTFGLACCAVEMM A+  RYD++RFG  PRASPR
Sbjct: 133 TLEKDGFIVTTLDAAMAAAQKNSLWYMTFGLACCAVEMMHAAGARYDMDRFGMIPRASPR 192

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
           Q D+MIVAGTLTNKMA A+RRVYDQM EPRYV+SMGSCANGGGYYHYSYSVVRGCDRIVP
Sbjct: 193 QCDLMIVAGTLTNKMAPAMRRVYDQMAEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVP 252

Query: 152 VDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
           VD+YVPGCPPTAEAL+YG++ LQ+K+     
Sbjct: 253 VDVYVPGCPPTAEALVYGLMQLQRKVAERST 283


>gi|75908080|ref|YP_322376.1| NADH dehydrogenase subunit B [Anabaena variabilis ATCC 29413]
 gi|6685694|sp|Q9XBL7|NDHK_ANAVT RecName: Full=NAD(P)H-quinone oxidoreductase subunit K; AltName:
           Full=NAD(P)H dehydrogenase I subunit K; AltName:
           Full=NDH-1 subunit K; Short=NDH-K
 gi|5139342|emb|CAB45647.1| NDH-K protein [Anabaena variabilis]
 gi|75701805|gb|ABA21481.1| NADH dehydrogenase subunit B [Anabaena variabilis ATCC 29413]
          Length = 245

 Score =  225 bits (574), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 74/173 (42%), Positives = 110/173 (63%), Gaps = 4/173 (2%)

Query: 6   VNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACC 65
           +N  + +      +  ++       ++   +  ++T+VD L  WAR  SL  + FG ACC
Sbjct: 3   LNSDLTTQDKERIINPIERP---TVTQDLSENVILTTVDDLYNWARLSSLWPLLFGTACC 59

Query: 66  AVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVIS 125
            +E       R+D +RFG  PR+SPRQ+D++I AGT+T KMA  L R+Y+QMPEP+YVI+
Sbjct: 60  FIEFAALIGSRFDFDRFGLIPRSSPRQADLIITAGTITMKMAPQLVRLYEQMPEPKYVIA 119

Query: 126 MGSCANGGGYYH-YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
           MG+C   GG +   S + VRG D+++PVD+Y+PGCPP  EA+I  I+ L+KKI
Sbjct: 120 MGACTITGGMFSVDSPTAVRGVDKLIPVDVYLPGCPPRPEAIIDAIIKLRKKI 172


>gi|29349474|ref|NP_812977.1| NADH dehydrogenase subunit B [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|81586646|sp|Q8A0F5|NUOB_BACTN RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|29341383|gb|AAO79171.1| NADH dehydrogenase I, chain B [Bacteroides thetaiotaomicron
           VPI-5482]
          Length = 197

 Score =  225 bits (574), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 74/160 (46%), Positives = 108/160 (67%), Gaps = 3/160 (1%)

Query: 22  VDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDL 79
            +    ++  E+   G    +  +D LV W R+ SL  +TF  +CC +E M     RYD+
Sbjct: 19  DNESLEKLVKELNTGGANVFLGVLDDLVNWGRSNSLWPLTFATSCCGIEFMALGAARYDM 78

Query: 80  ERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY 138
            RFGF   RASPRQ+D+++V GT+TNKMA  L+R+YDQMP+P+YV+++G CA  GG +  
Sbjct: 79  ARFGFEVARASPRQADMIMVCGTITNKMAPVLKRLYDQMPDPKYVVAVGGCAVSGGPFKK 138

Query: 139 SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           SY V+ G D+I+PVD+Y+PGCPP  EA  YG++ LQ+K++
Sbjct: 139 SYHVLNGVDKILPVDVYIPGCPPRPEAFYYGMMQLQRKVK 178


>gi|255036234|ref|YP_003086855.1| NADH-quinone oxidoreductase, B subunit [Dyadobacter fermentans DSM
           18053]
 gi|254948990|gb|ACT93690.1| NADH-quinone oxidoreductase, B subunit [Dyadobacter fermentans DSM
           18053]
          Length = 176

 Score =  225 bits (574), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 93/149 (62%), Positives = 111/149 (74%), Gaps = 1/149 (0%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP 90
           ++    G ++T+ + L+ WAR  SL  M FGLACCA+EMM      YDLERFG  PR SP
Sbjct: 5   TKTGDGGIILTNAEDLMNWARLSSLWPMGFGLACCAIEMMATYAANYDLERFGIMPRPSP 64

Query: 91  RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRI 149
           RQSDVMIVAGT+T KMA  +RR+Y+QMPEPRYVISMGSC+N GG Y    Y VV+G DRI
Sbjct: 65  RQSDVMIVAGTVTFKMADRIRRLYEQMPEPRYVISMGSCSNCGGPYWEHGYHVVKGVDRI 124

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           +PVD+YVPGCPP  EALI G + LQ+KIR
Sbjct: 125 IPVDVYVPGCPPRPEALIGGFMKLQEKIR 153


>gi|22711920|ref|NP_683807.1| NADH dehydrogenase subunit K [Chaetosphaeridium globosum]
 gi|75272587|sp|Q8M9X9|NDHK_CHAGL RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
 gi|22416924|gb|AAM96524.1| subunit K of NADH-ubiquinone oxidoreductase [Chaetosphaeridium
           globosum]
          Length = 242

 Score =  225 bits (574), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 69/151 (45%), Positives = 103/151 (68%), Gaps = 1/151 (0%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP 90
            E      ++T+++    WAR  SL  + +G +CC +E       R+D +R+G  PR+SP
Sbjct: 31  KEELSNSIILTTLNDFSNWARLSSLWPLLYGTSCCFIEFAALIGSRFDFDRYGLVPRSSP 90

Query: 91  RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGCDRI 149
           RQ+D++I AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D++
Sbjct: 91  RQADLIITAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKL 150

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           +PVDIY+PGCPP  EA+I  ++ L+KK+ + 
Sbjct: 151 IPVDIYLPGCPPKPEAIIDAVIKLRKKVGQE 181


>gi|159026401|emb|CAO88930.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 247

 Score =  225 bits (573), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 78/175 (44%), Positives = 119/175 (68%), Gaps = 4/175 (2%)

Query: 4   TTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLA 63
           T+  ++II  QS   L  ++   ++++ +++    ++T+VD L  WAR  SL  M +G A
Sbjct: 6   TSEFKQIIEQQSEKILNPIER--TKVTQDLSE-NVILTTVDDLYNWARLSSLWPMLYGTA 62

Query: 64  CCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYV 123
           CC +E       R+D +RFG  PR+SPRQ+D++I AGT+T KMA AL R+Y++MPEP+YV
Sbjct: 63  CCFIEFAALIGSRFDFDRFGLVPRSSPRQADLIITAGTVTMKMAPALVRLYEEMPEPKYV 122

Query: 124 ISMGSCANGGGYY-HYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
           I+MG+C   GG +   S + VRG D+++PVD+Y+PGCPP  EA+I  I+ L+KK+
Sbjct: 123 IAMGACTITGGMFSSDSTTAVRGVDKLIPVDVYIPGCPPRPEAIIDAIIKLRKKV 177


>gi|323345257|ref|ZP_08085480.1| NADH-quinone oxidoreductase subunit B [Prevotella oralis ATCC
           33269]
 gi|323093371|gb|EFZ35949.1| NADH-quinone oxidoreductase subunit B [Prevotella oralis ATCC
           33269]
          Length = 242

 Score =  225 bits (573), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 77/161 (47%), Positives = 111/161 (68%), Gaps = 3/161 (1%)

Query: 21  KVDADFSRISSEITHKGF--LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78
           K ++   +I  E+   G   +  S+DQ++ W R+ SL  +TF  +CC +E M     RYD
Sbjct: 17  KDNSSLEQIVDELHEGGVNVVTGSLDQMINWGRSNSLWSLTFATSCCGIEFMAVGCARYD 76

Query: 79  LERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137
             RFGF   R SPRQ+D+++ AGT+TNKMA A +R+YD+M EP+YVI++G CA  GG + 
Sbjct: 77  FARFGFEVTRNSPRQADLIMCAGTITNKMAPAFKRLYDEMAEPKYVIAVGGCAISGGPFK 136

Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
            SY VVRG D IVPVD+++PGCPP  EA++YG++ LQ+K++
Sbjct: 137 SSYHVVRGIDEIVPVDVFIPGCPPRPEAIMYGMMQLQRKVK 177


>gi|302035990|ref|YP_003796312.1| NADH-quinone oxidoreductase subunit B [Candidatus Nitrospira
           defluvii]
 gi|300604054|emb|CBK40386.1| NADH-quinone oxidoreductase, subunit B [Candidatus Nitrospira
           defluvii]
          Length = 159

 Score =  225 bits (573), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 89/152 (58%), Positives = 112/152 (73%), Gaps = 2/152 (1%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APRAS 89
                   L T++D  V WAR  SL  MTFGLACCA+EM+ +   RYD++RFG    RAS
Sbjct: 5   ERQLDANILTTNLDAFVGWARKSSLWPMTFGLACCAIEMIASVSSRYDIDRFGAGVFRAS 64

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQSD+MIVAGT++ KMA  +RR+YDQM EPRYVISMGSCA  G +Y+ SY+VV+G D+I
Sbjct: 65  PRQSDLMIVAGTVSRKMAPVIRRIYDQMAEPRYVISMGSCATSGNHYN-SYAVVQGVDQI 123

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
           VPVD+Y+ GCPP  EAL+ G+L LQ+KI+R  
Sbjct: 124 VPVDVYIAGCPPRPEALLDGLLKLQEKIQREK 155


>gi|124382496|ref|YP_001024763.1| NADH-quinone oxidoreductase, B subunit [Burkholderia mallei NCTC
           10229]
 gi|126447059|ref|YP_001079101.1| NADH-quinone oxidoreductase, B subunit [Burkholderia mallei NCTC
           10247]
 gi|124290516|gb|ABM99785.1| NADH-quinone oxidoreductase, B subunit [Burkholderia mallei NCTC
           10229]
 gi|126239913|gb|ABO03025.1| NADH-quinone oxidoreductase, B subunit [Burkholderia mallei NCTC
           10247]
          Length = 322

 Score =  225 bits (573), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 107/151 (70%), Positives = 126/151 (83%)

Query: 32  EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPR 91
            +   GF+VT++D  +  A+  SL +MTFGLACCAVEMM A+  RYD++RFG  PRASPR
Sbjct: 162 TLEKDGFIVTTLDAAMAAAQKNSLWYMTFGLACCAVEMMHAAGARYDMDRFGMIPRASPR 221

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
           Q D+MIVAGTLTNKMA A+RRVYDQM EPRYV+SMGSCANGGGYYHYSYSVVRGCDRIVP
Sbjct: 222 QCDLMIVAGTLTNKMAPAMRRVYDQMAEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVP 281

Query: 152 VDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
           VD+YVPGCPPTAEAL+YG++ LQ+K+     
Sbjct: 282 VDVYVPGCPPTAEALVYGLMQLQRKVAERST 312


>gi|315453251|ref|YP_004073521.1| NADH-quinone oxidoreductase subunit B [Helicobacter felis ATCC
           49179]
 gi|315132303|emb|CBY82931.1| NADH-quinone oxidoreductase subunit B [Helicobacter felis ATCC
           49179]
          Length = 169

 Score =  225 bits (573), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 83/146 (56%), Positives = 110/146 (75%), Gaps = 1/146 (0%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
             +T++D+L+ W R+ SL  +T+GLACCA+EMM     R+D +RFG   RASPRQSDVMI
Sbjct: 16  IALTTLDKLLNWGRSNSLWPLTYGLACCAIEMMATGGSRFDFDRFGTIFRASPRQSDVMI 75

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           +AGTLT K A   RR+YDQMPEP++VISMGSCAN GG ++ +Y+ V+G DR++PVDIY+P
Sbjct: 76  IAGTLTKKHAEFTRRLYDQMPEPKWVISMGSCANTGGMFN-TYATVQGVDRVIPVDIYLP 134

Query: 158 GCPPTAEALIYGILLLQKKIRRVGNV 183
           GC P  E L Y +++LQ KIRR   +
Sbjct: 135 GCAPRPETLQYALMVLQDKIRRQKAL 160


>gi|261879876|ref|ZP_06006303.1| NADH dehydrogenase I subunit B [Prevotella bergensis DSM 17361]
 gi|270333469|gb|EFA44255.1| NADH dehydrogenase I subunit B [Prevotella bergensis DSM 17361]
          Length = 262

 Score =  225 bits (573), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 76/176 (43%), Positives = 113/176 (64%), Gaps = 3/176 (1%)

Query: 6   VNQKIISGQSSCSLEKVDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLA 63
           VN++           K +    RI+ E+   G   ++ S+D  + W R+ S   +TFG +
Sbjct: 3   VNKRAKIKSIPYGEFKDNDTLERIAKELNDGGANVVLGSLDAAINWGRSNSPWSLTFGTS 62

Query: 64  CCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122
           CC +E M     RYD+ RFG+   R SPRQ+D+++ AGT+TNKMA   +R+YD+M EP+Y
Sbjct: 63  CCGIEFMAIGCSRYDMARFGWEVTRNSPRQADLIMCAGTITNKMAPVFKRLYDEMAEPKY 122

Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           V+++G C   GG +  SY+VVRG   +VPVD+Y+PGCPP  E+LIYG++ LQ+KI+
Sbjct: 123 VVAVGGCTISGGPFKKSYNVVRGISELVPVDVYIPGCPPRPESLIYGMMQLQRKIK 178


>gi|119897120|ref|YP_932333.1| NADH-quinone oxidoreductase subunit B [Azoarcus sp. BH72]
 gi|218527969|sp|A1K3P1|NUOB2_AZOSB RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName:
           Full=NADH dehydrogenase I subunit B 2; AltName:
           Full=NDH-1 subunit B 2
 gi|119669533|emb|CAL93446.1| conserved hypothetical NADH-quinone oxidoreductase chain B
           [Azoarcus sp. BH72]
          Length = 159

 Score =  225 bits (573), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 104/150 (69%), Positives = 128/150 (85%)

Query: 30  SSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS 89
           +  +   GFL+T +D L    R+ S+ ++TFGLACCAVEMMQA+  RYD++RFG  PRAS
Sbjct: 3   TPTLHGDGFLLTRLDTLCDMVRSNSMWYLTFGLACCAVEMMQAAASRYDMDRFGMIPRAS 62

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQ+D++IVAGTLTNKMA A+R++YDQM EPRYVISMGSCANGGGYYHYSYSV RGCDRI
Sbjct: 63  PRQADLIIVAGTLTNKMAPAIRKIYDQMAEPRYVISMGSCANGGGYYHYSYSVARGCDRI 122

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           +PVDIY+PGCPPTAEAL+YG++ LQ K++R
Sbjct: 123 LPVDIYIPGCPPTAEALLYGLIQLQNKLKR 152


>gi|332885916|gb|EGK06160.1| NADH-quinone oxidoreductase subunit B [Dysgonomonas mossii DSM
           22836]
          Length = 194

 Score =  225 bits (573), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 78/161 (48%), Positives = 107/161 (66%), Gaps = 3/161 (1%)

Query: 21  KVDADFSRISSEITHKGF--LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78
           + +        E+   G   +V  +D L+ W R+ S+  + F  +CC +E M ++  RYD
Sbjct: 17  RDNEYLEDYVKELNEGGVPVIVGKLDDLINWGRSNSVWPLAFATSCCGIEFMASAAARYD 76

Query: 79  LERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137
           L RFG    R SPRQ+D M+VAGT+ +KMA  L+RVYDQM EP+YV++MGSCA  GG + 
Sbjct: 77  LARFGMEVTRNSPRQADTMVVAGTIVHKMAPLLKRVYDQMAEPKYVVAMGSCAISGGPFV 136

Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
            SY VV+G D I+PVD+YVPGCPP  EAL YG++ LQ+KI+
Sbjct: 137 DSYHVVKGIDEIIPVDVYVPGCPPRPEALFYGLMQLQRKIK 177


>gi|121534363|ref|ZP_01666187.1| NADH-quinone oxidoreductase, B subunit [Thermosinus carboxydivorans
           Nor1]
 gi|121307133|gb|EAX48051.1| NADH-quinone oxidoreductase, B subunit [Thermosinus carboxydivorans
           Nor1]
          Length = 173

 Score =  225 bits (573), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 88/155 (56%), Positives = 119/155 (76%), Gaps = 1/155 (0%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89
            E+  K  ++T+V+ +++WAR  SL  +T GLACCA+EMM A+  R+DL RFG+   R S
Sbjct: 13  QELLAKNIILTTVETVLSWARGNSLWPLTSGLACCAIEMMCAASGRFDLARFGYEVFRPS 72

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQ+D++I AGTLT KMA  L+R+Y+QMPEP+YVI+MGSCAN GG +  SY+VV G D +
Sbjct: 73  PRQADLLIAAGTLTWKMAPVLKRLYEQMPEPKYVIAMGSCANTGGPFADSYAVVPGVDYV 132

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           +PVD+Y+PGCPP  EALI+GIL L++KI+  G VK
Sbjct: 133 IPVDVYIPGCPPRPEALIHGILQLKRKIQNPGVVK 167


>gi|167646797|ref|YP_001684460.1| NADH dehydrogenase subunit B [Caulobacter sp. K31]
 gi|218527984|sp|B0SZ51|NUOB_CAUSK RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|167349227|gb|ABZ71962.1| NADH-quinone oxidoreductase, B subunit [Caulobacter sp. K31]
          Length = 196

 Score =  225 bits (573), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 130/162 (80%), Positives = 146/162 (90%)

Query: 23  DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82
           D  F  +S ++  KGF+  + D L+TWARTGSLMWMTFGLACCAVEMM ++MPRYDLER+
Sbjct: 34  DPYFDGLSGQLADKGFVTAAADDLITWARTGSLMWMTFGLACCAVEMMHSAMPRYDLERY 93

Query: 83  GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142
           GFAPRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYY+YSYSV
Sbjct: 94  GFAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYYYSYSV 153

Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           VRGCDRIVP+DIYVPGCPPTAEAL+YG+L LQKKIRR G ++
Sbjct: 154 VRGCDRIVPIDIYVPGCPPTAEALVYGVLQLQKKIRRTGTIE 195


>gi|223936528|ref|ZP_03628439.1| NADH-quinone oxidoreductase, B subunit [bacterium Ellin514]
 gi|223894692|gb|EEF61142.1| NADH-quinone oxidoreductase, B subunit [bacterium Ellin514]
          Length = 203

 Score =  224 bits (572), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 79/152 (51%), Positives = 109/152 (71%), Gaps = 1/152 (0%)

Query: 27  SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA- 85
             + +E++ +G   TS++ L  W R  S+  M FGLACCA+EM+  +M RYDL RFG   
Sbjct: 3   EGLRNELSKQGIFTTSMEALYNWGRKNSVWPMQFGLACCAIEMIATTMARYDLARFGAEV 62

Query: 86  PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRG 145
            R SPRQ+D+MIVAGT+T KMA  + R+Y+QMPEP+YVI+MG+CA  GG +   Y+V++G
Sbjct: 63  FRPSPRQADLMIVAGTVTKKMAPQVVRLYNQMPEPKYVIAMGACAISGGPFKQGYNVLKG 122

Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
            DR +PVD+++PGCPP  EALI   + LQ+KI
Sbjct: 123 IDRFIPVDVHIPGCPPRPEALIEAFMALQRKI 154


>gi|161784196|ref|YP_001595512.1| ndhK protein [Lemna minor]
 gi|88696774|gb|ABD48499.1| ndhK protein [Lemna minor]
          Length = 243

 Score =  224 bits (572), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 69/151 (45%), Positives = 102/151 (67%), Gaps = 1/151 (0%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP 90
            +      + T+++ L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SP
Sbjct: 28  DQTMPNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFAALIGSRFDFDRYGLVPRSSP 87

Query: 91  RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGCDRI 149
           RQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D++
Sbjct: 88  RQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKL 147

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           +PVD+Y+PGCPP  EA+I  I  L+KKI R 
Sbjct: 148 IPVDVYLPGCPPKPEAVIDAITKLRKKISRE 178


>gi|153807451|ref|ZP_01960119.1| hypothetical protein BACCAC_01731 [Bacteroides caccae ATCC 43185]
 gi|149129813|gb|EDM21025.1| hypothetical protein BACCAC_01731 [Bacteroides caccae ATCC 43185]
          Length = 200

 Score =  224 bits (572), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 73/160 (45%), Positives = 107/160 (66%), Gaps = 3/160 (1%)

Query: 22  VDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDL 79
            +    ++  E+   G    +  +D  + W R+ SL  +TF  +CC +E M     RYD+
Sbjct: 19  DNESLEKLVRELNAGGANVALGVLDDFINWGRSNSLWPLTFATSCCGIEFMALGAARYDM 78

Query: 80  ERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY 138
            RFGF   RASPRQ+D+++V GT+TNKMA  L+R+YDQMP+P+YV+++G CA  GG +  
Sbjct: 79  ARFGFEVARASPRQADMIMVCGTITNKMAPVLKRLYDQMPDPKYVVAVGGCAVSGGPFKK 138

Query: 139 SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           SY VV G D+I+PVD+Y+PGCPP  EA  YG++ LQ+K++
Sbjct: 139 SYHVVNGVDKILPVDVYIPGCPPRPEAFYYGMMQLQRKVK 178


>gi|328950032|ref|YP_004367367.1| NAD(P)H-quinone oxidoreductase subunit K [Marinithermus
           hydrothermalis DSM 14884]
 gi|328450356|gb|AEB11257.1| NAD(P)H-quinone oxidoreductase subunit K [Marinithermus
           hydrothermalis DSM 14884]
          Length = 179

 Score =  224 bits (572), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 87/154 (56%), Positives = 115/154 (74%), Gaps = 2/154 (1%)

Query: 26  FSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA 85
           F R   E+  +G   T++++LV W R+ SL   TFGLACCA+EMM ++  R DL RFG  
Sbjct: 7   FERDVQELERQGVFFTTLEKLVAWGRSNSLWPATFGLACCAIEMMASTDARNDLARFGSE 66

Query: 86  -PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR 144
             RASPRQ+DVMIVAG L+ KMA  +RRVYDQMP+P++VISMG+CA+ GG ++  Y++V+
Sbjct: 67  VFRASPRQADVMIVAGRLSKKMAPVMRRVYDQMPDPKWVISMGACASSGGMFNN-YAIVQ 125

Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
             D +VPVD++VPGCPP  EALIY ++ LQKKIR
Sbjct: 126 NVDSVVPVDVFVPGCPPRPEALIYAVMQLQKKIR 159


>gi|242310555|ref|ZP_04809710.1| NADH dehydrogenase I [Helicobacter pullorum MIT 98-5489]
 gi|239522953|gb|EEQ62819.1| NADH dehydrogenase I [Helicobacter pullorum MIT 98-5489]
          Length = 176

 Score =  224 bits (572), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 85/147 (57%), Positives = 112/147 (76%), Gaps = 1/147 (0%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
             +TS+D+L+ W R+ SL  MT+GLACCA+EMM     RYD +RFG   RASPRQSDVMI
Sbjct: 23  IALTSLDKLINWGRSNSLWAMTYGLACCAIEMMATGASRYDFDRFGTIFRASPRQSDVMI 82

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           +AGT+T K A  +RR+YDQMPEP++VISMGSCAN GG ++ +Y+ V+G DRI+PVDIY+P
Sbjct: 83  IAGTVTKKHAQFVRRLYDQMPEPKWVISMGSCANTGGMFN-TYATVQGVDRIIPVDIYLP 141

Query: 158 GCPPTAEALIYGILLLQKKIRRVGNVK 184
           GC P  E L Y +++LQ+KIR+    +
Sbjct: 142 GCSPRPETLQYALMVLQQKIRKEKANR 168


>gi|123965561|ref|YP_001010642.1| NADH dehydrogenase subunit B [Prochlorococcus marinus str. MIT
           9515]
 gi|218527921|sp|A2BUS4|NDHK_PROM5 RecName: Full=NAD(P)H-quinone oxidoreductase subunit K; AltName:
           Full=NAD(P)H dehydrogenase I subunit K; AltName:
           Full=NDH-1 subunit K; Short=NDH-K
 gi|123199927|gb|ABM71535.1| putative respiratory-chain NADH dehydrogenase subunit
           [Prochlorococcus marinus str. MIT 9515]
          Length = 244

 Score =  224 bits (572), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 71/152 (46%), Positives = 104/152 (68%), Gaps = 1/152 (0%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
             +  ++TS+D L  WAR  SL  + +G ACC +E       R+D +RFG  PR+SPRQ+
Sbjct: 30  LSENIIMTSLDDLHNWARLSSLWPLLYGTACCFIEFAALIGSRFDFDRFGLVPRSSPRQA 89

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGCDRIVPV 152
           D++IVAGT+T KMA AL R+Y+QMPEP+YVI+MG+C   GG +   S + VRG D+++PV
Sbjct: 90  DLLIVAGTVTMKMAPALVRLYEQMPEPKYVIAMGACTITGGMFSADSTTAVRGVDKLIPV 149

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           D+Y+PGCPP  EA+   ++ L+KK+     ++
Sbjct: 150 DLYLPGCPPRPEAIFDAVIKLRKKVGNESILE 181


>gi|67925382|ref|ZP_00518732.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit [Crocosphaera
           watsonii WH 8501]
 gi|67852778|gb|EAM48187.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit [Crocosphaera
           watsonii WH 8501]
          Length = 247

 Score =  224 bits (572), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 75/181 (41%), Positives = 113/181 (62%), Gaps = 2/181 (1%)

Query: 1   MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTF 60
           M L T +      Q         A  S+++ +++    ++T+VD L  WAR  SL  + +
Sbjct: 1   MSLNTTSDPSAFEQLQKEKILNPAARSQVTQDLSE-NIILTTVDDLHNWARLSSLWPLLY 59

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           G ACC +E       R+D +RFG  PR+SPRQ+D++I AGT+T KMA AL R+Y++MP+P
Sbjct: 60  GTACCFIEFAALIGSRFDFDRFGLVPRSSPRQADLLITAGTVTMKMAPALVRLYEEMPDP 119

Query: 121 RYVISMGSCANGGGYY-HYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           +YVI+MG+C   GG +   S + VRG D+++PVD+Y+PGCPP  EA+   I+ L+KK+  
Sbjct: 120 KYVIAMGACTITGGMFSSDSTTAVRGVDKLIPVDVYIPGCPPRPEAIFDAIIKLRKKVSN 179

Query: 180 V 180
            
Sbjct: 180 E 180


>gi|78043958|ref|YP_360256.1| NADH dehydrogenase subunit B [Carboxydothermus hydrogenoformans
           Z-2901]
 gi|123576172|sp|Q3AC78|NUOB_CARHZ RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|77996073|gb|ABB14972.1| proton-translocating NADH-quinone oxidoreductase, B subunit
           [Carboxydothermus hydrogenoformans Z-2901]
          Length = 166

 Score =  224 bits (572), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 80/160 (50%), Positives = 108/160 (67%), Gaps = 1/160 (0%)

Query: 26  FSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA 85
                 ++  K   +T++D +  WAR  SL  +TFGLACCA+E+M A  P+YD  RFG+ 
Sbjct: 6   IQSEEEKLIGKNVFLTTLDAVFNWARGNSLWPLTFGLACCAIEVMAAGGPKYDFSRFGYE 65

Query: 86  P-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR 144
             R SPR +D+MIVAGT+T KM   + R+Y+QM EP+YVI+MGSCA  GG +  SY VV 
Sbjct: 66  VWRPSPRHADLMIVAGTITKKMQPLVLRLYEQMAEPKYVIAMGSCAISGGPFVDSYHVVP 125

Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           G +  +PVD+Y+PGCPP  EAL+YG L L++KI+    VK
Sbjct: 126 GANTFLPVDVYIPGCPPRPEALLYGWLELKRKIQNPRVVK 165


>gi|154282161|ref|XP_001541893.1| NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial
           precursor [Ajellomyces capsulatus NAm1]
 gi|150412072|gb|EDN07460.1| NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial
           precursor [Ajellomyces capsulatus NAm1]
          Length = 242

 Score =  224 bits (572), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 98/173 (56%), Positives = 125/173 (72%)

Query: 4   TTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLA 63
            T  +   +      +E+  +       +    G  + S+D +  WAR GSL  ++ GLA
Sbjct: 56  ITPRENTANVPDVARMERNASLLPSQDEKTGAMGHFLGSIDAVTNWARQGSLWPVSLGLA 115

Query: 64  CCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYV 123
           CC VEMM  SMPRYD +R G   RASPRQSD++IVAGT+TNKMA ALR VYDQMP+P++V
Sbjct: 116 CCGVEMMAVSMPRYDQDRLGTIFRASPRQSDLLIVAGTVTNKMAPALRLVYDQMPDPKWV 175

Query: 124 ISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKK 176
           ISMGSCANGGGYYHYSYSVVRG DR++PVD+++PGCPPTAEAL+Y + +L+KK
Sbjct: 176 ISMGSCANGGGYYHYSYSVVRGVDRLLPVDLFLPGCPPTAEALLYAMAVLRKK 228


>gi|224026051|ref|ZP_03644417.1| hypothetical protein BACCOPRO_02804 [Bacteroides coprophilus DSM
           18228]
 gi|224019287|gb|EEF77285.1| hypothetical protein BACCOPRO_02804 [Bacteroides coprophilus DSM
           18228]
          Length = 200

 Score =  224 bits (572), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 77/161 (47%), Positives = 110/161 (68%), Gaps = 3/161 (1%)

Query: 21  KVDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78
           K +    R+  E+   G   ++ ++D+L+ W R+ SL  +TFG +CCA+E M     RYD
Sbjct: 17  KNNDYLQRMVDELNRDGAGIIIGTIDELIEWGRSNSLWSLTFGTSCCAIEFMALGAARYD 76

Query: 79  LERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137
           + RFGF   R SPRQ+D+++V GT+T KMA  L+R+YDQM EP+YVI++G C   GG + 
Sbjct: 77  MARFGFEVTRNSPRQADMIMVLGTITYKMAPVLKRLYDQMAEPKYVIAVGGCTISGGPFI 136

Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
            SY VV G D+I+PVD+Y+PGCPP  EA  YG++ LQ+KI+
Sbjct: 137 KSYHVVNGIDKIIPVDVYIPGCPPRPEAFYYGMMQLQRKIK 177


>gi|198276152|ref|ZP_03208683.1| hypothetical protein BACPLE_02341 [Bacteroides plebeius DSM 17135]
 gi|198270964|gb|EDY95234.1| hypothetical protein BACPLE_02341 [Bacteroides plebeius DSM 17135]
          Length = 193

 Score =  224 bits (572), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 74/143 (51%), Positives = 105/143 (73%), Gaps = 1/143 (0%)

Query: 37  GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95
           G ++ +VD+L+ W R+ SL  +TFG +CCA+E M     RYD+ RFGF   R SPRQ+D+
Sbjct: 36  GIVLGTVDELINWGRSNSLWSLTFGTSCCAIEFMALGAARYDMARFGFEVTRNSPRQADM 95

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
           ++V GT+T+KMA  L+R+YDQM EP+YV+++G C   GG +  SY VV G D+I+PVD+Y
Sbjct: 96  IMVLGTITHKMAPVLKRLYDQMAEPKYVVAVGGCTISGGPFIKSYHVVNGIDKIIPVDVY 155

Query: 156 VPGCPPTAEALIYGILLLQKKIR 178
           +PGCPP  EA  YG++ LQ+KI+
Sbjct: 156 IPGCPPRPEAFFYGMMQLQRKIK 178


>gi|32399383|emb|CAD28725.1| photosystem II G protein [Calycanthus floridus var. glaucus]
          Length = 248

 Score =  224 bits (572), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 74/177 (41%), Positives = 111/177 (62%), Gaps = 2/177 (1%)

Query: 5   TVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLAC 64
           + NQ    G+ S        +F  +    T    + T+++ L  W+R  SL  + +G +C
Sbjct: 8   SDNQNQKEGKDSIETVMNSTEFPLL-DRTTQNSVISTTLNDLSNWSRLSSLWPLLYGTSC 66

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E       R+D +R+G  PR+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI
Sbjct: 67  CFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVI 126

Query: 125 SMGSCANGGGYYH-YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           +MG+C   GG +   SYS VRG D+++PVD+Y+PGCPP  EA+I  I  L+KK+ R 
Sbjct: 127 AMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKKVSRE 183


>gi|218527963|sp|A9L9A0|NDHK_LEMMI RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
          Length = 225

 Score =  224 bits (572), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 69/151 (45%), Positives = 102/151 (67%), Gaps = 1/151 (0%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP 90
            +      + T+++ L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SP
Sbjct: 10  DQTMPNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFAALIGSRFDFDRYGLVPRSSP 69

Query: 91  RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGCDRI 149
           RQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D++
Sbjct: 70  RQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKL 129

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           +PVD+Y+PGCPP  EA+I  I  L+KKI R 
Sbjct: 130 IPVDVYLPGCPPKPEAVIDAITKLRKKISRE 160


>gi|91214129|ref|YP_538751.1| NADH dehydrogenase subunit K [Glycine max]
 gi|88984614|sp|P31175|NDHK_SOYBN RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
 gi|83595730|gb|ABC25111.1| NADH-plastoquinone oxidoreductase subunit K [Glycine max]
          Length = 212

 Score =  224 bits (571), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 70/154 (45%), Positives = 104/154 (67%), Gaps = 1/154 (0%)

Query: 28  RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
            +  + T    + T+++ L  W+R  SL  + +G +CC +E       R+D +R+G  PR
Sbjct: 7   PLLDQTTKNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66

Query: 88  ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146
           +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG 
Sbjct: 67  SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126

Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           D+++PVD+Y+PGCPP  EA+I  I  L+KKI R 
Sbjct: 127 DKLIPVDVYLPGCPPKPEAIIDAITKLRKKISRE 160


>gi|295086644|emb|CBK68167.1| NADH dehydrogenase subunit B [Bacteroides xylanisolvens XB1A]
          Length = 195

 Score =  224 bits (571), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 73/160 (45%), Positives = 107/160 (66%), Gaps = 3/160 (1%)

Query: 22  VDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDL 79
            +    ++  E+   G    +  +D  + W R+ SL  +TF  +CC +E M     RYD+
Sbjct: 19  DNESLEKLVKELNAGGANVALGVLDDFINWGRSNSLWPLTFATSCCGIEFMALGAARYDM 78

Query: 80  ERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY 138
            RFGF   RASPRQ+D+++V GT+TNKMA  L+R+YDQMP+P+YV+++G CA  GG +  
Sbjct: 79  ARFGFEVARASPRQADMIMVCGTITNKMAPVLKRLYDQMPDPKYVVAVGGCAVSGGPFKK 138

Query: 139 SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           SY VV G D+I+PVD+Y+PGCPP  EA  YG++ LQ+K++
Sbjct: 139 SYHVVNGVDKILPVDVYIPGCPPRPEAFYYGMMQLQRKVK 178


>gi|317503351|ref|ZP_07961398.1| NADH-quinone oxidoreductase subunit B [Prevotella salivae DSM
           15606]
 gi|315665530|gb|EFV05150.1| NADH-quinone oxidoreductase subunit B [Prevotella salivae DSM
           15606]
          Length = 240

 Score =  224 bits (571), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 75/161 (46%), Positives = 111/161 (68%), Gaps = 3/161 (1%)

Query: 21  KVDADFSRISSEITHKGF--LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78
           K +    +I+ E+   G   +V S+DQ + W R+ SL  +TFG +CC +E M     RYD
Sbjct: 17  KDNDTLEKITKELNEGGVNVIVGSLDQAINWGRSNSLWSLTFGTSCCGIEFMAVGCARYD 76

Query: 79  LERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137
             RFGF   R SPRQ+D+++ AGT+TNKMA   +R+YD++ EP+YV+++G C   GG + 
Sbjct: 77  FSRFGFEVTRNSPRQADLIMCAGTITNKMAPVFKRLYDEIAEPKYVVAVGGCTISGGPFK 136

Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
            SY+VVRG D +VPVD+Y+PGCPP  EA++YG++ LQ+K++
Sbjct: 137 KSYNVVRGIDELVPVDVYIPGCPPRPEAILYGMMQLQRKVK 177


>gi|189468077|ref|ZP_03016862.1| hypothetical protein BACINT_04471 [Bacteroides intestinalis DSM
           17393]
 gi|189436341|gb|EDV05326.1| hypothetical protein BACINT_04471 [Bacteroides intestinalis DSM
           17393]
          Length = 199

 Score =  224 bits (571), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 73/160 (45%), Positives = 107/160 (66%), Gaps = 3/160 (1%)

Query: 22  VDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDL 79
            +    ++  E+   G    +  +D  + W R+ SL  +TF  +CC +E M     RYD+
Sbjct: 19  DNETLEKLVRELNAGGANVALGVLDDFINWGRSNSLWPLTFATSCCGIEFMALGAARYDM 78

Query: 80  ERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY 138
            RFGF   RASPRQ+D+++V GT+TNKMA  L+R+YDQMP+P+YV+++G CA  GG +  
Sbjct: 79  ARFGFEVARASPRQADMIMVCGTITNKMAPVLKRLYDQMPDPKYVVAVGGCAVSGGPFKK 138

Query: 139 SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           SY VV G D+I+PVD+Y+PGCPP  EA  YG++ LQ+K++
Sbjct: 139 SYHVVNGVDKILPVDVYIPGCPPRPEAFYYGMMQLQRKVK 178


>gi|186685599|ref|YP_001868795.1| NADH dehydrogenase subunit B [Nostoc punctiforme PCC 73102]
 gi|218527915|sp|B2J6S6|NDHK_NOSP7 RecName: Full=NAD(P)H-quinone oxidoreductase subunit K; AltName:
           Full=NAD(P)H dehydrogenase I subunit K; AltName:
           Full=NDH-1 subunit K; Short=NDH-K
 gi|186468051|gb|ACC83852.1| NADH-quinone oxidoreductase, B subunit [Nostoc punctiforme PCC
           73102]
          Length = 245

 Score =  224 bits (571), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 74/176 (42%), Positives = 113/176 (64%), Gaps = 4/176 (2%)

Query: 6   VNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACC 65
           +N  + +      +  ++   + ++ +++    ++T+VD L  WAR  SL  + FG ACC
Sbjct: 3   LNSNLTTQDKQRIINPIER--TNVTQDLSE-NVILTTVDDLYDWARLSSLWPLLFGTACC 59

Query: 66  AVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVIS 125
            +E       R+D +RFG  PR+SPRQ+D++I AGT+T KMA  L R+Y+QMPEP+YVI+
Sbjct: 60  FIEFAALIGSRFDFDRFGLIPRSSPRQADLIITAGTITMKMAPQLVRLYEQMPEPKYVIA 119

Query: 126 MGSCANGGGYYH-YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           MG+C   GG +   S + VRG D+++PVD+Y+PGCPP  EA+I  I+ L+KKI   
Sbjct: 120 MGACTITGGMFSVDSPTAVRGVDKLIPVDVYLPGCPPRPEAIIDAIIKLRKKISNE 175


>gi|78778680|ref|YP_396792.1| NADH dehydrogenase subunit B [Prochlorococcus marinus str. MIT
           9312]
 gi|123554667|sp|Q31CN9|NDHK_PROM9 RecName: Full=NAD(P)H-quinone oxidoreductase subunit K; AltName:
           Full=NAD(P)H dehydrogenase I subunit K; AltName:
           Full=NDH-1 subunit K; Short=NDH-K
 gi|78712179|gb|ABB49356.1| NADH dehydrogenase subunit B [Prochlorococcus marinus str. MIT
           9312]
          Length = 244

 Score =  224 bits (571), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 71/152 (46%), Positives = 104/152 (68%), Gaps = 1/152 (0%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
             +  ++TS+D L  WAR  SL  + +G ACC +E       R+D +RFG  PR+SPRQ+
Sbjct: 30  LSENIILTSLDDLHNWARLSSLWPLLYGTACCFIEFAALIGSRFDFDRFGLVPRSSPRQA 89

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGCDRIVPV 152
           D++IVAGT+T KMA AL R+Y+QMPEP+YVI+MG+C   GG +   S + VRG D+++PV
Sbjct: 90  DLLIVAGTVTMKMAPALVRLYEQMPEPKYVIAMGACTITGGMFSADSTTAVRGVDKLIPV 149

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           D+Y+PGCPP  EA+   ++ L+KK+     ++
Sbjct: 150 DLYLPGCPPRPEAIFDAVIKLRKKVGNESILE 181


>gi|189459784|ref|ZP_03008569.1| hypothetical protein BACCOP_00413 [Bacteroides coprocola DSM 17136]
 gi|189433513|gb|EDV02498.1| hypothetical protein BACCOP_00413 [Bacteroides coprocola DSM 17136]
          Length = 200

 Score =  224 bits (571), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 78/161 (48%), Positives = 110/161 (68%), Gaps = 3/161 (1%)

Query: 21  KVDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78
           K +    R+  E+   G   ++ +VDQL+ W R+ SL  +TFG +CCA+E M     RYD
Sbjct: 17  KNNDYLQRMVDELNRDGAGVVIGTVDQLIEWGRSNSLWSLTFGTSCCAIEFMALGAARYD 76

Query: 79  LERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137
           + RFGF   R SPRQ+D+++V GT+T KMA  L+R+YDQM EP+YV+++G C   GG + 
Sbjct: 77  MARFGFEVTRNSPRQADMIMVLGTITYKMAPVLKRLYDQMAEPKYVVAVGGCTISGGPFI 136

Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
            SY VV G D+I+PVD+Y+PGCPP  EA  YG++ LQ+KI+
Sbjct: 137 KSYHVVNGIDKIIPVDVYIPGCPPRPEAFYYGMMQLQRKIK 177


>gi|332826700|gb|EGJ99522.1| NADH-quinone oxidoreductase subunit B [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 197

 Score =  224 bits (571), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 79/161 (49%), Positives = 107/161 (66%), Gaps = 3/161 (1%)

Query: 21  KVDADFSRISSEITHKGF--LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78
           K +        E+   G   +V  +D L+ W R+ S+  + F  +CC +E M ++  RYD
Sbjct: 24  KDNEYLEDYIKELNENGVPVVVGKLDDLINWGRSNSVWPLAFATSCCGIEFMASAAARYD 83

Query: 79  LERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137
           L RFG    R SPRQ+D M+VAGT+ +KMA  L+RVYDQM EP+YV++MGSCA  GG + 
Sbjct: 84  LARFGMEVTRNSPRQADTMVVAGTIVHKMAPLLKRVYDQMAEPKYVVAMGSCAISGGPFV 143

Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
            SY VV+G D I+PVD+YVPGCPP  EAL YG++ LQ+KI+
Sbjct: 144 DSYHVVKGIDEIMPVDVYVPGCPPRPEALFYGLMQLQRKIK 184


>gi|332255974|ref|XP_003277096.1| PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 7,
           mitochondrial-like [Nomascus leucogenys]
          Length = 156

 Score =  224 bits (571), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 111/149 (74%), Positives = 124/149 (83%), Gaps = 5/149 (3%)

Query: 36  KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDV 95
           +G+ +T    L       SL  MTFGLACCAVEMM  + PRYD++RFG   RASPRQSDV
Sbjct: 8   RGWRLTRARPL-----QSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQSDV 62

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
           MIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY
Sbjct: 63  MIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 122

Query: 156 VPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           +PGCPPTAEAL+YGIL LQ+KI+R   ++
Sbjct: 123 IPGCPPTAEALLYGILQLQRKIKRERRLQ 151


>gi|193237723|dbj|BAG50130.1| NADH dehydrogenase 27 kD subunit [Takakia lepidozioides]
          Length = 257

 Score =  224 bits (571), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 70/160 (43%), Positives = 107/160 (66%), Gaps = 1/160 (0%)

Query: 22  VDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLER 81
           +++  S +  +      ++T+ +    WAR  SL  + +G +CC +E       R+D +R
Sbjct: 22  INSIESSLLDQTIPNSIILTTFNDFSNWARLSSLWPLLYGTSCCFIEFASLIGSRFDFDR 81

Query: 82  FGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSY 140
           +G  PR+SPRQ+D++I AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SY
Sbjct: 82  YGLVPRSSPRQADLVITAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSY 141

Query: 141 SVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           S VRG D+++PVDIY+PGCPP  EA+I  I+ L+KK+ + 
Sbjct: 142 STVRGVDKLIPVDIYLPGCPPKPEAIIDAIIKLRKKVAQE 181


>gi|193237704|dbj|BAG50114.1| NADH dehydrogenase 27 kD subunit [Takakia lepidozioides]
          Length = 259

 Score =  224 bits (571), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 70/160 (43%), Positives = 107/160 (66%), Gaps = 1/160 (0%)

Query: 22  VDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLER 81
           +++  S +  +      ++T+ +    WAR  SL  + +G +CC +E       R+D +R
Sbjct: 22  INSIESSLLDQTIPNSIILTTFNDFSNWARLSSLWPLLYGTSCCFIEFASLIGSRFDFDR 81

Query: 82  FGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSY 140
           +G  PR+SPRQ+D++I AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SY
Sbjct: 82  YGLVPRSSPRQADLVITAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSY 141

Query: 141 SVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           S VRG D+++PVDIY+PGCPP  EA+I  I+ L+KK+ + 
Sbjct: 142 STVRGVDKLIPVDIYLPGCPPKPEAIIDAIIKLRKKVAQE 181


>gi|17231333|ref|NP_487881.1| NADH dehydrogenase subunit B [Nostoc sp. PCC 7120]
 gi|20141594|sp|Q44240|NDHK_ANASP RecName: Full=NAD(P)H-quinone oxidoreductase subunit K; AltName:
           Full=NAD(P)H dehydrogenase I subunit K; AltName:
           Full=NDH-1 subunit K; Short=NDH-K
 gi|17132975|dbj|BAB75540.1| NADH dehydrogenase chain K [Nostoc sp. PCC 7120]
          Length = 245

 Score =  224 bits (571), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 74/173 (42%), Positives = 110/173 (63%), Gaps = 4/173 (2%)

Query: 6   VNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACC 65
           +N  + +      +  ++       ++   +  ++T+VD L  WAR  SL  + FG ACC
Sbjct: 3   LNSDLTTQDKERIINPIERP---TITQDLSENVILTTVDDLYNWARLSSLWPLLFGTACC 59

Query: 66  AVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVIS 125
            +E       R+D +RFG  PR+SPRQ+D++I AGT+T KMA  L R+Y+QMPEP+YVI+
Sbjct: 60  FIEFAALIGSRFDFDRFGLIPRSSPRQADLIITAGTITMKMAPQLVRLYEQMPEPKYVIA 119

Query: 126 MGSCANGGGYYH-YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
           MG+C   GG +   S + VRG D+++PVD+Y+PGCPP  EA+I  I+ L+KKI
Sbjct: 120 MGACTITGGMFSVDSPTAVRGVDKLIPVDVYLPGCPPRPEAIIDAIIKLRKKI 172


>gi|313145380|ref|ZP_07807573.1| trifunctional NADH dehydrogenase I subunit B/C/D [Bacteroides
           fragilis 3_1_12]
 gi|313134147|gb|EFR51507.1| trifunctional NADH dehydrogenase I subunit B/C/D [Bacteroides
           fragilis 3_1_12]
          Length = 203

 Score =  224 bits (571), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 75/160 (46%), Positives = 107/160 (66%), Gaps = 3/160 (1%)

Query: 22  VDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDL 79
            +    ++  E+   G    V  +D L+ W R+ SL  +TF  +CC +E M     RYD+
Sbjct: 26  DNESLEKMVKELNEGGANVFVGVLDDLINWGRSNSLWPLTFATSCCGIEFMALGAARYDM 85

Query: 80  ERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY 138
            RFGF   RASPRQ+D+++V GT+TNKMA  L+R+YDQM +P+YVI++G CA  GG +  
Sbjct: 86  ARFGFEVARASPRQADMIMVCGTITNKMAPVLKRLYDQMADPKYVIAVGGCAVSGGPFRK 145

Query: 139 SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           SY VV G D+I+PVD+Y+PGCPP  EA  YG++ LQ+K++
Sbjct: 146 SYHVVNGVDKILPVDVYIPGCPPRPEAFYYGMMQLQRKVK 185


>gi|118430392|ref|YP_874657.1| NADH-plastoquinone oxidoreductase subunit K [Hordeum vulgare subsp.
           vulgare]
 gi|29367118|gb|AAO72306.1| NdhK [Hordeum vulgare]
 gi|118201046|gb|ABK79417.1| NADH-plastoquinone oxidoreductase subunit K [Hordeum vulgare subsp.
           vulgare]
          Length = 245

 Score =  224 bits (571), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 75/181 (41%), Positives = 113/181 (62%), Gaps = 2/181 (1%)

Query: 1   MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTF 60
           M LT    K   G+ S        +F  +  + +    + T+++ L  W+R  SL  + +
Sbjct: 1   MVLTEYLDKKKEGKDSIETVMNLIEFPLL-DQTSSNSVISTTLNDLSNWSRLSSLWPLLY 59

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           G +CC +E       R+D +R+G  PR+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP
Sbjct: 60  GTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEP 119

Query: 121 RYVISMGSCANGGGYYH-YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           +YVI+MG+C   GG +   SYS VRG D+++PVD+Y+PGCPP  EA+I  +  L+KKI R
Sbjct: 120 KYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEAVIDALTKLRKKISR 179

Query: 180 V 180
            
Sbjct: 180 E 180


>gi|193216261|ref|YP_001997460.1| NADH dehydrogenase subunit B [Chloroherpeton thalassium ATCC 35110]
 gi|238065031|sp|B3QY47|NUOB2_CHLT3 RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName:
           Full=NADH dehydrogenase I subunit B 2; AltName:
           Full=NDH-1 subunit B 2
 gi|193089738|gb|ACF15013.1| NADH-quinone oxidoreductase, B subunit [Chloroherpeton thalassium
           ATCC 35110]
          Length = 195

 Score =  224 bits (570), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 87/154 (56%), Positives = 112/154 (72%), Gaps = 1/154 (0%)

Query: 29  ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88
           +  +    G ++T+ + ++ WAR  SL  M FGLACCA+EMM  +   YDLERFG  PR+
Sbjct: 4   LDQKFDKGGVVITAAENVLNWARLSSLWPMGFGLACCAIEMMATNASNYDLERFGIFPRS 63

Query: 89  SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCD 147
           SPRQSD+MIVAGT+T KMA  + R+Y+QMPEPRYV+SMGSC+N GG Y    Y VV+G D
Sbjct: 64  SPRQSDLMIVAGTVTFKMAERVVRLYEQMPEPRYVLSMGSCSNCGGPYWEHGYHVVKGVD 123

Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
           RI+PVD+YVPGCPP  EALI G++ +Q+ IR   
Sbjct: 124 RIIPVDVYVPGCPPRPEALIGGLMKVQELIREEK 157


>gi|11467814|ref|NP_050865.1| NADH dehydrogenase subunit K [Nephroselmis olivacea]
 gi|59798437|sp|Q9TKY0|NDHK_NEPOL RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
 gi|5880743|gb|AAD54836.1|AF137379_59 subunit K of NADH-ubiquinone oxidoreductase [Nephroselmis olivacea]
          Length = 237

 Score =  224 bits (570), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 74/176 (42%), Positives = 115/176 (65%), Gaps = 2/176 (1%)

Query: 10  IISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEM 69
           +IS  S+          S I+ E+ +   ++T+++ L  WAR  SL  + +G +CC +E 
Sbjct: 2   VISSLSNSQPLNAPVSSSPITQELAN-NLILTTLNDLYNWARLSSLWPLLYGTSCCFIEF 60

Query: 70  MQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSC 129
                 R+D +RFG  PR+SPRQ+D++I AGT+T KMA +L R+Y+QMP+P+YVI+MG+C
Sbjct: 61  ACLIGSRFDFDRFGLVPRSSPRQADLIITAGTVTMKMAPSLVRLYEQMPDPKYVIAMGAC 120

Query: 130 ANGGGYYH-YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
              GG +   SYS VRG D+++PVD+Y+PGCPP  EA+I  ++ L+KK+ +    +
Sbjct: 121 TITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEAIIDAVIKLRKKVAQEQTAE 176


>gi|254526480|ref|ZP_05138532.1| NADH dehydrogenase i chain b or ndhk [Prochlorococcus marinus str.
           MIT 9202]
 gi|221537904|gb|EEE40357.1| NADH dehydrogenase i chain b or ndhk [Prochlorococcus marinus str.
           MIT 9202]
          Length = 241

 Score =  224 bits (570), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 71/152 (46%), Positives = 104/152 (68%), Gaps = 1/152 (0%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
             +  ++TS+D L  WAR  SL  + +G ACC +E       R+D +RFG  PR+SPRQ+
Sbjct: 30  LSENIILTSLDDLHNWARLSSLWPLLYGTACCFIEFAALIGSRFDFDRFGLVPRSSPRQA 89

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGCDRIVPV 152
           D++IVAGT+T KMA AL R+Y+QMPEP+YVI+MG+C   GG +   S + VRG D+++PV
Sbjct: 90  DLLIVAGTVTMKMAPALVRLYEQMPEPKYVIAMGACTITGGMFSADSTTAVRGVDKLIPV 149

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           D+Y+PGCPP  EA+   ++ L+KK+     ++
Sbjct: 150 DLYLPGCPPRPEAIFDAVIKLRKKVGNESILE 181


>gi|226355360|ref|YP_002785100.1| NADH dehydrogenase subunit B [Deinococcus deserti VCD115]
 gi|259514659|sp|C1D0H2|NUOB_DEIDV RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|226317350|gb|ACO45346.1| putative NADH dehydrogenase (quinone), subunit B (NADH-quinone
           oxidoreductase, subunit B) [Deinococcus deserti VCD115]
          Length = 178

 Score =  224 bits (570), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 86/154 (55%), Positives = 116/154 (75%), Gaps = 2/154 (1%)

Query: 26  FSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA 85
           F R   E+  +G L +++++LV W R+ SL   TFGLACCA+EMM ++  R D+ RFG  
Sbjct: 7   FDRDWQELESEGILFSNLEKLVAWGRSNSLWPATFGLACCAIEMMSSTNARNDMARFGSE 66

Query: 86  -PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR 144
             RASPRQ+DVMIVAG L+ KMA  +RRVYDQMP+P++VI+MG+CA+ GG ++  Y++V+
Sbjct: 67  VFRASPRQADVMIVAGRLSKKMAPVMRRVYDQMPDPKWVIAMGACASSGGMFNN-YAIVQ 125

Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
             D +VPVDIYVPGCPP  EALIY ++ LQKK+R
Sbjct: 126 NVDSVVPVDIYVPGCPPRPEALIYAVMQLQKKVR 159


>gi|157325534|ref|YP_001468312.1| NADH dehydrogenase subunit K [Ipomoea purpurea]
 gi|218527909|sp|A7Y3E1|NDHK_IPOPU RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
 gi|157056762|gb|ABV02352.1| NADH-plastoquinone oxidoreductase subunit K [Ipomoea purpurea]
          Length = 235

 Score =  224 bits (570), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 69/160 (43%), Positives = 105/160 (65%), Gaps = 1/160 (0%)

Query: 22  VDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLER 81
           +++    +         + T+++ L  W+R  SL  + +G +CC +E       R+D +R
Sbjct: 1   MNSIQFPLLDRTAKNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDR 60

Query: 82  FGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSY 140
           +G  PR+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SY
Sbjct: 61  YGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSY 120

Query: 141 SVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           S VRG D+++PVD+Y+PGCPP  EA+I  I  L+KKI R 
Sbjct: 121 STVRGVDKLIPVDVYLPGCPPKPEAIIDAITKLRKKISRE 160


>gi|148657099|ref|YP_001277304.1| NADH dehydrogenase subunit B [Roseiflexus sp. RS-1]
 gi|238065018|sp|A5UXK1|NUOB1_ROSS1 RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName:
           Full=NADH dehydrogenase I subunit B 1; AltName:
           Full=NDH-1 subunit B 1
 gi|148569209|gb|ABQ91354.1| NADH-quinone oxidoreductase, B subunit [Roseiflexus sp. RS-1]
          Length = 268

 Score =  224 bits (570), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 82/164 (50%), Positives = 115/164 (70%), Gaps = 3/164 (1%)

Query: 24  ADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFG 83
           +D   I  E    G  +T++ +   W R  S+  ++FGLACCA+EMM   + R+DL RFG
Sbjct: 2   SDDREIQLEAEKHGVFLTTMQRFYNWGRRSSIWPLSFGLACCAIEMMATGLARFDLARFG 61

Query: 84  FA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142
               RASPRQ+D+MIVAGT+T KMA  + R+Y+QMPEPRYVISMG+CA  GG +   Y+V
Sbjct: 62  AEMFRASPRQADLMIVAGTVTKKMAPQVVRLYNQMPEPRYVISMGACATSGGPFRDGYNV 121

Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI--RRVGNVK 184
           +RG D ++PVD+Y+PGCPP  EAL++ ++ LQK+I  +R+  V+
Sbjct: 122 LRGIDLLIPVDVYIPGCPPRPEALLHALMTLQKQIDAQRLNQVR 165


>gi|167841106|ref|ZP_02467790.1| NADH dehydrogenase subunit B [Burkholderia thailandensis MSMB43]
          Length = 167

 Score =  224 bits (570), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 108/151 (71%), Positives = 126/151 (83%)

Query: 32  EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPR 91
            +   GF+VT++D  +  A+  SL +MTFGLACCAVEMM A+  RYD++RFG  PRASPR
Sbjct: 7   TLEKDGFIVTTLDAAMAAAQKNSLWYMTFGLACCAVEMMHAAGARYDMDRFGMIPRASPR 66

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
           Q D+MIVAGTLTNKMA A+RRVYDQM EPRYV+SMGSCANGGGYYHYSYSVVRGCDRIVP
Sbjct: 67  QCDLMIVAGTLTNKMAPAMRRVYDQMAEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVP 126

Query: 152 VDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
           VDIYVPGCPPTAEAL+YG++ LQ+K+     
Sbjct: 127 VDIYVPGCPPTAEALVYGLMQLQRKVAERST 157


>gi|300087933|ref|YP_003758455.1| NADH-quinone oxidoreductase subunit B [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
 gi|299527666|gb|ADJ26134.1| NADH-quinone oxidoreductase, B subunit [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
          Length = 203

 Score =  224 bits (570), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 81/157 (51%), Positives = 115/157 (73%), Gaps = 1/157 (0%)

Query: 29  ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APR 87
           ++ +      L+TSVD++V W+R  S+  +TFGLACCA+EMM  +  R+DL RFG    R
Sbjct: 42  LNEDALPPNVLLTSVDKVVNWSRRYSMWPVTFGLACCAIEMMSMAASRFDLARFGMEIFR 101

Query: 88  ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCD 147
           ASPRQ+D+MI+AGTLT KMA  LRR+YDQMP+P++V++MGSC   GG ++ SY+VV G +
Sbjct: 102 ASPRQADLMIIAGTLTWKMAPWLRRIYDQMPDPKWVVAMGSCGISGGLFNDSYAVVPGFN 161

Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           R+VPVD+YVPGCPP  EAL+  I+ +  K+ ++   +
Sbjct: 162 RVVPVDVYVPGCPPRPEALMQAIMDIHAKVDKMSPTR 198


>gi|157412655|ref|YP_001483521.1| NADH dehydrogenase subunit B [Prochlorococcus marinus str. MIT
           9215]
 gi|218527918|sp|A8G2V4|NDHK_PROM2 RecName: Full=NAD(P)H-quinone oxidoreductase subunit K; AltName:
           Full=NAD(P)H dehydrogenase I subunit K; AltName:
           Full=NDH-1 subunit K; Short=NDH-K
 gi|157387230|gb|ABV49935.1| putative respiratory-chain NADH dehydrogenase subunit
           [Prochlorococcus marinus str. MIT 9215]
          Length = 241

 Score =  224 bits (570), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 71/152 (46%), Positives = 104/152 (68%), Gaps = 1/152 (0%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
             +  ++TS+D L  WAR  SL  + +G ACC +E       R+D +RFG  PR+SPRQ+
Sbjct: 30  LSENIILTSLDDLHNWARLSSLWPLLYGTACCFIEFAALIGSRFDFDRFGLVPRSSPRQA 89

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGCDRIVPV 152
           D++IVAGT+T KMA AL R+Y+QMPEP+YVI+MG+C   GG +   S + VRG D+++PV
Sbjct: 90  DLLIVAGTVTMKMAPALVRLYEQMPEPKYVIAMGACTITGGMFSADSTTAVRGVDKLIPV 149

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           D+Y+PGCPP  EA+   ++ L+KK+     ++
Sbjct: 150 DLYLPGCPPRPEAIFDAVIKLRKKVGNESILE 181


>gi|166363918|ref|YP_001656191.1| NADH dehydrogenase subunit B [Microcystis aeruginosa NIES-843]
 gi|218527913|sp|B0JSV5|NDHK_MICAN RecName: Full=NAD(P)H-quinone oxidoreductase subunit K; AltName:
           Full=NAD(P)H dehydrogenase I subunit K; AltName:
           Full=NDH-1 subunit K; Short=NDH-K
 gi|166086291|dbj|BAG00999.1| NADH dehydrogenase subunit [Microcystis aeruginosa NIES-843]
          Length = 247

 Score =  224 bits (570), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 78/175 (44%), Positives = 119/175 (68%), Gaps = 4/175 (2%)

Query: 4   TTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLA 63
           T+  ++II  QS   L  ++   ++++ +++    ++T+VD L  WAR  SL  M +G A
Sbjct: 6   TSEFKQIIEQQSEKILNPIER--TKVTQDLSE-NVILTTVDDLYNWARLSSLWPMLYGTA 62

Query: 64  CCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYV 123
           CC +E       R+D +RFG  PR+SPRQ+D++I AGT+T KMA AL R+Y++MPEP+YV
Sbjct: 63  CCFIEFAALIGSRFDFDRFGLVPRSSPRQADLIITAGTITMKMAPALVRLYEEMPEPKYV 122

Query: 124 ISMGSCANGGGYY-HYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
           I+MG+C   GG +   S + VRG D+++PVD+Y+PGCPP  EA+I  I+ L+KK+
Sbjct: 123 IAMGACTITGGMFSSDSTTAVRGVDKLIPVDVYIPGCPPRPEAIIDAIIKLRKKV 177


>gi|298490489|ref|YP_003720666.1| NADH-quinone oxidoreductase subunit B ['Nostoc azollae' 0708]
 gi|298232407|gb|ADI63543.1| NADH-quinone oxidoreductase, B subunit ['Nostoc azollae' 0708]
          Length = 244

 Score =  224 bits (570), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 76/173 (43%), Positives = 112/173 (64%), Gaps = 4/173 (2%)

Query: 6   VNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACC 65
           +N  I +      +  ++     ++ E++    ++T+VD L  WAR  SL  + FG ACC
Sbjct: 3   LNSNITTQDKELIINPIERPT--VTQELSE-NVILTTVDDLYNWARLSSLWPLLFGTACC 59

Query: 66  AVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVIS 125
            +E       R+D +RFG  PR+SPRQ+D++I AGT+T KMA  L R+Y+QMPEP+YVI+
Sbjct: 60  FIEFAALIGSRFDFDRFGLIPRSSPRQADLIITAGTITMKMAPQLVRLYEQMPEPKYVIA 119

Query: 126 MGSCANGGGYYH-YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
           MG+C   GG +   S + VRG D+++PVD+Y+PGCPP  EA+I  I+ L+KKI
Sbjct: 120 MGACTITGGMFSVDSPTAVRGVDKLIPVDVYLPGCPPRPEAIIDAIIKLRKKI 172


>gi|126442009|ref|YP_001060575.1| putative NADH-quinone oxidoreductase, B subunit [Burkholderia
           pseudomallei 668]
 gi|126221502|gb|ABN85008.1| putative NADH-quinone oxidoreductase, B subunit [Burkholderia
           pseudomallei 668]
          Length = 297

 Score =  224 bits (570), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 107/151 (70%), Positives = 126/151 (83%)

Query: 32  EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPR 91
            +   GF+VT++D  +  A+  SL +MTFGLACCAVEMM A+  RYD++RFG  PRASPR
Sbjct: 137 TLEKDGFIVTTLDAAMAAAQKNSLWYMTFGLACCAVEMMHAAGARYDMDRFGMIPRASPR 196

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
           Q D+MIVAGTLTNKMA A+RRVYDQM EPRYV+SMGSCANGGGYYHYSYSVVRGCDRIVP
Sbjct: 197 QCDLMIVAGTLTNKMAPAMRRVYDQMAEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVP 256

Query: 152 VDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
           VD+YVPGCPPTAEAL+YG++ LQ+K+     
Sbjct: 257 VDVYVPGCPPTAEALVYGLMQLQRKVAERST 287


>gi|78188613|ref|YP_378951.1| NADH dehydrogenase subunit B [Chlorobium chlorochromatii CaD3]
 gi|123580176|sp|Q3ASW7|NUOB_CHLCH RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|78170812|gb|ABB27908.1| NADH dehydrogenase subunit B [Chlorobium chlorochromatii CaD3]
          Length = 190

 Score =  224 bits (570), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 90/147 (61%), Positives = 113/147 (76%), Gaps = 1/147 (0%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           IT+   LVTSVD ++ WAR  SL  M FGLACCA+EMM  +   YDLERFG  PR+SPRQ
Sbjct: 8   ITNHNVLVTSVDNVLNWARLSSLWPMGFGLACCAIEMMATNASNYDLERFGIFPRSSPRQ 67

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVP 151
           SD+M+VAGT+T KMA  + R+Y+QMPEPRYV+SMGSC+N GG Y    Y V++G DRI+P
Sbjct: 68  SDLMLVAGTVTMKMAERVIRLYEQMPEPRYVLSMGSCSNSGGPYWEHGYHVLKGVDRIIP 127

Query: 152 VDIYVPGCPPTAEALIYGILLLQKKIR 178
           VD+YVPGCPP  E+LI G++ +Q+ IR
Sbjct: 128 VDVYVPGCPPRPESLIGGLMKVQELIR 154


>gi|325996536|gb|ADZ51941.1| NADH-ubiquinone oxidoreductase chain B [Helicobacter pylori 2018]
 gi|325998125|gb|ADZ50333.1| NADH-ubiquinone oxidoreductase chain B [Helicobacter pylori 2017]
          Length = 159

 Score =  224 bits (570), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 85/147 (57%), Positives = 113/147 (76%), Gaps = 1/147 (0%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
            +++++D+L+ W R+ SL  +T+GLACCA+EMM     R+D +RFG   RASPRQSDVMI
Sbjct: 6   VILSTLDKLLNWGRSNSLWPLTYGLACCAIEMMATGGSRFDFDRFGTIFRASPRQSDVMI 65

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           +AGTLT K A  +RR+YDQMPEP++VISMGSCAN GG ++ +Y+ V+G DRIVPVDIY+P
Sbjct: 66  IAGTLTKKHAEFMRRLYDQMPEPKWVISMGSCANTGGMFN-TYATVQGADRIVPVDIYLP 124

Query: 158 GCPPTAEALIYGILLLQKKIRRVGNVK 184
           GC P  E L Y +++LQ KIRR   +K
Sbjct: 125 GCAPRPETLQYALMVLQDKIRRSKAIK 151


>gi|295136982|ref|YP_003587528.1| NADH dehydrogenase subunit K [Pisum sativum]
 gi|293338554|gb|ADE43527.1| NADH dehydrogenase subunit K [Pisum sativum]
          Length = 227

 Score =  224 bits (570), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 70/154 (45%), Positives = 104/154 (67%), Gaps = 1/154 (0%)

Query: 28  RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
            +  + T    + T+++ L  W+R  SL  + +G +CC +E       R+D +R+G  PR
Sbjct: 7   PLLDQKTKNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66

Query: 88  ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146
           +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG 
Sbjct: 67  SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126

Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           D+++PVD+Y+PGCPP  EA+I  I  L+KKI R 
Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 160


>gi|255007685|ref|ZP_05279811.1| NADH-quinone oxidoreductase chain B [Bacteroides fragilis 3_1_12]
          Length = 196

 Score =  224 bits (570), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 75/160 (46%), Positives = 107/160 (66%), Gaps = 3/160 (1%)

Query: 22  VDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDL 79
            +    ++  E+   G    V  +D L+ W R+ SL  +TF  +CC +E M     RYD+
Sbjct: 19  DNESLEKMVKELNEGGANVFVGVLDDLINWGRSNSLWPLTFATSCCGIEFMALGAARYDM 78

Query: 80  ERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY 138
            RFGF   RASPRQ+D+++V GT+TNKMA  L+R+YDQM +P+YVI++G CA  GG +  
Sbjct: 79  ARFGFEVARASPRQADMIMVCGTITNKMAPVLKRLYDQMADPKYVIAVGGCAVSGGPFRK 138

Query: 139 SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           SY VV G D+I+PVD+Y+PGCPP  EA  YG++ LQ+K++
Sbjct: 139 SYHVVNGVDKILPVDVYIPGCPPRPEAFYYGMMQLQRKVK 178


>gi|15612247|ref|NP_223900.1| NADH dehydrogenase subunit B [Helicobacter pylori J99]
 gi|81625872|sp|Q9ZJW6|NUOB_HELPJ RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|4155792|gb|AAD06768.1| NADH oxidoreductase I [Helicobacter pylori J99]
 gi|308064039|gb|ADO05926.1| NADH dehydrogenase subunit B [Helicobacter pylori Sat464]
          Length = 159

 Score =  224 bits (570), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 84/147 (57%), Positives = 113/147 (76%), Gaps = 1/147 (0%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
            +++++D+L+ W R+ SL  +T+GLACCA+EMM     R+D +RFG   RASPRQSDVMI
Sbjct: 6   VILSTLDKLLNWGRSNSLWPLTYGLACCAIEMMATGGSRFDFDRFGTIFRASPRQSDVMI 65

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           +AGTLT K A  +RR+YDQMPEP++VISMGSCAN GG ++ +Y+ V+G DR+VPVDIY+P
Sbjct: 66  IAGTLTKKHAEFMRRLYDQMPEPKWVISMGSCANTGGMFN-TYATVQGADRVVPVDIYLP 124

Query: 158 GCPPTAEALIYGILLLQKKIRRVGNVK 184
           GC P  E L Y +++LQ KIRR   +K
Sbjct: 125 GCAPRPETLQYALMVLQDKIRRSKAIK 151


>gi|238065051|sp|B3ET80|NUOB_AMOA5 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
          Length = 160

 Score =  224 bits (570), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 93/154 (60%), Positives = 115/154 (74%), Gaps = 1/154 (0%)

Query: 26  FSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA 85
              IS++    G ++ +++ L+ WA   SL  +TFGLACCA+EMM A    YDL+R G  
Sbjct: 1   MDTISNKTGEGGVIMVALEDLLNWAERSSLWPITFGLACCAIEMMGAYASHYDLDRLGVI 60

Query: 86  PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVR 144
           PR SPRQ+DVMIV+GT+T KMA ++RR+YDQMPEPRYVISMGSCAN GG Y    Y VV+
Sbjct: 61  PRNSPRQADVMIVSGTVTFKMADSIRRLYDQMPEPRYVISMGSCANCGGPYWQHGYHVVK 120

Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           G DRI+PVD+YVPGCPP  EALI GIL LQ+KI+
Sbjct: 121 GVDRIIPVDVYVPGCPPRPEALIGGILKLQEKIK 154


>gi|284928645|ref|YP_003421167.1| NADH dehydrogenase subunit B [cyanobacterium UCYN-A]
 gi|284809104|gb|ADB94809.1| NADH dehydrogenase subunit B [cyanobacterium UCYN-A]
          Length = 247

 Score =  223 bits (569), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 73/180 (40%), Positives = 113/180 (62%), Gaps = 5/180 (2%)

Query: 6   VNQKIISGQSSCSLEKVDADFSRIS----SEITHKGFLVTSVDQLVTWARTGSLMWMTFG 61
           +NQ +    S+    + +   + IS    ++   +  ++T+VD L  WAR  SL  + +G
Sbjct: 1   MNQNLTPDLSTIEQSQKEKVLNPISPGNITQDLSENIILTTVDDLHNWARLSSLWPLLYG 60

Query: 62  LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPR 121
            ACC +E       R+D +RFG  PR SPRQ+D+++VAGT+T KMA AL R+Y++MP P+
Sbjct: 61  TACCFIEFAALIGSRFDFDRFGLVPRCSPRQADLLLVAGTVTMKMAPALVRLYEEMPSPK 120

Query: 122 YVISMGSCANGGGYY-HYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           YVI+MG+C   GG +   S + VRG D+++PVD+Y+PGCPP  EA+   ++ L+KK+   
Sbjct: 121 YVIAMGACTITGGMFSRDSTTTVRGVDKLIPVDVYIPGCPPRPEAIFDAVIKLRKKVSNE 180


>gi|109946844|ref|YP_664072.1| NADH dehydrogenase subunit B [Helicobacter acinonychis str. Sheeba]
 gi|122973434|sp|Q17Z53|NUOB_HELAH RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|109714065|emb|CAJ99073.1| NADH dehydrogenase I chain B [Helicobacter acinonychis str. Sheeba]
 gi|317011461|gb|ADU85208.1| NADH dehydrogenase subunit B [Helicobacter pylori SouthAfrica7]
          Length = 159

 Score =  223 bits (569), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 84/147 (57%), Positives = 113/147 (76%), Gaps = 1/147 (0%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
            +++++D+L+ W R+ SL  +T+GLACCA+EMM     R+D +RFG   RASPRQSDVMI
Sbjct: 6   VVLSTLDKLLNWGRSNSLWPLTYGLACCAIEMMATGGSRFDFDRFGTIFRASPRQSDVMI 65

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           +AGTLT K A  +RR+YDQMPEP++VISMGSCAN GG ++ +Y+ V+G DRI+PVDIY+P
Sbjct: 66  IAGTLTKKHAEFMRRLYDQMPEPKWVISMGSCANTGGMFN-TYATVQGADRIIPVDIYLP 124

Query: 158 GCPPTAEALIYGILLLQKKIRRVGNVK 184
           GC P  E L Y +++LQ KIRR   +K
Sbjct: 125 GCAPRPETLQYALMVLQDKIRRSKAIK 151


>gi|73921507|sp|O98679|NDHK_PEA RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
 gi|4138389|emb|CAA06191.1| NADH-plastoquinone oxidoreductase subunit, NdhK [Pisum sativum]
          Length = 227

 Score =  223 bits (569), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 70/154 (45%), Positives = 104/154 (67%), Gaps = 1/154 (0%)

Query: 28  RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
            +  + T    + T+++ L  W+R  SL  + +G +CC +E       R+D +R+G  PR
Sbjct: 7   PLLDQKTKNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66

Query: 88  ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146
           +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG 
Sbjct: 67  SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126

Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           D+++PVD+Y+PGCPP  EA+I  I  L+KKI R 
Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 160


>gi|322378681|ref|ZP_08053114.1| Donor-ubiquinone reductase I [Helicobacter suis HS1]
 gi|322380176|ref|ZP_08054411.1| NADH dehydrogenase subunit B [Helicobacter suis HS5]
 gi|321147391|gb|EFX42056.1| NADH dehydrogenase subunit B [Helicobacter suis HS5]
 gi|321148898|gb|EFX43365.1| Donor-ubiquinone reductase I [Helicobacter suis HS1]
          Length = 196

 Score =  223 bits (569), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 83/146 (56%), Positives = 110/146 (75%), Gaps = 1/146 (0%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
             ++S+D+L+ W R+ SL  +T+GLACCA+EMM     R+D +RFG   RASPRQSDVMI
Sbjct: 43  IALSSLDRLLNWGRSNSLWPLTYGLACCAIEMMATGGSRFDFDRFGTIFRASPRQSDVMI 102

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           +AGTLT K A   RR+YDQMPEP++VISMGSCAN GG ++ +Y+ V+G DR++PVDIY+P
Sbjct: 103 IAGTLTKKHAEFTRRLYDQMPEPKWVISMGSCANTGGMFN-TYATVQGVDRVIPVDIYLP 161

Query: 158 GCPPTAEALIYGILLLQKKIRRVGNV 183
           GC P  E L Y +++LQ KIRR   +
Sbjct: 162 GCAPRPETLQYALMVLQDKIRRQKAL 187


>gi|330850634|ref|YP_004376515.1| NADH-plastoquinone oxidoreductase subunit K [Ptilidium
           pulcherrimum]
 gi|302024763|gb|ADK89609.1| NADH-plastoquinone oxidoreductase subunit K [Ptilidium
           pulcherrimum]
          Length = 250

 Score =  223 bits (569), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 73/160 (45%), Positives = 107/160 (66%), Gaps = 2/160 (1%)

Query: 22  VDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLER 81
            D +FS  +  +T    ++T+ +    WAR  SL  + +G +CC +E       R+D +R
Sbjct: 24  SDIEFSLFNKTVTD-SIILTTFNDFSNWARLSSLWPLLYGTSCCFIEFASLIGSRFDFDR 82

Query: 82  FGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSY 140
           +G  PR+SPRQ+D++I AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SY
Sbjct: 83  YGLVPRSSPRQADLIITAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSY 142

Query: 141 SVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           + VRG D+++PVDIY+PGCPP  EA+I  I  L+KKI + 
Sbjct: 143 TTVRGVDKLIPVDIYLPGCPPKPEAIIDAITKLRKKIAQE 182


>gi|5139325|emb|CAB45640.1| NDH-K protein [Nostoc sp. PCC 7120]
          Length = 245

 Score =  223 bits (569), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 73/173 (42%), Positives = 110/173 (63%), Gaps = 4/173 (2%)

Query: 6   VNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACC 65
           +N  + +      +  ++       ++   +  ++T+VD L  WAR  SL  + FG ACC
Sbjct: 3   LNSDLTTQDKERIINPIERP---TITQDLSENVILTTVDDLYNWARLSSLWPLLFGTACC 59

Query: 66  AVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVIS 125
            +E       R+D +RFG  PR+SPRQ+D++I AGT+T KMA  L R+Y+QMPEP+YVI+
Sbjct: 60  FIEFAALIGSRFDFDRFGLIPRSSPRQADLIITAGTITMKMAPQLVRLYEQMPEPKYVIA 119

Query: 126 MGSCANGGGYYH-YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
           MG+C   GG +   S + VRG D+++PVD+Y+PGCPP  EA+I  ++ L+KKI
Sbjct: 120 MGACTITGGMFSVDSPTAVRGVDKLIPVDVYLPGCPPRPEAIIDAMIKLRKKI 172


>gi|57234306|ref|YP_181649.1| proton-translocating NADH-quinone oxidoreductase, B subunit
           [Dehalococcoides ethenogenes 195]
 gi|123618656|sp|Q3Z800|NUOB_DEHE1 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|57224754|gb|AAW39811.1| proton-translocating NADH-quinone oxidoreductase, B subunit
           [Dehalococcoides ethenogenes 195]
          Length = 200

 Score =  223 bits (569), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 86/177 (48%), Positives = 117/177 (66%), Gaps = 1/177 (0%)

Query: 9   KIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVE 68
            II    +            ++SE    G  VTSV++++ W+R  SL  + FGLACCA+E
Sbjct: 23  GIIQSFRTGHTTPYPDPADWLNSEEPPPGVFVTSVEKVLNWSRHYSLWPVMFGLACCAIE 82

Query: 69  MMQASMPRYDLERFGF-APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMG 127
           MM  +  R+DL RFG    RASPRQ+D+MIVAGTLT KMA  L+R+YDQMPEP++V++MG
Sbjct: 83  MMCMAASRWDLARFGMDIFRASPRQADLMIVAGTLTWKMAPWLKRIYDQMPEPKWVLAMG 142

Query: 128 SCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           +C   GG +  SYSVV G + +VPVD+YVPGCPP  EAL+  I+ + +KI +   +K
Sbjct: 143 ACGTSGGLFRDSYSVVPGFNMVVPVDVYVPGCPPRPEALLRAIMDIHEKIDKTRIIK 199


>gi|289065093|ref|YP_003433979.1| NADH-plastoquinone oxidoreductase subunit K [Typha latifolia]
 gi|281371776|gb|ADA63703.1| NADH-plastoquinone oxidoreductase subunit K [Typha latifolia]
          Length = 255

 Score =  223 bits (569), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 76/182 (41%), Positives = 111/182 (60%), Gaps = 2/182 (1%)

Query: 1   MGLTTVNQKIISGQSSCSLEKVDADFS-RISSEITHKGFLVTSVDQLVTWARTGSLMWMT 59
           M LT  +      +    +E V       +  E T    + T+ + L  W+R  SL  + 
Sbjct: 1   MVLTEYSDNKKKKEGKDYIETVMNLIEFPLLDETTPNSVISTTSNDLSNWSRLSSLWPLL 60

Query: 60  FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119
           +G +CC +E       R+D +R+G  PR+SPRQ+D+++ AGT+T KMA +L R+Y+QMPE
Sbjct: 61  YGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPE 120

Query: 120 PRYVISMGSCANGGGYYH-YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           P+YVI+MG+C   GG +   SYS VRG D+++PVD+Y+PGCPP  EA+I  I  L+KKI 
Sbjct: 121 PKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKKIS 180

Query: 179 RV 180
           R 
Sbjct: 181 RE 182


>gi|126695655|ref|YP_001090541.1| NADH dehydrogenase subunit B [Prochlorococcus marinus str. MIT
           9301]
 gi|218527916|sp|A3PB15|NDHK_PROM0 RecName: Full=NAD(P)H-quinone oxidoreductase subunit K; AltName:
           Full=NAD(P)H dehydrogenase I subunit K; AltName:
           Full=NDH-1 subunit K; Short=NDH-K
 gi|126542698|gb|ABO16940.1| putative respiratory-chain NADH dehydrogenase subunit
           [Prochlorococcus marinus str. MIT 9301]
          Length = 244

 Score =  223 bits (569), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 71/152 (46%), Positives = 104/152 (68%), Gaps = 1/152 (0%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
             +  ++TS+D L  WAR  SL  + +G ACC +E       R+D +RFG  PR+SPRQ+
Sbjct: 30  LSENIILTSLDDLHNWARLSSLWPLLYGTACCFIEFAALIGSRFDFDRFGLVPRSSPRQA 89

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGCDRIVPV 152
           D++IVAGT+T KMA AL R+Y+QMPEP+YVI+MG+C   GG +   S + VRG D+++PV
Sbjct: 90  DLLIVAGTVTMKMAPALVRLYEQMPEPKYVIAMGACTITGGMFSADSTTAVRGVDKLIPV 149

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           D+Y+PGCPP  EA+   ++ L+KK+     ++
Sbjct: 150 DLYLPGCPPRPEAIFDAVIKLRKKVGNESILE 181


>gi|290489714|gb|ADD31241.1| NADH-plastoquinone oxidoreductase subunit K protein [Lonicera
           japonica]
          Length = 247

 Score =  223 bits (569), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 73/165 (44%), Positives = 108/165 (65%), Gaps = 5/165 (3%)

Query: 21  KVDADFSRIS----SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPR 76
           K+D   + I      + T    + T+++ L  W+R  SL  + +G +CC +E       R
Sbjct: 18  KIDTVMNSIEFPLLDQTTQNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSR 77

Query: 77  YDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY 136
           +D +R+G  PR+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +
Sbjct: 78  FDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMF 137

Query: 137 H-YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
              SYS VRG D+++PVD+Y+PGCPP  EA+I  I  L+KKI R 
Sbjct: 138 STDSYSTVRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 182


>gi|260885204|ref|ZP_05734514.2| NADH dehydrogenase I subunit B [Prevotella tannerae ATCC 51259]
 gi|260853160|gb|EEX73029.1| NADH dehydrogenase I subunit B [Prevotella tannerae ATCC 51259]
          Length = 214

 Score =  223 bits (569), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 74/164 (45%), Positives = 111/164 (67%), Gaps = 3/164 (1%)

Query: 21  KVDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78
           K +  + ++ +E+   G   +V  +D L+ W R+ SL  +TF  +CC +E M     RYD
Sbjct: 19  KDNETYEKLVAELNANGANVIVKPLDDLINWGRSNSLWPLTFATSCCGIEFMAVCAARYD 78

Query: 79  LERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137
           + RFGF   R SPRQ+DV++V+GT+TNKMA  L+R+YDQM +P+YV+++G CA  GG + 
Sbjct: 79  IARFGFEVTRNSPRQADVILVSGTITNKMAPVLKRLYDQMADPKYVVAIGGCATTGGPFV 138

Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
            SY VV+G D I+PV++YVPGCPP  EA +YG++ LQ+ ++   
Sbjct: 139 KSYHVVKGVDEIIPVNVYVPGCPPRPEAFLYGMMQLQRIVKAEN 182


>gi|53717370|ref|YP_105287.1| NADH dehydrogenase subunit B [Burkholderia mallei ATCC 23344]
 gi|53720672|ref|YP_109658.1| NADH dehydrogenase subunit B [Burkholderia pseudomallei K96243]
 gi|67640239|ref|ZP_00439053.1| NADH-quinone oxidoreductase chain b (nadh dehydrogenasei, chain b)
           (ndh-1, chain b) [Burkholderia mallei GB8 horse 4]
 gi|134283174|ref|ZP_01769875.1| putative NADH-quinone oxidoreductase, B subunit [Burkholderia
           pseudomallei 305]
 gi|167004154|ref|ZP_02269924.1| NADH-quinone oxidoreductase, B subunit [Burkholderia mallei PRL-20]
 gi|167721386|ref|ZP_02404622.1| NADH dehydrogenase subunit B [Burkholderia pseudomallei DM98]
 gi|167847462|ref|ZP_02472970.1| NADH dehydrogenase subunit B [Burkholderia pseudomallei B7210]
 gi|167904433|ref|ZP_02491638.1| NADH dehydrogenase subunit B [Burkholderia pseudomallei NCTC 13177]
 gi|242317299|ref|ZP_04816315.1| putative NADH-quinone oxidoreductase, B subunit [Burkholderia
           pseudomallei 1106b]
 gi|254175821|ref|ZP_04882480.1| NADH-quinone oxidoreductase, B subunit [Burkholderia mallei ATCC
           10399]
 gi|254198551|ref|ZP_04904972.1| putative NADH-quinone oxidoreductase, B subunit [Burkholderia
           pseudomallei S13]
 gi|254203254|ref|ZP_04909616.1| NADH-quinone oxidoreductase, B subunit [Burkholderia mallei FMH]
 gi|254208590|ref|ZP_04914939.1| NADH-quinone oxidoreductase, B subunit [Burkholderia mallei JHU]
 gi|81607694|sp|Q63QG0|NUOB2_BURPS RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName:
           Full=NADH dehydrogenase I subunit B 2; AltName:
           Full=NDH-1 subunit B 2
 gi|81684518|sp|Q62DE1|NUOB2_BURMA RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName:
           Full=NADH dehydrogenase I subunit B 2; AltName:
           Full=NDH-1 subunit B 2
 gi|218528073|sp|A1UWB1|NUOB2_BURMS RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName:
           Full=NADH dehydrogenase I subunit B 2; AltName:
           Full=NDH-1 subunit B 2
 gi|218528074|sp|A3NZQ8|NUOB2_BURP0 RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName:
           Full=NADH dehydrogenase I subunit B 2; AltName:
           Full=NDH-1 subunit B 2
 gi|218528076|sp|A3NE04|NUOB2_BURP6 RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName:
           Full=NADH dehydrogenase I subunit B 2; AltName:
           Full=NDH-1 subunit B 2
 gi|218528078|sp|A3MFR5|NUOB2_BURM7 RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName:
           Full=NADH dehydrogenase I subunit B 2; AltName:
           Full=NDH-1 subunit B 2
 gi|218528079|sp|A2RYJ4|NUOB2_BURM9 RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName:
           Full=NADH dehydrogenase I subunit B 2; AltName:
           Full=NDH-1 subunit B 2
 gi|52211086|emb|CAH37074.1| putative NADH dehydrogenase [Burkholderia pseudomallei K96243]
 gi|52423340|gb|AAU46910.1| NADH-quinone oxidoreductase, B subunit [Burkholderia mallei ATCC
           23344]
 gi|134245369|gb|EBA45462.1| putative NADH-quinone oxidoreductase, B subunit [Burkholderia
           pseudomallei 305]
 gi|147746299|gb|EDK53377.1| NADH-quinone oxidoreductase, B subunit [Burkholderia mallei FMH]
 gi|147751277|gb|EDK58345.1| NADH-quinone oxidoreductase, B subunit [Burkholderia mallei JHU]
 gi|160696864|gb|EDP86834.1| NADH-quinone oxidoreductase, B subunit [Burkholderia mallei ATCC
           10399]
 gi|169655291|gb|EDS87984.1| putative NADH-quinone oxidoreductase, B subunit [Burkholderia
           pseudomallei S13]
 gi|238520928|gb|EEP84384.1| NADH-quinone oxidoreductase chain b (nadh dehydrogenasei, chain b)
           (ndh-1, chain b) [Burkholderia mallei GB8 horse 4]
 gi|242140538|gb|EES26940.1| putative NADH-quinone oxidoreductase, B subunit [Burkholderia
           pseudomallei 1106b]
 gi|243060451|gb|EES42637.1| NADH-quinone oxidoreductase, B subunit [Burkholderia mallei PRL-20]
          Length = 167

 Score =  223 bits (569), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 107/151 (70%), Positives = 126/151 (83%)

Query: 32  EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPR 91
            +   GF+VT++D  +  A+  SL +MTFGLACCAVEMM A+  RYD++RFG  PRASPR
Sbjct: 7   TLEKDGFIVTTLDAAMAAAQKNSLWYMTFGLACCAVEMMHAAGARYDMDRFGMIPRASPR 66

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
           Q D+MIVAGTLTNKMA A+RRVYDQM EPRYV+SMGSCANGGGYYHYSYSVVRGCDRIVP
Sbjct: 67  QCDLMIVAGTLTNKMAPAMRRVYDQMAEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVP 126

Query: 152 VDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
           VD+YVPGCPPTAEAL+YG++ LQ+K+     
Sbjct: 127 VDVYVPGCPPTAEALVYGLMQLQRKVAERST 157


>gi|290489742|gb|ADD31255.1| NADH-plastoquinone oxidoreductase subunit K protein [Plumbago
           auriculata]
          Length = 285

 Score =  223 bits (569), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 73/172 (42%), Positives = 112/172 (65%), Gaps = 1/172 (0%)

Query: 7   NQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCA 66
           N K   G+++     +++    +   IT    + T+++ L  W+R  SL  + +G +CC 
Sbjct: 46  NNKQKKGKTNKIERVLNSIEFPLLDRITQNSVISTTLNDLSNWSRLSSLWPLLYGTSCCF 105

Query: 67  VEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISM 126
           +E       R+D +R+G  PR+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+M
Sbjct: 106 IEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAM 165

Query: 127 GSCANGGGYYH-YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
           G+C   GG +   SYS VRG D+++PVD+Y+PGCPP  EA+I  I  L+KKI
Sbjct: 166 GACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKKI 217


>gi|53712161|ref|YP_098153.1| NADH dehydrogenase subunit B [Bacteroides fragilis YCH46]
 gi|60680345|ref|YP_210489.1| NADH dehydrogenase subunit B [Bacteroides fragilis NCTC 9343]
 gi|253563801|ref|ZP_04841258.1| NADH dehydrogenase I [Bacteroides sp. 3_2_5]
 gi|265765492|ref|ZP_06093767.1| NADH dehydrogenase I [Bacteroides sp. 2_1_16]
 gi|81316585|sp|Q5LH49|NUOB_BACFN RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|81608667|sp|Q64Y07|NUOB_BACFR RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|52215026|dbj|BAD47619.1| NADH dehydrogenase I chain B [Bacteroides fragilis YCH46]
 gi|60491779|emb|CAH06537.1| NADH-quinone oxidoreductase chain B [Bacteroides fragilis NCTC
           9343]
 gi|251947577|gb|EES87859.1| NADH dehydrogenase I [Bacteroides sp. 3_2_5]
 gi|263254876|gb|EEZ26310.1| NADH dehydrogenase I [Bacteroides sp. 2_1_16]
 gi|301161878|emb|CBW21422.1| NADH-quinone oxidoreductase chain B [Bacteroides fragilis 638R]
          Length = 196

 Score =  223 bits (569), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 75/160 (46%), Positives = 107/160 (66%), Gaps = 3/160 (1%)

Query: 22  VDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDL 79
            +    ++  E+   G    V  +D L+ W R+ SL  +TF  +CC +E M     RYD+
Sbjct: 19  DNESLEKMVKELNEGGANVFVGVLDDLINWGRSNSLWPLTFATSCCGIEFMALGAARYDM 78

Query: 80  ERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY 138
            RFGF   RASPRQ+D+++V GT+TNKMA  L+R+YDQM +P+YVI++G CA  GG +  
Sbjct: 79  ARFGFEVARASPRQADMIMVCGTITNKMAPVLKRLYDQMADPKYVIAVGGCAVSGGPFRK 138

Query: 139 SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           SY VV G D+I+PVD+Y+PGCPP  EA  YG++ LQ+K++
Sbjct: 139 SYHVVNGVDKILPVDVYIPGCPPRPEAFYYGMMQLQRKVK 178


>gi|218527893|sp|Q85XC3|NDHK_HORVU RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
          Length = 225

 Score =  223 bits (569), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 68/154 (44%), Positives = 104/154 (67%), Gaps = 1/154 (0%)

Query: 28  RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
            +  + +    + T+++ L  W+R  SL  + +G +CC +E       R+D +R+G  PR
Sbjct: 7   PLLDQTSSNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66

Query: 88  ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146
           +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG 
Sbjct: 67  SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126

Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           D+++PVD+Y+PGCPP  EA+I  +  L+KKI R 
Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDALTKLRKKISRE 160


>gi|14423817|sp|Q9MUR0|NDHK_MESVI RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
 gi|7259539|gb|AAF43840.1|AF166114_52 subunit K of NADH-ubiquinone oxidoreductase [Mesostigma viride]
          Length = 247

 Score =  223 bits (569), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 71/174 (40%), Positives = 117/174 (67%), Gaps = 2/174 (1%)

Query: 12  SGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQ 71
           +  ++  L   + +  +++  ++++  ++T+++ L  WAR  SL  + +G +CC +E   
Sbjct: 13  NSDTNERLINYNIEKPQVTQNVSNQ-LILTTLNDLYNWARLSSLWPLLYGTSCCFIEFAC 71

Query: 72  ASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCAN 131
               R+D +RFG  PR SPRQ+D++I AGT+T KMA +L R+Y+QMPEP+YVI+MG+C  
Sbjct: 72  LLGSRFDFDRFGLVPRCSPRQADLIITAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTI 131

Query: 132 GGGYYH-YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
            GG +   SYS VRG D+++PVD+Y+PGCPP  EA+I  ++ L+KK+ +   V+
Sbjct: 132 TGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEAIIDAVIKLRKKVAQENLVE 185


>gi|325280124|ref|YP_004252666.1| NAD(P)H-quinone oxidoreductase subunit K [Odoribacter splanchnicus
           DSM 20712]
 gi|324311933|gb|ADY32486.1| NAD(P)H-quinone oxidoreductase subunit K [Odoribacter splanchnicus
           DSM 20712]
          Length = 201

 Score =  223 bits (569), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 80/171 (46%), Positives = 112/171 (65%), Gaps = 3/171 (1%)

Query: 11  ISGQSSCSLEKVDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVE 68
           +      S++  D   +    ++   G   +V  +D L+ W R+ S+  +TF  +CC +E
Sbjct: 1   MKQPKIKSMKYEDFKDNEYLEQLRANGTDIIVGCLDDLINWGRSNSVWPLTFATSCCGIE 60

Query: 69  MMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMG 127
            M     RYD  RFGF   RASPRQ+DV+IVAGT+  KMA  LRR+YDQM EP+YVI+MG
Sbjct: 61  FMAVGAARYDFARFGFEVTRASPRQADVIIVAGTIVYKMAPVLRRLYDQMAEPKYVIAMG 120

Query: 128 SCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
            CA  GG +  SY VV+G ++I+PVD+YVPGCPP  E+L+YG++ LQ+KI+
Sbjct: 121 GCAISGGPFKKSYHVVKGVNQILPVDVYVPGCPPRPESLLYGMMQLQRKIK 171


>gi|72383495|ref|YP_292850.1| NADH dehydrogenase subunit B [Prochlorococcus marinus str. NATL2A]
 gi|123621504|sp|Q46M05|NDHK_PROMT RecName: Full=NAD(P)H-quinone oxidoreductase subunit K; AltName:
           Full=NAD(P)H dehydrogenase I subunit K; AltName:
           Full=NDH-1 subunit K; Short=NDH-K
 gi|72003345|gb|AAZ59147.1| NADH dehydrogenase subunit B [Prochlorococcus marinus str. NATL2A]
          Length = 249

 Score =  223 bits (569), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 69/145 (47%), Positives = 102/145 (70%), Gaps = 1/145 (0%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
             +  ++TS++ L  WAR  SL  + +G ACC +E       R+D +RFG  PR+SPRQ+
Sbjct: 35  LSENIILTSLEDLHNWARLSSLWPLLYGTACCFIEFAALIGSRFDFDRFGLVPRSSPRQA 94

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGCDRIVPV 152
           D++IVAGT+T KMA AL R+Y+QMP+P+YVI+MG+C   GG +   S + VRG D+++PV
Sbjct: 95  DLLIVAGTVTMKMAPALVRLYEQMPDPKYVIAMGACTITGGMFSADSTTAVRGVDKLIPV 154

Query: 153 DIYVPGCPPTAEALIYGILLLQKKI 177
           D+Y+PGCPP  EA+   ++ L+KK+
Sbjct: 155 DLYLPGCPPRPEAIFDAVIKLRKKV 179


>gi|153012225|ref|YP_001381740.1| NADH-plastoquinone oxidoreductase subunit K [Medicago truncatula]
          Length = 235

 Score =  223 bits (569), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 70/154 (45%), Positives = 104/154 (67%), Gaps = 1/154 (0%)

Query: 28  RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
            +  + T    + T+++ L  W+R  SL  + +G +CC +E       R+D +R+G  PR
Sbjct: 15  PLLDQKTKNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 74

Query: 88  ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146
           +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG 
Sbjct: 75  SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 134

Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           D+++PVD+Y+PGCPP  EA+I  I  L+KKI R 
Sbjct: 135 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 168


>gi|156742064|ref|YP_001432193.1| NADH dehydrogenase subunit B [Roseiflexus castenholzii DSM 13941]
 gi|238065038|sp|A7NL05|NUOB2_ROSCS RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName:
           Full=NADH dehydrogenase I subunit B 2; AltName:
           Full=NDH-1 subunit B 2
 gi|156233392|gb|ABU58175.1| NADH-quinone oxidoreductase, B subunit [Roseiflexus castenholzii
           DSM 13941]
          Length = 268

 Score =  223 bits (568), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 82/164 (50%), Positives = 116/164 (70%), Gaps = 3/164 (1%)

Query: 24  ADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFG 83
           +D   I  E   +G  +T++ +   W R  S+  ++FGLACCA+EMM   + R+DL RFG
Sbjct: 2   SDDRDIQLEAEKQGVFLTTMQRFYNWGRRSSVWPLSFGLACCAIEMMATGLARFDLARFG 61

Query: 84  FA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142
               RASPRQ+D+MIVAGT+T KMA  + R+Y+QMPEPRYVISMG+CA  GG +   Y+V
Sbjct: 62  AEMFRASPRQADLMIVAGTVTKKMAPQVVRLYNQMPEPRYVISMGACATSGGPFRDGYNV 121

Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI--RRVGNVK 184
           +RG D ++PVD+Y+PGCPP  EAL++ ++ LQK+I  +R+  V+
Sbjct: 122 LRGIDLLIPVDVYIPGCPPRPEALLHALMTLQKQIDAQRLNRVR 165


>gi|208435155|ref|YP_002266821.1| NADH-ubiquinone oxidoreductase chain B [Helicobacter pylori G27]
 gi|210135420|ref|YP_002301859.1| NADH dehydrogenase subunit B [Helicobacter pylori P12]
 gi|217032322|ref|ZP_03437818.1| hypothetical protein HPB128_132g20 [Helicobacter pylori B128]
 gi|254779804|ref|YP_003057910.1| NADH dehydrogenase subunit B [Helicobacter pylori B38]
 gi|298735715|ref|YP_003728240.1| NADH dehydrogenase I subunit B [Helicobacter pylori B8]
 gi|308183371|ref|YP_003927498.1| NADH dehydrogenase subunit B [Helicobacter pylori PeCan4]
 gi|308185009|ref|YP_003929142.1| NADH dehydrogenase subunit B [Helicobacter pylori SJM180]
 gi|238065158|sp|B6JNA1|NUOB_HELP2 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|238065159|sp|B5Z8Q6|NUOB_HELPG RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|208433084|gb|ACI27955.1| NADH-ubiquinone oxidoreductase chain B [Helicobacter pylori G27]
 gi|210133388|gb|ACJ08379.1| NADH-ubiquinone oxidoreductase chain B [Helicobacter pylori P12]
 gi|216945988|gb|EEC24602.1| hypothetical protein HPB128_132g20 [Helicobacter pylori B128]
 gi|254001716|emb|CAX29947.1| NADH-ubiquinone oxidoreductase, NQO6 subunit [Helicobacter pylori
           B38]
 gi|261838584|gb|ACX98350.1| NADH-ubiquinone oxidoreductase chain B [Helicobacter pylori 51]
 gi|261839979|gb|ACX99744.1| NADH dehydrogenase subunit B [Helicobacter pylori 52]
 gi|298354904|emb|CBI65776.1| NADH dehydrogenase I chain B [Helicobacter pylori B8]
 gi|308060929|gb|ADO02825.1| NADH dehydrogenase subunit B [Helicobacter pylori SJM180]
 gi|308065556|gb|ADO07448.1| NADH dehydrogenase subunit B [Helicobacter pylori PeCan4]
 gi|317013049|gb|ADU83657.1| NADH dehydrogenase subunit B [Helicobacter pylori Lithuania75]
 gi|317014652|gb|ADU82088.1| NADH dehydrogenase subunit B [Helicobacter pylori Gambia94/24]
          Length = 159

 Score =  223 bits (568), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 85/147 (57%), Positives = 113/147 (76%), Gaps = 1/147 (0%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
            +++++D+L+ W R+ SL  +T+GLACCA+EMM     R+D +RFG   RASPRQSDVMI
Sbjct: 6   VVLSTLDKLLNWGRSNSLWPLTYGLACCAIEMMATGGSRFDFDRFGTIFRASPRQSDVMI 65

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           +AGTLT K A  +RR+YDQMPEP++VISMGSCAN GG ++ +Y+ V+G DRIVPVDIY+P
Sbjct: 66  IAGTLTKKHAEFMRRLYDQMPEPKWVISMGSCANTGGMFN-TYATVQGADRIVPVDIYLP 124

Query: 158 GCPPTAEALIYGILLLQKKIRRVGNVK 184
           GC P  E L Y +++LQ KIRR   +K
Sbjct: 125 GCAPRPETLQYALMVLQDKIRRSKAIK 151


>gi|296274502|ref|YP_003657133.1| NADH-quinone oxidoreductase subunit B [Arcobacter nitrofigilis DSM
           7299]
 gi|296098676|gb|ADG94626.1| NADH-quinone oxidoreductase, B subunit [Arcobacter nitrofigilis DSM
           7299]
          Length = 169

 Score =  223 bits (568), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 82/145 (56%), Positives = 113/145 (77%), Gaps = 1/145 (0%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
             +++VD++V + R+ SL  +T+GLACCA+EMM +   RYD +RFG   RASPRQ+DV+I
Sbjct: 16  IALSTVDKIVNFGRSNSLWPLTYGLACCAIEMMASGASRYDFDRFGTIFRASPRQADVLI 75

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGTLT K A  +RR+YDQMP+P++VISMGSCAN GG ++ +Y+ V+G DR++PVDIY+P
Sbjct: 76  VAGTLTKKHAEYMRRLYDQMPDPKWVISMGSCANTGGMFN-TYATVQGVDRVIPVDIYLP 134

Query: 158 GCPPTAEALIYGILLLQKKIRRVGN 182
           GC P  E L Y +++LQKKIRR  +
Sbjct: 135 GCAPRPETLQYALMMLQKKIRRESS 159


>gi|15645875|ref|NP_208053.1| NADH dehydrogenase subunit B [Helicobacter pylori 26695]
 gi|108563630|ref|YP_627946.1| NADH dehydrogenase subunit B [Helicobacter pylori HPAG1]
 gi|188528050|ref|YP_001910737.1| NADH dehydrogenase subunit B [Helicobacter pylori Shi470]
 gi|207091614|ref|ZP_03239401.1| NADH dehydrogenase subunit B [Helicobacter pylori HPKX_438_AG0C1]
 gi|207108182|ref|ZP_03242344.1| NADH dehydrogenase subunit B [Helicobacter pylori HPKX_438_CA4C1]
 gi|217033582|ref|ZP_03439010.1| hypothetical protein HP9810_899g18 [Helicobacter pylori 98-10]
 gi|81555857|sp|O25851|NUOB_HELPY RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|123073732|sp|Q1CS00|NUOB_HELPH RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|238065160|sp|B2UV25|NUOB_HELPS RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|2314428|gb|AAD08307.1| NADH-ubiquinone oxidoreductase, NQO6 subunit (NQO6) [Helicobacter
           pylori 26695]
 gi|107837403|gb|ABF85272.1| NADH-ubiquinone oxidoreductase chain B [Helicobacter pylori HPAG1]
 gi|188144290|gb|ACD48707.1| NADH dehydrogenase subunit B [Helicobacter pylori Shi470]
 gi|216943928|gb|EEC23362.1| hypothetical protein HP9810_899g18 [Helicobacter pylori 98-10]
 gi|297380441|gb|ADI35328.1| NADH-quinone oxidoreductase, B subunit [Helicobacter pylori v225d]
 gi|308062545|gb|ADO04433.1| NADH dehydrogenase subunit B [Helicobacter pylori Cuz20]
 gi|315587152|gb|ADU41533.1| NADH-quinone oxidoreductase subunit B [Helicobacter pylori 35A]
 gi|317009945|gb|ADU80525.1| NADH dehydrogenase subunit B [Helicobacter pylori India7]
 gi|317178004|dbj|BAJ55793.1| NADH dehydrogenase subunit B [Helicobacter pylori F16]
 gi|317178445|dbj|BAJ56233.1| NADH dehydrogenase subunit B [Helicobacter pylori F30]
 gi|317180987|dbj|BAJ58773.1| NADH dehydrogenase subunit B [Helicobacter pylori F32]
 gi|317182510|dbj|BAJ60294.1| NADH dehydrogenase subunit B [Helicobacter pylori F57]
 gi|332674064|gb|AEE70881.1| NADH-quinone oxidoreductase subunit B [Helicobacter pylori 83]
          Length = 159

 Score =  223 bits (568), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 84/147 (57%), Positives = 113/147 (76%), Gaps = 1/147 (0%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
            +++++D+L+ W R+ SL  +T+GLACCA+EMM     R+D +RFG   RASPRQSDVMI
Sbjct: 6   VVLSTLDKLLNWGRSNSLWPLTYGLACCAIEMMATGGSRFDFDRFGTIFRASPRQSDVMI 65

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           +AGTLT K A  +RR+YDQMPEP++VISMGSCAN GG ++ +Y+ V+G DR+VPVDIY+P
Sbjct: 66  IAGTLTKKHAEFMRRLYDQMPEPKWVISMGSCANTGGMFN-TYATVQGADRVVPVDIYLP 124

Query: 158 GCPPTAEALIYGILLLQKKIRRVGNVK 184
           GC P  E L Y +++LQ KIRR   +K
Sbjct: 125 GCAPRPETLQYALMVLQDKIRRSKAIK 151


>gi|124025086|ref|YP_001014202.1| NADH dehydrogenase subunit B [Prochlorococcus marinus str. NATL1A]
 gi|218527917|sp|A2C0C7|NDHK_PROM1 RecName: Full=NAD(P)H-quinone oxidoreductase subunit K; AltName:
           Full=NAD(P)H dehydrogenase I subunit K; AltName:
           Full=NDH-1 subunit K; Short=NDH-K
 gi|123960154|gb|ABM74937.1| putative respiratory-chain NADH dehydrogenase subunit
           [Prochlorococcus marinus str. NATL1A]
          Length = 249

 Score =  223 bits (568), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 69/145 (47%), Positives = 102/145 (70%), Gaps = 1/145 (0%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
             +  ++TS++ L  WAR  SL  + +G ACC +E       R+D +RFG  PR+SPRQ+
Sbjct: 35  LSENIILTSLEDLHNWARLSSLWPLLYGTACCFIEFAALIGSRFDFDRFGLVPRSSPRQA 94

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGCDRIVPV 152
           D++IVAGT+T KMA AL R+Y+QMP+P+YVI+MG+C   GG +   S + VRG D+++PV
Sbjct: 95  DLLIVAGTVTMKMAPALVRLYEQMPDPKYVIAMGACTITGGMFSADSTTAVRGVDKLIPV 154

Query: 153 DIYVPGCPPTAEALIYGILLLQKKI 177
           D+Y+PGCPP  EA+   ++ L+KK+
Sbjct: 155 DLYLPGCPPRPEAIFDAVIKLRKKV 179


>gi|91069905|gb|ABE10834.1| putative respiratory-chain NADH dehydrogenase subunit [uncultured
           Prochlorococcus marinus clone ASNC2150]
          Length = 244

 Score =  223 bits (568), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 71/152 (46%), Positives = 104/152 (68%), Gaps = 1/152 (0%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
             +  ++TS+D L  WAR  SL  + +G ACC +E       R+D +RFG  PR+SPRQ+
Sbjct: 30  LSENIILTSLDDLHNWARLSSLWPLLYGTACCFIEFAALIGSRFDFDRFGLVPRSSPRQA 89

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGCDRIVPV 152
           D++IVAGT+T KMA AL R+Y+QMPEP+YVI+MG+C   GG +   S + VRG D+++PV
Sbjct: 90  DLLIVAGTVTMKMAPALVRLYEQMPEPKYVIAMGACTITGGMFSADSTTAVRGVDKLIPV 149

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           D+Y+PGCPP  EA+   ++ L+KK+     ++
Sbjct: 150 DLYLPGCPPRPEAIFDAVIKLRKKVGNESILE 181


>gi|167391809|ref|YP_001671687.1| NADH dehydrogenase subunit K [Carica papaya]
 gi|218527885|sp|B1A939|NDHK_CARPA RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
 gi|166344136|gb|ABY86786.1| NADH-plastoquinone oxidoreductase subunit K [Carica papaya]
          Length = 225

 Score =  223 bits (568), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 70/154 (45%), Positives = 103/154 (66%), Gaps = 1/154 (0%)

Query: 28  RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
            +    T    + T+++ L  W+R  SL  + +G +CC +E       R+D +R+G  PR
Sbjct: 7   PLLDRTTQNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66

Query: 88  ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146
           +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG 
Sbjct: 67  SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126

Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           D+++PVD+Y+PGCPP  EA+I  I  L+KKI R 
Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 160


>gi|42795491|gb|AAS46058.1| NADH dehydrogenase subunit K [Oryza sativa Indica Group]
 gi|42795558|gb|AAS46124.1| NADH dehydrogenase subunit K [Oryza sativa Japonica Group]
 gi|42795622|gb|AAS46187.1| NADH dehydrogenase subunit K [Oryza sativa Japonica Group]
 gi|290790577|gb|ADD62837.1| NADH-plastoquinone oxidoreductase subunit K [Oryza sativa Japonica
           Group]
 gi|290790646|gb|ADD62905.1| NADH-plastoquinone oxidoreductase subunit K [Oryza meridionalis]
 gi|290790715|gb|ADD62973.1| NADH-plastoquinone oxidoreductase subunit K [Oryza australiensis]
          Length = 253

 Score =  223 bits (568), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 68/154 (44%), Positives = 103/154 (66%), Gaps = 1/154 (0%)

Query: 28  RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
            +  + +    + T++  L  W+R  SL  + +G +CC +E       R+D +R+G  PR
Sbjct: 35  PLLDQTSSNSVISTTLKDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 94

Query: 88  ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146
           +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG 
Sbjct: 95  SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 154

Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           D+++PVD+Y+PGCPP  EA+I  +  L+KKI R 
Sbjct: 155 DKLIPVDVYLPGCPPKPEAVIDALTKLRKKISRE 188


>gi|154795223|ref|YP_052753.2| NADH dehydrogenase subunit K [Oryza nivara]
 gi|154795235|ref|YP_654218.2| NADH dehydrogenase subunit K [Oryza sativa Indica Group]
 gi|218511705|sp|Q6ENH0|NDHK_ORYNI RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
 gi|218511706|sp|P0C341|NDHK_ORYSA RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
 gi|218511707|sp|P0C342|NDHK_ORYSI RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
 gi|218511708|sp|P0C343|NDHK_ORYSJ RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
 gi|20146751|gb|AAM12487.1|AC074232_14 PSII G protein 5'-partial [Oryza sativa Japonica Group]
          Length = 225

 Score =  223 bits (568), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 68/154 (44%), Positives = 103/154 (66%), Gaps = 1/154 (0%)

Query: 28  RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
            +  + +    + T++  L  W+R  SL  + +G +CC +E       R+D +R+G  PR
Sbjct: 7   PLLDQTSSNSVISTTLKDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66

Query: 88  ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146
           +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG 
Sbjct: 67  SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126

Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           D+++PVD+Y+PGCPP  EA+I  +  L+KKI R 
Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDALTKLRKKISRE 160


>gi|49614999|dbj|BAD26782.1| NADH dehydrogenase subunit K [Oryza nivara]
          Length = 246

 Score =  223 bits (568), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 68/154 (44%), Positives = 103/154 (66%), Gaps = 1/154 (0%)

Query: 28  RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
            +  + +    + T++  L  W+R  SL  + +G +CC +E       R+D +R+G  PR
Sbjct: 28  PLLDQTSSNSVISTTLKDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 87

Query: 88  ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146
           +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG 
Sbjct: 88  SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 147

Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           D+++PVD+Y+PGCPP  EA+I  +  L+KKI R 
Sbjct: 148 DKLIPVDVYLPGCPPKPEAVIDALTKLRKKISRE 181


>gi|124360833|gb|ABN08805.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit [Medicago
           truncatula]
          Length = 227

 Score =  223 bits (568), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 70/154 (45%), Positives = 104/154 (67%), Gaps = 1/154 (0%)

Query: 28  RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
            +  + T    + T+++ L  W+R  SL  + +G +CC +E       R+D +R+G  PR
Sbjct: 7   PLLDQKTKNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66

Query: 88  ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146
           +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG 
Sbjct: 67  SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126

Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           D+++PVD+Y+PGCPP  EA+I  I  L+KKI R 
Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 160


>gi|218512130|sp|P06670|NDHK_MAIZE RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
          Length = 227

 Score =  223 bits (568), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 68/154 (44%), Positives = 104/154 (67%), Gaps = 1/154 (0%)

Query: 28  RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
            +  + +    + T+++ L  W+R  SL  + +G +CC +E       R+D +R+G  PR
Sbjct: 7   PLLDQTSSNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66

Query: 88  ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146
           +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG 
Sbjct: 67  SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126

Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           D+++PVD+Y+PGCPP  EA+I  +  L+KKI R 
Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDALTKLRKKIARE 160


>gi|218440674|ref|YP_002379003.1| NADH dehydrogenase subunit B [Cyanothece sp. PCC 7424]
 gi|238065002|sp|B7KJ51|NDHK_CYAP7 RecName: Full=NAD(P)H-quinone oxidoreductase subunit K; AltName:
           Full=NAD(P)H dehydrogenase I subunit K; AltName:
           Full=NDH-1 subunit K; Short=NDH-K
 gi|218173402|gb|ACK72135.1| NADH-quinone oxidoreductase, B subunit [Cyanothece sp. PCC 7424]
          Length = 247

 Score =  223 bits (568), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 75/176 (42%), Positives = 115/176 (65%), Gaps = 4/176 (2%)

Query: 3   LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62
           LT+ +      Q    L  ++   S+++ +++    ++T+VD L  WAR  SL  + +G 
Sbjct: 5   LTSSSDLFTQEQKEKLLNPINH--SQVTQDLSE-NVILTTVDDLYNWARLSSLWPLLYGT 61

Query: 63  ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122
           ACC +E       R+D +RFG  PR+SPRQ+D++I AGT+T KMA AL R+Y+QMP+P+Y
Sbjct: 62  ACCFIEFAALIGSRFDFDRFGLVPRSSPRQADLIITAGTITMKMAPALVRLYEQMPDPKY 121

Query: 123 VISMGSCANGGGYY-HYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
           VI+MG+C   GG +   S + VRG D+++PVD+Y+PGCPP  EA+   I+ L+KK+
Sbjct: 122 VIAMGACTITGGMFSSDSTTAVRGVDKLIPVDVYIPGCPPRPEAIFDAIVKLRKKV 177


>gi|237752491|ref|ZP_04582971.1| NADH dehydrogenase subunit B [Helicobacter winghamensis ATCC
           BAA-430]
 gi|229375980|gb|EEO26071.1| NADH dehydrogenase subunit B [Helicobacter winghamensis ATCC
           BAA-430]
          Length = 176

 Score =  222 bits (567), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 86/147 (58%), Positives = 112/147 (76%), Gaps = 1/147 (0%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
             +TSVD+L+ W R+ SL  MT+GLACCA+EMM     RYD +RFG   RASPRQSDVMI
Sbjct: 23  IALTSVDKLLNWGRSNSLWAMTYGLACCAIEMMATGASRYDFDRFGTIFRASPRQSDVMI 82

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           +AGT+T K A  +RR+YDQMPEP++VISMGSCAN GG ++ +Y+ V+G DRI+PVDIY+P
Sbjct: 83  IAGTVTKKHAQFVRRLYDQMPEPKWVISMGSCANTGGMFN-TYATVQGVDRIIPVDIYLP 141

Query: 158 GCPPTAEALIYGILLLQKKIRRVGNVK 184
           GC P  E L Y +++LQ+KIR+    +
Sbjct: 142 GCSPRPETLQYALMVLQQKIRKQKASR 168


>gi|218129269|ref|ZP_03458073.1| hypothetical protein BACEGG_00846 [Bacteroides eggerthii DSM 20697]
 gi|317475241|ref|ZP_07934508.1| NADH-quinone oxidoreductase [Bacteroides eggerthii 1_2_48FAA]
 gi|217988647|gb|EEC54967.1| hypothetical protein BACEGG_00846 [Bacteroides eggerthii DSM 20697]
 gi|316908694|gb|EFV30381.1| NADH-quinone oxidoreductase [Bacteroides eggerthii 1_2_48FAA]
          Length = 194

 Score =  222 bits (567), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 74/160 (46%), Positives = 106/160 (66%), Gaps = 3/160 (1%)

Query: 22  VDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDL 79
            +    ++  E+   G    +  +D  V W R+ SL  +TF  +CC +E M     RYD+
Sbjct: 19  DNETLEKLVRELNAGGANVALGVLDDFVNWGRSNSLWPLTFATSCCGIEFMALGAARYDM 78

Query: 80  ERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY 138
            RFGF   RASPRQ+D+++V GT+TNKMA  L+R+YDQM +P+YVI++G CA  GG +  
Sbjct: 79  ARFGFEVARASPRQADMIMVCGTITNKMAPVLKRLYDQMADPKYVIAVGGCAVSGGPFKK 138

Query: 139 SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           SY VV G D+I+PVD+Y+PGCPP  EA  YG++ LQ+K++
Sbjct: 139 SYHVVNGVDKILPVDVYIPGCPPRPEAFYYGMMQLQRKVK 178


>gi|154795251|ref|YP_001001538.2| NADH-plastoquinone oxidoreductase subunit K [Nuphar advena]
 gi|218527955|sp|A1XFV9|NDHK_NUPAD RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
          Length = 225

 Score =  222 bits (567), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 69/149 (46%), Positives = 102/149 (68%), Gaps = 1/149 (0%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
            T    + T+++ L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPRQ
Sbjct: 12  TTPNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQ 71

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGCDRIVP 151
           +D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++P
Sbjct: 72  ADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIP 131

Query: 152 VDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           VD+Y+PGCPP  EA+I  I  L+KK+ R 
Sbjct: 132 VDVYLPGCPPKPEAIIDAITKLRKKVSRE 160


>gi|197294100|ref|YP_002149721.1| NADH-plastoquinone oxidoreductase subunit K [Cicer arietinum]
 gi|197089788|gb|ACH41058.1| NADH-plastoquinone oxidoreductase subunit K [Cicer arietinum]
          Length = 227

 Score =  222 bits (567), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 70/154 (45%), Positives = 104/154 (67%), Gaps = 1/154 (0%)

Query: 28  RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
            +  + T    + T+++ L  W+R  SL  + +G +CC +E       R+D +R+G  PR
Sbjct: 7   PVLDQKTKNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66

Query: 88  ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146
           +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG 
Sbjct: 67  SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126

Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           D+++PVD+Y+PGCPP  EA+I  I  L+KKI R 
Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 160


>gi|152990038|ref|YP_001355760.1| NADH dehydrogenase subunit B [Nitratiruptor sp. SB155-2]
 gi|238065184|sp|A6Q1P4|NUOB_NITSB RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|151421899|dbj|BAF69403.1| NADH-quinone oxidoreductase, chain B [Nitratiruptor sp. SB155-2]
          Length = 169

 Score =  222 bits (567), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 87/147 (59%), Positives = 112/147 (76%), Gaps = 1/147 (0%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
             +T+VD+LV W RT SL  +T+GLACCA+EMM +   RYD +RFG   RASPRQSDVMI
Sbjct: 16  VALTTVDKLVNWGRTNSLWVLTYGLACCAIEMMASGASRYDFDRFGVIFRASPRQSDVMI 75

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGTLT K A  +RR+YDQM EP++VISMGSCAN GG ++ +Y+ V+G DR++PVDIY+P
Sbjct: 76  VAGTLTKKHAEFIRRLYDQMAEPKWVISMGSCANTGGMFN-TYATVQGVDRVIPVDIYLP 134

Query: 158 GCPPTAEALIYGILLLQKKIRRVGNVK 184
           GC P  E L Y ++LLQKK+R+    +
Sbjct: 135 GCAPRPETLQYAVMLLQKKLRKRSIFQ 161


>gi|110598466|ref|ZP_01386737.1| NADH-quinone oxidoreductase, B subunit [Chlorobium ferrooxidans DSM
           13031]
 gi|110339916|gb|EAT58420.1| NADH-quinone oxidoreductase, B subunit [Chlorobium ferrooxidans DSM
           13031]
          Length = 189

 Score =  222 bits (567), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 90/147 (61%), Positives = 112/147 (76%), Gaps = 1/147 (0%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           IT    LVTSVD ++ WAR  S+  M FGLACCA+EMM  +   YDLERFG  PR+SPRQ
Sbjct: 8   ITKHNVLVTSVDNVLNWARLSSIWPMGFGLACCAIEMMATNASNYDLERFGIFPRSSPRQ 67

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVP 151
           SD+MIVAGT+T KMA  + R+Y+QMPEPRYV+SMGSC+N GG Y    Y V++G DR++P
Sbjct: 68  SDLMIVAGTVTMKMAERVVRLYEQMPEPRYVLSMGSCSNCGGPYWEHGYHVLKGVDRVIP 127

Query: 152 VDIYVPGCPPTAEALIYGILLLQKKIR 178
           VD+YVPGCPP  EALI G++ +Q+ IR
Sbjct: 128 VDVYVPGCPPRPEALIGGLMKIQELIR 154


>gi|270308195|ref|YP_003330253.1| NADH-quinone oxidoreductase, B subunit [Dehalococcoides sp. VS]
 gi|270154087|gb|ACZ61925.1| NADH-quinone oxidoreductase, B subunit [Dehalococcoides sp. VS]
          Length = 200

 Score =  222 bits (567), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 84/177 (47%), Positives = 117/177 (66%), Gaps = 1/177 (0%)

Query: 9   KIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVE 68
            +I    +            +S + +  G  +TSV++++ W+R  SL  + FGLACCA+E
Sbjct: 23  GVIQSFRTEHTSPYPDPTDWLSGDESPPGVFITSVEKVLNWSRHYSLWPVMFGLACCAIE 82

Query: 69  MMQASMPRYDLERFGF-APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMG 127
           MM  +  R+DL RFG    RASPRQ+D+MIVAGTLT KMA  LRR+YDQMPEP++V++MG
Sbjct: 83  MMCMAASRWDLARFGMDIFRASPRQADLMIVAGTLTWKMAPWLRRIYDQMPEPKWVLAMG 142

Query: 128 SCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           +C   GG +  SYSVV G + +VPVD+YVPGCPP  EAL+  I+ + +KI +   +K
Sbjct: 143 ACGTSGGLFRDSYSVVPGFNLVVPVDVYVPGCPPRPEALMRAIMDIHEKIDKTRIIK 199


>gi|297625190|ref|YP_003706624.1| NADH-quinone oxidoreductase subunit B [Truepera radiovictrix DSM
           17093]
 gi|297166370|gb|ADI16081.1| NADH-quinone oxidoreductase, B subunit [Truepera radiovictrix DSM
           17093]
          Length = 178

 Score =  222 bits (567), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 85/154 (55%), Positives = 118/154 (76%), Gaps = 2/154 (1%)

Query: 26  FSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA 85
           F +   E+ ++G L +++ +LV W R+ SL   TFGLACCA+EMMQ++  R+DL RFG  
Sbjct: 7   FEKDVQELENEGILFSTLSKLVAWGRSNSLWPATFGLACCAIEMMQSTNARHDLSRFGSE 66

Query: 86  -PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR 144
             RASPRQ+DVMIVAG L+ KMA  +RRVYDQMP+P++VISMG+CA+ GG ++  Y++V+
Sbjct: 67  VFRASPRQADVMIVAGRLSKKMAPVMRRVYDQMPDPKWVISMGACASSGGMFNN-YAIVQ 125

Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
             D +VPVD++VPGCPP  EAL+Y ++ LQKK+R
Sbjct: 126 NVDSVVPVDVFVPGCPPRPEALVYAVMQLQKKVR 159


>gi|154795257|ref|YP_784477.2| NADH-plastoquinone oxidoreductase subunit K [Piper cenocladum]
 gi|218527951|sp|Q06GQ6|NDHK_PIPCE RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
          Length = 229

 Score =  222 bits (567), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 68/154 (44%), Positives = 103/154 (66%), Gaps = 1/154 (0%)

Query: 28  RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
            +    T    + T+++ L  W+R  SL  + +G +CC +E       R+D +R+G  PR
Sbjct: 7   PLLDRTTQSSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66

Query: 88  ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146
           +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG 
Sbjct: 67  SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126

Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           D+++PVD+Y+PGCPP  EA++  I  L+KK+ R 
Sbjct: 127 DKLIPVDVYLPGCPPKPEAILDAITKLRKKVSRE 160


>gi|50250331|emb|CAF28597.1| photosystem II G protein [Nymphaea alba]
          Length = 253

 Score =  222 bits (567), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 69/149 (46%), Positives = 102/149 (68%), Gaps = 1/149 (0%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
            T    + T+++ L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPRQ
Sbjct: 40  TTPNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQ 99

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGCDRIVP 151
           +D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++P
Sbjct: 100 ADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIP 159

Query: 152 VDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           VD+Y+PGCPP  EA+I  I  L+KK+ R 
Sbjct: 160 VDVYLPGCPPKPEAIIDAITKLRKKVSRE 188


>gi|194132108|gb|ACF33362.1| NADH-plastoquinone oxidoreductase subunit K [Gonystylus bancanus]
          Length = 229

 Score =  222 bits (567), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 71/148 (47%), Positives = 103/148 (69%), Gaps = 1/148 (0%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
           TH   + T+++ L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPRQ+
Sbjct: 13  THNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 72

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGCDRIVPV 152
           D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++PV
Sbjct: 73  DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 132

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRV 180
           D+Y+PGCPP  EA+I  I  L+KKI R 
Sbjct: 133 DVYLPGCPPKPEAVIDAITKLRKKISRE 160


>gi|283794972|ref|YP_003359363.1| photosystem II G protein [Olea europaea]
 gi|330850747|ref|YP_004376425.1| photosystem II protein G [Olea europaea subsp. europaea]
 gi|281428691|gb|ADA69930.1| photosystem II G protein [Olea europaea]
 gi|291059257|gb|ADD72093.1| NADH-plastoquinone oxidoreductase subunit K [Olea europaea]
 gi|328795437|emb|CBR30319.1| photosystem II protein G [Olea europaea subsp. europaea]
          Length = 225

 Score =  222 bits (567), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 69/154 (44%), Positives = 103/154 (66%), Gaps = 1/154 (0%)

Query: 28  RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
            +  +      + T+++ L  W+R  SL  + +G +CC +E       R+D +R+G  PR
Sbjct: 7   PLLDQTVQNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66

Query: 88  ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146
           +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG 
Sbjct: 67  SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126

Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           D+++PVD+Y+PGCPP  EA+I  I  L+KKI R 
Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 160


>gi|159902860|ref|YP_001550204.1| NADH dehydrogenase subunit B [Prochlorococcus marinus str. MIT
           9211]
 gi|218527920|sp|A9BDU0|NDHK_PROM4 RecName: Full=NAD(P)H-quinone oxidoreductase subunit K; AltName:
           Full=NAD(P)H dehydrogenase I subunit K; AltName:
           Full=NDH-1 subunit K; Short=NDH-K
 gi|159888036|gb|ABX08250.1| putative respiratory-chain NADH dehydrogenase subunit
           [Prochlorococcus marinus str. MIT 9211]
          Length = 252

 Score =  222 bits (567), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 71/152 (46%), Positives = 107/152 (70%), Gaps = 2/152 (1%)

Query: 27  SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP 86
             +++E++    ++TS+D L  WAR  SL  + +G ACC +E       R+D +RFG  P
Sbjct: 37  PNVTNELSE-NIILTSLDDLHNWARLSSLWPLLYGTACCFIEFAALIGSRFDFDRFGLVP 95

Query: 87  RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRG 145
           R+SPRQ+D++IVAGT+T KMA AL R+Y+QMP+P+YVI+MG+C   GG +   S + VRG
Sbjct: 96  RSSPRQADLLIVAGTVTMKMAPALVRLYEQMPDPKYVIAMGACTITGGMFSADSTTAVRG 155

Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
            D+++PVD+Y+PGCPP  EA+   ++ L+KK+
Sbjct: 156 VDKLIPVDLYLPGCPPRPEAIFDAVIKLRKKV 187


>gi|154795231|ref|YP_053159.2| NADH dehydrogenase subunit K [Nymphaea alba]
 gi|218527956|sp|Q6EW44|NDHK_NYMAL RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
          Length = 225

 Score =  222 bits (567), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 69/149 (46%), Positives = 102/149 (68%), Gaps = 1/149 (0%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
            T    + T+++ L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPRQ
Sbjct: 12  TTPNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQ 71

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGCDRIVP 151
           +D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++P
Sbjct: 72  ADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIP 131

Query: 152 VDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           VD+Y+PGCPP  EA+I  I  L+KK+ R 
Sbjct: 132 VDVYLPGCPPKPEAIIDAITKLRKKVSRE 160


>gi|57864900|gb|AAW57074.1| NADH dehydrogenase subunit K [cyanobacterium endosymbiont of
           Rhopalodia gibba]
          Length = 281

 Score =  222 bits (566), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 76/180 (42%), Positives = 115/180 (63%), Gaps = 3/180 (1%)

Query: 2   GLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFG 61
             TT++   I  Q    +    A  S+++ +++    ++T+VD L  WAR  SL  + +G
Sbjct: 34  PNTTLDLAAIEQQQKEKILNPIAR-SQVTQDLSE-NVILTTVDDLHNWARLSSLWPLLYG 91

Query: 62  LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPR 121
            ACC +E       R+D +RFG  PR+SPRQ+D++I AGT+T KMA AL R+Y+QMP+P+
Sbjct: 92  TACCFIEFAALIGSRFDFDRFGLVPRSSPRQADLIITAGTITMKMAPALVRLYEQMPDPK 151

Query: 122 YVISMGSCANGGGYY-HYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           YVI+MG+C   GG +   S + VRG D+++PVD+Y+PGCPP  EA+   I+ L+KK+   
Sbjct: 152 YVIAMGACTITGGMFSSDSTTAVRGVDKLIPVDVYIPGCPPRPEAIFDAIIKLRKKVSNE 211


>gi|22652005|gb|AAN03554.1|AF381040_4 NADH dehydrogenase subunit K [Synechococcus sp. PCC 7002]
          Length = 241

 Score =  222 bits (566), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 72/155 (46%), Positives = 109/155 (70%), Gaps = 2/155 (1%)

Query: 27  SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP 86
           S+++ +++    ++T+VD L  WAR  SL  + +G ACC +E       R+D +RFG  P
Sbjct: 21  SQVTQDLSE-NVILTTVDDLYNWARLSSLWPLLYGTACCFIEFAALLGSRFDFDRFGLVP 79

Query: 87  RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRG 145
           R+SPRQ+D+++VAGT+T KMA AL R+Y++MPEP+YVI+MG+C   GG +   S + VRG
Sbjct: 80  RSSPRQADLILVAGTVTMKMAPALVRLYEEMPEPKYVIAMGACTITGGMFSSDSTTAVRG 139

Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
            D+++PVD+Y+PGCPP  EA+I  I+ L+KK+   
Sbjct: 140 VDKLIPVDLYIPGCPPRPEAIIDAIIKLRKKVSNE 174


>gi|313202843|ref|YP_004041500.1| NADH dehydrogenase subunit b [Paludibacter propionicigenes WB4]
 gi|312442159|gb|ADQ78515.1| NADH dehydrogenase subunit B [Paludibacter propionicigenes WB4]
          Length = 194

 Score =  222 bits (566), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 75/179 (41%), Positives = 115/179 (64%), Gaps = 3/179 (1%)

Query: 1   MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTF 60
           M L  +N K I        E ++     +  E      +++ +D+L+ W R+ S+  + +
Sbjct: 8   MELKNINIKGIPTAEFNDNEYLENYIKEL--EANGVNVVLSKIDELINWGRSNSVWPLIY 65

Query: 61  GLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119
             +CC +E M ++   +D+ RFG    R SPRQ+D+MIVAGT+ +KMA  ++RVYDQM E
Sbjct: 66  ATSCCGIEFMASAAAHHDISRFGMEVTRNSPRQADLMIVAGTMVHKMAPLIKRVYDQMAE 125

Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           P+YV++MG+CA  GG +  SY VV G D+I+PVD+Y+PGCPP  E+L YG++ LQ+KI+
Sbjct: 126 PKYVVAMGACAISGGPFVNSYHVVPGVDQIIPVDVYIPGCPPRPESLFYGLMQLQRKIK 184


>gi|325104079|ref|YP_004273733.1| NADH dehydrogenase subunit B [Pedobacter saltans DSM 12145]
 gi|324972927|gb|ADY51911.1| NADH dehydrogenase subunit B [Pedobacter saltans DSM 12145]
          Length = 161

 Score =  222 bits (566), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 82/153 (53%), Positives = 112/153 (73%), Gaps = 1/153 (0%)

Query: 29  ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88
           +  ++ + G +VT +D L+ W+R  SL  ++FGLACCA+EMM +    +D +R G  PR 
Sbjct: 3   LEKQLENGGLIVTKLDDLLNWSRLSSLWPLSFGLACCAIEMMGSYSSNFDFDRLGVFPRP 62

Query: 89  SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCD 147
           SPRQ+DV+I+AGT+T KMA  ++R+Y+QMPEP+YVISMGSC+N GG Y    Y VV+G D
Sbjct: 63  SPRQADVIIIAGTVTFKMAERIKRLYEQMPEPKYVISMGSCSNCGGPYWEHGYHVVKGVD 122

Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           RI+PVD+YV GCPP  EALI  I+ LQ+KI + 
Sbjct: 123 RIIPVDVYVQGCPPRPEALIGAIIELQQKIEKE 155


>gi|282897133|ref|ZP_06305135.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit [Raphidiopsis
           brookii D9]
 gi|281197785|gb|EFA72679.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit [Raphidiopsis
           brookii D9]
          Length = 244

 Score =  222 bits (566), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 73/151 (48%), Positives = 102/151 (67%), Gaps = 1/151 (0%)

Query: 28  RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
              ++   +  ++T+VD L  WAR  SL  + FG ACC +E       R+D +RFG  PR
Sbjct: 22  PTVTQELSENVILTTVDDLYNWARLSSLWPLLFGTACCFIEFAALIGSRFDFDRFGLIPR 81

Query: 88  ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146
           +SPRQ+D++I AGT+T KM   L R+Y+QMPEP+YVI+MG+C   GG +   S S VRG 
Sbjct: 82  SSPRQADLLITAGTITMKMGPQLVRLYEQMPEPKYVIAMGACTITGGMFSVDSPSAVRGV 141

Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
           D+++PVD+Y+PGCPP  EA+I  I+ L+KKI
Sbjct: 142 DKLIPVDVYLPGCPPRPEAIIDAIIKLRKKI 172


>gi|110456608|gb|ABG74735.1| NADH dehydrogenase 32 kDa subunit [Forsythia europaea]
          Length = 225

 Score =  222 bits (566), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 69/154 (44%), Positives = 103/154 (66%), Gaps = 1/154 (0%)

Query: 28  RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
            +  +      + T+++ L  W+R  SL  + +G +CC +E       R+D +R+G  PR
Sbjct: 7   PLLDQTVQNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66

Query: 88  ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146
           +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG 
Sbjct: 67  SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126

Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           D+++PVD+Y+PGCPP  EA+I  I  L+KKI R 
Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 160


>gi|29337233|sp|Q31791|NDHK_ANTFO RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
 gi|29122638|dbj|BAC55353.2| NADH dehydrogenase 27 kDa subunit [Anthoceros formosae]
          Length = 247

 Score =  222 bits (566), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 72/159 (45%), Positives = 106/159 (66%), Gaps = 1/159 (0%)

Query: 27  SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP 86
           S +  E T    ++T+ +    WAR  SL  + +G +CC +E       R+D +R+G  P
Sbjct: 24  SSLPDETTSDSIILTTFNDFSNWARLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVP 83

Query: 87  RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRG 145
           R+SPRQ+D++I AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG
Sbjct: 84  RSSPRQADLIITAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRG 143

Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
            D+++PVDIY+PGCPP  EA+I  I+ L+K + R  + +
Sbjct: 144 VDKLIPVDIYLPGCPPKPEAIIDAIIKLRKGVAREVHER 182


>gi|27808002|dbj|BAC55447.1| NADH dehydrogenase 27 kDa subunit [Anthoceros formosae]
          Length = 247

 Score =  222 bits (566), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 72/159 (45%), Positives = 106/159 (66%), Gaps = 1/159 (0%)

Query: 27  SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP 86
           S +  E T    ++T+ +    WAR  SL  + +G +CC +E       R+D +R+G  P
Sbjct: 24  SSLPDETTSDSIILTTFNDFSNWARLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVP 83

Query: 87  RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRG 145
           R+SPRQ+D++I AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG
Sbjct: 84  RSSPRQADLIITAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRG 143

Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
            D+++PVDIY+PGCPP  EA+I  I+ L+K + R  + +
Sbjct: 144 VDKLIPVDIYLPGCPPKPEAIIDAIIKLRKGVAREVHER 182


>gi|154795236|ref|NP_039387.2| NADH dehydrogenase subunit K [Oryza sativa Japonica Group]
          Length = 225

 Score =  222 bits (566), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 68/154 (44%), Positives = 103/154 (66%), Gaps = 1/154 (0%)

Query: 28  RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
            +  + +    + T++  L  W+R  SL  + +G +CC +E       R+D +R+G  PR
Sbjct: 7   PLLDQRSSNSVISTTLKDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66

Query: 88  ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146
           +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG 
Sbjct: 67  SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126

Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           D+++PVD+Y+PGCPP  EA+I  +  L+KKI R 
Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDALTKLRKKISRE 160


>gi|11988|emb|CAA34000.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|226609|prf||1603356AF photosystem II G protein
          Length = 246

 Score =  222 bits (566), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 68/154 (44%), Positives = 103/154 (66%), Gaps = 1/154 (0%)

Query: 28  RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
            +  + +    + T++  L  W+R  SL  + +G +CC +E       R+D +R+G  PR
Sbjct: 28  PLLDQRSSNSVISTTLKDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 87

Query: 88  ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146
           +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG 
Sbjct: 88  SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 147

Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           D+++PVD+Y+PGCPP  EA+I  +  L+KKI R 
Sbjct: 148 DKLIPVDVYLPGCPPKPEAVIDALTKLRKKISRE 181


>gi|329962484|ref|ZP_08300484.1| putative NADH dehydrogenase I subunit B [Bacteroides fluxus YIT
           12057]
 gi|328530040|gb|EGF56928.1| putative NADH dehydrogenase I subunit B [Bacteroides fluxus YIT
           12057]
          Length = 196

 Score =  222 bits (566), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 74/160 (46%), Positives = 106/160 (66%), Gaps = 3/160 (1%)

Query: 22  VDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDL 79
            +    ++  E+   G    +  +D  V W R+ SL  +TF  +CC +E M     RYD+
Sbjct: 19  DNETLEKLVRELNAGGANVALGVLDDFVNWGRSNSLWPLTFATSCCGIEFMALGAARYDM 78

Query: 80  ERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY 138
            RFGF   RASPRQ+D+++V GT+TNKMA  L+R+YDQM +P+YVI++G CA  GG +  
Sbjct: 79  ARFGFEVARASPRQADMIMVCGTITNKMAPVLKRLYDQMADPKYVIAVGGCAVSGGPFKK 138

Query: 139 SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           SY VV G D+I+PVD+Y+PGCPP  EA  YG++ LQ+K++
Sbjct: 139 SYHVVNGVDKILPVDVYIPGCPPRPEAFYYGMMQLQRKVK 178


>gi|156573611|gb|ABU85141.1| NADH-plastoquinone oxidoreductase subunit K [Yucca schidigera]
          Length = 239

 Score =  222 bits (566), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 70/154 (45%), Positives = 103/154 (66%), Gaps = 1/154 (0%)

Query: 28  RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
            +  + T    + T+ + L  W+R  SL  + +G +CC +E       R+D +R+G  PR
Sbjct: 21  PLLDQTTPNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 80

Query: 88  ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146
           +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG 
Sbjct: 81  SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 140

Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           D+++PVD+Y+PGCPP  EA+I  I  L+KKI R 
Sbjct: 141 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 174


>gi|313199634|ref|YP_004021250.1| no product string in file [Isoetes flaccida]
 gi|291575363|gb|ADE18076.1| no product string in file [Isoetes flaccida]
          Length = 250

 Score =  222 bits (566), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 71/162 (43%), Positives = 108/162 (66%), Gaps = 1/162 (0%)

Query: 20  EKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDL 79
             +++  S +    T    ++T+ + L  WAR  SL  + +G +CC +E       R+D 
Sbjct: 20  PVINSIDSSLLDRTTPNSIVLTTFNDLSNWARLSSLWPLLYGTSCCFIEFASLIGSRFDF 79

Query: 80  ERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-Y 138
           +R+G  PR+SPRQ+D++I AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   
Sbjct: 80  DRYGLVPRSSPRQADLIITAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTD 139

Query: 139 SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           SYS VRG D+++PVD+Y+PGCPP  EA+I  I+ L+K++ R 
Sbjct: 140 SYSTVRGVDKLIPVDVYLPGCPPKPEAIIDAIVKLRKRVARE 181


>gi|160891170|ref|ZP_02072173.1| hypothetical protein BACUNI_03617 [Bacteroides uniformis ATCC 8492]
 gi|317481067|ref|ZP_07940146.1| NADH-quinone oxidoreductase [Bacteroides sp. 4_1_36]
 gi|156859391|gb|EDO52822.1| hypothetical protein BACUNI_03617 [Bacteroides uniformis ATCC 8492]
 gi|316902780|gb|EFV24655.1| NADH-quinone oxidoreductase [Bacteroides sp. 4_1_36]
          Length = 193

 Score =  222 bits (566), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 73/160 (45%), Positives = 106/160 (66%), Gaps = 3/160 (1%)

Query: 22  VDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDL 79
            +    ++  E+   G    +  +D  V W R+ SL  +TF  +CC +E M     RYD+
Sbjct: 19  DNETLEKLVRELNAGGANVALGVLDDFVNWGRSNSLWPLTFATSCCGIEFMALGAARYDM 78

Query: 80  ERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY 138
            RFGF   RASPRQ+D+++V GT+TNKMA  L+R+YDQM +P+YV+++G CA  GG +  
Sbjct: 79  ARFGFEVARASPRQADMIMVCGTITNKMAPVLKRLYDQMADPKYVVAVGGCAVSGGPFKK 138

Query: 139 SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           SY VV G D+I+PVD+Y+PGCPP  EA  YG++ LQ+K++
Sbjct: 139 SYHVVNGVDKILPVDVYIPGCPPRPEAFYYGMMQLQRKVK 178


>gi|123967853|ref|YP_001008711.1| NADH dehydrogenase subunit B [Prochlorococcus marinus str. AS9601]
 gi|218527922|sp|A2BP93|NDHK_PROMS RecName: Full=NAD(P)H-quinone oxidoreductase subunit K; AltName:
           Full=NAD(P)H dehydrogenase I subunit K; AltName:
           Full=NDH-1 subunit K; Short=NDH-K
 gi|123197963|gb|ABM69604.1| putative respiratory-chain NADH dehydrogenase subunit
           [Prochlorococcus marinus str. AS9601]
          Length = 244

 Score =  222 bits (566), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 71/152 (46%), Positives = 104/152 (68%), Gaps = 1/152 (0%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
             +  ++TS+D L  WAR  SL  + +G ACC +E       R+D +RFG  PR+SPRQ+
Sbjct: 30  LSENIILTSLDDLHNWARLSSLWPLLYGTACCFIEFAALIGSRFDFDRFGLVPRSSPRQA 89

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGCDRIVPV 152
           D++IVAGT+T KMA AL R+Y+QMPEP+YVI+MG+C   GG +   S + VRG D+++PV
Sbjct: 90  DLLIVAGTVTMKMAPALVRLYEQMPEPKYVIAMGACTITGGMFSADSTTAVRGVDKLIPV 149

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           D+Y+PGCPP  EA+   ++ L+KK+     ++
Sbjct: 150 DLYLPGCPPRPEAIFDAVIKLRKKVGNESILE 181


>gi|118430306|ref|YP_874740.1| NADH-plastoquinone oxidoreductase subunit K [Agrostis stolonifera]
 gi|118201215|gb|ABK79584.1| NADH-plastoquinone oxidoreductase subunit K [Agrostis stolonifera]
          Length = 245

 Score =  222 bits (566), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 75/181 (41%), Positives = 113/181 (62%), Gaps = 2/181 (1%)

Query: 1   MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTF 60
           M LT   +K   G+ S        +F  +  + +    + T+ + L  W+R  SL  + +
Sbjct: 1   MVLTEYLEKKKEGKDSIETVMNLIEFPLL-DQTSSNSVISTTPNDLSNWSRLSSLWPLLY 59

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           G +CC +E       R+D +R+G  PR+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP
Sbjct: 60  GTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEP 119

Query: 121 RYVISMGSCANGGGYYH-YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           +YVI+MG+C   GG +   SYS VRG D+++PVD+Y+PGCPP  EA+I  +  L+KKI R
Sbjct: 120 KYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEAVIDALTKLRKKISR 179

Query: 180 V 180
            
Sbjct: 180 E 180


>gi|9652180|gb|AAF91429.1|AF279902_1 NADH-ubiquinone oxidoreductase subunit PSST [Lupinus luteus]
          Length = 210

 Score =  222 bits (565), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 112/144 (77%), Positives = 122/144 (84%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           F+++ VD L+ WAR GS+  MTFGLACCAVEMM     RYDL+RFG   R SPRQSD MI
Sbjct: 59  FVISKVDDLMNWARRGSIWPMTFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDCMI 118

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSY VVRGCDRIVPVDIYVP
Sbjct: 119 VAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYYVVRGCDRIVPVDIYVP 178

Query: 158 GCPPTAEALIYGILLLQKKIRRVG 181
           GCPPTAEAL+YG+L LQKKI R  
Sbjct: 179 GCPPTAEALLYGLLQLQKKINRRK 202


>gi|289066814|ref|YP_003434332.1| NADH-plastoquinone oxidoreductase subunit K [Vigna radiata]
 gi|259020001|gb|ACV90199.1| NADH-plastoquinone oxidoreductase subunit K [Vigna radiata]
          Length = 212

 Score =  222 bits (565), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 69/154 (44%), Positives = 103/154 (66%), Gaps = 1/154 (0%)

Query: 28  RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
            +  + T    + T+++    W+R  SL  + +G +CC +E       R+D +R+G  PR
Sbjct: 7   PLLDQTTKNSVISTTLNDFSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66

Query: 88  ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146
           +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG 
Sbjct: 67  SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126

Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           D+++PVD+Y+PGCPP  EA+I  I  L+KKI R 
Sbjct: 127 DKLIPVDVYLPGCPPKPEAIIDAITKLRKKISRE 160


>gi|119491043|ref|ZP_01623201.1| NADH dehydrogenase beta subunit [Lyngbya sp. PCC 8106]
 gi|119453588|gb|EAW34748.1| NADH dehydrogenase beta subunit [Lyngbya sp. PCC 8106]
          Length = 241

 Score =  222 bits (565), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 74/171 (43%), Positives = 113/171 (66%), Gaps = 4/171 (2%)

Query: 8   QKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAV 67
            + IS ++   +  ++    +++ E++    ++T+VD L  WAR  SL  + +G ACC +
Sbjct: 3   SQSISPETGKIINPIER--PQVTQELSE-NVVLTTVDDLYNWARLSSLWPLLYGTACCFI 59

Query: 68  EMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMG 127
           E       R+D +RFG  PR+SPRQ+D++I AGT+T K A  L R+Y+QMPEP+YVI+MG
Sbjct: 60  EFAALIGSRFDFDRFGLVPRSSPRQADLLITAGTITMKYAPVLVRLYEQMPEPKYVIAMG 119

Query: 128 SCANGGGYYH-YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
           +C   GG +   S + VRG D+++PVD+Y+PGCPP  EA+I  I+ L+KKI
Sbjct: 120 ACTITGGMFSMDSTTAVRGVDKLIPVDVYIPGCPPRPEAIIDAIIKLRKKI 170


>gi|183217745|ref|YP_001837364.1| NADH dehydrogenase subunit K [Guizotia abyssinica]
 gi|218527890|sp|B2LMJ7|NDHK_GUIAB RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
 gi|179366260|gb|ACB86531.1| NADH dehydrogenase subunit K [Guizotia abyssinica]
          Length = 225

 Score =  222 bits (565), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 70/149 (46%), Positives = 102/149 (68%), Gaps = 1/149 (0%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
            T    + T+++ L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPRQ
Sbjct: 12  TTQNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQ 71

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGCDRIVP 151
           +D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++P
Sbjct: 72  ADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIP 131

Query: 152 VDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           VD+Y+PGCPP  EA+I  I  L+KKI R 
Sbjct: 132 VDVYLPGCPPKPEAIIDAITKLRKKISRE 160


>gi|288801144|ref|ZP_06406600.1| NADH dehydrogenase I, B/C/D subunit protein [Prevotella sp. oral
           taxon 299 str. F0039]
 gi|288332078|gb|EFC70560.1| NADH dehydrogenase I, B/C/D subunit protein [Prevotella sp. oral
           taxon 299 str. F0039]
          Length = 210

 Score =  222 bits (565), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 78/161 (48%), Positives = 110/161 (68%), Gaps = 3/161 (1%)

Query: 21  KVDADFSRISSEITHKGF--LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78
           K +    +I+ E+   G   +  S+DQL+ W R+ SL  +TF  +CC +E M     RYD
Sbjct: 17  KDNETLEQIAQELHEGGVNVVTGSLDQLINWGRSNSLWSLTFATSCCGIEFMSVGCARYD 76

Query: 79  LERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137
             RFGF   R SPRQ+D+++ AGT+TNKMA   +R+YD+M EP+Y+I++G CA  GG + 
Sbjct: 77  FARFGFEVTRNSPRQADLIMCAGTITNKMAPVFKRLYDEMAEPKYIIAIGGCAISGGPFK 136

Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
            SY VVRG + IVPVD+YVPGCPP  EA++YG++ LQ+KI+
Sbjct: 137 ASYHVVRGINEIVPVDVYVPGCPPRPEAILYGMMQLQRKIK 177


>gi|170079340|ref|YP_001735978.1| NADH dehydrogenase subunit B [Synechococcus sp. PCC 7002]
 gi|218527931|sp|B1XMK4|NDHK_SYNP2 RecName: Full=NAD(P)H-quinone oxidoreductase subunit K; AltName:
           Full=NAD(P)H dehydrogenase I subunit K; AltName:
           Full=NDH-1 subunit K; Short=NDH-K
 gi|169887009|gb|ACB00723.1| NADH dehydrogenase subunit K [Synechococcus sp. PCC 7002]
          Length = 243

 Score =  222 bits (565), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 72/155 (46%), Positives = 109/155 (70%), Gaps = 2/155 (1%)

Query: 27  SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP 86
           S+++ +++    ++T+VD L  WAR  SL  + +G ACC +E       R+D +RFG  P
Sbjct: 23  SQVTQDLSE-NVILTTVDDLYNWARLSSLWPLLYGTACCFIEFAALLGSRFDFDRFGLVP 81

Query: 87  RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRG 145
           R+SPRQ+D+++VAGT+T KMA AL R+Y++MPEP+YVI+MG+C   GG +   S + VRG
Sbjct: 82  RSSPRQADLILVAGTVTMKMAPALVRLYEEMPEPKYVIAMGACTITGGMFSSDSTTAVRG 141

Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
            D+++PVD+Y+PGCPP  EA+I  I+ L+KK+   
Sbjct: 142 VDKLIPVDLYIPGCPPRPEAIIDAIIKLRKKVSNE 176


>gi|13518424|ref|NP_084784.1| NADH dehydrogenase subunit K [Lotus japonicus]
 gi|18202728|sp|Q9BBT7|NDHK_LOTJA RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
 gi|13358965|dbj|BAB33182.1| photosystem II G protein [Lotus japonicus]
          Length = 230

 Score =  222 bits (565), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 68/154 (44%), Positives = 103/154 (66%), Gaps = 1/154 (0%)

Query: 28  RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
            +    T    + T+++ L  W+R  SL  + +G +CC +E       R+D +R+G  PR
Sbjct: 7   PLIDRTTQNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66

Query: 88  ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146
           +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG 
Sbjct: 67  SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126

Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           D+++PVD+Y+PGCPP  E+++  I  L+KKI R 
Sbjct: 127 DKLIPVDVYLPGCPPKPESILDAITKLRKKISRE 160


>gi|290489720|gb|ADD31244.1| NADH-plastoquinone oxidoreductase subunit K protein [Nerium
           oleander]
          Length = 246

 Score =  222 bits (565), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 69/154 (44%), Positives = 103/154 (66%), Gaps = 1/154 (0%)

Query: 28  RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
            + +       + T+++ L  W+R  SL  + +G +CC +E       R+D +R+G  PR
Sbjct: 26  PLLNRTVQNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 85

Query: 88  ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146
           +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG 
Sbjct: 86  SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 145

Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           D+++PVD+Y+PGCPP  EA+I  I  L+KKI R 
Sbjct: 146 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 179


>gi|66876431|gb|AAY57993.1| NdhK [Operculina aequisepala]
          Length = 235

 Score =  222 bits (565), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 69/160 (43%), Positives = 105/160 (65%), Gaps = 1/160 (0%)

Query: 22  VDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLER 81
           +++    +         + T+++ L  W+R  SL  + +G +CC +E       R+D +R
Sbjct: 1   MNSIQFPLLDRTAKNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDR 60

Query: 82  FGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSY 140
           +G  PR+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SY
Sbjct: 61  YGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSY 120

Query: 141 SVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           S VRG D+++PVD+Y+PGCPP  EA+I  I  L+KKI R 
Sbjct: 121 STVRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 160


>gi|197359657|gb|ACH69871.1| NADH-plastoquinone oxidoreductase subunit K [Aneura sp. Wickett
           473]
          Length = 231

 Score =  222 bits (565), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 72/160 (45%), Positives = 106/160 (66%), Gaps = 2/160 (1%)

Query: 22  VDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLER 81
            D  F      +T    ++T+++    WAR  SL  + +G +CC +E       R+D +R
Sbjct: 2   NDTKFHPFDKTVTD-SIILTTLNDFSNWARLSSLWPLLYGTSCCFIEFASLIGSRFDFDR 60

Query: 82  FGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSY 140
           +G  PR+SPRQ+D++I AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SY
Sbjct: 61  YGLVPRSSPRQADLVITAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSY 120

Query: 141 SVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           + VRG D+++PVDIY+PGCPP  EA+I  ++ L+KKI R 
Sbjct: 121 TTVRGVDKLIPVDIYLPGCPPRPEAIIDAVIKLRKKIARE 160


>gi|14017576|ref|NP_114263.1| NADH dehydrogenase subunit K [Triticum aestivum]
 gi|556460|gb|AAA84731.1| thylakoid membrane protein [Triticum aestivum]
 gi|13928209|dbj|BAB47038.1| NADH dehydrogenase 27kDa subunit [Triticum aestivum]
          Length = 245

 Score =  222 bits (565), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 75/181 (41%), Positives = 112/181 (61%), Gaps = 2/181 (1%)

Query: 1   MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTF 60
           M LT    K   G+ S        +F  +  + +    + T+ + L  W+R  SL  + +
Sbjct: 1   MVLTEYLDKKKEGKDSIETVMNLIEFPLL-DQTSSNSVISTTPNDLSNWSRLSSLWPLLY 59

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           G +CC +E       R+D +R+G  PR+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP
Sbjct: 60  GTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEP 119

Query: 121 RYVISMGSCANGGGYYH-YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           +YVI+MG+C   GG +   SYS VRG D+++PVD+Y+PGCPP  EA+I  +  L+KKI R
Sbjct: 120 KYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEAVIDALTKLRKKISR 179

Query: 180 V 180
            
Sbjct: 180 E 180


>gi|139387440|ref|YP_001122794.1| NADH-plastoquinone oxidoreductase subunit K [Phaseolus vulgaris]
 gi|218527930|sp|A4GG93|NDHK_PHAVU RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
 gi|112030962|gb|ABH88074.1| NADH-plastoquinone oxidoreductase subunit K [Phaseolus vulgaris]
 gi|158187161|gb|ABW22794.1| NADH-plastoquinone oxidoreductase subunit K [Phaseolus vulgaris]
          Length = 212

 Score =  222 bits (565), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 69/154 (44%), Positives = 103/154 (66%), Gaps = 1/154 (0%)

Query: 28  RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
            +  + T    + T+++    W+R  SL  + +G +CC +E       R+D +R+G  PR
Sbjct: 7   PLLDQTTQNSVISTTLNDFSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66

Query: 88  ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146
           +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG 
Sbjct: 67  SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126

Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           D+++PVD+Y+PGCPP  EA+I  I  L+KKI R 
Sbjct: 127 DKLIPVDVYLPGCPPKPEAIIDAITKLRKKISRE 160


>gi|66876443|gb|AAY58001.1| NdhK [Falkia repens]
          Length = 235

 Score =  222 bits (565), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 69/154 (44%), Positives = 103/154 (66%), Gaps = 1/154 (0%)

Query: 28  RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
            +  +      + T+++ L  W+R  SL  + +G +CC +E       R+D +R+G  PR
Sbjct: 7   PLLDQTAKNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66

Query: 88  ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146
           +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG 
Sbjct: 67  SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126

Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           D+++PVD+Y+PGCPP  EA+I  I  L+KKI R 
Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 160


>gi|227536077|ref|ZP_03966126.1| NADH:ubiquinone oxidoreductase [Sphingobacterium spiritivorum ATCC
           33300]
 gi|227243974|gb|EEI93989.1| NADH:ubiquinone oxidoreductase [Sphingobacterium spiritivorum ATCC
           33300]
          Length = 167

 Score =  222 bits (565), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 87/153 (56%), Positives = 112/153 (73%), Gaps = 1/153 (0%)

Query: 29  ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88
           I +++ + G +V  +D L+ WAR  S+  ++FG+ACCA+EMM A    YDL+R G  PR 
Sbjct: 3   IENQLQNNGVVVAKLDDLLNWARLSSMWPVSFGIACCAIEMMGAMASTYDLDRLGVFPRP 62

Query: 89  SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCD 147
           SPRQSDVMI+AGT+T KMA  +R++Y+QMPEP+YVISMGSC+N GG Y    Y VV+G D
Sbjct: 63  SPRQSDVMIIAGTVTFKMADRIRKLYEQMPEPKYVISMGSCSNCGGPYWQHGYHVVKGVD 122

Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           RI+PVD+YV GCPP  EALI   L LQKKI + 
Sbjct: 123 RIIPVDVYVQGCPPRPEALIGAFLELQKKIEKE 155


>gi|301167766|emb|CBW27350.1| NADH dehydrogenase I chain B [Bacteriovorax marinus SJ]
          Length = 168

 Score =  222 bits (565), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 83/161 (51%), Positives = 108/161 (67%), Gaps = 2/161 (1%)

Query: 26  FSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF- 84
            ++    +     ++  +D    W R  SL  MTFGLACCA+EMM     +YDLERFG  
Sbjct: 1   MNKERKTLMQDSVVLMKLDDFFNWGRKNSLWPMTFGLACCAIEMMATGASKYDLERFGCG 60

Query: 85  APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVV 143
           A  A+PR++D+MIVAGT+T KMA  ++ +Y+QM EP+YVISMGSCAN GG Y    Y V+
Sbjct: 61  AFMATPRRADLMIVAGTVTLKMAPRIKTLYEQMAEPKYVISMGSCANKGGPYWQHGYHVL 120

Query: 144 RGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           +G D IVPVD+YVPGCPP  EALI G++ LQKKI     ++
Sbjct: 121 KGVDEIVPVDVYVPGCPPRPEALIEGLMTLQKKIANERLLR 161


>gi|56750378|ref|YP_171079.1| NADH dehydrogenase subunit B [Synechococcus elongatus PCC 6301]
 gi|81299990|ref|YP_400198.1| NADH dehydrogenase subunit B [Synechococcus elongatus PCC 7942]
 gi|81596704|sp|Q5N560|NDHK_SYNP6 RecName: Full=NAD(P)H-quinone oxidoreductase subunit K; AltName:
           Full=NAD(P)H dehydrogenase I subunit K; AltName:
           Full=NDH-1 subunit K; Short=NDH-K
 gi|123556951|sp|Q31P08|NDHK_SYNE7 RecName: Full=NAD(P)H-quinone oxidoreductase subunit K; AltName:
           Full=NAD(P)H dehydrogenase I subunit K; AltName:
           Full=NDH-1 subunit K; Short=NDH-K
 gi|56685337|dbj|BAD78559.1| NADH dehydrogenase subunit NdhK [Synechococcus elongatus PCC 6301]
 gi|81168871|gb|ABB57211.1| NADH-quinone oxidoreductase, B subunit [Synechococcus elongatus PCC
           7942]
          Length = 235

 Score =  222 bits (565), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 72/163 (44%), Positives = 106/163 (65%), Gaps = 1/163 (0%)

Query: 16  SCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMP 75
           +   E  +       ++   +  ++T++D L  WAR  SL  + +G ACC +E       
Sbjct: 4   TNPAEIRNPAAPPEITQGLSENVILTTLDDLYNWARLSSLWPLMYGTACCFIEFAALIGS 63

Query: 76  RYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY 135
           R+D +RFG  PR SPRQ+D++I AGT+T KMA AL R+Y+QMPEP+YVI+MG+C   GG 
Sbjct: 64  RFDFDRFGLVPRCSPRQADLLITAGTVTMKMAPALVRLYEQMPEPKYVIAMGACTITGGM 123

Query: 136 YH-YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
           +   S + VRG D+++PVD+Y+PGCPP  EA+I  I+ L+KK+
Sbjct: 124 FSADSTTTVRGVDKLLPVDVYIPGCPPRPEAIIDAIVKLRKKV 166


>gi|154795255|ref|NP_862758.2| NADH dehydrogenase subunit K [Calycanthus floridus var. glaucus]
 gi|218527905|sp|Q7YJW8|NDHK_CALFG RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
          Length = 225

 Score =  222 bits (565), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 69/160 (43%), Positives = 106/160 (66%), Gaps = 1/160 (0%)

Query: 22  VDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLER 81
           +++    +    T    + T+++ L  W+R  SL  + +G +CC +E       R+D +R
Sbjct: 1   MNSTEFPLLDRTTQNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDR 60

Query: 82  FGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSY 140
           +G  PR+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SY
Sbjct: 61  YGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSY 120

Query: 141 SVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           S VRG D+++PVD+Y+PGCPP  EA+I  I  L+KK+ R 
Sbjct: 121 STVRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKKVSRE 160


>gi|66876438|gb|AAY57998.1| NdhK [Jacquemontia tamnifolia]
          Length = 224

 Score =  222 bits (565), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 68/151 (45%), Positives = 101/151 (66%), Gaps = 1/151 (0%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP 90
            +      + T++  L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SP
Sbjct: 10  DQTAKNSVISTTLTDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSP 69

Query: 91  RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGCDRI 149
           RQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D++
Sbjct: 70  RQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKL 129

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           +PVD+Y+PGCPP  EA++  I  L+KKI R 
Sbjct: 130 IPVDVYLPGCPPKPEAILDAITKLRKKISRE 160


>gi|1709406|sp|P52766|NDHK_LUPLU RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
 gi|881443|gb|AAB86906.1| NADH-ubiquinone oxidoreductase subunit [Lupinus luteus]
          Length = 226

 Score =  222 bits (565), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 69/154 (44%), Positives = 104/154 (67%), Gaps = 1/154 (0%)

Query: 28  RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
            +    T    + T++++L  W+R  SL  + +G +CC +E       R+D +R+G  PR
Sbjct: 7   PLRDRTTQNSVISTTLNELSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66

Query: 88  ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146
           +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI++G+C   GG +   SYS VRG 
Sbjct: 67  SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAIGACTITGGMFSTDSYSTVRGV 126

Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           D+++PVD+Y+PGCPP  EA+I  I  L+KKI R 
Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 160


>gi|290489722|gb|ADD31245.1| NADH-plastoquinone oxidoreductase subunit K protein [Rhododendron
           simsii]
          Length = 225

 Score =  222 bits (565), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 71/154 (46%), Positives = 104/154 (67%), Gaps = 1/154 (0%)

Query: 28  RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
            +   IT    + T+++ L  W+R  SL  + +G +CC +E       R+D +R+G  PR
Sbjct: 7   PVLDRITQNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66

Query: 88  ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146
           +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG 
Sbjct: 67  SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126

Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           D+++PVD+Y+PGCPP  EA+I  I  L+KKI R 
Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 160


>gi|83774873|dbj|BAE64996.1| unnamed protein product [Aspergillus oryzae]
          Length = 176

 Score =  222 bits (565), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 104/146 (71%), Positives = 122/146 (83%)

Query: 39  LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIV 98
           ++T+ DQL+ WAR GSL  +TF LACC +EMM  SMPRYD +R G   RASPRQ+DVMIV
Sbjct: 26  ILTTTDQLINWARQGSLWPLTFALACCGIEMMHVSMPRYDQDRLGIIFRASPRQADVMIV 85

Query: 99  AGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPG 158
           AGT+TNKMA ALR++YDQMP+P++VISMGSCANGGGYY+YSYSVVRG DR+VPVDIYVPG
Sbjct: 86  AGTVTNKMAPALRQLYDQMPDPKWVISMGSCANGGGYYYYSYSVVRGVDRVVPVDIYVPG 145

Query: 159 CPPTAEALIYGILLLQKKIRRVGNVK 184
           CPPT EAL+Y I  LQKKIRR    +
Sbjct: 146 CPPTPEALMYAIFQLQKKIRRTKVTR 171


>gi|300772047|ref|ZP_07081917.1| NADH dehydrogenase I [Sphingobacterium spiritivorum ATCC 33861]
 gi|300760350|gb|EFK57176.1| NADH dehydrogenase I [Sphingobacterium spiritivorum ATCC 33861]
          Length = 167

 Score =  222 bits (565), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 87/153 (56%), Positives = 112/153 (73%), Gaps = 1/153 (0%)

Query: 29  ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88
           I +++ + G +V  +D L+ WAR  S+  ++FG+ACCA+EMM A    YDL+R G  PR 
Sbjct: 3   IENQLQNNGVVVAKLDDLLNWARLSSMWPVSFGIACCAIEMMGAMASTYDLDRLGVFPRP 62

Query: 89  SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCD 147
           SPRQSDVMI+AGT+T KMA  +R++Y+QMPEP+YVISMGSC+N GG Y    Y VV+G D
Sbjct: 63  SPRQSDVMIIAGTVTFKMADRIRKLYEQMPEPKYVISMGSCSNCGGPYWQHGYHVVKGVD 122

Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           RI+PVD+YV GCPP  EALI   L LQKKI + 
Sbjct: 123 RIIPVDVYVQGCPPRPEALIGAFLELQKKIEKE 155


>gi|218527958|sp|Q33C30|NDHK_NICTO RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
          Length = 225

 Score =  222 bits (565), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 69/160 (43%), Positives = 105/160 (65%), Gaps = 1/160 (0%)

Query: 22  VDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLER 81
           +++    +         + T+++ L  W+R  SL  + +G +CC +E       R+D +R
Sbjct: 1   MNSIQFPLLDRTAQNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDR 60

Query: 82  FGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSY 140
           +G  PR+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SY
Sbjct: 61  YGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSY 120

Query: 141 SVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           S VRG D+++PVD+Y+PGCPP  EA+I  I  L+KKI R 
Sbjct: 121 STVRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 160


>gi|307154794|ref|YP_003890178.1| NADH-quinone oxidoreductase subunit B [Cyanothece sp. PCC 7822]
 gi|306985022|gb|ADN16903.1| NADH-quinone oxidoreductase, B subunit [Cyanothece sp. PCC 7822]
          Length = 248

 Score =  221 bits (564), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 75/175 (42%), Positives = 114/175 (65%), Gaps = 4/175 (2%)

Query: 4   TTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLA 63
           TT +   I  Q    L  ++   ++++ +++    ++T+VD L  WAR  SL  M +G A
Sbjct: 6   TTQSDLFIQQQKEQILNPINR--TKVTQDLSE-NVILTTVDDLYNWARLSSLWPMLYGTA 62

Query: 64  CCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYV 123
           CC +E       R+D +RFG  PR+SPRQ+D++I AGT+T KM  AL R+Y+QMP+P+YV
Sbjct: 63  CCFIEFAALIGSRFDFDRFGLVPRSSPRQADLIITAGTITMKMGPALVRLYEQMPDPKYV 122

Query: 124 ISMGSCANGGGYY-HYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
           I+MG+C   GG +   S + VRG D+++PVD+Y+PGCPP  EA+   I+ L+KK+
Sbjct: 123 IAMGACTITGGMFSSDSTTAVRGVDKLIPVDVYIPGCPPRPEAIFDAIIKLRKKV 177


>gi|325298883|ref|YP_004258800.1| NAD(P)H-quinone oxidoreductase subunit K [Bacteroides salanitronis
           DSM 18170]
 gi|324318436|gb|ADY36327.1| NAD(P)H-quinone oxidoreductase subunit K [Bacteroides salanitronis
           DSM 18170]
          Length = 205

 Score =  221 bits (564), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 69/161 (42%), Positives = 108/161 (67%), Gaps = 3/161 (1%)

Query: 21  KVDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78
           K +    R+  ++   G   ++T+ D+L+ W R+ S+  +  G +CCA+E M     RYD
Sbjct: 15  KNNDYLERLVQQVNQDGAGVILTTFDELINWGRSNSVWGLLLGTSCCAIEFMALGAARYD 74

Query: 79  LERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137
           + RFGF   R SPRQ+DV++V GT+T + A  ++R+YDQM EP+YV+++G C   GG + 
Sbjct: 75  MARFGFEVTRNSPRQADVLVVMGTITYRTAPVMKRLYDQMAEPKYVVAVGGCTISGGPFI 134

Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
            SY+VV G D+++PVD+Y+PGCPP  EA  YG++ LQ+K++
Sbjct: 135 KSYNVVNGIDKVIPVDVYIPGCPPRPEAFYYGLMQLQRKMK 175


>gi|218527882|sp|A2T337|NDHK_ANGEV RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
 gi|110628308|gb|ABG79604.1| NADH-plastoquinone oxidoreductase subunit K [Angiopteris evecta]
          Length = 250

 Score =  221 bits (564), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 73/178 (41%), Positives = 110/178 (61%), Gaps = 12/178 (6%)

Query: 4   TTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLA 63
              +  +I+   S SL+K                 + T+++    WAR  SL  + +G +
Sbjct: 12  IKSDIPLINSMESYSLDKN-----------MSNSIISTNLNDFSNWARLSSLWPLLYGTS 60

Query: 64  CCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYV 123
           CC +E       R+D +R+G  PR+SPRQ+D++I AGT+T KMA +L R+Y+QMPEP+YV
Sbjct: 61  CCFIEFASLIGSRFDFDRYGLVPRSSPRQADLIITAGTVTMKMAPSLVRLYEQMPEPKYV 120

Query: 124 ISMGSCANGGGYYH-YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           I+MG+C   GG +   SYS VRG D+++PVD+Y+PGCPP  EA+I  I+ L+KK+ + 
Sbjct: 121 IAMGACTITGGMFSTDSYSTVRGIDKLIPVDVYLPGCPPKPEAIIDAIIKLRKKVAQE 178


>gi|295136907|ref|YP_003587739.1| NADH dehydrogenase subunit K [Lathyrus sativus]
 gi|293338629|gb|ADE43601.1| NADH dehydrogenase subunit K [Lathyrus sativus]
          Length = 225

 Score =  221 bits (564), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 70/154 (45%), Positives = 104/154 (67%), Gaps = 1/154 (0%)

Query: 28  RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
            +  + T    + T+++ L  W+R  SL  + +G +CC +E       R+D +R+G  PR
Sbjct: 7   PLLDQKTKNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66

Query: 88  ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146
           +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG 
Sbjct: 67  SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126

Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           D+++PVD+Y+PGCPP  EA+I  I  L+KKI R 
Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 160


>gi|189346374|ref|YP_001942903.1| NADH dehydrogenase subunit B [Chlorobium limicola DSM 245]
 gi|238055283|sp|B3EI94|NUOB_CHLL2 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|189340521|gb|ACD89924.1| NADH-quinone oxidoreductase, B subunit [Chlorobium limicola DSM
           245]
          Length = 189

 Score =  221 bits (564), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 89/147 (60%), Positives = 112/147 (76%), Gaps = 1/147 (0%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           IT    +VTSVD ++ WAR  SL  M FGLACCA+EMM  +   YDLERFG  PR+SPRQ
Sbjct: 8   ITKHNVVVTSVDNVLNWARLSSLWPMGFGLACCAIEMMATNASNYDLERFGIFPRSSPRQ 67

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVP 151
           SD+MIVAGT+T KMA  + R+Y+QMPEPRYV+SMGSC+N GG Y    Y V++G DR++P
Sbjct: 68  SDLMIVAGTVTMKMAERVVRLYEQMPEPRYVLSMGSCSNCGGPYWEHGYHVLKGVDRVIP 127

Query: 152 VDIYVPGCPPTAEALIYGILLLQKKIR 178
           VD+YVPGCPP  E+LI G++ +Q+ IR
Sbjct: 128 VDVYVPGCPPRPESLIGGLMKVQELIR 154


>gi|46134967|ref|XP_389508.1| hypothetical protein FG09332.1 [Gibberella zeae PH-1]
          Length = 233

 Score =  221 bits (564), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 110/143 (76%), Positives = 124/143 (86%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           + +T+VD+L  WARTGSL  MTF LACC +EMM  SMPRYD +R G   RASPRQSDVMI
Sbjct: 81  YALTTVDKLANWARTGSLWPMTFALACCGIEMMHVSMPRYDQDRLGIIFRASPRQSDVMI 140

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYY+YSYSVVRG DRI+PVDIYVP
Sbjct: 141 VAGTLTNKMAPALRQVYDQMPEPRWVISMGSCANGGGYYYYSYSVVRGVDRIIPVDIYVP 200

Query: 158 GCPPTAEALIYGILLLQKKIRRV 180
           GCPPTAEAL+YG+  LQ+KIR+ 
Sbjct: 201 GCPPTAEALMYGVFQLQRKIRKE 223


>gi|112253755|gb|ABI14476.1| NADH-plastoquinone oxidoreductase subunit K [Piper cenocladum]
          Length = 289

 Score =  221 bits (564), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 68/154 (44%), Positives = 103/154 (66%), Gaps = 1/154 (0%)

Query: 28  RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
            +    T    + T+++ L  W+R  SL  + +G +CC +E       R+D +R+G  PR
Sbjct: 67  PLLDRTTQSSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 126

Query: 88  ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146
           +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG 
Sbjct: 127 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 186

Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           D+++PVD+Y+PGCPP  EA++  I  L+KK+ R 
Sbjct: 187 DKLIPVDVYLPGCPPKPEAILDAITKLRKKVSRE 220


>gi|324522539|gb|ADY48077.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 7 [Ascaris
           suum]
          Length = 210

 Score =  221 bits (564), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 95/156 (60%), Positives = 124/156 (79%)

Query: 27  SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP 86
           S  +  ++   + +  VD ++   +  SL  +TFGLACCAVEMM  + PRYD++R+G   
Sbjct: 48  SPFTGPMSTGEYALARVDDVINLCQRTSLWPLTFGLACCAVEMMHFAAPRYDMDRYGVVF 107

Query: 87  RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGC 146
           RASPRQ D++ +AGT+TNKMA ALRR++DQMPE ++VISMGSCANGGGYYHY+YSV++GC
Sbjct: 108 RASPRQVDLIFIAGTVTNKMAPALRRIFDQMPEAKWVISMGSCANGGGYYHYAYSVLKGC 167

Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
           DR++PVDIYVPGCPPTAEAL+YG+L LQKKI+R   
Sbjct: 168 DRVIPVDIYVPGCPPTAEALLYGVLQLQKKIKRKRE 203


>gi|94502495|ref|YP_588121.1| NADH dehydrogenase subunit K [Helianthus annuus]
 gi|122179574|sp|Q1KXV5|NDHK_HELAN RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
 gi|88656899|gb|ABD47150.1| NADH-plastoquinone oxidoreductase subunit K [Helianthus annuus]
          Length = 225

 Score =  221 bits (564), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 70/149 (46%), Positives = 102/149 (68%), Gaps = 1/149 (0%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
            T    + T+++ L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPRQ
Sbjct: 12  TTQNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQ 71

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGCDRIVP 151
           +D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++P
Sbjct: 72  ADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIP 131

Query: 152 VDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           VD+Y+PGCPP  EA+I  I  L+KKI R 
Sbjct: 132 VDVYLPGCPPKPEAIIDAITKLRKKISRE 160


>gi|218511714|sp|P06409|NDHK_TOBAC RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
 gi|218527957|sp|Q3C1J8|NDHK_NICSY RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
          Length = 225

 Score =  221 bits (564), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 70/160 (43%), Positives = 106/160 (66%), Gaps = 1/160 (0%)

Query: 22  VDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLER 81
           +++    +    T    + T+++ L  W+R  SL  + +G +CC +E       R+D +R
Sbjct: 1   MNSIQFPLLDRTTQNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDR 60

Query: 82  FGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSY 140
           +G  PR+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SY
Sbjct: 61  YGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSY 120

Query: 141 SVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           S VRG D+++PVD+Y+PGCPP  EA+I  I  L+KKI R 
Sbjct: 121 STVRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 160


>gi|290790852|gb|ADD63108.1| NADH-plastoquinone oxidoreductase subunit K [Microlaena stipoides]
          Length = 253

 Score =  221 bits (564), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 72/181 (39%), Positives = 110/181 (60%), Gaps = 1/181 (0%)

Query: 1   MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTF 60
           M LT  + K    +       +      +  + +    + T+ + L  W+R  SL  + +
Sbjct: 8   MVLTEYSDKKKKERKDSIETVMSLIEFPLLDQTSSNSVISTTPNDLSNWSRLSSLWPLLY 67

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           G +CC +E       R+D +R+G  PR+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP
Sbjct: 68  GTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEP 127

Query: 121 RYVISMGSCANGGGYYH-YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           +YVI+MG+C   GG +   SYS VRG D+++PVD+Y+PGCPP  EA+I  +  L+KKI R
Sbjct: 128 KYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEAVIDALTKLRKKIAR 187

Query: 180 V 180
            
Sbjct: 188 E 188


>gi|108773214|ref|YP_635742.1| NADH dehydrogenase subunit K [Chara vulgaris]
 gi|122231312|sp|Q1ACK5|NDHK_CHAVU RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
 gi|77157870|gb|ABA61911.1| 27 kDa subunit of NADH-ubiquinone oxidoreductase [Chara vulgaris]
          Length = 244

 Score =  221 bits (564), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 75/189 (39%), Positives = 120/189 (63%), Gaps = 11/189 (5%)

Query: 1   MGLTTVNQKIISGQSSCSLEKVDADF------SRISSEITHKGFLVTSVDQLVTWARTGS 54
           M L  +N  +    +  SL++ + DF         +++I     ++T+++ L  WAR  S
Sbjct: 1   MVLVYLNSNL----NLRSLKETNHDFLINSTERLTTNQILSTSVILTTMNDLTNWARLSS 56

Query: 55  LMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVY 114
           L  + +G +CC +E       R+D +R+G  PR+SPRQ+D++I AGT+T KMA +L R+Y
Sbjct: 57  LWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLIITAGTVTMKMAPSLVRLY 116

Query: 115 DQMPEPRYVISMGSCANGGGYYH-YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLL 173
           +QM EP+YVI+MG+C   GG +   SYS VRG D+++PV++Y+PGCPP  EA+I G++ L
Sbjct: 117 EQMAEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVNVYLPGCPPKPEAIIDGVIKL 176

Query: 174 QKKIRRVGN 182
           +K+I +   
Sbjct: 177 RKQIAQENT 185


>gi|218527895|sp|Q49KZ4|NDHK_EUCGG RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
          Length = 225

 Score =  221 bits (564), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 70/154 (45%), Positives = 104/154 (67%), Gaps = 1/154 (0%)

Query: 28  RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
            + +  T    + T+++ L  W+R  SL  + +G +CC +E       R+D +R+G  PR
Sbjct: 7   PLLARTTQNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66

Query: 88  ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146
           +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG 
Sbjct: 67  SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126

Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           D+++PVD+Y+PGCPP  EA+I  I  L+KKI R 
Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKIARE 160


>gi|154795238|ref|NP_777417.3| NADH dehydrogenase subunit K [Anthoceros formosae]
          Length = 229

 Score =  221 bits (563), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 72/159 (45%), Positives = 106/159 (66%), Gaps = 1/159 (0%)

Query: 27  SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP 86
           S +  E T    ++T+ +    WAR  SL  + +G +CC +E       R+D +R+G  P
Sbjct: 6   SSLPDETTSDSIILTTFNDFSNWARLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVP 65

Query: 87  RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRG 145
           R+SPRQ+D++I AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG
Sbjct: 66  RSSPRQADLIITAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRG 125

Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
            D+++PVDIY+PGCPP  EA+I  I+ L+K + R  + +
Sbjct: 126 VDKLIPVDIYLPGCPPKPEAIIDAIIKLRKGVAREVHER 164


>gi|281190728|ref|YP_003330965.1| NADH dehydrogenase subunit K [Parthenium argentatum]
 gi|269924841|gb|ACZ52714.1| NADH dehydrogenase subunit K [Parthenium argentatum]
          Length = 225

 Score =  221 bits (563), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 70/149 (46%), Positives = 102/149 (68%), Gaps = 1/149 (0%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
            T    + T+++ L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPRQ
Sbjct: 12  TTQNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQ 71

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGCDRIVP 151
           +D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++P
Sbjct: 72  ADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIP 131

Query: 152 VDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           VD+Y+PGCPP  EA+I  I  L+KKI R 
Sbjct: 132 VDVYLPGCPPKPEAIIDAITKLRKKISRE 160


>gi|84682208|gb|ABC60462.1| NADH-plastoquinone oxidoreductase subunit K [Nuphar advena]
          Length = 283

 Score =  221 bits (563), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 69/149 (46%), Positives = 102/149 (68%), Gaps = 1/149 (0%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
            T    + T+++ L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPRQ
Sbjct: 70  TTPNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQ 129

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGCDRIVP 151
           +D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++P
Sbjct: 130 ADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIP 189

Query: 152 VDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           VD+Y+PGCPP  EA+I  I  L+KK+ R 
Sbjct: 190 VDVYLPGCPPKPEAIIDAITKLRKKVSRE 218


>gi|317121157|ref|YP_004101160.1| NADH dehydrogenase subunit B [Thermaerobacter marianensis DSM
           12885]
 gi|315591137|gb|ADU50433.1| NADH dehydrogenase subunit B [Thermaerobacter marianensis DSM
           12885]
          Length = 193

 Score =  221 bits (563), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 82/145 (56%), Positives = 106/145 (73%)

Query: 37  GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVM 96
           G + T++  LV W R  SL ++ FG+ACCA+EMM A   R DL+R G   RASPRQ+D+M
Sbjct: 46  GVITTNLQTLVNWGRKNSLWYLLFGIACCAIEMMAAGASRIDLDRLGSVFRASPRQADLM 105

Query: 97  IVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV 156
           IVAGT+T KMA  ++ +YDQM EP+YVI+MG+CA+ GG Y+  Y+VV G D+IVPVD+YV
Sbjct: 106 IVAGTVTEKMAPVIKTLYDQMAEPKYVIAMGACASNGGPYYQGYNVVDGVDKIVPVDVYV 165

Query: 157 PGCPPTAEALIYGILLLQKKIRRVG 181
            GCPP  EALIY I+ LQ K+ R  
Sbjct: 166 AGCPPRPEALIYAIMKLQDKVARAN 190


>gi|328953790|ref|YP_004371124.1| NAD(P)H-quinone oxidoreductase subunit K [Desulfobacca acetoxidans
           DSM 11109]
 gi|328454114|gb|AEB09943.1| NAD(P)H-quinone oxidoreductase subunit K [Desulfobacca acetoxidans
           DSM 11109]
          Length = 174

 Score =  221 bits (563), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 82/150 (54%), Positives = 109/150 (72%), Gaps = 2/150 (1%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89
            E      L TS++++V WAR  SL   TFGLACCA+EM+  +  RYD+ RFG    RAS
Sbjct: 4   EEHLGNNILTTSLEKMVDWARKNSLWPATFGLACCAIEMIVTAANRYDIARFGMEAFRAS 63

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQ+D+MIVAGT+T KM  A+ R+Y+QM EP++VI+MG+CA+ GG +  SY+VV+G D+ 
Sbjct: 64  PRQADLMIVAGTVTKKMVPAVVRIYEQMTEPKWVIAMGACASSGGIFR-SYAVVQGIDQY 122

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           +PVD+YVPGCPP  E L+YGIL L  KI +
Sbjct: 123 LPVDVYVPGCPPRPEGLLYGILKLHDKILK 152


>gi|15806517|ref|NP_295228.1| NADH dehydrogenase subunit B [Deinococcus radiodurans R1]
 gi|81624845|sp|Q9RU87|NUOB_DEIRA RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|6459265|gb|AAF11070.1|AE001994_6 NADH dehydrogenase I, B subunit [Deinococcus radiodurans R1]
          Length = 181

 Score =  221 bits (563), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 87/154 (56%), Positives = 115/154 (74%), Gaps = 2/154 (1%)

Query: 26  FSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA 85
             R   E+  +G L +S+++LV W R+ SL   TFGLACCA+EMM ++  R D+ RFG  
Sbjct: 7   IDRDWQELESEGVLFSSLEKLVAWGRSNSLWPATFGLACCAIEMMSSTNARNDMSRFGSE 66

Query: 86  -PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR 144
             RASPRQ+DVMIVAG L+ KMA  +RRVYDQMP+P++VISMG+CA+ GG ++  Y+VV+
Sbjct: 67  VFRASPRQADVMIVAGRLSKKMAPVMRRVYDQMPDPKWVISMGACASSGGMFNN-YAVVQ 125

Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
             D +VPVDI+VPGCPP  EALIY ++ LQKK+R
Sbjct: 126 NVDSVVPVDIFVPGCPPRPEALIYAVMQLQKKVR 159


>gi|33239776|ref|NP_874718.1| NADH dehydrogenase subunit B [Prochlorococcus marinus subsp.
           marinus str. CCMP1375]
 gi|81664982|sp|Q7VDP4|NDHK_PROMA RecName: Full=NAD(P)H-quinone oxidoreductase subunit K; AltName:
           Full=NAD(P)H dehydrogenase I subunit K; AltName:
           Full=NDH-1 subunit K; Short=NDH-K
 gi|33237302|gb|AAP99370.1| NAD(P)H-quinone oxidoreductase subunit K [Prochlorococcus marinus
           subsp. marinus str. CCMP1375]
          Length = 242

 Score =  221 bits (563), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 70/145 (48%), Positives = 102/145 (70%), Gaps = 1/145 (0%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
             +  ++TS+D L  WAR  SL  + +G ACC +E       R+D +RFG  PR+SPRQ+
Sbjct: 30  LSENIILTSLDDLHNWARLSSLWPLLYGTACCFIEFAALIGSRFDFDRFGLVPRSSPRQA 89

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGCDRIVPV 152
           D++IVAGT+T KMA AL R+Y+QMP+P+YVI+MG+C   GG +   S + VRG D+++PV
Sbjct: 90  DLLIVAGTVTMKMAPALVRLYEQMPDPKYVIAMGACTITGGMFSADSTTAVRGVDKLIPV 149

Query: 153 DIYVPGCPPTAEALIYGILLLQKKI 177
           D+Y+PGCPP  EA+   ++ L+KK+
Sbjct: 150 DLYLPGCPPRPEAIFDAVIKLRKKV 174


>gi|292559512|ref|YP_003540935.1| NADH-plastoquinone oxidoreductase subunit K [Phoenix dactylifera]
 gi|290790920|gb|ADD63175.1| NADH-plastoquinone oxidoreductase subunit K [Phoenix dactylifera]
 gi|294620581|gb|ADF28150.1| NADH-plastoquinone oxidoreductase subunit K [Phoenix dactylifera]
          Length = 255

 Score =  221 bits (563), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 69/154 (44%), Positives = 104/154 (67%), Gaps = 1/154 (0%)

Query: 28  RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
            +  + T    + T+ + L  W+R  SL  + +G +CC +E       R+D +R+G  P+
Sbjct: 29  PLLDQTTPNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPK 88

Query: 88  ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146
           +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG 
Sbjct: 89  SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 148

Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           D+++PVD+Y+PGCPP  EA+I  I+ L+KKI R 
Sbjct: 149 DKLIPVDVYLPGCPPKPEAVIDAIMKLRKKISRE 182


>gi|290489726|gb|ADD31247.1| NADH-plastoquinone oxidoreductase subunit K protein [Bulnesia
           arborea]
          Length = 225

 Score =  221 bits (563), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 70/154 (45%), Positives = 102/154 (66%), Gaps = 1/154 (0%)

Query: 28  RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
            +    T    + T+++    W+R  SL  + +G +CC +E       R+D +R+G  PR
Sbjct: 7   PLLDRTTKNSVISTTLNDFSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66

Query: 88  ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146
           +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG 
Sbjct: 67  SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126

Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           D+++PVDIY+PGCPP  EA+I  I  L+KKI R 
Sbjct: 127 DKLIPVDIYLPGCPPKPEAVIDAITKLRKKISRE 160


>gi|268678781|ref|YP_003303212.1| NADH-quinone oxidoreductase subunit beta [Sulfurospirillum
           deleyianum DSM 6946]
 gi|268616812|gb|ACZ11177.1| NADH-quinone oxidoreductase, B subunit [Sulfurospirillum deleyianum
           DSM 6946]
          Length = 169

 Score =  221 bits (563), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 85/147 (57%), Positives = 111/147 (75%), Gaps = 1/147 (0%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
             +T+VD+LV W R+ SL  +T+GLACCA+EMM     RYD +RFG   RASPRQ+DV++
Sbjct: 16  VALTTVDKLVQWGRSNSLWPLTYGLACCAIEMMATGASRYDFDRFGTIFRASPRQADVIV 75

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           +AGTLT K A  +RR+YDQMP+P++VISMGSCAN GG ++ +Y+ V+G DRIVPVDIY+P
Sbjct: 76  IAGTLTKKHAPFMRRLYDQMPDPKWVISMGSCANTGGMFN-TYATVQGADRIVPVDIYLP 134

Query: 158 GCPPTAEALIYGILLLQKKIRRVGNVK 184
           GC P  E L Y ++LLQKKIR     +
Sbjct: 135 GCAPRPETLQYALMLLQKKIRTEKASR 161


>gi|290790784|gb|ADD63041.1| NADH-plastoquinone oxidoreductase subunit K [Potamophila
           parviflora]
          Length = 253

 Score =  221 bits (563), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 68/154 (44%), Positives = 103/154 (66%), Gaps = 1/154 (0%)

Query: 28  RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
            +  + +    + T+ + L  W+R  SL  + +G +CC +E       R+D +R+G  PR
Sbjct: 35  PLLDQTSSNSVISTTPNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 94

Query: 88  ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146
           +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG 
Sbjct: 95  SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 154

Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           D+++PVD+Y+PGCPP  EA+I  +  L+KKI R 
Sbjct: 155 DKLIPVDVYLPGCPPKPEAVIDALTKLRKKISRE 188


>gi|218527961|sp|A8Y9H4|NDHK_LOLPR RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
          Length = 225

 Score =  221 bits (563), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 68/154 (44%), Positives = 103/154 (66%), Gaps = 1/154 (0%)

Query: 28  RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
            +  + +    + T+ + L  W+R  SL  + +G +CC +E       R+D +R+G  PR
Sbjct: 7   PLLDQTSSNSVISTTPNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66

Query: 88  ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146
           +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG 
Sbjct: 67  SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126

Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           D+++PVD+Y+PGCPP  EA+I  +  L+KKI R 
Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDALTKLRKKISRE 160


>gi|159106868|ref|YP_001531287.1| NADH-plastoquinone oxidoreductase subunit K [Lolium perenne]
 gi|158934402|emb|CAO85980.1| NADH-plastoquinone oxidoreductase subunit K [Lolium perenne]
          Length = 246

 Score =  221 bits (563), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 68/154 (44%), Positives = 103/154 (66%), Gaps = 1/154 (0%)

Query: 28  RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
            +  + +    + T+ + L  W+R  SL  + +G +CC +E       R+D +R+G  PR
Sbjct: 28  PLLDQTSSNSVISTTPNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 87

Query: 88  ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146
           +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG 
Sbjct: 88  SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 147

Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           D+++PVD+Y+PGCPP  EA+I  +  L+KKI R 
Sbjct: 148 DKLIPVDVYLPGCPPKPEAVIDALTKLRKKISRE 181


>gi|32267101|ref|NP_861133.1| NADH dehydrogenase subunit B [Helicobacter hepaticus ATCC 51449]
 gi|81665416|sp|Q7VFS3|NUOB_HELHP RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|32263153|gb|AAP78199.1| donor-ubiquinone reductase I [Helicobacter hepaticus ATCC 51449]
          Length = 169

 Score =  221 bits (563), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 84/146 (57%), Positives = 115/146 (78%), Gaps = 1/146 (0%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
            +++SVD+L+ W+R+ SL  +T+GLACCA+EMM     R+DL+RFG   RASPRQSD+MI
Sbjct: 16  IVLSSVDKLLNWSRSNSLWGVTYGLACCAIEMMATGGSRFDLDRFGSIFRASPRQSDLMI 75

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           ++GT+T K A  +RR+YDQMPEP++VISMGSCAN GG ++ +Y+ V+G DRI+PVDIY+P
Sbjct: 76  ISGTVTKKHAEFVRRLYDQMPEPKWVISMGSCANTGGMFN-TYATVQGVDRIIPVDIYLP 134

Query: 158 GCPPTAEALIYGILLLQKKIRRVGNV 183
           GC P  E L Y I++LQ+KIRR   +
Sbjct: 135 GCAPRPETLQYAIMVLQQKIRRQKAL 160


>gi|75248911|sp|Q8WI14|NDHK_PSINU RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
 gi|18389468|dbj|BAB84220.1| NADH dehydrogenase 27kD subunit [Psilotum nudum]
          Length = 207

 Score =  221 bits (563), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 71/155 (45%), Positives = 106/155 (68%), Gaps = 1/155 (0%)

Query: 27  SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP 86
           S +S   T    ++T+++    WAR  SL  + +G +CC +E       R+D +R+G  P
Sbjct: 10  SLVSKPNTSNSIILTNLNDFSNWARLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVP 69

Query: 87  RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRG 145
           R+SPRQ+D++I AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG
Sbjct: 70  RSSPRQADLIITAGTVTMKMAPSLIRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRG 129

Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
            D+++PVDIY+PGCPP  EA+I  ++ L+KK+ + 
Sbjct: 130 VDKLIPVDIYLPGCPPKPEAIIDAVIKLRKKVAQE 164


>gi|94985017|ref|YP_604381.1| NADH-quinone oxidoreductase, B subunit [Deinococcus geothermalis
           DSM 11300]
 gi|238055292|sp|Q1IZX2|NUOB_DEIGD RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|94555298|gb|ABF45212.1| NADH dehydrogenase subunit B [Deinococcus geothermalis DSM 11300]
          Length = 178

 Score =  221 bits (563), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 87/154 (56%), Positives = 116/154 (75%), Gaps = 2/154 (1%)

Query: 26  FSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA 85
           F R   E+  +G L +++++LV W R+ SL   TFGLACCA+EMM ++  R DL RFG  
Sbjct: 7   FDRDWQELESEGVLFSTLEKLVAWGRSNSLWPATFGLACCAIEMMSSTDGRNDLSRFGSE 66

Query: 86  -PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR 144
             RASPRQ+DVMIVAG L+ KMA  +RRVYDQMP+P++VISMG+CA+ GG ++  Y+VV+
Sbjct: 67  VFRASPRQADVMIVAGRLSKKMAPIMRRVYDQMPDPKWVISMGACASSGGMFNN-YAVVQ 125

Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
             D +VPVD++VPGCPP  EALIY ++ LQKK+R
Sbjct: 126 NVDHVVPVDVFVPGCPPRPEALIYAVMQLQKKVR 159


>gi|194476962|ref|YP_002049141.1| NADH dehydrogenase beta subunit [Paulinella chromatophora]
 gi|218527929|sp|B1X4R2|NDHK_PAUCH RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, organellar
           chromatophore; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
 gi|171191969|gb|ACB42931.1| NADH dehydrogenase beta subunit [Paulinella chromatophora]
          Length = 246

 Score =  221 bits (563), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 71/145 (48%), Positives = 102/145 (70%), Gaps = 1/145 (0%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
             +  ++TS+D L  WAR  SL  + +G ACC +E       R+D +RFG  PR+SPRQ+
Sbjct: 28  LSENIILTSLDDLHNWARLSSLWPLLYGTACCFIEFAALIGSRFDFDRFGLVPRSSPRQA 87

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGCDRIVPV 152
           D++IVAGT+T KMA AL R+Y+QMPEP+YVI+MG+C   GG +   S + VRG D+++PV
Sbjct: 88  DLIIVAGTVTMKMAPALVRLYEQMPEPKYVIAMGACTITGGMFSSDSTTAVRGVDKLIPV 147

Query: 153 DIYVPGCPPTAEALIYGILLLQKKI 177
           D+Y+PGCPP  EA+   ++ L+KK+
Sbjct: 148 DLYLPGCPPRPEAIFDAVIKLRKKV 172


>gi|154813768|ref|NP_569633.2| NADH dehydrogenase subunit K [Psilotum nudum]
          Length = 203

 Score =  221 bits (563), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 71/155 (45%), Positives = 106/155 (68%), Gaps = 1/155 (0%)

Query: 27  SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP 86
           S +S   T    ++T+++    WAR  SL  + +G +CC +E       R+D +R+G  P
Sbjct: 6   SLVSKPNTSNSIILTNLNDFSNWARLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVP 65

Query: 87  RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRG 145
           R+SPRQ+D++I AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG
Sbjct: 66  RSSPRQADLIITAGTVTMKMAPSLIRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRG 125

Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
            D+++PVDIY+PGCPP  EA+I  ++ L+KK+ + 
Sbjct: 126 VDKLIPVDIYLPGCPPKPEAIIDAVIKLRKKVAQE 160


>gi|81176254|ref|YP_398333.1| NADH dehydrogenase subunit K [Lactuca sativa]
 gi|122212029|sp|Q332X4|NDHK_LACSA RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
 gi|78675172|dbj|BAE47598.1| NAD(P)H-quinone oxidoreductase chain K [Lactuca sativa]
 gi|88656987|gb|ABD47237.1| NADH-plastoquinone oxidoreductase subunit K [Lactuca sativa]
          Length = 225

 Score =  221 bits (563), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 70/149 (46%), Positives = 102/149 (68%), Gaps = 1/149 (0%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
            T    + T+++ L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPRQ
Sbjct: 12  TTQNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQ 71

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGCDRIVP 151
           +D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++P
Sbjct: 72  ADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIP 131

Query: 152 VDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           VD+Y+PGCPP  EA+I  I  L+KKI R 
Sbjct: 132 VDVYLPGCPPKPEAIIDAITKLRKKISRE 160


>gi|329957597|ref|ZP_08298072.1| putative NADH dehydrogenase I subunit B [Bacteroides clarus YIT
           12056]
 gi|328522474|gb|EGF49583.1| putative NADH dehydrogenase I subunit B [Bacteroides clarus YIT
           12056]
          Length = 195

 Score =  221 bits (563), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 76/175 (43%), Positives = 110/175 (62%), Gaps = 3/175 (1%)

Query: 5   TVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLAC 64
             N K I  +     E ++     +++        +  +D  V W R+ SL  +TF  +C
Sbjct: 6   KPNIKSIPYEEFTDNETLEKLVWELNA--GGANVALGVLDDFVNWGRSNSLWPLTFATSC 63

Query: 65  CAVEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYV 123
           C +E M     RYD+ RFGF   RASPRQ+D+++V GT+TNKMA  L+R+YDQM +P+YV
Sbjct: 64  CGIEFMALGAARYDMARFGFEVARASPRQADMIMVCGTITNKMAPVLKRLYDQMADPKYV 123

Query: 124 ISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           I++G CA  GG +  SY VV G D+I+PVD+Y+PGCPP  EA  YG++ LQ+K++
Sbjct: 124 IAVGGCAVSGGPFKKSYHVVNGVDKILPVDVYIPGCPPRPEAFYYGMMQLQRKVK 178


>gi|282901528|ref|ZP_06309450.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit [Cylindrospermopsis
           raciborskii CS-505]
 gi|281193571|gb|EFA68546.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit [Cylindrospermopsis
           raciborskii CS-505]
          Length = 245

 Score =  221 bits (563), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 73/157 (46%), Positives = 103/157 (65%), Gaps = 1/157 (0%)

Query: 22  VDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLER 81
              +     ++   +  ++T+VD L  WAR  SL  + FG ACC +E       R+D +R
Sbjct: 17  NPIERPTTVTQELSENVILTTVDDLYNWARLSSLWPLLFGTACCFIEFAALIGSRFDFDR 76

Query: 82  FGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSY 140
           FG  PR+SPRQ+D++I AGT+T KM   L R+Y+QMPEP+YVI+MG+C   GG +   S 
Sbjct: 77  FGLIPRSSPRQADLLITAGTITVKMGPQLVRLYEQMPEPKYVIAMGACTITGGMFSVDSP 136

Query: 141 SVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
           S VRG D+++PVD+Y+PGCPP  EA+I  I+ L+KKI
Sbjct: 137 SAVRGVDKLIPVDVYLPGCPPRPEAIIDAIIKLRKKI 173


>gi|218511715|sp|P26304|NDHK_WHEAT RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
          Length = 225

 Score =  221 bits (563), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 68/154 (44%), Positives = 103/154 (66%), Gaps = 1/154 (0%)

Query: 28  RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
            +  + +    + T+ + L  W+R  SL  + +G +CC +E       R+D +R+G  PR
Sbjct: 7   PLLDQTSSNSVISTTPNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66

Query: 88  ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146
           +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG 
Sbjct: 67  SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126

Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           D+++PVD+Y+PGCPP  EA+I  +  L+KKI R 
Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDALTKLRKKISRE 160


>gi|157164838|ref|YP_001466103.1| NADH dehydrogenase subunit B [Campylobacter concisus 13826]
 gi|238055276|sp|A7ZBE5|NUOB_CAMC1 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|112800518|gb|EAT97862.1| NADH-quinone oxidoreductase, b subunit [Campylobacter concisus
           13826]
          Length = 170

 Score =  221 bits (563), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 85/147 (57%), Positives = 112/147 (76%), Gaps = 1/147 (0%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
            ++T+VD+LV W R+ SL  +++GLACCA+EMM +   RYD +RFG   RASPR S+VMI
Sbjct: 16  VVLTTVDKLVQWGRSNSLWALSYGLACCAIEMMASGASRYDFDRFGTIFRASPRHSEVMI 75

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           +AGTLT K A   RR+YDQMPEP++VISMGSCAN GG ++ +YS V+G DRI+PVDIY+P
Sbjct: 76  IAGTLTKKHAEFTRRLYDQMPEPKWVISMGSCANTGGMFN-TYSTVQGVDRIIPVDIYIP 134

Query: 158 GCPPTAEALIYGILLLQKKIRRVGNVK 184
           GC P  E L Y +++LQKKIR+    +
Sbjct: 135 GCAPRPETLQYALMMLQKKIRKQSAFR 161


>gi|73748692|ref|YP_307931.1| proton-translocating NADH-quinone oxidoreductase, B subunit
           [Dehalococcoides sp. CBDB1]
 gi|289432718|ref|YP_003462591.1| NADH-quinone oxidoreductase subunit beta [Dehalococcoides sp. GT]
 gi|123619736|sp|Q3ZXS0|NUOB_DEHSC RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|73660408|emb|CAI83015.1| proton-translocating NADH-quinone oxidoreductase, B subunit
           [Dehalococcoides sp. CBDB1]
 gi|288946438|gb|ADC74135.1| NADH-quinone oxidoreductase, B subunit [Dehalococcoides sp. GT]
          Length = 200

 Score =  221 bits (563), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 83/177 (46%), Positives = 116/177 (65%), Gaps = 1/177 (0%)

Query: 9   KIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVE 68
            +I    +            ++ E    G  +TSV++++ W+R  SL  + FGLACCA+E
Sbjct: 23  GVIQSFRTGHTSPYPDPADWLNGEEPPPGVFITSVEKVLNWSRHYSLWPVMFGLACCAIE 82

Query: 69  MMQASMPRYDLERFGF-APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMG 127
           MM  +  R+DL RFG    RASPRQ+D+MIVAGTLT KMA  L+R+YDQMPEP++V++MG
Sbjct: 83  MMCMAASRWDLARFGMDIFRASPRQADLMIVAGTLTWKMAPWLKRIYDQMPEPKWVLAMG 142

Query: 128 SCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           +C   GG +  SYSVV G + +VPVD+YVPGCPP  EAL+  I+ + +KI +   +K
Sbjct: 143 ACGTSGGLFRDSYSVVPGFNLVVPVDVYVPGCPPRPEALMRAIMDIHEKIDKTRILK 199


>gi|299137549|ref|ZP_07030730.1| NADH-quinone oxidoreductase, B subunit [Acidobacterium sp.
           MP5ACTX8]
 gi|298600190|gb|EFI56347.1| NADH-quinone oxidoreductase, B subunit [Acidobacterium sp.
           MP5ACTX8]
          Length = 205

 Score =  221 bits (563), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 81/178 (45%), Positives = 116/178 (65%), Gaps = 2/178 (1%)

Query: 2   GLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFG 61
            +   N + I G      +  D        E   +G ++ S+D  + W R  S+  MTFG
Sbjct: 16  SVPQHNDRYIFGTLDSFGKNRDKVAEVSWGEEQPEGVVLASLDAAINWVRKNSVWPMTFG 75

Query: 62  LACCAVEMMQASMPRYDLERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           LACCA+EMM     RYD+ RFG    R SPRQSD+MI+AG ++ KMA  +RR+Y+QMPEP
Sbjct: 76  LACCAIEMMSMGGSRYDIARFGAEVFRPSPRQSDLMIIAGRVSQKMAPVIRRLYEQMPEP 135

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           ++VISMG+CA  GG ++  Y++++G ++++PVD+YVPGCPP  E L+Y I LLQ+KI+
Sbjct: 136 KWVISMGACATSGGVFNN-YALLQGVNQVIPVDVYVPGCPPRPEQLLYAITLLQEKIQ 192


>gi|326200285|gb|ADZ52324.1| NADH dehydrogenase 32 kDa subunit [Asclepias syriaca]
          Length = 227

 Score =  221 bits (563), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 69/154 (44%), Positives = 103/154 (66%), Gaps = 1/154 (0%)

Query: 28  RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
            + +       + T+++ L  W+R  SL  + +G +CC +E       R+D +R+G  PR
Sbjct: 7   PLLNRTIQNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66

Query: 88  ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146
           +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG 
Sbjct: 67  SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126

Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           D+++PVD+Y+PGCPP  EA+I  I  L+KKI R 
Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 160


>gi|269836326|ref|YP_003318554.1| NADH-quinone oxidoreductase, B subunit [Sphaerobacter thermophilus
           DSM 20745]
 gi|269785589|gb|ACZ37732.1| NADH-quinone oxidoreductase, B subunit [Sphaerobacter thermophilus
           DSM 20745]
          Length = 185

 Score =  221 bits (563), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 86/156 (55%), Positives = 118/156 (75%), Gaps = 2/156 (1%)

Query: 29  ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDL-ERFGFAPR 87
           +  +   +  L T+VD +  WAR  SL W+ FGLACCA+EM+ A+MPR+DL ERFG   R
Sbjct: 3   VIEDRFERNILTTTVDTVFNWARRSSLWWLQFGLACCAIEMISAAMPRFDLAERFGMLYR 62

Query: 88  ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCD 147
           ASPRQ+D+MIVAGT+T KMA  +R++YDQM +P++VISMGSCAN GG +  +Y+VV+G D
Sbjct: 63  ASPRQADLMIVAGTVTKKMAPVVRQLYDQMADPKWVISMGSCANVGGPF-DTYAVVQGVD 121

Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           +++PVD+YVPGCPP  EAL YG+L LQ ++ +   +
Sbjct: 122 QVIPVDVYVPGCPPLPEALYYGVLELQNRVIKYDTI 157


>gi|332296570|ref|YP_004438493.1| NAD(P)H-quinone oxidoreductase subunit K [Thermodesulfobium
           narugense DSM 14796]
 gi|332179673|gb|AEE15362.1| NAD(P)H-quinone oxidoreductase subunit K [Thermodesulfobium
           narugense DSM 14796]
          Length = 178

 Score =  221 bits (563), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 91/173 (52%), Positives = 123/173 (71%), Gaps = 5/173 (2%)

Query: 15  SSCSLEKVDADFSRISSEITHKGFLVTSVDQ----LVTWARTGSLMWMTFGLACCAVEMM 70
           S   +++ + + +     I     +V+ +D+    +V W R  SL  MTFGLACCA+EMM
Sbjct: 2   SENGVKEREIEIADGVKAIPAANAIVSPIDKAINWVVNWGRVSSLWPMTFGLACCAIEMM 61

Query: 71  QASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCA 130
               P  DL+RFG   RASPRQ+D+MIVAGT+T KMA  LRRVYDQMP+PRYVISMGSCA
Sbjct: 62  AVGAPHNDLDRFGILFRASPRQADLMIVAGTVTLKMAPVLRRVYDQMPQPRYVISMGSCA 121

Query: 131 NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           N GG ++ +YSV++G D++VPVD+Y+PGCPP  EAL++ +L LQ+KI++   V
Sbjct: 122 NSGGIFN-TYSVLQGVDQVVPVDVYLPGCPPRPEALLHALLYLQQKIKKERMV 173


>gi|126165918|ref|YP_398867.2| NADH dehydrogenase subunit K [Nicotiana tomentosiformis]
          Length = 247

 Score =  221 bits (563), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 69/160 (43%), Positives = 105/160 (65%), Gaps = 1/160 (0%)

Query: 22  VDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLER 81
           +++    +         + T+++ L  W+R  SL  + +G +CC +E       R+D +R
Sbjct: 23  MNSIQFPLLDRTAQNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDR 82

Query: 82  FGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSY 140
           +G  PR+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SY
Sbjct: 83  YGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSY 142

Query: 141 SVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           S VRG D+++PVD+Y+PGCPP  EA+I  I  L+KKI R 
Sbjct: 143 STVRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 182


>gi|299830273|ref|YP_003734437.1| NADH dehydrogenase subunit 10 [Paramecium caudatum]
 gi|299507832|emb|CAZ66816.1| NADH dehydrogenase subunit 10 [Paramecium caudatum]
          Length = 154

 Score =  221 bits (563), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 97/147 (65%), Positives = 124/147 (84%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           FL TS + L++WAR GS   +TFGLACCA+EMM A++ RYD +RFG   RA+PRQSD++I
Sbjct: 5   FLKTSANNLISWARQGSFWPLTFGLACCALEMMHATVSRYDFDRFGVIFRATPRQSDLII 64

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGT+TNKMA ALRR+YDQ  +P++V+SMGSCANGGGYYHYSY+VV+GCD+I+PVDI+VP
Sbjct: 65  VAGTVTNKMAPALRRLYDQTADPKWVLSMGSCANGGGYYHYSYAVVKGCDKIIPVDIFVP 124

Query: 158 GCPPTAEALIYGILLLQKKIRRVGNVK 184
           GCPP+AEAL +G+L LQK + +  N K
Sbjct: 125 GCPPSAEALFFGVLQLQKTLMKTINEK 151


>gi|116617112|ref|YP_817486.1| NADH-plastoquinone oxidoreductase subunit K [Coffea arabica]
 gi|122153625|sp|A0A339|NDHK_COFAR RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
 gi|116242168|gb|ABJ89683.1| NADH-plastoquinone oxidoreductase subunit K [Coffea arabica]
          Length = 229

 Score =  220 bits (562), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 68/154 (44%), Positives = 101/154 (65%), Gaps = 1/154 (0%)

Query: 28  RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
            +         + T+++    W+R  SL  + +G +CC +E       R+D +R+G  PR
Sbjct: 7   PLLDRTAQNSVISTTLNDFSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66

Query: 88  ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146
           +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG 
Sbjct: 67  SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126

Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           D+++PVD+Y+PGCPP  EA+I  I  L+KKI R 
Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 160


>gi|164597808|ref|NP_084666.2| NADH dehydrogenase subunit K [Oenothera elata subsp. hookeri]
 gi|169142697|ref|YP_001687124.1| NADH dehydrogenase subunit K [Oenothera argillicola]
 gi|169142847|ref|YP_001687270.1| NADH dehydrogenase subunit K [Oenothera glazioviana]
 gi|169142932|ref|YP_001687354.1| NADH dehydrogenase subunit K [Oenothera biennis]
 gi|169143018|ref|YP_001687438.1| NADH dehydrogenase subunit K [Oenothera parviflora]
 gi|172045789|sp|Q9MTP4|NDHK_OENEH RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
 gi|218527924|sp|B0Z4L3|NDHK_OENAR RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
 gi|218527925|sp|B0Z4U7|NDHK_OENBI RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
 gi|218527926|sp|B0Z531|NDHK_OENGL RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
 gi|218527927|sp|B0Z5B5|NDHK_OENPA RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
 gi|159792935|gb|ABW98691.1| NADH dehydrogenase subunit K [Oenothera argillicola]
 gi|159793105|gb|ABW98859.1| NADH dehydrogenase subunit K [Oenothera biennis]
 gi|159895459|gb|ABX10024.1| NADH dehydrogenase subunit K [Oenothera glazioviana]
 gi|159895544|gb|ABX10108.1| NADH dehydrogenase subunit K [Oenothera parviflora]
 gi|162423675|emb|CAB67131.2| NADH dehydrogenase subunit K [Oenothera elata subsp. hookeri]
          Length = 225

 Score =  220 bits (562), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 70/148 (47%), Positives = 101/148 (68%), Gaps = 1/148 (0%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
           T    + T+ + L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPRQ+
Sbjct: 13  TQNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 72

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGCDRIVPV 152
           D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++PV
Sbjct: 73  DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 132

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRV 180
           D+Y+PGCPP  EA+I  I  L+KKI R 
Sbjct: 133 DVYLPGCPPKPEAIIDAITKLRKKISRE 160


>gi|126165911|ref|YP_358680.2| NADH dehydrogenase subunit K [Nicotiana sylvestris]
 gi|126165916|ref|NP_054503.2| NADH dehydrogenase subunit K [Nicotiana tabacum]
          Length = 247

 Score =  220 bits (562), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 70/160 (43%), Positives = 106/160 (66%), Gaps = 1/160 (0%)

Query: 22  VDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLER 81
           +++    +    T    + T+++ L  W+R  SL  + +G +CC +E       R+D +R
Sbjct: 23  MNSIQFPLLDRTTQNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDR 82

Query: 82  FGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSY 140
           +G  PR+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SY
Sbjct: 83  YGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSY 142

Query: 141 SVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           S VRG D+++PVD+Y+PGCPP  EA+I  I  L+KKI R 
Sbjct: 143 STVRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 182


>gi|307721750|ref|YP_003892890.1| NADH dehydrogenase subunit B [Sulfurimonas autotrophica DSM 16294]
 gi|306979843|gb|ADN09878.1| NADH dehydrogenase subunit B [Sulfurimonas autotrophica DSM 16294]
          Length = 169

 Score =  220 bits (562), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 89/149 (59%), Positives = 115/149 (77%), Gaps = 3/149 (2%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
             +TSVD++V W R+ SL  +T+GLACC +EMM +   RYD +RFG   RASPRQ+DVMI
Sbjct: 16  IALTSVDKIVNWGRSNSLWALTYGLACCGIEMMASGASRYDFDRFGTIFRASPRQADVMI 75

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGTLT K A  ++R+YDQM EPR+VISMGSCAN GG ++ +Y+ V+GCDRI+PVD+Y+P
Sbjct: 76  VAGTLTKKHAEFIKRLYDQMTEPRWVISMGSCANTGGMFN-TYATVQGCDRIIPVDLYLP 134

Query: 158 GCPPTAEALIYGILLLQKKIR--RVGNVK 184
           GC P  E L YG++LLQKKIR  + GN +
Sbjct: 135 GCAPRPETLQYGVMLLQKKIRANKAGNAQ 163


>gi|225872572|ref|YP_002754027.1| NADH dehydrogenase I, B subunit [Acidobacterium capsulatum ATCC
           51196]
 gi|225792841|gb|ACO32931.1| NADH dehydrogenase I, B subunit [Acidobacterium capsulatum ATCC
           51196]
          Length = 186

 Score =  220 bits (562), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 75/149 (50%), Positives = 107/149 (71%), Gaps = 2/149 (1%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQ 92
             +G  +T++D  + W R  S+  MTFGLACCA+EMM     R+D+ RFG    R SPRQ
Sbjct: 29  QPEGVFLTTLDSAINWVRKSSIWPMTFGLACCAIEMMSMGASRFDVARFGAEVFRPSPRQ 88

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           +D+M++AG ++ KMA  +RR+YDQMPEP++VISMG+CA  GG ++  Y++++G ++++PV
Sbjct: 89  ADLMVIAGRVSQKMAPVIRRLYDQMPEPKWVISMGACATSGGVFNN-YALLQGVNQVIPV 147

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVG 181
           DIYVPGCPP  E LIY   LLQ+KI+   
Sbjct: 148 DIYVPGCPPRPEQLIYAFTLLQEKIQNER 176


>gi|254456709|ref|ZP_05070137.1| NADH dehydrogenase i chain b [Campylobacterales bacterium GD 1]
 gi|207085501|gb|EDZ62785.1| NADH dehydrogenase i chain b [Campylobacterales bacterium GD 1]
          Length = 169

 Score =  220 bits (562), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 84/141 (59%), Positives = 110/141 (78%), Gaps = 1/141 (0%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
             +TS+D++V W R+ SL  +T+GLACC +EMM +   RYD +RFG   RASPRQ+DVMI
Sbjct: 16  VALTSIDKIVNWGRSNSLWALTYGLACCGIEMMASGASRYDFDRFGTIFRASPRQADVMI 75

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGTLT K A  ++R+YDQM EPR+VISMGSCAN GG ++ +Y+ V+G DRI+PVD+Y+P
Sbjct: 76  VAGTLTKKHAEFIKRLYDQMTEPRWVISMGSCANTGGMFN-TYATVQGVDRIIPVDLYLP 134

Query: 158 GCPPTAEALIYGILLLQKKIR 178
           GC P  E L YG++LLQ+KIR
Sbjct: 135 GCAPRPETLQYGVMLLQQKIR 155


>gi|902226|emb|CAA60290.1| ndhK [Zea mays]
          Length = 248

 Score =  220 bits (562), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 68/154 (44%), Positives = 103/154 (66%), Gaps = 1/154 (0%)

Query: 28  RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
            +  + +    + T+ + L  W+R  SL  + +G +CC +E       R+D +R+G  PR
Sbjct: 28  PLLDQTSSNSVISTTPNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 87

Query: 88  ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146
           +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG 
Sbjct: 88  SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 147

Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           D+++PVD+Y+PGCPP  EA+I  +  L+KKI R 
Sbjct: 148 DKLIPVDVYLPGCPPKPEAVIDALTKLRKKIARE 181


>gi|12427|emb|CAA35482.1| unnamed protein product [Zea mays]
 gi|552735|gb|AAA84484.1| PSII-G [Zea mays]
 gi|48478677|gb|AAT44697.1| NADH dehydrogenase subunit K [Saccharum hybrid cultivar SP80-3280]
 gi|49659516|dbj|BAD27297.1| NADH dehydrogenase 27kD subunit [Saccharum hybrid cultivar NCo 310]
 gi|118201130|gb|ABK79500.1| NADH-plastoquinone oxidoreductase subunit K [Sorghum bicolor]
          Length = 248

 Score =  220 bits (562), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 68/154 (44%), Positives = 103/154 (66%), Gaps = 1/154 (0%)

Query: 28  RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
            +  + +    + T+ + L  W+R  SL  + +G +CC +E       R+D +R+G  PR
Sbjct: 28  PLLDQTSSNSVISTTPNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 87

Query: 88  ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146
           +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG 
Sbjct: 88  SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 147

Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           D+++PVD+Y+PGCPP  EA+I  +  L+KKI R 
Sbjct: 148 DKLIPVDVYLPGCPPKPEAVIDALTKLRKKIARE 181


>gi|313199706|ref|YP_004021320.1| NADH-plastoquinone oxidoreductase subunit K [Theobroma cacao]
 gi|309321270|gb|ADO64813.1| NADH-plastoquinone oxidoreductase subunit K [Theobroma cacao]
 gi|328924787|gb|ADO64894.2| NADH-plastoquinone oxidoreductase subunit K [Theobroma cacao]
          Length = 225

 Score =  220 bits (562), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 70/154 (45%), Positives = 103/154 (66%), Gaps = 1/154 (0%)

Query: 28  RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
            +    T    + T+++ L  W+R  SL  + +G +CC +E       R+D +R+G  PR
Sbjct: 7   PLLDRTTQNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66

Query: 88  ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146
           +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG 
Sbjct: 67  SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126

Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           D+++PVD+Y+PGCPP  EA+I  I  L+KKI R 
Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 160


>gi|237751580|ref|ZP_04582060.1| NADH dehydrogenase subunit I B [Helicobacter bilis ATCC 43879]
 gi|229372946|gb|EEO23337.1| NADH dehydrogenase subunit I B [Helicobacter bilis ATCC 43879]
          Length = 169

 Score =  220 bits (562), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 85/156 (54%), Positives = 115/156 (73%), Gaps = 3/156 (1%)

Query: 31  SEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88
            E++ +G    + SVD+++ W R+ SL  +T+GLACCA+EMM     R+D +RFG   RA
Sbjct: 7   GELSPRGMPVALGSVDKILNWGRSNSLWPLTYGLACCAIEMMATGGSRFDFDRFGIIFRA 66

Query: 89  SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 148
           SPRQSDVMI+AGTLT K A   RR+YDQMPEP++V+SMGSCAN GG ++ +Y+ V+G DR
Sbjct: 67  SPRQSDVMIIAGTLTKKHAEFTRRLYDQMPEPKWVVSMGSCANTGGMFN-TYATVQGVDR 125

Query: 149 IVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           I+PVDIY+PGC P  E L Y +++LQ+KIR    +K
Sbjct: 126 IIPVDIYLPGCAPRPETLQYAMMVLQQKIRSEKAIK 161


>gi|154795217|ref|NP_054940.3| NADH dehydrogenase subunit K [Spinacia oleracea]
 gi|218512134|sp|Q9M3M0|NDHK_SPIOL RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
          Length = 227

 Score =  220 bits (562), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 71/154 (46%), Positives = 103/154 (66%), Gaps = 1/154 (0%)

Query: 28  RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
            +  +I     + T+ + L  W+R  SL  + +G +CC +E       R+D +R+G  PR
Sbjct: 7   PLLDQIAQNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66

Query: 88  ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146
           ASPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG 
Sbjct: 67  ASPRQADLILTAGTVTMKMAPSLLRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126

Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           D+++PVD+Y+PGCPP  EA+I  I  L+KKI R 
Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 160


>gi|91208905|ref|YP_538939.1| NADH dehydrogenase subunit K [Gossypium hirsutum]
 gi|119368503|ref|YP_913191.1| NADH dehydrogenase 27kD subunit [Gossypium barbadense]
 gi|325210934|ref|YP_004286008.1| NADH-plastoquinone oxidoreductase subunit K [Gossypium thurberi]
 gi|122201392|sp|Q2L909|NDHK_GOSHI RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
 gi|218527889|sp|A0ZZ39|NDHK_GOSBA RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
 gi|85687419|gb|ABC73631.1| NADH-plastoquinone oxidoreductase subunit K [Gossypium hirsutum]
 gi|119224865|dbj|BAF41251.1| NADH dehydrogenase 27kD subunit [Gossypium barbadense]
 gi|290775796|gb|ADD62292.1| NADH-plastoquinone oxidoreductase subunit K [Gossypium thurberi]
          Length = 225

 Score =  220 bits (562), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 70/154 (45%), Positives = 103/154 (66%), Gaps = 1/154 (0%)

Query: 28  RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
            +    T    + T+++ L  W+R  SL  + +G +CC +E       R+D +R+G  PR
Sbjct: 7   PLLDRTTQNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66

Query: 88  ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146
           +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG 
Sbjct: 67  SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126

Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           D+++PVD+Y+PGCPP  EA+I  I  L+KKI R 
Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 160


>gi|320161226|ref|YP_004174450.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit family protein
           [Anaerolinea thermophila UNI-1]
 gi|319995079|dbj|BAJ63850.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit family protein
           [Anaerolinea thermophila UNI-1]
          Length = 217

 Score =  220 bits (562), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 79/164 (48%), Positives = 117/164 (71%), Gaps = 2/164 (1%)

Query: 18  SLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRY 77
             E++ +    I  E+ ++   VT++D++  W+R  SL  M FGLACCA+EM+  +  R+
Sbjct: 2   PNEELHSPGYEIPPEMQNQ-VTVTTLDRIYNWSRKNSLWPMMFGLACCAIEMIATAASRF 60

Query: 78  DLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY 136
           D  RFG    R SPRQ+DVMIV+GT+T KM   + R+Y+QMPEP+YV++MG+CA+GGG +
Sbjct: 61  DFSRFGMEVMRPSPRQADVMIVSGTVTKKMVPQIVRLYNQMPEPKYVVAMGACASGGGPF 120

Query: 137 HYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
              Y+VV G D+ +PVD+Y+PGCPPT +AL+ G+++LQKK+ R 
Sbjct: 121 KEGYNVVSGIDKFIPVDVYIPGCPPTPQALLNGLIMLQKKVERE 164


>gi|78211756|ref|YP_380535.1| NADH dehydrogenase subunit B [Synechococcus sp. CC9605]
 gi|123578940|sp|Q3AN52|NDHK_SYNSC RecName: Full=NAD(P)H-quinone oxidoreductase subunit K; AltName:
           Full=NAD(P)H dehydrogenase I subunit K; AltName:
           Full=NDH-1 subunit K; Short=NDH-K
 gi|78196215|gb|ABB33980.1| NADH-quinone oxidoreductase, B subunit [Synechococcus sp. CC9605]
          Length = 246

 Score =  220 bits (562), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 71/152 (46%), Positives = 104/152 (68%), Gaps = 1/152 (0%)

Query: 27  SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP 86
           +   +    +  ++TS+D L  WAR  SL  + +G ACC +E       R+D +RFG  P
Sbjct: 25  APTVTNDLSENVILTSLDDLHNWARLSSLWPLLYGTACCFIEFAALLGSRFDFDRFGLVP 84

Query: 87  RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRG 145
           R+SPRQ+D++IVAGT+T KMA AL R+Y+QMPEP+YVI+MG+C   GG +   S + VRG
Sbjct: 85  RSSPRQADLLIVAGTVTMKMAPALVRLYEQMPEPKYVIAMGACTITGGMFSADSTTAVRG 144

Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
            D+++PVD+Y+PGCPP  EA+   ++ L+KK+
Sbjct: 145 VDKLIPVDLYLPGCPPRPEAIFDAVIKLRKKV 176


>gi|197359653|gb|ACH69868.1| NADH-plastoquinone oxidoreductase subunit K [Aneura sp. Shaw 702]
          Length = 232

 Score =  220 bits (562), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 70/152 (46%), Positives = 104/152 (68%), Gaps = 1/152 (0%)

Query: 30  SSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS 89
           S +      ++T+++    WAR  SL  + +G +CC +E       R+D +R+G  PR+S
Sbjct: 9   SDKTVTDSIILTTLNDFSNWARLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSS 68

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGCDR 148
           PRQ+D++I AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SY+ VRG D+
Sbjct: 69  PRQADLVITAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYTTVRGVDK 128

Query: 149 IVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           ++PVDIY+PGCPP  EA+I  I+ L+K+I R 
Sbjct: 129 LIPVDIYLPGCPPRPEAVIDAIIKLRKRIARE 160


>gi|139390352|ref|YP_001122950.1| photosystem II G protein [Aethionema cordifolium]
 gi|218527879|sp|A4QJB9|NDHK_AETCO RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
 gi|134286145|dbj|BAF49774.1| photosystem II G protein [Aethionema cordifolium]
          Length = 229

 Score =  220 bits (562), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 70/154 (45%), Positives = 103/154 (66%), Gaps = 1/154 (0%)

Query: 28  RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
            +    T    + T+++ L  W+R  SL  + +G +CC +E       R+D +R+G  PR
Sbjct: 7   PVLDRTTKNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66

Query: 88  ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146
           +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG 
Sbjct: 67  SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126

Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           D+++PVD+Y+PGCPP  EA+I  I  L+KKI R 
Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKIARE 160


>gi|290489704|gb|ADD31236.1| NADH-plastoquinone oxidoreductase subunit K protein [Antirrhinum
           majus]
          Length = 254

 Score =  220 bits (561), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 69/154 (44%), Positives = 102/154 (66%), Gaps = 1/154 (0%)

Query: 28  RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
            +         + T+++ L  W+R  SL  + +G +CC +E       R+D +R+G  PR
Sbjct: 36  PLLDRTAENSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 95

Query: 88  ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146
           +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG 
Sbjct: 96  SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 155

Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           D+++PVD+Y+PGCPP  EA+I  I  L+KKI R 
Sbjct: 156 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 189


>gi|154795229|ref|YP_001023705.2| NADH dehydrogenase subunit K [Angiopteris evecta]
          Length = 232

 Score =  220 bits (561), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 68/151 (45%), Positives = 102/151 (67%), Gaps = 1/151 (0%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP 90
            +      + T+++    WAR  SL  + +G +CC +E       R+D +R+G  PR+SP
Sbjct: 10  DKNMSNSIISTNLNDFSNWARLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSP 69

Query: 91  RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGCDRI 149
           RQ+D++I AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D++
Sbjct: 70  RQADLIITAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGIDKL 129

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           +PVD+Y+PGCPP  EA+I  I+ L+KK+ + 
Sbjct: 130 IPVDVYLPGCPPKPEAIIDAIIKLRKKVAQE 160


>gi|218176248|ref|YP_002364505.1| NADH-plastoquinone oxidoreductase subunit K [Festuca arundinacea]
 gi|215882332|gb|ACJ70762.1| NADH-plastoquinone oxidoreductase subunit K [Festuca arundinacea]
          Length = 246

 Score =  220 bits (561), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 68/154 (44%), Positives = 103/154 (66%), Gaps = 1/154 (0%)

Query: 28  RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
            +  + +    + T+ + L  W+R  SL  + +G +CC +E       R+D +R+G  PR
Sbjct: 28  PLLDQNSSNSVISTTPNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 87

Query: 88  ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146
           +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG 
Sbjct: 88  SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 147

Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           D+++PVD+Y+PGCPP  EA+I  +  L+KKI R 
Sbjct: 148 DKLIPVDVYLPGCPPKPEAVIDALTKLRKKISRE 181


>gi|194033153|ref|YP_002000491.1| NADH dehydrogenase subunit K [Brachypodium distachyon]
 gi|193075561|gb|ACF08644.1| NADH dehydrogenase 27kDa subunit [Brachypodium distachyon]
          Length = 245

 Score =  220 bits (561), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 68/154 (44%), Positives = 103/154 (66%), Gaps = 1/154 (0%)

Query: 28  RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
            +  + +    + T+ + L  W+R  SL  + +G +CC +E       R+D +R+G  PR
Sbjct: 27  PLLDQTSSNSVISTTPNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 86

Query: 88  ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146
           +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG 
Sbjct: 87  SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 146

Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           D+++PVD+Y+PGCPP  EA+I  +  L+KKI R 
Sbjct: 147 DKLIPVDVYLPGCPPKPEAVIDALTKLRKKISRE 180


>gi|154795219|ref|YP_740121.2| NADH-plastoquinone oxidoreductase subunit K [Daucus carota]
 gi|218527898|sp|Q0G9V8|NDHK_DAUCA RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
          Length = 225

 Score =  220 bits (561), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 70/154 (45%), Positives = 102/154 (66%), Gaps = 1/154 (0%)

Query: 28  RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
            +    T    + T+ + L  W+R  SL  + +G +CC +E       R+D +R+G  PR
Sbjct: 7   PLLDRTTQNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66

Query: 88  ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146
           +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG 
Sbjct: 67  SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTISGGMFSTDSYSTVRGV 126

Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           D+++PVD+Y+PGCPP  EA+I  I  L+KKI R 
Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 160


>gi|80750929|dbj|BAE48005.1| NADH dehydrogenase 27kD subunit [Nicotiana tomentosiformis]
          Length = 284

 Score =  220 bits (561), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 69/160 (43%), Positives = 105/160 (65%), Gaps = 1/160 (0%)

Query: 22  VDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLER 81
           +++    +         + T+++ L  W+R  SL  + +G +CC +E       R+D +R
Sbjct: 60  MNSIQFPLLDRTAQNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDR 119

Query: 82  FGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSY 140
           +G  PR+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SY
Sbjct: 120 YGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSY 179

Query: 141 SVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           S VRG D+++PVD+Y+PGCPP  EA+I  I  L+KKI R 
Sbjct: 180 STVRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 219


>gi|322435876|ref|YP_004218088.1| NADH-quinone oxidoreductase, B subunit [Acidobacterium sp.
           MP5ACTX9]
 gi|321163603|gb|ADW69308.1| NADH-quinone oxidoreductase, B subunit [Acidobacterium sp.
           MP5ACTX9]
          Length = 205

 Score =  220 bits (561), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 80/153 (52%), Positives = 111/153 (72%), Gaps = 3/153 (1%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQ 92
             +G ++ S+D  + W R  S+  MTFGLACCA+EMM     RYD+ RFG    R SPRQ
Sbjct: 48  QPEGIVLASLDAAINWVRKNSVWPMTFGLACCAIEMMSMGGSRYDIARFGAEVFRPSPRQ 107

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           SD+MI+AG ++ KMA  +RR+Y+QMPEP++VISMG+CA  GG ++  Y++++G ++I+PV
Sbjct: 108 SDLMIIAGRVSQKMAPVIRRLYEQMPEPKWVISMGACATSGGVFNN-YALLQGVNQIIPV 166

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIR-RVGNVK 184
           DIYVPGCPP  E L+Y I LLQ+KI+   G V+
Sbjct: 167 DIYVPGCPPRPEQLLYAITLLQEKIQSERGTVR 199


>gi|260076082|gb|ACX30960.1| NADH dehydrogenase subunit 10 [Euplotes minuta]
          Length = 167

 Score =  220 bits (561), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 96/140 (68%), Positives = 122/140 (87%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           +LVT +  +V W+R+GS+  +TFGLACCAVEMM ++M RYDL+RFG   RASPR SD++I
Sbjct: 9   WLVTKLQTMVNWSRSGSIWPLTFGLACCAVEMMHSAMSRYDLDRFGMIFRASPRHSDLII 68

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           +AGTLTNKMA  LRR+++QM EP++++SMGSCANGGGYYHYSY+VVRG +RIVPVD+YVP
Sbjct: 69  IAGTLTNKMAPTLRRLFEQMQEPKFILSMGSCANGGGYYHYSYAVVRGAERIVPVDMYVP 128

Query: 158 GCPPTAEALIYGILLLQKKI 177
           GCPPTAEALI+G+L LQ K+
Sbjct: 129 GCPPTAEALIFGLLQLQGKV 148


>gi|218527902|sp|Q8S8X1|NDHK_ATRBE RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
          Length = 225

 Score =  220 bits (561), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 69/160 (43%), Positives = 105/160 (65%), Gaps = 1/160 (0%)

Query: 22  VDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLER 81
           +++    +         + T+++ L  W+R  SL  + +G +CC +E       R+D +R
Sbjct: 1   MNSIQFPLLDRTAQNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDR 60

Query: 82  FGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSY 140
           +G  PR+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SY
Sbjct: 61  YGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSY 120

Query: 141 SVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           S VRG D+++PVD+Y+PGCPP  EA+I  I  L+KKI R 
Sbjct: 121 STVRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 160


>gi|78778022|ref|YP_394337.1| NADH dehydrogenase subunit B [Sulfurimonas denitrificans DSM 1251]
 gi|123549715|sp|Q30PH9|NUOB_SULDN RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|78498562|gb|ABB45102.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit [Sulfurimonas
           denitrificans DSM 1251]
          Length = 169

 Score =  220 bits (561), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 86/147 (58%), Positives = 111/147 (75%), Gaps = 1/147 (0%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
             +TS+D++V W R+ SL  MT+GLACC +EMM +   RYD +RFG   RASPRQSDVMI
Sbjct: 16  VALTSIDKIVNWGRSNSLWAMTYGLACCGIEMMASGASRYDFDRFGTIFRASPRQSDVMI 75

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGTLT K A  ++R+YDQM EP++VISMGSCAN GG ++ +Y+ V+G DRI+PVD+Y+P
Sbjct: 76  VAGTLTKKHAEFIKRLYDQMTEPKWVISMGSCANTGGMFN-TYATVQGVDRIIPVDLYLP 134

Query: 158 GCPPTAEALIYGILLLQKKIRRVGNVK 184
           GC P  E L YG++LLQKKIR     +
Sbjct: 135 GCAPRPETLQYGVMLLQKKIRANKASR 161


>gi|218527903|sp|B3TN55|NDHK_BRADI RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
          Length = 225

 Score =  220 bits (561), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 68/154 (44%), Positives = 103/154 (66%), Gaps = 1/154 (0%)

Query: 28  RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
            +  + +    + T+ + L  W+R  SL  + +G +CC +E       R+D +R+G  PR
Sbjct: 7   PLLDQTSSNSVISTTPNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66

Query: 88  ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146
           +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG 
Sbjct: 67  SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126

Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           D+++PVD+Y+PGCPP  EA+I  +  L+KKI R 
Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDALTKLRKKISRE 160


>gi|52220814|ref|YP_086970.1| NADH dehydrogenase subunit K [Panax ginseng]
 gi|75254105|sp|Q68S02|NDHK_PANGI RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
 gi|51235317|gb|AAT98513.1| NADH dehydrogenase 32 kDa subunit [Panax ginseng]
          Length = 225

 Score =  220 bits (561), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 70/154 (45%), Positives = 102/154 (66%), Gaps = 1/154 (0%)

Query: 28  RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
            +    T    + T+ + L  W+R  SL  + +G +CC +E       R+D +R+G  PR
Sbjct: 7   PLLDRTTQNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66

Query: 88  ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146
           +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG 
Sbjct: 67  SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTISGGMFSTDSYSTVRGV 126

Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           D+++PVD+Y+PGCPP  EA+I  I  L+KKI R 
Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 160


>gi|139389646|ref|YP_001123203.1| photosystem II G protein [Arabis hirsuta]
 gi|218527883|sp|A4QK22|NDHK_ARAHI RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
 gi|134286401|dbj|BAF50027.1| photosystem II G protein [Arabis hirsuta]
          Length = 225

 Score =  220 bits (561), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 70/154 (45%), Positives = 103/154 (66%), Gaps = 1/154 (0%)

Query: 28  RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
            +    T    + T+++ L  W+R  SL  + +G +CC +E       R+D +R+G  PR
Sbjct: 7   PVLDRTTKNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66

Query: 88  ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146
           +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG 
Sbjct: 67  SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126

Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           D+++PVD+Y+PGCPP  EA+I  I  L+KKI R 
Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKIARE 160


>gi|194336921|ref|YP_002018715.1| NADH-quinone oxidoreductase, B subunit [Pelodictyon
           phaeoclathratiforme BU-1]
 gi|238065188|sp|B4SBZ2|NUOB_PELPB RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|194309398|gb|ACF44098.1| NADH-quinone oxidoreductase, B subunit [Pelodictyon
           phaeoclathratiforme BU-1]
          Length = 189

 Score =  220 bits (561), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 88/147 (59%), Positives = 112/147 (76%), Gaps = 1/147 (0%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           IT    L+TSVD ++ WAR  SL  M FGLACCA+EMM  +   YDLERFG  PR+SPRQ
Sbjct: 8   ITQHNVLITSVDNVLNWARLSSLWPMGFGLACCAIEMMATNASNYDLERFGIFPRSSPRQ 67

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVP 151
           SD+MIVAGT+T KMA  + R+Y+QMPEPRYV+SMGSC+N GG Y    Y V++G DR++P
Sbjct: 68  SDLMIVAGTVTMKMAERVIRLYEQMPEPRYVLSMGSCSNCGGPYWEHGYHVLKGVDRVIP 127

Query: 152 VDIYVPGCPPTAEALIYGILLLQKKIR 178
           VD++VPGCPP  E+LI G++ +Q+ IR
Sbjct: 128 VDVFVPGCPPRPESLIGGLMKVQELIR 154


>gi|156598395|gb|ABU85457.1| NADH-plastoquinone oxidoreductase subunit K [Musa acuminata]
          Length = 284

 Score =  220 bits (561), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 69/154 (44%), Positives = 103/154 (66%), Gaps = 1/154 (0%)

Query: 28  RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
            +  +      + T+++ L  W+R  SL  + +G +CC +E       R+D +R+G  PR
Sbjct: 66  PLVDKTITNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 125

Query: 88  ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146
           +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG 
Sbjct: 126 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 185

Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           D+++PVD+Y+PGCPP  EA+I  I  L+KKI R 
Sbjct: 186 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 219


>gi|15606518|ref|NP_213898.1| NADH dehydrogenase I chain B [Aquifex aeolicus VF5]
 gi|6647653|sp|O67334|NUOB_AQUAE RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|2983736|gb|AAC07297.1| NADH dehydrogenase I chain B [Aquifex aeolicus VF5]
          Length = 179

 Score =  220 bits (561), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 83/152 (54%), Positives = 114/152 (75%), Gaps = 1/152 (0%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           I   GF+ T+V++L+ W R  SL  +T GLACCA+EMM  +  R+DL+R G   RASPRQ
Sbjct: 4   INSNGFVTTTVEELLRWGRRNSLWPVTIGLACCAIEMMHTAASRFDLDRLGVIFRASPRQ 63

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           +DV+IVAGT+ NK+A  L+ ++DQMP+P++ ISMG CA+ GG +  +YS ++G DRI+PV
Sbjct: 64  ADVLIVAGTVVNKVAPMLKLIWDQMPDPKWCISMGGCASAGGPFP-TYSTLQGVDRIIPV 122

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           D+Y+PGCPPT + LIYGIL LQ+KI+  G  K
Sbjct: 123 DVYIPGCPPTPQGLIYGILQLQRKIKEQGITK 154


>gi|224437358|ref|ZP_03658330.1| NADH dehydrogenase subunit B [Helicobacter cinaedi CCUG 18818]
 gi|313143821|ref|ZP_07806014.1| NADH dehydrogenase subunit B [Helicobacter cinaedi CCUG 18818]
 gi|313128852|gb|EFR46469.1| NADH dehydrogenase subunit B [Helicobacter cinaedi CCUG 18818]
          Length = 169

 Score =  220 bits (561), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 82/146 (56%), Positives = 113/146 (77%), Gaps = 1/146 (0%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
             ++SVD+L+ W R+ SL  +T+GLACCA+EMM     R+DL+RFG   RASPRQ+D+MI
Sbjct: 16  IALSSVDKLLNWGRSNSLWGLTYGLACCAIEMMATGGSRFDLDRFGTIFRASPRQADLMI 75

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           ++GT+T K A  +RR+YDQMPEP++VISMGSCAN GG ++ +YS V+G DRI+PVDIY+P
Sbjct: 76  ISGTVTKKHAEFVRRLYDQMPEPKWVISMGSCANTGGMFN-TYSTVQGVDRIIPVDIYLP 134

Query: 158 GCPPTAEALIYGILLLQKKIRRVGNV 183
           GC P  E L Y +++LQ+KIR+   +
Sbjct: 135 GCAPRPETLQYAVMVLQQKIRKQKAI 160


>gi|11837|emb|CAA77357.1| NADH dehydrogenase 27kD subunit [Nicotiana tabacum]
 gi|77799566|dbj|BAE46655.1| NADH dehydrogenase 27kD subunit [Nicotiana sylvestris]
 gi|225205|prf||1211235AK bhpB gene
          Length = 284

 Score =  220 bits (561), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 70/160 (43%), Positives = 106/160 (66%), Gaps = 1/160 (0%)

Query: 22  VDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLER 81
           +++    +    T    + T+++ L  W+R  SL  + +G +CC +E       R+D +R
Sbjct: 60  MNSIQFPLLDRTTQNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDR 119

Query: 82  FGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSY 140
           +G  PR+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SY
Sbjct: 120 YGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSY 179

Query: 141 SVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           S VRG D+++PVD+Y+PGCPP  EA+I  I  L+KKI R 
Sbjct: 180 STVRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 219


>gi|139389100|ref|YP_001123818.1| NADH dehydrogenase subunit K [Nasturtium officinale]
 gi|218527914|sp|A4QLT7|NDHK_NASOF RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
 gi|134287023|dbj|BAF50642.1| photosystem II G protein [Nasturtium officinale]
          Length = 225

 Score =  220 bits (561), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 70/154 (45%), Positives = 103/154 (66%), Gaps = 1/154 (0%)

Query: 28  RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
            +    T    + T+++ L  W+R  SL  + +G +CC +E       R+D +R+G  PR
Sbjct: 7   PVLDRTTKNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66

Query: 88  ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146
           +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG 
Sbjct: 67  SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126

Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           D+++PVD+Y+PGCPP  EA+I  I  L+KKI R 
Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKIARE 160


>gi|1019632|gb|AAA79257.1| photosystem II protein G [Paramecium aurelia]
          Length = 156

 Score =  220 bits (561), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 97/152 (63%), Positives = 124/152 (81%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           I    FL  S + L++WAR GS   +TFGLACCA+EMM A++ RYD +RFG   RA+PRQ
Sbjct: 2   ILKADFLKLSANNLISWARQGSFWPLTFGLACCALEMMHATVSRYDFDRFGVIFRATPRQ 61

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           +D++IVAGT+TNKMA ALRR+YDQ  +P++V+SMGSCANGGGYYHYSY+VV+GCD+I+PV
Sbjct: 62  ADLIIVAGTVTNKMAPALRRLYDQTADPKWVLSMGSCANGGGYYHYSYAVVKGCDKIIPV 121

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           DI+VPGCPPTAEAL +G+L LQK + +  N K
Sbjct: 122 DIFVPGCPPTAEALFFGVLQLQKTLMKTINEK 153


>gi|139390156|ref|YP_001123729.1| NADH dehydrogenase subunit K [Lobularia maritima]
 gi|218527911|sp|A4QLJ8|NDHK_LOBMA RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
 gi|134286933|dbj|BAF50553.1| photosystem II G protein [Lobularia maritima]
          Length = 225

 Score =  220 bits (561), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 70/154 (45%), Positives = 103/154 (66%), Gaps = 1/154 (0%)

Query: 28  RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
            +    T    + T+++ L  W+R  SL  + +G +CC +E       R+D +R+G  PR
Sbjct: 7   PVLDRTTKNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66

Query: 88  ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146
           +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG 
Sbjct: 67  SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126

Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           D+++PVD+Y+PGCPP  EA+I  I  L+KKI R 
Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKIARE 160


>gi|33864744|ref|NP_896303.1| NADH dehydrogenase subunit B [Synechococcus sp. WH 8102]
 gi|81575356|sp|Q7U9P5|NDHK_SYNPX RecName: Full=NAD(P)H-quinone oxidoreductase subunit K; AltName:
           Full=NAD(P)H dehydrogenase I subunit K; AltName:
           Full=NDH-1 subunit K; Short=NDH-K
 gi|33632267|emb|CAE06723.1| NADH dehydrogenase I chain B or NdhK [Synechococcus sp. WH 8102]
          Length = 246

 Score =  220 bits (561), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 71/145 (48%), Positives = 102/145 (70%), Gaps = 1/145 (0%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
             +  ++TS+D L  WAR  SL  + +G ACC +E       R+D +RFG  PR+SPRQ+
Sbjct: 32  LSENVILTSLDDLHNWARLSSLWPLLYGTACCFIEFAALLGSRFDFDRFGLVPRSSPRQA 91

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGCDRIVPV 152
           D++IVAGT+T KMA AL R+Y+QMPEP+YVI+MG+C   GG +   S + VRG D+++PV
Sbjct: 92  DLLIVAGTVTMKMAPALVRLYEQMPEPKYVIAMGACTITGGMFSADSTTAVRGVDKLIPV 151

Query: 153 DIYVPGCPPTAEALIYGILLLQKKI 177
           D+Y+PGCPP  EA+   ++ L+KK+
Sbjct: 152 DLYMPGCPPRPEAIFDAVIKLRKKV 176


>gi|154795230|ref|YP_567080.2| NADH dehydrogenase subunit K [Vitis vinifera]
 gi|218527949|sp|Q0ZJ16|NDHK_VITVI RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
          Length = 225

 Score =  220 bits (561), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 70/154 (45%), Positives = 102/154 (66%), Gaps = 1/154 (0%)

Query: 28  RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
            +    T    + T+ + L  W+R  SL  + +G +CC +E       R+D +R+G  PR
Sbjct: 7   PLLDRTTQNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66

Query: 88  ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146
           +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG 
Sbjct: 67  SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126

Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           D+++PVD+Y+PGCPP  EA+I  I  L+KKI R 
Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 160


>gi|39998533|ref|NP_954484.1| trifunctional NADH dehydrogenase I subunit B/C/D [Geobacter
           sulfurreducens PCA]
 gi|81700831|sp|Q746S4|NUBCD_GEOSL RecName: Full=NADH-quinone oxidoreductase subunit B/C/D; AltName:
           Full=NADH dehydrogenase I subunit B/C/D; AltName:
           Full=NDH-1 subunit B/C/D
 gi|39985480|gb|AAR36834.1| NADH dehydrogenase I, B/C/D subunits [Geobacter sulfurreducens PCA]
 gi|298507477|gb|ADI86200.1| NADH dehydrogenase I, B/C/D subunits [Geobacter sulfurreducens
           KN400]
          Length = 792

 Score =  220 bits (561), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 78/153 (50%), Positives = 110/153 (71%), Gaps = 2/153 (1%)

Query: 30  SSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RA 88
            +E+     ++ S+D L+ W R  SL  M FGL+CC VEMM +   RYD+ RFG    R 
Sbjct: 3   ETEVPQNNIILASLDDLINWGRANSLWPMFFGLSCCFVEMMTSFTSRYDVSRFGAEVLRG 62

Query: 89  SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 148
           +PR++D+M++AGT+  KMA ++ R+Y+QM EP++VISMGSCAN GG Y   YSVV+G ++
Sbjct: 63  TPREADLMVIAGTVFKKMAPSILRLYEQMAEPKWVISMGSCANSGGMY-DVYSVVQGVNQ 121

Query: 149 IVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
           I+PVD++VPGCPP  EA + G++LLQ+KIRR  
Sbjct: 122 IIPVDVHVPGCPPRPEAFLQGLMLLQEKIRREE 154


>gi|262400780|gb|ACY66269.1| NADH dehydrogenase subunit K [Brassica napus]
          Length = 225

 Score =  220 bits (561), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 70/154 (45%), Positives = 103/154 (66%), Gaps = 1/154 (0%)

Query: 28  RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
            +    T    + T+++ L  W+R  SL  + +G +CC +E       R+D +R+G  PR
Sbjct: 7   PVLDRTTKNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66

Query: 88  ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146
           +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG 
Sbjct: 67  SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126

Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           D+++PVD+Y+PGCPP  EA+I  I  L+KKI R 
Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKIARE 160


>gi|154795561|ref|NP_038400.2| NADH dehydrogenase subunit K [Mesostigma viride]
          Length = 223

 Score =  220 bits (561), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 70/159 (44%), Positives = 111/159 (69%), Gaps = 2/159 (1%)

Query: 27  SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP 86
            +++  ++++  ++T+++ L  WAR  SL  + +G +CC +E       R+D +RFG  P
Sbjct: 4   PQVTQNVSNQ-LILTTLNDLYNWARLSSLWPLLYGTSCCFIEFACLLGSRFDFDRFGLVP 62

Query: 87  RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRG 145
           R SPRQ+D++I AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG
Sbjct: 63  RCSPRQADLIITAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRG 122

Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
            D+++PVD+Y+PGCPP  EA+I  ++ L+KK+ +   V+
Sbjct: 123 VDKLIPVDVYLPGCPPKPEAIIDAVIKLRKKVAQENLVE 161


>gi|34556898|ref|NP_906713.1| NADH dehydrogenase subunit B [Wolinella succinogenes DSM 1740]
 gi|81653582|sp|Q7MA50|NUOB_WOLSU RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|34482613|emb|CAE09613.1| NADH DEHYDROGENASE I CHAIN B [Wolinella succinogenes]
          Length = 169

 Score =  220 bits (561), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 86/147 (58%), Positives = 113/147 (76%), Gaps = 1/147 (0%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
            ++T+VD LV W R+ SL  +T+GLACCA+EMM +   RYD +RFG   RASPRQ+DVMI
Sbjct: 16  VVLTTVDHLVNWGRSNSLWALTYGLACCAIEMMASGAGRYDFDRFGTIFRASPRQADVMI 75

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGTLT K A  +RR+YDQM EP++VISMGSCAN GG ++ +Y+ V+GCDRI+PVD+Y+P
Sbjct: 76  VAGTLTKKHAEFIRRLYDQMSEPKWVISMGSCANTGGMFN-TYATVQGCDRIIPVDVYLP 134

Query: 158 GCPPTAEALIYGILLLQKKIRRVGNVK 184
           GC P  E L Y +++LQ+KIRR    +
Sbjct: 135 GCAPRPETLQYAVMVLQQKIRREKASR 161


>gi|154795232|ref|YP_636543.2| NADH dehydrogenase subunit K [Zygnema circumcarinatum]
          Length = 248

 Score =  220 bits (561), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 66/153 (43%), Positives = 104/153 (67%), Gaps = 1/153 (0%)

Query: 30  SSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS 89
           + +  +   ++T++  +  W R  SL  + +G +CC +E       R+D +R+G  PR+S
Sbjct: 6   TKQNVYDSVVLTTLQDVSNWVRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSS 65

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGCDR 148
           PRQ+D++I AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+
Sbjct: 66  PRQADLIITAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDK 125

Query: 149 IVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
           ++PVD+Y+PGCPP  EA++  I+ L+KK+ +  
Sbjct: 126 LIPVDVYLPGCPPKPEAIVDAIIKLRKKVAQEN 158


>gi|147917399|gb|ABQ52523.1| NADH-plastoquinone oxidoreductase subunit K [Illicium oligandrum]
          Length = 283

 Score =  220 bits (561), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 69/153 (45%), Positives = 102/153 (66%), Gaps = 1/153 (0%)

Query: 29  ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88
           +    T    + T+ + L  W+R  SL  + +G +CC +E       R+D +R+G  PR+
Sbjct: 66  LLDRTTQNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRS 125

Query: 89  SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGCD 147
           SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D
Sbjct: 126 SPRQADIILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVD 185

Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           +++PVD+Y+PGCPP  EA+I  I  L+KK+ R 
Sbjct: 186 KLIPVDVYLPGCPPKPEAIIDAITKLRKKLSRE 218


>gi|1173548|gb|AAC44353.1| NADH dehydrogenase type 1 subunit [Nostoc sp. PCC 7120]
          Length = 245

 Score =  220 bits (561), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 73/168 (43%), Positives = 111/168 (66%), Gaps = 2/168 (1%)

Query: 12  SGQSSCSLEKVDADFSR-ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMM 70
           S  ++  +E++     R   ++   +  ++T+VD L  WAR  SL  + FG ACC +E  
Sbjct: 5   SDLTTQDIERIINPIERPTVTQDLSENVILTTVDDLYNWARLSSLWPLLFGTACCFIEFA 64

Query: 71  QASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCA 130
                R+D +RFG  PR+SPRQ+D++I AGT+T KMA  + R+Y++MPEP+YVI+MG+C 
Sbjct: 65  ALIGSRFDFDRFGLIPRSSPRQADLIITAGTITMKMAPQMVRLYEKMPEPKYVIAMGACT 124

Query: 131 NGGGYYH-YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
             GG +   S + VRG D+++PVD+Y+PGCPP  EA+I  ++ L+KKI
Sbjct: 125 ITGGMFSVESPTAVRGVDKLIPVDVYLPGCPPRPEAIIDAMIKLRKKI 172


>gi|7636113|emb|CAB88733.1| NADH dehydrogenase 32kDa subunit [Spinacia oleracea]
          Length = 281

 Score =  220 bits (561), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 74/173 (42%), Positives = 110/173 (63%), Gaps = 5/173 (2%)

Query: 13  GQSSCSLEKVDADFSRIS----SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVE 68
            + S   +K++   + I      +I     + T+ + L  W+R  SL  + +G +CC +E
Sbjct: 42  PEDSDKKKKIETVMNSIEFPLLDQIAQNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIE 101

Query: 69  MMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGS 128
                  R+D +R+G  PRASPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+
Sbjct: 102 FASLIGSRFDFDRYGLVPRASPRQADLILTAGTVTMKMAPSLLRLYEQMPEPKYVIAMGA 161

Query: 129 CANGGGYYH-YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           C   GG +   SYS VRG D+++PVD+Y+PGCPP  EA+I  I  L+KKI R 
Sbjct: 162 CTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 214


>gi|122893994|ref|YP_001004190.1| NADH-plastoquinone oxidoreductase subunit K [Ranunculus macranthus]
 gi|218527923|sp|A1XGP2|NDHK_RANMC RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
 gi|85540808|gb|ABC70760.1| NADH-plastoquinone oxidoreductase subunit K [Ranunculus macranthus]
          Length = 227

 Score =  220 bits (560), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 69/154 (44%), Positives = 104/154 (67%), Gaps = 1/154 (0%)

Query: 28  RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
            + ++ T    + T+ + L  W+R  SL  + +G +CC +E       R+D +R+G  PR
Sbjct: 7   PLLNQTTQNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66

Query: 88  ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146
           +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG 
Sbjct: 67  SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126

Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           D+++PVD+Y+PGCPP  EA+I  I  L+KK+ R 
Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKVSRE 160


>gi|317968579|ref|ZP_07969969.1| NADH dehydrogenase subunit B [Synechococcus sp. CB0205]
          Length = 249

 Score =  220 bits (560), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 70/145 (48%), Positives = 102/145 (70%), Gaps = 1/145 (0%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
             +  ++T++D L  WAR  SL  + +G ACC +E       R+D +RFG  PR+SPRQ+
Sbjct: 39  LSENVILTTLDDLHNWARLSSLWPLLYGTACCFIEFAALIGSRFDFDRFGLVPRSSPRQA 98

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGCDRIVPV 152
           D++IVAGT+T KMA AL R+Y+QMPEP+YVI+MG+C   GG +   S + VRG D+++PV
Sbjct: 99  DLLIVAGTVTMKMAPALVRLYEQMPEPKYVIAMGACTITGGMFSADSTTAVRGVDKLIPV 158

Query: 153 DIYVPGCPPTAEALIYGILLLQKKI 177
           D+Y+PGCPP  EA+   ++ L+KK+
Sbjct: 159 DLYLPGCPPRPEAIFDAVVKLRKKV 183


>gi|297837993|ref|XP_002886878.1| NADH dehydrogenase subunit K [Arabidopsis lyrata subsp. lyrata]
 gi|297332719|gb|EFH63137.1| NADH dehydrogenase subunit K [Arabidopsis lyrata subsp. lyrata]
          Length = 225

 Score =  220 bits (560), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 71/154 (46%), Positives = 104/154 (67%), Gaps = 1/154 (0%)

Query: 28  RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
            +    T K  + T+++ L  W+R  SL  + +G +CC +E       R+D +R+G  PR
Sbjct: 7   PVLDRTTKKSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66

Query: 88  ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146
           +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG 
Sbjct: 67  SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126

Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           D+++PVD+Y+PGCPP  EA+I  I  L+KKI R 
Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKIARE 160


>gi|290489732|gb|ADD31250.1| NADH-plastoquinone oxidoreductase subunit K protein [Ficus sp.
           Moore 315]
          Length = 253

 Score =  220 bits (560), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 70/154 (45%), Positives = 101/154 (65%), Gaps = 1/154 (0%)

Query: 28  RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
            +    T    + T+   L  W+R  SL  + +G +CC +E       R+D +R+G  PR
Sbjct: 35  PLLDRTTQNSVISTTSSDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 94

Query: 88  ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146
           +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG 
Sbjct: 95  SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 154

Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           D+++PVD+Y+PGCPP  EA+I  I  L+KKI R 
Sbjct: 155 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 188


>gi|114804269|ref|YP_762265.1| NADH-plastoquinone oxidoreductase subunit K [Morus indica]
 gi|78100321|gb|ABB20962.1| NADH-plastoquinone oxidoreductase subunit K [Morus indica]
          Length = 282

 Score =  220 bits (560), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 70/154 (45%), Positives = 101/154 (65%), Gaps = 1/154 (0%)

Query: 28  RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
            +    T    + T+   L  W+R  SL  + +G +CC +E       R+D +R+G  PR
Sbjct: 64  PLLDRTTQNSVISTTSSDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 123

Query: 88  ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146
           +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG 
Sbjct: 124 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 183

Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           D+++PVD+Y+PGCPP  EA+I  I  L+KKI R 
Sbjct: 184 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 217


>gi|154795253|ref|YP_001294274.2| NADH-plastoquinone oxidoreductase subunit K [Illicium oligandrum]
 gi|218527944|sp|A6MMU8|NDHK_ILLOL RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
          Length = 225

 Score =  220 bits (560), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 69/153 (45%), Positives = 102/153 (66%), Gaps = 1/153 (0%)

Query: 29  ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88
           +    T    + T+ + L  W+R  SL  + +G +CC +E       R+D +R+G  PR+
Sbjct: 8   LLDRTTQNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRS 67

Query: 89  SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGCD 147
           SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D
Sbjct: 68  SPRQADIILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVD 127

Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           +++PVD+Y+PGCPP  EA+I  I  L+KK+ R 
Sbjct: 128 KLIPVDVYLPGCPPKPEAIIDAITKLRKKLSRE 160


>gi|115391908|ref|YP_778496.1| NADH dehydrogenase subunit K [Jasminum nudiflorum]
 gi|122164967|sp|Q06RC5|NDHK_JASNU RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
 gi|110456229|gb|ABG74634.1| NADH dehydrogenase 32 kDa subunit [Jasminum nudiflorum]
 gi|110456646|gb|ABG74765.1| NADH dehydrogenase 32 kDa subunit [Jasminum leratii]
 gi|110456683|gb|ABG74792.1| NADH dehydrogenase 32 kDa subunit [Jasminum abyssinicum]
 gi|110456715|gb|ABG74818.1| NADH dehydrogenase 32 kDa subunit [Jasminum subhumile]
          Length = 213

 Score =  220 bits (560), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 69/154 (44%), Positives = 102/154 (66%), Gaps = 1/154 (0%)

Query: 28  RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
            +  +        T+++ L  W+R  SL  + +G +CC +E       R+D +R+G  PR
Sbjct: 7   PLLDQTVQNSVFSTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66

Query: 88  ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146
           +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG 
Sbjct: 67  SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126

Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           D+++PVD+Y+PGCPP  EA+I  I  L+KKI R 
Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 160


>gi|154795222|ref|YP_319769.3| NADH dehydrogenase subunit K [Acorus calamus]
 gi|161622314|ref|YP_001586186.1| NADH dehydrogenase subunit K [Acorus americanus]
 gi|218527878|sp|A9LYA5|NDHK_ACOAM RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
 gi|218527908|sp|Q3V530|NDHK_ACOCL RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
 gi|160369857|gb|ABX38748.1| NADH-plastoquinone oxidoreductase subunit K [Acorus americanus]
          Length = 239

 Score =  220 bits (560), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 69/154 (44%), Positives = 103/154 (66%), Gaps = 1/154 (0%)

Query: 28  RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
            +    T    + T+++ L  W+R  SL  + +G +CC +E       R+D +R+G  PR
Sbjct: 7   PLLDRTTPNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66

Query: 88  ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146
           +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG 
Sbjct: 67  SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126

Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           D+++PVD+Y+PGCPP  EA+I  I  L+KK+ R 
Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKLSRE 160


>gi|139388098|ref|YP_001123290.1| photosystem II G protein [Barbarea verna]
 gi|218527881|sp|A4QKA9|NDHK_BARVE RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
 gi|134286489|dbj|BAF50114.1| photosystem II G protein [Barbarea verna]
          Length = 225

 Score =  220 bits (560), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 70/154 (45%), Positives = 103/154 (66%), Gaps = 1/154 (0%)

Query: 28  RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
            +    T    + T+++ L  W+R  SL  + +G +CC +E       R+D +R+G  PR
Sbjct: 7   PVLDRTTKNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66

Query: 88  ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146
           +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG 
Sbjct: 67  SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126

Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           D+++PVD+Y+PGCPP  EA+I  I  L+KKI R 
Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKIARE 160


>gi|297585416|ref|YP_003701196.1| NADH-quinone oxidoreductase subunit B [Bacillus selenitireducens
           MLS10]
 gi|297143873|gb|ADI00631.1| NADH-quinone oxidoreductase, B subunit [Bacillus selenitireducens
           MLS10]
          Length = 175

 Score =  220 bits (560), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 86/153 (56%), Positives = 108/153 (70%)

Query: 26  FSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA 85
           +     E  +K    T VDQ+  W+RT S   ++FGLACCA+EMM     RYD +RFG  
Sbjct: 12  YDPRVMEDINKNVFFTKVDQIKAWSRTRSFWPLSFGLACCAIEMMATGGNRYDFDRFGVI 71

Query: 86  PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRG 145
            RASPR +DVMIVAGT+T KMA  LR +YDQMPEP++VI+MGSCA  GG Y  +YSV+ G
Sbjct: 72  FRASPRHADVMIVAGTVTGKMAPVLRTLYDQMPEPKWVIAMGSCATCGGPYKEAYSVLNG 131

Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
            D+IVPVD+YV GCPPT  AL+ G+  L++KIR
Sbjct: 132 VDKIVPVDVYVSGCPPTPPALLDGVERLREKIR 164


>gi|218527906|sp|A1EA12|NDHK_AGRST RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
          Length = 225

 Score =  220 bits (560), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 68/154 (44%), Positives = 103/154 (66%), Gaps = 1/154 (0%)

Query: 28  RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
            +  + +    + T+ + L  W+R  SL  + +G +CC +E       R+D +R+G  PR
Sbjct: 7   PLLDQTSSNSVISTTPNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66

Query: 88  ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146
           +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG 
Sbjct: 67  SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126

Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           D+++PVD+Y+PGCPP  EA+I  +  L+KKI R 
Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDALTKLRKKISRE 160


>gi|323149086|ref|YP_004222650.1| NADH-plastoquinone oxidoreductase subunit K [Anthriscus cerefolium]
 gi|289645579|gb|ADD13642.1| NADH-plastoquinone oxidoreductase subunit K [Anthriscus cerefolium]
          Length = 225

 Score =  220 bits (560), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 70/154 (45%), Positives = 102/154 (66%), Gaps = 1/154 (0%)

Query: 28  RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
            +    T    + T+ + L  W+R  SL  + +G +CC +E       R+D +R+G  PR
Sbjct: 7   PLLDRTTQNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66

Query: 88  ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146
           +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG 
Sbjct: 67  SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTISGGMFSTDSYSTVRGV 126

Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           D+++PVD+Y+PGCPP  EA+I  I  L+KKI R 
Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 160


>gi|290489734|gb|ADD31251.1| NADH-plastoquinone oxidoreductase subunit K protein [Gunnera
           manicata]
          Length = 283

 Score =  220 bits (560), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 70/154 (45%), Positives = 102/154 (66%), Gaps = 1/154 (0%)

Query: 28  RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
            +    T    + T+ + L  W+R  SL  + +G +CC +E       R+D +R+G  PR
Sbjct: 65  PLLDRTTQNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 124

Query: 88  ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146
           +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG 
Sbjct: 125 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 184

Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           D+++PVD+Y+PGCPP  EA+I  I  L+KKI R 
Sbjct: 185 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 218


>gi|66876455|gb|AAY58009.1| NdhK [Dinetus truncatus]
          Length = 224

 Score =  220 bits (560), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 69/160 (43%), Positives = 105/160 (65%), Gaps = 1/160 (0%)

Query: 22  VDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLER 81
           +++    +  +      + T+ + L  W+R  SL  + +G +CC +E       R+D +R
Sbjct: 1   MNSIQFPLLDQRAKNSVISTTFNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDR 60

Query: 82  FGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSY 140
           +G  PR+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SY
Sbjct: 61  YGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSY 120

Query: 141 SVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           S VRG D+++PVD+Y+PGCPP  EA+I  I  L+KKI R 
Sbjct: 121 STVRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 160


>gi|313903494|ref|ZP_07836885.1| NADH dehydrogenase subunit B [Thermaerobacter subterraneus DSM
           13965]
 gi|313466315|gb|EFR61838.1| NADH dehydrogenase subunit B [Thermaerobacter subterraneus DSM
           13965]
          Length = 193

 Score =  220 bits (560), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 83/145 (57%), Positives = 106/145 (73%)

Query: 37  GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVM 96
           G + T++  LV W R  SL ++ FG+ACCA+EMM A   R DL+R G   RASPRQ+D+M
Sbjct: 46  GVITTNLQTLVNWGRKNSLWYLLFGIACCAIEMMAAGASRIDLDRLGSVFRASPRQADMM 105

Query: 97  IVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV 156
           IVAGT+T KMA  ++ +YDQM EPRYVI+MG+CA+ GG Y+  Y+VV G D+IVPVD+YV
Sbjct: 106 IVAGTVTEKMAPVIKTLYDQMAEPRYVIAMGACASNGGPYYQGYNVVDGVDKIVPVDVYV 165

Query: 157 PGCPPTAEALIYGILLLQKKIRRVG 181
            GCPP  EALIY I+ LQ K+ R  
Sbjct: 166 AGCPPRPEALIYAIMKLQDKVARAN 190


>gi|295065732|ref|YP_003587672.1| NADH dehydrogenase subunit K [Anomochloa marantoidea]
 gi|251765256|gb|ACT15410.1| NADH dehydrogenase subunit K [Anomochloa marantoidea]
          Length = 222

 Score =  220 bits (560), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 69/154 (44%), Positives = 103/154 (66%), Gaps = 1/154 (0%)

Query: 28  RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
            +  + T    + T+ + L  W+R  SL  + +G +CC +E       R+D +R+G  PR
Sbjct: 7   PLLDQTTSNSVISTTPNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66

Query: 88  ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146
           +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG 
Sbjct: 67  SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126

Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           D+++PVD+Y+PGCPP  EA+I  +  L+KKI R 
Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDALTKLRKKISRE 160


>gi|228936583|ref|ZP_04099378.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
           [Bacillus thuringiensis serovar andalousiensis BGSC
           4AW1]
 gi|228823098|gb|EEM68935.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
           [Bacillus thuringiensis serovar andalousiensis BGSC
           4AW1]
          Length = 148

 Score =  220 bits (560), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 88/141 (62%), Positives = 108/141 (76%)

Query: 43  VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL 102
           ++QL  WAR+ SL  MTFGLACCA+EMM      YDL+RFG   R SPRQSDVMIV+GT+
Sbjct: 1   MEQLKGWARSNSLWPMTFGLACCAIEMMGVGSSHYDLDRFGSFFRTSPRQSDVMIVSGTV 60

Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162
           T KMA  +RR+YDQMPEP++VI+MGSCA  GG Y  SY+VV+G D+IVPVD+Y+PGCPP 
Sbjct: 61  TKKMAPIVRRLYDQMPEPKWVIAMGSCATAGGPYVNSYAVVKGVDQIVPVDVYIPGCPPN 120

Query: 163 AEALIYGILLLQKKIRRVGNV 183
             ALIYGI  L++KIR    +
Sbjct: 121 PAALIYGINKLKEKIRYEAKI 141


>gi|154795227|ref|NP_904103.3| NADH dehydrogenase subunit K [Amborella trichopoda]
 gi|218527907|sp|Q70XZ9|NDHK_AMBTC RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
          Length = 225

 Score =  220 bits (560), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 69/154 (44%), Positives = 102/154 (66%), Gaps = 1/154 (0%)

Query: 28  RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
            +    T    + T+ + L  W+R  SL  + +G +CC +E       R+D +R+G  PR
Sbjct: 7   PLLDRTTPNSVISTTPNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66

Query: 88  ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146
           +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG 
Sbjct: 67  SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126

Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           D+++PVD+Y+PGCPP  EA+I  I  L+KK+ R 
Sbjct: 127 DKLIPVDVYLPGCPPKPEAIIDAITKLRKKVSRE 160


>gi|290489712|gb|ADD31240.1| NADH-plastoquinone oxidoreductase subunit K protein [Ilex cornuta]
          Length = 225

 Score =  220 bits (560), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 70/160 (43%), Positives = 105/160 (65%), Gaps = 1/160 (0%)

Query: 22  VDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLER 81
           +++    +    T    + T+ + L  W+R  SL  + +G +CC +E       R+D +R
Sbjct: 1   MNSIQFPLLERTTQNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDR 60

Query: 82  FGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSY 140
           +G  PR+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SY
Sbjct: 61  YGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSY 120

Query: 141 SVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           S VRG D+++PVD+Y+PGCPP  EA+I  I  L+KKI R 
Sbjct: 121 STVRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 160


>gi|114329660|ref|YP_740479.1| NADH-plastoquinone oxidoreductase subunit K [Citrus sinensis]
 gi|122166179|sp|Q09MH4|NDHK_CITSI RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
 gi|113952626|gb|ABI49024.1| NADH-plastoquinone oxidoreductase subunit K [Citrus sinensis]
          Length = 227

 Score =  220 bits (560), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 71/153 (46%), Positives = 103/153 (67%), Gaps = 1/153 (0%)

Query: 29  ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88
           +    T   F+ T+ + L  W+R  SL  + +G +CC +E       R+D +R+G  PR+
Sbjct: 8   LLDRTTPNSFISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRS 67

Query: 89  SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGCD 147
           SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D
Sbjct: 68  SPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVD 127

Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           +++PVD+Y+PGCPP  EA+I  I  L+KKI R 
Sbjct: 128 KLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 160


>gi|154795224|ref|YP_054635.2| NADH dehydrogenase subunit K [Saccharum officinarum]
 gi|154795225|ref|YP_899411.2| NADH-plastoquinone oxidoreductase subunit K [Sorghum bicolor]
 gi|154795226|ref|NP_043029.2| NADH dehydrogenase subunit K [Zea mays]
 gi|154795254|ref|YP_024383.2| NADH dehydrogenase subunit K [Saccharum hybrid cultivar SP-80-3280]
 gi|242057527|ref|XP_002457909.1| hypothetical protein SORBIDRAFT_03g020200 [Sorghum bicolor]
 gi|218511709|sp|Q6L395|NDHK_SACHY RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
 gi|218511710|sp|Q6ENV9|NDHK_SACOF RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
 gi|218527954|sp|A1E9S8|NDHK_SORBI RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
 gi|241929884|gb|EES03029.1| hypothetical protein SORBIDRAFT_03g020200 [Sorghum bicolor]
          Length = 227

 Score =  220 bits (560), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 68/154 (44%), Positives = 103/154 (66%), Gaps = 1/154 (0%)

Query: 28  RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
            +  + +    + T+ + L  W+R  SL  + +G +CC +E       R+D +R+G  PR
Sbjct: 7   PLLDQTSSNSVISTTPNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66

Query: 88  ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146
           +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG 
Sbjct: 67  SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126

Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           D+++PVD+Y+PGCPP  EA+I  +  L+KKI R 
Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDALTKLRKKIARE 160


>gi|149390544|ref|YP_001294188.1| NADH-plastoquinone oxidoreductase subunit K [Buxus microphylla]
 gi|146762289|gb|ABQ45253.1| NADH-plastoquinone oxidoreductase subunit K [Buxus microphylla]
          Length = 257

 Score =  220 bits (560), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 74/181 (40%), Positives = 111/181 (61%), Gaps = 2/181 (1%)

Query: 1   MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTF 60
           M L   N K    ++   +     +F  +    T    + T+ + L  W+R  SL  + +
Sbjct: 38  MVLVPDNNKKKEEKNYIEIVMNSIEFP-LVDRTTQNSVISTTSNDLSNWSRLSSLWPLLY 96

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           G +CC +E       R+D +R+G  PR+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP
Sbjct: 97  GTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEP 156

Query: 121 RYVISMGSCANGGGYYH-YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           +YVI+MG+C   GG +   SYS VRG D+++PVD+Y+PGCPP  EA+I  I  L+KK+ R
Sbjct: 157 KYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKKVSR 216

Query: 180 V 180
            
Sbjct: 217 E 217


>gi|126165891|ref|NP_783236.2| NADH dehydrogenase subunit K [Atropa belladonna]
          Length = 247

 Score =  220 bits (560), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 69/160 (43%), Positives = 105/160 (65%), Gaps = 1/160 (0%)

Query: 22  VDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLER 81
           +++    +         + T+++ L  W+R  SL  + +G +CC +E       R+D +R
Sbjct: 23  MNSIQFPLLDRTAQNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDR 82

Query: 82  FGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSY 140
           +G  PR+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SY
Sbjct: 83  YGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSY 142

Query: 141 SVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           S VRG D+++PVD+Y+PGCPP  EA+I  I  L+KKI R 
Sbjct: 143 STVRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 182


>gi|228917908|ref|ZP_04081444.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
           [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1]
 gi|228949019|ref|ZP_04111292.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
           [Bacillus thuringiensis serovar monterrey BGSC 4AJ1]
 gi|228968422|ref|ZP_04129414.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
           [Bacillus thuringiensis serovar sotto str. T04001]
 gi|228988523|ref|ZP_04148611.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
           [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1]
 gi|229076513|ref|ZP_04209474.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
           [Bacillus cereus Rock4-18]
 gi|229094409|ref|ZP_04225481.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
           [Bacillus cereus Rock3-42]
 gi|229099732|ref|ZP_04230658.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
           [Bacillus cereus Rock3-29]
 gi|229118795|ref|ZP_04248145.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
           [Bacillus cereus Rock1-3]
 gi|229124802|ref|ZP_04253981.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
           [Bacillus cereus 95/8201]
 gi|229142039|ref|ZP_04270564.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
           [Bacillus cereus BDRD-ST26]
 gi|229175973|ref|ZP_04303469.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
           [Bacillus cereus MM3]
 gi|228607466|gb|EEK64792.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
           [Bacillus cereus MM3]
 gi|228641328|gb|EEK97634.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
           [Bacillus cereus BDRD-ST26]
 gi|228658677|gb|EEL14338.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
           [Bacillus cereus 95/8201]
 gi|228664665|gb|EEL20157.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
           [Bacillus cereus Rock1-3]
 gi|228683702|gb|EEL37654.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
           [Bacillus cereus Rock3-29]
 gi|228688946|gb|EEL42773.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
           [Bacillus cereus Rock3-42]
 gi|228706605|gb|EEL58817.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
           [Bacillus cereus Rock4-18]
 gi|228771203|gb|EEM19681.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
           [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1]
 gi|228791270|gb|EEM38880.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
           [Bacillus thuringiensis serovar sotto str. T04001]
 gi|228810775|gb|EEM57123.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
           [Bacillus thuringiensis serovar monterrey BGSC 4AJ1]
 gi|228841705|gb|EEM86816.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
           [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1]
          Length = 148

 Score =  219 bits (559), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 88/136 (64%), Positives = 107/136 (78%)

Query: 43  VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL 102
           ++QL  WAR+ SL  MTFGLACCA+EMM      YDL+RFG   R SPRQSDVMIV+GT+
Sbjct: 1   MEQLKGWARSNSLWPMTFGLACCAIEMMGVGSSHYDLDRFGSFFRTSPRQSDVMIVSGTV 60

Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162
           T KMA  +RR+YDQMPEP++VI+MGSCA  GG Y  SY+VV+G D+IVPVD+Y+PGCPP 
Sbjct: 61  TKKMAPIVRRLYDQMPEPKWVIAMGSCATAGGPYVNSYAVVKGVDQIVPVDVYIPGCPPN 120

Query: 163 AEALIYGILLLQKKIR 178
             ALIYGI  L++KIR
Sbjct: 121 PAALIYGINKLKEKIR 136


>gi|290489706|gb|ADD31237.1| NADH-plastoquinone oxidoreductase subunit K protein [Aucuba
           japonica]
          Length = 254

 Score =  219 bits (559), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 70/154 (45%), Positives = 103/154 (66%), Gaps = 1/154 (0%)

Query: 28  RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
            +    T    + T+++ L  W+R  SL  + +G +CC +E       R+D +R+G  PR
Sbjct: 36  PLLDRTTPNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 95

Query: 88  ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146
           +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG 
Sbjct: 96  SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 155

Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           D+++PVD+Y+PGCPP  EA+I  I  L+KKI R 
Sbjct: 156 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 189


>gi|156586759|gb|ABU85211.1| NADH-plastoquinone oxidoreductase subunit K [Anethum graveolens]
          Length = 225

 Score =  219 bits (559), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 70/154 (45%), Positives = 102/154 (66%), Gaps = 1/154 (0%)

Query: 28  RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
            +    T    + T+ + L  W+R  SL  + +G +CC +E       R+D +R+G  PR
Sbjct: 7   PLLDRTTQNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66

Query: 88  ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146
           +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG 
Sbjct: 67  SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTISGGMFSTDSYSTVRGV 126

Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           D+++PVD+Y+PGCPP  EA+I  I  L+KKI R 
Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 160


>gi|290489746|gb|ADD31257.1| NADH-plastoquinone oxidoreductase subunit K protein [Staphylea
           colchica]
          Length = 226

 Score =  219 bits (559), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 69/154 (44%), Positives = 101/154 (65%), Gaps = 1/154 (0%)

Query: 28  RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
            +         + T+ + L  W+R  SL  + +G +CC +E       R+D +R+G  PR
Sbjct: 7   PLLERTAQNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66

Query: 88  ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146
           +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG 
Sbjct: 67  SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126

Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           D+++PVD+Y+PGCPP  EA+I  I  L+KKI R 
Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 160


>gi|139389422|ref|YP_001123119.1| NADH dehydrogenase subunit K [Olimarabidopsis pumila]
 gi|218527928|sp|A4QJT7|NDHK_OLIPU RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
 gi|134286316|dbj|BAF49943.1| photosystem II G protein [Olimarabidopsis pumila]
          Length = 225

 Score =  219 bits (559), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 70/154 (45%), Positives = 103/154 (66%), Gaps = 1/154 (0%)

Query: 28  RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
            +    T    + T+++ L  W+R  SL  + +G +CC +E       R+D +R+G  PR
Sbjct: 7   PVLDRTTKNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66

Query: 88  ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146
           +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG 
Sbjct: 67  SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126

Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           D+++PVD+Y+PGCPP  EA+I  I  L+KKI R 
Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKIARE 160


>gi|218527959|sp|Q09X13|NDHK_MORIN RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
          Length = 226

 Score =  219 bits (559), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 70/154 (45%), Positives = 101/154 (65%), Gaps = 1/154 (0%)

Query: 28  RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
            +    T    + T+   L  W+R  SL  + +G +CC +E       R+D +R+G  PR
Sbjct: 8   PLLDRTTQNSVISTTSSDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 67

Query: 88  ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146
           +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG 
Sbjct: 68  SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 127

Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           D+++PVD+Y+PGCPP  EA+I  I  L+KKI R 
Sbjct: 128 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 161


>gi|7525037|ref|NP_051063.1| NADH dehydrogenase subunit K [Arabidopsis thaliana]
 gi|6685682|sp|P56756|NDHK_ARATH RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
 gi|5881698|dbj|BAA84389.1| photosystem II G protein [Arabidopsis thaliana]
          Length = 225

 Score =  219 bits (559), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 71/154 (46%), Positives = 103/154 (66%), Gaps = 1/154 (0%)

Query: 28  RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
            I    T    + T+++ L  W+R  SL  + +G +CC +E       R+D +R+G  PR
Sbjct: 7   PILDRTTKNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66

Query: 88  ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146
           +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG 
Sbjct: 67  SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126

Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           D+++PVD+Y+PGCPP  EA+I  I  L+KKI R 
Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKIARE 160


>gi|313183927|ref|YP_004021781.1| NADH-plastoquinone oxidoreductase subunit K [Equisetum arvense]
 gi|281371647|gb|ADA63580.1| NADH-plastoquinone oxidoreductase subunit K [Equisetum arvense]
          Length = 250

 Score =  219 bits (559), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 72/177 (40%), Positives = 116/177 (65%), Gaps = 8/177 (4%)

Query: 6   VNQKIISGQSSCSLEK-VDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLAC 64
           +N  II  +   S+E  +D++ + + +       ++T++     WAR  SL  + +G +C
Sbjct: 10  LNPSIIHEKIRFSMEPSIDSNTNELDA------IILTNLKDFSNWARLSSLWPLLYGTSC 63

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E       R+D +R+G  PR+SPRQ+D++I AGT+T KMA +L R+Y+QMPEP+YVI
Sbjct: 64  CFIEFASLIGSRFDFDRYGLVPRSSPRQADLLITAGTVTMKMAPSLVRLYEQMPEPKYVI 123

Query: 125 SMGSCANGGGYYH-YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           +MG+C   GG +   SYS VRG D+++PV++Y+PGCPP  EA+I  ++ L+K++ R 
Sbjct: 124 AMGACTITGGMFSTDSYSTVRGVDKLIPVNVYLPGCPPKPEAIIDAVVKLRKEVARE 180


>gi|154795256|ref|YP_784390.2| NADH-plastoquinone oxidoreductase subunit K [Drimys granadensis]
 gi|218527894|sp|Q06GZ3|NDHK_DRIGR RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
          Length = 227

 Score =  219 bits (559), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 69/154 (44%), Positives = 102/154 (66%), Gaps = 1/154 (0%)

Query: 28  RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
            +    T    + T+ + L  W+R  SL  + +G +CC +E       R+D +R+G  PR
Sbjct: 7   PLLDRTTQNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66

Query: 88  ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146
           +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG 
Sbjct: 67  SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126

Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           D+++PVD+Y+PGCPP  EA+I  I  L+KK+ R 
Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKVSRE 160


>gi|154795216|ref|YP_740206.2| NADH-plastoquinone oxidoreductase subunit K [Liriodendron
           tulipifera]
 gi|218527962|sp|Q0G9L5|NDHK_LIRTU RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
          Length = 225

 Score =  219 bits (559), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 69/154 (44%), Positives = 102/154 (66%), Gaps = 1/154 (0%)

Query: 28  RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
            +    T    + T+ + L  W+R  SL  + +G +CC +E       R+D +R+G  PR
Sbjct: 7   PLLDRTTQNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66

Query: 88  ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146
           +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG 
Sbjct: 67  SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126

Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           D+++PVD+Y+PGCPP  EA+I  I  L+KK+ R 
Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKVSRE 160


>gi|283782292|ref|YP_003373047.1| NADH-quinone oxidoreductase, B subunit [Pirellula staleyi DSM 6068]
 gi|283440745|gb|ADB19187.1| NADH-quinone oxidoreductase, B subunit [Pirellula staleyi DSM 6068]
          Length = 227

 Score =  219 bits (559), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 87/175 (49%), Positives = 120/175 (68%), Gaps = 7/175 (4%)

Query: 6   VNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACC 65
           VNQ+    Q    L       +R+      +    TSV+Q + WAR  S+  MTFGLACC
Sbjct: 7   VNQQAGQQQLLEMLASQPWIEARV-----EENVFTTSVEQAINWARQSSIWPMTFGLACC 61

Query: 66  AVEMMQASMPRYDLERFGF-APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           A+EMM A   RYD++RFG  A RA+PRQ+D+MIVAGT+T KMAS +RR+Y+ MP+P++VI
Sbjct: 62  AIEMMAAGASRYDMDRFGAGAFRATPRQADLMIVAGTVTYKMASRVRRLYNMMPDPKFVI 121

Query: 125 SMGSCANGGGY-YHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           +MG+C  GGG  + + Y VV+G D +VPVD+Y+PGCPP  EAL+ G++ +Q KI+
Sbjct: 122 AMGACTVGGGPYFKWGYHVVKGVDLVVPVDVYIPGCPPRPEALLEGLMRIQDKIK 176


>gi|218512132|sp|Q2MI96|NDHK_SOLLC RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
 gi|218512133|sp|Q2VEH3|NDHK_SOLTU RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
 gi|218527953|sp|Q2MII3|NDHK_SOLBU RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
          Length = 225

 Score =  219 bits (559), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 70/160 (43%), Positives = 105/160 (65%), Gaps = 1/160 (0%)

Query: 22  VDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLER 81
           +++    +         + T+++ L  W+R  SL  + +G +CC +E       R+D +R
Sbjct: 1   MNSIQFPLLDRTAPNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDR 60

Query: 82  FGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSY 140
           +G  PR+SPRQSD+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SY
Sbjct: 61  YGLVPRSSPRQSDLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSY 120

Query: 141 SVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           S VRG D+++PVD+Y+PGCPP  EA+I  I  L+KKI R 
Sbjct: 121 STVRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 160


>gi|66876449|gb|AAY58005.1| NdhK [Evolvulus glomeratus]
          Length = 228

 Score =  219 bits (559), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 69/146 (47%), Positives = 101/146 (69%), Gaps = 1/146 (0%)

Query: 36  KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDV 95
              + T+++ L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPRQ+D+
Sbjct: 22  NSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADL 81

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGCDRIVPVDI 154
           ++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++PVD+
Sbjct: 82  ILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDV 141

Query: 155 YVPGCPPTAEALIYGILLLQKKIRRV 180
           Y+PGCPP  EA+I  I  L+KKI R 
Sbjct: 142 YLPGCPPKPEAVIDAITKLRKKISRE 167


>gi|239610399|gb|EEQ87386.1| NADH-ubiquinone oxidoreductase 20 kDa subunit [Ajellomyces
           dermatitidis ER-3]
          Length = 245

 Score =  219 bits (559), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 94/161 (58%), Positives = 121/161 (75%)

Query: 17  CSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPR 76
             +E+  +       +    G  + S+D +  W R  SL  ++ GLACC +EMM  SMPR
Sbjct: 72  ARMERSSSLLPSQDEKTGTMGHFLGSIDAVANWGRQASLWPISLGLACCGLEMMAVSMPR 131

Query: 77  YDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY 136
           YD +R G   RASPRQSD++IVAGT+TNKMA ALR VYDQMP+P++VISMGSCANGGGYY
Sbjct: 132 YDQDRLGTIFRASPRQSDLLIVAGTVTNKMAPALRLVYDQMPDPKWVISMGSCANGGGYY 191

Query: 137 HYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
           HYSYSVVRG DR++PVD+Y+PGCPPTAEAL+Y I ++++K+
Sbjct: 192 HYSYSVVRGVDRLLPVDVYLPGCPPTAEALMYAISVVRRKL 232


>gi|34481633|emb|CAD45111.1| photosystem II G protein [Amborella trichopoda]
          Length = 283

 Score =  219 bits (559), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 69/154 (44%), Positives = 102/154 (66%), Gaps = 1/154 (0%)

Query: 28  RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
            +    T    + T+ + L  W+R  SL  + +G +CC +E       R+D +R+G  PR
Sbjct: 65  PLLDRTTPNSVISTTPNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 124

Query: 88  ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146
           +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG 
Sbjct: 125 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 184

Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           D+++PVD+Y+PGCPP  EA+I  I  L+KK+ R 
Sbjct: 185 DKLIPVDVYLPGCPPKPEAIIDAITKLRKKVSRE 218


>gi|261195670|ref|XP_002624239.1| NADH-ubiquinone oxidoreductase 20 kDa subunit [Ajellomyces
           dermatitidis SLH14081]
 gi|239588111|gb|EEQ70754.1| NADH-ubiquinone oxidoreductase 20 kDa subunit [Ajellomyces
           dermatitidis SLH14081]
          Length = 244

 Score =  219 bits (559), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 94/161 (58%), Positives = 121/161 (75%)

Query: 17  CSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPR 76
             +E+  +       +    G  + S+D +  W R  SL  ++ GLACC +EMM  SMPR
Sbjct: 71  ARMERSTSLLPSQDEKTGTMGHFLGSIDAVANWGRQASLWPISLGLACCGLEMMAVSMPR 130

Query: 77  YDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY 136
           YD +R G   RASPRQSD++IVAGT+TNKMA ALR VYDQMP+P++VISMGSCANGGGYY
Sbjct: 131 YDQDRLGTIFRASPRQSDLLIVAGTVTNKMAPALRLVYDQMPDPKWVISMGSCANGGGYY 190

Query: 137 HYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
           HYSYSVVRG DR++PVD+Y+PGCPPTAEAL+Y I ++++K+
Sbjct: 191 HYSYSVVRGVDRLLPVDVYLPGCPPTAEALMYAISVVRRKL 231


>gi|108802647|ref|YP_636303.1| NADH dehydrogenase subunit K [Eucalyptus globulus subsp. globulus]
 gi|60460813|gb|AAX21033.1| NADH-plastoquinone oxidoreductase subunit K [Eucalyptus globulus
           subsp. globulus]
          Length = 284

 Score =  219 bits (559), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 70/154 (45%), Positives = 104/154 (67%), Gaps = 1/154 (0%)

Query: 28  RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
            + +  T    + T+++ L  W+R  SL  + +G +CC +E       R+D +R+G  PR
Sbjct: 66  PLLARTTQNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 125

Query: 88  ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146
           +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG 
Sbjct: 126 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 185

Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           D+++PVD+Y+PGCPP  EA+I  I  L+KKI R 
Sbjct: 186 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKIARE 219


>gi|37520318|ref|NP_923695.1| NADH dehydrogenase subunit B [Gloeobacter violaceus PCC 7421]
 gi|81710972|sp|Q7NML6|NDHK1_GLOVI RecName: Full=NAD(P)H-quinone oxidoreductase subunit K 1; AltName:
           Full=NAD(P)H dehydrogenase I subunit K 1; AltName:
           Full=NDH-1 subunit K 1; Short=NDH-K 1
 gi|35211311|dbj|BAC88690.1| NADH dehydrogenase subunit [Gloeobacter violaceus PCC 7421]
          Length = 232

 Score =  219 bits (559), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 71/157 (45%), Positives = 108/157 (68%), Gaps = 2/157 (1%)

Query: 22  VDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLER 81
              +   ++SE+T+   ++T+++ L  WAR  S+  + +G +CC +E       R+D +R
Sbjct: 8   NPIERPEVTSELTN-NVVLTTLNDLYNWARLSSVWPLMYGTSCCFIEFAGLIGSRFDFDR 66

Query: 82  FGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSY 140
           FG  PRASPRQ+D++I AGT+T KMA AL  +Y+QMPEP+YVI+MG+C   GG +   SY
Sbjct: 67  FGLVPRASPRQADLIITAGTVTMKMAPALVTLYEQMPEPKYVIAMGACTITGGMFSTDSY 126

Query: 141 SVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
           + VRG D+++PVD+Y+PGCPP  EA+   I+ L+KK+
Sbjct: 127 TTVRGVDKLIPVDVYIPGCPPRPEAIFDAIVKLRKKM 163


>gi|119356790|ref|YP_911434.1| NADH-quinone oxidoreductase, B subunit [Chlorobium phaeobacteroides
           DSM 266]
 gi|238055286|sp|A1BF33|NUOB_CHLPD RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|119354139|gb|ABL65010.1| NADH dehydrogenase subunit B [Chlorobium phaeobacteroides DSM 266]
          Length = 189

 Score =  219 bits (559), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 88/147 (59%), Positives = 112/147 (76%), Gaps = 1/147 (0%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           IT    L+TSVD ++ WAR  SL  M FGLACCA+EMM  +   YDLERFG  PR+SPRQ
Sbjct: 8   ITKHNVLITSVDNVLNWARLSSLWPMGFGLACCAIEMMATNASNYDLERFGIFPRSSPRQ 67

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVP 151
           SD+M+VAGT++ KMA  + R+Y+QMPEPRYV+SMGSC+N GG Y    Y V++G DRI+P
Sbjct: 68  SDLMLVAGTVSMKMAERVVRLYEQMPEPRYVLSMGSCSNCGGPYWEHGYHVLKGVDRIIP 127

Query: 152 VDIYVPGCPPTAEALIYGILLLQKKIR 178
           VD+YVPGCPP  E+LI G++ +Q+ IR
Sbjct: 128 VDVYVPGCPPRPESLIGGLMKVQELIR 154


>gi|113200912|gb|ABI32428.1| NADH-plastoquinone oxidoreductase subunit K [Daucus carota]
          Length = 283

 Score =  219 bits (559), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 70/154 (45%), Positives = 102/154 (66%), Gaps = 1/154 (0%)

Query: 28  RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
            +    T    + T+ + L  W+R  SL  + +G +CC +E       R+D +R+G  PR
Sbjct: 65  PLLDRTTQNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 124

Query: 88  ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146
           +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG 
Sbjct: 125 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTISGGMFSTDSYSTVRGV 184

Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           D+++PVD+Y+PGCPP  EA+I  I  L+KKI R 
Sbjct: 185 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 218


>gi|156598694|gb|ABU85602.1| NADH-plastoquinone oxidoreductase subunit K [Scaevola aemula]
          Length = 222

 Score =  219 bits (558), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 69/148 (46%), Positives = 101/148 (68%), Gaps = 1/148 (0%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
           T    + T+++ L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPRQ+
Sbjct: 10  TQNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 69

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGCDRIVPV 152
           D+++ AGT+T KM  +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++PV
Sbjct: 70  DLILTAGTVTMKMGPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 129

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRV 180
           D+Y+PGCPP  EA+I  I  L+KKI R 
Sbjct: 130 DVYLPGCPPKPEAVIDAITKLRKKISRE 157


>gi|147669451|ref|YP_001214269.1| NADH-quinone oxidoreductase, B subunit [Dehalococcoides sp. BAV1]
 gi|238055291|sp|A5FQY4|NUOB_DEHSB RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|146270399|gb|ABQ17391.1| NADH dehydrogenase subunit B [Dehalococcoides sp. BAV1]
          Length = 200

 Score =  219 bits (558), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 83/177 (46%), Positives = 116/177 (65%), Gaps = 1/177 (0%)

Query: 9   KIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVE 68
            +I    +            ++ E    G  +TSV++++ W+R  SL  + FGLACCA+E
Sbjct: 23  GVIQSFRTGHTSPYPDPADWLNGEEPPPGVFITSVEKVLNWSRHYSLWPVMFGLACCAIE 82

Query: 69  MMQASMPRYDLERFGF-APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMG 127
           MM  +  R+DL RFG    RASPRQ+D+MIVAGTLT KMA  L+R+YDQMPEP++V++MG
Sbjct: 83  MMCMAASRWDLARFGMDIFRASPRQADLMIVAGTLTWKMAPWLKRIYDQMPEPKWVLAMG 142

Query: 128 SCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           +C   GG +  SYSVV G + +VPVD+YVPGCPP  EAL+  I+ + +KI +   +K
Sbjct: 143 ACGTSGGLFRDSYSVVPGFNLVVPVDVYVPGCPPRPEALMRAIMDIHEKIDKTCILK 199


>gi|260076121|gb|ACX30998.1| NADH dehydrogenase subunit 10 [Moneuplotes crassus]
          Length = 163

 Score =  219 bits (558), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 96/140 (68%), Positives = 121/140 (86%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           +LVT +  ++ W+R GS+  +TFGLACCAVEMM ++M RYDL+RFG   RASPR SD++I
Sbjct: 5   WLVTKLQIMINWSRAGSIWPLTFGLACCAVEMMHSAMSRYDLDRFGTIFRASPRHSDLII 64

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           +AGTLTNKMA  LRR+++QM EP++++SMGSCANGGGYYHYSY+VVRG DRIVPVD+YVP
Sbjct: 65  IAGTLTNKMAPTLRRLFEQMQEPKFILSMGSCANGGGYYHYSYAVVRGADRIVPVDMYVP 124

Query: 158 GCPPTAEALIYGILLLQKKI 177
           GCPPTAEALI+G+L LQ K+
Sbjct: 125 GCPPTAEALIFGLLQLQGKV 144


>gi|20068335|emb|CAC88048.1| NADH dehydrogenase 32kD subunit [Atropa belladonna]
          Length = 284

 Score =  219 bits (558), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 69/160 (43%), Positives = 105/160 (65%), Gaps = 1/160 (0%)

Query: 22  VDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLER 81
           +++    +         + T+++ L  W+R  SL  + +G +CC +E       R+D +R
Sbjct: 60  MNSIQFPLLDRTAQNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDR 119

Query: 82  FGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSY 140
           +G  PR+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SY
Sbjct: 120 YGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSY 179

Query: 141 SVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           S VRG D+++PVD+Y+PGCPP  EA+I  I  L+KKI R 
Sbjct: 180 STVRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 219


>gi|91701654|gb|ABE47538.1| NADH-plastoquinone oxidoreductase subunit K [Vitis vinifera]
 gi|147769052|emb|CAN63542.1| hypothetical protein VITISV_025533 [Vitis vinifera]
          Length = 283

 Score =  219 bits (558), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 73/181 (40%), Positives = 110/181 (60%), Gaps = 1/181 (0%)

Query: 1   MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTF 60
           M L         G+ +     +++    +    T    + T+ + L  W+R  SL  + +
Sbjct: 38  MVLAPEYSDNKKGKKNNIETVMNSIEFPLLDRTTQNSVISTTSNDLSNWSRLSSLWPLLY 97

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           G +CC +E       R+D +R+G  PR+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP
Sbjct: 98  GTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEP 157

Query: 121 RYVISMGSCANGGGYYH-YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           +YVI+MG+C   GG +   SYS VRG D+++PVD+Y+PGCPP  EA+I  I  L+KKI R
Sbjct: 158 KYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKKISR 217

Query: 180 V 180
            
Sbjct: 218 E 218


>gi|317121592|ref|YP_004101595.1| NADH-quinone oxidoreductase subunit beta [Thermaerobacter
           marianensis DSM 12885]
 gi|315591572|gb|ADU50868.1| NADH-quinone oxidoreductase, B subunit [Thermaerobacter marianensis
           DSM 12885]
          Length = 350

 Score =  219 bits (558), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 80/145 (55%), Positives = 108/145 (74%)

Query: 37  GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVM 96
           G L T + +LV W R  S+ ++ FGLACCA+EMM A   R DL+R G   RASPRQ+D+M
Sbjct: 201 GILTTRLQELVNWGRANSMWYLLFGLACCAIEMMAAGGTRTDLDRIGSVFRASPRQADLM 260

Query: 97  IVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV 156
           IV+GT+T KMA  ++ +YDQM EP++V+SMG+CA  GG Y+  Y+VV G D+I+PVD+YV
Sbjct: 261 IVSGTVTEKMAPVVKTLYDQMAEPKFVVSMGACATNGGPYYQGYNVVDGVDKIIPVDVYV 320

Query: 157 PGCPPTAEALIYGILLLQKKIRRVG 181
            GCPP  EAL++ IL LQ K+R++G
Sbjct: 321 AGCPPRPEALVHAILKLQDKVRKIG 345


>gi|111074959|gb|ABH04821.1| NAD(P)H-quinone oxidoreductase 20 kDa subunit [Heliobacillus
           mobilis]
          Length = 175

 Score =  219 bits (558), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 77/154 (50%), Positives = 112/154 (72%), Gaps = 1/154 (0%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89
            E+  K  ++TS++ +  WAR  S   ++ GLACCA+EMM ++ PR+D+ RFG+   R S
Sbjct: 16  QELVQKNIIMTSLESVFNWARGNSFWPLSSGLACCAIEMMASAGPRFDIARFGYEVFRPS 75

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
            RQ+D +I+AGT+T KMA AL R+Y+QMPEP+++++MGSCA  GG +  SY+VV G D+I
Sbjct: 76  VRQADCIIIAGTVTWKMAPALVRLYEQMPEPKWILAMGSCACTGGPFVDSYAVVPGVDKI 135

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           +PVD+Y+PGCPP  EALI G L L++K++    V
Sbjct: 136 LPVDVYIPGCPPRPEALIDGFLKLKEKVQNPTKV 169


>gi|87300572|ref|ZP_01083414.1| NADH dehydrogenase beta subunit [Synechococcus sp. WH 5701]
 gi|87284443|gb|EAQ76395.1| NADH dehydrogenase beta subunit [Synechococcus sp. WH 5701]
          Length = 253

 Score =  219 bits (558), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 75/183 (40%), Positives = 112/183 (61%), Gaps = 6/183 (3%)

Query: 1   MGLTTVNQKIISGQSSCSLEKVDADF-----SRISSEITHKGFLVTSVDQLVTWARTGSL 55
           M +T  +       S  +L  + A       +   +    +  ++TS+D L  WAR  SL
Sbjct: 1   MTITPSSPGTSEAPSIEALRDLRASTCNPVGAPTVTSDLSENVILTSLDDLHNWARLSSL 60

Query: 56  MWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYD 115
             + +G ACC +E       R+D +RFG  PR+SPRQ+D++I AGT+T KMA AL R+Y+
Sbjct: 61  WPLLYGTACCFIEFAALIGSRFDFDRFGLVPRSSPRQADLLITAGTVTMKMAPALVRLYE 120

Query: 116 QMPEPRYVISMGSCANGGGYYH-YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQ 174
           QMPEP+YVI+MG+C   GG +   S + VRG D+++PVD+Y+PGCPP  EA+   ++ L+
Sbjct: 121 QMPEPKYVIAMGACTITGGMFSADSTTAVRGVDKLIPVDLYIPGCPPRPEAIFDAVIKLR 180

Query: 175 KKI 177
           KK+
Sbjct: 181 KKV 183


>gi|154795237|ref|YP_740654.2| NADH-plastoquinone oxidoreductase subunit K [Nandina domestica]
 gi|218527960|sp|Q09FV7|NDHK_NANDO RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
          Length = 225

 Score =  219 bits (558), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 70/154 (45%), Positives = 103/154 (66%), Gaps = 1/154 (0%)

Query: 28  RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
            +   IT    + T+ + L  W+R  SL  + +G +CC +E       R+D +R+G  PR
Sbjct: 7   PLLDRITQNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66

Query: 88  ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146
           +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG 
Sbjct: 67  SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126

Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           D+++PVD+Y+PGCPP  EA+I  I  L+KK+ R 
Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKVSRE 160


>gi|325093407|gb|EGC46717.1| NADH-ubiquinone oxidoreductase [Ajellomyces capsulatus H88]
          Length = 240

 Score =  219 bits (558), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 97/173 (56%), Positives = 124/173 (71%), Gaps = 2/173 (1%)

Query: 4   TTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLA 63
            T  +   +      +E+  +       +    G  +  +D +  WAR GSL  ++ GLA
Sbjct: 56  ITARENTANVPDVARIERNASLLPSQDEKTGAMGHFL--IDAVTNWARQGSLWPVSLGLA 113

Query: 64  CCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYV 123
           CC VEMM  SMPRYD +R G   RASPRQSD++IVAGT+TNKMA ALR VYDQMP+P++V
Sbjct: 114 CCGVEMMAVSMPRYDQDRLGTIFRASPRQSDLLIVAGTVTNKMAPALRLVYDQMPDPKWV 173

Query: 124 ISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKK 176
           ISMGSCANGGGYYHYSYSVVRG DR++PVD+++PGCPPTAEAL+Y + +L+KK
Sbjct: 174 ISMGSCANGGGYYHYSYSVVRGVDRLLPVDLFLPGCPPTAEALLYAMAVLRKK 226


>gi|307637933|gb|ADN80383.1| NADH-ubiquinone oxidoreductase chain B [Helicobacter pylori 908]
          Length = 159

 Score =  219 bits (558), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 84/147 (57%), Positives = 112/147 (76%), Gaps = 1/147 (0%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
            +++++D+L+ W R+ SL  +T+GLA CA+EMM     R+D +RFG   RASPRQSDVMI
Sbjct: 6   VILSTLDKLLNWGRSNSLWPLTYGLAWCAIEMMATGGSRFDFDRFGTIFRASPRQSDVMI 65

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           +AGTLT K A  +RR+YDQMPEP++VISMGSCAN GG ++ +Y+ V+G DRIVPVDIY+P
Sbjct: 66  IAGTLTKKHAEFMRRLYDQMPEPKWVISMGSCANTGGMFN-TYATVQGADRIVPVDIYLP 124

Query: 158 GCPPTAEALIYGILLLQKKIRRVGNVK 184
           GC P  E L Y +++LQ KIRR   +K
Sbjct: 125 GCAPRPETLQYALMVLQDKIRRSKAIK 151


>gi|167764930|ref|ZP_02437051.1| hypothetical protein BACSTE_03322 [Bacteroides stercoris ATCC
           43183]
 gi|167697599|gb|EDS14178.1| hypothetical protein BACSTE_03322 [Bacteroides stercoris ATCC
           43183]
          Length = 195

 Score =  219 bits (558), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 73/160 (45%), Positives = 106/160 (66%), Gaps = 3/160 (1%)

Query: 22  VDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDL 79
            +    ++  E+   G    +  +D  + W R+ SL  +TF  +CC +E M     RYD+
Sbjct: 19  DNETLEKLVRELNAGGANVAIGVLDDFIDWGRSNSLWPLTFATSCCGIEFMALGAARYDM 78

Query: 80  ERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY 138
            RFGF   RASPRQ+D+++V GT+TNKMA  L+R+YDQM +P+YVI++G CA  GG +  
Sbjct: 79  ARFGFEVARASPRQADMIMVCGTITNKMAPVLKRLYDQMADPKYVIAVGGCAVSGGPFKK 138

Query: 139 SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           SY VV G D+I+PVD+Y+PGCPP  EA  YG++ LQ+K++
Sbjct: 139 SYHVVNGVDKILPVDVYIPGCPPRPEAFYYGMMQLQRKVK 178


>gi|94969279|ref|YP_591327.1| NADH dehydrogenase subunit B [Candidatus Koribacter versatilis
           Ellin345]
 gi|238065004|sp|Q1IPE7|NUOB1_ACIBL RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName:
           Full=NADH dehydrogenase I subunit B 1; AltName:
           Full=NDH-1 subunit B 1
 gi|94551329|gb|ABF41253.1| NADH dehydrogenase subunit B [Candidatus Koribacter versatilis
           Ellin345]
          Length = 213

 Score =  219 bits (558), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 79/149 (53%), Positives = 107/149 (71%), Gaps = 2/149 (1%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89
            E   +G ++T++D  V W R  S+  MTFGLACCA+EMM     R+D+ RFG    R S
Sbjct: 49  GEQPEEGIVLTTLDNAVNWIRKNSIWPMTFGLACCAIEMMSMGASRFDIARFGAEVFRPS 108

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQSD+MI+AG ++ KMA  +R +Y QMPEP++VISMG+CA  GG ++  Y++V+G ++ 
Sbjct: 109 PRQSDLMIIAGRVSQKMAPVIRHLYLQMPEPKWVISMGACATSGGVFNN-YALVQGVNQY 167

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           +PVDIYVPGCPP  E LIY I LLQ+KI+
Sbjct: 168 IPVDIYVPGCPPRPEQLIYAITLLQEKIQ 196


>gi|154795252|ref|YP_001294356.2| NADH dehydrogenase subunit K [Dioscorea elephantipes]
 gi|218527899|sp|A6MML1|NDHK_DIOEL RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
          Length = 225

 Score =  219 bits (558), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 69/153 (45%), Positives = 102/153 (66%), Gaps = 1/153 (0%)

Query: 29  ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88
           +  + T    + T+ + L  W+R  SL  + +G +CC +E       R+D +R+G  PR+
Sbjct: 8   LLDQTTPNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRS 67

Query: 89  SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGCD 147
           SPRQ+D+++ AGT+T KMA +L R+Y+QM EP+YVI+MG+C   GG +   SYS VRG D
Sbjct: 68  SPRQADLILTAGTVTMKMAPSLVRLYEQMAEPKYVIAMGACTITGGMFSTDSYSTVRGVD 127

Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           +++PVD+Y+PGCPP  EA+I  I  L+KKI R 
Sbjct: 128 KLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 160


>gi|148668050|gb|ABR01434.1| NADH-plastoquinone oxidoreductase subunit K [Dioscorea
           elephantipes]
          Length = 247

 Score =  219 bits (558), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 69/153 (45%), Positives = 102/153 (66%), Gaps = 1/153 (0%)

Query: 29  ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88
           +  + T    + T+ + L  W+R  SL  + +G +CC +E       R+D +R+G  PR+
Sbjct: 30  LLDQTTPNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRS 89

Query: 89  SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGCD 147
           SPRQ+D+++ AGT+T KMA +L R+Y+QM EP+YVI+MG+C   GG +   SYS VRG D
Sbjct: 90  SPRQADLILTAGTVTMKMAPSLVRLYEQMAEPKYVIAMGACTITGGMFSTDSYSTVRGVD 149

Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           +++PVD+Y+PGCPP  EA+I  I  L+KKI R 
Sbjct: 150 KLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 182


>gi|113200998|gb|ABI32513.1| NADH-plastoquinone oxidoreductase subunit K [Liriodendron
           tulipifera]
          Length = 285

 Score =  219 bits (558), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 73/177 (41%), Positives = 109/177 (61%), Gaps = 2/177 (1%)

Query: 5   TVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLAC 64
           + NQ    G+          +F  +    T    + T+ + L  W+R  SL  + +G +C
Sbjct: 45  SDNQNQKEGKDYIETVMNSIEFPLL-DRTTQNSVISTTSNDLSNWSRLSSLWPLLYGTSC 103

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E       R+D +R+G  PR+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI
Sbjct: 104 CFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVI 163

Query: 125 SMGSCANGGGYYH-YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           +MG+C   GG +   SYS VRG D+++PVD+Y+PGCPP  EA+I  I  L+KK+ R 
Sbjct: 164 AMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKKVSRE 220


>gi|156598201|gb|ABU85364.1| NADH-plastoquinone oxidoreductase subunit K [Elaeis oleifera]
          Length = 287

 Score =  219 bits (558), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 69/154 (44%), Positives = 104/154 (67%), Gaps = 1/154 (0%)

Query: 28  RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
            +  + T    + T+ + L  W+R  SL  + +G +CC +E       R+D +R+G  P+
Sbjct: 66  PLLDQTTPNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPK 125

Query: 88  ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146
           +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG 
Sbjct: 126 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 185

Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           D+++PVD+Y+PGCPP  EA+I  I+ L+KKI R 
Sbjct: 186 DKLIPVDVYLPGCPPKPEAVIDAIMKLRKKISRE 219


>gi|122211719|sp|Q32RI3|NDHK_ZYGCR RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
 gi|61393680|gb|AAX45822.1| 27 kDa subunit of NADH-ubiquinone oxidoreductase [Zygnema
           circumcarinatum]
          Length = 255

 Score =  219 bits (558), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 66/153 (43%), Positives = 104/153 (67%), Gaps = 1/153 (0%)

Query: 30  SSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS 89
           + +  +   ++T++  +  W R  SL  + +G +CC +E       R+D +R+G  PR+S
Sbjct: 13  TKQNVYDSVVLTTLQDVSNWVRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSS 72

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGCDR 148
           PRQ+D++I AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+
Sbjct: 73  PRQADLIITAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDK 132

Query: 149 IVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
           ++PVD+Y+PGCPP  EA++  I+ L+KK+ +  
Sbjct: 133 LIPVDVYLPGCPPKPEAIVDAIIKLRKKVAQEN 165


>gi|139389954|ref|YP_001123554.1| photosystem II G protein [Draba nemorosa]
 gi|218527888|sp|A4QL23|NDHK_DRANE RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
 gi|134286756|dbj|BAF50378.1| photosystem II G protein [Draba nemorosa]
          Length = 225

 Score =  219 bits (557), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 70/154 (45%), Positives = 102/154 (66%), Gaps = 1/154 (0%)

Query: 28  RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
            +    T    + T+++ L  W+R  SL    +G +CC +E       R+D +R+G  PR
Sbjct: 7   PVLDRTTKNSVISTTLNDLSNWSRLSSLWPFLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66

Query: 88  ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146
           +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG 
Sbjct: 67  SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126

Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           D+++PVD+Y+PGCPP  EA+I  I  L+KKI R 
Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKIARE 160


>gi|110456747|gb|ABG74842.1| NADH dehydrogenase 32 kDa subunit [Menodora longiflora]
          Length = 213

 Score =  219 bits (557), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 69/154 (44%), Positives = 102/154 (66%), Gaps = 1/154 (0%)

Query: 28  RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
            +  +        T+++ L  W+R  SL  + +G +CC +E       R+D +R+G  PR
Sbjct: 7   PLLDQRVQNSVFSTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66

Query: 88  ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146
           +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG 
Sbjct: 67  SSPRQADLILTAGTVTMKMAPSLMRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126

Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           D+++PVD+Y+PGCPP  EA+I  I  L+KKI R 
Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRA 160


>gi|290489730|gb|ADD31249.1| NADH-plastoquinone oxidoreductase subunit K protein [Euonymus
           americanus]
          Length = 228

 Score =  219 bits (557), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 70/154 (45%), Positives = 102/154 (66%), Gaps = 1/154 (0%)

Query: 28  RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
            +    T    + T+ + L  W+R  SL  + +G +CC +E       R+D +R+G  PR
Sbjct: 7   PLLDRTTQNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66

Query: 88  ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146
           +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG 
Sbjct: 67  SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTESYSTVRGV 126

Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           D+++PVD+Y+PGCPP  EA+I  I  L+KKI R 
Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 160


>gi|290489710|gb|ADD31239.1| NADH-plastoquinone oxidoreductase subunit K protein [Ehretia
           acuminata]
          Length = 284

 Score =  219 bits (557), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 70/154 (45%), Positives = 103/154 (66%), Gaps = 1/154 (0%)

Query: 28  RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
            +    T    + T+++ L  W+R  SL  + +G +CC +E       R+D +R+G  PR
Sbjct: 66  PLLDRTTPNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 125

Query: 88  ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146
           +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG 
Sbjct: 126 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 185

Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           D+++PVD+Y+PGCPP  EA+I  I  L+KKI R 
Sbjct: 186 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 219


>gi|322417697|ref|YP_004196920.1| NADH dehydrogenase I subunit D [Geobacter sp. M18]
 gi|320124084|gb|ADW11644.1| NADH dehydrogenase I, D subunit [Geobacter sp. M18]
          Length = 794

 Score =  219 bits (557), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 81/154 (52%), Positives = 110/154 (71%), Gaps = 2/154 (1%)

Query: 26  FSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA 85
            S    E   +  L+TS+D L+ W R  SL  M FGL+CC VEMM +   RYD+ RFG  
Sbjct: 1   MSERDDEKIPENVLLTSLDDLINWGRANSLWPMFFGLSCCFVEMMTSFTSRYDVSRFGAE 60

Query: 86  P-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR 144
             R +PR+SD+M++AGT+  KMA ++ R+Y+QM EP++VISMGSCAN GG Y   YSVV+
Sbjct: 61  VLRGTPRESDLMVIAGTVFKKMAPSILRLYEQMAEPKWVISMGSCANSGGMY-DVYSVVQ 119

Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           G ++I+PVD+Y+PGCPP  E+ + G++LLQKKIR
Sbjct: 120 GVNQILPVDLYIPGCPPRPESFLEGLMLLQKKIR 153


>gi|291298799|ref|YP_003510077.1| NADH-quinone oxidoreductase subunit B [Stackebrandtia nassauensis
           DSM 44728]
 gi|290568019|gb|ADD40984.1| NADH-quinone oxidoreductase, B subunit [Stackebrandtia nassauensis
           DSM 44728]
          Length = 216

 Score =  219 bits (557), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 81/148 (54%), Positives = 103/148 (69%), Gaps = 2/148 (1%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89
            E    G L+TSV++LV W R  S    TFGLACCA+EMM     RYD  RFG    RAS
Sbjct: 4   EEKLPSGILLTSVEKLVNWTRKASFWPATFGLACCAIEMMATGAARYDTARFGMEVFRAS 63

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQ+D+MIVAG ++ KMA  LR++YDQM EP++V+SMG CA+ GG ++  Y++V+G D +
Sbjct: 64  PRQADLMIVAGRVSQKMAPVLRQIYDQMSEPKWVLSMGVCASSGGMFNN-YAIVQGVDHV 122

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKI 177
           VPVDIY+PGCPP  E L+  IL L  KI
Sbjct: 123 VPVDIYLPGCPPRPEMLLDAILKLHDKI 150


>gi|290489728|gb|ADD31248.1| NADH-plastoquinone oxidoreductase subunit K protein [Cornus
           florida]
          Length = 252

 Score =  219 bits (557), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 73/181 (40%), Positives = 110/181 (60%), Gaps = 2/181 (1%)

Query: 1   MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTF 60
           M L          +++  +     DF  +    T    + T+ + L  W+R  SL  + +
Sbjct: 8   MVLAPEYSDNKKKKNTIEMVMNSIDFPLL-DRTTPNSVISTTSNDLSNWSRLSSLWPLLY 66

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           G +CC +E       R+D +R+G  PR+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP
Sbjct: 67  GTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEP 126

Query: 121 RYVISMGSCANGGGYYH-YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           +YVI+MG+C   GG +   SYS VRG D+++PVD+Y+PGCPP  EA+I  I  L+KKI +
Sbjct: 127 KYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKKISQ 186

Query: 180 V 180
            
Sbjct: 187 E 187


>gi|112032666|gb|ABH88301.1| NADH-plastoquinone oxidoreductase subunit K [Drimys granadensis]
          Length = 287

 Score =  219 bits (557), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 69/154 (44%), Positives = 102/154 (66%), Gaps = 1/154 (0%)

Query: 28  RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
            +    T    + T+ + L  W+R  SL  + +G +CC +E       R+D +R+G  PR
Sbjct: 67  PLLDRTTQNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 126

Query: 88  ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146
           +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG 
Sbjct: 127 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 186

Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           D+++PVD+Y+PGCPP  EA+I  I  L+KK+ R 
Sbjct: 187 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKVSRE 220


>gi|300869242|ref|ZP_07113836.1| NAD(P)H-quinone oxidoreductase subunit K [Oscillatoria sp. PCC
           6506]
 gi|300332787|emb|CBN59034.1| NAD(P)H-quinone oxidoreductase subunit K [Oscillatoria sp. PCC
           6506]
          Length = 240

 Score =  219 bits (557), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 74/169 (43%), Positives = 111/169 (65%), Gaps = 2/169 (1%)

Query: 10  IISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEM 69
           ++S  +  +      +   I+S+++    ++T+VD L  WAR  SL  + +G ACC +E 
Sbjct: 2   VLSSDTQKTQLINPVERPEITSQLSE-NVILTTVDDLYNWARLSSLWPLLYGTACCFIEF 60

Query: 70  MQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSC 129
                 R+D +RFG  PR+SPRQ+D++I AGT+T K A  L R+Y+QMPEP+YVI+MG+C
Sbjct: 61  AALIGSRFDFDRFGLVPRSSPRQADLIITAGTITMKYAPILVRLYEQMPEPKYVIAMGAC 120

Query: 130 ANGGGYYH-YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
              GG +   S + VRG D+++PVD+Y+PGCPP  EA+I  I+ L+KKI
Sbjct: 121 TITGGMFSMDSPTAVRGVDKLIPVDVYIPGCPPRPEAIIDAIIKLRKKI 169


>gi|313681394|ref|YP_004059132.1| NADH dehydrogenase subunit b [Sulfuricurvum kujiense DSM 16994]
 gi|313154254|gb|ADR32932.1| NADH dehydrogenase subunit B [Sulfuricurvum kujiense DSM 16994]
          Length = 169

 Score =  219 bits (557), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 80/147 (54%), Positives = 111/147 (75%), Gaps = 1/147 (0%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
             +T++D++V W R+ SL  +T+GLACC +EMM +   RYD +RFG   RASPRQ+++M+
Sbjct: 16  VALTTIDKVVNWGRSNSLWALTYGLACCGIEMMASGASRYDFDRFGTIFRASPRQAELMV 75

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGTLT K A  +RR+YDQM EP++VISMGSCAN GG ++ +Y+ V+G DR++PVD+Y+P
Sbjct: 76  VAGTLTKKHAEFIRRLYDQMTEPKWVISMGSCANTGGMFN-TYATVQGVDRVIPVDLYLP 134

Query: 158 GCPPTAEALIYGILLLQKKIRRVGNVK 184
           GC P  E L Y +LLLQ+KIRR    +
Sbjct: 135 GCAPRPETLQYAVLLLQQKIRRESASR 161


>gi|254415153|ref|ZP_05028915.1| NADH-quinone oxidoreductase, B subunit subfamily, putative
           [Microcoleus chthonoplastes PCC 7420]
 gi|196177959|gb|EDX72961.1| NADH-quinone oxidoreductase, B subunit subfamily, putative
           [Microcoleus chthonoplastes PCC 7420]
          Length = 247

 Score =  219 bits (557), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 75/175 (42%), Positives = 110/175 (62%), Gaps = 2/175 (1%)

Query: 5   TVNQKIISGQSSCSLEKVDADFSRIS-SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLA 63
             +    + Q     EK+    SR   ++   +  ++T+VD L  WAR  SL  M +G A
Sbjct: 2   NTDTANAASQQQQPKEKIINPISRPQVTQNLSENVILTTVDDLYNWARLSSLWPMMYGTA 61

Query: 64  CCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYV 123
           CC +E       R+D +RFG  PR SPRQ+D++I AGT+T KM  AL R+Y+QMPEP+YV
Sbjct: 62  CCFIEFAAMIGSRFDFDRFGLVPRCSPRQADLIITAGTITMKMTPALVRLYEQMPEPKYV 121

Query: 124 ISMGSCANGGGYYH-YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
           ++MG+C   GG +   S + VRG D+++PVD+Y+PGCPP  EA++  I+ L+KK+
Sbjct: 122 MAMGACTITGGMFSVDSPTAVRGVDKLIPVDVYIPGCPPRPEAIMDAIVKLRKKV 176


>gi|139388914|ref|YP_001123641.1| NADH dehydrogenase subunit K [Lepidium virginicum]
 gi|218527910|sp|A4QLB0|NDHK_LEPVR RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
 gi|134286844|dbj|BAF50465.1| photosystem II G protein [Lepidium virginicum]
          Length = 225

 Score =  219 bits (557), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 70/154 (45%), Positives = 103/154 (66%), Gaps = 1/154 (0%)

Query: 28  RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
            +    T    + T+++ L  W+R  SL  + +G +CC +E       R+D +R+G  PR
Sbjct: 7   PVLDRTTTNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66

Query: 88  ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146
           +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG 
Sbjct: 67  SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126

Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           D+++PVD+Y+PGCPP  EA+I  I  L+KKI R 
Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKIARE 160


>gi|139387256|ref|YP_001123377.1| NADH dehydrogenase subunit K [Capsella bursa-pastoris]
 gi|218527884|sp|A4QKJ6|NDHK_CAPBU RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
 gi|134286577|dbj|BAF50201.1| photosystem II G protein [Capsella bursa-pastoris]
          Length = 225

 Score =  219 bits (557), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 70/154 (45%), Positives = 102/154 (66%), Gaps = 1/154 (0%)

Query: 28  RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
            +    T    + T+++ L  W R  SL  + +G +CC +E       R+D +R+G  PR
Sbjct: 7   PVLDRTTKNSVISTTLNDLSNWTRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66

Query: 88  ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146
           +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG 
Sbjct: 67  SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126

Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           D+++PVD+Y+PGCPP  EA+I  I  L+KKI R 
Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKIARE 160


>gi|317046177|ref|YP_004072466.1| NADH dehydrogenase 32 kDa subunit [Corynocarpus laevigata]
 gi|309252894|gb|ADO60314.1| NADH dehydrogenase 32 kDa subunit [Corynocarpus laevigata]
          Length = 226

 Score =  219 bits (557), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 70/154 (45%), Positives = 102/154 (66%), Gaps = 1/154 (0%)

Query: 28  RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
            +    T    + T+ + L  W+R  SL  + +G +CC +E       R+D +R+G  PR
Sbjct: 7   PLLDRTTQTSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66

Query: 88  ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146
           +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG 
Sbjct: 67  SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126

Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           D+++PVD+Y+PGCPP  EA+I  I  L+KKI R 
Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 160


>gi|225563447|gb|EEH11726.1| NADH-ubiquinone oxidoreductase [Ajellomyces capsulatus G186AR]
          Length = 240

 Score =  219 bits (557), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 97/173 (56%), Positives = 124/173 (71%), Gaps = 2/173 (1%)

Query: 4   TTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLA 63
            T  +   +      +E+  +       +    G  +  +D +  WAR GSL  ++ GLA
Sbjct: 56  ITPRENTANVPDVARIEQNASLLPSQDEKTGAMGHFL--IDAVTNWARQGSLWPVSLGLA 113

Query: 64  CCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYV 123
           CC VEMM  SMPRYD +R G   RASPRQSD++IVAGT+TNKMA ALR VYDQMP+P++V
Sbjct: 114 CCGVEMMAVSMPRYDQDRLGTIFRASPRQSDLLIVAGTVTNKMAPALRLVYDQMPDPKWV 173

Query: 124 ISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKK 176
           ISMGSCANGGGYYHYSYSVVRG DR++PVD+++PGCPPTAEAL+Y + +L+KK
Sbjct: 174 ISMGSCANGGGYYHYSYSVVRGVDRLLPVDLFLPGCPPTAEALLYAMAVLRKK 226


>gi|78221378|ref|YP_383125.1| trifunctional NADH dehydrogenase I subunit B/C/D [Geobacter
           metallireducens GS-15]
 gi|123572941|sp|Q39ZC4|NUBCD_GEOMG RecName: Full=NADH-quinone oxidoreductase subunit B/C/D; AltName:
           Full=NADH dehydrogenase I subunit B/C/D; AltName:
           Full=NDH-1 subunit B/C/D
 gi|78192633|gb|ABB30400.1| NADH dehydrogenase subunit D / NADH dehydrogenase subunit C / NADH
           dehydrogenase subunit B [Geobacter metallireducens
           GS-15]
          Length = 791

 Score =  219 bits (557), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 77/154 (50%), Positives = 109/154 (70%), Gaps = 2/154 (1%)

Query: 29  ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-R 87
           +      +  ++T +D L+ W R  SL  M FGL+CC VEMM +   RYD+ RFG    R
Sbjct: 1   MEETEIPQNIVLTRLDDLINWGRANSLWPMFFGLSCCFVEMMTSFTSRYDISRFGAEVLR 60

Query: 88  ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCD 147
            +PR++D+M++AGT+  KMA ++ R+Y+QM EP++VISMGSCAN GG Y   YSVV+G +
Sbjct: 61  GTPREADLMVIAGTVFKKMAPSILRLYEQMAEPKWVISMGSCANSGGMY-DVYSVVQGVN 119

Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
           +I+PVD++VPGCPP  EA + G++LLQ+KIRR  
Sbjct: 120 QIIPVDVHVPGCPPRPEAFLQGVMLLQEKIRREE 153


>gi|152993807|ref|YP_001359528.1| NADH dehydrogenase subunit B [Sulfurovum sp. NBC37-1]
 gi|238065218|sp|A6QCG2|NUOB_SULNB RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|151425668|dbj|BAF73171.1| NADH-quinone oxidoreductase, chain B [Sulfurovum sp. NBC37-1]
          Length = 172

 Score =  218 bits (556), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 84/143 (58%), Positives = 109/143 (76%), Gaps = 1/143 (0%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
             +TSVD+LV W R+ SL  +T+GLACCA+EMM +   RYD +R G   RASPRQ+DVMI
Sbjct: 16  IALTSVDKLVNWGRSNSLWPLTYGLACCAIEMMASGASRYDFDRMGTIFRASPRQADVMI 75

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           +AGTL+ K +   RR+YDQM EP++VISMGSCAN GG ++ +Y+ V+G DRI+PVDIY+P
Sbjct: 76  LAGTLSKKHSEFARRLYDQMTEPKWVISMGSCANTGGMFN-TYATVQGVDRIIPVDIYLP 134

Query: 158 GCPPTAEALIYGILLLQKKIRRV 180
           GC P  E L Y +++LQKKIRR 
Sbjct: 135 GCAPRPETLQYALMMLQKKIRRE 157


>gi|154175216|ref|YP_001407461.1| NADH dehydrogenase subunit B [Campylobacter curvus 525.92]
 gi|254767791|sp|A7GW69|NUOB_CAMC5 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|112803227|gb|EAU00571.1| 50S ribosomal protein L10 [Campylobacter curvus 525.92]
          Length = 170

 Score =  218 bits (556), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 86/147 (58%), Positives = 112/147 (76%), Gaps = 1/147 (0%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
            ++T+VD+LV W R+ SL  +++GLACCA+EMM +   RYD +RFG   RASPR S+VMI
Sbjct: 16  IVLTTVDRLVQWGRSNSLWALSYGLACCAIEMMASGASRYDFDRFGTIFRASPRHSEVMI 75

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           +AGTLT K A   RR+YDQMPEP++VISMGSCAN GG ++ +YS V+G DRI+PVDIY+P
Sbjct: 76  IAGTLTKKHAEFTRRLYDQMPEPKWVISMGSCANTGGMFN-TYSTVQGVDRIIPVDIYLP 134

Query: 158 GCPPTAEALIYGILLLQKKIRRVGNVK 184
           GC P  E L Y +++LQKKIRR    +
Sbjct: 135 GCAPRPETLQYALMILQKKIRRQSAFR 161


>gi|78183815|ref|YP_376249.1| NADH dehydrogenase subunit B [Synechococcus sp. CC9902]
 gi|123582227|sp|Q3B0C2|NDHK_SYNS9 RecName: Full=NAD(P)H-quinone oxidoreductase subunit K; AltName:
           Full=NAD(P)H dehydrogenase I subunit K; AltName:
           Full=NDH-1 subunit K; Short=NDH-K
 gi|78168109|gb|ABB25206.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit [Synechococcus sp.
           CC9902]
          Length = 244

 Score =  218 bits (556), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 72/153 (47%), Positives = 107/153 (69%), Gaps = 2/153 (1%)

Query: 26  FSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA 85
              +++E++    ++TS+D L  WAR  SL  + +G ACC +E       R+D +RFG  
Sbjct: 23  TPEVTNELSE-NIILTSLDDLHNWARLSSLWPLLYGTACCFIEFAALLGSRFDFDRFGLV 81

Query: 86  PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVR 144
           PR+SPRQ+D++IVAGT+T KMA AL R+Y+QMPEP+YVI+MG+C   GG +   S + VR
Sbjct: 82  PRSSPRQADLLIVAGTVTMKMAPALVRLYEQMPEPKYVIAMGACTITGGMFSADSTTAVR 141

Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
           G D+++PVD+Y+PGCPP  EA+   ++ L+KK+
Sbjct: 142 GVDKLIPVDLYLPGCPPRPEAIFDAVIKLRKKV 174


>gi|89280639|ref|YP_514856.1| NADH dehydrogenase subunit K [Solanum lycopersicum]
 gi|91208992|ref|YP_538852.1| NADH dehydrogenase subunit K [Solanum bulbocastanum]
 gi|108773134|ref|YP_635643.1| NADH dehydrogenase subunit K [Solanum tuberosum]
 gi|84371899|gb|ABC56217.1| NADH-plastoquinone oxidoreductase subunit K [Solanum bulbocastanum]
 gi|84371987|gb|ABC56304.1| NADH-plastoquinone oxidoreductase subunit K [Solanum lycopersicum]
 gi|88656808|gb|ABD47061.1| NADH-plastoquinone oxidoreductase subunit K [Solanum tuberosum]
 gi|89241675|emb|CAJ32397.1| NADH dehydrogenase subunit K [Solanum lycopersicum]
          Length = 284

 Score =  218 bits (556), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 70/160 (43%), Positives = 105/160 (65%), Gaps = 1/160 (0%)

Query: 22  VDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLER 81
           +++    +         + T+++ L  W+R  SL  + +G +CC +E       R+D +R
Sbjct: 60  MNSIQFPLLDRTAPNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDR 119

Query: 82  FGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSY 140
           +G  PR+SPRQSD+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SY
Sbjct: 120 YGLVPRSSPRQSDLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSY 179

Query: 141 SVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           S VRG D+++PVD+Y+PGCPP  EA+I  I  L+KKI R 
Sbjct: 180 STVRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 219


>gi|242810530|ref|XP_002485599.1| NADH-plastoquinone oxidoreductase, putative [Talaromyces stipitatus
           ATCC 10500]
 gi|218716224|gb|EED15646.1| NADH-plastoquinone oxidoreductase, putative [Talaromyces stipitatus
           ATCC 10500]
          Length = 195

 Score =  218 bits (556), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 96/176 (54%), Positives = 126/176 (71%), Gaps = 4/176 (2%)

Query: 9   KIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVE 68
            +++      ++      S+   + +  G+++TSVDQ+V WAR  SL  ++F LACC +E
Sbjct: 19  SLVTSPPELPVKVP----SQERKDSSAAGYVLTSVDQIVNWARQNSLWALSFVLACCTIE 74

Query: 69  MMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGS 128
           MMQ SMP+YD +R G    ASPRQ+DVM+VAGT+T+KMA ALR+ YDQM EPR++I+MGS
Sbjct: 75  MMQVSMPQYDQDRLGIIFSASPRQADVMVVAGTVTSKMAPALRQCYDQMSEPRWLITMGS 134

Query: 129 CANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           CANGGGYYHY YSVVRG DRI+PVD+Y+PGC PT EA +YG   LQ KIR     +
Sbjct: 135 CANGGGYYHYIYSVVRGVDRIIPVDVYIPGCSPTPEAFLYGTFQLQNKIRTTKVTR 190


>gi|327349174|gb|EGE78031.1| NADH-ubiquinone oxidoreductase 20 kDa subunit [Ajellomyces
           dermatitidis ATCC 18188]
          Length = 172

 Score =  218 bits (556), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 94/159 (59%), Positives = 121/159 (76%)

Query: 19  LEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78
           +E+  +       +    G  + S+D +  W R  SL  ++ GLACC +EMM  SMPRYD
Sbjct: 1   MERSSSLLPSQDEKTGTMGHFLGSIDAVANWGRQASLWPISLGLACCGLEMMAVSMPRYD 60

Query: 79  LERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY 138
            +R G   RASPRQSD++IVAGT+TNKMA ALR VYDQMP+P++VISMGSCANGGGYYHY
Sbjct: 61  QDRLGTIFRASPRQSDLLIVAGTVTNKMAPALRLVYDQMPDPKWVISMGSCANGGGYYHY 120

Query: 139 SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
           SYSVVRG DR++PVD+Y+PGCPPTAEAL+Y I ++++K+
Sbjct: 121 SYSVVRGVDRLLPVDVYLPGCPPTAEALMYAISVVRRKL 159


>gi|126657571|ref|ZP_01728727.1| NADH dehydrogenase subunit B [Cyanothece sp. CCY0110]
 gi|126621275|gb|EAZ91988.1| NADH dehydrogenase subunit B [Cyanothece sp. CCY0110]
          Length = 247

 Score =  218 bits (556), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 69/151 (45%), Positives = 103/151 (68%), Gaps = 1/151 (0%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP 90
           ++   +  ++T+VD L  WAR  SL  + +G ACC +E       R+D +RFG  PR+SP
Sbjct: 30  TQDLSENIILTTVDDLHNWARLSSLWPLLYGTACCFIEFAALIGSRFDFDRFGLVPRSSP 89

Query: 91  RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGCDRI 149
           RQ+D++I AGT+T KMA AL R+Y++MP+P+YVI+MG+C   GG +   S + VRG D++
Sbjct: 90  RQADLIITAGTITMKMAPALVRLYEEMPDPKYVIAMGACTITGGMFSSDSTTAVRGVDKL 149

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           +PVD+Y+PGCPP  EA+   I+ L+KK+   
Sbjct: 150 IPVDVYIPGCPPRPEAIFDAIIKLRKKVSNE 180


>gi|197131364|gb|ACH47200.1| NADH-plastoquinone oxidoreductase subunit K [Pelargonium
           cotyledonis]
          Length = 227

 Score =  218 bits (556), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 70/160 (43%), Positives = 105/160 (65%), Gaps = 1/160 (0%)

Query: 22  VDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLER 81
           +++    +    T    + T+ + L  W+R  SL  + +G +CC +E       R+D +R
Sbjct: 1   MNSVEFPLLDRRTKNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDR 60

Query: 82  FGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSY 140
           +G  PR+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SY
Sbjct: 61  YGLVPRSSPRQADLVLTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSY 120

Query: 141 SVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           S VRG D+++PVD+Y+PGCPP  EA+I  I  L+KKI R 
Sbjct: 121 STVRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 160


>gi|290489708|gb|ADD31238.1| NADH-plastoquinone oxidoreductase subunit K protein [Dillenia
           indica]
          Length = 251

 Score =  218 bits (556), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 69/156 (44%), Positives = 101/156 (64%), Gaps = 1/156 (0%)

Query: 26  FSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA 85
             R +        + T+ + L  W+R  SL  + +G +CC +E       R+D +R+G  
Sbjct: 31  LDRTTQNSVISSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLV 90

Query: 86  PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVR 144
           PR+SPRQ+D+++ AGT+T KMA +L R+Y+QM EP+YVI+MG+C   GG +   SYS VR
Sbjct: 91  PRSSPRQADLILTAGTVTMKMAPSLVRLYEQMAEPKYVIAMGACTITGGMFSTDSYSTVR 150

Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           G D+++PVD+Y+PGCPP  EA+I  I  L+KKI R 
Sbjct: 151 GVDKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 186


>gi|74381713|emb|CAI53798.1| photosystem II G protein [Acorus calamus]
 gi|156573647|gb|ABU85157.1| NADH-plastoquinone oxidoreductase subunit K [Acorus americanus]
          Length = 297

 Score =  218 bits (556), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 69/154 (44%), Positives = 103/154 (66%), Gaps = 1/154 (0%)

Query: 28  RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
            +    T    + T+++ L  W+R  SL  + +G +CC +E       R+D +R+G  PR
Sbjct: 65  PLLDRTTPNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 124

Query: 88  ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146
           +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG 
Sbjct: 125 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 184

Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           D+++PVD+Y+PGCPP  EA+I  I  L+KK+ R 
Sbjct: 185 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKLSRE 218


>gi|218527904|sp|A6MM40|NDHK_BUXMI RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
          Length = 200

 Score =  218 bits (556), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 69/154 (44%), Positives = 102/154 (66%), Gaps = 1/154 (0%)

Query: 28  RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
            +    T    + T+ + L  W+R  SL  + +G +CC +E       R+D +R+G  PR
Sbjct: 7   PLVDRTTQNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66

Query: 88  ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146
           +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG 
Sbjct: 67  SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126

Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           D+++PVD+Y+PGCPP  EA+I  I  L+KK+ R 
Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKVSRE 160


>gi|117927477|ref|YP_872028.1| NADH dehydrogenase subunit B [Acidothermus cellulolyticus 11B]
 gi|238065066|sp|A0LRI2|NUOB_ACIC1 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|117647940|gb|ABK52042.1| NADH dehydrogenase subunit B [Acidothermus cellulolyticus 11B]
          Length = 184

 Score =  218 bits (556), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 81/152 (53%), Positives = 109/152 (71%), Gaps = 2/152 (1%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89
            E    GFL+T+V++ V W R  SL   TFGLACCA+EMM     RYDL RFG    RAS
Sbjct: 4   EEKIPGGFLLTTVEKAVGWVRKSSLWPATFGLACCAIEMMATGAGRYDLARFGMEVFRAS 63

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQ+D+MIVAG ++ KMA  LR++YDQMPEP++V++MG CA+ GG ++  Y++V+G D +
Sbjct: 64  PRQADLMIVAGRVSQKMAPVLRQIYDQMPEPKWVLAMGVCASSGGMFNN-YAIVQGVDHV 122

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
           VPVD+Y+PGCPP  E L++ IL L +KI+   
Sbjct: 123 VPVDMYLPGCPPRPEMLMHAILELHEKIKSTK 154


>gi|290489736|gb|ADD31252.1| NADH-plastoquinone oxidoreductase subunit K protein [Heuchera
           sanguinea]
          Length = 255

 Score =  218 bits (556), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 70/154 (45%), Positives = 102/154 (66%), Gaps = 1/154 (0%)

Query: 28  RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
            +    T    + T+ + L  W+R  SL  + +G +CC +E       R+D +R+G  PR
Sbjct: 37  PLLDRTTQNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 96

Query: 88  ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146
           +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG 
Sbjct: 97  SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 156

Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           D+++PVD+Y+PGCPP  EA+I  I  L+KKI R 
Sbjct: 157 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 190


>gi|159901492|ref|YP_001547739.1| NADH dehydrogenase subunit B [Herpetosiphon aurantiacus ATCC 23779]
 gi|238065032|sp|A9B478|NUOB2_HERA2 RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName:
           Full=NADH dehydrogenase I subunit B 2; AltName:
           Full=NDH-1 subunit B 2
 gi|159894531|gb|ABX07611.1| NADH-quinone oxidoreductase, B subunit [Herpetosiphon aurantiacus
           ATCC 23779]
          Length = 250

 Score =  218 bits (556), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 80/151 (52%), Positives = 109/151 (72%), Gaps = 1/151 (0%)

Query: 28  RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-AP 86
           +   ++  +G L T++++L  W R  S+  M FGLACCA+EM+ A+  RYD+ RFG    
Sbjct: 5   QTQMDLEQQGVLFTTINKLYNWGRRSSVWPMQFGLACCAIEMIAAAASRYDISRFGSELF 64

Query: 87  RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGC 146
           RASPRQ+DVMIVAGT+T KM   + R+++QMPEPRYVISMG+CA  GG +   Y+VVRG 
Sbjct: 65  RASPRQADVMIVAGTVTKKMVPQVVRLFNQMPEPRYVISMGACATSGGPFRDGYNVVRGV 124

Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
           D  VPVD+Y+PGCPP  EAL++ ++ LQ +I
Sbjct: 125 DLYVPVDVYIPGCPPRPEALLHALMTLQAQI 155


>gi|190893214|ref|YP_001979756.1| NADH-ubiquinone oxidoreductase, chain B [Rhizobium etli CIAT 652]
 gi|238065034|sp|B3PY57|NUOB2_RHIE6 RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName:
           Full=NADH dehydrogenase I subunit B 2; AltName:
           Full=NDH-1 subunit B 2
 gi|190698493|gb|ACE92578.1| NADH-ubiquinone oxidoreductase protein, chain B [Rhizobium etli
           CIAT 652]
          Length = 167

 Score =  218 bits (556), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 83/153 (54%), Positives = 113/153 (73%), Gaps = 1/153 (0%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP 90
           +       L T+ D ++ W+R+ +L   TFG+ACCA+EM+ A   RYDL+RFG   R SP
Sbjct: 5   NNAIRDSVLFTTADSIINWSRSSALWPETFGIACCAIEMISAGCARYDLDRFGVVFRPSP 64

Query: 91  RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150
           RQSDVMI+AGT+T K A  +RR+YDQMPEPR+VI+MG+CA  GG Y+ +Y+VV+G +  V
Sbjct: 65  RQSDVMIIAGTVTRKFAPVVRRLYDQMPEPRWVIAMGTCAISGGVYN-TYAVVQGSETFV 123

Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           PVD++VPGCPP  EAL++G LLLQ+KI+R   +
Sbjct: 124 PVDVHVPGCPPRPEALMHGFLLLQEKIKRSRAL 156


>gi|68164807|ref|YP_247603.1| NADH dehydrogenase subunit K [Cucumis sativus]
 gi|75317261|sp|Q4VZH1|NDHK_CUCSA RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
 gi|67511402|emb|CAJ00762.1| NADH dehydrogenase subunit K [Cucumis sativus]
 gi|74027105|gb|AAZ94655.1| NADH dehydrogenase 32 kDa subunit [Cucumis sativus]
 gi|115432808|gb|ABI97421.1| NADH-plastoquinone oxidoreductase subunit K [Cucumis sativus]
          Length = 226

 Score =  218 bits (556), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 70/154 (45%), Positives = 102/154 (66%), Gaps = 1/154 (0%)

Query: 28  RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
            +    T    + T+ + L  W+R  SL  + +G +CC +E       R+D +R+G  PR
Sbjct: 7   PLLDRTTQTSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66

Query: 88  ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146
           +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG 
Sbjct: 67  SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126

Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           D+++PVD+Y+PGCPP  EA+I  I  L+KKI R 
Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 160


>gi|218245900|ref|YP_002371271.1| NADH dehydrogenase subunit B [Cyanothece sp. PCC 8801]
 gi|257058948|ref|YP_003136836.1| NADH dehydrogenase subunit B [Cyanothece sp. PCC 8802]
 gi|238065003|sp|B7K0X4|NDHK_CYAP8 RecName: Full=NAD(P)H-quinone oxidoreductase subunit K; AltName:
           Full=NAD(P)H dehydrogenase I subunit K; AltName:
           Full=NDH-1 subunit K; Short=NDH-K
 gi|218166378|gb|ACK65115.1| NADH-quinone oxidoreductase, B subunit [Cyanothece sp. PCC 8801]
 gi|256589114|gb|ACV00001.1| NADH-quinone oxidoreductase, B subunit [Cyanothece sp. PCC 8802]
          Length = 250

 Score =  218 bits (555), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 73/180 (40%), Positives = 112/180 (62%), Gaps = 2/180 (1%)

Query: 3   LTTVNQKIISGQSSCSLEKVDADFSR-ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFG 61
           ++      ++       EK+    +R   ++   +  ++T+VD L  WAR  SL  + +G
Sbjct: 1   MSPNPTPDLTTIQRQQTEKILNPIARGQVTQDLSENIILTTVDDLHNWARLSSLWPLLYG 60

Query: 62  LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPR 121
            ACC +E       R+D +RFG  PR+SPRQ+D++I AGT+T KMA AL R+Y++MPEP+
Sbjct: 61  TACCFIEFAALIGSRFDFDRFGLVPRSSPRQADLIITAGTITMKMAPALVRLYEEMPEPK 120

Query: 122 YVISMGSCANGGGYY-HYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           YVI+MG+C   GG +   S + VRG D+++PVD+Y+PGCPP  EA+   I+ L+KK+   
Sbjct: 121 YVIAMGACTITGGMFSSDSTTAVRGVDKLIPVDVYIPGCPPRPEAIFDAIIKLRKKVSNE 180


>gi|320106231|ref|YP_004181821.1| NADH-quinone oxidoreductase subunit B [Terriglobus saanensis
           SP1PR4]
 gi|319924752|gb|ADV81827.1| NADH-quinone oxidoreductase, B subunit [Terriglobus saanensis
           SP1PR4]
          Length = 205

 Score =  218 bits (555), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 77/147 (52%), Positives = 109/147 (74%), Gaps = 2/147 (1%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQ 92
             +G ++ S+D  + W R  S+  MTFGLACCA+EMM     RYD+ RFG    R SPRQ
Sbjct: 48  QPEGIVLASMDAAINWVRKNSVWPMTFGLACCAIEMMSMGGSRYDIARFGAEVFRPSPRQ 107

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           SD+MI+AG ++ KMA  +RR+Y+QMPEP++VISMG+CA  GG ++  Y++++G ++I+PV
Sbjct: 108 SDLMIIAGRVSQKMAPVIRRLYEQMPEPKWVISMGACATSGGVFNN-YALLQGVNQIIPV 166

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179
           D+YVPGCPP  E L+Y I LLQ+KI++
Sbjct: 167 DLYVPGCPPRPEQLLYAITLLQEKIQQ 193


>gi|290489716|gb|ADD31242.1| NADH-plastoquinone oxidoreductase subunit K protein [Meliosma aff.
           cuneifolia Moore 333]
          Length = 285

 Score =  218 bits (555), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 70/175 (40%), Positives = 109/175 (62%), Gaps = 1/175 (0%)

Query: 7   NQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCA 66
           + K    + +     +++    +    T    + T+ + L  W+R  SL  + +G +CC 
Sbjct: 46  DNKKQKEEKNDIETVMNSIEFPLLERTTQNSVISTTSNDLSNWSRLSSLWPLLYGTSCCF 105

Query: 67  VEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISM 126
           +E       R+D +R+G  PR+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+M
Sbjct: 106 IEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAM 165

Query: 127 GSCANGGGYYH-YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           G+C   GG +   SYS VRG D+++PVD+Y+PGCPP  EA+I  I  L+KK+ R 
Sbjct: 166 GACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKKVSRE 220


>gi|260436695|ref|ZP_05790665.1| NAD(P)H-quinone oxidoreductase subunit K [Synechococcus sp. WH
           8109]
 gi|260414569|gb|EEX07865.1| NAD(P)H-quinone oxidoreductase subunit K [Synechococcus sp. WH
           8109]
          Length = 246

 Score =  218 bits (555), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 71/152 (46%), Positives = 104/152 (68%), Gaps = 1/152 (0%)

Query: 27  SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP 86
           +   +    +  ++TS+D L  WAR  SL  + +G ACC +E       R+D +RFG  P
Sbjct: 25  APTVTNDLSENVILTSLDDLHNWARLSSLWPLLYGTACCFIEFAALLGSRFDFDRFGLVP 84

Query: 87  RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRG 145
           R+SPRQ+D++IVAGT+T KMA AL R+Y+QMPEP+YVI+MG+C   GG +   S + VRG
Sbjct: 85  RSSPRQADLLIVAGTVTMKMAPALVRLYEQMPEPKYVIAMGACTITGGMFSADSTTAVRG 144

Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
            D+++PVD+Y+PGCPP  EA+   ++ L+KK+
Sbjct: 145 VDKLIPVDLYLPGCPPRPEAIFDAVIKLRKKV 176


>gi|333031513|ref|ZP_08459574.1| NAD(P)H-quinone oxidoreductase subunit K [Bacteroides coprosuis DSM
           18011]
 gi|332742110|gb|EGJ72592.1| NAD(P)H-quinone oxidoreductase subunit K [Bacteroides coprosuis DSM
           18011]
          Length = 214

 Score =  218 bits (555), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 79/182 (43%), Positives = 117/182 (64%), Gaps = 4/182 (2%)

Query: 1   MGLTTVNQKIISGQSSCSLE-KVDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMW 57
           M +   N+KI   +S    E K +     +  E+   G   +V  +D +V W R+ SL  
Sbjct: 1   MEIKKQNKKIPKIKSMAYDEFKNNDYLENMVEELRSNGTNVVVGVLDDVVNWGRSNSLWP 60

Query: 58  MTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQ 116
           +TF  +CC +E M     R+D  RFGF   R SPRQ+D ++VAGT+T+KMA  L+R+YDQ
Sbjct: 61  LTFATSCCGIEFMAIGAARHDFARFGFEVARPSPRQADFIMVAGTITDKMAPVLKRLYDQ 120

Query: 117 MPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKK 176
           M +P+YVI+ G+C   GG +  SY VV+G D+I+PVD+++PGCPP  EA+IYG++ LQ+K
Sbjct: 121 MADPKYVIACGACTITGGPFKNSYHVVKGIDKILPVDVFIPGCPPRPEAMIYGLMQLQRK 180

Query: 177 IR 178
           ++
Sbjct: 181 VK 182


>gi|327191021|gb|EGE58075.1| NADH-ubiquinone oxidoreductase protein, chain B [Rhizobium etli
           CNPAF512]
          Length = 167

 Score =  218 bits (555), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 83/153 (54%), Positives = 113/153 (73%), Gaps = 1/153 (0%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP 90
           +       L T+ D ++ W+R+ +L   TFG+ACCA+EM+ A   RYDL+RFG   R SP
Sbjct: 5   NNAIRDSVLFTTADSVINWSRSSALWPETFGIACCAIEMISAGCARYDLDRFGVVFRPSP 64

Query: 91  RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150
           RQSDVMI+AGT+T K A  +RR+YDQMPEPR+VI+MG+CA  GG Y+ +Y+VV+G +  V
Sbjct: 65  RQSDVMIIAGTVTRKFAPVVRRLYDQMPEPRWVIAMGTCAISGGVYN-TYAVVQGSETFV 123

Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           PVD++VPGCPP  EAL++G LLLQ+KI+R   +
Sbjct: 124 PVDVHVPGCPPRPEALMHGFLLLQEKIKRSRAL 156


>gi|323148834|ref|YP_004221927.1| NADH-plastoquinone oxidoreductase subunit K [Erodium carvifolium]
 gi|316926298|gb|ADU58151.1| NADH-plastoquinone oxidoreductase subunit K [Erodium carvifolium]
          Length = 227

 Score =  218 bits (555), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 71/148 (47%), Positives = 101/148 (68%), Gaps = 1/148 (0%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
           T    L T+ + L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPRQ+
Sbjct: 13  TQNSVLSTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 72

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGCDRIVPV 152
           D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++PV
Sbjct: 73  DLVLTAGTVTLKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 132

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRV 180
           D+Y+PGCPP  EA+I  I  L+KKI R 
Sbjct: 133 DVYLPGCPPKPEAVIDAITKLRKKISRE 160


>gi|256380664|ref|YP_003104324.1| NADH dehydrogenase subunit B [Actinosynnema mirum DSM 43827]
 gi|255924967|gb|ACU40478.1| NADH-quinone oxidoreductase, B subunit [Actinosynnema mirum DSM
           43827]
          Length = 182

 Score =  218 bits (555), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 87/148 (58%), Positives = 107/148 (72%), Gaps = 2/148 (1%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89
            E    G L+ SV++LV W R  SL   TFGLACCA+EMM    PRYDL RFG    RAS
Sbjct: 4   EEKLPNGVLLVSVEKLVNWTRKSSLWPATFGLACCAIEMMTTGAPRYDLARFGMEVFRAS 63

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQ+D+MIVAG +TNKMA  LR++YDQMPEPR+V++MG CA+ GG ++  Y+VV+G D I
Sbjct: 64  PRQADLMIVAGRVTNKMAPVLRQIYDQMPEPRWVLAMGVCASSGGMFNN-YAVVQGVDHI 122

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKI 177
           VPVD+Y+PGCPP  E LI  IL +  KI
Sbjct: 123 VPVDMYLPGCPPRPEMLIDAILKIHAKI 150


>gi|148241313|ref|YP_001226470.1| NADH dehydrogenase subunit B [Synechococcus sp. RCC307]
 gi|218527933|sp|A5GQF8|NDHK_SYNR3 RecName: Full=NAD(P)H-quinone oxidoreductase subunit K; AltName:
           Full=NAD(P)H dehydrogenase I subunit K; AltName:
           Full=NDH-1 subunit K; Short=NDH-K
 gi|147849623|emb|CAK27117.1| NAD(P)H-quinone oxidoreductase subunit K [Synechococcus sp. RCC307]
          Length = 242

 Score =  218 bits (555), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 71/145 (48%), Positives = 102/145 (70%), Gaps = 1/145 (0%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
             +  ++TS+D L  WAR  SL  + +G ACC +E       R+D +RFG  PR+SPRQ+
Sbjct: 29  LSENVILTSLDDLHNWARLSSLWPLLYGTACCFIEFAALIGSRFDFDRFGLVPRSSPRQA 88

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGCDRIVPV 152
           D++IVAGT+T KMA AL R+Y+QMPEP+YVI+MG+C   GG +   S + VRG D+++PV
Sbjct: 89  DLLIVAGTVTMKMAPALVRLYEQMPEPKYVIAMGACTITGGMFSADSTTAVRGVDKLIPV 148

Query: 153 DIYVPGCPPTAEALIYGILLLQKKI 177
           D+Y+PGCPP  EA+   ++ L+KK+
Sbjct: 149 DLYLPGCPPRPEAIFDAVIKLRKKV 173


>gi|290489740|gb|ADD31254.1| NADH-plastoquinone oxidoreductase subunit K protein [Oxalis
           latifolia]
          Length = 246

 Score =  218 bits (555), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 69/149 (46%), Positives = 101/149 (67%), Gaps = 1/149 (0%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
            T    + T+ + L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPRQ
Sbjct: 33  TTKNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQ 92

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGCDRIVP 151
           +D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++P
Sbjct: 93  ADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIP 152

Query: 152 VDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           VD+Y+PGCPP  EA+I  I  L+KKI + 
Sbjct: 153 VDVYLPGCPPKPEAVIDAITKLRKKISQE 181


>gi|82754631|gb|ABB90045.1| NADH dehydrogenase subunit K [Solanum tuberosum]
          Length = 284

 Score =  218 bits (555), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 70/160 (43%), Positives = 105/160 (65%), Gaps = 1/160 (0%)

Query: 22  VDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLER 81
           +++    +         + T+++ L  W+R  SL  + +G +CC +E       R+D +R
Sbjct: 60  MNSIQFPLLDRTAPNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDR 119

Query: 82  FGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSY 140
           +G  PR+SPRQSD+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SY
Sbjct: 120 YGLVPRSSPRQSDLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSY 179

Query: 141 SVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           S VRG D+++PVD+Y+PGCPP  EA+I  I  L+KKI R 
Sbjct: 180 STVRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 219


>gi|195953122|ref|YP_002121412.1| NADH-quinone oxidoreductase, B subunit [Hydrogenobaculum sp.
           Y04AAS1]
 gi|238065161|sp|B4U8H3|NUOB_HYDS0 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|195932734|gb|ACG57434.1| NADH-quinone oxidoreductase, B subunit [Hydrogenobaculum sp.
           Y04AAS1]
          Length = 177

 Score =  218 bits (555), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 84/156 (53%), Positives = 118/156 (75%), Gaps = 1/156 (0%)

Query: 29  ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88
           ++S I   GF+ T+VD+L++W R  +L  +T GLACCA+EMM A+  R+D++R G   RA
Sbjct: 1   MASSINGNGFITTTVDELLSWGRRNALWPVTIGLACCAIEMMHAAASRFDIDRLGMIFRA 60

Query: 89  SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 148
           SPRQ+DV+IVAGT+ NK+A  L+ V+DQMPEP++ ISMG CA+ GG +  +YS ++G DR
Sbjct: 61  SPRQADVLIVAGTVVNKVAPMLKLVWDQMPEPKWCISMGGCASAGGPFP-TYSTLQGIDR 119

Query: 149 IVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           I+PVD+Y+PGCPPT + LIYG+L LQ+KIR     +
Sbjct: 120 IIPVDVYIPGCPPTPQGLIYGLLELQRKIREKKVTR 155


>gi|139389268|ref|YP_001123034.1| photosystem II G protein [Aethionema grandiflorum]
 gi|218527880|sp|A4QJK3|NDHK_AETGR RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
 gi|134286230|dbj|BAF49858.1| photosystem II G protein [Aethionema grandiflorum]
          Length = 229

 Score =  218 bits (555), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 69/154 (44%), Positives = 102/154 (66%), Gaps = 1/154 (0%)

Query: 28  RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
            +    T    + T+++ L  W+R  SL  + +G +CC +E       R+D +R+G  PR
Sbjct: 7   PVLDRTTKNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66

Query: 88  ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146
           +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG 
Sbjct: 67  SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126

Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           D+++PVD+Y+PGCPP  EA+I  I  L+ KI R 
Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDAITKLRTKIARE 160


>gi|320353962|ref|YP_004195301.1| NADH dehydrogenase subunit B [Desulfobulbus propionicus DSM 2032]
 gi|320122464|gb|ADW18010.1| NADH dehydrogenase subunit B [Desulfobulbus propionicus DSM 2032]
          Length = 173

 Score =  218 bits (555), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 85/149 (57%), Positives = 109/149 (73%), Gaps = 1/149 (0%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           I     ++  +++LV W R GS+  +TFGLACCA+EMM A     DL+RFG   RASPRQ
Sbjct: 19  IPGANAILGPLNKLVNWGRAGSIWPVTFGLACCAIEMMDAGASTNDLDRFGILFRASPRQ 78

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           +D M+VAGTL+ KMA  LRRVYDQMPEPRYV++MGSCA  GG +  +Y+V +G D+I+PV
Sbjct: 79  ADCMVVAGTLSKKMAPVLRRVYDQMPEPRYVLAMGSCACSGGVF-DTYAVTQGVDQIIPV 137

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVG 181
           D+YVPGCPP  EAL+ G L LQ+KI +  
Sbjct: 138 DVYVPGCPPRPEALLEGFLKLQEKILKEQ 166


>gi|317156952|ref|XP_001826129.2| NADH dehydrogenase [ubiquinone] iron-sulfur protein 7 [Aspergillus
           oryzae RIB40]
          Length = 155

 Score =  218 bits (555), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 104/146 (71%), Positives = 121/146 (82%)

Query: 39  LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIV 98
           + T+ DQL+ WAR GSL  +TF LACC +EMM  SMPRYD +R G   RASPRQ+DVMIV
Sbjct: 5   VKTTTDQLINWARQGSLWPLTFALACCGIEMMHVSMPRYDQDRLGIIFRASPRQADVMIV 64

Query: 99  AGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPG 158
           AGT+TNKMA ALR++YDQMP+P++VISMGSCANGGGYY+YSYSVVRG DR+VPVDIYVPG
Sbjct: 65  AGTVTNKMAPALRQLYDQMPDPKWVISMGSCANGGGYYYYSYSVVRGVDRVVPVDIYVPG 124

Query: 159 CPPTAEALIYGILLLQKKIRRVGNVK 184
           CPPT EAL+Y I  LQKKIRR    +
Sbjct: 125 CPPTPEALMYAIFQLQKKIRRTKVTR 150


>gi|114054474|gb|ABI49867.1| NADH-plastoquinone oxidoreductase subunit K [Nandina domestica]
          Length = 285

 Score =  218 bits (555), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 71/175 (40%), Positives = 111/175 (63%), Gaps = 1/175 (0%)

Query: 7   NQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCA 66
           + K  + + +     +++    +   IT    + T+ + L  W+R  SL  + +G +CC 
Sbjct: 46  DNKKKNEEKNYIETVMNSIEFPLLDRITQNSVISTTSNDLSNWSRLSSLWPLLYGTSCCF 105

Query: 67  VEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISM 126
           +E       R+D +R+G  PR+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+M
Sbjct: 106 IEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAM 165

Query: 127 GSCANGGGYYH-YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           G+C   GG +   SYS VRG D+++PVD+Y+PGCPP  EA+I  I  L+KK+ R 
Sbjct: 166 GACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKKVSRE 220


>gi|242910158|ref|YP_002970648.1| NADH-plastoquinone oxidoreductase subunit K [Alsophila spinulosa]
 gi|218454827|gb|ACK77164.1| NADH-plastoquinone oxidoreductase subunit K [Alsophila spinulosa]
          Length = 251

 Score =  218 bits (555), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 70/184 (38%), Positives = 111/184 (60%), Gaps = 5/184 (2%)

Query: 3   LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKG----FLVTSVDQLVTWARTGSLMWM 58
           + +  +       S    + +   + I S    +G     L+ +++    W+R  SL  +
Sbjct: 1   MVSSPEYSSEKSKSRVDPRENIFINSIESMFPDRGASNSILLANINDFSNWSRLSSLWPL 60

Query: 59  TFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMP 118
            +G +CC +E       R+D +R+G  PR+SPRQ+D+++ AGT+T KMA +L R+Y+QMP
Sbjct: 61  LYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLIVTAGTITMKMAPSLVRLYEQMP 120

Query: 119 EPRYVISMGSCANGGGYYH-YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
           EP+YVI+MG+C   GG +   SYS VRG D+++PVD+Y+PGCPP  EA+I  +  L+KK+
Sbjct: 121 EPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDLYLPGCPPKPEAIIDAVTKLRKKM 180

Query: 178 RRVG 181
            R  
Sbjct: 181 AREN 184


>gi|163781785|ref|ZP_02176785.1| NADH dehydrogenase I chain B [Hydrogenivirga sp. 128-5-R1-1]
 gi|159883005|gb|EDP76509.1| NADH dehydrogenase I chain B [Hydrogenivirga sp. 128-5-R1-1]
          Length = 179

 Score =  217 bits (554), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 85/152 (55%), Positives = 115/152 (75%), Gaps = 1/152 (0%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           I   GF+ T+VD+L+ W R  +L  +T GLACCA+EMM A+  R+DL+R G   RASPRQ
Sbjct: 4   INSNGFVTTTVDELLKWGRRNALWPVTIGLACCAIEMMHAAASRFDLDRLGVIFRASPRQ 63

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           SDV+IVAGT+ NK+A  L+ ++DQMP+P++ ISMG C++ GG +  +YS ++G DRI+PV
Sbjct: 64  SDVLIVAGTVVNKVAPMLKLIWDQMPDPKWCISMGGCSSAGGPFP-TYSTLQGIDRIIPV 122

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           D+YVPGCPPT + LIYGIL LQ+KI+  G  K
Sbjct: 123 DVYVPGCPPTPQGLIYGILQLQRKIKEQGVTK 154


>gi|325126869|ref|YP_004286106.1| NADH-plastoquinone oxidoreductase subunit K [Fragaria vesca subsp.
           vesca]
 gi|324022781|gb|ADY15355.1| NADH-plastoquinone oxidoreductase subunit K [Fragaria vesca subsp.
           vesca]
          Length = 226

 Score =  217 bits (554), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 70/154 (45%), Positives = 101/154 (65%), Gaps = 1/154 (0%)

Query: 28  RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
            +    T    + T+   L  W+R  SL  + +G +CC +E       R+D +R+G  PR
Sbjct: 8   PLLDRTTQNSVISTTSSDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 67

Query: 88  ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146
           +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG 
Sbjct: 68  SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 127

Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           D+++PVD+Y+PGCPP  EA+I  I  L+KKI R 
Sbjct: 128 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 161


>gi|124024214|ref|YP_001018521.1| NADH dehydrogenase subunit B [Prochlorococcus marinus str. MIT
           9303]
 gi|218527919|sp|A2CCP6|NDHK_PROM3 RecName: Full=NAD(P)H-quinone oxidoreductase subunit K; AltName:
           Full=NAD(P)H dehydrogenase I subunit K; AltName:
           Full=NDH-1 subunit K; Short=NDH-K
 gi|123964500|gb|ABM79256.1| putative respiratory-chain NADH dehydrogenase subunit
           [Prochlorococcus marinus str. MIT 9303]
          Length = 250

 Score =  217 bits (554), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 73/152 (48%), Positives = 107/152 (70%), Gaps = 2/152 (1%)

Query: 27  SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP 86
             ++SE++    ++TS+D L  WAR  SL  + +G ACC +E       R+D +RFG  P
Sbjct: 24  PSVTSELSE-NIILTSLDDLHNWARLSSLWPLLYGTACCFIEFAALIGSRFDFDRFGLVP 82

Query: 87  RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRG 145
           R+SPRQ+D++IVAGT+T KMA AL R+Y+QMPEP+YVI+MG+C   GG +   S + VRG
Sbjct: 83  RSSPRQADLLIVAGTVTMKMAPALVRLYEQMPEPKYVIAMGACTITGGMFSADSTTAVRG 142

Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
            D+++PVD+Y+PGCPP  EA+   ++ L+KK+
Sbjct: 143 VDKLIPVDLYLPGCPPRPEAIFDAVIKLRKKV 174


>gi|116075555|ref|ZP_01472814.1| NADH dehydrogenase subunit B [Synechococcus sp. RS9916]
 gi|116066870|gb|EAU72625.1| NADH dehydrogenase subunit B [Synechococcus sp. RS9916]
          Length = 255

 Score =  217 bits (554), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 72/158 (45%), Positives = 106/158 (67%), Gaps = 1/158 (0%)

Query: 24  ADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFG 83
           A+ +   +    +  ++TS+D L  WAR  SL  + +G ACC +E       R+D +RFG
Sbjct: 27  AEGAPAVTTDLSENVILTSLDDLHNWARLSSLWPLLYGTACCFIEFAALIGSRFDFDRFG 86

Query: 84  FAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSV 142
             PR+SPRQ+D++IVAGT+T KMA AL R+Y+QMPEP+YVI+MG+C   GG +   S + 
Sbjct: 87  LVPRSSPRQADLLIVAGTVTMKMAPALVRLYEQMPEPKYVIAMGACTITGGMFSADSTTA 146

Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           VRG D+++PVD+Y+PGCPP  EA+   ++ L+KK+   
Sbjct: 147 VRGVDKLIPVDLYLPGCPPRPEAIFDAVIKLRKKVSNE 184


>gi|291285958|ref|YP_003502774.1| NADH-quinone oxidoreductase, B subunit [Denitrovibrio acetiphilus
           DSM 12809]
 gi|290883118|gb|ADD66818.1| NADH-quinone oxidoreductase, B subunit [Denitrovibrio acetiphilus
           DSM 12809]
          Length = 158

 Score =  217 bits (554), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 79/151 (52%), Positives = 107/151 (70%), Gaps = 1/151 (0%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
             +  L TS+D ++ + R GS+  +TFGLACCA+EMM     ++DL+R G   RA+PRQ+
Sbjct: 8   LPENVLTTSIDNVINYCRKGSIWPVTFGLACCAIEMMATGAAKFDLDRMGIIFRATPRQA 67

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD 153
           D+MIVAGT+T KMA  +R+VY QMPEP++VI+MGSCA  GG Y  +YS V+G D ++PVD
Sbjct: 68  DLMIVAGTVTRKMAPVVRKVYVQMPEPKWVIAMGSCATSGGIY-DTYSTVQGVDEVIPVD 126

Query: 154 IYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
            YVPGCPP  EAL+  I+ LQ KI     ++
Sbjct: 127 FYVPGCPPRPEALLDAIVALQSKIMTEKVLR 157


>gi|284038505|ref|YP_003388435.1| NADH-quinone oxidoreductase subunit beta [Spirosoma linguale DSM
           74]
 gi|283817798|gb|ADB39636.1| NADH-quinone oxidoreductase, B subunit [Spirosoma linguale DSM 74]
          Length = 176

 Score =  217 bits (554), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 88/153 (57%), Positives = 110/153 (71%), Gaps = 1/153 (0%)

Query: 27  SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP 86
              + +      ++   + L+ W+R  S+  M+FGLACCA+EMMQA    YDLERFG  P
Sbjct: 16  PSTTDKTGEASVIMMHSEDLLNWSREKSMWPMSFGLACCAIEMMQAFAASYDLERFGIFP 75

Query: 87  RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRG 145
           R SPRQSD+MIV+GT+T KMA  +RR+Y+QM EPRYVISMGSC+N GG Y    Y VV+G
Sbjct: 76  RPSPRQSDIMIVSGTVTFKMADRIRRLYEQMAEPRYVISMGSCSNCGGPYWQHGYHVVKG 135

Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
            DRI+PVD+YVPGCPP  EALI G + LQ+KIR
Sbjct: 136 VDRIIPVDVYVPGCPPRPEALIDGFIKLQEKIR 168


>gi|288928299|ref|ZP_06422146.1| NADH dehydrogenase I, B/C/D subunit [Prevotella sp. oral taxon 317
           str. F0108]
 gi|288331133|gb|EFC69717.1| NADH dehydrogenase I, B/C/D subunit [Prevotella sp. oral taxon 317
           str. F0108]
          Length = 207

 Score =  217 bits (554), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 75/161 (46%), Positives = 111/161 (68%), Gaps = 3/161 (1%)

Query: 21  KVDADFSRISSEITHKGF--LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78
           K +    +I +E+   G   +V S+DQ + W R+ SL  +TF  +CC +E M     RYD
Sbjct: 17  KDNDTLEQIMNELHEGGVNVVVGSLDQAINWGRSNSLWSLTFATSCCGIEFMSVGCARYD 76

Query: 79  LERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137
             RFGF   R SPRQ+D+++ AGT+TNKMA  ++R+YD+M +P+YVI++G CA  GG + 
Sbjct: 77  FARFGFEVTRNSPRQADLIMCAGTITNKMAPVMKRLYDEMADPKYVIAVGGCAISGGPFK 136

Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
            SY VVRG + IVPVD+++PGCPP  EA++YG++ LQ+K++
Sbjct: 137 SSYHVVRGIEEIVPVDVFIPGCPPRPEAILYGMMQLQRKVK 177


>gi|116071575|ref|ZP_01468843.1| NADH dehydrogenase beta subunit [Synechococcus sp. BL107]
 gi|116065198|gb|EAU70956.1| NADH dehydrogenase beta subunit [Synechococcus sp. BL107]
          Length = 244

 Score =  217 bits (554), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 72/153 (47%), Positives = 107/153 (69%), Gaps = 2/153 (1%)

Query: 26  FSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA 85
              +++E++    ++TS+D L  WAR  SL  + +G ACC +E       R+D +RFG  
Sbjct: 23  TPAVTNELSE-NIILTSLDDLHNWARLSSLWPLLYGTACCFIEFAALLGSRFDFDRFGLV 81

Query: 86  PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVR 144
           PR+SPRQ+D++IVAGT+T KMA AL R+Y+QMPEP+YVI+MG+C   GG +   S + VR
Sbjct: 82  PRSSPRQADLLIVAGTVTMKMAPALVRLYEQMPEPKYVIAMGACTITGGMFSADSTTAVR 141

Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
           G D+++PVD+Y+PGCPP  EA+   ++ L+KK+
Sbjct: 142 GVDKLIPVDLYLPGCPPRPEAIFDAVIKLRKKV 174


>gi|307069594|ref|YP_003878071.1| putative NADH:ubiquinone oxidoreductase, chain B [Candidatus
           Zinderia insecticola CARI]
 gi|306482854|gb|ADM89725.1| putative NADH:ubiquinone oxidoreductase, chain B [Candidatus
           Zinderia insecticola CARI]
          Length = 149

 Score =  217 bits (554), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 95/145 (65%), Positives = 117/145 (80%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           I++  F   S+ +L  W+ + SL  +TFGLACCA+EMM A   R+DL++FG   RASPRQ
Sbjct: 2   ISNTSFATFSIKKLKKWSYSKSLWPVTFGLACCAIEMMHAGSSRFDLDQFGLFFRASPRQ 61

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           SD++I+AGTL NKMA  LRR+YDQMP P++VISMGSCANGGGYYHYSYSVVRGC+ I+PV
Sbjct: 62  SDLIIIAGTLCNKMAPVLRRIYDQMPIPKWVISMGSCANGGGYYHYSYSVVRGCNNIIPV 121

Query: 153 DIYVPGCPPTAEALIYGILLLQKKI 177
           DIYVPGCPPT E L+Y I+ L+KKI
Sbjct: 122 DIYVPGCPPTPETLLYSIIQLKKKI 146


>gi|257054393|ref|YP_003132225.1| NADH dehydrogenase subunit B [Saccharomonospora viridis DSM 43017]
 gi|256584265|gb|ACU95398.1| NADH dehydrogenase subunit B [Saccharomonospora viridis DSM 43017]
          Length = 182

 Score =  217 bits (554), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 79/149 (53%), Positives = 107/149 (71%), Gaps = 2/149 (1%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89
            E    GFL+T+++ +V WAR  S+   TFGLACCA+EMM     RYD+ RFG     A+
Sbjct: 4   EEKLPNGFLLTTLEGVVNWARKNSMWPATFGLACCAIEMMTTGGSRYDIARFGMERFAAT 63

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQ+D+MIVAG +T KMA  LR++YDQMPEP++V++MG CA+ GG ++  Y+VV+G D I
Sbjct: 64  PRQADLMIVAGRVTQKMAPVLRQIYDQMPEPKWVLAMGVCASSGGMFNN-YAVVQGVDHI 122

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           VPVD+Y+PGCPP  E L+  IL L  K++
Sbjct: 123 VPVDMYLPGCPPRPEMLLDAILKLHAKVQ 151


>gi|197131356|gb|ACH47196.1| NADH-plastoquinone oxidoreductase subunit K [Geranium macrorrhizum]
          Length = 217

 Score =  217 bits (554), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 71/148 (47%), Positives = 101/148 (68%), Gaps = 1/148 (0%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
           T    L T+ + L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPRQ+
Sbjct: 13  TQNSVLSTTPNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 72

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGCDRIVPV 152
           D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++PV
Sbjct: 73  DLVLTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 132

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRV 180
           D+Y+PGCPP  EA+I  I  L+KKI R 
Sbjct: 133 DVYLPGCPPKPEAVIDAITKLRKKISRE 160


>gi|290489724|gb|ADD31246.1| NADH-plastoquinone oxidoreductase subunit K protein [Berberidopsis
           corallina]
          Length = 285

 Score =  217 bits (554), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 70/154 (45%), Positives = 103/154 (66%), Gaps = 1/154 (0%)

Query: 28  RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
            +    T    ++T+ + L  W+R  SL  + +G +CC +E       R+D +R+G  PR
Sbjct: 67  PLLDRTTQNSAILTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 126

Query: 88  ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146
           +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG 
Sbjct: 127 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 186

Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           D+++PVD+Y+PGCPP  EA+I  I  L+KKI R 
Sbjct: 187 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 220


>gi|115531919|ref|YP_784075.1| NADH-plastoquinone oxidoreductase subunit K [Pelargonium x
           hortorum]
 gi|122164275|sp|Q06FV6|NDHK_PELHO RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
 gi|112382073|gb|ABI17266.1| NADH-plastoquinone oxidoreductase subunit K [Pelargonium x
           hortorum]
          Length = 227

 Score =  217 bits (554), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 70/160 (43%), Positives = 105/160 (65%), Gaps = 1/160 (0%)

Query: 22  VDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLER 81
           +++    +    T    + T+ + L  W+R  SL  + +G +CC +E       R+D +R
Sbjct: 1   MNSVEFPLLDRRTKNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDR 60

Query: 82  FGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSY 140
           +G  PR+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SY
Sbjct: 61  YGLVPRSSPRQADLVLTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSY 120

Query: 141 SVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           S VRG D+++PVD+Y+PGCPP  EA+I  I  L+KKI R 
Sbjct: 121 STVRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 160


>gi|21228592|ref|NP_634514.1| F420H2 dehydrogenase subunit [Methanosarcina mazei Go1]
 gi|7649014|gb|AAF65732.1|AF228525_2 F420H2 dehydrogenase subunit FpoB [Methanosarcina mazei Go1]
 gi|20907086|gb|AAM32186.1| F420H2 dehydrogenase subunit [Methanosarcina mazei Go1]
          Length = 184

 Score =  217 bits (554), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 74/173 (42%), Positives = 104/173 (60%), Gaps = 1/173 (0%)

Query: 6   VNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACC 65
           V +   +       E+V    +  +S I H     T    ++ W R  SL +MT  + CC
Sbjct: 4   VKETKTNNSKENPEEEVPGVITTTTSAI-HNFLKKTKAQDIINWGRKNSLWFMTQPMGCC 62

Query: 66  AVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVIS 125
            VEM+      YD +RFG  PR SPR +DVMI++G +T K   AL+R++DQMP P++VI+
Sbjct: 63  GVEMIATGCAHYDTDRFGIIPRNSPRHADVMIISGYVTKKYLPALKRLWDQMPAPKWVIA 122

Query: 126 MGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           MG CA  GG ++ SYS V+  D I P+D+Y+PGCPP  EALI G + LQ+KI+
Sbjct: 123 MGDCAISGGPFYESYSTVQNIDEIFPIDVYIPGCPPRPEALIQGFVELQEKIK 175


>gi|148238589|ref|YP_001223976.1| NADH dehydrogenase subunit B [Synechococcus sp. WH 7803]
 gi|218527932|sp|A5GIB4|NDHK_SYNPW RecName: Full=NAD(P)H-quinone oxidoreductase subunit K; AltName:
           Full=NAD(P)H dehydrogenase I subunit K; AltName:
           Full=NDH-1 subunit K; Short=NDH-K
 gi|147847128|emb|CAK22679.1| NAD(P)H-quinone oxidoreductase subunit K [Synechococcus sp. WH
           7803]
          Length = 248

 Score =  217 bits (554), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 73/155 (47%), Positives = 107/155 (69%), Gaps = 1/155 (0%)

Query: 24  ADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFG 83
           AD +   ++   +  ++TS+D L  WAR  SL  + +G ACC +E       R+D +RFG
Sbjct: 26  ADGAPTVTQDLSENVILTSLDDLHNWARLSSLWPLLYGTACCFIEFAALLGSRFDFDRFG 85

Query: 84  FAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSV 142
             PR+SPRQ+D++IVAGT+T KMA AL R+Y+QMPEP+YVI+MG+C   GG +   S + 
Sbjct: 86  LVPRSSPRQADLLIVAGTVTMKMAPALVRLYEQMPEPKYVIAMGACTITGGMFSADSTTA 145

Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
           VRG D+++PVD+Y+PGCPP  EA+   ++ L+KK+
Sbjct: 146 VRGVDKLIPVDLYMPGCPPRPEAIFDAVIKLRKKV 180


>gi|149909804|ref|ZP_01898455.1| NuoB2 NADH I CHAIN B [Moritella sp. PE36]
 gi|149807136|gb|EDM67092.1| NuoB2 NADH  I CHAIN B [Moritella sp. PE36]
          Length = 181

 Score =  217 bits (553), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 83/147 (56%), Positives = 111/147 (75%), Gaps = 1/147 (0%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP 90
           +E      L T+ D ++ W+R  SL   TFG+ACCA+EM+ A   RYDL+RFG   R+SP
Sbjct: 5   TERYKDNVLFTTSDSIINWSRKSSLWPETFGIACCAIEMIAAGCARYDLDRFGVVFRSSP 64

Query: 91  RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150
           RQSDVMI+AGT+T KMA  +RR+YDQMPEPRYVI+MG+CA  GG Y+ +YSVV+G D  V
Sbjct: 65  RQSDVMIIAGTVTKKMAPIIRRLYDQMPEPRYVIAMGTCAISGGVYN-TYSVVQGSDLFV 123

Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKI 177
           PVD++V GCPP  +AL++ ++LLQ++I
Sbjct: 124 PVDVHVAGCPPRPDALLHAMVLLQQQI 150


>gi|290489738|gb|ADD31253.1| NADH-plastoquinone oxidoreductase subunit K protein [Liquidambar
           styraciflua]
          Length = 285

 Score =  217 bits (553), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 70/154 (45%), Positives = 102/154 (66%), Gaps = 1/154 (0%)

Query: 28  RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
            +    T    + T+ + L  W+R  SL  + +G +CC +E       R+D +R+G  PR
Sbjct: 67  PLLDRTTQNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 126

Query: 88  ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146
           +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG 
Sbjct: 127 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 186

Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           D+++PVD+Y+PGCPP  EA+I  I  L+KKI R 
Sbjct: 187 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 220


>gi|284992924|ref|YP_003411478.1| NADH-quinone oxidoreductase subunit B [Geodermatophilus obscurus
           DSM 43160]
 gi|284066169|gb|ADB77107.1| NADH-quinone oxidoreductase, B subunit [Geodermatophilus obscurus
           DSM 43160]
          Length = 226

 Score =  217 bits (553), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 83/151 (54%), Positives = 105/151 (69%), Gaps = 2/151 (1%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89
            E    G L+TSV++LV W R  SL   TFGLACCA+EMM     RYDL RFG    RAS
Sbjct: 4   EEKLPSGVLLTSVEKLVNWTRKSSLWPATFGLACCAIEMMATGAGRYDLARFGMEVFRAS 63

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQ+D+MIVAG ++ KMA  LR++YDQMPEPR+V++MG CA+ GG ++  Y++V+G D +
Sbjct: 64  PRQADLMIVAGRVSQKMAPVLRQIYDQMPEPRWVLAMGVCASSGGMFNN-YAIVQGVDHV 122

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           VPVD+Y+PGCPP  E L   IL L  KI   
Sbjct: 123 VPVDMYLPGCPPRPEMLTDAILKLHHKIMHE 153


>gi|229577758|ref|YP_002836094.1| NADH-plastoquinone oxidoreductase subunit K [Megaleranthis
           saniculifolia]
 gi|226933886|gb|ACO92019.1| NADH-plastoquinone oxidoreductase subunit K [Megaleranthis
           saniculifolia]
          Length = 217

 Score =  217 bits (553), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 70/158 (44%), Positives = 105/158 (66%), Gaps = 2/158 (1%)

Query: 25  DFSRISSEITHKG-FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFG 83
           +F  +   I +    + T+ + L  W+R  SL  + +G +CC +E       R+D +R+G
Sbjct: 5   EFPLLDRTIQNSNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYG 64

Query: 84  FAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSV 142
             PR+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS 
Sbjct: 65  LVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYST 124

Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           VRG D+++PVD+Y+PGCPP  EA+I  I  L+KK+ R 
Sbjct: 125 VRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKKVSRE 162


>gi|172036678|ref|YP_001803179.1| NADH dehydrogenase subunit B [Cyanothece sp. ATCC 51142]
 gi|218527887|sp|B1WZG1|NDHK_CYAA5 RecName: Full=NAD(P)H-quinone oxidoreductase subunit K; AltName:
           Full=NAD(P)H dehydrogenase I subunit K; AltName:
           Full=NDH-1 subunit K; Short=NDH-K
 gi|171698132|gb|ACB51113.1| NADH dehydrogenase subunit K [Cyanothece sp. ATCC 51142]
          Length = 247

 Score =  217 bits (553), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 69/151 (45%), Positives = 103/151 (68%), Gaps = 1/151 (0%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP 90
           ++   +  ++T+VD L  WAR  SL  + +G ACC +E       R+D +RFG  PR+SP
Sbjct: 30  TQDLSENIILTTVDDLHNWARLSSLWPLLYGTACCFIEFAALIGSRFDFDRFGLVPRSSP 89

Query: 91  RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGCDRI 149
           RQ+D++I AGT+T KMA AL R+Y++MP+P+YVI+MG+C   GG +   S + VRG D++
Sbjct: 90  RQADLIITAGTITMKMAPALVRLYEEMPDPKYVIAMGACTITGGMFSSDSTTAVRGVDKL 149

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           +PVD+Y+PGCPP  EA+   I+ L+KK+   
Sbjct: 150 IPVDVYIPGCPPRPEAIFDAIIKLRKKVSNE 180


>gi|148262416|ref|YP_001229122.1| trifunctional NADH dehydrogenase I subunit B/C/D [Geobacter
           uraniireducens Rf4]
 gi|218528048|sp|A5GCZ4|NUBCD_GEOUR RecName: Full=NADH-quinone oxidoreductase subunit B/C/D; AltName:
           Full=NADH dehydrogenase I subunit B/C/D; AltName:
           Full=NDH-1 subunit B/C/D
 gi|146395916|gb|ABQ24549.1| NADH dehydrogenase subunit D / NADH dehydrogenase subunit B / NADH
           dehydrogenase subunit C [Geobacter uraniireducens Rf4]
          Length = 793

 Score =  217 bits (553), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 77/150 (51%), Positives = 107/150 (71%), Gaps = 2/150 (1%)

Query: 30  SSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RA 88
                H   ++ ++D L+ W R  SL  M FGL+CC VEMM +   RYD+ RFG    R 
Sbjct: 4   QDATPHNNVILANLDDLINWGRANSLWPMFFGLSCCFVEMMTSFTSRYDISRFGAEVLRG 63

Query: 89  SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 148
           +PR++D+M++AGT+  KMA ++ R+Y+QM EPR+VISMGSCAN GG Y   YSVV+G ++
Sbjct: 64  TPREADLMVIAGTVFKKMAPSILRLYEQMAEPRWVISMGSCANSGGMY-DVYSVVQGVNQ 122

Query: 149 IVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           I+PVD+YVPGCPP  EA + G++LLQ+KI+
Sbjct: 123 IIPVDVYVPGCPPRPEAFLQGLMLLQEKIK 152


>gi|154795221|ref|YP_740569.2| NADH-plastoquinone oxidoreductase subunit K [Platanus occidentalis]
 gi|218527952|sp|Q09G42|NDHK_PLAOC RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
          Length = 225

 Score =  217 bits (553), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 69/154 (44%), Positives = 102/154 (66%), Gaps = 1/154 (0%)

Query: 28  RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
            +    T    + T+ + L  W+R  SL  + +G +CC +E       R+D +R+G  PR
Sbjct: 7   PLLDRTTQNSVISTTPNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66

Query: 88  ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146
           +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG 
Sbjct: 67  SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126

Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           D+++PVD+Y+PGCPP  EA+I  I  L+KK+ R 
Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKVSRE 160


>gi|218527934|sp|A9QC82|NDHK_TRACE RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
 gi|156598845|gb|ABU85675.1| NADH-plastoquinone oxidoreductase subunit K [Trachelium caeruleum]
          Length = 227

 Score =  217 bits (553), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 72/157 (45%), Positives = 106/157 (67%), Gaps = 2/157 (1%)

Query: 25  DFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF 84
           DF  ++   T    + T+ ++L  W+R  SL  + +G +CC +E       R+D +R+G 
Sbjct: 5   DFPLLNRR-TQNSVISTTPNELSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGL 63

Query: 85  APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVV 143
            PR+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS V
Sbjct: 64  VPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTV 123

Query: 144 RGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           RG D+++PVD+Y+PGCPP  EA+I  I  L+KKI R 
Sbjct: 124 RGVDKLLPVDVYLPGCPPKPEAVIDAITKLRKKISRE 160


>gi|225544128|ref|YP_002720116.1| ndhK [Jatropha curcas]
 gi|224979569|gb|ACN72696.1| ndhK [Jatropha curcas]
          Length = 225

 Score =  217 bits (553), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 70/154 (45%), Positives = 103/154 (66%), Gaps = 1/154 (0%)

Query: 28  RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
            +  + T    + T+ + L  W+R  SL  + +G +CC +E       R+D +R+G  PR
Sbjct: 7   PLLDQTTKISVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66

Query: 88  ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146
           +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG 
Sbjct: 67  SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126

Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           D+++PVD+Y+PGCPP  EA+I  I  L+KKI R 
Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 160


>gi|331699311|ref|YP_004335550.1| NAD(P)H-quinone oxidoreductase subunit K [Pseudonocardia
           dioxanivorans CB1190]
 gi|326954000|gb|AEA27697.1| NAD(P)H-quinone oxidoreductase subunit K [Pseudonocardia
           dioxanivorans CB1190]
          Length = 183

 Score =  217 bits (553), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 84/148 (56%), Positives = 108/148 (72%), Gaps = 2/148 (1%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89
            E    G L+T+V++LV W R  SL   TFGLACCA+EMM    PRYDL RFG    RAS
Sbjct: 4   EEKLPSGVLLTNVEKLVNWTRKSSLWPATFGLACCAIEMMTTGAPRYDLARFGMEVFRAS 63

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQ+D+MIVAG ++NKMA  LR++YDQMPEPR+V++MG CA+ GG ++  Y++V+G D +
Sbjct: 64  PRQADLMIVAGRVSNKMAPVLRQIYDQMPEPRWVLAMGVCASSGGMFNN-YAIVQGVDHV 122

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKI 177
           VPVD+Y+PGCPP  E LI  IL +  KI
Sbjct: 123 VPVDMYLPGCPPRPEMLIDAILKIHAKI 150


>gi|318042790|ref|ZP_07974746.1| NADH dehydrogenase subunit B [Synechococcus sp. CB0101]
          Length = 241

 Score =  217 bits (553), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 70/145 (48%), Positives = 102/145 (70%), Gaps = 1/145 (0%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
             +  ++T++D L  WAR  SL  + +G ACC +E       R+D +RFG  PR+SPRQ+
Sbjct: 30  LSENVILTTLDDLHNWARLSSLWPLLYGTACCFIEFAALIGSRFDFDRFGLVPRSSPRQA 89

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGCDRIVPV 152
           D++IVAGT+T KMA AL R+Y+QMPEP+YVI+MG+C   GG +   S + VRG D+++PV
Sbjct: 90  DLLIVAGTVTMKMAPALVRLYEQMPEPKYVIAMGACTITGGMFSADSTTAVRGVDKLIPV 149

Query: 153 DIYVPGCPPTAEALIYGILLLQKKI 177
           D+Y+PGCPP  EA+   ++ L+KK+
Sbjct: 150 DLYLPGCPPRPEAIFDAVIKLRKKV 174


>gi|88808082|ref|ZP_01123593.1| NADH dehydrogenase beta subunit [Synechococcus sp. WH 7805]
 gi|88788121|gb|EAR19277.1| NADH dehydrogenase beta subunit [Synechococcus sp. WH 7805]
          Length = 248

 Score =  217 bits (553), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 73/155 (47%), Positives = 107/155 (69%), Gaps = 1/155 (0%)

Query: 24  ADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFG 83
           AD +   ++   +  ++TS+D L  WAR  SL  + +G ACC +E       R+D +RFG
Sbjct: 26  ADGAPTVTQDLSENVILTSLDDLHNWARLSSLWPLLYGTACCFIEFAALLGSRFDFDRFG 85

Query: 84  FAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSV 142
             PR+SPRQ+D++IVAGT+T KMA AL R+Y+QMPEP+YVI+MG+C   GG +   S + 
Sbjct: 86  LVPRSSPRQADLLIVAGTVTMKMAPALVRLYEQMPEPKYVIAMGACTITGGMFSADSTTA 145

Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
           VRG D+++PVD+Y+PGCPP  EA+   ++ L+KK+
Sbjct: 146 VRGVDKLIPVDLYMPGCPPRPEAIFDAVIKLRKKV 180


>gi|218527896|sp|B2XWK8|NDHK_FAGEA RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
          Length = 225

 Score =  217 bits (553), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 70/146 (47%), Positives = 101/146 (69%), Gaps = 1/146 (0%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           IT    + T+ + L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPRQ
Sbjct: 12  ITPNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQ 71

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGCDRIVP 151
           +D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++P
Sbjct: 72  ADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIP 131

Query: 152 VDIYVPGCPPTAEALIYGILLLQKKI 177
           VD+Y+PGCPP  EA+I  I  L+KKI
Sbjct: 132 VDVYLPGCPPKPEAVIDAITKLRKKI 157


>gi|290489718|gb|ADD31243.1| NADH-plastoquinone oxidoreductase subunit K protein [Nelumbo
           nucifera]
          Length = 285

 Score =  217 bits (553), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 69/148 (46%), Positives = 102/148 (68%), Gaps = 1/148 (0%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
           T    + T+++ L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPRQ+
Sbjct: 73  TQNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 132

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGCDRIVPV 152
           D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++PV
Sbjct: 133 DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 192

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRV 180
           D+Y+PGCPP  EA+I  I  L+KK+ R 
Sbjct: 193 DVYLPGCPPKPEAVIDAITKLRKKVSRE 220


>gi|319955917|ref|YP_004167180.1| NADH dehydrogenase subunit b [Nitratifractor salsuginis DSM 16511]
 gi|319418321|gb|ADV45431.1| NADH dehydrogenase subunit B [Nitratifractor salsuginis DSM 16511]
          Length = 170

 Score =  217 bits (553), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 82/143 (57%), Positives = 109/143 (76%), Gaps = 1/143 (0%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
             +T+VD+L+ W R+ SL  +T+GLACCA+EMM +   R+D +R G   RASPRQ+DVMI
Sbjct: 16  VALTTVDKLLNWGRSNSLWPLTYGLACCAIEMMASGASRFDFDRMGVIFRASPRQADVMI 75

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           +AGTL+ K A   RR+YDQM EP++VISMGSCAN GG ++ +Y+ V+G DRI+PVDIY+P
Sbjct: 76  LAGTLSKKHAEFARRLYDQMAEPKWVISMGSCANTGGMFN-TYATVQGVDRIIPVDIYLP 134

Query: 158 GCPPTAEALIYGILLLQKKIRRV 180
           GC P  E L Y +++LQKKIRR 
Sbjct: 135 GCAPRPETLQYAMMMLQKKIRRE 157


>gi|78186619|ref|YP_374662.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit [Chlorobium
           luteolum DSM 273]
 gi|123583245|sp|Q3B4W2|NUOB_PELLD RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|78166521|gb|ABB23619.1| NADH dehydrogenase subunit B [Chlorobium luteolum DSM 273]
          Length = 189

 Score =  217 bits (553), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 86/147 (58%), Positives = 109/147 (74%), Gaps = 1/147 (0%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
            +    LV  VD ++ WAR  SL  M FGLACCA+EMM  +   YDLERFG  PR+SPRQ
Sbjct: 8   FSRDNVLVAPVDAVLNWARLSSLWPMGFGLACCAIEMMATNASNYDLERFGIFPRSSPRQ 67

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVP 151
           SD+MIVAGT++ KMA  + R+Y+QMPEPRYV+SMGSC+N GG Y    Y V++G DR++P
Sbjct: 68  SDLMIVAGTVSMKMAERVVRLYEQMPEPRYVLSMGSCSNCGGPYWEHGYHVLKGVDRVIP 127

Query: 152 VDIYVPGCPPTAEALIYGILLLQKKIR 178
           VD+YVPGCPP  EALI G++ +Q+ IR
Sbjct: 128 VDVYVPGCPPRPEALIGGLMKVQELIR 154


>gi|86359327|ref|YP_471219.1| NADH-ubiquinone oxidoreductase chain B protein [Rhizobium etli CFN
           42]
 gi|123510666|sp|Q2K3U4|NUOB3_RHIEC RecName: Full=NADH-quinone oxidoreductase subunit B 3; AltName:
           Full=NADH dehydrogenase I subunit B 3; AltName:
           Full=NDH-1 subunit B 3
 gi|86283429|gb|ABC92492.1| NADH-ubiquinone oxidoreductase chain B protein [Rhizobium etli CFN
           42]
          Length = 167

 Score =  217 bits (553), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 83/153 (54%), Positives = 113/153 (73%), Gaps = 1/153 (0%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP 90
           +       L T+ D ++ W+R+ +L   TFG+ACCA+EM+ A   RYDL+RFG   R SP
Sbjct: 5   NNAIRDSVLFTTADSVINWSRSSALWPETFGIACCAIEMISAGCARYDLDRFGVVFRPSP 64

Query: 91  RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150
           RQSDVMI+AGT+T K A  +RR+YDQMPEPR+VI+MG+CA  GG Y+ +Y+VV+G +  V
Sbjct: 65  RQSDVMIIAGTVTRKFAPVVRRLYDQMPEPRWVIAMGTCAISGGVYN-TYAVVQGSETFV 123

Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           PVD++VPGCPP  EAL++G LLLQ+KI+R   +
Sbjct: 124 PVDVHVPGCPPRPEALMHGFLLLQEKIKRSRAL 156


>gi|218527892|sp|A6MMC6|NDHK_CHLSC RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
          Length = 222

 Score =  217 bits (553), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 67/151 (44%), Positives = 100/151 (66%), Gaps = 1/151 (0%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP 90
                   + T+ + L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SP
Sbjct: 10  ERTAQNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSP 69

Query: 91  RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGCDRI 149
           RQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D++
Sbjct: 70  RQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKL 129

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           +PVD+Y+PGCPP  EA+I  I  L+K++ R 
Sbjct: 130 IPVDVYLPGCPPKPEAVIDAITKLRKRVSRE 160


>gi|149390272|ref|YP_001294102.1| NADH-plastoquinone oxidoreductase subunit K [Chloranthus spicatus]
 gi|146744192|gb|ABQ43264.1| NADH-plastoquinone oxidoreductase subunit K [Chloranthus spicatus]
          Length = 275

 Score =  217 bits (553), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 70/181 (38%), Positives = 112/181 (61%), Gaps = 4/181 (2%)

Query: 1   MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTF 60
           +G+   N+K         +  ++      +++      + T+ + L  W+R  SL  + +
Sbjct: 36  IGMVLKNKKEGKDNIETIMNSIEFPLFERTAQ---NSVISTTSNDLSNWSRLSSLWPLLY 92

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           G +CC +E       R+D +R+G  PR+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP
Sbjct: 93  GTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEP 152

Query: 121 RYVISMGSCANGGGYYH-YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           +YVI+MG+C   GG +   SYS VRG D+++PVD+Y+PGCPP  EA+I  I  L+K++ R
Sbjct: 153 KYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKRVSR 212

Query: 180 V 180
            
Sbjct: 213 E 213


>gi|169794077|ref|YP_001718441.1| NADH dehydrogenase subunit K [Manihot esculenta]
 gi|326909397|ref|YP_004327666.1| NADH dehydrogenase subunit K [Hevea brasiliensis]
 gi|218527912|sp|B1NWF4|NDHK_MANES RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
 gi|157695889|gb|ABV66158.1| NADH-plastoquinone oxidoreductase subunit K [Manihot esculenta]
 gi|308523511|gb|ADO33561.1| NADH dehydrogenase subunit K [Hevea brasiliensis]
          Length = 225

 Score =  217 bits (552), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 70/154 (45%), Positives = 102/154 (66%), Gaps = 1/154 (0%)

Query: 28  RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
            +    T    + T+ + L  W+R  SL  + +G +CC +E       R+D +R+G  PR
Sbjct: 7   PLLDRTTQISVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66

Query: 88  ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146
           +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG 
Sbjct: 67  SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126

Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           D+++PVD+Y+PGCPP  EA+I  I  L+KKI R 
Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 160


>gi|113477002|ref|YP_723063.1| NADH dehydrogenase subunit B [Trichodesmium erythraeum IMS101]
 gi|123160442|sp|Q10YT4|NDHK_TRIEI RecName: Full=NAD(P)H-quinone oxidoreductase subunit K; AltName:
           Full=NAD(P)H dehydrogenase I subunit K; AltName:
           Full=NDH-1 subunit K; Short=NDH-K
 gi|110168050|gb|ABG52590.1| NADH-quinone oxidoreductase, B subunit [Trichodesmium erythraeum
           IMS101]
          Length = 240

 Score =  217 bits (552), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 75/175 (42%), Positives = 109/175 (62%), Gaps = 11/175 (6%)

Query: 4   TTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLA 63
              NQKII+      +E+       +S        ++T+VD L  WA+  SL  + +G A
Sbjct: 5   PNQNQKIINP-----IEESPTVTQELSE-----NIVLTTVDDLYNWAKLSSLWPLLYGTA 54

Query: 64  CCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYV 123
           CC +E       R+D +RFG  PR+SPRQ+D++I AGT+T K    L R+Y+QMPEP+YV
Sbjct: 55  CCFIEFAALIGSRFDFDRFGLVPRSSPRQADLLITAGTITMKYTPTLVRLYEQMPEPKYV 114

Query: 124 ISMGSCANGGGYYH-YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
           I+MG+C   GG +   S + VRG D+++PVD+Y+PGCPP  EA+I  ++ L+KKI
Sbjct: 115 IAMGACTITGGMFSMDSPTAVRGVDKLIPVDVYIPGCPPRPEAIIDAVIKLRKKI 169


>gi|313183826|ref|YP_004021669.1| NADH-plastoquinone oxidoreductase subunit K [Prunus persica]
 gi|309321438|gb|ADO64979.1| NADH-plastoquinone oxidoreductase subunit K [Prunus persica]
          Length = 226

 Score =  217 bits (552), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 70/154 (45%), Positives = 101/154 (65%), Gaps = 1/154 (0%)

Query: 28  RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
            +    T    + T+   L  W+R  SL  + +G +CC +E       R+D +R+G  PR
Sbjct: 8   PLLDRTTQNSVISTTSSDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 67

Query: 88  ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146
           +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG 
Sbjct: 68  SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 127

Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           D+++PVD+Y+PGCPP  EA+I  I  L+KKI R 
Sbjct: 128 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 161


>gi|302833603|ref|XP_002948365.1| NADH:ubiquinone oxidoreductase subunit 10 [Volvox carteri f.
           nagariensis]
 gi|300266585|gb|EFJ50772.1| NADH:ubiquinone oxidoreductase subunit 10 [Volvox carteri f.
           nagariensis]
          Length = 164

 Score =  217 bits (552), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 109/159 (68%), Positives = 127/159 (79%)

Query: 26  FSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA 85
            S+  +      F+V+ VD ++ WAR GS+  MTFGLACCAVEMM A   RYDL+RFG  
Sbjct: 1   MSKAVAAAKGMEFVVSKVDNVINWARAGSIWPMTFGLACCAVEMMHAGASRYDLDRFGII 60

Query: 86  PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRG 145
            R SPRQSD MIVAGTLTNKMA ALR+VYDQMPEP++V+SMGSCANGGGYYHYSY+VVRG
Sbjct: 61  FRPSPRQSDCMIVAGTLTNKMAPALRKVYDQMPEPKWVVSMGSCANGGGYYHYSYAVVRG 120

Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           CDR+VPVD+YVPGCPPTAE L+YG+L LQKKI R    +
Sbjct: 121 CDRVVPVDVYVPGCPPTAEGLLYGLLQLQKKIYRSKTAQ 159


>gi|284106847|ref|ZP_06386290.1| NADH-quinone oxidoreductase, B subunit [Candidatus Poribacteria sp.
           WGA-A3]
 gi|283830026|gb|EFC34302.1| NADH-quinone oxidoreductase, B subunit [Candidatus Poribacteria sp.
           WGA-A3]
          Length = 159

 Score =  217 bits (552), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 87/148 (58%), Positives = 111/148 (75%), Gaps = 2/148 (1%)

Query: 35  HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APRASPRQS 93
               + T++D LV+W R  +L  MTFGLACCA+EM+ +   RYD++RFG    RASPRQS
Sbjct: 9   DSNIITTNLDYLVSWCRKSALWPMTFGLACCAIEMIASVSSRYDIDRFGAGVFRASPRQS 68

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD 153
           DVMIVAGT+  KMA  +RR+YDQM EPRYVISMGSCA  G +Y+ SYSVV+G D+IVPVD
Sbjct: 69  DVMIVAGTVCRKMAPVIRRIYDQMAEPRYVISMGSCATSGNHYN-SYSVVQGVDQIVPVD 127

Query: 154 IYVPGCPPTAEALIYGILLLQKKIRRVG 181
           +YV GCPP  EAL+  ++ LQ+KI++  
Sbjct: 128 VYVAGCPPRPEALLDALIKLQEKIQKEK 155


>gi|159161164|ref|YP_001542451.1| NADH-plastoquinone oxidoreductase subunit K [Ceratophyllum
           demersum]
 gi|148508447|gb|ABQ81454.1| NADH-plastoquinone oxidoreductase subunit K [Ceratophyllum
           demersum]
 gi|227481123|emb|CAP62502.1| photosystem II G protein [Ceratophyllum demersum]
          Length = 249

 Score =  217 bits (552), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 68/149 (45%), Positives = 101/149 (67%), Gaps = 1/149 (0%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
            T    + T+ + L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPRQ
Sbjct: 33  TTKNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQ 92

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGCDRIVP 151
           +D+++ AGT+T KMA +L R+Y+QMP+P+YVI+MG+C   GG +   SYS VRG D+++P
Sbjct: 93  ADLILTAGTITMKMAPSLVRLYEQMPKPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIP 152

Query: 152 VDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           VD+Y+PGCPP  EA+I  I  L+KK+ R 
Sbjct: 153 VDVYLPGCPPKPEAVIDAITKLRKKVSRE 181


>gi|218527901|sp|A8SEA7|NDHK_CERDE RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
          Length = 228

 Score =  217 bits (552), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 68/149 (45%), Positives = 101/149 (67%), Gaps = 1/149 (0%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
            T    + T+ + L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPRQ
Sbjct: 12  TTKNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQ 71

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGCDRIVP 151
           +D+++ AGT+T KMA +L R+Y+QMP+P+YVI+MG+C   GG +   SYS VRG D+++P
Sbjct: 72  ADLILTAGTITMKMAPSLVRLYEQMPKPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIP 131

Query: 152 VDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           VD+Y+PGCPP  EA+I  I  L+KK+ R 
Sbjct: 132 VDVYLPGCPPKPEAVIDAITKLRKKVSRE 160


>gi|15027638|ref|NP_149372.1| NADH dehydrogenase subunit 10 [Tetrahymena thermophila]
 gi|15011474|gb|AAK77569.1|AF396436_9 NADH dehydrogenase subunit 10 [Tetrahymena thermophila]
          Length = 162

 Score =  217 bits (552), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 97/145 (66%), Positives = 124/145 (85%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           ++VT ++ +V+WAR GS   +TFGLACCAVEMM A++ RYD +RFG   RA+PRQ+D+++
Sbjct: 5   YIVTPINAVVSWARQGSFWPLTFGLACCAVEMMHATVSRYDFDRFGVIFRATPRQADLIL 64

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGTLTNKMA  LRR+Y+Q  +P++V+SMGSCANGGGYYHYSYSVVRGC+RI+PVDIYVP
Sbjct: 65  VAGTLTNKMAPGLRRLYEQTLDPKWVLSMGSCANGGGYYHYSYSVVRGCNRIIPVDIYVP 124

Query: 158 GCPPTAEALIYGILLLQKKIRRVGN 182
           GCPPTAEAL++G+L LQK + R  N
Sbjct: 125 GCPPTAEALMFGVLQLQKSLYRQIN 149


>gi|254432198|ref|ZP_05045901.1| NADH dehydrogenase i chain b or ndhk [Cyanobium sp. PCC 7001]
 gi|197626651|gb|EDY39210.1| NADH dehydrogenase i chain b or ndhk [Cyanobium sp. PCC 7001]
          Length = 279

 Score =  217 bits (552), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 70/145 (48%), Positives = 102/145 (70%), Gaps = 1/145 (0%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
             +  ++T++D L  WAR  SL  + +G ACC +E       R+D +RFG  PR+SPRQ+
Sbjct: 42  LSENVILTTLDDLHNWARLSSLWPLLYGTACCFIEFAALIGSRFDFDRFGLVPRSSPRQA 101

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGCDRIVPV 152
           D++IVAGT+T KMA AL R+Y+QMPEP+YVI+MG+C   GG +   S + VRG D+++PV
Sbjct: 102 DLLIVAGTVTMKMAPALVRLYEQMPEPKYVIAMGACTITGGMFSADSTTAVRGVDKLIPV 161

Query: 153 DIYVPGCPPTAEALIYGILLLQKKI 177
           D+Y+PGCPP  EA+   ++ L+KK+
Sbjct: 162 DLYLPGCPPRPEAIFDAVIKLRKKV 186


>gi|260912210|ref|ZP_05918762.1| NADH dehydrogenase I [Prevotella sp. oral taxon 472 str. F0295]
 gi|260633644|gb|EEX51782.1| NADH dehydrogenase I [Prevotella sp. oral taxon 472 str. F0295]
          Length = 207

 Score =  217 bits (552), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 75/161 (46%), Positives = 111/161 (68%), Gaps = 3/161 (1%)

Query: 21  KVDADFSRISSEITHKGF--LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78
           K +    +I +E+   G   +V S+DQ + W R+ SL  +TF  +CC +E M     RYD
Sbjct: 17  KDNDTLEQIMNELHEGGVNVVVGSLDQAINWGRSNSLWSLTFATSCCGIEFMSVGCARYD 76

Query: 79  LERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137
             RFGF   R SPRQ+D+++ AGT+TNKMA  ++R+YD+M +P+YVI++G CA  GG + 
Sbjct: 77  FARFGFEVTRNSPRQADLIMCAGTITNKMAPVMKRLYDEMADPKYVIAVGGCAISGGPFK 136

Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
            SY VVRG + IVPVD+++PGCPP  EA++YG++ LQ+K++
Sbjct: 137 SSYHVVRGIEEIVPVDVFIPGCPPRPEAILYGMMQLQRKVK 177


>gi|33864158|ref|NP_895718.1| NADH dehydrogenase subunit B [Prochlorococcus marinus str. MIT
           9313]
 gi|81576854|sp|Q7V4Q5|NDHK_PROMM RecName: Full=NAD(P)H-quinone oxidoreductase subunit K; AltName:
           Full=NAD(P)H dehydrogenase I subunit K; AltName:
           Full=NDH-1 subunit K; Short=NDH-K
 gi|33635742|emb|CAE22067.1| putative respiratory-chain NADH dehydrogenase subunit
           [Prochlorococcus marinus str. MIT 9313]
          Length = 250

 Score =  217 bits (552), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 71/145 (48%), Positives = 102/145 (70%), Gaps = 1/145 (0%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
             +  ++TS+D L  WAR  SL  + +G ACC +E       R+D +RFG  PR+SPRQ+
Sbjct: 30  LSENIILTSLDDLHNWARLSSLWPLLYGTACCFIEFAALIGSRFDFDRFGLVPRSSPRQA 89

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGCDRIVPV 152
           D++IVAGT+T KMA AL R+Y+QMPEP+YVI+MG+C   GG +   S + VRG D+++PV
Sbjct: 90  DLLIVAGTVTMKMAPALVRLYEQMPEPKYVIAMGACTITGGMFSADSTTAVRGVDKLIPV 149

Query: 153 DIYVPGCPPTAEALIYGILLLQKKI 177
           D+Y+PGCPP  EA+   ++ L+KK+
Sbjct: 150 DLYLPGCPPRPEAIFDAVIKLRKKV 174


>gi|309322102|ref|YP_003933918.1| NADH-plastoquinone oxidoreductase subunit K [Erodium texanum]
 gi|197131352|gb|ACH47194.1| NADH-plastoquinone oxidoreductase subunit K [Erodium texanum]
 gi|300069195|gb|ADJ66317.1| NADH-plastoquinone oxidoreductase subunit K [Erodium texanum]
          Length = 227

 Score =  217 bits (552), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 72/150 (48%), Positives = 101/150 (67%), Gaps = 1/150 (0%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
           T    L T+   L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPRQ+
Sbjct: 13  TQNSVLSTTSKDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 72

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGCDRIVPV 152
           D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++PV
Sbjct: 73  DLVLTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 132

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
           D+Y+PGCPP  EA+I  I  L+KKI R  N
Sbjct: 133 DVYLPGCPPKPEAVIDAITKLRKKISREIN 162


>gi|133712065|gb|ABO36708.1| photosystem II G protein [Populus trichocarpa]
          Length = 237

 Score =  217 bits (552), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 69/154 (44%), Positives = 101/154 (65%), Gaps = 1/154 (0%)

Query: 28  RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
            +    T    + T+ + L  W+R  SL  + +G +CC +E       R+D +R+G  PR
Sbjct: 19  PLLDRTTPISVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 78

Query: 88  ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146
           +SPRQ+D+++ AGT+T KMA +L R+Y+QMPE +YVI+MG+C   GG +   SYS VRG 
Sbjct: 79  SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEQKYVIAMGACTITGGMFSTDSYSTVRGV 138

Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           D+++PVD+Y+PGCPP  EA+I  I  L+KKI R 
Sbjct: 139 DKLIPVDVYLPGCPPKPEAIIDAITKLRKKISRE 172


>gi|296936675|gb|ADH94347.1| NADH-plastoquinone oxidoreductase subunit K [Syzygium cumini]
          Length = 284

 Score =  217 bits (552), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 70/154 (45%), Positives = 103/154 (66%), Gaps = 1/154 (0%)

Query: 28  RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
            + +  T    + T+ + L  W+R  SL  + +G +CC +E       R+D +R+G  PR
Sbjct: 66  PLLARTTQNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 125

Query: 88  ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146
           +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG 
Sbjct: 126 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 185

Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           D+++PVD+Y+PGCPP  EA+I  I  L+KKI R 
Sbjct: 186 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKIARE 219


>gi|296133536|ref|YP_003640783.1| NADH-quinone oxidoreductase, B subunit [Thermincola sp. JR]
 gi|296032114|gb|ADG82882.1| NADH-quinone oxidoreductase, B subunit [Thermincola potens JR]
          Length = 170

 Score =  217 bits (552), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 79/154 (51%), Positives = 107/154 (69%), Gaps = 1/154 (0%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89
            E+     ++++V+    W R+ SL  +TFGLACCA+EMM A+  RYDL RFG    R S
Sbjct: 10  DELVRNNVVLSTVEAAFNWCRSRSLWPLTFGLACCAIEMMAAADTRYDLARFGSEVFRPS 69

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQ D+MI+AGT+T KM   + R+Y+QM EP+YV++MGSCA  GG +  SY+VV G D  
Sbjct: 70  PRQCDLMIIAGTITKKMQPVVLRLYEQMAEPKYVLAMGSCAISGGPFVDSYNVVLGGDTF 129

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           +PVD+YVPGCPP  EALIYGI+ L++K+     +
Sbjct: 130 LPVDVYVPGCPPRPEALIYGIMQLREKVANPKKI 163


>gi|220904929|ref|YP_002480241.1| NADH-quinone oxidoreductase subunit B [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
 gi|238065121|sp|B8J1D6|NUOB_DESDA RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|219869228|gb|ACL49563.1| NADH-quinone oxidoreductase, B subunit [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
          Length = 183

 Score =  217 bits (552), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 83/145 (57%), Positives = 106/145 (73%), Gaps = 1/145 (0%)

Query: 37  GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVM 96
           G ++  ++ LV W R GS+  +TFGLACCA+EMM      +DL+RFG   RASPRQ+D M
Sbjct: 33  GAVIGPLNALVNWGRAGSIWPVTFGLACCAIEMMATGAAHHDLDRFGIIFRASPRQADCM 92

Query: 97  IVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV 156
           +VAGTL+ KMA  LRRVYDQMPEPRYV++MGSCA  GG +  SY+V +G D++VPVD+YV
Sbjct: 93  VVAGTLSKKMAPVLRRVYDQMPEPRYVLAMGSCACSGGLF-QSYAVTQGVDQVVPVDVYV 151

Query: 157 PGCPPTAEALIYGILLLQKKIRRVG 181
           PGCPP  EAL  G + LQ+ I +  
Sbjct: 152 PGCPPRPEALFDGFIRLQEIINKEQ 176


>gi|209525746|ref|ZP_03274282.1| NADH-quinone oxidoreductase, B subunit [Arthrospira maxima CS-328]
 gi|209493719|gb|EDZ94038.1| NADH-quinone oxidoreductase, B subunit [Arthrospira maxima CS-328]
          Length = 241

 Score =  217 bits (552), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 72/168 (42%), Positives = 108/168 (64%), Gaps = 2/168 (1%)

Query: 11  ISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMM 70
               S  +      +  +++ E++    ++T+VD L  WAR  SL  + +G ACC +E  
Sbjct: 3   TQSPSPNTTIINPIERPQVTEELSE-NVILTTVDDLYNWARLSSLWPLLYGTACCFIEFA 61

Query: 71  QASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCA 130
                R+D +RFG  PR+SPRQ+D++I AGT+T K +  L R+Y+QMPEP+YVI+MG+C 
Sbjct: 62  GLIGSRFDFDRFGLVPRSSPRQADLLITAGTITMKYSPMLVRLYEQMPEPKYVIAMGACT 121

Query: 131 NGGGYYH-YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
             GG +   S + VRG D+++PVD+Y+PGCPP  EA+I  I+ L+KKI
Sbjct: 122 VTGGMFSMDSPTAVRGVDKLIPVDVYIPGCPPRPEAIIDAIIKLRKKI 169


>gi|114329866|ref|YP_740769.1| NADH dehydrogenase subunit 10 [Tetrahymena paravorax]
 gi|114150099|gb|ABI51678.1| NADH dehydrogenase subunit 10 [Tetrahymena paravorax]
          Length = 162

 Score =  217 bits (552), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 98/145 (67%), Positives = 124/145 (85%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           ++VT V+ +V+WAR GS   +TFGLACCAVEMM A++ RYD +RFG   RA+PRQ+D+++
Sbjct: 5   YIVTPVNAVVSWARQGSFWPLTFGLACCAVEMMHATVSRYDFDRFGVIFRATPRQADLIL 64

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGTLTNKMA  LRR+Y+Q  +P++V+SMGSCANGGGYYHYSYSVVRGC+RI+PVDIYVP
Sbjct: 65  VAGTLTNKMAPGLRRLYEQTLDPKWVLSMGSCANGGGYYHYSYSVVRGCNRIIPVDIYVP 124

Query: 158 GCPPTAEALIYGILLLQKKIRRVGN 182
           GCPPTAEAL++G+L LQK + R  N
Sbjct: 125 GCPPTAEALMFGVLQLQKSLYRQIN 149


>gi|110227083|ref|YP_665562.1| NADH dehydrogenase subunit K [Populus alba]
 gi|122243414|sp|Q14FF3|NDHK_POPAL RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
 gi|109945521|dbj|BAE97209.1| NADH dehydrogenase subunit K [Populus alba]
          Length = 225

 Score =  216 bits (551), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 69/154 (44%), Positives = 101/154 (65%), Gaps = 1/154 (0%)

Query: 28  RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
            +    T    + T+ + L  W+R  SL  + +G +CC +E       R+D +R+G  PR
Sbjct: 7   PLLDRTTPISVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66

Query: 88  ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146
           +SPRQ+D+++ AGT+T KMA +L R+Y+QMPE +YVI+MG+C   GG +   SYS VRG 
Sbjct: 67  SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEQKYVIAMGACTITGGMFSTDSYSTVRGV 126

Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           D+++PVD+Y+PGCPP  EA+I  I  L+KKI R 
Sbjct: 127 DKLIPVDVYLPGCPPKPEAIIDAITKLRKKISRE 160


>gi|156598283|gb|ABU85403.1| NADH-plastoquinone oxidoreductase subunit K [Ginkgo biloba]
          Length = 288

 Score =  216 bits (551), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 71/155 (45%), Positives = 104/155 (67%), Gaps = 1/155 (0%)

Query: 27  SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP 86
           S + +  T    + T+ + +  WAR  SL  + +G +CC++E       R+D +R+G  P
Sbjct: 64  SPLPNRTTPNSVISTTPNDMSNWARLTSLWPLLYGTSCCSIEFASLIGSRFDFDRYGLVP 123

Query: 87  RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRG 145
           R+SPRQ+D++I AGT+T KMA +L R+Y+QMPEPRYVI+MG+C   GG +   SYS VRG
Sbjct: 124 RSSPRQADLIITAGTVTMKMAPSLVRLYEQMPEPRYVIAMGACTITGGMFSTDSYSTVRG 183

Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
            D+++PVD+Y+PGCPP  E +I  I  L++KI R 
Sbjct: 184 VDKLIPVDVYLPGCPPKPEVIIDAITKLREKIARE 218


>gi|218527950|sp|Q0IDJ3|NDHK_SYNS3 RecName: Full=NAD(P)H-quinone oxidoreductase subunit K; AltName:
           Full=NAD(P)H dehydrogenase I subunit K; AltName:
           Full=NDH-1 subunit K; Short=NDH-K
          Length = 253

 Score =  216 bits (551), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 72/155 (46%), Positives = 105/155 (67%), Gaps = 1/155 (0%)

Query: 24  ADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFG 83
           A+ S   +    +  ++TS+D L  WAR  SL  + +G ACC +E       R+D +RFG
Sbjct: 28  AEGSPTVTNDLSENVILTSLDDLHNWARLSSLWPLLYGTACCFIEFAALLGSRFDFDRFG 87

Query: 84  FAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSV 142
             PR+SPRQ+D++IVAGT+T KM  AL R+Y+QMPEP+YVI+MG+C   GG +   S + 
Sbjct: 88  LVPRSSPRQADLLIVAGTVTMKMGPALVRLYEQMPEPKYVIAMGACTITGGMFSADSTTA 147

Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
           VRG D+++PVD+Y+PGCPP  EA+   ++ L+KK+
Sbjct: 148 VRGVDKLIPVDLYLPGCPPRPEAIFDAVIKLRKKV 182


>gi|288818716|ref|YP_003433064.1| NADH dehydrogenase chain B [Hydrogenobacter thermophilus TK-6]
 gi|288788116|dbj|BAI69863.1| NADH dehydrogenase chain B [Hydrogenobacter thermophilus TK-6]
 gi|308752303|gb|ADO45786.1| NADH-quinone oxidoreductase, B subunit [Hydrogenobacter
           thermophilus TK-6]
          Length = 179

 Score =  216 bits (551), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 79/152 (51%), Positives = 114/152 (75%), Gaps = 1/152 (0%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           +   GF++T+VD+L+ W R  +L  +T GLACCA+EMM  +  R+DL+R G   RASPRQ
Sbjct: 4   LNSNGFVITTVDELLRWGRRNALWPVTIGLACCAIEMMHTAASRFDLDRLGVIFRASPRQ 63

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           +DV+IVAGT+ NK+A  L+ +++QMP+P++ I+MG CA+ GG +  +Y+ ++G DRI+PV
Sbjct: 64  ADVLIVAGTVVNKVAPMLKLIWEQMPDPKWCITMGGCASAGGPFP-TYATLQGMDRIIPV 122

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           D+Y+PGCPP  + LIYGIL LQKKI+  G  K
Sbjct: 123 DVYIPGCPPHPQGLIYGILQLQKKIKEKGINK 154


>gi|114329820|ref|YP_740724.1| NADH dehydrogenase subunit 10 [Tetrahymena malaccensis]
 gi|114150053|gb|ABI51633.1| NADH dehydrogenase subunit 10 [Tetrahymena malaccensis]
          Length = 162

 Score =  216 bits (551), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 97/145 (66%), Positives = 124/145 (85%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           ++VT ++ +V+WAR GS   +TFGLACCAVEMM A++ RYD +RFG   RA+PRQ+D+++
Sbjct: 5   YIVTPINAVVSWARQGSFWPLTFGLACCAVEMMHATVSRYDFDRFGVIFRATPRQADLIL 64

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGTLTNKMA  LRR+Y+Q  +P++V+SMGSCANGGGYYHYSYSVVRGC+RI+PVDIYVP
Sbjct: 65  VAGTLTNKMAPGLRRLYEQTLDPKWVLSMGSCANGGGYYHYSYSVVRGCNRIIPVDIYVP 124

Query: 158 GCPPTAEALIYGILLLQKKIRRVGN 182
           GCPPTAEAL++G+L LQK + R  N
Sbjct: 125 GCPPTAEALMFGVLQLQKSLYRQIN 149


>gi|11466261|ref|NP_049576.1| NADH dehydrogenase subunit 10 [Tetrahymena pyriformis]
 gi|5306137|gb|AAD41921.1|AF160864_9 NADH dehydrogenase subunit 10 [Tetrahymena pyriformis]
          Length = 162

 Score =  216 bits (551), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 98/145 (67%), Positives = 124/145 (85%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           ++VT V+ +V+WAR GS   +TFGLACCAVEMM A++ RYD +RFG   RA+PRQ+D+++
Sbjct: 5   YIVTPVNAVVSWARQGSFWPLTFGLACCAVEMMHATVSRYDFDRFGVIFRATPRQADLIL 64

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGTLTNKMA  LRR+Y+Q  +P++V+SMGSCANGGGYYHYSYSVVRGC+RI+PVDIYVP
Sbjct: 65  VAGTLTNKMAPGLRRLYEQTLDPKWVLSMGSCANGGGYYHYSYSVVRGCNRIIPVDIYVP 124

Query: 158 GCPPTAEALIYGILLLQKKIRRVGN 182
           GCPPTAEAL++G+L LQK + R  N
Sbjct: 125 GCPPTAEALMFGVLQLQKSLYRQVN 149


>gi|258592365|emb|CBE68674.1| NADH-ubiquinone oxidoreductase 20 kDa subunit (NADH dehydrogenase
           subunit 10) [NC10 bacterium 'Dutch sediment']
          Length = 175

 Score =  216 bits (551), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 85/153 (55%), Positives = 109/153 (71%), Gaps = 2/153 (1%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APRASPRQ 92
                + T+V+ L  WAR  S   MTFGLACCA+EMM A   R+DL+R G    R SPRQ
Sbjct: 9   ADPNVITTTVEWLFNWARKSSPWPMTFGLACCAIEMMAAGASRFDLDRLGAGVFRPSPRQ 68

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGCDRIVP 151
           SDVMIVAGT+T KMA  ++ +Y+QMP+P++VI+MG+CA  GG + + +Y VV+G D +VP
Sbjct: 69  SDVMIVAGTVTEKMAPRIKTLYEQMPDPKWVIAMGACAISGGPFYYDAYHVVKGVDLLVP 128

Query: 152 VDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           VD+YVPGCPPT EALI+GIL LQ +I R    K
Sbjct: 129 VDVYVPGCPPTPEALIFGILTLQDQIMRGERAK 161


>gi|94970385|ref|YP_592433.1| NADH-quinone oxidoreductase, B subunit [Candidatus Koribacter
           versatilis Ellin345]
 gi|238065024|sp|Q1IL91|NUOB2_ACIBL RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName:
           Full=NADH dehydrogenase I subunit B 2; AltName:
           Full=NDH-1 subunit B 2
 gi|94552435|gb|ABF42359.1| NADH dehydrogenase subunit B [Candidatus Koribacter versatilis
           Ellin345]
          Length = 202

 Score =  216 bits (551), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 84/155 (54%), Positives = 113/155 (72%), Gaps = 2/155 (1%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89
                K FL++SVD +  WAR  S+  MTFGLACCA+EM+ AS  RYD+ RFG    R S
Sbjct: 5   ENKFEKNFLLSSVDYVFNWARKSSVWPMTFGLACCAIEMITASTARYDIARFGSEVFRPS 64

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQSD+MIVAGT+T KMA  ++R+Y+QMPEP++V++MG+CA+ GG ++ +Y+ ++G D+I
Sbjct: 65  PRQSDLMIVAGTVTLKMAPVVQRIYEQMPEPKWVMAMGACASVGGPFN-TYATLQGVDKI 123

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           VPVD+YV GCPP  E L YG+L LQ KI  +   K
Sbjct: 124 VPVDVYVVGCPPRPENLFYGLLKLQDKIDHMTLAK 158


>gi|156598545|gb|ABU85530.1| NADH-plastoquinone oxidoreductase subunit K [Passiflora biflora]
          Length = 237

 Score =  216 bits (551), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 71/153 (46%), Positives = 101/153 (66%), Gaps = 1/153 (0%)

Query: 29  ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88
           +    T    + T+ + L  WAR  SL  + +G +CC +E       R+D +R+G  PR+
Sbjct: 15  VLDRTTPISVISTTPNDLSNWARLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRS 74

Query: 89  SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGCD 147
           SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D
Sbjct: 75  SPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVD 134

Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           +++PVD Y+PGCPP  EA+I  I  L+KKI R 
Sbjct: 135 KLIPVDAYLPGCPPKPEAVIDAITKLRKKISRE 167


>gi|114329910|ref|YP_740813.1| NADH dehydrogenase subunit 10 [Tetrahymena pigmentosa]
 gi|114150143|gb|ABI51721.1| NADH dehydrogenase subunit 10 [Tetrahymena pigmentosa]
          Length = 162

 Score =  216 bits (550), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 98/145 (67%), Positives = 124/145 (85%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           ++VT V+ +V+WAR GS   +TFGLACCAVEMM A++ RYD +RFG   RA+PRQ+D+++
Sbjct: 5   YIVTPVNAVVSWARQGSFWPLTFGLACCAVEMMHATVSRYDFDRFGVIFRATPRQADLIL 64

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGTLTNKMA  LRR+Y+Q  +P++V+SMGSCANGGGYYHYSYSVVRGC+RI+PVDIYVP
Sbjct: 65  VAGTLTNKMAPGLRRLYEQTLDPKWVLSMGSCANGGGYYHYSYSVVRGCNRIIPVDIYVP 124

Query: 158 GCPPTAEALIYGILLLQKKIRRVGN 182
           GCPPTAEAL++G+L LQK + R  N
Sbjct: 125 GCPPTAEALMFGVLQLQKSLYRQIN 149


>gi|300782452|ref|YP_003762743.1| NADH dehydrogenase I subunit B [Amycolatopsis mediterranei U32]
 gi|299791966|gb|ADJ42341.1| NADH dehydrogenase I subunit B [Amycolatopsis mediterranei U32]
          Length = 182

 Score =  216 bits (550), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 81/149 (54%), Positives = 104/149 (69%), Gaps = 2/149 (1%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89
            E    G L+ S++ LV WAR  SL   TFGLACCA+EMM     RYD+ RFG     A+
Sbjct: 4   EEKLPNGILLASLEGLVNWARKNSLWPATFGLACCAIEMMTVGGSRYDIARFGMERFSAT 63

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQ+D+MIVAG +T KMA  LR++YDQM EPR+V++MG CA+ GG ++  Y+VV+G D I
Sbjct: 64  PRQADLMIVAGRVTQKMAPVLRQIYDQMAEPRWVLAMGVCASSGGMFNN-YAVVQGVDHI 122

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           VPVD+Y+PGCPP  E L+  IL L  KI+
Sbjct: 123 VPVDMYLPGCPPRPEMLLDAILKLHAKIQ 151


>gi|16330876|ref|NP_441604.1| NADH dehydrogenase subunit B [Synechocystis sp. PCC 6803]
 gi|131406|sp|P19050|NDHK1_SYNY3 RecName: Full=NAD(P)H-quinone oxidoreductase subunit K 1; AltName:
           Full=NAD(P)H dehydrogenase I subunit K 1; AltName:
           Full=NDH-1 subunit K 1; Short=NDH-K 1; Flags: Precursor
 gi|48047|emb|CAA35485.1| unnamed protein product [Synechocystis sp. PCC 6803]
 gi|1653370|dbj|BAA18284.1| NADH dehydrogenase subunit; NdhK [Synechocystis sp. PCC 6803]
          Length = 248

 Score =  216 bits (550), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 73/178 (41%), Positives = 114/178 (64%), Gaps = 3/178 (1%)

Query: 1   MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTF 60
           M     N   +   ++  +    A  S+++ +++    ++T+VD L  WA+  SL  + +
Sbjct: 1   MSPNPANPTDLERVATAKI-LNPASRSQVTQDLSE-NVILTTVDDLYNWAKLSSLWPLLY 58

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           G ACC +E       R+D +RFG  PR+SPRQ+D++I AGT+T KMA AL R+Y++MPEP
Sbjct: 59  GTACCFIEFAALIGSRFDFDRFGLVPRSSPRQADLIITAGTITMKMAPALVRLYEEMPEP 118

Query: 121 RYVISMGSCANGGGYY-HYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
           +YVI+MG+C   GG +   S + VRG D+++PVD+Y+PGCPP  EA+   I+ L+KK+
Sbjct: 119 KYVIAMGACTITGGMFSSDSTTAVRGVDKLIPVDVYIPGCPPRPEAIFDAIIKLRKKV 176


>gi|73670849|ref|YP_306864.1| F420H2 dehydrogenase subunit B [Methanosarcina barkeri str. Fusaro]
 gi|72398011|gb|AAZ72284.1| F420H2 dehydrogenase subunit B [Methanosarcina barkeri str. Fusaro]
          Length = 184

 Score =  216 bits (550), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 73/179 (40%), Positives = 111/179 (62%), Gaps = 3/179 (1%)

Query: 6   VNQKIISGQSSCSLEKVDADFSRISSEITHKGFLV-TSVDQLVTWARTGSLMWMTFGLAC 64
           V +K  S     S E++    +  S+ I+   FL  T V  ++ W R  SL +MT  + C
Sbjct: 4   VKEKKTSKPYETSEEEIPGVITTTSNAISE--FLKKTKVQDIINWGRKNSLWFMTQPMGC 61

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C VEM+      YD +RFG  PR SPRQ+DVM+++G +T K   AL+R+++QMP P++VI
Sbjct: 62  CGVEMIAMGCAHYDTDRFGIIPRNSPRQADVMLISGYVTKKYLPALKRLWEQMPSPKWVI 121

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           + G C+  GG ++ SYS V+  D I P+D++VPGCPP  EA++ G + LQ+KI+   ++
Sbjct: 122 AFGDCSISGGPFYESYSTVQNIDEIFPIDVFVPGCPPRPEAMLQGFVELQEKIKAKKDL 180


>gi|222054362|ref|YP_002536724.1| NADH dehydrogenase I, D subunit [Geobacter sp. FRC-32]
 gi|221563651|gb|ACM19623.1| NADH dehydrogenase I, D subunit [Geobacter sp. FRC-32]
          Length = 792

 Score =  216 bits (550), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 79/144 (54%), Positives = 106/144 (73%), Gaps = 2/144 (1%)

Query: 36  KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSD 94
              L+T++D L+ W R  SL  M FGL+CC VEMM +   RYD+ RFG    R +PR++D
Sbjct: 9   DNILLTNLDDLINWGRANSLWPMFFGLSCCFVEMMTSFTSRYDISRFGAEVLRGTPREAD 68

Query: 95  VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154
           +M++AGT+  KMA ++  +Y+QM EPR+VISMGSCAN GG Y   YSVV+G ++I+PVD+
Sbjct: 69  LMVIAGTVFKKMAPSILTLYEQMAEPRWVISMGSCANSGGMY-DVYSVVQGVNQILPVDV 127

Query: 155 YVPGCPPTAEALIYGILLLQKKIR 178
           YVPGCPP  EA + G+LLLQ+KIR
Sbjct: 128 YVPGCPPRPEAFMQGLLLLQEKIR 151


>gi|221633754|ref|YP_002522980.1| NADH dehydrogenase i subunit B [Thermomicrobium roseum DSM 5159]
 gi|238065220|sp|B9L170|NUOB_THERP RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|221156029|gb|ACM05156.1| nadh dehydrogenase i, b subunit [Thermomicrobium roseum DSM 5159]
          Length = 185

 Score =  216 bits (550), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 90/157 (57%), Positives = 121/157 (77%), Gaps = 2/157 (1%)

Query: 29  ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDL-ERFGFAPR 87
           +S+  +H   + T+ D L +WAR  SL W+ FGLACCA+EM+ ++MPR+DL ERFG   R
Sbjct: 3   MSAAQSHPNIITTTADWLFSWARRSSLWWLQFGLACCAIEMISSAMPRFDLAERFGMLYR 62

Query: 88  ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCD 147
           ASPRQ+D+MIVAGT+T KMA  +R++YDQM +P++VISMGSCAN GG +  +Y+VV+G D
Sbjct: 63  ASPRQADLMIVAGTVTKKMAPVVRQLYDQMADPKWVISMGSCANVGGPF-DTYAVVQGVD 121

Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           +++PVDIYVPGCPP  EAL YG+L LQ +I R   +K
Sbjct: 122 QVIPVDIYVPGCPPVPEALYYGVLELQNRIIRYERLK 158


>gi|189162275|ref|YP_001936521.1| NADH dehydrogenase subunit K [Fagopyrum esculentum subsp.
           ancestrale]
 gi|166065361|gb|ABY79736.1| NADH dehydrogenase subunit K [Fagopyrum esculentum subsp.
           ancestrale]
          Length = 285

 Score =  216 bits (550), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 70/146 (47%), Positives = 101/146 (69%), Gaps = 1/146 (0%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           IT    + T+ + L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPRQ
Sbjct: 72  ITPNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQ 131

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGCDRIVP 151
           +D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++P
Sbjct: 132 ADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIP 191

Query: 152 VDIYVPGCPPTAEALIYGILLLQKKI 177
           VD+Y+PGCPP  EA+I  I  L+KKI
Sbjct: 192 VDVYLPGCPPKPEAVIDAITKLRKKI 217


>gi|159485096|ref|XP_001700585.1| NADH:ubiquinone oxidoreductase subunit 10 [Chlamydomonas
           reinhardtii]
 gi|34328788|gb|AAQ63698.1| NADH:ubiquinone oxidoreductase subunit 10 [Chlamydomonas
           reinhardtii]
 gi|158272225|gb|EDO98029.1| NADH:ubiquinone oxidoreductase subunit 10 [Chlamydomonas
           reinhardtii]
          Length = 164

 Score =  216 bits (550), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 108/147 (73%), Positives = 124/147 (84%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           F+V+ VD +V WAR GS+  MTFGLACCAVEMM A   RYDL+R+G   R SPRQSD MI
Sbjct: 13  FVVSKVDNVVNWARAGSIWPMTFGLACCAVEMMHAGASRYDLDRYGIIFRPSPRQSDAMI 72

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGTLTNKMA ALR+VYDQMPEP++V+SMGSCANGGGYYHYSY+VVRGCDR+VPVD+YVP
Sbjct: 73  VAGTLTNKMAPALRKVYDQMPEPKWVVSMGSCANGGGYYHYSYAVVRGCDRVVPVDVYVP 132

Query: 158 GCPPTAEALIYGILLLQKKIRRVGNVK 184
           GCPPTAE L+YG+L LQKKI R    +
Sbjct: 133 GCPPTAEGLLYGLLQLQKKIYRSKTTQ 159


>gi|325003723|ref|ZP_08124835.1| NADH dehydrogenase subunit B [Pseudonocardia sp. P1]
          Length = 235

 Score =  216 bits (550), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 84/148 (56%), Positives = 108/148 (72%), Gaps = 2/148 (1%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89
            E    G L+T+V++LV W R  SL   TFGLACCA+EMM    PRYDL RFG    RAS
Sbjct: 4   EENLPSGVLLTNVEKLVNWTRKSSLWPATFGLACCAIEMMTTGAPRYDLARFGMEVFRAS 63

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQ+D+MIVAG ++NKMA  LR++YDQMPEPR+V++MG CA+ GG ++  Y++V+G D +
Sbjct: 64  PRQADLMIVAGRVSNKMAPVLRQIYDQMPEPRWVLAMGVCASSGGMFNN-YAIVQGVDHV 122

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKI 177
           VPVD+Y+PGCPP  E LI  IL +  KI
Sbjct: 123 VPVDMYLPGCPPRPEMLIDAILKIHAKI 150


>gi|154795218|ref|YP_001109505.2| NADH dehydrogenase subunit K [Populus trichocarpa]
 gi|224173986|ref|XP_002339836.1| predicted protein [Populus trichocarpa]
 gi|218527945|sp|A4GYR4|NDHK_POPTR RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
 gi|222832334|gb|EEE70811.1| predicted protein [Populus trichocarpa]
          Length = 225

 Score =  216 bits (550), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 69/154 (44%), Positives = 101/154 (65%), Gaps = 1/154 (0%)

Query: 28  RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
            +    T    + T+ + L  W+R  SL  + +G +CC +E       R+D +R+G  PR
Sbjct: 7   PLLDRTTPISVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66

Query: 88  ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146
           +SPRQ+D+++ AGT+T KMA +L R+Y+QMPE +YVI+MG+C   GG +   SYS VRG 
Sbjct: 67  SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEQKYVIAMGACTITGGMFSTDSYSTVRGV 126

Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           D+++PVD+Y+PGCPP  EA+I  I  L+KKI R 
Sbjct: 127 DKLIPVDVYLPGCPPKPEAIIDAITKLRKKISRE 160


>gi|197131354|gb|ACH47195.1| NADH-plastoquinone oxidoreductase subunit K [Geranium carolinianum]
          Length = 225

 Score =  215 bits (549), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 72/150 (48%), Positives = 102/150 (68%), Gaps = 1/150 (0%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
           T    L T+ + L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPRQ+
Sbjct: 13  TPNSVLSTTPNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 72

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGCDRIVPV 152
           D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++PV
Sbjct: 73  DLVLTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 132

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
           D+Y+PGCPP  EA+I  I  L+KKI R  N
Sbjct: 133 DVYLPGCPPKPEAVIDAITKLRKKISREIN 162


>gi|139389805|ref|YP_001123466.1| NADH dehydrogenase subunit K [Crucihimalaya wallichii]
 gi|218527886|sp|A4QKT5|NDHK_CRUWA RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
 gi|134286667|dbj|BAF50290.1| photosystem II G protein [Crucihimalaya wallichii]
          Length = 225

 Score =  215 bits (549), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 69/154 (44%), Positives = 102/154 (66%), Gaps = 1/154 (0%)

Query: 28  RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
            +    T    + T+++ L  W+   SL  + +G +CC +E       R+D +R+G  PR
Sbjct: 7   PVLDRTTKNSVISTTLNDLSNWSELSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66

Query: 88  ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146
           +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG 
Sbjct: 67  SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126

Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           D+++PVD+Y+PGCPP  EA+I  I  L+KKI R 
Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKIARE 160


>gi|113954408|ref|YP_729479.1| NADH dehydrogenase subunit B [Synechococcus sp. CC9311]
 gi|113881759|gb|ABI46717.1| NADH dehydrogenase I chain B or NdhK [Synechococcus sp. CC9311]
          Length = 259

 Score =  215 bits (549), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 72/155 (46%), Positives = 105/155 (67%), Gaps = 1/155 (0%)

Query: 24  ADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFG 83
           A+ S   +    +  ++TS+D L  WAR  SL  + +G ACC +E       R+D +RFG
Sbjct: 34  AEGSPTVTNDLSENVILTSLDDLHNWARLSSLWPLLYGTACCFIEFAALLGSRFDFDRFG 93

Query: 84  FAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSV 142
             PR+SPRQ+D++IVAGT+T KM  AL R+Y+QMPEP+YVI+MG+C   GG +   S + 
Sbjct: 94  LVPRSSPRQADLLIVAGTVTMKMGPALVRLYEQMPEPKYVIAMGACTITGGMFSADSTTA 153

Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
           VRG D+++PVD+Y+PGCPP  EA+   ++ L+KK+
Sbjct: 154 VRGVDKLIPVDLYLPGCPPRPEAIFDAVIKLRKKV 188


>gi|154148789|ref|YP_001405790.1| NADH dehydrogenase subunit B [Campylobacter hominis ATCC BAA-381]
 gi|218527983|sp|A7HZU9|NUOB_CAMHC RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|153804798|gb|ABS51805.1| NADH-quinone oxidoreductase, b subunit [Campylobacter hominis ATCC
           BAA-381]
          Length = 169

 Score =  215 bits (549), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 83/147 (56%), Positives = 111/147 (75%), Gaps = 1/147 (0%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
            ++T++D+LV W R+ SL  M +GLACCA+EMM     RYD +RFG   RAS +QS+VM+
Sbjct: 16  VVLTTIDKLVNWGRSNSLWAMNYGLACCAIEMMATGASRYDFDRFGTIFRASAKQSEVMV 75

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           +AGTL+ K A   RR+YD MPEP++VISMGSCAN GG ++ +Y+VV+GCDRI+PVDIY+P
Sbjct: 76  IAGTLSKKHAELARRLYDAMPEPKWVISMGSCANTGGMFN-TYAVVQGCDRIIPVDIYLP 134

Query: 158 GCPPTAEALIYGILLLQKKIRRVGNVK 184
           GC P  E L Y +++LQKKIRR    +
Sbjct: 135 GCAPRPETLQYALMILQKKIRREKANR 161


>gi|5650745|emb|CAB51630.1| putative NADH-ubiquinone oxidoreductase subunit [Sinorhizobium
           meliloti]
          Length = 167

 Score =  215 bits (549), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 82/153 (53%), Positives = 114/153 (74%), Gaps = 1/153 (0%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP 90
           ++      L T+ D +++W+R  +L   TFG+ACCA+EM+ A   RYDL+RFG   R SP
Sbjct: 5   NDAIRDSVLFTTADSIISWSRRSALWPETFGIACCAIEMISAGCARYDLDRFGVVFRPSP 64

Query: 91  RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150
           RQSDVMI+AGT+T K A  +RR+YDQMPEPR+VI+MG+CA  GG Y+ +Y+VV+G +  V
Sbjct: 65  RQSDVMIIAGTVTRKFAPVVRRLYDQMPEPRWVIAMGTCAISGGVYN-TYAVVQGSETFV 123

Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           PVD++VPGCPP  EAL++G LLLQ+KI++   +
Sbjct: 124 PVDVHVPGCPPRPEALMHGFLLLQEKIKKSRAL 156


>gi|218460106|ref|ZP_03500197.1| NADH-ubiquinone oxidoreductase protein, chain B [Rhizobium etli Kim
           5]
          Length = 167

 Score =  215 bits (549), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 83/153 (54%), Positives = 113/153 (73%), Gaps = 1/153 (0%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP 90
           +       L T+ D +++W+R  +L   TFG+ACCA+EM+ A   RYDL+RFG   R SP
Sbjct: 5   NNAIRDSVLFTTADSIISWSRRSALWPETFGIACCAIEMISAGCARYDLDRFGVVFRPSP 64

Query: 91  RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150
           RQSDVMI+AGT+T K A  +RR+YDQMPEPR+VI+MG+CA  GG Y+ +Y+VV+G +  V
Sbjct: 65  RQSDVMIIAGTVTRKFAPVVRRLYDQMPEPRWVIAMGTCAISGGVYN-TYAVVQGSETFV 123

Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           PVD++VPGCPP  EAL++G LLLQ+KI+R   +
Sbjct: 124 PVDVHVPGCPPRPEALMHGFLLLQEKIKRSRAL 156


>gi|16263286|ref|NP_436079.1| NuoB2 NADH I chain B [Sinorhizobium meliloti 1021]
 gi|307304395|ref|ZP_07584146.1| NADH-quinone oxidoreductase, B subunit [Sinorhizobium meliloti
           BL225C]
 gi|307318102|ref|ZP_07597538.1| NADH-quinone oxidoreductase, B subunit [Sinorhizobium meliloti
           AK83]
 gi|17380450|sp|P56897|NUOB2_RHIME RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName:
           Full=NADH dehydrogenase I subunit B 2; AltName:
           Full=NDH-1 subunit B 2
 gi|14523963|gb|AAK65491.1| NuoB2 NADH:quinone oxidoreductase (chain B) [Sinorhizobium meliloti
           1021]
 gi|306896143|gb|EFN26893.1| NADH-quinone oxidoreductase, B subunit [Sinorhizobium meliloti
           AK83]
 gi|306902597|gb|EFN33191.1| NADH-quinone oxidoreductase, B subunit [Sinorhizobium meliloti
           BL225C]
          Length = 167

 Score =  215 bits (549), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 82/153 (53%), Positives = 114/153 (74%), Gaps = 1/153 (0%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP 90
           ++      L T+ D +++W+R  +L   TFG+ACCA+EM+ A   RYDL+RFG   R SP
Sbjct: 5   NDAIRDSVLFTTADSIISWSRRSALWPETFGIACCAIEMISAGCARYDLDRFGVVFRPSP 64

Query: 91  RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150
           RQSDVMI+AGT+T K A  +RR+YDQMPEPR+VI+MG+CA  GG Y+ +Y+VV+G +  V
Sbjct: 65  RQSDVMIIAGTVTRKFAPVVRRLYDQMPEPRWVIAMGTCAISGGVYN-TYAVVQGSETFV 123

Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           PVD++VPGCPP  EAL++G LLLQ+KI++   +
Sbjct: 124 PVDVHVPGCPPRPEALMHGFLLLQEKIKKSRAL 156


>gi|20090355|ref|NP_616430.1| F(420)H(2) dehydrogenase, subunit FpoB [Methanosarcina acetivorans
           C2A]
 gi|19915360|gb|AAM04910.1| F(420)H(2) dehydrogenase, subunit FpoB [Methanosarcina acetivorans
           C2A]
          Length = 184

 Score =  215 bits (549), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 70/174 (40%), Positives = 107/174 (61%), Gaps = 3/174 (1%)

Query: 6   VNQKIISGQSSCSLEKVDADFSRISSEITHKGFLV-TSVDQLVTWARTGSLMWMTFGLAC 64
           V +   +  +    E++    +  ++ I+   FL  T    L+ W R  SL +MT  + C
Sbjct: 4   VKETKTNNTTGTPEEEIPGVITTTTNAISD--FLKKTKAQDLINWGRKNSLWFMTQPMGC 61

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C VEM+      YD +RFG  PR SPR +DVMI++G +T K   AL+R+++QMP P++VI
Sbjct: 62  CGVEMIATGCAHYDTDRFGIIPRNSPRHADVMIISGYVTKKYLPALKRLWEQMPAPKWVI 121

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           +MG C+  GG ++ SYS V+  D + P+D+++PGCPP  EALI G + LQ+KI+
Sbjct: 122 AMGDCSISGGPFYESYSTVQNIDELFPIDVFIPGCPPRPEALIQGFVELQEKIK 175


>gi|289548152|ref|YP_003473140.1| NADH-quinone oxidoreductase subunit beta [Thermocrinis albus DSM
           14484]
 gi|289181769|gb|ADC89013.1| NADH-quinone oxidoreductase, B subunit [Thermocrinis albus DSM
           14484]
          Length = 178

 Score =  215 bits (549), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 78/152 (51%), Positives = 117/152 (76%), Gaps = 1/152 (0%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           +   GF++T+V++L++W+R  +L  +T GLACCA+EMM A+  R+DL+R G   RASPRQ
Sbjct: 4   LNSNGFVLTTVEELLSWSRRNALWPVTIGLACCAIEMMHAAASRFDLDRLGVIFRASPRQ 63

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           +D++IVAGT+ NK+A  L+ +++QMP+P++ I+MG CA+ GG +  +YS ++G DRI+PV
Sbjct: 64  ADLLIVAGTVVNKVAPMLKLIWEQMPDPKWCITMGGCASAGGPFP-TYSTLQGMDRIIPV 122

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           D+Y+PGCPP  + L+YGIL LQKKI+  G  K
Sbjct: 123 DVYIPGCPPHPQGLLYGILQLQKKIKEQGVRK 154


>gi|87123074|ref|ZP_01078925.1| putative respiratory-chain NADH dehydrogenase subunit
           [Synechococcus sp. RS9917]
 gi|86168794|gb|EAQ70050.1| putative respiratory-chain NADH dehydrogenase subunit
           [Synechococcus sp. RS9917]
          Length = 246

 Score =  215 bits (549), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 76/166 (45%), Positives = 109/166 (65%), Gaps = 6/166 (3%)

Query: 13  GQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQA 72
           G  + + E   A  S +S        ++TS+D L  WAR  SL  + +G ACC +E    
Sbjct: 10  GPVAGAAEGAPAVTSDLSE-----NVILTSLDDLHNWARLSSLWPLLYGTACCFIEFAAL 64

Query: 73  SMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANG 132
              R+D +RFG  PR+SPRQ+D++IVAGT+T KMA AL R+Y+QMPEP+YVI+MG+C   
Sbjct: 65  IGSRFDFDRFGLVPRSSPRQADLLIVAGTVTMKMAPALVRLYEQMPEPKYVIAMGACTIT 124

Query: 133 GGYYH-YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
           GG +   S + VRG D+++PVD+Y+PGCPP  EA+   ++ L+KK+
Sbjct: 125 GGMFSADSTTAVRGVDKLIPVDLYLPGCPPRPEAIFDAVIKLRKKV 170


>gi|309322179|ref|YP_003934094.1| NADH-plastoquinone oxidoreductase subunit K [Geranium palmatum]
 gi|197131358|gb|ACH47197.1| NADH-plastoquinone oxidoreductase subunit K [Geranium palmatum]
 gi|300069272|gb|ADJ66393.1| NADH-plastoquinone oxidoreductase subunit K [Geranium palmatum]
          Length = 225

 Score =  215 bits (548), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 72/150 (48%), Positives = 102/150 (68%), Gaps = 1/150 (0%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
           T    L T+ + L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPRQ+
Sbjct: 13  TQNSVLSTTPNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 72

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGCDRIVPV 152
           D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++PV
Sbjct: 73  DLVLTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 132

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
           D+Y+PGCPP  EA+I  I  L+KKI R  N
Sbjct: 133 DVYLPGCPPKPEAVIDAITKLRKKISREIN 162


>gi|312886635|ref|ZP_07746242.1| NADH dehydrogenase subunit B [Mucilaginibacter paludis DSM 18603]
 gi|311300737|gb|EFQ77799.1| NADH dehydrogenase subunit B [Mucilaginibacter paludis DSM 18603]
          Length = 166

 Score =  215 bits (548), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 87/143 (60%), Positives = 109/143 (76%), Gaps = 1/143 (0%)

Query: 37  GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVM 96
           G +VT +D L+ W+R  SL  ++FG+ACCA+EMM +    YDL+RFG  PR S RQ+DV+
Sbjct: 11  GIIVTKLDDLMNWSRLSSLWPLSFGIACCAIEMMGSMASTYDLDRFGVFPRPSARQADVI 70

Query: 97  IVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPVDIY 155
           I+AGT+T KMA  ++R+Y+QMPEP+YVISMGSC+N GG Y    Y VV+G DRI+PVDIY
Sbjct: 71  IIAGTVTFKMAERIKRLYEQMPEPKYVISMGSCSNCGGPYWQHGYHVVKGVDRIIPVDIY 130

Query: 156 VPGCPPTAEALIYGILLLQKKIR 178
           V GCPP  EALI GIL LQKKI 
Sbjct: 131 VQGCPPRPEALIGGILELQKKIE 153


>gi|91065096|gb|ABE03928.1| NuoB [Theonella swinhoei bacterial symbiont clone pSW1H8]
          Length = 178

 Score =  215 bits (548), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 85/154 (55%), Positives = 115/154 (74%), Gaps = 2/154 (1%)

Query: 26  FSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA 85
           F R   E+   G L +++ +LV W R+ SL   TFGLACCA+EMMQ++  R DL RFG  
Sbjct: 7   FERDVQELETDGILFSTLGKLVAWGRSNSLWPATFGLACCAIEMMQSTNSRNDLARFGSE 66

Query: 86  -PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR 144
             RASPRQ+DVMIVAG L+ KMA  +RRVY+QMP+P++VISMG+CA+ GG ++  Y++V+
Sbjct: 67  VFRASPRQADVMIVAGRLSKKMAPVMRRVYEQMPDPKWVISMGACASSGGMFNN-YAIVQ 125

Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
             D +VPVDI+VPGCPP  EAL+Y ++ LQK++R
Sbjct: 126 NVDSVVPVDIFVPGCPPRPEALVYAVMQLQKRVR 159


>gi|116622878|ref|YP_825034.1| NADH-quinone oxidoreductase subunit B [Candidatus Solibacter
           usitatus Ellin6076]
 gi|122253898|sp|Q020B6|NUOB1_SOLUE RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName:
           Full=NADH dehydrogenase I subunit B 1; AltName:
           Full=NDH-1 subunit B 1
 gi|116226040|gb|ABJ84749.1| NADH-quinone oxidoreductase, B subunit [Candidatus Solibacter
           usitatus Ellin6076]
          Length = 188

 Score =  215 bits (548), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 78/150 (52%), Positives = 111/150 (74%), Gaps = 2/150 (1%)

Query: 35  HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQS 93
            + F+ T+VD +  WAR  +L  +TFGLACCA+EM+ +S  R+D+ RFG    R SPRQS
Sbjct: 10  EQNFITTNVDHVFNWARKSALWPLTFGLACCAIEMIASSTSRFDIARFGAEVFRPSPRQS 69

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD 153
           D+MIVAGT+T KMA  L+R++DQMP+P++ ISMG+C++ GG ++ +Y+V++G D+IVPVD
Sbjct: 70  DLMIVAGTVTLKMAPVLKRIWDQMPDPKWCISMGACSSVGGPFN-TYAVLQGVDKIVPVD 128

Query: 154 IYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           +YV GCPP  E L Y +L LQ KI  +  +
Sbjct: 129 VYVTGCPPRPENLFYALLKLQDKIDTMTTL 158


>gi|254421629|ref|ZP_05035347.1| NADH-quinone oxidoreductase, B subunit subfamily, putative
           [Synechococcus sp. PCC 7335]
 gi|196189118|gb|EDX84082.1| NADH-quinone oxidoreductase, B subunit subfamily, putative
           [Synechococcus sp. PCC 7335]
          Length = 242

 Score =  215 bits (548), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 71/148 (47%), Positives = 103/148 (69%), Gaps = 1/148 (0%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP 90
           ++   +  ++T+VD L  W R  SL  + +G ACC +E       R+D +RFG APRASP
Sbjct: 22  TQDLSENVILTTVDDLYNWTRLSSLFPLLYGTACCFIEFAALLGSRFDFDRFGLAPRASP 81

Query: 91  RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGCDRI 149
           RQ+D++IVAGT+T KMA AL R+Y+QMP+P YV++MG+C   GG +   S + +RG D+I
Sbjct: 82  RQADLIIVAGTVTMKMAPALVRLYEQMPKPAYVMAMGACTITGGMFSADSPTALRGVDKI 141

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKI 177
           +PVD+Y+PGCPP  EA+   ++ L+KKI
Sbjct: 142 IPVDVYIPGCPPRPEAIFDAVIKLRKKI 169


>gi|251773166|gb|EES53719.1| NADH dehydrogenase (ubiquinone), B subunit [Leptospirillum
           ferrodiazotrophum]
          Length = 165

 Score =  215 bits (548), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 89/146 (60%), Positives = 112/146 (76%), Gaps = 2/146 (1%)

Query: 39  LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APRASPRQSDVMI 97
           L  +V+ +V W+R  +L  MTFGLACCA+EMM A   R+D++RFG    RASPRQSD+MI
Sbjct: 18  LQDAVNDIVNWSRKSALWPMTFGLACCAIEMMGAVASRFDIDRFGAGVFRASPRQSDLMI 77

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGTLT KMA  +R++YDQMPEPRYVI+MGSCA  G  Y  SYSVV+G DR++PVD+YVP
Sbjct: 78  VAGTLTRKMAPVVRKIYDQMPEPRYVIAMGSCATSGNIY-DSYSVVQGVDRLIPVDVYVP 136

Query: 158 GCPPTAEALIYGILLLQKKIRRVGNV 183
           GCPP  EAL+ G++ LQ+KI +   V
Sbjct: 137 GCPPRPEALLDGLIKLQEKIMQDKPV 162


>gi|313183997|ref|YP_004021154.1| NADH-plastoquinone oxidoreductase subunit K [Castanea mollissima]
 gi|309321524|gb|ADO65064.1| NADH-plastoquinone oxidoreductase subunit K [Castanea mollissima]
          Length = 255

 Score =  215 bits (548), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 67/148 (45%), Positives = 100/148 (67%), Gaps = 1/148 (0%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
                + T+ + L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPRQ+
Sbjct: 40  QKNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 99

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGCDRIVPV 152
           D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SY+ VRG D+++PV
Sbjct: 100 DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYTTVRGVDKLIPV 159

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRV 180
           D+Y+PGCPP  EA+I  I  L+KK+ R 
Sbjct: 160 DVYLPGCPPKPEAVIDAITKLRKKLSRE 187


>gi|309322236|ref|YP_003934314.1| NADH-plastoquinone oxidoreductase subunit K [Monsonia speciosa]
 gi|197131360|gb|ACH47198.1| NADH-plastoquinone oxidoreductase subunit K [Monsonia speciosa]
 gi|300069329|gb|ADJ66449.1| NADH-plastoquinone oxidoreductase subunit K [Monsonia speciosa]
          Length = 225

 Score =  215 bits (548), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 71/148 (47%), Positives = 100/148 (67%), Gaps = 1/148 (0%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
           T    L T+   L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPRQ+
Sbjct: 13  TQNSVLSTTSTDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 72

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGCDRIVPV 152
           D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++PV
Sbjct: 73  DLVLTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 132

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRV 180
           D+Y+PGCPP  EA+I  I  L+KKI R 
Sbjct: 133 DVYLPGCPPKPEAVIDAITKLRKKIARE 160


>gi|290489744|gb|ADD31256.1| NADH-plastoquinone oxidoreductase subunit K protein [Quercus nigra]
          Length = 230

 Score =  215 bits (548), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 67/148 (45%), Positives = 100/148 (67%), Gaps = 1/148 (0%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
                + T+ + L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPRQ+
Sbjct: 15  QKNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 74

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGCDRIVPV 152
           D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SY+ VRG D+++PV
Sbjct: 75  DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYTTVRGVDKLIPV 134

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRV 180
           D+Y+PGCPP  EA+I  I  L+KK+ R 
Sbjct: 135 DVYLPGCPPKPEAVIDAITKLRKKLSRE 162


>gi|197131362|gb|ACH47199.1| NADH-plastoquinone oxidoreductase subunit K [Sarcocaulon
           vanderietiae]
          Length = 213

 Score =  215 bits (547), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 72/150 (48%), Positives = 102/150 (68%), Gaps = 1/150 (0%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
           T    L T+ + L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPRQ+
Sbjct: 13  TQNSVLSTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 72

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGCDRIVPV 152
           D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++PV
Sbjct: 73  DLVLTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 132

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
           D+Y+PGCPP  EA+I  I  L+KKI R  N
Sbjct: 133 DVYLPGCPPKPEAVIDAITKLRKKIAREIN 162


>gi|22298247|ref|NP_681494.1| NADH dehydrogenase subunit B [Thermosynechococcus elongatus BP-1]
 gi|81743557|sp|Q8DKZ4|NDHK_THEEB RecName: Full=NAD(P)H-quinone oxidoreductase subunit K; AltName:
           Full=NAD(P)H dehydrogenase I subunit K; AltName:
           Full=NDH-1 subunit K; Short=NDH-K
 gi|22294426|dbj|BAC08256.1| NADH dehydrogenase subunit [Thermosynechococcus elongatus BP-1]
          Length = 237

 Score =  215 bits (547), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 71/152 (46%), Positives = 103/152 (67%), Gaps = 2/152 (1%)

Query: 27  SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP 86
             +  E+     ++TS++ +  WAR  SL  + +G ACC +E       R+D +RFG  P
Sbjct: 16  PEVPQELAE-NIILTSLNDVYDWARLSSLWPLMYGTACCFIEFAAMIGSRFDFDRFGLVP 74

Query: 87  RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRG 145
           R SPRQ+D++I +GT+T KMA AL R+Y+QMP P+YVI+MG+C   GG +   SYS VRG
Sbjct: 75  RNSPRQADLIITSGTITMKMAPALVRLYEQMPSPKYVIAMGACTITGGMFSSDSYSAVRG 134

Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
            D+++PVD+Y+PGCPP  EA++  I+ L+KKI
Sbjct: 135 VDKLIPVDVYLPGCPPRPEAIMDAIVKLRKKI 166


>gi|114054388|gb|ABI49782.1| NADH-plastoquinone oxidoreductase subunit K [Platanus occidentalis]
          Length = 285

 Score =  215 bits (547), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 69/154 (44%), Positives = 102/154 (66%), Gaps = 1/154 (0%)

Query: 28  RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
            +    T    + T+ + L  W+R  SL  + +G +CC +E       R+D +R+G  PR
Sbjct: 67  PLLDRTTQNSVISTTPNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 126

Query: 88  ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146
           +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG 
Sbjct: 127 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 186

Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           D+++PVD+Y+PGCPP  EA+I  I  L+KK+ R 
Sbjct: 187 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKVSRE 220


>gi|193215671|ref|YP_001996870.1| NADH-quinone oxidoreductase subunit B [Chloroherpeton thalassium
           ATCC 35110]
 gi|238065009|sp|B3QUS2|NUOB1_CHLT3 RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName:
           Full=NADH dehydrogenase I subunit B 1; AltName:
           Full=NDH-1 subunit B 1
 gi|193089148|gb|ACF14423.1| NADH-quinone oxidoreductase, B subunit [Chloroherpeton thalassium
           ATCC 35110]
          Length = 186

 Score =  215 bits (547), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 75/153 (49%), Positives = 111/153 (72%), Gaps = 2/153 (1%)

Query: 30  SSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRA 88
             +    GFL T++D +  W R  S+  M  GL+CCA+EMM  + PRYD+ RFG    R 
Sbjct: 3   GQQGMGDGFLTTTLDAITNWGRANSIWPMPMGLSCCAIEMMAMAGPRYDIARFGAEVFRF 62

Query: 89  SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 148
           SPRQSD+MIVAGT+T KMA+ +++++DQMPEP++ I+MG+C++ GG +  SY VV+G D+
Sbjct: 63  SPRQSDLMIVAGTVTYKMATVVKKIWDQMPEPKWCIAMGACSSSGGMFR-SYPVVQGIDQ 121

Query: 149 IVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
            +PVD+YVPGCPP  +A+I+ ++ +Q+KI+R  
Sbjct: 122 FLPVDVYVPGCPPRPDAVIHAVMEIQEKIKRQK 154


>gi|296268274|ref|YP_003650906.1| NADH-quinone oxidoreductase subunit B [Thermobispora bispora DSM
           43833]
 gi|296091061|gb|ADG87013.1| NADH-quinone oxidoreductase, B subunit [Thermobispora bispora DSM
           43833]
          Length = 183

 Score =  215 bits (547), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 79/152 (51%), Positives = 108/152 (71%), Gaps = 2/152 (1%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR-AS 89
            E    GFL+T+V++ V WAR  S+   TFGLACCA+E+M    P++DL RFG     A+
Sbjct: 4   EEKLPSGFLLTTVEKAVGWARKNSVWPATFGLACCAIELMATGGPKHDLARFGMERASAT 63

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQ+D+MIVAG ++ KMA  +RR+YDQM EP++VI+MG CA+ GG ++  Y+VV+G D I
Sbjct: 64  PRQADLMIVAGRVSQKMAPVVRRIYDQMAEPKWVIAMGVCASSGGMFNN-YAVVQGVDHI 122

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
           VPVD+Y+PGCPP  E LI  I+ L  KI+ + 
Sbjct: 123 VPVDVYLPGCPPRPEMLIDAIVKLHDKIQNMK 154


>gi|313901777|ref|ZP_07835202.1| NADH-quinone oxidoreductase, B subunit [Thermaerobacter
           subterraneus DSM 13965]
 gi|313467955|gb|EFR63444.1| NADH-quinone oxidoreductase, B subunit [Thermaerobacter
           subterraneus DSM 13965]
          Length = 236

 Score =  215 bits (547), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 80/144 (55%), Positives = 106/144 (73%)

Query: 37  GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVM 96
           G +   + +LV W R  SL ++ FGLACCA+EMM A   R DL+R G   RASPRQ+D+M
Sbjct: 87  GIVTARLQELVNWGRANSLWYLLFGLACCAIEMMAAGATRTDLDRIGSVFRASPRQADLM 146

Query: 97  IVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV 156
           IV+GT+T KMA  ++ +YDQM EP++VISMG+CA  GG Y+  Y+VV G D+I+PVD+YV
Sbjct: 147 IVSGTVTEKMAPVVKTLYDQMAEPKFVISMGACATNGGPYYQGYNVVDGVDKIIPVDVYV 206

Query: 157 PGCPPTAEALIYGILLLQKKIRRV 180
            GCPP  EAL++ IL LQ K+R+V
Sbjct: 207 AGCPPRPEALVHAILKLQDKVRKV 230


>gi|298674246|ref|YP_003725996.1| NADH-quinone oxidoreductase subunit B [Methanohalobium evestigatum
           Z-7303]
 gi|298287234|gb|ADI73200.1| NADH-quinone oxidoreductase, B subunit [Methanohalobium evestigatum
           Z-7303]
          Length = 189

 Score =  215 bits (547), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 78/175 (44%), Positives = 102/175 (58%), Gaps = 4/175 (2%)

Query: 3   LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62
            T  N           +  V    S   SE   K    T V  ++ W R  SL +MT  +
Sbjct: 6   NTNTNNDAGKPSGELEIPGVITTNSNAISEFLKK----TKVQDIINWGRKNSLWFMTQPM 61

Query: 63  ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122
            CC VEM+      YD +RFG  PR SPRQ+DVMI++G +T K   AL++VY+QMP P++
Sbjct: 62  GCCGVEMIATGCAHYDTDRFGIIPRNSPRQADVMIISGYVTKKYFPALKKVYEQMPSPKW 121

Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
           VI+MG CA  GG ++ SYS V+  D I P+D+Y+PGCPP  EALI G + LQKKI
Sbjct: 122 VIAMGDCAISGGPFYESYSTVQNIDEIFPIDVYIPGCPPRPEALIQGFVELQKKI 176


>gi|46446194|ref|YP_007559.1| NADH-ubiquinone oxidoreductase chain B [Candidatus Protochlamydia
           amoebophila UWE25]
 gi|81627441|sp|Q6MDR5|NUOB_PARUW RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|46399835|emb|CAF23284.1| probable NADH-ubiquinone oxidoreductase chain B [Candidatus
           Protochlamydia amoebophila UWE25]
          Length = 164

 Score =  215 bits (547), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 78/151 (51%), Positives = 110/151 (72%), Gaps = 2/151 (1%)

Query: 29  ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PR 87
           ++ +     FL+  +++LV WAR+ SL    FGLACCA+EMM  +  RYDL RFG    R
Sbjct: 3   MNHQQEKTPFLIAPLEKLVNWARSNSLWPAQFGLACCAIEMMSTAASRYDLARFGMEVFR 62

Query: 88  ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCD 147
           ASPRQSDVMIVAG ++ KMA  L+ +Y+QM EP++VI+MG CA+ GG Y+  Y++++G D
Sbjct: 63  ASPRQSDVMIVAGRVSQKMAPVLQTIYEQMLEPKWVIAMGDCASCGGVYNN-YAIIQGVD 121

Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           ++VPVD+Y+ GCPP  EALI  +++LQ KI+
Sbjct: 122 KLVPVDVYLAGCPPRPEALIDALIMLQNKIK 152


>gi|284054939|ref|ZP_06385149.1| NADH dehydrogenase subunit B [Arthrospira platensis str. Paraca]
 gi|291566379|dbj|BAI88651.1| NADH dehydrogenase subunit K [Arthrospira platensis NIES-39]
          Length = 241

 Score =  215 bits (547), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 72/168 (42%), Positives = 108/168 (64%), Gaps = 2/168 (1%)

Query: 11  ISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMM 70
               S  +      +  +++ E++    ++T+VD L  WAR  SL  + +G ACC +E  
Sbjct: 3   TQSPSPNTTIINPMERPQVTQELSE-NVILTTVDDLYNWARLSSLWPLLYGTACCFIEFA 61

Query: 71  QASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCA 130
                R+D +RFG  PR+SPRQ+D++I AGT+T K +  L R+Y+QMPEP+YVI+MG+C 
Sbjct: 62  GLIGSRFDFDRFGLVPRSSPRQADLLITAGTITMKYSPMLVRLYEQMPEPKYVIAMGACT 121

Query: 131 NGGGYYH-YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
             GG +   S + VRG D+++PVD+Y+PGCPP  EA+I  I+ L+KKI
Sbjct: 122 VTGGMFSMDSTTAVRGVDKLIPVDVYIPGCPPRPEAIIDAIIKLRKKI 169


>gi|326800573|ref|YP_004318392.1| NAD(P)H-quinone oxidoreductase subunit K [Sphingobacterium sp. 21]
 gi|326551337|gb|ADZ79722.1| NAD(P)H-quinone oxidoreductase subunit K [Sphingobacterium sp. 21]
          Length = 163

 Score =  214 bits (546), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 87/149 (58%), Positives = 110/149 (73%), Gaps = 1/149 (0%)

Query: 30  SSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS 89
           +S  T  G +V  +D L+ WAR  S+  ++FG+ACCA+EMM A    YDL+R+G  PRAS
Sbjct: 3   TSTQTDSGIVVAKLDDLLNWARLSSMWPVSFGIACCAIEMMGAMAATYDLDRYGVFPRAS 62

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDR 148
           PRQ+DV+I+AGT+T KMA  +R +Y+QMPEP+YVISMGSC+N GG Y    Y VV+G D+
Sbjct: 63  PRQADVIIIAGTVTFKMADRIRLLYEQMPEPKYVISMGSCSNCGGPYWQHGYHVVKGVDK 122

Query: 149 IVPVDIYVPGCPPTAEALIYGILLLQKKI 177
           I+PVDIYV GCPP  EALI   L LQKKI
Sbjct: 123 IIPVDIYVQGCPPRPEALIGAFLELQKKI 151


>gi|159899599|ref|YP_001545846.1| NADH dehydrogenase subunit B [Herpetosiphon aurantiacus ATCC 23779]
 gi|238065011|sp|A9B4Z5|NUOB1_HERA2 RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName:
           Full=NADH dehydrogenase I subunit B 1; AltName:
           Full=NDH-1 subunit B 1
 gi|159892638|gb|ABX05718.1| NADH-quinone oxidoreductase, B subunit [Herpetosiphon aurantiacus
           ATCC 23779]
          Length = 179

 Score =  214 bits (546), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 81/154 (52%), Positives = 109/154 (70%), Gaps = 2/154 (1%)

Query: 29  ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-R 87
           +  +    G + T+++ +V W RT ++  M FGLACCA+EMM      YD+ RFG    R
Sbjct: 3   LEEKAGDLGIVTTTLEGVVNWGRTKAMWPMLFGLACCAIEMMAGQASNYDMSRFGLELMR 62

Query: 88  ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCD 147
           ASPRQ+D+MIVAG ++ KMA  LRR+YDQMPEP++V++MG CA+ GG Y+  Y++V+G D
Sbjct: 63  ASPRQADLMIVAGRVSRKMAPVLRRLYDQMPEPKWVVAMGDCASCGGVYNN-YAIVQGVD 121

Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
            IVPVD+YV GCPP  EALI GIL L +KI+R  
Sbjct: 122 EIVPVDVYVAGCPPRPEALIDGILQLHEKIKRDK 155


>gi|134103329|ref|YP_001108990.1| NADH dehydrogenase subunit B [Saccharopolyspora erythraea NRRL
           2338]
 gi|291004452|ref|ZP_06562425.1| NADH dehydrogenase subunit B [Saccharopolyspora erythraea NRRL
           2338]
 gi|238065203|sp|A4FPU0|NUOB_SACEN RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|133915952|emb|CAM06065.1| NADH dehydrogenase I chain B [Saccharopolyspora erythraea NRRL
           2338]
          Length = 220

 Score =  214 bits (546), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 80/148 (54%), Positives = 104/148 (70%), Gaps = 2/148 (1%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89
            E    G L+ +V++LV W R  S+    FGLACCA+EMM     RYD+ RFG     A+
Sbjct: 4   EEKLPNGILLANVEKLVNWTRKTSVWPAAFGLACCAIEMMTVGGSRYDIARFGMERFSAT 63

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQ+D+M+VAG +TNKMA  LR+VYDQMPEPR+VI+MG CA+ GG ++  Y+VV+G D +
Sbjct: 64  PRQADLMVVAGRVTNKMAPVLRQVYDQMPEPRWVIAMGVCASSGGMFNN-YAVVQGVDHV 122

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKI 177
           VPVD+Y+PGCPP  E L+  IL L  KI
Sbjct: 123 VPVDMYLPGCPPRPEMLLDAILKLHAKI 150


>gi|94267895|ref|ZP_01291027.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit [delta
           proteobacterium MLMS-1]
 gi|93451814|gb|EAT02564.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit [delta
           proteobacterium MLMS-1]
          Length = 177

 Score =  214 bits (546), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 75/162 (46%), Positives = 107/162 (66%), Gaps = 3/162 (1%)

Query: 19  LEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78
           +  +  D  ++  +          +D+L+   R  SL  +TFGLACCA+EMM     R+D
Sbjct: 1   MTNLSKDLKQLRQDEHPPVVQFAVLDKLLNLGRANSLWPLTFGLACCAIEMMATGASRFD 60

Query: 79  LERFGF-APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137
           L+RFG    R +P+QSDVMIVAGT++ KMA A+  +Y+QMP P++VI+MG+CA  GG + 
Sbjct: 61  LDRFGMGVFRPAPKQSDVMIVAGTVSKKMAPAVVTLYEQMPHPKWVIAMGNCAISGGPFA 120

Query: 138 --YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
               Y +V G D+IVPVD+Y+PGCPP  EALI G+L L++K+
Sbjct: 121 FEGQYGIVEGADKIVPVDVYIPGCPPRPEALIEGLLQLEEKL 162


>gi|91203915|emb|CAJ71568.1| strongly similar to proton-translocating NADH dehydrogenase I chain
           B [Candidatus Kuenenia stuttgartiensis]
          Length = 155

 Score =  214 bits (546), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 81/150 (54%), Positives = 111/150 (74%), Gaps = 2/150 (1%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89
                   L T++  +V WAR  SL  M FGLACCA+EMM    PR+DL RFG    R S
Sbjct: 4   ESHLGDNILTTTLTTMVNWARKSSLWPMPFGLACCAIEMMAVVAPRHDLARFGAEVFRFS 63

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQSD+MIVAGTLT KMAS  +++Y+QMPEP++V++MG+CA  GG ++ +YSVV+G +++
Sbjct: 64  PRQSDLMIVAGTLTYKMASVAKKIYEQMPEPKWVVAMGACAVSGGVFN-TYSVVQGLEQV 122

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           +PVD+Y+PGCPP  EALI+ I+ +QKKI++
Sbjct: 123 IPVDVYLPGCPPRPEALIHAIMEIQKKIQK 152


>gi|302035622|ref|YP_003795944.1| NADH-quinone oxidoreductase subunit B [Candidatus Nitrospira
           defluvii]
 gi|300603686|emb|CBK40017.1| NADH-quinone oxidoreductase, subunit B [Candidatus Nitrospira
           defluvii]
          Length = 175

 Score =  214 bits (546), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 89/145 (61%), Positives = 110/145 (75%), Gaps = 2/145 (1%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APRASPRQSDVM 96
            +  +V++ V WAR GSL  MTFGLACCA+EM+ A   RYD++R+G    RASPRQSD+M
Sbjct: 17  VITLTVEKAVNWARKGSLWPMTFGLACCAIEMIAAVSSRYDMDRYGAGVFRASPRQSDLM 76

Query: 97  IVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV 156
           IVAGT+  +MA  +R++YDQMPEP+YVI+MGSCA  G  Y  SYSVV+G DR VPVDIYV
Sbjct: 77  IVAGTVCRRMAPVIRKIYDQMPEPKYVIAMGSCATSGNIY-DSYSVVQGVDRFVPVDIYV 135

Query: 157 PGCPPTAEALIYGILLLQKKIRRVG 181
           PGCPPT EAL  GIL LQ++I +  
Sbjct: 136 PGCPPTPEALFDGILKLQERIMQKR 160


>gi|296122635|ref|YP_003630413.1| NADH-quinone oxidoreductase, subunit beta [Planctomyces limnophilus
           DSM 3776]
 gi|296014975|gb|ADG68214.1| NADH-quinone oxidoreductase, B subunit [Planctomyces limnophilus
           DSM 3776]
          Length = 225

 Score =  214 bits (546), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 81/146 (55%), Positives = 113/146 (77%), Gaps = 2/146 (1%)

Query: 35  HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APRASPRQS 93
            +  +VT+++Q + W +  S+  +TFG+ACCA+EMM   M +YDL+RFG  A RA+PRQ+
Sbjct: 33  EENLIVTTLEQAMNWGQLSSVWPLTFGIACCAMEMMATGMSKYDLDRFGSGAFRATPRQA 92

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY-YHYSYSVVRGCDRIVPV 152
           D+MIVAGT+T KMAS +RR+YDQMP+P+YVI+MG+C  GGG  + Y Y VV+G D +VPV
Sbjct: 93  DLMIVAGTVTYKMASRIRRLYDQMPDPKYVIAMGACTIGGGPYFKYGYHVVKGVDLVVPV 152

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIR 178
           D+Y+PGCPP  EAL+ G++ +Q KIR
Sbjct: 153 DVYIPGCPPRPEALLEGVMRIQDKIR 178


>gi|219847965|ref|YP_002462398.1| NADH dehydrogenase subunit B [Chloroflexus aggregans DSM 9485]
 gi|238065007|sp|B8G705|NUOB1_CHLAD RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName:
           Full=NADH dehydrogenase I subunit B 1; AltName:
           Full=NDH-1 subunit B 1
 gi|219542224|gb|ACL23962.1| NADH-quinone oxidoreductase, B subunit [Chloroflexus aggregans DSM
           9485]
          Length = 174

 Score =  214 bits (545), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 79/154 (51%), Positives = 110/154 (71%), Gaps = 2/154 (1%)

Query: 29  ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APR 87
           I  +  + G + T+++ +V W RT ++  + FGLACCA+EMM A    YDL RFG    R
Sbjct: 3   IEEKAGNLGIVTTTLETVVNWGRTNAMWPLLFGLACCAIEMMGAQASNYDLSRFGMELNR 62

Query: 88  ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCD 147
           ASPRQ+D+MIVAG ++ KMA  +RR+YDQMPEP++VI+MG CA  GG ++  Y++V+G D
Sbjct: 63  ASPRQADLMIVAGRVSRKMAPVVRRLYDQMPEPKWVIAMGDCAACGGIFNN-YAIVQGVD 121

Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
            +VPVD+YV GCPP  EALI GI++L +K+ R  
Sbjct: 122 EVVPVDVYVAGCPPRPEALIDGIMMLHQKVMREK 155


>gi|124515815|gb|EAY57324.1| NADH dehydrogenase (ubiquinone), B subunit [Leptospirillum rubarum]
          Length = 178

 Score =  214 bits (545), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 91/146 (62%), Positives = 113/146 (77%), Gaps = 2/146 (1%)

Query: 39  LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APRASPRQSDVMI 97
           L  +V++L+ W+R  +L  MTFGLACCA+EMM A   R+D++RFG    RASPRQSD+MI
Sbjct: 18  LQDAVNELLNWSRKSALWPMTFGLACCAIEMMGAVASRFDIDRFGAGVFRASPRQSDLMI 77

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGTLT KMA  +RR+YDQMPEPRYVI+MGSCA  G  Y  SYSVV+G DRI+PVD+YVP
Sbjct: 78  VAGTLTRKMAPVVRRIYDQMPEPRYVIAMGSCATSGNIY-DSYSVVQGVDRIIPVDVYVP 136

Query: 158 GCPPTAEALIYGILLLQKKIRRVGNV 183
           GCPP  EAL+ G++ LQ+KI +   V
Sbjct: 137 GCPPRPEALLDGLMKLQEKIMKDRPV 162


>gi|11304|emb|CAA45612.1| ndhK [Glycine max]
          Length = 224

 Score =  214 bits (545), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 67/154 (43%), Positives = 101/154 (65%), Gaps = 1/154 (0%)

Query: 28  RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
            +  + T    + T++  L  W+R  SL  + +G +CC +E       R+D +R+G  PR
Sbjct: 4   PLLDQTTKNSVISTTLIDLSNWSRLPSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 63

Query: 88  ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146
           +SPRQ+D+++  GT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG 
Sbjct: 64  SSPRQADLILTVGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 123

Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           D+++PVD+Y+PGCP   EA+I  I  L+K+I R 
Sbjct: 124 DKLIPVDVYLPGCPTKPEAIIDAITKLRKEISRE 157


>gi|253698814|ref|YP_003020003.1| trifunctional NADH dehydrogenase I subunit B/C/D [Geobacter sp.
           M21]
 gi|251773664|gb|ACT16245.1| NADH dehydrogenase I, D subunit [Geobacter sp. M21]
          Length = 794

 Score =  214 bits (545), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 79/154 (51%), Positives = 109/154 (70%), Gaps = 2/154 (1%)

Query: 26  FSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA 85
            S+   +   +  L  S+D ++ W R  SL  M FGL+CC VEMM +   RYD+ RFG  
Sbjct: 1   MSQGDDDKIPENVLFASLDDMINWGRANSLWPMFFGLSCCFVEMMTSFTSRYDVSRFGAE 60

Query: 86  P-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR 144
             R +PR+SD+M++AGT+  KMA ++ R+YDQM EP++VISMGSCAN GG Y   YSVV+
Sbjct: 61  VLRGTPRESDLMVIAGTVFKKMAPSILRLYDQMAEPKWVISMGSCANSGGMY-DVYSVVQ 119

Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           G D+I+PVD+Y+PGCPP  E+ + G++LLQ+KIR
Sbjct: 120 GVDQILPVDLYIPGCPPRPESFLEGLMLLQQKIR 153


>gi|171910632|ref|ZP_02926102.1| NADH-quinone oxidoreductase, B subunit [Verrucomicrobium spinosum
           DSM 4136]
          Length = 177

 Score =  214 bits (545), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 76/151 (50%), Positives = 107/151 (70%), Gaps = 2/151 (1%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQ 92
                ++T +D  + W R  SL  M  GLACCA+E+M  +  RYD+ RFG    R SPRQ
Sbjct: 16  IESNVVITRLDAAINWMRKNSLWPMPMGLACCAIELMATASSRYDISRFGAEVFRFSPRQ 75

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           SDVM+VAGT+T KMA A++R++DQMPEP++ I+MG+CA+ GG Y  SY+V++G DR++PV
Sbjct: 76  SDVMVVAGTVTYKMALAVKRIWDQMPEPKWCIAMGACASSGGMYR-SYAVLQGIDRLIPV 134

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           D+Y+ GCPP  EAL+ G   LQ+KI +  ++
Sbjct: 135 DVYISGCPPRPEALLEGFFRLQQKIEKEHSL 165


>gi|163848441|ref|YP_001636485.1| NADH dehydrogenase subunit B [Chloroflexus aurantiacus J-10-fl]
 gi|222526369|ref|YP_002570840.1| NADH dehydrogenase subunit B [Chloroflexus sp. Y-400-fl]
 gi|238065028|sp|A9WFB2|NUOB2_CHLAA RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName:
           Full=NADH dehydrogenase I subunit B 2; AltName:
           Full=NDH-1 subunit B 2
 gi|238065030|sp|B9LAU1|NUOB2_CHLSY RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName:
           Full=NADH dehydrogenase I subunit B 2; AltName:
           Full=NDH-1 subunit B 2
 gi|163669730|gb|ABY36096.1| NADH-quinone oxidoreductase, B subunit [Chloroflexus aurantiacus
           J-10-fl]
 gi|222450248|gb|ACM54514.1| NADH-quinone oxidoreductase, B subunit [Chloroflexus sp. Y-400-fl]
          Length = 174

 Score =  214 bits (545), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 79/154 (51%), Positives = 110/154 (71%), Gaps = 2/154 (1%)

Query: 29  ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APR 87
           I  +  + G + T+++ +V W RT ++  + FGLACCA+EMM A    YDL RFG    R
Sbjct: 3   IEEKAGNLGIVTTTLETVVNWGRTNAMWPLLFGLACCAIEMMGAQASNYDLSRFGMELNR 62

Query: 88  ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCD 147
           ASPRQ+D+MIVAG ++ KMA  +RR+YDQMPEP++VI+MG CA  GG ++  Y++V+G D
Sbjct: 63  ASPRQADLMIVAGRVSRKMAPVVRRLYDQMPEPKWVIAMGDCAACGGIFNN-YAIVQGVD 121

Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
            +VPVD+YV GCPP  EALI GI++L +K+ R  
Sbjct: 122 EVVPVDVYVAGCPPRPEALIDGIMMLHQKVMREK 155


>gi|311897891|dbj|BAJ30299.1| putative NADH-quinone oxidoreductase subunit B [Kitasatospora setae
           KM-6054]
          Length = 184

 Score =  214 bits (545), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 83/152 (54%), Positives = 104/152 (68%), Gaps = 2/152 (1%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89
            E    GFL+TSV+    W R  SL   TFGLACCA+EMM     RYDL RFG    R S
Sbjct: 4   EEKLPSGFLLTSVEAAAGWVRKASLFPATFGLACCAIEMMTTGAGRYDLARFGMEVFRGS 63

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQ+D+MIVAG ++ KMA  LR+VYDQMP P++VISMG CA+ GG ++  Y++V+G D I
Sbjct: 64  PRQADLMIVAGRVSQKMAPVLRQVYDQMPNPKWVISMGVCASSGGMFNN-YAIVQGVDHI 122

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
           VPVDIY+PGCPP  E L+  I+ L +KI+   
Sbjct: 123 VPVDIYLPGCPPRPEMLLDAIIKLHEKIQHEK 154


>gi|227822752|ref|YP_002826724.1| NADH dehydrogenase subunit B [Sinorhizobium fredii NGR234]
 gi|227341753|gb|ACP25971.1| NADH dehydrogenase I chain B1 [Sinorhizobium fredii NGR234]
          Length = 167

 Score =  214 bits (544), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 82/150 (54%), Positives = 111/150 (74%), Gaps = 1/150 (0%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
                L T+ D +++W+R  +L   TFG+ACCA+EM+ A   RYDL+RFG   R SPRQS
Sbjct: 8   IRDSVLFTTADSVISWSRRSALWPETFGIACCAIEMISAGCARYDLDRFGVVFRPSPRQS 67

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD 153
           DVMI+AGT+T K A  +RR+YDQMPEPR+VI+MG+CA  GG Y+ +Y+VV+G    VPVD
Sbjct: 68  DVMIIAGTVTRKFAPVVRRLYDQMPEPRWVIAMGTCAISGGVYN-TYAVVQGAQTFVPVD 126

Query: 154 IYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           ++VPGCPP  EAL++G LLLQ+KI++   +
Sbjct: 127 VHVPGCPPRPEALMHGFLLLQEKIKKDRAL 156


>gi|305666195|ref|YP_003862482.1| NADH-quinone oxidoreductase chain B [Maribacter sp. HTCC2170]
 gi|88707694|gb|EAQ99935.1| NADH-quinone oxidoreductase chain B [Maribacter sp. HTCC2170]
          Length = 185

 Score =  214 bits (544), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 84/162 (51%), Positives = 116/162 (71%), Gaps = 3/162 (1%)

Query: 20  EKVDADFS-RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78
            ++  DF  ++         +VTS+D+++ W R+ SL  + FG +CCA+EMMQ    R+D
Sbjct: 6   PEIPEDFPGKVIPAGNGANVIVTSLDKIINWGRSNSLWSLYFGTSCCAIEMMQTGAARHD 65

Query: 79  LERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY- 136
             RFGF   R SPRQ+D++I+AGT+ NKMA  LRR+YDQM EPRYVI+MG+CA  GG + 
Sbjct: 66  YSRFGFEVARPSPRQADLIIIAGTIVNKMAPVLRRLYDQMAEPRYVIAMGACAISGGPFF 125

Query: 137 HYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           + +YSVV+G D ++PVD+YVPGCPP  EAL+ G+L+LQ KIR
Sbjct: 126 YNTYSVVKGADHVIPVDVYVPGCPPRPEALLEGMLMLQDKIR 167


>gi|290998039|ref|XP_002681588.1| predicted protein [Naegleria gruberi]
 gi|284095213|gb|EFC48844.1| predicted protein [Naegleria gruberi]
          Length = 174

 Score =  214 bits (544), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 99/147 (67%), Positives = 114/147 (77%), Gaps = 3/147 (2%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           +    FL   +  L  WART SL  ++FGLACCAVEMM  S  RYD+ER G   R +PRQ
Sbjct: 1   MAKAEFLKAPIHDLYAWARTSSLWPVSFGLACCAVEMMHTSASRYDIERMGIFYRPTPRQ 60

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           SD MI+AGTLTNKMA ALR+V+DQM EP+Y ISMGSCANGGGYYHYSY VVRG D+IVPV
Sbjct: 61  SDAMIIAGTLTNKMAPALRKVWDQMSEPKYSISMGSCANGGGYYHYSYHVVRGADQIVPV 120

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179
           D+YVPGCPPT   L+YGI +LQKKI+R
Sbjct: 121 DVYVPGCPPT---LLYGIYMLQKKIKR 144


>gi|159039974|ref|YP_001539227.1| NADH-quinone oxidoreductase, B subunit [Salinispora arenicola
           CNS-205]
 gi|238065040|sp|A8M621|NUOB2_SALAI RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName:
           Full=NADH dehydrogenase I subunit B 2; AltName:
           Full=NDH-1 subunit B 2
 gi|157918809|gb|ABW00237.1| NADH-quinone oxidoreductase, B subunit [Salinispora arenicola
           CNS-205]
          Length = 226

 Score =  214 bits (544), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 81/151 (53%), Positives = 109/151 (72%), Gaps = 2/151 (1%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89
            E    G L+TSV++LV W+R  S+   TFGLACCA+EMM A  P YD+ R+G    RAS
Sbjct: 4   EEKLPAGVLLTSVEKLVNWSRKSSVWGATFGLACCAIEMMAAGGPHYDMGRWGMEVFRAS 63

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQ+D+MIVAG ++ KMA  LR++YDQM EPR+V+SMG CA+ GG ++  Y++V+G D +
Sbjct: 64  PRQADLMIVAGRVSQKMAPVLRQIYDQMAEPRWVLSMGVCASSGGMFNN-YAIVQGVDHV 122

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           VPVD+Y+PGCPP  E LI  +L L++KI   
Sbjct: 123 VPVDMYLPGCPPRPEMLIDAVLKLREKIMHE 153


>gi|87311558|ref|ZP_01093676.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit [Blastopirellula
           marina DSM 3645]
 gi|87285680|gb|EAQ77596.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit [Blastopirellula
           marina DSM 3645]
          Length = 198

 Score =  214 bits (544), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 82/146 (56%), Positives = 112/146 (76%), Gaps = 2/146 (1%)

Query: 35  HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APRASPRQS 93
            +  + T+++Q + WA+  S+  MTFGLACCA+EMM A   RYDL+RFG  A RA+PRQ+
Sbjct: 11  EENVVFTTLEQAINWAQQSSIWPMTFGLACCAIEMMAAGASRYDLDRFGAGAFRATPRQA 70

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY-YHYSYSVVRGCDRIVPV 152
           D+MIVAGT+T KMAS +RR+Y+ MP+P+YVI+MG+C  GGG  + Y Y VV+G D +VPV
Sbjct: 71  DLMIVAGTVTYKMASRVRRLYNMMPDPKYVIAMGACTVGGGPYFKYGYHVVKGVDLVVPV 130

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIR 178
           D+YVPGCPP  EAL+ G++ +Q KI+
Sbjct: 131 DVYVPGCPPRPEALLEGLMRIQDKIK 156


>gi|302523878|ref|ZP_07276220.1| NADH dehydrogenase subunit I B [Streptomyces sp. AA4]
 gi|302432773|gb|EFL04589.1| NADH dehydrogenase subunit I B [Streptomyces sp. AA4]
          Length = 182

 Score =  214 bits (544), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 81/149 (54%), Positives = 103/149 (69%), Gaps = 2/149 (1%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89
            E    G L+ S++ LV WAR  SL   TFGLACCA EMM     RYD+ RFG     A+
Sbjct: 4   EEKLPNGILLASLEGLVNWARKNSLWPATFGLACCAFEMMSVGGSRYDIARFGMERFSAT 63

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQ+D+MIVAG +T KMA  LR++YDQM EP++V+SMG CA+ GG ++  Y+VV+G D I
Sbjct: 64  PRQADLMIVAGRVTQKMAPVLRQIYDQMAEPKWVLSMGVCASSGGMFNN-YAVVQGVDHI 122

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           VPVD+Y+PGCPP  E L+  IL L  KI+
Sbjct: 123 VPVDMYLPGCPPRPEMLLDAILKLHAKIQ 151


>gi|239929613|ref|ZP_04686566.1| NADH dehydrogenase subunit B [Streptomyces ghanaensis ATCC 14672]
 gi|291437937|ref|ZP_06577327.1| NuoB [Streptomyces ghanaensis ATCC 14672]
 gi|291340832|gb|EFE67788.1| NuoB [Streptomyces ghanaensis ATCC 14672]
          Length = 184

 Score =  214 bits (544), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 82/152 (53%), Positives = 105/152 (69%), Gaps = 2/152 (1%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89
            E    GFL+T+V+Q   W R  S+   TFGLACCA+EMM     RYDL RFG    R S
Sbjct: 4   EEKLPSGFLLTTVEQAAGWVRKSSVFPATFGLACCAIEMMTTGAGRYDLARFGMEVFRGS 63

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQ+D+MIVAG ++ KMA  LR+VYDQMP P++VISMG CA+ GG ++  Y++V+G D +
Sbjct: 64  PRQADLMIVAGRVSQKMAPVLRQVYDQMPNPKWVISMGVCASSGGMFNN-YAIVQGVDHV 122

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
           VPVDIY+PGCPP  E L+  IL L +KI+   
Sbjct: 123 VPVDIYLPGCPPRPEMLLDAILKLHQKIQNSK 154


>gi|330465203|ref|YP_004402946.1| NADH dehydrogenase subunit B [Verrucosispora maris AB-18-032]
 gi|328808174|gb|AEB42346.1| NADH dehydrogenase subunit B [Verrucosispora maris AB-18-032]
          Length = 225

 Score =  214 bits (544), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 82/148 (55%), Positives = 109/148 (73%), Gaps = 2/148 (1%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89
            E    G L+TSV++LV W+R  S+   TFGLACCA+EMM A  P YD+ R+G    RAS
Sbjct: 4   EEKLPAGVLLTSVEKLVNWSRKSSVWGATFGLACCAIEMMAAGGPHYDMGRWGMEVFRAS 63

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQ+D+MIVAG ++ KMA  LR++YDQM EPR+V+SMG CA+ GG ++  Y++V+G D +
Sbjct: 64  PRQADLMIVAGRVSQKMAPVLRQIYDQMAEPRWVLSMGVCASSGGMFNN-YAIVQGVDHV 122

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKI 177
           VPVD+Y+PGCPP  E LI  IL L++KI
Sbjct: 123 VPVDMYLPGCPPRPEMLIDAILKLREKI 150


>gi|145596575|ref|YP_001160872.1| NADH-quinone oxidoreductase, B subunit [Salinispora tropica
           CNB-440]
 gi|238065041|sp|A4XC37|NUOB2_SALTO RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName:
           Full=NADH dehydrogenase I subunit B 2; AltName:
           Full=NDH-1 subunit B 2
 gi|145305912|gb|ABP56494.1| NADH-quinone oxidoreductase, B subunit [Salinispora tropica
           CNB-440]
          Length = 226

 Score =  214 bits (544), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 81/151 (53%), Positives = 108/151 (71%), Gaps = 2/151 (1%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89
            E    G L+TSV++ V W+R  S+   TFGLACCA+EMM A  P YD+ R+G    RAS
Sbjct: 4   EEKLPAGVLLTSVEKFVNWSRKSSVWGATFGLACCAIEMMAAGGPHYDMGRWGMEVFRAS 63

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQ+D+MIVAG ++ KMA  LR++YDQM EPR+V+SMG CA+ GG ++  Y++V+G D +
Sbjct: 64  PRQADLMIVAGRVSQKMAPVLRQIYDQMAEPRWVLSMGVCASSGGMFNN-YAIVQGVDHV 122

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           VPVD+Y+PGCPP  E LI  IL L++KI   
Sbjct: 123 VPVDMYLPGCPPRPEMLIDAILKLREKIMHE 153


>gi|256371181|ref|YP_003109005.1| NADH-quinone oxidoreductase, B subunit [Acidimicrobium ferrooxidans
           DSM 10331]
 gi|256007765|gb|ACU53332.1| NADH-quinone oxidoreductase, B subunit [Acidimicrobium ferrooxidans
           DSM 10331]
          Length = 180

 Score =  214 bits (544), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 83/149 (55%), Positives = 105/149 (70%), Gaps = 2/149 (1%)

Query: 37  GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQSDV 95
            FL   ++ LV WAR  S+   TFGLACCA+EMM A    +DL RFG    RASPRQ+D+
Sbjct: 9   NFLTARLEDLVNWARKSSVWPATFGLACCAIEMMAAGAADFDLARFGMEVFRASPRQADL 68

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
           MIVAG ++ KMA  LR+VYDQMPEP++VISMG CA+ GG ++  Y++V+G D IVPVD+Y
Sbjct: 69  MIVAGRVSQKMAPVLRQVYDQMPEPKWVISMGVCASSGGMFNN-YAIVQGVDEIVPVDVY 127

Query: 156 VPGCPPTAEALIYGILLLQKKIRRVGNVK 184
            PGCPP  E LI  IL L +KIR    ++
Sbjct: 128 APGCPPGPETLIRAILTLHEKIRHTPILR 156


>gi|197116578|ref|YP_002137005.1| trifunctional NADH dehydrogenase subunit I B/C/D [Geobacter
           bemidjiensis Bem]
 gi|218528047|sp|B5E972|NUBCD_GEOBB RecName: Full=NADH-quinone oxidoreductase subunit B/C/D; AltName:
           Full=NADH dehydrogenase I subunit B/C/D; AltName:
           Full=NDH-1 subunit B/C/D
 gi|197085938|gb|ACH37209.1| NADH dehydrogenase I, B/C/D subunits [Geobacter bemidjiensis Bem]
          Length = 794

 Score =  214 bits (544), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 78/154 (50%), Positives = 110/154 (71%), Gaps = 2/154 (1%)

Query: 26  FSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA 85
            S+   +   +  L+ S+D ++ W R  SL  M FGL+CC VEMM +   RYD+ RFG  
Sbjct: 1   MSQGDDDKIPENVLLASLDDMINWGRANSLWPMFFGLSCCFVEMMTSFTSRYDVSRFGAE 60

Query: 86  P-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR 144
             R +PR+SD+M++AGT+  KMA ++ R+YDQM EP++VISMGSCAN GG Y   YSVV+
Sbjct: 61  VLRGTPRESDLMVIAGTVFKKMAPSILRLYDQMAEPKWVISMGSCANSGGMY-DVYSVVQ 119

Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           G ++I+PVD+Y+PGCPP  E+ + G++LLQ+KIR
Sbjct: 120 GVNQILPVDLYIPGCPPRPESFLEGLMLLQQKIR 153


>gi|86606638|ref|YP_475401.1| NADH dehydrogenase subunit B [Synechococcus sp. JA-3-3Ab]
 gi|123505801|sp|Q2JT69|NDHK_SYNJA RecName: Full=NAD(P)H-quinone oxidoreductase subunit K; AltName:
           Full=NAD(P)H dehydrogenase I subunit K; AltName:
           Full=NDH-1 subunit K; Short=NDH-K
 gi|86555180|gb|ABD00138.1| NADH-ubiquinone/plastoquinone oxidoreductase, K subunit
           [Synechococcus sp. JA-3-3Ab]
          Length = 244

 Score =  213 bits (543), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 69/156 (44%), Positives = 108/156 (69%), Gaps = 2/156 (1%)

Query: 23  DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82
            A   ++++++++   ++T+V+ L  WA+  SL  + +G ACC +E       R+D +RF
Sbjct: 11  PASAPQVTTDLSN-NVVLTTVNDLYNWAKMSSLWPLLYGTACCFIEFAAMLGSRFDFDRF 69

Query: 83  GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYS 141
           G  PR+SPR +D++I AGT+T KMA AL ++Y QM EP+YVI+MG+C   GG +   SY+
Sbjct: 70  GLLPRSSPRTADLIITAGTVTMKMAPALVKLYQQMAEPKYVIAMGACTISGGMFSSDSYT 129

Query: 142 VVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
            VRG D+++PVD+Y+PGCPP  EA++  I+ L+KKI
Sbjct: 130 AVRGVDKLIPVDVYIPGCPPRPEAIMDAIVKLRKKI 165


>gi|86609773|ref|YP_478535.1| NADH dehydrogenase subunit B [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|123501307|sp|Q2JJA9|NDHK_SYNJB RecName: Full=NAD(P)H-quinone oxidoreductase subunit K; AltName:
           Full=NAD(P)H dehydrogenase I subunit K; AltName:
           Full=NDH-1 subunit K; Short=NDH-K
 gi|86558315|gb|ABD03272.1| NADH-ubiquinone/plastoquinone oxidoreductase, K subunit
           [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 244

 Score =  213 bits (543), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 68/145 (46%), Positives = 99/145 (68%), Gaps = 1/145 (0%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
                ++T+V+ L  WA+  SL  + +G ACC +E       R+D +RFG  PR+SPR +
Sbjct: 21  LSNNVVLTTVNDLYNWAKMSSLWPLLYGTACCFIEFAAMLGSRFDFDRFGLLPRSSPRTA 80

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGCDRIVPV 152
           D++I AGT+T KMA AL ++Y QM EP+YVI+MG+C   GG +   SY+ VRG D+++PV
Sbjct: 81  DLIITAGTVTMKMAPALVKLYQQMAEPKYVIAMGACTISGGMFSSDSYTAVRGVDKLIPV 140

Query: 153 DIYVPGCPPTAEALIYGILLLQKKI 177
           D+Y+PGCPP  EA++  I+ L+KKI
Sbjct: 141 DVYIPGCPPRPEAIMDAIVKLRKKI 165


>gi|57238591|ref|YP_179722.1| NADH dehydrogenase subunit B [Campylobacter jejuni RM1221]
 gi|148925724|ref|ZP_01809412.1| NADH dehydrogenase I chain B [Campylobacter jejuni subsp. jejuni
           CG8486]
 gi|205355593|ref|ZP_03222363.1| NADH dehydrogenase I chain B [Campylobacter jejuni subsp. jejuni
           CG8421]
 gi|81557394|sp|Q5HSL3|NUOB_CAMJR RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|57167395|gb|AAW36174.1| NADH-quinone oxidoreductase, B subunit [Campylobacter jejuni
           RM1221]
 gi|145845734|gb|EDK22825.1| NADH dehydrogenase I chain B [Campylobacter jejuni subsp. jejuni
           CG8486]
 gi|205346370|gb|EDZ33003.1| NADH dehydrogenase I chain B [Campylobacter jejuni subsp. jejuni
           CG8421]
 gi|315059028|gb|ADT73357.1| NADH-ubiquinone oxidoreductase chain B [Campylobacter jejuni subsp.
           jejuni S3]
          Length = 167

 Score =  213 bits (542), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 84/147 (57%), Positives = 111/147 (75%), Gaps = 1/147 (0%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
            ++TSVD+LV W R+ SL  +++GLACCA+EMM A   RYD +RFG   RASPR S+VMI
Sbjct: 14  VVLTSVDKLVQWGRSNSLWALSYGLACCAIEMMAAGGSRYDFDRFGTIFRASPRHSEVMI 73

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           +AGTL  K A   RR+YDQMP+P++VISMGSCAN GG ++ +YS V+G DRI+PVDIYVP
Sbjct: 74  IAGTLCKKHAEFTRRLYDQMPDPKWVISMGSCANTGGMFN-TYSTVQGVDRIIPVDIYVP 132

Query: 158 GCPPTAEALIYGILLLQKKIRRVGNVK 184
           GC P  E+  + +++LQKKIR+    +
Sbjct: 133 GCAPRPESFQFALMILQKKIRKEKASR 159


>gi|57168317|ref|ZP_00367451.1| NADH2 dehydrogenase (ubiquinone) I chain B Cj1578c [Campylobacter
           coli RM2228]
 gi|153952278|ref|YP_001398860.1| NADH dehydrogenase subunit B [Campylobacter jejuni subsp. doylei
           269.97]
 gi|157415794|ref|YP_001483050.1| NADH dehydrogenase subunit B [Campylobacter jejuni subsp. jejuni
           81116]
 gi|305432374|ref|ZP_07401536.1| NADH-quinone oxidoreductase subunit B [Campylobacter coli JV20]
 gi|238055278|sp|A8FNN6|NUOB_CAMJ8 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|254767792|sp|A7H5T0|NUOB_CAMJD RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|57020125|gb|EAL56799.1| NADH2 dehydrogenase (ubiquinone) I chain B Cj1578c [Campylobacter
           coli RM2228]
 gi|152939724|gb|ABS44465.1| NADH-quinone oxidoreductase, B subunit [Campylobacter jejuni subsp.
           doylei 269.97]
 gi|157386758|gb|ABV53073.1| NADH dehydrogenase I chain B [Campylobacter jejuni subsp. jejuni
           81116]
 gi|304444413|gb|EFM37064.1| NADH-quinone oxidoreductase subunit B [Campylobacter coli JV20]
 gi|307748433|gb|ADN91703.1| NADH-quinone oxidoreductase subunit B [Campylobacter jejuni subsp.
           jejuni M1]
 gi|315929523|gb|EFV08716.1| NADH-quinone oxidoreductase, B subunit [Campylobacter jejuni subsp.
           jejuni 305]
 gi|315931258|gb|EFV10228.1| NADH-quinone oxidoreductase, B subunit [Campylobacter jejuni subsp.
           jejuni 327]
          Length = 167

 Score =  213 bits (542), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 84/147 (57%), Positives = 111/147 (75%), Gaps = 1/147 (0%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
            ++TSVD+LV W R+ SL  +++GLACCA+EMM A   RYD +RFG   RASPR S+VMI
Sbjct: 14  VVLTSVDKLVQWGRSNSLWALSYGLACCAIEMMAAGGSRYDFDRFGTIFRASPRHSEVMI 73

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           +AGTL  K A   RR+YDQMP+P++VISMGSCAN GG ++ +YS V+G DRI+PVDIYVP
Sbjct: 74  IAGTLCKKHAEFTRRLYDQMPDPKWVISMGSCANTGGMFN-TYSTVQGVDRIIPVDIYVP 132

Query: 158 GCPPTAEALIYGILLLQKKIRRVGNVK 184
           GC P  E+  + +++LQKKIR+    +
Sbjct: 133 GCAPRPESFQFALMILQKKIRKEKASR 159


>gi|86149321|ref|ZP_01067552.1| NADH-quinone oxidoreductase, B subunit [Campylobacter jejuni subsp.
           jejuni CF93-6]
 gi|86152325|ref|ZP_01070536.1| NADH-quinone oxidoreductase, B subunit [Campylobacter jejuni subsp.
           jejuni 260.94]
 gi|86152543|ref|ZP_01070748.1| nadh-quinone oxidoreductase chain 6 [Campylobacter jejuni subsp.
           jejuni HB93-13]
 gi|88596514|ref|ZP_01099751.1| NADH-quinone oxidoreductase, B subunit [Campylobacter jejuni subsp.
           jejuni 84-25]
 gi|121613264|ref|YP_001001218.1| NADH dehydrogenase subunit B [Campylobacter jejuni subsp. jejuni
           81-176]
 gi|167006111|ref|ZP_02271869.1| NADH dehydrogenase subunit B [Campylobacter jejuni subsp. jejuni
           81-176]
 gi|218563167|ref|YP_002344947.1| NADH dehydrogenase subunit B [Campylobacter jejuni subsp. jejuni
           NCTC 11168]
 gi|283956950|ref|ZP_06374422.1| NADH dehydrogenase I chain B [Campylobacter jejuni subsp. jejuni
           1336]
 gi|315124988|ref|YP_004066992.1| NADH dehydrogenase beta subunit [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
 gi|123336622|sp|Q0P850|NUOB_CAMJE RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|238055279|sp|A1W1H7|NUOB_CAMJJ RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|85840103|gb|EAQ57361.1| NADH-quinone oxidoreductase, B subunit [Campylobacter jejuni subsp.
           jejuni CF93-6]
 gi|85840814|gb|EAQ58065.1| NADH-quinone oxidoreductase, B subunit [Campylobacter jejuni subsp.
           jejuni 260.94]
 gi|85843428|gb|EAQ60638.1| nadh-quinone oxidoreductase chain 6 [Campylobacter jejuni subsp.
           jejuni HB93-13]
 gi|87249799|gb|EAQ72758.1| NADH-quinone oxidoreductase, B subunit [Campylobacter jejuni subsp.
           jejuni 81-176]
 gi|88191355|gb|EAQ95327.1| NADH-quinone oxidoreductase, B subunit [Campylobacter jejuni subsp.
           jejuni 84-25]
 gi|112360874|emb|CAL35675.1| NADH dehydrogenase I chain B [Campylobacter jejuni subsp. jejuni
           NCTC 11168]
 gi|283791451|gb|EFC30248.1| NADH dehydrogenase I chain B [Campylobacter jejuni subsp. jejuni
           1336]
 gi|284926773|gb|ADC29125.1| NADH dehydrogenase I chain B [Campylobacter jejuni subsp. jejuni
           IA3902]
 gi|315018710|gb|ADT66803.1| NADH dehydrogenase beta subunit [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
 gi|315927676|gb|EFV07007.1| NADH-quinone oxidoreductase, B subunit [Campylobacter jejuni subsp.
           jejuni DFVF1099]
          Length = 167

 Score =  213 bits (542), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 84/147 (57%), Positives = 111/147 (75%), Gaps = 1/147 (0%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
            ++TSVD+LV W R+ SL  +++GLACCA+EMM A   RYD +RFG   RASPR S+VMI
Sbjct: 14  VVLTSVDKLVQWGRSNSLWALSYGLACCAIEMMAAGGSRYDFDRFGTIFRASPRHSEVMI 73

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           +AGTL  K A   RR+YDQMP+P++VISMGSCAN GG ++ +YS V+G DRI+PVDIYVP
Sbjct: 74  IAGTLCKKHAEFTRRLYDQMPDPKWVISMGSCANTGGMFN-TYSTVQGVDRIIPVDIYVP 132

Query: 158 GCPPTAEALIYGILLLQKKIRRVGNVK 184
           GC P  E+  + +++LQKKIR+    +
Sbjct: 133 GCAPRPESFQFALMILQKKIRKEKASR 159


>gi|158334544|ref|YP_001515716.1| NADH dehydrogenase subunit B [Acaryochloris marina MBIC11017]
 gi|218527876|sp|B0C6I1|NDHK1_ACAM1 RecName: Full=NAD(P)H-quinone oxidoreductase subunit K 1; AltName:
           Full=NAD(P)H dehydrogenase I subunit K 1; AltName:
           Full=NDH-1 subunit K 1; Short=NDH-K 1
 gi|158304785|gb|ABW26402.1| proton-translocating NAD(P)H-quinone oxidoreductase, chain B,
           putative [Acaryochloris marina MBIC11017]
          Length = 232

 Score =  213 bits (542), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 73/157 (46%), Positives = 107/157 (68%), Gaps = 2/157 (1%)

Query: 22  VDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLER 81
                S+I  E++    +++SV  L  WAR  SL  + +G ACC +E+      R+D +R
Sbjct: 8   NPISQSQIPQELSE-NVILSSVSDLYDWARLSSLWPLMYGTACCFIEIAAMIGSRFDFDR 66

Query: 82  FGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSY 140
           FG  PR+SPRQ+D++I AGT+T KMA AL R+Y+QMP+P+YVI+MG+C   GG +   S 
Sbjct: 67  FGLVPRSSPRQADLIITAGTVTMKMAPALVRLYEQMPDPKYVIAMGACTITGGMFSSDST 126

Query: 141 SVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
           + VRG D+++PVD+Y+PGCPP  EA++  I+ L+KKI
Sbjct: 127 TAVRGVDKLIPVDVYLPGCPPRPEAVMDAIVKLRKKI 163


>gi|223937077|ref|ZP_03628985.1| NADH-quinone oxidoreductase, B subunit [bacterium Ellin514]
 gi|223894358|gb|EEF60811.1| NADH-quinone oxidoreductase, B subunit [bacterium Ellin514]
          Length = 169

 Score =  213 bits (542), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 81/147 (55%), Positives = 107/147 (72%), Gaps = 2/147 (1%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVM 96
            +VT VD  + W R  SL  M  GLACCA+E+M A   RYD+ RFG    R SPRQSDVM
Sbjct: 17  VIVTRVDAALNWFRKNSLWPMPMGLACCAIELMAAGASRYDIARFGSEVMRFSPRQSDVM 76

Query: 97  IVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV 156
           +VAGT+T KMA A++R+YDQMPEP++VI+MG+CA+ GG Y  SY+V++G DRI+PVD+YV
Sbjct: 77  VVAGTVTYKMAMAVKRIYDQMPEPKWVIAMGACASTGGMYR-SYAVLQGVDRIIPVDVYV 135

Query: 157 PGCPPTAEALIYGILLLQKKIRRVGNV 183
            GCPP  EAL+  ++ LQ K+ +   +
Sbjct: 136 AGCPPRPEALLDALIKLQNKVSKEPTL 162


>gi|220908787|ref|YP_002484098.1| NADH dehydrogenase subunit B [Cyanothece sp. PCC 7425]
 gi|238065000|sp|B8HQR6|NDHK1_CYAP4 RecName: Full=NAD(P)H-quinone oxidoreductase subunit K 1; AltName:
           Full=NAD(P)H dehydrogenase I subunit K 1; AltName:
           Full=NDH-1 subunit K 1; Short=NDH-K 1
 gi|219865398|gb|ACL45737.1| NADH-quinone oxidoreductase, B subunit [Cyanothece sp. PCC 7425]
          Length = 238

 Score =  213 bits (542), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 70/152 (46%), Positives = 104/152 (68%), Gaps = 2/152 (1%)

Query: 27  SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP 86
             +  E+  +  ++TS++ + +W R  SL  + +G ACC +E       R+D +RFG  P
Sbjct: 18  PEVPQEL-QENIILTSLNDVYSWCRLSSLWPLMYGTACCFIEFAAMIGSRFDFDRFGLVP 76

Query: 87  RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRG 145
           R SPRQ+D++I AGT+T KMA AL ++Y+QMPEP+YVI+MG+C   GG +   S + VRG
Sbjct: 77  RCSPRQADLLITAGTITMKMAPALVKLYEQMPEPKYVIAMGACTITGGMFSTDSPTAVRG 136

Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
            D+++PVDIY+PGCPP  EA++  I+ L+KKI
Sbjct: 137 VDKLIPVDIYLPGCPPRPEAIMDAIVKLRKKI 168


>gi|238062212|ref|ZP_04606921.1| NADH-quinone oxidoreductase, B subunit [Micromonospora sp. ATCC
           39149]
 gi|237884023|gb|EEP72851.1| NADH-quinone oxidoreductase, B subunit [Micromonospora sp. ATCC
           39149]
          Length = 225

 Score =  213 bits (542), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 83/148 (56%), Positives = 109/148 (73%), Gaps = 2/148 (1%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89
            E    G L+TSV++LV W+R  S+   TFGLACCA+EMM A  P YD+ R+G    RAS
Sbjct: 4   EEKLPAGVLLTSVEKLVNWSRKSSVWGATFGLACCAIEMMAAGGPHYDMGRWGMEVFRAS 63

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQ+D+MIVAG ++ KMA  LR++YDQM EPR+V+SMG CA+ GG ++  Y++V+G D I
Sbjct: 64  PRQADLMIVAGRVSQKMAPVLRQIYDQMAEPRWVLSMGVCASSGGMFNN-YAIVQGVDHI 122

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKI 177
           VPVD+Y+PGCPP  E LI  IL L++KI
Sbjct: 123 VPVDMYLPGCPPRPEMLIDAILKLREKI 150


>gi|149034570|gb|EDL89307.1| NADH dehydrogenase (ubiquinone) Fe-S protein 7, isoform CRA_c
           [Rattus norvegicus]
          Length = 132

 Score =  213 bits (542), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 106/127 (83%), Positives = 116/127 (91%)

Query: 58  MTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQM 117
           MTFGLACCAVEMM  + PRYD++RFG   RASPRQ+DVMIVAGTLTNKMA ALR+VYDQM
Sbjct: 1   MTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQADVMIVAGTLTNKMAPALRKVYDQM 60

Query: 118 PEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
           PEPRYV+SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQ+KI
Sbjct: 61  PEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQRKI 120

Query: 178 RRVGNVK 184
           +R   +K
Sbjct: 121 KREQKLK 127


>gi|37521948|ref|NP_925325.1| NADH dehydrogenase subunit B [Gloeobacter violaceus PCC 7421]
 gi|81709608|sp|Q7NI05|NDHK2_GLOVI RecName: Full=NAD(P)H-quinone oxidoreductase subunit K 2; AltName:
           Full=NAD(P)H dehydrogenase I subunit K 2; AltName:
           Full=NDH-1 subunit K 2; Short=NDH-K 2
 gi|35212947|dbj|BAC90320.1| NADH dehydrogenase subunit K [Gloeobacter violaceus PCC 7421]
          Length = 249

 Score =  213 bits (542), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 69/156 (44%), Positives = 105/156 (67%), Gaps = 2/156 (1%)

Query: 23  DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82
             +   ++SE+++   ++T+++ L  WAR  S+  + +G ACC +E       R+D +RF
Sbjct: 14  PPERPEVTSELSN-NVVLTTLNDLYNWARLSSVWPLMYGTACCFIEFAGLIGSRFDFDRF 72

Query: 83  GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYS 141
           G  PRASPRQ+D++I AGT+T K A AL  +Y QMPEP+YVI+MG+C   GG +   S +
Sbjct: 73  GLVPRASPRQADLIITAGTITMKFAPALVTLYQQMPEPKYVIAMGACTITGGMFSTDSPT 132

Query: 142 VVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
            VRG D+++PVD+Y+PGCPP  EA+   I+ L+KK+
Sbjct: 133 TVRGVDKLIPVDVYIPGCPPRPEAIFDAIIKLRKKM 168


>gi|302864902|ref|YP_003833539.1| NADH-quinone oxidoreductase subunit B [Micromonospora aurantiaca
           ATCC 27029]
 gi|315501187|ref|YP_004080074.1| NADH-quinone oxidoreductase, b subunit [Micromonospora sp. L5]
 gi|302567761|gb|ADL43963.1| NADH-quinone oxidoreductase, B subunit [Micromonospora aurantiaca
           ATCC 27029]
 gi|315407806|gb|ADU05923.1| NADH-quinone oxidoreductase, B subunit [Micromonospora sp. L5]
          Length = 226

 Score =  213 bits (542), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 82/151 (54%), Positives = 108/151 (71%), Gaps = 2/151 (1%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89
            E    G L+TSV++LV W R  S+   TFGLACCA+EMM A  P YD+ R+G    RAS
Sbjct: 4   EEKLPSGVLLTSVEKLVNWTRKTSVWGATFGLACCAIEMMAAGGPHYDMGRWGMEVFRAS 63

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQ+D+MIVAG ++ KMA  LR++YDQM EPR+VISMG CA+ GG ++  Y++V+G D +
Sbjct: 64  PRQADLMIVAGRVSQKMAPVLRQIYDQMAEPRWVISMGVCASSGGMFNN-YAIVQGVDHV 122

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           VPVD+Y+PGCPP  E LI  +L L++KI   
Sbjct: 123 VPVDMYLPGCPPRPEMLIDAVLKLREKIMHE 153


>gi|290489748|gb|ADD31258.1| NADH-plastoquinone oxidoreductase subunit K protein [Trochodendron
           aralioides]
          Length = 285

 Score =  212 bits (541), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 67/154 (43%), Positives = 101/154 (65%), Gaps = 1/154 (0%)

Query: 28  RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
            +    T    + T+ + L  W+R  SL  + +G +CC +E       R+D +R+G  PR
Sbjct: 67  PLLDRTTQNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 126

Query: 88  ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146
           +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG 
Sbjct: 127 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 186

Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           D+++PV +Y+PGCPP  EA++  I  L+KK+ R 
Sbjct: 187 DKLIPVHVYLPGCPPKPEAVMDAITKLRKKVSRE 220


>gi|158317835|ref|YP_001510343.1| NADH dehydrogenase subunit B [Frankia sp. EAN1pec]
 gi|238065147|sp|A8LCA0|NUOB_FRASN RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|158113240|gb|ABW15437.1| NADH-quinone oxidoreductase, B subunit [Frankia sp. EAN1pec]
          Length = 264

 Score =  212 bits (541), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 81/148 (54%), Positives = 107/148 (72%), Gaps = 2/148 (1%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89
            E    G L+T+V++L  W+R  SL   TFGLACCA+EMM     RYDL RFG    RAS
Sbjct: 4   EEKLPGGVLLTTVEKLANWSRRSSLWPATFGLACCAIEMMSTGAGRYDLSRFGMEVFRAS 63

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQ+D+MIVAG ++ KMA  LR++YDQMPEP++V+SMG CA+ GG ++  Y++V+G D I
Sbjct: 64  PRQADLMIVAGRVSQKMAPVLRQIYDQMPEPKWVLSMGVCASSGGMFNN-YAIVQGVDHI 122

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKI 177
           VPVD+Y+PGCPP  E L+  I+ L +KI
Sbjct: 123 VPVDMYLPGCPPRPEMLMDAIVKLHEKI 150


>gi|222824437|ref|YP_002576011.1| NADH-quinone oxidoreductase, B subunit [Campylobacter lari RM2100]
 gi|222539658|gb|ACM64759.1| NADH-quinone oxidoreductase, B subunit [Campylobacter lari RM2100]
          Length = 165

 Score =  212 bits (541), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 83/154 (53%), Positives = 115/154 (74%), Gaps = 1/154 (0%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP 90
            ++ +   ++T+VD+LV W R+ SL  +++GLACCA+EMM A   RYD +RFG   RASP
Sbjct: 5   QKMNNAPVVLTTVDKLVQWGRSNSLWALSYGLACCAIEMMAAGGARYDFDRFGTIFRASP 64

Query: 91  RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150
           RQS+VMI+AGTL+ K A   RR+YDQMP+P++VISMGSCAN GG ++ +YS V+G DRI+
Sbjct: 65  RQSEVMIIAGTLSKKHAEFTRRLYDQMPDPKWVISMGSCANTGGMFN-TYSTVQGVDRII 123

Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           PVDIYVPGC P  E   + +++LQK+IR+    +
Sbjct: 124 PVDIYVPGCAPRPETFQFALMILQKRIRKEKASR 157


>gi|162457344|ref|YP_001619711.1| NADH dehydrogenase (ubiquinone) [Sorangium cellulosum 'So ce 56']
 gi|238065042|sp|A9G9S9|NUOB2_SORC5 RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName:
           Full=NADH dehydrogenase I subunit B 2; AltName:
           Full=NDH-1 subunit B 2
 gi|161167926|emb|CAN99231.1| NADH dehydrogenase (ubiquinone) [Sorangium cellulosum 'So ce 56']
          Length = 182

 Score =  212 bits (541), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 90/156 (57%), Positives = 117/156 (75%), Gaps = 4/156 (2%)

Query: 32  EITHKGFLVTSVDQ----LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
           E    G + TSVDQ    L+ W R+ S+ +M FGLACCA+E+MQ   PR DLERFG APR
Sbjct: 19  ESDGGGVITTSVDQTVNWLLNWGRSNSVWYMLFGLACCAIELMQTGGPRGDLERFGAAPR 78

Query: 88  ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCD 147
            SPR SD+ I+AGTLT KMA+ ++R+YDQM EPR+VISMGSC+N GG + Y+YSV +G D
Sbjct: 79  PSPRSSDLFIIAGTLTYKMATRVKRLYDQMSEPRFVISMGSCSNCGGLFQYAYSVCKGVD 138

Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           +I+PVD+YVPGCPP  EAL+ G+L +Q+KI+    +
Sbjct: 139 QIIPVDVYVPGCPPRPEALLEGLLKIQEKIKSERAL 174


>gi|76801790|ref|YP_326798.1| NADH dehydrogenase-like complex, subunit B [Natronomonas pharaonis
           DSM 2160]
 gi|76557655|emb|CAI49238.1| NADH dehydrogenase-like complex, subunit B [Natronomonas pharaonis
           DSM 2160]
          Length = 227

 Score =  212 bits (541), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 77/183 (42%), Positives = 115/183 (62%), Gaps = 1/183 (0%)

Query: 1   MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTF 60
           M    ++    + Q+       D   S++        F++T  D+ + W R  S+  + F
Sbjct: 1   MSSEKLHDTTSTQQARMGDGVDDRFNSKLREAFGSTPFILTKFDKFMNWVRGNSMFMLQF 60

Query: 61  GLACCAVEMMQASMPRYDLERFGF-APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119
           G+ACC++EM+     ++DL+RFG   PRASPRQ+DV+IV GT+ +K A  ++RVYDQMPE
Sbjct: 61  GIACCSIEMIHTYAIKHDLDRFGAGVPRASPRQADVIIVPGTIVSKFAPRMKRVYDQMPE 120

Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           P++V+ MGSC   GG +   Y+V++G + ++PVDI+VPGCPP  EALIYGI  LQ++IR 
Sbjct: 121 PKFVVGMGSCTISGGPFQEGYNVIKGAEEVIPVDIHVPGCPPRPEALIYGIAKLQERIRN 180

Query: 180 VGN 182
              
Sbjct: 181 GET 183


>gi|206602059|gb|EDZ38541.1| NADH dehydrogenase (ubiquinone), B subunit [Leptospirillum sp.
           Group II '5-way CG']
          Length = 178

 Score =  212 bits (541), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 90/146 (61%), Positives = 113/146 (77%), Gaps = 2/146 (1%)

Query: 39  LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APRASPRQSDVMI 97
           L  +V++++ W+R  +L  MTFGLACCA+EMM A   R+D++RFG    RASPRQSD+MI
Sbjct: 18  LQDAVNEMLNWSRKSALWPMTFGLACCAIEMMGAVASRFDIDRFGAGVFRASPRQSDLMI 77

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGTLT KMA  +RR+YDQMPEPRYVI+MGSCA  G  Y  SYSVV+G DRI+PVD+YVP
Sbjct: 78  VAGTLTRKMAPVVRRIYDQMPEPRYVIAMGSCATSGNIY-DSYSVVQGVDRIIPVDVYVP 136

Query: 158 GCPPTAEALIYGILLLQKKIRRVGNV 183
           GCPP  EAL+ G++ LQ+KI +   V
Sbjct: 137 GCPPRPEALLDGLMKLQEKIMKDRPV 162


>gi|75286712|sp|Q5SD03|NDHK_HUPLU RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
 gi|50659999|gb|AAT80721.1| NADH-plastoquinone oxidoreductase subunit K [Huperzia lucidula]
          Length = 263

 Score =  212 bits (541), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 69/155 (44%), Positives = 103/155 (66%), Gaps = 1/155 (0%)

Query: 27  SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP 86
           S +  + T    ++T+ +    WAR  SL  + +G +CC +E       R D +R+G  P
Sbjct: 27  SSLLDKTTSNSIVLTTFNDFSNWARLSSLWPLLYGTSCCFIESASLIGSRSDSDRYGLVP 86

Query: 87  RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRG 145
           R+SPRQ+D++I AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG
Sbjct: 87  RSSPRQADLVITAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRG 146

Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
            D+ +PVD+Y+PGCPP  EA+I  I+ L+K++ + 
Sbjct: 147 VDKPIPVDVYLPGCPPKPEAIIDAIVKLRKRVAQE 181


>gi|269128612|ref|YP_003301982.1| NADH-quinone oxidoreductase subunit B [Thermomonospora curvata DSM
           43183]
 gi|268313570|gb|ACY99944.1| NADH-quinone oxidoreductase, B subunit [Thermomonospora curvata DSM
           43183]
          Length = 183

 Score =  212 bits (541), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 82/152 (53%), Positives = 107/152 (70%), Gaps = 2/152 (1%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR-AS 89
            E    GFL+T+V+Q+V WAR  S    TFGLACCA+EMM A  PR+D  R+G     A+
Sbjct: 4   EEKLPSGFLLTTVEQVVGWARRSSTWPATFGLACCAIEMMAAGDPRHDFSRWGMERASAT 63

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQ+D+MIVAG ++ KMA  LR++YDQM EP++VI+MG CA+ GG ++  Y+VV+G D I
Sbjct: 64  PRQADLMIVAGRVSQKMAPVLRQIYDQMTEPKWVIAMGVCASSGGMFNN-YAVVQGVDHI 122

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
           VPVDIY+PGCPP  E LI  I+ L  KI+   
Sbjct: 123 VPVDIYLPGCPPRPEMLIDAIVKLHDKIQNTK 154


>gi|283953809|ref|ZP_06371340.1| NADH-quinone oxidoreductase, B subunit [Campylobacter jejuni subsp.
           jejuni 414]
 gi|283794850|gb|EFC33588.1| NADH-quinone oxidoreductase, B subunit [Campylobacter jejuni subsp.
           jejuni 414]
          Length = 167

 Score =  212 bits (541), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 83/147 (56%), Positives = 111/147 (75%), Gaps = 1/147 (0%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
            ++TSVD+LV W R+ SL  +++GLACCA+EMM A   RYD +RFG   RASPR S+VMI
Sbjct: 14  VVLTSVDKLVQWGRSNSLWALSYGLACCAIEMMAAGGSRYDFDRFGTIFRASPRHSEVMI 73

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           +AGTL  K A   RR+YDQMP+P++V+SMGSCAN GG ++ +YS V+G DRI+PVDIYVP
Sbjct: 74  IAGTLCKKHAEFTRRLYDQMPDPKWVVSMGSCANTGGMFN-TYSTVQGVDRIIPVDIYVP 132

Query: 158 GCPPTAEALIYGILLLQKKIRRVGNVK 184
           GC P  E+  + +++LQKKIR+    +
Sbjct: 133 GCAPRPESFQFALMILQKKIRKEKASR 159


>gi|220910063|ref|YP_002485374.1| NADH dehydrogenase subunit B [Cyanothece sp. PCC 7425]
 gi|238065001|sp|B8HLE8|NDHK2_CYAP4 RecName: Full=NAD(P)H-quinone oxidoreductase subunit K 2; AltName:
           Full=NAD(P)H dehydrogenase I subunit K 2; AltName:
           Full=NDH-1 subunit K 2; Short=NDH-K 2
 gi|219866674|gb|ACL47013.1| NADH-quinone oxidoreductase, B subunit [Cyanothece sp. PCC 7425]
          Length = 259

 Score =  212 bits (541), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 70/158 (44%), Positives = 107/158 (67%), Gaps = 2/158 (1%)

Query: 21  KVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLE 80
           +     + +  E++    ++TS+D +  WAR  S+  + +G ACC +E       R+D+E
Sbjct: 10  RNPISSAEVPPELSE-NIILTSLDDIYNWARISSIYPLMYGTACCFIEFAAMIASRFDME 68

Query: 81  RFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YS 139
           RFG  PRASPRQ+D++I+AGTLT +MA   RR+YDQMPEP+YVI+MG+C   GG +   S
Sbjct: 69  RFGMFPRASPRQADLIILAGTLTMQMAVPTRRLYDQMPEPKYVIAMGACMITGGMFSADS 128

Query: 140 YSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
            + +RG D+++P+D+Y+PGCPP  EA++  +  L+KKI
Sbjct: 129 PTALRGADKLLPIDVYIPGCPPRPEAILDAVTKLRKKI 166


>gi|328884313|emb|CCA57552.1| NADH-ubiquinone oxidoreductase chain B [Streptomyces venezuelae
           ATCC 10712]
          Length = 184

 Score =  212 bits (541), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 83/149 (55%), Positives = 105/149 (70%), Gaps = 2/149 (1%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89
            E    GFL+T+V+Q   W R  S+   TFGLACCA+EMM     RYDL RFG    R S
Sbjct: 4   EEKLPSGFLLTTVEQAAGWVRKASVFPATFGLACCAIEMMTTGAGRYDLARFGMEVFRGS 63

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQ+D+MIVAG ++ KMA  LR+VYDQMP P++VISMG CA+ GG ++  Y++V+G D I
Sbjct: 64  PRQADLMIVAGRVSQKMAPVLRQVYDQMPNPKWVISMGVCASSGGMFNN-YAIVQGVDHI 122

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           VPVDIY+PGCPP  E L+  IL L +KI+
Sbjct: 123 VPVDIYLPGCPPRPEMLLDAILKLHQKIQ 151


>gi|150375773|ref|YP_001312369.1| NADH dehydrogenase subunit B [Sinorhizobium medicae WSM419]
 gi|150030320|gb|ABR62436.1| NADH-quinone oxidoreductase, B subunit [Sinorhizobium medicae
           WSM419]
          Length = 167

 Score =  212 bits (541), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 81/148 (54%), Positives = 112/148 (75%), Gaps = 1/148 (0%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP 90
           ++      L T+ + +++W+R  +L   TFG+ACCA+EM+ A   RYDL+RFG   R SP
Sbjct: 5   NDAIRDSVLFTTAESIISWSRRSALWPETFGIACCAIEMISAGCARYDLDRFGVVFRPSP 64

Query: 91  RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150
           RQSDVMI+AGT+T K A  +RR+YDQMPEPR+VI+MG+CA  GG Y+ +Y+VV+G +  V
Sbjct: 65  RQSDVMIIAGTVTRKFAPVVRRLYDQMPEPRWVIAMGTCAISGGVYN-TYAVVQGSETFV 123

Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIR 178
           PVD++VPGCPP  EAL++G LLLQ+KI+
Sbjct: 124 PVDVHVPGCPPRPEALMHGFLLLQEKIK 151


>gi|154795234|ref|YP_209525.2| NADH dehydrogenase subunit K [Huperzia lucidula]
          Length = 242

 Score =  212 bits (540), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 69/155 (44%), Positives = 103/155 (66%), Gaps = 1/155 (0%)

Query: 27  SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP 86
           S +  + T    ++T+ +    WAR  SL  + +G +CC +E       R D +R+G  P
Sbjct: 6   SSLLDKTTSNSIVLTTFNDFSNWARLSSLWPLLYGTSCCFIESASLIGSRSDSDRYGLVP 65

Query: 87  RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRG 145
           R+SPRQ+D++I AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG
Sbjct: 66  RSSPRQADLVITAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRG 125

Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
            D+ +PVD+Y+PGCPP  EA+I  I+ L+K++ + 
Sbjct: 126 VDKPIPVDVYLPGCPPKPEAIIDAIVKLRKRVAQE 160


>gi|289641426|ref|ZP_06473590.1| NADH-quinone oxidoreductase, B subunit [Frankia symbiont of Datisca
           glomerata]
 gi|289508762|gb|EFD29697.1| NADH-quinone oxidoreductase, B subunit [Frankia symbiont of Datisca
           glomerata]
          Length = 267

 Score =  212 bits (540), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 81/148 (54%), Positives = 107/148 (72%), Gaps = 2/148 (1%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89
            E    G L+T+V+++  W+R  SL   TFGLACCA+EMM     RYDL RFG    RAS
Sbjct: 4   EEKLPGGLLLTTVEKMANWSRRSSLWPATFGLACCAIEMMSTGAGRYDLARFGMEVFRAS 63

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQ+D+MIVAG ++ KMA  LR++YDQMPEP++V+SMG CA+ GG ++  Y++V+G D I
Sbjct: 64  PRQADLMIVAGRVSQKMAPVLRQIYDQMPEPKWVLSMGVCASSGGMFNN-YAIVQGVDHI 122

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKI 177
           VPVD+Y+PGCPP  E L+  IL L +KI
Sbjct: 123 VPVDMYLPGCPPRPEMLMDAILKLHEKI 150


>gi|238927268|ref|ZP_04659028.1| proton-translocating NADH-ubiquinone oxidoreductase, subunit B
           [Selenomonas flueggei ATCC 43531]
 gi|238884855|gb|EEQ48493.1| proton-translocating NADH-ubiquinone oxidoreductase, subunit B
           [Selenomonas flueggei ATCC 43531]
          Length = 179

 Score =  212 bits (540), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 79/161 (49%), Positives = 110/161 (68%), Gaps = 1/161 (0%)

Query: 25  DFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF 84
           + +    E   +   V  +D+L+ WA   S+  ++ GLACCA+EMM  +  R+DL RFG+
Sbjct: 2   EIAERVPESLRENVFVVKLDELLRWAHANSIWPLSSGLACCAIEMMTTATARFDLARFGY 61

Query: 85  A-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVV 143
              R  PRQ+D+ IVAGTLT KMA A+ R+Y++MPEP+YVI+MG+CA  GG +  SYSVV
Sbjct: 62  EVFRPCPRQADLFIVAGTLTWKMAPAVVRLYEEMPEPKYVIAMGACAIAGGPFADSYSVV 121

Query: 144 RGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
            G D ++PVD+Y+PGCPP  EALI G+L L++KI     V+
Sbjct: 122 SGVDELLPVDVYIPGCPPRPEALIDGMLKLREKILHPERVR 162


>gi|182436776|ref|YP_001824495.1| NADH dehydrogenase subunit B [Streptomyces griseus subsp. griseus
           NBRC 13350]
 gi|326777371|ref|ZP_08236636.1| NAD(P)H-quinone oxidoreductase subunit K [Streptomyces cf. griseus
           XylebKG-1]
 gi|238065022|sp|B1W518|NUOB1_STRGG RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName:
           Full=NADH dehydrogenase I subunit B 1; AltName:
           Full=NDH-1 subunit B 1
 gi|178465292|dbj|BAG19812.1| putative NADH dehydrogenase chain B [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|326657704|gb|EGE42550.1| NAD(P)H-quinone oxidoreductase subunit K [Streptomyces cf. griseus
           XylebKG-1]
          Length = 184

 Score =  212 bits (540), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 82/149 (55%), Positives = 105/149 (70%), Gaps = 2/149 (1%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89
            E    GF++T+V+Q   W R  S+   TFGLACCA+EMM     RYDL RFG    R S
Sbjct: 4   EEKLPSGFVLTTVEQAAGWVRKSSVFPATFGLACCAIEMMTTGAGRYDLARFGMEVFRGS 63

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQ+D+MIVAG ++ KMA  LR+VYDQMP P++VISMG CA+ GG ++  Y++V+G D I
Sbjct: 64  PRQADLMIVAGRVSQKMAPVLRQVYDQMPNPKWVISMGVCASSGGMFNN-YAIVQGVDHI 122

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           VPVDIY+PGCPP  E L+  IL L +KI+
Sbjct: 123 VPVDIYLPGCPPRPEMLLDAILKLHQKIQ 151


>gi|131324|sp|P15602|NDUS7_PARTE RecName: Full=NADH-ubiquinone oxidoreductase 20 kDa subunit
 gi|578753|emb|CAA34045.1| unnamed protein product [Paramecium aurelia]
          Length = 156

 Score =  212 bits (539), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 94/152 (61%), Positives = 121/152 (79%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           I    FL  S + L++WAR GS   +TFGLACCA+EMM A++ RYD +RFG   RA+PRQ
Sbjct: 2   ILKADFLKLSANNLISWARQGSFWPLTFGLACCALEMMHATVSRYDFDRFGVIFRATPRQ 61

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           +D++IVAGT+TNKMA ALRR+YDQ  +P++V+SMGSCANGGGYYHYSY+VV+GCD+I+PV
Sbjct: 62  ADLIIVAGTVTNKMAPALRRLYDQTADPKWVLSMGSCANGGGYYHYSYAVVKGCDKIIPV 121

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           D+  P CPPTAEAL +G+L LQK + +  N K
Sbjct: 122 DMLCPRCPPTAEALFFGVLQLQKTLMKTINEK 153


>gi|295837124|ref|ZP_06824057.1| NADH-quinone oxidoreductase, B subunit [Streptomyces sp. SPB74]
 gi|318057842|ref|ZP_07976565.1| NADH dehydrogenase subunit B [Streptomyces sp. SA3_actG]
 gi|318078940|ref|ZP_07986272.1| NADH dehydrogenase subunit B [Streptomyces sp. SA3_actF]
 gi|333025118|ref|ZP_08453182.1| putative NADH dehydrogenase subunit B [Streptomyces sp. Tu6071]
 gi|197697234|gb|EDY44167.1| NADH-quinone oxidoreductase, B subunit [Streptomyces sp. SPB74]
 gi|332744970|gb|EGJ75411.1| putative NADH dehydrogenase subunit B [Streptomyces sp. Tu6071]
          Length = 184

 Score =  212 bits (539), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 82/152 (53%), Positives = 105/152 (69%), Gaps = 2/152 (1%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89
            E    GFL+T+V+Q   W R  S+   TFGLACCA+EMM     RYDL RFG    R S
Sbjct: 4   EEKLPSGFLLTTVEQAAGWVRKSSMFPATFGLACCAIEMMTTGAGRYDLARFGMEVFRGS 63

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQ+D+MIVAG ++ KMA  LR+VYDQMP P++VISMG CA+ GG ++  Y++V+G D +
Sbjct: 64  PRQADLMIVAGRVSQKMAPVLRQVYDQMPNPKWVISMGVCASSGGMFNN-YAIVQGVDHV 122

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
           VPVDIY+PGCPP  E LI  IL L +K++   
Sbjct: 123 VPVDIYLPGCPPRPEMLIDAILKLHQKVQGTK 154


>gi|215428603|ref|ZP_03426522.1| NADH dehydrogenase subunit C [Mycobacterium tuberculosis T92]
          Length = 420

 Score =  211 bits (538), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 74/151 (49%), Positives = 110/151 (72%), Gaps = 2/151 (1%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89
            E    G L+++V+++  + R  SL   TFGLACCA+EMM  + PR+D+ RFG     A+
Sbjct: 4   EEQLPGGILLSTVEKVAGYVRKNSLWPATFGLACCAIEMMATAGPRFDIARFGMERFSAT 63

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQ+D+MIVAG ++ KMA  LR++YDQM EP++V++MG CA+ GG ++  Y++V+G D +
Sbjct: 64  PRQADLMIVAGRVSQKMAPVLRQIYDQMAEPKWVLAMGVCASSGGMFNN-YAIVQGVDHV 122

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           VPVDIY+PGCPP  E L++ IL L +KI+++
Sbjct: 123 VPVDIYLPGCPPRPEMLLHAILKLHEKIQQM 153


>gi|21222946|ref|NP_628725.1| NADH dehydrogenase subunit B [Streptomyces coelicolor A3(2)]
 gi|256785940|ref|ZP_05524371.1| NADH dehydrogenase subunit B [Streptomyces lividans TK24]
 gi|329935996|ref|ZP_08285796.1| NADH dehydrogenase subunit B [Streptomyces griseoaurantiacus M045]
 gi|81625663|sp|Q9XAQ5|NUOB1_STRCO RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName:
           Full=NADH dehydrogenase I subunit B 1; AltName:
           Full=NDH-1 subunit B 1
 gi|5042276|emb|CAB44530.1| NuoB, NADH dehydrogenase subunit [Streptomyces coelicolor A3(2)]
 gi|329304474|gb|EGG48352.1| NADH dehydrogenase subunit B [Streptomyces griseoaurantiacus M045]
          Length = 184

 Score =  211 bits (538), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 82/149 (55%), Positives = 105/149 (70%), Gaps = 2/149 (1%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89
            E    GFL+T+V+Q   W R  S+   TFGLACCA+EMM     RYDL RFG    R S
Sbjct: 4   EEKLPSGFLLTTVEQAAGWVRKSSVFPATFGLACCAIEMMTTGAGRYDLARFGMEVFRGS 63

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQ+D+MIVAG ++ KMA  LR+VYDQMP P++VISMG CA+ GG ++  Y++V+G D +
Sbjct: 64  PRQADLMIVAGRVSQKMAPVLRQVYDQMPNPKWVISMGVCASSGGMFNN-YAIVQGVDHV 122

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           VPVDIY+PGCPP  E L+  IL L +KI+
Sbjct: 123 VPVDIYLPGCPPRPEMLMDAILKLHQKIQ 151


>gi|302559106|ref|ZP_07311448.1| NADH-quinone oxidoreductase, B subunit [Streptomyces griseoflavus
           Tu4000]
 gi|302476724|gb|EFL39817.1| NADH-quinone oxidoreductase, B subunit [Streptomyces griseoflavus
           Tu4000]
          Length = 184

 Score =  211 bits (538), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 82/149 (55%), Positives = 105/149 (70%), Gaps = 2/149 (1%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89
            E    GFL+T+V+Q   W R  S+   TFGLACCA+EMM     RYDL RFG    R S
Sbjct: 4   EEKLPSGFLLTTVEQAAGWVRKSSMFPATFGLACCAIEMMTTGAGRYDLARFGMEVFRGS 63

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQ+D+MIVAG ++ KMA  LR+VYDQMP P++VISMG CA+ GG ++  Y++V+G D +
Sbjct: 64  PRQADLMIVAGRVSQKMAPVLRQVYDQMPNPKWVISMGVCASSGGMFNN-YAIVQGVDHV 122

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           VPVDIY+PGCPP  E L+  IL L +KI+
Sbjct: 123 VPVDIYLPGCPPRPEMLMDAILKLHQKIQ 151


>gi|72163093|ref|YP_290750.1| NADH dehydrogenase subunit B [Thermobifida fusca YX]
 gi|123628754|sp|Q47LE5|NUOB_THEFY RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|71916825|gb|AAZ56727.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit [Thermobifida fusca
           YX]
          Length = 185

 Score =  211 bits (538), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 78/152 (51%), Positives = 106/152 (69%), Gaps = 2/152 (1%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89
            E    G L+T+V+Q+V + R  S+   TFGLACCA+EMM A  PR+D+ RFG     A+
Sbjct: 4   EEKLPSGVLLTTVEQIVGFVRKTSMWPATFGLACCAIEMMAAGGPRFDIARFGMERFSAT 63

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQ+D+MIVAG ++ KMA  LR +YDQM EP++VI+MG CA+ GG ++  Y++V+G D I
Sbjct: 64  PRQADLMIVAGRVSQKMAPVLRTIYDQMAEPKWVIAMGVCASSGGMFNN-YAIVQGVDHI 122

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
           VPVDIY+PGCPP  E L+  IL L  K++   
Sbjct: 123 VPVDIYLPGCPPRPEMLLDAILKLHDKVQNTK 154


>gi|212550775|ref|YP_002309092.1| NADH dehydrogenase I subunit B [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
 gi|238065056|sp|B6YR59|NUOB_AZOPC RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|212549013|dbj|BAG83681.1| NADH dehydrogenase I subunit B [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
          Length = 191

 Score =  211 bits (538), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 67/161 (41%), Positives = 101/161 (62%), Gaps = 3/161 (1%)

Query: 21  KVDADFSRISSEI--THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78
           + +        E+        +  ++ L+ W R+ S+  +TF  +CC +E M     RYD
Sbjct: 7   RDNEYLEEYLKELWGNGANIAIAKLNDLINWGRSNSVWPLTFATSCCGIEFMCLGAARYD 66

Query: 79  LERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137
             RFG+   R SPRQ+DV+   GT+ +KMA  L+R+YDQM EP+YVI++GSCA  GG + 
Sbjct: 67  FARFGWEVTRNSPRQADVVFCCGTIVHKMAPVLKRLYDQMSEPKYVIALGSCAISGGPFK 126

Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
            SY  + G D+I+PVD+Y+PGCPP  +A+IYG++ L +KI+
Sbjct: 127 SSYHTIMGIDKIIPVDVYIPGCPPRPDAMIYGMIQLARKIK 167


>gi|29831381|ref|NP_826015.1| NADH dehydrogenase subunit B [Streptomyces avermitilis MA-4680]
 gi|81718124|sp|Q82DY0|NUOB1_STRAW RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName:
           Full=NADH dehydrogenase I subunit B 1; AltName:
           Full=NDH-1 subunit B 1
 gi|29608496|dbj|BAC72550.1| putative NADH dehydrogenase I chain B (complex I) [Streptomyces
           avermitilis MA-4680]
          Length = 184

 Score =  211 bits (538), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 84/149 (56%), Positives = 105/149 (70%), Gaps = 2/149 (1%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89
            E    GFL+T+V+Q   W R  S+   TFGLACCA+EMM     RYDL RFG    R S
Sbjct: 4   EEKLPSGFLLTTVEQAAGWVRKASVFPATFGLACCAIEMMTTGAGRYDLARFGMEVFRGS 63

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQ+D+MIVAG ++ KMA  LR+VYDQMP P++VISMG CA+ GG ++  Y++V+G D I
Sbjct: 64  PRQADLMIVAGRVSQKMAPVLRQVYDQMPNPKWVISMGVCASSGGMFNN-YAIVQGVDHI 122

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           VPVDIY+PGCPP  E LI  IL L +KI+
Sbjct: 123 VPVDIYLPGCPPRPEMLIDAILKLHQKIQ 151


>gi|320009203|gb|ADW04053.1| NADH-quinone oxidoreductase, B subunit [Streptomyces flavogriseus
           ATCC 33331]
          Length = 184

 Score =  211 bits (538), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 83/149 (55%), Positives = 105/149 (70%), Gaps = 2/149 (1%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89
            E    GF++T+V+Q   W R  S+   TFGLACCA+EMM     RYDL RFG    R S
Sbjct: 4   EEKLPSGFVLTTVEQAAGWVRKSSVFPATFGLACCAIEMMTTGAGRYDLARFGMEVFRGS 63

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQ+D+MIVAG ++ KMA  LR+VYDQMP P++VISMG CA+ GG ++  Y++V+G D I
Sbjct: 64  PRQADLMIVAGRVSQKMAPVLRQVYDQMPSPKWVISMGVCASSGGMFNN-YAIVQGVDHI 122

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           VPVDIY+PGCPP  E LI  IL L +KI+
Sbjct: 123 VPVDIYLPGCPPRPEMLIDAILKLHQKIQ 151


>gi|297192787|ref|ZP_06910185.1| NADH dehydrogenase subunit B (NuoB) [Streptomyces pristinaespiralis
           ATCC 25486]
 gi|197721026|gb|EDY64934.1| NADH dehydrogenase subunit B (NuoB) [Streptomyces pristinaespiralis
           ATCC 25486]
          Length = 184

 Score =  211 bits (538), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 83/149 (55%), Positives = 105/149 (70%), Gaps = 2/149 (1%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89
            E    GFL+T+V+Q   W R  S+   TFGLACCA+EMM     RYDL RFG    R S
Sbjct: 4   EEKLPSGFLLTTVEQAAGWVRKSSVFPATFGLACCAIEMMTTGAGRYDLARFGMEVFRGS 63

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQ+D+MIVAG ++ KMA  LR+VYDQMP P++VISMG CA+ GG ++  Y++V+G D I
Sbjct: 64  PRQADLMIVAGRVSQKMAPVLRQVYDQMPNPKWVISMGVCASSGGMFNN-YAIVQGVDHI 122

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           VPVDIY+PGCPP  E L+  IL L +KI+
Sbjct: 123 VPVDIYLPGCPPRPEMLMDAILKLHQKIQ 151


>gi|68565803|sp|Q85FL6|NDHK_ADICA RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit K; AltName: Full=NADH-plastoquinone
           oxidoreductase subunit K
 gi|48476003|gb|AAP29396.2| NADH dehydrogenase subunit K [Adiantum capillus-veneris]
          Length = 250

 Score =  211 bits (538), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 67/149 (44%), Positives = 98/149 (65%), Gaps = 1/149 (0%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
                 + S+     W+R  SL  + +G +CC +E       R+D +R+G  PR+SPRQ+
Sbjct: 37  MSDSIFMASISDFSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 96

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGCDRIVPV 152
           D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++PV
Sbjct: 97  DLIVTAGTITMKMAPSLIRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 156

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVG 181
           DIY+PGCPP  EA++  +  L+KKI R  
Sbjct: 157 DIYLPGCPPKPEAIMDAVTKLRKKIARNR 185


>gi|298373133|ref|ZP_06983123.1| NADH dehydrogenase I, B subunit [Bacteroidetes oral taxon 274 str.
           F0058]
 gi|298276037|gb|EFI17588.1| NADH dehydrogenase I, B subunit [Bacteroidetes oral taxon 274 str.
           F0058]
          Length = 204

 Score =  211 bits (538), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 69/161 (42%), Positives = 102/161 (63%), Gaps = 3/161 (1%)

Query: 21  KVDADFSRISSEITHKGF--LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78
           K +    +   ++   G    +  +D ++ W R+ S+  +TF  +CC +E M     R+D
Sbjct: 17  KDNEYLEQYVEQLREGGVNVAIAKLDDIINWGRSNSVWPLTFATSCCGIEFMSLGAARFD 76

Query: 79  LERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137
             RFG+   R SPRQ+DV+   GT+ +KMA  L+R+YDQM EP+YVI++G CA  GG + 
Sbjct: 77  FSRFGWEVTRNSPRQADVVFCFGTIVHKMAPVLKRLYDQMSEPKYVIAVGGCAISGGPFK 136

Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
            SY  V G D+I+PVD+YVPGCPP+  A+IYG+L L +KI+
Sbjct: 137 KSYHTVMGIDQIIPVDVYVPGCPPSPNAIIYGMLQLSRKIK 177


>gi|258651217|ref|YP_003200373.1| NADH dehydrogenase subunit B [Nakamurella multipartita DSM 44233]
 gi|258554442|gb|ACV77384.1| NADH-quinone oxidoreductase, B subunit [Nakamurella multipartita
           DSM 44233]
          Length = 199

 Score =  211 bits (538), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 84/148 (56%), Positives = 106/148 (71%), Gaps = 2/148 (1%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89
            E    G L+TSV++LV W R  SL   TFGLACCA+EMM    PRYDL RFG    RAS
Sbjct: 4   EEKLPNGVLLTSVEKLVNWTRKASLFPATFGLACCAIEMMTTGAPRYDLGRFGMEVFRAS 63

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQ+D+MIVAG ++ KMA  LR++YDQM EP++V+SMG CA+ GG ++  Y++V+G D +
Sbjct: 64  PRQADLMIVAGRVSQKMAPVLRQIYDQMAEPKWVLSMGVCASSGGMFNN-YAIVQGVDHV 122

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKI 177
           VPVD+Y+PGCPP  E LI  IL L  KI
Sbjct: 123 VPVDMYLPGCPPRPEMLIDAILKLHAKI 150


>gi|163783891|ref|ZP_02178866.1| NADH dehydrogenase I chain B [Hydrogenivirga sp. 128-5-R1-1]
 gi|159880835|gb|EDP74364.1| NADH dehydrogenase I chain B [Hydrogenivirga sp. 128-5-R1-1]
          Length = 172

 Score =  211 bits (537), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 79/152 (51%), Positives = 114/152 (75%), Gaps = 1/152 (0%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           + + G ++T+ +++++W R  SL  ++ GLACCA+EMM  +  R+D +R G   R SPRQ
Sbjct: 4   MNNNGIILTTAEEVLSWGRRNSLWPVSIGLACCAIEMMHTAASRFDTDRLGIIFRGSPRQ 63

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           SDV+IVAGT+ NK+A  L+ +YDQMP+P++VISMG CA+ GG +  +YS ++G DRI+PV
Sbjct: 64  SDVLIVAGTVVNKVAPMLKLIYDQMPDPKWVISMGGCASAGGPFP-TYSTLQGVDRIIPV 122

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           D+YVPGCPPT +AL++GIL LQKKI+     K
Sbjct: 123 DVYVPGCPPTPQALLWGILELQKKIKAKREGK 154


>gi|304437258|ref|ZP_07397218.1| NADH-quinone oxidoreductase subunit B [Selenomonas sp. oral taxon
           149 str. 67H29BP]
 gi|304369750|gb|EFM23415.1| NADH-quinone oxidoreductase subunit B [Selenomonas sp. oral taxon
           149 str. 67H29BP]
          Length = 179

 Score =  211 bits (537), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 79/161 (49%), Positives = 110/161 (68%), Gaps = 1/161 (0%)

Query: 25  DFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF 84
           + +    E   +   V  +D+L+ WA   S+  ++ GLACCA+EMM  +  R+DL RFG+
Sbjct: 2   EIAERVPECLRENVFVVKLDELLRWAHANSVWPLSSGLACCAIEMMTTATARFDLARFGY 61

Query: 85  A-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVV 143
              R  PRQ+D+ IVAGTLT KMA A+ R+Y++MPEP+YVI+MG+CA  GG +  SYSVV
Sbjct: 62  EVFRPCPRQADLFIVAGTLTWKMAPAVVRLYEEMPEPKYVIAMGACAIAGGPFADSYSVV 121

Query: 144 RGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
            G D ++PVD+Y+PGCPP  EALI G+L L++KI     V+
Sbjct: 122 SGVDELLPVDVYIPGCPPRPEALIDGMLKLREKILHPERVR 162


>gi|288917184|ref|ZP_06411553.1| NADH-quinone oxidoreductase, B subunit [Frankia sp. EUN1f]
 gi|288351375|gb|EFC85583.1| NADH-quinone oxidoreductase, B subunit [Frankia sp. EUN1f]
          Length = 264

 Score =  211 bits (537), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 81/148 (54%), Positives = 106/148 (71%), Gaps = 2/148 (1%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89
            E    G L+T+V+ L  W+R  SL   TFGLACCA+EMM     RYDL RFG    RAS
Sbjct: 4   EEKLPGGVLLTTVEMLANWSRRSSLWPATFGLACCAIEMMSTGAGRYDLSRFGMEVFRAS 63

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQ+D+MIVAG ++ KMA  LR++YDQMPEP++V+SMG CA+ GG ++  Y++V+G D I
Sbjct: 64  PRQADLMIVAGRVSQKMAPVLRQIYDQMPEPKWVLSMGVCASSGGMFNN-YAIVQGVDHI 122

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKI 177
           VPVD+Y+PGCPP  E L+  I+ L +KI
Sbjct: 123 VPVDMYLPGCPPRPEMLMDAIIKLHEKI 150


>gi|8928600|ref|NP_059405.1| NADH dehydrogenase subunit 10 [Paramecium aurelia]
          Length = 154

 Score =  211 bits (537), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 93/147 (63%), Positives = 120/147 (81%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           FL  S + L++WAR GS   +TFGLACCA+EMM A++ RYD +RFG   RA+PRQ+D++I
Sbjct: 5   FLKLSANNLISWARQGSFWPLTFGLACCALEMMHATVSRYDFDRFGVIFRATPRQADLII 64

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGT+TNKMA ALRR+YDQ  +P++V+SMGSCANGGGYYHYSY+VV+GCD+I+PVD+  P
Sbjct: 65  VAGTVTNKMAPALRRLYDQTADPKWVLSMGSCANGGGYYHYSYAVVKGCDKIIPVDMLCP 124

Query: 158 GCPPTAEALIYGILLLQKKIRRVGNVK 184
            CPPTAEAL +G+L LQK + +  N K
Sbjct: 125 RCPPTAEALFFGVLQLQKTLMKTINEK 151


>gi|239943528|ref|ZP_04695465.1| putative NADH dehydrogenase chain B [Streptomyces roseosporus NRRL
           15998]
 gi|239989982|ref|ZP_04710646.1| putative NADH dehydrogenase chain B [Streptomyces roseosporus NRRL
           11379]
          Length = 226

 Score =  210 bits (536), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 85/182 (46%), Positives = 112/182 (61%), Gaps = 2/182 (1%)

Query: 1   MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVT-SVDQLVTWARTGSLMWMT 59
           MGLT+         +       D         +     L    +  ++ W R  SL    
Sbjct: 1   MGLTSRPTPASQQPAPPLPPAADPVLLPEPKRLGVLSRLAPEPMKVVLNWGRRYSLWVFN 60

Query: 60  FGLACCAVEMMQASMPRYDLERFGFAPR-ASPRQSDVMIVAGTLTNKMASALRRVYDQMP 118
           FGLACCA+E + ASM R+D  R G  P    PRQ+D+MIV+GT+T+KMA A++R+Y+QMP
Sbjct: 61  FGLACCAIEFIAASMARHDFIRLGVIPFAPGPRQADLMIVSGTVTDKMAPAVKRLYEQMP 120

Query: 119 EPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           EP+YVIS G+C+N GG Y  SYSV +G D+I+PVD+YVPGCPP  EAL+ GIL LQ+KI 
Sbjct: 121 EPKYVISFGACSNCGGPYWDSYSVTKGVDQIIPVDVYVPGCPPRPEALLQGILKLQEKIA 180

Query: 179 RV 180
           R 
Sbjct: 181 RE 182


>gi|294630797|ref|ZP_06709357.1| NADH-quinone oxidoreductase, B subunit [Streptomyces sp. e14]
 gi|292834130|gb|EFF92479.1| NADH-quinone oxidoreductase, B subunit [Streptomyces sp. e14]
          Length = 184

 Score =  210 bits (536), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 83/152 (54%), Positives = 105/152 (69%), Gaps = 2/152 (1%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89
            E    GFL+T+V+Q   W R  S+   TFGLACCA+EMM     RYDL RFG    R S
Sbjct: 4   EEKLPSGFLLTTVEQAAGWVRKASVFPATFGLACCAIEMMTTGAGRYDLARFGMEVFRGS 63

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQ+D+MIVAG ++ KMA  LR+VYDQMP P++VISMG CA+ GG ++  Y++V+G D I
Sbjct: 64  PRQADLMIVAGRVSQKMAPVLRQVYDQMPNPKWVISMGVCASSGGMFNN-YAIVQGVDHI 122

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
           VPVDIY+PGCPP  E L+  IL L +KI+   
Sbjct: 123 VPVDIYLPGCPPRPEMLMDAILKLHQKIQSTK 154


>gi|116624397|ref|YP_826553.1| NADH dehydrogenase subunit B [Candidatus Solibacter usitatus
           Ellin6076]
 gi|122252953|sp|Q01VP7|NUOB2_SOLUE RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName:
           Full=NADH dehydrogenase I subunit B 2; AltName:
           Full=NDH-1 subunit B 2
 gi|116227559|gb|ABJ86268.1| NADH-quinone oxidoreductase, B subunit [Candidatus Solibacter
           usitatus Ellin6076]
          Length = 184

 Score =  210 bits (536), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 78/181 (43%), Positives = 122/181 (67%), Gaps = 4/181 (2%)

Query: 6   VNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACC 65
           + + + S   +    +VD      ++   ++G ++T++D  V WAR  S+  MTFGLACC
Sbjct: 1   MEKPMASSGPAELFTRVDDYSVANAAAAANEGIVMTTLDAAVNWARKNSIWPMTFGLACC 60

Query: 66  AVEMMQASMPRYDLERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           A+EMM  S  R+D+ RFG    R SPRQSD+MI+AG ++NKMA  +R +Y QMPEP++ I
Sbjct: 61  AIEMMSMSASRFDIARFGAEVFRGSPRQSDLMIIAGRVSNKMAPVIRHLYQQMPEPKWAI 120

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR-RVGNV 183
           SMG+CA   G ++  Y+++   ++++P+D++VPGCPP  E LIY +++LQ+KI+ + G V
Sbjct: 121 SMGACATSTGVFNN-YALI-PVNQVIPIDVFVPGCPPRPEQLIYALMMLQEKIKNQSGTV 178

Query: 184 K 184
           K
Sbjct: 179 K 179


>gi|323148910|ref|YP_004222465.1| NADH-plastoquinone oxidoreductase subunit K [Smilax china]
 gi|308742601|gb|ADO33452.1| NADH-plastoquinone oxidoreductase subunit K [Smilax china]
          Length = 284

 Score =  210 bits (536), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 71/174 (40%), Positives = 109/174 (62%), Gaps = 2/174 (1%)

Query: 5   TVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLAC 64
           + NQ    G+          +F  +  + T    + T+++ L  W+R  SL  + +G +C
Sbjct: 44  SDNQNKREGKDYIETVTNLIEFPLL-DQTTPNSVISTTLNDLSNWSRLSSLWPLLYGTSC 102

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E       R+D +R+G  PR+SPR++ +++ AGT+T KMA +L R+Y+QMPEP+YVI
Sbjct: 103 CFIEFASLIGSRFDFDRYGLVPRSSPRKAALILPAGTVTMKMAPSLVRLYEQMPEPKYVI 162

Query: 125 SMGSCANGGGYYH-YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
           +MG+C   GG +   SYS VRG D+++PVD+Y+PGCPP  EA+I  I  L+KKI
Sbjct: 163 AMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKKI 216


>gi|302536169|ref|ZP_07288511.1| NADH dehydrogenase subunit B [Streptomyces sp. C]
 gi|302445064|gb|EFL16880.1| NADH dehydrogenase subunit B [Streptomyces sp. C]
          Length = 184

 Score =  210 bits (536), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 83/149 (55%), Positives = 105/149 (70%), Gaps = 2/149 (1%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89
            E    GFL+T+V+Q   W R  S+   TFGLACCA+EMM     RYDL RFG    R S
Sbjct: 4   EEKLPSGFLLTTVEQAAGWVRKSSVFPATFGLACCAIEMMTTGAGRYDLARFGMEVFRGS 63

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQ+D+MIVAG ++ KMA  LR+VYDQMP P++VISMG CA+ GG ++  Y++V+G D I
Sbjct: 64  PRQADLMIVAGRVSQKMAPVLRQVYDQMPAPKWVISMGVCASSGGMFNN-YAIVQGVDHI 122

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           VPVDIY+PGCPP  E L+  IL L +KI+
Sbjct: 123 VPVDIYLPGCPPRPEMLMDAILKLHQKIQ 151


>gi|297616443|ref|YP_003701602.1| NADH-quinone oxidoreductase subunit beta [Syntrophothermus
           lipocalidus DSM 12680]
 gi|297144280|gb|ADI01037.1| NADH-quinone oxidoreductase, B subunit [Syntrophothermus
           lipocalidus DSM 12680]
          Length = 160

 Score =  210 bits (536), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 69/143 (48%), Positives = 102/143 (71%), Gaps = 1/143 (0%)

Query: 37  GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQSDV 95
             +VT+++++  W R+ S   +T+G  CC +EMM A   R+D+ R+G+   RASPRQ+D+
Sbjct: 8   NIIVTTLEKIWNWGRSRSFWPLTYGCNCCPIEMMAAGAARFDIARYGYEVFRASPRQADL 67

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
           +IVAG +T KM   + RV+ QMPEP++V++MG+CA  GG +   YSV+ GCD  +PVD+Y
Sbjct: 68  LIVAGPVTLKMKPVVERVWAQMPEPKWVLAMGNCATSGGPFKDGYSVLPGCDSFLPVDVY 127

Query: 156 VPGCPPTAEALIYGILLLQKKIR 178
           VPGCPP  EAL +G+L L+KK+ 
Sbjct: 128 VPGCPPRPEALFHGLLELKKKVE 150


>gi|271962156|ref|YP_003336352.1| NADH dehydrogenase (quinone) [Streptosporangium roseum DSM 43021]
 gi|270505331|gb|ACZ83609.1| NADH dehydrogenase (quinone) [Streptosporangium roseum DSM 43021]
          Length = 183

 Score =  210 bits (536), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 78/152 (51%), Positives = 107/152 (70%), Gaps = 2/152 (1%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR-AS 89
            E    GF++++V+Q+  WAR  S+   TFGLACCA+E+M    P++DL RFG     AS
Sbjct: 4   EEKLPSGFMLSTVEQVAGWARKNSVWPATFGLACCAIELMSTGGPKHDLARFGMERASAS 63

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQ+D+MIVAG L+ KMA  LR++YDQM EP++VI+MG CA+ GG ++  Y++V+G D +
Sbjct: 64  PRQADLMIVAGRLSQKMAPVLRQIYDQMAEPKWVIAMGVCASSGGMFNN-YAIVQGVDHV 122

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
           VPVDIY+PGCPP  E LI  I+ L  KI+   
Sbjct: 123 VPVDIYLPGCPPRPEMLIDAIVKLHDKIQNTK 154


>gi|53804524|ref|YP_113819.1| NADH dehydrogenase subunit B [Methylococcus capsulatus str. Bath]
 gi|81682183|sp|Q608X8|NUOB_METCA RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|53758285|gb|AAU92576.1| NADH dehydrogenase I, B subunit [Methylococcus capsulatus str.
           Bath]
          Length = 213

 Score =  210 bits (536), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 77/180 (42%), Positives = 109/180 (60%), Gaps = 13/180 (7%)

Query: 2   GLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFG 61
            LT  +Q         + E           E   +  L   +D LV W R  S+    FG
Sbjct: 4   SLTRADQTPAPKPGGQTYE-----------EALRRNILFARLDDLVRWGRKNSIWPFNFG 52

Query: 62  LACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           L+CC VEM  A   R+D+ RFG    RASPRQ+D+M+++GT+  KMA  ++ +YDQ+ EP
Sbjct: 53  LSCCYVEMATAFTSRFDIARFGSEVIRASPRQADLMVISGTVFRKMAPVVKHLYDQLLEP 112

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           +++ISMGSCAN GG Y   YSVV+G D+ +PVD+YVPGCPP  EAL+ G+++LQ+ + + 
Sbjct: 113 KWIISMGSCANSGGMY-DIYSVVQGVDKFLPVDVYVPGCPPRPEALLEGLMMLQESVGKE 171


>gi|254391138|ref|ZP_05006345.1| NADH dehydrogenase beta subunit [Streptomyces clavuligerus ATCC
           27064]
 gi|294814395|ref|ZP_06773038.1| NADH-quinone oxidoreductase subunit B [Streptomyces clavuligerus
           ATCC 27064]
 gi|326442785|ref|ZP_08217519.1| NADH dehydrogenase subunit B [Streptomyces clavuligerus ATCC 27064]
 gi|197704832|gb|EDY50644.1| NADH dehydrogenase beta subunit [Streptomyces clavuligerus ATCC
           27064]
 gi|294326994|gb|EFG08637.1| NADH-quinone oxidoreductase subunit B [Streptomyces clavuligerus
           ATCC 27064]
          Length = 184

 Score =  210 bits (536), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 83/149 (55%), Positives = 105/149 (70%), Gaps = 2/149 (1%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89
            E    GFL+T+V+Q   W R  S+   TFGLACCA+EMM     RYDL RFG    R S
Sbjct: 4   EEKLPSGFLLTTVEQAAGWVRKASVFPATFGLACCAIEMMTTGAGRYDLARFGMEVFRGS 63

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQ+D+MIVAG ++ KMA  LR+VYDQMP P++VISMG CA+ GG ++  Y++V+G D I
Sbjct: 64  PRQADLMIVAGRVSQKMAPVLRQVYDQMPNPKWVISMGVCASSGGMFNN-YAIVQGVDHI 122

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           VPVDIY+PGCPP  E L+  IL L +KI+
Sbjct: 123 VPVDIYLPGCPPRPEMLMDAILKLHQKIQ 151


>gi|255961387|ref|YP_003097580.1| NADH dehydrogenase 27 kDa subunit [Dendrocalamus latiflorus]
 gi|255040264|gb|ACT99924.1| NADH dehydrogenase 27 kDa subunit [Dendrocalamus latiflorus]
          Length = 246

 Score =  210 bits (536), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 65/154 (42%), Positives = 103/154 (66%), Gaps = 1/154 (0%)

Query: 28  RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
            +  + +    + T+ + L  W++  SL  + +G +CC +E       R+D +R+G+ P+
Sbjct: 28  PLLDQTSSNSVISTTPNDLSNWSKLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGWVPK 87

Query: 88  ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146
           +SPRQ+++++ AGT T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG 
Sbjct: 88  SSPRQANLILTAGTETMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 147

Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           D+++PVD+Y+PGCPP  EA+I  +  L+KKI R 
Sbjct: 148 DKLIPVDVYLPGCPPKPEAVIDALTKLRKKISRE 181


>gi|16082574|ref|NP_394429.1| NADH dehydrogenase subunit B [Thermoplasma acidophilum DSM 1728]
          Length = 157

 Score =  210 bits (536), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 85/148 (57%), Positives = 107/148 (72%), Gaps = 1/148 (0%)

Query: 32  EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APRASP 90
           +    G + T++DQ + WAR+ SL  +TFGLACCA+EMM       D+ RFG    R SP
Sbjct: 5   KTGEVGVVTTTLDQALEWARSNSLWPLTFGLACCAIEMMAIQASDMDISRFGSEIFRNSP 64

Query: 91  RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150
           RQSD+MIV+GT+T KMA  +RR+YD+MP P+YVI+ G C   GG Y+  YSVV G DR+V
Sbjct: 65  RQSDLMIVSGTVTKKMAPRVRRIYDEMPYPKYVIAQGVCVIQGGPYNQGYSVVLGVDRVV 124

Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIR 178
           PVD+Y+PGCPPT EAL  GI+LLQKKIR
Sbjct: 125 PVDVYIPGCPPTPEALTNGIILLQKKIR 152


>gi|239943477|ref|ZP_04695414.1| NADH dehydrogenase subunit B [Streptomyces roseosporus NRRL 15998]
 gi|239989931|ref|ZP_04710595.1| NADH dehydrogenase subunit B [Streptomyces roseosporus NRRL 11379]
 gi|291446948|ref|ZP_06586338.1| NADH dehydrogenase subunit B [Streptomyces roseosporus NRRL 15998]
 gi|291349895|gb|EFE76799.1| NADH dehydrogenase subunit B [Streptomyces roseosporus NRRL 15998]
          Length = 184

 Score =  210 bits (536), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 82/149 (55%), Positives = 105/149 (70%), Gaps = 2/149 (1%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89
            E    GF++T+V+Q   W R  S+   TFGLACCA+EMM     RYDL RFG    R S
Sbjct: 4   EEKLPSGFVLTTVEQAAGWVRKASVFPATFGLACCAIEMMTTGAGRYDLARFGMEVFRGS 63

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQ+D+MIVAG ++ KMA  LR+VYDQMP P++VISMG CA+ GG ++  Y++V+G D I
Sbjct: 64  PRQADLMIVAGRVSQKMAPVLRQVYDQMPNPKWVISMGVCASSGGMFNN-YAIVQGVDHI 122

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           VPVDIY+PGCPP  E L+  IL L +KI+
Sbjct: 123 VPVDIYLPGCPPRPEMLLDAILKLHQKIQ 151


>gi|38505806|ref|NP_942425.1| NADH dehydrogenase subunit B [Synechocystis sp. PCC 6803]
 gi|131407|sp|P17062|NDHK2_SYNY3 RecName: Full=NAD(P)H-quinone oxidoreductase subunit K 2; AltName:
           Full=NAD(P)H dehydrogenase I subunit K 2; AltName:
           Full=NDH-1 subunit K 2; Short=NDH-K 2
 gi|48068|emb|CAA35236.1| unnamed protein product [Synechocystis sp. PCC 6803]
 gi|38423830|dbj|BAD02039.1| NADH dehydrogenase subunit [Synechocystis sp. PCC 6803]
          Length = 219

 Score =  210 bits (535), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 75/158 (47%), Positives = 110/158 (69%), Gaps = 2/158 (1%)

Query: 21  KVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLE 80
           +      +++ E++    ++T +D +  WAR  +L  M FG ACC +E M A  PR+DLE
Sbjct: 11  QNPIQAPQVTKELSE-NVILTCLDDIYNWARLSTLYPMMFGTACCFMEFMAAFGPRFDLE 69

Query: 81  RFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YS 139
           RFG  PRA+PRQ+D+MI AGT+T K A AL ++Y+Q+PEP+YVI+MG+C    G +   S
Sbjct: 70  RFGSIPRATPRQADLMITAGTITMKYAPALVQLYEQIPEPKYVIAMGACTITAGMFSADS 129

Query: 140 YSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
            + VRG D+++PVD+Y+PGCPP  EA+I GI+ L+KK+
Sbjct: 130 PTAVRGVDKLIPVDVYIPGCPPRPEAVIDGIIKLRKKV 167


>gi|222479140|ref|YP_002565377.1| NADH-quinone oxidoreductase, B subunit [Halorubrum lacusprofundi
           ATCC 49239]
 gi|222452042|gb|ACM56307.1| NADH-quinone oxidoreductase, B subunit [Halorubrum lacusprofundi
           ATCC 49239]
          Length = 232

 Score =  210 bits (535), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 76/176 (43%), Positives = 117/176 (66%), Gaps = 1/176 (0%)

Query: 3   LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62
           +T  +Q +   + S    + D   SR+        F++T  D+ + W R  S+  + FG+
Sbjct: 8   ITDESQVVTETRDSRMTGQGDRFNSRLREAFGSSPFILTKFDKFLNWCRGSSMFMLQFGI 67

Query: 63  ACCAVEMMQASMPRYDLERFGF-APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPR 121
           ACC++EMM     ++DL+RFG   PRASPRQ+DVMIV GT+ +K A  ++RVYDQMPEP+
Sbjct: 68  ACCSIEMMHTYAVKHDLDRFGSGVPRASPRQADVMIVPGTIVSKFAPRMKRVYDQMPEPK 127

Query: 122 YVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
           +V+ MGSC   GG +   Y+V++G + ++P+DI+VPGCPP  EAL+YG++ LQ+++
Sbjct: 128 FVVGMGSCTISGGPFQEGYNVIKGAEEVIPIDIHVPGCPPRPEALVYGVVKLQERV 183


>gi|297159509|gb|ADI09221.1| NADH dehydrogenase subunit B [Streptomyces bingchenggensis BCW-1]
          Length = 184

 Score =  210 bits (535), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 83/152 (54%), Positives = 105/152 (69%), Gaps = 2/152 (1%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89
            +    GFL+T+V+Q    AR  S+   TFGLACCA+EMM     RYDL RFG    R S
Sbjct: 4   EDKLPSGFLLTTVEQAAGLARKSSVFPATFGLACCAIEMMTTGAGRYDLARFGMEVFRGS 63

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQ+D+MIVAG ++ KMA  LR+VYDQMP P++VISMG CA+ GG ++  Y++V+G D I
Sbjct: 64  PRQADLMIVAGRVSQKMAPVLRQVYDQMPNPKWVISMGVCASSGGMFNN-YAIVQGVDHI 122

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
           VPVDIY+PGCPP  E L+  IL L +KIR   
Sbjct: 123 VPVDIYLPGCPPRPEMLLDAILKLHQKIREEK 154


>gi|297201624|ref|ZP_06919021.1| NADH dehydrogenase subunit B [Streptomyces sviceus ATCC 29083]
 gi|197711005|gb|EDY55039.1| NADH dehydrogenase subunit B [Streptomyces sviceus ATCC 29083]
          Length = 184

 Score =  210 bits (535), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 83/149 (55%), Positives = 105/149 (70%), Gaps = 2/149 (1%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89
            E    GFL+T+V+Q   W R  S+   TFGLACCA+EMM     RYDL RFG    R S
Sbjct: 4   EEKLPSGFLLTTVEQAAGWVRKASVFPATFGLACCAIEMMTTGAGRYDLARFGMEVFRGS 63

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQ+D+MIVAG ++ KMA  LR+VYDQMP P++VISMG CA+ GG ++  Y++V+G D I
Sbjct: 64  PRQADLMIVAGRVSQKMAPVLRQVYDQMPNPKWVISMGVCASSGGMFNN-YAIVQGVDHI 122

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           VPVDIY+PGCPP  E L+  IL L +KI+
Sbjct: 123 VPVDIYLPGCPPRPEMLMDAILKLHQKIQ 151


>gi|282860720|ref|ZP_06269786.1| NADH-quinone oxidoreductase, B subunit [Streptomyces sp. ACTE]
 gi|282564456|gb|EFB69992.1| NADH-quinone oxidoreductase, B subunit [Streptomyces sp. ACTE]
          Length = 184

 Score =  210 bits (535), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 82/149 (55%), Positives = 105/149 (70%), Gaps = 2/149 (1%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89
            E    GF++T+V+Q   W R  S+   TFGLACCA+EMM     RYDL RFG    R S
Sbjct: 4   EEKLPSGFVLTTVEQAAGWVRKSSVFPATFGLACCAIEMMTTGAGRYDLARFGMEVFRGS 63

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQ+D+MIVAG ++ KMA  LR+VYDQMP P++VISMG CA+ GG ++  Y++V+G D I
Sbjct: 64  PRQADLMIVAGRVSQKMAPVLRQVYDQMPSPKWVISMGVCASSGGMFNN-YAIVQGVDHI 122

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           VPVDIY+PGCPP  E L+  IL L +KI+
Sbjct: 123 VPVDIYLPGCPPRPEMLMDAILKLHQKIQ 151


>gi|326329611|ref|ZP_08195933.1| NADH dehydrogenase I, B subunit [Nocardioidaceae bacterium Broad-1]
 gi|325952607|gb|EGD44625.1| NADH dehydrogenase I, B subunit [Nocardioidaceae bacterium Broad-1]
          Length = 184

 Score =  210 bits (535), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 80/150 (53%), Positives = 107/150 (71%), Gaps = 2/150 (1%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89
            E    G L+T+V+ L  + R  SL   TFGLACCA+EMM +  P+YDL R+G    RAS
Sbjct: 4   EEKLPSGVLLTTVEGLAGYFRKASLWPATFGLACCAIEMMTSGGPKYDLARYGMEVFRAS 63

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQ+D+MIVAG ++ KMA  LR++YDQMPEP++V++MG CA+ GG ++  Y++V+G D I
Sbjct: 64  PRQADLMIVAGRVSQKMAPVLRQIYDQMPEPKWVLAMGVCASSGGMFNN-YAIVQGVDHI 122

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           VPVD+Y+PGCPP  E LI  IL L  KI+ 
Sbjct: 123 VPVDMYLPGCPPRPEMLIDAILKLHDKIQH 152


>gi|307328622|ref|ZP_07607795.1| NADH-quinone oxidoreductase, B subunit [Streptomyces violaceusniger
           Tu 4113]
 gi|306885734|gb|EFN16747.1| NADH-quinone oxidoreductase, B subunit [Streptomyces violaceusniger
           Tu 4113]
          Length = 184

 Score =  210 bits (535), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 84/152 (55%), Positives = 105/152 (69%), Gaps = 2/152 (1%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89
            E    GFL+T+V+Q    AR  S+   TFGLACCA+EMM     RYDL RFG    R S
Sbjct: 4   EEKLPSGFLLTTVEQAAGLARKSSVFPATFGLACCAIEMMTTGAGRYDLARFGMEVFRGS 63

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQ+D+MIVAG ++ KMA  LR+VYDQMP P++VISMG CA+ GG ++  Y++V+G D I
Sbjct: 64  PRQADLMIVAGRVSQKMAPVLRQVYDQMPNPKWVISMGVCASSGGMFNN-YAIVQGVDHI 122

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
           VPVDIY+PGCPP  E L+  IL L +KIR   
Sbjct: 123 VPVDIYLPGCPPRPEMLLDSILKLHQKIREEK 154


>gi|148657777|ref|YP_001277982.1| NADH dehydrogenase subunit B [Roseiflexus sp. RS-1]
 gi|238065039|sp|A5UZH9|NUOB2_ROSS1 RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName:
           Full=NADH dehydrogenase I subunit B 2; AltName:
           Full=NDH-1 subunit B 2
 gi|148569887|gb|ABQ92032.1| NADH-quinone oxidoreductase, B subunit [Roseiflexus sp. RS-1]
          Length = 167

 Score =  210 bits (535), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 79/154 (51%), Positives = 110/154 (71%), Gaps = 2/154 (1%)

Query: 29  ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APR 87
           I  +    G +  S++QLV W+R+ ++  + FGLACCA+EMM A    YDL RFG    R
Sbjct: 3   IEQKAGDMGIVTASLEQLVNWSRSSAMWPLLFGLACCAIEMMGAQGANYDLSRFGMEINR 62

Query: 88  ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCD 147
           ASPRQ+D+MIVAG ++ KMA  +RR+YDQM +P++VI+MG CA  GG ++  Y++V+G D
Sbjct: 63  ASPRQADLMIVAGRVSRKMAPVVRRLYDQMADPKWVIAMGDCAACGGVFNN-YAIVQGVD 121

Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
            IVPVD+YV GCPP  EALI GI+ L +K++R+ 
Sbjct: 122 EIVPVDVYVAGCPPRPEALIDGIIHLHEKVKRMR 155


>gi|320160240|ref|YP_004173464.1| NADH-quinone oxidoreductase subunit B [Anaerolinea thermophila
           UNI-1]
 gi|319994093|dbj|BAJ62864.1| NADH-quinone oxidoreductase chain B [Anaerolinea thermophila UNI-1]
          Length = 160

 Score =  210 bits (535), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 79/157 (50%), Positives = 111/157 (70%), Gaps = 2/157 (1%)

Query: 29  ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-R 87
           +  ++ + G +   +++ V WART ++  M FGLACCA+EMM A    YD+ RFG    R
Sbjct: 3   VEQKLGNMGVVTLKLEEAVNWARTNAMWPMLFGLACCAIEMMAAQASNYDMSRFGMELMR 62

Query: 88  ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCD 147
           ASPRQSD+MIVAG ++ KMA  LR++YDQMP P++VI+MG CA+ GG ++  Y++++G D
Sbjct: 63  ASPRQSDLMIVAGRVSRKMAPVLRQLYDQMPYPKWVIAMGDCASCGGVFNN-YAILQGVD 121

Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
            IVPVD+YV GCPP  E LI+G+L L  K+R+   VK
Sbjct: 122 EIVPVDVYVAGCPPRPEGLIHGVLTLHDKVRKEKLVK 158


>gi|110667597|ref|YP_657408.1| NADH dehydrogenase, subunit B (ubiquinone) [Haloquadratum walsbyi
           DSM 16790]
 gi|109625344|emb|CAJ51766.1| NADH dehydrogenase, subunit B (ubiquinone) [Haloquadratum walsbyi
           DSM 16790]
          Length = 234

 Score =  210 bits (535), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 76/178 (42%), Positives = 115/178 (64%), Gaps = 2/178 (1%)

Query: 2   GLTTVNQKIISGQSSCSLEKVDADF-SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTF 60
              T + ++ +      +   D  F S++        F++T  DQ + W R  S+  + F
Sbjct: 8   AFVTDDTQVQTDTRDARISGTDERFNSKLREAFGSSPFILTKFDQFMNWVRGSSMFMLQF 67

Query: 61  GLACCAVEMMQASMPRYDLERFGF-APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119
           G+ACC++EMM     ++DL+RFG   PRASPRQ+DV+IV GT+ +K A  ++RVYDQMPE
Sbjct: 68  GIACCSIEMMHTYAVKHDLDRFGAGVPRASPRQADVIIVPGTIVSKFAPRMKRVYDQMPE 127

Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
           P++V+ MGSC   GG +   Y+V++G + ++PVDI++PGCPP  EAL+YGI  LQ++I
Sbjct: 128 PKFVVGMGSCTVSGGPFQEGYNVIKGAEEVIPVDIHIPGCPPRPEALVYGIAKLQERI 185


>gi|77917822|ref|YP_355637.1| trifunctional NADH dehydrogenase I subunit B/C/D [Pelobacter
           carbinolicus DSM 2380]
 gi|123575097|sp|Q3A825|NUBCD_PELCD RecName: Full=NADH-quinone oxidoreductase subunit B/C/D; AltName:
           Full=NADH dehydrogenase I subunit B/C/D; AltName:
           Full=NDH-1 subunit B/C/D
 gi|77543905|gb|ABA87467.1| NADH dehydrogenase subunit B / NADH dehydrogenase subunit D / NADH
           dehydrogenase subunit C [Pelobacter carbinolicus DSM
           2380]
          Length = 794

 Score =  210 bits (534), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 73/153 (47%), Positives = 109/153 (71%), Gaps = 2/153 (1%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RAS 89
           SE   K  ++T++D  + W R  S+  M FGL+CC VEMM +  PR+DL RFG    R +
Sbjct: 2   SESIPKNIILTTLDDAINWGRKNSMWPMFFGLSCCFVEMMGSMTPRFDLARFGAEVLRGT 61

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PR++D+M++AGT   KMA+++ RVY++M  P++VI+MGSCAN GG Y   YSV++G +++
Sbjct: 62  PREADLMVIAGTPFKKMAASMLRVYEEMANPKWVIAMGSCANSGGMY-DVYSVMQGVNQV 120

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
           +PVD+Y+PGCPP  EA + G++ LQ+KI R  +
Sbjct: 121 LPVDVYIPGCPPRPEAFMQGLMTLQEKIARKES 153


>gi|290958259|ref|YP_003489441.1| NADH dehydrogenase subunit NuoB [Streptomyces scabiei 87.22]
 gi|260647785|emb|CBG70890.1| NuoB, NADH dehydrogenase subunit [Streptomyces scabiei 87.22]
          Length = 184

 Score =  210 bits (534), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 83/149 (55%), Positives = 105/149 (70%), Gaps = 2/149 (1%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89
            E    GFL+T+V+Q   W R  S+   TFGLACCA+EMM     RYDL RFG    R S
Sbjct: 4   EEKLPSGFLLTTVEQAAGWVRKASVFPATFGLACCAIEMMTTGAGRYDLARFGMEVFRGS 63

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQ+D+MIVAG ++ KMA  LR+VYDQMP P++VISMG CA+ GG ++  Y++V+G D I
Sbjct: 64  PRQADLMIVAGRVSQKMAPVLRQVYDQMPNPKWVISMGVCASSGGMFNN-YAIVQGVDHI 122

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           VPVDIY+PGCPP  E L+  IL L +KI+
Sbjct: 123 VPVDIYLPGCPPRPEMLMDAILKLHQKIQ 151


>gi|156741308|ref|YP_001431437.1| NADH dehydrogenase subunit B [Roseiflexus castenholzii DSM 13941]
 gi|238065017|sp|A7NIW1|NUOB1_ROSCS RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName:
           Full=NADH dehydrogenase I subunit B 1; AltName:
           Full=NDH-1 subunit B 1
 gi|156232636|gb|ABU57419.1| NADH-quinone oxidoreductase, B subunit [Roseiflexus castenholzii
           DSM 13941]
          Length = 167

 Score =  210 bits (534), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 79/154 (51%), Positives = 110/154 (71%), Gaps = 2/154 (1%)

Query: 29  ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APR 87
           I  +    G +  S++Q+V W+R+ ++  + FGLACCA+EMM A    YDL RFG    R
Sbjct: 3   IEQKAGDMGIVTASLEQVVNWSRSNAMWPLLFGLACCAIEMMGAQGANYDLSRFGMEINR 62

Query: 88  ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCD 147
           ASPRQ+D+MIVAG ++ KMA  +RR+YDQM +P++VI+MG CA  GG ++  Y++V+G D
Sbjct: 63  ASPRQADLMIVAGRVSRKMAPVVRRLYDQMADPKWVIAMGDCAACGGVFNN-YAIVQGVD 121

Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
            IVPVD+YV GCPP  EALI GI+ L +K+RR+ 
Sbjct: 122 EIVPVDVYVAGCPPRPEALIDGIIHLHEKVRRMR 155


>gi|297563968|ref|YP_003682941.1| NADH-quinone oxidoreductase, B subunit [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296848417|gb|ADH70435.1| NADH-quinone oxidoreductase, B subunit [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
          Length = 181

 Score =  210 bits (534), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 76/152 (50%), Positives = 106/152 (69%), Gaps = 2/152 (1%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89
            E    G ++T+V+Q+V  AR  S+   TFGLACCA+EMM    P YDL RFG     A+
Sbjct: 4   EEKLPSGIMLTTVEQVVGLARKSSMWPATFGLACCAIEMMSVGGPHYDLARFGMEKFGAT 63

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQ+D+MIVAG ++ KMA  LR++YDQMPEP++VI+MG CA+ GG ++  Y++V+G D +
Sbjct: 64  PRQADLMIVAGRVSQKMAPVLRQIYDQMPEPKWVIAMGVCASSGGMFNN-YAIVQGVDHV 122

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
           VPVD+Y+PGCPP  E L+  +L L  K++   
Sbjct: 123 VPVDMYLPGCPPRPEMLLDAVLKLHDKVQNTK 154


>gi|326777317|ref|ZP_08236582.1| NAD(P)H-quinone oxidoreductase subunit K [Streptomyces cf. griseus
           XylebKG-1]
 gi|326657650|gb|EGE42496.1| NAD(P)H-quinone oxidoreductase subunit K [Streptomyces cf. griseus
           XylebKG-1]
          Length = 230

 Score =  210 bits (534), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 86/182 (47%), Positives = 113/182 (62%), Gaps = 4/182 (2%)

Query: 1   MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVT-SVDQLVTWARTGSLMWMT 59
           MGLT+         +S      D         +     L    +  ++ W R  SL    
Sbjct: 1   MGLTSRPTPASRQPASPP--PADPVLLPEPKRLGVLSRLAPEPMKVVLNWGRRYSLWVFN 58

Query: 60  FGLACCAVEMMQASMPRYDLERFGFAPR-ASPRQSDVMIVAGTLTNKMASALRRVYDQMP 118
           FGLACCA+E + ASM R+D  R G  P    PRQ+D+MIV+GT+T+KMA A++R+Y+QMP
Sbjct: 59  FGLACCAIEFIAASMARHDFIRLGVIPFAPGPRQADLMIVSGTVTDKMAPAVKRLYEQMP 118

Query: 119 EPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           EP+YVIS G+C+N GG Y  SYSV +G D+I+PVD+YVPGCPP  EAL+ GIL LQ+KI 
Sbjct: 119 EPKYVISFGACSNCGGPYWDSYSVTKGVDQIIPVDVYVPGCPPRPEALLQGILKLQEKIA 178

Query: 179 RV 180
           R 
Sbjct: 179 RE 180


>gi|298244920|ref|ZP_06968726.1| NADH-quinone oxidoreductase, B subunit [Ktedonobacter racemifer DSM
           44963]
 gi|297552401|gb|EFH86266.1| NADH-quinone oxidoreductase, B subunit [Ktedonobacter racemifer DSM
           44963]
          Length = 201

 Score =  210 bits (534), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 83/179 (46%), Positives = 118/179 (65%), Gaps = 9/179 (5%)

Query: 9   KIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLV----TWARTGSLMWMTFGLAC 64
            +       S+     +++    E+      +TS+  ++     WAR+ S+  + +GLAC
Sbjct: 15  GLRRKPIPLSMASGPHEYTPGDQELP---VQLTSLADMLQWAQNWARSKSVWPLGYGLAC 71

Query: 65  CAVEMMQ-ASMPRYDLERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122
           CA+EM+  AS P+YDL RFG    R+SPRQ+D+MIVAGT++ KM   LR +Y+QMPEP++
Sbjct: 72  CAIEMIASASAPQYDLSRFGSEVFRSSPRQADLMIVAGTVSIKMGPRLRLLYEQMPEPKW 131

Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
           VISMG CAN GG ++ SY  V+G D IVPVD+Y+PGCPP  EALI G+L L++KI + G
Sbjct: 132 VISMGQCANSGGEFYDSYYTVQGVDTIVPVDVYIPGCPPRPEALIEGLLKLREKIAKQG 190


>gi|315638063|ref|ZP_07893248.1| NADH-quinone oxidoreductase subunit B [Campylobacter upsaliensis
           JV21]
 gi|315481911|gb|EFU72530.1| NADH-quinone oxidoreductase subunit B [Campylobacter upsaliensis
           JV21]
          Length = 167

 Score =  210 bits (534), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 83/147 (56%), Positives = 110/147 (74%), Gaps = 1/147 (0%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
            ++TSVD+LV W R+ SL  +++GLACCA+EMM A   RYD +RFG   RASPR S+VMI
Sbjct: 14  VILTSVDKLVQWGRSNSLWALSYGLACCAIEMMAAGGSRYDFDRFGTIFRASPRHSEVMI 73

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           +AGTL  K A   RR+YD MP+P++VISMGSCAN GG ++ +YS V+G DRI+PVDIYVP
Sbjct: 74  IAGTLCKKHAEFTRRLYDMMPDPKWVISMGSCANTGGMFN-TYSTVQGVDRIIPVDIYVP 132

Query: 158 GCPPTAEALIYGILLLQKKIRRVGNVK 184
           GC P  E+  + +++LQKKIR+    +
Sbjct: 133 GCAPRPESFQFALMILQKKIRKEKASR 159


>gi|41409300|ref|NP_962136.1| NADH dehydrogenase subunit B [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|118465722|ref|YP_883186.1| NADH dehydrogenase subunit B [Mycobacterium avium 104]
 gi|254776456|ref|ZP_05217972.1| NADH dehydrogenase subunit B [Mycobacterium avium subsp. avium ATCC
           25291]
 gi|296169191|ref|ZP_06850844.1| NADH-quinone oxidoreductase subunit B [Mycobacterium
           parascrofulaceum ATCC BAA-614]
 gi|81571071|sp|Q73V14|NUOB_MYCPA RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|238065174|sp|A0QJU8|NUOB_MYCA1 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|41398120|gb|AAS05750.1| NuoB [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|118167009|gb|ABK67906.1| NADH-quinone oxidoreductase chain b [Mycobacterium avium 104]
 gi|295896089|gb|EFG75756.1| NADH-quinone oxidoreductase subunit B [Mycobacterium
           parascrofulaceum ATCC BAA-614]
          Length = 184

 Score =  210 bits (534), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 75/151 (49%), Positives = 110/151 (72%), Gaps = 2/151 (1%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89
            E    G L+++V+++  + R  SL   TFGLACCA+EMM  + PR+D+ RFG     A+
Sbjct: 4   EEQLPGGILLSTVEKVAGYVRKNSLWPATFGLACCAIEMMATAGPRFDIARFGMERFSAT 63

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQ+D+MIVAG ++ KMA  LR++YDQM EP++V++MG CA+ GG ++  Y++V+G D +
Sbjct: 64  PRQADLMIVAGRVSQKMAPVLRQIYDQMAEPKWVLAMGVCASSGGMFNN-YAIVQGVDHV 122

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           VPVDIY+PGCPP  E L+Y IL L +KI+++
Sbjct: 123 VPVDIYLPGCPPRPEMLLYAILKLHEKIQQM 153


>gi|289582900|ref|YP_003481366.1| NADH-quinone oxidoreductase subunit beta [Natrialba magadii ATCC
           43099]
 gi|289532453|gb|ADD06804.1| NADH-quinone oxidoreductase, B subunit [Natrialba magadii ATCC
           43099]
          Length = 235

 Score =  210 bits (534), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 78/172 (45%), Positives = 114/172 (66%), Gaps = 2/172 (1%)

Query: 9   KIISGQSSCSLEKVDADF-SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAV 67
                + +   E VD  F S++        F++T  D+ + W R  S+  + FG+ACC++
Sbjct: 16  PSTDTRDARIGEGVDDRFNSKLREAFGASPFILTKFDEFMNWVRGNSMFMLQFGIACCSI 75

Query: 68  EMMQASMPRYDLERFGF-APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISM 126
           EMM     ++DL+RFG   PRASPRQ+DVMIV GT+ +K    ++RVYDQMPEP++V+ M
Sbjct: 76  EMMHTYAIKHDLDRFGAGVPRASPRQADVMIVPGTIVSKFGPRMKRVYDQMPEPKFVVGM 135

Query: 127 GSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           GSC   GG +   Y+VV+G + I+P+DI+VPGCPP  EAL+YG+L LQ++I+
Sbjct: 136 GSCTISGGPFQEGYNVVKGAEEIIPIDIHVPGCPPRPEALLYGVLKLQERIK 187


>gi|301353373|ref|YP_003795584.1| NADH-plastoquinone oxidoreductase subunit K [Pteridium aquilinum
           subsp. aquilinum]
 gi|301016291|gb|ADK47578.1| NADH-plastoquinone oxidoreductase subunit K [Pteridium aquilinum
           subsp. aquilinum]
          Length = 252

 Score =  210 bits (534), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 66/160 (41%), Positives = 101/160 (63%), Gaps = 1/160 (0%)

Query: 22  VDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLER 81
           +++    +          + ++     W+R  SL  + +G +CC +E       R+D +R
Sbjct: 25  LNSVEPLLPEWGVSNSIFLANISDFSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDR 84

Query: 82  FGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSY 140
           +G  PR+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG     SY
Sbjct: 85  YGLVPRSSPRQADLIVTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMSSTDSY 144

Query: 141 SVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           S VRG D+++PVDI++PGCPP  EA+I  +  L+KKI R 
Sbjct: 145 STVRGVDKLIPVDIHLPGCPPKPEAIIDAVTKLRKKIARE 184


>gi|10640284|emb|CAC12098.1| probable NADH dehydrogenase, chain B [Thermoplasma acidophilum]
          Length = 149

 Score =  209 bits (533), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 85/143 (59%), Positives = 106/143 (74%), Gaps = 1/143 (0%)

Query: 37  GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APRASPRQSDV 95
           G + T++DQ + WAR+ SL  +TFGLACCA+EMM       D+ RFG    R SPRQSD+
Sbjct: 2   GVVTTTLDQALEWARSNSLWPLTFGLACCAIEMMAIQASDMDISRFGSEIFRNSPRQSDL 61

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
           MIV+GT+T KMA  +RR+YD+MP P+YVI+ G C   GG Y+  YSVV G DR+VPVD+Y
Sbjct: 62  MIVSGTVTKKMAPRVRRIYDEMPYPKYVIAQGVCVIQGGPYNQGYSVVLGVDRVVPVDVY 121

Query: 156 VPGCPPTAEALIYGILLLQKKIR 178
           +PGCPPT EAL  GI+LLQKKIR
Sbjct: 122 IPGCPPTPEALTNGIILLQKKIR 144


>gi|254382442|ref|ZP_04997801.1| NuoB [Streptomyces sp. Mg1]
 gi|194341346|gb|EDX22312.1| NuoB [Streptomyces sp. Mg1]
          Length = 184

 Score =  209 bits (533), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 83/149 (55%), Positives = 104/149 (69%), Gaps = 2/149 (1%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89
            E    GFL+T+V+Q   W R  S+   TFGLACCA+EMM     RYDL RFG    R S
Sbjct: 4   EEKLPSGFLLTTVEQAAGWVRKSSVFPATFGLACCAIEMMTTGAGRYDLARFGMEVFRGS 63

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQ+D+MIVAG ++ KMA  LR+VYDQMP P++VISMG CA+ GG ++  Y++V+G D I
Sbjct: 64  PRQADLMIVAGRVSQKMAPVLRQVYDQMPAPKWVISMGVCASSGGMFNN-YAIVQGVDHI 122

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           VPVDIY+PGCPP  E L+  IL L  KI+
Sbjct: 123 VPVDIYLPGCPPRPEMLMDAILKLHHKIQ 151


>gi|86739252|ref|YP_479652.1| NADH dehydrogenase subunit B [Frankia sp. CcI3]
 gi|123765293|sp|Q2JFL9|NUOB_FRASC RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|86566114|gb|ABD09923.1| NADH dehydrogenase subunit B [Frankia sp. CcI3]
          Length = 271

 Score =  209 bits (533), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 81/148 (54%), Positives = 106/148 (71%), Gaps = 2/148 (1%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89
            E    G L+ SV++L  W+R  SL   TFGLACCA+EMM     RYDL RFG    RAS
Sbjct: 4   EEKLPGGVLLASVEKLANWSRRSSLWPATFGLACCAIEMMSTGAGRYDLSRFGMEVFRAS 63

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQ+D+MIVAG ++ KMA  LR++YDQMPEP++V+SMG CA+ GG ++  Y++V+G D I
Sbjct: 64  PRQADLMIVAGRVSQKMAPVLRQIYDQMPEPKWVLSMGVCASSGGMFNN-YAIVQGVDHI 122

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKI 177
           VPVD+Y+PGCPP  E L+  I+ L +KI
Sbjct: 123 VPVDMYLPGCPPRPEMLMDAIIKLHEKI 150


>gi|83589827|ref|YP_429836.1| NADH dehydrogenase subunit B [Moorella thermoacetica ATCC 39073]
 gi|123524686|sp|Q2RJU6|NUOB_MOOTA RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|83572741|gb|ABC19293.1| NADH dehydrogenase subunit B [Moorella thermoacetica ATCC 39073]
          Length = 166

 Score =  209 bits (533), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 80/151 (52%), Positives = 108/151 (71%), Gaps = 1/151 (0%)

Query: 28  RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-P 86
           + +        ++++VD ++ + R  S   +TFGLACCA+EMM A   RYD+ RFG+   
Sbjct: 7   KPADPQIPDNIILSTVDAMLNYCRAHSFWPVTFGLACCAIEMMAAGGARYDIARFGYEVF 66

Query: 87  RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGC 146
           R SPRQ+D+MIVAGT+T KMA  +RR+Y+QMP P++VI+MGSCA  GG +  SY+VV G 
Sbjct: 67  RPSPRQADLMIVAGTVTRKMAPLVRRLYEQMPAPKWVIAMGSCAISGGPFVDSYNVVPGV 126

Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
           D IVPVD+YVPGC P  EALI G+L L+KK+
Sbjct: 127 DTIVPVDVYVPGCAPRPEALINGLLALKKKV 157


>gi|239980151|ref|ZP_04702675.1| NADH dehydrogenase subunit B [Streptomyces albus J1074]
 gi|291452006|ref|ZP_06591396.1| NuoB [Streptomyces albus J1074]
 gi|291354955|gb|EFE81857.1| NuoB [Streptomyces albus J1074]
          Length = 184

 Score =  209 bits (533), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 81/149 (54%), Positives = 105/149 (70%), Gaps = 2/149 (1%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89
            E    GFL+T+V+Q   W R  S+   TFGLACCA+EMM     RYDL RFG    R S
Sbjct: 4   EEKLPSGFLLTTVEQAAGWVRKSSMFPATFGLACCAIEMMTTGAGRYDLARFGMEVFRGS 63

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQ+D+MIVAG ++ KMA  LR+VYDQMP P++VISMG CA+ GG ++  Y++V+G D I
Sbjct: 64  PRQADLMIVAGRVSQKMAPVLRQVYDQMPNPKWVISMGVCASSGGMFNN-YAIVQGVDHI 122

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           VPVDIY+PGCPP  E L+  I+ L +K++
Sbjct: 123 VPVDIYLPGCPPRPEMLVDAIVKLHQKVQ 151


>gi|72004758|ref|XP_780430.1| PREDICTED: similar to NADH-plastoquinone oxidoreductase
           [Strongylocentrotus purpuratus]
 gi|115948827|ref|XP_001196650.1| PREDICTED: similar to NADH-plastoquinone oxidoreductase
           [Strongylocentrotus purpuratus]
          Length = 132

 Score =  209 bits (533), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 105/126 (83%), Positives = 115/126 (91%)

Query: 58  MTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQM 117
           MT GLACCAVEMM  + PRYD++RFG   RASPRQSDVMIVAGTLTNKMA ALR+VYDQM
Sbjct: 1   MTLGLACCAVEMMHFAAPRYDMDRFGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQM 60

Query: 118 PEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
           PEPR+VISMGSCANGGGYYHYSY+VVRGCDRIVPVDIYVPGCPPTAEAL+YG+L LQKKI
Sbjct: 61  PEPRWVISMGSCANGGGYYHYSYAVVRGCDRIVPVDIYVPGCPPTAEALLYGVLQLQKKI 120

Query: 178 RRVGNV 183
           +R  N+
Sbjct: 121 KRAQNI 126


>gi|15616775|ref|NP_239987.1| NADH dehydrogenase subunit B [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
 gi|219681530|ref|YP_002467915.1| NADH dehydrogenase beta subunit [Buchnera aphidicola str. 5A
           (Acyrthosiphon pisum)]
 gi|219682086|ref|YP_002468470.1| NADH dehydrogenase beta subunit [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
 gi|257471211|ref|ZP_05635210.1| NADH dehydrogenase subunit B [Buchnera aphidicola str. LSR1
           (Acyrthosiphon pisum)]
 gi|11133957|sp|P57253|NUOB_BUCAI RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|238055274|sp|B8D8V6|NUOB_BUCA5 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|238055275|sp|B8D760|NUOB_BUCAT RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|25299001|pir||A84948 NADH2 dehydrogenase (ubiquinone) (EC 1.6.5.3) chain B [imported] -
           Buchnera sp. (strain APS)
 gi|10038838|dbj|BAB12873.1| NADH dehydrogenase I chain B [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
 gi|219621819|gb|ACL29975.1| NADH dehydrogenase beta subunit [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
 gi|219624373|gb|ACL30528.1| NADH dehydrogenase beta subunit [Buchnera aphidicola str. 5A
           (Acyrthosiphon pisum)]
 gi|311085897|gb|ADP65979.1| NADH dehydrogenase subunit B [Buchnera aphidicola str. LL01
           (Acyrthosiphon pisum)]
 gi|311086470|gb|ADP66551.1| NADH dehydrogenase subunit B [Buchnera aphidicola str. TLW03
           (Acyrthosiphon pisum)]
 gi|311087051|gb|ADP67131.1| NADH dehydrogenase subunit B [Buchnera aphidicola str. JF99
           (Acyrthosiphon pisum)]
 gi|311087610|gb|ADP67689.1| NADH dehydrogenase subunit B [Buchnera aphidicola str. JF98
           (Acyrthosiphon pisum)]
          Length = 224

 Score =  209 bits (533), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 78/171 (45%), Positives = 104/171 (60%), Gaps = 2/171 (1%)

Query: 12  SGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQ 71
                 ++E V         +    G +   + +LV W R  SL    FGL+CC VEM+ 
Sbjct: 15  KKYPKQTIESVSDPLEEYLKKNIFMGKITQLLHKLVNWGRKNSLWPYNFGLSCCYVEMVS 74

Query: 72  ASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCA 130
           A    +D+ RFG    RASPRQ+DVM++AGT   KMA  ++R+YDQM EP++VISMG+CA
Sbjct: 75  AFTSVHDVARFGSEVLRASPRQADVMVIAGTPFIKMAPVIQRLYDQMLEPKWVISMGACA 134

Query: 131 NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
           N GG Y   YSVV+G D+ +PVDIY+PGCPP  EA +  ++LLQK I    
Sbjct: 135 NSGGMY-DIYSVVQGVDKFLPVDIYIPGCPPRPEAYMQALILLQKLINEER 184


>gi|332669450|ref|YP_004452458.1| NADH-quinone oxidoreductase subunit B [Cellulomonas fimi ATCC 484]
 gi|332338488|gb|AEE45071.1| NADH-quinone oxidoreductase, B subunit [Cellulomonas fimi ATCC 484]
          Length = 183

 Score =  209 bits (532), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 84/150 (56%), Positives = 109/150 (72%), Gaps = 2/150 (1%)

Query: 32  EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASP 90
           E    GFL+T+V+ LV + R GSL  +TFGLACCA+EMM A  PRYDL RFG    RASP
Sbjct: 4   EEAPSGFLLTTVEDLVGYFRKGSLWPVTFGLACCAIEMMAAGAPRYDLSRFGMEVFRASP 63

Query: 91  RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150
           RQ+D+MIVAG ++ KMA  +R+VYDQM  P++V+SMG CA+ GG ++  Y++V+G D +V
Sbjct: 64  RQADLMIVAGRVSQKMAPVVRQVYDQMSAPKWVLSMGVCASSGGMFNN-YAIVQGVDHVV 122

Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           PVDIY+PGCPP  E LI  IL L  +I+  
Sbjct: 123 PVDIYLPGCPPRPEMLINAILTLHDQIQNE 152


>gi|57505815|ref|ZP_00371740.1| NADH2 dehydrogenase (ubiquinone) I chain B Cj1578c [Campylobacter
           upsaliensis RM3195]
 gi|57015845|gb|EAL52634.1| NADH2 dehydrogenase (ubiquinone) I chain B Cj1578c [Campylobacter
           upsaliensis RM3195]
          Length = 167

 Score =  209 bits (532), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 83/147 (56%), Positives = 110/147 (74%), Gaps = 1/147 (0%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
            ++TSVD+LV W R+ SL  +++GLACCA+EMM A   RYD +RFG   RASPR S+VMI
Sbjct: 14  VVLTSVDKLVQWGRSNSLWALSYGLACCAIEMMAAGGSRYDFDRFGTIFRASPRHSEVMI 73

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           +AGTL  K A   RR+YD MP+P++VISMGSCAN GG ++ +YS V+G DRI+PVDIYVP
Sbjct: 74  IAGTLCKKHAEFTRRLYDMMPDPKWVISMGSCANTGGMFN-TYSTVQGVDRIIPVDIYVP 132

Query: 158 GCPPTAEALIYGILLLQKKIRRVGNVK 184
           GC P  E+  + +++LQKKIR+    +
Sbjct: 133 GCAPRPESFQFALMILQKKIRKEKASR 159


>gi|300123970|emb|CBK25241.2| unnamed protein product [Blastocystis hominis]
          Length = 274

 Score =  209 bits (532), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 92/143 (64%), Positives = 117/143 (81%)

Query: 40  VTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVA 99
           VT+VD+++ + R GS+   TFGLACCA+EM+ AS  R+D ER G  PRA+PRQ+D+MIV+
Sbjct: 125 VTTVDKVIGYCRAGSVFPQTFGLACCAMEMIDASSARFDFERLGMIPRATPRQADLMIVS 184

Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGC 159
           GT+TNKMA A+RR+YDQM EPRYVISMGSCAN GGYY YSY+VVRG DR+ PVD YVPGC
Sbjct: 185 GTVTNKMAPAIRRLYDQMSEPRYVISMGSCANSGGYYAYSYNVVRGVDRLFPVDYYVPGC 244

Query: 160 PPTAEALIYGILLLQKKIRRVGN 182
           PPTA+ L+Y IL++ KK+++   
Sbjct: 245 PPTADGLLYAILMVMKKLKQQKT 267


>gi|302536203|ref|ZP_07288545.1| NADH dehydrogenase subunit NuoB2 [Streptomyces sp. C]
 gi|302445098|gb|EFL16914.1| NADH dehydrogenase subunit NuoB2 [Streptomyces sp. C]
          Length = 203

 Score =  209 bits (532), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 86/182 (47%), Positives = 113/182 (62%), Gaps = 11/182 (6%)

Query: 1   MGLTTVNQKIISGQSSC-SLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMT 59
           M +T         Q       K     SR++ E          +  ++ W R  SL    
Sbjct: 1   MDVTPAVTPEPQPQPQLLPEPKRLGVLSRLAPE---------PMKVVLNWGRRYSLWVFN 51

Query: 60  FGLACCAVEMMQASMPRYDLERFGFAPR-ASPRQSDVMIVAGTLTNKMASALRRVYDQMP 118
           FGLACCA+E + ASM R+D  R G  P    PRQ+D+MIV+GT+T+KMA A++R+Y+QMP
Sbjct: 52  FGLACCAIEFIAASMARHDFIRLGVIPFAPGPRQADLMIVSGTVTDKMAPAVKRLYEQMP 111

Query: 119 EPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           EP+YVIS G+C+N GG Y  SYSV +G D+I+PVD+YVPGCPP  EAL+ GIL LQ+KI 
Sbjct: 112 EPKYVISFGACSNCGGPYWDSYSVTKGVDQIIPVDVYVPGCPPRPEALLQGILKLQEKIA 171

Query: 179 RV 180
           R 
Sbjct: 172 RE 173


>gi|167945481|ref|ZP_02532555.1| NADH dehydrogenase subunit B [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 140

 Score =  209 bits (532), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 102/138 (73%), Positives = 114/138 (82%), Gaps = 1/138 (0%)

Query: 47  VTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKM 106
           + WARTGSL  MTFGLACCAVEMM A+  RYD++RFG   R SPRQSDVMIVAGTL NKM
Sbjct: 1   INWARTGSLWPMTFGLACCAVEMMHAAAARYDMDRFGIVFRPSPRQSDVMIVAGTLVNKM 60

Query: 107 ASA-LRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEA 165
           A+    R   + PEPR+VISMGSCANGGGYYHYSY+VVRGCDR+VPVDIYVPGCPPTAEA
Sbjct: 61  AAWRCARSTTRWPEPRWVISMGSCANGGGYYHYSYAVVRGCDRVVPVDIYVPGCPPTAEA 120

Query: 166 LIYGILLLQKKIRRVGNV 183
           L+YGI+ LQ KIRR   +
Sbjct: 121 LLYGIIQLQDKIRRTCTI 138


>gi|254821135|ref|ZP_05226136.1| NADH dehydrogenase subunit B [Mycobacterium intracellulare ATCC
           13950]
          Length = 184

 Score =  209 bits (532), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 75/151 (49%), Positives = 109/151 (72%), Gaps = 2/151 (1%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89
            E    G L+++V+++  + R  SL   TFGLACCA+EMM  + PR+D+ RFG     A+
Sbjct: 4   EEQLPGGILLSTVEKVAGYVRKNSLWPATFGLACCAIEMMATAGPRFDIARFGMERFSAT 63

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQ+D+MIVAG ++ KMA  LR++YDQM EP++V++MG CA+ GG ++  Y++V+G D +
Sbjct: 64  PRQADLMIVAGRVSQKMAPVLRQIYDQMAEPKWVLAMGVCASSGGMFNN-YAIVQGVDHV 122

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           VPVDIY+PGCPP  E L+Y IL L +KI+ +
Sbjct: 123 VPVDIYLPGCPPRPEMLLYAILKLHEKIQEM 153


>gi|282891849|ref|ZP_06300329.1| hypothetical protein pah_c198o042 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281498282|gb|EFB40621.1| hypothetical protein pah_c198o042 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 157

 Score =  209 bits (532), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 84/142 (59%), Positives = 107/142 (75%), Gaps = 2/142 (1%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQSDVM 96
           F+V  + +L+ WAR+ SL    FGLACCA+EMM A+  RYD+ RFG    RASPRQSDVM
Sbjct: 11  FIVAPLQKLIDWARSNSLWPAQFGLACCAIEMMSAAASRYDMARFGMEVFRASPRQSDVM 70

Query: 97  IVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV 156
           IVAG ++ KMA  LR +Y+QM EP++VI+MG CA+ GG Y+  Y+V+ G D+IVPVD+YV
Sbjct: 71  IVAGRVSQKMAPVLRTIYEQMLEPKWVIAMGDCASTGGVYNN-YAVIPGVDQIVPVDVYV 129

Query: 157 PGCPPTAEALIYGILLLQKKIR 178
            GCPP  EALI G++LLQ KIR
Sbjct: 130 AGCPPRPEALIDGLILLQNKIR 151


>gi|320009166|gb|ADW04016.1| NADH-quinone oxidoreductase, B subunit [Streptomyces flavogriseus
           ATCC 33331]
          Length = 205

 Score =  209 bits (532), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 78/136 (57%), Positives = 102/136 (75%), Gaps = 1/136 (0%)

Query: 46  LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR-ASPRQSDVMIVAGTLTN 104
           ++ W R  SL    FGLACCA+E + ASM R+D  R G  P    PRQ+D+M+V+GT+T+
Sbjct: 35  VLNWGRRYSLWVFNFGLACCAIEFIAASMARHDFIRLGVIPFAPGPRQADLMVVSGTVTD 94

Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164
           KMA A++R+Y+QMPEP+YVIS G+C+N GG Y  SYSV +G D+I+PVD+YVPGCPP  E
Sbjct: 95  KMAPAVKRLYEQMPEPKYVISFGACSNCGGPYWDSYSVTKGVDQIIPVDVYVPGCPPRPE 154

Query: 165 ALIYGILLLQKKIRRV 180
           AL+ GIL LQ+KI R 
Sbjct: 155 ALLQGILKLQEKIARE 170


>gi|302543443|ref|ZP_07295785.1| NADH dehydrogenase I, B subunit [Streptomyces hygroscopicus ATCC
           53653]
 gi|302461061|gb|EFL24154.1| NADH dehydrogenase I, B subunit [Streptomyces himastatinicus ATCC
           53653]
          Length = 184

 Score =  209 bits (532), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 84/152 (55%), Positives = 105/152 (69%), Gaps = 2/152 (1%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89
            E    GFL+T+V+Q    AR  S+   TFGLACCA+EMM     RYDL RFG    R S
Sbjct: 4   EEKLPSGFLLTTVEQAAGLARKSSVFPATFGLACCAIEMMTTGAGRYDLARFGMEVFRGS 63

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQ+D+MIVAG ++ KMA  LR+VYDQMP P++VISMG CA+ GG ++  Y++V+G D I
Sbjct: 64  PRQADLMIVAGRVSQKMAPVLRQVYDQMPNPKWVISMGVCASTGGMFNN-YAIVQGVDHI 122

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
           VPVDIY+PGCPP  E L+  IL L +KIR   
Sbjct: 123 VPVDIYLPGCPPRPEMLMDAILKLHEKIREEK 154


>gi|262200419|ref|YP_003271627.1| NADH-quinone oxidoreductase subunit B [Gordonia bronchialis DSM
           43247]
 gi|262083766|gb|ACY19734.1| NADH-quinone oxidoreductase, B subunit [Gordonia bronchialis DSM
           43247]
          Length = 184

 Score =  209 bits (532), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 80/151 (52%), Positives = 110/151 (72%), Gaps = 2/151 (1%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89
            E    GFL+++V++L  + R GSL   TFGLACCA+EMM  +  RYDL RFG    RAS
Sbjct: 4   EERLPSGFLLSTVEELAGFMRKGSLWPATFGLACCAIEMMATTSGRYDLARFGMEAFRAS 63

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQ+D+MIVAG ++ KMA  LR++YDQM EP++V++MG CA+ GG ++  Y++V+G D +
Sbjct: 64  PRQADLMIVAGRVSQKMAPVLRQIYDQMVEPKWVLAMGVCASSGGMFNN-YAIVQGVDHV 122

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           VPVDIY+PGCPP  E L+  IL L +KI+ +
Sbjct: 123 VPVDIYLPGCPPRPEMLLNAILKLHEKIQEM 153


>gi|238065263|sp|Q0RRW7|NUOB_FRAAA RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
          Length = 281

 Score =  209 bits (532), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 81/148 (54%), Positives = 106/148 (71%), Gaps = 2/148 (1%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89
            E    G L+ SV++L  W+R  SL   TFGLACCA+EMM     RYDL RFG    RAS
Sbjct: 4   EEKLPGGVLLASVEKLANWSRRSSLWPATFGLACCAIEMMSTGAGRYDLSRFGMEVFRAS 63

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQ+D+MIVAG ++ KMA  LR++YDQMPEP++V+SMG CA+ GG ++  Y++V+G D I
Sbjct: 64  PRQADLMIVAGRVSQKMAPVLRQIYDQMPEPKWVLSMGVCASSGGMFNN-YAIVQGVDHI 122

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKI 177
           VPVD+Y+PGCPP  E L+  I+ L +KI
Sbjct: 123 VPVDMYLPGCPPRPEMLMDAIIKLHEKI 150


>gi|284164402|ref|YP_003402681.1| NADH-quinone oxidoreductase, B subunit [Haloterrigena turkmenica
           DSM 5511]
 gi|284014057|gb|ADB60008.1| NADH-quinone oxidoreductase, B subunit [Haloterrigena turkmenica
           DSM 5511]
          Length = 235

 Score =  209 bits (531), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 80/172 (46%), Positives = 112/172 (65%), Gaps = 2/172 (1%)

Query: 9   KIISGQSSCSLEKVDADF-SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAV 67
                + S   E  D  F S++        F++T  D+ + W R  S+  + FG+ACC++
Sbjct: 16  PSTDTRDSRIGEGPDDRFNSKLREAFGSTPFILTKFDKFMNWVRGNSMFMLQFGIACCSI 75

Query: 68  EMMQASMPRYDLERFGF-APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISM 126
           EMM     ++DL+RFG   PRASPRQ+DVMIV GT+ +K    ++RVYDQMPEP++V+ M
Sbjct: 76  EMMHTYAIKHDLDRFGAGVPRASPRQADVMIVPGTIVSKFGPRMKRVYDQMPEPKFVVGM 135

Query: 127 GSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           GSC   GG +   Y+VV+G + I+PVDI+VPGCPP  EAL+YGI  LQ++IR
Sbjct: 136 GSCTISGGPFQEGYNVVKGAEEIIPVDIHVPGCPPRPEALVYGIAKLQERIR 187


>gi|397899|emb|CAA48361.1| NADH dehydrogenase I, subunit nuoB [Escherichia coli]
          Length = 220

 Score =  209 bits (531), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 74/169 (43%), Positives = 107/169 (63%), Gaps = 3/169 (1%)

Query: 14  QSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQAS 73
                L+K +     +  E+ +K   +  ++ +V W R  S+    FGL+CC VEM+   
Sbjct: 14  NDRYPLQKQEIVTDPLEQEV-NKNVFMGKLNDMVNWGRKNSIWPYNFGLSCCYVEMVTLF 72

Query: 74  MPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANG 132
              +D+ RFG    RASPRQ+D+M+VAGT   KMA  ++R+YDQM EP++VISMG+CAN 
Sbjct: 73  TAVHDVARFGAEVLRASPRQADLMVVAGTCFTKMAPVIQRLYDQMLEPKWVISMGACANS 132

Query: 133 GGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
           GG Y   YSVV+G D+ +PVD+Y+PGCPP  EA +  ++LLQ+ I +  
Sbjct: 133 GGMY-DIYSVVQGVDKFIPVDVYIPGCPPRPEAYMQALMLLQESIGKER 180


>gi|302559060|ref|ZP_07311402.1| NADH dehydrogenase I, 20 kDa subunit [Streptomyces griseoflavus
           Tu4000]
 gi|302476678|gb|EFL39771.1| NADH dehydrogenase I, 20 kDa subunit [Streptomyces griseoflavus
           Tu4000]
          Length = 205

 Score =  209 bits (531), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 84/177 (47%), Positives = 114/177 (64%), Gaps = 10/177 (5%)

Query: 5   TVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLAC 64
            VN   ++G       K     +R++ E          +  ++ W R  SL    FGLAC
Sbjct: 2   DVNPAAVAGPVPLPEPKRLGALARLAPE---------PMKVVLNWGRRYSLWVFNFGLAC 52

Query: 65  CAVEMMQASMPRYDLERFGFAPR-ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYV 123
           CA+E + ASM R+D  R G  P    PRQ+D+M+V+GT+T+KMA A++R+Y+QMPEP+YV
Sbjct: 53  CAIEFIAASMARHDFIRLGVIPFAPGPRQADLMVVSGTVTDKMAPAVKRLYEQMPEPKYV 112

Query: 124 ISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           IS G+C+N GG Y  SYSV +G D+I+PVD+YVPGCPP  EAL+ GIL LQ+KI R 
Sbjct: 113 ISFGACSNCGGPYWDSYSVTKGVDQIIPVDVYVPGCPPRPEALLQGILKLQEKIARE 169


>gi|328884356|emb|CCA57595.1| NADH-ubiquinone oxidoreductase chain B [Streptomyces venezuelae
           ATCC 10712]
          Length = 193

 Score =  209 bits (531), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 79/136 (58%), Positives = 102/136 (75%), Gaps = 1/136 (0%)

Query: 46  LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR-ASPRQSDVMIVAGTLTN 104
           ++ W R  SL    FGLACCA+E + ASM R+D  R G  P    PRQ+D+MIV+GT+T+
Sbjct: 29  VLNWGRRYSLWVFNFGLACCAIEFIAASMARHDFIRLGVIPFAPGPRQADLMIVSGTVTD 88

Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164
           KMA A++R+Y+QMPEP+YVIS G+C+N GG Y  SYSV +G D+I+PVD+YVPGCPP  E
Sbjct: 89  KMAPAVKRLYEQMPEPKYVISFGACSNCGGPYWDSYSVTKGVDQIIPVDVYVPGCPPRPE 148

Query: 165 ALIYGILLLQKKIRRV 180
           AL+ GIL LQ+KI R 
Sbjct: 149 ALLQGILKLQEKIARE 164


>gi|154795228|ref|NP_848064.3| NADH dehydrogenase subunit K [Adiantum capillus-veneris]
          Length = 223

 Score =  209 bits (531), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 67/149 (44%), Positives = 98/149 (65%), Gaps = 1/149 (0%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
                 + S+     W+R  SL  + +G +CC +E       R+D +R+G  PR+SPRQ+
Sbjct: 10  MSDSIFMASISDFSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 69

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGCDRIVPV 152
           D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++PV
Sbjct: 70  DLIVTAGTITMKMAPSLIRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 129

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVG 181
           DIY+PGCPP  EA++  +  L+KKI R  
Sbjct: 130 DIYLPGCPPKPEAIMDAVTKLRKKIARNR 158


>gi|269794074|ref|YP_003313529.1| NADH dehydrogenase subunit B [Sanguibacter keddieii DSM 10542]
 gi|269096259|gb|ACZ20695.1| NADH dehydrogenase subunit B [Sanguibacter keddieii DSM 10542]
          Length = 183

 Score =  209 bits (531), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 84/148 (56%), Positives = 110/148 (74%), Gaps = 2/148 (1%)

Query: 32  EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASP 90
           E    GFL+T+V+ L  + R GSL  +TFGLACCA+EMM A   R+DL RFG    RASP
Sbjct: 4   EEAPSGFLLTTVEDLAGYFRKGSLWPVTFGLACCAIEMMAAGASRFDLSRFGMEVFRASP 63

Query: 91  RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150
           RQ+D+MIVAG ++ KMA  +R+VYDQMPEP++V+SMG CA+ GG ++  Y++V+G D IV
Sbjct: 64  RQADLMIVAGRVSQKMAPVVRQVYDQMPEPKWVLSMGVCASSGGMFNN-YAIVQGVDHIV 122

Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIR 178
           PVDIY+PGCPP  E LI  IL L ++I+
Sbjct: 123 PVDIYLPGCPPRPEMLINSILALHQQIQ 150


>gi|307822802|ref|ZP_07653033.1| NADH-quinone oxidoreductase, B subunit [Methylobacter tundripaludum
           SV96]
 gi|307736406|gb|EFO07252.1| NADH-quinone oxidoreductase, B subunit [Methylobacter tundripaludum
           SV96]
          Length = 212

 Score =  208 bits (530), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 74/168 (44%), Positives = 107/168 (63%), Gaps = 2/168 (1%)

Query: 15  SSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASM 74
           +    +       +   E   + FL   ++ +V W ++ S+    FGL+CC VEM  A  
Sbjct: 6   TKAETDPAPQSGQQTYEEALRRNFLFARLEDMVAWGQSNSVWPFNFGLSCCYVEMATAFT 65

Query: 75  PRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGG 133
            R+D+ RFG    R SPRQ+D+++++GT+  KMA  ++R+YDQ+ EPR+VISMGSCAN G
Sbjct: 66  SRHDIARFGSEVIRGSPRQADLIVISGTVFRKMAPVVKRLYDQLLEPRWVISMGSCANSG 125

Query: 134 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
           G Y   YSVV+G D+ +PVD+YVPGCPP  EAL+ G++LLQ  I +  
Sbjct: 126 GMY-DIYSVVQGVDKFLPVDVYVPGCPPRPEALLQGLMLLQDAIGKER 172


>gi|260887648|ref|ZP_05898911.1| NADH dehydrogenase I, B subunit [Selenomonas sputigena ATCC 35185]
 gi|330838007|ref|YP_004412587.1| NADH-quinone oxidoreductase, B subunit [Selenomonas sputigena ATCC
           35185]
 gi|260862664|gb|EEX77164.1| NADH dehydrogenase I, B subunit [Selenomonas sputigena ATCC 35185]
 gi|329745771|gb|AEB99127.1| NADH-quinone oxidoreductase, B subunit [Selenomonas sputigena ATCC
           35185]
          Length = 169

 Score =  208 bits (530), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 75/157 (47%), Positives = 106/157 (67%), Gaps = 1/157 (0%)

Query: 29  ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PR 87
           I      +  +VTSVD +  WAR+ S+  +  GLACC++EMM  +  R+DL RFG+   R
Sbjct: 6   IVPAALRENVIVTSVDAVFKWARSRSIWPLASGLACCSIEMMATAASRFDLARFGYEVFR 65

Query: 88  ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCD 147
           A PRQ+D++IVAGTLT KM   L R+Y++MPEP+YVI+MG+C   GG +  SY+ V+  D
Sbjct: 66  ACPRQADLLIVAGTLTWKMTPPLIRLYEEMPEPKYVIAMGNCNIHGGPFTDSYATVKCLD 125

Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
            ++PVD+Y+PGCPP  EALI  ++ L+ KI+     K
Sbjct: 126 EVLPVDLYLPGCPPRPEALIDAMIKLRNKIQHPELAK 162


>gi|82658723|gb|ABB88530.1| menaquinone oxidoreductase [Streptomyces sp. Eco86]
          Length = 184

 Score =  208 bits (530), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 82/149 (55%), Positives = 105/149 (70%), Gaps = 2/149 (1%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89
            E    GFL+++V+Q   W R  S+   TFGLACCA E+M A   RYDL RFG    R S
Sbjct: 4   EESLPSGFLLSTVEQAAGWVRKASVFPATFGLACCAFELMAAGAGRYDLARFGMEVFRGS 63

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQ+D+MIVAG ++ KMA  LR++YDQMP P++VISMG CA+ GG ++  Y++V+G D I
Sbjct: 64  PRQADLMIVAGRVSQKMAPVLRQIYDQMPNPKWVISMGVCASSGGMFNN-YAIVQGVDHI 122

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           VPVDIY+PGCPP  E L+  IL L +KIR
Sbjct: 123 VPVDIYLPGCPPRPEMLMDAILKLHEKIR 151


>gi|13541946|ref|NP_111634.1| NADH dehydrogenase subunit B [Thermoplasma volcanium GSS1]
          Length = 157

 Score =  208 bits (530), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 85/151 (56%), Positives = 107/151 (70%), Gaps = 1/151 (0%)

Query: 29  ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APR 87
           +  +    G + T+V+Q   WAR+ SL  +TFGLACCA+EMM       D+ RFG    R
Sbjct: 2   VEIKTGDVGIVTTTVEQAYEWARSNSLWPLTFGLACCAIEMMAIQASDMDISRFGSEIFR 61

Query: 88  ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCD 147
            SPRQSD+MIV+GT+T KMA  +RR+YD+MP P+YVI+ G C   GG Y+  YSVV G D
Sbjct: 62  NSPRQSDLMIVSGTVTKKMAPRVRRIYDEMPYPKYVIAQGVCVIQGGPYNQGYSVVLGVD 121

Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           ++VPVD+YVPGCPPT EAL  GI+LLQKKIR
Sbjct: 122 KVVPVDVYVPGCPPTPEALTNGIILLQKKIR 152


>gi|82777695|ref|YP_404044.1| NADH dehydrogenase subunit B [Shigella dysenteriae Sd197]
 gi|309785009|ref|ZP_07679642.1| NADH-quinone oxidoreductase, B subunit [Shigella dysenteriae 1617]
 gi|123562059|sp|Q32DQ2|NUOB_SHIDS RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|81241843|gb|ABB62553.1| NADH dehydrogenase I chain B [Shigella dysenteriae Sd197]
 gi|308927379|gb|EFP72853.1| NADH-quinone oxidoreductase, B subunit [Shigella dysenteriae 1617]
          Length = 220

 Score =  208 bits (530), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 74/169 (43%), Positives = 108/169 (63%), Gaps = 3/169 (1%)

Query: 14  QSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQAS 73
                L+K +     +  E+ +K   +  ++ +V W R  S+    FGL+CC VEM+ + 
Sbjct: 14  NDRYPLQKQEIVTDPLEQEV-NKNVFMGKLNDMVNWGRKNSIWPYNFGLSCCYVEMVTSF 72

Query: 74  MPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANG 132
              +D+ RFG    RASPRQ+D+M+VAGT   KMA  ++R+YDQM EP++VISMG+CAN 
Sbjct: 73  TAVHDVARFGAEVLRASPRQADLMVVAGTCFTKMAPVIQRLYDQMLEPKWVISMGACANS 132

Query: 133 GGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
           GG Y   YSVV+G D+ +PVD+Y+PGCPP  EA +  ++LLQ+ I +  
Sbjct: 133 GGMY-DIYSVVQGVDKFIPVDVYIPGCPPRPEAYMQALMLLQESIAKER 180


>gi|294056096|ref|YP_003549754.1| NADH-quinone oxidoreductase, B subunit [Coraliomargarita
           akajimensis DSM 45221]
 gi|293615429|gb|ADE55584.1| NADH-quinone oxidoreductase, B subunit [Coraliomargarita
           akajimensis DSM 45221]
          Length = 183

 Score =  208 bits (530), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 77/152 (50%), Positives = 103/152 (67%), Gaps = 2/152 (1%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQ 92
                +VT  D ++ W R  S+  M  GLACCA+E+M A   R+D+ RFG    R SPRQ
Sbjct: 14  VEGEVIVTQADAVINWIRKHSVWPMPMGLACCAIELMAAGGSRFDISRFGMEVMRFSPRQ 73

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           +D MIVAGT+T KMA  +RR+Y+QM EP++V++MG+CA+ GG Y  SYS ++G DRIVPV
Sbjct: 74  ADCMIVAGTVTYKMAEVVRRIYEQMAEPKWVVAMGACASSGGMYR-SYSTLQGVDRIVPV 132

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           D+Y+ GCPP  EAL+  ++ LQ KI R    K
Sbjct: 133 DVYISGCPPRPEALLDAMIKLQDKIGRERAFK 164


>gi|145225061|ref|YP_001135739.1| NADH dehydrogenase subunit B [Mycobacterium gilvum PYR-GCK]
 gi|315445430|ref|YP_004078309.1| NADH dehydrogenase subunit B [Mycobacterium sp. Spyr1]
 gi|238065177|sp|A4TDB9|NUOB_MYCGI RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|145217547|gb|ABP46951.1| NADH dehydrogenase subunit B [Mycobacterium gilvum PYR-GCK]
 gi|315263733|gb|ADU00475.1| NADH dehydrogenase subunit B [Mycobacterium sp. Spyr1]
          Length = 184

 Score =  208 bits (530), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 76/151 (50%), Positives = 110/151 (72%), Gaps = 2/151 (1%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89
            E    G L+++V+++  + R GSL   TFGLACCA+EMM  + PR+D+ RFG     A+
Sbjct: 4   EEKLPGGILLSTVEKVAGYVRKGSLWPATFGLACCAIEMMATAGPRFDISRFGMERFSAT 63

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQ+D+MIVAG ++ KMA  LR++YDQM EP++V++MG CA+ GG ++  Y+VV+G D +
Sbjct: 64  PRQADLMIVAGRVSQKMAPVLRQIYDQMAEPKWVLAMGVCASSGGMFNN-YAVVQGVDHV 122

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           VPVDIY+PGCPP  E L++ IL L  KI+++
Sbjct: 123 VPVDIYLPGCPPRPEMLLHAILKLHDKIQQM 153


>gi|297192751|ref|ZP_06910149.1| NADH dehydrogenase subunit I B [Streptomyces pristinaespiralis ATCC
           25486]
 gi|297151481|gb|EDY64969.2| NADH dehydrogenase subunit I B [Streptomyces pristinaespiralis ATCC
           25486]
          Length = 232

 Score =  208 bits (530), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 87/185 (47%), Positives = 117/185 (63%), Gaps = 7/185 (3%)

Query: 1   MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVT----SVDQLVTWARTGSLM 56
           M +T  + +  S  S+ +     A    +  E    G L       +  ++ W R  SL 
Sbjct: 1   MDVTPTSNQTPSPASTPAPASTPA--PELLPEPRRLGALARLAPEPMKVILNWGRRYSLW 58

Query: 57  WMTFGLACCAVEMMQASMPRYDLERFGFAPR-ASPRQSDVMIVAGTLTNKMASALRRVYD 115
              FGLACCA+E + ASM R+D  R G  P    PRQ+D+MIV+GT+T+KMA A++R+Y+
Sbjct: 59  VFNFGLACCAIEFIAASMARHDFIRLGVIPFAPGPRQADLMIVSGTVTDKMAPAVKRLYE 118

Query: 116 QMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175
           QMPEP+YVIS G+C+N GG Y  SYSV +G D+I+PVD+YVPGCPP  EAL+ GIL LQ+
Sbjct: 119 QMPEPKYVISFGACSNCGGPYWDSYSVTKGVDQIIPVDVYVPGCPPRPEALLQGILKLQE 178

Query: 176 KIRRV 180
           KI R 
Sbjct: 179 KIARE 183


>gi|196231863|ref|ZP_03130719.1| NADH-quinone oxidoreductase, B subunit [Chthoniobacter flavus
           Ellin428]
 gi|196223985|gb|EDY18499.1| NADH-quinone oxidoreductase, B subunit [Chthoniobacter flavus
           Ellin428]
          Length = 178

 Score =  208 bits (530), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 76/152 (50%), Positives = 108/152 (71%), Gaps = 2/152 (1%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQ 92
                ++T +D  + W R  SL  M  GLACCA+E+M A   R+D+ RFG    R SPRQ
Sbjct: 13  IEGNVIITQLDAAMNWMRKNSLWPMPMGLACCAIELMAAGASRFDIARFGAEVMRFSPRQ 72

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           SDVMIVAGT+T KMA A++R++DQMPEP++ I+MG+CA+ GG Y  SY+V++G D+++PV
Sbjct: 73  SDVMIVAGTVTYKMALAVKRIWDQMPEPKWCIAMGACASSGGMYR-SYAVLQGIDQLIPV 131

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           D+Y+ GCPP  EAL+ G++ LQ+KI     ++
Sbjct: 132 DVYISGCPPRPEALLEGLMKLQRKIETEPALR 163


>gi|189218226|ref|YP_001938868.1| NADH dehydrogenase subunit B [Methylacidiphilum infernorum V4]
 gi|238065168|sp|B3DXN5|NUOB_METI4 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|189185084|gb|ACD82269.1| NADH:ubiquinone oxidoreductase 20 kD subunit or related Fe-S
           oxidoreductase [Methylacidiphilum infernorum V4]
          Length = 170

 Score =  208 bits (530), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 76/148 (51%), Positives = 110/148 (74%), Gaps = 2/148 (1%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVM 96
            +VT +D  + W R  SL  M  GLACCA+E+M ++  R+D+ RFG    R SPRQ DVM
Sbjct: 17  VVVTRLDAAINWMRKNSLWPMPMGLACCAIELMASACARFDISRFGAEVMRFSPRQCDVM 76

Query: 97  IVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV 156
           IVAGT+T KMA +++R+Y+QMP+P++VISMG+CA+ GG Y  SYSV++G D+++PVD+YV
Sbjct: 77  IVAGTVTYKMAYSVKRIYEQMPDPKWVISMGACASSGGMYR-SYSVLQGIDQLIPVDVYV 135

Query: 157 PGCPPTAEALIYGILLLQKKIRRVGNVK 184
            GCPP  EAL+  ++ LQ+KI +  +++
Sbjct: 136 SGCPPRPEALLDALIKLQEKIDKEASLR 163


>gi|296268308|ref|YP_003650940.1| NADH-quinone oxidoreductase subunit B [Thermobispora bispora DSM
           43833]
 gi|296091095|gb|ADG87047.1| NADH-quinone oxidoreductase, B subunit [Thermobispora bispora DSM
           43833]
          Length = 170

 Score =  208 bits (529), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 78/133 (58%), Positives = 104/133 (78%), Gaps = 1/133 (0%)

Query: 46  LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS-PRQSDVMIVAGTLTN 104
           ++ W R  SL    FGLACCA+E +  SM R+D  RFG  P A+ PRQ+D+MIV+GT+T+
Sbjct: 23  VLNWGRRYSLWVFNFGLACCAIEFIATSMSRHDFIRFGVIPFANGPRQADLMIVSGTVTD 82

Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164
           KMA A++R+Y+QMP+P+YVIS G+C+N GG Y  SYSV +G D+I+PVD+YVPGCPP  E
Sbjct: 83  KMAPAVKRLYEQMPDPKYVISFGACSNCGGPYWDSYSVTKGVDQIIPVDVYVPGCPPRPE 142

Query: 165 ALIYGILLLQKKI 177
           AL++GIL LQ+KI
Sbjct: 143 ALLHGILKLQEKI 155


>gi|283786355|ref|YP_003366220.1| NADH-quinone oxidoreductase subunit B [Citrobacter rodentium
           ICC168]
 gi|282949809|emb|CBG89432.1| NADH-quinone oxidoreductase subunit B [Citrobacter rodentium
           ICC168]
          Length = 220

 Score =  208 bits (529), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 75/169 (44%), Positives = 106/169 (62%), Gaps = 3/169 (1%)

Query: 14  QSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQAS 73
                L+K +     +  E+ +K   +  +  LV W R  S+    FGL+CC VEM+ + 
Sbjct: 14  NDRYPLQKQEIVTDPLEQEV-NKNVFMGKLHDLVNWGRKNSIWPYNFGLSCCYVEMVTSF 72

Query: 74  MPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANG 132
              +D+ RFG    RASPRQ+D+M+VAGT   KMA  ++R+YDQM EP++VISMG+CAN 
Sbjct: 73  TAVHDVARFGAEVLRASPRQADLMVVAGTCFTKMAPVIQRLYDQMLEPKWVISMGACANS 132

Query: 133 GGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
           GG Y   YSVV+G D+ +PVD+Y+PGCPP  EA +  ++LLQ  I +  
Sbjct: 133 GGMY-DIYSVVQGVDKFIPVDVYIPGCPPRPEAYMQALMLLQDSIGKER 180


>gi|15789834|ref|NP_279658.1| NADH dehydrogenase/oxidoreductase [Halobacterium sp. NRC-1]
 gi|169235555|ref|YP_001688755.1| NADH dehydrogenase-like complex subunit B [Halobacterium salinarum
           R1]
 gi|10580226|gb|AAG19138.1| NADH dehydrogenase/oxidoreductase [Halobacterium sp. NRC-1]
 gi|167726621|emb|CAP13406.1| NADH dehydrogenase-like complex subunit B [Halobacterium salinarum
           R1]
          Length = 235

 Score =  208 bits (529), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 77/178 (43%), Positives = 119/178 (66%), Gaps = 2/178 (1%)

Query: 2   GLTTVNQKIISGQSSCSLEKVDADF-SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTF 60
            +T  +  + S + +   + VD  F SR+        F++T  D+ + W R  S+  + F
Sbjct: 9   SITDTSDPLTSTRDARMGDGVDDRFNSRLREAFGSTPFILTKFDKFMNWVRGSSMFMLQF 68

Query: 61  GLACCAVEMMQASMPRYDLERFGF-APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119
           G+ACC++EMM     ++DL+RF    PRASPRQ+DVMIV GT+ +K A  ++RVYDQMPE
Sbjct: 69  GIACCSIEMMHTYSVKHDLDRFHAGVPRASPRQADVMIVPGTIVSKFAPRMKRVYDQMPE 128

Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
           P++V++MG+C+  GG +   Y+VV+G + ++PVDI++PGCPP  EAL+YG+  LQ++I
Sbjct: 129 PKFVVNMGNCSTSGGPFQEGYNVVKGAEEVIPVDIHIPGCPPRPEALVYGVAKLQERI 186


>gi|15832425|ref|NP_311198.1| NADH dehydrogenase subunit B [Escherichia coli O157:H7 str. Sakai]
 gi|16130222|ref|NP_416790.1| NADH:ubiquinone oxidoreductase, chain B [Escherichia coli str. K-12
           substr. MG1655]
 gi|24113659|ref|NP_708169.1| NADH dehydrogenase subunit B [Shigella flexneri 2a str. 301]
 gi|26248674|ref|NP_754714.1| NADH dehydrogenase subunit B [Escherichia coli CFT073]
 gi|30063713|ref|NP_837884.1| NADH dehydrogenase subunit B [Shigella flexneri 2a str. 2457T]
 gi|74312805|ref|YP_311224.1| NADH dehydrogenase subunit B [Shigella sonnei Ss046]
 gi|82544765|ref|YP_408712.1| NADH dehydrogenase subunit B [Shigella boydii Sb227]
 gi|89109105|ref|AP_002885.1| NADH:ubiquinone oxidoreductase, chain B [Escherichia coli str. K-12
           substr. W3110]
 gi|91211579|ref|YP_541565.1| NADH dehydrogenase subunit B [Escherichia coli UTI89]
 gi|110642491|ref|YP_670221.1| NADH dehydrogenase subunit B [Escherichia coli 536]
 gi|110806250|ref|YP_689770.1| NADH dehydrogenase subunit B [Shigella flexneri 5 str. 8401]
 gi|117624476|ref|YP_853389.1| NADH dehydrogenase subunit B [Escherichia coli APEC O1]
 gi|157155733|ref|YP_001463630.1| NADH dehydrogenase subunit B [Escherichia coli E24377A]
 gi|157161775|ref|YP_001459093.1| NADH dehydrogenase subunit B [Escherichia coli HS]
 gi|168748136|ref|ZP_02773158.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli O157:H7
           str. EC4113]
 gi|168755039|ref|ZP_02780046.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli O157:H7
           str. EC4401]
 gi|168761274|ref|ZP_02786281.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli O157:H7
           str. EC4501]
 gi|168767913|ref|ZP_02792920.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli O157:H7
           str. EC4486]
 gi|168772987|ref|ZP_02797994.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli O157:H7
           str. EC4196]
 gi|168780142|ref|ZP_02805149.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli O157:H7
           str. EC4076]
 gi|168787194|ref|ZP_02812201.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli O157:H7
           str. EC869]
 gi|168798457|ref|ZP_02823464.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli O157:H7
           str. EC508]
 gi|170019404|ref|YP_001724358.1| NADH dehydrogenase subunit B [Escherichia coli ATCC 8739]
 gi|170081904|ref|YP_001731224.1| NADH:ubiquinone oxidoreductase, chain B [Escherichia coli str. K-12
           substr. DH10B]
 gi|170681065|ref|YP_001744485.1| NADH dehydrogenase subunit B [Escherichia coli SMS-3-5]
 gi|170767483|ref|ZP_02901936.1| NADH-quinone oxidoreductase, B subunit [Escherichia albertii
           TW07627]
 gi|187732051|ref|YP_001881108.1| NADH dehydrogenase subunit B [Shigella boydii CDC 3083-94]
 gi|188491795|ref|ZP_02999065.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli 53638]
 gi|191166481|ref|ZP_03028311.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli B7A]
 gi|191169994|ref|ZP_03031548.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli F11]
 gi|193062269|ref|ZP_03043364.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli E22]
 gi|193068244|ref|ZP_03049208.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli E110019]
 gi|194427226|ref|ZP_03059777.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli B171]
 gi|194433374|ref|ZP_03065654.1| NADH-quinone oxidoreductase, B subunit [Shigella dysenteriae 1012]
 gi|194435968|ref|ZP_03068070.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli 101-1]
 gi|195935664|ref|ZP_03081046.1| NADH dehydrogenase subunit B [Escherichia coli O157:H7 str. EC4024]
 gi|208808363|ref|ZP_03250700.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli O157:H7
           str. EC4206]
 gi|208814079|ref|ZP_03255408.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli O157:H7
           str. EC4045]
 gi|208821251|ref|ZP_03261571.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli O157:H7
           str. EC4042]
 gi|209400872|ref|YP_002271696.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli O157:H7
           str. EC4115]
 gi|209919735|ref|YP_002293819.1| NADH dehydrogenase subunit B [Escherichia coli SE11]
 gi|215487500|ref|YP_002329931.1| NADH dehydrogenase subunit B [Escherichia coli O127:H6 str.
           E2348/69]
 gi|217327914|ref|ZP_03443997.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli O157:H7
           str. TW14588]
 gi|218548264|ref|YP_002382055.1| NADH dehydrogenase subunit B [Escherichia fergusonii ATCC 35469]
 gi|218554843|ref|YP_002387756.1| NADH dehydrogenase subunit B [Escherichia coli IAI1]
 gi|218559200|ref|YP_002392113.1| NADH dehydrogenase subunit B [Escherichia coli S88]
 gi|218690447|ref|YP_002398659.1| NADH dehydrogenase subunit B [Escherichia coli ED1a]
 gi|218695886|ref|YP_002403553.1| NADH dehydrogenase subunit B [Escherichia coli 55989]
 gi|218700761|ref|YP_002408390.1| NADH dehydrogenase subunit B [Escherichia coli IAI39]
 gi|218705817|ref|YP_002413336.1| NADH dehydrogenase subunit B [Escherichia coli UMN026]
 gi|227887343|ref|ZP_04005148.1| NADH dehydrogenase subunit B [Escherichia coli 83972]
 gi|237704761|ref|ZP_04535242.1| trifunctional NADH dehydrogenase I subunit B/C/D [Escherichia sp.
           3_2_53FAA]
 gi|238901462|ref|YP_002927258.1| NADH:ubiquinone oxidoreductase, chain B [Escherichia coli BW2952]
 gi|253772791|ref|YP_003035622.1| NADH dehydrogenase subunit B [Escherichia coli 'BL21-Gold(DE3)pLysS
           AG']
 gi|254162296|ref|YP_003045404.1| NADH dehydrogenase subunit B [Escherichia coli B str. REL606]
 gi|254794179|ref|YP_003079016.1| NADH dehydrogenase subunit B [Escherichia coli O157:H7 str.
           TW14359]
 gi|256017557|ref|ZP_05431422.1| NADH dehydrogenase subunit B [Shigella sp. D9]
 gi|256022029|ref|ZP_05435894.1| NADH dehydrogenase subunit B [Escherichia sp. 4_1_40B]
 gi|260844874|ref|YP_003222652.1| NADH:ubiquinone oxidoreductase, chain B [Escherichia coli O103:H2
           str. 12009]
 gi|260856331|ref|YP_003230222.1| NADH:ubiquinone oxidoreductase, chain B [Escherichia coli O26:H11
           str. 11368]
 gi|260869010|ref|YP_003235412.1| NADH:ubiquinone oxidoreductase, chain B [Escherichia coli O111:H-
           str. 11128]
 gi|261223259|ref|ZP_05937540.1| NADH:ubiquinone oxidoreductase, chain B [Escherichia coli O157:H7
           str. FRIK2000]
 gi|261259191|ref|ZP_05951724.1| NADH:ubiquinone oxidoreductase, chain B [Escherichia coli O157:H7
           str. FRIK966]
 gi|291283528|ref|YP_003500346.1| NADH-quinone oxidoreductase subunit B [Escherichia coli O55:H7 str.
           CB9615]
 gi|293405753|ref|ZP_06649745.1| NADH-quinone oxidoreductase subunit B [Escherichia coli FVEC1412]
 gi|293410647|ref|ZP_06654223.1| NADH dehydrogenase subunit B [Escherichia coli B354]
 gi|293415580|ref|ZP_06658223.1| NADH-quinone oxidoreductase subunit B [Escherichia coli B185]
 gi|293446624|ref|ZP_06663046.1| NADH dehydrogenase I subunit B [Escherichia coli B088]
 gi|297517328|ref|ZP_06935714.1| NADH dehydrogenase subunit B [Escherichia coli OP50]
 gi|298381436|ref|ZP_06991035.1| NADH-quinone oxidoreductase subunit B [Escherichia coli FVEC1302]
 gi|300818112|ref|ZP_07098324.1| NADH dehydrogenase subunit B [Escherichia coli MS 107-1]
 gi|300822158|ref|ZP_07102300.1| NADH dehydrogenase subunit B [Escherichia coli MS 119-7]
 gi|300896961|ref|ZP_07115442.1| NADH dehydrogenase subunit B [Escherichia coli MS 198-1]
 gi|300903672|ref|ZP_07121588.1| NADH dehydrogenase subunit B [Escherichia coli MS 84-1]
 gi|300924546|ref|ZP_07140510.1| NADH dehydrogenase subunit B [Escherichia coli MS 182-1]
 gi|300931360|ref|ZP_07146691.1| NADH dehydrogenase subunit B [Escherichia coli MS 187-1]
 gi|300936852|ref|ZP_07151741.1| NADH dehydrogenase subunit B [Escherichia coli MS 21-1]
 gi|300948569|ref|ZP_07162662.1| NADH dehydrogenase subunit B [Escherichia coli MS 116-1]
 gi|300956453|ref|ZP_07168742.1| NADH dehydrogenase subunit B [Escherichia coli MS 175-1]
 gi|300981071|ref|ZP_07175343.1| NADH dehydrogenase subunit B [Escherichia coli MS 200-1]
 gi|300983382|ref|ZP_07176566.1| NADH dehydrogenase subunit B [Escherichia coli MS 45-1]
 gi|301024085|ref|ZP_07187799.1| NADH dehydrogenase subunit B [Escherichia coli MS 69-1]
 gi|301049040|ref|ZP_07196025.1| NADH dehydrogenase subunit B [Escherichia coli MS 185-1]
 gi|301303254|ref|ZP_07209379.1| NADH dehydrogenase subunit B [Escherichia coli MS 124-1]
 gi|301328779|ref|ZP_07221827.1| NADH dehydrogenase subunit B [Escherichia coli MS 78-1]
 gi|301647616|ref|ZP_07247412.1| NADH dehydrogenase subunit B [Escherichia coli MS 146-1]
 gi|306814602|ref|ZP_07448764.1| NADH dehydrogenase subunit B [Escherichia coli NC101]
 gi|307138951|ref|ZP_07498307.1| NADH dehydrogenase subunit B [Escherichia coli H736]
 gi|307311153|ref|ZP_07590797.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli W]
 gi|309793166|ref|ZP_07687594.1| NADH dehydrogenase subunit B [Escherichia coli MS 145-7]
 gi|312967585|ref|ZP_07781800.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli 2362-75]
 gi|312973454|ref|ZP_07787626.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli 1827-70]
 gi|331642925|ref|ZP_08344060.1| NADH dehydrogenase I subunit B [Escherichia coli H736]
 gi|331647942|ref|ZP_08349034.1| NADH dehydrogenase I subunit B [Escherichia coli M605]
 gi|331653729|ref|ZP_08354730.1| NADH dehydrogenase I subunit B [Escherichia coli M718]
 gi|331658369|ref|ZP_08359331.1| NADH dehydrogenase I subunit B [Escherichia coli TA206]
 gi|331663802|ref|ZP_08364712.1| NADH dehydrogenase I subunit B [Escherichia coli TA143]
 gi|331668985|ref|ZP_08369833.1| NADH dehydrogenase I subunit B [Escherichia coli TA271]
 gi|331673790|ref|ZP_08374553.1| NADH dehydrogenase I subunit B [Escherichia coli TA280]
 gi|331678233|ref|ZP_08378908.1| NADH dehydrogenase I subunit B [Escherichia coli H591]
 gi|331683958|ref|ZP_08384554.1| NADH dehydrogenase I subunit B [Escherichia coli H299]
 gi|332278567|ref|ZP_08390980.1| NADH:ubiquinone oxidoreductase chain B [Shigella sp. D9]
 gi|84028744|sp|P0AFC9|NUOB_ECO57 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B; AltName: Full=NUO2
 gi|84028745|sp|P0AFC8|NUOB_ECOL6 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B; AltName: Full=NUO2
 gi|84028746|sp|P0AFC7|NUOB_ECOLI RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B; AltName: Full=NUO2
 gi|84028747|sp|P0AFD0|NUOB_SHIFL RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|122423113|sp|Q1R9D0|NUOB_ECOUT RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|122957324|sp|Q0T2K0|NUOB_SHIF8 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|123147875|sp|Q0TFF9|NUOB_ECOL5 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|123559142|sp|Q31YH4|NUOB_SHIBS RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|123616691|sp|Q3YZS3|NUOB_SHISS RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|238065125|sp|A7ZPA1|NUOB_ECO24 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|238065126|sp|B7UFU5|NUOB_ECO27 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|238065127|sp|B7MG51|NUOB_ECO45 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|238065128|sp|B7LBP8|NUOB_ECO55 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|238065129|sp|B5YXS7|NUOB_ECO5E RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|238065130|sp|B7NNW6|NUOB_ECO7I RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|238065131|sp|B7MXW6|NUOB_ECO81 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|238065132|sp|B7M5W6|NUOB_ECO8A RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|238065133|sp|B1X8Z9|NUOB_ECODH RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|238065134|sp|A8A2F6|NUOB_ECOHS RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|238065135|sp|A1ADD5|NUOB_ECOK1 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|238065136|sp|B1IXQ5|NUOB_ECOLC RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|238065137|sp|B7N5P9|NUOB_ECOLU RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|238065138|sp|B6I7N7|NUOB_ECOSE RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|238065139|sp|B1LLP0|NUOB_ECOSM RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|238065143|sp|B7LM45|NUOB_ESCF3 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|238065216|sp|B2TW68|NUOB_SHIB3 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|259514662|sp|C4ZUD0|NUOB_ECOBW RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|26109079|gb|AAN81282.1|AE016763_241 NADH dehydrogenase I chain B [Escherichia coli CFT073]
 gi|1788624|gb|AAC75347.1| NADH:ubiquinone oxidoreductase, chain B [Escherichia coli str. K-12
           substr. MG1655]
 gi|13362641|dbj|BAB36594.1| NADH dehydrogenase I chain B [Escherichia coli O157:H7 str. Sakai]
 gi|24052724|gb|AAN43876.1| NADH dehydrogenase I chain B [Shigella flexneri 2a str. 301]
 gi|30041968|gb|AAP17694.1| NADH dehydrogenase I chain B [Shigella flexneri 2a str. 2457T]
 gi|73856282|gb|AAZ88989.1| NADH dehydrogenase I chain B [Shigella sonnei Ss046]
 gi|81246176|gb|ABB66884.1| NADH dehydrogenase I chain B [Shigella boydii Sb227]
 gi|85675345|dbj|BAA16121.2| NADH:ubiquinone oxidoreductase, chain B [Escherichia coli str. K12
           substr. W3110]
 gi|91073153|gb|ABE08034.1| NADH dehydrogenase I chain B [Escherichia coli UTI89]
 gi|110344083|gb|ABG70320.1| NADH dehydrogenase I chain B [Escherichia coli 536]
 gi|110615798|gb|ABF04465.1| NADH dehydrogenase I chain B [Shigella flexneri 5 str. 8401]
 gi|115513600|gb|ABJ01675.1| NADH dehydrogenase subunit B [Escherichia coli APEC O1]
 gi|157067455|gb|ABV06710.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli HS]
 gi|157077763|gb|ABV17471.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli E24377A]
 gi|169754332|gb|ACA77031.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli ATCC 8739]
 gi|169889739|gb|ACB03446.1| NADH:ubiquinone oxidoreductase, chain B [Escherichia coli str. K-12
           substr. DH10B]
 gi|170123817|gb|EDS92748.1| NADH-quinone oxidoreductase, B subunit [Escherichia albertii
           TW07627]
 gi|170518783|gb|ACB16961.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli SMS-3-5]
 gi|187429043|gb|ACD08317.1| NADH-quinone oxidoreductase, B subunit [Shigella boydii CDC
           3083-94]
 gi|187771211|gb|EDU35055.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli O157:H7
           str. EC4196]
 gi|188017366|gb|EDU55488.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli O157:H7
           str. EC4113]
 gi|188486994|gb|EDU62097.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli 53638]
 gi|189001940|gb|EDU70926.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli O157:H7
           str. EC4076]
 gi|189357731|gb|EDU76150.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli O157:H7
           str. EC4401]
 gi|189362998|gb|EDU81417.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli O157:H7
           str. EC4486]
 gi|189368240|gb|EDU86656.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli O157:H7
           str. EC4501]
 gi|189372840|gb|EDU91256.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli O157:H7
           str. EC869]
 gi|189378981|gb|EDU97397.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli O157:H7
           str. EC508]
 gi|190903441|gb|EDV63160.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli B7A]
 gi|190909510|gb|EDV69095.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli F11]
 gi|192931935|gb|EDV84534.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli E22]
 gi|192958523|gb|EDV88962.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli E110019]
 gi|194414847|gb|EDX31118.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli B171]
 gi|194418468|gb|EDX34557.1| NADH-quinone oxidoreductase, B subunit [Shigella dysenteriae 1012]
 gi|194424696|gb|EDX40681.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli 101-1]
 gi|208728164|gb|EDZ77765.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli O157:H7
           str. EC4206]
 gi|208735356|gb|EDZ84043.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli O157:H7
           str. EC4045]
 gi|208741374|gb|EDZ89056.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli O157:H7
           str. EC4042]
 gi|209162272|gb|ACI39705.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli O157:H7
           str. EC4115]
 gi|209765078|gb|ACI80851.1| NADH dehydrogenase I chain B [Escherichia coli]
 gi|209765080|gb|ACI80852.1| NADH dehydrogenase I chain B [Escherichia coli]
 gi|209765082|gb|ACI80853.1| NADH dehydrogenase I chain B [Escherichia coli]
 gi|209765084|gb|ACI80854.1| NADH dehydrogenase I chain B [Escherichia coli]
 gi|209765086|gb|ACI80855.1| NADH dehydrogenase I chain B [Escherichia coli]
 gi|209912994|dbj|BAG78068.1| NADH dehydrogenase I chain B [Escherichia coli SE11]
 gi|215265572|emb|CAS09975.1| NADH: ubiquinone oxidoreductase, chain B [Escherichia coli O127:H6
           str. E2348/69]
 gi|217320281|gb|EEC28706.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli O157:H7
           str. TW14588]
 gi|218352618|emb|CAU98399.1| NADH:ubiquinone oxidoreductase, chain B [Escherichia coli 55989]
 gi|218355805|emb|CAQ88418.1| NADH:ubiquinone oxidoreductase, chain B [Escherichia fergusonii
           ATCC 35469]
 gi|218361611|emb|CAQ99203.1| NADH:ubiquinone oxidoreductase, chain B [Escherichia coli IAI1]
 gi|218365969|emb|CAR03713.1| NADH:ubiquinone oxidoreductase, chain B [Escherichia coli S88]
 gi|218370747|emb|CAR18560.1| NADH:ubiquinone oxidoreductase, chain B [Escherichia coli IAI39]
 gi|218428011|emb|CAR08932.2| NADH:ubiquinone oxidoreductase, chain B [Escherichia coli ED1a]
 gi|218432914|emb|CAR13808.1| NADH:ubiquinone oxidoreductase, chain B [Escherichia coli UMN026]
 gi|222034043|emb|CAP76784.1| NadH-quinone oxidoreductase subunit B [Escherichia coli LF82]
 gi|226901127|gb|EEH87386.1| trifunctional NADH dehydrogenase I subunit B/C/D [Escherichia sp.
           3_2_53FAA]
 gi|227835693|gb|EEJ46159.1| NADH dehydrogenase subunit B [Escherichia coli 83972]
 gi|238861867|gb|ACR63865.1| NADH:ubiquinone oxidoreductase, chain B [Escherichia coli BW2952]
 gi|242377920|emb|CAQ32689.1| NADH:ubiquinone oxidoreductase, chain B, subunit of connecting
           fragment of NADH dehydrogenase I and NADH:ubiquinone
           oxidoreductase I [Escherichia coli BL21(DE3)]
 gi|253323835|gb|ACT28437.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253974197|gb|ACT39868.1| NADH dehydrogenase subunit B [Escherichia coli B str. REL606]
 gi|253978364|gb|ACT44034.1| NADH dehydrogenase subunit B [Escherichia coli BL21(DE3)]
 gi|254593579|gb|ACT72940.1| NADH:ubiquinone oxidoreductase, chain B [Escherichia coli O157:H7
           str. TW14359]
 gi|257754980|dbj|BAI26482.1| NADH:ubiquinone oxidoreductase, chain B [Escherichia coli O26:H11
           str. 11368]
 gi|257760021|dbj|BAI31518.1| NADH:ubiquinone oxidoreductase, chain B [Escherichia coli O103:H2
           str. 12009]
 gi|257765366|dbj|BAI36861.1| NADH:ubiquinone oxidoreductase, chain B [Escherichia coli O111:H-
           str. 11128]
 gi|260448620|gb|ACX39042.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli DH1]
 gi|281179374|dbj|BAI55704.1| NADH dehydrogenase I chain B [Escherichia coli SE15]
 gi|281601728|gb|ADA74712.1| NADH-quinone oxidoreductase subunit B [Shigella flexneri 2002017]
 gi|284922275|emb|CBG35360.1| NADH-quinone oxidoreductase subunit B [Escherichia coli 042]
 gi|290763401|gb|ADD57362.1| NADH-quinone oxidoreductase subunit B [Escherichia coli O55:H7 str.
           CB9615]
 gi|291323454|gb|EFE62882.1| NADH dehydrogenase I subunit B [Escherichia coli B088]
 gi|291427961|gb|EFF00988.1| NADH-quinone oxidoreductase subunit B [Escherichia coli FVEC1412]
 gi|291433228|gb|EFF06207.1| NADH-quinone oxidoreductase subunit B [Escherichia coli B185]
 gi|291471115|gb|EFF13599.1| NADH dehydrogenase subunit B [Escherichia coli B354]
 gi|294490294|gb|ADE89050.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli IHE3034]
 gi|298278878|gb|EFI20392.1| NADH-quinone oxidoreductase subunit B [Escherichia coli FVEC1302]
 gi|300299149|gb|EFJ55534.1| NADH dehydrogenase subunit B [Escherichia coli MS 185-1]
 gi|300307684|gb|EFJ62204.1| NADH dehydrogenase subunit B [Escherichia coli MS 200-1]
 gi|300316723|gb|EFJ66507.1| NADH dehydrogenase subunit B [Escherichia coli MS 175-1]
 gi|300359229|gb|EFJ75099.1| NADH dehydrogenase subunit B [Escherichia coli MS 198-1]
 gi|300396741|gb|EFJ80279.1| NADH dehydrogenase subunit B [Escherichia coli MS 69-1]
 gi|300404328|gb|EFJ87866.1| NADH dehydrogenase subunit B [Escherichia coli MS 84-1]
 gi|300408548|gb|EFJ92086.1| NADH dehydrogenase subunit B [Escherichia coli MS 45-1]
 gi|300419264|gb|EFK02575.1| NADH dehydrogenase subunit B [Escherichia coli MS 182-1]
 gi|300451917|gb|EFK15537.1| NADH dehydrogenase subunit B [Escherichia coli MS 116-1]
 gi|300458039|gb|EFK21532.1| NADH dehydrogenase subunit B [Escherichia coli MS 21-1]
 gi|300460822|gb|EFK24315.1| NADH dehydrogenase subunit B [Escherichia coli MS 187-1]
 gi|300525288|gb|EFK46357.1| NADH dehydrogenase subunit B [Escherichia coli MS 119-7]
 gi|300529256|gb|EFK50318.1| NADH dehydrogenase subunit B [Escherichia coli MS 107-1]
 gi|300841428|gb|EFK69188.1| NADH dehydrogenase subunit B [Escherichia coli MS 124-1]
 gi|300844841|gb|EFK72601.1| NADH dehydrogenase subunit B [Escherichia coli MS 78-1]
 gi|301074243|gb|EFK89049.1| NADH dehydrogenase subunit B [Escherichia coli MS 146-1]
 gi|305851996|gb|EFM52448.1| NADH dehydrogenase subunit B [Escherichia coli NC101]
 gi|306908659|gb|EFN39156.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli W]
 gi|307554349|gb|ADN47124.1| NADH dehydrogenase I chain B [Escherichia coli ABU 83972]
 gi|307626177|gb|ADN70481.1| NADH dehydrogenase subunit B [Escherichia coli UM146]
 gi|308123452|gb|EFO60714.1| NADH dehydrogenase subunit B [Escherichia coli MS 145-7]
 gi|309702599|emb|CBJ01927.1| NADH-quinone oxidoreductase subunit B [Escherichia coli ETEC
           H10407]
 gi|310332049|gb|EFP99284.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli 1827-70]
 gi|312287782|gb|EFR15687.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli 2362-75]
 gi|312946905|gb|ADR27732.1| NADH dehydrogenase subunit B [Escherichia coli O83:H1 str. NRG
           857C]
 gi|313651110|gb|EFS15509.1| NADH-quinone oxidoreductase, B subunit [Shigella flexneri 2a str.
           2457T]
 gi|315061579|gb|ADT75906.1| NADH:ubiquinone oxidoreductase, chain B [Escherichia coli W]
 gi|315136921|dbj|BAJ44080.1| NADH-quinone oxidoreductase subunit B [Escherichia coli DH1]
 gi|315255221|gb|EFU35189.1| NADH dehydrogenase subunit B [Escherichia coli MS 85-1]
 gi|315285913|gb|EFU45351.1| NADH dehydrogenase subunit B [Escherichia coli MS 110-3]
 gi|315292240|gb|EFU51592.1| NADH dehydrogenase subunit B [Escherichia coli MS 153-1]
 gi|315298114|gb|EFU57383.1| NADH dehydrogenase subunit B [Escherichia coli MS 16-3]
 gi|315615556|gb|EFU96188.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli 3431]
 gi|320177169|gb|EFW52181.1| NADH-ubiquinone oxidoreductase chain B [Shigella dysenteriae CDC
           74-1112]
 gi|320178740|gb|EFW53703.1| NADH-ubiquinone oxidoreductase chain B [Shigella boydii ATCC 9905]
 gi|320183382|gb|EFW58234.1| NADH-ubiquinone oxidoreductase chain B [Shigella flexneri CDC
           796-83]
 gi|320192092|gb|EFW66737.1| NADH-ubiquinone oxidoreductase chain B [Escherichia coli O157:H7
           str. EC1212]
 gi|320196154|gb|EFW70778.1| NADH-ubiquinone oxidoreductase chain B [Escherichia coli WV_060327]
 gi|320199875|gb|EFW74464.1| NADH-ubiquinone oxidoreductase chain B [Escherichia coli EC4100B]
 gi|320641114|gb|EFX10593.1| NADH dehydrogenase subunit B [Escherichia coli O157:H7 str. G5101]
 gi|320646502|gb|EFX15421.1| NADH dehydrogenase subunit B [Escherichia coli O157:H- str. 493-89]
 gi|320651599|gb|EFX19979.1| NADH dehydrogenase subunit B [Escherichia coli O157:H- str. H 2687]
 gi|320657351|gb|EFX25153.1| NADH dehydrogenase subunit B [Escherichia coli O55:H7 str. 3256-97
           TW 07815]
 gi|320663053|gb|EFX30370.1| NADH dehydrogenase subunit B [Escherichia coli O55:H7 str. USDA
           5905]
 gi|320667871|gb|EFX34779.1| NADH dehydrogenase subunit B [Escherichia coli O157:H7 str. LSU-61]
 gi|323156437|gb|EFZ42592.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli EPECa14]
 gi|323161621|gb|EFZ47506.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli E128010]
 gi|323168543|gb|EFZ54223.1| NADH-quinone oxidoreductase, B subunit [Shigella sonnei 53G]
 gi|323171969|gb|EFZ57613.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli LT-68]
 gi|323176788|gb|EFZ62378.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli 1180]
 gi|323184394|gb|EFZ69770.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli 1357]
 gi|323187988|gb|EFZ73283.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli RN587/1]
 gi|323377841|gb|ADX50109.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli KO11]
 gi|323936577|gb|EGB32864.1| NADH-quinone oxidoreductase [Escherichia coli E1520]
 gi|323941016|gb|EGB37203.1| NADH-quinone oxidoreductase [Escherichia coli E482]
 gi|323944800|gb|EGB40866.1| NADH-quinone oxidoreductase [Escherichia coli H120]
 gi|323952080|gb|EGB47954.1| NADH-quinone oxidoreductase [Escherichia coli H252]
 gi|323956053|gb|EGB51806.1| NADH-quinone oxidoreductase [Escherichia coli H263]
 gi|323961470|gb|EGB57080.1| NADH-quinone oxidoreductase [Escherichia coli H489]
 gi|323967728|gb|EGB63140.1| NADH-quinone oxidoreductase [Escherichia coli M863]
 gi|323973008|gb|EGB68202.1| NADH-quinone oxidoreductase [Escherichia coli TA007]
 gi|323977512|gb|EGB72598.1| NADH-quinone oxidoreductase [Escherichia coli TW10509]
 gi|324006663|gb|EGB75882.1| NADH dehydrogenase subunit B [Escherichia coli MS 57-2]
 gi|324013173|gb|EGB82392.1| NADH dehydrogenase subunit B [Escherichia coli MS 60-1]
 gi|324020883|gb|EGB90102.1| NADH dehydrogenase subunit B [Escherichia coli MS 117-3]
 gi|324112819|gb|EGC06795.1| NADH-quinone oxidoreductase [Escherichia fergusonii B253]
 gi|324117835|gb|EGC11734.1| NADH-quinone oxidoreductase [Escherichia coli E1167]
 gi|325496678|gb|EGC94537.1| NADH dehydrogenase subunit B [Escherichia fergusonii ECD227]
 gi|326339638|gb|EGD63449.1| NADH-ubiquinone oxidoreductase chain B [Escherichia coli O157:H7
           str. 1125]
 gi|326344100|gb|EGD67861.1| NADH-ubiquinone oxidoreductase chain B [Escherichia coli O157:H7
           str. 1044]
 gi|327252557|gb|EGE64216.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli STEC_7v]
 gi|330912112|gb|EGH40622.1| NADH-ubiquinone oxidoreductase chain B [Escherichia coli AA86]
 gi|331039723|gb|EGI11943.1| NADH dehydrogenase I subunit B [Escherichia coli H736]
 gi|331043666|gb|EGI15804.1| NADH dehydrogenase I subunit B [Escherichia coli M605]
 gi|331048578|gb|EGI20654.1| NADH dehydrogenase I subunit B [Escherichia coli M718]
 gi|331056617|gb|EGI28626.1| NADH dehydrogenase I subunit B [Escherichia coli TA206]
 gi|331059601|gb|EGI31578.1| NADH dehydrogenase I subunit B [Escherichia coli TA143]
 gi|331064179|gb|EGI36090.1| NADH dehydrogenase I subunit B [Escherichia coli TA271]
 gi|331069063|gb|EGI40455.1| NADH dehydrogenase I subunit B [Escherichia coli TA280]
 gi|331074693|gb|EGI46013.1| NADH dehydrogenase I subunit B [Escherichia coli H591]
 gi|331078910|gb|EGI50112.1| NADH dehydrogenase I subunit B [Escherichia coli H299]
 gi|332088417|gb|EGI93535.1| NADH-quinone oxidoreductase, B subunit [Shigella boydii 5216-82]
 gi|332090619|gb|EGI95715.1| NADH-quinone oxidoreductase, B subunit [Shigella dysenteriae
           155-74]
 gi|332093356|gb|EGI98414.1| NADH-quinone oxidoreductase, B subunit [Shigella boydii 3594-74]
 gi|332100919|gb|EGJ04265.1| NADH:ubiquinone oxidoreductase chain B [Shigella sp. D9]
 gi|332344068|gb|AEE57402.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli UMNK88]
 gi|332754935|gb|EGJ85300.1| NADH-quinone oxidoreductase, B subunit [Shigella flexneri 4343-70]
 gi|332755336|gb|EGJ85700.1| NADH-quinone oxidoreductase, B subunit [Shigella flexneri K-671]
 gi|332756446|gb|EGJ86797.1| NADH-quinone oxidoreductase, B subunit [Shigella flexneri 2747-71]
 gi|332766106|gb|EGJ96316.1| nuoB [Shigella flexneri 2930-71]
 gi|333001431|gb|EGK20999.1| NADH-quinone oxidoreductase, B subunit [Shigella flexneri VA-6]
 gi|333001890|gb|EGK21456.1| NADH-quinone oxidoreductase, B subunit [Shigella flexneri K-218]
 gi|333002654|gb|EGK22214.1| NADH-quinone oxidoreductase, B subunit [Shigella flexneri K-272]
 gi|333016449|gb|EGK35780.1| NADH-quinone oxidoreductase, B subunit [Shigella flexneri K-304]
 gi|333016538|gb|EGK35868.1| NADH-quinone oxidoreductase, B subunit [Shigella flexneri K-227]
          Length = 220

 Score =  208 bits (529), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 74/169 (43%), Positives = 108/169 (63%), Gaps = 3/169 (1%)

Query: 14  QSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQAS 73
                L+K +     +  E+ +K   +  ++ +V W R  S+    FGL+CC VEM+ + 
Sbjct: 14  NDRYPLQKQEIVTDPLEQEV-NKNVFMGKLNDMVNWGRKNSIWPYNFGLSCCYVEMVTSF 72

Query: 74  MPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANG 132
              +D+ RFG    RASPRQ+D+M+VAGT   KMA  ++R+YDQM EP++VISMG+CAN 
Sbjct: 73  TAVHDVARFGAEVLRASPRQADLMVVAGTCFTKMAPVIQRLYDQMLEPKWVISMGACANS 132

Query: 133 GGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
           GG Y   YSVV+G D+ +PVD+Y+PGCPP  EA +  ++LLQ+ I +  
Sbjct: 133 GGMY-DIYSVVQGVDKFIPVDVYIPGCPPRPEAYMQALMLLQESIGKER 180


>gi|226306213|ref|YP_002766173.1| NADH-quinone oxidoreductase chain B [Rhodococcus erythropolis PR4]
 gi|229490898|ref|ZP_04384733.1| NADH-quinone oxidoreductase subunit b [Rhodococcus erythropolis
           SK121]
 gi|259514682|sp|C0ZYJ9|NUOB_RHOE4 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|226185330|dbj|BAH33434.1| NADH-quinone oxidoreductase chain B [Rhodococcus erythropolis PR4]
 gi|229322288|gb|EEN88074.1| NADH-quinone oxidoreductase subunit b [Rhodococcus erythropolis
           SK121]
          Length = 184

 Score =  208 bits (529), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 81/151 (53%), Positives = 109/151 (72%), Gaps = 2/151 (1%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89
            E    GFL+T+V+ L  +AR GSL   TFGLACCA+EMM  +  R+DL RFG    RAS
Sbjct: 4   EEKLPSGFLLTTVEGLAGYARKGSLWPATFGLACCAIEMMATTSGRFDLARFGMEAFRAS 63

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQ+D++IVAG ++ KM   LR+VYDQM EP++V++MG CA+ GG ++  Y+VV+G D I
Sbjct: 64  PRQADLLIVAGRVSQKMGPVLRQVYDQMAEPKWVLAMGVCASSGGMFNN-YAVVQGVDHI 122

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           VPVDIY+PGCPP  E L+  I+ L +KI+ +
Sbjct: 123 VPVDIYLPGCPPRPEMLLNAIIELHRKIQEM 153


>gi|254391175|ref|ZP_05006382.1| NADH dehydrogenase I chain B [Streptomyces clavuligerus ATCC 27064]
 gi|197704869|gb|EDY50681.1| NADH dehydrogenase I chain B [Streptomyces clavuligerus ATCC 27064]
          Length = 237

 Score =  208 bits (529), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 79/136 (58%), Positives = 102/136 (75%), Gaps = 1/136 (0%)

Query: 46  LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR-ASPRQSDVMIVAGTLTN 104
           ++ W R  SL    FGLACCA+E + ASM R+D  R G  P    PRQ+D+MIV+GT+T+
Sbjct: 54  VLNWGRRYSLWVFNFGLACCAIEFIAASMARHDFIRLGVIPFAPGPRQADLMIVSGTVTD 113

Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164
           KMA A++R+Y+QMPEP+YVIS G+C+N GG Y  SYSV +G D+I+PVD+YVPGCPP  E
Sbjct: 114 KMAPAVKRLYEQMPEPKYVISFGACSNCGGPYWDSYSVTKGVDQIIPVDVYVPGCPPRPE 173

Query: 165 ALIYGILLLQKKIRRV 180
           AL+ GIL LQ+KI R 
Sbjct: 174 ALLQGILKLQEKIARE 189


>gi|55378230|ref|YP_136080.1| NADH dehydrogenase I B subunit [Haloarcula marismortui ATCC 43049]
 gi|55230955|gb|AAV46374.1| NADH dehydrogenase I B subunit [Haloarcula marismortui ATCC 43049]
          Length = 230

 Score =  208 bits (529), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 77/176 (43%), Positives = 116/176 (65%), Gaps = 2/176 (1%)

Query: 4   TTVNQKIISGQSSCSLEKVDADFSR-ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62
           T    + +S Q +   +  D  F+  +        F++T  D+ + W R  S+  + FG+
Sbjct: 6   TPPAVEDVSTQEARMGDGADDRFNSTLREAFGSTPFILTKFDKFMNWVRGSSMFMLQFGI 65

Query: 63  ACCAVEMMQASMPRYDLERFGF-APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPR 121
           ACC++EM+     ++DL+RFG   PRASPRQ+DV+IV GT+ +K A  ++RVYDQMPEP+
Sbjct: 66  ACCSIEMIHTYAIKHDLDRFGSGVPRASPRQADVIIVPGTIVSKFAPRMKRVYDQMPEPK 125

Query: 122 YVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
           +V+SMGSC   GG +   Y+V++G + ++PVDI+VPGCPP  EALIYG+  LQ++I
Sbjct: 126 FVVSMGSCTISGGPFQEGYNVIKGAEEVIPVDIHVPGCPPRPEALIYGVAKLQERI 181


>gi|320529348|ref|ZP_08030436.1| NADH dehydrogenase subunit B [Selenomonas artemidis F0399]
 gi|320138314|gb|EFW30208.1| NADH dehydrogenase subunit B [Selenomonas artemidis F0399]
          Length = 178

 Score =  208 bits (529), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 79/160 (49%), Positives = 106/160 (66%), Gaps = 1/160 (0%)

Query: 25  DFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF 84
           + +    E       V  +DQL  WA   S+  ++ GLACCA+EMM  +  R+DL RFG+
Sbjct: 2   EIAERVPESLRHNVFVVKIDQLFRWAHASSIWPLSSGLACCAIEMMSTATARFDLARFGY 61

Query: 85  A-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVV 143
              R  PRQ+D++IVAGTLT KMA  + R+Y+QMPEP+YVI+MG+C   GG +  SYSVV
Sbjct: 62  EVFRPCPRQADLLIVAGTLTWKMAEPIVRLYEQMPEPKYVIAMGACTIAGGPFADSYSVV 121

Query: 144 RGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
            G D I+PVD+Y+PGCPP  EAL+ G+L L++KI     V
Sbjct: 122 PGIDDILPVDVYIPGCPPRPEALMDGMLKLREKILHPERV 161


>gi|294814429|ref|ZP_06773072.1| NADH dehydrogenase I chain B [Streptomyces clavuligerus ATCC 27064]
 gi|326442819|ref|ZP_08217553.1| putative NADH dehydrogenase chain B [Streptomyces clavuligerus ATCC
           27064]
 gi|294327028|gb|EFG08671.1| NADH dehydrogenase I chain B [Streptomyces clavuligerus ATCC 27064]
          Length = 239

 Score =  208 bits (529), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 79/136 (58%), Positives = 102/136 (75%), Gaps = 1/136 (0%)

Query: 46  LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR-ASPRQSDVMIVAGTLTN 104
           ++ W R  SL    FGLACCA+E + ASM R+D  R G  P    PRQ+D+MIV+GT+T+
Sbjct: 56  VLNWGRRYSLWVFNFGLACCAIEFIAASMARHDFIRLGVIPFAPGPRQADLMIVSGTVTD 115

Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164
           KMA A++R+Y+QMPEP+YVIS G+C+N GG Y  SYSV +G D+I+PVD+YVPGCPP  E
Sbjct: 116 KMAPAVKRLYEQMPEPKYVISFGACSNCGGPYWDSYSVTKGVDQIIPVDVYVPGCPPRPE 175

Query: 165 ALIYGILLLQKKIRRV 180
           AL+ GIL LQ+KI R 
Sbjct: 176 ALLQGILKLQEKIARE 191


>gi|15802834|ref|NP_288861.1| NADH dehydrogenase subunit B [Escherichia coli O157:H7 EDL933]
 gi|25298992|pir||D85869 NADH dehydrogenase I chain B [imported] - Escherichia coli  (strain
           O157:H7, substrain EDL933)
 gi|12516640|gb|AAG57416.1|AE005461_1 NADH dehydrogenase I chain B [Escherichia coli O157:H7 str. EDL933]
          Length = 220

 Score =  207 bits (528), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 74/169 (43%), Positives = 108/169 (63%), Gaps = 3/169 (1%)

Query: 14  QSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQAS 73
                L+K +     +  E+ +K   +  ++ +V W R  S+    FGL+CC VEM+ + 
Sbjct: 14  NDRYPLQKQEIVTDPLEQEV-NKNVFMGKLNDMVNWGRKNSIWPYNFGLSCCYVEMVTSF 72

Query: 74  MPRYDLERFGF-APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANG 132
              +D+ RFG    RASPRQ+D+M+VAGT   KMA  ++R+YDQM EP++VISMG+CAN 
Sbjct: 73  TAVHDVARFGAXVLRASPRQADLMVVAGTCFTKMAPVIQRLYDQMLEPKWVISMGACANS 132

Query: 133 GGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
           GG Y   YSVV+G D+ +PVD+Y+PGCPP  EA +  ++LLQ+ I +  
Sbjct: 133 GGMY-DIYSVVQGVDKFIPVDVYIPGCPPRPEAYMQALMLLQESIGKER 180


>gi|120402882|ref|YP_952711.1| NADH dehydrogenase subunit B [Mycobacterium vanbaalenii PYR-1]
 gi|238065183|sp|A1T6A5|NUOB_MYCVP RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|119955700|gb|ABM12705.1| NADH dehydrogenase subunit B [Mycobacterium vanbaalenii PYR-1]
          Length = 184

 Score =  207 bits (528), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 76/151 (50%), Positives = 110/151 (72%), Gaps = 2/151 (1%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89
            E    G L+++V+++  + R GSL   TFGLACCA+EMM  + PR+D+ RFG     A+
Sbjct: 4   EERLPGGILLSTVEKVAGYVRKGSLWPATFGLACCAIEMMATAGPRFDISRFGMERFSAT 63

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQ+D+MIVAG ++ KMA  LR++YDQM EP++V++MG CA+ GG ++  Y+VV+G D +
Sbjct: 64  PRQADLMIVAGRVSQKMAPVLRQIYDQMAEPKWVLAMGVCASSGGMFNN-YAVVQGVDHV 122

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           VPVDIY+PGCPP  E L++ IL L  KI+++
Sbjct: 123 VPVDIYLPGCPPRPEMLLHAILKLHDKIQQM 153


>gi|301026957|ref|ZP_07190350.1| NADH dehydrogenase subunit B [Escherichia coli MS 196-1]
 gi|299879504|gb|EFI87715.1| NADH dehydrogenase subunit B [Escherichia coli MS 196-1]
          Length = 220

 Score =  207 bits (528), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 74/169 (43%), Positives = 108/169 (63%), Gaps = 3/169 (1%)

Query: 14  QSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQAS 73
                L+K +     +  E+ +K   +  ++ +V W R  S+    FGL+CC VEM+ + 
Sbjct: 14  NDRYPLQKQEIVTDPLDQEV-NKNVFMGKLNDMVNWGRKNSIWPYNFGLSCCYVEMVTSF 72

Query: 74  MPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANG 132
              +D+ RFG    RASPRQ+D+M+VAGT   KMA  ++R+YDQM EP++VISMG+CAN 
Sbjct: 73  TAVHDVARFGAEVLRASPRQADLMVVAGTCFTKMAPVIQRLYDQMLEPKWVISMGACANS 132

Query: 133 GGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
           GG Y   YSVV+G D+ +PVD+Y+PGCPP  EA +  ++LLQ+ I +  
Sbjct: 133 GGMY-DIYSVVQGVDKFIPVDVYIPGCPPRPEAYMQALMLLQESIGKER 180


>gi|187736633|ref|YP_001878745.1| NADH-quinone oxidoreductase, B subunit [Akkermansia muciniphila
           ATCC BAA-835]
 gi|238065050|sp|B2UPT6|NUOB_AKKM8 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|187426685|gb|ACD05964.1| NADH-quinone oxidoreductase, B subunit [Akkermansia muciniphila
           ATCC BAA-835]
          Length = 193

 Score =  207 bits (528), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 76/145 (52%), Positives = 105/145 (72%), Gaps = 2/145 (1%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQ 92
               F+ T++D  + W R  SL  M  GL+CCA+E M  +  RYDL RFG    R SPRQ
Sbjct: 19  AEGNFVYTTLDAAINWIRKNSLWPMPMGLSCCAIEFMAVACSRYDLSRFGSEVTRFSPRQ 78

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           +DVMIVAGT+T KMA A+RR++DQMPEP++ I+MG+CA+ GG +  SYSV++G D+I+PV
Sbjct: 79  ADVMIVAGTVTYKMALAVRRIWDQMPEPKWCIAMGACASTGGMFR-SYSVLQGVDKILPV 137

Query: 153 DIYVPGCPPTAEALIYGILLLQKKI 177
           D+Y+ GCPP  EA++  +L L+KK+
Sbjct: 138 DVYISGCPPRPEAILEALLTLRKKL 162


>gi|313895909|ref|ZP_07829463.1| NADH-quinone oxidoreductase, B subunit [Selenomonas sp. oral taxon
           137 str. F0430]
 gi|312975334|gb|EFR40795.1| NADH-quinone oxidoreductase, B subunit [Selenomonas sp. oral taxon
           137 str. F0430]
          Length = 178

 Score =  207 bits (527), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 79/160 (49%), Positives = 106/160 (66%), Gaps = 1/160 (0%)

Query: 25  DFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF 84
           + +    E       V  +DQL  WA   S+  ++ GLACCA+EMM  +  R+DL RFG+
Sbjct: 2   EIAERVPESLRHNVFVVKIDQLFRWAHASSIWPLSSGLACCAIEMMSTATARFDLARFGY 61

Query: 85  A-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVV 143
              R  PRQ+D++IVAGTLT KMA  + R+Y+QMPEP+YVI+MG+C   GG +  SYSVV
Sbjct: 62  EVFRPCPRQADLLIVAGTLTWKMAEPIVRLYEQMPEPKYVIAMGACTIAGGPFADSYSVV 121

Query: 144 RGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
            G D I+PVD+Y+PGCPP  EAL+ G+L L++KI     V
Sbjct: 122 PGIDDILPVDVYIPGCPPRPEALMDGMLKLREKILHPERV 161


>gi|257453968|ref|ZP_05619244.1| NADH-quinone oxidoreductase subunit b [Enhydrobacter aerosaccus
           SK60]
 gi|257448633|gb|EEV23600.1| NADH-quinone oxidoreductase subunit b [Enhydrobacter aerosaccus
           SK60]
          Length = 220

 Score =  207 bits (527), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 79/158 (50%), Positives = 102/158 (64%), Gaps = 6/158 (3%)

Query: 29  ISSEITHKGFLVTSVDQL----VTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF 84
           I  E  +K  ++T ++ L      W R  SL    FG +CC VE        +DL RFG 
Sbjct: 23  IDEEEVNKNVVMTRLEDLTHSLANWGRKHSLWPFNFGTSCCYVEYATTLTGVHDLSRFGA 82

Query: 85  AP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVV 143
              RASPRQ+DVMIVAGT   KMA  ++R+Y+QM EP++VISMG+CAN GG Y   YSVV
Sbjct: 83  EVIRASPRQADVMIVAGTCFMKMAPVIQRLYEQMLEPKWVISMGACANSGGMY-DVYSVV 141

Query: 144 RGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
           +G D+I+PVD+Y+PGCPP  EALI  I+LLQ+ I +  
Sbjct: 142 QGVDKIIPVDVYIPGCPPRPEALIQAIMLLQESITKER 179


>gi|254446527|ref|ZP_05060003.1| NADH-quinone oxidoreductase, B subunit subfamily [Verrucomicrobiae
           bacterium DG1235]
 gi|198260835|gb|EDY85143.1| NADH-quinone oxidoreductase, B subunit subfamily [Verrucomicrobiae
           bacterium DG1235]
          Length = 171

 Score =  207 bits (527), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 78/155 (50%), Positives = 107/155 (69%), Gaps = 2/155 (1%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RAS 89
           +     G +V+  D ++ W RT SL  M  GLACCA+E+M A   ++D+ RFG    R S
Sbjct: 11  NSKVEGGVIVSKADAVINWIRTHSLWPMPMGLACCAIELMAAGASKFDISRFGAEVMRFS 70

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQSDVMIVAGT+T KMA  +RR+YDQM EP++VI+MG+CA+ GG Y  SY+ ++G DRI
Sbjct: 71  PRQSDVMIVAGTVTYKMAPIVRRIYDQMAEPKWVIAMGACASSGGMYR-SYATLQGVDRI 129

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           VPVD+Y+ GCPP  EAL+  ++ LQ K+    + +
Sbjct: 130 VPVDVYISGCPPRPEALLDALIKLQDKVSTETSTQ 164


>gi|169629221|ref|YP_001702870.1| NADH dehydrogenase subunit B [Mycobacterium abscessus ATCC 19977]
 gi|238065175|sp|B1MPG5|NUOB_MYCA9 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|169241188|emb|CAM62216.1| NADH-quinone oxidoreductase, B subunit NuoB [Mycobacterium
           abscessus]
          Length = 184

 Score =  207 bits (527), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 77/151 (50%), Positives = 109/151 (72%), Gaps = 2/151 (1%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89
            E    GFL+++V+ L  + R GSL   TFGLACCA+EMM  + PR+D+ RFG     A+
Sbjct: 4   EEKLPSGFLLSTVETLAGYVRKGSLWPATFGLACCAIEMMSTAGPRFDIARFGMERFSAT 63

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQ+D+MIVAG ++ KMA  LR++YDQM EP++V++MG CA+ GG ++  Y++V+G D +
Sbjct: 64  PRQADLMIVAGRVSQKMAPVLRQIYDQMAEPKWVLAMGVCASSGGMFNN-YAIVQGVDHV 122

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           VPVDIY+PGCPP  E L++ IL L +KI  +
Sbjct: 123 VPVDIYLPGCPPRPEMLLHAILKLHEKIAHM 153


>gi|282860763|ref|ZP_06269829.1| NADH-quinone oxidoreductase, B subunit [Streptomyces sp. ACTE]
 gi|282564499|gb|EFB70035.1| NADH-quinone oxidoreductase, B subunit [Streptomyces sp. ACTE]
          Length = 211

 Score =  207 bits (527), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 79/136 (58%), Positives = 102/136 (75%), Gaps = 1/136 (0%)

Query: 46  LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR-ASPRQSDVMIVAGTLTN 104
           ++ W R  SL    FGLACCA+E + ASM R+D  R G  P    PRQ+D+M+V+GT+T+
Sbjct: 41  VLNWGRRYSLWVFNFGLACCAIEFIAASMARHDFMRMGVIPFAPGPRQADLMVVSGTVTD 100

Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164
           KMA A+RR+Y+QMPEP+YVIS G+C+N GG Y  SYSV +G D+I+PVD+YVPGCPP  E
Sbjct: 101 KMAPAVRRLYEQMPEPKYVISFGACSNCGGPYWDSYSVTKGVDQIIPVDVYVPGCPPRPE 160

Query: 165 ALIYGILLLQKKIRRV 180
           AL+ GIL LQ+KI R 
Sbjct: 161 ALLQGILKLQEKIARE 176


>gi|257387965|ref|YP_003177738.1| NADH-quinone oxidoreductase subunit beta [Halomicrobium mukohataei
           DSM 12286]
 gi|257170272|gb|ACV48031.1| NADH-quinone oxidoreductase, B subunit [Halomicrobium mukohataei
           DSM 12286]
          Length = 229

 Score =  207 bits (527), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 76/175 (43%), Positives = 113/175 (64%), Gaps = 1/175 (0%)

Query: 4   TTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLA 63
            T      + ++       D   S++        F++T  D+ + W R  S+  + FG+A
Sbjct: 6   PTPGDAQSTQEARIGSGADDRFNSKLREAFGSTPFILTKFDKFMNWVRGSSMFMLQFGIA 65

Query: 64  CCAVEMMQASMPRYDLERFGF-APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122
           CC++EMM     ++DL+RFG   PRASPRQ+DV+IV GT+ +K A  ++RVYDQMPEP++
Sbjct: 66  CCSIEMMHTYAVKHDLDRFGAGVPRASPRQADVIIVPGTIVSKFAPRMKRVYDQMPEPKF 125

Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
           V+SMGSC   GG +   Y+V++G + ++PVDI+VPGCPP  EALIYG+  LQ++I
Sbjct: 126 VVSMGSCTISGGPFQEGYNVIKGAEEVIPVDIHVPGCPPRPEALIYGVAKLQERI 180


>gi|300918548|ref|ZP_07135138.1| NADH dehydrogenase subunit B [Escherichia coli MS 115-1]
 gi|300414283|gb|EFJ97593.1| NADH dehydrogenase subunit B [Escherichia coli MS 115-1]
          Length = 220

 Score =  207 bits (527), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 73/169 (43%), Positives = 108/169 (63%), Gaps = 3/169 (1%)

Query: 14  QSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQAS 73
                L++ +     +  E+ +K   +  ++ +V W R  S+    FGL+CC VEM+ + 
Sbjct: 14  NDRYPLQRQEIVTDPLEQEV-NKNVFMGKLNDMVNWGRKNSIWPYNFGLSCCYVEMVTSF 72

Query: 74  MPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANG 132
              +D+ RFG    RASPRQ+D+M+VAGT   KMA  ++R+YDQM EP++VISMG+CAN 
Sbjct: 73  TAVHDVARFGAEVLRASPRQADLMVVAGTCFTKMAPVIQRLYDQMLEPKWVISMGACANS 132

Query: 133 GGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
           GG Y   YSVV+G D+ +PVD+Y+PGCPP  EA +  ++LLQ+ I +  
Sbjct: 133 GGMY-DIYSVVQGVDKFIPVDVYIPGCPPRPEAYMQALMLLQESIGKER 180


>gi|158260365|dbj|BAF82360.1| unnamed protein product [Homo sapiens]
          Length = 206

 Score =  207 bits (527), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 104/163 (63%), Positives = 120/163 (73%), Gaps = 4/163 (2%)

Query: 6   VNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACC 65
           V+Q + +   S +   +    +      +   ++V  +D LV WAR  SL  MTFGLACC
Sbjct: 30  VHQSVATDGPSSTQPALPKARAVAPKPSSRGEYVVAKLDDLVNWARRSSLWPMTFGLACC 89

Query: 66  AVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVIS 125
           AVEMM  + PRYD++RFG   RASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYV+S
Sbjct: 90  AVEMMHMAAPRYDMDRFGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVVS 149

Query: 126 MGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPG----CPPTAE 164
           MGSCANGGGYYHYSYSVVRGCDRIVPVDIY+PG     PPT E
Sbjct: 150 MGSCANGGGYYHYSYSVVRGCDRIVPVDIYIPGRAGTAPPTRE 192


>gi|289769797|ref|ZP_06529175.1| NADH dehydrogenase subunit NuoB2 [Streptomyces lividans TK24]
 gi|289699996|gb|EFD67425.1| NADH dehydrogenase subunit NuoB2 [Streptomyces lividans TK24]
          Length = 219

 Score =  207 bits (527), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 78/136 (57%), Positives = 102/136 (75%), Gaps = 1/136 (0%)

Query: 46  LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR-ASPRQSDVMIVAGTLTN 104
           ++ W R  SL    FGLACCA+E + ASM R+D  R G  P    PRQ+D+M+V+GT+T+
Sbjct: 23  VLNWGRRYSLWVFNFGLACCAIEFIAASMARHDFIRLGVIPFAPGPRQADLMVVSGTVTD 82

Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164
           KMA A++R+Y+QMPEP+YVIS G+C+N GG Y  SYSV +G D+I+PVD+YVPGCPP  E
Sbjct: 83  KMAPAVKRLYEQMPEPKYVISFGACSNCGGPYWDSYSVTKGVDQIIPVDVYVPGCPPRPE 142

Query: 165 ALIYGILLLQKKIRRV 180
           AL+ GIL LQ+KI R 
Sbjct: 143 ALLQGILKLQEKIARE 158


>gi|300175569|emb|CBK20880.2| subunit NuoB (NDUFS7) [Blastocystis hominis]
          Length = 220

 Score =  207 bits (527), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 92/143 (64%), Positives = 117/143 (81%)

Query: 40  VTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVA 99
           VT+VD+++ + R GS+   TFGLACCA+EM+ AS  R+D ER G  PRA+PRQ+D+MIV+
Sbjct: 71  VTTVDKVIGYCRAGSVFPQTFGLACCAMEMIDASSARFDFERLGMIPRATPRQADLMIVS 130

Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGC 159
           GT+TNKMA A+RR+YDQM EPRYVISMGSCAN GGYY YSY+VVRG DR+ PVD YVPGC
Sbjct: 131 GTVTNKMAPAIRRLYDQMSEPRYVISMGSCANSGGYYAYSYNVVRGVDRLFPVDYYVPGC 190

Query: 160 PPTAEALIYGILLLQKKIRRVGN 182
           PPTA+ L+Y IL++ KK+++   
Sbjct: 191 PPTADGLLYAILMVMKKLKQQKT 213


>gi|21672438|ref|NP_660505.1| NADH dehydrogenase subunit B [Buchnera aphidicola str. Sg
           (Schizaphis graminum)]
 gi|25008859|sp|Q8K9Y6|NUOB_BUCAP RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|21623050|gb|AAM67716.1| NADH dehydrogenase I chain B [Buchnera aphidicola str. Sg
           (Schizaphis graminum)]
          Length = 223

 Score =  207 bits (527), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 79/180 (43%), Positives = 107/180 (59%), Gaps = 2/180 (1%)

Query: 3   LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62
           LT   +K      + + +           +    G +   + ++V W R  SL    FGL
Sbjct: 5   LTRAERKSQRHYPNETTQSTIDPIEGYLKKNILMGKVTKLLHKIVNWGRKNSLWPYNFGL 64

Query: 63  ACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPR 121
           +CC VEM+ A    +D+ RFG    RASPRQ+DVM++AGT   KMA  ++R+YDQM EP+
Sbjct: 65  SCCYVEMVTAFTSVHDVARFGSEVLRASPRQADVMVIAGTPFIKMAPVIQRLYDQMLEPK 124

Query: 122 YVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
           +VISMG+CAN GG Y   YSVV+G D+ +PVDIY+PGCPP  EA I+ + LLQK I    
Sbjct: 125 WVISMGACANSGGMY-DIYSVVQGVDKFLPVDIYIPGCPPRPEAYIHALTLLQKTINEER 183


>gi|300711699|ref|YP_003737513.1| NADH dehydrogenase-like complex subunit B [Halalkalicoccus jeotgali
           B3]
 gi|299125382|gb|ADJ15721.1| NADH dehydrogenase-like complex subunit B [Halalkalicoccus jeotgali
           B3]
          Length = 233

 Score =  207 bits (527), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 73/177 (41%), Positives = 117/177 (66%), Gaps = 1/177 (0%)

Query: 2   GLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFG 61
            +   N  + + + +   +  +   SR+        F++T  D+ + WAR  S+  + FG
Sbjct: 8   SIAESNDAMTATREARMGDVDNRFNSRLREAFGSSPFILTKFDKFLNWARGSSMFMLQFG 67

Query: 62  LACCAVEMMQASMPRYDLERFGF-APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           +ACC++EMM     ++DL+RFG   PRASPRQ+D +I+ GT+ +K A  ++RVYDQM EP
Sbjct: 68  IACCSLEMMHTYAVKHDLDRFGSGVPRASPRQADTIIIPGTIVSKFAPRMKRVYDQMAEP 127

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
           ++V++MGSCA  GG +   Y+V++G + ++PVDI+VPGCPP  EAL+YG++ LQ++I
Sbjct: 128 KFVVNMGSCAISGGPFQEGYNVIKGAEEVIPVDIHVPGCPPRPEALVYGVVKLQERI 184


>gi|312200066|ref|YP_004020127.1| NADH-quinone oxidoreductase B subunit [Frankia sp. EuI1c]
 gi|311231402|gb|ADP84257.1| NADH-quinone oxidoreductase, B subunit [Frankia sp. EuI1c]
          Length = 276

 Score =  207 bits (527), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 79/149 (53%), Positives = 106/149 (71%), Gaps = 2/149 (1%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89
            E    G L+ SV++L    R  SL  +TFGLACCA+EMM     RYDL RFG    RAS
Sbjct: 4   EEKLPSGVLLASVEKLAGMGRKSSLWPVTFGLACCAIEMMGTGAARYDLARFGMEVFRAS 63

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQ+D+MIVAG ++ KMA  LR++YDQMPEP++V+SMG CA+ GG ++  Y++V+G D I
Sbjct: 64  PRQADLMIVAGRVSQKMAPVLRQIYDQMPEPKWVLSMGVCASSGGMFNN-YAIVQGVDHI 122

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           VPVD+Y+PGCPP  E L+  I+ + +KI+
Sbjct: 123 VPVDMYLPGCPPRPEMLMDAIMKIHRKIQ 151


>gi|292655139|ref|YP_003535036.1| NADH dehydrogenase-like complex subunit B [Haloferax volcanii DS2]
 gi|291372435|gb|ADE04662.1| NADH dehydrogenase-like complex subunit B [Haloferax volcanii DS2]
          Length = 233

 Score =  207 bits (527), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 75/176 (42%), Positives = 112/176 (63%), Gaps = 1/176 (0%)

Query: 3   LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62
           +T   Q     + +      D   S++        F++T  D+ + W R  S+  + FG+
Sbjct: 9   VTDDTQVQTETRDARMAGADDRFNSKLREAFGSSPFILTKFDKFMNWVRGSSMFMLQFGI 68

Query: 63  ACCAVEMMQASMPRYDLERFGF-APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPR 121
           ACC++EMM     ++DL+RF    PRASPRQ+DV+IV GT+ +K A  ++RVYDQMPEP+
Sbjct: 69  ACCSIEMMHTYSVKHDLDRFAAGVPRASPRQADVIIVPGTIVSKFAPRMKRVYDQMPEPK 128

Query: 122 YVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
           +V+ MGSC   GG +   Y+V++G + ++PVDI++PGCPP  EALIYGI  LQ++I
Sbjct: 129 FVVGMGSCTISGGPFQEGYNVIKGAEEVIPVDIHIPGCPPRPEALIYGIAKLQERI 184


>gi|289751824|ref|ZP_06511202.1| LOW QUALITY PROTEIN: NADH dehydrogenase subunit I B nuoB
           [Mycobacterium tuberculosis T92]
 gi|289692411|gb|EFD59840.1| LOW QUALITY PROTEIN: NADH dehydrogenase subunit I B nuoB
           [Mycobacterium tuberculosis T92]
          Length = 185

 Score =  207 bits (527), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 74/151 (49%), Positives = 110/151 (72%), Gaps = 2/151 (1%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89
            E    G L+++V+++  + R  SL   TFGLACCA+EMM  + PR+D+ RFG     A+
Sbjct: 4   EEQLPGGILLSTVEKVAGYVRKNSLWPATFGLACCAIEMMATAGPRFDIARFGMERFSAT 63

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQ+D+MIVAG ++ KMA  LR++YDQM EP++V++MG CA+ GG ++  Y++V+G D +
Sbjct: 64  PRQADLMIVAGRVSQKMAPVLRQIYDQMAEPKWVLAMGVCASSGGMFNN-YAIVQGVDHV 122

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           VPVDIY+PGCPP  E L++ IL L +KI+++
Sbjct: 123 VPVDIYLPGCPPRPEMLLHAILKLHEKIQQM 153


>gi|77164635|ref|YP_343160.1| NADH dehydrogenase subunit B [Nitrosococcus oceani ATCC 19707]
 gi|254434174|ref|ZP_05047682.1| NADH-quinone oxidoreductase, B subunit subfamily, putative
           [Nitrosococcus oceani AFC27]
 gi|123594559|sp|Q3JC16|NUOB1_NITOC RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName:
           Full=NADH dehydrogenase I subunit B 1; AltName:
           Full=NDH-1 subunit B 1
 gi|76882949|gb|ABA57630.1| NADH dehydrogenase subunit B [Nitrosococcus oceani ATCC 19707]
 gi|207090507|gb|EDZ67778.1| NADH-quinone oxidoreductase, B subunit subfamily, putative
           [Nitrosococcus oceani AFC27]
          Length = 212

 Score =  207 bits (527), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 77/174 (44%), Positives = 113/174 (64%), Gaps = 6/174 (3%)

Query: 9   KIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVE 68
           ++   Q++ S+E+    F     +   +  L   +  LV W R  SL    FGL+CC VE
Sbjct: 4   RLSKPQAATSIEQSKGSF----EDAIRRNLLFAQLQDLVAWGRKNSLWPYNFGLSCCYVE 59

Query: 69  MMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMG 127
           M+ +   +YD+ RFG    RA+PR++D+M+++GT+  KMA  ++R+Y+QM EPR+VISMG
Sbjct: 60  MVTSFTSKYDIARFGAEVIRATPREADLMVISGTVFIKMAPVIKRLYEQMMEPRWVISMG 119

Query: 128 SCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
           SCAN GG Y   YSVV+G D+ +PVD+YVPGCPP  +A + G+LLLQ+ I +  
Sbjct: 120 SCANSGGMY-DIYSVVQGVDKFLPVDVYVPGCPPRPDAFLEGLLLLQEAIGKEQ 172


>gi|15610282|ref|NP_217662.1| NADH dehydrogenase subunit B [Mycobacterium tuberculosis H37Rv]
 gi|15842722|ref|NP_337759.1| NADH dehydrogenase subunit B [Mycobacterium tuberculosis CDC1551]
 gi|31794322|ref|NP_856815.1| NADH dehydrogenase subunit B [Mycobacterium bovis AF2122/97]
 gi|121639029|ref|YP_979253.1| NADH dehydrogenase subunit B [Mycobacterium bovis BCG str. Pasteur
           1173P2]
 gi|148663001|ref|YP_001284524.1| NADH dehydrogenase subunit B [Mycobacterium tuberculosis H37Ra]
 gi|148824340|ref|YP_001289094.1| NADH dehydrogenase subunit B [Mycobacterium tuberculosis F11]
 gi|167970182|ref|ZP_02552459.1| NADH dehydrogenase subunit B [Mycobacterium tuberculosis H37Ra]
 gi|215405144|ref|ZP_03417325.1| NADH dehydrogenase subunit B [Mycobacterium tuberculosis 02_1987]
 gi|215432105|ref|ZP_03430024.1| NADH dehydrogenase subunit B [Mycobacterium tuberculosis EAS054]
 gi|215447436|ref|ZP_03434188.1| NADH dehydrogenase subunit B [Mycobacterium tuberculosis T85]
 gi|218754926|ref|ZP_03533722.1| NADH dehydrogenase subunit B [Mycobacterium tuberculosis GM 1503]
 gi|219559192|ref|ZP_03538268.1| NADH dehydrogenase subunit B [Mycobacterium tuberculosis T17]
 gi|224991521|ref|YP_002646210.1| NADH dehydrogenase subunit B [Mycobacterium bovis BCG str. Tokyo
           172]
 gi|253800180|ref|YP_003033181.1| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis KZN
           1435]
 gi|254233766|ref|ZP_04927091.1| NADH dehydrogenase I (chain B) nuoB (NADH-ubiquinone oxidoreductase
           chain B) [Mycobacterium tuberculosis C]
 gi|254365771|ref|ZP_04981816.1| NADH dehydrogenase I (chain B) nuoB (NADH-ubiquinone oxidoreductase
           chain B) [Mycobacterium tuberculosis str. Haarlem]
 gi|254552237|ref|ZP_05142684.1| NADH dehydrogenase subunit B [Mycobacterium tuberculosis '98-R604
           INH-RIF-EM']
 gi|260188187|ref|ZP_05765661.1| NADH dehydrogenase subunit B [Mycobacterium tuberculosis CPHL_A]
 gi|260202292|ref|ZP_05769783.1| NADH dehydrogenase subunit B [Mycobacterium tuberculosis T46]
 gi|260206485|ref|ZP_05773976.1| NADH dehydrogenase subunit B [Mycobacterium tuberculosis K85]
 gi|289444710|ref|ZP_06434454.1| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis
           T46]
 gi|289448826|ref|ZP_06438570.1| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis
           CPHL_A]
 gi|289555419|ref|ZP_06444629.1| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis KZN
           605]
 gi|289571357|ref|ZP_06451584.1| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis
           T17]
 gi|289575858|ref|ZP_06456085.1| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis
           K85]
 gi|289746955|ref|ZP_06506333.1| NADH dehydrogenase subunit beta [Mycobacterium tuberculosis
           02_1987]
 gi|289755265|ref|ZP_06514643.1| NADH dehydrogenase subunit B [Mycobacterium tuberculosis EAS054]
 gi|289759276|ref|ZP_06518654.1| NADH dehydrogenase subunit B [Mycobacterium tuberculosis T85]
 gi|289763329|ref|ZP_06522707.1| NADH dehydrogenase I (chain B) nuoB (NADH-ubiquinone oxidoreductase
           chain B) [Mycobacterium tuberculosis GM 1503]
 gi|294993125|ref|ZP_06798816.1| NADH dehydrogenase subunit B [Mycobacterium tuberculosis 210]
 gi|297635789|ref|ZP_06953569.1| NADH dehydrogenase subunit B [Mycobacterium tuberculosis KZN 4207]
 gi|297732786|ref|ZP_06961904.1| NADH dehydrogenase subunit B [Mycobacterium tuberculosis KZN R506]
 gi|306794900|ref|ZP_07433202.1| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis
           SUMu005]
 gi|306973581|ref|ZP_07486242.1| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis
           SUMu010]
 gi|307085892|ref|ZP_07495005.1| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis
           SUMu012]
 gi|313660119|ref|ZP_07816999.1| NADH dehydrogenase subunit B [Mycobacterium tuberculosis KZN V2475]
 gi|54037922|sp|P65576|NUOB_MYCBO RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|54041673|sp|P65575|NUOB_MYCTU RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|238065176|sp|A1KNE2|NUOB_MYCBP RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|238065181|sp|A5U7G2|NUOB_MYCTA RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|254767796|sp|C1AGR3|NUOB_MYCBT RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|1781222|emb|CAB06270.1| PROBABLE NADH DEHYDROGENASE I (CHAIN B) NUOB (NADH-UBIQUINONE
           OXIDOREDUCTASE CHAIN B) [Mycobacterium tuberculosis
           H37Rv]
 gi|13883044|gb|AAK47573.1| NADH dehydrogenase I, B subunit [Mycobacterium tuberculosis
           CDC1551]
 gi|31619918|emb|CAD95262.1| PROBABLE NADH DEHYDROGENASE I (CHAIN B) NUOB (NADH-UBIQUINONE
           OXIDOREDUCTASE CHAIN B) [Mycobacterium bovis AF2122/97]
 gi|121494677|emb|CAL73158.1| Probable NADH dehydrogenase I (chain B) nuoB [Mycobacterium bovis
           BCG str. Pasteur 1173P2]
 gi|124599295|gb|EAY58399.1| NADH dehydrogenase I (chain B) nuoB (NADH-ubiquinone oxidoreductase
           chain B) [Mycobacterium tuberculosis C]
 gi|134151284|gb|EBA43329.1| NADH dehydrogenase I (chain B) nuoB (NADH-ubiquinone oxidoreductase
           chain B) [Mycobacterium tuberculosis str. Haarlem]
 gi|148507153|gb|ABQ74962.1| NADH dehydrogenase subunit beta [Mycobacterium tuberculosis H37Ra]
 gi|148722867|gb|ABR07492.1| NADH dehydrogenase I chain B nuoB (NADH-ubiquinone oxidoreductase
           chain B) [Mycobacterium tuberculosis F11]
 gi|224774636|dbj|BAH27442.1| NADH dehydrogenase subunit B [Mycobacterium bovis BCG str. Tokyo
           172]
 gi|253321683|gb|ACT26286.1| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis KZN
           1435]
 gi|289417629|gb|EFD14869.1| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis
           T46]
 gi|289421784|gb|EFD18985.1| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis
           CPHL_A]
 gi|289440051|gb|EFD22544.1| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis KZN
           605]
 gi|289540289|gb|EFD44867.1| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis
           K85]
 gi|289545111|gb|EFD48759.1| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis
           T17]
 gi|289687483|gb|EFD54971.1| NADH dehydrogenase subunit beta [Mycobacterium tuberculosis
           02_1987]
 gi|289695852|gb|EFD63281.1| NADH dehydrogenase subunit B [Mycobacterium tuberculosis EAS054]
 gi|289710835|gb|EFD74851.1| NADH dehydrogenase I (chain B) nuoB (NADH-ubiquinone oxidoreductase
           chain B) [Mycobacterium tuberculosis GM 1503]
 gi|289714840|gb|EFD78852.1| NADH dehydrogenase subunit B [Mycobacterium tuberculosis T85]
 gi|308336686|gb|EFP25537.1| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis
           SUMu005]
 gi|308357065|gb|EFP45916.1| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis
           SUMu010]
 gi|308364627|gb|EFP53478.1| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis
           SUMu012]
 gi|323718234|gb|EGB27414.1| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis
           CDC1551A]
 gi|326902630|gb|EGE49563.1| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis
           W-148]
 gi|328459917|gb|AEB05340.1| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis KZN
           4207]
          Length = 184

 Score =  207 bits (527), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 74/151 (49%), Positives = 110/151 (72%), Gaps = 2/151 (1%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89
            E    G L+++V+++  + R  SL   TFGLACCA+EMM  + PR+D+ RFG     A+
Sbjct: 4   EEQLPGGILLSTVEKVAGYVRKNSLWPATFGLACCAIEMMATAGPRFDIARFGMERFSAT 63

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQ+D+MIVAG ++ KMA  LR++YDQM EP++V++MG CA+ GG ++  Y++V+G D +
Sbjct: 64  PRQADLMIVAGRVSQKMAPVLRQIYDQMAEPKWVLAMGVCASSGGMFNN-YAIVQGVDHV 122

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           VPVDIY+PGCPP  E L++ IL L +KI+++
Sbjct: 123 VPVDIYLPGCPPRPEMLLHAILKLHEKIQQM 153


>gi|294140414|ref|YP_003556392.1| NADH dehydrogenase I subunit B [Shewanella violacea DSS12]
 gi|293326883|dbj|BAJ01614.1| NADH dehydrogenase I, B subunit [Shewanella violacea DSS12]
          Length = 219

 Score =  207 bits (526), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 76/149 (51%), Positives = 107/149 (71%), Gaps = 2/149 (1%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RAS 89
            E+  K  LVT ++ LV W R+ SL    FGL+CC VEM  +   R+D+ RFG    RA+
Sbjct: 25  QEVVEKNLLVTRLEDLVAWGRSNSLWPFNFGLSCCYVEMATSFTSRHDIARFGSEVIRAT 84

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PR++D+++++GT+  KMA  ++ +YDQM EP++VISMGSCAN GG Y   YSVV+G D+ 
Sbjct: 85  PREADLIVISGTVFLKMAPVIKHLYDQMLEPKWVISMGSCANSGGMY-DVYSVVQGADKF 143

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           +P+D+YVPGCPP  EAL+YG+ LLQ+ I+
Sbjct: 144 LPIDLYVPGCPPRPEALMYGLTLLQEAIK 172


>gi|27904647|ref|NP_777773.1| NADH dehydrogenase subunit B [Buchnera aphidicola str. Bp
           (Baizongia pistaciae)]
 gi|38372478|sp|Q89AU5|NUOB_BUCBP RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|27904044|gb|AAO26878.1| NADH dehydrogenase I chain B [Buchnera aphidicola str. Bp
           (Baizongia pistaciae)]
          Length = 222

 Score =  207 bits (526), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 84/183 (45%), Positives = 110/183 (60%), Gaps = 7/183 (3%)

Query: 3   LTTVNQKIISGQSSCSLEK---VDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMT 59
           LT VN  I     +   EK   V     +   +    G L   +  LV W R  SL    
Sbjct: 5   LTRVN--ISDDDQNYPREKKIQVSDPTKKYIQKNVFMGTLSKVLHNLVNWGRKNSLWPYN 62

Query: 60  FGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMP 118
           FGL+CC VEM+ +    +D+ RFG    RASPRQ+D M++AGT   KM   ++R+YDQM 
Sbjct: 63  FGLSCCYVEMVTSFTSVHDISRFGSEVLRASPRQADFMVIAGTPFIKMVPIIQRLYDQML 122

Query: 119 EPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           EP++VISMGSCAN GG Y   YSVV+G D+ +PVD+Y+PGCPP  EA I+G++LLQK I 
Sbjct: 123 EPKWVISMGSCANSGGMY-DIYSVVQGVDKFLPVDVYIPGCPPRPEAYIHGLMLLQKSIS 181

Query: 179 RVG 181
           +  
Sbjct: 182 KER 184


>gi|240169669|ref|ZP_04748328.1| NADH dehydrogenase subunit B [Mycobacterium kansasii ATCC 12478]
          Length = 184

 Score =  207 bits (526), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 75/151 (49%), Positives = 109/151 (72%), Gaps = 2/151 (1%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89
            E    G L+++V+++  + R  SL   TFGLACCA+EMM  + PR+DL RFG     A+
Sbjct: 4   EEQLPGGILLSTVEKVAGYVRKNSLWPATFGLACCAIEMMATAGPRFDLARFGMERFSAT 63

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQ+D+MIVAG ++ KMA  LR++YDQM EP++V++MG CA+ GG ++  Y++V+G D +
Sbjct: 64  PRQADLMIVAGRVSQKMAPVLRQIYDQMAEPKWVLAMGVCASSGGMFNN-YAIVQGVDHV 122

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           VPVDIY+PGCPP  E L++ IL L +KI+ +
Sbjct: 123 VPVDIYLPGCPPRPEMLLHAILKLHEKIQEM 153


>gi|16761252|ref|NP_456869.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|16765654|ref|NP_461269.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|29141052|ref|NP_804394.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|56412776|ref|YP_149851.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|62180897|ref|YP_217314.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|161502528|ref|YP_001569640.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. arizonae
           serovar 62:z4,z23:-- str. RSK2980]
 gi|161612945|ref|YP_001586910.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
           serovar Paratyphi B str. SPB7]
 gi|167549674|ref|ZP_02343433.1| NADH-quinone oxidoreductase, B subunit [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|167994675|ref|ZP_02575766.1| NADH-quinone oxidoreductase, B subunit [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168229696|ref|ZP_02654754.1| NADH-quinone oxidoreductase, B subunit [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|168237344|ref|ZP_02662402.1| NADH-quinone oxidoreductase, B subunit [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|168242445|ref|ZP_02667377.1| NADH-quinone oxidoreductase, B subunit [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|168261657|ref|ZP_02683630.1| NADH-quinone oxidoreductase, B subunit [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|168465970|ref|ZP_02699840.1| NADH-quinone oxidoreductase, B subunit [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|168817943|ref|ZP_02829943.1| NADH-quinone oxidoreductase, B subunit [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|194443155|ref|YP_002041587.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194449154|ref|YP_002046380.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|194472303|ref|ZP_03078287.1| NADH-quinone oxidoreductase, B subunit [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194736744|ref|YP_002115396.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|197249243|ref|YP_002147285.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|197261696|ref|ZP_03161770.1| NADH-quinone oxidoreductase, B subunit [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197361710|ref|YP_002141346.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|198241862|ref|YP_002216397.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|200386648|ref|ZP_03213260.1| NADH-quinone oxidoreductase, B subunit [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|204928974|ref|ZP_03220117.1| NADH-quinone oxidoreductase, B subunit [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|205353442|ref|YP_002227243.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|207857745|ref|YP_002244396.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|213052942|ref|ZP_03345820.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
           serovar Typhi str. E00-7866]
 gi|213420337|ref|ZP_03353403.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
           serovar Typhi str. E01-6750]
 gi|213427012|ref|ZP_03359762.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
           serovar Typhi str. E02-1180]
 gi|213581020|ref|ZP_03362846.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-0664]
 gi|213610191|ref|ZP_03370017.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-2068]
 gi|213647303|ref|ZP_03377356.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
           serovar Typhi str. J185]
 gi|224583187|ref|YP_002636985.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|238912394|ref|ZP_04656231.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
           serovar Tennessee str. CDC07-0191]
 gi|289827447|ref|ZP_06546059.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-3139]
 gi|75482044|sp|Q57M29|NUOB_SALCH RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|81416296|sp|Q7CQ50|NUOB_SALTY RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|81599848|sp|Q5PN54|NUOB_SALPA RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|81628072|sp|Q8XGN7|NUOB_SALTI RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|238065204|sp|B5EZK8|NUOB_SALA4 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|238065205|sp|A9MJ98|NUOB_SALAR RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|238065206|sp|B5FPG8|NUOB_SALDC RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|238065207|sp|B5R308|NUOB_SALEP RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|238065208|sp|B5RCF2|NUOB_SALG2 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|238065209|sp|B4TBJ3|NUOB_SALHS RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|238065210|sp|B4SYZ8|NUOB_SALNS RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|238065211|sp|A9N581|NUOB_SALPB RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|238065212|sp|B5BCL9|NUOB_SALPK RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|238065213|sp|B4TPK9|NUOB_SALSV RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|254767798|sp|C0Q040|NUOB_SALPC RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|25299003|pir||AE0797 NADH2 dehydrogenase (ubiquinone) (EC 1.6.5.3) - Salmonella enterica
           subsp. enterica serovar Typhi (strain CT18)
 gi|16420868|gb|AAL21228.1| NADH dehydrogenase I chain B [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|16503551|emb|CAD07559.1| NADH dehydrogenase I chain B [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29136678|gb|AAO68243.1| NADH dehydrogenase I chain B [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|56127033|gb|AAV76539.1| NADH dehydrogenase I chain B [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|62128530|gb|AAX66233.1| NADH dehydrogenase I chain B [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|160863875|gb|ABX20498.1| hypothetical protein SARI_00572 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
 gi|161362309|gb|ABX66077.1| hypothetical protein SPAB_00651 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194401818|gb|ACF62040.1| NADH-quinone oxidoreductase, B subunit [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194407458|gb|ACF67677.1| NADH-quinone oxidoreductase, B subunit [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194458667|gb|EDX47506.1| NADH-quinone oxidoreductase, B subunit [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194712246|gb|ACF91467.1| NADH-quinone oxidoreductase, B subunit [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|195631416|gb|EDX49976.1| NADH-quinone oxidoreductase, B subunit [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|197093186|emb|CAR58630.1| NADH dehydrogenase I chain B [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|197212946|gb|ACH50343.1| NADH-quinone oxidoreductase, B subunit [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197239951|gb|EDY22571.1| NADH-quinone oxidoreductase, B subunit [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197289718|gb|EDY29081.1| NADH-quinone oxidoreductase, B subunit [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|197936378|gb|ACH73711.1| NADH-quinone oxidoreductase, B subunit [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|199603746|gb|EDZ02291.1| NADH-quinone oxidoreductase, B subunit [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|204321518|gb|EDZ06717.1| NADH-quinone oxidoreductase, B subunit [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|205273223|emb|CAR38186.1| NADH dehydrogenase I chain B [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|205325363|gb|EDZ13202.1| NADH-quinone oxidoreductase, B subunit [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205327503|gb|EDZ14267.1| NADH-quinone oxidoreductase, B subunit [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205335598|gb|EDZ22362.1| NADH-quinone oxidoreductase, B subunit [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|205338322|gb|EDZ25086.1| NADH-quinone oxidoreductase, B subunit [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|205345026|gb|EDZ31790.1| NADH-quinone oxidoreductase, B subunit [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|205349478|gb|EDZ36109.1| NADH-quinone oxidoreductase, B subunit [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|206709548|emb|CAR33893.1| NADH dehydrogenase I chain B [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|224467714|gb|ACN45544.1| NADH dehydrogenase beta subunit [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|261247533|emb|CBG25360.1| NADH dehydrogenase I chain B [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|267994422|gb|ACY89307.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 14028S]
 gi|301158885|emb|CBW18398.1| NADH dehydrogenase I chain B [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|312913318|dbj|BAJ37292.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
           serovar Typhimurium str. T000240]
 gi|320086761|emb|CBY96533.1| NADH dehydrogenase I chain B [Salmonella enterica subsp. enterica
           serovar Weltevreden str. 2007-60-3289-1]
 gi|321222972|gb|EFX48043.1| NADH-ubiquinone oxidoreductase chain B [Salmonella enterica subsp.
           enterica serovar Typhimurium str. TN061786]
 gi|322617073|gb|EFY13979.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315996572]
 gi|322617621|gb|EFY14520.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-1]
 gi|322624749|gb|EFY21578.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-3]
 gi|322630298|gb|EFY27068.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-4]
 gi|322634479|gb|EFY31212.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-1]
 gi|322639189|gb|EFY35881.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-2]
 gi|322640052|gb|EFY36719.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 531954]
 gi|322645727|gb|EFY42251.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. NC_MB110209-0054]
 gi|322651503|gb|EFY47878.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. OH_2009072675]
 gi|322656062|gb|EFY52361.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. CASC_09SCPH15965]
 gi|322659415|gb|EFY55662.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 19N]
 gi|322665875|gb|EFY62058.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 81038-01]
 gi|322669885|gb|EFY66026.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. MD_MDA09249507]
 gi|322673871|gb|EFY69968.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 414877]
 gi|322678629|gb|EFY74685.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 366867]
 gi|322683575|gb|EFY79589.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 413180]
 gi|322687651|gb|EFY83621.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 446600]
 gi|322715376|gb|EFZ06947.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. A50]
 gi|323130658|gb|ADX18088.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 4/74]
 gi|323193515|gb|EFZ78720.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609458-1]
 gi|323198420|gb|EFZ83522.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556150-1]
 gi|323201934|gb|EFZ86996.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609460]
 gi|323208528|gb|EFZ93467.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 507440-20]
 gi|323209763|gb|EFZ94687.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556152]
 gi|323218299|gb|EGA03009.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB101509-0077]
 gi|323222944|gb|EGA07293.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB102109-0047]
 gi|323227379|gb|EGA11544.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB110209-0055]
 gi|323232294|gb|EGA16397.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB111609-0052]
 gi|323235672|gb|EGA19756.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009083312]
 gi|323241167|gb|EGA25203.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009085258]
 gi|323244909|gb|EGA28911.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315731156]
 gi|323250028|gb|EGA33922.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2009159199]
 gi|323254449|gb|EGA38264.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008282]
 gi|323254951|gb|EGA38742.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008283]
 gi|323260331|gb|EGA43950.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008284]
 gi|323268093|gb|EGA51570.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008285]
 gi|323270814|gb|EGA54252.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008287]
 gi|326624148|gb|EGE30493.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
           serovar Dublin str. 3246]
 gi|326628534|gb|EGE34877.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 9]
 gi|332989260|gb|AEF08243.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
           serovar Typhimurium str. UK-1]
          Length = 220

 Score =  207 bits (526), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 74/169 (43%), Positives = 107/169 (63%), Gaps = 3/169 (1%)

Query: 14  QSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQAS 73
                L+K +     +  E+ +K   +  +  +V W R  S+    FGL+CC VEM+ + 
Sbjct: 14  NDRYPLQKQEIVTDPLEQEV-NKNVFMGKLHDMVNWGRKNSIWPYNFGLSCCYVEMVTSF 72

Query: 74  MPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANG 132
              +D+ RFG    RASPRQ+D+M+VAGT   KMA  ++R+YDQM EP++VISMG+CAN 
Sbjct: 73  TAVHDVARFGAEVLRASPRQADLMVVAGTCFTKMAPVIQRLYDQMLEPKWVISMGACANS 132

Query: 133 GGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
           GG Y   YSVV+G D+ +PVD+Y+PGCPP  EA +  ++LLQ+ I +  
Sbjct: 133 GGMY-DIYSVVQGVDKFIPVDVYIPGCPPRPEAYMQALMLLQESIGKER 180


>gi|297201676|ref|ZP_06919073.1| NADH dehydrogenase subunit NuoB2 [Streptomyces sviceus ATCC 29083]
 gi|297147941|gb|EDY54985.2| NADH dehydrogenase subunit NuoB2 [Streptomyces sviceus ATCC 29083]
          Length = 234

 Score =  207 bits (526), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 78/136 (57%), Positives = 102/136 (75%), Gaps = 1/136 (0%)

Query: 46  LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR-ASPRQSDVMIVAGTLTN 104
           ++ W R  SL    FGLACCA+E + ASM R+D  R G  P    PRQ+D+M+V+GT+T+
Sbjct: 45  ILNWGRRYSLWVFNFGLACCAIEFIAASMARHDFIRLGVIPFAPGPRQADLMVVSGTVTD 104

Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164
           KMA A++R+Y+QMPEP+YVIS G+C+N GG Y  SYSV +G D+I+PVD+YVPGCPP  E
Sbjct: 105 KMAPAVKRLYEQMPEPKYVISFGACSNCGGPYWDSYSVTKGVDQIIPVDVYVPGCPPRPE 164

Query: 165 ALIYGILLLQKKIRRV 180
           AL+ GIL LQ+KI R 
Sbjct: 165 ALLQGILKLQEKIARE 180


>gi|326772151|ref|ZP_08231436.1| NADH dehydrogenase I, B subunit [Actinomyces viscosus C505]
 gi|326638284|gb|EGE39185.1| NADH dehydrogenase I, B subunit [Actinomyces viscosus C505]
          Length = 204

 Score =  207 bits (526), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 81/160 (50%), Positives = 119/160 (74%), Gaps = 2/160 (1%)

Query: 21  KVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLE 80
           K +  ++  ++E+ + GFL+T+V++L   A+  S+  +T GLACCA+EMM A  PR+D+ 
Sbjct: 14  KRNDPYAAAAAEVDNPGFLLTTVEKLAGLAQARSMWPVTMGLACCAIEMMAAGTPRFDMA 73

Query: 81  RFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS 139
           RFG+   RASPR +DVMIV+G +++KMA  +R VYD MPEP++VISMG+CA+ GG ++  
Sbjct: 74  RFGWEVFRASPRHADVMIVSGRVSHKMAPIVRNVYDSMPEPKWVISMGACASSGGIFNN- 132

Query: 140 YSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           Y+VV+GCD IVPVDIY+PGCPP  E L+  +L L ++I +
Sbjct: 133 YAVVQGCDHIVPVDIYLPGCPPRPEMLLNAMLELTRQIEK 172


>gi|157144782|ref|YP_001452101.1| NADH dehydrogenase subunit B [Citrobacter koseri ATCC BAA-895]
 gi|238055287|sp|A8ADV2|NUOB_CITK8 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|157081987|gb|ABV11665.1| hypothetical protein CKO_00509 [Citrobacter koseri ATCC BAA-895]
          Length = 224

 Score =  207 bits (526), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 76/172 (44%), Positives = 107/172 (62%), Gaps = 5/172 (2%)

Query: 14  QSSCSLEKVDADFSRISSEITHK---GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMM 70
                L+K +     +  EI      G L  ++  +V W R  S+    FGL+CC VEM+
Sbjct: 14  NDRYPLQKQEIVTDPLEQEINKSVYMGKLEHALHDMVNWGRKNSIWPYNFGLSCCYVEMV 73

Query: 71  QASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSC 129
            +    +D+ RFG    RASPRQ+D+M+VAGT   KMA  ++R+YDQM EP++VISMG+C
Sbjct: 74  TSFTAVHDVARFGAEVLRASPRQADLMVVAGTCFTKMAPVIQRLYDQMLEPKWVISMGAC 133

Query: 130 ANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
           AN GG Y   YSVV+G D+ +PVD+Y+PGCPP  EA +  ++LLQ+ I +  
Sbjct: 134 ANSGGMY-DIYSVVQGVDKFIPVDVYIPGCPPRPEAYMQALMLLQESIGKER 184


>gi|54024635|ref|YP_118877.1| NADH dehydrogenase subunit B [Nocardia farcinica IFM 10152]
 gi|81602742|sp|Q5YWC8|NUOB_NOCFA RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|54016143|dbj|BAD57513.1| putative NADH dehydrogenase I chain B [Nocardia farcinica IFM
           10152]
          Length = 184

 Score =  207 bits (526), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 78/151 (51%), Positives = 105/151 (69%), Gaps = 2/151 (1%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89
            E    GFL+++V+    + R GS+   TFGLACCA+EMM     R+D+ RFG    RAS
Sbjct: 4   EEKLPSGFLLSTVESFAGYLRKGSVWPATFGLACCAIEMMATGAGRFDIARFGMEAFRAS 63

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQ+D+MIVAG ++ KMA  LR+VYDQM EP++V++MG CA+ GG ++  Y+VV+G D +
Sbjct: 64  PRQADLMIVAGRVSQKMAPVLRQVYDQMAEPKWVLAMGVCASSGGMFNN-YAVVQGVDHV 122

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           VPVDIY+PGCPP  E L+  IL L  KI+  
Sbjct: 123 VPVDIYLPGCPPRPEMLLNAILALHDKIQHT 153


>gi|237732318|ref|ZP_04562799.1| trifunctional NADH dehydrogenase I subunit B/C/D [Citrobacter sp.
           30_2]
 gi|283832283|ref|ZP_06352024.1| NADH dehydrogenase I subunit B [Citrobacter youngae ATCC 29220]
 gi|226907857|gb|EEH93775.1| trifunctional NADH dehydrogenase I subunit B/C/D [Citrobacter sp.
           30_2]
 gi|291071927|gb|EFE10036.1| NADH dehydrogenase I subunit B [Citrobacter youngae ATCC 29220]
          Length = 220

 Score =  207 bits (526), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 74/169 (43%), Positives = 106/169 (62%), Gaps = 3/169 (1%)

Query: 14  QSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQAS 73
                L+K +     +  E+ +K   +  +  +V W R  S+    FGL+CC VEM+ + 
Sbjct: 14  NDRYPLQKQEIVTDPLEQEV-NKNVFMGKLHDMVNWGRKNSIWPYNFGLSCCYVEMVTSF 72

Query: 74  MPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANG 132
              +D+ RFG    RASPRQ+D+M+VAGT   KMA  ++R+YDQM EP++VISMG+CAN 
Sbjct: 73  TAVHDVARFGAEVLRASPRQADLMVVAGTCFTKMAPVIQRLYDQMLEPKWVISMGACANS 132

Query: 133 GGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
           GG Y   YSVV+G D+ +PVD+Y+PGCPP  EA +  ++LLQ  I +  
Sbjct: 133 GGMY-DIYSVVQGVDKFIPVDVYIPGCPPRPEAYMQALMLLQDSIGKER 180


>gi|257459165|ref|ZP_05624284.1| NADH-quinone oxidoreductase, B subunit [Campylobacter gracilis
           RM3268]
 gi|257443550|gb|EEV18674.1| NADH-quinone oxidoreductase, B subunit [Campylobacter gracilis
           RM3268]
          Length = 169

 Score =  206 bits (525), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 84/141 (59%), Positives = 110/141 (78%), Gaps = 1/141 (0%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
            ++T+VD+L+ W R+ SL  MT+GLACCA+EMM A   R+D +RFG   RAS +QSDVMI
Sbjct: 16  VVLTTVDKLIAWGRSNSLWAMTYGLACCAIEMMAAGAGRFDFDRFGTIFRASAKQSDVMI 75

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           +AGTL+ K A   RR+YD MPEP++VISMGSCAN GG ++ +Y+ V+GCDRIVPVDIY+P
Sbjct: 76  IAGTLSKKHAEFTRRLYDAMPEPKWVISMGSCANTGGMFN-TYATVQGCDRIVPVDIYLP 134

Query: 158 GCPPTAEALIYGILLLQKKIR 178
           GC P  E L + +++LQKKIR
Sbjct: 135 GCAPRPETLQFAMMVLQKKIR 155


>gi|92115246|ref|YP_575174.1| NADH dehydrogenase subunit B [Chromohalobacter salexigens DSM 3043]
 gi|122419105|sp|Q1QST3|NUOB_CHRSD RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|91798336|gb|ABE60475.1| NADH dehydrogenase subunit B [Chromohalobacter salexigens DSM 3043]
          Length = 226

 Score =  206 bits (525), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 79/184 (42%), Positives = 111/184 (60%), Gaps = 7/184 (3%)

Query: 3   LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQL----VTWARTGSLMWM 58
           LT  +Q+     +S  L + ++    +  ++ H+      ++ +    V W R  SL   
Sbjct: 5   LTRADQEPAPDGASYPLGRRESTSDPMQEQV-HRNVFTGKLEDVLNSTVNWGRKHSLWPY 63

Query: 59  TFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQM 117
            FGL+CC VEM  A    +D+ RFG    RASPRQ+D M++AGT   KMA  ++++YDQM
Sbjct: 64  NFGLSCCYVEMTTAFTAPHDVARFGSEVIRASPRQADFMVIAGTCFIKMAPVIQQLYDQM 123

Query: 118 PEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
            EP++VISMGSCAN GG Y   YSVV+G D+ +PVD+YVPGCPP  EA + G+ LLQ  I
Sbjct: 124 LEPKWVISMGSCANSGGMY-DIYSVVQGVDKFLPVDVYVPGCPPRPEAFLQGLQLLQDSI 182

Query: 178 RRVG 181
           +   
Sbjct: 183 QEER 186


>gi|156351435|ref|XP_001622510.1| hypothetical protein NEMVEDRAFT_v1g220626 [Nematostella vectensis]
 gi|156209067|gb|EDO30410.1| predicted protein [Nematostella vectensis]
          Length = 133

 Score =  206 bits (525), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 102/121 (84%), Positives = 113/121 (93%)

Query: 58  MTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQM 117
           MTFGLACCAVEMM  + PRYD++RFG   RASPRQ+DVMIVAGTLTNKMA ALR+VYDQM
Sbjct: 1   MTFGLACCAVEMMHFAAPRYDMDRFGVVFRASPRQADVMIVAGTLTNKMAPALRKVYDQM 60

Query: 118 PEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
           PEPR+VISMGSCANGGGYYHYSYSVVRGCDR++PVDIYVPGCPPTAEAL+YG+L LQKK+
Sbjct: 61  PEPRWVISMGSCANGGGYYHYSYSVVRGCDRVIPVDIYVPGCPPTAEALLYGVLQLQKKV 120

Query: 178 R 178
           R
Sbjct: 121 R 121


>gi|268591136|ref|ZP_06125357.1| NADH dehydrogenase I subunit B [Providencia rettgeri DSM 1131]
 gi|291313438|gb|EFE53891.1| NADH dehydrogenase I subunit B [Providencia rettgeri DSM 1131]
          Length = 224

 Score =  206 bits (525), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 79/181 (43%), Positives = 111/181 (61%), Gaps = 3/181 (1%)

Query: 3   LTTVNQKIISGQSSCSLEKVDAD-FSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFG 61
           LT ++    + +     +K+  D   +      + G L  ++  +V W R  SL    FG
Sbjct: 5   LTRIDPNGENDRYPLQTQKIVTDPLEQQVENSVYMGKLSHALHDVVNWGRKNSLWPYNFG 64

Query: 62  LACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           L+CC VEM+ +    +D+ RFG    RASPRQ+D M+VAGT   KMA  ++R+YDQM EP
Sbjct: 65  LSCCYVEMVTSFTAVHDVARFGAEVLRASPRQADFMVVAGTCFTKMAPVIQRLYDQMLEP 124

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           ++VISMGSCAN GG Y   YSVV+G D+ +PVD+Y+PGCPP  EA +  +LLLQ+ I + 
Sbjct: 125 KWVISMGSCANSGGMY-DIYSVVQGVDKFIPVDVYIPGCPPRPEAYMQALLLLQESIGKE 183

Query: 181 G 181
            
Sbjct: 184 R 184


>gi|152971215|ref|YP_001336324.1| NADH dehydrogenase subunit B [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|206576675|ref|YP_002237325.1| NADH-quinone oxidoreductase, B subunit [Klebsiella pneumoniae 342]
 gi|238895804|ref|YP_002920540.1| NADH dehydrogenase subunit B [Klebsiella pneumoniae NTUH-K2044]
 gi|262043327|ref|ZP_06016456.1| NADH dehydrogenase I subunit B [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|288934255|ref|YP_003438314.1| NADH-quinone oxidoreductase subunit beta [Klebsiella variicola
           At-22]
 gi|290508458|ref|ZP_06547829.1| NADH dehydrogenase I subunit B [Klebsiella sp. 1_1_55]
 gi|311278756|ref|YP_003940987.1| NADH-quinone oxidoreductase, B subunit [Enterobacter cloacae SCF1]
 gi|330003557|ref|ZP_08304672.1| NADH dehydrogenase I subunit B [Klebsiella sp. MS 92-3]
 gi|238065162|sp|B5XNV5|NUOB_KLEP3 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|238065163|sp|A6TBX3|NUOB_KLEP7 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|150956064|gb|ABR78094.1| NADH dehydrogenase beta subunit [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|206565733|gb|ACI07509.1| NADH-quinone oxidoreductase, B subunit [Klebsiella pneumoniae 342]
 gi|238548122|dbj|BAH64473.1| NADH dehydrogenase beta subunit [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
 gi|259039351|gb|EEW40493.1| NADH dehydrogenase I subunit B [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|288888984|gb|ADC57302.1| NADH-quinone oxidoreductase, B subunit [Klebsiella variicola At-22]
 gi|289777852|gb|EFD85849.1| NADH dehydrogenase I subunit B [Klebsiella sp. 1_1_55]
 gi|308747951|gb|ADO47703.1| NADH-quinone oxidoreductase, B subunit [Enterobacter cloacae SCF1]
 gi|328536897|gb|EGF63196.1| NADH dehydrogenase I subunit B [Klebsiella sp. MS 92-3]
          Length = 224

 Score =  206 bits (525), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 75/172 (43%), Positives = 107/172 (62%), Gaps = 5/172 (2%)

Query: 14  QSSCSLEKVDADFSRISSEITHK---GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMM 70
                L+K +     +  E+      G L  ++  +V W R  S+    FGL+CC VEM+
Sbjct: 14  NDRYPLQKQEIVTDPLEQEVNKSVYMGKLEHALHDMVNWGRKNSIWPYNFGLSCCYVEMV 73

Query: 71  QASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSC 129
            +    +D+ RFG    RASPRQ+D+M+VAGT   KMA  ++R+YDQM EP++VISMG+C
Sbjct: 74  TSFTAVHDVARFGAEVLRASPRQADLMVVAGTCFTKMAPVIQRLYDQMLEPKWVISMGAC 133

Query: 130 ANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
           AN GG Y   YSVV+G D+ +PVD+Y+PGCPP  EA +  ++LLQ+ I +  
Sbjct: 134 ANSGGMY-DIYSVVQGVDKFIPVDVYIPGCPPRPEAYMQALMLLQESIGKER 184


>gi|193787188|dbj|BAG52394.1| unnamed protein product [Homo sapiens]
          Length = 206

 Score =  206 bits (525), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 104/163 (63%), Positives = 120/163 (73%), Gaps = 4/163 (2%)

Query: 6   VNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACC 65
           V+Q + +   S +   +    +      +   ++V  +D LV WAR  SL  MTFGLACC
Sbjct: 30  VHQSVATDGPSSTQPALPKARAVAPKPSSRGEYVVAKLDDLVNWARRSSLWPMTFGLACC 89

Query: 66  AVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVIS 125
           AVEMM  + PRYD++RFG   RASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYV+S
Sbjct: 90  AVEMMHMAAPRYDMDRFGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVVS 149

Query: 126 MGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPG----CPPTAE 164
           MGSCANGGGYYHYSYSVVRGCDRIVPVDIY+PG     PPT E
Sbjct: 150 MGSCANGGGYYHYSYSVVRGCDRIVPVDIYIPGRAGTAPPTRE 192


>gi|118617947|ref|YP_906279.1| NADH dehydrogenase subunit B [Mycobacterium ulcerans Agy99]
 gi|183981497|ref|YP_001849788.1| NADH dehydrogenase I (chain B) NuoB (NADH- ubiquinone
           oxidoreductase chain B) [Mycobacterium marinum M]
 gi|238065178|sp|B2HGE7|NUOB_MYCMM RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|238065182|sp|A0PR39|NUOB_MYCUA RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|118570057|gb|ABL04808.1| NADH dehydrogenase I (chain B) NuoB (NADH- ubiquinone
           oxidoreductase chain B) [Mycobacterium ulcerans Agy99]
 gi|183174823|gb|ACC39933.1| NADH dehydrogenase I (chain B) NuoB (NADH- ubiquinone
           oxidoreductase chain B) [Mycobacterium marinum M]
          Length = 184

 Score =  206 bits (525), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 74/151 (49%), Positives = 109/151 (72%), Gaps = 2/151 (1%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89
            E    G L+++V+++  + R  SL   TFGLACCA+EMM  + PR+D+ RFG     A+
Sbjct: 4   EEQLPGGILLSTVEKVAGYVRKNSLWPATFGLACCAIEMMATAGPRFDIARFGMERFSAT 63

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQ+D+MIVAG ++ KMA  LR++YDQM EP++V++MG CA+ GG ++  Y++V+G D +
Sbjct: 64  PRQADLMIVAGRVSQKMAPVLRQIYDQMAEPKWVLAMGVCASSGGMFNN-YAIVQGVDHV 122

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           VPVDIY+PGCPP  E L++ IL L +KI+ +
Sbjct: 123 VPVDIYLPGCPPRPEMLLHAILKLHEKIQEM 153


>gi|269955278|ref|YP_003325067.1| NADH-quinone oxidoreductase subunit B [Xylanimonas cellulosilytica
           DSM 15894]
 gi|269303959|gb|ACZ29509.1| NADH-quinone oxidoreductase, B subunit [Xylanimonas cellulosilytica
           DSM 15894]
          Length = 183

 Score =  206 bits (525), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 81/147 (55%), Positives = 107/147 (72%), Gaps = 2/147 (1%)

Query: 32  EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASP 90
           E    GFL+T+++ L  + R  SL  +TFGLACCA+EMM A   R+DL RFG    RASP
Sbjct: 4   EEAPSGFLLTTIEDLAGYLRKASLWPVTFGLACCAIEMMAAGASRFDLSRFGMEVFRASP 63

Query: 91  RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150
           RQ+D+MIVAG ++ KMA  +R+VYDQM EP++V+SMG CA+ GG ++  Y++V+G D IV
Sbjct: 64  RQADLMIVAGRVSQKMAPVVRQVYDQMSEPKWVLSMGVCASSGGMFNN-YAIVQGVDHIV 122

Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKI 177
           PVDIY+PGCPP  E LI  IL L ++I
Sbjct: 123 PVDIYLPGCPPRPEMLINAILALHQQI 149


>gi|163751847|ref|ZP_02159062.1| NADH dehydrogenase beta subunit [Shewanella benthica KT99]
 gi|161328263|gb|EDP99425.1| NADH dehydrogenase beta subunit [Shewanella benthica KT99]
          Length = 218

 Score =  206 bits (524), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 75/149 (50%), Positives = 107/149 (71%), Gaps = 2/149 (1%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RAS 89
            E+  K  L+T ++ LV W R+ SL    FGL+CC VEM  +   R+D+ RFG    RA+
Sbjct: 24  QEVVEKNLLITRLEDLVAWGRSNSLWPFNFGLSCCYVEMATSFTSRHDIARFGSEVIRAT 83

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PR++D+++++GT+  KMA  ++ +YDQM EP++VISMGSCAN GG Y   YSVV+G D+ 
Sbjct: 84  PREADLIVISGTVFLKMAPVIKHLYDQMLEPKWVISMGSCANSGGMY-DVYSVVQGADKF 142

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           +P+D+YVPGCPP  EAL+YG+ LLQ+ I+
Sbjct: 143 LPIDLYVPGCPPRPEALMYGLTLLQEAIK 171


>gi|284034168|ref|YP_003384099.1| NADH-quinone oxidoreductase subunit B [Kribbella flavida DSM 17836]
 gi|283813461|gb|ADB35300.1| NADH-quinone oxidoreductase, B subunit [Kribbella flavida DSM
           17836]
          Length = 184

 Score =  206 bits (524), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 75/150 (50%), Positives = 102/150 (68%), Gaps = 2/150 (1%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89
            E    G L+T+++ L  + R  SL   TFGLACCA+EMM    PRYD  RFG    RAS
Sbjct: 4   EEQLPAGVLLTTIEGLSGYMRKASLWPATFGLACCAIEMMTTGAPRYDAARFGMEVFRAS 63

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQ+D+MIVAG ++ KMA  LR++YDQMP P++V++MG CA+ GG ++  Y++V+G D +
Sbjct: 64  PRQADLMIVAGRVSQKMAPVLRQIYDQMPNPKWVLAMGVCASSGGMFNN-YAIVQGVDHV 122

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           VPVD+Y+PGCPP  E L+   L L   I+ 
Sbjct: 123 VPVDMYLPGCPPRPEMLLDAFLKLHDDIQH 152


>gi|182436717|ref|YP_001824436.1| putative NADH dehydrogenase chain B [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|238065043|sp|B1W4V9|NUOB2_STRGG RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName:
           Full=NADH dehydrogenase I subunit B 2; AltName:
           Full=NDH-1 subunit B 2
 gi|178465233|dbj|BAG19753.1| putative NADH dehydrogenase chain B [Streptomyces griseus subsp.
           griseus NBRC 13350]
          Length = 235

 Score =  206 bits (524), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 86/182 (47%), Positives = 113/182 (62%), Gaps = 4/182 (2%)

Query: 1   MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVT-SVDQLVTWARTGSLMWMT 59
           MGLT+         +S      D         +     L    +  ++ W R  SL    
Sbjct: 1   MGLTSRPTPASRQPASPP--PADPVLLPEPKRLGVLSRLAPEPMKVVLNWGRRYSLWVFN 58

Query: 60  FGLACCAVEMMQASMPRYDLERFGFAPR-ASPRQSDVMIVAGTLTNKMASALRRVYDQMP 118
           FGLACCA+E + ASM R+D  R G  P    PRQ+D+MIV+GT+T+KMA A++R+Y+QMP
Sbjct: 59  FGLACCAIEFIAASMARHDFIRLGVIPFAPGPRQADLMIVSGTVTDKMAPAVKRLYEQMP 118

Query: 119 EPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           EP+YVIS G+C+N GG Y  SYSV +G D+I+PVD+YVPGCPP  EAL+ GIL LQ+KI 
Sbjct: 119 EPKYVISFGACSNCGGPYWDSYSVTKGVDQIIPVDVYVPGCPPRPEALLQGILKLQEKIA 178

Query: 179 RV 180
           R 
Sbjct: 179 RE 180


>gi|215413013|ref|ZP_03421714.1| NADH dehydrogenase subunit B [Mycobacterium tuberculosis 94_M4241A]
 gi|298526620|ref|ZP_07014029.1| NADH dehydrogenase I, B subunit [Mycobacterium tuberculosis
           94_M4241A]
 gi|298496414|gb|EFI31708.1| NADH dehydrogenase I, B subunit [Mycobacterium tuberculosis
           94_M4241A]
          Length = 184

 Score =  206 bits (524), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 74/151 (49%), Positives = 110/151 (72%), Gaps = 2/151 (1%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89
            E    G L+++V+++  + R  SL   TFGLACCA+EMM  + PR+D+ RFG     A+
Sbjct: 4   EEQLPGGILLSNVEKVAGYVRKNSLWPATFGLACCAIEMMATAGPRFDIARFGMERFSAT 63

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQ+D+MIVAG ++ KMA  LR++YDQM EP++V++MG CA+ GG ++  Y++V+G D +
Sbjct: 64  PRQADLMIVAGRVSQKMAPVLRQIYDQMAEPKWVLAMGVCASSGGMFNN-YAIVQGVDHV 122

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           VPVDIY+PGCPP  E L++ IL L +KI+++
Sbjct: 123 VPVDIYLPGCPPRPEMLLHAILKLHEKIQQM 153


>gi|325067538|ref|ZP_08126211.1| NADH-quinone oxidoreductase, B subunit [Actinomyces oris K20]
          Length = 207

 Score =  206 bits (524), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 81/160 (50%), Positives = 118/160 (73%), Gaps = 2/160 (1%)

Query: 21  KVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLE 80
           K +  ++  ++E+   GFL+T+V++L   A+  S+  +T GLACCA+EMM A  PR+D+ 
Sbjct: 17  KRNDPYAAAAAEVDSPGFLLTTVEKLAGLAQARSMWPVTMGLACCAIEMMAAGTPRFDMA 76

Query: 81  RFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS 139
           RFG+   RASPR +DVMIV+G +++KMA  +R VYD MPEP++VISMG+CA+ GG ++  
Sbjct: 77  RFGWEVFRASPRHADVMIVSGRVSHKMAPIVRNVYDSMPEPKWVISMGACASSGGIFNN- 135

Query: 140 YSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           Y+VV+GCD IVPVDIY+PGCPP  E L+  +L L ++I +
Sbjct: 136 YAVVQGCDHIVPVDIYLPGCPPRPEMLLNAMLELTRQIEK 175


>gi|302553480|ref|ZP_07305822.1| NADH dehydrogenase subunit I B [Streptomyces viridochromogenes DSM
           40736]
 gi|302471098|gb|EFL34191.1| NADH dehydrogenase subunit I B [Streptomyces viridochromogenes DSM
           40736]
          Length = 206

 Score =  206 bits (524), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 78/136 (57%), Positives = 102/136 (75%), Gaps = 1/136 (0%)

Query: 46  LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR-ASPRQSDVMIVAGTLTN 104
           ++ W R  SL    FGLACCA+E + ASM R+D  R G  P    PRQ+D+M+V+GT+T+
Sbjct: 30  ILNWGRRYSLWVFNFGLACCAIEFIAASMARHDFIRLGVIPFAPGPRQADLMVVSGTVTD 89

Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164
           KMA A++R+Y+QMPEP+YVIS G+C+N GG Y  SYSV +G D+I+PVD+YVPGCPP  E
Sbjct: 90  KMAPAVKRLYEQMPEPKYVISFGACSNCGGPYWDSYSVTKGVDQIIPVDVYVPGCPPRPE 149

Query: 165 ALIYGILLLQKKIRRV 180
           AL+ GIL LQ+KI R 
Sbjct: 150 ALLQGILKLQEKIARE 165


>gi|111022873|ref|YP_705845.1| NADH dehydrogenase subunit B [Rhodococcus jostii RHA1]
 gi|122955232|sp|Q0S449|NUOB_RHOSR RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|110822403|gb|ABG97687.1| probable NADH dehydrogenase subunit B [Rhodococcus jostii RHA1]
          Length = 184

 Score =  206 bits (524), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 79/151 (52%), Positives = 110/151 (72%), Gaps = 2/151 (1%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89
            E    GFL+T+V+ L  + R GSL   +FGLACCA+EMM  +  R+D+ RFG    RAS
Sbjct: 4   EEKLPSGFLLTTVEGLAGYVRKGSLWPASFGLACCAIEMMATAGGRFDIARFGMEAFRAS 63

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQ+D+MIVAG ++ KMA  LR++YDQM EP++V++MG CA+ GG ++  Y++V+G D I
Sbjct: 64  PRQADLMIVAGRVSQKMAPVLRQIYDQMVEPKWVLAMGVCASSGGMFNN-YAIVQGVDHI 122

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           VPVDIY+PGCPP  E L+  IL L +KI+++
Sbjct: 123 VPVDIYLPGCPPRPEMLLNAILTLHEKIQQM 153


>gi|118474832|ref|YP_891363.1| NADH-quinone oxidoreductase chain b [Campylobacter fetus subsp.
           fetus 82-40]
 gi|238055277|sp|A0RMD0|NUOB_CAMFF RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|118414058|gb|ABK82478.1| NADH-quinone oxidoreductase chain b [Campylobacter fetus subsp.
           fetus 82-40]
          Length = 168

 Score =  206 bits (524), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 70/151 (46%), Positives = 100/151 (66%), Gaps = 2/151 (1%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RAS 89
             +     ++T +D L  W R  SL  M FG ACCA+E M A   ++DL RFG    R S
Sbjct: 4   ENLVQNDVVLTRLDALFNWGRKNSLWPMIFGTACCAIEFMSAVSSKHDLSRFGAEVMRFS 63

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQ+D+MI+AGT++ K A  L+ +YDQM EP++V+SMG+CA  GG ++ +Y+ ++G D+I
Sbjct: 64  PRQADLMIIAGTISFKQAPILKEIYDQMCEPKWVVSMGACACSGG-FYDNYTTLQGIDQI 122

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           +PVD+Y+ GCPP  EA+I  IL +Q KI   
Sbjct: 123 IPVDVYISGCPPRPEAIIDAILAIQDKISNE 153


>gi|317051070|ref|YP_004112186.1| NADH-quinone oxidoreductase subunit B [Desulfurispirillum indicum
           S5]
 gi|316946154|gb|ADU65630.1| NADH-quinone oxidoreductase, B subunit [Desulfurispirillum indicum
           S5]
          Length = 183

 Score =  206 bits (524), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 69/146 (47%), Positives = 105/146 (71%), Gaps = 2/146 (1%)

Query: 36  KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSD 94
              + T++D +V WAR  SL  MTFG ACCA+E M A+  ++DL RFG    R SPRQ+D
Sbjct: 13  DSVITTTMDAVVNWARQYSLWPMTFGTACCAIEFMSAAASQHDLSRFGAEVIRFSPRQAD 72

Query: 95  VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154
           +++VAGT++ K A  L+R+Y+QMP+P++VISMG+CA  GG ++ +Y  ++G D+++PVD 
Sbjct: 73  LLLVAGTISMKQAPVLKRIYEQMPDPKWVISMGACACSGG-FYDNYCTLQGIDQVIPVDA 131

Query: 155 YVPGCPPTAEALIYGILLLQKKIRRV 180
           Y+ GCPP  EA++  + L+QKK++  
Sbjct: 132 YISGCPPRPEAILDALFLIQKKLKEE 157


>gi|226365381|ref|YP_002783164.1| NADH dehydrogenase subunit B [Rhodococcus opacus B4]
 gi|254767797|sp|C1AYM4|NUOB_RHOOB RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|226243871|dbj|BAH54219.1| NADH-quinone oxidoreductase chain B [Rhodococcus opacus B4]
          Length = 184

 Score =  206 bits (524), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 79/151 (52%), Positives = 110/151 (72%), Gaps = 2/151 (1%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89
            E    GFL+T+V+ L  + R GSL   +FGLACCA+EMM  +  R+D+ RFG    RAS
Sbjct: 4   EEKLPSGFLLTTVEGLAGYVRKGSLWPASFGLACCAIEMMATAGGRFDIARFGMEAFRAS 63

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQ+D+MIVAG ++ KMA  LR++YDQM EP++V++MG CA+ GG ++  Y++V+G D I
Sbjct: 64  PRQADLMIVAGRVSQKMAPVLRQIYDQMVEPKWVLAMGVCASSGGMFNN-YAIVQGVDHI 122

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           VPVDIY+PGCPP  E L+  IL L +KI+++
Sbjct: 123 VPVDIYLPGCPPRPEMLLNAILTLHEKIQQM 153


>gi|261346156|ref|ZP_05973800.1| NADH dehydrogenase I subunit B [Providencia rustigianii DSM 4541]
 gi|282565809|gb|EFB71344.1| NADH dehydrogenase I subunit B [Providencia rustigianii DSM 4541]
          Length = 224

 Score =  206 bits (524), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 78/181 (43%), Positives = 111/181 (61%), Gaps = 3/181 (1%)

Query: 3   LTTVNQKIISGQSSCSLEKVDAD-FSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFG 61
           LT ++    + +     +++  D   +      + G L  ++  +V W R  SL    FG
Sbjct: 5   LTRIDPNGENDRYPLQTQEIVTDPLEQQVENSVYMGKLSHALHDVVNWGRKNSLWPYNFG 64

Query: 62  LACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           L+CC VEM+ +    +D+ RFG    RASPRQ+D M+VAGT   KMA  ++R+YDQM EP
Sbjct: 65  LSCCYVEMVTSFTSVHDVARFGAEVLRASPRQADFMVVAGTCFTKMAPVIQRLYDQMLEP 124

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           ++VISMGSCAN GG Y   YSVV+G D+ +PVD+Y+PGCPP  EA +  +LLLQ+ I + 
Sbjct: 125 KWVISMGSCANSGGMY-DIYSVVQGVDKFIPVDVYIPGCPPRPEAYMQALLLLQESIGKE 183

Query: 181 G 181
            
Sbjct: 184 R 184


>gi|261416729|ref|YP_003250412.1| NADH-quinone oxidoreductase, B subunit [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|261373185|gb|ACX75930.1| NADH-quinone oxidoreductase, B subunit [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|302325376|gb|ADL24577.1| NADH-quinone oxidoreductase, B/C subunit [Fibrobacter succinogenes
           subsp. succinogenes S85]
          Length = 419

 Score =  205 bits (523), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 73/156 (46%), Positives = 113/156 (72%), Gaps = 2/156 (1%)

Query: 27  SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA- 85
            +I   I    ++V ++D +V WAR  S+  +T+G +CCA+EMM +SM RYD+ RFG   
Sbjct: 8   PKILDPIPGGKYVVNAIDYVVNWARANSIWPLTYGTSCCAIEMMSSSMARYDIARFGSEV 67

Query: 86  PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVR 144
            R+SPRQ+D+ I+AGT+T +MA A++ +++Q+P P+YVI+MG+C   GG + + +YSVVR
Sbjct: 68  FRSSPRQADLFILAGTITRRMAPAIQMLWEQIPGPKYVIAMGACTISGGPFIYDNYSVVR 127

Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           G   ++PVD++VPGCPP  EAL +G+L L++KI + 
Sbjct: 128 GAQNLIPVDVFVPGCPPRPEALFHGLLTLREKILKE 163


>gi|290958206|ref|YP_003489388.1| NADH dehydrogenase subunit NuoB2 [Streptomyces scabiei 87.22]
 gi|260647732|emb|CBG70837.1| NADH dehydrogenase subunit NuoB2 [Streptomyces scabiei 87.22]
          Length = 226

 Score =  205 bits (523), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 83/173 (47%), Positives = 111/173 (64%), Gaps = 5/173 (2%)

Query: 13  GQSSCSLEKVDADFSRISSEITHKGFLVT----SVDQLVTWARTGSLMWMTFGLACCAVE 68
              +   +  DA    +  E    G L       +  ++ W R  SL    FGLACCA+E
Sbjct: 4   TPETNPSQAADAPGPVLLPEPKRLGALARLAPEPMKVILNWGRRYSLWVFNFGLACCAIE 63

Query: 69  MMQASMPRYDLERFGFAPR-ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMG 127
            + ASM R+D  R G  P    PRQ+D+M+V+GT+T+KMA A++R+Y+QMPEP+YVIS G
Sbjct: 64  FIAASMARHDFIRLGVIPFAPGPRQADLMVVSGTVTDKMAPAVKRLYEQMPEPKYVISFG 123

Query: 128 SCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           +C+N GG Y  SYSV +G D+I+PVD+YVPGCPP  EAL+ GIL LQ+KI R 
Sbjct: 124 ACSNCGGPYWDSYSVTKGVDQIIPVDVYVPGCPPRPEALLQGILKLQEKIARE 176


>gi|21222983|ref|NP_628762.1| NADH dehydrogenase subunit NuoB2 [Streptomyces coelicolor A3(2)]
 gi|81621857|sp|Q9F2W1|NUOB2_STRCO RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName:
           Full=NADH dehydrogenase I subunit B 2; AltName:
           Full=NDH-1 subunit B 2
 gi|10129745|emb|CAC08301.1| NADH dehydrogenase subunit NuoB2 [Streptomyces coelicolor A3(2)]
          Length = 232

 Score =  205 bits (523), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 78/136 (57%), Positives = 102/136 (75%), Gaps = 1/136 (0%)

Query: 46  LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR-ASPRQSDVMIVAGTLTN 104
           ++ W R  SL    FGLACCA+E + ASM R+D  R G  P    PRQ+D+M+V+GT+T+
Sbjct: 34  VLNWGRRYSLWVFNFGLACCAIEFIAASMARHDFIRLGVIPFAPGPRQADLMVVSGTVTD 93

Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164
           KMA A++R+Y+QMPEP+YVIS G+C+N GG Y  SYSV +G D+I+PVD+YVPGCPP  E
Sbjct: 94  KMAPAVKRLYEQMPEPKYVISFGACSNCGGPYWDSYSVTKGVDQIIPVDVYVPGCPPRPE 153

Query: 165 ALIYGILLLQKKIRRV 180
           AL+ GIL LQ+KI R 
Sbjct: 154 ALLQGILKLQEKIARE 169


>gi|283778533|ref|YP_003369288.1| NADH-quinone oxidoreductase, B subunit [Pirellula staleyi DSM 6068]
 gi|283436986|gb|ADB15428.1| NADH-quinone oxidoreductase, B subunit [Pirellula staleyi DSM 6068]
          Length = 192

 Score =  205 bits (523), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 73/151 (48%), Positives = 98/151 (64%), Gaps = 2/151 (1%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQ 92
             +  +VT +D+L  W R  SL  M F  ACC +E+M     R+DL RFG    R SPRQ
Sbjct: 5   LPENVMVTKLDELANWCRKNSLWPMPFATACCGIELMATGASRHDLARFGAEVFRFSPRQ 64

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
            D+MIVAG +  KM   L+R++ QM EP++ ISMG+CA+ GG +  +Y+VV+G DR +PV
Sbjct: 65  CDLMIVAGRVVMKMLPVLQRIWQQMHEPKWCISMGACASTGGVF-DTYAVVQGIDRFIPV 123

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           D+YVPGCPP  E L   I+ LQ KI+R G +
Sbjct: 124 DMYVPGCPPRPEQLTQAIIDLQDKIQREGTI 154


>gi|254480961|ref|ZP_05094207.1| NADH-quinone oxidoreductase, B subunit subfamily, putative [marine
           gamma proteobacterium HTCC2148]
 gi|41582331|gb|AAS07945.1| NADH-quinone oxidoreductase, B subunit [uncultured marine bacterium
           463]
 gi|214038756|gb|EEB79417.1| NADH-quinone oxidoreductase, B subunit subfamily, putative [marine
           gamma proteobacterium HTCC2148]
          Length = 214

 Score =  205 bits (523), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 71/152 (46%), Positives = 101/152 (66%), Gaps = 2/152 (1%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RAS 89
            E   +      ++ L+ W R  SL    FGL+CC VEM  +   R+D+ RFG    RA+
Sbjct: 24  EEQIKRNVFFARLEDLIAWGRAHSLWPFNFGLSCCYVEMATSFTSRHDIARFGSEVIRAT 83

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQ+D+M+++GT+  KMA  ++ +YDQ+ EPR++ISMGSCAN GG Y   YSVV+G D+ 
Sbjct: 84  PRQADLMVISGTVFRKMAPVVQHLYDQLLEPRWIISMGSCANSGGMY-DIYSVVQGVDKF 142

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
           +PVD+YVPGCPP  EAL+ G+++LQ  I +  
Sbjct: 143 IPVDVYVPGCPPRPEALMQGLMMLQDAIEQER 174


>gi|29831425|ref|NP_826059.1| NADH dehydrogenase I chain B [Streptomyces avermitilis MA-4680]
 gi|81718089|sp|Q82DT6|NUOB2_STRAW RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName:
           Full=NADH dehydrogenase I subunit B 2; AltName:
           Full=NDH-1 subunit B 2
 gi|29608540|dbj|BAC72594.1| putative NADH dehydrogenase I chain B (complex I) [Streptomyces
           avermitilis MA-4680]
          Length = 203

 Score =  205 bits (523), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 78/136 (57%), Positives = 102/136 (75%), Gaps = 1/136 (0%)

Query: 46  LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR-ASPRQSDVMIVAGTLTN 104
           ++ W R  SL    FGLACCA+E + ASM R+D  R G  P    PRQ+D+M+V+GT+T+
Sbjct: 30  VLNWGRRYSLWVFNFGLACCAIEFIAASMARHDFIRLGVIPFAPGPRQADLMVVSGTVTD 89

Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164
           KMA A++R+Y+QMPEP+YVIS G+C+N GG Y  SYSV +G D+I+PVD+YVPGCPP  E
Sbjct: 90  KMAPAVKRLYEQMPEPKYVISFGACSNCGGPYWDSYSVTKGVDQIIPVDVYVPGCPPRPE 149

Query: 165 ALIYGILLLQKKIRRV 180
           AL+ GIL LQ+KI R 
Sbjct: 150 ALLQGILKLQEKIARE 165


>gi|298246351|ref|ZP_06970157.1| NADH-quinone oxidoreductase, B subunit [Ktedonobacter racemifer DSM
           44963]
 gi|297553832|gb|EFH87697.1| NADH-quinone oxidoreductase, B subunit [Ktedonobacter racemifer DSM
           44963]
          Length = 200

 Score =  205 bits (523), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 83/180 (46%), Positives = 123/180 (68%), Gaps = 7/180 (3%)

Query: 1   MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTF 60
           MG+T   + + +  ++ +  ++      +  +    G L T V +++ W+R+ SL    F
Sbjct: 1   MGITNPWEPVQTYSNTQTPRELP-----MHQKDGSFGVLTTQVSKILDWSRSSSLWPALF 55

Query: 61  GLACCAVEMMQASMPRYDLERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119
           GLACCA+EMM  S  R+DL RFG    RASPRQ+D+MIVAG  + KMA  LR++YDQMPE
Sbjct: 56  GLACCAIEMMSTSASRFDLARFGAEVYRASPRQADLMIVAGRCSVKMAPVLRQIYDQMPE 115

Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           P++VISMG+CA+ GG ++  Y++V+G D+IVPVD+++PGCPPT + L++G   LQ+KIR 
Sbjct: 116 PKWVISMGACASCGGVFNN-YAIVQGVDKIVPVDVFIPGCPPTPDMLLFGFNELQRKIRE 174


>gi|26990814|ref|NP_746239.1| NADH dehydrogenase subunit B [Pseudomonas putida KT2440]
 gi|148546983|ref|YP_001267085.1| NADH dehydrogenase subunit B [Pseudomonas putida F1]
 gi|81586001|sp|Q88FH6|NUOB_PSEPK RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|238065196|sp|A5W191|NUOB_PSEP1 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|24985820|gb|AAN69703.1|AE016606_6 NADH dehydrogenase I, B subunit [Pseudomonas putida KT2440]
 gi|148511041|gb|ABQ77901.1| NADH-quinone oxidoreductase, B subunit [Pseudomonas putida F1]
 gi|313498030|gb|ADR59396.1| NuoB [Pseudomonas putida BIRD-1]
          Length = 225

 Score =  205 bits (523), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 75/175 (42%), Positives = 107/175 (61%), Gaps = 6/175 (3%)

Query: 12  SGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQL----VTWARTGSLMWMTFGLACCAV 67
           +      + + +    ++  +  HK   +  ++ +    V W R  SL    FGL+CC V
Sbjct: 12  APNEQYPVGERETVTDQLLEDQVHKNIFMGKLEDVLRGAVNWGRKNSLWPYNFGLSCCYV 71

Query: 68  EMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISM 126
           EM  A    +D+ RFG    RASPRQ+D M++AGT   KMA  ++R+Y+QM EP++VISM
Sbjct: 72  EMTTAFTAPHDIARFGAEVIRASPRQADFMVIAGTCFVKMAPIIQRLYEQMLEPKWVISM 131

Query: 127 GSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
           GSCAN GG Y   YSVV+G D+ +PVD+YVPGCPP  EA + G++LLQ+ I +  
Sbjct: 132 GSCANSGGMY-DIYSVVQGVDKFLPVDVYVPGCPPRPEAFLQGLMLLQESIGQER 185


>gi|332971177|gb|EGK10141.1| NADH-quinone oxidoreductase subunit B [Psychrobacter sp.
           1501(2011)]
          Length = 222

 Score =  205 bits (523), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 82/184 (44%), Positives = 107/184 (58%), Gaps = 11/184 (5%)

Query: 3   LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLV----TWARTGSLMWM 58
           LT  N    +  +       D        E  ++   +  ++ +V     W R  SL   
Sbjct: 5   LTRANPDADTYPAQTRQTVTDP-----LEEEVNRNVFMGKLEDMVHASANWGRKHSLWPF 59

Query: 59  TFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQM 117
            FG +CC VE        +DL RFG    RASPRQ+DVMIVAGT   KMA  ++R+Y+QM
Sbjct: 60  NFGTSCCYVEYATTLTAVHDLSRFGAEVIRASPRQADVMIVAGTCFVKMAPVIQRLYEQM 119

Query: 118 PEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
            EP++VISMGSCAN GG Y   YSVV+G D+I+PVD+YVPGCPP  EALI G++LLQ+ I
Sbjct: 120 LEPKWVISMGSCANSGGMY-DIYSVVQGVDKIIPVDVYVPGCPPRPEALIQGLMLLQESI 178

Query: 178 RRVG 181
            +  
Sbjct: 179 TKER 182


>gi|322801771|gb|EFZ22368.1| hypothetical protein SINV_15858 [Solenopsis invicta]
          Length = 189

 Score =  205 bits (523), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 94/154 (61%), Positives = 111/154 (72%)

Query: 5   TVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLAC 64
                +   ++    +     +S          + +  VD ++ W R GSL  MTFGLAC
Sbjct: 36  ATESSVQEAKTPLPGKPKVEPYSPFQGTDNTAEYALARVDDILNWGRKGSLWPMTFGLAC 95

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           CAVEMM  + PRYD++RFG   RASPRQSDV+IVAGTLTNKMA ALR++YDQMPEPR+VI
Sbjct: 96  CAVEMMHIAAPRYDMDRFGVVFRASPRQSDVIIVAGTLTNKMAPALRKIYDQMPEPRWVI 155

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPG 158
           SMGSCANGGGYYHYSYSVVRGCDRI+PVDIYVPG
Sbjct: 156 SMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVPG 189


>gi|182412567|ref|YP_001817633.1| NADH-quinone oxidoreductase, B subunit [Opitutus terrae PB90-1]
 gi|238065033|sp|B1ZUJ0|NUOB2_OPITP RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName:
           Full=NADH dehydrogenase I subunit B 2; AltName:
           Full=NDH-1 subunit B 2
 gi|177839781|gb|ACB74033.1| NADH-quinone oxidoreductase, B subunit [Opitutus terrae PB90-1]
          Length = 191

 Score =  205 bits (523), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 85/179 (47%), Positives = 109/179 (60%), Gaps = 7/179 (3%)

Query: 2   GLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFG 61
            LT   Q         +      +     S+I         +D L+   R  SL  +TFG
Sbjct: 4   PLTPSAQPAPMPSLVAATGPSTPEIPPEVSQIAR----FAKLDDLLALGRANSLWPLTFG 59

Query: 62  LACCAVEMMQASMPRYDLERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           LACCA+EMM A M R+D+ RFG    R SPRQ+DVMIVAGT+  KMA A++ +YDQM EP
Sbjct: 60  LACCAIEMMAAGMARFDISRFGAEVFRPSPRQADVMIVAGTVNKKMAPAVKLLYDQMLEP 119

Query: 121 RYVISMGSCANGGGYYHYS--YSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
           ++VI+MG CA  GG + Y   Y+VV G D++ PVD+YVPGCPP  EALI GIL L++KI
Sbjct: 120 KWVIAMGQCAISGGPFKYPGQYAVVEGVDQLFPVDVYVPGCPPRPEALIEGILKLEEKI 178


>gi|319950452|ref|ZP_08024366.1| NADH dehydrogenase subunit B [Dietzia cinnamea P4]
 gi|319435875|gb|EFV91081.1| NADH dehydrogenase subunit B [Dietzia cinnamea P4]
          Length = 184

 Score =  205 bits (523), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 85/151 (56%), Positives = 110/151 (72%), Gaps = 2/151 (1%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89
            E    GFL+T+V+QL  + R GSL   TFGLACCA+EMM  S  RYDL RFG    RAS
Sbjct: 4   EEKLPAGFLLTTVEQLAGYMRKGSLWPATFGLACCAIEMMATSGGRYDLARFGTEVFRAS 63

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQ+D+MIVAG ++ KMA  LR+VYDQM EP++V+SMG CA+ GG ++  Y++V+G D I
Sbjct: 64  PRQADLMIVAGRVSQKMAPVLRQVYDQMAEPKWVLSMGVCASSGGMFNN-YAIVQGVDHI 122

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           VPVDIY+PGCPP  E L++ I+ L  KI+ +
Sbjct: 123 VPVDIYLPGCPPRPEMLMHAIITLHDKIQNM 153


>gi|226227067|ref|YP_002761173.1| NADH-quinone oxidoreductase chain B [Gemmatimonas aurantiaca T-27]
 gi|226090258|dbj|BAH38703.1| NADH-quinone oxidoreductase chain B [Gemmatimonas aurantiaca T-27]
          Length = 212

 Score =  205 bits (523), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 77/148 (52%), Positives = 107/148 (72%), Gaps = 2/148 (1%)

Query: 35  HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA-SPRQS 93
           H G++ T +D LV W R GSL  M FG ACCA+E M  +  R+DL RFG    + SPRQ+
Sbjct: 23  HDGWITTRLDFLVNWGRAGSLWPMPFGTACCAIEFMATAASRFDLSRFGMERLSYSPRQA 82

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD 153
           DV++ AG +  K+A  LRR+Y QMP+P++VISMG+CA+ GG +  +Y+VV+G D I+PVD
Sbjct: 83  DVLLCAGRVPLKLAPVLRRIYQQMPQPKWVISMGACASTGGMF-DNYAVVQGIDTIIPVD 141

Query: 154 IYVPGCPPTAEALIYGILLLQKKIRRVG 181
           +YVPGCPP  EAL++ I++LQKK+ +  
Sbjct: 142 VYVPGCPPRPEALMHAIIMLQKKVMQER 169


>gi|326567954|gb|EGE18051.1| NADH dehydrogenase subunit B [Moraxella catarrhalis BC1]
 gi|326577449|gb|EGE27333.1| NADH dehydrogenase subunit B [Moraxella catarrhalis O35E]
          Length = 223

 Score =  205 bits (523), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 82/184 (44%), Positives = 105/184 (57%), Gaps = 11/184 (5%)

Query: 3   LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQL----VTWARTGSLMWM 58
           LT  NQ      +    ++       I+     K   +  +  L      W R  SL   
Sbjct: 5   LTKPNQ-----HTKQYPQQSREIIDDITQAEVDKNVFLGRLSDLTHNLANWGRKNSLWPF 59

Query: 59  TFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQM 117
            FG +CC VE        +DL RFG    RASPRQ+DVMIVAGT   KMA  + R+Y+QM
Sbjct: 60  NFGTSCCYVEYATTLTGVHDLSRFGAEVIRASPRQADVMIVAGTCFVKMAPVILRLYEQM 119

Query: 118 PEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
            EP++VISMG+CAN GG Y   YSVV+G D+I+PVD+YVPGCPP  EALI  I+LLQ+ I
Sbjct: 120 LEPKWVISMGACANSGGMY-DIYSVVQGVDKILPVDVYVPGCPPRPEALIQAIMLLQESI 178

Query: 178 RRVG 181
           ++  
Sbjct: 179 QKER 182


>gi|260551032|ref|ZP_05825237.1| NADH:ubiquinone oxidoreductase 20 kDa subunit [Acinetobacter sp.
           RUH2624]
 gi|262280145|ref|ZP_06057930.1| NADH-quinone oxidoreductase subunit C/D [Acinetobacter
           calcoaceticus RUH2202]
 gi|299771418|ref|YP_003733444.1| NADH dehydrogenase subunit B [Acinetobacter sp. DR1]
 gi|260405980|gb|EEW99467.1| NADH:ubiquinone oxidoreductase 20 kDa subunit [Acinetobacter sp.
           RUH2624]
 gi|262260496|gb|EEY79229.1| NADH-quinone oxidoreductase subunit C/D [Acinetobacter
           calcoaceticus RUH2202]
 gi|298701506|gb|ADI92071.1| NADH dehydrogenase subunit B [Acinetobacter sp. DR1]
          Length = 225

 Score =  205 bits (522), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 81/181 (44%), Positives = 109/181 (60%), Gaps = 11/181 (6%)

Query: 3   LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQL----VTWARTGSLMWM 58
           LT  N           L++       +  E+ +K   +T ++ +    V W R  SL   
Sbjct: 5   LTRANP----DADQYPLQERQIVTDPLEEEV-NKNVFMTRLEDVLHTAVNWGRKNSLWPF 59

Query: 59  TFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQM 117
            FG +CC VE        +DL RFG    RASPRQ+D+MIVAGT   KMA  ++R+Y+QM
Sbjct: 60  NFGTSCCYVEYATTLTGVHDLSRFGAEVIRASPRQADLMIVAGTCFVKMAPVIQRLYEQM 119

Query: 118 PEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
            EP++VISMG+CAN GG Y   YSVV+G D+I+PVD+YVPGCPP  EALI  ++LLQ +I
Sbjct: 120 LEPKWVISMGACANSGGMY-DIYSVVQGVDKIIPVDVYVPGCPPRPEALIQALMLLQDQI 178

Query: 178 R 178
           +
Sbjct: 179 Q 179


>gi|149034568|gb|EDL89305.1| NADH dehydrogenase (ubiquinone) Fe-S protein 7, isoform CRA_a
           [Rattus norvegicus]
          Length = 210

 Score =  205 bits (522), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 101/156 (64%), Positives = 118/156 (75%), Gaps = 5/156 (3%)

Query: 2   GLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFG 61
           G  +  Q  +S   + ++    +   R  +E     ++VT +D L+ WAR  SL  MTFG
Sbjct: 36  GSPSSTQSAVSKAGAGAVVPKPSHLPRSRAE-----YVVTKLDDLINWARRSSLWPMTFG 90

Query: 62  LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPR 121
           LACCAVEMM  + PRYD++RFG   RASPRQ+DVMIVAGTLTNKMA ALR+VYDQMPEPR
Sbjct: 91  LACCAVEMMHMAAPRYDMDRFGVVFRASPRQADVMIVAGTLTNKMAPALRKVYDQMPEPR 150

Query: 122 YVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           YV+SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP
Sbjct: 151 YVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 186


>gi|284034118|ref|YP_003384049.1| NADH-quinone oxidoreductase subunit B [Kribbella flavida DSM 17836]
 gi|283813411|gb|ADB35250.1| NADH-quinone oxidoreductase, B subunit [Kribbella flavida DSM
           17836]
          Length = 178

 Score =  205 bits (522), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 79/133 (59%), Positives = 100/133 (75%), Gaps = 1/133 (0%)

Query: 46  LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR-ASPRQSDVMIVAGTLTN 104
           L+ W R  SL    FGLACCA+E + ASM R+D  R G  P    PRQ+D+M+V+GT+T+
Sbjct: 22  LLNWGRKYSLWVFNFGLACCAIEFIAASMGRHDFIRLGVIPFAPGPRQADLMVVSGTVTD 81

Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164
           KMA A++R+YDQMPEP+YVIS GSC+N GG Y  SY V +G D+I+PVD+YVPGCPP  E
Sbjct: 82  KMAPAIKRLYDQMPEPKYVISFGSCSNSGGPYWDSYCVTKGVDQIIPVDVYVPGCPPRPE 141

Query: 165 ALIYGILLLQKKI 177
           AL+ GIL LQ+KI
Sbjct: 142 ALLQGILKLQEKI 154


>gi|301631485|ref|XP_002944828.1| PREDICTED: NADH-quinone oxidoreductase subunit B-like [Xenopus
           (Silurana) tropicalis]
          Length = 164

 Score =  205 bits (522), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 103/136 (75%), Positives = 117/136 (86%), Gaps = 1/136 (0%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPR 91
           +  +GF+ TS D +V WA+TGS+  MTFGLACCAVEMM A+  RYDL RFG    RASPR
Sbjct: 5   VMKEGFVTTSYDAVVNWAKTGSIWPMTFGLACCAVEMMHAASARYDLARFGAEVFRASPR 64

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
           QSD+MIVAGTL NKMA A+R+VYDQM EPR+V+SMGSCANGGGYYHYSYSVVRGCDR+VP
Sbjct: 65  QSDLMIVAGTLCNKMAPAMRKVYDQMSEPRWVLSMGSCANGGGYYHYSYSVVRGCDRVVP 124

Query: 152 VDIYVPGCPPTAEALI 167
           VD+YVPGCPPTAEALI
Sbjct: 125 VDVYVPGCPPTAEALI 140


>gi|296112931|ref|YP_003626869.1| NADH-quinone oxidoreductase subunit B [Moraxella catarrhalis RH4]
 gi|295920625|gb|ADG60976.1| NADH-quinone oxidoreductase subunit B [Moraxella catarrhalis RH4]
 gi|326561154|gb|EGE11519.1| NADH dehydrogenase subunit B [Moraxella catarrhalis 7169]
          Length = 223

 Score =  205 bits (522), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 82/184 (44%), Positives = 105/184 (57%), Gaps = 11/184 (5%)

Query: 3   LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQL----VTWARTGSLMWM 58
           LT  NQ      +    ++       I+     K   +  +  L      W R  SL   
Sbjct: 5   LTKPNQ-----HTKQYPQQSREIIDDITQAEVDKNVFLGRLSDLTHNLANWGRKNSLWPF 59

Query: 59  TFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQM 117
            FG +CC VE        +DL RFG    RASPRQ+DVMIVAGT   KMA  + R+Y+QM
Sbjct: 60  NFGTSCCYVEYATTLTGVHDLSRFGAEVIRASPRQADVMIVAGTCFVKMAPVILRLYEQM 119

Query: 118 PEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
            EP++VISMG+CAN GG Y   YSVV+G D+I+PVD+YVPGCPP  EALI  I+LLQ+ I
Sbjct: 120 LEPKWVISMGACANSGGMY-DIYSVVQGVDKILPVDVYVPGCPPRPEALIQAIMLLQESI 178

Query: 178 RRVG 181
           ++  
Sbjct: 179 QKER 182


>gi|326382762|ref|ZP_08204452.1| NADH dehydrogenase subunit B [Gordonia neofelifaecis NRRL B-59395]
 gi|326198352|gb|EGD55536.1| NADH dehydrogenase subunit B [Gordonia neofelifaecis NRRL B-59395]
          Length = 184

 Score =  205 bits (522), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 78/151 (51%), Positives = 109/151 (72%), Gaps = 2/151 (1%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89
            E    GF++++V+ L  + R GSL   TFGLACCA+EMM  +  RYDL RFG    RAS
Sbjct: 4   EEQLPGGFVLSTVESLAGYFRKGSLWPATFGLACCAIEMMATTAGRYDLARFGMEAFRAS 63

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQ+D+MIVAG ++ KMA  LR++YDQM EP++V++MG CA+ GG ++  Y++V+G D +
Sbjct: 64  PRQADLMIVAGRVSQKMAPVLRQIYDQMAEPKWVLAMGVCASSGGMFNN-YAIVQGVDHV 122

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           VPVDIY+PGCPP  E L+  IL L  +I+++
Sbjct: 123 VPVDIYLPGCPPRPEMLLNAILELHDQIQQM 153


>gi|320102221|ref|YP_004177812.1| NADH-quinone oxidoreductase subunit B [Isosphaera pallida ATCC
           43644]
 gi|319749503|gb|ADV61263.1| NADH-quinone oxidoreductase, B subunit [Isosphaera pallida ATCC
           43644]
          Length = 247

 Score =  205 bits (522), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 72/174 (41%), Positives = 107/174 (61%), Gaps = 2/174 (1%)

Query: 11  ISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMM 70
            +  +  +  +     +    E   +G ++TS+D +V W R  S   M F  ACC +E+M
Sbjct: 23  TASPTVLTPTRALGQITSGPVEELPEGVILTSLDSVVNWCRKYSFWPMPFATACCGIELM 82

Query: 71  QASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSC 129
                R+D+ RFG    R SPRQ D+MIVAG +  KM   L+R++ QMPEP++ ISMG+C
Sbjct: 83  SVGASRFDIARFGAEVMRFSPRQCDLMIVAGRVVMKMMPVLQRIWLQMPEPKWCISMGAC 142

Query: 130 ANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           A+ GG +  +Y+VV+G DR +PVD+Y+PGCPP  E ++  IL LQ K++R G +
Sbjct: 143 ASTGGIF-DTYAVVQGIDRFIPVDVYIPGCPPRPEQILRAILDLQDKVQRGGKL 195


>gi|293609138|ref|ZP_06691441.1| NADH-quinone oxidoreductase [Acinetobacter sp. SH024]
 gi|292829711|gb|EFF88073.1| NADH-quinone oxidoreductase [Acinetobacter sp. SH024]
 gi|325121082|gb|ADY80605.1| NADH dehydrogenase I chain B [Acinetobacter calcoaceticus PHEA-2]
          Length = 225

 Score =  205 bits (522), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 81/181 (44%), Positives = 109/181 (60%), Gaps = 11/181 (6%)

Query: 3   LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQL----VTWARTGSLMWM 58
           LT  N           L++       +  E+ +K   +T ++ +    V W R  SL   
Sbjct: 5   LTRANP----DADQYPLQERQIVTDPLEEEV-NKNVFMTRLEDVLHTAVNWGRKNSLWPF 59

Query: 59  TFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQM 117
            FG +CC VE        +DL RFG    RASPRQ+D+MIVAGT   KMA  ++R+Y+QM
Sbjct: 60  NFGTSCCYVEYATTLTGVHDLSRFGAEVIRASPRQADLMIVAGTCFVKMAPVIQRLYEQM 119

Query: 118 PEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
            EP++VISMG+CAN GG Y   YSVV+G D+I+PVD+YVPGCPP  EALI  ++LLQ +I
Sbjct: 120 LEPKWVISMGACANSGGMY-DIYSVVQGVDKIIPVDVYVPGCPPRPEALIQALMLLQDQI 178

Query: 178 R 178
           +
Sbjct: 179 Q 179


>gi|212712277|ref|ZP_03320405.1| hypothetical protein PROVALCAL_03363 [Providencia alcalifaciens DSM
           30120]
 gi|212685023|gb|EEB44551.1| hypothetical protein PROVALCAL_03363 [Providencia alcalifaciens DSM
           30120]
          Length = 224

 Score =  205 bits (522), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 78/181 (43%), Positives = 111/181 (61%), Gaps = 3/181 (1%)

Query: 3   LTTVNQKIISGQSSCSLEKVDAD-FSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFG 61
           LT ++    + +     +++  D   +      + G L  ++  +V W R  SL    FG
Sbjct: 5   LTRIDPNGENDRYPLQTQEIVTDPLEQQVENSVYMGKLSHALHDVVNWGRKNSLWPYNFG 64

Query: 62  LACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           L+CC VEM+ +    +D+ RFG    RASPRQ+D M+VAGT   KMA  ++R+YDQM EP
Sbjct: 65  LSCCYVEMVTSFTAVHDVARFGAEVLRASPRQADFMVVAGTCFTKMAPVIQRLYDQMLEP 124

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           ++VISMGSCAN GG Y   YSVV+G D+ +PVD+Y+PGCPP  EA +  +LLLQ+ I + 
Sbjct: 125 KWVISMGSCANSGGMY-DIYSVVQGVDKFIPVDVYIPGCPPRPEAYMQALLLLQESIGKE 183

Query: 181 G 181
            
Sbjct: 184 R 184


>gi|308746024|ref|YP_003934562.1| NADH-plastoquinone oxidoreductase subunit K [Cheilanthes
           lindheimeri]
 gi|302375457|gb|ADL29831.1| NADH-plastoquinone oxidoreductase subunit K [Cheilanthes
           lindheimeri]
          Length = 250

 Score =  205 bits (522), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 65/150 (43%), Positives = 97/150 (64%), Gaps = 1/150 (0%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP 90
            +       + S+      +R  SL  + +G +CC +E       R+D +R+G  PR+SP
Sbjct: 34  QQSVSDSIFLASISDFSNRSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSP 93

Query: 91  RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGCDRI 149
           RQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D++
Sbjct: 94  RQADLIVTAGTITMKMAPSLIRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKL 153

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           +PVDI++PGCPP  EA+   +  L+KKI R
Sbjct: 154 IPVDIHLPGCPPKPEAITDAVTKLRKKIAR 183


>gi|319789707|ref|YP_004151340.1| NADH-quinone oxidoreductase, B subunit [Thermovibrio ammonificans
           HB-1]
 gi|317114209|gb|ADU96699.1| NADH-quinone oxidoreductase, B subunit [Thermovibrio ammonificans
           HB-1]
          Length = 157

 Score =  205 bits (522), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 67/150 (44%), Positives = 101/150 (67%), Gaps = 1/150 (0%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
             +G  +T +  L+ W R G+L  + F  ACC +EMM A+  RYD +RFG   R +PRQ 
Sbjct: 3   LREGVFLTKLQDLINWGRKGALWPLAFATACCGIEMMAAAASRYDFDRFGVIFRNTPRQC 62

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD 153
           D++I+ GT++ KMA  ++R++DQMP+P++ I++GSCA  G  +  +YS +RG D IVPVD
Sbjct: 63  DLLIMCGTISRKMAPIIKRLWDQMPDPKWAIAIGSCAISGNIF-QTYSTLRGLDCIVPVD 121

Query: 154 IYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           +YVPGC P  EA    +++LQ+KI+R   +
Sbjct: 122 VYVPGCAPKPEAFYEALIMLQEKIKRDKPI 151


>gi|108798549|ref|YP_638746.1| NADH dehydrogenase subunit B [Mycobacterium sp. MCS]
 gi|126434147|ref|YP_001069838.1| NADH dehydrogenase subunit B [Mycobacterium sp. JLS]
 gi|122977218|sp|Q1BBP4|NUOB_MYCSS RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|238065180|sp|A3PWS0|NUOB_MYCSJ RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|108768968|gb|ABG07690.1| NADH dehydrogenase subunit B [Mycobacterium sp. MCS]
 gi|126233947|gb|ABN97347.1| NADH dehydrogenase subunit B [Mycobacterium sp. JLS]
          Length = 184

 Score =  205 bits (522), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 74/151 (49%), Positives = 111/151 (73%), Gaps = 2/151 (1%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89
            E    G L+++V+++  + R GSL   TFGLACCA+EMM  + PR+D+ RFG     A+
Sbjct: 4   EERLPGGILLSTVEKVAGYVRAGSLWPATFGLACCAIEMMSTAGPRFDISRFGMERFSAT 63

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQ+D+MIVAG ++ KMA  LR++YDQM EP++V++MG CA+ GG ++  Y++V+G D +
Sbjct: 64  PRQADLMIVAGRVSQKMAPVLRQIYDQMAEPKWVLAMGVCASSGGMFNN-YAIVQGVDHV 122

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           VPVDIY+PGCPP  E L++ I+ L +KI+++
Sbjct: 123 VPVDIYLPGCPPRPEMLLHAIIKLHEKIQQM 153


>gi|297159540|gb|ADI09252.1| NADH dehydrogenase subunit NuoB2 [Streptomyces bingchenggensis
           BCW-1]
          Length = 214

 Score =  205 bits (522), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 79/171 (46%), Positives = 109/171 (63%), Gaps = 1/171 (0%)

Query: 11  ISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMM 70
           ++   + +      D        T        +  ++ W R  SL    FGLACCA+E +
Sbjct: 3   VTPNPAPTPASTPVDLPEPRRLGTLARLAPEPMKVVLNWGRRYSLWVFNFGLACCAIEFI 62

Query: 71  QASMPRYDLERFGFAPR-ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSC 129
            ASM R+D  R G  P    PRQ+D+M+V+GT+T+KMA A++R+Y+QMPEP+YVIS G+C
Sbjct: 63  AASMARHDFIRLGVIPFAPGPRQADLMVVSGTVTDKMAPAVKRLYEQMPEPKYVISFGAC 122

Query: 130 ANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           +N GG Y  SY+V +G D+I+PVD+YVPGCPP  EAL+ GIL LQ+KI R 
Sbjct: 123 SNCGGPYWDSYAVTKGVDQIIPVDVYVPGCPPRPEALLQGILKLQEKIARE 173


>gi|48478473|ref|YP_024179.1| NADH dehydrogenase subunit B [Picrophilus torridus DSM 9790]
 gi|48431121|gb|AAT43986.1| NADH-quinone oxidoreductase chain B [Picrophilus torridus DSM 9790]
          Length = 154

 Score =  205 bits (522), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 81/145 (55%), Positives = 105/145 (72%), Gaps = 1/145 (0%)

Query: 37  GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APRASPRQSDV 95
           G+ +T+V++ + WAR+ SL  +T GLACCA+EMM       D+ RFG    R SPRQ+D+
Sbjct: 7   GYQLTTVEKALEWARSNSLWPLTMGLACCAIEMMATQGSNLDIARFGSEIFRNSPRQADL 66

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
           MIVAGT T +MA  +RR+Y++MP P+YVI+MG C   GG Y   YSVV G DR++PVD+Y
Sbjct: 67  MIVAGTTTKRMAPRVRRIYEEMPYPKYVIAMGVCVIQGGPYVDGYSVVLGVDRVIPVDVY 126

Query: 156 VPGCPPTAEALIYGILLLQKKIRRV 180
           VPGCPP+ +AL  GILLLQKKIR  
Sbjct: 127 VPGCPPSPQALTNGILLLQKKIRNE 151


>gi|325277477|ref|ZP_08143082.1| NADH dehydrogenase subunit B [Pseudomonas sp. TJI-51]
 gi|324097393|gb|EGB95634.1| NADH dehydrogenase subunit B [Pseudomonas sp. TJI-51]
          Length = 225

 Score =  205 bits (522), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 75/175 (42%), Positives = 107/175 (61%), Gaps = 6/175 (3%)

Query: 12  SGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQL----VTWARTGSLMWMTFGLACCAV 67
           +      + + +    ++  +  HK   +  ++ +    V W R  SL    FGL+CC V
Sbjct: 12  APNEQYPVGERETVTDQLLEDQVHKNIFMGKLEDVLRGAVNWGRKNSLWPYNFGLSCCYV 71

Query: 68  EMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISM 126
           EM  A    +D+ RFG    RASPRQ+D M++AGT   KMA  ++R+Y+QM EP++VISM
Sbjct: 72  EMTTAFTAPHDIARFGAEVIRASPRQADFMVIAGTCFVKMAPIIQRLYEQMLEPKWVISM 131

Query: 127 GSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
           GSCAN GG Y   YSVV+G D+ +PVD+YVPGCPP  EA + G++LLQ+ I +  
Sbjct: 132 GSCANSGGMY-DIYSVVQGVDKFLPVDVYVPGCPPRPEAFLQGLMLLQESIGQER 185


>gi|256785904|ref|ZP_05524335.1| NADH dehydrogenase subunit NuoB2 [Streptomyces lividans TK24]
          Length = 232

 Score =  205 bits (522), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 78/136 (57%), Positives = 102/136 (75%), Gaps = 1/136 (0%)

Query: 46  LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR-ASPRQSDVMIVAGTLTN 104
           ++ W R  SL    FGLACCA+E + ASM R+D  R G  P    PRQ+D+M+V+GT+T+
Sbjct: 36  VLNWGRRYSLWVFNFGLACCAIEFIAASMARHDFIRLGVIPFAPGPRQADLMVVSGTVTD 95

Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164
           KMA A++R+Y+QMPEP+YVIS G+C+N GG Y  SYSV +G D+I+PVD+YVPGCPP  E
Sbjct: 96  KMAPAVKRLYEQMPEPKYVISFGACSNCGGPYWDSYSVTKGVDQIIPVDVYVPGCPPRPE 155

Query: 165 ALIYGILLLQKKIRRV 180
           AL+ GIL LQ+KI R 
Sbjct: 156 ALLQGILKLQEKIARE 171


>gi|329944203|ref|ZP_08292462.1| NADH-quinone oxidoreductase subunit 6 [Actinomyces sp. oral taxon
           170 str. F0386]
 gi|328530933|gb|EGF57789.1| NADH-quinone oxidoreductase subunit 6 [Actinomyces sp. oral taxon
           170 str. F0386]
          Length = 204

 Score =  205 bits (522), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 81/160 (50%), Positives = 118/160 (73%), Gaps = 2/160 (1%)

Query: 21  KVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLE 80
           K +  ++  ++E+   GFL+T+V++L   A+  S+  +T GLACCA+EMM A  PR+D+ 
Sbjct: 14  KRNDPYAAAAAEVDSPGFLLTTVERLAGLAQARSMWPVTMGLACCAIEMMAAGTPRFDMA 73

Query: 81  RFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS 139
           RFG+   RASPR +DVMIV+G +++KMA  +R VYD MPEP++VISMG+CA+ GG ++  
Sbjct: 74  RFGWEVFRASPRHADVMIVSGRVSHKMAPIVRNVYDSMPEPKWVISMGACASSGGIFNN- 132

Query: 140 YSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           Y+VV+GCD IVPVDIY+PGCPP  E L+  +L L ++I +
Sbjct: 133 YAVVQGCDHIVPVDIYLPGCPPRPEMLLNAMLELTRQIEK 172


>gi|262376776|ref|ZP_06070004.1| trifunctional NADH dehydrogenase I subunit B/C/D [Acinetobacter
           lwoffii SH145]
 gi|262308486|gb|EEY89621.1| trifunctional NADH dehydrogenase I subunit B/C/D [Acinetobacter
           lwoffii SH145]
          Length = 226

 Score =  205 bits (522), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 79/181 (43%), Positives = 107/181 (59%), Gaps = 10/181 (5%)

Query: 3   LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLV----TWARTGSLMWM 58
           LT  N           +   D     +  E  +K   +T ++ +V     W R  S+   
Sbjct: 5   LTRANPNADQYPLQERIVVEDP----LLEEEVNKNVFMTRLEDVVHTAVNWGRKNSVWPF 60

Query: 59  TFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQM 117
            FG +CC VE        +DL RFG    RASPRQ+D+MIVAGT   KMA  ++R+Y+QM
Sbjct: 61  NFGTSCCYVEYATTLTGVHDLSRFGAEVIRASPRQADLMIVAGTCFVKMAPVIQRLYEQM 120

Query: 118 PEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
            EP++VISMG+CAN GG Y   YSVV+G D+I+PVD+Y+PGCPP  EALI  ++LLQ +I
Sbjct: 121 LEPKWVISMGACANSGGMY-DIYSVVQGVDKIIPVDVYIPGCPPRPEALIQALMLLQDQI 179

Query: 178 R 178
           +
Sbjct: 180 Q 180


>gi|307328659|ref|ZP_07607832.1| NADH-quinone oxidoreductase, B subunit [Streptomyces violaceusniger
           Tu 4113]
 gi|306885771|gb|EFN16784.1| NADH-quinone oxidoreductase, B subunit [Streptomyces violaceusniger
           Tu 4113]
          Length = 231

 Score =  205 bits (521), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 77/136 (56%), Positives = 102/136 (75%), Gaps = 1/136 (0%)

Query: 46  LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR-ASPRQSDVMIVAGTLTN 104
           ++ W R  SL    FGLACCA+E + ASM R+D  R G  P    PRQ+D+M+V+GT+T+
Sbjct: 56  VLNWGRRYSLWVFNFGLACCAIEFIAASMARHDFIRLGVIPFAPGPRQADLMVVSGTVTD 115

Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164
           KMA A++R+Y+QMPEP+YVIS G+C+N GG Y  SY+V +G D+I+PVD+YVPGCPP  E
Sbjct: 116 KMAPAVKRLYEQMPEPKYVISFGACSNCGGPYWDSYAVTKGVDQIIPVDVYVPGCPPRPE 175

Query: 165 ALIYGILLLQKKIRRV 180
           AL+ GIL LQ+KI R 
Sbjct: 176 ALLQGILKLQEKIARE 191


>gi|311744393|ref|ZP_07718195.1| NADH-quinone oxidoreductase subunit B [Aeromicrobium marinum DSM
           15272]
 gi|311312359|gb|EFQ82274.1| NADH-quinone oxidoreductase subunit B [Aeromicrobium marinum DSM
           15272]
          Length = 184

 Score =  205 bits (521), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 78/149 (52%), Positives = 103/149 (69%), Gaps = 2/149 (1%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89
            E    G L+++V+ L  + R  S    TFGLACCA+EMM    PRYD  RFG    R S
Sbjct: 4   EEKLPSGVLLSTVEDLAGYFRKASFWPATFGLACCAIEMMTFGAPRYDSSRFGMEVFRPS 63

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQ+D+MIVAG ++NKMA  LR++YDQM EP+YV++MG CA+ GG ++  Y++V+G D +
Sbjct: 64  PRQADLMIVAGRVSNKMAPVLRQIYDQMAEPKYVLAMGVCASSGGMFNN-YAIVQGVDHV 122

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           VPVD+Y+PGCPP  E LI  IL L  KI+
Sbjct: 123 VPVDMYLPGCPPRPEMLIDAILKLHDKIQ 151


>gi|326565205|gb|EGE15391.1| NADH dehydrogenase subunit B [Moraxella catarrhalis 103P14B1]
 gi|326574002|gb|EGE23951.1| NADH dehydrogenase subunit B [Moraxella catarrhalis CO72]
 gi|326577029|gb|EGE26924.1| NADH dehydrogenase subunit B [Moraxella catarrhalis 101P30B1]
          Length = 222

 Score =  205 bits (521), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 82/184 (44%), Positives = 105/184 (57%), Gaps = 11/184 (5%)

Query: 3   LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQL----VTWARTGSLMWM 58
           LT  NQ      +    ++       I+     K   +  +  L      W R  SL   
Sbjct: 5   LTKPNQ-----HTKQYPQQSREIIDDITQAEVDKNVFLGRLSDLTHNLANWGRKNSLWPF 59

Query: 59  TFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQM 117
            FG +CC VE        +DL RFG    RASPRQ+DVMIVAGT   KMA  + R+Y+QM
Sbjct: 60  NFGTSCCYVEYATTLTGVHDLSRFGAEVIRASPRQADVMIVAGTCFVKMAPVILRLYEQM 119

Query: 118 PEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
            EP++VISMG+CAN GG Y   YSVV+G D+I+PVD+YVPGCPP  EALI  I+LLQ+ I
Sbjct: 120 LEPKWVISMGACANSGGMY-DIYSVVQGVDKILPVDVYVPGCPPRPEALIQAIMLLQESI 178

Query: 178 RRVG 181
           ++  
Sbjct: 179 QKER 182


>gi|329765844|ref|ZP_08257410.1| NADH-quinone oxidoreductase, B subunit [Candidatus Nitrosoarchaeum
           limnia SFB1]
 gi|329137687|gb|EGG41957.1| NADH-quinone oxidoreductase, B subunit [Candidatus Nitrosoarchaeum
           limnia SFB1]
          Length = 174

 Score =  205 bits (521), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 78/152 (51%), Positives = 101/152 (66%), Gaps = 5/152 (3%)

Query: 38  FLVTSVDQ----LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQ 92
            L  ++D+     + W R  SL  +    ACC+VE   AS PRYD+ERFG      S RQ
Sbjct: 21  ILEKAIDKPLGYAINWGRIWSLWPVHIETACCSVEFGAASSPRYDVERFGIIEAFGSLRQ 80

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
            D+++V GT+T KMA  LR VYDQMPEP+YVI+MG+CA  GG Y  SY+V+ G D ++PV
Sbjct: 81  CDLIVVQGTITRKMAPRLRLVYDQMPEPKYVIAMGACAITGGLYFDSYNVLPGIDGVLPV 140

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           D+YVPGCPP  E LI G +LLQ+KI+R+   K
Sbjct: 141 DVYVPGCPPRPETLIQGCMLLQEKIKRMKARK 172


>gi|153004155|ref|YP_001378480.1| NADH dehydrogenase subunit B [Anaeromyxobacter sp. Fw109-5]
 gi|218527973|sp|A7H9V0|NUOB1_ANADF RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName:
           Full=NADH dehydrogenase I subunit B 1; AltName:
           Full=NDH-1 subunit B 1
 gi|152027728|gb|ABS25496.1| NADH-quinone oxidoreductase, B subunit [Anaeromyxobacter sp.
           Fw109-5]
          Length = 172

 Score =  205 bits (521), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 82/141 (58%), Positives = 105/141 (74%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           F  + +D+L+  AR  SL ++ FGLACC +E+MQ   PR D+ RFG  PRASPRQ+D MI
Sbjct: 16  FHTSQLDKLINMARENSLWYLLFGLACCGIELMQFGGPRADVMRFGAIPRASPRQADFMI 75

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           VAGTLT KMA   + +YDQMPEP+YVISMGSC+N GG +   YSV +G D+++PVD+YVP
Sbjct: 76  VAGTLTYKMAERAKLLYDQMPEPKYVISMGSCSNCGGLFQLGYSVCKGVDKVIPVDVYVP 135

Query: 158 GCPPTAEALIYGILLLQKKIR 178
           GCPP  EAL  G++ LQ+ IR
Sbjct: 136 GCPPRPEALTEGLIRLQELIR 156


>gi|312139310|ref|YP_004006646.1| NADH dehydrogenase (quinone) chain b nuob [Rhodococcus equi 103S]
 gi|325673384|ref|ZP_08153075.1| NADH-quinone oxidoreductase subunit B [Rhodococcus equi ATCC 33707]
 gi|311888649|emb|CBH47961.1| NADH dehydrogenase (quinone) chain B NuoB [Rhodococcus equi 103S]
 gi|325555405|gb|EGD25076.1| NADH-quinone oxidoreductase subunit B [Rhodococcus equi ATCC 33707]
          Length = 190

 Score =  205 bits (521), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 81/149 (54%), Positives = 108/149 (72%), Gaps = 2/149 (1%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89
            E    GFL+++V+ +  +AR GSL   TFGLACCA+EMM  +  RYDL RFG    RAS
Sbjct: 4   EEKVPGGFLLSTVETVAGYARKGSLWPATFGLACCAIEMMATTSGRYDLARFGMEAFRAS 63

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQ+D+MIVAG ++ KMA  LR+VYDQM EP++V++MG CA+ GG ++  Y++V+G D +
Sbjct: 64  PRQADLMIVAGRVSQKMAPVLRQVYDQMVEPKWVLAMGVCASSGGMFNN-YAIVQGVDHV 122

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           VPVDIY+PGCPP  E L+  IL L  KI+
Sbjct: 123 VPVDIYLPGCPPRPEMLLDAILALHAKIQ 151


>gi|170727205|ref|YP_001761231.1| NADH-quinone oxidoreductase subunit B [Shewanella woodyi ATCC
           51908]
 gi|238065215|sp|B1KJU9|NUOB_SHEWM RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|169812552|gb|ACA87136.1| NADH-quinone oxidoreductase, B subunit [Shewanella woodyi ATCC
           51908]
          Length = 213

 Score =  205 bits (521), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 76/152 (50%), Positives = 107/152 (70%), Gaps = 2/152 (1%)

Query: 28  RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP- 86
           +   E+  K  LVT ++ LV W R+ SL    FGL+CC VEM  +   R+D+ RFG    
Sbjct: 16  QTMQEVVEKNLLVTRLEDLVAWGRSNSLWPFNFGLSCCYVEMATSFTSRHDIARFGSEVI 75

Query: 87  RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGC 146
           RA+PR++D+++++GT+  KMA  ++ +YDQM EP++VI MGSCAN GG Y   YSVV+G 
Sbjct: 76  RATPREADLIVISGTVFLKMAPVIKHLYDQMLEPKWVICMGSCANSGGMY-DVYSVVQGA 134

Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           DR +P+D+YVPGCPP  EAL+YG+ LLQ+ I+
Sbjct: 135 DRFLPIDLYVPGCPPRPEALMYGLTLLQEAIK 166


>gi|167042391|gb|ABZ07118.1| putative NADH ubiquinone oxidoreductase, 20 Kd subunit [uncultured
           marine crenarchaeote HF4000_ANIW97P9]
          Length = 185

 Score =  205 bits (521), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 80/149 (53%), Positives = 100/149 (67%), Gaps = 5/149 (3%)

Query: 38  FLVTSVDQ----LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQ 92
            L  +VD+     + W R  SL  +    ACC+VE   AS PRYD+ERFG      S RQ
Sbjct: 35  ILYKAVDKPLGMAINWGRLWSLWPVHIETACCSVEFGAASGPRYDVERFGIIEAFGSLRQ 94

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
            D+++V GT+T KMA  LR VYDQMPEP+YVI+MG+CA  GG Y  SY+V+ G D I+PV
Sbjct: 95  CDLVVVQGTITRKMAPRLRLVYDQMPEPKYVIAMGACAITGGLYFDSYNVLPGIDGILPV 154

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVG 181
           D+YVPGCPP  E LI G LLLQ+KI+R+ 
Sbjct: 155 DVYVPGCPPRPETLIQGCLLLQEKIKRMK 183


>gi|291303411|ref|YP_003514689.1| NADH-quinone oxidoreductase subunit B [Stackebrandtia nassauensis
           DSM 44728]
 gi|290572631|gb|ADD45596.1| NADH-quinone oxidoreductase, B subunit [Stackebrandtia nassauensis
           DSM 44728]
          Length = 188

 Score =  205 bits (521), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 78/142 (54%), Positives = 106/142 (74%), Gaps = 1/142 (0%)

Query: 37  GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS-PRQSDV 95
           G L   +  ++ W R  SL    FGLACCA+E + +SM R+D  R G  P A  PRQ+D+
Sbjct: 15  GVLGEPIRFVLNWGRRYSLWVFNFGLACCAIEFIASSMGRHDFMRLGVIPFAHGPRQADL 74

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
           M+V+GT+T+KMA A++R+YDQMPEP+YVIS G+C+N GG Y  SYSV +G D+++PVD+Y
Sbjct: 75  MVVSGTVTDKMAPAIKRLYDQMPEPKYVISFGACSNSGGPYWDSYSVTKGVDQLIPVDVY 134

Query: 156 VPGCPPTAEALIYGILLLQKKI 177
           VPGCPP  EAL++GI+ LQ+KI
Sbjct: 135 VPGCPPRPEALLHGIMRLQEKI 156


>gi|320532540|ref|ZP_08033350.1| NADH dehydrogenase subunit B [Actinomyces sp. oral taxon 171 str.
           F0337]
 gi|320135245|gb|EFW27383.1| NADH dehydrogenase subunit B [Actinomyces sp. oral taxon 171 str.
           F0337]
          Length = 204

 Score =  205 bits (521), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 81/160 (50%), Positives = 117/160 (73%), Gaps = 2/160 (1%)

Query: 21  KVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLE 80
           K +   +  ++E+   GFL+T+V++L   A+  S+  +T GLACCA+EMM A  PR+D+ 
Sbjct: 14  KRNDPHAAAAAEVDSPGFLLTTVEKLAGLAQARSMWPVTMGLACCAIEMMAAGTPRFDMA 73

Query: 81  RFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS 139
           RFG+   RASPR +DVMIV+G +++KMA  +R VYD MPEP++VISMG+CA+ GG ++  
Sbjct: 74  RFGWEVFRASPRHADVMIVSGRVSHKMAPIVRNVYDSMPEPKWVISMGACASSGGIFNN- 132

Query: 140 YSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           Y+VV+GCD IVPVDIY+PGCPP  E L+  +L L ++I +
Sbjct: 133 YAVVQGCDHIVPVDIYLPGCPPRPEMLLNAMLELTRQIEK 172


>gi|294630833|ref|ZP_06709393.1| NADH dehydrogenase I, 20 kDa subunit [Streptomyces sp. e14]
 gi|292834166|gb|EFF92515.1| NADH dehydrogenase I, 20 kDa subunit [Streptomyces sp. e14]
          Length = 236

 Score =  205 bits (521), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 82/170 (48%), Positives = 111/170 (65%), Gaps = 10/170 (5%)

Query: 12  SGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQ 71
           +G  +    K     SR++ E          +  ++ W R  SL    FGLACCA+E + 
Sbjct: 26  AGPVALPEPKRLGVLSRLAPE---------PMKVVLNWGRRYSLWVFNFGLACCAIEFIA 76

Query: 72  ASMPRYDLERFGFAPR-ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCA 130
           ASM R+D  R G  P    PRQ+D+M+V+GT+T+KMA A++R+Y+QMPEP+YVIS G+C+
Sbjct: 77  ASMARHDFIRLGVIPFAPGPRQADLMVVSGTVTDKMAPAVKRLYEQMPEPKYVISFGACS 136

Query: 131 NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           N GG Y  SYSV +G D+I+PVD+YVPGCPP  EAL+ GIL LQ+KI   
Sbjct: 137 NCGGPYWDSYSVTKGVDQIIPVDVYVPGCPPRPEALLQGILKLQEKIAHE 186


>gi|302543406|ref|ZP_07295748.1| NADH dehydrogenase I, 20 kDa subunit [Streptomyces hygroscopicus
           ATCC 53653]
 gi|302461024|gb|EFL24117.1| NADH dehydrogenase I, 20 kDa subunit [Streptomyces himastatinicus
           ATCC 53653]
          Length = 241

 Score =  205 bits (521), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 77/136 (56%), Positives = 102/136 (75%), Gaps = 1/136 (0%)

Query: 46  LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR-ASPRQSDVMIVAGTLTN 104
           ++ W R  SL    FGLACCA+E + ASM R+D  R G  P    PRQ+D+M+V+GT+T+
Sbjct: 73  VLNWGRRYSLWVFNFGLACCAIEFIAASMARHDFIRLGVIPFAPGPRQADLMVVSGTVTD 132

Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164
           KMA A++R+Y+QMPEP+YVIS G+C+N GG Y  SY+V +G D+I+PVD+YVPGCPP  E
Sbjct: 133 KMAPAVKRLYEQMPEPKYVISFGACSNCGGPYWDSYAVTKGVDQIIPVDVYVPGCPPRPE 192

Query: 165 ALIYGILLLQKKIRRV 180
           AL+ GIL LQ+KI R 
Sbjct: 193 ALLQGILKLQEKIARE 208


>gi|313126885|ref|YP_004037155.1| NADH dehydrogenase subunit b [Halogeometricum borinquense DSM
           11551]
 gi|312293250|gb|ADQ67710.1| NADH dehydrogenase subunit B [Halogeometricum borinquense DSM
           11551]
          Length = 236

 Score =  205 bits (521), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 77/182 (42%), Positives = 113/182 (62%), Gaps = 11/182 (6%)

Query: 7   NQKIISGQSSCSLEKVDADF----------SRISSEITHKGFLVTSVDQLVTWARTGSLM 56
           NQ  ++  +    E  DA            S++        F++T  D  + W R  S+ 
Sbjct: 6   NQPFVTDDTQVQTETRDARMTGSGADNRFNSKLREAFGSSPFILTKFDNFMNWVRGSSMF 65

Query: 57  WMTFGLACCAVEMMQASMPRYDLERFGF-APRASPRQSDVMIVAGTLTNKMASALRRVYD 115
            + FG+ACC++EMM     ++DL+RF    PRASPRQ+DV+IV GT+ +K A  ++RVYD
Sbjct: 66  MLQFGIACCSIEMMHTYSVKHDLDRFAAGVPRASPRQADVIIVPGTIVSKFAPRMKRVYD 125

Query: 116 QMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175
           QMPEP++V+ MGSC   GG +   Y+V++G + ++PVDI+VPGCPP  EALIYG+  LQ+
Sbjct: 126 QMPEPKFVVGMGSCTVSGGPFQEGYNVIKGAEEVIPVDIHVPGCPPRPEALIYGVAKLQQ 185

Query: 176 KI 177
           +I
Sbjct: 186 RI 187


>gi|183599635|ref|ZP_02961128.1| hypothetical protein PROSTU_03122 [Providencia stuartii ATCC 25827]
 gi|188021887|gb|EDU59927.1| hypothetical protein PROSTU_03122 [Providencia stuartii ATCC 25827]
          Length = 224

 Score =  205 bits (521), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 78/181 (43%), Positives = 111/181 (61%), Gaps = 3/181 (1%)

Query: 3   LTTVNQKIISGQSSCSLEKVDAD-FSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFG 61
           LT ++    + +     +++  D   +      + G L  ++  +V W R  SL    FG
Sbjct: 5   LTRIDPNGENDRYPLQTQEIVTDPLEQQVKNSVYMGKLSHALHDVVNWGRKNSLWPYNFG 64

Query: 62  LACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           L+CC VEM+ +    +D+ RFG    RASPRQ+D M+VAGT   KMA  ++R+YDQM EP
Sbjct: 65  LSCCYVEMVTSFTAVHDVARFGAEVLRASPRQADFMVVAGTCFTKMAPVIQRLYDQMLEP 124

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           ++VISMGSCAN GG Y   YSVV+G D+ +PVD+Y+PGCPP  EA +  +LLLQ+ I + 
Sbjct: 125 KWVISMGSCANSGGMY-DIYSVVQGVDKFIPVDVYIPGCPPRPEAYMQALLLLQESIGKE 183

Query: 181 G 181
            
Sbjct: 184 R 184


>gi|104782522|ref|YP_609020.1| NADH dehydrogenase subunit B [Pseudomonas entomophila L48]
 gi|167034688|ref|YP_001669919.1| NADH dehydrogenase subunit B [Pseudomonas putida GB-1]
 gi|122402719|sp|Q1I7Z9|NUOB_PSEE4 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|238065197|sp|B0KMX9|NUOB_PSEPG RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|95111509|emb|CAK16229.1| NADH dehydrogenase I chain B [Pseudomonas entomophila L48]
 gi|166861176|gb|ABY99583.1| NADH-quinone oxidoreductase, B subunit [Pseudomonas putida GB-1]
          Length = 225

 Score =  205 bits (521), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 75/175 (42%), Positives = 107/175 (61%), Gaps = 6/175 (3%)

Query: 12  SGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQL----VTWARTGSLMWMTFGLACCAV 67
           +      + + +    ++  +  HK   +  ++ +    V W R  SL    FGL+CC V
Sbjct: 12  APNEQYPVGERETVTDQLLEDQVHKNIYMGKLEDVLRGAVNWGRKNSLWPYNFGLSCCYV 71

Query: 68  EMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISM 126
           EM  A    +D+ RFG    RASPRQ+D M++AGT   KMA  ++R+Y+QM EP++VISM
Sbjct: 72  EMTTAFTAPHDIARFGAEVIRASPRQADFMVIAGTCFVKMAPIIQRLYEQMLEPKWVISM 131

Query: 127 GSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
           GSCAN GG Y   YSVV+G D+ +PVD+YVPGCPP  EA + G++LLQ+ I +  
Sbjct: 132 GSCANSGGMY-DIYSVVQGVDKFLPVDVYVPGCPPRPEAFLQGLMLLQESIGQER 185


>gi|322370548|ref|ZP_08045106.1| NADH-quinone oxidoreductase, B subunit [Haladaptatus
           paucihalophilus DX253]
 gi|320549965|gb|EFW91621.1| NADH-quinone oxidoreductase, B subunit [Haladaptatus
           paucihalophilus DX253]
          Length = 220

 Score =  205 bits (521), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 77/160 (48%), Positives = 112/160 (70%), Gaps = 2/160 (1%)

Query: 20  EKVDADF-SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78
           E++   F S++   +    F++T  D  + W R  S+  + FG+ACC++EMM     ++D
Sbjct: 12  EELPGRFDSKLREALGTSPFILTKFDAFMNWVRGSSMFMLQFGIACCSIEMMHTYAVKHD 71

Query: 79  LERFGF-APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137
           L+RFG   PRASPRQ+DV+IV GT+ +K A  ++RVYDQMPEP++V+SMGSC   GG + 
Sbjct: 72  LDRFGAGVPRASPRQADVIIVPGTIVSKFAPRMKRVYDQMPEPKFVVSMGSCTCSGGPFQ 131

Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
             Y+V++G + ++PVDI+VPGCPP  EALIYGI  LQ++I
Sbjct: 132 QGYNVIKGAEEVIPVDIHVPGCPPRPEALIYGIAKLQERI 171


>gi|296103968|ref|YP_003614114.1| NADH dehydrogenase subunit B [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|295058427|gb|ADF63165.1| NADH dehydrogenase subunit B [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|295098074|emb|CBK87164.1| NADH dehydrogenase subunit B [Enterobacter cloacae subsp. cloacae
           NCTC 9394]
          Length = 224

 Score =  204 bits (520), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 75/172 (43%), Positives = 107/172 (62%), Gaps = 5/172 (2%)

Query: 14  QSSCSLEKVDADFSRISSEITHK---GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMM 70
                L+K +     +  E+      G L  ++  +V W R  S+    FGL+CC VEM+
Sbjct: 14  NDRYPLQKQEIVTDPLEQEVNKSVYMGKLEHAMHDMVNWGRKNSIWPYNFGLSCCYVEMV 73

Query: 71  QASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSC 129
            +    +D+ RFG    RASPRQ+D+M+VAGT   KMA  ++R+YDQM EP++VISMG+C
Sbjct: 74  TSFTAVHDVARFGAEVLRASPRQADLMVVAGTCFTKMAPVIQRLYDQMLEPKWVISMGAC 133

Query: 130 ANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
           AN GG Y   YSVV+G D+ +PVD+Y+PGCPP  EA +  ++LLQ+ I +  
Sbjct: 134 ANSGGMY-DIYSVVQGVDKFIPVDVYIPGCPPRPEAYMQALMLLQESIGKER 184


>gi|271962234|ref|YP_003336430.1| NADH dehydrogenase (quinone) [Streptosporangium roseum DSM 43021]
 gi|270505409|gb|ACZ83687.1| NADH dehydrogenase (quinone) [Streptosporangium roseum DSM 43021]
          Length = 173

 Score =  204 bits (520), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 77/133 (57%), Positives = 104/133 (78%), Gaps = 1/133 (0%)

Query: 46  LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS-PRQSDVMIVAGTLTN 104
           ++ W R  SL    FGLACCA+E +  +M R+D  RFG  P A+ PRQ+D+MIV+GT+T+
Sbjct: 23  ILNWGRRYSLWAFNFGLACCAIEFIATTMSRHDFIRFGVIPFANGPRQADLMIVSGTVTD 82

Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164
           KMA A++R+Y+QMPEP+YVIS G+C+N GG Y  SY V +G D+I+PVD+YVPGCPP  E
Sbjct: 83  KMAPAVKRLYEQMPEPKYVISFGACSNSGGPYWDSYCVTKGVDQIIPVDVYVPGCPPRPE 142

Query: 165 ALIYGILLLQKKI 177
           AL++GI+LLQ+KI
Sbjct: 143 ALLHGIMLLQEKI 155


>gi|161527785|ref|YP_001581611.1| NADH-quinone oxidoreductase subunit B [Nitrosopumilus maritimus
           SCM1]
 gi|160339086|gb|ABX12173.1| NADH-quinone oxidoreductase, B subunit [Nitrosopumilus maritimus
           SCM1]
          Length = 174

 Score =  204 bits (520), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 78/152 (51%), Positives = 101/152 (66%), Gaps = 5/152 (3%)

Query: 38  FLVTSVDQ----LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQ 92
            L  ++D+     + W R  SL  +    ACC+VE   AS PRYD+ERFG      S RQ
Sbjct: 21  ILEKAIDKPLGYAINWGRIWSLWPVHIETACCSVEFGAASSPRYDVERFGIIEAFGSLRQ 80

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
            D+++V GT+T KMA  LR VYDQMPEP+YVI+MG+CA  GG Y  SY+V+ G D ++PV
Sbjct: 81  CDLVVVQGTITRKMAPRLRLVYDQMPEPKYVIAMGACAITGGLYFDSYNVLPGIDGVIPV 140

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           D+YVPGCPP  E LI G +LLQ+KI+R+   K
Sbjct: 141 DVYVPGCPPRPETLIQGCILLQEKIKRMKARK 172


>gi|71065152|ref|YP_263879.1| NADH dehydrogenase subunit B [Psychrobacter arcticus 273-4]
 gi|123649364|sp|Q4FU63|NUOB_PSYA2 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|71038137|gb|AAZ18445.1| NADH dehydrogenase I, B subunit [Psychrobacter arcticus 273-4]
          Length = 222

 Score =  204 bits (520), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 83/184 (45%), Positives = 107/184 (58%), Gaps = 11/184 (5%)

Query: 3   LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLV----TWARTGSLMWM 58
           LT  N       +  S    D        +  +K   +  ++ LV     W R  SL   
Sbjct: 5   LTKANPDADVYPAQTSQTVNDP-----MEDEVNKNVFMGRLEDLVHSTANWGRKHSLWPF 59

Query: 59  TFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQM 117
            FG +CC VE        +DL RFG    RASPRQ+DVMIVAGT   KMA  ++R+Y+QM
Sbjct: 60  NFGTSCCYVEYATTLTAVHDLSRFGAEVIRASPRQADVMIVAGTCFVKMAPVIQRLYEQM 119

Query: 118 PEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
            EP++VISMG+CAN GG Y   YSVV+G D+I+PVD+YVPGCPP  EALI G++LLQ+ I
Sbjct: 120 LEPKWVISMGACANSGGMY-DIYSVVQGVDKIIPVDVYVPGCPPRPEALIQGLMLLQESI 178

Query: 178 RRVG 181
            +  
Sbjct: 179 TKER 182


>gi|93005404|ref|YP_579841.1| NADH dehydrogenase subunit B [Psychrobacter cryohalolentis K5]
 gi|122415842|sp|Q1QD96|NUOB_PSYCK RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|92393082|gb|ABE74357.1| NADH-quinone oxidoreductase, B subunit [Psychrobacter
           cryohalolentis K5]
          Length = 222

 Score =  204 bits (520), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 83/184 (45%), Positives = 107/184 (58%), Gaps = 11/184 (5%)

Query: 3   LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLV----TWARTGSLMWM 58
           LT  N       +  S    D        +  +K   +  ++ LV     W R  SL   
Sbjct: 5   LTKANPDADVYPAQTSQTVNDP-----MEDEVNKNVFMGRLEDLVHSTANWGRKHSLWPF 59

Query: 59  TFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQM 117
            FG +CC VE        +DL RFG    RASPRQ+DVMIVAGT   KMA  ++R+Y+QM
Sbjct: 60  NFGTSCCYVEYATTLTAVHDLSRFGAEVIRASPRQADVMIVAGTCFVKMAPVIQRLYEQM 119

Query: 118 PEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
            EP++VISMG+CAN GG Y   YSVV+G D+I+PVD+YVPGCPP  EALI G++LLQ+ I
Sbjct: 120 LEPKWVISMGACANSGGMY-DIYSVVQGVDKIIPVDVYVPGCPPRPEALIQGLMLLQESI 178

Query: 178 RRVG 181
            +  
Sbjct: 179 TKER 182


>gi|320352991|ref|YP_004194330.1| NADH dehydrogenase subunit B [Desulfobulbus propionicus DSM 2032]
 gi|320121493|gb|ADW17039.1| NADH dehydrogenase subunit B [Desulfobulbus propionicus DSM 2032]
          Length = 165

 Score =  204 bits (520), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 78/153 (50%), Positives = 105/153 (68%), Gaps = 4/153 (2%)

Query: 29  ISSEITHKGFL-VTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-P 86
           +  EI     +    +D+L+   R  SL  MTFGLACCA+EMM     RYD+ RFG    
Sbjct: 1   MGEEIVPSSIVQFAQLDKLLNLGRANSLWPMTFGLACCAIEMMCTGGSRYDISRFGAEVF 60

Query: 87  RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY--HYSYSVVR 144
           R SPRQSDVMIVAGT+  K+  A++ +YDQMPEP++VI+MG+CA  GG +    +Y+VV 
Sbjct: 61  RPSPRQSDVMIVAGTINKKLELAVKTLYDQMPEPKWVIAMGNCAISGGPFKVKENYNVVE 120

Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
           G D++ PVD+Y+PGCPP  EAL+ GI+ L++KI
Sbjct: 121 GADKLFPVDVYIPGCPPRPEALLEGIMALEEKI 153


>gi|146307436|ref|YP_001187901.1| NADH dehydrogenase subunit B [Pseudomonas mendocina ymp]
 gi|238065195|sp|A4XV03|NUOB_PSEMY RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|145575637|gb|ABP85169.1| NADH dehydrogenase subunit B [Pseudomonas mendocina ymp]
          Length = 225

 Score =  204 bits (520), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 76/184 (41%), Positives = 112/184 (60%), Gaps = 8/184 (4%)

Query: 3   LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQL----VTWARTGSLMWM 58
           LT V+    +   +  + + +     +  +  HK   +  ++++    + W R  SL   
Sbjct: 5   LTRVDPN--APNEAYPIGQRELVSDPLLEDQVHKNIYMGKLEEVLNGAINWGRKNSLWPY 62

Query: 59  TFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQM 117
            FGL+CC VEM  A    +D+ RFG    RASPRQ+D M++AGT   KMA  ++R+Y+QM
Sbjct: 63  NFGLSCCYVEMTTAFTAPHDVARFGAEVIRASPRQADFMVIAGTCFIKMAPVIQRLYEQM 122

Query: 118 PEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
            EP++VISMGSCAN GG Y   YSVV+G D+ +PVD+Y+PGCPP  EA + G++LLQ+ I
Sbjct: 123 LEPKWVISMGSCANSGGMY-DIYSVVQGVDKFLPVDVYIPGCPPRPEAFLQGLMLLQESI 181

Query: 178 RRVG 181
            +  
Sbjct: 182 GQER 185


>gi|148653495|ref|YP_001280588.1| NADH dehydrogenase subunit B [Psychrobacter sp. PRwf-1]
 gi|238065199|sp|A5WG47|NUOB_PSYWF RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|148572579|gb|ABQ94638.1| NADH-quinone oxidoreductase, B subunit [Psychrobacter sp. PRwf-1]
          Length = 222

 Score =  204 bits (520), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 80/184 (43%), Positives = 107/184 (58%), Gaps = 11/184 (5%)

Query: 3   LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLV----TWARTGSLMWM 58
           LT  N    +  +       +     ++     +   +  ++ +V     W R  SL   
Sbjct: 5   LTRANPDADTYPAQTRQTVNNPIEDEVN-----RNVFMGKLEDMVHASANWGRKNSLWPF 59

Query: 59  TFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQM 117
            FG +CC VE        +DL RFG    RASPRQ+DVMIVAGT   KMA  ++R+Y+QM
Sbjct: 60  NFGTSCCYVEYATTLTAVHDLSRFGAEVIRASPRQADVMIVAGTCFVKMAPVIQRLYEQM 119

Query: 118 PEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
            EP++VISMGSCAN GG Y   YSVV+G D+I+PVD+YVPGCPP  EALI G++LLQ+ I
Sbjct: 120 LEPKWVISMGSCANSGGMY-DIYSVVQGVDKIIPVDVYVPGCPPRPEALIQGLMLLQESI 178

Query: 178 RRVG 181
            +  
Sbjct: 179 TKER 182


>gi|253989001|ref|YP_003040357.1| NADH dehydrogenase subunit B [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253780451|emb|CAQ83613.1| nadh dehydrogenase i chain b (nadh-ubiquinone oxidoreductase chain
           2 (nuo2) [Photorhabdus asymbiotica]
          Length = 224

 Score =  204 bits (520), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 79/181 (43%), Positives = 111/181 (61%), Gaps = 3/181 (1%)

Query: 3   LTTVNQKIISGQSSCSLEKVDAD-FSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFG 61
           LT ++    + +     +++ AD   +      + G L  ++  LV W R  SL    FG
Sbjct: 5   LTRIDPNGENDRYPLQKQEIVADPLEQHVHRSVYMGKLEHALHDLVNWGRKNSLWPYNFG 64

Query: 62  LACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           L+CC VEM  +    +D+ RFG    RASPRQ+D M+VAGT   KMA  ++R+YDQM EP
Sbjct: 65  LSCCYVEMATSFTAVHDVARFGAEVLRASPRQADFMVVAGTCFTKMAPVIQRLYDQMLEP 124

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           ++VISMG+CAN GG Y   YSVV+G D+ +PVD+Y+PGCPP  EA +  +LLLQ+ I + 
Sbjct: 125 KWVISMGACANSGGMY-DIYSVVQGVDKFIPVDVYIPGCPPRPEAYMQALLLLQESIGKE 183

Query: 181 G 181
            
Sbjct: 184 R 184


>gi|170721056|ref|YP_001748744.1| NADH dehydrogenase subunit B [Pseudomonas putida W619]
 gi|238065198|sp|B1J6N3|NUOB_PSEPW RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|169759059|gb|ACA72375.1| NADH-quinone oxidoreductase, B subunit [Pseudomonas putida W619]
          Length = 225

 Score =  204 bits (520), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 75/175 (42%), Positives = 107/175 (61%), Gaps = 6/175 (3%)

Query: 12  SGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQL----VTWARTGSLMWMTFGLACCAV 67
           +      + + +    ++  +  HK   +  ++ +    V W R  SL    FGL+CC V
Sbjct: 12  APNEQYPVGERETVTDQLLEDQVHKNIYMGKLEDVLRGAVNWGRKNSLWPYNFGLSCCYV 71

Query: 68  EMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISM 126
           EM  A    +D+ RFG    RASPRQ+D M++AGT   KMA  ++R+Y+QM EP++VISM
Sbjct: 72  EMTTAFTAPHDIARFGAEVIRASPRQADFMVIAGTCFIKMAPIIQRLYEQMLEPKWVISM 131

Query: 127 GSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
           GSCAN GG Y   YSVV+G D+ +PVD+YVPGCPP  EA + G++LLQ+ I +  
Sbjct: 132 GSCANSGGMY-DIYSVVQGVDKFLPVDVYVPGCPPRPEAFLQGLMLLQESIGQER 185


>gi|221136116|ref|XP_002171279.1| PREDICTED: similar to NADH dehydrogenase (ubiquinone) Fe-S protein
           7 [Hydra magnipapillata]
          Length = 175

 Score =  204 bits (520), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 67/150 (44%), Positives = 103/150 (68%), Gaps = 2/150 (1%)

Query: 36  KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA-SPRQSD 94
           +GF  T +DQ+V  AR  SL  + F  +CC +E M      YDL RFG    + SPRQ+D
Sbjct: 11  EGFFATKLDQVVGLARANSLWPLPFATSCCGIEFMATMASHYDLARFGSERVSFSPRQAD 70

Query: 95  VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154
           +++V GT++ KMA  LR+VY+QM EPR+VI++G+CA+ GG +  +YSV++G D+++PVD+
Sbjct: 71  MLLVMGTISKKMAPILRQVYEQMSEPRWVIAVGACASSGGIF-DTYSVLQGIDKVIPVDV 129

Query: 155 YVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           YVPGCPP  E ++ G++ LQ+ ++     +
Sbjct: 130 YVPGCPPRPEQIVDGVMQLQELVKSESQRR 159


>gi|296140852|ref|YP_003648095.1| NADH-quinone oxidoreductase subunit beta [Tsukamurella
           paurometabola DSM 20162]
 gi|296028986|gb|ADG79756.1| NADH-quinone oxidoreductase, B subunit [Tsukamurella paurometabola
           DSM 20162]
          Length = 184

 Score =  204 bits (520), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 76/148 (51%), Positives = 108/148 (72%), Gaps = 2/148 (1%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89
            +    GFL+++++ +  +AR GSL   TFGLACCA+EMM  + PR+D+ RFG    RAS
Sbjct: 4   EDKVPGGFLLSTLETVAGYARKGSLWPATFGLACCAIEMMATTGPRFDIARFGMEAFRAS 63

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQ+D+MIVAG ++ KMA  LR+VYDQM EP++V++MG CA+ GG ++  Y+VV+G D +
Sbjct: 64  PRQADLMIVAGRVSQKMAPVLRQVYDQMAEPKWVLAMGVCASSGGMFNN-YAVVQGVDHV 122

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKI 177
           VPVDIY+PGCPP  E L+  ++ L  K+
Sbjct: 123 VPVDIYLPGCPPRPEMLLNALIALHDKV 150


>gi|322369187|ref|ZP_08043752.1| NADH-quinone oxidoreductase, B subunit [Haladaptatus
           paucihalophilus DX253]
 gi|320550919|gb|EFW92568.1| NADH-quinone oxidoreductase, B subunit [Haladaptatus
           paucihalophilus DX253]
          Length = 211

 Score =  204 bits (520), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 76/160 (47%), Positives = 114/160 (71%), Gaps = 2/160 (1%)

Query: 20  EKVDADF-SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78
           E VD  F S++        F++T  D+ + W R  S+  + FG+ACC++EMM     ++D
Sbjct: 3   EGVDDRFNSKLREAFGASPFILTKFDKFMNWVRGSSMFMLQFGIACCSIEMMHTYAVKHD 62

Query: 79  LERFGF-APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137
           L+RFG   PRASPRQ+DVMIV GT+ +K A  ++RVYDQMPEP++V++MGSCA  GG + 
Sbjct: 63  LDRFGSGVPRASPRQADVMIVPGTVVSKFAPRMKRVYDQMPEPKFVVNMGSCAISGGPFQ 122

Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
             Y+V++G + ++P+DI+VPGCPP  EAL+YG++ LQ+++
Sbjct: 123 EGYNVIKGAEEVIPIDIHVPGCPPRPEALVYGVVKLQERV 162


>gi|291437889|ref|ZP_06577279.1| NADH dehydrogenase subunit NuoB2 [Streptomyces ghanaensis ATCC
           14672]
 gi|291340784|gb|EFE67740.1| NADH dehydrogenase subunit NuoB2 [Streptomyces ghanaensis ATCC
           14672]
          Length = 229

 Score =  204 bits (520), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 78/136 (57%), Positives = 102/136 (75%), Gaps = 1/136 (0%)

Query: 46  LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR-ASPRQSDVMIVAGTLTN 104
           ++ W R  SL    FGLACCA+E + ASM R+D  R G  P    PRQ+D+M+V+GT+T+
Sbjct: 46  VLNWGRRYSLWVFNFGLACCAIEFIAASMARHDFIRLGVIPFAPGPRQADLMVVSGTVTD 105

Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164
           KMA A++R+Y+QMPEP+YVIS G+C+N GG Y  SYSV +G D+I+PVD+YVPGCPP  E
Sbjct: 106 KMAPAVKRLYEQMPEPKYVISFGACSNCGGPYWDSYSVTKGVDQIIPVDVYVPGCPPRPE 165

Query: 165 ALIYGILLLQKKIRRV 180
           AL+ GIL LQ+KI R 
Sbjct: 166 ALLQGILKLQEKIARE 181


>gi|82702143|ref|YP_411709.1| NADH dehydrogenase subunit B [Nitrosospira multiformis ATCC 25196]
 gi|123544779|sp|Q2YAA4|NUOB1_NITMU RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName:
           Full=NADH dehydrogenase I subunit B 1; AltName:
           Full=NDH-1 subunit B 1
 gi|82410208|gb|ABB74317.1| NADH dehydrogenase subunit B [Nitrosospira multiformis ATCC 25196]
          Length = 221

 Score =  204 bits (520), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 80/175 (45%), Positives = 105/175 (60%), Gaps = 2/175 (1%)

Query: 8   QKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAV 67
            K     S  +             E   +  L+T +  LV W R  S+    FGL+CC V
Sbjct: 6   SKPSDKPSGPATPGSSIIRDNGFEEDGRRSVLLTRLQDLVAWGRKNSVWPYNFGLSCCYV 65

Query: 68  EMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISM 126
           EM  +   +YDL RFG    RASPRQ+D+++++GT+  KMA  L+R+YDQM EPR+VISM
Sbjct: 66  EMATSFTSKYDLARFGSEVIRASPRQADLIVISGTVFIKMAPVLQRLYDQMLEPRWVISM 125

Query: 127 GSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
           GSCAN GG Y   YSVV+G DR +PVD+YVPGCPP  +A + G+ LLQ  I +  
Sbjct: 126 GSCANSGGMY-DIYSVVQGVDRFLPVDVYVPGCPPRPDAFMQGLNLLQDAIGKEK 179


>gi|239929563|ref|ZP_04686516.1| NADH dehydrogenase I chain B [Streptomyces ghanaensis ATCC 14672]
          Length = 231

 Score =  204 bits (520), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 78/136 (57%), Positives = 102/136 (75%), Gaps = 1/136 (0%)

Query: 46  LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR-ASPRQSDVMIVAGTLTN 104
           ++ W R  SL    FGLACCA+E + ASM R+D  R G  P    PRQ+D+M+V+GT+T+
Sbjct: 48  VLNWGRRYSLWVFNFGLACCAIEFIAASMARHDFIRLGVIPFAPGPRQADLMVVSGTVTD 107

Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164
           KMA A++R+Y+QMPEP+YVIS G+C+N GG Y  SYSV +G D+I+PVD+YVPGCPP  E
Sbjct: 108 KMAPAVKRLYEQMPEPKYVISFGACSNCGGPYWDSYSVTKGVDQIIPVDVYVPGCPPRPE 167

Query: 165 ALIYGILLLQKKIRRV 180
           AL+ GIL LQ+KI R 
Sbjct: 168 ALLQGILKLQEKIARE 183


>gi|118467443|ref|YP_886423.1| NADH dehydrogenase subunit B [Mycobacterium smegmatis str. MC2 155]
 gi|238065179|sp|A0QU35|NUOB_MYCS2 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|118168730|gb|ABK69626.1| NADH-quinone oxidoreductase, B subunit [Mycobacterium smegmatis
           str. MC2 155]
          Length = 184

 Score =  204 bits (520), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 76/151 (50%), Positives = 109/151 (72%), Gaps = 2/151 (1%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89
            E    G L+++V+ +  + R GSL   TFGLACCA+EMM  + PR+D+ RFG     A+
Sbjct: 4   EERLPGGILLSTVETVAGYVRKGSLWPATFGLACCAIEMMSTAGPRFDIARFGMERFSAT 63

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQ+D+MIVAG ++ KMA  LR++YDQM EP++V++MG CA+ GG ++  Y+VV+G D +
Sbjct: 64  PRQADLMIVAGRVSQKMAPVLRQIYDQMVEPKWVLAMGVCASSGGMFNN-YAVVQGVDHV 122

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           VPVDIY+PGCPP  E L++ IL L  KI+++
Sbjct: 123 VPVDIYLPGCPPRPEMLLHAILKLHDKIQQM 153


>gi|15597834|ref|NP_251328.1| NADH dehydrogenase subunit B [Pseudomonas aeruginosa PAO1]
 gi|107102158|ref|ZP_01366076.1| hypothetical protein PaerPA_01003208 [Pseudomonas aeruginosa PACS2]
 gi|116050625|ref|YP_790556.1| NADH dehydrogenase subunit B [Pseudomonas aeruginosa UCBPP-PA14]
 gi|218891201|ref|YP_002440067.1| NADH dehydrogenase subunit B [Pseudomonas aeruginosa LESB58]
 gi|254235623|ref|ZP_04928946.1| NADH dehydrogenase I chain B [Pseudomonas aeruginosa C3719]
 gi|254241070|ref|ZP_04934392.1| NADH dehydrogenase I chain B [Pseudomonas aeruginosa 2192]
 gi|296388901|ref|ZP_06878376.1| NADH dehydrogenase subunit B [Pseudomonas aeruginosa PAb1]
 gi|313107676|ref|ZP_07793858.1| NADH dehydrogenase I chain B [Pseudomonas aeruginosa 39016]
 gi|81622300|sp|Q9I0K0|NUOB_PSEAE RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|122259748|sp|Q02ND0|NUOB_PSEAB RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|238065194|sp|B7VAR4|NUOB_PSEA8 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|9948706|gb|AAG06026.1|AE004692_5 NADH dehydrogenase I chain B [Pseudomonas aeruginosa PAO1]
 gi|115585846|gb|ABJ11861.1| NADH dehydrogenase I chain B [Pseudomonas aeruginosa UCBPP-PA14]
 gi|126167554|gb|EAZ53065.1| NADH dehydrogenase I chain B [Pseudomonas aeruginosa C3719]
 gi|126194448|gb|EAZ58511.1| NADH dehydrogenase I chain B [Pseudomonas aeruginosa 2192]
 gi|218771426|emb|CAW27193.1| NADH dehydrogenase I chain B [Pseudomonas aeruginosa LESB58]
 gi|310880360|gb|EFQ38954.1| NADH dehydrogenase I chain B [Pseudomonas aeruginosa 39016]
          Length = 225

 Score =  204 bits (519), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 77/184 (41%), Positives = 110/184 (59%), Gaps = 8/184 (4%)

Query: 3   LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQL----VTWARTGSLMWM 58
           LT ++    + Q    + + +     +     HK   +  ++ +    V W R  SL   
Sbjct: 5   LTRIDPDAANDQ--YPIGERETVADPLVEGQVHKNIFMGKLEDVLNSTVNWGRKNSLWPY 62

Query: 59  TFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQM 117
            FGL+CC VEM  A    +D+ RFG    RASPRQ+D M++AGT   KMA  ++R+Y+QM
Sbjct: 63  NFGLSCCYVEMTTAFTAPHDIARFGAEVIRASPRQADFMVIAGTCFIKMAPVIQRLYEQM 122

Query: 118 PEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
            EP++VISMGSCAN GG Y   YSVV+G D+ +PVD+Y+PGCPP  EA + G++LLQ+ I
Sbjct: 123 LEPKWVISMGSCANSGGMY-DIYSVVQGVDKFLPVDVYIPGCPPRPEAFLQGLMLLQESI 181

Query: 178 RRVG 181
            +  
Sbjct: 182 GQER 185


>gi|169634180|ref|YP_001707916.1| NADH dehydrogenase subunit B [Acinetobacter baumannii SDF]
 gi|169797057|ref|YP_001714850.1| NADH dehydrogenase subunit B [Acinetobacter baumannii AYE]
 gi|184157030|ref|YP_001845369.1| NADH dehydrogenase subunit B [Acinetobacter baumannii ACICU]
 gi|213156537|ref|YP_002318198.1| NADH dehydrogenase I chain B [Acinetobacter baumannii AB0057]
 gi|215484518|ref|YP_002326753.1| NAD(P)H-quinone oxidoreductase subunit K [Acinetobacter baumannii
           AB307-0294]
 gi|239501293|ref|ZP_04660603.1| NADH dehydrogenase subunit B [Acinetobacter baumannii AB900]
 gi|260555651|ref|ZP_05827871.1| NADH:ubiquinone oxidoreductase 20 kDa subunit [Acinetobacter
           baumannii ATCC 19606]
 gi|301347793|ref|ZP_07228534.1| NADH dehydrogenase subunit B [Acinetobacter baumannii AB056]
 gi|301510628|ref|ZP_07235865.1| NADH dehydrogenase subunit B [Acinetobacter baumannii AB058]
 gi|301595913|ref|ZP_07240921.1| NADH dehydrogenase subunit B [Acinetobacter baumannii AB059]
 gi|332852146|ref|ZP_08433973.1| NADH dehydrogenase I subunit B [Acinetobacter baumannii 6013150]
 gi|332867545|ref|ZP_08437698.1| NADH dehydrogenase I subunit B [Acinetobacter baumannii 6013113]
 gi|332872605|ref|ZP_08440573.1| NADH dehydrogenase I subunit B [Acinetobacter baumannii 6014059]
 gi|238065045|sp|B7GZC0|NUOB_ACIB3 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|238065046|sp|B7I740|NUOB_ACIB5 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|238065047|sp|B2HU42|NUOB_ACIBC RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|238065048|sp|B0VU55|NUOB_ACIBS RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|238065065|sp|B0V7U7|NUOB_ACIBY RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|238065077|sp|A3M2P9|NUOB_ACIBT RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|169149984|emb|CAM87878.1| NADH dehydrogenase I chain B [Acinetobacter baumannii AYE]
 gi|169152972|emb|CAP02018.1| NADH dehydrogenase I chain B [Acinetobacter baumannii]
 gi|183208624|gb|ACC56022.1| NADH:ubiquinone oxidoreductase 20 kD subunit [Acinetobacter
           baumannii ACICU]
 gi|193076535|gb|ABO11193.2| NADH dehydrogenase I chain B [Acinetobacter baumannii ATCC 17978]
 gi|213055697|gb|ACJ40599.1| NADH dehydrogenase I chain B [Acinetobacter baumannii AB0057]
 gi|213987919|gb|ACJ58218.1| NAD(P)H-quinone oxidoreductase subunit K [Acinetobacter baumannii
           AB307-0294]
 gi|260410562|gb|EEX03860.1| NADH:ubiquinone oxidoreductase 20 kDa subunit [Acinetobacter
           baumannii ATCC 19606]
 gi|322506929|gb|ADX02383.1| nuoB [Acinetobacter baumannii 1656-2]
 gi|323516796|gb|ADX91177.1| NADH dehydrogenase subunit B [Acinetobacter baumannii TCDC-AB0715]
 gi|332729518|gb|EGJ60857.1| NADH dehydrogenase I subunit B [Acinetobacter baumannii 6013150]
 gi|332733962|gb|EGJ65107.1| NADH dehydrogenase I subunit B [Acinetobacter baumannii 6013113]
 gi|332739134|gb|EGJ69993.1| NADH dehydrogenase I subunit B [Acinetobacter baumannii 6014059]
          Length = 225

 Score =  204 bits (519), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 81/181 (44%), Positives = 108/181 (59%), Gaps = 11/181 (6%)

Query: 3   LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQL----VTWARTGSLMWM 58
           LT  N           L+        +  E+ +K   +T ++ +    V W R  SL   
Sbjct: 5   LTRANP----DADQYPLQDRQIVTDPLEEEV-NKNVFMTRLEDVLHTAVNWGRKNSLWPF 59

Query: 59  TFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQM 117
            FG +CC VE        +DL RFG    RASPRQ+D+MIVAGT   KMA  ++R+Y+QM
Sbjct: 60  NFGTSCCYVEYATTLTGVHDLSRFGAEVIRASPRQADLMIVAGTCFVKMAPVIQRLYEQM 119

Query: 118 PEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
            EP++VISMG+CAN GG Y   YSVV+G D+I+PVD+YVPGCPP  EALI  ++LLQ +I
Sbjct: 120 LEPKWVISMGACANSGGMY-DIYSVVQGVDKIIPVDVYVPGCPPRPEALIQALMLLQDQI 178

Query: 178 R 178
           +
Sbjct: 179 Q 179


>gi|302521251|ref|ZP_07273593.1| NADH dehydrogenase subunit NuoB2 [Streptomyces sp. SPB78]
 gi|302430146|gb|EFL01962.1| NADH dehydrogenase subunit NuoB2 [Streptomyces sp. SPB78]
          Length = 243

 Score =  204 bits (519), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 81/181 (44%), Positives = 112/181 (61%), Gaps = 10/181 (5%)

Query: 1   MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTF 60
           +  T V   +     +          SR++ +          +  ++ W R  SL    F
Sbjct: 45  VPTTAVPAPVDLPDPTAPPAGTTGVLSRLAPQ---------PMKVVLNWGRRYSLWVFNF 95

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPR-ASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119
           GLACCA+E + ASM R+D  R G  P    PRQ+D+M+V+GT+T+KMA A++R+Y+QMPE
Sbjct: 96  GLACCAIEFIAASMSRHDFIRLGVIPFAPGPRQADLMVVSGTVTDKMAPAVKRLYEQMPE 155

Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           P+YVIS G+C+N GG Y  SYSV +G D+I+PVD+YVPGCPP  EAL+ GIL LQ+KI  
Sbjct: 156 PKYVISFGACSNCGGPYWDSYSVTKGVDQIIPVDVYVPGCPPRPEALLQGILKLQEKIAH 215

Query: 180 V 180
            
Sbjct: 216 E 216


>gi|296130550|ref|YP_003637800.1| NADH-quinone oxidoreductase, B subunit [Cellulomonas flavigena DSM
           20109]
 gi|296022365|gb|ADG75601.1| NADH-quinone oxidoreductase, B subunit [Cellulomonas flavigena DSM
           20109]
          Length = 183

 Score =  204 bits (519), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 81/148 (54%), Positives = 108/148 (72%), Gaps = 2/148 (1%)

Query: 32  EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASP 90
           E    GFL+T+V+ LV + R  SL  +TFGLACCA+EMM A   RYD+ R G    RASP
Sbjct: 4   EEAPSGFLLTTVEDLVGYFRKASLWPVTFGLACCAIEMMAAGTSRYDISRLGMEVFRASP 63

Query: 91  RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150
           RQSD+MIVAG ++ KMA  +R+VYDQM  P++V+SMG CA+ GG ++  Y++V+G D IV
Sbjct: 64  RQSDLMIVAGRVSQKMAPIVRQVYDQMAGPKWVLSMGVCASSGGMFNN-YAIVQGVDHIV 122

Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIR 178
           PVDIY+PGCPP  E L++ IL L ++I+
Sbjct: 123 PVDIYLPGCPPRPEMLLHAILALHQQIQ 150


>gi|23092541|gb|AAN08352.1| NADH dehydrogenase I subunit B [Photorhabdus temperata subsp.
           temperata]
          Length = 224

 Score =  204 bits (519), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 78/181 (43%), Positives = 111/181 (61%), Gaps = 3/181 (1%)

Query: 3   LTTVNQKIISGQSSCSLEKVDAD-FSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFG 61
           LT ++    + +     +++ AD   +      + G L  ++  LV W R  SL    FG
Sbjct: 5   LTRIDPNGENDRYPLQKQEIVADPLEQHVHRSVYMGKLEHALHDLVNWGRKNSLWPYNFG 64

Query: 62  LACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           L+CC VEM  +    +D+ RFG    RASPRQ+D M+VAGT   KMA  ++R+YDQM EP
Sbjct: 65  LSCCYVEMATSFTAVHDVARFGAEVLRASPRQADFMVVAGTCFTKMAPVIQRLYDQMLEP 124

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           ++VISMG+CAN GG Y   YSVV+G D+ +PVD+Y+PGCPP  EA +  ++LLQ+ I + 
Sbjct: 125 KWVISMGACANSGGMY-DIYSVVQGVDKFIPVDVYIPGCPPRPEAYMQALMLLQESIGKE 183

Query: 181 G 181
            
Sbjct: 184 R 184


>gi|152988699|ref|YP_001347933.1| NADH dehydrogenase subunit B [Pseudomonas aeruginosa PA7]
 gi|238065193|sp|A6V4E8|NUOB_PSEA7 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|150963857|gb|ABR85882.1| NADH dehydrogenase I chain B [Pseudomonas aeruginosa PA7]
          Length = 225

 Score =  204 bits (519), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 77/184 (41%), Positives = 110/184 (59%), Gaps = 8/184 (4%)

Query: 3   LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQL----VTWARTGSLMWM 58
           LT ++    + Q    + + +     +     HK   +  ++ +    V W R  SL   
Sbjct: 5   LTRIDPDAANDQ--YPIGERETVADPLVEGQVHKNIFMGKLEDVLNSTVNWGRKNSLWPY 62

Query: 59  TFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQM 117
            FGL+CC VEM  A    +D+ RFG    RASPRQ+D M++AGT   KMA  ++R+Y+QM
Sbjct: 63  NFGLSCCYVEMTTAFTAPHDIARFGAEVIRASPRQADFMVIAGTCFIKMAPVIQRLYEQM 122

Query: 118 PEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
            EP++VISMGSCAN GG Y   YSVV+G D+ +PVD+Y+PGCPP  EA + G++LLQ+ I
Sbjct: 123 LEPKWVISMGSCANSGGMY-DIYSVVQGVDKFLPVDVYIPGCPPRPEAFLQGLMLLQESI 181

Query: 178 RRVG 181
            +  
Sbjct: 182 GQER 185


>gi|294496248|ref|YP_003542741.1| F420H2 dehydrogenase subunit B [Methanohalophilus mahii DSM 5219]
 gi|292667247|gb|ADE37096.1| F420H2 dehydrogenase subunit B [Methanohalophilus mahii DSM 5219]
          Length = 191

 Score =  204 bits (519), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 69/150 (46%), Positives = 95/150 (63%)

Query: 29  ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88
            +S+  +K    T     + W R  SL +M   + CC VE++   M   D +RFG  PR 
Sbjct: 31  TTSQEINKFLQKTKAQDFINWGRKNSLWFMAQAMGCCGVEIIVTGMSPMDTDRFGIIPRN 90

Query: 89  SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 148
           SPRQ+DVMI++G +T K   AL+++YDQMP P++VI MG C+  GG ++ SYS V+  D 
Sbjct: 91  SPRQADVMIISGYVTKKYLPALKKLYDQMPSPKWVICMGDCSISGGPFYESYSTVQNIDE 150

Query: 149 IVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           I PVD+++PGCPP  EALI G L +QKKI 
Sbjct: 151 IFPVDVFIPGCPPRPEALIQGFLEIQKKIE 180


>gi|146312473|ref|YP_001177547.1| NADH dehydrogenase subunit B [Enterobacter sp. 638]
 gi|238065140|sp|A4WCR6|NUOB_ENT38 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|145319349|gb|ABP61496.1| NADH dehydrogenase subunit B [Enterobacter sp. 638]
          Length = 224

 Score =  204 bits (519), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 76/172 (44%), Positives = 106/172 (61%), Gaps = 5/172 (2%)

Query: 14  QSSCSLEKVDADFSRISSEITHK---GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMM 70
                L+K +     +  EI      G L  ++  +V W R  S+    FGL+CC VEM+
Sbjct: 14  NDRYPLQKQEIVTDPLEQEINKSVYMGKLEHAMHDMVNWGRKNSIWPYNFGLSCCYVEMV 73

Query: 71  QASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSC 129
            +    +D+ RFG    RASPRQ+D+M+VAGT   KMA  ++R+YDQM EP++VISMG+C
Sbjct: 74  TSFTAVHDVARFGAEVLRASPRQADLMVVAGTCFTKMAPVIQRLYDQMLEPKWVISMGAC 133

Query: 130 ANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
           AN GG Y   YSVV+G D+ +PVD+Y+PGCPP  EA +  ++LLQ  I +  
Sbjct: 134 ANSGGMY-DIYSVVQGVDKFIPVDVYIPGCPPRPEAYMQALMLLQDSIGKER 184


>gi|320095549|ref|ZP_08027213.1| NADH-quinone oxidoreductase subunit B [Actinomyces sp. oral taxon
           178 str. F0338]
 gi|319977527|gb|EFW09206.1| NADH-quinone oxidoreductase subunit B [Actinomyces sp. oral taxon
           178 str. F0338]
          Length = 184

 Score =  204 bits (519), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 81/151 (53%), Positives = 113/151 (74%), Gaps = 2/151 (1%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89
            E    G  +TSV++++  AR  S   +T GLACCA+EMM A  PR+D+ RFG    RAS
Sbjct: 4   EESLPAGIALTSVEKVLGLARKHSQWPVTMGLACCAIEMMAAGTPRFDMARFGLEVFRAS 63

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PR SD+MIV+G +++KMA  +RRVYD MPEP++VISMG+CA+ GG ++  Y+VV+GCD I
Sbjct: 64  PRHSDLMIVSGRVSHKMAPIIRRVYDSMPEPKWVISMGACASSGGVFNN-YAVVQGCDHI 122

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           VPVD+Y+PGCPP  EALI+ +L+L+++I + 
Sbjct: 123 VPVDVYLPGCPPRPEALIHAVLVLREQIGKE 153


>gi|148699632|gb|EDL31579.1| NADH dehydrogenase (ubiquinone) Fe-S protein 7, isoform CRA_a [Mus
           musculus]
          Length = 199

 Score =  204 bits (519), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 96/124 (77%), Positives = 107/124 (86%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
           +   ++VT +D L+ WAR  SL  MTFGLACCAVEMM  + PRYD++RFG   RASPRQ+
Sbjct: 69  SRAEYVVTKLDDLINWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQA 128

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD 153
           DVMIVAGTLTNKMA ALR+VYDQMPEPRYV+SMGSCANGGGYYHYSYSVVRGCDRIVPVD
Sbjct: 129 DVMIVAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPVD 188

Query: 154 IYVP 157
           IYVP
Sbjct: 189 IYVP 192


>gi|262369334|ref|ZP_06062662.1| NADH dehydrogenase subunit I B [Acinetobacter johnsonii SH046]
 gi|262315402|gb|EEY96441.1| NADH dehydrogenase subunit I B [Acinetobacter johnsonii SH046]
          Length = 225

 Score =  204 bits (519), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 79/181 (43%), Positives = 109/181 (60%), Gaps = 11/181 (6%)

Query: 3   LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQL----VTWARTGSLMWM 58
           LT  N           L++       +  E+ +K   +T ++ +    V W R  S+   
Sbjct: 5   LTRANP----DADQYPLQERQIVTDPLEEEV-NKNVFMTRLEDVAHTAVNWGRKNSVWPF 59

Query: 59  TFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQM 117
            FG +CC VE        +DL RFG    RASPRQ+D+MIVAGT   KMA  ++R+Y+QM
Sbjct: 60  NFGTSCCYVEYATTLTGVHDLSRFGAEVIRASPRQADLMIVAGTCFVKMAPVIQRLYEQM 119

Query: 118 PEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
            EP++VISMG+CAN GG Y   YSVV+G D+I+PVD+Y+PGCPP  EALI  ++LLQ +I
Sbjct: 120 LEPKWVISMGACANSGGMY-DIYSVVQGVDKIIPVDVYIPGCPPRPEALIQALMLLQDQI 178

Query: 178 R 178
           +
Sbjct: 179 Q 179


>gi|268317701|ref|YP_003291420.1| NADH-quinone oxidoreductase, B subunit [Rhodothermus marinus DSM
           4252]
 gi|262335235|gb|ACY49032.1| NADH-quinone oxidoreductase, B subunit [Rhodothermus marinus DSM
           4252]
          Length = 194

 Score =  204 bits (519), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 80/151 (52%), Positives = 111/151 (73%), Gaps = 2/151 (1%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQ 92
             +GFL T +D L+ WAR+ SLM M  GLACCA+EMM  + P+YD+ RFG    R SPRQ
Sbjct: 4   LREGFLTTRLDVLLNWARSNSLMPMPMGLACCAIEMMAFAGPKYDVARFGSEAMRFSPRQ 63

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           +D+MIVAG  + KMA A+RRV+DQMP+P++ I+MG+CA+ GG  H  Y VV+G D  +PV
Sbjct: 64  ADLMIVAGWCSYKMAHAIRRVWDQMPDPKWCIAMGACASTGGM-HRCYGVVQGVDNFLPV 122

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           D+Y+PGCPP  EA+++ ++ +Q+KIR   +V
Sbjct: 123 DVYIPGCPPRPEAVLHALMDIQEKIRNEYSV 153


>gi|317123870|ref|YP_004097982.1| NADH dehydrogenase subunit B [Intrasporangium calvum DSM 43043]
 gi|315587958|gb|ADU47255.1| NADH dehydrogenase subunit B [Intrasporangium calvum DSM 43043]
          Length = 221

 Score =  204 bits (519), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 78/142 (54%), Positives = 102/142 (71%), Gaps = 1/142 (0%)

Query: 41  TSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR-ASPRQSDVMIVA 99
             +  L+ W R  SL    FGLACCA+E +  SM R+D  R G  P    PRQ+D+MIV+
Sbjct: 28  KPIKVLLNWGRRYSLWVFNFGLACCAIEFIATSMARHDFMRLGVIPFAPGPRQADLMIVS 87

Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGC 159
           GT+T+KMA A+RR+YDQMPEP+YVIS G+CAN GG Y  SYSV +G D ++PVD+YVPGC
Sbjct: 88  GTVTDKMAPAIRRLYDQMPEPKYVISFGACANSGGPYWDSYSVTKGVDTVIPVDVYVPGC 147

Query: 160 PPTAEALIYGILLLQKKIRRVG 181
           PP  EAL++GI+ LQ++I +  
Sbjct: 148 PPRPEALLHGIIRLQEQIAQER 169


>gi|154508638|ref|ZP_02044280.1| hypothetical protein ACTODO_01139 [Actinomyces odontolyticus ATCC
           17982]
 gi|293191717|ref|ZP_06609274.1| NADH dehydrogenase I subunit B [Actinomyces odontolyticus F0309]
 gi|153798272|gb|EDN80692.1| hypothetical protein ACTODO_01139 [Actinomyces odontolyticus ATCC
           17982]
 gi|292820489|gb|EFF79471.1| NADH dehydrogenase I subunit B [Actinomyces odontolyticus F0309]
          Length = 184

 Score =  204 bits (519), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 80/151 (52%), Positives = 113/151 (74%), Gaps = 2/151 (1%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89
            E    G  +TSV++++  AR  S   +T GLACCA+EMM A  PR+D+ RFG    RAS
Sbjct: 4   EESLPAGIALTSVEKVLGLARKYSQWPVTMGLACCAIEMMAAGTPRFDMARFGLEVFRAS 63

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PR +D+MIV+G +++KMA  +RRVYD MPEP++VISMG+CA+ GG ++  Y+VV+GCD I
Sbjct: 64  PRHADMMIVSGRVSHKMAPIIRRVYDSMPEPKWVISMGACASSGGVFNN-YAVVQGCDHI 122

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           VPVD+Y+PGCPP  EALI+ +L+L+++I + 
Sbjct: 123 VPVDVYLPGCPPRPEALIHAVLVLREQIGKE 153


>gi|329938298|ref|ZP_08287749.1| NADH dehydrogenase subunit NuoB2 [Streptomyces griseoaurantiacus
           M045]
 gi|329302787|gb|EGG46677.1| NADH dehydrogenase subunit NuoB2 [Streptomyces griseoaurantiacus
           M045]
          Length = 308

 Score =  204 bits (518), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 76/136 (55%), Positives = 102/136 (75%), Gaps = 1/136 (0%)

Query: 46  LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR-ASPRQSDVMIVAGTLTN 104
           ++ W R  SL    FGLACCA+E + ASM R+D  R G  P    PRQ+D+M+V+GT+T+
Sbjct: 75  VLNWGRRYSLWVFNFGLACCAIEFIAASMSRHDFMRLGVIPFAPGPRQADLMVVSGTVTD 134

Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164
           KMA A++R+Y+QMPEP+YVIS G+C+N GG Y  SY+V +G D+I+PVD+YVPGCPP  E
Sbjct: 135 KMAPAVKRLYEQMPEPKYVISFGACSNCGGPYWDSYAVTKGVDQIIPVDVYVPGCPPRPE 194

Query: 165 ALIYGILLLQKKIRRV 180
           AL+ GI+ LQ+KI R 
Sbjct: 195 ALLQGIIKLQEKIARE 210


>gi|261340675|ref|ZP_05968533.1| NADH dehydrogenase I subunit B [Enterobacter cancerogenus ATCC
           35316]
 gi|288317089|gb|EFC56027.1| NADH dehydrogenase I subunit B [Enterobacter cancerogenus ATCC
           35316]
          Length = 224

 Score =  204 bits (518), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 75/172 (43%), Positives = 107/172 (62%), Gaps = 5/172 (2%)

Query: 14  QSSCSLEKVDADFSRISSEITHK---GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMM 70
                L+K +     +  E+      G L  ++  +V W R  S+    FGL+CC VEM+
Sbjct: 14  NDRYPLQKQEIVTDPLEQEVNKSVYMGKLEHAMHDMVNWGRKNSIWPYNFGLSCCYVEMV 73

Query: 71  QASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSC 129
            +    +D+ RFG    RASPRQ+D+M+VAGT   KMA  ++R+YDQM EP++VISMG+C
Sbjct: 74  TSFTAVHDVARFGAEVLRASPRQADLMVVAGTCFTKMAPVIQRLYDQMLEPKWVISMGAC 133

Query: 130 ANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
           AN GG Y   YSVV+G D+ +PVD+Y+PGCPP  EA +  ++LLQ+ I +  
Sbjct: 134 ANSGGMY-DIYSVVQGVDKFIPVDVYIPGCPPRPEAYMQALMLLQESIGKER 184


>gi|293395171|ref|ZP_06639457.1| NADH dehydrogenase I subunit B [Serratia odorifera DSM 4582]
 gi|291422348|gb|EFE95591.1| NADH dehydrogenase I subunit B [Serratia odorifera DSM 4582]
          Length = 224

 Score =  204 bits (518), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 77/181 (42%), Positives = 112/181 (61%), Gaps = 3/181 (1%)

Query: 3   LTTVNQKIISGQSSCSLEKVDAD-FSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFG 61
           LT ++    + +     +++ AD   +      + G L  ++  +V W R  SL    FG
Sbjct: 5   LTRIDPNGENDRYPLQQQEIVADPLEQQVHRTVYMGKLEHALHDMVNWGRKNSLWPYNFG 64

Query: 62  LACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           L+CC VEM+ +    +D+ RFG    RASPRQ+D M+VAGT   KMA  ++R+Y+QM EP
Sbjct: 65  LSCCYVEMVTSFTAVHDVARFGAEVLRASPRQADFMVVAGTCFTKMAPVIQRLYEQMLEP 124

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           ++VISMG+CAN GG Y   YSVV+G D+ +PVD+Y+PGCPP  EA +  +LLLQ+ I + 
Sbjct: 125 KWVISMGACANSGGMY-DIYSVVQGVDKFLPVDVYIPGCPPRPEAYMQALLLLQESIGKE 183

Query: 181 G 181
            
Sbjct: 184 R 184


>gi|227497895|ref|ZP_03928075.1| NADH dehydrogenase (quinone) [Actinomyces urogenitalis DSM 15434]
 gi|226832687|gb|EEH65070.1| NADH dehydrogenase (quinone) [Actinomyces urogenitalis DSM 15434]
          Length = 209

 Score =  204 bits (518), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 82/158 (51%), Positives = 113/158 (71%), Gaps = 2/158 (1%)

Query: 28  RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-P 86
           +    +   GFL+TSV++L   A+  SL  +T GLACCA+EMM  + PR+DL RFG+   
Sbjct: 26  QAEESVEGPGFLLTSVEKLSALAQARSLWPVTMGLACCAIEMMATAAPRFDLSRFGWEVF 85

Query: 87  RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGC 146
           RASPR +DVM+V+G +++KMA  +R VYD MPEP++VISMG+CA+ GG ++  Y++V+GC
Sbjct: 86  RASPRHADVMLVSGRVSHKMAPIVRNVYDAMPEPKWVISMGACASSGGIFNN-YAIVQGC 144

Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           D IVPVDIY+PGCPP  E LI  +L L ++I R    K
Sbjct: 145 DHIVPVDIYLPGCPPRPEMLINAMLELTRQIERRPVFK 182


>gi|259907928|ref|YP_002648284.1| NADH dehydrogenase subunit B [Erwinia pyrifoliae Ep1/96]
 gi|224963550|emb|CAX55040.1| NADH dehydrogenase I chain B [Erwinia pyrifoliae Ep1/96]
 gi|283477809|emb|CAY73725.1| NADH dehydrogenase I chain B [Erwinia pyrifoliae DSM 12163]
          Length = 224

 Score =  204 bits (518), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 76/172 (44%), Positives = 104/172 (60%), Gaps = 5/172 (2%)

Query: 14  QSSCSLEKVDADFSRISSEITHK---GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMM 70
                L+K +     +   +      G L  ++  +V W R  SL    FGL+CC VEM 
Sbjct: 14  NDRYPLQKQEIVTDPLEKHVHQNVYMGKLEHALHDMVNWGRKNSLWPFNFGLSCCYVEMT 73

Query: 71  QASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSC 129
            +    +D+ RFG    RASPRQ+D M+VAGT   KMA  ++R+YDQM EP++VISMG+C
Sbjct: 74  TSFTAVHDVARFGSEVIRASPRQADFMVVAGTCFTKMAPVIQRLYDQMLEPKWVISMGAC 133

Query: 130 ANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
           AN GG Y   YSVV+G D+ +PVD+Y+PGCPP  EA +  +LLLQ+ I +  
Sbjct: 134 ANSGGMY-DIYSVVQGVDKFLPVDVYIPGCPPRPEAYMQALLLLQESIGKER 184


>gi|310768164|gb|ADP13114.1| NADH dehydrogenase subunit B [Erwinia sp. Ejp617]
          Length = 224

 Score =  204 bits (518), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 76/172 (44%), Positives = 104/172 (60%), Gaps = 5/172 (2%)

Query: 14  QSSCSLEKVDADFSRISSEITHK---GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMM 70
                L+K +     +   +      G L  ++  +V W R  SL    FGL+CC VEM 
Sbjct: 14  NDRYPLQKQEIVTDPLEKHVHQNVYMGKLEHALHDMVNWGRKNSLWPFNFGLSCCYVEMT 73

Query: 71  QASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSC 129
            +    +D+ RFG    RASPRQ+D M+VAGT   KMA  ++R+YDQM EP++VISMG+C
Sbjct: 74  TSFTAVHDVARFGSEVIRASPRQADFMVVAGTCFTKMAPVVQRLYDQMLEPKWVISMGAC 133

Query: 130 ANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
           AN GG Y   YSVV+G D+ +PVD+Y+PGCPP  EA +  +LLLQ+ I +  
Sbjct: 134 ANSGGMY-DIYSVVQGVDKFLPVDVYIPGCPPRPEAYMQALLLLQESIGKER 184


>gi|330881187|gb|EGH15336.1| NADH dehydrogenase subunit B [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 224

 Score =  203 bits (517), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 75/175 (42%), Positives = 106/175 (60%), Gaps = 7/175 (4%)

Query: 12  SGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQL----VTWARTGSLMWMTFGLACCAV 67
           +      + K +     +  ++ HK   +  ++ +    V W R  SL    FGL+CC V
Sbjct: 12  APNEQYPIGKRETVSDPLEDQV-HKNIYMGKLEDVLNGAVNWGRKNSLWPYNFGLSCCYV 70

Query: 68  EMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISM 126
           EM  A    +D+ RFG    R SPRQ+D M++AGT   KMA  ++R+Y+QM EP++VISM
Sbjct: 71  EMTTAFTAPHDIARFGAEVIRGSPRQADFMVIAGTCFIKMAPIIQRLYEQMLEPKWVISM 130

Query: 127 GSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
           GSCAN GG Y   YSVV+G D+ +PVD+YVPGCPP  EA + G++LLQ+ I +  
Sbjct: 131 GSCANSGGMY-DIYSVVQGVDKFLPVDVYVPGCPPRPEAFLQGLMLLQESIGKER 184


>gi|111220500|ref|YP_711294.1| NADH dehydrogenase subunit B [Frankia alni ACN14a]
 gi|111148032|emb|CAJ59698.1| NADH dehydrogenase subunit [Frankia alni ACN14a]
          Length = 271

 Score =  203 bits (517), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 79/141 (56%), Positives = 104/141 (73%), Gaps = 2/141 (1%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQSDVM 96
            L+ SV++L  W+R  SL   TFGLACCA+EMM     RYDL RFG    RASPRQ+D+M
Sbjct: 1   MLLASVEKLANWSRRSSLWPATFGLACCAIEMMSTGAGRYDLSRFGMEVFRASPRQADLM 60

Query: 97  IVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV 156
           IVAG ++ KMA  LR++YDQMPEP++V+SMG CA+ GG ++  Y++V+G D IVPVD+Y+
Sbjct: 61  IVAGRVSQKMAPVLRQIYDQMPEPKWVLSMGVCASSGGMFNN-YAIVQGVDHIVPVDMYL 119

Query: 157 PGCPPTAEALIYGILLLQKKI 177
           PGCPP  E L+  I+ L +KI
Sbjct: 120 PGCPPRPEMLMDAIIKLHEKI 140


>gi|330503270|ref|YP_004380139.1| NADH dehydrogenase subunit B [Pseudomonas mendocina NK-01]
 gi|328917556|gb|AEB58387.1| NADH dehydrogenase subunit B [Pseudomonas mendocina NK-01]
          Length = 225

 Score =  203 bits (517), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 77/184 (41%), Positives = 110/184 (59%), Gaps = 8/184 (4%)

Query: 3   LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQL----VTWARTGSLMWM 58
           LT V+    +   +  + + +     +  +  HK   +  +  +    V W R  SL   
Sbjct: 5   LTRVDPN--APNEAYPIGQREVVSDPLLEDQVHKNIYMGKLSDVLNGAVNWGRKNSLWPY 62

Query: 59  TFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQM 117
            FGL+CC VEM  A    +D+ RFG    RASPRQ+D M++AGT   KMA  ++R+Y+QM
Sbjct: 63  NFGLSCCYVEMTTAFTAPHDVARFGAEVIRASPRQADFMVIAGTCFIKMAPVIQRLYEQM 122

Query: 118 PEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
            EP++VISMGSCAN GG Y   YSVV+G D+ +PVD+Y+PGCPP  EA + G++LLQ+ I
Sbjct: 123 LEPKWVISMGSCANSGGMY-DIYSVVQGVDKFLPVDVYIPGCPPRPEAFLQGLMLLQESI 181

Query: 178 RRVG 181
            +  
Sbjct: 182 GQER 185


>gi|303248401|ref|ZP_07334661.1| NADH dehydrogenase I, D subunit [Desulfovibrio fructosovorans JJ]
 gi|302490199|gb|EFL50117.1| NADH dehydrogenase I, D subunit [Desulfovibrio fructosovorans JJ]
          Length = 790

 Score =  203 bits (517), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 76/140 (54%), Positives = 100/140 (71%), Gaps = 2/140 (1%)

Query: 39  LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQSDVMI 97
           + +  D ++ WAR  SL    FGL+CC VE   A  PRYD+ R+G    R SPRQ+DV+I
Sbjct: 8   VFSPTDHIINWARKNSLWPFFFGLSCCFVEEATAWGPRYDIARYGSEVFRGSPRQADVLI 67

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           V+GT+  K+A    R+Y+QM +P++VISMGSC+N GG Y   YSVV+G D+I+PVD+Y+P
Sbjct: 68  VSGTMFKKIAPVALRLYEQMSDPKWVISMGSCSNSGGMY-DVYSVVQGSDQILPVDVYIP 126

Query: 158 GCPPTAEALIYGILLLQKKI 177
           GCPP  EAL  G+LLLQKKI
Sbjct: 127 GCPPRPEALFDGLLLLQKKI 146


>gi|256396791|ref|YP_003118355.1| NADH-quinone oxidoreductase subunit beta [Catenulispora acidiphila
           DSM 44928]
 gi|256363017|gb|ACU76514.1| NADH-quinone oxidoreductase, B subunit [Catenulispora acidiphila
           DSM 44928]
          Length = 184

 Score =  203 bits (517), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 78/151 (51%), Positives = 105/151 (69%), Gaps = 2/151 (1%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89
            E    GFL+T+V+ L  + R  S+   TFGLACCA+EMM     RYDL RFG     A+
Sbjct: 4   EEKLPAGFLLTTVEGLAGYMRKSSVWPATFGLACCAIEMMATGAGRYDLARFGMERFSAT 63

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQ+D+MIVAG ++ KMA  LR+VYDQM  P++VI+MG CA+ GG ++  Y++V+G D I
Sbjct: 64  PRQADLMIVAGRVSQKMAPVLRQVYDQMANPKWVIAMGVCASSGGMFNN-YAIVQGVDHI 122

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           VPVDIY+PGCPP  E L+  IL L ++I+ +
Sbjct: 123 VPVDIYLPGCPPRPEMLLDAILKLHEQIQSM 153


>gi|221039728|dbj|BAH11627.1| unnamed protein product [Homo sapiens]
          Length = 182

 Score =  203 bits (517), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 99/152 (65%), Positives = 115/152 (75%)

Query: 6   VNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACC 65
           V+Q + +   S +   +    +      +   ++V  +D LV WAR  SL  MTFGLACC
Sbjct: 30  VHQSVATDGPSSTQPALPKARAVAPKPSSRGEYVVAKLDDLVNWARRSSLWPMTFGLACC 89

Query: 66  AVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVIS 125
           AVEMM  + PRYD++RFG   RASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYV+S
Sbjct: 90  AVEMMHMAAPRYDMDRFGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVVS 149

Query: 126 MGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           MGSCANGGGYYHYSYSVVRGCDRIVPVDIY+P
Sbjct: 150 MGSCANGGGYYHYSYSVVRGCDRIVPVDIYIP 181


>gi|50083950|ref|YP_045460.1| NADH dehydrogenase subunit B [Acinetobacter sp. ADP1]
 gi|81393679|sp|Q6FE70|NUOB_ACIAD RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|49529926|emb|CAG67638.1| NADH dehydrogenase I chain B [Acinetobacter sp. ADP1]
          Length = 225

 Score =  203 bits (517), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 80/181 (44%), Positives = 110/181 (60%), Gaps = 11/181 (6%)

Query: 3   LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQL----VTWARTGSLMWM 58
           LT  N       +   L++       +  E+ +K   +T ++ +    V W R  S+   
Sbjct: 5   LTRANP----DANQYPLQERQVVNDPLQEEV-NKNVFMTRLEDVLHNVVNWGRKNSVWPF 59

Query: 59  TFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQM 117
            FG +CC VE        +DL RFG    RASPRQ+D+MIVAGT   KMA  ++R+Y+QM
Sbjct: 60  NFGTSCCYVEYATTLTGVHDLSRFGAEVIRASPRQADLMIVAGTCFVKMAPVIQRLYEQM 119

Query: 118 PEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
            EP++VISMG+CAN GG Y   YSVV+G D+I+PVD+YVPGCPP  EALI  ++LLQ +I
Sbjct: 120 LEPKWVISMGACANSGGMY-DIYSVVQGVDKIIPVDVYVPGCPPRPEALIQALMLLQDQI 178

Query: 178 R 178
           +
Sbjct: 179 Q 179


>gi|315605129|ref|ZP_07880180.1| NADH-quinone oxidoreductase subunit B [Actinomyces sp. oral taxon
           180 str. F0310]
 gi|315313165|gb|EFU61231.1| NADH-quinone oxidoreductase subunit B [Actinomyces sp. oral taxon
           180 str. F0310]
          Length = 184

 Score =  203 bits (517), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 81/151 (53%), Positives = 113/151 (74%), Gaps = 2/151 (1%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89
            E    G  +TSV++++  AR  S   +T GLACCA+EMM A  PR+D+ RFG    RAS
Sbjct: 4   EESLPAGIALTSVEKVLGLARKYSQWPVTMGLACCAIEMMAAGTPRFDMARFGLEVFRAS 63

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PR SD+MIV+G +++KMA  +RRVYD MPEP++VISMG+CA+ GG ++  Y+VV+GCD I
Sbjct: 64  PRHSDMMIVSGRVSHKMAPIIRRVYDSMPEPKWVISMGACASSGGVFNN-YAVVQGCDHI 122

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           VPVD+Y+PGCPP  EALI+ +L+L+++I + 
Sbjct: 123 VPVDVYLPGCPPRPEALIHAVLVLREQIGKE 153


>gi|295837078|ref|ZP_06824011.1| proton-translocating NADH-quinone oxidoreductase, B subunit
           [Streptomyces sp. SPB74]
 gi|197697185|gb|EDY44118.1| proton-translocating NADH-quinone oxidoreductase, B subunit
           [Streptomyces sp. SPB74]
          Length = 204

 Score =  203 bits (516), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 81/181 (44%), Positives = 113/181 (62%), Gaps = 10/181 (5%)

Query: 1   MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTF 60
           +  T V   +     +          SR++ +          +  ++ W R  SL    F
Sbjct: 6   VPTTAVPAPVDLPDPTAPPAGTTGVLSRLAPQ---------PMKVVLNWGRRYSLWVFNF 56

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPR-ASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119
           GLACCA+E + ASM R+D  R G  P    PRQ+D+M+V+GT+T+KMA A++R+Y+QMPE
Sbjct: 57  GLACCAIEFIAASMSRHDFIRLGVIPFAPGPRQADLMVVSGTVTDKMAPAVKRLYEQMPE 116

Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           P+YVIS G+C+N GG Y  SYSV +G D+I+PVD+YVPGCPP  EAL+ GIL LQ+KI +
Sbjct: 117 PKYVISFGACSNCGGPYWDSYSVTKGVDQIIPVDVYVPGCPPRPEALLQGILKLQEKIAK 176

Query: 180 V 180
            
Sbjct: 177 E 177


>gi|254283162|ref|ZP_04958130.1| NADH dehydrogenase i, b subunit [gamma proteobacterium NOR51-B]
 gi|219679365|gb|EED35714.1| NADH dehydrogenase i, b subunit [gamma proteobacterium NOR51-B]
          Length = 214

 Score =  203 bits (516), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 75/180 (41%), Positives = 111/180 (61%), Gaps = 11/180 (6%)

Query: 3   LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62
           LT     I +   + S++          +E   +  +   ++ L+ W R  SL    FGL
Sbjct: 5   LTRPEDTIATSPGTASVD---------MAEQIRRNVMFARLEDLIAWGRAHSLWPFNFGL 55

Query: 63  ACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPR 121
           +CC VEM  +   R+D+ RFG    RA+PRQ+D+M+++GT+  KMA  ++ +YDQ+ EPR
Sbjct: 56  SCCYVEMATSFTSRHDIARFGSEVIRATPRQADLMVISGTVFRKMAPVVQHLYDQLLEPR 115

Query: 122 YVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
           ++ISMGSCAN GG Y   YSVV+G D+ +PVD+YVPGCPP  EAL+ G+++LQ  I +  
Sbjct: 116 WIISMGSCANSGGMY-DIYSVVQGVDKFIPVDVYVPGCPPRPEALMQGLMMLQDAIGKER 174


>gi|326559970|gb|EGE10368.1| NADH dehydrogenase subunit B [Moraxella catarrhalis 46P47B1]
 gi|326567656|gb|EGE17764.1| NADH dehydrogenase subunit B [Moraxella catarrhalis 12P80B1]
 gi|326569465|gb|EGE19525.1| NADH dehydrogenase subunit B [Moraxella catarrhalis BC8]
 gi|326572775|gb|EGE22761.1| NADH dehydrogenase subunit B [Moraxella catarrhalis BC7]
          Length = 223

 Score =  203 bits (516), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 81/184 (44%), Positives = 103/184 (55%), Gaps = 11/184 (5%)

Query: 3   LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQL----VTWARTGSLMWM 58
           LT  NQ      +    ++       I+     K   +  +  L      W R  SL   
Sbjct: 5   LTKPNQ-----HTKQYPQQSREIIDDITQAEVDKNVFLGRLSDLTHNLANWGRKNSLWPF 59

Query: 59  TFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQM 117
            FG +CC VE        +DL RFG    RASPRQ+DVMIVAGT   KMA  + R+Y+QM
Sbjct: 60  NFGTSCCYVEYATTLTGVHDLSRFGAEVIRASPRQADVMIVAGTCFVKMAPVILRLYEQM 119

Query: 118 PEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
            EP++VISMG+CAN GG Y   YSVV+G D+I+PVD+YVPGCPP  EALI  ++LLQ  I
Sbjct: 120 LEPKWVISMGACANSGGMY-DIYSVVQGVDKILPVDVYVPGCPPRPEALIQALMLLQNSI 178

Query: 178 RRVG 181
           +   
Sbjct: 179 QEER 182


>gi|229821708|ref|YP_002883234.1| NADH-quinone oxidoreductase, B subunit [Beutenbergia cavernae DSM
           12333]
 gi|259514655|sp|C5C0S6|NUOB_BEUC1 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|229567621|gb|ACQ81472.1| NADH-quinone oxidoreductase, B subunit [Beutenbergia cavernae DSM
           12333]
          Length = 184

 Score =  203 bits (516), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 78/149 (52%), Positives = 104/149 (69%), Gaps = 2/149 (1%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89
            E    GF++  V  LV   R  SL  +T GLACCA+EMM    PR+D+ RFG    RAS
Sbjct: 4   EEKAPSGFMLAKVSDLVGLIRKSSLWPVTMGLACCAIEMMATGTPRFDISRFGMEVFRAS 63

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQ+D+MIV+G ++ KMA  +R+VYDQM EP++V+SMG CA+ GG ++  Y+VV+G D I
Sbjct: 64  PRQADLMIVSGRVSQKMAPVVRQVYDQMSEPKWVLSMGVCASSGGMFNN-YAVVQGVDHI 122

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           +PVDIY+PGCPP  E L+  IL L ++IR
Sbjct: 123 LPVDIYLPGCPPRPEMLLNAILELHEQIR 151


>gi|326474729|gb|EGD98738.1| NADH-ubiquinone oxidoreductase subunit B [Trichophyton tonsurans
           CBS 112818]
          Length = 204

 Score =  203 bits (516), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 99/184 (53%), Positives = 116/184 (63%), Gaps = 18/184 (9%)

Query: 4   TTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFL---VTSVDQLVTWARTGSLMWMTF 60
           T  +  + S   S    K   +   + S+   +G L   +T++DQ+  WAR GSL  MTF
Sbjct: 31  TEQSSALQSTAGSVPARKPRREVP-LPSQEKPQGVLDYALTTLDQVANWARQGSLWPMTF 89

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           GLACCAVEMM  S PRYD +R G   RASPRQSDVMIVAGTLTNKMA ALR+VYDQMP P
Sbjct: 90  GLACCAVEMMHLSTPRYDQDRLGIIFRASPRQSDVMIVAGTLTNKMAPALRQVYDQMPGP 149

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
                              YSV RGCDRIVPVDIYVPGCPPT+EAL+YGI  LQ+K+R  
Sbjct: 150 TL--------------GDYYSVTRGCDRIVPVDIYVPGCPPTSEALMYGIFQLQRKMRNT 195

Query: 181 GNVK 184
              +
Sbjct: 196 KITR 199


>gi|261885026|ref|ZP_06009065.1| NADH-quinone oxidoreductase chain b [Campylobacter fetus subsp.
           venerealis str. Azul-94]
          Length = 168

 Score =  203 bits (516), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 69/151 (45%), Positives = 99/151 (65%), Gaps = 2/151 (1%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RAS 89
             +     ++T +D L  W R  SL  M FG ACCA+E M A   ++DL RF     R S
Sbjct: 4   ENLVQNDVVLTRLDALFNWGRKNSLWPMIFGTACCAIEFMSAVSSKHDLSRFEAEVMRFS 63

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQ+D+MI+AGT++ K A  L+ +YDQM EP++V+SMG+CA  GG ++ +Y+ ++G D+I
Sbjct: 64  PRQADLMIIAGTISFKQAPILKEIYDQMCEPKWVVSMGACACSGG-FYDNYTTLQGIDQI 122

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           +PVD+Y+ GCPP  EA+I  IL +Q KI   
Sbjct: 123 IPVDVYISGCPPRPEAIIDAILAIQDKISNE 153


>gi|256390056|ref|YP_003111620.1| NADH-quinone oxidoreductase subunit beta [Catenulispora acidiphila
           DSM 44928]
 gi|256356282|gb|ACU69779.1| NADH-quinone oxidoreductase, B subunit [Catenulispora acidiphila
           DSM 44928]
          Length = 291

 Score =  203 bits (516), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 74/133 (55%), Positives = 99/133 (74%), Gaps = 1/133 (0%)

Query: 46  LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR-ASPRQSDVMIVAGTLTN 104
           ++ W R  SL    FGLACCA+E +  SM R+D  R G  P    PRQ+D+M+V+GT+++
Sbjct: 41  VLNWGRRYSLWVFNFGLACCAIEFIATSMARHDFIRLGVIPFAPGPRQADLMVVSGTVSD 100

Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164
           KMA A++R+YDQMPEP+YVIS GSC+N GG Y  SY V +G D+++PVD+YVPGCPP  E
Sbjct: 101 KMAPAVKRLYDQMPEPKYVISFGSCSNCGGPYWDSYCVTKGVDQVIPVDVYVPGCPPRPE 160

Query: 165 ALIYGILLLQKKI 177
           AL+ GI+ LQ+KI
Sbjct: 161 ALLQGIIKLQEKI 173


>gi|188533348|ref|YP_001907145.1| NADH dehydrogenase subunit B [Erwinia tasmaniensis Et1/99]
 gi|238065142|sp|B2VIV4|NUOB_ERWT9 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|188028390|emb|CAO96251.1| NADH dehydrogenase I chain B [Erwinia tasmaniensis Et1/99]
          Length = 224

 Score =  203 bits (516), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 76/172 (44%), Positives = 104/172 (60%), Gaps = 5/172 (2%)

Query: 14  QSSCSLEKVDADFSRISSEITHK---GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMM 70
                L+K +     +   +      G L  ++  +V W R  SL    FGL+CC VEM 
Sbjct: 14  NDRYPLQKQEIVTDPLEKHVYQNVYMGKLEHALHDMVNWGRKNSLWPFNFGLSCCYVEMT 73

Query: 71  QASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSC 129
            +    +D+ RFG    RASPRQ+D M+VAGT   KMA  ++R+YDQM EP++VISMG+C
Sbjct: 74  TSFTAVHDVARFGSEVIRASPRQADFMVVAGTCFTKMAPVVQRLYDQMLEPKWVISMGAC 133

Query: 130 ANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
           AN GG Y   YSVV+G D+ +PVD+Y+PGCPP  EA +  +LLLQ+ I +  
Sbjct: 134 ANSGGMY-DIYSVVQGVDKFLPVDVYIPGCPPRPEAYMQALLLLQESIGKER 184


>gi|157371544|ref|YP_001479533.1| NADH dehydrogenase subunit B [Serratia proteamaculans 568]
 gi|238065214|sp|A8GH15|NUOB_SERP5 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|157323308|gb|ABV42405.1| NADH-quinone oxidoreductase, B subunit [Serratia proteamaculans
           568]
          Length = 224

 Score =  203 bits (516), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 76/181 (41%), Positives = 113/181 (62%), Gaps = 3/181 (1%)

Query: 3   LTTVNQKIISGQSSCSLEKVDAD-FSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFG 61
           LT ++    + +     ++V AD   +      + G L  ++  +V W R  S+    FG
Sbjct: 5   LTRIDPNGENDRYPLQKQEVVADPLDQQVHRTVYMGKLEHALHDMVNWGRKNSIWPYNFG 64

Query: 62  LACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           L+CC VEM+ +    +D+ RFG    RASPRQ+D+M+VAGT   KMA  ++R+Y+QM EP
Sbjct: 65  LSCCYVEMVTSFTAVHDVARFGAEVLRASPRQADLMVVAGTCFTKMAPVIQRLYEQMLEP 124

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           ++VISMG+CAN GG Y   YSVV+G D+ +PVD+Y+PGCPP  EA +  ++LLQ+ I + 
Sbjct: 125 KWVISMGACANSGGMY-DIYSVVQGVDKFLPVDVYIPGCPPRPEAYMQALMLLQESIGKE 183

Query: 181 G 181
            
Sbjct: 184 R 184


>gi|37526976|ref|NP_930320.1| NADH dehydrogenase subunit B [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|81572443|sp|Q7N2I8|NUOB_PHOLL RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|36786409|emb|CAE15462.1| NADH dehydrogenase I chain B (NADH-ubiquinone oxidoreductase chain
           2) (NUO2) [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 224

 Score =  203 bits (516), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 78/181 (43%), Positives = 111/181 (61%), Gaps = 3/181 (1%)

Query: 3   LTTVNQKIISGQSSCSLEKVDAD-FSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFG 61
           LT ++    + +     +++ AD   +      + G L  ++  +V W R  SL    FG
Sbjct: 5   LTRIDPNGENDRYPLQKQEIVADPLEQHVHRSVYMGKLEHALHDMVNWGRKNSLWPYNFG 64

Query: 62  LACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           L+CC VEM  +    +D+ RFG    RASPRQ+D M+VAGT   KMA  ++R+YDQM EP
Sbjct: 65  LSCCYVEMATSFTAVHDVARFGAEVLRASPRQADFMVVAGTCFTKMAPVIQRLYDQMLEP 124

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           ++VISMG+CAN GG Y   YSVV+G D+ +PVD+Y+PGCPP  EA +  +LLLQ+ I + 
Sbjct: 125 KWVISMGACANSGGMY-DIYSVVQGVDKFIPVDVYIPGCPPRPEAYMQALLLLQESIGKE 183

Query: 181 G 181
            
Sbjct: 184 R 184


>gi|291451958|ref|ZP_06591348.1| NADH dehydrogenase subunit NuoB2 [Streptomyces albus J1074]
 gi|291354907|gb|EFE81809.1| NADH dehydrogenase subunit NuoB2 [Streptomyces albus J1074]
          Length = 214

 Score =  203 bits (516), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 77/136 (56%), Positives = 102/136 (75%), Gaps = 1/136 (0%)

Query: 46  LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR-ASPRQSDVMIVAGTLTN 104
           ++ W R  SL    FGLACCA+E + ASM R+D  R G  P    PRQ+D+M+V+GT+T+
Sbjct: 39  VLNWGRRYSLWVFNFGLACCAIEFIAASMARHDFMRLGVIPFAPGPRQADLMVVSGTVTD 98

Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164
           KMA A++R+Y+QMPEP+YVIS G+C+N GG Y  SYSV +G D+I+PVD+YVPGCPP  E
Sbjct: 99  KMAPAVKRLYEQMPEPKYVISFGACSNCGGPYWDSYSVTKGVDQIIPVDVYVPGCPPRPE 158

Query: 165 ALIYGILLLQKKIRRV 180
           AL+ GI+ LQ+KI R 
Sbjct: 159 ALLQGIIKLQEKIARE 174


>gi|270262813|ref|ZP_06191084.1| NADH-quinone oxidoreductase subunit B [Serratia odorifera 4Rx13]
 gi|270043497|gb|EFA16590.1| NADH-quinone oxidoreductase subunit B [Serratia odorifera 4Rx13]
          Length = 224

 Score =  203 bits (516), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 75/181 (41%), Positives = 113/181 (62%), Gaps = 3/181 (1%)

Query: 3   LTTVNQKIISGQSSCSLEKVDAD-FSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFG 61
           LT ++    + +     +++ AD   +      + G L  ++  +V W R  S+    FG
Sbjct: 5   LTRIDPNGENDRYPLQKQEIVADPLDQQVHRTVYMGKLEHALHDMVNWGRKNSIWPYNFG 64

Query: 62  LACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           L+CC VEM+ +    +D+ RFG    RASPRQ+D+M+VAGT   KMA  ++R+Y+QM EP
Sbjct: 65  LSCCYVEMVTSFTAVHDVARFGAEVLRASPRQADLMVVAGTCFTKMAPVIQRLYEQMLEP 124

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           ++VISMG+CAN GG Y   YSVV+G D+ +PVD+Y+PGCPP  EA +  ++LLQ+ I + 
Sbjct: 125 KWVISMGACANSGGMY-DIYSVVQGVDKFLPVDVYIPGCPPRPEAYMQALMLLQESIGKE 183

Query: 181 G 181
            
Sbjct: 184 R 184


>gi|239980104|ref|ZP_04702628.1| NADH dehydrogenase subunit NuoB2 [Streptomyces albus J1074]
          Length = 216

 Score =  203 bits (516), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 77/136 (56%), Positives = 102/136 (75%), Gaps = 1/136 (0%)

Query: 46  LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR-ASPRQSDVMIVAGTLTN 104
           ++ W R  SL    FGLACCA+E + ASM R+D  R G  P    PRQ+D+M+V+GT+T+
Sbjct: 41  VLNWGRRYSLWVFNFGLACCAIEFIAASMARHDFMRLGVIPFAPGPRQADLMVVSGTVTD 100

Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164
           KMA A++R+Y+QMPEP+YVIS G+C+N GG Y  SYSV +G D+I+PVD+YVPGCPP  E
Sbjct: 101 KMAPAVKRLYEQMPEPKYVISFGACSNCGGPYWDSYSVTKGVDQIIPVDVYVPGCPPRPE 160

Query: 165 ALIYGILLLQKKIRRV 180
           AL+ GI+ LQ+KI R 
Sbjct: 161 ALLQGIIKLQEKIARE 176


>gi|226953551|ref|ZP_03824015.1| NADH dehydrogenase I subunit B [Acinetobacter sp. ATCC 27244]
 gi|294649461|ref|ZP_06726885.1| NADH-quinone oxidoreductase subunit B [Acinetobacter haemolyticus
           ATCC 19194]
 gi|226835729|gb|EEH68112.1| NADH dehydrogenase I subunit B [Acinetobacter sp. ATCC 27244]
 gi|292824631|gb|EFF83410.1| NADH-quinone oxidoreductase subunit B [Acinetobacter haemolyticus
           ATCC 19194]
          Length = 225

 Score =  203 bits (516), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 80/181 (44%), Positives = 109/181 (60%), Gaps = 11/181 (6%)

Query: 3   LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQL----VTWARTGSLMWM 58
           LT  N           L+        +  E+ +K  ++T ++ +    V W R  SL   
Sbjct: 5   LTRANP----DADQYPLQDRQIVTDPLEEEV-NKSVMMTRLEDVLHTAVNWGRKNSLWPF 59

Query: 59  TFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQM 117
            FG +CC VE        +DL RFG    RASPRQ+D+MIVAGT   KMA  ++R+Y+QM
Sbjct: 60  NFGTSCCYVEYATTLTGVHDLSRFGAEVIRASPRQADLMIVAGTCFVKMAPVIQRLYEQM 119

Query: 118 PEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
            EP++VISMG+CAN GG Y   YSVV+G D+I+PVD+Y+PGCPP  EALI  ++LLQ +I
Sbjct: 120 LEPKWVISMGACANSGGMY-DIYSVVQGVDKIIPVDVYIPGCPPRPEALIQALMLLQDQI 178

Query: 178 R 178
           +
Sbjct: 179 Q 179


>gi|292488843|ref|YP_003531730.1| NADH dehydrogenase I subunit B [Erwinia amylovora CFBP1430]
 gi|292899993|ref|YP_003539362.1| NADH dehydrogenase I chain B [Erwinia amylovora ATCC 49946]
 gi|291199841|emb|CBJ46965.1| NADH dehydrogenase I chain B [Erwinia amylovora ATCC 49946]
 gi|291554277|emb|CBA21599.1| NADH dehydrogenase I chain B [Erwinia amylovora CFBP1430]
 gi|312173002|emb|CBX81257.1| NADH dehydrogenase I chain B [Erwinia amylovora ATCC BAA-2158]
          Length = 224

 Score =  203 bits (516), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 76/163 (46%), Positives = 103/163 (63%), Gaps = 2/163 (1%)

Query: 20  EKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDL 79
           E V     +   +  + G L  ++  +V W R  SL    FGL+CC VEM  +    +D+
Sbjct: 23  EIVTDPLEKHVHQNVYMGKLEHALHDMVNWGRKNSLWPFNFGLSCCYVEMTTSFTAVHDV 82

Query: 80  ERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY 138
            RFG    RASPRQ+D M+VAGT   KMA  ++R+YDQM EP++VISMG+CAN GG Y  
Sbjct: 83  ARFGSEVIRASPRQADFMVVAGTCFTKMAPVIQRLYDQMLEPKWVISMGACANSGGMY-D 141

Query: 139 SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
            YSVV+G D+ +PVD+Y+PGCPP  EA +  +LLLQ+ I +  
Sbjct: 142 IYSVVQGVDKFLPVDVYIPGCPPRPEAYMQALLLLQESIGKER 184


>gi|158339661|ref|YP_001520668.1| NADH dehydrogenase subunit B [Acaryochloris marina MBIC11017]
 gi|218527877|sp|A8ZK18|NDHK2_ACAM1 RecName: Full=NAD(P)H-quinone oxidoreductase subunit K 2; AltName:
           Full=NAD(P)H dehydrogenase I subunit K 2; AltName:
           Full=NDH-1 subunit K 2; Short=NDH-K 2
 gi|158309902|gb|ABW31518.1| proton-translocating NAD(P)H-quinone oxidoreductase, chain B,
           putative [Acaryochloris marina MBIC11017]
          Length = 209

 Score =  203 bits (516), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 74/151 (49%), Positives = 106/151 (70%), Gaps = 2/151 (1%)

Query: 28  RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
            ++ E++    ++T++D L  W +  SL    FG ACC +E M A   R+D+ERFG  PR
Sbjct: 18  EVTQELSD-NVILTALDDLYDWVKMSSLYPFMFGTACCFMEFMGAYASRFDMERFGMIPR 76

Query: 88  ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146
           A+PRQ+D++I AGT+T K A AL R+Y+QMPEP+YV++MG+C   GG +   S S VRG 
Sbjct: 77  ATPRQADLLITAGTITMKYAPALVRLYEQMPEPKYVMAMGACTITGGMFSADSPSAVRGV 136

Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
           D+++PVD+Y+PGCPP AEA++  I  L+KKI
Sbjct: 137 DKLIPVDVYIPGCPPRAEAVLDAITKLRKKI 167


>gi|157736575|ref|YP_001489258.1| NADH-quinone oxidoreductase, B subunit [Arcobacter butzleri RM4018]
 gi|315635738|ref|ZP_07891001.1| NADH-quinone oxidoreductase subunit B [Arcobacter butzleri JV22]
 gi|238065055|sp|A8ERL5|NUOB_ARCB4 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|157698429|gb|ABV66589.1| NADH-quinone oxidoreductase, B subunit [Arcobacter butzleri RM4018]
 gi|315480035|gb|EFU70705.1| NADH-quinone oxidoreductase subunit B [Arcobacter butzleri JV22]
          Length = 171

 Score =  203 bits (516), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 68/155 (43%), Positives = 100/155 (64%), Gaps = 2/155 (1%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89
                   + T +D  V W R+ SL  M FG ACC +E M  +  +YD+ RFG    R S
Sbjct: 6   ESKLGDSIVTTRLDHAVNWGRSYSLWPMAFGTACCGIEFMAVAGAKYDVSRFGAEVVRFS 65

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQ+D++IVAGT++ K A  L+++Y+QM EP++VISMG+CA  GG ++ +Y+ V+G D I
Sbjct: 66  PRQADLLIVAGTISYKQAPILKKIYEQMCEPKWVISMGACACSGG-FYDNYTTVQGIDEI 124

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           +PVD YV GCPP  EA++  I+ +Q+K +    +K
Sbjct: 125 IPVDEYVAGCPPRPEAVLDAIMRIQEKAKTESIIK 159


>gi|167044398|gb|ABZ09075.1| putative NADH ubiquinone oxidoreductase, 20 Kd subunit [uncultured
           marine crenarchaeote HF4000_APKG6D3]
          Length = 185

 Score =  203 bits (516), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 76/145 (52%), Positives = 97/145 (66%), Gaps = 1/145 (0%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVM 96
            +   +   + W R  SL  +    ACC+VE   AS PRYD+ERFG      S RQ D++
Sbjct: 39  VVDKPLGMAINWGRLWSLWPVHIETACCSVEFGAASGPRYDVERFGIIEAFGSLRQCDLV 98

Query: 97  IVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV 156
           +V GT+T KMA  LR VYDQMPEP+YVI+MG+CA  GG Y  SY+V+ G D I+PVD+YV
Sbjct: 99  VVQGTITRKMAPRLRLVYDQMPEPKYVIAMGACAITGGLYFDSYNVLPGIDGILPVDVYV 158

Query: 157 PGCPPTAEALIYGILLLQKKIRRVG 181
           PGCPP  E LI G +LLQ+KI+R+ 
Sbjct: 159 PGCPPRPETLIQGCILLQEKIKRMK 183


>gi|116515039|ref|YP_802668.1| NADH dehydrogenase subunit B [Buchnera aphidicola str. Cc (Cinara
           cedri)]
 gi|122285565|sp|Q057X4|NUOB_BUCCC RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|116256893|gb|ABJ90575.1| NADH dehydrogenase I chain B [Buchnera aphidicola str. Cc (Cinara
           cedri)]
          Length = 225

 Score =  202 bits (515), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 83/182 (45%), Positives = 107/182 (58%), Gaps = 4/182 (2%)

Query: 3   LTTVNQK--IISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTF 60
           LT VN K  I       SL+K      +        G +   +  ++ W R  SL    F
Sbjct: 5   LTRVNTKNSISKKYPLRSLKKTSDPIKKQIKNNIFFGTISKYMQYIMNWGRKNSLWPYNF 64

Query: 61  GLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119
           GL+CC VEM+ A    +D+ RFG    R SPRQ+D M++AGT   KMA  ++R+YD M E
Sbjct: 65  GLSCCYVEMVSAFTSIHDISRFGSEVLRTSPRQADFMVIAGTPFIKMAPVIQRLYDLMLE 124

Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           P++VISMGSCAN GG Y   YSVV+G D+ +PVDIY+PGCPP  EA I+ I LLQK I +
Sbjct: 125 PKWVISMGSCANSGGMY-DIYSVVQGVDKFLPVDIYIPGCPPRPEAYIHAITLLQKAISK 183

Query: 180 VG 181
             
Sbjct: 184 ER 185


>gi|28870530|ref|NP_793149.1| NADH dehydrogenase I subunit B [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|71737615|ref|YP_275280.1| NADH dehydrogenase subunit B [Pseudomonas syringae pv. phaseolicola
           1448A]
 gi|213970034|ref|ZP_03398166.1| NADH dehydrogenase subunit B [Pseudomonas syringae pv. tomato T1]
 gi|237800544|ref|ZP_04589005.1| NADH dehydrogenase subunit B [Pseudomonas syringae pv. oryzae str.
           1_6]
 gi|257485440|ref|ZP_05639481.1| NADH dehydrogenase subunit B [Pseudomonas syringae pv. tabaci ATCC
           11528]
 gi|289625427|ref|ZP_06458381.1| NADH dehydrogenase subunit B [Pseudomonas syringae pv. aesculi str.
           NCPPB3681]
 gi|289649290|ref|ZP_06480633.1| NADH dehydrogenase subunit B [Pseudomonas syringae pv. aesculi str.
           2250]
 gi|289679197|ref|ZP_06500087.1| NADH dehydrogenase subunit B [Pseudomonas syringae pv. syringae
           FF5]
 gi|298487549|ref|ZP_07005591.1| NADH-ubiquinone oxidoreductase chain B [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|301381389|ref|ZP_07229807.1| NADH dehydrogenase subunit B [Pseudomonas syringae pv. tomato
           Max13]
 gi|302062160|ref|ZP_07253701.1| NADH dehydrogenase subunit B [Pseudomonas syringae pv. tomato K40]
 gi|302130363|ref|ZP_07256353.1| NADH dehydrogenase subunit B [Pseudomonas syringae pv. tomato NCPPB
           1108]
 gi|302185024|ref|ZP_07261697.1| NADH dehydrogenase subunit B [Pseudomonas syringae pv. syringae
           642]
 gi|81730555|sp|Q87ZQ8|NUOB_PSESM RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|123635950|sp|Q48H53|NUOB_PSE14 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|28853778|gb|AAO56844.1| NADH dehydrogenase I, B subunit [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|71558168|gb|AAZ37379.1| NADH-quinone oxidoreductase, B subunit [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|213925138|gb|EEB58701.1| NADH dehydrogenase subunit B [Pseudomonas syringae pv. tomato T1]
 gi|298157933|gb|EFH99011.1| NADH-ubiquinone oxidoreductase chain B [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|320323789|gb|EFW79873.1| NADH dehydrogenase subunit B [Pseudomonas syringae pv. glycinea
           str. B076]
 gi|320327928|gb|EFW83933.1| NADH dehydrogenase subunit B [Pseudomonas syringae pv. glycinea
           str. race 4]
 gi|330866837|gb|EGH01546.1| NADH dehydrogenase subunit B [Pseudomonas syringae pv. aesculi str.
           0893_23]
 gi|330875772|gb|EGH09921.1| NADH dehydrogenase subunit B [Pseudomonas syringae pv. morsprunorum
           str. M302280PT]
 gi|330889659|gb|EGH22320.1| NADH dehydrogenase subunit B [Pseudomonas syringae pv. mori str.
           301020]
 gi|330900626|gb|EGH32045.1| NADH dehydrogenase subunit B [Pseudomonas syringae pv. japonica
           str. M301072PT]
 gi|330940383|gb|EGH43487.1| NADH dehydrogenase subunit B [Pseudomonas syringae pv. pisi str.
           1704B]
 gi|330954562|gb|EGH54822.1| NADH dehydrogenase subunit B [Pseudomonas syringae Cit 7]
 gi|330965590|gb|EGH65850.1| NADH dehydrogenase subunit B [Pseudomonas syringae pv. actinidiae
           str. M302091]
 gi|330981370|gb|EGH79473.1| NADH dehydrogenase subunit B [Pseudomonas syringae pv. aptata str.
           DSM 50252]
 gi|330987943|gb|EGH86046.1| NADH dehydrogenase subunit B [Pseudomonas syringae pv. lachrymans
           str. M301315]
 gi|331010726|gb|EGH90782.1| NADH dehydrogenase subunit B [Pseudomonas syringae pv. tabaci ATCC
           11528]
 gi|331017272|gb|EGH97328.1| NADH dehydrogenase subunit B [Pseudomonas syringae pv. lachrymans
           str. M302278PT]
 gi|331023404|gb|EGI03461.1| NADH dehydrogenase subunit B [Pseudomonas syringae pv. oryzae str.
           1_6]
          Length = 224

 Score =  202 bits (515), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 76/175 (43%), Positives = 107/175 (61%), Gaps = 7/175 (4%)

Query: 12  SGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQL----VTWARTGSLMWMTFGLACCAV 67
           +      + K +     +  ++ HK   +  ++ +    V W R  SL    FGL+CC V
Sbjct: 12  APNEQYPIGKRETVSDPLEDQV-HKNIYMGKLEDVLNGAVNWGRKNSLWPYNFGLSCCYV 70

Query: 68  EMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISM 126
           EM  A    +D+ RFG    RASPRQ+D M++AGT   KMA  ++R+Y+QM EP++VISM
Sbjct: 71  EMTTAFTAPHDIARFGAEVIRASPRQADFMVIAGTCFIKMAPIIQRLYEQMLEPKWVISM 130

Query: 127 GSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
           GSCAN GG Y   YSVV+G D+ +PVD+YVPGCPP  EA + G++LLQ+ I +  
Sbjct: 131 GSCANSGGMY-DIYSVVQGVDKFLPVDVYVPGCPPRPEAFLQGLMLLQESIGKER 184


>gi|159036128|ref|YP_001535381.1| NADH-quinone oxidoreductase, B subunit [Salinispora arenicola
           CNS-205]
 gi|238065019|sp|A8M069|NUOB1_SALAI RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName:
           Full=NADH dehydrogenase I subunit B 1; AltName:
           Full=NDH-1 subunit B 1
 gi|157914963|gb|ABV96390.1| NADH-quinone oxidoreductase, B subunit [Salinispora arenicola
           CNS-205]
          Length = 188

 Score =  202 bits (515), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 78/137 (56%), Positives = 103/137 (75%), Gaps = 1/137 (0%)

Query: 46  LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS-PRQSDVMIVAGTLTN 104
           ++ W R  SL    FGLACCA+E +  SM R+D  R G  P A  PRQ+D+M+V+GT+T+
Sbjct: 14  VLNWGRRYSLWVFNFGLACCAIEFIATSMSRHDFMRLGVIPFAHGPRQADLMVVSGTVTD 73

Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164
           KMA A++R+YDQMPEP+YVIS G+C+N GG Y  SYSV +G D+++PVD+YVPGCPP  E
Sbjct: 74  KMAPAIKRLYDQMPEPKYVISFGACSNCGGPYWDSYSVTKGVDQLIPVDVYVPGCPPRPE 133

Query: 165 ALIYGILLLQKKIRRVG 181
           AL++GIL LQ+KI   G
Sbjct: 134 ALLHGILRLQEKIAAEG 150


>gi|262373374|ref|ZP_06066653.1| trifunctional NADH dehydrogenase I subunit B/C/D [Acinetobacter
           junii SH205]
 gi|262313399|gb|EEY94484.1| trifunctional NADH dehydrogenase I subunit B/C/D [Acinetobacter
           junii SH205]
          Length = 225

 Score =  202 bits (515), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 80/181 (44%), Positives = 109/181 (60%), Gaps = 11/181 (6%)

Query: 3   LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQL----VTWARTGSLMWM 58
           LT  N           L+        +  E+ +K  ++T ++ +    V W R  SL   
Sbjct: 5   LTRANP----DADQYPLQDRQIVTDPLEEEV-NKSVMMTRLEDVLHTAVNWGRKNSLWPF 59

Query: 59  TFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQM 117
            FG +CC VE        +DL RFG    RASPRQ+D+MIVAGT   KMA  ++R+Y+QM
Sbjct: 60  NFGTSCCYVEYATTLTGVHDLSRFGAEVIRASPRQADLMIVAGTCFVKMAPVIQRLYEQM 119

Query: 118 PEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
            EP++VISMG+CAN GG Y   YSVV+G D+I+PVD+Y+PGCPP  EALI  ++LLQ +I
Sbjct: 120 LEPKWVISMGACANSGGMY-DIYSVVQGVDKIIPVDVYIPGCPPRPEALIQALMLLQDQI 178

Query: 178 R 178
           +
Sbjct: 179 Q 179


>gi|66046427|ref|YP_236268.1| NADH dehydrogenase subunit B [Pseudomonas syringae pv. syringae
           B728a]
 gi|75501522|sp|Q4ZRJ2|NUOB_PSEU2 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|63257134|gb|AAY38230.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit [Pseudomonas
           syringae pv. syringae B728a]
 gi|330972908|gb|EGH72974.1| NADH dehydrogenase subunit B [Pseudomonas syringae pv. aceris str.
           M302273PT]
          Length = 224

 Score =  202 bits (515), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 76/175 (43%), Positives = 107/175 (61%), Gaps = 7/175 (4%)

Query: 12  SGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQL----VTWARTGSLMWMTFGLACCAV 67
           +      + K +     +  ++ HK   +  ++ +    V W R  SL    FGL+CC V
Sbjct: 12  APNEQYPIGKRETVSDPLEDQV-HKNIYMGKLEDVLSGAVNWGRKNSLWPYNFGLSCCYV 70

Query: 68  EMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISM 126
           EM  A    +D+ RFG    RASPRQ+D M++AGT   KMA  ++R+Y+QM EP++VISM
Sbjct: 71  EMTTAFTAPHDIARFGAEVIRASPRQADFMVIAGTCFIKMAPIIQRLYEQMLEPKWVISM 130

Query: 127 GSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
           GSCAN GG Y   YSVV+G D+ +PVD+YVPGCPP  EA + G++LLQ+ I +  
Sbjct: 131 GSCANSGGMY-DIYSVVQGVDKFLPVDVYVPGCPPRPEAFLQGLMLLQESIGKER 184


>gi|167740356|ref|ZP_02413130.1| NADH dehydrogenase subunit B [Burkholderia pseudomallei 14]
 gi|167817572|ref|ZP_02449252.1| NADH dehydrogenase subunit B [Burkholderia pseudomallei 91]
 gi|167825975|ref|ZP_02457446.1| NADH dehydrogenase subunit B [Burkholderia pseudomallei 9]
 gi|167896050|ref|ZP_02483452.1| NADH dehydrogenase subunit B [Burkholderia pseudomallei 7894]
 gi|167912696|ref|ZP_02499787.1| NADH dehydrogenase subunit B [Burkholderia pseudomallei 112]
 gi|167920662|ref|ZP_02507753.1| NADH dehydrogenase subunit B [Burkholderia pseudomallei BCC215]
 gi|226192982|ref|ZP_03788593.1| putative NADH-quinone oxidoreductase, B subunit [Burkholderia
           pseudomallei Pakistan 9]
 gi|237813963|ref|YP_002898414.1| NADH-quinone oxidoreductase subunit b (NADH dehydrogenase i subunit
           b) (ndh-1 subunit b) [Burkholderia pseudomallei MSHR346]
 gi|225934952|gb|EEH30928.1| putative NADH-quinone oxidoreductase, B subunit [Burkholderia
           pseudomallei Pakistan 9]
 gi|237506107|gb|ACQ98425.1| NADH-quinone oxidoreductase subunit b (NADH dehydrogenase i subunit
           b) (ndh-1 subunit b) [Burkholderia pseudomallei MSHR346]
          Length = 167

 Score =  202 bits (515), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 106/151 (70%), Positives = 125/151 (82%)

Query: 32  EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPR 91
            +   GF+VT++D  +  A+  SL +MTFGLACCAVEMM A+  RYD++RFG  PRASPR
Sbjct: 7   TLEKDGFIVTTLDAAMAAAQKNSLWYMTFGLACCAVEMMHAAGARYDMDRFGMIPRASPR 66

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
           Q D+MIVAGTLTNKMA A+RRVYDQM EPRYV+SMGSCANGGGYYHY YSVVRGCDRIVP
Sbjct: 67  QCDLMIVAGTLTNKMAPAMRRVYDQMAEPRYVVSMGSCANGGGYYHYGYSVVRGCDRIVP 126

Query: 152 VDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
           VD+YVPGCPPTAEAL+YG++ LQ+K+     
Sbjct: 127 VDVYVPGCPPTAEALVYGLMQLQRKVAERST 157


>gi|118576844|ref|YP_876587.1| NADH-ubiquinone oxidoreductase, subunit B [Cenarchaeum symbiosum A]
 gi|118195365|gb|ABK78283.1| NADH-ubiquinone oxidoreductase, subunit B [Cenarchaeum symbiosum A]
          Length = 160

 Score =  202 bits (515), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 77/152 (50%), Positives = 101/152 (66%), Gaps = 5/152 (3%)

Query: 38  FLVTSVDQ----LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQ 92
            L  ++D+     + W R  SL  +    ACC+VE   AS P+YD+ERFG      S RQ
Sbjct: 7   ILEKAIDKPLGYAINWGRIWSLWPVHIETACCSVEFGAASGPKYDVERFGIIEAFGSLRQ 66

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
            D+++V GT+T KMA  LR VYDQMPEP+YVI+MG+CA  GG Y  SY+V+ G D ++PV
Sbjct: 67  CDLIVVQGTITRKMAPRLRLVYDQMPEPKYVIAMGACAITGGLYFDSYNVLPGIDGVLPV 126

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           D+YVPGCPP  E LI G +LLQ+KI+R+   K
Sbjct: 127 DVYVPGCPPRPETLIQGCMLLQEKIKRMRARK 158


>gi|116749375|ref|YP_846062.1| trifunctional NADH dehydrogenase I subunit B/C/D [Syntrophobacter
           fumaroxidans MPOB]
 gi|218534237|sp|A0LJM5|NUBCD_SYNFM RecName: Full=NADH-quinone oxidoreductase subunit B/C/D; AltName:
           Full=NADH dehydrogenase I subunit B/C/D; AltName:
           Full=NDH-1 subunit B/C/D
 gi|116698439|gb|ABK17627.1| NADH dehydrogenase I, D subunit [Syntrophobacter fumaroxidans MPOB]
          Length = 787

 Score =  202 bits (515), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 74/140 (52%), Positives = 103/140 (73%), Gaps = 2/140 (1%)

Query: 39  LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMI 97
            +++ D ++ W+R  SL  + FGL+CC VE   A  PRYD+ RFG    R SPRQ+D++I
Sbjct: 5   FLSAADFVLNWSRKYSLWPLFFGLSCCFVEEATAFTPRYDMARFGAEVLRPSPRQADLLI 64

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           V+GT+  K+A  + R+Y+QM EP++VISMGSC+N GG Y   YSVV+G D+I+PVD+Y+P
Sbjct: 65  VSGTVFKKIAPVVLRLYEQMAEPKWVISMGSCSNCGGMY-DVYSVVQGIDQILPVDVYIP 123

Query: 158 GCPPTAEALIYGILLLQKKI 177
           GCPP  EA++ G+ LLQKKI
Sbjct: 124 GCPPRPEAVLQGLTLLQKKI 143


>gi|323702663|ref|ZP_08114324.1| NADH-quinone oxidoreductase, B subunit [Desulfotomaculum
           nigrificans DSM 574]
 gi|323532326|gb|EGB22204.1| NADH-quinone oxidoreductase, B subunit [Desulfotomaculum
           nigrificans DSM 574]
          Length = 203

 Score =  202 bits (515), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 87/186 (46%), Positives = 124/186 (66%), Gaps = 6/186 (3%)

Query: 1   MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTF 60
           +G   V++  +  ++   L+K+ AD + I      K   V  +++L+  AR  SL  + F
Sbjct: 20  VGNPPVDE--MQEETIRRLKKIGADPAVIGE--VTKTVSVGPLEKLLNLARANSLWPLGF 75

Query: 61  GLACCAVE-MMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMP 118
           GLACCA+E +M A+M R+DL RFG+   RASPRQ+DVMIV GT+T K A  + R+Y+QM 
Sbjct: 76  GLACCAIEGLMAANMARFDLSRFGYEVMRASPRQADVMIVCGTVTKKAAPFVVRLYEQMA 135

Query: 119 EPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           EP+YVI+MGSCA  GG +  SY+VV G D+++PVD+Y+PGCPP  +ALI+  L L++KI 
Sbjct: 136 EPKYVIAMGSCAISGGPFVDSYAVVPGVDKLIPVDVYLPGCPPRPDALIHAFLKLKEKII 195

Query: 179 RVGNVK 184
               VK
Sbjct: 196 NPEVVK 201


>gi|213022740|ref|ZP_03337187.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
           serovar Typhi str. 404ty]
          Length = 184

 Score =  202 bits (515), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 75/169 (44%), Positives = 106/169 (62%), Gaps = 2/169 (1%)

Query: 14  QSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQAS 73
                L+K +     +  E+  K    T+   +V W R  S+    FGL+CC VEM+ + 
Sbjct: 14  NDRYPLQKQEIVTDPLEQEVKQKRVHGTNCMTVVNWGRKNSIWPYNFGLSCCYVEMVTSF 73

Query: 74  MPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANG 132
              +D+ RFG    RASPRQ+D+M+VAGT   KMA  ++R+YDQM EP++VISMG+CAN 
Sbjct: 74  TAVHDVARFGAEVLRASPRQADLMVVAGTCFTKMAPVIQRLYDQMLEPKWVISMGACANS 133

Query: 133 GGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
           GG Y   YSVV+G D+ +PVD+Y+PGCPP  EA +  ++LLQ+ I +  
Sbjct: 134 GGMY-DIYSVVQGVDKFIPVDVYIPGCPPRPEAYMQALMLLQESIGKER 181


>gi|318056637|ref|ZP_07975360.1| NADH dehydrogenase I chain B [Streptomyces sp. SA3_actG]
 gi|318080916|ref|ZP_07988248.1| NADH dehydrogenase I chain B [Streptomyces sp. SA3_actF]
          Length = 204

 Score =  202 bits (514), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 81/181 (44%), Positives = 112/181 (61%), Gaps = 10/181 (5%)

Query: 1   MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTF 60
           +  T V   +     +          SR++ +          +  ++ W R  SL    F
Sbjct: 6   VPTTAVPAPVDLPDPTAPPAGTTGVLSRLAPQ---------PMKVVLNWGRRYSLWVFNF 56

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPR-ASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119
           GLACCA+E + ASM R+D  R G  P    PRQ+D+M+V+GT+T+KMA A++R+Y+QMPE
Sbjct: 57  GLACCAIEFIAASMSRHDFIRLGVIPFAPGPRQADLMVVSGTVTDKMAPAVKRLYEQMPE 116

Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           P+YVIS G+C+N GG Y  SYSV +G D+I+PVD+YVPGCPP  EAL+ GIL LQ+KI  
Sbjct: 117 PKYVISFGACSNCGGPYWDSYSVTKGVDQIIPVDVYVPGCPPRPEALLQGILKLQEKIAH 176

Query: 180 V 180
            
Sbjct: 177 E 177


>gi|24213594|ref|NP_711075.1| NADH dehydrogenase (ubiquinone) chain B [Leptospira interrogans
           serovar Lai str. 56601]
 gi|45658576|ref|YP_002662.1| NADH dehydrogenase subunit B [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|81471022|sp|Q8F7Q0|NUOB_LEPIN RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|81567883|sp|Q72NT7|NUOB_LEPIC RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|24194386|gb|AAN48093.1| NADH dehydrogenase (ubiquinone) chain B [Leptospira interrogans
           serovar Lai str. 56601]
 gi|45601820|gb|AAS71299.1| NADH dehydrogenase I B subunit [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
          Length = 186

 Score =  202 bits (514), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 71/159 (44%), Positives = 106/159 (66%), Gaps = 2/159 (1%)

Query: 24  ADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFG 83
           +D S+   +       + +V+ ++ W R+ SL    F  ACC +E M  +   YD+ RFG
Sbjct: 4   SDLSKTPGQALGDMVQLGNVESVIQWGRSYSLWPYPFATACCGIEYMSTACSDYDIARFG 63

Query: 84  FA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142
              P  SPRQ+D+++V GT+T KMA  LR++YDQM EP++VIS+G+CA+ GG +H +Y V
Sbjct: 64  AERPSFSPRQADMILVLGTITYKMAPVLRQIYDQMAEPKFVISVGACASSGGMFH-TYGV 122

Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
           ++G DRI+PVD+YVPGCPP  EA++  +L LQ K++  G
Sbjct: 123 LQGVDRILPVDVYVPGCPPRPEAILDALLKLQTKLKTQG 161


>gi|300717650|ref|YP_003742453.1| NADH dehydrogenase I chain B [Erwinia billingiae Eb661]
 gi|299063486|emb|CAX60606.1| NADH dehydrogenase I chain B [Erwinia billingiae Eb661]
          Length = 224

 Score =  202 bits (514), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 76/172 (44%), Positives = 104/172 (60%), Gaps = 5/172 (2%)

Query: 14  QSSCSLEKVDADFSRISSEITHK---GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMM 70
                L+K +     +   +      G L  ++  +V W R  SL    FGL+CC VEM 
Sbjct: 14  NDRYPLQKQEIVTDPLEKHVHQNVYMGKLEHAMHDMVNWGRKNSLWPFNFGLSCCYVEMT 73

Query: 71  QASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSC 129
            +    +D+ RFG    RASPRQ+D M+VAGT   KMA  ++R+YDQM EP++VISMG+C
Sbjct: 74  TSFTSVHDVARFGSEVIRASPRQADFMVVAGTCFTKMAPVVQRLYDQMLEPKWVISMGAC 133

Query: 130 ANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
           AN GG Y   YSVV+G D+ +PVD+Y+PGCPP  EA +  +LLLQ+ I +  
Sbjct: 134 ANSGGMY-DIYSVVQGVDKFLPVDVYIPGCPPRPEAYMQALLLLQESIGKER 184


>gi|296274177|ref|YP_003656808.1| NADH-quinone oxidoreductase subunit B [Arcobacter nitrofigilis DSM
           7299]
 gi|296098351|gb|ADG94301.1| NADH-quinone oxidoreductase, B subunit [Arcobacter nitrofigilis DSM
           7299]
          Length = 171

 Score =  202 bits (514), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 69/155 (44%), Positives = 105/155 (67%), Gaps = 2/155 (1%)

Query: 30  SSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRA 88
           +  +     + T +D+ V WAR+ SL  M FG ACC +E M  +  +YD+ RFG    R 
Sbjct: 5   AESVLGDSVITTRLDKAVNWARSYSLWPMVFGTACCGIEFMSVAAAKYDISRFGAEVVRF 64

Query: 89  SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 148
           SPRQ+D++I+AGT+T K A  L+++YDQM EP++VISMG+CA+ GG ++ +Y+ ++G D+
Sbjct: 65  SPRQADLLIIAGTITYKQAPVLKKIYDQMCEPKWVISMGACASSGG-FYDNYTTLQGVDQ 123

Query: 149 IVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           I+PVD YV GCPP  EA++  I+ +QKK +    +
Sbjct: 124 IIPVDEYVSGCPPRPEAVLDAIISIQKKAQNESII 158


>gi|255019940|ref|ZP_05292014.1| NADH-ubiquinone oxidoreductase chain B [Acidithiobacillus caldus
           ATCC 51756]
 gi|254970599|gb|EET28087.1| NADH-ubiquinone oxidoreductase chain B [Acidithiobacillus caldus
           ATCC 51756]
          Length = 162

 Score =  202 bits (514), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 79/150 (52%), Positives = 106/150 (70%), Gaps = 2/150 (1%)

Query: 32  EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASP 90
           E      L   +D+L+ W+R GSL  + FG +CC +EM+ A  PR+D+ RFG    R+SP
Sbjct: 4   ERGPLSLLAGKLDELIAWSRAGSLWPLNFGTSCCFIEMVAAVTPRHDIARFGAEVLRSSP 63

Query: 91  RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150
           RQ+DV+I +GT+  KMA  +  +Y QM EP++VISMGSCAN GG Y   YSV++G D+I+
Sbjct: 64  RQADVLICSGTVFAKMAPMIVEIYAQMLEPKWVISMGSCANSGGMY-DVYSVIQGLDQIL 122

Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           PVD+YVPGCPP  EAL  G+LLLQ+KIR+ 
Sbjct: 123 PVDVYVPGCPPRPEALTDGLLLLQRKIRQR 152


>gi|146299005|ref|YP_001193596.1| NADH-quinone oxidoreductase, B subunit [Flavobacterium johnsoniae
           UW101]
 gi|238065144|sp|A5FKI9|NUOB_FLAJ1 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|146153423|gb|ABQ04277.1| NADH dehydrogenase subunit B [Flavobacterium johnsoniae UW101]
          Length = 182

 Score =  202 bits (514), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 66/150 (44%), Positives = 103/150 (68%), Gaps = 2/150 (1%)

Query: 30  SSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA- 88
              +T +GF  T ++ +V  AR  SL  + F  +CC +E M      YDL RFG    + 
Sbjct: 12  PEGLTGEGFFATKLNDVVGLARANSLWPLPFATSCCGIEFMATMAAHYDLARFGSERVSF 71

Query: 89  SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 148
           SPRQ+D+++V GT++ KMA  LR+VY+QM EPR+VI++G+CA+ GG +  +YSV++G D+
Sbjct: 72  SPRQADMLLVMGTISKKMAPILRQVYEQMSEPRWVIAVGACASSGGVF-DTYSVLQGIDK 130

Query: 149 IVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           ++PVD+YVPGCPP  E ++ G++ LQ+ ++
Sbjct: 131 VIPVDVYVPGCPPRPEQIVDGVMRLQELVK 160


>gi|91773272|ref|YP_565964.1| F420H2 dehydrogenase subunit B [Methanococcoides burtonii DSM 6242]
 gi|91712287|gb|ABE52214.1| F420H2 dehydrogenase subunit B [Methanococcoides burtonii DSM 6242]
          Length = 184

 Score =  202 bits (514), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 66/170 (38%), Positives = 98/170 (57%), Gaps = 6/170 (3%)

Query: 14  QSSCSLEKVDADFSRISSEITHKGFLVT------SVDQLVTWARTGSLMWMTFGLACCAV 67
             + ++E  +     I   IT     +T          L+ W R  SL ++T  + CC V
Sbjct: 5   NDNETVENQEGYVEEIPGVITTTSMAITEFLKKTKAQDLINWGRKNSLWFLTQPMGCCGV 64

Query: 68  EMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMG 127
           EM+      YD +RFG  PR SPR +DVMI++G +T K   AL  +++QM  P++VI MG
Sbjct: 65  EMIATGCAHYDTDRFGIIPRNSPRAADVMIISGYVTKKYLPALNTLWEQMAAPKWVICMG 124

Query: 128 SCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
            C+  GG ++ SYS V+  D++ P+D+++PGCPP  EAL+ G + LQKKI
Sbjct: 125 DCSISGGPFYESYSTVQNIDKMFPIDVFIPGCPPRPEALLQGFIELQKKI 174


>gi|317492622|ref|ZP_07951049.1| NADH-quinone oxidoreductase [Enterobacteriaceae bacterium
           9_2_54FAA]
 gi|316919372|gb|EFV40704.1| NADH-quinone oxidoreductase [Enterobacteriaceae bacterium
           9_2_54FAA]
          Length = 224

 Score =  202 bits (514), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 76/172 (44%), Positives = 105/172 (61%), Gaps = 5/172 (2%)

Query: 14  QSSCSLEKVDADFSRISSEITHK---GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMM 70
                L+K +     +   +      G L  ++  +V W R  SL    FGL+CC VEM+
Sbjct: 14  NDRYPLQKQEIVTDPLEQHVHRSVYMGKLENALHDMVNWGRKNSLWPYNFGLSCCYVEMV 73

Query: 71  QASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSC 129
            +    +D+ RFG    RASPRQ+D M+VAGT   KMA  ++R+YDQM EP++VISMGSC
Sbjct: 74  TSFTAVHDVARFGAEVLRASPRQADFMVVAGTCFTKMAPVIQRLYDQMLEPKWVISMGSC 133

Query: 130 ANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
           AN GG Y   YSVV+G D+ +PVD+Y+PGCPP  EA +  ++LLQ+ I +  
Sbjct: 134 ANSGGMY-DIYSVVQGVDKFIPVDVYIPGCPPRPEAYMQALMLLQESIGKER 184


>gi|83951739|ref|ZP_00960471.1| NADH dehydrogenase beta subunit [Roseovarius nubinhibens ISM]
 gi|83836745|gb|EAP76042.1| NADH dehydrogenase beta subunit [Roseovarius nubinhibens ISM]
          Length = 127

 Score =  202 bits (514), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 111/126 (88%), Positives = 116/126 (92%), Gaps = 1/126 (0%)

Query: 58  MTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQM 117
           MTF   CCAVEMM  +MPRYD ERFGFAPRASPRQSDVMIVAGTLTNKMA ALR+VYDQM
Sbjct: 1   MTFVC-CCAVEMMHVAMPRYDAERFGFAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQM 59

Query: 118 PEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
           PEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQ+KI
Sbjct: 60  PEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQRKI 119

Query: 178 RRVGNV 183
           RR G +
Sbjct: 120 RRTGTI 125


>gi|330958158|gb|EGH58418.1| NADH dehydrogenase subunit B [Pseudomonas syringae pv. maculicola
           str. ES4326]
          Length = 224

 Score =  202 bits (513), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 75/175 (42%), Positives = 107/175 (61%), Gaps = 7/175 (4%)

Query: 12  SGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQL----VTWARTGSLMWMTFGLACCAV 67
           +      + K +     +  ++ HK   +  ++ +    V W R  SL    FGL+CC V
Sbjct: 12  APNEQYPIGKRETVSDPLEDQV-HKNIFMGKLEDVLNGAVNWGRKNSLWPYNFGLSCCYV 70

Query: 68  EMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISM 126
           EM  A    +D+ RFG    RASPRQ+D M++AGT   KMA  ++R+Y+QM EP++VISM
Sbjct: 71  EMTTAFTAPHDIARFGAEVIRASPRQADFMVIAGTPFLKMAPIIQRLYEQMLEPKWVISM 130

Query: 127 GSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
           G+CAN GG Y   YSVV+G D+ +PVD+YVPGCPP  EA + G++LLQ+ I +  
Sbjct: 131 GACANSGGMY-DIYSVVQGVDKFLPVDVYVPGCPPRPEAFLQGLMLLQESIGQER 184


>gi|84494897|ref|ZP_00994016.1| putative NADH dehydrogenase I chain B [Janibacter sp. HTCC2649]
 gi|84384390|gb|EAQ00270.1| putative NADH dehydrogenase I chain B [Janibacter sp. HTCC2649]
          Length = 212

 Score =  202 bits (513), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 76/138 (55%), Positives = 103/138 (74%), Gaps = 1/138 (0%)

Query: 41  TSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR-ASPRQSDVMIVA 99
             +  ++ W R  SL    FGLACCA+E + ASM R+D  R G  P    PRQ+D+M+V+
Sbjct: 23  KPIRVVLNWGRRYSLWVFNFGLACCAIEFIAASMGRHDFIRLGVIPFAPGPRQADLMVVS 82

Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGC 159
           GT+T+KMA A+RR+YDQMPEP+YVIS G+C+N GG Y  SYSV +G D+++PVD+YVPGC
Sbjct: 83  GTVTDKMAPAIRRLYDQMPEPKYVISFGACSNSGGPYWDSYSVTKGVDQLIPVDVYVPGC 142

Query: 160 PPTAEALIYGILLLQKKI 177
           PP  EAL++GI+ LQ++I
Sbjct: 143 PPRPEALLHGIIKLQEQI 160


>gi|86158994|ref|YP_465779.1| NADH dehydrogenase subunit B [Anaeromyxobacter dehalogenans 2CP-C]
 gi|123498614|sp|Q2IL09|NUOB2_ANADE RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName:
           Full=NADH dehydrogenase I subunit B 2; AltName:
           Full=NDH-1 subunit B 2
 gi|85775505|gb|ABC82342.1| NADH dehydrogenase subunit B [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 173

 Score =  202 bits (513), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 84/139 (60%), Positives = 104/139 (74%)

Query: 40  VTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVA 99
            + +D L+  AR  SL ++TFGLACC +E+MQ   PR DL RFG  PRASPRQ+D MIVA
Sbjct: 18  TSQLDNLINLARASSLYYLTFGLACCGIELMQTGGPRADLMRFGAIPRASPRQADFMIVA 77

Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGC 159
           GTLT KMA   R +YDQMPEP+YVISMGSC+N GG +   YSV +G D+++PVD+YVPGC
Sbjct: 78  GTLTYKMAERARLLYDQMPEPKYVISMGSCSNCGGLFQLGYSVCKGVDKVIPVDVYVPGC 137

Query: 160 PPTAEALIYGILLLQKKIR 178
           PP  EAL  G+L LQ+ +R
Sbjct: 138 PPRPEALTEGLLRLQEIVR 156


>gi|197285619|ref|YP_002151491.1| NADH dehydrogenase subunit B [Proteus mirabilis HI4320]
 gi|226327884|ref|ZP_03803402.1| hypothetical protein PROPEN_01765 [Proteus penneri ATCC 35198]
 gi|227356122|ref|ZP_03840512.1| NADH-quinone oxidoreductase chain B [Proteus mirabilis ATCC 29906]
 gi|238065191|sp|B4EZC9|NUOB_PROMH RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|194683106|emb|CAR43667.1| NADH-quinone oxidoreductase chain B [Proteus mirabilis HI4320]
 gi|225203588|gb|EEG85942.1| hypothetical protein PROPEN_01765 [Proteus penneri ATCC 35198]
 gi|227163767|gb|EEI48679.1| NADH-quinone oxidoreductase chain B [Proteus mirabilis ATCC 29906]
          Length = 224

 Score =  202 bits (513), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 76/181 (41%), Positives = 111/181 (61%), Gaps = 3/181 (1%)

Query: 3   LTTVNQKIISGQSSCSLEKVDAD-FSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFG 61
           LT ++    + +     +++ +D          + G L  ++  +V W R  SL    FG
Sbjct: 5   LTRIDPNGENDRYPLQSQEIVSDPLDAHVHRSVYMGKLEHALHDVVNWGRKNSLWPYNFG 64

Query: 62  LACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           L+CC VEM+ +    +D+ RFG    RASPRQ+D M+VAGT   KMA  ++R+YDQM EP
Sbjct: 65  LSCCYVEMVTSFTAVHDVARFGSEVLRASPRQADFMVVAGTCFTKMAPVIQRLYDQMLEP 124

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           ++VISMG+CAN GG Y   YSVV+G D+ +PVD+Y+PGCPP  EA +  ++LLQ+ I + 
Sbjct: 125 KWVISMGACANSGGMY-DIYSVVQGVDKFIPVDVYIPGCPPRPEAYMQALMLLQESIGKE 183

Query: 181 G 181
            
Sbjct: 184 R 184


>gi|332883543|gb|EGK03826.1| NADH-quinone oxidoreductase subunit B [Dysgonomonas mossii DSM
           22836]
          Length = 183

 Score =  202 bits (513), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 63/149 (42%), Positives = 99/149 (66%), Gaps = 2/149 (1%)

Query: 37  GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQSDV 95
           GF  T  D ++  AR  SL  + F  +CC +E M      YD+ RFG      SPRQ+D+
Sbjct: 20  GFFATKFDYVIGLARANSLWPLPFATSCCGIEFMATMAATYDMGRFGAERNSFSPRQADM 79

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
           ++V GT++ KMA  LR VY+QM EP++VI++G+CA+ GG +  +YSV++G D+++PVD+Y
Sbjct: 80  LMVMGTISKKMAPILRHVYEQMAEPKWVIAVGACASSGGIF-DTYSVLQGIDKVIPVDVY 138

Query: 156 VPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           VPGCPP  E ++ G++ LQ+ ++    ++
Sbjct: 139 VPGCPPRPEQILDGVMQLQELVKHESILR 167


>gi|239905979|ref|YP_002952718.1| NADH-quinone oxidoreductase chain B/C/D [Desulfovibrio magneticus
           RS-1]
 gi|239795843|dbj|BAH74832.1| NADH-quinone oxidoreductase chain B/C/D [Desulfovibrio magneticus
           RS-1]
          Length = 793

 Score =  202 bits (513), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 74/140 (52%), Positives = 99/140 (70%), Gaps = 2/140 (1%)

Query: 39  LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQSDVMI 97
           L    D ++ WAR  SL    FGL+CC VE   A  PRYD+ RFG    R SPRQ+DV+I
Sbjct: 8   LFRPADAVINWARKNSLWPFFFGLSCCFVEEATAWGPRYDIARFGSEVFRGSPRQADVLI 67

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           V+GT+  K+A    ++Y+QM +P++VISMGSC+N GG Y   YSVV+G D+I+P+D+Y+P
Sbjct: 68  VSGTMFKKIAPVALQLYEQMSDPKWVISMGSCSNSGGMY-DVYSVVQGSDQILPIDVYIP 126

Query: 158 GCPPTAEALIYGILLLQKKI 177
           GCPP  EA+  G++LLQKKI
Sbjct: 127 GCPPRPEAVFEGLMLLQKKI 146


>gi|119714785|ref|YP_921750.1| NADH dehydrogenase subunit B [Nocardioides sp. JS614]
 gi|238065185|sp|A1SE28|NUOB_NOCSJ RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|119535446|gb|ABL80063.1| NADH dehydrogenase subunit B [Nocardioides sp. JS614]
          Length = 184

 Score =  202 bits (513), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 76/152 (50%), Positives = 106/152 (69%), Gaps = 2/152 (1%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89
            E    G L+++V+ L  + R  S    +FGLACCA+EMM +  P++DL RFG    RAS
Sbjct: 4   EEKLPSGVLLSTVEGLAGYMRKASFWPASFGLACCAIEMMTSGGPKHDLGRFGMEVFRAS 63

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQ+DVMIVAG ++ KMA  LR++YDQMPEP++V++MG CA+ GG ++  Y+VV+G D +
Sbjct: 64  PRQADVMIVAGRVSQKMAPVLRQIYDQMPEPKWVLAMGVCASSGGMFNN-YAVVQGVDHV 122

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
           VPVD+Y+PGCPP  + LI  IL L  K++   
Sbjct: 123 VPVDMYLPGCPPRPQMLIDAILKLHDKVQHTK 154


>gi|257077079|ref|ZP_05571440.1| NADH dehydrogenase subunit B [Ferroplasma acidarmanus fer1]
          Length = 157

 Score =  202 bits (513), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 76/150 (50%), Positives = 103/150 (68%), Gaps = 1/150 (0%)

Query: 32  EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APRASP 90
           +    G   T++++ + W R+ SL  +T GLACCA+EMM       D+ RFG    R SP
Sbjct: 5   KTGDLGVKTTTLEKALQWGRSNSLWPLTMGLACCAIEMMATQAADLDMARFGSEIFRNSP 64

Query: 91  RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150
           RQSD+MIVAGT T +MA  ++R+Y++MP P+YVI+MG C   GG Y   YSVV G D+++
Sbjct: 65  RQSDLMIVAGTTTKRMAPRVKRIYEEMPYPKYVIAMGVCVIQGGPYVDGYSVVLGVDKVI 124

Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           PVD+YVPGCPP+ +AL YG++ LQKKIR  
Sbjct: 125 PVDVYVPGCPPSPQALTYGLITLQKKIRNE 154


>gi|70731257|ref|YP_260998.1| NADH dehydrogenase subunit B [Pseudomonas fluorescens Pf-5]
 gi|123654431|sp|Q4K9T5|NUOB_PSEF5 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|68345556|gb|AAY93162.1| NADH-quinone oxidoreductase, B subunit [Pseudomonas fluorescens
           Pf-5]
          Length = 224

 Score =  202 bits (513), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 75/175 (42%), Positives = 107/175 (61%), Gaps = 7/175 (4%)

Query: 12  SGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQL----VTWARTGSLMWMTFGLACCAV 67
           +      + + +     +  ++ HK   +  ++ +    V W R  SL    FGL+CC V
Sbjct: 12  APNDQYPIGERETVSDPLEDQV-HKNIFMGKLEDVLSGAVNWGRKNSLWPYNFGLSCCYV 70

Query: 68  EMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISM 126
           EM  A    +D+ RFG    RASPRQ+D M++AGT   KMA  ++R+Y+QM EP++VISM
Sbjct: 71  EMTTAFTAPHDIARFGAEVIRASPRQADFMVIAGTCFIKMAPIIQRLYEQMLEPKWVISM 130

Query: 127 GSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
           GSCAN GG Y   YSVV+G D+ +PVD+YVPGCPP  EA + G++LLQ+ I +  
Sbjct: 131 GSCANSGGMY-DIYSVVQGVDKFLPVDVYVPGCPPRPEAFLQGLMLLQESIGQER 184


>gi|283850904|ref|ZP_06368190.1| NADH dehydrogenase I, D subunit [Desulfovibrio sp. FW1012B]
 gi|283573827|gb|EFC21801.1| NADH dehydrogenase I, D subunit [Desulfovibrio sp. FW1012B]
          Length = 790

 Score =  202 bits (513), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 77/140 (55%), Positives = 99/140 (70%), Gaps = 2/140 (1%)

Query: 39  LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQSDVMI 97
           L    D ++ WAR  S+    FGL+CC VE   A  PRYD+ R+G    R SPRQ+DV+I
Sbjct: 8   LFRPTDHIINWARKNSIWPFFFGLSCCFVEEATAWGPRYDIARYGSEVFRGSPRQADVLI 67

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           V+GTL  K+A    R+Y+QM +P++VISMGSC+N GG Y   YSVV+G D+I+PVD+Y+P
Sbjct: 68  VSGTLFTKVAPVALRLYEQMSDPKWVISMGSCSNSGGMY-DVYSVVQGTDQILPVDVYIP 126

Query: 158 GCPPTAEALIYGILLLQKKI 177
           GCPP  EAL  G+LLLQKKI
Sbjct: 127 GCPPRPEALFDGLLLLQKKI 146


>gi|150026262|ref|YP_001297088.1| NADH dehydrogenase I, B subunit [Flavobacterium psychrophilum
           JIP02/86]
 gi|238065145|sp|A6H1R3|NUOB_FLAPJ RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|149772803|emb|CAL44287.1| NADH dehydrogenase I, B subunit [Flavobacterium psychrophilum
           JIP02/86]
          Length = 181

 Score =  202 bits (513), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 65/158 (41%), Positives = 105/158 (66%), Gaps = 2/158 (1%)

Query: 22  VDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLER 81
            + +       +T +GF  T ++ +V  AR  S+  + F  +CC +E M      YDL R
Sbjct: 3   SNINIVEAPEGVTGEGFFATKLNDVVGLARANSMWPLPFATSCCGIEFMATMASHYDLAR 62

Query: 82  FGFAPRA-SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSY 140
           FG    + SPRQ+D+++V GT++ KMA  LR+VY+QM EPR+VI++G+CA+ GG +  +Y
Sbjct: 63  FGSERVSFSPRQADMLMVMGTISKKMAPILRQVYEQMAEPRWVIAVGACASSGGIF-DTY 121

Query: 141 SVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           SV++G D+++PVD+YVPGCPP  E ++ G++ LQ+ ++
Sbjct: 122 SVLQGIDKVIPVDVYVPGCPPRPEQIVDGVMRLQELVK 159


>gi|301061312|ref|ZP_07202094.1| NADH dehydrogenase, C subunit [delta proteobacterium NaphS2]
 gi|300444631|gb|EFK08614.1| NADH dehydrogenase, C subunit [delta proteobacterium NaphS2]
          Length = 484

 Score =  202 bits (513), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 71/150 (47%), Positives = 104/150 (69%), Gaps = 2/150 (1%)

Query: 36  KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSD 94
           +  +++  D ++ WAR  S   M FGL+CC +E M     RYD+ RFG    R +PRQ+D
Sbjct: 8   EDMVISMADDVINWARQYSFWPMFFGLSCCFIEQMVTYTSRYDISRFGAEVLRGTPRQAD 67

Query: 95  VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154
           ++I +GT+  K+A  + R+Y+QMPEP++V+SMGSC+N GG Y   YSVV+G D+I+PVDI
Sbjct: 68  LLITSGTIFKKIAPVVLRLYEQMPEPKWVMSMGSCSNCGGMY-DVYSVVQGIDQILPVDI 126

Query: 155 YVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           Y+PGCPP  EA++ G+ LLQKK++     +
Sbjct: 127 YIPGCPPRPEAVLQGLTLLQKKVKGERPTR 156


>gi|320540451|ref|ZP_08040101.1| putative NADH:ubiquinone oxidoreductase, chain B [Serratia
           symbiotica str. Tucson]
 gi|320029382|gb|EFW11411.1| putative NADH:ubiquinone oxidoreductase, chain B [Serratia
           symbiotica str. Tucson]
          Length = 224

 Score =  201 bits (512), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 76/185 (41%), Positives = 110/185 (59%), Gaps = 5/185 (2%)

Query: 1   MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHK---GFLVTSVDQLVTWARTGSLMW 57
           M  T    +         L+K +     +  ++      G L  +V  +V W R  S+  
Sbjct: 1   MDYTLTRIEPNGENDRYPLQKQEIVADPLEQQVHRTVYMGKLEHAVHDMVNWGRKNSIWP 60

Query: 58  MTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQ 116
             FGL+CC VEM+ +    +D+ RFG    RASPRQ+D+M+VAGT   KMA  ++R+Y+Q
Sbjct: 61  YNFGLSCCYVEMVNSFTAVHDVARFGAEVLRASPRQADLMVVAGTCFTKMAPVIQRLYEQ 120

Query: 117 MPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKK 176
           M EP++VISMG+CAN GG Y   YSVV+G D+ +PVD+Y+PGCPP  EA +  ++LLQ+ 
Sbjct: 121 MLEPKWVISMGACANSGGMY-DIYSVVQGVDKFLPVDVYIPGCPPRPEAYMQALMLLQES 179

Query: 177 IRRVG 181
           I +  
Sbjct: 180 IGKER 184


>gi|332830189|gb|EGK02817.1| NADH-quinone oxidoreductase subunit B [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 183

 Score =  201 bits (512), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 63/145 (43%), Positives = 97/145 (66%), Gaps = 2/145 (1%)

Query: 37  GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQSDV 95
           GF  T  D ++  AR  SL  + F  +CC +E M      YD+ RFG      SPRQ+D+
Sbjct: 20  GFFATKFDYVIGLARANSLWPLPFATSCCGIEFMATMASTYDMGRFGAERNSFSPRQADM 79

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
           ++V GT++ KMA  LR VY+QM EP++VI++G+CA+ GG +  +YSV++G D+++PVD+Y
Sbjct: 80  LLVMGTISKKMAPILRHVYEQMAEPKWVIAVGACASSGGIF-DTYSVLQGIDKVIPVDVY 138

Query: 156 VPGCPPTAEALIYGILLLQKKIRRV 180
           VPGCPP  E ++ G++ LQ+ ++  
Sbjct: 139 VPGCPPRPEQILDGVMQLQELVKHE 163


>gi|94677027|ref|YP_588824.1| NADH dehydrogenase subunit B [Baumannia cicadellinicola str. Hc
           (Homalodisca coagulata)]
 gi|238055242|sp|Q1LT90|NUOB_BAUCH RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|94220177|gb|ABF14336.1| NADH-quinone oxidoreductase, B subunit [Baumannia cicadellinicola
           str. Hc (Homalodisca coagulata)]
          Length = 224

 Score =  201 bits (512), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 81/185 (43%), Positives = 110/185 (59%), Gaps = 5/185 (2%)

Query: 1   MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHK---GFLVTSVDQLVTWARTGSLMW 57
           M  T       S ++  SL++ D+    I   +      G L   +  +V W R  SL  
Sbjct: 1   MNYTLTRILSNSKENRKSLQEDDSATLLIEQHVNSNIYLGKLKHILKSIVKWGRGNSLWP 60

Query: 58  MTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQ 116
             FGL+CC VEM  +    +D+ RFG    RASPRQ+D M++AGT   KMA  ++R+YDQ
Sbjct: 61  YNFGLSCCYVEMTTSFTAVHDVARFGSEVIRASPRQADFMVIAGTPFIKMAPVIKRLYDQ 120

Query: 117 MPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKK 176
           M EP++VISMGSCAN GG Y   YSVV+G D+ +PVD+Y+PGCPP  EA I  +LLL++ 
Sbjct: 121 MLEPKWVISMGSCANSGGMY-DIYSVVQGVDKFLPVDVYIPGCPPRPEAYIQALLLLKEA 179

Query: 177 IRRVG 181
           I +  
Sbjct: 180 IGKEQ 184


>gi|330810464|ref|YP_004354926.1| NADH-quinone oxidoreductase subunit B [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|9719438|gb|AAF97798.1|AF281148_2 NADH dehydrogenase I subunit B [Pseudomonas fluorescens]
 gi|327378572|gb|AEA69922.1| NADH-quinone oxidoreductase subunit B [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 224

 Score =  201 bits (512), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 75/175 (42%), Positives = 107/175 (61%), Gaps = 7/175 (4%)

Query: 12  SGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQL----VTWARTGSLMWMTFGLACCAV 67
           +      + + +     +  ++ HK   +  ++ +    V W R  SL    FGL+CC V
Sbjct: 12  APNEQYPIGERETVADPLEDQV-HKNIFMGKLEDVLNSTVNWGRKNSLWPYNFGLSCCYV 70

Query: 68  EMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISM 126
           EM  A    +D+ RFG    RASPRQ+D M++AGT   KMA  ++R+Y+QM EP++VISM
Sbjct: 71  EMTTAFTAPHDIARFGAEVIRASPRQADFMVIAGTCFIKMAPIIQRLYEQMLEPKWVISM 130

Query: 127 GSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
           GSCAN GG Y   YSVV+G D+ +PVD+YVPGCPP  EA + G++LLQ+ I +  
Sbjct: 131 GSCANSGGMY-DIYSVVQGVDKFLPVDVYVPGCPPRPEAFLQGLMLLQESIGQER 184


>gi|77459826|ref|YP_349333.1| NADH dehydrogenase subunit B [Pseudomonas fluorescens Pf0-1]
 gi|123604056|sp|Q3KA62|NUOB_PSEPF RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|77383829|gb|ABA75342.1| NADH dehydrogenase subunit B [Pseudomonas fluorescens Pf0-1]
          Length = 224

 Score =  201 bits (512), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 75/175 (42%), Positives = 107/175 (61%), Gaps = 7/175 (4%)

Query: 12  SGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQL----VTWARTGSLMWMTFGLACCAV 67
           +      + + +     +  ++ HK   +  ++ +    V W R  SL    FGL+CC V
Sbjct: 12  APNEQYPIGQRETVSDPLEDQV-HKNIFMGKLEDVLSGAVNWGRKNSLWPYNFGLSCCYV 70

Query: 68  EMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISM 126
           EM  A    +D+ RFG    RASPRQ+D M++AGT   KMA  ++R+Y+QM EP++VISM
Sbjct: 71  EMTTAFTAPHDIARFGAEVIRASPRQADFMVIAGTCFIKMAPIIQRLYEQMLEPKWVISM 130

Query: 127 GSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
           GSCAN GG Y   YSVV+G D+ +PVD+YVPGCPP  EA + G++LLQ+ I +  
Sbjct: 131 GSCANSGGMY-DIYSVVQGVDKFLPVDVYVPGCPPRPEAFLQGLMLLQESIGQER 184


>gi|84494929|ref|ZP_00994048.1| NADH dehydrogenase beta subunit [Janibacter sp. HTCC2649]
 gi|84384422|gb|EAQ00302.1| NADH dehydrogenase beta subunit [Janibacter sp. HTCC2649]
          Length = 198

 Score =  201 bits (512), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 74/152 (48%), Positives = 105/152 (69%), Gaps = 2/152 (1%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89
            E    GF++T+++ +  + R  S+   TFGLACCA+EMM    P YD+ RFG     A+
Sbjct: 4   EEKLPAGFVLTTLESVAGYMRKASIWPATFGLACCAIEMMAVGTPDYDIARFGMERFSAT 63

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQ+D+MIVAG ++NKMA  +R+VYDQMP P++VISMG CA+ GG ++  Y++V+G D I
Sbjct: 64  PRQADLMIVAGRVSNKMAPVVRQVYDQMPNPKWVISMGVCASSGGMFNN-YAIVQGVDHI 122

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
           +PVDIY+PGCPP  E L+  I+ L  +I+   
Sbjct: 123 IPVDIYLPGCPPRPEMLLNAIIELHDQIQNSK 154


>gi|312961687|ref|ZP_07776185.1| NADH-quinone oxidoreductase subunit B [Pseudomonas fluorescens WH6]
 gi|311283946|gb|EFQ62529.1| NADH-quinone oxidoreductase subunit B [Pseudomonas fluorescens WH6]
          Length = 224

 Score =  201 bits (512), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 75/175 (42%), Positives = 107/175 (61%), Gaps = 7/175 (4%)

Query: 12  SGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQL----VTWARTGSLMWMTFGLACCAV 67
           +      + + +     +  ++ HK   +  ++ +    V W R  SL    FGL+CC V
Sbjct: 12  APNEQYPIGERETVSDPLEDQV-HKNIYMGKLEDVLSGAVNWGRKNSLWPYNFGLSCCYV 70

Query: 68  EMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISM 126
           EM  A    +D+ RFG    RASPRQ+D M++AGT   KMA  ++R+Y+QM EP++VISM
Sbjct: 71  EMTTAFTAPHDIARFGAEVIRASPRQADFMVIAGTCFIKMAPIIQRLYEQMLEPKWVISM 130

Query: 127 GSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
           GSCAN GG Y   YSVV+G D+ +PVD+YVPGCPP  EA + G++LLQ+ I +  
Sbjct: 131 GSCANSGGMY-DIYSVVQGVDKFLPVDVYVPGCPPRPEAFLQGLMLLQESIGKER 184


>gi|229591254|ref|YP_002873373.1| NADH dehydrogenase subunit B [Pseudomonas fluorescens SBW25]
 gi|259514679|sp|C3JY82|NUOB_PSEFS RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|229363120|emb|CAY50138.1| NADH-quinone oxidoreductase chain B [Pseudomonas fluorescens SBW25]
          Length = 224

 Score =  201 bits (512), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 75/175 (42%), Positives = 107/175 (61%), Gaps = 7/175 (4%)

Query: 12  SGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQL----VTWARTGSLMWMTFGLACCAV 67
           +      + + +     +  ++ HK   +  ++ +    V W R  SL    FGL+CC V
Sbjct: 12  APNDQYPIGERETVSDPLEDQV-HKNIYMGKLEDVLSGAVNWGRKNSLWPYNFGLSCCYV 70

Query: 68  EMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISM 126
           EM  A    +D+ RFG    RASPRQ+D M++AGT   KMA  ++R+Y+QM EP++VISM
Sbjct: 71  EMTTAFTAPHDIARFGAEVIRASPRQADFMVIAGTCFIKMAPIIQRLYEQMLEPKWVISM 130

Query: 127 GSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
           GSCAN GG Y   YSVV+G D+ +PVD+YVPGCPP  EA + G++LLQ+ I +  
Sbjct: 131 GSCANSGGMY-DIYSVVQGVDKFLPVDVYVPGCPPRPEAFLQGLMLLQESIGKER 184


>gi|71410632|ref|XP_807601.1| NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial
           precursor [Trypanosoma cruzi strain CL
 gi|71652884|ref|XP_815090.1| NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial
           precursor [Trypanosoma cruzi strain CL
 gi|70871638|gb|EAN85750.1| NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial
           precursor, putative [Trypanosoma cruzi]
 gi|70880118|gb|EAN93239.1| NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial
           precursor, putative [Trypanosoma cruzi]
          Length = 202

 Score =  201 bits (511), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 84/137 (61%), Positives = 110/137 (80%)

Query: 42  SVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGT 101
           ++  L  W  T SL  +TFGLACCAVEMM A   RYDL+RFG  PR +PRQ++++IV+GT
Sbjct: 55  TLHDLTEWCLTYSLWPLTFGLACCAVEMMHAYAARYDLDRFGIVPRPTPRQAEIIIVSGT 114

Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP 161
           +TNKMA  LR +Y QM  P++VISMGSCANGGGYYH+SY+V+RGC+R +PVD ++PGCPP
Sbjct: 115 VTNKMAPLLRNIYVQMVNPKWVISMGSCANGGGYYHFSYAVLRGCERAIPVDFWIPGCPP 174

Query: 162 TAEALIYGILLLQKKIR 178
           +AE+L++ +  LQKKIR
Sbjct: 175 SAESLVFCLHTLQKKIR 191


>gi|322819469|gb|EFZ26582.1| NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial
           precursor, putative [Trypanosoma cruzi]
          Length = 189

 Score =  201 bits (511), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 84/137 (61%), Positives = 110/137 (80%)

Query: 42  SVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGT 101
           ++  L  W  T SL  +TFGLACCAVEMM A   RYDL+RFG  PR +PRQ++++IV+GT
Sbjct: 42  TLHDLTEWCLTYSLWPLTFGLACCAVEMMHAYAARYDLDRFGIVPRPTPRQAEIIIVSGT 101

Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP 161
           +TNKMA  LR +Y QM  P++VISMGSCANGGGYYH+SY+V+RGC+R +PVD ++PGCPP
Sbjct: 102 VTNKMAPLLRNIYVQMVNPKWVISMGSCANGGGYYHFSYAVLRGCERAIPVDFWIPGCPP 161

Query: 162 TAEALIYGILLLQKKIR 178
           +AE+L++ +  LQKKIR
Sbjct: 162 SAESLVFCLHTLQKKIR 178


>gi|304413372|ref|ZP_07394845.1| NADH:ubiquinone oxidoreductase, chain B [Candidatus Regiella
           insecticola LSR1]
 gi|304284215|gb|EFL92608.1| NADH:ubiquinone oxidoreductase, chain B [Candidatus Regiella
           insecticola LSR1]
          Length = 225

 Score =  201 bits (511), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 76/186 (40%), Positives = 107/186 (57%), Gaps = 6/186 (3%)

Query: 1   MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVD----QLVTWARTGSLM 56
           M  T    +         L+  +        +  H+   +  ++     +V W R  SL 
Sbjct: 1   MDYTLTRAEPSGENDRYPLQSQETVSGDPLEQHVHRSVYMGKLENALHDMVNWGRKNSLW 60

Query: 57  WMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYD 115
              FGL+CC VEM+ +    +D+ RFG    RASPRQ+D M+VAGT   KMA  ++R+Y+
Sbjct: 61  PYNFGLSCCYVEMVTSFTAVHDVARFGAEVLRASPRQADFMVVAGTCFTKMAPVIQRLYE 120

Query: 116 QMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175
           QM EP++VISMG+CAN GG Y   YSVV+G D+ +PVD+Y+PGCPP  EA +  +LLLQK
Sbjct: 121 QMLEPKWVISMGACANSGGMY-DIYSVVQGVDKFLPVDVYIPGCPPRPEAYMQALLLLQK 179

Query: 176 KIRRVG 181
            I +  
Sbjct: 180 SIDKER 185


>gi|290559400|gb|EFD92732.1| NADH-quinone oxidoreductase, B subunit [Candidatus Parvarchaeum
           acidophilus ARMAN-5]
          Length = 172

 Score =  201 bits (511), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 66/141 (46%), Positives = 95/141 (67%), Gaps = 1/141 (0%)

Query: 43  VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA-SPRQSDVMIVAGT 101
           +D ++ W R+ SL  +TFG +CCA+EMM     + D +R G      SPRQSD+++V+GT
Sbjct: 24  IDTVLNWGRSNSLWPLTFGTSCCAIEMMTFGATKVDSDRLGVLFVGDSPRQSDLILVSGT 83

Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP 161
           +T KMA  L  VY+QMP+P+YVI++G+C   GG YH SY+ + G DRI+PVD +VPGCPP
Sbjct: 84  ITKKMARRLLNVYEQMPDPKYVIAVGACNISGGLYHDSYNTIDGIDRIMPVDAFVPGCPP 143

Query: 162 TAEALIYGILLLQKKIRRVGN 182
             E  +  + +LQK I+   +
Sbjct: 144 RPEEFLDAVRVLQKLIKENKS 164


>gi|300771676|ref|ZP_07081551.1| NADH-quinone oxidoreductase subunit B [Sphingobacterium
           spiritivorum ATCC 33861]
 gi|300761665|gb|EFK58486.1| NADH-quinone oxidoreductase subunit B [Sphingobacterium
           spiritivorum ATCC 33861]
          Length = 184

 Score =  201 bits (511), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 68/160 (42%), Positives = 102/160 (63%), Gaps = 2/160 (1%)

Query: 22  VDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLER 81
            +   +     +   GF  T++D+ +  AR  SL  + F  +CC +E M      YDL R
Sbjct: 2   SNVKLAEAPPGVEGSGFFATTLDKAIGLARANSLWPLPFATSCCGIEFMATMGSTYDLAR 61

Query: 82  FGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSY 140
           FG   P  SPRQ+D+++V GT+  KMA  L++VY QM EPR+VI++G+CA+ GG +  +Y
Sbjct: 62  FGAERPSFSPRQADMLLVMGTIAKKMAPVLKQVYVQMAEPRWVIAVGACASSGGIF-DTY 120

Query: 141 SVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           SV++G D I+PVD+YVPGCPP  EA++ G+L LQ+ ++  
Sbjct: 121 SVLQGIDEIIPVDVYVPGCPPRPEAILDGVLRLQEIVKNE 160


>gi|126666305|ref|ZP_01737284.1| NADH dehydrogenase subunit B [Marinobacter sp. ELB17]
 gi|126629106|gb|EAZ99724.1| NADH dehydrogenase subunit B [Marinobacter sp. ELB17]
          Length = 226

 Score =  201 bits (511), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 78/184 (42%), Positives = 105/184 (57%), Gaps = 5/184 (2%)

Query: 2   GLTTVNQKIISGQSSCSLEKVDADFSRISSEITHK---GFLVTSVDQLVTWARTGSLMWM 58
            LT     + +      L K       +  ++      G L  +++  V W R  SL   
Sbjct: 4   SLTRAEDAVAAENDRYPLGKQQQVEDPMRQQVHRSVYTGKLKDALNSTVNWGRKNSLWPY 63

Query: 59  TFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQM 117
            FGL+CC VEM  A    +D+ RFG    RASPRQ+D M++AGT   KMA  ++++YDQM
Sbjct: 64  NFGLSCCYVEMTTAFTSPHDIARFGAEVIRASPRQADFMVIAGTCFVKMAPIIQQLYDQM 123

Query: 118 PEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
            EP++VISMGSCAN GG Y   YSVV+G D+ +PVD+YV GCPP  EA + G+ LLQ  I
Sbjct: 124 LEPKWVISMGSCANSGGMY-DIYSVVQGVDKFLPVDVYVAGCPPRPEAFLQGLQLLQDSI 182

Query: 178 RRVG 181
           +   
Sbjct: 183 QEER 186


>gi|218528061|sp|Q67P21|NUOB1_SYMTH RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName:
           Full=NADH dehydrogenase I subunit B 1; AltName:
           Full=NDH-1 subunit B 1
          Length = 166

 Score =  201 bits (511), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 75/146 (51%), Positives = 112/146 (76%), Gaps = 3/146 (2%)

Query: 37  GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQ-ASMPRYDLERFGFA-PRASPRQSD 94
           GF+ T+VD  + WA++ S+  +TFGLACCA+EMM  AS PRYD+ RFG    RASPRQ+D
Sbjct: 12  GFVTTTVDSFLRWAQSNSIWPLTFGLACCAIEMMNLASGPRYDIARFGSEAFRASPRQAD 71

Query: 95  VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154
           ++ ++G ++NKMA  ++RVY QM EP++V++ G+CA+ GG +  +Y++++G D ++PVDI
Sbjct: 72  LIFISGRVSNKMAPVIKRVYSQMLEPKWVVAFGACASSGGIF-DNYAIMQGVDNLLPVDI 130

Query: 155 YVPGCPPTAEALIYGILLLQKKIRRV 180
           YVPGCPPT EA+IY +  L+ +IR+ 
Sbjct: 131 YVPGCPPTPEAVIYAVQKLRDRIRKE 156


>gi|328952909|ref|YP_004370243.1| NAD(P)H-quinone oxidoreductase subunit K [Desulfobacca acetoxidans
           DSM 11109]
 gi|328453233|gb|AEB09062.1| NAD(P)H-quinone oxidoreductase subunit K [Desulfobacca acetoxidans
           DSM 11109]
          Length = 162

 Score =  201 bits (511), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 74/159 (46%), Positives = 106/159 (66%), Gaps = 3/159 (1%)

Query: 29  ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APR 87
           +  +          +++++   R  SL  +TFGLACCA+EMM A   R+DL+RFG    R
Sbjct: 1   MEKKTGEPLIQFAVLEEVLNLCRANSLWPITFGLACCAIEMMAAGASRFDLDRFGAGVFR 60

Query: 88  ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY--HYSYSVVRG 145
            SPRQSD+MIVAGT++ KMA  + R+Y+QMP P++VI+MG+CA  GG +     Y++V G
Sbjct: 61  PSPRQSDLMIVAGTISKKMADPVIRLYEQMPAPKWVIAMGNCAISGGPFLYEGQYAIVPG 120

Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
            D+I+PVD+YVPGCPP  E L+ GIL L++KI     ++
Sbjct: 121 ADQIIPVDVYVPGCPPRPEGLLEGILQLEEKITNRPRLR 159


>gi|227535970|ref|ZP_03966019.1| NADH dehydrogenase I, chain B [Sphingobacterium spiritivorum ATCC
           33300]
 gi|227244213|gb|EEI94228.1| NADH dehydrogenase I, chain B [Sphingobacterium spiritivorum ATCC
           33300]
          Length = 184

 Score =  201 bits (511), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 68/160 (42%), Positives = 102/160 (63%), Gaps = 2/160 (1%)

Query: 22  VDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLER 81
            +   +     +   GF  T++D+ +  AR  SL  + F  +CC +E M      YDL R
Sbjct: 2   SNVKLAEAPPGVEGSGFFATTLDKAIGLARANSLWPLPFATSCCGIEFMATMGSTYDLAR 61

Query: 82  FGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSY 140
           FG   P  SPRQ+D+++V GT+  KMA  L++VY QM EPR+VI++G+CA+ GG +  +Y
Sbjct: 62  FGAERPSFSPRQADMLLVMGTIAKKMAPVLKQVYVQMAEPRWVIAVGACASSGGIF-DTY 120

Query: 141 SVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           SV++G D I+PVD+YVPGCPP  EA++ G+L LQ+ ++  
Sbjct: 121 SVLQGIDEIIPVDVYVPGCPPRPEAILDGVLRLQEIVKNE 160


>gi|300723691|ref|YP_003712998.1| NADH dehydrogenase I subunit B [Xenorhabdus nematophila ATCC 19061]
 gi|297630215|emb|CBJ90866.1| NADH dehydrogenase I chain B [Xenorhabdus nematophila ATCC 19061]
          Length = 224

 Score =  201 bits (511), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 74/172 (43%), Positives = 105/172 (61%), Gaps = 5/172 (2%)

Query: 14  QSSCSLEKVDADFSRISSEITHK---GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMM 70
                L+K +     +   +      G L  ++  +V W R  SL    FGL+CC VEM+
Sbjct: 14  NDRYPLQKQEIVSDPLEQHVHRSVYMGKLENALHDMVNWGRKNSLWPYNFGLSCCYVEMV 73

Query: 71  QASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSC 129
            +    +D+ RFG    RASPRQ+D M+++GT   KMA  ++R+YDQM EP++VISMG+C
Sbjct: 74  TSFTAVHDVARFGAEVLRASPRQADFMVISGTCFVKMAPVIQRLYDQMLEPKWVISMGAC 133

Query: 130 ANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
           AN GG Y   YSVV+G D+ +PVD+Y+PGCPP  EA +  +LLLQ+ I +  
Sbjct: 134 ANSGGMY-DIYSVVQGVDKFIPVDVYIPGCPPRPEAYMQALLLLQESIGKER 184


>gi|197121687|ref|YP_002133638.1| NADH dehydrogenase subunit B [Anaeromyxobacter sp. K]
 gi|220916483|ref|YP_002491787.1| NADH-quinone oxidoreductase, B subunit [Anaeromyxobacter
           dehalogenans 2CP-1]
 gi|238065005|sp|B4UIA4|NUOB1_ANASK RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName:
           Full=NADH dehydrogenase I subunit B 1; AltName:
           Full=NDH-1 subunit B 1
 gi|196171536|gb|ACG72509.1| NADH-quinone oxidoreductase, B subunit [Anaeromyxobacter sp. K]
 gi|219954337|gb|ACL64721.1| NADH-quinone oxidoreductase, B subunit [Anaeromyxobacter
           dehalogenans 2CP-1]
          Length = 173

 Score =  201 bits (511), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 83/139 (59%), Positives = 104/139 (74%)

Query: 40  VTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVA 99
            + +D L+  AR  SL ++TFGLACC +E+MQ   PR D+ RFG  PRASPRQ+D MIVA
Sbjct: 18  TSQLDNLINLARASSLYYLTFGLACCGIELMQTGGPRADVMRFGAIPRASPRQADFMIVA 77

Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGC 159
           GTLT KMA   R +YDQMPEP+YVISMGSC+N GG +   YSV +G D+++PVD+YVPGC
Sbjct: 78  GTLTYKMAERARLLYDQMPEPKYVISMGSCSNCGGLFQLGYSVCKGVDKVIPVDVYVPGC 137

Query: 160 PPTAEALIYGILLLQKKIR 178
           PP  EAL  G+L LQ+ +R
Sbjct: 138 PPRPEALTEGLLRLQEIVR 156


>gi|99034974|ref|ZP_01314777.1| hypothetical protein Wendoof_01000400 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
          Length = 161

 Score =  201 bits (511), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 99/130 (76%), Positives = 111/130 (85%), Gaps = 4/130 (3%)

Query: 35  HKGFLVTSV----DQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP 90
            +GFLVT      D ++ WAR+GSL  MTFGLACCAVEMM  +  RYDL+R+G   RASP
Sbjct: 16  KEGFLVTKFGDLTDYVMNWARSGSLWPMTFGLACCAVEMMHTASSRYDLDRYGIMFRASP 75

Query: 91  RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150
           RQSDVMIVAGTLTNKMA+ALR+VYDQM +P+YVISMGSCANGGGYYHYSYSVVRGCDRIV
Sbjct: 76  RQSDVMIVAGTLTNKMAAALRKVYDQMADPKYVISMGSCANGGGYYHYSYSVVRGCDRIV 135

Query: 151 PVDIYVPGCP 160
           PVD+YVPGCP
Sbjct: 136 PVDVYVPGCP 145


>gi|22002572|gb|AAM82723.1| NdhK [Synechococcus elongatus PCC 7942]
          Length = 235

 Score =  200 bits (510), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 61/163 (37%), Positives = 94/163 (57%), Gaps = 1/163 (0%)

Query: 16  SCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMP 75
           +   E  +       ++   +  ++T++D L  WAR  SL  + +G ACC +E       
Sbjct: 4   TNPAEIRNPAAPPEITQGLSENVILTTLDDLYNWARLSSLWPLMYGTACCFIEFAALIGS 63

Query: 76  RYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY 135
           R+D +RF +    +     V      +T KMA AL R+Y+QMPEP+YVI+MG+C   GG 
Sbjct: 64  RFDFDRFAWCLVVASAGRFVDHKPVPVTMKMAPALVRLYEQMPEPKYVIAMGACTITGGM 123

Query: 136 YH-YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
           +   S + VRG D+++PVD+Y+PGCPP  EA+I  I+ L+KK+
Sbjct: 124 FSADSTTTVRGVDKLLPVDVYIPGCPPRPEAIIDAIVKLRKKV 166


>gi|95928469|ref|ZP_01311217.1| NADH-quinone oxidoreductase, B subunit [Desulfuromonas acetoxidans
           DSM 684]
 gi|95135740|gb|EAT17391.1| NADH-quinone oxidoreductase, B subunit [Desulfuromonas acetoxidans
           DSM 684]
          Length = 196

 Score =  200 bits (510), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 78/137 (56%), Positives = 101/137 (73%), Gaps = 3/137 (2%)

Query: 44  DQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQSDVMIVAGTL 102
           D+++   R  SL  MTFGLACCA+EMM + M R+D+ R+G    R SPRQSD+MIVAGT+
Sbjct: 44  DKILNLCRANSLWPMTFGLACCAIEMMCSGMARFDISRYGAEVFRPSPRQSDLMIVAGTV 103

Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH--YSYSVVRGCDRIVPVDIYVPGCP 160
             KMA A+  +Y+QMP PRYVI++G+CA  GG +    +Y VV G D+++PVD+YVPGCP
Sbjct: 104 NKKMAPAVVTLYEQMPAPRYVIALGNCAISGGPFAVEANYDVVLGVDQLIPVDVYVPGCP 163

Query: 161 PTAEALIYGILLLQKKI 177
           P  EALI GIL LQ+KI
Sbjct: 164 PRPEALIEGILQLQEKI 180


>gi|145592956|ref|YP_001157253.1| NADH-quinone oxidoreductase, B subunit [Salinispora tropica
           CNB-440]
 gi|238065020|sp|A4X1X5|NUOB1_SALTO RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName:
           Full=NADH dehydrogenase I subunit B 1; AltName:
           Full=NDH-1 subunit B 1
 gi|145302293|gb|ABP52875.1| NADH-quinone oxidoreductase, B subunit [Salinispora tropica
           CNB-440]
          Length = 188

 Score =  200 bits (510), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 77/133 (57%), Positives = 102/133 (76%), Gaps = 1/133 (0%)

Query: 46  LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS-PRQSDVMIVAGTLTN 104
           ++ W R  SL    FGLACCA+E +  SM R+D  R G  P A  PRQ+D+M+V+GT+T+
Sbjct: 14  VLNWGRRYSLWVFNFGLACCAIEFIATSMSRHDFMRLGVIPFAHGPRQADLMVVSGTVTD 73

Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164
           KMA A++R+YDQMPEP+YVIS G+C+N GG Y  SYSV +G D+++PVD+YVPGCPP  E
Sbjct: 74  KMAPAIKRLYDQMPEPKYVISFGACSNCGGPYWDSYSVTKGVDQLIPVDVYVPGCPPRPE 133

Query: 165 ALIYGILLLQKKI 177
           AL++GIL LQ+KI
Sbjct: 134 ALLHGILRLQEKI 146


>gi|238753753|ref|ZP_04615114.1| NADH-quinone oxidoreductase subunit B [Yersinia ruckeri ATCC 29473]
 gi|238707989|gb|EEQ00346.1| NADH-quinone oxidoreductase subunit B [Yersinia ruckeri ATCC 29473]
          Length = 225

 Score =  200 bits (510), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 77/176 (43%), Positives = 111/176 (63%), Gaps = 6/176 (3%)

Query: 7   NQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCA 66
           ++  +  Q + S + ++ D  R      + G L  ++  +V W R  SL    FGL+CC 
Sbjct: 15  DRYPLQSQETISGDPLEQDIHR----SVYMGKLEHAMHDMVNWGRKNSLWPYNFGLSCCY 70

Query: 67  VEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVIS 125
           VEM+ +    +D+ RFG    RASPRQ+D M+VAGT   KMA  ++R+Y+QM EP++VIS
Sbjct: 71  VEMVTSFTAVHDVARFGAEVLRASPRQADFMVVAGTCFTKMAPVIQRLYEQMLEPKWVIS 130

Query: 126 MGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
           MG+CAN GG Y   YSVV+G D+ +PVD+Y+PGCPP  EA +  +LLLQ+ I +  
Sbjct: 131 MGACANSGGMY-DIYSVVQGVDKFLPVDVYIPGCPPRPEAYMQALLLLQESIGKER 185


>gi|71892265|ref|YP_277999.1| NADH dehydrogenase subunit B [Candidatus Blochmannia pennsylvanicus
           str. BPEN]
 gi|123640866|sp|Q492H7|NUOB_BLOPB RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|71796371|gb|AAZ41122.1| NADH dehydrogenase I chain B, binds FeS cluster N2 [Candidatus
           Blochmannia pennsylvanicus str. BPEN]
          Length = 236

 Score =  200 bits (510), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 78/174 (44%), Positives = 103/174 (59%), Gaps = 5/174 (2%)

Query: 12  SGQSSCSLEKVDADFSRISSEITHK---GFLVTSVDQLVTWARTGSLMWMTFGLACCAVE 68
           S      L++       +   I      G L   + ++V W R  SL    FGL+CC VE
Sbjct: 13  SEDEQYPLQEKKIVTDPLEKNIQRNVFFGKLSAFLHKIVNWGRGNSLWPYNFGLSCCYVE 72

Query: 69  MMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMG 127
           M  A    +D+ RFG    RASPRQ+D M++AGT   KM   ++R+YDQM EP++VISMG
Sbjct: 73  MTTAFTAIHDVARFGSEVLRASPRQADFMVIAGTPFLKMVPVIQRLYDQMLEPKWVISMG 132

Query: 128 SCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
           +CAN GG Y   YSVV+G D+ +PVD+Y+PGCPP  EA I G+LLL+K I    
Sbjct: 133 ACANSGGMY-DIYSVVQGVDKFLPVDLYIPGCPPRPEAYIQGLLLLKKSINEER 185


>gi|156933123|ref|YP_001437039.1| NADH dehydrogenase subunit B [Cronobacter sakazakii ATCC BAA-894]
 gi|260598704|ref|YP_003211275.1| NADH dehydrogenase subunit B [Cronobacter turicensis z3032]
 gi|238065141|sp|A7MH23|NUOB_ENTS8 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|156531377|gb|ABU76203.1| hypothetical protein ESA_00933 [Cronobacter sakazakii ATCC BAA-894]
 gi|260217881|emb|CBA32432.1| NADH-quinone oxidoreductase subunit B [Cronobacter turicensis
           z3032]
          Length = 224

 Score =  200 bits (510), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 75/172 (43%), Positives = 105/172 (61%), Gaps = 5/172 (2%)

Query: 14  QSSCSLEKVDADFSRISSEITHK---GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMM 70
                L+K +     +   +      G L  ++  +V W R  SL    FGL+CC VEM+
Sbjct: 14  NDRYPLQKQEIVTDPLEQHVHRSVYMGKLEHALHDMVNWGRKNSLWPYNFGLSCCYVEMV 73

Query: 71  QASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSC 129
            +    +D+ RFG    RASPRQ+D M+VAGT   KMA  ++R+YDQM EP++VISMG+C
Sbjct: 74  TSFTAVHDVARFGAEVLRASPRQADFMVVAGTPFTKMAPVIQRLYDQMLEPKWVISMGAC 133

Query: 130 ANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
           AN GG Y   YSVV+G D+ +PVD+Y+PGCPP  EA +  ++LLQ+ I +  
Sbjct: 134 ANSGGMY-DIYSVVQGVDKFLPVDVYIPGCPPRPEAYMQALMLLQESIGKER 184


>gi|269926648|ref|YP_003323271.1| NADH-quinone oxidoreductase, B subunit [Thermobaculum terrenum ATCC
           BAA-798]
 gi|269790308|gb|ACZ42449.1| NADH-quinone oxidoreductase, B subunit [Thermobaculum terrenum ATCC
           BAA-798]
          Length = 175

 Score =  200 bits (510), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 87/144 (60%), Positives = 106/144 (73%), Gaps = 2/144 (1%)

Query: 37  GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD-LERFGFAPRASPRQSDV 95
             L  +   +  WAR  SL  MTFGLACCA+EMM AS   YD +ER G   R SPRQSD+
Sbjct: 13  NLLEATQRAIFGWARKSSLWPMTFGLACCAIEMMSASAANYDVMERSGMLFRPSPRQSDL 72

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
           MIVAG++T KMA  LRR+YDQMP+P++VISMGSCA+ GG Y  +YS ++G D++VPVD+Y
Sbjct: 73  MIVAGSVTLKMAPVLRRLYDQMPDPKWVISMGSCASAGGPYP-TYSHLQGVDKVVPVDVY 131

Query: 156 VPGCPPTAEALIYGILLLQKKIRR 179
           VPGCPP  EAL YGIL LQ  I+R
Sbjct: 132 VPGCPPVPEALFYGILQLQGMIQR 155


>gi|238061184|ref|ZP_04605893.1| NADH-quinone oxidoreductase, B subunit [Micromonospora sp. ATCC
           39149]
 gi|237882995|gb|EEP71823.1| NADH-quinone oxidoreductase, B subunit [Micromonospora sp. ATCC
           39149]
          Length = 204

 Score =  200 bits (510), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 76/133 (57%), Positives = 102/133 (76%), Gaps = 1/133 (0%)

Query: 46  LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS-PRQSDVMIVAGTLTN 104
           ++ W R  SL    FGLACCA+E +  SM R+D  R G  P A  PRQ+D+M+V+GT+T+
Sbjct: 14  VLNWGRRYSLWVFNFGLACCAIEFIATSMGRHDFIRLGVIPFAHGPRQADLMVVSGTVTD 73

Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164
           KMA A++R+Y+QMPEP+YVIS G+C+N GG Y  SYSV +G D+++PVD+YVPGCPP  E
Sbjct: 74  KMAPAIKRLYEQMPEPKYVISFGACSNCGGPYWDSYSVTKGVDQLIPVDVYVPGCPPRPE 133

Query: 165 ALIYGILLLQKKI 177
           AL++GIL LQ+KI
Sbjct: 134 ALLHGILRLQEKI 146


>gi|33519943|ref|NP_878775.1| NADH dehydrogenase subunit B [Candidatus Blochmannia floridanus]
 gi|81666912|sp|Q7VRV3|NUOB_BLOFL RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|33504289|emb|CAD83181.1| NADH dehydrogenase I chain B [Candidatus Blochmannia floridanus]
          Length = 223

 Score =  200 bits (510), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 81/182 (44%), Positives = 107/182 (58%), Gaps = 2/182 (1%)

Query: 1   MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTF 60
           + L   NQ   S       + V     +   +  + G L   + + V W R+ SL    F
Sbjct: 5   LTLARTNQDDDSVYPEQDQKPVADPLDKQIEKNVYFGKLKNLLHKAVNWGRSNSLWPYNF 64

Query: 61  GLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119
           GL+CC VEM  A    +D+ RFG    R+SPRQSD M++AGT   KM   ++R+YDQM E
Sbjct: 65  GLSCCYVEMTTAFTAVHDVARFGSEVLRSSPRQSDFMVIAGTPFLKMVPIIQRLYDQMLE 124

Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           P++VISMGSCAN GG Y   YSVV+G D+ +PVDIY+PGCPP  EA I  +LLL+K I +
Sbjct: 125 PKWVISMGSCANSGGMY-DIYSVVQGVDKFLPVDIYIPGCPPRPEAYIQALLLLKKSINK 183

Query: 180 VG 181
             
Sbjct: 184 ER 185


>gi|325105666|ref|YP_004275320.1| NADH dehydrogenase subunit B [Pedobacter saltans DSM 12145]
 gi|324974514|gb|ADY53498.1| NADH dehydrogenase subunit B [Pedobacter saltans DSM 12145]
          Length = 180

 Score =  200 bits (510), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 67/164 (40%), Positives = 103/164 (62%), Gaps = 2/164 (1%)

Query: 22  VDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLER 81
            D   +   + +   GF  T++DQ++  AR+ SL  + F  +CC +E M      YD  R
Sbjct: 2   SDIKMANAPAGVEGSGFFATTLDQVIGLARSHSLWPLPFATSCCGIEFMATMGAHYDFSR 61

Query: 82  FGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSY 140
           FG   P  SPRQ+D+++V GT+  KMA  L++VY QM EPR+VI++G+CA+ GG +  +Y
Sbjct: 62  FGSERPSFSPRQADLLMVMGTIAKKMAPVLKQVYTQMAEPRWVIAVGACASSGGIF-DTY 120

Query: 141 SVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           SV++G D I+PVD+YVPGCPP  E +I G   +Q+ ++   + +
Sbjct: 121 SVLQGIDEIIPVDVYVPGCPPRPEGIIDGFNKIQELVKNESSRR 164


>gi|330834139|ref|YP_004408867.1| NADH-quinone oxidoreductase, B subunit [Metallosphaera cuprina
           Ar-4]
 gi|329566278|gb|AEB94383.1| NADH-quinone oxidoreductase, B subunit [Metallosphaera cuprina
           Ar-4]
          Length = 170

 Score =  200 bits (509), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 68/163 (41%), Positives = 94/163 (57%)

Query: 22  VDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLER 81
           +  +    + +          +  L  W  + SL    F  +CC  E    +  R+D ER
Sbjct: 7   LTGNLDESARKAAEWLLNKKPIRTLRDWGISFSLWPPHFTTSCCGTEFGAFAAARFDAER 66

Query: 82  FGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYS 141
           FG  P AS RQS+++ + GTLT KMA A R VYDQMPEP+YVI+MG+C   GG +  SY+
Sbjct: 67  FGMLPFASSRQSNILTIEGTLTRKMARAARIVYDQMPEPKYVIAMGACILEGGIFWNSYN 126

Query: 142 VVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
            V   D  +PVD+Y+PGCP   EA+  G+L+LQKKIR  G ++
Sbjct: 127 TVLPSDVGIPVDLYIPGCPIRPEAIARGLLMLQKKIRSQGAIR 169


>gi|238920566|ref|YP_002934081.1| NADH dehydrogenase subunit B [Edwardsiella ictaluri 93-146]
 gi|269139729|ref|YP_003296430.1| NADH:ubiquinone oxidoreductase 20 kD subunit and related Fe-S
           oxidoreductase [Edwardsiella tarda EIB202]
 gi|259514663|sp|C5B8I5|NUOB_EDWI9 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|238870135|gb|ACR69846.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146]
 gi|267985390|gb|ACY85219.1| NADH:ubiquinone oxidoreductase 20 kD subunit and related Fe-S
           oxidoreductase [Edwardsiella tarda EIB202]
 gi|304559596|gb|ADM42260.1| NADH-ubiquinone oxidoreductase chain B [Edwardsiella tarda FL6-60]
          Length = 224

 Score =  200 bits (509), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 74/173 (42%), Positives = 105/173 (60%), Gaps = 5/173 (2%)

Query: 13  GQSSCSLEKVDADFSRISSEITHK---GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEM 69
                 L+K +     +   +      G L  ++  +V W R  SL    FGL+CC VEM
Sbjct: 13  DNDRYPLQKQEVVSDPLEQHVHRSVYMGKLDHALHDMVNWGRKNSLWPYNFGLSCCYVEM 72

Query: 70  MQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGS 128
           + +    +D+ RFG    RASPRQ+D M+VAGT   KMA  ++R+Y+QM EP++VISMG+
Sbjct: 73  VTSFTAVHDVARFGAEVLRASPRQADFMVVAGTCFTKMAPVIQRLYEQMLEPKWVISMGA 132

Query: 129 CANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
           CAN GG Y   YSVV+G D+ +PVD+Y+PGCPP  EA +  ++LLQ+ I +  
Sbjct: 133 CANSGGMY-DIYSVVQGVDKFIPVDVYIPGCPPRPEAYMQALMLLQESIGQER 184


>gi|269128582|ref|YP_003301952.1| NADH-quinone oxidoreductase subunit B [Thermomonospora curvata DSM
           43183]
 gi|268313540|gb|ACY99914.1| NADH-quinone oxidoreductase, B subunit [Thermomonospora curvata DSM
           43183]
          Length = 323

 Score =  200 bits (509), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 76/138 (55%), Positives = 101/138 (73%), Gaps = 1/138 (0%)

Query: 41  TSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR-ASPRQSDVMIVA 99
             +  ++ W R  SL    FGLACCA+E + ASM R+D  R G  P    PRQ+D+M+V+
Sbjct: 20  KPIKFVLNWGRRYSLWVFNFGLACCAIEFIAASMSRHDFIRLGVIPFAPGPRQADLMVVS 79

Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGC 159
           GT+T+KMA A+RR+Y+QMPEP+YVIS G+C+N GG Y  SY V +G D+I+PVD+YVPGC
Sbjct: 80  GTVTDKMAPAVRRLYEQMPEPKYVISFGACSNCGGPYWDSYCVTKGVDQIIPVDVYVPGC 139

Query: 160 PPTAEALIYGILLLQKKI 177
           PP  EAL+ GI+ LQ+KI
Sbjct: 140 PPRPEALLQGIVRLQEKI 157


>gi|21750696|dbj|BAC03820.1| unnamed protein product [Homo sapiens]
          Length = 213

 Score =  200 bits (509), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 108/166 (65%), Positives = 121/166 (72%), Gaps = 7/166 (4%)

Query: 3   LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62
           LT      +   +  +L K  A   + SS      ++V  +D LV WAR  SL  MTFGL
Sbjct: 37  LTPPVPVCLCASTQPALPKARAVAPKPSS---RGEYVVAKLDDLVNWARRSSLWPMTFGL 93

Query: 63  ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122
           ACCAVEMM  + PRYD++RFG   RASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRY
Sbjct: 94  ACCAVEMMHMAAPRYDMDRFGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRY 153

Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPG----CPPTAE 164
           V+SMGSCANGGGYYHYSYSVVRGCDRIVPVDIY+PG     PPT E
Sbjct: 154 VVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYIPGRAGTAPPTRE 199


>gi|90579190|ref|ZP_01235000.1| NADH dehydrogenase beta subunit [Vibrio angustum S14]
 gi|90440023|gb|EAS65204.1| NADH dehydrogenase beta subunit [Vibrio angustum S14]
          Length = 183

 Score =  200 bits (509), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 77/141 (54%), Positives = 104/141 (73%), Gaps = 2/141 (1%)

Query: 39  LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMI 97
           +V  VD L++++R  SL    FG +CC VEMM A+ PRYD+ RFG    R SPRQSDV+I
Sbjct: 25  IVGKVDDLISYSRKHSLWPYNFGTSCCFVEMMTAATPRYDMARFGSEVLRGSPRQSDVLI 84

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
            AGT   KMA  ++ +YDQM EP++VISMGSC+N GG Y   YSVV+G D+I+PVD+YVP
Sbjct: 85  TAGTCFVKMAPLMKHIYDQMLEPKWVISMGSCSNSGGMY-DIYSVVQGVDKILPVDVYVP 143

Query: 158 GCPPTAEALIYGILLLQKKIR 178
           GCPP  +AL+ G+++LQ+ ++
Sbjct: 144 GCPPRPDALLEGLIMLQEHVQ 164


>gi|225164240|ref|ZP_03726513.1| NADH dehydrogenase (quinone) [Opitutaceae bacterium TAV2]
 gi|224801145|gb|EEG19468.1| NADH dehydrogenase (quinone) [Opitutaceae bacterium TAV2]
          Length = 178

 Score =  200 bits (509), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 74/164 (45%), Positives = 110/164 (67%), Gaps = 4/164 (2%)

Query: 22  VDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLER 81
            + DF+  S        ++++ D ++ W R+ S+  M  GLACC +E+M     R+D+ R
Sbjct: 4   ANKDFACDSK--IEGNVVISTADAVINWIRSNSIWPMPMGLACCGIELMGVGGARFDISR 61

Query: 82  FGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSY 140
           FG    R SPRQ D MIVAGT+T KMAS +RR+YDQM EP++VI+MG+CA+ GG Y  SY
Sbjct: 62  FGAEVMRFSPRQCDCMIVAGTVTYKMASHVRRIYDQMAEPKWVIAMGACASSGGMYR-SY 120

Query: 141 SVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           + ++G DRI+PVD+Y+ GCPP  EA++  ++ +Q+KI+R    +
Sbjct: 121 ATLQGVDRIIPVDVYISGCPPRPEAVLDALVKMQEKIKRTPATR 164


>gi|89073316|ref|ZP_01159846.1| NADH dehydrogenase beta subunit [Photobacterium sp. SKA34]
 gi|89051026|gb|EAR56490.1| NADH dehydrogenase beta subunit [Photobacterium sp. SKA34]
          Length = 183

 Score =  200 bits (509), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 77/141 (54%), Positives = 104/141 (73%), Gaps = 2/141 (1%)

Query: 39  LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMI 97
           +V  VD L++++R  SL    FG +CC VEMM A+ PRYD+ RFG    R SPRQSDV+I
Sbjct: 25  IVGKVDDLISYSRKHSLWPYNFGTSCCFVEMMTAATPRYDMARFGSEVLRGSPRQSDVLI 84

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
            AGT   KMA  ++ +YDQM EP++VISMGSC+N GG Y   YSVV+G D+I+PVD+YVP
Sbjct: 85  TAGTCFVKMAPLMKHIYDQMLEPKWVISMGSCSNSGGMY-DIYSVVQGVDKILPVDVYVP 143

Query: 158 GCPPTAEALIYGILLLQKKIR 178
           GCPP  +AL+ G+++LQ+ ++
Sbjct: 144 GCPPRPDALLEGLIMLQEHVQ 164


>gi|311896699|dbj|BAJ29107.1| putative NADH-quinone oxidoreductase subunit B [Kitasatospora setae
           KM-6054]
          Length = 209

 Score =  200 bits (509), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 79/137 (57%), Positives = 102/137 (74%), Gaps = 1/137 (0%)

Query: 42  SVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR-ASPRQSDVMIVAG 100
            V  ++ W R  SL    FGLACCA+E + ASM ++D  R G  P    PRQ+D+MIV+G
Sbjct: 44  PVKVVLNWGRRYSLWCFNFGLACCAIEFIAASMAKHDFIRMGVIPFAPGPRQADLMIVSG 103

Query: 101 TLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCP 160
           T+T+KMA A++R+Y+QMPEP+YVIS G+CAN GG Y  SYSV +G D+I+PVD+YVPGCP
Sbjct: 104 TVTDKMAPAVKRLYEQMPEPKYVISFGACANSGGPYWDSYSVTKGVDQIIPVDVYVPGCP 163

Query: 161 PTAEALIYGILLLQKKI 177
           P  EAL+ GIL LQ+KI
Sbjct: 164 PRPEALLQGILKLQEKI 180


>gi|317050795|ref|YP_004111911.1| NADH-quinone oxidoreductase subunit B [Desulfurispirillum indicum
           S5]
 gi|316945879|gb|ADU65355.1| NADH-quinone oxidoreductase, B subunit [Desulfurispirillum indicum
           S5]
          Length = 208

 Score =  200 bits (508), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 64/151 (42%), Positives = 103/151 (68%), Gaps = 1/151 (0%)

Query: 35  HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQS 93
            +G ++T+++++  W R+ SL  +++  ACC +EM+ +S P++D+ RFG    RASPRQ+
Sbjct: 24  SQGVIITTLEKVYNWGRSNSLWPLSYATACCGIEMISSSCPQHDIARFGSEVFRASPRQA 83

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD 153
           D+MI+AGT+T KM   +  +++Q+ EP+Y I+MG+C   GG + YS SVV      +P+D
Sbjct: 84  DLMILAGTITKKMMPQVVTLWEQIAEPKYAIAMGNCVITGGIFKYSPSVVANVPDYIPID 143

Query: 154 IYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           +++PGC P  EAL  GI+ LQ +IRR   +K
Sbjct: 144 VFIPGCAPRPEALFNGIITLQHQIRRQKMLK 174


>gi|238897506|ref|YP_002923185.1| NADH dehydrogenase I chain B, binds FeS cluster N2 [Candidatus
           Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
 gi|229465263|gb|ACQ67037.1| NADH dehydrogenase I chain B, binds FeS cluster N2 [Candidatus
           Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
          Length = 226

 Score =  200 bits (508), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 73/159 (45%), Positives = 99/159 (62%), Gaps = 2/159 (1%)

Query: 24  ADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFG 83
                 +    + G L  ++   V W R  SL    FGL+CC VEM+ +    +D+ RFG
Sbjct: 29  DPLDEQAHRNIYMGKLEHALHDTVNWGRKNSLWPYNFGLSCCYVEMVTSFTAVHDVARFG 88

Query: 84  FAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142
               RASPRQ+D M+VAGT   KMA  ++R+YDQM EP++VISMG+CAN GG Y   YSV
Sbjct: 89  AEVLRASPRQADFMVVAGTCFTKMAPVIQRLYDQMLEPKWVISMGACANSGGMY-DIYSV 147

Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
           V+G D+ +PVD+Y+PGCPP  EA +  + LLQ+ I +  
Sbjct: 148 VQGVDKFLPVDVYIPGCPPRPEAYMQALFLLQESIGKER 186


>gi|330470216|ref|YP_004407959.1| NADH-quinone oxidoreductase subunit B [Verrucosispora maris
           AB-18-032]
 gi|328813187|gb|AEB47359.1| NADH-quinone oxidoreductase, B subunit [Verrucosispora maris
           AB-18-032]
          Length = 197

 Score =  200 bits (508), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 77/133 (57%), Positives = 102/133 (76%), Gaps = 1/133 (0%)

Query: 46  LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS-PRQSDVMIVAGTLTN 104
           ++ W R  SL    FGLACCA+E +  SM R+D  R G  P A  PRQ+D+M+V+GT+T+
Sbjct: 14  VLNWGRRYSLWVFNFGLACCAIEFIATSMSRHDFMRLGVIPFAHGPRQADLMVVSGTVTD 73

Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164
           KMA A++R+YDQMPEP+YVIS G+C+N GG Y  SYSV +G D+++PVD+YVPGCPP  E
Sbjct: 74  KMAPAIKRLYDQMPEPKYVISFGACSNCGGPYWDSYSVTKGVDQLIPVDVYVPGCPPRPE 133

Query: 165 ALIYGILLLQKKI 177
           AL++GIL LQ+KI
Sbjct: 134 ALLHGILRLQEKI 146


>gi|291618188|ref|YP_003520930.1| NuoB [Pantoea ananatis LMG 20103]
 gi|291153218|gb|ADD77802.1| NuoB [Pantoea ananatis LMG 20103]
 gi|327394581|dbj|BAK12003.1| NADH-quinone oxidoreductase chain B NuoB [Pantoea ananatis AJ13355]
          Length = 225

 Score =  200 bits (508), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 75/172 (43%), Positives = 104/172 (60%), Gaps = 5/172 (2%)

Query: 14  QSSCSLEKVDADFSRISSEITHK---GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMM 70
                L+K +     +   +      G L  ++  +V W R  SL    FGL+CC VEM 
Sbjct: 15  NDRYPLQKQEIVSDPLEQHVHRSVYMGKLEHALHDMVNWGRKNSLWPYNFGLSCCYVEMT 74

Query: 71  QASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSC 129
            +    +D+ RFG    RASPRQ+D M++AGT   KMA  ++R+YDQM EP++VISMG+C
Sbjct: 75  TSFTAVHDVARFGAEVMRASPRQADFMVIAGTPFTKMAPVIQRLYDQMLEPKWVISMGAC 134

Query: 130 ANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
           AN GG Y   YSVV+G D+ +PVD+Y+PGCPP  EA +  +LLLQ+ I +  
Sbjct: 135 ANSGGMY-DIYSVVQGVDKFLPVDVYIPGCPPRPEAYMQALLLLQESIGKER 185


>gi|149374626|ref|ZP_01892400.1| NADH dehydrogenase subunit B [Marinobacter algicola DG893]
 gi|149361329|gb|EDM49779.1| NADH dehydrogenase subunit B [Marinobacter algicola DG893]
          Length = 225

 Score =  200 bits (508), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 78/183 (42%), Positives = 107/183 (58%), Gaps = 6/183 (3%)

Query: 3   LTTVNQKIISGQSSCSLEKVDADFSRISSEITHK---GFLVTSVDQLVTWARTGSLMWMT 59
           LT      + G +   + + +     +  ++      G L   ++  V W R  SL    
Sbjct: 5   LTRAEPSPV-GDTQYPIRQQEPSEDPVKRQLERNVFTGKLSDVLNSAVNWGRKNSLWPYN 63

Query: 60  FGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMP 118
           FGL+CC VEM  A    +D+ RFG    RASPRQ+D M++AGT   KMA  ++++YDQM 
Sbjct: 64  FGLSCCYVEMTTAFTAPHDIARFGSEVIRASPRQADFMVIAGTCFIKMAPVIQQLYDQML 123

Query: 119 EPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           EP++VISMGSCAN GG Y   YSVV+G D+ +PVD+YVPGCPP  EA + G+ LLQ  I+
Sbjct: 124 EPKWVISMGSCANSGGMY-DIYSVVQGVDKFLPVDVYVPGCPPRPEAFLQGLQLLQDSIQ 182

Query: 179 RVG 181
              
Sbjct: 183 EER 185


>gi|257051791|ref|YP_003129624.1| NADH-quinone oxidoreductase, B subunit [Halorhabdus utahensis DSM
           12940]
 gi|256690554|gb|ACV10891.1| NADH-quinone oxidoreductase, B subunit [Halorhabdus utahensis DSM
           12940]
          Length = 231

 Score =  200 bits (508), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 79/168 (47%), Positives = 113/168 (67%), Gaps = 2/168 (1%)

Query: 12  SGQSSCSLEKVDADF-SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMM 70
           S + +   E VD  F SR+   +    F++T  DQ + WAR  S+  + FG+ACC++EMM
Sbjct: 15  STREARMGEGVDDRFNSRLREALGSTPFILTKFDQFMNWARGSSMFMLQFGIACCSIEMM 74

Query: 71  QASMPRYDLERFGF-APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSC 129
                ++DL+RF    PRASPRQ+DVMIV GT+ +K A  ++RVYDQ+PEP++ I MGSC
Sbjct: 75  HTYSVKHDLDRFHAGVPRASPRQADVMIVPGTIVSKFAPRMKRVYDQVPEPKFTIGMGSC 134

Query: 130 ANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
              GG +   Y+VV+G + ++P+DI +PGCPP  EALIYG+  LQ++I
Sbjct: 135 TISGGPFQEGYNVVKGAEEVIPIDIQIPGCPPRPEALIYGVAKLQERI 182


>gi|73544267|ref|XP_848028.1| NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial
           precursor [Leishmania major strain Friedlin]
 gi|146094718|ref|XP_001467361.1| NADH-ubiquinone oxidoreductase [Leishmania infantum JPCM5]
 gi|321398434|emb|CBZ08822.1| NADH-ubiquinone oxidoreductase 20 kDa subunit,mitochondrial
           precursor [Leishmania infantum JPCM5]
 gi|321438382|emb|CBZ12134.1| NADH-ubiquinone oxidoreductase 20 kDa subunit,mitochondrial
           precursor [Leishmania major strain Friedlin]
 gi|322492890|emb|CBZ28169.1| NADH-ubiquinone oxidoreductase 20 kDa subunit,mitochondrial
           precursor [Leishmania mexicana MHOM/GT/2001/U1103]
 gi|322500143|emb|CBZ35218.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 201

 Score =  199 bits (507), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 82/137 (59%), Positives = 108/137 (78%)

Query: 42  SVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGT 101
           ++  L  W    S   +TFGLACCAVEMM +   RYDL+RFG  PR SPRQ++++IV+GT
Sbjct: 55  TLHDLTEWVVAYSPWPLTFGLACCAVEMMHSYSSRYDLDRFGIVPRPSPRQAEIIIVSGT 114

Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP 161
           +TNKMA  LR +Y QM  P++VISMGSCANGGGYYH+SY+V+RGC+R +PVD ++PGCPP
Sbjct: 115 VTNKMAPLLRNIYVQMVNPKWVISMGSCANGGGYYHFSYAVLRGCERAIPVDFWIPGCPP 174

Query: 162 TAEALIYGILLLQKKIR 178
           +AE+L++ +  LQKKIR
Sbjct: 175 SAESLVFCLHNLQKKIR 191


>gi|294637178|ref|ZP_06715486.1| NADH dehydrogenase I subunit B [Edwardsiella tarda ATCC 23685]
 gi|291089642|gb|EFE22203.1| NADH dehydrogenase I subunit B [Edwardsiella tarda ATCC 23685]
          Length = 224

 Score =  199 bits (507), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 74/173 (42%), Positives = 105/173 (60%), Gaps = 5/173 (2%)

Query: 13  GQSSCSLEKVDADFSRISSEITHK---GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEM 69
                 L+K +     +   +      G L  ++  +V W R  SL    FGL+CC VEM
Sbjct: 13  DNDRYPLQKQEVVGDPLEQHVHRSVYMGKLDHALHDMVNWGRKNSLWPYNFGLSCCYVEM 72

Query: 70  MQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGS 128
           + +    +D+ RFG    RASPRQ+D M+VAGT   KMA  ++R+Y+QM EP++VISMG+
Sbjct: 73  VTSFTAVHDVARFGAEVLRASPRQADFMVVAGTCFTKMAPVIQRLYEQMLEPKWVISMGA 132

Query: 129 CANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
           CAN GG Y   YSVV+G D+ +PVD+Y+PGCPP  EA +  ++LLQ+ I +  
Sbjct: 133 CANSGGMY-DIYSVVQGVDKFIPVDVYIPGCPPRPEAYMQALMLLQESIGQER 184


>gi|320354161|ref|YP_004195500.1| NADH dehydrogenase subunit B [Desulfobulbus propionicus DSM 2032]
 gi|320122663|gb|ADW18209.1| NADH dehydrogenase subunit B [Desulfobulbus propionicus DSM 2032]
          Length = 170

 Score =  199 bits (507), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 64/149 (42%), Positives = 98/149 (65%), Gaps = 2/149 (1%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RAS 89
                   L T +D ++ W R  SL    FG ACCA+E M A+  + D+ R+G    R S
Sbjct: 6   EASLGDSVLTTKLDAVINWGREYSLWPFVFGTACCAIEFMSAAASQLDISRWGAEVVRFS 65

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQ+D+++V GT++ K A  L+R+Y+QMPEP++V++MG+CA+ GG Y  +Y  V+G D I
Sbjct: 66  PRQADLLLVCGTISYKQAPILKRIYEQMPEPKWVVAMGACASSGGVY-DNYCTVQGIDTI 124

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           +PVD+Y+ GCPP  EA++  ++ +Q KI+
Sbjct: 125 IPVDVYISGCPPRPEAVLDALMKIQDKIK 153


>gi|225850946|ref|YP_002731180.1| NADH dehydrogenase subunit B [Persephonella marina EX-H1]
 gi|225646636|gb|ACO04822.1| NADH-quinone oxidoreductase chain b (nadh dehydrogenasei, chain b)
           (ndh-1, chain b) [Persephonella marina EX-H1]
          Length = 181

 Score =  199 bits (507), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 73/140 (52%), Positives = 108/140 (77%), Gaps = 1/140 (0%)

Query: 35  HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSD 94
           + G ++T+V+++++W R  SL   + GLACCA+EMM  +  R+D +R G   R SPRQSD
Sbjct: 6   NNGIILTTVEEVLSWGRRNSLWPASVGLACCAIEMMHTAASRFDTDRLGIIFRGSPRQSD 65

Query: 95  VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154
           V+IVAGT+ NK+A  L+ +YDQMP+P++VI+MG C++ GG +  +Y+ ++G DRI+PVD+
Sbjct: 66  VLIVAGTVVNKVAPMLKLIYDQMPDPKWVIAMGGCSSAGGPFP-TYATLQGVDRIIPVDV 124

Query: 155 YVPGCPPTAEALIYGILLLQ 174
           YVPGCPPT +AL++GIL LQ
Sbjct: 125 YVPGCPPTPQALLWGILELQ 144


>gi|322831985|ref|YP_004212012.1| NADH-quinone oxidoreductase, B subunit [Rahnella sp. Y9602]
 gi|321167186|gb|ADW72885.1| NADH-quinone oxidoreductase, B subunit [Rahnella sp. Y9602]
          Length = 224

 Score =  199 bits (507), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 78/166 (46%), Positives = 102/166 (61%), Gaps = 2/166 (1%)

Query: 17  CSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPR 76
            S E V              G L  S+  +V W R  SL    FGL+CC VEM+ +    
Sbjct: 20  QSQEVVGDPLQEQVKRSVFMGNLQESLHGMVNWGRKNSLWPYNFGLSCCYVEMVTSFTAV 79

Query: 77  YDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY 135
           +D+ RFG    RASPRQ+D M+VAGT   KMA  ++R+YDQM EP++VISMG+CAN GG 
Sbjct: 80  HDVARFGAEVLRASPRQADFMVVAGTCFTKMAPVIQRLYDQMLEPKWVISMGACANSGGM 139

Query: 136 YHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
           Y   YSVV+G D+ +PVD+Y+PGCPP  EA +  +LLLQ+ I +  
Sbjct: 140 Y-DIYSVVQGVDKFLPVDVYIPGCPPRPEAYMQALLLLQESIGKER 184


>gi|284009321|emb|CBA76481.1| NADH-quinone oxidoreductase chain B [Arsenophonus nasoniae]
          Length = 229

 Score =  199 bits (507), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 74/166 (44%), Positives = 103/166 (62%), Gaps = 2/166 (1%)

Query: 17  CSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPR 76
            + + V     +      + G L  ++  +V W R  SL    FGL+CC VEM+ +    
Sbjct: 25  QTQQVVGDPLEQHVHRSVYMGKLEHALHNMVNWGRKNSLWPYNFGLSCCYVEMVTSFTAV 84

Query: 77  YDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY 135
           +D+ RFG    RASPRQ+D M+VAGT   KMA  ++R+YDQM  P++VISMG+CAN GG 
Sbjct: 85  HDVARFGAEVLRASPRQADFMVVAGTCFTKMAPVIQRLYDQMLAPKWVISMGACANSGGM 144

Query: 136 YHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
           Y   YSVV+G D+ +PVD+Y+PGCPP  EA +  +LLLQ+ I +  
Sbjct: 145 Y-DIYSVVQGVDKFLPVDVYIPGCPPRPEAYMQALLLLQESIGKER 189


>gi|309812337|ref|ZP_07706092.1| NADH-quinone oxidoreductase, B subunit [Dermacoccus sp. Ellin185]
 gi|308433642|gb|EFP57519.1| NADH-quinone oxidoreductase, B subunit [Dermacoccus sp. Ellin185]
          Length = 249

 Score =  199 bits (507), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 76/137 (55%), Positives = 100/137 (72%), Gaps = 1/137 (0%)

Query: 46  LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR-ASPRQSDVMIVAGTLTN 104
           ++ W R  SL    FGLACCA+E +  SM R+D  R G  P    PRQ+D+M+V+GT+T+
Sbjct: 53  VLNWGRRYSLWVFNFGLACCAIEFIAGSMSRHDFIRLGVIPFAPGPRQADLMVVSGTVTD 112

Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164
           KMA A+RR+YDQMPEP+YVIS G+C+N GG Y  SYSV +G D++VPVD+YVPGCPP  E
Sbjct: 113 KMAPAVRRLYDQMPEPKYVISFGACSNSGGPYWDSYSVTKGVDQLVPVDVYVPGCPPRPE 172

Query: 165 ALIYGILLLQKKIRRVG 181
           AL+ GI+ LQ +I +  
Sbjct: 173 ALLQGIVTLQNQIAQEK 189


>gi|146304760|ref|YP_001192076.1| NADH-quinone oxidoreductase subunit B [Metallosphaera sedula DSM
           5348]
 gi|145703010|gb|ABP96152.1| NADH dehydrogenase subunit B [Metallosphaera sedula DSM 5348]
          Length = 170

 Score =  199 bits (507), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 68/144 (47%), Positives = 89/144 (61%)

Query: 41  TSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAG 100
             V  L  W    SL    F  +CC  E    +  R+D ERFG  P AS RQS+++ + G
Sbjct: 26  KPVKTLRDWGIAFSLWPPHFTTSCCGTEFGAFAAARFDAERFGMLPFASSRQSNILTIEG 85

Query: 101 TLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCP 160
           TLT KMA A R VYDQMPEP+YVI++G+C   GG +  SY+ V   D  +PVD+Y+PGCP
Sbjct: 86  TLTRKMARAARIVYDQMPEPKYVIALGACILEGGIFWNSYNTVLPSDVGIPVDLYLPGCP 145

Query: 161 PTAEALIYGILLLQKKIRRVGNVK 184
              EA+  G+L+LQKKIR  G ++
Sbjct: 146 TRPEAIARGLLMLQKKIRTQGAIR 169


>gi|188996814|ref|YP_001931065.1| NADH-quinone oxidoreductase, B subunit [Sulfurihydrogenibium sp.
           YO3AOP1]
 gi|238065219|sp|B2V988|NUOB_SULSY RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|188931881|gb|ACD66511.1| NADH-quinone oxidoreductase, B subunit [Sulfurihydrogenibium sp.
           YO3AOP1]
          Length = 171

 Score =  199 bits (507), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 75/142 (52%), Positives = 109/142 (76%), Gaps = 1/142 (0%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           +T  G ++T+V+++++W R  SL  ++ GLACCA+EMM  +  R+D +R G   R SPRQ
Sbjct: 3   MTSSGIILTTVEEVLSWGRRNSLWPVSVGLACCAIEMMHTAASRFDTDRLGIIFRGSPRQ 62

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           SDV+IVAGT+ NK+A  LR +Y+QMP+P++VISMG CA+ GG +  +Y  ++G DRI+PV
Sbjct: 63  SDVLIVAGTVVNKVAPMLRLIYEQMPDPKWVISMGGCASAGGPFP-TYPTLQGVDRIIPV 121

Query: 153 DIYVPGCPPTAEALIYGILLLQ 174
           D+Y+PGCPPT +AL++GIL LQ
Sbjct: 122 DVYIPGCPPTPQALLWGILELQ 143


>gi|71754617|ref|XP_828223.1| NADH-ubiquinone oxidoreductase 20 kDa subunit mitochondrial
           precursor [Trypanosoma brucei TREU927]
 gi|6647671|sp|Q26783|NDUS7_TRYBB RecName: Full=NADH dehydrogenase [ubiquinone] iron-sulfur protein
           7, mitochondrial; AltName: Full=Complex I-20kD;
           Short=CI-20kD; AltName: Full=NADH-ubiquinone
           oxidoreductase 20 kDa subunit; Flags: Precursor
 gi|162168|gb|AAA30217.1| NADH dehydrogenase (ubiquinone) [Trypanosoma brucei]
 gi|70833609|gb|EAN79111.1| NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial
           precursor [Trypanosoma brucei]
 gi|261334029|emb|CBH17023.1| NADH-ubiquinone oxidoreductase 20 kDa subunit (mitochondrial
           precursor), putative [Trypanosoma brucei gambiense
           DAL972]
          Length = 202

 Score =  199 bits (507), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 82/137 (59%), Positives = 108/137 (78%)

Query: 42  SVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGT 101
           ++  L  W    S   +TFGLACCAVEMM A   RYDL+RFG  PR +PRQ++++IV+GT
Sbjct: 55  TLHDLTEWCLAYSPWPLTFGLACCAVEMMHAYASRYDLDRFGIVPRPTPRQAEIIIVSGT 114

Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP 161
           +TNKMA  LR +Y QM  P++VISMGSCANGGGYYH+SY+V+RGC+R +PVD ++PGCPP
Sbjct: 115 VTNKMAPILRNIYVQMVNPKWVISMGSCANGGGYYHFSYAVLRGCERAIPVDFWIPGCPP 174

Query: 162 TAEALIYGILLLQKKIR 178
           +AE+L++ +  LQKKIR
Sbjct: 175 SAESLVFCLHTLQKKIR 191


>gi|329296020|ref|ZP_08253356.1| NADH dehydrogenase subunit B [Plautia stali symbiont]
          Length = 225

 Score =  199 bits (507), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 75/173 (43%), Positives = 104/173 (60%), Gaps = 5/173 (2%)

Query: 13  GQSSCSLEKVDADFSRISSEITHK---GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEM 69
                 L+K +     +   +      G L  ++  +V W R  SL    FGL+CC VEM
Sbjct: 14  DNDRYPLQKQEIVTDPLEQHVHRSVYMGKLEHALHDMVNWGRKNSLWPYNFGLSCCYVEM 73

Query: 70  MQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGS 128
             +    +D+ RFG    RASPRQ+D M++AGT   KMA  ++R+YDQM EP++VISMG+
Sbjct: 74  TTSFTAVHDVARFGAEVMRASPRQADFMVIAGTPFTKMAPVIQRLYDQMLEPKWVISMGA 133

Query: 129 CANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
           CAN GG Y   YSVV+G D+ +PVD+Y+PGCPP  EA +  +LLL+K I +  
Sbjct: 134 CANSGGMY-DIYSVVQGVDKFLPVDVYIPGCPPRPEAYMQALLLLRKSIGKER 185


>gi|154339768|ref|XP_001565841.1| NADH-ubiquinone oxidoreductase 20 kDa subunit,mitochondrial
           precursor [Leishmania braziliensis MHOM/BR/75/M2904]
 gi|134063159|emb|CAM45359.1| NADH-ubiquinone oxidoreductase 20 kDa subunit,mitochondrial
           precursor [Leishmania braziliensis MHOM/BR/75/M2904]
          Length = 201

 Score =  199 bits (506), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 82/137 (59%), Positives = 108/137 (78%)

Query: 42  SVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGT 101
           ++  L  W    S   +TFGLACCAVEMM +   RYDL+RFG  PR SPRQ++++IV+GT
Sbjct: 55  TLHDLTEWVLAYSPWPLTFGLACCAVEMMHSYSSRYDLDRFGIVPRPSPRQAEIIIVSGT 114

Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP 161
           +TNKMA  LR +Y QM  P++VISMGSCANGGGYYH+SY+V+RGC+R +PVD ++PGCPP
Sbjct: 115 VTNKMAPLLRNIYVQMVNPKWVISMGSCANGGGYYHFSYAVLRGCERSIPVDFWIPGCPP 174

Query: 162 TAEALIYGILLLQKKIR 178
           +AE+L++ +  LQKKIR
Sbjct: 175 SAESLVFCLHNLQKKIR 191


>gi|308187603|ref|YP_003931734.1| NADH dehydrogenase I chain B [Pantoea vagans C9-1]
 gi|308058113|gb|ADO10285.1| NADH dehydrogenase I chain B [Pantoea vagans C9-1]
          Length = 225

 Score =  199 bits (506), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 75/172 (43%), Positives = 104/172 (60%), Gaps = 5/172 (2%)

Query: 14  QSSCSLEKVDADFSRISSEITHK---GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMM 70
                L+K +     +   +      G L  ++  +V W R  SL    FGL+CC VEM 
Sbjct: 15  NDRYPLQKQEIVSDPLEQHVHRSVYMGKLENALHDMVNWGRKNSLWPYNFGLSCCYVEMT 74

Query: 71  QASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSC 129
            +    +D+ RFG    RASPRQ+D M++AGT   KMA  ++R+YDQM EP++VISMG+C
Sbjct: 75  TSFTAVHDVARFGAEVMRASPRQADFMVIAGTPFTKMAPVIQRLYDQMLEPKWVISMGAC 134

Query: 130 ANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
           AN GG Y   YSVV+G D+ +PVD+Y+PGCPP  EA +  +LLLQ+ I +  
Sbjct: 135 ANSGGMY-DIYSVVQGVDKFLPVDVYIPGCPPRPEAYMQALLLLQESIGKER 185


>gi|85059578|ref|YP_455280.1| NADH dehydrogenase subunit B [Sodalis glossinidius str.
           'morsitans']
 gi|123519200|sp|Q2NSK0|NUOB_SODGM RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|84780098|dbj|BAE74875.1| NADH dehydrogenase I subunit B [Sodalis glossinidius str.
           'morsitans']
          Length = 224

 Score =  199 bits (506), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 78/185 (42%), Positives = 106/185 (57%), Gaps = 5/185 (2%)

Query: 1   MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHK---GFLVTSVDQLVTWARTGSLMW 57
           M  T    +         L+K +     +   +      G L  ++   V W R  SL  
Sbjct: 1   MDYTLTRAEPDGDNERYPLQKQEIVADPLEQHVHRSVYLGKLERALHNAVNWGRGNSLWP 60

Query: 58  MTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQ 116
             FGL+CC VEM  +    +D+ RFG    RASPRQ+D M+VAGT   KMA  ++R+YDQ
Sbjct: 61  YNFGLSCCYVEMTTSFTAVHDVARFGSEVIRASPRQADFMVVAGTPFTKMAPVIQRLYDQ 120

Query: 117 MPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKK 176
           M EP++VISMG+CAN GG Y   YSVV+G D+ +PVD+Y+PGCPP  EA I  +LLL++ 
Sbjct: 121 MLEPKWVISMGACANSGGMY-DIYSVVQGVDKFLPVDVYIPGCPPRPEAYIQALLLLKES 179

Query: 177 IRRVG 181
           I +  
Sbjct: 180 IGKER 184


>gi|261416512|ref|YP_003250195.1| NADH-quinone oxidoreductase, B subunit [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|261372968|gb|ACX75713.1| NADH-quinone oxidoreductase, B subunit [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|302327904|gb|ADL27105.1| NADH-quinone oxidoreductase, B subunit [Fibrobacter succinogenes
           subsp. succinogenes S85]
          Length = 211

 Score =  199 bits (506), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 72/157 (45%), Positives = 101/157 (64%), Gaps = 2/157 (1%)

Query: 29  ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-R 87
           + +E      + +S+D LV W R+ SL    +G ACCA+E M   + RYDL R G    R
Sbjct: 1   MGNEAEKPNIITSSLDFLVNWGRSNSLWPFPYGTACCAIEFMSTEVGRYDLSRIGSEYVR 60

Query: 88  ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCD 147
            +PRQSDV++VAGT+T K A  L+R+Y+QM EPR+VI+MG+CA+ GG ++  Y  V G D
Sbjct: 61  FTPRQSDVLLVAGTITYKQAPILKRIYEQMAEPRWVIAMGACASSGG-FYDCYCTVPGID 119

Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
            I+PVD+Y+ GCPP  EA    +  LQKK++    +K
Sbjct: 120 HIIPVDVYIGGCPPRPEAFFDAMFDLQKKVKDESFMK 156


>gi|242239967|ref|YP_002988148.1| NADH dehydrogenase subunit B [Dickeya dadantii Ech703]
 gi|242132024|gb|ACS86326.1| NADH-quinone oxidoreductase, B subunit [Dickeya dadantii Ech703]
          Length = 224

 Score =  199 bits (506), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 76/163 (46%), Positives = 103/163 (63%), Gaps = 2/163 (1%)

Query: 20  EKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDL 79
           E V+    +        G L  ++  +V W R+ SL    FGL+CC VEM  +    +D+
Sbjct: 23  EVVNDPLEQHVHRSVFMGNLEHALHNMVNWGRSNSLWPYNFGLSCCYVEMATSFTAVHDV 82

Query: 80  ERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY 138
            RFG    RASPRQ+D M+VAGT   KMA  ++R+YDQM EP++VISMG+CAN GG Y  
Sbjct: 83  ARFGSEVIRASPRQADFMVVAGTPFLKMAPVIQRLYDQMLEPKWVISMGACANSGGMY-D 141

Query: 139 SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
            YSVV+G D+ +PVD+Y+PGCPP  EA +  +LLL++ IR   
Sbjct: 142 IYSVVQGVDKFLPVDVYIPGCPPRPEAYMQALLLLKESIREER 184


>gi|304398215|ref|ZP_07380089.1| NADH-quinone oxidoreductase, B subunit [Pantoea sp. aB]
 gi|304354081|gb|EFM18454.1| NADH-quinone oxidoreductase, B subunit [Pantoea sp. aB]
          Length = 225

 Score =  199 bits (506), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 75/172 (43%), Positives = 104/172 (60%), Gaps = 5/172 (2%)

Query: 14  QSSCSLEKVDADFSRISSEITHK---GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMM 70
                L+K +     +   +      G L  ++  +V W R  SL    FGL+CC VEM 
Sbjct: 15  NDRYPLQKQEIVSDPLEQHVHRSVYMGKLENALHDMVNWGRKNSLWPYNFGLSCCYVEMT 74

Query: 71  QASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSC 129
            +    +D+ RFG    RASPRQ+D M++AGT   KMA  ++R+YDQM EP++VISMG+C
Sbjct: 75  TSFTAVHDVARFGAEVMRASPRQADFMVIAGTPFTKMAPVIQRLYDQMLEPKWVISMGAC 134

Query: 130 ANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
           AN GG Y   YSVV+G D+ +PVD+Y+PGCPP  EA +  +LLLQ+ I +  
Sbjct: 135 ANSGGMY-DIYSVVQGVDKFLPVDVYIPGCPPRPEAYMQALLLLQESIGKER 185


>gi|290475916|ref|YP_003468811.1| NADH dehydrogenase I subunit B [Xenorhabdus bovienii SS-2004]
 gi|289175244|emb|CBJ82047.1| NADH dehydrogenase I chain B [Xenorhabdus bovienii SS-2004]
          Length = 224

 Score =  199 bits (506), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 73/163 (44%), Positives = 104/163 (63%), Gaps = 2/163 (1%)

Query: 20  EKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDL 79
           E V+    +      + G L  ++  +V W R  SL    FGL+CC VEM+ +    +D+
Sbjct: 23  ELVNDPLEQHVHRSVYMGKLEHALHDMVNWGRKNSLWPYNFGLSCCYVEMVTSFTAVHDV 82

Query: 80  ERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY 138
            RFG    RASPRQ+D M+++GT   KMA  ++R+YDQ+ EP++VISMG+CAN GG Y  
Sbjct: 83  ARFGAEVLRASPRQADFMVISGTCFVKMAPVIQRLYDQLLEPKWVISMGACANSGGMY-D 141

Query: 139 SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
            YSVV+G D+ +PVD+Y+PGCPP  EA +  +LLLQ+ I +  
Sbjct: 142 IYSVVQGVDKFIPVDVYIPGCPPRPEAYMQALLLLQESIGKER 184


>gi|168700846|ref|ZP_02733123.1| NADH-quinone oxidoreductase, B subunit [Gemmata obscuriglobus UQM
           2246]
          Length = 201

 Score =  199 bits (506), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 73/147 (49%), Positives = 100/147 (68%), Gaps = 2/147 (1%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQSDVM 96
           F++  +D L   AR  SL  M F  ACC +E+M  +  RYD+ RFG    R SPRQ DVM
Sbjct: 10  FMIAPLDYLANMARKHSLWPMPFATACCGIELMATASSRYDIARFGSEAMRFSPRQCDVM 69

Query: 97  IVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV 156
           IVAG +  KM   ++R++ QMPEP++ ISMG+CA+ GG +  +Y+VV+G DR +PVD+YV
Sbjct: 70  IVAGRVAMKMVPVMQRIWLQMPEPKWCISMGACASSGGVF-DTYAVVQGIDRFIPVDVYV 128

Query: 157 PGCPPTAEALIYGILLLQKKIRRVGNV 183
           PGCPP  E LI  +L LQ+KI++ G +
Sbjct: 129 PGCPPRPEQLIRAVLDLQEKIQKTGTI 155


>gi|55376749|ref|YP_134600.1| NADH dehydrogenase/oxidoreductase [Haloarcula marismortui ATCC
           43049]
 gi|55229474|gb|AAV44894.1| NADH dehydrogenase/oxidoreductase [Haloarcula marismortui ATCC
           43049]
          Length = 228

 Score =  199 bits (506), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 76/168 (45%), Positives = 111/168 (66%), Gaps = 2/168 (1%)

Query: 12  SGQSSCSLEKVDADFSRISSEITHKG-FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMM 70
           S    C   + +  F+    E+     F++T  D  + W R  S+  + FG+ACC +EMM
Sbjct: 13  SDDRICPGRRANDRFNSTLREVLGSSPFILTKFDTFLNWVRGSSMFVLQFGIACCTIEMM 72

Query: 71  QASMPRYDLERFGF-APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSC 129
                ++DL+RF    PRASPRQ+D++IV GT+ +K A  ++RVYDQMPEP++V+SMGSC
Sbjct: 73  GTLATKHDLDRFAAGVPRASPRQADLIIVPGTIVSKFAPRMKRVYDQMPEPKFVVSMGSC 132

Query: 130 ANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
              GG +   Y+V++G ++++PVDI+VPGCPP  EALIYGI  LQ++I
Sbjct: 133 TISGGPFQEGYNVIKGAEQVIPVDIHVPGCPPRPEALIYGIAKLQERI 180


>gi|256831780|ref|YP_003160507.1| NADH-quinone oxidoreductase, B subunit [Jonesia denitrificans DSM
           20603]
 gi|256685311|gb|ACV08204.1| NADH-quinone oxidoreductase, B subunit [Jonesia denitrificans DSM
           20603]
          Length = 183

 Score =  198 bits (505), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 75/153 (49%), Positives = 108/153 (70%), Gaps = 2/153 (1%)

Query: 29  ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PR 87
           ++ + +  GF   S++ +    R GS+  +TFGLACCA+EMM  +  R+D+ RFG    R
Sbjct: 1   MAHDDSTPGFFTASLEDVAGLFRKGSMWPVTFGLACCAIEMMATASSRFDVARFGMEVFR 60

Query: 88  ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCD 147
           ASPRQ+D+MIVAG ++ KMA  +R+VYDQM EP++V+SMG CA+ GG ++  Y++V+G D
Sbjct: 61  ASPRQADLMIVAGRVSQKMAPVVRQVYDQMAEPKWVLSMGVCASSGGMFNN-YAIVQGVD 119

Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
            IVPVDIY+PGCPP  E LI  +L L K+++  
Sbjct: 120 HIVPVDIYLPGCPPRPEMLINAMLELHKQVQEQ 152


>gi|168705443|ref|ZP_02737720.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit [Gemmata
           obscuriglobus UQM 2246]
          Length = 203

 Score =  198 bits (505), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 84/152 (55%), Positives = 114/152 (75%), Gaps = 2/152 (1%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APRASPRQ 92
              GF+ T+++  + WAR  SL  MTFGLACCA+EMM    PRYD++RFG  A RA+PRQ
Sbjct: 8   MRDGFVATNLEHAINWARESSLWPMTFGLACCAIEMMATGAPRYDIDRFGAGAFRATPRQ 67

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCAN-GGGYYHYSYSVVRGCDRIVP 151
           +D+MIVAGT+  KMA  +RR+Y+QMP+P++VI+MG+C   GG YY Y Y+V +G D IVP
Sbjct: 68  ADLMIVAGTVNLKMAERVRRLYNQMPDPKFVIAMGACTCGGGPYYKYGYNVAKGVDLIVP 127

Query: 152 VDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           VD+YVPGCPP  EAL+ G++ +Q KIR++  +
Sbjct: 128 VDVYVPGCPPRPEALLEGLMRVQDKIRKMREL 159


>gi|261820793|ref|YP_003258899.1| NADH dehydrogenase subunit B [Pectobacterium wasabiae WPP163]
 gi|261604806|gb|ACX87292.1| NADH-quinone oxidoreductase, B subunit [Pectobacterium wasabiae
           WPP163]
          Length = 224

 Score =  198 bits (505), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 74/166 (44%), Positives = 102/166 (61%), Gaps = 2/166 (1%)

Query: 17  CSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPR 76
              E V     +      + G L  ++   V W R  SL    FGL+CC VEM+ +    
Sbjct: 20  QRQETVSDPLEQHVHRSVYMGKLEHALHDTVNWGRQNSLWPYNFGLSCCYVEMVTSFTAV 79

Query: 77  YDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY 135
           +D+ RFG    RASPRQ+D M+VAGT   KMA  ++R+Y+QM EP++VISMG+CAN GG 
Sbjct: 80  HDVARFGAEVLRASPRQADFMVVAGTCFTKMAPVIQRLYEQMLEPKWVISMGACANSGGM 139

Query: 136 YHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
           Y   YSVV+G D+ +PVD+Y+PGCPP  EA +  +LLL++ I +  
Sbjct: 140 Y-DIYSVVQGVDKFLPVDVYIPGCPPRPEAYMQALLLLKESIGKER 184


>gi|302870016|ref|YP_003838653.1| NADH-quinone oxidoreductase subunit B [Micromonospora aurantiaca
           ATCC 27029]
 gi|315503712|ref|YP_004082599.1| NADH-quinone oxidoreductase, b subunit [Micromonospora sp. L5]
 gi|302572875|gb|ADL49077.1| NADH-quinone oxidoreductase, B subunit [Micromonospora aurantiaca
           ATCC 27029]
 gi|315410331|gb|ADU08448.1| NADH-quinone oxidoreductase, B subunit [Micromonospora sp. L5]
          Length = 186

 Score =  198 bits (505), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 77/133 (57%), Positives = 102/133 (76%), Gaps = 1/133 (0%)

Query: 46  LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS-PRQSDVMIVAGTLTN 104
           ++ W R  SL    FGLACCA+E +  SM R+D  R G  P A  PRQ+D+M+V+GT+T+
Sbjct: 14  VLNWGRRYSLWVFNFGLACCAIEFIATSMGRHDFMRLGVIPFAHGPRQADLMVVSGTVTD 73

Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164
           KMA A++R+YDQMPEP+YVIS G+C+N GG Y  SYSV +G D+++PVD+YVPGCPP  E
Sbjct: 74  KMAPAVKRLYDQMPEPKYVISFGACSNCGGPYWDSYSVTKGVDQLIPVDVYVPGCPPRPE 133

Query: 165 ALIYGILLLQKKI 177
           AL++GIL LQ+KI
Sbjct: 134 ALLHGILRLQEKI 146


>gi|52550302|gb|AAU84151.1| F420H2 dehydrogenase subunit B [uncultured archaeon GZfos37B2]
          Length = 175

 Score =  198 bits (505), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 64/138 (46%), Positives = 92/138 (66%)

Query: 41  TSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAG 100
           +    ++ W R  SL +MT  + CC VEM+ A    YD +RFG  PR SPR +DVM+++G
Sbjct: 26  SPAQDVINWGRKNSLWFMTQPMGCCGVEMIAAGCSHYDTDRFGIIPRCSPRHADVMVISG 85

Query: 101 TLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCP 160
            +  K   AL+R+Y+QMP P++VI MG+C+  GG ++ SY+ ++  D I PVD+Y+ GCP
Sbjct: 86  YIVRKYFPALKRLYEQMPSPKWVICMGNCSISGGPFYRSYNTLQNIDEIFPVDVYITGCP 145

Query: 161 PTAEALIYGILLLQKKIR 178
           P  EALI G + LQKKI+
Sbjct: 146 PRPEALIQGFIELQKKIK 163


>gi|318606467|emb|CBY27965.1| NADH-ubiquinone oxidoreductase chain B [Yersinia enterocolitica
           subsp. palearctica Y11]
          Length = 225

 Score =  198 bits (505), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 73/146 (50%), Positives = 99/146 (67%), Gaps = 2/146 (1%)

Query: 37  GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95
           G L  ++  +V W R  SL    FGL+CC VEM+ +    +D+ RFG    RASPRQ+D 
Sbjct: 41  GKLENAMHDMVNWGRKNSLWPYNFGLSCCYVEMVTSFTAVHDVARFGAEVLRASPRQADF 100

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
           M+VAGT   KMA  ++R+Y+QM EP++VISMG+CAN GG Y   YSVV+G D+ +PVD+Y
Sbjct: 101 MVVAGTCFTKMAPVIQRLYEQMLEPKWVISMGACANSGGMY-DIYSVVQGVDKFLPVDVY 159

Query: 156 VPGCPPTAEALIYGILLLQKKIRRVG 181
           +PGCPP  EA +  +LLLQ+ I +  
Sbjct: 160 IPGCPPRPEAYMQALLLLQESIGKER 185


>gi|317153001|ref|YP_004121049.1| NADH-quinone oxidoreductase subunit B [Desulfovibrio aespoeensis
           Aspo-2]
 gi|316943252|gb|ADU62303.1| NADH-quinone oxidoreductase, B subunit [Desulfovibrio aespoeensis
           Aspo-2]
          Length = 181

 Score =  198 bits (505), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 75/141 (53%), Positives = 98/141 (69%), Gaps = 3/141 (2%)

Query: 40  VTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQSDVMIV 98
           +     L    R+ SL  MTFGLACCA+EMM   M R+D+ RFG    R SPRQSDVMIV
Sbjct: 27  LKLAQDLFDVCRSMSLWPMTFGLACCAIEMMATGMARFDMARFGAEVFRPSPRQSDVMIV 86

Query: 99  AGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY--HYSYSVVRGCDRIVPVDIYV 156
           AGT+T KMA A+ R+Y+QMP P++VI+MG+CA  GG +    +Y+V+ G D ++PVD+YV
Sbjct: 87  AGTVTKKMAPAVVRLYEQMPGPKWVIAMGNCAISGGPFKIKDNYNVIEGVDTLIPVDVYV 146

Query: 157 PGCPPTAEALIYGILLLQKKI 177
           PGCPP  E L+ G   LQ++I
Sbjct: 147 PGCPPRPEGLLEGFFQLQRQI 167


>gi|110637786|ref|YP_677993.1| NADH dehydrogenase subunit B [Cytophaga hutchinsonii ATCC 33406]
 gi|123163626|sp|Q11VB3|NUOB2_CYTH3 RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName:
           Full=NADH dehydrogenase I subunit B 2; AltName:
           Full=NDH-1 subunit B 2
 gi|110280467|gb|ABG58653.1| NADH dehydrogenase subunit B [Cytophaga hutchinsonii ATCC 33406]
          Length = 181

 Score =  198 bits (504), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 67/155 (43%), Positives = 97/155 (62%), Gaps = 2/155 (1%)

Query: 22  VDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLER 81
            D         +   GF  TS+D ++  AR  SL  + F  +CC +E M      YD+ R
Sbjct: 2   SDIKIEEKPDGLEGPGFFATSLDSVIGLARKNSLWPLPFATSCCGIEFMATMASTYDIAR 61

Query: 82  FGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSY 140
           FG   P  SPRQ+DV++V GT+  KM   LR VY+QM EP++V+++G+CA+ GG +  +Y
Sbjct: 62  FGAERPSFSPRQADVLLVMGTIAKKMGPVLRHVYEQMAEPKWVVAVGACASSGGIF-DTY 120

Query: 141 SVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175
           SV++G DRI+PVD+YVPGCPP  E +I G++ +Q 
Sbjct: 121 SVLQGIDRIIPVDVYVPGCPPRPEQIIQGLMRVQD 155


>gi|42524476|ref|NP_969856.1| NADH dehydrogenase I chain B [Bdellovibrio bacteriovorus HD100]
 gi|81616434|sp|Q6MIR4|NUOB_BDEBA RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|39576685|emb|CAE80849.1| NADH dehydrogenase I chain B [Bdellovibrio bacteriovorus HD100]
          Length = 187

 Score =  198 bits (504), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 79/172 (45%), Positives = 112/172 (65%), Gaps = 12/172 (6%)

Query: 8   QKIISGQSSCSLEKVDADFSRISSEITHKGFLVTS-VDQLVTWARTGSLMWMTFGLACCA 66
           Q ++S       + VD            +GF  TS +D +V W R  SL  M +G ACC 
Sbjct: 7   QGLVSHDGMTGTQAVDD---------MSRGFAFTSKLDAIVAWGRKNSLWPMPYGTACCG 57

Query: 67  VEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVIS 125
           +E M    P+YDL RFG    R SPRQ+D+++VAGT+T KMA  + R+Y QM EP+YV+S
Sbjct: 58  IEFMSVMGPKYDLARFGAEVARFSPRQADLLVVAGTITEKMAPVIVRIYQQMLEPKYVLS 117

Query: 126 MGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
           MG+CA+ GG+Y  +Y V++G D+++PVD+Y+PGCPPT EA++ GI+ LQ+ I
Sbjct: 118 MGACASSGGFYR-AYHVLQGVDKVIPVDVYIPGCPPTPEAVMDGIMALQRMI 168


>gi|134299891|ref|YP_001113387.1| NADH-quinone oxidoreductase subunit B [Desulfotomaculum reducens
           MI-1]
 gi|218527989|sp|A4J659|NUOB_DESRM RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|134052591|gb|ABO50562.1| NADH dehydrogenase subunit B [Desulfotomaculum reducens MI-1]
          Length = 196

 Score =  198 bits (504), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 83/183 (45%), Positives = 121/183 (66%), Gaps = 4/183 (2%)

Query: 4   TTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLA 63
             V +  +  ++   L+K+ A+ + I      +   V  +++L+  AR  SL  M FGLA
Sbjct: 11  NPVAKDEMYEETVKRLKKLGAEPAVIGE--VARTVSVGPLEKLLNLARANSLWPMGFGLA 68

Query: 64  CCAVE-MMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPR 121
           CCA+E +M A+M R+DL RFG+   RASPRQ+DVM+V GT+T K A  + R+Y+QM EP+
Sbjct: 69  CCAIEGLMAANMARFDLARFGYEVMRASPRQADVMLVCGTVTKKAAPFVVRLYEQMAEPK 128

Query: 122 YVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
           YVI+MGSCA  GG +  SYSVV G D+++PVD+Y+PGC P  +A+I+G + L++KI    
Sbjct: 129 YVIAMGSCAISGGPFVDSYSVVPGVDKLIPVDVYIPGCAPRPDAVIHGFMKLKEKIINPE 188

Query: 182 NVK 184
            VK
Sbjct: 189 VVK 191


>gi|22125526|ref|NP_668949.1| NADH dehydrogenase subunit B [Yersinia pestis KIM 10]
 gi|45442154|ref|NP_993693.1| NADH dehydrogenase subunit B [Yersinia pestis biovar Microtus str.
           91001]
 gi|51596905|ref|YP_071096.1| NADH dehydrogenase subunit B [Yersinia pseudotuberculosis IP 32953]
 gi|108808041|ref|YP_651957.1| NADH dehydrogenase subunit B [Yersinia pestis Antiqua]
 gi|108812311|ref|YP_648078.1| NADH dehydrogenase subunit B [Yersinia pestis Nepal516]
 gi|123441677|ref|YP_001005661.1| NADH dehydrogenase subunit B [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|145599244|ref|YP_001163320.1| NADH dehydrogenase subunit B [Yersinia pestis Pestoides F]
 gi|149365540|ref|ZP_01887575.1| NADH dehydrogenase I chain B [Yersinia pestis CA88-4125]
 gi|162419739|ref|YP_001606303.1| NADH dehydrogenase subunit B [Yersinia pestis Angola]
 gi|165925479|ref|ZP_02221311.1| NADH-quinone oxidoreductase, B subunit [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165937679|ref|ZP_02226241.1| NADH-quinone oxidoreductase, B subunit [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166008478|ref|ZP_02229376.1| NADH-quinone oxidoreductase, B subunit [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166213868|ref|ZP_02239903.1| NADH-quinone oxidoreductase, B subunit [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|167398671|ref|ZP_02304195.1| NADH-quinone oxidoreductase, B subunit [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167422249|ref|ZP_02314002.1| NADH-quinone oxidoreductase, B subunit [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167424429|ref|ZP_02316182.1| NADH-quinone oxidoreductase, B subunit [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|167470575|ref|ZP_02335279.1| NADH-quinone oxidoreductase, B subunit [Yersinia pestis FV-1]
 gi|170023802|ref|YP_001720307.1| NADH dehydrogenase subunit B [Yersinia pseudotuberculosis YPIII]
 gi|186895986|ref|YP_001873098.1| NADH dehydrogenase subunit B [Yersinia pseudotuberculosis PB1/+]
 gi|218929640|ref|YP_002347515.1| NADH dehydrogenase subunit B [Yersinia pestis CO92]
 gi|229838096|ref|ZP_04458255.1| NADH:ubiquinone oxidoreductase, chain B [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229895295|ref|ZP_04510469.1| NADH:ubiquinone oxidoreductase, chain B [Yersinia pestis Pestoides
           A]
 gi|229898656|ref|ZP_04513801.1| NADH:ubiquinone oxidoreductase, chain B [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229902655|ref|ZP_04517772.1| NADH:ubiquinone oxidoreductase, chain B [Yersinia pestis Nepal516]
 gi|238759963|ref|ZP_04621116.1| NADH-quinone oxidoreductase subunit B [Yersinia aldovae ATCC 35236]
 gi|238763927|ref|ZP_04624884.1| NADH-quinone oxidoreductase subunit B [Yersinia kristensenii ATCC
           33638]
 gi|238784999|ref|ZP_04628997.1| NADH-quinone oxidoreductase subunit B [Yersinia bercovieri ATCC
           43970]
 gi|238794606|ref|ZP_04638213.1| NADH-quinone oxidoreductase subunit B [Yersinia intermedia ATCC
           29909]
 gi|238798405|ref|ZP_04641886.1| NADH-quinone oxidoreductase subunit B [Yersinia mollaretii ATCC
           43969]
 gi|270490163|ref|ZP_06207237.1| NADH dehydrogenase subunit B [Yersinia pestis KIM D27]
 gi|294504368|ref|YP_003568430.1| NADH dehydrogenase beta subunit [Yersinia pestis Z176003]
 gi|332162388|ref|YP_004298965.1| NADH dehydrogenase subunit B [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|81639043|sp|Q669A1|NUOB_YERPS RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|122979538|sp|Q1C6B0|NUOB_YERPA RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|122980104|sp|Q1CHQ2|NUOB_YERPN RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|123777024|sp|Q7CJ93|NUOB_YERPE RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|238065222|sp|A1JLG4|NUOB_YERE8 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|238065224|sp|B2K820|NUOB_YERPB RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|238065225|sp|A9R6L9|NUOB_YERPG RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|238065226|sp|A4TM35|NUOB_YERPP RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|238065227|sp|B1JGL4|NUOB_YERPY RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|21958425|gb|AAM85200.1|AE013766_3 NADH dehydrogenase I chain B [Yersinia pestis KIM 10]
 gi|45437018|gb|AAS62570.1| NADH dehydrogenase I chain B [Yersinia pestis biovar Microtus str.
           91001]
 gi|51590187|emb|CAH21824.1| NADH dehydrogenase I chain B [Yersinia pseudotuberculosis IP 32953]
 gi|108775959|gb|ABG18478.1| NADH dehydrogenase I chain B [Yersinia pestis Nepal516]
 gi|108779954|gb|ABG14012.1| NADH dehydrogenase I chain B [Yersinia pestis Antiqua]
 gi|115348251|emb|CAL21179.1| NADH dehydrogenase I chain B [Yersinia pestis CO92]
 gi|122088638|emb|CAL11433.1| NADH dehydrogenase I chain B [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|145210940|gb|ABP40347.1| NADH dehydrogenase I chain B [Yersinia pestis Pestoides F]
 gi|149291953|gb|EDM42027.1| NADH dehydrogenase I chain B [Yersinia pestis CA88-4125]
 gi|162352554|gb|ABX86502.1| NADH-quinone oxidoreductase, B subunit [Yersinia pestis Angola]
 gi|165914429|gb|EDR33044.1| NADH-quinone oxidoreductase, B subunit [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165922588|gb|EDR39739.1| NADH-quinone oxidoreductase, B subunit [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165992860|gb|EDR45161.1| NADH-quinone oxidoreductase, B subunit [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166205042|gb|EDR49522.1| NADH-quinone oxidoreductase, B subunit [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|166958755|gb|EDR55776.1| NADH-quinone oxidoreductase, B subunit [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167051175|gb|EDR62583.1| NADH-quinone oxidoreductase, B subunit [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167056311|gb|EDR66080.1| NADH-quinone oxidoreductase, B subunit [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|169750336|gb|ACA67854.1| NADH-quinone oxidoreductase, B subunit [Yersinia pseudotuberculosis
           YPIII]
 gi|186699012|gb|ACC89641.1| NADH-quinone oxidoreductase, B subunit [Yersinia pseudotuberculosis
           PB1/+]
 gi|229680102|gb|EEO76201.1| NADH:ubiquinone oxidoreductase, chain B [Yersinia pestis Nepal516]
 gi|229688204|gb|EEO80275.1| NADH:ubiquinone oxidoreductase, chain B [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229694462|gb|EEO84509.1| NADH:ubiquinone oxidoreductase, chain B [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229701781|gb|EEO89806.1| NADH:ubiquinone oxidoreductase, chain B [Yersinia pestis Pestoides
           A]
 gi|238697895|gb|EEP90655.1| NADH-quinone oxidoreductase subunit B [Yersinia kristensenii ATCC
           33638]
 gi|238701790|gb|EEP94354.1| NADH-quinone oxidoreductase subunit B [Yersinia aldovae ATCC 35236]
 gi|238714115|gb|EEQ06129.1| NADH-quinone oxidoreductase subunit B [Yersinia bercovieri ATCC
           43970]
 gi|238717719|gb|EEQ09554.1| NADH-quinone oxidoreductase subunit B [Yersinia mollaretii ATCC
           43969]
 gi|238726092|gb|EEQ17639.1| NADH-quinone oxidoreductase subunit B [Yersinia intermedia ATCC
           29909]
 gi|262362643|gb|ACY59364.1| NADH dehydrogenase beta subunit [Yersinia pestis D106004]
 gi|270338667|gb|EFA49444.1| NADH dehydrogenase subunit B [Yersinia pestis KIM D27]
 gi|294354827|gb|ADE65168.1| NADH dehydrogenase beta subunit [Yersinia pestis Z176003]
 gi|320014608|gb|ADV98179.1| NADH:ubiquinone oxidoreductase, chain B [Yersinia pestis biovar
           Medievalis str. Harbin 35]
 gi|325666618|gb|ADZ43262.1| NADH dehydrogenase subunit B [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|330860335|emb|CBX70648.1| NADH-quinone oxidoreductase subunit B [Yersinia enterocolitica
           W22703]
          Length = 225

 Score =  198 bits (504), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 73/146 (50%), Positives = 99/146 (67%), Gaps = 2/146 (1%)

Query: 37  GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95
           G L  ++  +V W R  SL    FGL+CC VEM+ +    +D+ RFG    RASPRQ+D 
Sbjct: 41  GKLENAMHDMVNWGRKNSLWPYNFGLSCCYVEMVTSFTAVHDVARFGAEVLRASPRQADF 100

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
           M+VAGT   KMA  ++R+Y+QM EP++VISMG+CAN GG Y   YSVV+G D+ +PVD+Y
Sbjct: 101 MVVAGTCFTKMAPVIQRLYEQMLEPKWVISMGACANSGGMY-DIYSVVQGVDKFLPVDVY 159

Query: 156 VPGCPPTAEALIYGILLLQKKIRRVG 181
           +PGCPP  EA +  +LLLQ+ I +  
Sbjct: 160 IPGCPPRPEAYMQALLLLQESIGKER 185


>gi|227112326|ref|ZP_03825982.1| NADH dehydrogenase subunit B [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 224

 Score =  198 bits (504), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 75/166 (45%), Positives = 103/166 (62%), Gaps = 2/166 (1%)

Query: 17  CSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPR 76
            S E V     +      + G L  ++   V W R  SL    FGL+CC VEM+ +    
Sbjct: 20  QSQEIVSDPLEQHVHRSVYMGKLEHALHDTVNWGRQNSLWPYNFGLSCCYVEMVTSFTAV 79

Query: 77  YDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY 135
           +D+ RFG    RASPRQ+D M+VAGT   KMA  ++R+Y+QM EP++VISMG+CAN GG 
Sbjct: 80  HDVARFGAEVLRASPRQADFMVVAGTCFTKMAPVIQRLYEQMLEPKWVISMGACANSGGM 139

Query: 136 YHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
           Y   YSVV+G D+ +PVD+Y+PGCPP  EA +  +LLL++ I +  
Sbjct: 140 Y-DIYSVVQGVDKFLPVDVYIPGCPPRPEAYMQALLLLKESIGKER 184


>gi|255037834|ref|YP_003088455.1| NADH dehydrogenase subunit B [Dyadobacter fermentans DSM 18053]
 gi|254950590|gb|ACT95290.1| NADH-quinone oxidoreductase, B subunit [Dyadobacter fermentans DSM
           18053]
          Length = 180

 Score =  198 bits (504), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 68/155 (43%), Positives = 102/155 (65%), Gaps = 7/155 (4%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQ 92
           +  GF  TS D+ +  AR+ SL  + F  +CC +E M      YD+ RFG   P  SPRQ
Sbjct: 14  SGSGFFATSFDEAIGLARSYSLWPLPFATSCCGIEFMATMGAHYDISRFGSERPSFSPRQ 73

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           +D+++V GT+  KMA  +++VY QM EPR+V+++G+CA+ GG +  +YSV++G DRI+PV
Sbjct: 74  ADLLMVMGTIAKKMAPVVKQVYLQMAEPRWVMAVGACASSGGIF-DTYSVLQGIDRIIPV 132

Query: 153 DIYVPGCPPTAEALIYGILLLQ-----KKIRRVGN 182
           D+YVPGCPP  E +I G++ +Q     +K+RR   
Sbjct: 133 DVYVPGCPPRPEQIIDGLMQIQYLAQNEKLRRRNT 167


>gi|317048938|ref|YP_004116586.1| NADH-quinone oxidoreductase subunit B [Pantoea sp. At-9b]
 gi|316950555|gb|ADU70030.1| NADH-quinone oxidoreductase, B subunit [Pantoea sp. At-9b]
          Length = 225

 Score =  198 bits (504), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 74/173 (42%), Positives = 104/173 (60%), Gaps = 5/173 (2%)

Query: 13  GQSSCSLEKVDADFSRISSEITHK---GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEM 69
                 L+K +     +   +      G L  ++  +V W R  SL    FGL+CC VEM
Sbjct: 14  DNDRYPLQKQEIVADPLEQHVHRSVYMGKLEHALHDMVNWGRKNSLWPYNFGLSCCYVEM 73

Query: 70  MQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGS 128
             +    +D+ RFG    RASPRQ+D M++AGT   KMA  ++R+YDQM EP++VISMG+
Sbjct: 74  TTSFTAVHDVARFGAEVMRASPRQADFMVIAGTPFTKMAPVIQRLYDQMLEPKWVISMGA 133

Query: 129 CANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
           CAN GG Y   YSVV+G D+ +PVD+Y+PGCPP  EA +  +LLL++ I +  
Sbjct: 134 CANSGGMY-DIYSVVQGVDKFLPVDVYIPGCPPRPEAYMQALLLLRESIGKER 185


>gi|269218338|ref|ZP_06162192.1| NADH-quinone oxidoreductase, B subunit [Actinomyces sp. oral taxon
           848 str. F0332]
 gi|269212197|gb|EEZ78537.1| NADH-quinone oxidoreductase, B subunit [Actinomyces sp. oral taxon
           848 str. F0332]
          Length = 199

 Score =  198 bits (503), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 73/164 (44%), Positives = 113/164 (68%), Gaps = 2/164 (1%)

Query: 21  KVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLE 80
           + ++  ++   +   +G  +TSV+ +  WA T S   +T GLACCA+EMM    PR+D  
Sbjct: 7   RAESRGAQAPHDAGSQGVFLTSVEAVANWAVTNSQWPVTMGLACCAIEMMSFGTPRFDAA 66

Query: 81  RFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS 139
           RFG    RASPRQ+D+MIV+G +++KMA  +R +YD+M +P++V+SMG CA+ GG ++  
Sbjct: 67  RFGMEVFRASPRQADLMIVSGRVSHKMAPVVRDIYDKMTDPKWVVSMGVCASSGGMFNN- 125

Query: 140 YSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           Y++V+GCD IVPVD+Y+PGCPP  E LI  +L L++ ++R   +
Sbjct: 126 YAIVQGCDHIVPVDVYLPGCPPRPEMLINAVLELREHVKRNRRL 169


>gi|116329153|ref|YP_798873.1| NADH dehydrogenase (ubiquinone), B chain [Leptospira borgpetersenii
           serovar Hardjo-bovis L550]
 gi|116330239|ref|YP_799957.1| NADH dehydrogenase (ubiquinone), B chain [Leptospira borgpetersenii
           serovar Hardjo-bovis JB197]
 gi|122281998|sp|Q04V71|NUOB_LEPBJ RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|122283065|sp|Q04YA5|NUOB_LEPBL RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|116121897|gb|ABJ79940.1| NADH dehydrogenase (ubiquinone), B chain [Leptospira borgpetersenii
           serovar Hardjo-bovis L550]
 gi|116123928|gb|ABJ75199.1| NADH dehydrogenase (ubiquinone), B chain [Leptospira borgpetersenii
           serovar Hardjo-bovis JB197]
          Length = 186

 Score =  198 bits (503), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 69/159 (43%), Positives = 105/159 (66%), Gaps = 2/159 (1%)

Query: 24  ADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFG 83
           +D S+   +       + +++ ++ W R  SL    F  ACC +E M  +   YD+ RFG
Sbjct: 4   SDLSKAPGQALGDMLQLGNIESVIQWGRGNSLWPFPFATACCGIEYMSTACSDYDIARFG 63

Query: 84  FA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142
              P  SPRQ+D+++V GT+T KMA  LR++YDQM EP++VIS+G+CA+ GG ++ +Y V
Sbjct: 64  AERPSFSPRQADMILVLGTITYKMAPVLRQIYDQMAEPKFVISVGACASSGGMFN-TYGV 122

Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
           ++G DRI+PVDIYVPGCPP  EA++  ++ LQ K++  G
Sbjct: 123 LQGVDRILPVDIYVPGCPPRPEAILDALVKLQTKLKTQG 161


>gi|312131895|ref|YP_003999235.1| NADH dehydrogenase subunit b [Leadbetterella byssophila DSM 17132]
 gi|311908441|gb|ADQ18882.1| NADH dehydrogenase subunit B [Leadbetterella byssophila DSM 17132]
          Length = 185

 Score =  198 bits (503), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 66/145 (45%), Positives = 100/145 (68%), Gaps = 2/145 (1%)

Query: 37  GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQSDV 95
           GF  TS+D+++  AR+ SL  + F  +CC +E M      YD+ RFG   P  SPRQSDV
Sbjct: 17  GFFATSLDKVIGLARSHSLWPLPFATSCCGIEFMATMGAHYDISRFGAERPSFSPRQSDV 76

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
           ++V GT+  KMA  +++VY QM EPR+VI++G+CA+ GG +  +YSV++G DR++PVD+Y
Sbjct: 77  LLVMGTIAKKMAPVVKQVYLQMAEPRWVIAVGACASSGGIF-DTYSVLQGIDRVIPVDVY 135

Query: 156 VPGCPPTAEALIYGILLLQKKIRRV 180
           VPGCPP  E ++ G++ +Q+  +  
Sbjct: 136 VPGCPPRPEQILDGLMQVQELAKNE 160


>gi|304311496|ref|YP_003811094.1| NADH dehydrogenase I, chain B [gamma proteobacterium HdN1]
 gi|301797229|emb|CBL45449.1| NADH dehydrogenase I, chain B [gamma proteobacterium HdN1]
          Length = 224

 Score =  198 bits (503), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 76/184 (41%), Positives = 109/184 (59%), Gaps = 9/184 (4%)

Query: 3   LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQ----LVTWARTGSLMWM 58
           LT VN           +E+       +  ++ ++  ++  ++     +V W R  S+   
Sbjct: 5   LTRVNPN--GPHDRYPVEEKQIVSDPLEDQV-NRNVMMGRLEDMLHGVVNWGRKNSIWPY 61

Query: 59  TFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQM 117
            FGL+CC VE+  A    +D+ RFG    RASPRQ+D+M+VAGT   KMA  ++R+Y+QM
Sbjct: 62  NFGLSCCYVEVTTAFTAPHDIARFGSEVLRASPRQADLMVVAGTCFVKMAPVVQRLYEQM 121

Query: 118 PEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
            EPR+VISMG+CAN GG Y   YSVV+G D+ +PVD+YVPGCPP  EA +  + LLQ  I
Sbjct: 122 LEPRWVISMGACANSGGMY-DIYSVVQGVDKFLPVDVYVPGCPPRPEAFLQALQLLQDSI 180

Query: 178 RRVG 181
            +  
Sbjct: 181 GKER 184


>gi|226944919|ref|YP_002799992.1| NADH dehydrogenase subunit B [Azotobacter vinelandii DJ]
 gi|259514652|sp|C1DL15|NUOB_AZOVD RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|226719846|gb|ACO79017.1| NADH-ubiquinone oxidoreductase, chain beta [Azotobacter vinelandii
           DJ]
          Length = 224

 Score =  198 bits (503), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 72/175 (41%), Positives = 106/175 (60%), Gaps = 7/175 (4%)

Query: 12  SGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQL----VTWARTGSLMWMTFGLACCAV 67
           +      + + +        ++ H+   +  ++ +    V W R  SL    FGL+CC V
Sbjct: 12  ASYEQYPIGERETVTDPSEGQV-HRNIFMGKLEDVLSGAVNWGRKNSLWPYNFGLSCCYV 70

Query: 68  EMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISM 126
           EM  A    +D+ RFG    RASPRQ+D M++AGT   KMA  ++R+Y+QM EP++VISM
Sbjct: 71  EMTTAFTAPHDIARFGAEVIRASPRQADFMVIAGTCFIKMAPIIQRLYEQMLEPKWVISM 130

Query: 127 GSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
           GSCAN GG Y   YSVV+G D+ +P+D+Y+PGCPP  EA + G++LLQ+ I +  
Sbjct: 131 GSCANSGGMY-DIYSVVQGVDKFLPIDVYIPGCPPRPEAFLQGLMLLQESIGQER 184


>gi|50121950|ref|YP_051117.1| NADH dehydrogenase subunit B [Pectobacterium atrosepticum SCRI1043]
 gi|227326166|ref|ZP_03830190.1| NADH dehydrogenase subunit B [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
 gi|253689147|ref|YP_003018337.1| NADH-quinone oxidoreductase, B subunit [Pectobacterium carotovorum
           subsp. carotovorum PC1]
 gi|6647661|sp|O85274|NUOB_PECCC RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|81644464|sp|Q6D2R8|NUOB_ERWCT RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|259514671|sp|C6DA45|NUOB_PECCP RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|3273736|gb|AAC38641.1| NADH dehydrogenase chain B [Pectobacterium carotovorum subsp.
           carotovorum]
 gi|49612476|emb|CAG75926.1| NADH-quinone oxidoreductase chain B [Pectobacterium atrosepticum
           SCRI1043]
 gi|251755725|gb|ACT13801.1| NADH-quinone oxidoreductase, B subunit [Pectobacterium carotovorum
           subsp. carotovorum PC1]
          Length = 224

 Score =  198 bits (503), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 75/185 (40%), Positives = 107/185 (57%), Gaps = 5/185 (2%)

Query: 1   MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHK---GFLVTSVDQLVTWARTGSLMW 57
           M  T    +         L++ +     +   +      G L  ++   V W R  SL  
Sbjct: 1   MDYTLTRIEPDGENDRYPLQRQEIVSDPLEQHVHRSVYMGKLEHALHDTVNWGRQNSLWP 60

Query: 58  MTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQ 116
             FGL+CC VEM+ +    +D+ RFG    RASPRQ+D M+VAGT   KMA  ++R+Y+Q
Sbjct: 61  YNFGLSCCYVEMVTSFTAVHDVARFGAEVLRASPRQADFMVVAGTCFTKMAPVIQRLYEQ 120

Query: 117 MPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKK 176
           M EP++VISMG+CAN GG Y   YSVV+G D+ +PVD+Y+PGCPP  EA +  +LLL++ 
Sbjct: 121 MLEPKWVISMGACANSGGMY-DIYSVVQGVDKFLPVDVYIPGCPPRPEAYMQALLLLKES 179

Query: 177 IRRVG 181
           I +  
Sbjct: 180 IGKER 184


>gi|226489136|emb|CAX74917.1| NADH dehydrogenase (ubiquinone) Fe-S protein 7 [Schistosoma
           japonicum]
          Length = 176

 Score =  198 bits (503), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 86/153 (56%), Positives = 110/153 (71%), Gaps = 3/153 (1%)

Query: 5   TVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLAC 64
                 +         K  + F +   ++    F++T +D L  WAR  S+  +TFGLAC
Sbjct: 26  PSEPSKVDNPDESIPYKPYSPFPKPQGKLD---FVLTRLDDLANWARKNSIYPLTFGLAC 82

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           CAVEMM  + PRYD++R+G   RASPRQ+D+MIV+GT+TNKMA ALRR+YDQM  P++VI
Sbjct: 83  CAVEMMHIAGPRYDMDRYGVVFRASPRQADLMIVSGTVTNKMAPALRRIYDQMTHPKWVI 142

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           SMGSCANGGGYYHYSYSV+RGCDR++PVDIYVP
Sbjct: 143 SMGSCANGGGYYHYSYSVLRGCDRVIPVDIYVP 175


>gi|255533962|ref|YP_003094334.1| NADH dehydrogenase subunit B [Pedobacter heparinus DSM 2366]
 gi|255346946|gb|ACU06272.1| NADH-quinone oxidoreductase, B subunit [Pedobacter heparinus DSM
           2366]
          Length = 180

 Score =  198 bits (503), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 66/164 (40%), Positives = 102/164 (62%), Gaps = 2/164 (1%)

Query: 22  VDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLER 81
            D +       I   GF  TS+D+++  AR+ SL  + F  +CC +E M      YD  R
Sbjct: 2   SDINIVEAPPGIEGSGFFATSLDKVIGLARSHSLWPLPFATSCCGIEFMATMGSHYDFGR 61

Query: 82  FGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSY 140
           FG      SPRQ+D+++V GT+  KM+  L++VY QM EPR+V+++G+CA+ GG +  +Y
Sbjct: 62  FGSERLSFSPRQADLLMVMGTIAKKMSPVLKQVYLQMAEPRWVMAVGACASSGGIF-DTY 120

Query: 141 SVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           SV++G D I+PVD+YVPGCPP  EA++ G   +Q+ +R   + +
Sbjct: 121 SVLQGIDEIIPVDVYVPGCPPRPEAILDGFGKIQELVRNESSRR 164


>gi|51893915|ref|YP_076606.1| NADH dehydrogenase I subunit B [Symbiobacterium thermophilum IAM
           14863]
 gi|81610392|sp|Q67KN6|NUOB2_SYMTH RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName:
           Full=NADH dehydrogenase I subunit B 2; AltName:
           Full=NDH-1 subunit B 2
 gi|51857604|dbj|BAD41762.1| NADH dehydrogenase I subunit B [Symbiobacterium thermophilum IAM
           14863]
          Length = 182

 Score =  198 bits (503), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 74/151 (49%), Positives = 105/151 (69%), Gaps = 1/151 (0%)

Query: 29  ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PR 87
           + +E    G L   + +++ W    S   + FG+ACCA+EMM A   +YD+ RFG    R
Sbjct: 22  VVNENVIAGKLPDVIKKVLGWGYGNSTWPLGFGIACCAIEMMAACSSKYDIARFGSEAMR 81

Query: 88  ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCD 147
            SPRQ+DVMIVAGT+  KMA  +RR+YDQM EP++VI+MG+CA+ GG Y  +Y+VV G  
Sbjct: 82  MSPRQADVMIVAGTVNEKMAVVVRRLYDQMSEPKFVIAMGACASNGGPYWDTYNVVDGVH 141

Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           ++VPVD+YVPGCPP  EAL+ G++ +Q+ I+
Sbjct: 142 KVVPVDVYVPGCPPRPEALLQGLMEIQEMIK 172


>gi|308275204|emb|CBX31801.1| NADH-quinone oxidoreductase subunit B 2 [uncultured
           Desulfobacterium sp.]
          Length = 183

 Score =  198 bits (503), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 77/141 (54%), Positives = 102/141 (72%), Gaps = 2/141 (1%)

Query: 41  TSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAG 100
             V  L+  AR  SL  +TFG+ACCA+EMM A M R+DL+RFG   RASPRQSDVM+VAG
Sbjct: 25  APVQNLLNLARVNSLWPITFGIACCAIEMMAAGMARFDLDRFGTIFRASPRQSDVMVVAG 84

Query: 101 TLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS--YSVVRGCDRIVPVDIYVPG 158
           T++ K+   +R +YDQMP P++V++MG+CA  GG + Y   Y++V G D+I+PVDIY+PG
Sbjct: 85  TISKKLVPTIRTLYDQMPGPKWVMAMGNCAISGGPFAYDGQYAIVNGTDKIIPVDIYIPG 144

Query: 159 CPPTAEALIYGILLLQKKIRR 179
           CPP  EA I G+L LQ  I +
Sbjct: 145 CPPRPEAFIQGLLKLQTLISK 165


>gi|148260123|ref|YP_001234250.1| NADH-quinone oxidoreductase, B subunit [Acidiphilium cryptum JF-5]
 gi|238065025|sp|A5FXJ9|NUOB2_ACICJ RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName:
           Full=NADH dehydrogenase I subunit B 2; AltName:
           Full=NDH-1 subunit B 2
 gi|146401804|gb|ABQ30331.1| NADH dehydrogenase subunit B [Acidiphilium cryptum JF-5]
          Length = 231

 Score =  198 bits (503), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 68/170 (40%), Positives = 106/170 (62%), Gaps = 2/170 (1%)

Query: 9   KIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVE 68
            ++ G  +       +      ++   +   +  ++ +V W R  S+    FGL+CC VE
Sbjct: 19  PLLRGLGTAGQPAAPSPGGGTFTDAVRRNVALGRLEDMVAWGRKYSIWPFNFGLSCCYVE 78

Query: 69  MMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMG 127
           M  A   ++D+ RFG    RA+PR++D+++++GT+  KMA  ++ +YDQM EPR+VISMG
Sbjct: 79  MATAFTSKFDIARFGSEVLRATPREADLIVISGTVFVKMAPVIKYLYDQMLEPRWVISMG 138

Query: 128 SCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
           +CAN GG Y   Y+VV+G D  +PVD+YVPGCPP  +AL+ G++LLQ  I
Sbjct: 139 ACANSGGMY-DIYAVVQGADSFLPVDVYVPGCPPRPDALLEGLMLLQNSI 187


>gi|253729561|ref|YP_003029744.1| NdhK [Bambusa oldhamii]
 gi|246367071|gb|ACS94682.1| NdhK [Bambusa oldhamii]
          Length = 253

 Score =  197 bits (502), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 61/154 (39%), Positives = 95/154 (61%), Gaps = 1/154 (0%)

Query: 28  RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
            +  + +      T+ +    W++  SL  + +G +CC +E       R+D +R+G+ P+
Sbjct: 35  PLLDQTSSNSVFSTTPNDFSNWSKLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGWVPK 94

Query: 88  ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146
           +SPRQ+++++ AG  T KMA +L R Y Q PEP+YVI+ G+C   GG +   SYS VRG 
Sbjct: 95  SSPRQANLILTAGPETMKMAPSLVRFYKQRPEPKYVIARGACTITGGMFSTDSYSTVRGV 154

Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           D++ PVD+Y+PGCPP  EA+I  +  L+KKI R 
Sbjct: 155 DKLNPVDVYLPGCPPKPEAVIDALTKLRKKISRE 188


>gi|146277729|ref|YP_001167888.1| NADH dehydrogenase subunit B [Rhodobacter sphaeroides ATCC 17025]
 gi|238065015|sp|A4WT69|NUOB1_RHOS5 RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName:
           Full=NADH dehydrogenase I subunit B 1; AltName:
           Full=NDH-1 subunit B 1
 gi|145555970|gb|ABP70583.1| NADH-quinone oxidoreductase, B subunit [Rhodobacter sphaeroides
           ATCC 17025]
          Length = 205

 Score =  197 bits (502), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 79/152 (51%), Positives = 100/152 (65%), Gaps = 2/152 (1%)

Query: 27  SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP 86
           +    +      L T +D LV W+R  SL    FGL+CC VEM  A  P YD  RFG   
Sbjct: 10  AEAPEDRMAASHLFTRLDDLVAWSRKHSLWPFNFGLSCCYVEMATALTPVYDQARFGAEV 69

Query: 87  -RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRG 145
            R++PRQ+D++IV+GT+  KMA  L R+Y QM EPR+VISMG+CAN GG Y   YSVV+G
Sbjct: 70  IRSTPRQADLLIVSGTVFRKMAVPLYRLYQQMREPRWVISMGACANSGGMY-DIYSVVQG 128

Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
            D  +PVD+YVPGCPP  EAL+  ++LLQ KI
Sbjct: 129 VDSFLPVDVYVPGCPPRPEALMEALVLLQSKI 160


>gi|242278962|ref|YP_002991091.1| NADH-quinone oxidoreductase, B subunit [Desulfovibrio salexigens
           DSM 2638]
 gi|242121856|gb|ACS79552.1| NADH-quinone oxidoreductase, B subunit [Desulfovibrio salexigens
           DSM 2638]
          Length = 179

 Score =  197 bits (502), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 69/137 (50%), Positives = 97/137 (70%), Gaps = 3/137 (2%)

Query: 44  DQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQSDVMIVAGTL 102
           +  +   R+ SL  MTFGLACCA+EMM   M R+D+ RFG    R S RQ+D+MIVAGT+
Sbjct: 25  EDAMNICRSMSLWPMTFGLACCAIEMMAVGMARFDMARFGAEVFRPSARQADLMIVAGTV 84

Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGY--YHYSYSVVRGCDRIVPVDIYVPGCP 160
           T KMA A+ R+Y+QMP P++V+++G+CA  GG   +   Y +V G D ++PVD+YVPGCP
Sbjct: 85  TKKMAPAVVRLYEQMPAPKWVLALGNCAISGGPFKFKGQYGIVEGVDNLIPVDVYVPGCP 144

Query: 161 PTAEALIYGILLLQKKI 177
           P  EAL+ G+  +Q+K+
Sbjct: 145 PRPEALLEGLFQIQEKV 161


>gi|326402924|ref|YP_004283005.1| NADH-quinone oxidoreductase subunit B [Acidiphilium multivorum
           AIU301]
 gi|325049785|dbj|BAJ80123.1| NADH-quinone oxidoreductase subunit B [Acidiphilium multivorum
           AIU301]
          Length = 231

 Score =  197 bits (502), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 68/170 (40%), Positives = 106/170 (62%), Gaps = 2/170 (1%)

Query: 9   KIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVE 68
            ++ G  +       +      ++   +   +  ++ +V W R  S+    FGL+CC VE
Sbjct: 19  PLLRGLGTAGQPAAPSPGGGTFTDAVRRNVALGRLEDMVAWGRKYSIWPFNFGLSCCYVE 78

Query: 69  MMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMG 127
           M  A   ++D+ RFG    RA+PR++D+++++GT+  KMA  ++ +YDQM EPR+VISMG
Sbjct: 79  MATAFTSKFDIARFGSEVLRATPREADLIVISGTVFVKMAPVIKYLYDQMLEPRWVISMG 138

Query: 128 SCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
           +CAN GG Y   Y+VV+G D  +PVD+YVPGCPP  +AL+ G++LLQ  I
Sbjct: 139 ACANSGGMY-DIYAVVQGADSFLPVDVYVPGCPPRPDALLEGLMLLQNSI 187


>gi|304312241|ref|YP_003811839.1| NADH dehydrogenase I, chain B [gamma proteobacterium HdN1]
 gi|301797974|emb|CBL46196.1| NADH dehydrogenase I, chain B [gamma proteobacterium HdN1]
          Length = 222

 Score =  197 bits (502), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 70/148 (47%), Positives = 105/148 (70%), Gaps = 2/148 (1%)

Query: 32  EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASP 90
           E   +  ++  ++++V+W+++ SL    FGL+CC VEM      ++DL RFG    R SP
Sbjct: 32  EALRQNVVMGKLEEMVSWSQSNSLWPFNFGLSCCYVEMATTFTSQFDLARFGAEVIRGSP 91

Query: 91  RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150
           RQ+D+++++GT+  KMA  L R+Y+Q+ EPR+VISMGSCAN GG Y   YSVV+G D+ +
Sbjct: 92  RQADLIVISGTVFRKMAPVLERLYEQLIEPRWVISMGSCANSGGMY-DIYSVVQGVDKFL 150

Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIR 178
           PVD+YV GCPP  +AL+ G++LLQ +I+
Sbjct: 151 PVDVYVQGCPPRPDALLEGLILLQNQIK 178


>gi|271501267|ref|YP_003334292.1| NADH-quinone oxidoreductase subunit B [Dickeya dadantii Ech586]
 gi|307131813|ref|YP_003883829.1| NADH:ubiquinone oxidoreductase subunit B [Dickeya dadantii 3937]
 gi|270344822|gb|ACZ77587.1| NADH-quinone oxidoreductase, B subunit [Dickeya dadantii Ech586]
 gi|306529342|gb|ADM99272.1| NADH:ubiquinone oxidoreductase, chain B [Dickeya dadantii 3937]
          Length = 224

 Score =  197 bits (502), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 75/172 (43%), Positives = 104/172 (60%), Gaps = 5/172 (2%)

Query: 14  QSSCSLEKVDADFSRISSEITHKGF---LVTSVDQLVTWARTGSLMWMTFGLACCAVEMM 70
                L+K +     +   +    F   L  S+  +V W R+ SL    FGL+CC VEM 
Sbjct: 14  NDRYPLQKQEIVSDPLEQHVNRSVFMGNLEQSLHSMVNWGRSNSLWPYNFGLSCCYVEMA 73

Query: 71  QASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSC 129
            +    +D+ RFG    RASPRQ+D M+VAGT   KMA  ++R+YDQM  P++VISMG+C
Sbjct: 74  TSFTSVHDVARFGSEVIRASPRQADFMVVAGTPFLKMAPVIQRLYDQMLAPKWVISMGAC 133

Query: 130 ANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
           AN GG Y   YSVV+G D+ +PVD+Y+PGCPP  EA +  +LLL++ I +  
Sbjct: 134 ANSGGMY-DIYSVVQGVDKFLPVDVYIPGCPPRPEAYMQALLLLKESIGKER 184


>gi|227494504|ref|ZP_03924820.1| NADH dehydrogenase (quinone) [Actinomyces coleocanis DSM 15436]
 gi|226832238|gb|EEH64621.1| NADH dehydrogenase (quinone) [Actinomyces coleocanis DSM 15436]
          Length = 184

 Score =  197 bits (502), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 76/151 (50%), Positives = 110/151 (72%), Gaps = 2/151 (1%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89
            E    G  +TS++ ++  AR  S   +T GLACC++EMM A  PR+D+ RFG    RAS
Sbjct: 4   EESLPSGVALTSIEAVLDLARKHSQWPVTMGLACCSIEMMSAGTPRFDMARFGLEVFRAS 63

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PR +D+MI+AG +++KMA  +RRVYD MPEP++VI+MG+CA+ GG ++  Y++V+G D I
Sbjct: 64  PRHADLMIIAGRMSHKMAPIVRRVYDSMPEPKWVIAMGACASSGGMFNN-YALVQGADHI 122

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           VPVD+Y+PGCPP  EALI  IL+L+++I + 
Sbjct: 123 VPVDVYLPGCPPRPEALINSILVLREQISKE 153


>gi|316935784|ref|YP_004110766.1| NADH-quinone oxidoreductase subunit B [Rhodopseudomonas palustris
           DX-1]
 gi|315603498|gb|ADU46033.1| NADH-quinone oxidoreductase, B subunit [Rhodopseudomonas palustris
           DX-1]
          Length = 208

 Score =  197 bits (501), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 71/152 (46%), Positives = 102/152 (67%), Gaps = 2/152 (1%)

Query: 27  SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP 86
            R   E      L T+++ L  W+R  SL    FGL+CC VE +    P YD  RFG   
Sbjct: 14  QRSVEEHMALSSLFTTLEDLTAWSRKHSLWPFNFGLSCCYVEQVTVLTPVYDQARFGAEV 73

Query: 87  -RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRG 145
            RASPRQ+D+++V+GT+ +KMA+ L R+Y+QM  PR+VI+MG+CA  GG Y   YSVV+G
Sbjct: 74  IRASPRQADLLVVSGTVFHKMAAPLLRLYEQMRAPRWVIAMGACACSGGMY-DIYSVVQG 132

Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
            DR +PVD+Y+PGCPP  EA++  +++LQ+++
Sbjct: 133 VDRFIPVDVYIPGCPPRPEAVLDALIMLQQQV 164


>gi|317123846|ref|YP_004097958.1| NADH dehydrogenase subunit B [Intrasporangium calvum DSM 43043]
 gi|315587934|gb|ADU47231.1| NADH dehydrogenase subunit B [Intrasporangium calvum DSM 43043]
          Length = 184

 Score =  197 bits (501), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 74/151 (49%), Positives = 106/151 (70%), Gaps = 2/151 (1%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89
            E    GFL+++V+ L  + R  S+  +TFGLACCA+EMM    P YD+ RFG     A+
Sbjct: 4   EEKLPAGFLLSTVEGLAGYMRKASMWPVTFGLACCAIEMMAVGTPDYDIARFGMERFSAT 63

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQ+D+MIVAG ++ KMA  +R+VYDQMP P++VISMG CA+ GG ++  Y++V+G D I
Sbjct: 64  PRQADLMIVAGRVSQKMAPVVRQVYDQMPNPKWVISMGVCASSGGMFNN-YAIVQGVDHI 122

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           +PVDIY+PGCPP  + L+  I+ L K+++  
Sbjct: 123 IPVDIYLPGCPPRPQMLLNAIIELHKQVQST 153


>gi|39937323|ref|NP_949599.1| NADH dehydrogenase subunit B [Rhodopseudomonas palustris CGA009]
 gi|192293103|ref|YP_001993708.1| NADH dehydrogenase subunit B [Rhodopseudomonas palustris TIE-1]
 gi|81619355|sp|Q6N1Y9|NUOB2_RHOPA RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName:
           Full=NADH dehydrogenase I subunit B 2; AltName:
           Full=NDH-1 subunit B 2
 gi|238065035|sp|B3Q6T4|NUOB2_RHOPT RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName:
           Full=NADH dehydrogenase I subunit B 2; AltName:
           Full=NDH-1 subunit B 2
 gi|39651181|emb|CAE29704.1| NADH-ubiquinone dehydrogenase chain B [Rhodopseudomonas palustris
           CGA009]
 gi|192286852|gb|ACF03233.1| NADH-quinone oxidoreductase, B subunit [Rhodopseudomonas palustris
           TIE-1]
          Length = 208

 Score =  197 bits (501), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 72/155 (46%), Positives = 103/155 (66%), Gaps = 2/155 (1%)

Query: 24  ADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFG 83
            D  R   E      L T+++ L  W+R  SL    FGL+CC VE +    P YD  RFG
Sbjct: 11  PDEQRSVEEHMALSSLFTTLEDLTAWSRKHSLWPFNFGLSCCYVEQVTVLTPVYDQARFG 70

Query: 84  FAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142
               RASPRQ+D+++V+GT+ +KMA+ L R+Y+QM  PR+VI+MG+CA  GG Y   YSV
Sbjct: 71  AEVIRASPRQADLLVVSGTVFHKMAAPLLRLYEQMRAPRWVIAMGACACSGGMY-DIYSV 129

Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
           V+G DR +PVD+Y+PGCPP  EA++  +++LQ+++
Sbjct: 130 VQGVDRFIPVDVYIPGCPPRPEAVLDALIMLQQQV 164


>gi|116754357|ref|YP_843475.1| NADH-quinone oxidoreductase, B subunit [Methanosaeta thermophila
           PT]
 gi|116665808|gb|ABK14835.1| F420H2 dehydrogenase subunit B [Methanosaeta thermophila PT]
          Length = 190

 Score =  197 bits (501), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 60/160 (37%), Positives = 100/160 (62%)

Query: 25  DFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF 84
           D    ++E  H+   +  +  ++ W R  SL ++   + CC VEM+    P YD +RFG 
Sbjct: 29  DVWFTTTEKIHQIIQMGPIKNVLNWGRKNSLWFLMQPMGCCGVEMLVFGCPHYDCDRFGI 88

Query: 85  APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR 144
            PRA+PRQ+DVMI++G +T K   A++ +++QM EP++ I++G CA  GG ++ SY++++
Sbjct: 89  IPRATPRQADVMIISGYITRKYLPAIKNLWEQMLEPKWCIAVGECAISGGPFYDSYNIIQ 148

Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
                 P+D+YVPGCPP  E  I G + LQ+KI++  + +
Sbjct: 149 NTSDFFPIDVYVPGCPPRPEQFIKGFVELQEKIKQRKDKR 188


>gi|77463673|ref|YP_353177.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit [Rhodobacter
           sphaeroides 2.4.1]
 gi|221639516|ref|YP_002525778.1| NADH dehydrogenase subunit B [Rhodobacter sphaeroides KD131]
 gi|332558529|ref|ZP_08412851.1| NADH dehydrogenase subunit B [Rhodobacter sphaeroides WS8N]
 gi|123591710|sp|Q3J1Q8|NUOB2_RHOS4 RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName:
           Full=NADH dehydrogenase I subunit B 2; AltName:
           Full=NDH-1 subunit B 2
 gi|238065037|sp|B9KJI0|NUOB2_RHOSK RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName:
           Full=NADH dehydrogenase I subunit B 2; AltName:
           Full=NDH-1 subunit B 2
 gi|77388091|gb|ABA79276.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit [Rhodobacter
           sphaeroides 2.4.1]
 gi|221160297|gb|ACM01277.1| NADH-quinone oxidoreductase, B subunit [Rhodobacter sphaeroides
           KD131]
 gi|332276241|gb|EGJ21556.1| NADH dehydrogenase subunit B [Rhodobacter sphaeroides WS8N]
          Length = 205

 Score =  197 bits (501), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 82/163 (50%), Positives = 105/163 (64%), Gaps = 5/163 (3%)

Query: 16  SCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMP 75
           S ++ + DA       +      L T +D LV W+R  SL    FGL+CC VEM  A  P
Sbjct: 2   SWTIGRPDA---EAPEDRMAASHLFTRLDDLVAWSRKHSLWPFNFGLSCCYVEMATALTP 58

Query: 76  RYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGG 134
            YD  RFG    R++PRQ+D++IV+GT+  KMA  L R+Y QM EPR+VISMG+CAN GG
Sbjct: 59  VYDQARFGAEVIRSTPRQADLLIVSGTVFRKMAVPLYRLYSQMREPRWVISMGACANSGG 118

Query: 135 YYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
            Y   YSVV+G D  +PVD+YVPGCPP  EAL+  ++LLQ KI
Sbjct: 119 MY-DIYSVVQGVDSFLPVDVYVPGCPPRPEALMEALVLLQSKI 160


>gi|126462505|ref|YP_001043619.1| NADH dehydrogenase subunit B [Rhodobacter sphaeroides ATCC 17029]
 gi|238065036|sp|A3PKI1|NUOB2_RHOS1 RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName:
           Full=NADH dehydrogenase I subunit B 2; AltName:
           Full=NDH-1 subunit B 2
 gi|126104169|gb|ABN76847.1| NADH-quinone oxidoreductase, B subunit [Rhodobacter sphaeroides
           ATCC 17029]
          Length = 205

 Score =  197 bits (501), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 82/163 (50%), Positives = 105/163 (64%), Gaps = 5/163 (3%)

Query: 16  SCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMP 75
           S ++ + DA       +      L T +D LV W+R  SL    FGL+CC VEM  A  P
Sbjct: 2   SWTIGRPDA---EAPEDRMAASHLFTRLDDLVAWSRKHSLWPFNFGLSCCYVEMATALTP 58

Query: 76  RYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGG 134
            YD  RFG    R++PRQ+D++IV+GT+  KMA  L R+Y QM EPR+VISMG+CAN GG
Sbjct: 59  VYDQARFGAEVIRSTPRQADLLIVSGTVFRKMAVPLYRLYSQMREPRWVISMGACANSGG 118

Query: 135 YYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
            Y   YSVV+G D  +PVD+YVPGCPP  EAL+  ++LLQ KI
Sbjct: 119 MY-DIYSVVQGVDSFLPVDVYVPGCPPRPEALMEALVLLQSKI 160


>gi|319760615|ref|YP_004124553.1| NADH-quinone oxidoreductase, subunit B [Candidatus Blochmannia
           vafer str. BVAF]
 gi|318039329|gb|ADV33879.1| NADH-quinone oxidoreductase, subunit B [Candidatus Blochmannia
           vafer str. BVAF]
          Length = 222

 Score =  197 bits (501), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 77/175 (44%), Positives = 101/175 (57%), Gaps = 2/175 (1%)

Query: 4   TTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLA 63
              N            + V     +   +    G L   + ++V W R  SL    FGL+
Sbjct: 8   VRTNTNDNDQYPLQDQKLVSDPLEKCVQKSVFFGKLTAFLHKIVNWGRGNSLWPYNFGLS 67

Query: 64  CCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122
           CC VEM  A    +D+ RFG    R+SPRQSD M++AGT   KM   ++R+YDQM EP++
Sbjct: 68  CCYVEMTTAFTAVHDVARFGSEVLRSSPRQSDFMVIAGTPFIKMVPVIQRLYDQMLEPKW 127

Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
           VISMG+CAN GG Y   YSVV+G D+ +PVDIY+PGCPP  EA I  +LLL+K I
Sbjct: 128 VISMGACANSGGMY-DIYSVVQGVDKFLPVDIYIPGCPPRPEAYIQALLLLKKSI 181


>gi|90425545|ref|YP_533915.1| NADH-quinone oxidoreductase, B subunit [Rhodopseudomonas palustris
           BisB18]
 gi|122475341|sp|Q20Z40|NUOB2_RHOPB RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName:
           Full=NADH dehydrogenase I subunit B 2; AltName:
           Full=NDH-1 subunit B 2
 gi|90107559|gb|ABD89596.1| NADH-quinone oxidoreductase, B subunit [Rhodopseudomonas palustris
           BisB18]
          Length = 205

 Score =  197 bits (501), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 75/163 (46%), Positives = 108/163 (66%), Gaps = 4/163 (2%)

Query: 16  SCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMP 75
           S +L++   D S    E   +  L   ++ LV W+R  SL    FGL+CC VE + A   
Sbjct: 2   SYTLQRPGEDIS--VEEHMARTSLFARLEDLVAWSRKNSLWPFNFGLSCCYVEQVTALTS 59

Query: 76  RYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGG 134
            YD  RFG    RASPRQ+D+++V+GT+ +KMA+ L R+Y+QM  PR+VISMG+CAN GG
Sbjct: 60  VYDQARFGAEVIRASPRQADLLVVSGTVFHKMAAPLLRLYEQMRAPRWVISMGACANSGG 119

Query: 135 YYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
            Y   YSVV+G D  +PVD+Y+PGCPP  EA++  +++LQ+++
Sbjct: 120 MY-DIYSVVQGVDSFLPVDVYIPGCPPRPEAVLDALIMLQQQV 161


>gi|76811559|ref|YP_334953.1| NADH dehydrogenase subunit B [Burkholderia pseudomallei 1710b]
 gi|76581012|gb|ABA50487.1| NADH-quinone oxidoreductase, B subunit [Burkholderia pseudomallei
           1710b]
          Length = 226

 Score =  197 bits (500), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 104/151 (68%), Positives = 123/151 (81%)

Query: 32  EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPR 91
            +   GF+VT++D  +  A+  SL +MTFGLA CAVEMM A+  RYD++RFG  PRASPR
Sbjct: 66  TLEKDGFIVTTLDAAMAAAQKNSLWYMTFGLARCAVEMMHAAGARYDMDRFGMIPRASPR 125

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
           Q D+MIVAGTLTNKMA A+RRVYDQM EPRYV+SMGSCANGGGYYHY YSVVRGCDRIVP
Sbjct: 126 QCDLMIVAGTLTNKMAPAMRRVYDQMAEPRYVVSMGSCANGGGYYHYGYSVVRGCDRIVP 185

Query: 152 VDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
           VD+YVPGCPPTAEAL+Y ++ LQ+K+     
Sbjct: 186 VDVYVPGCPPTAEALVYDLMQLQRKVAERST 216


>gi|116747649|ref|YP_844336.1| NADH-quinone oxidoreductase subunit B [Syntrophobacter fumaroxidans
           MPOB]
 gi|116696713|gb|ABK15901.1| NADH-quinone oxidoreductase, B subunit [Syntrophobacter
           fumaroxidans MPOB]
          Length = 176

 Score =  197 bits (500), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 79/156 (50%), Positives = 106/156 (67%), Gaps = 5/156 (3%)

Query: 25  DFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF 84
           + +R++ E     F V  ++ ++  AR  SL  MTFGLACCA+EMM A   R+DL+RFG 
Sbjct: 3   EQNRVAPEEPAIQFAV--LEDILNLARANSLWPMTFGLACCAIEMMAAGASRFDLDRFGA 60

Query: 85  -APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS--YS 141
              R SPRQSD+MIVAGT++ KM  A++ ++DQMP P++ I+MG+CA  GG + Y   Y+
Sbjct: 61  GVFRPSPRQSDLMIVAGTISKKMGPAVQMLWDQMPNPKWCIAMGNCAISGGPFEYEGQYA 120

Query: 142 VVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
           +V G   IVPVDI++PGCPP  EALI G L L  KI
Sbjct: 121 IVPGAHLIVPVDIFIPGCPPRPEALIQGFLALGDKI 156


>gi|258514491|ref|YP_003190713.1| NADH-quinone oxidoreductase, B subunit [Desulfotomaculum
           acetoxidans DSM 771]
 gi|257778196|gb|ACV62090.1| NADH-quinone oxidoreductase, B subunit [Desulfotomaculum
           acetoxidans DSM 771]
          Length = 175

 Score =  197 bits (500), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 77/166 (46%), Positives = 115/166 (69%), Gaps = 4/166 (2%)

Query: 14  QSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVE-MMQA 72
            +S  +E++  D   ++     +   +  +++++  AR  S+  M FGLACCA+E +M A
Sbjct: 4   NNSHPIEELTKDPVIVNE--VRRLVQIGPLEKILNLARAHSMWPMAFGLACCAIEALMGA 61

Query: 73  SMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCAN 131
           + PRYDL RFG+   R SPRQ+DVM+VAGT+T K A  + R+Y+QMP+P++VI++GSCA 
Sbjct: 62  TGPRYDLARFGYEVLRPSPRQADVMVVAGTITRKSAPFVVRLYEQMPDPKWVIAVGSCAI 121

Query: 132 GGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
            GG +  SY VV G D+++PVD+YVPGCPP  EA+I G ++L+ KI
Sbjct: 122 SGGPFVDSYYVVPGADKLIPVDVYVPGCPPRPEAVIDGFIMLKNKI 167


>gi|251789015|ref|YP_003003736.1| NADH dehydrogenase subunit B [Dickeya zeae Ech1591]
 gi|247537636|gb|ACT06257.1| NADH-quinone oxidoreductase, B subunit [Dickeya zeae Ech1591]
          Length = 224

 Score =  197 bits (500), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 75/172 (43%), Positives = 104/172 (60%), Gaps = 5/172 (2%)

Query: 14  QSSCSLEKVDADFSRISSEITHKGF---LVTSVDQLVTWARTGSLMWMTFGLACCAVEMM 70
                L+K +     +   +    F   L  S+  +V W R+ SL    FGL+CC VEM 
Sbjct: 14  NDRYPLQKQEIVGDPLEQHVNRSVFMGNLEQSLHSMVNWGRSNSLWPYNFGLSCCYVEMA 73

Query: 71  QASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSC 129
            +    +D+ RFG    RASPRQ+D M+VAGT   KMA  ++R+YDQM  P++VISMG+C
Sbjct: 74  TSFTSVHDVARFGSEVIRASPRQADFMVVAGTPFLKMAPVIQRLYDQMLAPKWVISMGAC 133

Query: 130 ANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
           AN GG Y   YSVV+G D+ +PVD+Y+PGCPP  EA +  +LLL++ I +  
Sbjct: 134 ANSGGMY-DIYSVVQGVDKFLPVDVYIPGCPPRPEAYMQALLLLKESIGKER 184


>gi|182412309|ref|YP_001817375.1| NADH dehydrogenase subunit B [Opitutus terrae PB90-1]
 gi|238065012|sp|B1ZRT2|NUOB1_OPITP RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName:
           Full=NADH dehydrogenase I subunit B 1; AltName:
           Full=NDH-1 subunit B 1
 gi|177839523|gb|ACB73775.1| NADH-quinone oxidoreductase, B subunit [Opitutus terrae PB90-1]
          Length = 171

 Score =  197 bits (500), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 76/164 (46%), Positives = 107/164 (65%), Gaps = 2/164 (1%)

Query: 22  VDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLER 81
           V ++     S     G +V+  D ++ W RT S+  M  GLACCA+E+MQ    R+D+ R
Sbjct: 2   VSSNTDLTYSSAIEGGIVVSKADAVINWIRTNSMWPMPMGLACCAIELMQVGNGRFDIAR 61

Query: 82  FGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSY 140
           FG    R SPRQSD MIVAG++T KMA  +RR+YDQM  P++VI+MG+CA+ GG Y  SY
Sbjct: 62  FGAEVMRFSPRQSDCMIVAGSVTYKMAPQIRRIYDQMMSPKWVIAMGACASSGGMYR-SY 120

Query: 141 SVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           + ++G DRI+PVD+Y+ GCPP  E ++  ++ LQ KIR     +
Sbjct: 121 AHMQGVDRILPVDVYISGCPPRPEGILDALMKLQAKIRTERAGQ 164


>gi|238751247|ref|ZP_04612741.1| NADH-quinone oxidoreductase subunit B [Yersinia rohdei ATCC 43380]
 gi|238788653|ref|ZP_04632445.1| NADH-quinone oxidoreductase subunit B [Yersinia frederiksenii ATCC
           33641]
 gi|238710521|gb|EEQ02745.1| NADH-quinone oxidoreductase subunit B [Yersinia rohdei ATCC 43380]
 gi|238723248|gb|EEQ14896.1| NADH-quinone oxidoreductase subunit B [Yersinia frederiksenii ATCC
           33641]
          Length = 186

 Score =  196 bits (499), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 73/146 (50%), Positives = 99/146 (67%), Gaps = 2/146 (1%)

Query: 37  GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95
           G L  ++  +V W R  SL    FGL+CC VEM+ +    +D+ RFG    RASPRQ+D 
Sbjct: 2   GKLENAMHDMVNWGRKNSLWPYNFGLSCCYVEMVTSFTAVHDVARFGAEVLRASPRQADF 61

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
           M+VAGT   KMA  ++R+Y+QM EP++VISMG+CAN GG Y   YSVV+G D+ +PVD+Y
Sbjct: 62  MVVAGTCFTKMAPVIQRLYEQMLEPKWVISMGACANSGGMY-DIYSVVQGVDKFLPVDVY 120

Query: 156 VPGCPPTAEALIYGILLLQKKIRRVG 181
           +PGCPP  EA +  +LLLQ+ I +  
Sbjct: 121 IPGCPPRPEAYMQALLLLQESIGKER 146


>gi|296124090|ref|YP_003631868.1| NADH-quinone oxidoreductase, subunit beta [Planctomyces limnophilus
           DSM 3776]
 gi|296016430|gb|ADG69669.1| NADH-quinone oxidoreductase, B subunit [Planctomyces limnophilus
           DSM 3776]
          Length = 230

 Score =  196 bits (498), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 70/156 (44%), Positives = 101/156 (64%), Gaps = 2/156 (1%)

Query: 30  SSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RA 88
             +       +T+++   +WAR  SL  M F  ACC +E+M  +  R+DL RFG    R 
Sbjct: 25  PQKGLPDNVFLTTLNAASSWARKNSLWPMPFATACCGIELMATASSRHDLARFGAEVMRF 84

Query: 89  SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 148
           SPRQ D+MIVAG +  KM   L+R++ QMPEP++ ISMG+CA  GG +  +Y+VV+G DR
Sbjct: 85  SPRQCDLMIVAGRVAMKMMPVLQRIWLQMPEPKWCISMGACACTGGVF-DTYAVVQGIDR 143

Query: 149 IVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
            +PVD+YVPGCPP  E LI GI+ +Q  +++ G ++
Sbjct: 144 FIPVDLYVPGCPPRPEQLIAGIMQIQDLVQKTGTMQ 179


>gi|86748473|ref|YP_484969.1| NADH-quinone oxidoreductase, B subunit [Rhodopseudomonas palustris
           HaA2]
 gi|123408621|sp|Q2J0F2|NUOB_RHOP2 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|86571501|gb|ABD06058.1| NADH-quinone oxidoreductase, B subunit [Rhodopseudomonas palustris
           HaA2]
          Length = 208

 Score =  196 bits (498), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 70/140 (50%), Positives = 101/140 (72%), Gaps = 2/140 (1%)

Query: 39  LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMI 97
           L T+++ L  W+R  SL    FGL+CC VE + A  P YD  RFG    RASPRQ+D+++
Sbjct: 26  LFTTLEDLTAWSRKHSLWPFNFGLSCCYVEQVTALTPVYDQARFGAEVIRASPRQADLLV 85

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           V+GT+ +KMA+ L R+Y+QM  PR+VI+MG+CA  GG Y   YSVV+G DR +PVD+Y+P
Sbjct: 86  VSGTVFHKMAAPLLRLYEQMRAPRWVIAMGACACSGGMY-DIYSVVQGVDRFIPVDVYIP 144

Query: 158 GCPPTAEALIYGILLLQKKI 177
           GCPP  EA++  +++LQ+++
Sbjct: 145 GCPPRPEAMLDALIMLQQQV 164


>gi|313679548|ref|YP_004057287.1| NADH dehydrogenase subunit b [Oceanithermus profundus DSM 14977]
 gi|313152263|gb|ADR36114.1| NADH dehydrogenase subunit B [Oceanithermus profundus DSM 14977]
          Length = 184

 Score =  196 bits (498), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 71/136 (52%), Positives = 99/136 (72%)

Query: 29  ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88
           + S+   +  ++ ++D L+  AR+ S+  +TFG+ACCA+EMM    P+ D +RFG   R 
Sbjct: 4   LGSDERPRDIILGTLDDLINMARSRSMWPLTFGIACCAIEMMATWDPKIDADRFGMFFRN 63

Query: 89  SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 148
           +PRQ+DVMIV+GT+  K+A  LRR+YDQM EP++VISMG+CAN GG +   YSVV G D+
Sbjct: 64  TPRQADVMIVSGTVNKKLAKRLRRLYDQMAEPKWVISMGACANQGGPFRQGYSVVEGVDK 123

Query: 149 IVPVDIYVPGCPPTAE 164
           IVPVD+Y+PGCPP  E
Sbjct: 124 IVPVDVYIPGCPPRPE 139


>gi|254670954|emb|CBA07618.1| NADH-ubiquinone oxidoreductase, 20 kDa subunit [Neisseria
           meningitidis alpha153]
          Length = 158

 Score =  196 bits (498), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 93/126 (73%), Positives = 107/126 (84%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           +  KGF+ TS D ++ + RTGSL  +TFGLACCAVEMM A M RYDL+RFG   R SPRQ
Sbjct: 6   VLKKGFITTSADTVLNYMRTGSLWPVTFGLACCAVEMMHAGMARYDLDRFGIIFRPSPRQ 65

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           +D+MIVAGTLTNKMA ALRRVYDQ+ EPR+V+SMGSCANGGGYYHYSYSVVRG DR+VPV
Sbjct: 66  ADLMIVAGTLTNKMAPALRRVYDQLAEPRWVLSMGSCANGGGYYHYSYSVVRGADRVVPV 125

Query: 153 DIYVPG 158
           D+YVPG
Sbjct: 126 DVYVPG 131


>gi|332662314|ref|YP_004445102.1| NAD(P)H-quinone oxidoreductase subunit K [Haliscomenobacter
           hydrossis DSM 1100]
 gi|332331128|gb|AEE48229.1| NAD(P)H-quinone oxidoreductase subunit K [Haliscomenobacter
           hydrossis DSM 1100]
          Length = 179

 Score =  196 bits (498), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 66/154 (42%), Positives = 99/154 (64%), Gaps = 2/154 (1%)

Query: 28  RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-P 86
                 T +GF  TS D+ +  AR  S+  + F  +CC +E M      YDL RFG    
Sbjct: 7   ESPEGHTGQGFFATSFDKAIGLARANSIWPLPFATSCCGIEFMATMGAHYDLARFGSERL 66

Query: 87  RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGC 146
             SPRQ+D+++V GT+  KM   L++VY QM EPR+V+S+G+CA  GG +  +YSV++G 
Sbjct: 67  SFSPRQADLLMVMGTIAKKMGPVLKQVYLQMAEPRWVLSVGACACSGGIF-DTYSVLQGI 125

Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           D+++PVD+YVPGCPPT EA+I G++ +Q+ ++  
Sbjct: 126 DKVIPVDVYVPGCPPTPEAIIDGVMKIQELVKNE 159


>gi|269986278|gb|EEZ92586.1| NADH-quinone oxidoreductase, B subunit [Candidatus Parvarchaeum
           acidiphilum ARMAN-4]
          Length = 172

 Score =  196 bits (498), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 63/144 (43%), Positives = 95/144 (65%), Gaps = 1/144 (0%)

Query: 40  VTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA-SPRQSDVMIV 98
              ++ ++ W R+ SL  +TFG +CCA+EMM     + D +R G      SPRQSD+++V
Sbjct: 21  EKFINTVLNWGRSNSLWPLTFGTSCCAIEMMTFGATKVDADRLGVLFNGDSPRQSDLILV 80

Query: 99  AGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPG 158
           +GT+T KMA  L  VY+Q+P+P+YVI++G+C   GG YH SY+ + G DRI+PVD ++PG
Sbjct: 81  SGTITKKMARRLLNVYEQIPDPKYVIAVGACNVSGGLYHDSYNTIEGIDRIMPVDAFIPG 140

Query: 159 CPPTAEALIYGILLLQKKIRRVGN 182
           CPP  E  +  + +LQK I+   +
Sbjct: 141 CPPRPEEFLDAVRVLQKLIKENRS 164


>gi|183220687|ref|YP_001838683.1| NADH dehydrogenase subunit B [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
 gi|189910788|ref|YP_001962343.1| NADH dehydrogenase subunit B [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|238065164|sp|B0SFT5|NUOB_LEPBA RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|238065165|sp|B0SP83|NUOB_LEPBP RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|167775464|gb|ABZ93765.1| NADH dehydrogenase (ubiquinone), B chain [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Ames)']
 gi|167779109|gb|ABZ97407.1| NADH-quinone oxidoreductase chain B [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Paris)']
          Length = 186

 Score =  196 bits (498), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 71/153 (46%), Positives = 105/153 (68%), Gaps = 2/153 (1%)

Query: 30  SSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRA 88
             E+    F V ++D +V W ++ SL    F  ACC +E M  +   YD+ RFG   P  
Sbjct: 10  PGEMFGDMFQVATLDNVVQWGQSFSLWPYPFATACCGIEYMSTACADYDIARFGAERPSF 69

Query: 89  SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 148
           SPRQ+D+++V GT+T KMA  LR++YDQ+ EP++VIS+G+CA+ GG +H +Y V++G DR
Sbjct: 70  SPRQADMILVLGTITYKMAPVLRQIYDQLAEPKFVISVGACASSGGMFH-TYGVLQGVDR 128

Query: 149 IVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
           I+PVD+YVPGCPP  EA++  ++ LQKK++  G
Sbjct: 129 ILPVDVYVPGCPPRPEAILDALVKLQKKVQSQG 161


>gi|91975807|ref|YP_568466.1| NADH-quinone oxidoreductase, B subunit [Rhodopseudomonas palustris
           BisB5]
 gi|123735640|sp|Q13BH4|NUOB1_RHOPS RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName:
           Full=NADH dehydrogenase I subunit B 1; AltName:
           Full=NDH-1 subunit B 1
 gi|91682263|gb|ABE38565.1| NADH-quinone oxidoreductase, B subunit [Rhodopseudomonas palustris
           BisB5]
          Length = 208

 Score =  196 bits (498), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 75/162 (46%), Positives = 108/162 (66%), Gaps = 3/162 (1%)

Query: 17  CSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPR 76
            ++    AD   +  E   +  L T+++ L  W+R  SL    FGL+CC VE +    P 
Sbjct: 5   PAIPPTPADSMSV-EEHMARSNLFTTLEDLTAWSRKHSLWPFNFGLSCCYVEQVTVLTPV 63

Query: 77  YDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY 135
           YD  RFG    RASPRQ+D+++V+GT+ +KMA+ L R+Y+QM  PR+VISMG+CAN GG 
Sbjct: 64  YDQARFGAEVIRASPRQADLLVVSGTVFHKMAAPLLRLYEQMRAPRWVISMGACANSGGM 123

Query: 136 YHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
           Y   YSVV+G DR +PVD+Y+PGCPP  EA++  +++LQ++I
Sbjct: 124 Y-DIYSVVQGVDRFIPVDVYIPGCPPRPEAMLDALIMLQQQI 164


>gi|147744666|gb|ABQ51200.1| NADH dehydrogenase (ubiquinone) Fe-S protein 7 [Capra hircus]
          Length = 183

 Score =  195 bits (497), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 97/146 (66%), Positives = 115/146 (78%), Gaps = 1/146 (0%)

Query: 12  SGQSSCSLEKVDADFSRISSEITHKG-FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMM 70
              +  ++ +  A   + ++  + +G ++V  +D L+ WAR  SL  MTFGLACCAVEMM
Sbjct: 38  PSSTQPAVSQARAVVPKPAALPSSRGEYVVAKLDDLINWARRSSLWPMTFGLACCAVEMM 97

Query: 71  QASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCA 130
             + PRYD++RFG   RASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYV+SMGSCA
Sbjct: 98  HMAAPRYDMDRFGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCA 157

Query: 131 NGGGYYHYSYSVVRGCDRIVPVDIYV 156
           NGGGYYHYSYSVVRGCDRIVPVDIYV
Sbjct: 158 NGGGYYHYSYSVVRGCDRIVPVDIYV 183


>gi|312890395|ref|ZP_07749932.1| NADH dehydrogenase subunit B [Mucilaginibacter paludis DSM 18603]
 gi|311297165|gb|EFQ74297.1| NADH dehydrogenase subunit B [Mucilaginibacter paludis DSM 18603]
          Length = 180

 Score =  195 bits (497), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 70/158 (44%), Positives = 100/158 (63%), Gaps = 2/158 (1%)

Query: 22  VDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLER 81
            D         +   GF  TS+D+ V  AR+ SL  + F  +CC +E M      YDL R
Sbjct: 2   SDIQIVEAPPGVEGSGFFATSLDKAVGLARSYSLWPLPFATSCCGIEFMATMGSHYDLSR 61

Query: 82  FGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSY 140
           FG      SPRQ+D+++V GT+  KMA  LR+VY QM EPR+V+++G+CA+ GG +  +Y
Sbjct: 62  FGAERLSFSPRQADLLMVMGTIAKKMAPVLRQVYLQMAEPRWVMAVGACASSGGIF-DTY 120

Query: 141 SVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           SV++G D I+PVD+YVPGCPP  EA+I G + +QK ++
Sbjct: 121 SVLQGIDEIIPVDVYVPGCPPRPEAIIDGFMNIQKLVQ 158


>gi|302348182|ref|YP_003815820.1| NADH-quinone oxidoreductase subunit B subunit [Acidilobus
           saccharovorans 345-15]
 gi|302328594|gb|ADL18789.1| NADH-quinone oxidoreductase subunit B subunit [Acidilobus
           saccharovorans 345-15]
          Length = 210

 Score =  195 bits (497), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 63/154 (40%), Positives = 102/154 (66%), Gaps = 1/154 (0%)

Query: 28  RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
            +++++  +  +  ++ ++V WA   SL  +    +CC  E+  A  PR+D ER+G  P 
Sbjct: 24  EVAAQLAKESLIKGTIAKVVDWATAFSLWPVHLMTSCCGCEIGAAWGPRFDNERYGSLPW 83

Query: 88  ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCD 147
            SPRQ++++I+ GT+T KMA  +R  ++QMP P++VI+MG+C+  GG ++ SY++VR   
Sbjct: 84  VSPRQTNLIIIEGTVTKKMACTVRITWEQMPFPKFVIAMGACSLDGGIFYNSYNIVRPW- 142

Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
           ++VPVDIY+PGCPP  EA+   I+ LQK IR  G
Sbjct: 143 QVVPVDIYIPGCPPRPEAVARSIVELQKIIRSRG 176


>gi|115523729|ref|YP_780640.1| NADH-quinone oxidoreductase, B subunit [Rhodopseudomonas palustris
           BisA53]
 gi|122296835|sp|Q07QX4|NUOB1_RHOP5 RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName:
           Full=NADH dehydrogenase I subunit B 1; AltName:
           Full=NDH-1 subunit B 1
 gi|115517676|gb|ABJ05660.1| NADH-quinone oxidoreductase, B subunit [Rhodopseudomonas palustris
           BisA53]
          Length = 205

 Score =  195 bits (497), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 73/148 (49%), Positives = 103/148 (69%), Gaps = 2/148 (1%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RAS 89
            E   +  L T ++ LV W+R  SL    FGL+CC VE + A  P +D  RFG    RAS
Sbjct: 15  EEQMARTSLFTRLEDLVAWSRKNSLWPFNFGLSCCYVEQVTALTPVFDQARFGAEVIRAS 74

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQ+D+++V+GT+ +KMA+ L R+Y+QM  PR+VISMG+CAN GG Y   YSVV+G D  
Sbjct: 75  PRQADLLVVSGTVFHKMAAPLLRLYEQMRAPRWVISMGACANSGGMY-DVYSVVQGVDSF 133

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKI 177
           +PVD+Y+PGCPP  EA++  ++LLQ+++
Sbjct: 134 LPVDVYIPGCPPRPEAVLDALILLQQQV 161


>gi|15921820|ref|NP_377489.1| NADH-ubiquinone oxidoreductase subunit K [Sulfolobus tokodaii str.
           7]
 gi|15622607|dbj|BAB66598.1| 173aa long hypothetical NADH-ubiquinone oxidoreductase subunit K
           [Sulfolobus tokodaii str. 7]
          Length = 173

 Score =  195 bits (497), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 64/163 (39%), Positives = 92/163 (56%)

Query: 22  VDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLER 81
           +  +    S +          +  L+ W  + SL       +CC  E    +  R+D ER
Sbjct: 7   LTGNLQEASKKAIQWLINRKPIKNLIDWGISFSLWPPHLTTSCCGTEFGAFAAARFDAER 66

Query: 82  FGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYS 141
           FG  P +S RQ++++++ GTLT KMA A + VYDQMPEP++VI+MG+C+  GG +  SY+
Sbjct: 67  FGVLPFSSARQTNLLVIEGTLTRKMARAAKIVYDQMPEPKWVIAMGACSLEGGIFWNSYN 126

Query: 142 VVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
            V   +  +PVDIY PGCP   EAL   I+ LQK+IR    VK
Sbjct: 127 TVLPSEIGIPVDIYAPGCPTRPEALARAIITLQKRIRSNQTVK 169


>gi|330830046|ref|YP_004392998.1| NADH-quinone oxidoreductase subunit B [Aeromonas veronii B565]
 gi|328805182|gb|AEB50381.1| NADH-quinone oxidoreductase subunit B [Aeromonas veronii B565]
          Length = 224

 Score =  195 bits (497), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 74/181 (40%), Positives = 107/181 (59%), Gaps = 3/181 (1%)

Query: 3   LTTVNQ-KIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFG 61
           LT ++    +        + VD   ++ ++     G L   +   V W R  SL    FG
Sbjct: 5   LTRIDPDAPVERYPQEQRQTVDDPLAQEATRGIMMGRLEEVLQDTVNWGRKNSLWPYNFG 64

Query: 62  LACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           ++CC VEM  A    +D+ RFG    RASPRQ+D M++AGT   KMA  ++R+Y+Q+ EP
Sbjct: 65  ISCCYVEMCTAFTSPHDVARFGAEVIRASPRQADFMVIAGTPFIKMAPVIQRLYEQLLEP 124

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           ++VISMG+CAN GG Y   YSVV+G D+ +PVD+Y+PGCPP  EA +  ++LLQ  I + 
Sbjct: 125 KWVISMGACANSGGMY-DIYSVVQGVDKFLPVDVYIPGCPPRPEAFLQALMLLQDSIGKE 183

Query: 181 G 181
            
Sbjct: 184 R 184


>gi|326799001|ref|YP_004316820.1| NAD(P)H-quinone oxidoreductase subunit K [Sphingobacterium sp. 21]
 gi|326549765|gb|ADZ78150.1| NAD(P)H-quinone oxidoreductase subunit K [Sphingobacterium sp. 21]
          Length = 183

 Score =  195 bits (497), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 70/160 (43%), Positives = 101/160 (63%), Gaps = 2/160 (1%)

Query: 22  VDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLER 81
            D   +     +T  GF  T++D+ V  AR  SL  + F  +CC +E M      YDL R
Sbjct: 2   SDIKLAPPPPGVTGSGFFATTLDKAVGLARANSLWPLPFATSCCGIEFMATMGATYDLAR 61

Query: 82  FGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSY 140
           FG   P  SPRQSD+++V GT+  KM   L++VY QM EPR+VI++G+CA+ GG +  +Y
Sbjct: 62  FGAERPSFSPRQSDMLLVMGTIAKKMGPVLKQVYIQMAEPRWVIAVGACASSGGIF-DTY 120

Query: 141 SVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           SV++G D ++PVD+YVPGCPP  EA++ G++ LQ  +R  
Sbjct: 121 SVLQGIDEVIPVDVYVPGCPPRPEAILDGVMRLQDIVRNE 160


>gi|119719986|ref|YP_920481.1| NADH-quinone oxidoreductase, B subunit [Thermofilum pendens Hrk 5]
 gi|119525106|gb|ABL78478.1| NADH-quinone oxidoreductase, B subunit [Thermofilum pendens Hrk 5]
          Length = 171

 Score =  195 bits (497), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 68/139 (48%), Positives = 96/139 (69%), Gaps = 1/139 (0%)

Query: 41  TSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAG 100
           T +  L  WA T SL  + F  +CC  E    S PR+D ERFGF P  SPRQ+++M++ G
Sbjct: 28  TPIRSLRDWAITFSLWPVHFTTSCCGAEFAATSAPRFDAERFGFLPFNSPRQTNLMVIEG 87

Query: 101 TLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCP 160
           TLT KM  A + VYDQMP P++VI+MG+CA  GG ++ SY++VR  D I+PV+ ++PGCP
Sbjct: 88  TLTKKMGEAAKIVYDQMPWPKFVIAMGACAIDGGLFYNSYNIVRPKD-ILPVEYFIPGCP 146

Query: 161 PTAEALIYGILLLQKKIRR 179
           P  EA+   I++LQ+K+R+
Sbjct: 147 PRPEAVAQAIIMLQEKVRK 165


>gi|51892725|ref|YP_075416.1| NADH dehydrogenase I subunit B [Symbiobacterium thermophilum IAM
           14863]
 gi|51856414|dbj|BAD40572.1| NADH dehydrogenase I subunit B [Symbiobacterium thermophilum IAM
           14863]
          Length = 153

 Score =  195 bits (497), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 73/144 (50%), Positives = 110/144 (76%), Gaps = 3/144 (2%)

Query: 39  LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQ-ASMPRYDLERFGFA-PRASPRQSDVM 96
           + T+VD  + WA++ S+  +TFGLACCA+EMM  AS PRYD+ RFG    RASPRQ+D++
Sbjct: 1   MTTTVDSFLRWAQSNSIWPLTFGLACCAIEMMNLASGPRYDIARFGSEAFRASPRQADLI 60

Query: 97  IVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV 156
            ++G ++NKMA  ++RVY QM EP++V++ G+CA+ GG +  +Y++++G D ++PVDIYV
Sbjct: 61  FISGRVSNKMAPVIKRVYSQMLEPKWVVAFGACASSGGIF-DNYAIMQGVDNLLPVDIYV 119

Query: 157 PGCPPTAEALIYGILLLQKKIRRV 180
           PGCPPT EA+IY +  L+ +IR+ 
Sbjct: 120 PGCPPTPEAVIYAVQKLRDRIRKE 143


>gi|126640811|ref|YP_001083795.1| NADH dehydrogenase I chain B [Acinetobacter baumannii ATCC 17978]
          Length = 189

 Score =  195 bits (497), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 75/144 (52%), Positives = 98/144 (68%), Gaps = 6/144 (4%)

Query: 40  VTSVDQL----VTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSD 94
           +T ++ +    V W R  SL    FG +CC VE        +DL RFG    RASPRQ+D
Sbjct: 1   MTRLEDVLHTAVNWGRKNSLWPFNFGTSCCYVEYATTLTGVHDLSRFGAEVIRASPRQAD 60

Query: 95  VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154
           +MIVAGT   KMA  ++R+Y+QM EP++VISMG+CAN GG Y   YSVV+G D+I+PVD+
Sbjct: 61  LMIVAGTCFVKMAPVIQRLYEQMLEPKWVISMGACANSGGMY-DIYSVVQGVDKIIPVDV 119

Query: 155 YVPGCPPTAEALIYGILLLQKKIR 178
           YVPGCPP  EALI  ++LLQ +I+
Sbjct: 120 YVPGCPPRPEALIQALMLLQDQIQ 143


>gi|256425967|ref|YP_003126620.1| NADH dehydrogenase subunit B [Chitinophaga pinensis DSM 2588]
 gi|256040875|gb|ACU64419.1| NADH-quinone oxidoreductase, B subunit [Chitinophaga pinensis DSM
           2588]
          Length = 187

 Score =  195 bits (496), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 64/153 (41%), Positives = 101/153 (66%), Gaps = 2/153 (1%)

Query: 29  ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88
           +    + +GF  T+ DQ++  AR  S+  + F  +CC +E M      YD+ RFG    A
Sbjct: 16  VPEGYSGEGFFATTFDQVIGLARKNSIWPLPFATSCCGIEFMATMASTYDMSRFGSERMA 75

Query: 89  -SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCD 147
            +PRQ D+++V GT++ KMA  LR+VY QM EPR+V+++G+CA+ GG +  +YSV++G D
Sbjct: 76  FTPRQCDLLMVMGTISKKMAPVLRQVYLQMAEPRWVVAVGACASSGGVF-DTYSVLQGID 134

Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           +++PVD+YVPGCPP  EA+I G + +Q  + + 
Sbjct: 135 QVIPVDVYVPGCPPRPEAIIDGFMRVQDLVGQE 167


>gi|171186232|ref|YP_001795151.1| NADH-quinone oxidoreductase, B subunit [Thermoproteus neutrophilus
           V24Sta]
 gi|170935444|gb|ACB40705.1| NADH-quinone oxidoreductase, B subunit [Thermoproteus neutrophilus
           V24Sta]
          Length = 182

 Score =  195 bits (496), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 63/150 (42%), Positives = 94/150 (62%), Gaps = 1/150 (0%)

Query: 29  ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88
           +S  +         +++L  W    SL  +    +CC VE+   S P +D ER+G  P  
Sbjct: 1   MSQALREFLMRKAKLEKLFKWGVRWSLWPVHLVTSCCGVEVAHTSGPGFDAERWGVLPFH 60

Query: 89  SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 148
           + RQS+V++V GT+T KMA  L+ VY+QMPEP+YV++MG+CA  GG +  SY VV+  D 
Sbjct: 61  TMRQSNVILVEGTITRKMARVLKMVYEQMPEPKYVLAMGACAVRGGLFWNSYHVVQ-VDT 119

Query: 149 IVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           ++PVD+Y+ GCPPT EA+I   ++L  KI+
Sbjct: 120 VLPVDVYIAGCPPTPEAVIRAFMMLHNKIK 149


>gi|301059635|ref|ZP_07200544.1| NADH dehydrogenase subunit B [delta proteobacterium NaphS2]
 gi|300446281|gb|EFK10137.1| NADH dehydrogenase subunit B [delta proteobacterium NaphS2]
          Length = 176

 Score =  195 bits (495), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 77/137 (56%), Positives = 100/137 (72%), Gaps = 3/137 (2%)

Query: 44  DQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQSDVMIVAGTL 102
           ++L    R  SL  MTFGLACCA+EMM   M R+DL RFG    R SPRQSD+MIVAGT+
Sbjct: 25  EKLQNVCRAMSLWPMTFGLACCAIEMMSVGMARFDLARFGAEVFRPSPRQSDLMIVAGTV 84

Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH--YSYSVVRGCDRIVPVDIYVPGCP 160
           T+K+A A+ R+Y+QMP P++VI+MG+CA  GG +     Y+V+ G D+I+PVD+YVPGCP
Sbjct: 85  THKLAPAIERLYEQMPAPKWVIAMGNCAISGGPFKFPGQYAVLEGVDKIIPVDVYVPGCP 144

Query: 161 PTAEALIYGILLLQKKI 177
              EAL+ G+  LQKKI
Sbjct: 145 ARPEALLEGLFELQKKI 161


>gi|24372606|ref|NP_716648.1| NADH dehydrogenase subunit B [Shewanella oneidensis MR-1]
 gi|81589369|sp|Q8EI30|NUOB_SHEON RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|24346631|gb|AAN54093.1|AE015546_10 NADH dehydrogenase I, B subunit [Shewanella oneidensis MR-1]
          Length = 224

 Score =  195 bits (495), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 74/181 (40%), Positives = 107/181 (59%), Gaps = 3/181 (1%)

Query: 3   LTTVNQ-KIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFG 61
           LT ++    +        + VD   ++ ++     G L   +   V W R  SL    FG
Sbjct: 5   LTRIDPDAPVERYPQEQRQTVDDPLAQEATRGIMMGRLEEVLKDTVNWGRKNSLWPYNFG 64

Query: 62  LACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           ++CC VEM  A    +D+ RFG    RASPRQ+D M++AGT   KMA  ++R+Y+Q+ EP
Sbjct: 65  ISCCYVEMCTAFTSPHDVARFGAEVIRASPRQADFMVIAGTPFIKMAPVIQRLYEQLLEP 124

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           ++VISMG+CAN GG Y   YSVV+G D+ +PVD+Y+PGCPP  EA +  ++LLQ  I + 
Sbjct: 125 KWVISMGACANSGGMY-DIYSVVQGVDKFLPVDVYIPGCPPRPEAFLQALMLLQDSIGKE 183

Query: 181 G 181
            
Sbjct: 184 R 184


>gi|145298722|ref|YP_001141563.1| NADH dehydrogenase subunit B [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|238065069|sp|A4SLP3|NUOB_AERS4 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|142851494|gb|ABO89815.1| NADH dehydrogenase I, B subunit [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 224

 Score =  194 bits (494), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 74/181 (40%), Positives = 107/181 (59%), Gaps = 3/181 (1%)

Query: 3   LTTVNQ-KIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFG 61
           LT ++    +        + VD   ++ ++     G L   +   V W R  SL    FG
Sbjct: 5   LTRIDPDAPVERYPQEQSQTVDDPLAQDATRGIMMGRLEEVLQDTVNWGRKNSLWPYNFG 64

Query: 62  LACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           ++CC VEM  A    +D+ RFG    RASPRQ+D M++AGT   KMA  ++R+Y+Q+ EP
Sbjct: 65  ISCCYVEMCTAFTSPHDVARFGAEVIRASPRQADFMVIAGTPFIKMAPVIQRLYEQLLEP 124

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           ++VISMG+CAN GG Y   YSVV+G D+ +PVD+Y+PGCPP  EA +  ++LLQ  I + 
Sbjct: 125 KWVISMGACANSGGMY-DIYSVVQGVDKFLPVDVYIPGCPPRPEAFLQALMLLQDSIGKE 183

Query: 181 G 181
            
Sbjct: 184 R 184


>gi|162148253|ref|YP_001602714.1| NADH dehydrogenase subunit B [Gluconacetobacter diazotrophicus PAl
           5]
 gi|209542893|ref|YP_002275122.1| NADH dehydrogenase subunit B [Gluconacetobacter diazotrophicus PAl
           5]
 gi|238065010|sp|A9HN98|NUOB1_GLUDA RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName:
           Full=NADH dehydrogenase I subunit B 1; AltName:
           Full=NDH-1 subunit B 1
 gi|161786830|emb|CAP56413.1| putative NADH-quinone oxidoreductase chain B [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209530570|gb|ACI50507.1| NADH-quinone oxidoreductase, B subunit [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 211

 Score =  194 bits (494), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 70/163 (42%), Positives = 104/163 (63%), Gaps = 2/163 (1%)

Query: 16  SCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMP 75
           +   E+         +E   +  ++  +   V+W +  S+    FGL+CC VEM  A   
Sbjct: 6   TRPGEEPGTPRDATMTETVKRNLVMGRLQDFVSWGQKNSIWPFNFGLSCCYVEMATAFTS 65

Query: 76  RYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGG 134
           +YD+ RFG    RA+PR++D+++++GT+  KMA  ++ +YDQM EPR+VISMGSCAN GG
Sbjct: 66  KYDIARFGSEVLRATPREADLIVISGTVFVKMAPIVKYLYDQMLEPRWVISMGSCANSGG 125

Query: 135 YYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
            Y   YSVV+G D  +PVD+YVPGCPP  +AL+ G++LLQ  +
Sbjct: 126 MY-DIYSVVQGVDSFLPVDVYVPGCPPRPDALLEGLMLLQDSV 167


>gi|15897574|ref|NP_342179.1| NADH dehydrogenase subunit B (NuoB) [Sulfolobus solfataricus P2]
 gi|284174895|ref|ZP_06388864.1| NADH dehydrogenase subunit B (NuoB) [Sulfolobus solfataricus 98/2]
 gi|6015810|emb|CAB57637.1| hypothetical protein [Sulfolobus solfataricus P2]
 gi|13813833|gb|AAK40969.1| NADH dehydrogenase subunit B (NuoB) [Sulfolobus solfataricus P2]
 gi|261602337|gb|ACX91940.1| NADH-quinone oxidoreductase, B subunit [Sulfolobus solfataricus
           98/2]
          Length = 170

 Score =  194 bits (494), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 64/161 (39%), Positives = 95/161 (59%)

Query: 24  ADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFG 83
            + + ++ +          +  ++ W  + SL    F  +CC  E    +  R+D ER+G
Sbjct: 9   GNLNEVAKKAAQWLINRKPIKSIIDWGISFSLWPPHFTTSCCGTEFGAFAAARFDAERYG 68

Query: 84  FAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVV 143
             P +S RQS+++I+ GTL+ KM  A R VYDQMPEP+YVI++G+C   GG +  SY+ V
Sbjct: 69  MLPFSSARQSNILILEGTLSRKMGRAARIVYDQMPEPKYVIALGACILEGGIFWNSYNTV 128

Query: 144 RGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
              D  +PVD+YVPGCP   EA+   +L+LQKKIR  G +K
Sbjct: 129 LPSDIGIPVDLYVPGCPIRPEAVARAVLMLQKKIRTQGALK 169


>gi|284039943|ref|YP_003389873.1| NADH-quinone oxidoreductase subunit beta [Spirosoma linguale DSM
           74]
 gi|283819236|gb|ADB41074.1| NADH-quinone oxidoreductase, B subunit [Spirosoma linguale DSM 74]
          Length = 181

 Score =  194 bits (494), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 67/159 (42%), Positives = 101/159 (63%), Gaps = 2/159 (1%)

Query: 23  DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82
           D   +   +     GF  TS D+++  AR  SL  + F  +CC +E M      YDL RF
Sbjct: 4   DIKLAEAPASYDGPGFSATSFDKIIGLARANSLWPLPFATSCCGIEFMSTMASHYDLARF 63

Query: 83  GFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYS 141
           G   P  SPRQ+D+++VAGT+  KM   +++VY QM EPR+VI++G+CA+ GG +  +YS
Sbjct: 64  GSERPSFSPRQADMLLVAGTIAKKMGPIVKQVYLQMAEPRWVIAIGACASSGGIF-DTYS 122

Query: 142 VVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           V++G DRI+PVD+YVPGCPP  E ++ G++ +Q+  +  
Sbjct: 123 VLQGIDRIIPVDVYVPGCPPRPEQILEGVMQVQELAKNE 161


>gi|254259706|ref|ZP_04950760.1| putative NADH-quinone oxidoreductase, B subunit [Burkholderia
           pseudomallei 1710a]
 gi|218528075|sp|Q3JNA0|NUOB2_BURP1 RecName: Full=Putative NADH-quinone oxidoreductase subunit B 2;
           AltName: Full=NADH dehydrogenase I subunit B 2; AltName:
           Full=NDH-1 subunit B 2
 gi|254218395|gb|EET07779.1| putative NADH-quinone oxidoreductase, B subunit [Burkholderia
           pseudomallei 1710a]
          Length = 167

 Score =  194 bits (494), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 104/151 (68%), Positives = 123/151 (81%)

Query: 32  EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPR 91
            +   GF+VT++D  +  A+  SL +MTFGLA CAVEMM A+  RYD++RFG  PRASPR
Sbjct: 7   TLEKDGFIVTTLDAAMAAAQKNSLWYMTFGLARCAVEMMHAAGARYDMDRFGMIPRASPR 66

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
           Q D+MIVAGTLTNKMA A+RRVYDQM EPRYV+SMGSCANGGGYYHY YSVVRGCDRIVP
Sbjct: 67  QCDLMIVAGTLTNKMAPAMRRVYDQMAEPRYVVSMGSCANGGGYYHYGYSVVRGCDRIVP 126

Query: 152 VDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
           VD+YVPGCPPTAEAL+Y ++ LQ+K+     
Sbjct: 127 VDVYVPGCPPTAEALVYDLMQLQRKVAERST 157


>gi|323698263|ref|ZP_08110175.1| NADH-quinone oxidoreductase, B subunit [Desulfovibrio sp. ND132]
 gi|323458195|gb|EGB14060.1| NADH-quinone oxidoreductase, B subunit [Desulfovibrio desulfuricans
           ND132]
          Length = 181

 Score =  194 bits (494), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 72/141 (51%), Positives = 97/141 (68%), Gaps = 3/141 (2%)

Query: 40  VTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQSDVMIV 98
           +     ++   R  SL  MTFGLACCA+EMM   M R+D+ RFG    R SPRQSDVMIV
Sbjct: 27  MKLAQDIMNVCRAMSLWPMTFGLACCAIEMMATGMARFDMARFGAEVFRPSPRQSDVMIV 86

Query: 99  AGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY--HYSYSVVRGCDRIVPVDIYV 156
           AGT+  KMA ++ R+Y+QMP P++VI+MG+CA  GG +    +Y+V++G D ++PVD+YV
Sbjct: 87  AGTVNKKMAPSVVRLYEQMPGPKWVIAMGNCAISGGPFKIKDNYNVIQGVDTLIPVDVYV 146

Query: 157 PGCPPTAEALIYGILLLQKKI 177
           PGCPP  E L+ G   LQ+ I
Sbjct: 147 PGCPPRPEGLLEGFFELQRLI 167


>gi|227488707|ref|ZP_03919023.1| NADH dehydrogenase subunit B [Corynebacterium glucuronolyticum ATCC
           51867]
 gi|227542294|ref|ZP_03972343.1| NADH dehydrogenase subunit B [Corynebacterium glucuronolyticum ATCC
           51866]
 gi|227091368|gb|EEI26680.1| NADH dehydrogenase subunit B [Corynebacterium glucuronolyticum ATCC
           51867]
 gi|227181894|gb|EEI62866.1| NADH dehydrogenase subunit B [Corynebacterium glucuronolyticum ATCC
           51866]
          Length = 189

 Score =  194 bits (493), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 74/154 (48%), Positives = 103/154 (66%), Gaps = 2/154 (1%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89
            +    G+L T+ + L    R  S+   TFGLACCA EMM  + PRYD  R+G    RAS
Sbjct: 4   EDNLKGGYLTTTTEWLFGLTREWSVWPATFGLACCAFEMMSYAGPRYDSSRWGQEVFRAS 63

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQ+D++IV+G ++ KMA  +RRVYDQMP+P++VI+MG+C++ GG ++  Y++V+G D I
Sbjct: 64  PRQADLLIVSGRVSQKMAPIMRRVYDQMPDPKWVIAMGACSSSGGIFNN-YAIVQGADHI 122

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           VPVD+YVPGCPP  E LI     L+  I +   V
Sbjct: 123 VPVDVYVPGCPPRPEMLIDASFKLRAIIAKQTKV 156


>gi|228930306|ref|ZP_04093311.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
           [Bacillus thuringiensis serovar pondicheriensis BGSC
           4BA1]
 gi|228982015|ref|ZP_04142308.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
           [Bacillus thuringiensis Bt407]
 gi|229020517|ref|ZP_04177264.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
           [Bacillus cereus AH1273]
 gi|229026735|ref|ZP_04183071.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
           [Bacillus cereus AH1272]
 gi|229033931|ref|ZP_04188885.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
           [Bacillus cereus AH1271]
 gi|229158859|ref|ZP_04286917.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
           [Bacillus cereus ATCC 4342]
 gi|229164245|ref|ZP_04292178.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
           [Bacillus cereus R309803]
 gi|229187525|ref|ZP_04314665.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
           [Bacillus cereus BGSC 6E1]
 gi|229193551|ref|ZP_04320495.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
           [Bacillus cereus ATCC 10876]
 gi|228589856|gb|EEK47731.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
           [Bacillus cereus ATCC 10876]
 gi|228595892|gb|EEK53572.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
           [Bacillus cereus BGSC 6E1]
 gi|228619185|gb|EEK76078.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
           [Bacillus cereus R309803]
 gi|228624843|gb|EEK81612.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
           [Bacillus cereus ATCC 4342]
 gi|228728357|gb|EEL79379.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
           [Bacillus cereus AH1271]
 gi|228734566|gb|EEL85224.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
           [Bacillus cereus AH1272]
 gi|228740788|gb|EEL91039.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
           [Bacillus cereus AH1273]
 gi|228777679|gb|EEM25953.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
           [Bacillus thuringiensis Bt407]
 gi|228829349|gb|EEM74981.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
           [Bacillus thuringiensis serovar pondicheriensis BGSC
           4BA1]
          Length = 133

 Score =  194 bits (493), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 81/121 (66%), Positives = 97/121 (80%)

Query: 58  MTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQM 117
           MTFGLACCA+EMM      YDL+RFG   R SPRQSDVMIV+GT+T KMA  +RR+YDQM
Sbjct: 1   MTFGLACCAIEMMGVGSSHYDLDRFGSFFRTSPRQSDVMIVSGTVTKKMAPIVRRLYDQM 60

Query: 118 PEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
           PEP++VI+MGSCA  GG Y  SY+VV+G D+IVPVD+Y+PGCPP   ALIYGI  L++KI
Sbjct: 61  PEPKWVIAMGSCATAGGPYVNSYAVVKGVDQIVPVDVYIPGCPPNPAALIYGINKLKEKI 120

Query: 178 R 178
           R
Sbjct: 121 R 121


>gi|229007607|ref|ZP_04165201.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
           [Bacillus mycoides Rock1-4]
 gi|229087789|ref|ZP_04219909.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
           [Bacillus cereus Rock3-44]
 gi|228695517|gb|EEL48382.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
           [Bacillus cereus Rock3-44]
 gi|228753618|gb|EEM03062.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
           [Bacillus mycoides Rock1-4]
          Length = 133

 Score =  193 bits (492), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 81/121 (66%), Positives = 97/121 (80%)

Query: 58  MTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQM 117
           MTFGLACCA+EMM      YDL+RFG   R SPRQSDVMIV+GT+T KMA  +RR+YDQM
Sbjct: 1   MTFGLACCAIEMMGVGSSHYDLDRFGSFFRTSPRQSDVMIVSGTVTKKMAPIVRRLYDQM 60

Query: 118 PEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
           PEP++VI+MGSCA  GG Y  SY+VV+G D+IVPVD+Y+PGCPP   ALIYGI  L++KI
Sbjct: 61  PEPKWVIAMGSCATAGGPYVNSYAVVKGVDQIVPVDVYIPGCPPNPAALIYGINKLKEKI 120

Query: 178 R 178
           R
Sbjct: 121 R 121


>gi|229064950|ref|ZP_04200248.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
           [Bacillus cereus AH603]
 gi|229136115|ref|ZP_04264868.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
           [Bacillus cereus BDRD-ST196]
 gi|229170007|ref|ZP_04297699.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
           [Bacillus cereus AH621]
 gi|228613432|gb|EEK70565.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
           [Bacillus cereus AH621]
 gi|228647274|gb|EEL03356.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
           [Bacillus cereus BDRD-ST196]
 gi|228716251|gb|EEL67963.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
           [Bacillus cereus AH603]
          Length = 133

 Score =  193 bits (492), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 81/121 (66%), Positives = 97/121 (80%)

Query: 58  MTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQM 117
           MTFGLACCA+EMM      YDL+RFG   R SPRQSDVMIV+GT+T KMA  +RR+YDQM
Sbjct: 1   MTFGLACCAIEMMGVGSSHYDLDRFGSFFRTSPRQSDVMIVSGTVTKKMAPIVRRLYDQM 60

Query: 118 PEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
           PEP++VI+MGSCA  GG Y  SY+VV+G D+IVPVD+Y+PGCPP   ALIYGI  L++KI
Sbjct: 61  PEPKWVIAMGSCATAGGPYVNSYAVVKGVDQIVPVDVYIPGCPPNPAALIYGINKLKEKI 120

Query: 178 R 178
           R
Sbjct: 121 R 121


>gi|256422834|ref|YP_003123487.1| NADH-quinone oxidoreductase, B subunit [Chitinophaga pinensis DSM
           2588]
 gi|256037742|gb|ACU61286.1| NADH-quinone oxidoreductase, B subunit [Chitinophaga pinensis DSM
           2588]
          Length = 212

 Score =  193 bits (491), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 69/151 (45%), Positives = 101/151 (66%), Gaps = 2/151 (1%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RAS 89
            E   +  ++T+V  L+ W R  S+    FGL+CC VEM  +   +YD+ RFG    R +
Sbjct: 22  EEAVSRSIMLTTVQDLLAWGRKNSMWPFHFGLSCCFVEMATSITSKYDVARFGAEVIRGT 81

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PR++DVM++AGT+  KM   ++R+++QM EPR+VISMGSCAN GG Y   YSVV+G D+ 
Sbjct: 82  PREADVMVIAGTVFIKMVPIIKRLHEQMMEPRWVISMGSCANSGGMY-DIYSVVQGVDKF 140

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           +PVD+YVPGCPP  +A + G++LL   + + 
Sbjct: 141 LPVDVYVPGCPPRPDAFMQGLVLLGNSVGKE 171


>gi|70607377|ref|YP_256247.1| NADH:ubiquinone oxidoreductase, B subunit [Sulfolobus
           acidocaldarius DSM 639]
 gi|68568025|gb|AAY80954.1| NADH:ubiquinone oxidoreductase, B subunit [Sulfolobus
           acidocaldarius DSM 639]
          Length = 171

 Score =  193 bits (491), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 63/157 (40%), Positives = 92/157 (58%)

Query: 22  VDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLER 81
           +  +   +S ++ +       +  L  W  + SL       +CC  E    +  R+D ER
Sbjct: 7   LTGNLEEVSKKVVNWLLNRKPIKSLKDWGTSFSLWPPHLTTSCCGTEFGAFAAARFDAER 66

Query: 82  FGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYS 141
           +G  P +S RQ++++++ GTLT KM  A + VYDQMPEP++VI+MG+CA  GG +  SY+
Sbjct: 67  YGVLPFSSARQTNLLVIEGTLTRKMGRAAKIVYDQMPEPKFVIAMGACALEGGIFWNSYN 126

Query: 142 VVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
            V   D  +PVDIY PGCP   EAL   +LLLQK+IR
Sbjct: 127 TVLPSDLGIPVDIYAPGCPTRPEALARAVLLLQKRIR 163


>gi|320161606|ref|YP_004174831.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit family protein
           [Anaerolinea thermophila UNI-1]
 gi|319995460|dbj|BAJ64231.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit family protein
           [Anaerolinea thermophila UNI-1]
          Length = 173

 Score =  193 bits (491), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 59/151 (39%), Positives = 92/151 (60%), Gaps = 3/151 (1%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTF---GLACCAVEMMQASMPRYDLERFGFAPR 87
           +E T +      +D++  WAR  S   + +       C +E++    PRYDLERFG    
Sbjct: 2   TEQTLRSPWQEVLDKVRLWARVNSPWAIHYNSGSCNGCDIEIVATLTPRYDLERFGVKLE 61

Query: 88  ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCD 147
            SPR +DV+I  G +T +    L R+Y QMPEP++V+++GSC   GG +H  Y++  G D
Sbjct: 62  GSPRHADVLICTGPVTRQSRDRLLRIYHQMPEPKFVVAVGSCGLSGGVFHGLYNIAGGID 121

Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
            ++PVD+++PGCPP  EA+IYG++ L + +R
Sbjct: 122 EVLPVDVFIPGCPPRPEAIIYGLVQLLEGLR 152


>gi|18313693|ref|NP_560360.1| NADH-ubiquinone oxidoreductase subunit [Pyrobaculum aerophilum str.
           IM2]
 gi|18161245|gb|AAL64542.1| NADH-ubiquinone oxidoreductase subunit [Pyrobaculum aerophilum str.
           IM2]
          Length = 190

 Score =  193 bits (491), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 62/138 (44%), Positives = 92/138 (66%), Gaps = 1/138 (0%)

Query: 41  TSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAG 100
             ++++  W    SL  +    +CC VE+   S P +D ER+G  P  + RQ++V+IV G
Sbjct: 13  AKLERVFKWGVRWSLWPVHLVTSCCGVEVAHTSAPGFDAERWGVLPFNTMRQTNVIIVEG 72

Query: 101 TLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCP 160
           T+T KMA  L++VY+QMPEP++V++MG+CA  GG +  SY VV+  D IVPVD+Y+ GCP
Sbjct: 73  TITRKMAKVLKQVYEQMPEPKFVLAMGACAVRGGLFWNSYHVVQ-VDTIVPVDVYIAGCP 131

Query: 161 PTAEALIYGILLLQKKIR 178
           PT EA+I   ++L  KI+
Sbjct: 132 PTPEAVIRAFIMLHNKIK 149


>gi|227827741|ref|YP_002829521.1| NADH-quinone oxidoreductase subunit beta [Sulfolobus islandicus
           M.14.25]
 gi|227830450|ref|YP_002832230.1| NADH-quinone oxidoreductase, B subunit [Sulfolobus islandicus
           L.S.2.15]
 gi|229585012|ref|YP_002843514.1| NADH-quinone oxidoreductase, B subunit [Sulfolobus islandicus
           M.16.27]
 gi|238619913|ref|YP_002914739.1| NADH-quinone oxidoreductase, B subunit [Sulfolobus islandicus
           M.16.4]
 gi|284997944|ref|YP_003419711.1| NADH-quinone oxidoreductase, B subunit [Sulfolobus islandicus
           L.D.8.5]
 gi|227456898|gb|ACP35585.1| NADH-quinone oxidoreductase, B subunit [Sulfolobus islandicus
           L.S.2.15]
 gi|227459537|gb|ACP38223.1| NADH-quinone oxidoreductase, B subunit [Sulfolobus islandicus
           M.14.25]
 gi|228020062|gb|ACP55469.1| NADH-quinone oxidoreductase, B subunit [Sulfolobus islandicus
           M.16.27]
 gi|238380983|gb|ACR42071.1| NADH-quinone oxidoreductase, B subunit [Sulfolobus islandicus
           M.16.4]
 gi|284445839|gb|ADB87341.1| NADH-quinone oxidoreductase, B subunit [Sulfolobus islandicus
           L.D.8.5]
 gi|323474809|gb|ADX85415.1| NADH-quinone oxidoreductase, B subunit [Sulfolobus islandicus
           REY15A]
 gi|323477516|gb|ADX82754.1| NADH-quinone oxidoreductase, B subunit [Sulfolobus islandicus
           HVE10/4]
          Length = 170

 Score =  193 bits (491), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 62/160 (38%), Positives = 94/160 (58%)

Query: 24  ADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFG 83
            + + ++ +          +  ++ W  + SL    F  +CC  E    +  R+D ER+G
Sbjct: 9   GNLNEVAKKAAQWLINRKPIKSIIDWGISFSLWPPHFTTSCCGTEFGAFAAARFDAERYG 68

Query: 84  FAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVV 143
             P +S RQS+++I+ GTL+ KM  A R VYDQMPEP++VI++G+C   GG +  SY+ V
Sbjct: 69  MLPFSSARQSNILILEGTLSRKMGRAARIVYDQMPEPKFVIALGACILEGGIFWNSYNTV 128

Query: 144 RGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
              D  +PVD+YVPGCP   EA+   +L+LQKKIR  G +
Sbjct: 129 LPSDLGIPVDLYVPGCPIRPEAVARAVLMLQKKIRTQGAL 168


>gi|229579262|ref|YP_002837660.1| NADH-quinone oxidoreductase, B subunit [Sulfolobus islandicus
           Y.G.57.14]
 gi|229581977|ref|YP_002840376.1| NADH-quinone oxidoreductase, B subunit [Sulfolobus islandicus
           Y.N.15.51]
 gi|228009976|gb|ACP45738.1| NADH-quinone oxidoreductase, B subunit [Sulfolobus islandicus
           Y.G.57.14]
 gi|228012693|gb|ACP48454.1| NADH-quinone oxidoreductase, B subunit [Sulfolobus islandicus
           Y.N.15.51]
          Length = 170

 Score =  193 bits (491), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 62/160 (38%), Positives = 94/160 (58%)

Query: 24  ADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFG 83
            + + ++ +          +  ++ W  + SL    F  +CC  E    +  R+D ER+G
Sbjct: 9   GNLNEVAKKAAQWLINRKPIKSIIDWGISFSLWPPHFTTSCCGTEFGAFAAARFDAERYG 68

Query: 84  FAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVV 143
             P +S RQS+++I+ GTL+ KM  A R VYDQMPEP++VI++G+C   GG +  SY+ V
Sbjct: 69  MLPFSSARQSNILILEGTLSRKMGRAARIVYDQMPEPKFVIALGACILEGGIFWNSYNTV 128

Query: 144 RGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
              D  +PVD+YVPGCP   EA+   +L+LQKKIR  G +
Sbjct: 129 LPSDLGIPVDLYVPGCPIRPEAVARAVLMLQKKIRTQGAL 168


>gi|117619274|ref|YP_856317.1| NADH dehydrogenase subunit B [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|238065068|sp|A0KJ66|NUOB_AERHH RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|117560681|gb|ABK37629.1| NADH-quinone oxidoreductase chain b [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 224

 Score =  193 bits (490), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 74/181 (40%), Positives = 107/181 (59%), Gaps = 3/181 (1%)

Query: 3   LTTVNQ-KIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFG 61
           LT ++    +        + V+   ++ +S     G L   +   V W R  SL    FG
Sbjct: 5   LTRIDPDAPVERYPQEQRQTVEDPLAQEASRGIMIGRLEEVLQDTVNWGRKNSLWPYNFG 64

Query: 62  LACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           ++CC VEM  A    +D+ RFG    RASPRQ+D M++AGT   KMA  ++R+Y+Q+ EP
Sbjct: 65  ISCCYVEMCTAFTSPHDVARFGAEVIRASPRQADFMVIAGTPFIKMAPVIQRLYEQLLEP 124

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           ++VISMG+CAN GG Y   YSVV+G D+ +PVD+Y+PGCPP  EA +  ++LLQ  I + 
Sbjct: 125 KWVISMGACANSGGMY-DIYSVVQGVDKFLPVDVYIPGCPPRPEAFLQALMLLQDSIGKE 183

Query: 181 G 181
            
Sbjct: 184 R 184


>gi|328906302|gb|EGG26077.1| NADH dehydrogenase subunit B [Propionibacterium sp. P08]
          Length = 185

 Score =  193 bits (490), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 72/147 (48%), Positives = 107/147 (72%), Gaps = 2/147 (1%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQ 92
              G ++TS++ +V W R  S   +T GLACCA+EM+    PR D  R+G    RASPRQ
Sbjct: 8   VPAGIVMTSMEAIVGWLRKTSFWPLTMGLACCAIEMISYGGPRADAARWGHEVFRASPRQ 67

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           +D+MIV+G ++ KMA  +R++YDQMPEP++VISMG+CA+ GG ++  Y+VV+GCD IVPV
Sbjct: 68  ADLMIVSGRVSQKMAPVVRQLYDQMPEPKWVISMGACASSGGIFNN-YAVVQGCDHIVPV 126

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179
           D+Y+PGCPP+ + LI  +  ++++I+ 
Sbjct: 127 DVYLPGCPPSPDMLIDAVFKIREQIQH 153


>gi|313836201|gb|EFS73915.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL037PA2]
 gi|314971365|gb|EFT15463.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL037PA3]
          Length = 188

 Score =  192 bits (489), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 72/147 (48%), Positives = 107/147 (72%), Gaps = 2/147 (1%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQ 92
              G ++TS++ +V W R  S   +T GLACCA+EM+    PR D  R+G    RASPRQ
Sbjct: 11  VPAGIVMTSMEAIVGWLRKTSFWPLTMGLACCAIEMISYGGPRADAARWGHEVFRASPRQ 70

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           +D+MIV+G ++ KMA  +R++YDQMPEP++VISMG+CA+ GG ++  Y+VV+GCD IVPV
Sbjct: 71  ADLMIVSGRVSQKMAPVVRQLYDQMPEPKWVISMGACASSGGIFNN-YAVVQGCDHIVPV 129

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179
           D+Y+PGCPP+ + LI  +  ++++I+ 
Sbjct: 130 DVYLPGCPPSPDMLIDAVFKIREQIQH 156


>gi|314927636|gb|EFS91467.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL044PA1]
          Length = 188

 Score =  192 bits (489), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 72/147 (48%), Positives = 107/147 (72%), Gaps = 2/147 (1%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQ 92
              G ++TS++ +V W R  S   +T GLACCA+EM+    PR D  R+G    RASPRQ
Sbjct: 11  VPAGIVMTSMEAIVGWLRKTSFWPLTMGLACCAIEMISYGGPRADAARWGHEVFRASPRQ 70

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           +D+MIV+G ++ KMA  +R++YDQMPEP++VISMG+CA+ GG ++  Y+VV+GCD IVPV
Sbjct: 71  ADLMIVSGRVSQKMAPVVRQLYDQMPEPKWVISMGACASSGGIFNN-YAVVQGCDHIVPV 129

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179
           D+Y+PGCPP+ + LI  +  ++++I+ 
Sbjct: 130 DVYLPGCPPSPDMLIDAVFKIREQIQH 156


>gi|282855273|ref|ZP_06264605.1| NADH dehydrogenase subunit B [Propionibacterium acnes J139]
 gi|282581861|gb|EFB87246.1| NADH dehydrogenase subunit B [Propionibacterium acnes J139]
          Length = 185

 Score =  192 bits (489), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 72/147 (48%), Positives = 107/147 (72%), Gaps = 2/147 (1%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQ 92
              G ++TS++ +V W R  S   +T GLACCA+EM+    PR D  R+G    RASPRQ
Sbjct: 8   VPAGIVMTSMEAIVGWLRKTSFWPLTMGLACCAIEMISYGGPRADAARWGHEVFRASPRQ 67

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           +D+MIV+G ++ KMA  +R++YDQMPEP++VISMG+CA+ GG ++  Y+VV+GCD IVPV
Sbjct: 68  ADLMIVSGRVSQKMAPVVRQLYDQMPEPKWVISMGACASSGGIFNN-YAVVQGCDHIVPV 126

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179
           D+Y+PGCPP+ + LI  +  ++++I+ 
Sbjct: 127 DVYLPGCPPSPDMLIDAVFKIREQIQH 153


>gi|50843385|ref|YP_056612.1| NADH dehydrogenase subunit B [Propionibacterium acnes KPA171202]
 gi|289425667|ref|ZP_06427439.1| NADH dehydrogenase subunit B [Propionibacterium acnes SK187]
 gi|289426988|ref|ZP_06428707.1| NADH dehydrogenase subunit B [Propionibacterium acnes J165]
 gi|295131459|ref|YP_003582122.1| NADH-ubiquinone oxidoreductase chain B [Propionibacterium acnes
           SK137]
 gi|81611154|sp|Q6A6F9|NUOB_PROAC RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|50840987|gb|AAT83654.1| NADH dehydrogenase I chain B [Propionibacterium acnes KPA171202]
 gi|289153968|gb|EFD02661.1| NADH dehydrogenase subunit B [Propionibacterium acnes SK187]
 gi|289159810|gb|EFD07995.1| NADH dehydrogenase subunit B [Propionibacterium acnes J165]
 gi|291376052|gb|ADD99906.1| NADH-ubiquinone oxidoreductase chain B [Propionibacterium acnes
           SK137]
 gi|332676328|gb|AEE73144.1| NADH-quinone oxidoreductase subunit B [Propionibacterium acnes 266]
          Length = 185

 Score =  192 bits (489), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 72/147 (48%), Positives = 107/147 (72%), Gaps = 2/147 (1%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQ 92
              G ++TS++ +V W R  S   +T GLACCA+EM+    PR D  R+G    RASPRQ
Sbjct: 8   VPAGIVMTSMEAIVGWLRKTSFWPLTMGLACCAIEMISYGGPRADAARWGHEVFRASPRQ 67

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           +D+MIV+G ++ KMA  +R++YDQMPEP++VISMG+CA+ GG ++  Y+VV+GCD IVPV
Sbjct: 68  ADLMIVSGRVSQKMAPVVRQLYDQMPEPKWVISMGACASSGGIFNN-YAVVQGCDHIVPV 126

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179
           D+Y+PGCPP+ + LI  +  ++++I+ 
Sbjct: 127 DVYLPGCPPSPDMLIDAVFKIREQIQH 153


>gi|314923993|gb|EFS87824.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL001PA1]
 gi|314965057|gb|EFT09156.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL082PA2]
 gi|314983077|gb|EFT27169.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL110PA3]
 gi|315090610|gb|EFT62586.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL110PA4]
 gi|315093903|gb|EFT65879.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL060PA1]
 gi|315104122|gb|EFT76098.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL050PA2]
 gi|327325785|gb|EGE67577.1| NADH dehydrogenase I, B subunit [Propionibacterium acnes HL103PA1]
          Length = 188

 Score =  192 bits (489), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 72/147 (48%), Positives = 107/147 (72%), Gaps = 2/147 (1%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQ 92
              G ++TS++ +V W R  S   +T GLACCA+EM+    PR D  R+G    RASPRQ
Sbjct: 11  VPAGIVMTSMEAIVGWLRKTSFWPLTMGLACCAIEMISYGGPRADAARWGHEVFRASPRQ 70

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           +D+MIV+G ++ KMA  +R++YDQMPEP++VISMG+CA+ GG ++  Y+VV+GCD IVPV
Sbjct: 71  ADLMIVSGRVSQKMAPVVRQLYDQMPEPKWVISMGACASSGGIFNN-YAVVQGCDHIVPV 129

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179
           D+Y+PGCPP+ + LI  +  ++++I+ 
Sbjct: 130 DVYLPGCPPSPDMLIDAVFKIREQIQH 156


>gi|297570897|ref|YP_003696671.1| NADH-quinone oxidoreductase subunit beta [Arcanobacterium
           haemolyticum DSM 20595]
 gi|296931244|gb|ADH92052.1| NADH-quinone oxidoreductase, B subunit [Arcanobacterium
           haemolyticum DSM 20595]
          Length = 185

 Score =  192 bits (489), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 71/152 (46%), Positives = 101/152 (66%), Gaps = 2/152 (1%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89
            E    G  +T+V+ L  WA+  S   +T GLACCA+EMM     R+D  R G    RAS
Sbjct: 4   EEKVPAGIGLTTVEALAGWAQQRSPWPVTMGLACCAIEMMSFGATRFDASRIGMEVFRAS 63

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PR +D+MIV+G +++KMA  +R +YDQMP+P++VISMG+CA+ GG ++  Y++V+G D I
Sbjct: 64  PRHADIMIVSGRVSHKMAPVVRNIYDQMPDPKWVISMGACASSGGVFNN-YAIVQGIDHI 122

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
           VPVDIY+PGCPP  E LI  +  L+  + +  
Sbjct: 123 VPVDIYLPGCPPRPEMLINAVFELRNNVMKNR 154


>gi|313763285|gb|EFS34649.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL013PA1]
 gi|313773331|gb|EFS39297.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL074PA1]
 gi|313793607|gb|EFS41647.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL110PA1]
 gi|313802882|gb|EFS44095.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL110PA2]
 gi|313806328|gb|EFS44844.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL087PA2]
 gi|313810766|gb|EFS48480.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL083PA1]
 gi|313813675|gb|EFS51389.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL025PA1]
 gi|313814975|gb|EFS52689.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL059PA1]
 gi|313819439|gb|EFS57153.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL046PA2]
 gi|313821245|gb|EFS58959.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL036PA1]
 gi|313822300|gb|EFS60014.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL036PA2]
 gi|313826142|gb|EFS63856.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL063PA1]
 gi|313829369|gb|EFS67083.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL063PA2]
 gi|313831077|gb|EFS68791.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL007PA1]
 gi|313833207|gb|EFS70921.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL056PA1]
 gi|313838150|gb|EFS75864.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL086PA1]
 gi|314916739|gb|EFS80570.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL005PA4]
 gi|314919135|gb|EFS82966.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL050PA1]
 gi|314921215|gb|EFS85046.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL050PA3]
 gi|314925991|gb|EFS89822.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL036PA3]
 gi|314930357|gb|EFS94188.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL067PA1]
 gi|314956140|gb|EFT00536.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL027PA1]
 gi|314959673|gb|EFT03775.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL002PA1]
 gi|314962247|gb|EFT06348.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL002PA2]
 gi|314963239|gb|EFT07339.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL082PA1]
 gi|314969782|gb|EFT13880.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL037PA1]
 gi|314973939|gb|EFT18035.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL053PA1]
 gi|314976867|gb|EFT20962.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL045PA1]
 gi|314979332|gb|EFT23426.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL072PA2]
 gi|314984989|gb|EFT29081.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL005PA1]
 gi|314986337|gb|EFT30429.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL005PA2]
 gi|314988567|gb|EFT32658.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL005PA3]
 gi|315079684|gb|EFT51672.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL053PA2]
 gi|315081012|gb|EFT52988.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL078PA1]
 gi|315083925|gb|EFT55901.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL027PA2]
 gi|315085062|gb|EFT57038.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL002PA3]
 gi|315089491|gb|EFT61467.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL072PA1]
 gi|315097690|gb|EFT69666.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL038PA1]
 gi|315098103|gb|EFT70079.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL059PA2]
 gi|315102679|gb|EFT74655.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL046PA1]
 gi|315107941|gb|EFT79917.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL030PA1]
 gi|315108821|gb|EFT80797.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL030PA2]
 gi|327325710|gb|EGE67507.1| NADH dehydrogenase I, B subunit [Propionibacterium acnes HL096PA3]
 gi|327330842|gb|EGE72587.1| NADH dehydrogenase I, B subunit [Propionibacterium acnes HL096PA2]
 gi|327442865|gb|EGE89519.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL043PA2]
 gi|327445257|gb|EGE91911.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL043PA1]
 gi|327447757|gb|EGE94411.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL013PA2]
 gi|327451632|gb|EGE98286.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL087PA3]
 gi|327452285|gb|EGE98939.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL083PA2]
 gi|327452502|gb|EGE99156.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL092PA1]
 gi|328752118|gb|EGF65734.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL025PA2]
 gi|328755062|gb|EGF68678.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL020PA1]
 gi|328757010|gb|EGF70626.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL087PA1]
 gi|328761546|gb|EGF75064.1| NADH dehydrogenase I, B subunit [Propionibacterium acnes HL099PA1]
          Length = 188

 Score =  192 bits (488), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 72/147 (48%), Positives = 107/147 (72%), Gaps = 2/147 (1%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQ 92
              G ++TS++ +V W R  S   +T GLACCA+EM+    PR D  R+G    RASPRQ
Sbjct: 11  VPAGIVMTSMEAIVGWLRKTSFWPLTMGLACCAIEMISYGGPRADAARWGHEVFRASPRQ 70

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           +D+MIV+G ++ KMA  +R++YDQMPEP++VISMG+CA+ GG ++  Y+VV+GCD IVPV
Sbjct: 71  ADLMIVSGRVSQKMAPVVRQLYDQMPEPKWVISMGACASSGGIFNN-YAVVQGCDHIVPV 129

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179
           D+Y+PGCPP+ + LI  +  ++++I+ 
Sbjct: 130 DVYLPGCPPSPDMLIDAVFKIREQIQH 156


>gi|301058551|ref|ZP_07199556.1| NADH dehydrogenase I subunit B [delta proteobacterium NaphS2]
 gi|300447283|gb|EFK11043.1| NADH dehydrogenase I subunit B [delta proteobacterium NaphS2]
          Length = 210

 Score =  192 bits (488), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 73/163 (44%), Positives = 104/163 (63%), Gaps = 2/163 (1%)

Query: 16  SCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMP 75
           S   +           +      ++T +  ++ W+R  SL    FGL+CC VEMM A   
Sbjct: 5   SNRPDASPRPGDGTLEQAVKSSVILTRLQDMLAWSRKHSLWPFGFGLSCCFVEMMTAITS 64

Query: 76  RYDLERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGG 134
           RYD+ RFG    RASPR++D++I+AGT+  KM   ++R+Y+QM  PR+VISMGSCAN GG
Sbjct: 65  RYDISRFGAEVVRASPREADMIIIAGTMFVKMVPVVKRLYEQMMAPRWVISMGSCANSGG 124

Query: 135 YYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
            +   YSVV+G D+ +PVD+YVPGCPP+  A + G+ LLQ+K+
Sbjct: 125 MF-DIYSVVQGVDQFLPVDVYVPGCPPSPMAFMEGLTLLQEKV 166


>gi|327403945|ref|YP_004344783.1| NADH dehydrogenase subunit B [Fluviicola taffensis DSM 16823]
 gi|327319453|gb|AEA43945.1| NADH dehydrogenase subunit B [Fluviicola taffensis DSM 16823]
          Length = 182

 Score =  192 bits (488), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 63/149 (42%), Positives = 103/149 (69%), Gaps = 2/149 (1%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA-S 89
             I  +GF +T +D+++  AR  S+  + F  +CC +E M      YD+ RFG    + S
Sbjct: 11  ETINGEGFQLTLLDKVIGAARANSVWPLPFATSCCGIEYMGTMGSNYDVARFGMERMSFS 70

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQ+D++IVAGT++ K+A  L++VY+QM EP++V+S+G+CA+ GG +  +YSV++G DR+
Sbjct: 71  PRQADLLIVAGTISKKLAPILKQVYEQMAEPKWVLSVGACASSGGIF-DTYSVLQGIDRV 129

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           +PVD+YVPGCPP  E +I G + + + ++
Sbjct: 130 IPVDVYVPGCPPRPEQIIEGCMNIHRLVK 158


>gi|327333123|gb|EGE74850.1| NADH dehydrogenase I, B subunit [Propionibacterium acnes HL097PA1]
          Length = 188

 Score =  192 bits (488), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 72/147 (48%), Positives = 107/147 (72%), Gaps = 2/147 (1%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQ 92
              G ++TS++ +V W R  S   +T GLACCA+EM+    PR D  R+G    RASPRQ
Sbjct: 11  VPAGIVMTSMEAIVGWLRKTSFWPLTMGLACCAIEMISYGGPRADAARWGHEVFRASPRQ 70

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           +D+MIV+G ++ KMA  +R++YDQMPEP++VISMG+CA+ GG ++  Y+VV+GCD IVPV
Sbjct: 71  ADLMIVSGRVSQKMAPVVRQLYDQMPEPKWVISMGACASSGGIFNN-YAVVQGCDHIVPV 129

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179
           D+Y+PGCPP+ + LI  +  ++++I+ 
Sbjct: 130 DVYLPGCPPSPDMLIDAVFKIREQIQH 156


>gi|325954435|ref|YP_004238095.1| NAD(P)H-quinone oxidoreductase subunit K [Weeksella virosa DSM
           16922]
 gi|323437053|gb|ADX67517.1| NAD(P)H-quinone oxidoreductase subunit K [Weeksella virosa DSM
           16922]
          Length = 191

 Score =  192 bits (488), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 64/170 (37%), Positives = 103/170 (60%), Gaps = 2/170 (1%)

Query: 10  IISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEM 69
           +I  +   +          +      +GF+   + ++V  AR  S+  + F  +CC +E 
Sbjct: 1   MIHNKRPVTHNTNVKVIDELPEGYQGEGFMAMQLSKVVGLARKNSIWPLPFATSCCGIEF 60

Query: 70  MQASMPRYDLERFGFAPRA-SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGS 128
           M     +YDL RFG    A +PRQ D+++V GT++ KMA  L++VY QM EPR+VI++G+
Sbjct: 61  MATMGSKYDLARFGSERLAFTPRQCDLLMVMGTISKKMAPVLKQVYIQMAEPRWVIAVGA 120

Query: 129 CANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           CA+ GG +  +YSV++G D ++PVD+YVPGCPP  E +I G++ +Q+ I 
Sbjct: 121 CASSGGIF-DTYSVLQGIDEVIPVDVYVPGCPPRPEGIIEGVMRIQELIE 169


>gi|290988470|ref|XP_002676938.1| predicted protein [Naegleria gruberi]
 gi|284090543|gb|EFC44194.1| predicted protein [Naegleria gruberi]
          Length = 131

 Score =  192 bits (487), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 89/124 (71%), Positives = 100/124 (80%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           FL   +  L  WAR GS+  +TFGLACCAVEMM AS  RYDLER G   R +PRQ+D MI
Sbjct: 6   FLKAPLHDLFAWARVGSMWPVTFGLACCAVEMMHASASRYDLERKGIFFRPTPRQADAMI 65

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           +AGTLTNKMA ALR+V+DQM EPRY ISMGSCANGGGYYH+SY VVRG D+IVPVD+YVP
Sbjct: 66  IAGTLTNKMAPALRKVWDQMAEPRYSISMGSCANGGGYYHFSYHVVRGADQIVPVDVYVP 125

Query: 158 GCPP 161
           GCPP
Sbjct: 126 GCPP 129


>gi|91200364|emb|CAJ73410.1| strongly similar to NADH dehydrogenase I chain B [Candidatus
           Kuenenia stuttgartiensis]
          Length = 212

 Score =  192 bits (487), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 70/152 (46%), Positives = 101/152 (66%), Gaps = 2/152 (1%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RAS 89
            E   K  ++ ++  L+ W R  SL    FGL+CC VEM  +   +YD+ RFG    R +
Sbjct: 22  EEAVQKTVVLCNLQNLIAWGRKNSLWPFNFGLSCCYVEMATSLTSKYDIARFGAEVIRGT 81

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PR++DVMI AGT+  KMA  ++R+Y+QM EPR++ISMGSC+N GG Y   YSVV+G D+ 
Sbjct: 82  PREADVMITAGTIFIKMAPIIKRLYEQMMEPRWIISMGSCSNSGGMY-DIYSVVQGVDKF 140

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
           +PVD+YVPGCPP  +A + G+L+L+  + +  
Sbjct: 141 MPVDVYVPGCPPRPDAFMEGLLMLRDSVGKEK 172


>gi|124027080|ref|YP_001012400.1| NAD(P)H-quinone oxidoreductase chain K [Hyperthermus butylicus DSM
           5456]
 gi|123977774|gb|ABM80055.1| NAD(P)H-quinone oxidoreductase chain K [Hyperthermus butylicus DSM
           5456]
          Length = 209

 Score =  192 bits (487), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 62/139 (44%), Positives = 91/139 (65%), Gaps = 1/139 (0%)

Query: 41  TSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAG 100
             +  L+ W  + SL  +    +CC  E      P+YD ER G  P   PR ++V++V G
Sbjct: 31  KPIKSLLDWGISFSLWPVHLTTSCCGAEFAAVYDPKYDSERLGSLPFTHPRNTNVLLVEG 90

Query: 101 TLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCP 160
           TLT KMA A R V++QMP P++VI+MG+CA  GG ++ SY++VR  ++I+PVD YVPGCP
Sbjct: 91  TLTRKMARAARLVWEQMPWPKFVIAMGACAITGGIFYNSYNIVR-VNQILPVDYYVPGCP 149

Query: 161 PTAEALIYGILLLQKKIRR 179
           PT EA+   ++ LQ+K+R+
Sbjct: 150 PTPEAVANALIKLQEKVRK 168


>gi|83814127|ref|YP_444539.1| NADH-quinone oxidoreductase chain b [Salinibacter ruber DSM 13855]
 gi|294506285|ref|YP_003570343.1| NADH-quinone oxidoreductase chain B [Salinibacter ruber M8]
 gi|123529616|sp|Q2S5J2|NUOB_SALRD RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|83755521|gb|ABC43634.1| NADH-quinone oxidoreductase chain b [Salinibacter ruber DSM 13855]
 gi|294342613|emb|CBH23391.1| NADH-quinone oxidoreductase chain B [Salinibacter ruber M8]
          Length = 213

 Score =  191 bits (486), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 77/155 (49%), Positives = 108/155 (69%), Gaps = 2/155 (1%)

Query: 30  SSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRA 88
           SS    +GF  T VD  + WAR+ SLM M  GLACCA+EMM  + P+YD  RFG    R 
Sbjct: 4   SSGTNGQGFFTTRVDTFLNWARSNSLMPMPMGLACCAIEMMGFAGPKYDSARFGSEAMRF 63

Query: 89  SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 148
           SPRQ+D+MIVAG  + KM+ A+RRV+DQM +P++ I+MG+CA+ GG  H  Y VV+G D 
Sbjct: 64  SPRQADLMIVAGWCSYKMSHAIRRVWDQMGDPKWCIAMGACASTGGM-HRCYGVVQGVDN 122

Query: 149 IVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
            +PVD+Y+ GCPP  E++++ ++ +Q+KIR   +V
Sbjct: 123 FLPVDVYISGCPPRPESVLHALMDIQEKIRNEYSV 157


>gi|300114494|ref|YP_003761069.1| NADH-quinone oxidoreductase subunit B [Nitrosococcus watsonii
           C-113]
 gi|299540431|gb|ADJ28748.1| NADH-quinone oxidoreductase, B subunit [Nitrosococcus watsonii
           C-113]
          Length = 212

 Score =  191 bits (486), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 79/174 (45%), Positives = 113/174 (64%), Gaps = 6/174 (3%)

Query: 9   KIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVE 68
           ++   Q++ S+E+    F     +   +  L   +  LV W R  SL    FGL+CC VE
Sbjct: 4   RLSKPQTAASVEQSKGSF----EDAIRRNLLFARLQDLVAWGRKNSLWPYNFGLSCCYVE 59

Query: 69  MMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMG 127
           M  +   +YD+ RFG    RA+PR++D+M+++GT+  KMA  ++R+Y+QM EPR+VISMG
Sbjct: 60  MATSFTSKYDIARFGAEVIRATPREADLMVISGTVFIKMAPVIKRLYEQMMEPRWVISMG 119

Query: 128 SCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
           SCAN GG Y   YSVV+G D+ +PVD+YVPGCPP  +AL+ G+LLLQ+ I R  
Sbjct: 120 SCANSGGMY-DIYSVVQGVDKFLPVDVYVPGCPPRPDALLEGLLLLQEAIGREQ 172


>gi|295798101|emb|CAX68920.1| NADH:quinone oxidoreductase, subunit PSST/NdhK/NuoB [uncultured
           bacterium]
          Length = 155

 Score =  191 bits (485), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 65/146 (44%), Positives = 99/146 (67%), Gaps = 2/146 (1%)

Query: 37  GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APRASPRQSDV 95
            ++ + V+ L+ WAR  SL    F  ACC +E M  S   +DL+RFG   PR SPRQ+DV
Sbjct: 8   NYITSRVNDLLGWARKYSLFQYPFVTACCGMEYMSVSCAHHDLDRFGAAFPRFSPRQADV 67

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
           ++V GT+++K+A  LR VYDQM +P++V++ G C   GG ++ +Y+ V+G D I+PVD+Y
Sbjct: 68  LLVVGTISHKLAPVLRNVYDQMCDPKWVVAFGVCTCTGG-FYDNYATVQGIDTILPVDVY 126

Query: 156 VPGCPPTAEALIYGILLLQKKIRRVG 181
           +PGCPP  E ++ G++ LQ+KI+   
Sbjct: 127 IPGCPPRPENVLDGLMRLQEKIQNQK 152


>gi|227874585|ref|ZP_03992748.1| NADH dehydrogenase (quinone) [Mobiluncus mulieris ATCC 35243]
 gi|269977615|ref|ZP_06184582.1| NADH-quinone oxidoreductase subunit b [Mobiluncus mulieris 28-1]
 gi|306817869|ref|ZP_07451608.1| NADH-quinone oxidoreductase subunit B [Mobiluncus mulieris ATCC
           35239]
 gi|307701323|ref|ZP_07638344.1| NADH dehydrogenase subunit B [Mobiluncus mulieris FB024-16]
 gi|227844794|gb|EEJ54940.1| NADH dehydrogenase (quinone) [Mobiluncus mulieris ATCC 35243]
 gi|269934218|gb|EEZ90785.1| NADH-quinone oxidoreductase subunit b [Mobiluncus mulieris 28-1]
 gi|304649348|gb|EFM46634.1| NADH-quinone oxidoreductase subunit B [Mobiluncus mulieris ATCC
           35239]
 gi|307613484|gb|EFN92732.1| NADH dehydrogenase subunit B [Mobiluncus mulieris FB024-16]
          Length = 184

 Score =  191 bits (485), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 74/151 (49%), Positives = 111/151 (73%), Gaps = 4/151 (2%)

Query: 30  SSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRA 88
             EI+ KG     +D +V +AR+ S+  +T GLACCA+EMM  + PR+D+ RFG    RA
Sbjct: 5   PPEISEKG--GKPLDTVVDFARSLSIWPVTMGLACCAIEMMATAAPRFDIARFGSEVFRA 62

Query: 89  SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 148
           SPR +DVM+V+G +++KMA+ +R VYD+M +P++VISMG+CA+ GG ++  Y++V+GCD 
Sbjct: 63  SPRHADVMLVSGRVSHKMATIMRNVYDEMADPKWVISMGACASSGGIFNN-YAIVQGCDH 121

Query: 149 IVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           +VPVDIY+PGCPP  E L+  +L L+  I++
Sbjct: 122 VVPVDIYLPGCPPRPEMLLGALLALRDHIKK 152


>gi|307696866|gb|ADN85879.1| NADH-ubiquinone oxidoreductase subunit 10 [Nyctotherus ovalis]
          Length = 155

 Score =  190 bits (484), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 73/128 (57%), Positives = 100/128 (78%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           FL T    L++WAR G++  +TFGLACCA+EMM  +  RYD++RFGF  R SPR  D +I
Sbjct: 4   FLTTRSTALISWARGGAMWPLTFGLACCAIEMMHMTASRYDMDRFGFLFRPSPRHVDFLI 63

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           ++GT+T KM+  ++R+Y Q+ +P++VISMGSCAN GG Y+YSY+VVRG D I+PVD+Y+P
Sbjct: 64  ISGTVTYKMSYTVKRLYSQLLDPKWVISMGSCANTGGLYYYSYAVVRGVDNIIPVDVYIP 123

Query: 158 GCPPTAEA 165
           GCPP AE+
Sbjct: 124 GCPPHAES 131


>gi|170289764|ref|YP_001736580.1| F420H2 dehydrogenase subunit [Candidatus Korarchaeum cryptofilum
           OPF8]
 gi|170173844|gb|ACB06897.1| F420H2 dehydrogenase subunit [Candidatus Korarchaeum cryptofilum
           OPF8]
          Length = 174

 Score =  190 bits (484), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 65/161 (40%), Positives = 95/161 (59%), Gaps = 1/161 (0%)

Query: 24  ADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFG 83
            +  R + +          +  +  W    SL  + F  ACC  E   ++ P+YD ER G
Sbjct: 12  GNLERSARKAAAWLVNKRPIRDIRDWGIAFSLWPVHFTTACCGAEFAASAAPKYDAERLG 71

Query: 84  FAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVV 143
           F P    RQ +V+ + GTL+ KMA A   VY+QMPEP++VI MG+CA  GG +  SY++V
Sbjct: 72  FLPFIGIRQCNVLFIEGTLSKKMAEAAIWVYEQMPEPKFVIGMGACAIDGGIFWNSYNIV 131

Query: 144 RGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           R  D I+PV++++PGCPP  EA+   I++LQ+KIR+   VK
Sbjct: 132 RPMD-ILPVNVFIPGCPPRPEAVAQAIIMLQRKIRKGELVK 171


>gi|312183553|gb|ADQ42346.1| NADH:ubiquinone oxidoreductase B [Methanosaeta harundinacea]
          Length = 190

 Score =  190 bits (484), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 57/161 (35%), Positives = 100/161 (62%)

Query: 24  ADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFG 83
            D    ++E  H+   +  +  ++ W R  SL ++   + CC VEM+    P YD +RFG
Sbjct: 28  TDVWFTTTEKIHEIIDMGPIKNVLNWGRKNSLWFLMQPMGCCGVEMLVFGCPHYDCDRFG 87

Query: 84  FAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVV 143
             PRA+PRQ DVMI++G +T K   A++ +++++PEP++V+++G CA  GG ++ SY+++
Sbjct: 88  IFPRATPRQVDVMIISGYITRKYLPAIKNLWEEIPEPKWVMAIGECAISGGPFYDSYNII 147

Query: 144 RGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
               +  P+D+++PGCPP  E  I G   LQ+KI++  + +
Sbjct: 148 NDTSKFFPIDVFIPGCPPRPEKFIEGFRGLQEKIKQREDKR 188


>gi|162448793|ref|YP_001611160.1| NADH dehydrogenase (ubiquinone) [Sorangium cellulosum 'So ce 56']
 gi|238065021|sp|A9GUX6|NUOB1_SORC5 RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName:
           Full=NADH dehydrogenase I subunit B 1; AltName:
           Full=NDH-1 subunit B 1
 gi|161159375|emb|CAN90680.1| NADH dehydrogenase (ubiquinone) [Sorangium cellulosum 'So ce 56']
          Length = 194

 Score =  190 bits (484), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 69/149 (46%), Positives = 104/149 (69%), Gaps = 2/149 (1%)

Query: 32  EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASP 90
           E +  GF  T VD L+ WA+  SL    F  ACC +E M  + PR+D+ RFG   PR SP
Sbjct: 15  EGSEHGFATTRVDALLNWAKKYSLFQYPFVTACCGMEYMAMASPRFDMARFGAEVPRFSP 74

Query: 91  RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150
           RQ+D++ V GT++ + A AL+R+Y+QM +P++V++ G+CA+ GG ++ +Y+ V G D+++
Sbjct: 75  RQADLLWVVGTISQRQAPALKRIYEQMADPKWVLAFGTCASCGG-FYDNYTTVAGIDKVI 133

Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           P D+YVPGCPP  EA++ G++LLQ KI R
Sbjct: 134 PCDVYVPGCPPRPEAVLDGLMLLQDKIAR 162


>gi|298530619|ref|ZP_07018021.1| NADH-quinone oxidoreductase, B subunit [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298509993|gb|EFI33897.1| NADH-quinone oxidoreductase, B subunit [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 182

 Score =  190 bits (483), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 79/168 (47%), Positives = 104/168 (61%), Gaps = 8/168 (4%)

Query: 13  GQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQA 72
            Q + +L    AD S     I H       V +++   R  SL  MTFGLACCA+EMM  
Sbjct: 2   AQENQTLTHAYADTSYDEPIIDH-----APVQKILNICRAMSLWPMTFGLACCAIEMMGF 56

Query: 73  SMPRYDLERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCAN 131
            M R+D  RFG    R SPRQSD+MIVAGT+  K++  +  +Y+QMP P++VI+MG+CA 
Sbjct: 57  GMARFDSARFGAEVFRPSPRQSDLMIVAGTVNKKLSPLVTMLYEQMPSPKWVIAMGNCAI 116

Query: 132 GGGYY--HYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
            GG +     Y +V G DRI+PVD+YVPGCPP  E L+ G+  +QKKI
Sbjct: 117 SGGPFVYKNQYGIVEGVDRIIPVDVYVPGCPPRPEGLLEGLFQVQKKI 164


>gi|332702769|ref|ZP_08422857.1| NAD(P)H-quinone oxidoreductase subunit K [Desulfovibrio africanus
           str. Walvis Bay]
 gi|332552918|gb|EGJ49962.1| NAD(P)H-quinone oxidoreductase subunit K [Desulfovibrio africanus
           str. Walvis Bay]
          Length = 179

 Score =  190 bits (483), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 76/150 (50%), Positives = 103/150 (68%), Gaps = 3/150 (2%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89
           ++I      +    Q +   R  SL  MTFGLACCA+EMM  +MPR+D  RFG    R S
Sbjct: 12  ADIEPPLVQLPLAKQFLDVCRAMSLWPMTFGLACCAIEMMAMTMPRFDASRFGAEVFRPS 71

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY--YHYSYSVVRGCD 147
           PRQSD+M+VAGT++NKMA A+ R+Y+QMP P+YVI++G+CA  GG   +   Y +V G D
Sbjct: 72  PRQSDLMLVAGTVSNKMAQAVVRLYEQMPAPKYVIAIGNCAISGGPFLFKGQYGIVEGID 131

Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
           +++PVD+YVPGCPP  EA + G+  LQ+KI
Sbjct: 132 KLIPVDVYVPGCPPRPEAFLEGLFKLQEKI 161


>gi|239907416|ref|YP_002954157.1| NADH-quinone oxidoreductase chain B [Desulfovibrio magneticus RS-1]
 gi|239797282|dbj|BAH76271.1| NADH-quinone oxidoreductase chain B [Desulfovibrio magneticus RS-1]
          Length = 176

 Score =  190 bits (483), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 73/162 (45%), Positives = 107/162 (66%), Gaps = 3/162 (1%)

Query: 19  LEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78
           +   +   +   + +        +V +LV   R  S+  MTFGLACCA+EMM   M R+D
Sbjct: 1   MAPQNPSLAPAVNTVDPALIAQPAVQKLVDVCRAMSIWPMTFGLACCAIEMMAVGMARFD 60

Query: 79  LERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137
           + R+G    R SPRQSD+MIVAGT+  KMA A+ R+Y+QMP PRYV+++G+CA  GG ++
Sbjct: 61  IARYGAEVFRPSPRQSDLMIVAGTVNKKMAPAVVRLYEQMPAPRYVMALGNCAISGGPFN 120

Query: 138 --YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
               Y+V++G D ++PVD+YVPGCPP  EAL+ G+  +Q+K+
Sbjct: 121 IENQYNVIQGVDTLIPVDVYVPGCPPRPEALLEGLFAIQEKM 162


>gi|330508771|ref|YP_004385199.1| F420H2 dehydrogenase subunit B [Methanosaeta concilii GP-6]
 gi|328929579|gb|AEB69381.1| F420H2 dehydrogenase, subunit B [Methanosaeta concilii GP-6]
          Length = 190

 Score =  190 bits (482), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 54/161 (33%), Positives = 96/161 (59%)

Query: 24  ADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFG 83
            +    ++E  H+   +  +  +  W R  S+ ++   + CC VEM       YD +RFG
Sbjct: 28  TEVWFTTTEKIHEIIQMGPIKNIFNWGRKNSVYFLMQPMGCCGVEMFVFGAAPYDSDRFG 87

Query: 84  FAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVV 143
             PR +PRQ+DVMI++G LT K     + +++ MPEP++ I++G CA  GG ++ SY+++
Sbjct: 88  CIPRNTPRQTDVMIISGYLTRKYLPVFKNLWENMPEPKWCIAIGECAISGGPFYDSYNII 147

Query: 144 RGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           +      P+D+Y+PGCPP  E  + G++ LQ+KI++  +++
Sbjct: 148 QNTGDYFPIDVYIPGCPPRPEQFLEGLMNLQEKIKQRKDLR 188


>gi|327400429|ref|YP_004341268.1| NADH-quinone oxidoreductase subunit B [Archaeoglobus veneficus
           SNP6]
 gi|327315937|gb|AEA46553.1| NADH-quinone oxidoreductase, B subunit [Archaeoglobus veneficus
           SNP6]
          Length = 362

 Score =  190 bits (482), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 61/138 (44%), Positives = 81/138 (58%), Gaps = 1/138 (0%)

Query: 42  SVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGT 101
            +  +  W    SL  +    ACC VE+       YD ER+G       RQ++++IV G 
Sbjct: 17  PLAPIKRWGAKWSLWAVHLVTACCGVELAHTYASGYDAERWGSLNFGMMRQTNLIIVEGA 76

Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP 161
           ++ KMA ALR  ++QMPEP++VI MG+C   GG +  SY + R    IVPVD Y+PGCPP
Sbjct: 77  ISKKMARALRITWEQMPEPKFVIVMGACGIEGGLFWNSYHIARP-SEIVPVDYYIPGCPP 135

Query: 162 TAEALIYGILLLQKKIRR 179
           T EALI  I  LQKKI +
Sbjct: 136 TPEALIRAIRALQKKIEK 153


>gi|218886689|ref|YP_002436010.1| NADH-quinone oxidoreductase subunit beta [Desulfovibrio vulgaris
           str. 'Miyazaki F']
 gi|238065123|sp|B8DS03|NUOB_DESVM RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|218757643|gb|ACL08542.1| NADH-quinone oxidoreductase, B subunit [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 187

 Score =  189 bits (480), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 78/141 (55%), Positives = 101/141 (71%), Gaps = 3/141 (2%)

Query: 40  VTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQSDVMIV 98
           V  V +++   R  SL  MTFGLACCA+EMM   M R+D+ RFG    R SPRQSD+MIV
Sbjct: 27  VAPVQKILDVCRAMSLWPMTFGLACCAIEMMAVGMARFDISRFGAEVFRPSPRQSDLMIV 86

Query: 99  AGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH--YSYSVVRGCDRIVPVDIYV 156
           AGT+T KMA AL R+Y+QMP PRYV+++G+CA  GG ++    Y++V G D +VPVD+YV
Sbjct: 87  AGTVTRKMAPALVRLYEQMPAPRYVMALGNCAISGGPFNFEGQYAIVEGVDNLVPVDVYV 146

Query: 157 PGCPPTAEALIYGILLLQKKI 177
           PGCPP  EAL+ G+  +Q KI
Sbjct: 147 PGCPPRPEALLEGLFQIQHKI 167


>gi|327311105|ref|YP_004338002.1| NADH-quinone oxidoreductase subunit B [Thermoproteus uzoniensis
           768-20]
 gi|326947584|gb|AEA12690.1| NADH-quinone oxidoreductase subunit B [Thermoproteus uzoniensis
           768-20]
          Length = 202

 Score =  189 bits (480), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 62/137 (45%), Positives = 90/137 (65%), Gaps = 1/137 (0%)

Query: 41  TSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAG 100
             +D+++ W    S+  +    +CC VE+   S P +D ER+G  P  + RQ++V++V G
Sbjct: 15  AKLDRIIRWGIKWSMWPVHLVTSCCGVEVAHTSAPVFDAERWGVLPFNTMRQTNVILVEG 74

Query: 101 TLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCP 160
           T+T KMA  L+ VY+QMPEP++VI+MG+CA  GG +  SY VV+  D IVPVD Y+PGCP
Sbjct: 75  TITRKMAKVLKWVYEQMPEPKFVIAMGACAVRGGLFWNSYHVVQ-VDTIVPVDAYIPGCP 133

Query: 161 PTAEALIYGILLLQKKI 177
           PT EA+I    ++  KI
Sbjct: 134 PTPEAVIRAFFMVGNKI 150


>gi|108758077|ref|YP_630950.1| NADH dehydrogenase subunit B [Myxococcus xanthus DK 1622]
 gi|123247854|sp|Q1D8S3|NUOB_MYXXD RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|108461957|gb|ABF87142.1| NADH dehydrogenase I, B subunit [Myxococcus xanthus DK 1622]
          Length = 187

 Score =  188 bits (479), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 70/159 (44%), Positives = 107/159 (67%), Gaps = 4/159 (2%)

Query: 22  VDADFSRISSEITHK--GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDL 79
            DAD + I +    +  G+L + V + + WAR  SL    +  ACC +E M  +  R+D+
Sbjct: 2   ADADLANIVTTRRDESMGWLQSIVSKGLGWARKYSLFTYPYATACCGMEYMSVAASRHDI 61

Query: 80  ERFGF-APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY 138
            RFG   PR SPRQ+D+++V GT+  K A  L+RVY+QM EP++V++ G CA+ GG ++ 
Sbjct: 62  SRFGAEFPRFSPRQADLLMVVGTINLKQAPILKRVYEQMAEPKWVVAFGVCASSGG-FYD 120

Query: 139 SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
           +Y+V++G DRI+PVD+Y+PGCPP  E ++ G++LLQ KI
Sbjct: 121 NYAVLQGIDRIIPVDVYIPGCPPRPEQVLDGLMLLQDKI 159


>gi|292492188|ref|YP_003527627.1| NADH-quinone oxidoreductase subunit beta [Nitrosococcus halophilus
           Nc4]
 gi|291580783|gb|ADE15240.1| NADH-quinone oxidoreductase, B subunit [Nitrosococcus halophilus
           Nc4]
          Length = 212

 Score =  188 bits (479), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 76/173 (43%), Positives = 112/173 (64%), Gaps = 6/173 (3%)

Query: 10  IISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEM 69
           +   +++ S+E+    F     +   +  L   +  L+ W R  S+    FGL+CC VEM
Sbjct: 5   LSKPKTAASIEQSKGSF----EDAIRRNLLFARLQDLIAWGRKNSIWPFNFGLSCCYVEM 60

Query: 70  MQASMPRYDLERFGF-APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGS 128
             +   +YDL RFG    RA+PR++D+M+++GT+  KMA  ++R+Y+QM EPR+VISMGS
Sbjct: 61  ATSFTSKYDLGRFGSEIIRATPREADLMVISGTVFIKMAPVIKRLYEQMMEPRWVISMGS 120

Query: 129 CANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
           CAN GG Y   YSVV+G D+ +PVD+YVPGCPP  +AL+ G+LLLQ+ I +  
Sbjct: 121 CANSGGMY-DIYSVVQGVDKFLPVDVYVPGCPPRPDALLEGLLLLQEAIGKEQ 172


>gi|315427038|dbj|BAJ48655.1| NADH dehydrogenase I subunit B [Candidatus Caldiarchaeum
           subterraneum]
          Length = 168

 Score =  188 bits (478), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 73/134 (54%), Positives = 91/134 (67%), Gaps = 2/134 (1%)

Query: 46  LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTN 104
           L+ W R  SL       ACC+VE      PRYD ERFG+ P   S RQSDV++V GT+T+
Sbjct: 29  LLNWGRMASLFPAHITTACCSVEFAATHSPRYDPERFGWLPATGSLRQSDVLVVEGTVTS 88

Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGCDRIVPVDIYVPGCPPTA 163
           KMA  LR VYDQMPEP++VI+MG+CA  GG Y   SY+V++G D I+PVD+YVPGCPP  
Sbjct: 89  KMAQRLRLVYDQMPEPKWVIAMGACAISGGLYAKDSYNVIQGIDDILPVDVYVPGCPPNP 148

Query: 164 EALIYGILLLQKKI 177
                 ILLL++KI
Sbjct: 149 STFFQAILLLREKI 162


>gi|153004158|ref|YP_001378483.1| NADH dehydrogenase subunit B [Anaeromyxobacter sp. Fw109-5]
 gi|238065026|sp|A7H9V3|NUOB2_ANADF RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName:
           Full=NADH dehydrogenase I subunit B 2; AltName:
           Full=NDH-1 subunit B 2
 gi|152027731|gb|ABS25499.1| NADH-quinone oxidoreductase, B subunit [Anaeromyxobacter sp.
           Fw109-5]
          Length = 183

 Score =  188 bits (478), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 73/144 (50%), Positives = 102/144 (70%), Gaps = 2/144 (1%)

Query: 36  KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APRASPRQSD 94
           +GFL   V + + WAR  SL    F  ACC +E M  +  RYDL+RFG   PR SPRQ+D
Sbjct: 19  QGFLQGLVSKGLGWARKYSLFQYPFVTACCGMEFMTVASARYDLDRFGAALPRFSPRQAD 78

Query: 95  VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154
           ++IV GT+  K A  LRRVY+Q+ EP++V++ G CA+ GG ++ +Y+ V+G DRIVPVD+
Sbjct: 79  LLIVVGTVNCKQAPILRRVYEQIAEPKWVVAFGVCASSGG-FYDNYATVQGIDRIVPVDV 137

Query: 155 YVPGCPPTAEALIYGILLLQKKIR 178
           Y+PGCPP  E ++ GI+LLQ+KI+
Sbjct: 138 YIPGCPPRPEQVLDGIMLLQQKIQ 161


>gi|126460649|ref|YP_001056927.1| NADH-quinone oxidoreductase, B subunit [Pyrobaculum calidifontis
           JCM 11548]
 gi|126250370|gb|ABO09461.1| NADH-quinone oxidoreductase, B subunit [Pyrobaculum calidifontis
           JCM 11548]
          Length = 145

 Score =  188 bits (477), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 65/142 (45%), Positives = 88/142 (61%), Gaps = 1/142 (0%)

Query: 36  KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDV 95
           +  L  +VD++  W    SL       ACC VE   A    YD ERFG  P  S RQS++
Sbjct: 2   RTLLKKTVDKVAKWGTKWSLWPPHLVTACCGVEFGHAFGSAYDAERFGMLPMGSLRQSNI 61

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
           +++ GT+T KMA  ++ VY+QMPEP+YVI+MG+CA  GG ++ SY +V    ++VPV  Y
Sbjct: 62  IVIEGTITMKMAKFVKYVYEQMPEPKYVIAMGACAIKGGVFYGSYHMV-PASKVVPVHQY 120

Query: 156 VPGCPPTAEALIYGILLLQKKI 177
           V GCPPT EAL+  +  LQ KI
Sbjct: 121 VSGCPPTPEALLKAVKNLQDKI 142


>gi|167045512|gb|ABZ10165.1| putative NADH ubiquinone oxidoreductase, 20 Kd subunit [uncultured
           marine microorganism HF4000_APKG10H11]
          Length = 182

 Score =  188 bits (477), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 64/139 (46%), Positives = 92/139 (66%)

Query: 43  VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL 102
           V +L+TW R  SL  +     CC+ E    +   YD+ERFG    A+ RQ D++I+ G +
Sbjct: 34  VKKLITWGRKNSLWVVHLTTGCCSPEFAALAGAGYDMERFGPLVMAAMRQCDILIIEGQV 93

Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162
            +KMA  ++R YDQMP+P+YVI++G+CA  GG+Y  SYS+V G D+I+PVD+YVPGCPP 
Sbjct: 94  ADKMAEVVKRTYDQMPDPKYVIAVGNCAISGGFYWDSYSMVMGIDKIIPVDVYVPGCPPR 153

Query: 163 AEALIYGILLLQKKIRRVG 181
            E  I  I L+Q ++ + G
Sbjct: 154 PEDWIDAIRLVQTRMDKEG 172


>gi|197121690|ref|YP_002133641.1| NADH dehydrogenase subunit B [Anaeromyxobacter sp. K]
 gi|238065027|sp|B4UIA7|NUOB2_ANASK RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName:
           Full=NADH dehydrogenase I subunit B 2; AltName:
           Full=NDH-1 subunit B 2
 gi|196171539|gb|ACG72512.1| NADH-quinone oxidoreductase, B subunit [Anaeromyxobacter sp. K]
          Length = 182

 Score =  187 bits (476), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 70/148 (47%), Positives = 102/148 (68%), Gaps = 2/148 (1%)

Query: 36  KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APRASPRQSD 94
           +GFL   V + + WAR  SL    F  ACC +E M  +  RYD +RFG   PR SPRQ+D
Sbjct: 19  EGFLQGLVSKSLGWARKYSLFTYPFVTACCGMEYMTMASARYDSDRFGAAMPRFSPRQAD 78

Query: 95  VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154
           +++V GT+  K A  L+RVY+QM +P++V++ G CA+ GG ++ +Y+ V+G DR++PVD+
Sbjct: 79  LLMVVGTVNCKQAPILQRVYEQMADPKWVMAFGVCASSGG-FYDNYATVQGIDRVIPVDV 137

Query: 155 YVPGCPPTAEALIYGILLLQKKIRRVGN 182
           YVPGCPP  E ++ GI+LLQKKI+   +
Sbjct: 138 YVPGCPPRPEQVLDGIMLLQKKIQNQSH 165


>gi|225847872|ref|YP_002728035.1| NADH dehydrogenase subunit B [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225643594|gb|ACN98644.1| NADH-quinone oxidoreductase, b subunit [Sulfurihydrogenibium
           azorense Az-Fu1]
          Length = 172

 Score =  187 bits (475), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 73/141 (51%), Positives = 110/141 (78%), Gaps = 1/141 (0%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
            + G ++T+V+++++W R  SL  ++ GLACCA+EMM  +  R+D +R G   R SPRQS
Sbjct: 5   VNSGIILTTVEEVLSWGRRNSLWPVSIGLACCAIEMMHTAASRFDTDRLGIIFRGSPRQS 64

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD 153
           DV+IVAGT+ NK+A  L+ +Y+QMP+P++VISMG C++GGG +  +YS ++G DRI+PVD
Sbjct: 65  DVLIVAGTVVNKVAPMLKLIYEQMPDPKWVISMGGCSSGGGPFP-TYSTLQGVDRIIPVD 123

Query: 154 IYVPGCPPTAEALIYGILLLQ 174
           +Y+PGCPPT +AL++GI+ LQ
Sbjct: 124 VYIPGCPPTPQALLWGIMELQ 144


>gi|220916486|ref|YP_002491790.1| NADH-quinone oxidoreductase, B subunit [Anaeromyxobacter
           dehalogenans 2CP-1]
 gi|238065052|sp|B8JH22|NUOB_ANAD2 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|219954340|gb|ACL64724.1| NADH-quinone oxidoreductase, B subunit [Anaeromyxobacter
           dehalogenans 2CP-1]
          Length = 182

 Score =  187 bits (475), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 70/148 (47%), Positives = 102/148 (68%), Gaps = 2/148 (1%)

Query: 36  KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APRASPRQSD 94
           +GFL   V + + WAR  SL    F  ACC +E M  +  RYD +RFG   PR SPRQ+D
Sbjct: 19  EGFLQGLVSKSLGWARKYSLFTYPFVTACCGMEYMTMASARYDSDRFGAAMPRFSPRQAD 78

Query: 95  VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154
           +++V GT+  K A  L+RVY+QM +P++V++ G CA+ GG ++ +Y+ V+G DR++PVD+
Sbjct: 79  LLMVVGTVNCKQAPILQRVYEQMADPKWVMAFGVCASSGG-FYDNYATVQGIDRVIPVDV 137

Query: 155 YVPGCPPTAEALIYGILLLQKKIRRVGN 182
           YVPGCPP  E ++ GI+LLQKKI+   +
Sbjct: 138 YVPGCPPRPEQVLDGIMLLQKKIQNQSH 165


>gi|291334203|gb|ADD93870.1| hypothetical protein [uncultured marine bacterium
           MedDCM-OCT-S08-C1340]
          Length = 118

 Score =  187 bits (475), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 91/116 (78%), Positives = 99/116 (85%)

Query: 69  MMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGS 128
           MM A   RYDL+RFG   R SPRQSDVMIVAGTL NKMA ALR+VYDQM +P++VISMGS
Sbjct: 1   MMHAGASRYDLDRFGMLFRPSPRQSDVMIVAGTLVNKMAPALRKVYDQMADPKWVISMGS 60

Query: 129 CANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           CANGGGYYHYSYSVVRGCDRIVPVD+YVPGCPPTAEAL+YGIL LQ KIR    +K
Sbjct: 61  CANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALLYGILQLQNKIRNKNRIK 116


>gi|224373442|ref|YP_002607814.1| NADH-ubiquinone oxidoreductase 20 kda subunit [Nautilia
           profundicola AmH]
 gi|223588944|gb|ACM92680.1| NADH-ubiquinone oxidoreductase 20 kda subunit [Nautilia
           profundicola AmH]
          Length = 157

 Score =  187 bits (474), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 61/138 (44%), Positives = 92/138 (66%)

Query: 42  SVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGT 101
            V     +AR+ S   + F   CC++EM+ A  PRYD ER+G+    +PRQ+D+M + G 
Sbjct: 3   KVLDFFNYARSKSPWIVHFCSGCCSLEMLAAMGPRYDWERYGYIMTPTPRQADIMFITGL 62

Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP 161
           ++ K+  AL R Y+QMPEPRYV+++G+CA  GG Y+ S SV++    I+P D++V GCPP
Sbjct: 63  VSKKILPALLRTYEQMPEPRYVVAIGACAYDGGPYNDSVSVIKNMTEILPADVFVAGCPP 122

Query: 162 TAEALIYGILLLQKKIRR 179
             EA+I G+  L++KI+R
Sbjct: 123 RPEAIIAGLEELKEKIKR 140


>gi|300775173|ref|ZP_07085035.1| NADH-quinone oxidoreductase subunit B [Chryseobacterium gleum ATCC
           35910]
 gi|300505913|gb|EFK37049.1| NADH-quinone oxidoreductase subunit B [Chryseobacterium gleum ATCC
           35910]
          Length = 186

 Score =  187 bits (474), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 63/151 (41%), Positives = 97/151 (64%), Gaps = 7/151 (4%)

Query: 36  KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQSD 94
           +GF  T +  ++  AR  SL  + F  +CC +E M    P YD  RFG      SPRQ+D
Sbjct: 21  EGFFATKLSSVIGMARKFSLWPLPFATSCCGIEFMATLNPTYDASRFGMERNSFSPRQAD 80

Query: 95  VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154
           +++V GT++ K+   L+ VY QM EP++V+++G+CA+ GG +  +YSV++G D+I+PVD+
Sbjct: 81  MLMVCGTISKKLGPVLKEVYTQMAEPKWVVAVGACASSGGIF-DTYSVLQGIDKIIPVDV 139

Query: 155 YVPGCPPTAEALIYGILLLQ-----KKIRRV 180
           YVPGCPP  E +I G++ +Q     + IRR 
Sbjct: 140 YVPGCPPRPEQIIEGVMQVQALAESESIRRR 170


>gi|313206215|ref|YP_004045392.1| NADH dehydrogenase subunit b [Riemerella anatipestifer DSM 15868]
 gi|312445531|gb|ADQ81886.1| NADH dehydrogenase subunit B [Riemerella anatipestifer DSM 15868]
 gi|315023100|gb|EFT36113.1| NADH dehydrogenase subunit B [Riemerella anatipestifer RA-YM]
 gi|325336338|gb|ADZ12612.1| NADH:ubiquinone oxidoreductase 20 kD subunit related Fe-S
           oxidoreductases [Riemerella anatipestifer RA-GD]
          Length = 184

 Score =  186 bits (473), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 63/142 (44%), Positives = 99/142 (69%), Gaps = 2/142 (1%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA-SPRQ 92
           + +GF  T +  L+  AR+ SL  + F  +CC +E M  +MP YD+ RFG    + SPRQ
Sbjct: 18  SGEGFFATKLSSLIGMARSYSLWPLPFATSCCGIEFMAMAMPTYDMARFGAERMSFSPRQ 77

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           +D ++V GT++ K+A  L++VY QM EP++VI++G+CA+ GG +  +YSV++G D+I+PV
Sbjct: 78  ADCLLVCGTISKKLAPVLKQVYSQMAEPKWVIAVGACASSGGIF-DTYSVLQGIDKIIPV 136

Query: 153 DIYVPGCPPTAEALIYGILLLQ 174
           D+YVPGCPP  E ++ G + +Q
Sbjct: 137 DVYVPGCPPRPEQILEGFMQVQ 158


>gi|298346119|ref|YP_003718806.1| NADH dehydrogenase [Mobiluncus curtisii ATCC 43063]
 gi|304390121|ref|ZP_07372075.1| NADH-quinone oxidoreductase subunit B [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
 gi|315654698|ref|ZP_07907604.1| NADH-quinone oxidoreductase subunit B [Mobiluncus curtisii ATCC
           51333]
 gi|315657378|ref|ZP_07910260.1| NADH-quinone oxidoreductase subunit B [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
 gi|298236180|gb|ADI67312.1| NADH dehydrogenase (quinone) [Mobiluncus curtisii ATCC 43063]
 gi|304326603|gb|EFL93847.1| NADH-quinone oxidoreductase subunit B [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
 gi|315491162|gb|EFU80781.1| NADH-quinone oxidoreductase subunit B [Mobiluncus curtisii ATCC
           51333]
 gi|315491850|gb|EFU81459.1| NADH-quinone oxidoreductase subunit B [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
          Length = 181

 Score =  186 bits (473), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 66/137 (48%), Positives = 104/137 (75%), Gaps = 2/137 (1%)

Query: 44  DQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQSDVMIVAGTL 102
           +++  +AR+ S+  +T GLACCA+EMM  +  R+D+ RFG    R+SPR +DVM+V+G +
Sbjct: 14  EKITDFARSLSIWPVTMGLACCAIEMMATAASRFDIARFGSEVFRSSPRHADVMLVSGRV 73

Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162
           ++KMA+ +R VYD+M +P++VISMG+CA+ GG ++  Y++V+GCD +VPVDIY+PGCPP 
Sbjct: 74  SHKMATIMRNVYDEMADPKWVISMGACASSGGVFNN-YAIVQGCDHVVPVDIYLPGCPPR 132

Query: 163 AEALIYGILLLQKKIRR 179
            E L+  +L L+  I++
Sbjct: 133 PEMLLGALLSLRDHIKQ 149


>gi|145592467|ref|YP_001154469.1| NADH-quinone oxidoreductase, B subunit [Pyrobaculum arsenaticum DSM
           13514]
 gi|145284235|gb|ABP51817.1| NADH-quinone oxidoreductase, B subunit [Pyrobaculum arsenaticum DSM
           13514]
          Length = 144

 Score =  186 bits (473), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 66/139 (47%), Positives = 89/139 (64%), Gaps = 1/139 (0%)

Query: 39  LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIV 98
           ++  VD+L  W    SL       ACC VE   A    YD ERFG  P  S RQS+++++
Sbjct: 4   ILKVVDRLRRWGTKWSLWPPHLVTACCGVEFGHAFGSAYDAERFGMLPMGSLRQSNIIVI 63

Query: 99  AGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPG 158
            GT+T KMA  ++ VY+QMPEP+YVI+MG+CA  GG ++ SY +V    ++VPVD YV G
Sbjct: 64  EGTITLKMAKFVKYVYEQMPEPKYVIAMGACAIKGGVFYGSYHMV-PAPKVVPVDGYVSG 122

Query: 159 CPPTAEALIYGILLLQKKI 177
           CPPT EAL+  +  LQ+KI
Sbjct: 123 CPPTPEALLKAVKELQEKI 141


>gi|86158991|ref|YP_465776.1| NADH dehydrogenase subunit B [Anaeromyxobacter dehalogenans 2CP-C]
 gi|123498617|sp|Q2IL12|NUOB1_ANADE RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName:
           Full=NADH dehydrogenase I subunit B 1; AltName:
           Full=NDH-1 subunit B 1
 gi|85775502|gb|ABC82339.1| NADH dehydrogenase subunit B [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 182

 Score =  186 bits (473), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 70/148 (47%), Positives = 102/148 (68%), Gaps = 2/148 (1%)

Query: 36  KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APRASPRQSD 94
           +GFL   V + + WAR  SL    F  ACC +E M  +  RYD +RFG   PR SPRQ+D
Sbjct: 19  EGFLQGLVSKSLGWARKYSLFTYPFVTACCGMEYMTMASARYDSDRFGAAMPRFSPRQAD 78

Query: 95  VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154
           +++V GT+  K A  L+R+Y+QM +P++V++ G CA+ GG ++ +Y+ V+G DRI+PVD+
Sbjct: 79  LLMVVGTVNCKQAPILQRIYEQMADPKWVMAFGVCASSGG-FYDNYATVQGIDRIIPVDV 137

Query: 155 YVPGCPPTAEALIYGILLLQKKIRRVGN 182
           YVPGCPP  E ++ GI+LLQKKI+   +
Sbjct: 138 YVPGCPPRPEQVLDGIMLLQKKIQNQSH 165


>gi|226227808|ref|YP_002761914.1| NADH-quinone oxidoreductase chain B [Gemmatimonas aurantiaca T-27]
 gi|226090999|dbj|BAH39444.1| NADH-quinone oxidoreductase chain B [Gemmatimonas aurantiaca T-27]
          Length = 171

 Score =  186 bits (472), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 73/141 (51%), Positives = 98/141 (69%), Gaps = 2/141 (1%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APRASPRQSDVM 96
           +L T  D+LV WAR  SL    F  ACCA+E M  S   YD +RFG   PR SPRQ+D++
Sbjct: 20  YLTTRKDELVGWARKFSLFPYPFVTACCAMEFMAVSASAYDTDRFGAALPRFSPRQADLL 79

Query: 97  IVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV 156
           +V GT+T K A  L +VY+QM EP++V++ G CA+ GG ++ +Y+ + G DRI+PVDIYV
Sbjct: 80  MVVGTVTQKQAPILLKVYEQMCEPKWVMAFGVCASTGG-FYQNYASLPGIDRIIPVDIYV 138

Query: 157 PGCPPTAEALIYGILLLQKKI 177
           PGCPP  E +I GI+ LQ+KI
Sbjct: 139 PGCPPRPEMVIDGIMRLQEKI 159


>gi|153948912|ref|YP_001400434.1| NADH dehydrogenase subunit B [Yersinia pseudotuberculosis IP 31758]
 gi|238065223|sp|A7FGQ6|NUOB_YERP3 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|152960407|gb|ABS47868.1| NADH-quinone oxidoreductase, B subunit [Yersinia pseudotuberculosis
           IP 31758]
          Length = 227

 Score =  186 bits (472), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 68/134 (50%), Positives = 91/134 (67%), Gaps = 2/134 (1%)

Query: 37  GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95
           G L  ++  +V W R  SL    FGL+CC VEM+ +    +D+ RFG    RASPRQ+D 
Sbjct: 41  GKLENAMHDMVNWGRKNSLWPYNFGLSCCYVEMVTSFTAVHDVARFGAEVLRASPRQADF 100

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
           M+VAGT   KMA  ++R+Y+QM EP++VISMG+CAN GG Y   YSVV+G D+ +PVD+Y
Sbjct: 101 MVVAGTCFTKMAPVIQRLYEQMLEPKWVISMGACANSGGMY-DIYSVVQGVDKFLPVDVY 159

Query: 156 VPGCPPTAEALIYG 169
           +PGCPP  EA +  
Sbjct: 160 IPGCPPRPEAYMQA 173


>gi|257437224|gb|ACV53599.1| NADH ubiqionone oxidoreductase chain B [Agrobacterium sp. ATCC
           31749]
          Length = 121

 Score =  186 bits (472), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 108/121 (89%), Positives = 115/121 (95%), Gaps = 1/121 (0%)

Query: 40  VTSVDQLVTWARTGSLMWMTFGLACCAVE-MMQASMPRYDLERFGFAPRASPRQSDVMIV 98
           VTS D+L+TWARTGSLMWM FGLACCAVE +MQAS PRYD+ERFG APRASPRQSDVMIV
Sbjct: 1   VTSTDELITWARTGSLMWMQFGLACCAVEGLMQASGPRYDMERFGVAPRASPRQSDVMIV 60

Query: 99  AGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPG 158
           AGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSY+VVRGCDR+VPVDIYVPG
Sbjct: 61  AGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYAVVRGCDRVVPVDIYVPG 120

Query: 159 C 159
           C
Sbjct: 121 C 121


>gi|255318317|ref|ZP_05359552.1| NADH-quinone oxidoreductase, B subunit [Acinetobacter
           radioresistens SK82]
 gi|262379061|ref|ZP_06072217.1| trifunctional NADH dehydrogenase I subunit B/C/D [Acinetobacter
           radioresistens SH164]
 gi|255304629|gb|EET83811.1| NADH-quinone oxidoreductase, B subunit [Acinetobacter
           radioresistens SK82]
 gi|262298518|gb|EEY86431.1| trifunctional NADH dehydrogenase I subunit B/C/D [Acinetobacter
           radioresistens SH164]
          Length = 225

 Score =  185 bits (471), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 70/158 (44%), Positives = 96/158 (60%), Gaps = 7/158 (4%)

Query: 12  SGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQL----VTWARTGSLMWMTFGLACCAV 67
                  L++       + SE+ +K   +T ++ +    V W R  S+    FG +CC V
Sbjct: 10  PDAEQYPLQERQIVTDPLESEV-NKNVFMTRLEDVLHTAVNWGRKNSIWPFNFGTSCCYV 68

Query: 68  EMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISM 126
           E        +D+ RFG    RASPRQ+D+MIVAGT   KMA  ++R+Y+QM EP++VISM
Sbjct: 69  EYATTLTGVHDMSRFGAEVIRASPRQADLMIVAGTCFTKMAPVIQRLYEQMLEPKWVISM 128

Query: 127 GSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164
           G+CAN GG Y   YSVV+G D+I+PVD+YVPGCPP  E
Sbjct: 129 GACANSGGMY-DIYSVVQGVDKIIPVDVYVPGCPPRPE 165


>gi|164662629|ref|XP_001732436.1| hypothetical protein MGL_0211 [Malassezia globosa CBS 7966]
 gi|159106339|gb|EDP45222.1| hypothetical protein MGL_0211 [Malassezia globosa CBS 7966]
          Length = 120

 Score =  185 bits (471), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 92/112 (82%), Positives = 101/112 (90%)

Query: 70  MQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSC 129
           M AS PRYD +R G   RA+PRQSD+MIVAGTLTNKMA ALR+VYDQMPEPR+VISMGSC
Sbjct: 1   MHASGPRYDQDRLGIVFRATPRQSDIMIVAGTLTNKMAPALRKVYDQMPEPRWVISMGSC 60

Query: 130 ANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
           ANGGGYYHYSYSVVRGCDRIVPVD+YVPGCPP+AEAL+YGIL LQ+KIRR  
Sbjct: 61  ANGGGYYHYSYSVVRGCDRIVPVDLYVPGCPPSAEALLYGILQLQRKIRRSR 112


>gi|239904914|ref|YP_002951652.1| Ech hydrogenase subunit EchC [Desulfovibrio magneticus RS-1]
 gi|239794777|dbj|BAH73766.1| Ech hydrogenase subunit EchC [Desulfovibrio magneticus RS-1]
          Length = 147

 Score =  185 bits (470), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 51/138 (36%), Positives = 84/138 (60%), Gaps = 3/138 (2%)

Query: 45  QLVTWARTGSLMWMTF---GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGT 101
            L+   R  S   + F       C +E++    P YD+ERFG     +P+ +DV++V GT
Sbjct: 4   NLINQGRIKSPWVVHFDCGSCNGCDIEVLACLTPLYDIERFGILNIGNPKHADVLLVTGT 63

Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP 161
           +  +    L+ +YDQMP P+ VI++G+C   GG +  +Y+VV G D+++PVD+YVPGCP 
Sbjct: 64  VNQRNKHVLKNIYDQMPTPKAVIAIGACGCSGGVFREAYNVVGGVDKVIPVDVYVPGCPA 123

Query: 162 TAEALIYGILLLQKKIRR 179
             EA+I G++   +K+++
Sbjct: 124 RPEAIIDGVVAALEKVKK 141


>gi|118431453|ref|NP_147936.2| NuoB-like protein [Aeropyrum pernix K1]
 gi|116062777|dbj|BAA80425.2| NuoB homolog [Aeropyrum pernix K1]
          Length = 199

 Score =  185 bits (469), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 58/137 (42%), Positives = 92/137 (67%), Gaps = 1/137 (0%)

Query: 42  SVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGT 101
            +D++V WA + SL  +    +CC+ E      PR D E+FG  P   PRQ++++I+ GT
Sbjct: 30  PLDKMVDWATSFSLWPVHLTTSCCSTEFAATFAPRIDGEQFGALPWVGPRQTNLIIIEGT 89

Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP 161
           +T KMA A+R  ++QMP P++ I+MG+CA  GG ++ SY++V+   +++P+DIY+PGCPP
Sbjct: 90  VTKKMACAVRLTWEQMPHPKFAIAMGACALDGGLFYNSYNIVKPW-QVLPIDIYIPGCPP 148

Query: 162 TAEALIYGILLLQKKIR 178
             E +   I+ LQ+KIR
Sbjct: 149 RPEGVARAIVELQRKIR 165


>gi|297625729|ref|YP_003687492.1| NADH-quinone oxidoreductase chain B [Propionibacterium
           freudenreichii subsp. shermanii CIRM-BIA1]
 gi|296921494|emb|CBL56048.1| NADH-quinone oxidoreductase chain B [Propionibacterium
           freudenreichii subsp. shermanii CIRM-BIA1]
          Length = 185

 Score =  185 bits (469), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 70/152 (46%), Positives = 102/152 (67%), Gaps = 3/152 (1%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APRAS 89
            E    G  +T+V+Q+  W R  S   +T GLACCA+EM+    PR D  R+G    RAS
Sbjct: 4   EEKLPAGIFLTTVEQVQGWMRQASFWPLTMGLACCAIEMISYGGPRADCSRWGQEIFRAS 63

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           PRQ+D+MIVAG +  K+A  +R+++DQMP P++ I+MG+CA+ GG ++  Y+VV+G D I
Sbjct: 64  PRQADLMIVAGRVGQKLAPVVRQLWDQMPNPKWCIAMGACASSGGVFNN-YAVVQGVDHI 122

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQK-KIRRV 180
           VPVD+Y+PGCPP  + LI  +  L+K K++  
Sbjct: 123 VPVDMYLPGCPPRPDMLIDAVFKLKKGKVQHT 154


>gi|255535796|ref|YP_003096167.1| NADH dehydrogenase subunit B [Flavobacteriaceae bacterium 3519-10]
 gi|255341992|gb|ACU08105.1| NADH-ubiquinone oxidoreductase chain B [Flavobacteriaceae bacterium
           3519-10]
          Length = 185

 Score =  185 bits (469), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 64/160 (40%), Positives = 99/160 (61%), Gaps = 7/160 (4%)

Query: 27  SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA- 85
           +        +GF  T +  ++  AR  SL  + F  +CC +E M    P YD  RFG   
Sbjct: 12  AEPPEGFEGEGFFATKLSSVIGMARKYSLWPLPFATSCCGIEFMAVLNPTYDASRFGMER 71

Query: 86  PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRG 145
              SPRQ+D+++V GT++ K+   L++VY QM EPR+V+++G+CA+ GG +  +YSV++G
Sbjct: 72  NSFSPRQADMLMVCGTISKKLGPVLKQVYTQMAEPRWVVAVGACASSGGIF-DTYSVLQG 130

Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQ-----KKIRRV 180
            D+I+PVD+YVPGCPP  E +I G++ +Q     + IRR 
Sbjct: 131 IDKIIPVDVYVPGCPPRPEQIIEGVMQVQALCEGESIRRR 170


>gi|159041010|ref|YP_001540262.1| NADH-quinone oxidoreductase, B subunit [Caldivirga maquilingensis
           IC-167]
 gi|157919845|gb|ABW01272.1| NADH-quinone oxidoreductase, B subunit [Caldivirga maquilingensis
           IC-167]
          Length = 374

 Score =  184 bits (468), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 67/157 (42%), Positives = 93/157 (59%), Gaps = 2/157 (1%)

Query: 23  DADFSRISSEITHKGFLVTSV-DQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLER 81
           D   + +   +   G  +  + D L +W    S+       ACC VE   AS P YD ER
Sbjct: 3   DTTVNTLKITLKSIGMDIKLLPDSLASWGTKFSIWPAHLVTACCGVEFAHASAPGYDAER 62

Query: 82  FGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYS 141
           +GF P   PRQ++ +++ GT+T KMA  ++  Y+QMP P++VI+MGSCA  GG +  SY 
Sbjct: 63  WGFLPIFGPRQTNSIVIEGTVTRKMARIVKTAYEQMPYPKFVIAMGSCAMEGGVFWNSYH 122

Query: 142 VVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           VVR  + IVPVD +V GCPPT EA+I  I ++Q KI 
Sbjct: 123 VVR-VNEIVPVDAWVMGCPPTPEAVIRAIRMVQSKIE 158


>gi|115378556|ref|ZP_01465711.1| NADH-quinone oxidoreductase chain b [Stigmatella aurantiaca
           DW4/3-1]
 gi|310820744|ref|YP_003953102.1| NADH-quinone oxidoreductase chain b [Stigmatella aurantiaca
           DW4/3-1]
 gi|115364428|gb|EAU63508.1| NADH-quinone oxidoreductase chain b [Stigmatella aurantiaca
           DW4/3-1]
 gi|309393816|gb|ADO71275.1| NADH-quinone oxidoreductase chain B [Stigmatella aurantiaca
           DW4/3-1]
          Length = 187

 Score =  184 bits (468), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 70/159 (44%), Positives = 104/159 (65%), Gaps = 4/159 (2%)

Query: 22  VDADFSRISSEITHK--GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDL 79
            + D + I +    +   FL   V + + WAR  SL    +  ACC +E M  +  R+DL
Sbjct: 2   AETDIAPIVTTRRDETVSFLQRVVSKGLGWARKYSLFTYPYATACCGMEYMSVAGGRHDL 61

Query: 80  ERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY 138
            RFG   PR SPRQ+D+++V GT+  K A  L+RVY+QM EP++V++ G CA+ GG ++ 
Sbjct: 62  ARFGAEYPRFSPRQADMLLVTGTINLKQAPILKRVYEQMCEPKWVVAFGVCASSGG-FYD 120

Query: 139 SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
           +Y+V++G DRI+PVD+Y+PGCPP  E ++  ILLLQ+KI
Sbjct: 121 NYAVLQGIDRIIPVDVYIPGCPPRPEQVLDAILLLQEKI 159


>gi|212224742|ref|YP_002307978.1| membrane bound hydrogenase, NiFe-hydrogenase small subunit
           [Thermococcus onnurineus NA1]
 gi|212009699|gb|ACJ17081.1| membrane bound hydrogenase, NiFe-hydrogenase small subunit
           [Thermococcus onnurineus NA1]
          Length = 175

 Score =  184 bits (468), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 58/163 (35%), Positives = 92/163 (56%), Gaps = 4/163 (2%)

Query: 21  KVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMT---FGLACCAVEMMQASMPRY 77
           KV AD +R +   + +  L   + QL  +    S             C +E++ A  PRY
Sbjct: 4   KVPADQNRTNGTTSEREMLEKRIAQLCRFIGR-SPWVFHVNSGSCNGCDIEIIAALTPRY 62

Query: 78  DLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137
           D ERFG     SPR +DV++V G +T++    ++ VY+Q P+P+ VI++GSC  GG  ++
Sbjct: 63  DAERFGVKLVGSPRHADVLLVTGPVTDQSLERVKLVYEQTPDPKIVIAVGSCPTGGSVFY 122

Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
            S         I+PVD+YVPGCPP  EA++YG++L  +K+ ++
Sbjct: 123 ESPFTNAPLSNIIPVDVYVPGCPPRPEAILYGVVLALEKLAKI 165


>gi|149195032|ref|ZP_01872124.1| proton-translocating NADH-quinone oxidoreductase, B subunit
           [Caminibacter mediatlanticus TB-2]
 gi|149134745|gb|EDM23229.1| proton-translocating NADH-quinone oxidoreductase, B subunit
           [Caminibacter mediatlanticus TB-2]
          Length = 157

 Score =  184 bits (467), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 59/138 (42%), Positives = 92/138 (66%)

Query: 42  SVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGT 101
            V     +AR+ S   + F   CC++EM+ A  PRYD ER+G+    +PRQ+D++ + G 
Sbjct: 3   KVLDFFNYARSKSPWIVHFCSGCCSLEMLAAMGPRYDWERYGYMMTPTPRQADIIFITGL 62

Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP 161
           ++ K+  AL R Y+QMPEPRYV+++G+CA  GG Y+ S SV++    I+P D++V GCPP
Sbjct: 63  VSKKILPALLRTYEQMPEPRYVVAIGACAYDGGPYNDSPSVIKNMTEILPADVFVAGCPP 122

Query: 162 TAEALIYGILLLQKKIRR 179
             EA++ G+  L++KI+R
Sbjct: 123 KPEAIVAGLEELKEKIKR 140


>gi|332701743|ref|ZP_08421831.1| NADH-quinone oxidoreductase, B subunit [Desulfovibrio africanus
           str. Walvis Bay]
 gi|332551892|gb|EGJ48936.1| NADH-quinone oxidoreductase, B subunit [Desulfovibrio africanus
           str. Walvis Bay]
          Length = 179

 Score =  184 bits (467), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 51/140 (36%), Positives = 84/140 (60%), Gaps = 3/140 (2%)

Query: 40  VTSVDQLVTWARTGSLMWMTF---GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVM 96
           ++ +   +  +R  S   + F       C +E +    P YD+ERFG     +P+ +DV+
Sbjct: 1   MSIIKNFINKSRIKSPWIVHFDCGSCNGCDIETLAVLTPLYDVERFGIINVGNPKHADVL 60

Query: 97  IVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV 156
           +V GT+  +    L+ +Y+QMP P+ V+++G+C   GG +   Y+VV G DR++PVD+YV
Sbjct: 61  LVTGTVNYRNQHVLKTIYEQMPHPKAVVAIGACGLSGGVFRDCYNVVGGVDRVIPVDVYV 120

Query: 157 PGCPPTAEALIYGILLLQKK 176
           PGCPP  EA+I G++L  +K
Sbjct: 121 PGCPPKPEAIIDGVVLGLEK 140


>gi|283852201|ref|ZP_06369474.1| NADH-quinone oxidoreductase, B subunit [Desulfovibrio sp. FW1012B]
 gi|283572427|gb|EFC20414.1| NADH-quinone oxidoreductase, B subunit [Desulfovibrio sp. FW1012B]
          Length = 176

 Score =  184 bits (467), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 73/141 (51%), Positives = 102/141 (72%), Gaps = 3/141 (2%)

Query: 40  VTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQSDVMIV 98
             +V +LV   R  S+  MTFGLACCA+EMM   M R+D+ R+G    R SPRQSD+MIV
Sbjct: 22  TPAVQKLVDVCRAMSIWPMTFGLACCAIEMMAVGMARFDIARYGAEVFRPSPRQSDLMIV 81

Query: 99  AGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH--YSYSVVRGCDRIVPVDIYV 156
           AGT+  K+A A+ R+++QMP PRYV+++G+CA  GG ++    Y+VV+G D ++PVD+YV
Sbjct: 82  AGTVNKKIAPAVVRLFEQMPAPRYVMALGNCAISGGPFNIEGQYNVVQGVDTLIPVDVYV 141

Query: 157 PGCPPTAEALIYGILLLQKKI 177
           PGCPP  EAL+ G+  +Q+KI
Sbjct: 142 PGCPPRPEALLEGLFAIQQKI 162


>gi|297569884|ref|YP_003691228.1| NADH-quinone oxidoreductase, B subunit [Desulfurivibrio
           alkaliphilus AHT2]
 gi|296925799|gb|ADH86609.1| NADH-quinone oxidoreductase, B subunit [Desulfurivibrio
           alkaliphilus AHT2]
          Length = 177

 Score =  183 bits (466), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 67/146 (45%), Positives = 93/146 (63%), Gaps = 3/146 (2%)

Query: 21  KVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLE 80
           K+     +   +          +D+L+   R  SL  MTFGLACCA+EMM     R+DL+
Sbjct: 3   KLPNHSEQRPQDDHPPVVQFAVLDKLLNLGRANSLWPMTFGLACCAIEMMATGASRFDLD 62

Query: 81  RFGF-APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY--YH 137
           RFG    R +P+QSDVMIVAGT++ KMA A+  +Y+QMP P++VI+MG+CA  GG   + 
Sbjct: 63  RFGAGVFRPAPKQSDVMIVAGTISKKMAPAIVTLYEQMPHPKWVIAMGNCAISGGPFVFE 122

Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTA 163
             Y +V G D+I+PVD+Y+PGCPP  
Sbjct: 123 GQYGIVEGADKILPVDVYIPGCPPRP 148


>gi|296272277|ref|YP_003654908.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Arcobacter
           nitrofigilis DSM 7299]
 gi|296096452|gb|ADG92402.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Arcobacter
           nitrofigilis DSM 7299]
          Length = 271

 Score =  183 bits (464), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 50/143 (34%), Positives = 86/143 (60%), Gaps = 1/143 (0%)

Query: 29  ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPR 87
           +  EI +   L   ++ L    R+ ++  +  G    C +E+  A  P +D ER GF   
Sbjct: 7   VPEEIENSNTLEAKLEHLKNIKRSFNVYRVDCGSCNGCEIEVFAAITPMWDPERLGFKLV 66

Query: 88  ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCD 147
           ASPR +D+++ +G +T +M   L R Y+  P+P+ V+++G+C + GG +H +YSV  G D
Sbjct: 67  ASPRHADILLCSGPVTRQMYYPLLRAYEATPDPKVVVAIGACGSSGGIFHDAYSVWGGID 126

Query: 148 RIVPVDIYVPGCPPTAEALIYGI 170
           +++PVD+Y+PGCPP    +I+G+
Sbjct: 127 KVIPVDVYIPGCPPHPATIIHGL 149


>gi|119871844|ref|YP_929851.1| NADH-quinone oxidoreductase, B subunit [Pyrobaculum islandicum DSM
           4184]
 gi|119673252|gb|ABL87508.1| NADH-quinone oxidoreductase, B subunit [Pyrobaculum islandicum DSM
           4184]
          Length = 147

 Score =  183 bits (464), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 63/142 (44%), Positives = 91/142 (64%), Gaps = 1/142 (0%)

Query: 36  KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDV 95
           +G +  +V ++  W    SL       ACC VE      P YD ERFG  P  S RQS++
Sbjct: 2   RGAISQAVSRVARWGTKWSLWPPHLVTACCGVEFAHTFGPAYDAERFGMLPIGSLRQSNI 61

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
           +I+ GT+T KMA  ++ +YDQMPEP+YVI+MG+CA  GG ++ SY +V    ++VPV++Y
Sbjct: 62  LILEGTITLKMAKFVKYIYDQMPEPKYVIAMGACAIKGGVFYGSYHMV-PASKVVPVNVY 120

Query: 156 VPGCPPTAEALIYGILLLQKKI 177
           V GCPPT EA++  +  +QK+I
Sbjct: 121 VSGCPPTPEAVLKAVEKIQKQI 142


>gi|50555305|ref|XP_505061.1| YALI0F06050p [Yarrowia lipolytica]
 gi|49650931|emb|CAG77868.1| YALI0F06050p [Yarrowia lipolytica]
          Length = 216

 Score =  182 bits (463), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 91/143 (63%), Positives = 106/143 (74%), Gaps = 2/143 (1%)

Query: 12  SGQSSCSLEKVDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVEM 69
           +G    S   +  DF   S +  +    + +T++D +  WAR GS   +TFGLACCAVEM
Sbjct: 31  AGTPRVSSSSMPTDFPLPSQQKPNSAVDYTLTTLDAVANWARQGSFWPVTFGLACCAVEM 90

Query: 70  MQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSC 129
           M  S PRYD +R G   RASPRQSD+MIVAGTLTNKMA  LR+VYDQMPEPR+VISMGSC
Sbjct: 91  MHVSAPRYDQDRLGIIFRASPRQSDIMIVAGTLTNKMAPVLRQVYDQMPEPRWVISMGSC 150

Query: 130 ANGGGYYHYSYSVVRGCDRIVPV 152
           ANGGGYYH+SYSVVRGCDRIVPV
Sbjct: 151 ANGGGYYHFSYSVVRGCDRIVPV 173


>gi|284042616|ref|YP_003392956.1| NADH-quinone oxidoreductase, B subunit [Conexibacter woesei DSM
           14684]
 gi|283946837|gb|ADB49581.1| NADH-quinone oxidoreductase, B subunit [Conexibacter woesei DSM
           14684]
          Length = 229

 Score =  182 bits (463), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 73/168 (43%), Positives = 109/168 (64%), Gaps = 4/168 (2%)

Query: 11  ISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMM 70
           I  Q +  + + D    R   +   +  L T++D++  WAR  S+   TFGLACCA+EMM
Sbjct: 22  IQQQRARDMLRGDL-TDRELEQYVEERVLTTTLDKVTAWARGNSMFPATFGLACCAIEMM 80

Query: 71  QASMPRYDLERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSC 129
                R D+ RFGF   RASPRQ+D++I++G ++ KMA  +RR+YDQM EPR+ ISMG+C
Sbjct: 81  SLPGARLDIGRFGFEAFRASPRQADMLILSGRVSIKMAPIVRRIYDQMLEPRWAISMGAC 140

Query: 130 ANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
            +  G ++  Y++V   D+ +P+D++VPGCPP  EAL + IL L+ K+
Sbjct: 141 CSSMGVFNN-YALV-PADKFMPIDVHVPGCPPRPEALAHAILKLRSKV 186


>gi|308232348|ref|ZP_07415800.2| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis
           SUMu001]
 gi|308370160|ref|ZP_07420526.2| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis
           SUMu002]
 gi|308371244|ref|ZP_07424331.2| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis
           SUMu003]
 gi|308372436|ref|ZP_07428696.2| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis
           SUMu004]
 gi|308374785|ref|ZP_07437401.2| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis
           SUMu006]
 gi|308376000|ref|ZP_07445800.2| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis
           SUMu007]
 gi|308377233|ref|ZP_07441611.2| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis
           SUMu008]
 gi|308378201|ref|ZP_07668686.1| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis
           SUMu009]
 gi|308380583|ref|ZP_07490460.2| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis
           SUMu011]
 gi|308214175|gb|EFO73574.1| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis
           SUMu001]
 gi|308324950|gb|EFP13801.1| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis
           SUMu002]
 gi|308329366|gb|EFP18217.1| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis
           SUMu003]
 gi|308333195|gb|EFP22046.1| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis
           SUMu004]
 gi|308340526|gb|EFP29377.1| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis
           SUMu006]
 gi|308344466|gb|EFP33317.1| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis
           SUMu007]
 gi|308348462|gb|EFP37313.1| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis
           SUMu008]
 gi|308353092|gb|EFP41943.1| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis
           SUMu009]
 gi|308361019|gb|EFP49870.1| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis
           SUMu011]
          Length = 157

 Score =  182 bits (462), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 67/127 (52%), Positives = 97/127 (76%), Gaps = 2/127 (1%)

Query: 55  LMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRV 113
           +   TFGLACCA+EMM  + PR+D+ RFG     A+PRQ+D+MIVAG ++ KMA  LR++
Sbjct: 1   MWPATFGLACCAIEMMATAGPRFDIARFGMERFSATPRQADLMIVAGRVSQKMAPVLRQI 60

Query: 114 YDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLL 173
           YDQM EP++V++MG CA+ GG ++  Y++V+G D +VPVDIY+PGCPP  E L++ IL L
Sbjct: 61  YDQMAEPKWVLAMGVCASSGGMFNN-YAIVQGVDHVVPVDIYLPGCPPRPEMLLHAILKL 119

Query: 174 QKKIRRV 180
            +KI+++
Sbjct: 120 HEKIQQM 126


>gi|255513406|gb|EET89672.1| NADH-quinone oxidoreductase, B subunit [Candidatus Micrarchaeum
           acidiphilum ARMAN-2]
          Length = 206

 Score =  182 bits (461), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 67/171 (39%), Positives = 101/171 (59%), Gaps = 7/171 (4%)

Query: 8   QKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAV 67
            K++           +  F R+S       F     + +V W+R+ S+  M FGLACCA+
Sbjct: 18  TKMLQDSLKKRKTPTNTMFLRLSD------FSKAVSNGVVKWSRSNSMWPMLFGLACCAI 71

Query: 68  EMMQASMPRYDLERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISM 126
           E+M     R D ER G+   R +PRQ DVMIVAG +T  M   ++R+Y+QM  P+YV++ 
Sbjct: 72  ELMDFGAARIDAERKGYLLFRGTPRQCDVMIVAGWVTKSMVPRVKRLYEQMASPKYVVAY 131

Query: 127 GSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
           G CA  GG ++ SY++V+G D+++PVD+Y  GCPP  E L   ++ LQ+K+
Sbjct: 132 GECATAGGPWYESYNIVKGIDQVLPVDVYAIGCPPKPENLFAALMKLQEKV 182


>gi|283853893|ref|ZP_06371106.1| NADH-quinone oxidoreductase, B subunit [Desulfovibrio sp. FW1012B]
 gi|283570716|gb|EFC18763.1| NADH-quinone oxidoreductase, B subunit [Desulfovibrio sp. FW1012B]
          Length = 147

 Score =  181 bits (460), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 50/137 (36%), Positives = 84/137 (61%), Gaps = 3/137 (2%)

Query: 45  QLVTWARTGSLMWMTF---GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGT 101
            ++   R  S   + F       C +E++    P YD+ERFG     +P+ +DV++V GT
Sbjct: 4   NMINQGRIKSPWVVHFDCGSCNGCDIEVLACLTPLYDIERFGIINVGNPKHADVLLVTGT 63

Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP 161
           + ++    L+ +YDQMP P+ VI++G+C   GG +  +Y+VV G D+++PVD+YVPGCP 
Sbjct: 64  VNHRNKHVLKNIYDQMPGPKAVIAIGACGCTGGVFREAYNVVGGVDKVIPVDVYVPGCPA 123

Query: 162 TAEALIYGILLLQKKIR 178
             EA+I G++   +K++
Sbjct: 124 RPEAIIDGVVAALEKVK 140


>gi|254847826|gb|ACT83735.1| NADH dehydrogenase ubiquinone Fe-S 7 protein-like protein
           [Piriformospora indica]
          Length = 120

 Score =  181 bits (460), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 89/112 (79%), Positives = 98/112 (87%)

Query: 71  QASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCA 130
             +  RYD +R G   RASPRQSD+MIVAGTLTNKMA ALR+VYDQMPEPR+VISMGSCA
Sbjct: 1   HMAAARYDQDRLGIVFRASPRQSDIMIVAGTLTNKMAPALRKVYDQMPEPRWVISMGSCA 60

Query: 131 NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
           NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG+L LQ+K+RR   
Sbjct: 61  NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGVLQLQRKMRRNRK 112


>gi|14520920|ref|NP_126395.1| NADH dehydrogenase subunit B [Pyrococcus abyssi GE5]
 gi|5458137|emb|CAB49626.1| nuoB NADH dehydrogenase I, subunit B [Pyrococcus abyssi GE5]
          Length = 195

 Score =  181 bits (460), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 52/136 (38%), Positives = 78/136 (57%)

Query: 43  VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL 102
            + L  WAR  SL  ++F   C  +EM      RYD+ERFG  P  SPRQ D+ ++ G +
Sbjct: 10  FEPLFNWARKKSLWIVSFCTGCGGIEMPPLMTSRYDIERFGMIPDPSPRQYDLFLITGYV 69

Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162
           T K    +   Y+  P+P+YV++ GSC   GG Y  SY+ ++  D+ +PVD+++ GC P 
Sbjct: 70  TPKTLKRIIITYELSPDPKYVLAHGSCPLNGGIYWDSYNAIKHLDKYIPVDVFIAGCMPR 129

Query: 163 AEALIYGILLLQKKIR 178
            EA++ GI  L + I 
Sbjct: 130 PEAVLDGIYKLMEMIE 145


>gi|297303011|ref|XP_002806097.1| PREDICTED: NADH-quinone oxidoreductase subunit B-like, partial
           [Macaca mulatta]
          Length = 170

 Score =  181 bits (460), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 70/131 (53%), Positives = 91/131 (69%), Gaps = 2/131 (1%)

Query: 52  TGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASAL 110
             SL    FGL+CC VEM  A    +D+ RFG    RASPRQ+D M++AGT   KMA  +
Sbjct: 1   KNSLWPYNFGLSCCYVEMTTAFTAPHDIARFGAEVIRASPRQADFMVIAGTCFIKMAPII 60

Query: 111 RRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGI 170
           +R+Y+QM EP++VISMGSCAN GG Y   YSVV+G D+ +PVD+YVPGCPP  EA + G+
Sbjct: 61  QRLYEQMLEPKWVISMGSCANSGGMY-DIYSVVQGVDKFLPVDVYVPGCPPRPEAFLQGL 119

Query: 171 LLLQKKIRRVG 181
           +LLQ+ I +  
Sbjct: 120 MLLQESIGKER 130


>gi|254166707|ref|ZP_04873561.1| NADH-quinone oxidoreductase, B subunit subfamily [Aciduliprofundum
           boonei T469]
 gi|254167366|ref|ZP_04874218.1| NADH-quinone oxidoreductase, B subunit subfamily [Aciduliprofundum
           boonei T469]
 gi|289596350|ref|YP_003483046.1| NADH-quinone oxidoreductase, B subunit [Aciduliprofundum boonei
           T469]
 gi|197623629|gb|EDY36192.1| NADH-quinone oxidoreductase, B subunit subfamily [Aciduliprofundum
           boonei T469]
 gi|197624317|gb|EDY36878.1| NADH-quinone oxidoreductase, B subunit subfamily [Aciduliprofundum
           boonei T469]
 gi|289534137|gb|ADD08484.1| NADH-quinone oxidoreductase, B subunit [Aciduliprofundum boonei
           T469]
          Length = 146

 Score =  181 bits (460), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 55/135 (40%), Positives = 82/135 (60%), Gaps = 3/135 (2%)

Query: 53  GSLMWMT---FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASA 109
            SL            C +E++ A  PRYD+ERFG     SPR +D ++V G +T  M   
Sbjct: 11  RSLWVFHVNTGSCNGCDIEILAALTPRYDVERFGIKLVGSPRHADALLVTGPVTRDMEDK 70

Query: 110 LRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYG 169
           ++R Y+Q+P+P+ VI +GSC   GG +H SY++V   D+++PVD+YVPGCPP  EA+I G
Sbjct: 71  VKRFYEQVPDPKVVIVIGSCGISGGVFHESYNLVGPVDKVIPVDVYVPGCPPRPEAIIDG 130

Query: 170 ILLLQKKIRRVGNVK 184
           ++    K+ R+   K
Sbjct: 131 VVKAWMKLERLRREK 145


>gi|262197697|ref|YP_003268906.1| NADH-quinone oxidoreductase subunit beta [Haliangium ochraceum DSM
           14365]
 gi|262081044|gb|ACY17013.1| NADH-quinone oxidoreductase, B subunit [Haliangium ochraceum DSM
           14365]
          Length = 167

 Score =  181 bits (459), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 61/142 (42%), Positives = 95/142 (66%), Gaps = 2/142 (1%)

Query: 39  LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APRASPRQSDVMI 97
           + T V+    W R  SL    F  ACC +E M  + P+YD+ RFG   PR SPRQSD+++
Sbjct: 6   VTTRVEDAANWGRKFSLFTYPFVTACCGMEFMSVAAPKYDIARFGAEFPRFSPRQSDLLM 65

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           V GT+T +    L+RVY+QM EP +V++ G CA+ GG ++ +YS + G D+++PVDIY+P
Sbjct: 66  VVGTITERQGPVLKRVYEQMAEPNWVVAFGVCASTGG-FYQNYSAMPGADQVIPVDIYIP 124

Query: 158 GCPPTAEALIYGILLLQKKIRR 179
           GCPP  E ++  +++LQ++++ 
Sbjct: 125 GCPPRPEQVLDALIMLQQRVQE 146


>gi|171186236|ref|YP_001795155.1| NADH-quinone oxidoreductase, B subunit [Thermoproteus neutrophilus
           V24Sta]
 gi|170935448|gb|ACB40709.1| NADH-quinone oxidoreductase, B subunit [Thermoproteus neutrophilus
           V24Sta]
          Length = 147

 Score =  181 bits (459), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 62/147 (42%), Positives = 90/147 (61%), Gaps = 1/147 (0%)

Query: 36  KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDV 95
           KG +  +V ++  W    SL       ACC VE   A    YD ERFG  P  S RQS++
Sbjct: 2   KGAISQAVSRVARWGTKWSLWPPHLVTACCGVEFAHAFGSAYDAERFGMLPMGSLRQSNI 61

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
           +I+ GT+T KMA  ++ +YDQMPEP+YVI+MG+CA  GG ++ SY +V    ++VPV  Y
Sbjct: 62  LILEGTITLKMAKFVKYIYDQMPEPKYVIAMGACAIKGGVFYGSYHMV-PASKVVPVHAY 120

Query: 156 VPGCPPTAEALIYGILLLQKKIRRVGN 182
           + GCPPT EA++  +  +Q++I    +
Sbjct: 121 ISGCPPTPEAVLKAVEKVQERISHAES 147


>gi|126464931|ref|YP_001040040.1| NADH-quinone oxidoreductase, B subunit [Staphylothermus marinus F1]
 gi|126013754|gb|ABN69132.1| NADH-quinone oxidoreductase, B subunit [Staphylothermus marinus F1]
          Length = 165

 Score =  181 bits (459), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 56/130 (43%), Positives = 86/130 (66%), Gaps = 3/130 (2%)

Query: 52  TGSLMWMTF---GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108
             +   + F       C +E++ A  P YD ERFG     S R +D+++V G +T K A 
Sbjct: 28  RYTPWLIHFNTGACNGCDIEVLAAITPLYDPERFGIKLAPSIRHADILVVTGAVTKKAAE 87

Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168
            L+R+Y+QMP+P++V+++G+CA  GG +H SYSV+ G D+++PVDIYVPGCPP  EA++ 
Sbjct: 88  RLKRLYEQMPDPKFVVAVGACAISGGVFHNSYSVLAGTDKVIPVDIYVPGCPPRPEAILD 147

Query: 169 GILLLQKKIR 178
           GI+ L K++ 
Sbjct: 148 GIVKLLKRLE 157


>gi|297616846|ref|YP_003702005.1| NADH dehydrogenase (quinone) [Syntrophothermus lipocalidus DSM
           12680]
 gi|297144683|gb|ADI01440.1| NADH dehydrogenase (quinone) [Syntrophothermus lipocalidus DSM
           12680]
          Length = 165

 Score =  181 bits (459), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 58/142 (40%), Positives = 83/142 (58%), Gaps = 3/142 (2%)

Query: 46  LVTWARTGSLMWMTF---GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL 102
           LV  AR+ S   M F   G   C++E+     P YDLERFG     +P+ +DV++V GT+
Sbjct: 3   LVHRARSKSPWVMHFDTAGCNGCSIEVFACFTPLYDLERFGIVNVGNPKHADVLLVTGTV 62

Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162
            +K    L+ VYDQM  P+ ++++G CA  G  +H SY+ + G D++VPVD+YVPGC   
Sbjct: 63  NHKAKRVLKTVYDQMNHPKVIVAVGICATSGNVFHQSYNCLGGVDKVVPVDVYVPGCAAR 122

Query: 163 AEALIYGILLLQKKIRRVGNVK 184
            E +I GI L  KK+      K
Sbjct: 123 PEVIIDGIFLALKKLEEKRRDK 144


>gi|117925498|ref|YP_866115.1| NADH dehydrogenase subunit B [Magnetococcus sp. MC-1]
 gi|117609254|gb|ABK44709.1| Membrane bound protein complex subunit mbxJ [Magnetococcus sp.
           MC-1]
          Length = 213

 Score =  181 bits (459), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 65/175 (37%), Positives = 98/175 (56%), Gaps = 1/175 (0%)

Query: 6   VNQKIISGQSSCSLEKVD-ADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLAC 64
           + ++ ++G      E     D+   ++     G  +  V+ L  WAR+ S+  + FG  C
Sbjct: 5   LEKRTVTGPDGQVFEVDPLKDYFCEATPTVQTGEYLQIVEDLFNWARSNSIWVLGFGTGC 64

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
            A+EM     PR+D  R+G   RA+PRQS++ IV+G L+ K    + R Y+QM  P+YV+
Sbjct: 65  GAIEMRPLMTPRFDAYRYGVQWRATPRQSNLFIVSGYLSVKTLKRVVRAYEQMQSPKYVM 124

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
            +GSC   GG Y  SY+ ++  D  +PVD+YV GC P  EAL+ GI  L+K IR 
Sbjct: 125 GLGSCTINGGMYWDSYNTIKQLDDYLPVDLYVTGCMPRPEALLSGIEALKKIIRE 179


>gi|118474722|ref|YP_891335.1| hydrogenase-Ni,Fe-hydrogenase III small subunit [Campylobacter
           fetus subsp. fetus 82-40]
 gi|118413948|gb|ABK82368.1| hydrogenase-ni,fe-hydrogenase III small subunit [Campylobacter
           fetus subsp. fetus 82-40]
          Length = 271

 Score =  181 bits (459), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 55/157 (35%), Positives = 92/157 (58%), Gaps = 5/157 (3%)

Query: 29  ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPR 87
           +  +I     L + ++ L    R+ S+  +  G    C +E+  A  P +D ERFGF   
Sbjct: 4   VPDDIQRSNDLNSKLNLLKNIKRSFSVFRIDCGSCNGCEIEIFAALSPLWDPERFGFKLV 63

Query: 88  ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCD 147
           A+PR +D++IV+G +T +M   L R Y+  P+P+ V+  G+C   GG +H SY+V  G D
Sbjct: 64  ANPRHADILIVSGPITRQMYYPLLRAYEATPDPKIVVGFGACGVSGGIFHDSYAVWGGAD 123

Query: 148 RIVPVDIYVPGCPPTAEALIYGIL----LLQKKIRRV 180
           +I+PVD++VPGCPP   ++IY +     L+++K+ + 
Sbjct: 124 KILPVDVFVPGCPPHPASIIYALATAVGLIEQKLEKQ 160


>gi|154175443|ref|YP_001407625.1| hypothetical protein CCV52592_1637 [Campylobacter curvus 525.92]
 gi|112802282|gb|EAT99626.1| HsdS [Campylobacter curvus 525.92]
          Length = 274

 Score =  181 bits (459), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 55/158 (34%), Positives = 92/158 (58%), Gaps = 1/158 (0%)

Query: 28  RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAP 86
           ++  +I     L   ++ L    R+ S+  +  G    C +E+  A  P +D ERFGF  
Sbjct: 5   QVPQDIKTANDLTAKLEHLKNIKRSFSVYRIDCGSCNGCEIEIFAAITPMWDPERFGFKL 64

Query: 87  RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGC 146
            A+PR +D++I +G +T +M   L R Y+  P+P+ V++ G+C + GG +H +YSV  G 
Sbjct: 65  VANPRHADILICSGPVTRQMYYPLLRAYEAAPDPKIVVAFGACGSSGGIFHDAYSVWGGI 124

Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           D+I+PVD+Y+PGCPP   ++IYG+ +    I +  + K
Sbjct: 125 DKIIPVDVYIPGCPPHPASVIYGLGMALGIIDQKLHKK 162


>gi|326390323|ref|ZP_08211882.1| NADH-quinone oxidoreductase, B subunit [Thermoanaerobacter
           ethanolicus JW 200]
 gi|325993600|gb|EGD52033.1| NADH-quinone oxidoreductase, B subunit [Thermoanaerobacter
           ethanolicus JW 200]
          Length = 198

 Score =  180 bits (458), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 52/136 (38%), Positives = 83/136 (61%)

Query: 43  VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL 102
           +D L+ + R  S+  + +   C AVE+  +   R+D+ERFG  P A+PRQ+DV++V G +
Sbjct: 13  IDNLIDFFRKRSIWMLHYCTGCGAVELPPSMTSRWDIERFGIVPMATPRQADVLLVTGYV 72

Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162
           + K    + ++Y+QMPEP++V++ GSC   GG Y  SY+ +      +PVDI V GC P 
Sbjct: 73  SLKTLKRIIKIYEQMPEPKWVLAFGSCTVNGGIYWDSYNTITNLAEYIPVDITVSGCMPR 132

Query: 163 AEALIYGILLLQKKIR 178
            EA+I  +  L + I+
Sbjct: 133 PEAVIDALQTLMEMIQ 148


>gi|222100331|ref|YP_002534899.1| NADH dehydrogenase [Thermotoga neapolitana DSM 4359]
 gi|221572721|gb|ACM23533.1| NADH dehydrogenase [Thermotoga neapolitana DSM 4359]
          Length = 178

 Score =  180 bits (458), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 53/139 (38%), Positives = 83/139 (59%)

Query: 41  TSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAG 100
           T  +++    R+ S+  + +   C AVE+  +   R+D+ERFG AP A+PRQ+D++++ G
Sbjct: 5   TVWERIADALRSRSIWMLHYCTGCGAVELPPSMTSRFDMERFGIAPMATPRQADILLITG 64

Query: 101 TLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCP 160
            L  K    +   Y+QMP+P+YV+  GSC   GG Y  SY+ V   D  +PVD+Y+ GC 
Sbjct: 65  YLNTKTLRRVIYTYEQMPDPKYVVGFGSCTINGGIYFDSYATVNRLDYYIPVDVYIAGCM 124

Query: 161 PTAEALIYGILLLQKKIRR 179
           P  EA++     L +KIR+
Sbjct: 125 PRPEAILEAFNYLMEKIRK 143


>gi|307265396|ref|ZP_07546952.1| NADH-quinone oxidoreductase, B subunit [Thermoanaerobacter wiegelii
           Rt8.B1]
 gi|306919510|gb|EFN49728.1| NADH-quinone oxidoreductase, B subunit [Thermoanaerobacter wiegelii
           Rt8.B1]
          Length = 198

 Score =  180 bits (458), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 52/136 (38%), Positives = 83/136 (61%)

Query: 43  VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL 102
           +D L+ + R  S+  + +   C AVE+  +   R+D+ERFG  P A+PRQ+DV++V G +
Sbjct: 13  IDNLIDFFRKRSIWILHYCTGCGAVELPPSMTSRWDIERFGIVPMATPRQADVLLVTGYV 72

Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162
           + K    + ++Y+QMPEP++V++ GSC   GG Y  SY+ +      +PVDI V GC P 
Sbjct: 73  SLKTLKRIIKIYEQMPEPKWVLAFGSCTVNGGIYWDSYNTITNLAEYIPVDITVSGCMPR 132

Query: 163 AEALIYGILLLQKKIR 178
            EA+I  +  L + I+
Sbjct: 133 PEAVIDALQTLMEMIQ 148


>gi|157164480|ref|YP_001466173.1| hydrogenase-4 component I [Campylobacter concisus 13826]
 gi|112801502|gb|EAT98846.1| hydrogenase-4 component I [Campylobacter concisus 13826]
          Length = 274

 Score =  180 bits (458), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 54/158 (34%), Positives = 92/158 (58%), Gaps = 1/158 (0%)

Query: 28  RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAP 86
           ++  +I     L   ++ L    R+ S+  +  G    C +E+  A  P +D ERFGF  
Sbjct: 5   QVPEDIKTANDLTAKLEHLKNIKRSFSVYRIDCGSCNGCEIEIFAAITPMWDPERFGFKL 64

Query: 87  RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGC 146
            A+PR +D+++ +G +T +M   L R Y+  P+P+ V++ G+C + GG +H +YSV  G 
Sbjct: 65  VANPRHADILLCSGPVTRQMYYPLLRAYEAAPDPKIVVAFGACGSTGGIFHDAYSVWGGI 124

Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           D+I+PVD+Y+PGCPP   ++IYG+ +    I +  + K
Sbjct: 125 DKIIPVDVYIPGCPPHPASVIYGLGMALGIIDQKLHKK 162


>gi|11499417|ref|NP_070656.1| F420H2:quinone oxidoreductase, 39.7 kDa subunit, putative
           [Archaeoglobus fulgidus DSM 4304]
 gi|2648716|gb|AAB89421.1| F420H2:quinone oxidoreductase, 39.7 kDa subunit, putative
           [Archaeoglobus fulgidus DSM 4304]
          Length = 353

 Score =  180 bits (458), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 57/133 (42%), Positives = 78/133 (58%), Gaps = 1/133 (0%)

Query: 46  LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNK 105
           +  W    SL  +    ACC  E+  A    YD ER G       RQ++++IV G +T K
Sbjct: 19  IKKWGTKWSLWPVHLVTACCGAELAHAFACGYDGERIGALNYGIARQTNLIIVEGAITRK 78

Query: 106 MASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEA 165
           MA  LR  ++QMP+P++VI MG+C   GG +   Y +V+  D +VPVD ++PGCPPT EA
Sbjct: 79  MAKVLRITWEQMPDPKFVIVMGACGLQGGIFWNGYHMVKPSD-VVPVDFFIPGCPPTPEA 137

Query: 166 LIYGILLLQKKIR 178
           L+ GI  LQ KI 
Sbjct: 138 LLRGIRQLQFKIE 150


>gi|118579068|ref|YP_900318.1| NADH-quinone oxidoreductase subunit B [Pelobacter propionicus DSM
           2379]
 gi|118580047|ref|YP_901297.1| NADH-quinone oxidoreductase subunit B [Pelobacter propionicus DSM
           2379]
 gi|118581593|ref|YP_902843.1| NADH-quinone oxidoreductase subunit B [Pelobacter propionicus DSM
           2379]
 gi|218528002|sp|A1ALP0|NUOB_PELPD RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|118501778|gb|ABK98260.1| NADH dehydrogenase subunit B [Pelobacter propionicus DSM 2379]
 gi|118502757|gb|ABK99239.1| NADH dehydrogenase subunit B [Pelobacter propionicus DSM 2379]
 gi|118504303|gb|ABL00786.1| NADH dehydrogenase subunit B [Pelobacter propionicus DSM 2379]
          Length = 163

 Score =  180 bits (458), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 68/141 (48%), Positives = 96/141 (68%), Gaps = 2/141 (1%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APRASPRQSDVM 96
           +L T  D+L+ W R  S+    F  ACC +E M  +   YD +RFG   PR +PRQSD++
Sbjct: 6   YLTTRKDELIGWVRKFSIFPYPFVTACCGMEFMAVASTLYDTDRFGAALPRFTPRQSDLL 65

Query: 97  IVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV 156
           +V GT+T+K A  ++RVYDQM +P++V++ G+CA  GG Y   Y+V++G DRI+PVDIY+
Sbjct: 66  MVVGTITHKEAPVIKRVYDQMCDPKWVMAFGACATSGGVYRN-YTVLQGVDRIIPVDIYI 124

Query: 157 PGCPPTAEALIYGILLLQKKI 177
           PGCPP  E +I  I+ LQ KI
Sbjct: 125 PGCPPRPEMVIDAIMKLQDKI 145


>gi|303248163|ref|ZP_07334427.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfovibrio
           fructosovorans JJ]
 gi|302490427|gb|EFL50336.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfovibrio
           fructosovorans JJ]
          Length = 147

 Score =  180 bits (458), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 50/139 (35%), Positives = 84/139 (60%), Gaps = 3/139 (2%)

Query: 43  VDQLVTWARTGSLMWMTF---GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVA 99
           +  ++   R  S   + F       C +E++    P YD+ERFG     +P+ +DV++V 
Sbjct: 2   LSNMINKGRIKSPWVVHFDCGSCNGCDIEVLACLTPLYDIERFGIVNVGNPKHADVLLVT 61

Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGC 159
           GT+  +    L+ +YDQMP P+ VI++G+C   GG +  +Y+VV G D+++PVD+YVPGC
Sbjct: 62  GTVNQRNKHVLKNIYDQMPGPKAVIAIGACGCTGGVFREAYNVVGGVDKVIPVDVYVPGC 121

Query: 160 PPTAEALIYGILLLQKKIR 178
           P   EA+I G++   +K++
Sbjct: 122 PARPEAIIDGVVAALEKVK 140


>gi|170289385|ref|YP_001739623.1| NADH-quinone oxidoreductase, B subunit [Thermotoga sp. RQ2]
 gi|170176888|gb|ACB09940.1| NADH-quinone oxidoreductase, B subunit [Thermotoga sp. RQ2]
          Length = 178

 Score =  180 bits (457), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 54/147 (36%), Positives = 83/147 (56%), Gaps = 4/147 (2%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           +  +       D L    R+ S+  + +   C AVE+  +   R+D+ERFG AP A+PRQ
Sbjct: 1   MKERSIWERIADNL----RSRSIWMLHYCTGCGAVELPPSMTSRFDMERFGIAPMATPRQ 56

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           +D++++ G L  K    +   Y+QMP+P+YV+  GSC   GG Y  SY+ V   D  +PV
Sbjct: 57  ADILLITGYLNTKTLRRVIYTYEQMPDPKYVVGFGSCTINGGIYFDSYATVNRLDYYIPV 116

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179
           D+Y+ GC P  EA++     L +KIR+
Sbjct: 117 DVYIAGCMPRPEAILEAFNYLMEKIRK 143


>gi|15643970|ref|NP_229019.1| NADH dehydrogenase subunit B [Thermotoga maritima MSB8]
 gi|4981767|gb|AAD36289.1|AE001778_10 NADH dehydrogenase, putative [Thermotoga maritima MSB8]
          Length = 178

 Score =  180 bits (457), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 54/147 (36%), Positives = 83/147 (56%), Gaps = 4/147 (2%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           +  +       D L    R+ S+  + +   C AVE+  +   R+D+ERFG AP A+PRQ
Sbjct: 1   MKERSIWERIADNL----RSRSIWMLHYCTGCGAVELPPSMTSRFDMERFGIAPMATPRQ 56

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           +D++++ G L  K    +   Y+QMP+P+YV+  GSC   GG Y  SY+ V   D  +PV
Sbjct: 57  ADILLITGYLNTKTLRRVIYTYEQMPDPKYVVGFGSCTINGGIYFDSYATVNRLDYYIPV 116

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179
           D+Y+ GC P  EA++     L +KIR+
Sbjct: 117 DVYIAGCMPRPEAILEAFNYLMEKIRK 143


>gi|322419366|ref|YP_004198589.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Geobacter sp. M18]
 gi|320125753|gb|ADW13313.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Geobacter sp. M18]
          Length = 164

 Score =  180 bits (456), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 56/143 (39%), Positives = 86/143 (60%), Gaps = 3/143 (2%)

Query: 43  VDQLVTWARTGSLMWMTF---GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVA 99
           + +LV  +R  S   +         C +E++    P YD+ERFG     +P+ +DV++V 
Sbjct: 2   LKKLVKTSRVKSPWLIHLDCSSCNGCDIEVLACLTPLYDVERFGILNVGNPKHADVLVVT 61

Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGC 159
           GT+ ++    L  +YDQMPEP+ V+++G+C   GG +  S++VV G DR+VPVD YVPGC
Sbjct: 62  GTVNHRNRKVLENIYDQMPEPKVVVAVGACGCSGGVFRDSFNVVGGVDRVVPVDAYVPGC 121

Query: 160 PPTAEALIYGILLLQKKIRRVGN 182
            P  EA+I GI+L  +K+   G 
Sbjct: 122 APKPEAIIDGIVLALEKLAEKGK 144


>gi|118579032|ref|YP_900282.1| NADH-quinone oxidoreductase subunit B [Pelobacter propionicus DSM
           2379]
 gi|118501742|gb|ABK98224.1| ech hydrogenase subunit C [Pelobacter propionicus DSM 2379]
          Length = 164

 Score =  179 bits (455), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 51/148 (34%), Positives = 89/148 (60%), Gaps = 3/148 (2%)

Query: 40  VTSVDQLVTWARTGSLMWMTF---GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVM 96
           +  +D++V WAR  S   + +       C +E++    P +D+ERFG   + +PR +DV+
Sbjct: 1   MKIIDRIVNWARIKSPWVIHYNTGACNGCDIEIVATLTPVFDIERFGCQLKGTPRHADVL 60

Query: 97  IVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV 156
           + +G +T +    + R+Y+QMPEP++V+++GSCA  GG +   Y+++ G D ++PV  YV
Sbjct: 61  LCSGPVTRQSRDRIIRIYEQMPEPKFVVAVGSCACSGGVFQGCYNILGGIDSVIPVSAYV 120

Query: 157 PGCPPTAEALIYGILLLQKKIRRVGNVK 184
           PGC    EA+I G++ L   + R   V+
Sbjct: 121 PGCAARPEAIIDGVVKLLTTLERKKAVE 148


>gi|332157678|ref|YP_004422957.1| NADH dehydrogenase subunit B [Pyrococcus sp. NA2]
 gi|331033141|gb|AEC50953.1| NADH dehydrogenase subunit B [Pyrococcus sp. NA2]
          Length = 192

 Score =  178 bits (453), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 52/136 (38%), Positives = 77/136 (56%)

Query: 43  VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL 102
            + L  WAR  SL  + F   C  +EM      RYD+ERFG  P  SPRQ D+ ++ G +
Sbjct: 7   FEPLFNWARKKSLWIVAFCTGCGGIEMPPLMTARYDIERFGIMPDPSPRQYDLFLITGYV 66

Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162
           T K    +   Y+  P+P+YV++ GSC   GG Y  SY+ ++  D+ +PVD+++ GC P 
Sbjct: 67  TPKTLKRIIITYELSPDPKYVLAHGSCPLNGGIYWDSYNAIKHLDKYIPVDVFIAGCMPR 126

Query: 163 AEALIYGILLLQKKIR 178
            EA++ GI  L + I 
Sbjct: 127 PEAVMDGIYKLMEMIE 142


>gi|302824537|ref|XP_002993911.1| hypothetical protein SELMODRAFT_4550 [Selaginella moellendorffii]
 gi|302824543|ref|XP_002993914.1| hypothetical protein SELMODRAFT_4549 [Selaginella moellendorffii]
 gi|300138278|gb|EFJ05052.1| hypothetical protein SELMODRAFT_4550 [Selaginella moellendorffii]
 gi|300138281|gb|EFJ05055.1| hypothetical protein SELMODRAFT_4549 [Selaginella moellendorffii]
          Length = 209

 Score =  178 bits (453), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 70/181 (38%), Positives = 100/181 (55%), Gaps = 12/181 (6%)

Query: 1   MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTF 60
           +G  TVN  +++     S ++   D             + T+++    WAR  S   + +
Sbjct: 14  IGNNTVNDLMVNPMGRPSGDRATPD-----------SIVPTTLNDSTNWARLSSSRPLPY 62

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           G +CC++E       R D +R G  PR+SPRQ+D+ I AGT T KMA +L R Y+QMPEP
Sbjct: 63  GTSCCSIEFAPLIGSRSDSDRHGSVPRSSPRQADLTITAGTATMKMAPSLVRSYEQMPEP 122

Query: 121 RYVISMGSCANGGGYYH-YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           +Y I+MG+    GG      +S VRG D+ +P DIY PGCPP  EALI  I+  +KK+ R
Sbjct: 123 KYAIAMGARTVTGGMLSTDPHSTVRGVDKSIPADIYPPGCPPKPEALIDAIIKPRKKVSR 182

Query: 180 V 180
            
Sbjct: 183 E 183


>gi|150021104|ref|YP_001306458.1| NADH dehydrogenase subunit B [Thermosipho melanesiensis BI429]
 gi|149793625|gb|ABR31073.1| NADH-quinone oxidoreductase, B subunit [Thermosipho melanesiensis
           BI429]
          Length = 180

 Score =  178 bits (453), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 55/146 (37%), Positives = 80/146 (54%), Gaps = 4/146 (2%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           I  +       D+L    R+ SL  + +   C AVE+      R+D+ERFG  P A+PRQ
Sbjct: 3   INERNLWEKIADKL----RSKSLWMLHYCTGCGAVELPPTMTSRFDMERFGMGPMATPRQ 58

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           +D++ + G L+ K    +   Y+QM EP+YVI  GSC   GG Y+ SY+ +   D  +PV
Sbjct: 59  ADILFITGYLSAKTLRRVIYTYEQMAEPKYVIGFGSCTLNGGIYYDSYATINKLDYYIPV 118

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIR 178
           D+Y+ GC P  EAL+     L + IR
Sbjct: 119 DLYIAGCMPRPEALLEAFNKLMRMIR 144


>gi|67528182|ref|XP_661901.1| hypothetical protein AN4297.2 [Aspergillus nidulans FGSC A4]
 gi|40740847|gb|EAA60037.1| hypothetical protein AN4297.2 [Aspergillus nidulans FGSC A4]
          Length = 184

 Score =  178 bits (453), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 86/108 (79%), Positives = 95/108 (87%)

Query: 77  YDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY 136
           YD +R G   RASPRQSDVMIVAGTLTNKMA ALR+VYDQMP+PR+VISMGSCANGGGYY
Sbjct: 72  YDQDRLGIIFRASPRQSDVMIVAGTLTNKMAPALRQVYDQMPDPRWVISMGSCANGGGYY 131

Query: 137 HYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           HYSYSVVRGCDRIVPVD+YVPGCPPT+EAL+YGI  LQKK+R     +
Sbjct: 132 HYSYSVVRGCDRIVPVDVYVPGCPPTSEALMYGIFQLQKKMRHTRITR 179


>gi|327310885|ref|YP_004337782.1| NADH-quinone oxidoreductase subunits B and D [Thermoproteus
           uzoniensis 768-20]
 gi|326947364|gb|AEA12470.1| NADH-quinone oxidoreductase subunits B and D [Thermoproteus
           uzoniensis 768-20]
          Length = 561

 Score =  178 bits (453), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 58/129 (44%), Positives = 81/129 (62%), Gaps = 1/129 (0%)

Query: 49  WARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108
           W    SL       ACC VE+  A  P YD ER G  P  S R S+++I+ GT+T KMA 
Sbjct: 16  WGTKWSLWPPHLVTACCGVELAHAFGPAYDAERLGVLPMPSARHSNLLIIEGTITLKMAK 75

Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168
            ++ VY+QMPEP+YV++MG+CA  GG ++ SY +V     +V VD+YV GCPPT EAL+ 
Sbjct: 76  FVKWVYEQMPEPKYVVAMGACAIKGGVFYGSYHMV-PASNVVGVDVYVSGCPPTPEALLK 134

Query: 169 GILLLQKKI 177
            +  +Q+ +
Sbjct: 135 AVEKVQENV 143


>gi|18977816|ref|NP_579173.1| NADH dehydrogenase subunit B [Pyrococcus furiosus DSM 3638]
 gi|18893567|gb|AAL81568.1| NADH dehydrogenase subunit [Pyrococcus furiosus DSM 3638]
          Length = 192

 Score =  178 bits (452), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 53/136 (38%), Positives = 77/136 (56%)

Query: 43  VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL 102
            + L  WAR  SL  + F   C  +EM      RYDLERFG  P  SPRQ D+ ++ G +
Sbjct: 7   FEPLFNWARKKSLWIVAFCTGCGGIEMPPLMTARYDLERFGIMPDPSPRQYDLFLITGYV 66

Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162
           T K    +   Y+  P+P+YV++ GSC   GG Y  +Y+ ++  D+ +PVD+Y+ GC P 
Sbjct: 67  TPKTLKRIIITYEMAPDPKYVLAHGSCPINGGIYWDAYNAIKQLDKYIPVDVYIAGCMPR 126

Query: 163 AEALIYGILLLQKKIR 178
            EA++ GI  L + I 
Sbjct: 127 PEAVMDGIKKLMEMIE 142


>gi|255961309|ref|YP_003097491.1| NADH dehydrogenase subunit K [Selaginella moellendorffii]
 gi|254941481|gb|ACT88996.1| NADH dehydrogenase subunit K [Selaginella moellendorffii]
          Length = 213

 Score =  178 bits (452), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 70/181 (38%), Positives = 100/181 (55%), Gaps = 12/181 (6%)

Query: 1   MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTF 60
           +G  TVN  +++     S ++   D             + T+++    WAR  S   + +
Sbjct: 14  IGNNTVNDLMVNPMGRPSGDRATPD-----------SIVPTTLNDSTNWARLSSSRPLPY 62

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           G +CC++E       R D +R G  PR+SPRQ+D+ I AGT T KMA +L R Y+QMPEP
Sbjct: 63  GTSCCSIEFAPLIGSRSDSDRHGSVPRSSPRQADLTITAGTATMKMAPSLVRSYEQMPEP 122

Query: 121 RYVISMGSCANGGGYYH-YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           +Y I+MG+    GG      +S VRG D+ +P DIY PGCPP  EALI  I+  +KK+ R
Sbjct: 123 KYAIAMGARTVTGGMLSTDPHSTVRGVDKSIPADIYPPGCPPKPEALIDAIIKPRKKVSR 182

Query: 180 V 180
            
Sbjct: 183 E 183


>gi|296399240|gb|ADH10415.1| NADH-plastoquinone oxidoreductase subunit K [Selaginella
           moellendorffii]
          Length = 212

 Score =  178 bits (451), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 70/181 (38%), Positives = 100/181 (55%), Gaps = 12/181 (6%)

Query: 1   MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTF 60
           +G  TVN  +++     S ++   D             + T+++    WAR  S   + +
Sbjct: 14  IGNNTVNDLMVNPMGRPSGDRATPD-----------SIVPTTLNDSTNWARLSSSRPLPY 62

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           G +CC++E       R D +R G  PR+SPRQ+D+ I AGT T KMA +L R Y+QMPEP
Sbjct: 63  GTSCCSIEFAPLIGSRSDSDRHGSVPRSSPRQADLTITAGTATMKMAPSLVRSYEQMPEP 122

Query: 121 RYVISMGSCANGGGYYH-YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           +Y I+MG+    GG      +S VRG D+ +P DIY PGCPP  EALI  I+  +KK+ R
Sbjct: 123 KYAIAMGARTVTGGMLSTDPHSTVRGVDKSIPADIYPPGCPPKPEALIDAIIKPRKKVSR 182

Query: 180 V 180
            
Sbjct: 183 E 183


>gi|255322773|ref|ZP_05363915.1| NADH ubiquinone oxidoreductase, 20 Kd subunit [Campylobacter showae
           RM3277]
 gi|255300115|gb|EET79390.1| NADH ubiquinone oxidoreductase, 20 Kd subunit [Campylobacter showae
           RM3277]
          Length = 276

 Score =  178 bits (451), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 52/153 (33%), Positives = 89/153 (58%), Gaps = 1/153 (0%)

Query: 28  RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAP 86
           ++   I     L   ++ L    R+ S+  +  G    C +E+  A  P +D ERFGF  
Sbjct: 5   QVPENIKTANDLTAKLEHLKNIKRSFSVYRIDCGSCNGCEIEIFAAITPMWDPERFGFKL 64

Query: 87  RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGC 146
            A+PR +D+++ +G +T +M   L R Y+  P+P+ V++ G+C + GG ++ +YSV  G 
Sbjct: 65  VANPRHADILVCSGPVTRQMYYPLLRAYEAAPDPKIVVAFGACGSTGGIFYDAYSVWGGI 124

Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           D+I+PVD+Y+PGCPP   ++IYG+ +    I +
Sbjct: 125 DKIIPVDVYIPGCPPHPASVIYGLGMALGIIDQ 157


>gi|149194128|ref|ZP_01871226.1| HYDROGENASE-Ni,Fe-hydrogenase III small subunit [Caminibacter
           mediatlanticus TB-2]
 gi|149136081|gb|EDM24559.1| HYDROGENASE-Ni,Fe-hydrogenase III small subunit [Caminibacter
           mediatlanticus TB-2]
          Length = 280

 Score =  178 bits (451), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 56/158 (35%), Positives = 89/158 (56%), Gaps = 5/158 (3%)

Query: 29  ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPR 87
           +  +I     L   +  L    R+ S+  +  G    C +E+  A  P +D ERFGF   
Sbjct: 9   LDKDIFDNNSLEDKLRLLKDIKRSFSVFRVDCGSCNGCEIEIFAAITPMWDPERFGFKLV 68

Query: 88  ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCD 147
           ASPR +D+++  G LT +M   L R Y+  P+P+ VI++G+C   GG +H SY+V  G D
Sbjct: 69  ASPRHADILLCTGPLTRQMYYPLLRAYEATPDPKVVIAVGACGCTGGIFHDSYAVWSGID 128

Query: 148 RIVPVDIYVPGCPPTAEALIYGIL----LLQKKIRRVG 181
             +PVD+Y+PGCPP    +I+G+     +L +K+++V 
Sbjct: 129 STLPVDVYIPGCPPHPATIIHGLAVALGILDQKMKKVE 166


>gi|240102769|ref|YP_002959078.1| NADH dehydrogenase subunit B [Thermococcus gammatolerans EJ3]
 gi|239910323|gb|ACS33214.1| membrane bound oxidoreductase, MbxJ subunit (MbxJ) [Thermococcus
           gammatolerans EJ3]
          Length = 194

 Score =  177 bits (450), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 51/136 (37%), Positives = 79/136 (58%)

Query: 43  VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL 102
            + L  WAR  SL  + F   C  +EM   +  RYD ERFG  P  +PR +D+ ++ G +
Sbjct: 18  FEPLFRWARKKSLWIVAFCTGCGGIEMPPLATARYDFERFGIMPNPAPRMADLFLITGYV 77

Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162
           T K    +   Y+ M +P+YV++ GSC   GG Y  SY+VV+  D+ +P+D+ + GC P 
Sbjct: 78  TPKTLKRIIITYEMMQDPKYVLAHGSCPINGGVYWDSYNVVKQLDKYIPIDVAIAGCMPR 137

Query: 163 AEALIYGILLLQKKIR 178
            EA++ GI+ + +KI 
Sbjct: 138 PEAVMDGIMEIMRKIE 153


>gi|237809381|ref|YP_002893821.1| NADH dehydrogenase subunit B [Tolumonas auensis DSM 9187]
 gi|259514690|sp|C4LB32|NUOB_TOLAT RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
           Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
           subunit B
 gi|237501642|gb|ACQ94235.1| NADH-quinone oxidoreductase, B subunit [Tolumonas auensis DSM 9187]
          Length = 223

 Score =  177 bits (450), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 67/159 (42%), Positives = 99/159 (62%), Gaps = 9/159 (5%)

Query: 14  QSSCSLEKVDADFSRISSEITH---KGFLVTSVDQL----VTWARTGSLMWMTFGLACCA 66
             +  +E+  A+  +  ++      +G L+  ++ +    V W R  SL    FG++CC 
Sbjct: 9   DPNAPIERYPAEKKQTVNDPLQEVGRGILLGKLENVLNSTVNWGRKNSLWPYNFGISCCY 68

Query: 67  VEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVIS 125
           VEM  A    +D+ RFG    RASPRQ+D M++AGT   KMA  ++R+Y+Q+ EP++VIS
Sbjct: 69  VEMTTAFTAVHDVARFGAEVIRASPRQADFMVIAGTPFIKMAPVIQRLYEQLLEPKWVIS 128

Query: 126 MGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164
           MG+CAN GG Y   YSVV+G D+ +PVD+Y+PGCPP  E
Sbjct: 129 MGACANSGGMY-DIYSVVQGVDKFLPVDVYIPGCPPRPE 166


>gi|303247493|ref|ZP_07333765.1| NADH-quinone oxidoreductase, B subunit [Desulfovibrio
           fructosovorans JJ]
 gi|302491189|gb|EFL51081.1| NADH-quinone oxidoreductase, B subunit [Desulfovibrio
           fructosovorans JJ]
          Length = 178

 Score =  177 bits (450), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 68/143 (47%), Positives = 100/143 (69%), Gaps = 3/143 (2%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQSDVM 96
               +V ++V   R  S+  MTFG+ACCA+EMM   M R+D+ RFG    R SPRQSD+M
Sbjct: 22  VATPAVQKIVDVCRAMSIWPMTFGIACCAIEMMAVGMARFDIARFGAEVFRPSPRQSDLM 81

Query: 97  IVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH--YSYSVVRGCDRIVPVDI 154
           IVAGT+  K+A  + R+++QMP PR+V+++G+CA  GG ++    Y+VV+G D ++PVD+
Sbjct: 82  IVAGTVNKKLAPLVVRLFEQMPAPRFVMALGNCAISGGPFNIEGQYNVVQGVDTLIPVDV 141

Query: 155 YVPGCPPTAEALIYGILLLQKKI 177
           YVPGCPP  E L+ G+  +Q+K+
Sbjct: 142 YVPGCPPRPEGLLEGLFAIQQKM 164


>gi|257460517|ref|ZP_05625618.1| formate hydrogenlyase subunit 7 [Campylobacter gracilis RM3268]
 gi|257441848|gb|EEV16990.1| formate hydrogenlyase subunit 7 [Campylobacter gracilis RM3268]
          Length = 274

 Score =  177 bits (449), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 55/158 (34%), Positives = 90/158 (56%), Gaps = 9/158 (5%)

Query: 28  RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAP 86
           ++   I +   L   ++ L    R+ S+  +  G    C +E+  +  P +D ERFGF  
Sbjct: 5   QVPENIKNANDLTAKLELLKNIKRSFSVYRIDCGSCNGCEIEIFASITPMWDPERFGFKL 64

Query: 87  RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGC 146
            A+PR +D+++  G +T +M   L R Y+  P+P+ V+++ +C + GG +H +YSV  G 
Sbjct: 65  VANPRHADILVCTGPVTRQMYYPLLRAYEAAPDPKIVVALRACGSTGGIFHDAYSVWSGI 124

Query: 147 DRIVPVDIYVPGCPPTAEALIYGI--------LLLQKK 176
           D+IVPVD+Y+PGCPP   ++IYG+          LQKK
Sbjct: 125 DKIVPVDVYIPGCPPHPASIIYGLGMALGIIDQKLQKK 162


>gi|57641152|ref|YP_183630.1| NADH dehydrogenase subunit B [Thermococcus kodakarensis KOD1]
 gi|57159476|dbj|BAD85406.1| membrane bound hydrogenase, NiFe-hydrogenase small subunit
           [Thermococcus kodakarensis KOD1]
          Length = 193

 Score =  177 bits (449), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 51/136 (37%), Positives = 79/136 (58%)

Query: 43  VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL 102
            + L  WAR  SL  + F   C  +EM   +  RYD ERFG  P  +PR +D+ ++ G +
Sbjct: 17  FEPLFRWARKKSLWIVAFCTGCGGIEMPPLATARYDFERFGIMPNPAPRMADLFLITGYV 76

Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162
           T K    +   Y+ M +P+YV++ GSC   GG Y  SY+VV+  D+ +P+D+ + GC P 
Sbjct: 77  TPKTLKRIIITYEMMQDPKYVLAHGSCPINGGVYWDSYNVVKQLDKYIPIDVAIAGCMPR 136

Query: 163 AEALIYGILLLQKKIR 178
            EA++ GI+ + +KI 
Sbjct: 137 PEAVMDGIMEIMRKIE 152


>gi|242280696|ref|YP_002992825.1| NADH dehydrogenase (quinone) [Desulfovibrio salexigens DSM 2638]
 gi|242123590|gb|ACS81286.1| NADH dehydrogenase (quinone) [Desulfovibrio salexigens DSM 2638]
          Length = 144

 Score =  177 bits (449), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 52/137 (37%), Positives = 83/137 (60%), Gaps = 3/137 (2%)

Query: 43  VDQLVTWARTGSLMWMTF---GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVA 99
             + +  +R  S   M F       C +E++    P YD+ERFG     +P+ +DV++V 
Sbjct: 2   FKKFIGNSRAKSPWIMHFDCGSCNGCDIEVLACLTPLYDVERFGVVNVGNPKHADVLLVT 61

Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGC 159
           GT+ ++ A  LR +YDQMP+P+ VI++G+C   GG +   Y+V+ G D+++PVD+YVPGC
Sbjct: 62  GTVNHRNAKVLRNIYDQMPDPKGVIAIGACGLSGGVFRECYNVLGGVDKVIPVDVYVPGC 121

Query: 160 PPTAEALIYGILLLQKK 176
           P   EA+I G++    K
Sbjct: 122 PAKPEAIIDGVVAALAK 138


>gi|268680487|ref|YP_003304918.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Sulfurospirillum
           deleyianum DSM 6946]
 gi|268618518|gb|ACZ12883.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Sulfurospirillum
           deleyianum DSM 6946]
          Length = 274

 Score =  177 bits (449), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 52/144 (36%), Positives = 87/144 (60%), Gaps = 1/144 (0%)

Query: 28  RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAP 86
            + S+I     L   ++ L    R+ S+  +  G    C +E+  A  P +D ERFGF  
Sbjct: 5   EVPSDIALANSLEEKLELLKHIGRSFSVFRIDCGSCNGCEIEIFAAITPLWDPERFGFKL 64

Query: 87  RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGC 146
            A+PR +D+++  G +T +M   L R Y+  P+P+ V+++G+C   GG ++ +YSV+ G 
Sbjct: 65  VANPRHADILLCTGPVTRQMYYPLLRAYEATPDPKIVVALGACGATGGIFYDAYSVLSGI 124

Query: 147 DRIVPVDIYVPGCPPTAEALIYGI 170
           D+I+PVD+Y+PGCPP   ++IYG+
Sbjct: 125 DKIIPVDVYIPGCPPHPASIIYGL 148


>gi|317486369|ref|ZP_07945197.1| NADH ubiquinone oxidoreductase [Bilophila wadsworthia 3_1_6]
 gi|316922358|gb|EFV43616.1| NADH ubiquinone oxidoreductase [Bilophila wadsworthia 3_1_6]
          Length = 163

 Score =  177 bits (449), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 50/140 (35%), Positives = 83/140 (59%), Gaps = 3/140 (2%)

Query: 42  SVDQLVTWARTGSLMWMTF---GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIV 98
            ++Q +   R  S   + +       C +E++    P +D+ERFG      P+ +DV++V
Sbjct: 9   KLNQYINKGRLKSPWVVHYDCGSCNGCDIEVLACLTPVFDVERFGIVNIGDPKHADVLLV 68

Query: 99  AGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPG 158
            GT+  +    L+ +YDQMPEP+ VI++G+CA  GG +   Y+VV G D ++PVD+YVPG
Sbjct: 69  TGTVNQRNKDVLKNLYDQMPEPKAVIAIGACACTGGVFQDCYNVVGGVDHVIPVDVYVPG 128

Query: 159 CPPTAEALIYGILLLQKKIR 178
           C    EA+I G++L  + ++
Sbjct: 129 CAAKPEAIIDGVVLALEVVK 148


>gi|52549748|gb|AAU83597.1| F420H2-quinone oxidoreductase 45 kD subunit [uncultured archaeon
           GZfos32E4]
          Length = 788

 Score =  177 bits (448), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 61/151 (40%), Positives = 86/151 (56%), Gaps = 5/151 (3%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           I H G        L  WA   SL    F  +CC VE+       YD+ER G       RQ
Sbjct: 12  ILHSGVFT----PLRRWATKWSLWPCHFLTSCCGVELAHTGACGYDMERLGTLNMGISRQ 67

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           ++ ++V GT+T KMA ALR V++QMP+P++V  +G+C   GG +  SY++ R  D IVPV
Sbjct: 68  ANFIMVEGTITRKMARALRIVWEQMPDPKFVNVIGTCGQRGGIFWNSYNITRPSD-IVPV 126

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           D ++PGCP T E+L+ G+  +Q+KI    N 
Sbjct: 127 DFFIPGCPITPESLLRGVRAVQEKIEGRDNT 157


>gi|52548540|gb|AAU82389.1| F420H2-quinone oxidoreductase 45 kD subunit [uncultured archaeon
           GZfos17C7]
          Length = 788

 Score =  177 bits (448), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 61/151 (40%), Positives = 86/151 (56%), Gaps = 5/151 (3%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           I H G        L  WA   SL    F  +CC VE+       YD+ER G       RQ
Sbjct: 12  ILHSGVFT----PLRRWATKWSLWPCHFLTSCCGVELAHTGACGYDMERLGTLNMGISRQ 67

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           ++ ++V GT+T KMA ALR V++QMP+P++V  +G+C   GG +  SY++ R  D IVPV
Sbjct: 68  ANFIMVEGTITRKMARALRIVWEQMPDPKFVNVIGTCGQRGGIFWNSYNITRPSD-IVPV 126

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           D ++PGCP T E+L+ G+  +Q+KI    N 
Sbjct: 127 DFFIPGCPITPESLLRGVRAVQEKIEGRDNT 157


>gi|57642024|ref|YP_184502.1| membrane bound hydrogenase, NiFe-hydrogenase small subunit
           [Thermococcus kodakarensis KOD1]
 gi|57160348|dbj|BAD86278.1| membrane bound hydrogenase, NiFe-hydrogenase small subunit
           [Thermococcus kodakarensis KOD1]
          Length = 176

 Score =  177 bits (448), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 56/162 (34%), Positives = 92/162 (56%), Gaps = 4/162 (2%)

Query: 22  VDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMT---FGLACCAVEMMQASMPRYD 78
           V A+ +   S  + +  L   + QL  +    S             C +E++ A  PRYD
Sbjct: 5   VPANQNGQKSNPSERERLEKRIAQLCRFLGK-SPWVFHVNSGSCNGCDIEIIAALTPRYD 63

Query: 79  LERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY 138
            ERFG     SPR +D+++V G +TN+    ++ VY+Q P+P+ VI++G+C  GG  ++ 
Sbjct: 64  AERFGVKLVGSPRHADILVVTGPVTNQSLERVKLVYEQTPDPKIVIAVGACPTGGSVFYE 123

Query: 139 SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           S       DR++PVD+YVPGCPP  EA+++G++L  +K+ R+
Sbjct: 124 SPFTNAPLDRVIPVDVYVPGCPPRPEAILHGVVLALEKLARM 165


>gi|14591239|ref|NP_143316.1| NADH dehydrogenase subunit B [Pyrococcus horikoshii OT3]
 gi|3257873|dbj|BAA30556.1| 195aa long hypothetical NADH-ubiquinone oxidoreductase subunit
           [Pyrococcus horikoshii OT3]
          Length = 195

 Score =  177 bits (448), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 52/136 (38%), Positives = 75/136 (55%)

Query: 43  VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL 102
            + L  WAR  SL  + F   C  +EM      RYD+ERFG     SPRQ D+ ++ G +
Sbjct: 10  FEPLFNWARKKSLWIVAFCTGCGGIEMPPLMTARYDIERFGMLSDPSPRQYDLFLITGYV 69

Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162
           T K    +   Y+  P+P+YV++ GSC   GG Y  SY+ V+  D+ +PVD+++ GC P 
Sbjct: 70  TPKTLKRIIITYELSPDPKYVLAHGSCPINGGVYWDSYNTVKHLDKYIPVDVFIAGCMPR 129

Query: 163 AEALIYGILLLQKKIR 178
            EA++ GI  L   I 
Sbjct: 130 PEAVMDGIYKLMDMIE 145


>gi|46578848|ref|YP_009656.1| ech hydrogenase subunit EchC [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120603546|ref|YP_967946.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Desulfovibrio
           vulgaris DP4]
 gi|46448260|gb|AAS94915.1| Ech hydrogenase, subunit EchC, putative [Desulfovibrio vulgaris
           str. Hildenborough]
 gi|120563775|gb|ABM29519.1| ech hydrogenase subunit C [Desulfovibrio vulgaris DP4]
 gi|311232712|gb|ADP85566.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfovibrio
           vulgaris RCH1]
          Length = 157

 Score =  177 bits (448), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 48/139 (34%), Positives = 84/139 (60%), Gaps = 3/139 (2%)

Query: 43  VDQLVTWARTGSLMWMTF---GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVA 99
           +   +   R  S   + F       C +E++    P +D+ERFG     +P+ +DV++V 
Sbjct: 4   IKDWINKGRLKSPWVVHFDCGSCNGCDIEVLACLTPVFDVERFGIINVGNPKHADVLLVT 63

Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGC 159
           GT+ ++    L+ +YDQMP+P+ VI++G+C + GG +   Y+VV G D+++PVD+YVPGC
Sbjct: 64  GTVNHRNKKVLKNIYDQMPDPKAVIAIGACGSSGGVFRECYNVVGGVDQVIPVDVYVPGC 123

Query: 160 PPTAEALIYGILLLQKKIR 178
           P   EA+I G++   + ++
Sbjct: 124 PAKPEAIIDGVVTALEVVK 142


>gi|14591227|ref|NP_143304.1| NADH-ubiquinone oxidoreductase subunit [Pyrococcus horikoshii OT3]
 gi|3257858|dbj|BAA30541.1| 173aa long hypothetical NADH-ubiquinone oxidoreductase subunit
           [Pyrococcus horikoshii OT3]
          Length = 173

 Score =  176 bits (447), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 53/154 (34%), Positives = 88/154 (57%), Gaps = 4/154 (2%)

Query: 30  SSEITHKGFLVTSVDQLVTWARTGSLMWMT---FGLACCAVEMMQASMPRYDLERFGFAP 86
           + +   +  L   + QL  +    S             C +E++ A  PRYD ERFG   
Sbjct: 9   AQQNEERKRLEKRIAQLCKFIGK-SPWVFHVNSGSCNGCDIEIIAALTPRYDAERFGVKL 67

Query: 87  RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGC 146
             SPR +D+++V G +TN+    ++ VY+Q P+P+ VI++GSCA GG  ++ S       
Sbjct: 68  VGSPRHADILLVTGPVTNQSLERVKLVYEQTPDPKIVIAVGSCATGGSVFYESPFTNAPL 127

Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           D ++PVD++VPGCPP  EA++YG++L  +K+ ++
Sbjct: 128 DNVIPVDVFVPGCPPRPEAILYGVVLALEKLAKM 161


>gi|145591231|ref|YP_001153233.1| NADH-quinone oxidoreductase, B subunit [Pyrobaculum arsenaticum DSM
           13514]
 gi|145282999|gb|ABP50581.1| NADH-quinone oxidoreductase, B subunit [Pyrobaculum arsenaticum DSM
           13514]
          Length = 196

 Score =  176 bits (447), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 57/157 (36%), Positives = 92/157 (58%), Gaps = 1/157 (0%)

Query: 22  VDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLER 81
           +D   + +S  +         ++++  W    SL  +    +CC VE+   S P +D ER
Sbjct: 1   MDKPTTSMSQALREFLLKKAKLEKIFNWGVRWSLWPVHLVTSCCGVEVAHTSGPGFDAER 60

Query: 82  FGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYS 141
           +G  P  + RQS+V++V GT+T KMA  L+ VY+QMPEP++V++MG+CA  GG +  SY 
Sbjct: 61  WGVLPFHTMRQSNVILVEGTITRKMAKVLKMVYEQMPEPKFVLAMGACAVRGGLFWNSYH 120

Query: 142 VVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           VV+    +    +Y+ GCPPT EA++   ++L  KI+
Sbjct: 121 VVQVDTVVPVD-VYIAGCPPTPEAVVRAFIMLHNKIK 156


>gi|317154076|ref|YP_004122124.1| NADH dehydrogenase (quinone) [Desulfovibrio aespoeensis Aspo-2]
 gi|316944327|gb|ADU63378.1| NADH dehydrogenase (quinone) [Desulfovibrio aespoeensis Aspo-2]
          Length = 147

 Score =  176 bits (447), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 52/129 (40%), Positives = 82/129 (63%), Gaps = 3/129 (2%)

Query: 46  LVTWARTGSLMWMTF---GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL 102
            +  +R  S   M F       C +E++    P YD+ERFG     +P+ +DV++V GT+
Sbjct: 5   FIKKSRAKSPWIMHFDCGSCNGCDIEVLACLTPLYDVERFGIINVGNPKHADVLLVTGTV 64

Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162
            ++    L+ +YDQMPEP+ VI++G+C N GG +  +Y+VV G D+++PVD+YVPGCP  
Sbjct: 65  NHRNKKVLKNIYDQMPEPKAVIAIGACGNTGGVFRDAYNVVGGVDKVIPVDVYVPGCPAK 124

Query: 163 AEALIYGIL 171
            EA+I G++
Sbjct: 125 PEAIIDGVV 133


>gi|254171859|ref|ZP_04878535.1| NADH dehydrogenase beta subunit [Thermococcus sp. AM4]
 gi|214033755|gb|EEB74581.1| NADH dehydrogenase beta subunit [Thermococcus sp. AM4]
          Length = 194

 Score =  176 bits (447), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 52/136 (38%), Positives = 78/136 (57%)

Query: 43  VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL 102
            + L  WAR  SL  + F   C  +EM      RYDLERFG  P  +PR +D+ ++ G +
Sbjct: 18  FEPLFRWARKKSLWIVAFCTGCGGIEMPPLFTARYDLERFGMMPNPAPRMADLFLITGYV 77

Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162
           T K    +   Y+ M +P+YV++ GSC   GG Y  SY+VV+  D+ +P+D+ + GC P 
Sbjct: 78  TPKTLKRIIITYEMMQDPKYVLAHGSCPINGGVYWDSYNVVKQLDKYIPIDVAIAGCMPR 137

Query: 163 AEALIYGILLLQKKIR 178
            EA++ GI  + +KI 
Sbjct: 138 PEAVMDGIREIMRKIE 153


>gi|307595389|ref|YP_003901706.1| NADH-quinone oxidoreductase subunit B [Vulcanisaeta distributa DSM
           14429]
 gi|307550590|gb|ADN50655.1| NADH-quinone oxidoreductase, B subunit [Vulcanisaeta distributa DSM
           14429]
          Length = 420

 Score =  176 bits (447), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 62/140 (44%), Positives = 87/140 (62%), Gaps = 1/140 (0%)

Query: 39  LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIV 98
           L  +++    W    SL  +    ACC VEM     P YD ER G  P  +PRQ+++++V
Sbjct: 3   LDKALEPYKKWGTKYSLWPVHLVTACCGVEMAHTWNPTYDAERLGSLPWHAPRQTNLILV 62

Query: 99  AGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPG 158
            GT+T KMA  LR V++QM +P+YVI+MGSCA  GG +  SY  V   ++I+P+D Y  G
Sbjct: 63  EGTITFKMARVLRYVWEQMSDPKYVIAMGSCAAEGGIFWNSYHAV-PVNKIIPIDAYAIG 121

Query: 159 CPPTAEALIYGILLLQKKIR 178
           CPPT EA+I  I ++Q+KI 
Sbjct: 122 CPPTPEAVIQMIKIVQRKIE 141


>gi|325969611|ref|YP_004245803.1| NADH-quinone oxidoreductase subunits B and C [Vulcanisaeta
           moutnovskia 768-28]
 gi|323708814|gb|ADY02301.1| NADH-quinone oxidoreductase subunits B and C [Vulcanisaeta
           moutnovskia 768-28]
          Length = 419

 Score =  176 bits (447), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 63/140 (45%), Positives = 86/140 (61%), Gaps = 1/140 (0%)

Query: 39  LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIV 98
           L   ++    W    SL  +    ACC VEM     P YD ER G  P  SPRQ+++++V
Sbjct: 3   LDKYLEPYKKWGTKYSLWPVHLVTACCGVEMAHTWNPTYDAERLGSLPWHSPRQTNLILV 62

Query: 99  AGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPG 158
            GT++ KMA  LR +++QM +P+YVI+MGSCA  GG +  SY  V   ++IVPVD Y  G
Sbjct: 63  EGTISFKMARVLRYIWEQMSDPKYVIAMGSCAAEGGVFWNSYHAV-PVNKIVPVDAYAIG 121

Query: 159 CPPTAEALIYGILLLQKKIR 178
           CPPT EA+I  I ++Q+KI 
Sbjct: 122 CPPTPEAVIQMIRIVQRKIE 141


>gi|242399265|ref|YP_002994689.1| Membrane-bound hydrogenase MBH 2, subunit Mbh2J (hydrogenase
           subunit) [Thermococcus sibiricus MM 739]
 gi|242265658|gb|ACS90340.1| Membrane-bound hydrogenase MBH 2, subunit Mbh2J (hydrogenase
           subunit) [Thermococcus sibiricus MM 739]
          Length = 148

 Score =  176 bits (446), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 52/134 (38%), Positives = 78/134 (58%), Gaps = 3/134 (2%)

Query: 52  TGSLMWMT---FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108
             SL            C +E++ A  PRYD ERFG     SPR +DV++V G +    A 
Sbjct: 8   KRSLWVFHASGGSCNACDIEIIAALTPRYDAERFGIKLVGSPRHADVLLVTGAIPKDFAD 67

Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168
            LRR+Y+QMP+P+ VI +G+C   GG ++ SY++    D I+PVD+YVPGCPP  EA++ 
Sbjct: 68  KLRRIYEQMPDPKAVIVIGNCGTSGGVFYDSYNIAGPIDEIIPVDVYVPGCPPRPEAIVD 127

Query: 169 GILLLQKKIRRVGN 182
            ++    K+ ++  
Sbjct: 128 AVVKAWLKLEKLEK 141


>gi|34558135|ref|NP_907950.1| hydrogenase-Ni,Fe-hydrogenase III small subunit [Wolinella
           succinogenes DSM 1740]
 gi|34483853|emb|CAE10850.1| HYDROGENASE-Ni,Fe-hydrogenase III small subunit [Wolinella
           succinogenes]
          Length = 276

 Score =  176 bits (446), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 54/157 (34%), Positives = 95/157 (60%), Gaps = 5/157 (3%)

Query: 29  ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPR 87
           +  EI     +   ++ L    R+ S+  +  G    C +E+  A  P +D ERFGF   
Sbjct: 6   MPEEIKVANEIEQKLELLKHIGRSFSVYRIDCGSCNGCEIEIFAAITPLWDPERFGFKLV 65

Query: 88  ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCD 147
           A+PR +D+++  G +T +M   L R Y+  P+P+ V+++G+C + GG ++ +YSV+ G D
Sbjct: 66  ANPRHADILLCTGPVTRQMYYPLLRAYEAAPDPKLVVALGACGSTGGIFYDAYSVLSGID 125

Query: 148 RIVPVDIYVPGCPPTAEALIYGILL----LQKKIRRV 180
           +I+PVD+Y+PGCPP   ++IYG+      +++K++RV
Sbjct: 126 KIIPVDVYIPGCPPHPASIIYGLTTALGVMEQKLQRV 162


>gi|187251539|ref|YP_001876021.1| NiFe-hydrogenase III small subunit [Elusimicrobium minutum Pei191]
 gi|186971699|gb|ACC98684.1| NiFe-hydrogenase III small subunit [Elusimicrobium minutum Pei191]
          Length = 149

 Score =  175 bits (445), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 55/138 (39%), Positives = 85/138 (61%), Gaps = 3/138 (2%)

Query: 44  DQLVTWARTGSLMWMTF---GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAG 100
           +Q+V WAR  S   + +       C +E + A  P++D+ERFG     +PR +DVM+V+G
Sbjct: 6   EQVVAWARRKSPWILHYNSGSCNGCDIETVAALTPKFDVERFGILQHGTPRHADVMVVSG 65

Query: 101 TLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCP 160
            ++ +    L R+Y+QM EP++V+++G+CA  GG     Y V+ G D+I+PV  Y+PGCP
Sbjct: 66  AVSRQQEKRLLRIYNQMAEPKFVVAVGACACSGGVLQGCYGVLGGVDKILPVSAYIPGCP 125

Query: 161 PTAEALIYGILLLQKKIR 178
           P  EALI GI+ L   + 
Sbjct: 126 PRPEALIDGIVKLLSTVE 143


>gi|118581926|ref|YP_903176.1| NADH-quinone oxidoreductase subunit B [Pelobacter propionicus DSM
           2379]
 gi|118504636|gb|ABL01119.1| NADH-quinone oxidoreductase, B subunit [Pelobacter propionicus DSM
           2379]
          Length = 144

 Score =  175 bits (445), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 52/142 (36%), Positives = 89/142 (62%), Gaps = 3/142 (2%)

Query: 40  VTSVDQLVTWARTGSLMWMTF---GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVM 96
           + ++D+LVTWAR  S   + F       C +E++ +  PR+DLERFG   + +PR +DV+
Sbjct: 1   MKALDKLVTWARIKSPWVIHFNTGACNGCDIEIVDSLTPRFDLERFGIQLKGTPRHADVL 60

Query: 97  IVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV 156
           + +G +T +    L R+Y+QM +P++VI++G+CA   G +   Y+V+ G D ++PV  Y+
Sbjct: 61  LCSGPVTRQTKDRLLRIYEQMADPKFVIAVGTCACSAGVFQGCYNVLGGTDTVLPVSAYI 120

Query: 157 PGCPPTAEALIYGILLLQKKIR 178
           PGC    EA+I G++ L   ++
Sbjct: 121 PGCAARPEAIIDGVVKLLSTLK 142


>gi|257053296|ref|YP_003131129.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Halorhabdus
           utahensis DSM 12940]
 gi|256692059|gb|ACV12396.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Halorhabdus
           utahensis DSM 12940]
          Length = 183

 Score =  175 bits (445), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 58/143 (40%), Positives = 87/143 (60%), Gaps = 3/143 (2%)

Query: 45  QLVTWARTGSLMWMT---FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGT 101
           +++ WAR  S   +         C +E + A MPRYD+ERFG   + +PR +DV++  G 
Sbjct: 3   RIIDWARNRSPWILHMNCGSCNGCDIETLDALMPRYDVERFGIQQKDTPRHADVLVATGP 62

Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP 161
           +T +MA  L R+Y+QMPEP+ VI+ GSCA  GG +   Y+   G D ++PVD+YVPGCP 
Sbjct: 63  VTKQMAPRLERIYEQMPEPKLVIAAGSCAATGGVFQDCYNCHEGIDDVIPVDMYVPGCPI 122

Query: 162 TAEALIYGILLLQKKIRRVGNVK 184
           + E LI GI+ L ++  +    +
Sbjct: 123 SPETLIDGIVALLEEAGQEAKAE 145


>gi|240102096|ref|YP_002958404.1| membrane bound hydrogenase, MbhJ subunit (MbhJ) [Thermococcus
           gammatolerans EJ3]
 gi|239909649|gb|ACS32540.1| membrane bound hydrogenase, MbhJ subunit (MbhJ) [Thermococcus
           gammatolerans EJ3]
          Length = 174

 Score =  175 bits (445), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 51/154 (33%), Positives = 87/154 (56%), Gaps = 4/154 (2%)

Query: 30  SSEITHKGFLVTSVDQLVTWARTGSLMWMT---FGLACCAVEMMQASMPRYDLERFGFAP 86
            S  + +  L   + QL  +    S             C +E++    PRYD ERFG   
Sbjct: 10  GSNSSERERLEKRIAQLCRYIGR-SPWVFHVNTGSCNGCDIEIIAILTPRYDAERFGVKL 68

Query: 87  RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGC 146
             SPR +D+++V G +TN+    ++ VY+Q P+P+ V+++G+CA GGG ++ S       
Sbjct: 69  VGSPRHADILLVTGPVTNQSLERVKLVYEQTPDPKIVVAVGACATGGGVFYESPFTNAPL 128

Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
             ++PVD+YVPGCPP  EA+++G++L  +K+ ++
Sbjct: 129 SNVIPVDVYVPGCPPRPEAILHGVVLALEKLAKI 162


>gi|254168030|ref|ZP_04874878.1| NADH-quinone oxidoreductase, B subunit subfamily [Aciduliprofundum
           boonei T469]
 gi|254168134|ref|ZP_04874981.1| NADH-quinone oxidoreductase, B subunit subfamily [Aciduliprofundum
           boonei T469]
 gi|289596054|ref|YP_003482750.1| NADH-quinone oxidoreductase, B subunit [Aciduliprofundum boonei
           T469]
 gi|197622900|gb|EDY35468.1| NADH-quinone oxidoreductase, B subunit subfamily [Aciduliprofundum
           boonei T469]
 gi|197623073|gb|EDY35640.1| NADH-quinone oxidoreductase, B subunit subfamily [Aciduliprofundum
           boonei T469]
 gi|289533841|gb|ADD08188.1| NADH-quinone oxidoreductase, B subunit [Aciduliprofundum boonei
           T469]
          Length = 180

 Score =  175 bits (445), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 55/126 (43%), Positives = 78/126 (61%)

Query: 52  TGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALR 111
             SL  + F   C A+EM      RYD+ERFG  P A+PRQ+D+M+V G +  K    + 
Sbjct: 24  RRSLWMIHFCTGCGAMEMPPVMTSRYDMERFGIIPMATPRQADLMLVTGYVATKTLKRIV 83

Query: 112 RVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171
           RVY+QM +P+YVI+ GSC   GG Y  SY++++  D+ +PVD+Y+ GC P  EA++   L
Sbjct: 84  RVYEQMQDPKYVIAFGSCPINGGIYWDSYNIIKRLDKYIPVDLYIAGCMPRPEAIMDAFL 143

Query: 172 LLQKKI 177
            L K I
Sbjct: 144 KLMKDI 149


>gi|254173172|ref|ZP_04879845.1| hydrogenase-4 component I [Thermococcus sp. AM4]
 gi|214032581|gb|EEB73410.1| hydrogenase-4 component I [Thermococcus sp. AM4]
          Length = 173

 Score =  175 bits (445), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 53/154 (34%), Positives = 87/154 (56%), Gaps = 4/154 (2%)

Query: 30  SSEITHKGFLVTSVDQLVTWARTGSLMWMT---FGLACCAVEMMQASMPRYDLERFGFAP 86
           +S  + +  L   + QL  +    S             C +E++ A  PRYD ERFG   
Sbjct: 9   NSNSSERERLEKRIAQLCRYIGK-SPWVFHVNTGSCNGCDIEIIAALTPRYDAERFGVKL 67

Query: 87  RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGC 146
             SPR +D+++V G +TN+    ++ VY+Q PEP+ VI++GSC  GG  ++ S       
Sbjct: 68  VGSPRHADILLVTGPVTNQSLERVKLVYEQTPEPKIVIAVGSCPTGGSVFYESPFTNAPL 127

Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
             ++PVD+YVPGCPP  EA+++G++L  +K+ ++
Sbjct: 128 SNVIPVDVYVPGCPPRPEAILHGVVLALEKLAKI 161


>gi|161870822|ref|YP_001599995.1| NADH dehydrogenase I chain B [Neisseria meningitidis 053442]
 gi|161596375|gb|ABX74035.1| NADH dehydrogenase I chain B [Neisseria meningitidis 053442]
          Length = 124

 Score =  175 bits (444), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 85/118 (72%), Positives = 98/118 (83%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
           +  KGF+ TS D ++ + RTGSL  +TFGLACCAVEMM A M RYDL+RFG   R SPRQ
Sbjct: 6   VLKKGFITTSADTVLNYMRTGSLWPVTFGLACCAVEMMHAGMARYDLDRFGIIFRPSPRQ 65

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150
           +D+MIV GTLTNKMA ALRRVYDQ+ EPR+V+SMGSCANGGGYYHYSYSVVRG DR+V
Sbjct: 66  ADLMIVRGTLTNKMAPALRRVYDQLAEPRWVLSMGSCANGGGYYHYSYSVVRGADRVV 123


>gi|88603826|ref|YP_504004.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Methanospirillum
           hungatei JF-1]
 gi|88189288|gb|ABD42285.1| Membrane bound hydrogenase subunit mbhJ [Methanospirillum hungatei
           JF-1]
          Length = 145

 Score =  175 bits (444), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 52/133 (39%), Positives = 81/133 (60%), Gaps = 3/133 (2%)

Query: 53  GSLMWMT---FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASA 109
            SL            C +E++ A  PRYD ERFG     SPR +DV++V G +T++M   
Sbjct: 9   RSLWVFHVNSGSCNGCDIEIVAALCPRYDPERFGIKLVGSPRHADVLLVTGPVTHQMRDR 68

Query: 110 LRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYG 169
           ++RVY+QM  P+ V+ +G+C   GG ++ SY++    D+++PVD+YVPGC P  EA+IYG
Sbjct: 69  VKRVYEQMAAPKVVMCVGTCGQSGGVFYDSYNLDGPIDQVIPVDVYVPGCAPRPEAIIYG 128

Query: 170 ILLLQKKIRRVGN 182
           ++    K+ R+  
Sbjct: 129 VVQAIAKLERLEK 141


>gi|14520931|ref|NP_126406.1| CO-induced hydrogenase related, subunit L [Pyrococcus abyssi GE5]
 gi|5458148|emb|CAB49637.1| NADH ubiquinone oxidoreductase subunit [Pyrococcus abyssi GE5]
          Length = 170

 Score =  175 bits (444), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 53/156 (33%), Positives = 90/156 (57%), Gaps = 4/156 (2%)

Query: 28  RISSEITHKGFLVTSVDQLVTWARTGSLMWMT---FGLACCAVEMMQASMPRYDLERFGF 84
           ++ ++   +  L   + QL  +    S             C +E++ A  PRYD ERFG 
Sbjct: 4   KLPAQTEERKRLERRIAQLCRFIGR-SPWVFHVNSGSCNGCDIEIIAALTPRYDAERFGV 62

Query: 85  APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR 144
               SPR +D+++V G +TN+    ++ VY+Q PEP+ VI++GSC  GG  ++ S     
Sbjct: 63  KLVGSPRHADILLVTGPVTNQSLERVKLVYEQTPEPKIVIAIGSCPTGGSVFYESPFTNA 122

Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
             DR++PVD++VPGCPP  EA+++G++L  +K+ ++
Sbjct: 123 PLDRVIPVDVFVPGCPPRPEAILHGVVLALEKLAKM 158


>gi|323700400|ref|ZP_08112312.1| NADH dehydrogenase (quinone) [Desulfovibrio sp. ND132]
 gi|323460332|gb|EGB16197.1| NADH dehydrogenase (quinone) [Desulfovibrio desulfuricans ND132]
          Length = 147

 Score =  175 bits (443), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 53/129 (41%), Positives = 82/129 (63%), Gaps = 3/129 (2%)

Query: 46  LVTWARTGSLMWMTF---GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL 102
            +  +R  S   M F       C +E++    P YD+ERFG     +P+ +DV++V GT+
Sbjct: 5   FIKKSRAKSPWIMHFDCGSCNGCDIEVLACLTPLYDVERFGIVHVGNPKHADVLLVTGTV 64

Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162
            ++    L+ +YDQMPEP+ VI++GSC N GG +  +Y+VV G D+++PVD+YVPGCP  
Sbjct: 65  NHRNKKVLKNLYDQMPEPKAVIAIGSCGNTGGIFREAYNVVGGVDKVIPVDVYVPGCPAK 124

Query: 163 AEALIYGIL 171
            EA+I G++
Sbjct: 125 PEAIIDGVV 133


>gi|260575431|ref|ZP_05843430.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Rhodobacter sp. SW2]
 gi|259022351|gb|EEW25648.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Rhodobacter sp. SW2]
          Length = 177

 Score =  175 bits (443), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 62/176 (35%), Positives = 93/176 (52%), Gaps = 7/176 (3%)

Query: 10  IISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVE 68
           ++ G     L         ++ E   +     +  +L    R+ S+  +  G    C +E
Sbjct: 5   LLQGLLRRPLTDKAPKVDPLAVEELGEAVKFAAYRRL---GRSLSIRQVDAGSCNGCELE 61

Query: 69  MMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGS 128
           +   S P YDLERFG    ASPR +DV++V G +T  MA AL R Y   PEP++V++ G 
Sbjct: 62  INALSNPYYDLERFGLHFVASPRHADVLLVTGPVTRNMAEALERTYAATPEPKWVVACGD 121

Query: 129 CANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           CA  GG +  SY++V G   ++PVD+++PGCPP   AL+ G+L L   I R G  +
Sbjct: 122 CARDGGCFAGSYAIVGGVAAVLPVDLHIPGCPPNPTALLQGLLAL---IERAGTAR 174


>gi|303327574|ref|ZP_07358015.1| carbon monoxide-induced hydrogenase, CooL subunit [Desulfovibrio
           sp. 3_1_syn3]
 gi|302862514|gb|EFL85447.1| carbon monoxide-induced hydrogenase, CooL subunit [Desulfovibrio
           sp. 3_1_syn3]
          Length = 187

 Score =  175 bits (443), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 50/132 (37%), Positives = 84/132 (63%), Gaps = 3/132 (2%)

Query: 43  VDQLVTWARTGSLMWMTF---GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVA 99
           +D ++  +R  S   + F       C +E++    P YD+ERFG     +P+ +DV++V 
Sbjct: 4   LDAMIKRSRLKSPWIIHFDCGSCNGCDIEVLACLTPMYDVERFGVVNTGNPKHADVLLVT 63

Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGC 159
           GT+ ++    LR++YDQMPEP+ V+S+G+C   GG +  SY+++ G   ++PVD++VPGC
Sbjct: 64  GTVNHRNRHVLRQIYDQMPEPKAVVSIGACNLSGGVFKDSYNILNGAYNVIPVDVFVPGC 123

Query: 160 PPTAEALIYGIL 171
           PP  EA+I G++
Sbjct: 124 PPKPEAIIDGVV 135


>gi|220904936|ref|YP_002480248.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
 gi|219869235|gb|ACL49570.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
          Length = 185

 Score =  175 bits (443), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 49/133 (36%), Positives = 84/133 (63%), Gaps = 3/133 (2%)

Query: 43  VDQLVTWARTGSLMWMTF---GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVA 99
           VD+++  +R  S   + F       C +E++    P YD+ERFG     +P+ +DV++V 
Sbjct: 4   VDKMIKRSRLKSPWIVHFDCGSCNGCDIEVLACLTPMYDVERFGVVNAGNPKHADVLLVT 63

Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGC 159
           GT+ ++    L+++Y+QMP P+ VIS+G+C   GG +  +Y+V+ G   ++PVD++VPGC
Sbjct: 64  GTVNHRNRHVLKQIYEQMPSPKAVISLGACNLSGGVFKDTYNVLNGAHNVIPVDVFVPGC 123

Query: 160 PPTAEALIYGILL 172
           PP  EA+I G++ 
Sbjct: 124 PPKPEAIIDGVVE 136


>gi|218886615|ref|YP_002435936.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfovibrio
           vulgaris str. 'Miyazaki F']
 gi|193479935|gb|ACF17988.1| EchC [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218757569|gb|ACL08468.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfovibrio
           vulgaris str. 'Miyazaki F']
          Length = 157

 Score =  175 bits (443), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 47/139 (33%), Positives = 83/139 (59%), Gaps = 3/139 (2%)

Query: 43  VDQLVTWARTGSLMWMTF---GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVA 99
           ++  +   R  S   + F       C +E++    P +D+ERFG     +P+ +DV++V 
Sbjct: 4   LENWINKGRLKSPWVVHFDCGSCNGCDIEVLACLTPVFDVERFGIINVGNPKHADVLLVT 63

Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGC 159
           GT+ ++    L+ +YDQMP+P+ VI++G+C   GG +   Y+VV G D+++PVD+YVPGC
Sbjct: 64  GTVNHRNKKVLKNIYDQMPDPKAVIAIGACGTSGGVFRECYNVVGGVDQVIPVDVYVPGC 123

Query: 160 PPTAEALIYGILLLQKKIR 178
           P   +A+I G++     ++
Sbjct: 124 PAKPDAIIDGVVTALDVVK 142


>gi|260892452|ref|YP_003238549.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Ammonifex degensii
           KC4]
 gi|260864593|gb|ACX51699.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Ammonifex degensii
           KC4]
          Length = 143

 Score =  174 bits (442), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 51/136 (37%), Positives = 84/136 (61%), Gaps = 3/136 (2%)

Query: 46  LVTWARTGSLMWMTFG---LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL 102
           L+T AR  S   + F       C +E++    P YD+ERFG     +P+ +D+++V G  
Sbjct: 3   LLTKARVKSPWLLHFCSGSCNGCDIEILACLTPYYDVERFGILHMGNPKHADILLVTGPA 62

Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162
             +    L+ +Y QMP+P+ V+++G+CA  GG +H  Y+++ G D+++PVD+YVPGC   
Sbjct: 63  NRRNYKVLQNLYAQMPDPKVVVAVGTCACTGGIFHNCYNIMGGIDKVIPVDVYVPGCAAR 122

Query: 163 AEALIYGILLLQKKIR 178
            EA+I G++L  KK+R
Sbjct: 123 PEAIIDGVVLALKKLR 138


>gi|153869972|ref|ZP_01999467.1| NADH-plastoquinone oxidoreductase subunit K [Beggiatoa sp. PS]
 gi|152073562|gb|EDN70533.1| NADH-plastoquinone oxidoreductase subunit K [Beggiatoa sp. PS]
          Length = 250

 Score =  174 bits (442), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 54/170 (31%), Positives = 90/170 (52%)

Query: 10  IISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEM 69
           +I+  +     + + D S  + +   +  L   +D++    R+ SL  + +   C A+E+
Sbjct: 1   MIATNTIPVSSEPNTDISCRTIDPQERSMLRKVIDRIADRCRSRSLFILHYCTGCGAIEL 60

Query: 70  MQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSC 129
                 R+D ER G  P  +PRQ+D++++ G L+ K    +   Y+QM  P+YVI MGSC
Sbjct: 61  PPTITSRFDAERLGIQPMVTPRQADILLITGYLSVKTLKRVILSYEQMQAPKYVIGMGSC 120

Query: 130 ANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
              GG Y +SY+ V+     +PVD+Y+ GC P  EA++ G L L   I +
Sbjct: 121 TINGGMYWHSYATVKRLQEYMPVDMYMAGCMPRPEAILEGFLQLIDNIDK 170


>gi|312877215|ref|ZP_07737184.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|311796024|gb|EFR12384.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Caldicellulosiruptor
           lactoaceticus 6A]
          Length = 154

 Score =  174 bits (441), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 47/138 (34%), Positives = 83/138 (60%), Gaps = 7/138 (5%)

Query: 52  TGSLMWMTF---GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108
             S   + +       C +E++    P YD+ERFG     +P+ +D+++V+G++ ++ A 
Sbjct: 8   KKSPWIVHYDCNSCNGCDIEILATLTPVYDVERFGIINVGNPKHADILVVSGSVNHRNAR 67

Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168
            L+ +Y+QMP P+ V+++G+CA  GG +   Y+ + G D +VPVD+YVPGC P  EA++ 
Sbjct: 68  VLKTIYEQMPHPKAVVAIGACACSGGIFKECYNTLGGADTVVPVDVYVPGCAPRPEAIME 127

Query: 169 GILL----LQKKIRRVGN 182
           GIL     L++K + +  
Sbjct: 128 GILKAAQLLEEKKKNMKK 145


>gi|312793271|ref|YP_004026194.1| NADH ubiquinone oxidoreductase 20 kda subunit [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312180411|gb|ADQ40581.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Caldicellulosiruptor
           kristjanssonii 177R1B]
          Length = 154

 Score =  174 bits (441), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 47/138 (34%), Positives = 83/138 (60%), Gaps = 7/138 (5%)

Query: 52  TGSLMWMTF---GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108
             S   + +       C +E++    P YD+ERFG     +P+ +D+++V+G++ ++ A 
Sbjct: 8   KKSPWIVHYDCNSCNGCDIEILATLTPVYDVERFGIINVGNPKHADILVVSGSVNHRNAR 67

Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168
            L+ +Y+QMP P+ V+++G+CA  GG +   Y+ + G D +VPVD+YVPGC P  EA++ 
Sbjct: 68  VLKTIYEQMPHPKAVVAIGACACSGGIFKECYNTLGGADTVVPVDVYVPGCAPRPEAIME 127

Query: 169 GILL----LQKKIRRVGN 182
           GIL     L++K + +  
Sbjct: 128 GILKAAQLLEEKKKNIKK 145


>gi|222529076|ref|YP_002572958.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Caldicellulosiruptor
           bescii DSM 6725]
 gi|312134931|ref|YP_004002269.1| NADH ubiquinone oxidoreductase 20 kda subunit [Caldicellulosiruptor
           owensensis OL]
 gi|312622668|ref|YP_004024281.1| NADH ubiquinone oxidoreductase 20 kda subunit [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|222455923|gb|ACM60185.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Caldicellulosiruptor
           bescii DSM 6725]
 gi|311774982|gb|ADQ04469.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Caldicellulosiruptor
           owensensis OL]
 gi|312203135|gb|ADQ46462.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Caldicellulosiruptor
           kronotskyensis 2002]
          Length = 154

 Score =  174 bits (441), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 47/138 (34%), Positives = 83/138 (60%), Gaps = 7/138 (5%)

Query: 52  TGSLMWMTF---GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108
             S   + +       C +E++    P YD+ERFG     +P+ +D+++V+G++ ++ A 
Sbjct: 8   KKSPWIVHYDCNSCNGCDIEILATLTPVYDVERFGIINVGNPKHADILVVSGSVNHRNAR 67

Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168
            L+ +Y+QMP P+ V+++G+CA  GG +   Y+ + G D +VPVD+YVPGC P  EA++ 
Sbjct: 68  VLKTIYEQMPHPKAVVAIGACACSGGIFKECYNTLGGADTVVPVDVYVPGCAPRPEAIME 127

Query: 169 GILL----LQKKIRRVGN 182
           GIL     L++K + +  
Sbjct: 128 GILKAAQLLEEKKKNMKK 145


>gi|319789460|ref|YP_004151093.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Thermovibrio
           ammonificans HB-1]
 gi|317113962|gb|ADU96452.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Thermovibrio
           ammonificans HB-1]
          Length = 177

 Score =  174 bits (441), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 51/135 (37%), Positives = 81/135 (60%), Gaps = 3/135 (2%)

Query: 51  RTGSLMWMTF---GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMA 107
           R  S   + +       C +E++    P+YDLERFG   R +P+QSDV+IV G +T +  
Sbjct: 7   RKKSPWLLHYNTGSCNGCDIEILACLAPKYDLERFGILNRGNPKQSDVLIVTGPVTKRAK 66

Query: 108 SALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALI 167
             L R+Y +MPEP+ V+++G+CA  GG + + Y+V  G D ++PVD+YVPGC    E++I
Sbjct: 67  ERLLRLYYEMPEPKVVVAVGACACTGGVFRHMYNVENGVDSVIPVDVYVPGCAARPESII 126

Query: 168 YGILLLQKKIRRVGN 182
            G++   + + R   
Sbjct: 127 DGVIKALEILERKKK 141


>gi|126460561|ref|YP_001056839.1| NADH-quinone oxidoreductase, B subunit [Pyrobaculum calidifontis
           JCM 11548]
 gi|126250282|gb|ABO09373.1| NADH-quinone oxidoreductase, B subunit [Pyrobaculum calidifontis
           JCM 11548]
          Length = 192

 Score =  173 bits (440), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 58/138 (42%), Positives = 86/138 (62%), Gaps = 1/138 (0%)

Query: 41  TSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAG 100
             ++ L  W    SL  +    +CC VE+   S P +D ER+G  P  + RQS+V++V G
Sbjct: 15  AKLEPLFKWGVRWSLWPVHLVTSCCGVEVAHTSAPGFDAERWGVLPFHTMRQSNVILVEG 74

Query: 101 TLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCP 160
           T+T KMA  L++VY+QMPEP++VI+MG+CA  GG +  SY VV+    +    +Y+ GCP
Sbjct: 75  TVTKKMAKVLKQVYEQMPEPKFVIAMGACAVRGGLFWNSYHVVQVDTVVPVD-VYIAGCP 133

Query: 161 PTAEALIYGILLLQKKIR 178
           PT EA+I   ++L  KI+
Sbjct: 134 PTPEAVIRAFIMLHNKIK 151


>gi|332796230|ref|YP_004457730.1| NADH-quinone oxidoreductase subunit B [Acidianus hospitalis W1]
 gi|332693965|gb|AEE93432.1| NADH-quinone oxidoreductase, B subunit [Acidianus hospitalis W1]
          Length = 170

 Score =  173 bits (440), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 64/144 (44%), Positives = 90/144 (62%)

Query: 41  TSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAG 100
             +  L  W    SL    F  +CC  E    +  R+D ERFG  P +S RQS+++++ G
Sbjct: 26  KPIRDLRDWGTAFSLWPPHFTTSCCGAEFGAFAAARFDAERFGMLPFSSSRQSNILVIEG 85

Query: 101 TLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCP 160
           T+T KMA A R VY+QMPEP+YV+++G+C+  GG +  SY+ V   +  +PVDIYVPGCP
Sbjct: 86  TMTRKMARAARIVYEQMPEPKYVMAIGACSLEGGIFWNSYNTVLPSEVGIPVDIYVPGCP 145

Query: 161 PTAEALIYGILLLQKKIRRVGNVK 184
              EA+  G+L+LQKKIR    +K
Sbjct: 146 IRPEAIARGLLMLQKKIRHQSTIK 169


>gi|302872081|ref|YP_003840717.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Caldicellulosiruptor
           obsidiansis OB47]
 gi|312127862|ref|YP_003992736.1| NADH ubiquinone oxidoreductase 20 kda subunit [Caldicellulosiruptor
           hydrothermalis 108]
 gi|302574940|gb|ADL42731.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Caldicellulosiruptor
           obsidiansis OB47]
 gi|311777881|gb|ADQ07367.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Caldicellulosiruptor
           hydrothermalis 108]
          Length = 154

 Score =  173 bits (440), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 48/138 (34%), Positives = 83/138 (60%), Gaps = 7/138 (5%)

Query: 52  TGSLMWMTF---GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108
             S   + +       C +E++    P YD+ERFG     +P+ +D+++V+G++ ++ A 
Sbjct: 8   KKSPWIVHYDCNSCNGCDIEILATLTPVYDVERFGIINVGNPKHADILVVSGSVNHRNAR 67

Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168
            L+ +YDQMP P+ V+++G+CA  GG +   Y+ + G D +VPVD+YVPGC P  EA++ 
Sbjct: 68  VLKTIYDQMPHPKAVVAIGACACSGGIFKECYNTLGGADTVVPVDVYVPGCAPRPEAIME 127

Query: 169 GILL----LQKKIRRVGN 182
           GIL     L++K + +  
Sbjct: 128 GILKAAQLLEEKKKNMKK 145


>gi|332157667|ref|YP_004422946.1| NADH-ubiquinone oxidoreductase subunit [Pyrococcus sp. NA2]
 gi|331033130|gb|AEC50942.1| NADH-ubiquinone oxidoreductase subunit [Pyrococcus sp. NA2]
          Length = 172

 Score =  173 bits (440), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 53/154 (34%), Positives = 87/154 (56%), Gaps = 4/154 (2%)

Query: 30  SSEITHKGFLVTSVDQLVTWARTGSLMWMT---FGLACCAVEMMQASMPRYDLERFGFAP 86
           +S    +  L   + QL  +    S             C +E++ A  PRYD ERFG   
Sbjct: 9   NSNQEERRKLERRISQLCRFIGR-SPWVFHVNSGSCNGCDIEIIAALTPRYDAERFGVKL 67

Query: 87  RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGC 146
             SPR +D+++V G +TN+    ++ VY+Q P+P+ VI++GSC  GG  ++ S       
Sbjct: 68  VGSPRHADILLVTGPVTNQSLERVKLVYEQTPDPKIVIAVGSCPTGGSVFYESPFTNAPL 127

Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           D ++PVD++VPGCPP  EA++YG++L  +K+ ++
Sbjct: 128 DNVIPVDVFVPGCPPRPEAILYGVVLALEKLAKI 161


>gi|169831261|ref|YP_001717243.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Candidatus
           Desulforudis audaxviator MP104C]
 gi|169638105|gb|ACA59611.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Candidatus
           Desulforudis audaxviator MP104C]
          Length = 141

 Score =  173 bits (439), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 50/139 (35%), Positives = 84/139 (60%), Gaps = 3/139 (2%)

Query: 46  LVTWARTGSLMWMTFG---LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL 102
           L+  AR  S   + +       C +E++    P YD+ERFG     +P+ +D+++V G  
Sbjct: 3   LINKARVKSPWIVHYCAGSCNGCDIEILACLTPYYDVERFGILNIGNPKHADLLVVTGPA 62

Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162
             + +  L+ +YDQMPEP+ V+++G+CA  GG +H  Y+++ G DR++PVD+YVPGC   
Sbjct: 63  NMRCSRVLKNLYDQMPEPKLVMAVGACAATGGVFHNCYNILGGIDRVIPVDVYVPGCAAR 122

Query: 163 AEALIYGILLLQKKIRRVG 181
            EA+I G++L   K+  + 
Sbjct: 123 PEAIIDGVVLALDKLSNIK 141


>gi|18977804|ref|NP_579161.1| mbh10 NADH dehydrogenase subunit [Pyrococcus furiosus DSM 3638]
 gi|18893553|gb|AAL81556.1| mbh10 NADH dehydrogenase subunit (like cCoL, EchC, HycH)
           [Pyrococcus furiosus DSM 3638]
          Length = 167

 Score =  173 bits (438), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 52/150 (34%), Positives = 87/150 (58%), Gaps = 4/150 (2%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMT---FGLACCAVEMMQASMPRYDLERFGFAPRASP 90
           + +  L   + QL  +    S             C +E++ A  PRYD ERFG     SP
Sbjct: 5   SERKRLEKRIAQLCKFIGR-SPWVFHVNSGSCNGCDIEIIAALTPRYDAERFGVKLVGSP 63

Query: 91  RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150
           R +D+++V G +TN+    ++ VY+Q P+P+ VI++G+C  GG  ++ S       DRI+
Sbjct: 64  RHADILLVTGPVTNQSLERVKLVYEQTPDPKIVIAIGACPTGGSVFYESPFTNAPLDRII 123

Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           PVD++VPGCPP  EA+++G++L  +K+ ++
Sbjct: 124 PVDVFVPGCPPRPEAILHGVVLALEKLAKM 153


>gi|119719977|ref|YP_920472.1| NADH-quinone oxidoreductase, B subunit [Thermofilum pendens Hrk 5]
 gi|119525097|gb|ABL78469.1| NADH-quinone oxidoreductase, B subunit [Thermofilum pendens Hrk 5]
          Length = 142

 Score =  173 bits (438), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 53/123 (43%), Positives = 78/123 (63%), Gaps = 3/123 (2%)

Query: 51  RTGSLMWMTF---GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMA 107
           R  SL    F   G   C +E + A  PR+DLER G     SPR +DV++V G +T   A
Sbjct: 8   RRKSLWVYHFNSGGCNGCDIEFVAALTPRFDLERLGVQLVPSPRHADVLVVTGPVTRASA 67

Query: 108 SALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALI 167
            AL+ +YDQ+PEPR V++ G+CA  GG +   Y+V+ G D+++PVD+ +PGCPP  E+L+
Sbjct: 68  DALKTIYDQVPEPRIVVAFGTCACSGGVFSNCYNVLGGADKVLPVDVKIPGCPPKPESLL 127

Query: 168 YGI 170
           + +
Sbjct: 128 HAL 130


>gi|154250405|ref|YP_001411230.1| NADH dehydrogenase subunit B [Fervidobacterium nodosum Rt17-B1]
 gi|154154341|gb|ABS61573.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Fervidobacterium
           nodosum Rt17-B1]
          Length = 181

 Score =  173 bits (438), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 53/149 (35%), Positives = 83/149 (55%), Gaps = 4/149 (2%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP 90
           S+I  +       DQL    R+ S+  + +   C AVE+  +   R+D+ER G  P A+P
Sbjct: 2   SKIDERSVWEKIADQL----RSRSMWMLHYCTGCGAVELPPSMTSRFDMERLGMGPMATP 57

Query: 91  RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150
           RQ+D+ ++ G L+ K    +   Y++M +P+YVI  GSC   GG Y+ SYS +   D  +
Sbjct: 58  RQADIFLITGYLSAKTLRRVIYTYEKMADPKYVIGFGSCTINGGIYYDSYSTINRLDYYI 117

Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           PVD+Y+ GC P  EA++     L + IR+
Sbjct: 118 PVDLYIAGCMPRPEAILNAFNQLMEMIRK 146


>gi|224372676|ref|YP_002607048.1| hydrogenase-4 component I [Nautilia profundicola AmH]
 gi|223589154|gb|ACM92890.1| hydrogenase-4 component I [Nautilia profundicola AmH]
          Length = 164

 Score =  173 bits (438), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 55/137 (40%), Positives = 85/137 (62%), Gaps = 3/137 (2%)

Query: 51  RTGSLMWMTF---GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMA 107
           R  S   + +   G   C +E++ A  P+YD+ERFG   R +P+QSD+++V G +T +  
Sbjct: 8   RKKSPWILHYNTGGCNGCDIEILAALAPKYDIERFGMLNRGNPKQSDILLVTGPVTKRCR 67

Query: 108 SALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALI 167
             LRR+Y +MPEP+ V++MG+CA+GGG +   Y V  G D I+PVD+++PGC P  EA+I
Sbjct: 68  DVLRRLYLEMPEPKVVVAMGACAHGGGIFRDFYHVENGVDNIIPVDVWIPGCAPRVEAVI 127

Query: 168 YGILLLQKKIRRVGNVK 184
            G++   K   +    K
Sbjct: 128 DGMVEAVKIWEKKTKEK 144


>gi|149194384|ref|ZP_01871481.1| NADH:ubiquinone oxidoreductase 20 kD subunit and related Fe-S
           oxidoreductase [Caminibacter mediatlanticus TB-2]
 gi|149135559|gb|EDM24038.1| NADH:ubiquinone oxidoreductase 20 kD subunit and related Fe-S
           oxidoreductase [Caminibacter mediatlanticus TB-2]
          Length = 164

 Score =  173 bits (438), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 53/125 (42%), Positives = 81/125 (64%), Gaps = 3/125 (2%)

Query: 51  RTGSLMWMTF---GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMA 107
           R  S   + +   G   C +E++    P+YD+ERFG   R +P+QSD+++V G +T    
Sbjct: 8   RKKSPWILHYNTGGCNGCDIEILATLAPKYDIERFGALNRGNPKQSDILLVTGPVTMHCK 67

Query: 108 SALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALI 167
             LRR+Y +MPEP+ V++MG+C +GGG + + Y+V  G D I+PVD+++PGC P  EALI
Sbjct: 68  DVLRRLYLEMPEPKVVVAMGACGHGGGVFRHLYNVNDGVDSIIPVDVWIPGCCPRPEALI 127

Query: 168 YGILL 172
            GI+ 
Sbjct: 128 DGIVE 132


>gi|217077746|ref|YP_002335464.1| NADH dehydrogenase subunit B [Thermosipho africanus TCF52B]
 gi|217037601|gb|ACJ76123.1| NADH dehydrogenase beta subunit [Thermosipho africanus TCF52B]
          Length = 180

 Score =  172 bits (437), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 54/147 (36%), Positives = 81/147 (55%), Gaps = 4/147 (2%)

Query: 32  EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPR 91
           +   +G      DQL    R+ SL  + +   C A+E+  +   R+D+ERFG  P A+PR
Sbjct: 2   KTNERGIWEKIADQL----RSKSLWMLYYCTGCGAIELPPSMTSRFDMERFGMGPMATPR 57

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
           Q+D++ + G L+ K    +   Y+ M EP+YV+  GSC   GG Y+ SY+ +   D  +P
Sbjct: 58  QTDILFITGYLSTKTLRRVIYTYEMMSEPKYVVGFGSCTLNGGIYYDSYATINKLDNYIP 117

Query: 152 VDIYVPGCPPTAEALIYGILLLQKKIR 178
           VD+Y+ GC P  EAL+     L K IR
Sbjct: 118 VDLYIAGCMPRPEALLNAFNELMKMIR 144


>gi|146296549|ref|YP_001180320.1| NADH ubiquinone oxidoreductase, 20 kDa subunit
           [Caldicellulosiruptor saccharolyticus DSM 8903]
 gi|145410125|gb|ABP67129.1| ech hydrogenase subunit C [Caldicellulosiruptor saccharolyticus DSM
           8903]
          Length = 154

 Score =  172 bits (437), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 47/138 (34%), Positives = 83/138 (60%), Gaps = 7/138 (5%)

Query: 52  TGSLMWMTF---GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108
             S   + +       C +E++    P YD+ERFG     +P+ +D+++V+G++ ++ A 
Sbjct: 8   KKSPWIIHYDCNSCNGCDIEILSTLTPVYDVERFGIINVGNPKHADILVVSGSVNHRNAR 67

Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168
            L+ +YDQMP P+ V+++G+CA  GG +   Y+ + G D ++PVD+YVPGC P  EA++ 
Sbjct: 68  VLKNIYDQMPHPKAVVAIGACACSGGIFKECYNTLGGADTVIPVDVYVPGCAPRPEAIME 127

Query: 169 GILL----LQKKIRRVGN 182
           GIL     L++K + +  
Sbjct: 128 GILKAAEILEEKKKNMKK 145


>gi|307353719|ref|YP_003894770.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanoplanus
           petrolearius DSM 11571]
 gi|307156952|gb|ADN36332.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanoplanus
           petrolearius DSM 11571]
          Length = 145

 Score =  172 bits (437), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 52/135 (38%), Positives = 78/135 (57%), Gaps = 3/135 (2%)

Query: 53  GSLMWMTF---GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASA 109
            SL    F       C +E++   MPR+D ERFG     SPR +DV++V G + + M   
Sbjct: 9   RSLWVFHFNSGSCNGCDIEIVATLMPRHDPERFGIKLVGSPRHADVLLVTGPVVHAMKER 68

Query: 110 LRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYG 169
           L RVY+QM +P+ VI +G+C   GG ++ SY++      ++PVD+YVPGC P  EA+I G
Sbjct: 69  LIRVYEQMADPKVVICVGACGQSGGVFYDSYNLDGPVGEVIPVDVYVPGCAPRPEAIING 128

Query: 170 ILLLQKKIRRVGNVK 184
           ++    K+ R+   K
Sbjct: 129 VVKAIAKLERLQEGK 143


>gi|124485778|ref|YP_001030394.1| membrane bound hydrogenase subunit mbhJ [Methanocorpusculum
           labreanum Z]
 gi|124363319|gb|ABN07127.1| Membrane bound hydrogenase subunit mbhJ [Methanocorpusculum
           labreanum Z]
          Length = 143

 Score =  172 bits (436), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 57/135 (42%), Positives = 80/135 (59%), Gaps = 3/135 (2%)

Query: 53  GSLMWMTF---GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASA 109
            SL    F       C +E++    PRYD ERFG     SPR +DV++V G +TN+MA  
Sbjct: 9   KSLWVFHFNAGSCNGCDIEIVATLTPRYDPERFGVKLVGSPRHADVLLVTGPVTNQMADR 68

Query: 110 LRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYG 169
           LRRVY QM  P+ V+ +G+C   GG +  SY++    D+I+PVD+YVPGC P  EA+I G
Sbjct: 69  LRRVYAQMAGPKVVMVVGTCGQSGGVFSTSYNLAGPVDQIIPVDVYVPGCAPRPEAIING 128

Query: 170 ILLLQKKIRRVGNVK 184
           ++    K+ R+   K
Sbjct: 129 VVTAIAKLERLEGGK 143


>gi|315231237|ref|YP_004071673.1| NADH-ubiquinone oxidoreductase subunit B [Thermococcus barophilus
           MP]
 gi|315184265|gb|ADT84450.1| NADH-ubiquinone oxidoreductase chain B [Thermococcus barophilus MP]
          Length = 148

 Score =  172 bits (436), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 53/131 (40%), Positives = 78/131 (59%), Gaps = 5/131 (3%)

Query: 45  QLVTWARTGSLMWMT---FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGT 101
           +L  + R  SL            C +E++    PRYD+ERFG     SPR +DV++V G 
Sbjct: 3   KLTNFKR--SLWVFHASGGSCNACDIEIVALLTPRYDVERFGIKLAGSPRHADVLLVTGA 60

Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP 161
           +    A  LRR+Y+QMP+P+ VI +G+C   GG ++ SY++    D I+PVD+YVPGCPP
Sbjct: 61  IPRDFADKLRRIYEQMPDPKAVIVVGNCGTSGGVFYDSYNIAGPIDEIIPVDVYVPGCPP 120

Query: 162 TAEALIYGILL 172
             EA+I  ++ 
Sbjct: 121 RPEAIIDAVVK 131


>gi|239618414|ref|YP_002941736.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Kosmotoga olearia
           TBF 19.5.1]
 gi|239507245|gb|ACR80732.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Kosmotoga olearia
           TBF 19.5.1]
          Length = 179

 Score =  172 bits (435), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 51/139 (36%), Positives = 80/139 (57%)

Query: 41  TSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAG 100
           ++ +++    R  SL  + +   C A+E+      R+D+ERFG  P A+PRQ+D++++ G
Sbjct: 6   SAWNKVANMLRARSLWMLYYCTGCGAIELPPTMTARFDMERFGIGPMATPRQADILLITG 65

Query: 101 TLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCP 160
            L+ K    +   Y+QM  P+YV+  GSC   GG Y  SY+ +   D  +PVD+Y+ GC 
Sbjct: 66  YLSTKTLRRVIYTYEQMQAPKYVVGFGSCTINGGIYFDSYATINRLDLYLPVDLYLAGCM 125

Query: 161 PTAEALIYGILLLQKKIRR 179
           P  EA++ G   L KKI R
Sbjct: 126 PRPEAIVNGFKELMKKIDR 144


>gi|116255492|ref|YP_771325.1| putative formate hydrogenlyase subunit 7 [Rhizobium leguminosarum
           bv. viciae 3841]
 gi|115260140|emb|CAK03241.1| putative formate hydrogenlyase subunit 7 [Rhizobium leguminosarum
           bv. viciae 3841]
          Length = 177

 Score =  171 bits (433), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 57/175 (32%), Positives = 91/175 (52%), Gaps = 9/175 (5%)

Query: 10  IISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVE 68
           I    +       DA  + +++ I     L           R+ S+  +  G    C +E
Sbjct: 10  IRPPLTELRPPVSDAAMTELAAAIERSARL--------RLGRSLSIRAVDAGSCNGCELE 61

Query: 69  MMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGS 128
           M       YD+ERFG    ASPR +DV++V G +T  M  AL R Y   P+P++V+++G 
Sbjct: 62  MHALGNTFYDIERFGLRFVASPRHADVLLVTGPVTRNMVQALERTYIATPDPKWVVALGD 121

Query: 129 CANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           C   GG +  SY+V+ G  ++VPVD+++PGCPP+   ++ G+L L + + R G V
Sbjct: 122 CGRDGGCFAGSYAVLGGVSKVVPVDLHIPGCPPSPMDILKGLLALLEDVNREGRV 176


>gi|66219963|gb|AAY42996.1| Nqo6 [Rhodothermus marinus]
          Length = 169

 Score =  171 bits (433), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 69/129 (53%), Positives = 96/129 (74%), Gaps = 2/129 (1%)

Query: 56  MWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVY 114
           M M  GLACCA+EMM  + P+YD+ RFG    R SPRQ+D+MIVAG  + KMA A+RRV+
Sbjct: 1   MPMPMGLACCAIEMMAFAGPKYDVARFGSEAMRFSPRQADLMIVAGWCSYKMAHAIRRVW 60

Query: 115 DQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQ 174
           DQMP+P++ I+MG+CA+ GG  H  Y VV+G D  +PVD+Y+PGCPP  EA+++ ++ +Q
Sbjct: 61  DQMPDPKWCIAMGACASTGGM-HRCYGVVQGVDNFLPVDVYIPGCPPRPEAVLHALMDIQ 119

Query: 175 KKIRRVGNV 183
           +KIR   +V
Sbjct: 120 EKIRNEYSV 128


>gi|21227166|ref|NP_633088.1| formate hydrogenlyase subunit 7 [Methanosarcina mazei Go1]
 gi|20905501|gb|AAM30760.1| Formate hydrogenlyase subunit 7 [Methanosarcina mazei Go1]
          Length = 170

 Score =  171 bits (433), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 59/171 (34%), Positives = 93/171 (54%), Gaps = 2/171 (1%)

Query: 10  IISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL-ACCAVE 68
           +++  S     KV   F     E+   G  +      V +  + ++  +  G      +E
Sbjct: 1   MVNPLSLFLRPKVTETFEFRDEELEALGAQIKKEIPKV-FGHSLAIRELDSGSDNSTEME 59

Query: 69  MMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGS 128
           +     P YD+ERFG +  ASPR +DV++V G +T  MA A ++ Y+ MP P+YVI++G 
Sbjct: 60  ISNLGNPHYDVERFGISFVASPRHADVLLVTGAVTLNMAEAAKKTYEAMPYPKYVIAVGD 119

Query: 129 CANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
            A  GG Y  SY+V+ G D+I+PVD+ +PG PP+ + ++ GI  L KK R 
Sbjct: 120 DACDGGIYKGSYAVLGGVDKILPVDVKIPGNPPSPKEILQGIFALVKKARE 170


>gi|212223636|ref|YP_002306872.1| NADH dehydrogenase subunit B [Thermococcus onnurineus NA1]
 gi|212008593|gb|ACJ15975.1| nuoB NADH dehydrogenase I, subunit B [Thermococcus onnurineus NA1]
          Length = 190

 Score =  170 bits (432), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 50/136 (36%), Positives = 77/136 (56%)

Query: 43  VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL 102
            + L  +AR  SL  ++F   C  +EM      RYDLERFG  P  SPRQ D+ ++ G +
Sbjct: 7   FEPLFNYARKKSLWIVSFCTGCGGIEMPPLMTSRYDLERFGMIPDPSPRQYDLFLITGYV 66

Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162
           T K    +   Y+  P+P+YV++ GSC   GG Y  +Y+ ++  D+ +PVD+ + GC P 
Sbjct: 67  TPKTLKRIIITYEMAPDPKYVLAHGSCPLNGGIYWDAYNAIKHLDKYIPVDVVIAGCMPR 126

Query: 163 AEALIYGILLLQKKIR 178
            EA++ GI  + + I 
Sbjct: 127 PEAVMDGIQKIMEMIE 142


>gi|288932068|ref|YP_003436128.1| NADH-quinone oxidoreductase subunit beta [Ferroglobus placidus DSM
           10642]
 gi|288894316|gb|ADC65853.1| NADH-quinone oxidoreductase, B subunit [Ferroglobus placidus DSM
           10642]
          Length = 356

 Score =  170 bits (432), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 57/146 (39%), Positives = 80/146 (54%), Gaps = 5/146 (3%)

Query: 32  EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPR 91
           E  HKG     +  L  W    S+       ACC VE+  A    YD ER G       R
Sbjct: 6   EFLHKG----PLAPLKKWGTKFSIWPTHLVTACCGVELAHAFASGYDGERLGVLNFGMAR 61

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
           Q++ ++V G +T KMA AL+  Y+QMP+P++VI MG+C   GG +   Y++V+    +VP
Sbjct: 62  QTNCIVVEGAITRKMARALKITYEQMPDPKFVIVMGACGIKGGIFWNGYNMVKPF-EVVP 120

Query: 152 VDIYVPGCPPTAEALIYGILLLQKKI 177
           V  + PGCPPT E+L+     LQK+I
Sbjct: 121 VKYFAPGCPPTPESLLRCFRSLQKEI 146


>gi|323706313|ref|ZP_08117879.1| NADH ubiquinone oxidoreductase 20 kDa subunit
           [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323534365|gb|EGB24150.1| NADH ubiquinone oxidoreductase 20 kDa subunit
           [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 157

 Score =  170 bits (432), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 51/148 (34%), Positives = 84/148 (56%), Gaps = 7/148 (4%)

Query: 43  VDQLVTWARTGSLMWMTF---GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVA 99
           + + V  + + S   + +       C +E++    P YD+ERFG     +P+ +D++IV 
Sbjct: 3   LKEFVKKSFSKSPWVVHYDCGSCNGCDIEVLACMTPIYDMERFGMVNVGNPKHADILIVT 62

Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGC 159
           GT+  K    L+ VYD MP+P+ V++ G CA  GG +   Y+V+ G D+++PVD+YVPGC
Sbjct: 63  GTVNEKNKDVLKNVYDMMPDPKVVVAAGICACSGGIFRDCYNVLGGIDKVIPVDVYVPGC 122

Query: 160 PPTAEALIYGILL----LQKKIRRVGNV 183
           P   EA+I G+      L++K  R   +
Sbjct: 123 PAKPEAMIDGLYKAAQILKEKYSRKEVI 150


>gi|296242362|ref|YP_003649849.1| NADH-quinone oxidoreductase subunit B [Thermosphaera aggregans DSM
           11486]
 gi|296094946|gb|ADG90897.1| NADH-quinone oxidoreductase, B subunit [Thermosphaera aggregans DSM
           11486]
          Length = 155

 Score =  170 bits (431), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 57/134 (42%), Positives = 81/134 (60%), Gaps = 3/134 (2%)

Query: 52  TGSLMWMTF---GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108
             S   + F       C +E++ +  P YD ERFG     S R  D+++V G LT K   
Sbjct: 19  RYSPWLVHFNTGACNGCDIEVLASITPLYDPERFGVKLAPSIRHGDILVVTGALTKKAGE 78

Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168
            LRR+YDQMP P++V+++G+CA  GG ++ SYSV  G D+ VPV +Y+PGCPP  EA++ 
Sbjct: 79  RLRRLYDQMPNPKFVVAVGACAVDGGVFYKSYSVEGGADKAVPVAMYIPGCPPRPEAILD 138

Query: 169 GILLLQKKIRRVGN 182
           GI+ L KK+   G 
Sbjct: 139 GIVKLLKKLEESGE 152


>gi|304315647|ref|YP_003850792.1| NADH ubiquinone oxidoreductase 20 kDa subunit
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
 gi|302777149|gb|ADL67708.1| NADH ubiquinone oxidoreductase 20 kDa subunit
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
          Length = 157

 Score =  170 bits (431), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 51/148 (34%), Positives = 83/148 (56%), Gaps = 7/148 (4%)

Query: 43  VDQLVTWARTGSLMWMTF---GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVA 99
           + + V  + + S   + +       C +E++    P YD+ERFG     +P+ +D++IV 
Sbjct: 3   LKEFVKKSFSKSPWVVHYDCGSCNGCDIEVLACMTPIYDMERFGMVNVGNPKHADILIVT 62

Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGC 159
           GT+  K    L+ VYD MPEP+ V++ G CA  GG +   Y+V+ G D+++PVD+Y+PGC
Sbjct: 63  GTVNEKNKDVLKNVYDMMPEPKVVVAAGICACSGGIFRDCYNVLGGIDKVIPVDVYIPGC 122

Query: 160 PPTAEALIYGILL----LQKKIRRVGNV 183
           P   EA+I G+      L+ K  R   +
Sbjct: 123 PAKPEAMIDGLYKAAQILKDKYSRREVI 150


>gi|260462448|ref|ZP_05810655.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Mesorhizobium
           opportunistum WSM2075]
 gi|259031644|gb|EEW32913.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Mesorhizobium
           opportunistum WSM2075]
          Length = 179

 Score =  170 bits (431), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 52/137 (37%), Positives = 83/137 (60%), Gaps = 2/137 (1%)

Query: 50  ARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108
            R+ S+  +  G    C +EM   +   +D+ERFG    ASPR +DV++V G +T  M  
Sbjct: 42  GRSLSIRAVDAGSCNGCELEMHALNNAFHDIERFGIRFVASPRHADVLLVTGPVTKNMRE 101

Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168
           AL+R YD  P P++V+++G CA  GG +  SY+V+RG    +PVD+++PGCPP    ++ 
Sbjct: 102 ALKRTYDATPNPKWVVALGDCAGNGGCFAGSYAVMRGVSEALPVDLHIPGCPPPPIEILK 161

Query: 169 GILLLQKKI-RRVGNVK 184
           G+L L + +  + G V+
Sbjct: 162 GLLTLLEGVNSKTGAVR 178


>gi|86748390|ref|YP_484886.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Rhodopseudomonas
           palustris HaA2]
 gi|86571418|gb|ABD05975.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Rhodopseudomonas
           palustris HaA2]
          Length = 177

 Score =  170 bits (431), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 49/136 (36%), Positives = 80/136 (58%), Gaps = 1/136 (0%)

Query: 50  ARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108
            R+ S+  +  G    C +E+   +   YD+ERFG    ASPR +DV++V G +T+ M  
Sbjct: 42  GRSLSIREVDAGSCNGCELEIHALNNAYYDVERFGLRFVASPRHADVLMVTGPVTHNMRE 101

Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168
           ALR  YD +P P++V+++G CA  GG +  SY+V  G   ++PVD+++PGCPP+   ++ 
Sbjct: 102 ALRLTYDAVPGPKWVVAVGDCAKDGGCFAGSYAVAGGVSAVIPVDLHIPGCPPSPMQILR 161

Query: 169 GILLLQKKIRRVGNVK 184
           G+L L   +      +
Sbjct: 162 GLLALLDSVSERETSR 177


>gi|218883730|ref|YP_002428112.1| NADH-quinone oxidoreductase, B subunit [Desulfurococcus
           kamchatkensis 1221n]
 gi|218765346|gb|ACL10745.1| NADH-quinone oxidoreductase, B subunit [Desulfurococcus
           kamchatkensis 1221n]
          Length = 160

 Score =  170 bits (431), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 56/130 (43%), Positives = 80/130 (61%), Gaps = 3/130 (2%)

Query: 52  TGSLMWMTF---GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108
             S   + F       C +E++ A  P YD ERFG     S R  D+++V G +T K A 
Sbjct: 19  RYSPWLVHFNTGACNGCDIEVLAAITPLYDPERFGVKLAPSIRHGDILVVTGAVTKKAAE 78

Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168
            L+R+YDQMP P++VI++G+CA  GG +  SY V+ G D+ VPV +Y+PGCPP  EA++ 
Sbjct: 79  RLKRLYDQMPCPKFVIAVGACACTGGVFSKSYPVLAGADKAVPVSMYIPGCPPRPEAILD 138

Query: 169 GILLLQKKIR 178
           GI+ L KK+ 
Sbjct: 139 GIVKLLKKLE 148


>gi|242399279|ref|YP_002994703.1| Membrane-bound hydrogenase MBH 1, subunit Mbh1J (hydrogenase
           subunit) [Thermococcus sibiricus MM 739]
 gi|242265672|gb|ACS90354.1| Membrane-bound hydrogenase MBH 1, subunit Mbh1J (hydrogenase
           subunit) [Thermococcus sibiricus MM 739]
          Length = 156

 Score =  170 bits (431), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 50/157 (31%), Positives = 90/157 (57%), Gaps = 7/157 (4%)

Query: 33  ITHKGFLVTSVDQLVTW-ARTGSLMWMT---FGLACCAVEMMQASMPRYDLERFGFAPRA 88
           ++ +  L   + +L  +  R  S             C +E++ A  PRYD ERFG     
Sbjct: 1   MSEREILEKRISKLCKYLGR--SPWVFHVNSGSCNGCDIEIIAALTPRYDAERFGIKLVG 58

Query: 89  SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 148
           +PR +D+++V G +T++    ++ +Y+Q P+P+ V+++G+C  GG  +  S       DR
Sbjct: 59  TPRHADILLVTGPITDQSLERVKLIYEQTPDPKVVVAIGACPTGGSVFFESPFTNAPLDR 118

Query: 149 IVPVDIYVPGCPPTAEALIYGILL-LQKKIRRVGNVK 184
            +PVD+++PGCPP  EA++YG++L L+K I+++   K
Sbjct: 119 HIPVDVFIPGCPPRPEAVLYGVVLGLEKFIKKIEGEK 155


>gi|315231251|ref|YP_004071687.1| membrane bound hydrogenase NiFe-hydrogenase small subunit
           [Thermococcus barophilus MP]
 gi|315184279|gb|ADT84464.1| membrane bound hydrogenase NiFe-hydrogenase small subunit
           [Thermococcus barophilus MP]
          Length = 151

 Score =  170 bits (431), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 50/151 (33%), Positives = 87/151 (57%), Gaps = 5/151 (3%)

Query: 38  FLVTSVDQLVTWARTGSLMWMT---FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSD 94
            L   + +L  +    S             C +E++ A  PRYD ERFG     +PR +D
Sbjct: 1   MLEKRIAKLCKYIGR-SPWVFHVNSGSCNGCDIEIIAALTPRYDAERFGVKLVGTPRHAD 59

Query: 95  VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154
           +++V G +T++    ++ +Y+Q P+P+ VI++G+C  GG  ++ S       D+ +PVD+
Sbjct: 60  ILLVTGPITDQSLERVKLIYEQTPDPKVVIAVGACPTGGSVFYESPFTNAPLDKHIPVDV 119

Query: 155 YVPGCPPTAEALIYGILL-LQKKIRRVGNVK 184
           +VPGCPP  EA++YG++L L+K I+++   K
Sbjct: 120 FVPGCPPRPEAILYGVVLGLEKLIKKIEGEK 150


>gi|320101012|ref|YP_004176604.1| NADH-quinone oxidoreductase subunit B [Desulfurococcus mucosus DSM
           2162]
 gi|319753364|gb|ADV65122.1| NADH-quinone oxidoreductase, B subunit [Desulfurococcus mucosus DSM
           2162]
          Length = 161

 Score =  170 bits (430), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 53/130 (40%), Positives = 81/130 (62%), Gaps = 3/130 (2%)

Query: 52  TGSLMWMTF---GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108
             S   + F       C +E++ A  P YD ERFG     S R  D+++V G +T K   
Sbjct: 19  RYSPWLVHFNTGACNGCDIEVLAAITPLYDPERFGVRLAPSIRHGDILVVTGAVTKKSGE 78

Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168
            L+R+Y+QMP P++VI++G+CA  GG +  SY+V+ G D++VPV +Y+PGCPP  EA++ 
Sbjct: 79  RLKRLYEQMPCPKFVIAVGACACSGGVFSKSYTVLAGADKVVPVSMYIPGCPPRPEAILD 138

Query: 169 GILLLQKKIR 178
           GI+ L K++ 
Sbjct: 139 GIVKLLKRVE 148


>gi|169247665|gb|ACA51664.1| EchC [Thermoanaerobacterium saccharolyticum]
          Length = 157

 Score =  169 bits (429), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 51/148 (34%), Positives = 83/148 (56%), Gaps = 7/148 (4%)

Query: 43  VDQLVTWARTGSLMWMTF---GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVA 99
           + + V  + + S   + +       C +E++    P YD+ERFG     +P+ +D++IV 
Sbjct: 3   LKEFVKKSFSKSPWVVHYDCGSCNGCDIEVLACMTPIYDMERFGMVNVGNPKHADILIVT 62

Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGC 159
           GT+  K    L+ VYD MP+P+ V++ G CA  GG +   Y+V+ G D+++PVD+YVPGC
Sbjct: 63  GTVNEKNKDVLKNVYDMMPDPKVVVAAGICACSGGIFRDCYNVLGGIDKVIPVDVYVPGC 122

Query: 160 PPTAEALIYGILL----LQKKIRRVGNV 183
           P   EA+I G+      L+ K  R   +
Sbjct: 123 PAKPEAMIDGLYKAAQILKDKYSRREVI 150


>gi|254458925|ref|ZP_05072348.1| hydrogenase-4 component I [Campylobacterales bacterium GD 1]
 gi|207084196|gb|EDZ61485.1| hydrogenase-4 component I [Campylobacterales bacterium GD 1]
          Length = 184

 Score =  169 bits (429), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 53/139 (38%), Positives = 79/139 (56%), Gaps = 7/139 (5%)

Query: 51  RTGSLMWMTF---GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMA 107
           R  S   + +       C +E++ A  P+YDLERFG     +P+QSDV +V G +T +  
Sbjct: 8   RKKSPWILHYNAGSCNGCDIEILAALGPKYDLERFGVINTGNPKQSDVFLVTGPVTYRSR 67

Query: 108 SALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALI 167
             L  +Y QMPEP+ V++ GSC   GG +   Y+V  G DR +PVD+YVPGC  + E LI
Sbjct: 68  ERLVELYIQMPEPKVVVAFGSCTCTGGVFRDMYNVEDGIDRYIPVDVYVPGCAASPELLI 127

Query: 168 YGILL----LQKKIRRVGN 182
            G++     L++K + +  
Sbjct: 128 DGLVKALDILKEKTKEMEK 146


>gi|307299704|ref|ZP_07579498.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Thermotogales
           bacterium mesG1.Ag.4.2]
 gi|306914631|gb|EFN45023.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Thermotogales
           bacterium mesG1.Ag.4.2]
          Length = 179

 Score =  169 bits (428), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 49/139 (35%), Positives = 79/139 (56%)

Query: 41  TSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAG 100
            + +++    R+ SL  + +   C A+E+      R+D+ER G  P A+PRQ+D+M++ G
Sbjct: 6   KAWEKVANMLRSRSLWMLYYCTGCGAIELPPTMTSRFDMERLGIGPMATPRQADIMLITG 65

Query: 101 TLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCP 160
            L+ K    +   Y+QM  P+Y++  GSC   GG Y+ SY+ +   D  VPVD+Y+ GC 
Sbjct: 66  YLSTKTLRRVIYSYEQMQSPKYIVGFGSCTLNGGIYYDSYATINKLDLYVPVDLYLAGCM 125

Query: 161 PTAEALIYGILLLQKKIRR 179
           P  EA++ G   L  KI +
Sbjct: 126 PRPEAIVSGFTALMSKIDK 144


>gi|182414281|ref|YP_001819347.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Opitutus terrae
           PB90-1]
 gi|177841495|gb|ACB75747.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Opitutus terrae
           PB90-1]
          Length = 279

 Score =  169 bits (428), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 54/132 (40%), Positives = 80/132 (60%), Gaps = 1/132 (0%)

Query: 50  ARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108
            R+  +  +  G    C VE+   S P YDLERFG    ASPR +D+++V G +T  M  
Sbjct: 148 GRSLHIREVDAGSCNGCEVEINALSGPIYDLERFGIHLVASPRHADMLLVTGPVTRNMEL 207

Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168
           ALR+ YD  PEPR V+++G+C   GG +  +Y+     D ++PVD+Y+PGCPP   AL++
Sbjct: 208 ALRKTYDATPEPRLVVAVGACGCSGGMFGRNYATCGSVDSVLPVDVYIPGCPPNPFALLH 267

Query: 169 GILLLQKKIRRV 180
           GILL   ++ + 
Sbjct: 268 GILLAVGRLEKR 279


>gi|20093160|ref|NP_619235.1| hydrogenase-3, subunit G (HycG homolog) [Methanosarcina acetivorans
           C2A]
 gi|19918502|gb|AAM07715.1| hydrogenase-3, subunit G (HycG-like protein) [Methanosarcina
           acetivorans C2A]
          Length = 170

 Score =  168 bits (427), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 56/171 (32%), Positives = 95/171 (55%), Gaps = 2/171 (1%)

Query: 10  IISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL-ACCAVE 68
           +++  S     KV   F     E+   G  +      V +  + ++  +  G      +E
Sbjct: 1   MVNPLSLFLRPKVTETFKFRDEELEALGEEIKKEIPKV-FGHSLAIRELDSGSDNSTEIE 59

Query: 69  MMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGS 128
           +     P YD+ERFG +  ASPR +D+++V G +T  MA A+++ Y+ MP P++V+++G 
Sbjct: 60  ISNLGNPHYDVERFGISFVASPRHADILLVTGAVTLNMAEAVKKTYEAMPSPKFVVAVGD 119

Query: 129 CANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
            A  GG Y  SY+V+ G D+I+PVD+ +PG PP+ + ++ GIL L KK  +
Sbjct: 120 DACDGGIYKDSYAVLSGVDKILPVDMKIPGNPPSPKEILKGILALVKKASK 170


>gi|268324502|emb|CBH38090.1| F420H2-quinone oxidoreductase, subunit BCD fusion [uncultured
           archaeon]
          Length = 772

 Score =  168 bits (427), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 57/142 (40%), Positives = 79/142 (55%), Gaps = 1/142 (0%)

Query: 36  KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDV 95
           +      +     W+   SL    F  +CC VE+  A    YD ER G       RQS+ 
Sbjct: 10  RNLNSGILSPFRRWSSKWSLWPCHFITSCCGVELAHAFASGYDGERLGTLNLGISRQSNY 69

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
           +IV GT+T KMA AL+ V+ QMP+P++V  +G+C   GG +  SY++    D IVPVD +
Sbjct: 70  IIVEGTITRKMARALQFVWGQMPDPKFVNVIGACGQRGGIFWNSYNITHPSD-IVPVDAF 128

Query: 156 VPGCPPTAEALIYGILLLQKKI 177
           +PGCP T EAL+ G+   Q KI
Sbjct: 129 IPGCPITPEALLRGVRATQDKI 150


>gi|160902353|ref|YP_001567934.1| NADH dehydrogenase subunit B [Petrotoga mobilis SJ95]
 gi|160359997|gb|ABX31611.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Petrotoga mobilis
           SJ95]
          Length = 195

 Score =  168 bits (426), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 50/158 (31%), Positives = 83/158 (52%)

Query: 22  VDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLER 81
            +    +++         +T  +++    R  SL  + +   C AVE+      R+D+ER
Sbjct: 3   NEEKIEQMNIFEEDLNDTITFWEKIKNIFRGKSLWMLHYCTGCGAVELPPTMTARFDMER 62

Query: 82  FGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYS 141
            G  P A+PRQ+DV+++ G L+ K    +   Y+QM  P+Y++  GSC   GG Y+ SY+
Sbjct: 63  LGMGPMATPRQADVLLITGYLSVKTLRRVIYTYEQMMTPKYLVGFGSCTINGGIYYDSYA 122

Query: 142 VVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           V+   D  +PVD+YV GC P  EA++     L+  I +
Sbjct: 123 VINRLDYYLPVDLYVAGCMPRPEAIMNTFKTLENMITK 160


>gi|269104123|ref|ZP_06156819.1| formate hydrogenlyase subunit 7 [Photobacterium damselae subsp.
           damselae CIP 102761]
 gi|268160763|gb|EEZ39260.1| formate hydrogenlyase subunit 7 [Photobacterium damselae subsp.
           damselae CIP 102761]
          Length = 287

 Score =  168 bits (426), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 56/141 (39%), Positives = 81/141 (57%), Gaps = 6/141 (4%)

Query: 44  DQLVTWARTGSLMWMT--FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGT 101
           D L+   R  + ++     G   C +E+  A+ P +D ERFG    ASPR +D+++  G 
Sbjct: 29  DALIKQIRRSAYVYRVDCGGCNACEIEIFAATTPVFDAERFGIKVVASPRHADILLFTGA 88

Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP 161
           +T  M +   R Y+  P+P+ VIS G+C   GG +H  Y V  G D+IVPVD+Y+PGCPP
Sbjct: 89  VTRAMRAPALRAYEAAPDPKIVISYGACGCDGGIFHDLYCVWGGTDKIVPVDVYIPGCPP 148

Query: 162 TAEALIYGIL----LLQKKIR 178
           T  A IYG      LL +K++
Sbjct: 149 TPAATIYGFAVALGLLDQKLK 169


>gi|326202175|ref|ZP_08192045.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Clostridium
           papyrosolvens DSM 2782]
 gi|325987970|gb|EGD48796.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Clostridium
           papyrosolvens DSM 2782]
          Length = 266

 Score =  168 bits (426), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 56/166 (33%), Positives = 88/166 (53%), Gaps = 4/166 (2%)

Query: 8   QKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCA 66
           QK      +  L  +D + +    E+  K        +   + R+ ++  +  G    C 
Sbjct: 99  QKSRDLLRATPLYVIDEEINGTDYELIGKKLNEKVAKK---FGRSLNIREVDAGSCNGCD 155

Query: 67  VEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISM 126
            E+   + P  D+ERFG    ASPR +D+++V G ++  M  AL + Y+  P P+ V++ 
Sbjct: 156 YEIQALNGPYNDIERFGIHFVASPRHADMLLVTGCVSRNMEEALVKTYNATPSPKLVVAA 215

Query: 127 GSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILL 172
           G+CA  GG +  SY+   G D I+PVD+Y+PGCPP  +ALIYGIL 
Sbjct: 216 GACACSGGLFKDSYAGRNGIDTILPVDVYIPGCPPRPQALIYGILK 261


>gi|289522403|ref|ZP_06439257.1| carbon monoxide-induced hydrogenase, CooL subunit [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
 gi|289504239|gb|EFD25403.1| carbon monoxide-induced hydrogenase, CooL subunit [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
          Length = 160

 Score =  168 bits (425), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 51/133 (38%), Positives = 74/133 (55%), Gaps = 3/133 (2%)

Query: 53  GSLMWMTF---GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASA 109
            S+            C +E++    PRYD+ERFG     +PR +D ++V G +T  M   
Sbjct: 15  RSIWAFHCNSGSCNGCDIEIVALLTPRYDIERFGMKLVGTPRHADALLVTGPVTKYMTDR 74

Query: 110 LRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYG 169
           LRRVY QMP P+ VI +G+C   G  ++ SY++    D+I+PVD+YV GCPP  EA+I G
Sbjct: 75  LRRVYAQMPNPKVVIVVGNCGASGDVFYKSYNLDGPVDQILPVDVYVHGCPPRPEAIIDG 134

Query: 170 ILLLQKKIRRVGN 182
           +     K+    N
Sbjct: 135 VTKAIAKLEEKRN 147


>gi|315230620|ref|YP_004071056.1| NADH-ubiquinone oxidoreductase subunit B [Thermococcus barophilus
           MP]
 gi|315183648|gb|ADT83833.1| NADH-ubiquinone oxidoreductase chain B [Thermococcus barophilus MP]
          Length = 190

 Score =  168 bits (425), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 49/136 (36%), Positives = 77/136 (56%)

Query: 43  VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL 102
            + L  +AR  SL  + F   C  +EM      RYDLERFG  P  +PR +D+ ++ G +
Sbjct: 7   FEPLFEFARKRSLWIVAFCTGCGGIEMPPLMTSRYDLERFGMMPNPAPRMADLFLITGYV 66

Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162
           T K    +   Y+  P+P+YV++ GSC   GG Y  +Y+ ++  D+ +PVD+Y+ GC P 
Sbjct: 67  TPKTLKRIIITYEMQPDPKYVMAHGSCPLNGGIYWDAYNAIKHLDKYIPVDVYIAGCMPR 126

Query: 163 AEALIYGILLLQKKIR 178
            EA++ GI  + + I 
Sbjct: 127 PEAVMDGIKKIMEMIE 142


>gi|282163150|ref|YP_003355535.1| Ech hydrogenase subunit C [Methanocella paludicola SANAE]
 gi|282155464|dbj|BAI60552.1| Ech hydrogenase subunit C [Methanocella paludicola SANAE]
          Length = 156

 Score =  167 bits (424), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 56/142 (39%), Positives = 84/142 (59%), Gaps = 7/142 (4%)

Query: 46  LVTWARTGSLMWMT---FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL 102
           L   +R  S   +     G   C +E++    PRYD+ RFG     +P+ +DVM+V G +
Sbjct: 3   LTEISRKKSPWVIHVGTGGCNGCDLEILACLTPRYDVSRFGVMSTGNPKHADVMLVVGPV 62

Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162
           T K    ++ +YDQMP+P+ VIS+G+CA+ GG Y   Y    G D++VPVD+YVPGC   
Sbjct: 63  TIKYKEIIKNLYDQMPDPKVVISVGTCASTGGIYQGCYGHCGGVDKVVPVDVYVPGCNVR 122

Query: 163 AEALIYGILL----LQKKIRRV 180
            EA+I G++L    L +K R++
Sbjct: 123 PEAVIDGLVLALDILNEKERKI 144


>gi|288940086|ref|YP_003442326.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Allochromatium
           vinosum DSM 180]
 gi|288895458|gb|ADC61294.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Allochromatium
           vinosum DSM 180]
          Length = 154

 Score =  167 bits (424), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 41/136 (30%), Positives = 76/136 (55%), Gaps = 3/136 (2%)

Query: 52  TGSLMWMTFG---LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108
             S   + +       C +E++    P YD+ERFG     +P+ +D+ +V G++  +   
Sbjct: 5   KKSPWVLHYAATSCNGCDIELLACLTPTYDVERFGIVNTGNPKHADIFLVTGSVNEESRK 64

Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168
            +  +Y QMP+P+ V+++G+CA  GG +  +Y+V  G D+++PVD+YVPGC    E++I 
Sbjct: 65  VVENLYAQMPDPKVVVAIGACALSGGIFRDAYNVYGGIDQVLPVDVYVPGCAARPESIID 124

Query: 169 GILLLQKKIRRVGNVK 184
           GI+     + +    +
Sbjct: 125 GIVQALDILEQRAKAR 140


>gi|307265664|ref|ZP_07547217.1| NADH dehydrogenase (quinone) [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306919308|gb|EFN49529.1| NADH dehydrogenase (quinone) [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 155

 Score =  167 bits (424), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 51/149 (34%), Positives = 89/149 (59%), Gaps = 7/149 (4%)

Query: 43  VDQLVTWARTGSLMWMTF---GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVA 99
           + + V  +   S   + +       C +E++    P YD+ERFG     +P+ +D+++V 
Sbjct: 3   LKEFVEKSFKKSPWVLHYNCSSCNGCDIEILACMTPLYDMERFGMVNVGNPKHADILVVT 62

Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGC 159
           GT+ +K    L+ +YDQMPEP+ V+++G CA  GG +  +Y+V+ G D+++PVD+YVPGC
Sbjct: 63  GTVNHKNKEVLKNIYDQMPEPKVVVAVGVCAATGGIFREAYNVLGGIDKVIPVDVYVPGC 122

Query: 160 PPTAEALIYGILL----LQKKIRRVGNVK 184
           P   EA+I G+      L++K  ++G  +
Sbjct: 123 PAKPEAIIDGLYKAAEILKEKYEKMGKAE 151


>gi|119871850|ref|YP_929857.1| NADH-quinone oxidoreductase, B subunit [Pyrobaculum islandicum DSM
           4184]
 gi|119673258|gb|ABL87514.1| NADH-quinone oxidoreductase, B subunit [Pyrobaculum islandicum DSM
           4184]
 gi|164472821|dbj|BAF32936.2| NADH-ubiquinone oxidoreductase subunit [Pyrobaculum islandicum DSM
           4184]
          Length = 183

 Score =  167 bits (423), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 58/130 (44%), Positives = 82/130 (63%), Gaps = 1/130 (0%)

Query: 49  WARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108
           W    SL  +    +CC VE+   S P +D ER+G  P  + RQS+V++V GT+T KMA 
Sbjct: 21  WGVRWSLWPVHLVTSCCGVEVAHTSGPGFDAERWGVLPFHTMRQSNVILVEGTITKKMAK 80

Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168
            L+ VY+QMPEP+YVI+MG+CA  GG +  SY VV+    +    +Y+ GCPPT EA+I 
Sbjct: 81  VLKMVYEQMPEPKYVIAMGACAVRGGLFWNSYHVVQVDTVVPVD-VYIAGCPPTPEAVIR 139

Query: 169 GILLLQKKIR 178
             ++L  KI+
Sbjct: 140 AFIMLHNKIK 149


>gi|307353199|ref|YP_003894250.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanoplanus
           petrolearius DSM 11571]
 gi|307156432|gb|ADN35812.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanoplanus
           petrolearius DSM 11571]
          Length = 171

 Score =  167 bits (423), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 55/172 (31%), Positives = 92/172 (53%), Gaps = 9/172 (5%)

Query: 9   KIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL-ACCAV 67
           K+I    +  +E  D+DF R  S       L   ++ +  + R+ ++  +  G      +
Sbjct: 7   KLIQKPLTERIEVNDSDFERYGS------MLKAEINSV--FKRSIAIREVDCGSDNAAEI 58

Query: 68  EMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMG 127
           E+   S P YD+ERFG    ASPR +DV+ V G +T+ M  AL++ YD  P P++V+++G
Sbjct: 59  EINNLSSPYYDVERFGVTFVASPRHADVLFVTGAVTHNMRYALKKTYDATPSPKFVVAIG 118

Query: 128 SCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
             A  GG +  SY++      +VPVD+ +PG PP    +I  +L L K+ ++
Sbjct: 119 DEACNGGIFKDSYAICGPVSSVVPVDLEIPGNPPEPVDMIKSLLALMKEAKK 170


>gi|126465551|ref|YP_001040660.1| NADH-quinone oxidoreductase, B subunit [Staphylothermus marinus F1]
 gi|126014374|gb|ABN69752.1| NADH-quinone oxidoreductase, B subunit [Staphylothermus marinus F1]
          Length = 179

 Score =  167 bits (422), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 59/138 (42%), Positives = 80/138 (57%)

Query: 46  LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNK 105
              W R+ S+  + +  AC A+E+    M   D ER+G  P  SPRQ+DV+++ G +T K
Sbjct: 11  FAEWVRSRSIWMIHYCSACGAIELPPNMMAPLDAERWGIMPAPSPRQADVLVIMGYVTKK 70

Query: 106 MASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEA 165
               L R+Y QMPEPRYV+   +C   GG Y  SYS V+  D  +PVD++VPGC P AE 
Sbjct: 71  TLKVLMRLYHQMPEPRYVMVGCNCPATGGLYWDSYSTVKAVDEFLPVDVWVPGCMPRAED 130

Query: 166 LIYGILLLQKKIRRVGNV 183
            + G L L+KKI     V
Sbjct: 131 WLQGFLKLRKKISEGRIV 148


>gi|269216332|ref|ZP_06160186.1| hydrogenase-4 component I [Slackia exigua ATCC 700122]
 gi|269130591|gb|EEZ61669.1| hydrogenase-4 component I [Slackia exigua ATCC 700122]
          Length = 261

 Score =  167 bits (422), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 53/172 (30%), Positives = 84/172 (48%), Gaps = 6/172 (3%)

Query: 19  LEKVDADFSRISSEI-THKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPR 76
           LE+V      I + I   +         L    R+  +  +  G    C +E+     P 
Sbjct: 5   LEQVPERLQAIPTRIELDESIQKAKAALLNDIKRSVYIYRVDCGGCNACEIEIFATITPV 64

Query: 77  YDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY 136
           +D ERFG     SPR +D+++  G +T  M     R Y+  P+P+ V+S G+C   GG +
Sbjct: 65  FDAERFGIKNTPSPRHADILVFTGAVTRAMRLPAMRAYEGAPDPKLVVSYGACGCTGGIF 124

Query: 137 HYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKKIRRVGNVK 184
           H +Y V  G D+I+PVD+Y+PGCPP+    IYG      +L +K+     ++
Sbjct: 125 HDNYCVWGGTDQILPVDVYIPGCPPSPAQTIYGFAMTLGMLGQKLHHKETIE 176


>gi|323139190|ref|ZP_08074246.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methylocystis sp.
           ATCC 49242]
 gi|322395573|gb|EFX98118.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methylocystis sp.
           ATCC 49242]
          Length = 166

 Score =  167 bits (422), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 59/167 (35%), Positives = 90/167 (53%), Gaps = 12/167 (7%)

Query: 8   QKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCA 66
           Q++++     S EK+ A+     S    +              R+ S+  +  G    C 
Sbjct: 2   QRVLTEPPPESDEKMLAELGETLSTSARRAL-----------GRSLSVRQVDAGSCNGCE 50

Query: 67  VEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISM 126
           +E+   S P YDLERFG    ASPR +DV++V G +T  M  AL+R YD  P P++V+++
Sbjct: 51  LEIHALSNPYYDLERFGLRFVASPRHADVLMVTGPVTKNMCEALQRTYDATPNPKWVVAV 110

Query: 127 GSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLL 173
           G CA  GG +  SY+ V    ++VPVD++V GCPP   AL+ G++ L
Sbjct: 111 GDCAFDGGVFAGSYACVGAVTKVVPVDLHVRGCPPDPIALLKGLIAL 157


>gi|326202291|ref|ZP_08192160.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Clostridium
           papyrosolvens DSM 2782]
 gi|325987409|gb|EGD48236.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Clostridium
           papyrosolvens DSM 2782]
          Length = 149

 Score =  166 bits (421), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 43/135 (31%), Positives = 79/135 (58%), Gaps = 3/135 (2%)

Query: 46  LVTWARTGSLMWMTF---GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL 102
           +++ +R  S   M +       C +E +    P YD ER G     +P+ +D+++V G++
Sbjct: 3   IISKSRKKSPWIMHYDCTSCNGCDIETLACLTPLYDAERLGIINVGNPKHADILLVTGSV 62

Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162
             +    L+ +Y+QMP+P+ V+++G+CA  GG +   Y+V+ G + ++PVD++VPGC   
Sbjct: 63  NKRNEIVLKNIYNQMPDPKCVVAIGACACTGGIFRECYNVLGGVENVIPVDVFVPGCCAR 122

Query: 163 AEALIYGILLLQKKI 177
            EA+I GI+    K+
Sbjct: 123 PEAIIDGIVQAIGKL 137


>gi|219853280|ref|YP_002467712.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanosphaerula
           palustris E1-9c]
 gi|219547539|gb|ACL17989.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanosphaerula
           palustris E1-9c]
          Length = 147

 Score =  166 bits (421), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 45/135 (33%), Positives = 79/135 (58%), Gaps = 7/135 (5%)

Query: 52  TGSLMWMTF---GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108
             S   + +       C +E++    P YDLERFG     +P+ +D+ +V G +  +  +
Sbjct: 5   KKSPWIIHYDASSCNGCDIEVLACLTPMYDLERFGIINTGNPKHADIFLVTGGVNEQNRA 64

Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168
            ++ +YDQMPEP+ VI++G CA  GG +   Y+++ G D+++PVD+Y+PGCP   E +I 
Sbjct: 65  VIKNIYDQMPEPKVVIALGVCATSGGVFRECYNIIGGIDKVIPVDVYLPGCPVRPEQIID 124

Query: 169 GILL----LQKKIRR 179
            ++     L++K R+
Sbjct: 125 SVVKSLSILEEKQRQ 139


>gi|242399881|ref|YP_002995306.1| Membrane-bound NADP+-reducing complex MBX, subunit MbxJ
           (dehydrogenase subunit) [Thermococcus sibiricus MM 739]
 gi|242266275|gb|ACS90957.1| Membrane-bound NADP+-reducing complex MBX, subunit MbxJ
           (dehydrogenase subunit) [Thermococcus sibiricus MM 739]
          Length = 193

 Score =  166 bits (421), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 47/134 (35%), Positives = 76/134 (56%)

Query: 44  DQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLT 103
           + L+ +AR  S+  + F   C  +EM      RYDLERFG  P  +PR +D+ ++ G +T
Sbjct: 8   EPLINFARKRSMWIVAFCTGCGGIEMPPLMTSRYDLERFGMMPNPAPRMADLFLITGYVT 67

Query: 104 NKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTA 163
            K    +   Y+  P+P+YV++ GSC   GG Y   Y+ ++  D+ +PVD+ + GC P  
Sbjct: 68  PKTLKRIIITYEMQPDPKYVLAHGSCPLNGGIYWDGYNAIKHLDKYLPVDVAIAGCMPRP 127

Query: 164 EALIYGILLLQKKI 177
           EA++ GI  + + I
Sbjct: 128 EAVMDGIKKIMELI 141


>gi|182415924|ref|YP_001820990.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Opitutus terrae
           PB90-1]
 gi|177843138|gb|ACB77390.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Opitutus terrae
           PB90-1]
          Length = 338

 Score =  166 bits (421), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 42/134 (31%), Positives = 73/134 (54%), Gaps = 3/134 (2%)

Query: 52  TGSLMWMTF---GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108
             S   + +       C +E +    P YD+ER G     +P+ +D+ +V G +  +   
Sbjct: 5   RKSPWIIHYDASSCNGCDIETLACLTPLYDVERLGVINTGNPKHADIFLVTGAVNEQSKE 64

Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168
            +R +Y Q+PEP+ V+++G CA+ GG +   Y++  G DR++PVD+YVPGC    EA+I 
Sbjct: 65  VIRNIYHQLPEPKVVVAIGVCASSGGIFRDCYNIAGGVDRVIPVDVYVPGCAARPEAIID 124

Query: 169 GILLLQKKIRRVGN 182
           G++     + R  +
Sbjct: 125 GVVQALGVLERKQS 138


>gi|160879875|ref|YP_001558843.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Clostridium
           phytofermentans ISDg]
 gi|160428541|gb|ABX42104.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Clostridium
           phytofermentans ISDg]
          Length = 144

 Score =  166 bits (420), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 43/134 (32%), Positives = 80/134 (59%), Gaps = 7/134 (5%)

Query: 52  TGSLMWMTF---GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108
             S   + +       C +E++    P YD+ERFG     +P+ +D++++ G++  +   
Sbjct: 5   KKSPWIIHYDGSSCNGCDIEVLACLTPLYDVERFGIINTGNPKHADILLITGSVNEQNIP 64

Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168
            ++++Y+QM EP+ V+++G CAN GG +   Y+V  G D+++PVD+YVPGC    EA+I 
Sbjct: 65  VVKQIYEQMAEPKIVVAVGICANSGGIFAECYNVSGGVDKVLPVDVYVPGCAARPEAIID 124

Query: 169 GILL----LQKKIR 178
           G++     L++K +
Sbjct: 125 GVVKGLAILEEKQK 138


>gi|284162674|ref|YP_003401297.1| NADH-quinone oxidoreductase subunit beta [Archaeoglobus profundus
           DSM 5631]
 gi|284012671|gb|ADB58624.1| NADH-quinone oxidoreductase, B subunit [Archaeoglobus profundus DSM
           5631]
          Length = 709

 Score =  166 bits (420), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 58/133 (43%), Positives = 74/133 (55%), Gaps = 1/133 (0%)

Query: 46  LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNK 105
           L  W    SL  +    ACC VE+  A    YD ER G       RQ++++IV G +T K
Sbjct: 2   LKEWGTKWSLWPVHLVTACCGVELAHAYACGYDAERIGSLNYGICRQTNLIIVEGAITRK 61

Query: 106 MASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEA 165
           MA  LR  ++QMP P++VI MG+C   GG +  SY +VR  D +        GCPPT EA
Sbjct: 62  MARVLRITWEQMPNPKFVIVMGACGIKGGLFKNSYHMVRPWDVVPVDVFVP-GCPPTPEA 120

Query: 166 LIYGILLLQKKIR 178
           LI GI+ LQKKI 
Sbjct: 121 LIRGIVALQKKIE 133


>gi|220929108|ref|YP_002506017.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Clostridium
           cellulolyticum H10]
 gi|219999436|gb|ACL76037.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Clostridium
           cellulolyticum H10]
          Length = 266

 Score =  166 bits (420), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 58/166 (34%), Positives = 87/166 (52%), Gaps = 4/166 (2%)

Query: 8   QKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCA 66
           QK      +  L   D D + I  E+  K        +   + R+  +  +  G    C 
Sbjct: 99  QKSRELLRAAPLYVGDKDVNGIDYELIGKKLNQKIGKK---FGRSLHIREVDAGSCNGCD 155

Query: 67  VEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISM 126
            E+   + P  D+ERFG    ASPR +D+++V G ++  M  AL + Y+  P P+ V++ 
Sbjct: 156 YEVQALNGPYNDIERFGIHFVASPRHADMLLVTGCVSRNMEEALVKTYNATPSPKLVVAA 215

Query: 127 GSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILL 172
           G+CA  GG +  SY+   G D I+PVD+Y+PGCPP  +ALIYGIL 
Sbjct: 216 GACACSGGLFKDSYAGRNGIDTILPVDVYIPGCPPRPQALIYGILK 261


>gi|302670765|ref|YP_003830725.1| ech hydrogenase subunit C EchC [Butyrivibrio proteoclasticus B316]
 gi|302395238|gb|ADL34143.1| ech hydrogenase subunit C EchC [Butyrivibrio proteoclasticus B316]
          Length = 228

 Score =  166 bits (420), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 45/138 (32%), Positives = 82/138 (59%), Gaps = 7/138 (5%)

Query: 52  TGSLMWMTF---GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108
           + S   + +       C +E++    P YD+ERFG     +P+ +DV+++ G +  + A 
Sbjct: 4   SKSPWVLHYDGSSCNGCDIEVLATMTPLYDVERFGIINTGNPKHADVLLLTGGVNAQTAP 63

Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168
            +R++Y+ MP+P+ V++ G CA  GG +   Y+++ G D++VPVD+YVPGC    EALI 
Sbjct: 64  VIRQLYNMMPDPKVVVACGICACDGGIFKECYNILGGADKVVPVDVYVPGCAVRPEALIE 123

Query: 169 GILL----LQKKIRRVGN 182
           G++     L++K +++  
Sbjct: 124 GVVKAVGILEEKRKKLKE 141


>gi|330448643|ref|ZP_08312291.1| hydrogenase 3 and formate hydrogenlyase complex, HycG subunit
           [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328492834|dbj|GAA06788.1| hydrogenase 3 and formate hydrogenlyase complex, HycG subunit
           [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 277

 Score =  166 bits (420), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 56/141 (39%), Positives = 81/141 (57%), Gaps = 6/141 (4%)

Query: 44  DQLVTWARTGSLMWMT--FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGT 101
           D L+   R  + ++     G   C +E+  A+ P +D ERFG    ASPR +D+++  G 
Sbjct: 29  DALIKQIRRSAYVYRVDCGGCNACEIEIFAATTPVFDAERFGIKVVASPRHADILLFTGA 88

Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP 161
           +T  M +   R Y+  P+P+ VIS G+C   GG +H  Y V  G D+IVPVD+Y+PGCPP
Sbjct: 89  VTRAMRAPALRAYEAAPDPKIVISYGACGCDGGIFHDLYCVWGGTDKIVPVDVYIPGCPP 148

Query: 162 TAEALIYGIL----LLQKKIR 178
           T  A IYG      LL +K++
Sbjct: 149 TPAATIYGFAVALGLLDQKLK 169


>gi|325290171|ref|YP_004266352.1| ech hydrogenase subunit C [Syntrophobotulus glycolicus DSM 8271]
 gi|324965572|gb|ADY56351.1| ech hydrogenase subunit C [Syntrophobotulus glycolicus DSM 8271]
          Length = 145

 Score =  166 bits (420), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 46/138 (33%), Positives = 82/138 (59%), Gaps = 7/138 (5%)

Query: 53  GSLMWMTF---GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASA 109
            S   + +       C +E++    P YD+ERFG     +P+ +D+ ++ G++  +  + 
Sbjct: 6   KSPWLVHYDASSCNGCDIEVLACLTPLYDVERFGVLNIGNPKHADIFVITGSVNEQNKTV 65

Query: 110 LRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYG 169
           ++ +YDQMPEP+ V+++G+CA  GG +   Y+V  G D+++PVD+YVPGC    EA+I G
Sbjct: 66  IKNIYDQMPEPKVVVAIGACATSGGVFRQCYNVQGGVDKVIPVDVYVPGCAARPEAIIDG 125

Query: 170 ILL----LQKKIRRVGNV 183
           ++     L+ K + +G V
Sbjct: 126 VVQGLAVLESKYKNMGKV 143


>gi|303241790|ref|ZP_07328286.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Acetivibrio
           cellulolyticus CD2]
 gi|302590671|gb|EFL60423.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Acetivibrio
           cellulolyticus CD2]
          Length = 154

 Score =  165 bits (419), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 44/140 (31%), Positives = 80/140 (57%), Gaps = 7/140 (5%)

Query: 52  TGSLMWMTF---GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108
             S   + +       C +E++    P YD ERFG     +P+ +D+ +V G++  +   
Sbjct: 5   AKSPWILHYDASSCNGCDIEVLACLTPMYDAERFGIINTGNPKHADIFVVTGSVNEQNID 64

Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168
            ++ +Y+QMP+P+ V+++G CA  GG +   Y++  G D+++PVD+YV GC    EA+I 
Sbjct: 65  VIKNLYNQMPDPKVVVAVGICAATGGIFSECYNIQGGIDKVLPVDVYVAGCAARPEAIID 124

Query: 169 GILL----LQKKIRRVGNVK 184
           GI+     L++K +++ N K
Sbjct: 125 GIVQAVGILEEKHKKMKNGK 144


>gi|91978313|ref|YP_570972.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Rhodopseudomonas
           palustris BisB5]
 gi|91684769|gb|ABE41071.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Rhodopseudomonas
           palustris BisB5]
          Length = 177

 Score =  165 bits (419), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 47/129 (36%), Positives = 78/129 (60%), Gaps = 1/129 (0%)

Query: 50  ARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108
            R+ ++  +  G    C +E+   S   YD+ERFG    ASPR +DV++V G +T+ M  
Sbjct: 42  GRSLAIREVDAGSCNGCELEIHALSNAYYDVERFGLRFVASPRHADVLMVTGPVTHNMRE 101

Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168
           ALR  Y+ +P P++V++ G CA  GG +  SY++  G   ++PVD+++PGCPP+   ++ 
Sbjct: 102 ALRLTYEAVPGPKWVVATGDCAKDGGCFAGSYAITGGVSAVIPVDLHIPGCPPSPVQILR 161

Query: 169 GILLLQKKI 177
           G+L L   +
Sbjct: 162 GLLALLDSV 170


>gi|296446945|ref|ZP_06888880.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methylosinus
           trichosporium OB3b]
 gi|296255512|gb|EFH02604.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methylosinus
           trichosporium OB3b]
          Length = 169

 Score =  165 bits (419), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 49/127 (38%), Positives = 77/127 (60%), Gaps = 1/127 (0%)

Query: 50  ARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108
            R+ S+  +  G    C +E+   +   YDLERFG    ASPR +DV++V G +T  M  
Sbjct: 42  GRSLSIREVDAGSCNACELEIHALNNAFYDLERFGLRFVASPRHADVLLVTGPMTKNMRE 101

Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168
           A+ R Y   P+P++V+++G CA  GG Y  SY+   G D+++PVD+++ GCPP   AL+ 
Sbjct: 102 AVERTYAATPDPKWVVAVGDCACSGGLYAESYACEGGVDKVIPVDLHIRGCPPEPVALLE 161

Query: 169 GILLLQK 175
           G++ L +
Sbjct: 162 GLIALVE 168


>gi|307352628|ref|YP_003893679.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanoplanus
           petrolearius DSM 11571]
 gi|307155861|gb|ADN35241.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanoplanus
           petrolearius DSM 11571]
          Length = 146

 Score =  165 bits (419), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 43/134 (32%), Positives = 75/134 (55%), Gaps = 3/134 (2%)

Query: 52  TGSLMWMTF---GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108
           T S   + +       C +E++    P YD+ERFG     +P+ +DV +V G++  +   
Sbjct: 5   TKSPWIIHYDASSCNGCDIEVLACLTPLYDVERFGIINTGNPKHADVFLVTGSVNEQNKP 64

Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168
            ++ +Y QMP+P  V+++G+CA  GG +   Y+V  G D+++PVD+YVPGC    EA+I 
Sbjct: 65  VIKNIYKQMPKPNVVVAIGACALSGGVFRECYNVAGGVDKLIPVDVYVPGCAAKPEAIID 124

Query: 169 GILLLQKKIRRVGN 182
           G++     + +   
Sbjct: 125 GVVKALGILEQKRE 138


>gi|218660809|ref|ZP_03516739.1| NADH-ubiquinone oxidoreductase protein, chain B [Rhizobium etli
           IE4771]
          Length = 118

 Score =  165 bits (418), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 67/108 (62%), Positives = 87/108 (80%), Gaps = 1/108 (0%)

Query: 76  RYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY 135
           RYDL+RFG   R SPRQSDVMI+AGT+T K A  +RR+YDQMPEPR+VI+MG+CA  GG 
Sbjct: 1   RYDLDRFGVVFRPSPRQSDVMIIAGTVTRKFAPVVRRLYDQMPEPRWVIAMGTCAISGGV 60

Query: 136 YHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           Y+ +Y+VV+G +  VPVD++VPGCPP  EAL++G LLLQ+KI+R   +
Sbjct: 61  YN-TYAVVQGSETFVPVDVHVPGCPPRPEALMHGFLLLQEKIKRSRAL 107


>gi|209964717|ref|YP_002297632.1| hydrogenase-4 Fe-S subunit I [Rhodospirillum centenum SW]
 gi|209958183|gb|ACI98819.1| hydrogenase-4 Fe-S subunit I [Rhodospirillum centenum SW]
          Length = 196

 Score =  165 bits (418), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 48/127 (37%), Positives = 81/127 (63%), Gaps = 1/127 (0%)

Query: 50  ARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108
            R+ ++  +  G    C +E+   + P YDLERFGF+  ASPR +DV++V G +T  M  
Sbjct: 42  GRSLAIRQVDAGSCNACEMEIHALNNPVYDLERFGFSFVASPRHADVLLVTGPVTTNMRE 101

Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168
           AL + ++  P+P++V+++G CA  GG +  SY+VV G +++VPVD+ +PGCPP    ++ 
Sbjct: 102 ALLKTWEATPDPKWVVALGQCAIDGGPFADSYAVVGGVEKVVPVDLMIPGCPPRPVDILA 161

Query: 169 GILLLQK 175
            ++ L +
Sbjct: 162 ALVALIE 168


>gi|288575153|ref|ZP_06393510.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Dethiosulfovibrio
           peptidovorans DSM 11002]
 gi|288570894|gb|EFC92451.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Dethiosulfovibrio
           peptidovorans DSM 11002]
          Length = 151

 Score =  165 bits (418), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 58/139 (41%), Positives = 83/139 (59%), Gaps = 10/139 (7%)

Query: 53  GSLMWM---TFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASA 109
            SL      T     C +E++    PRYD+ERFG     +PR +DV++V G +T  M   
Sbjct: 12  KSLWVFSTNTGSCNGCDIEIVSTVSPRYDIERFGMKLTGTPRHADVLLVTGPVTRFMKEK 71

Query: 110 LRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYG 169
           L R+Y Q+P+P+ VI++G+CA  G  Y  SY++V   DRI+PVD+YV GCPP  EA+I G
Sbjct: 72  LERIYAQIPDPKVVIAVGNCACSGDVYFKSYNLVGPVDRIIPVDVYVHGCPPRPEAIIEG 131

Query: 170 ----ILLLQKK---IRRVG 181
               +L L+ K   +R+ G
Sbjct: 132 AAKAVLKLEAKRAELRKAG 150


>gi|220930729|ref|YP_002507638.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Clostridium
           cellulolyticum H10]
 gi|220001057|gb|ACL77658.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Clostridium
           cellulolyticum H10]
          Length = 149

 Score =  165 bits (418), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 42/135 (31%), Positives = 79/135 (58%), Gaps = 3/135 (2%)

Query: 46  LVTWARTGSLMWMTF---GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL 102
           +++ +R  S   + +       C +E +    P YD ER G     +P+ +D+++V G++
Sbjct: 3   IISKSRKKSPWIIHYDCTSCNGCDIETLACLTPMYDAERLGIINVGNPKHADILLVTGSV 62

Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162
             +    L+ +Y+QMP+P+ V+++G+CA  GG +   Y+V+ G + ++PVD++VPGC   
Sbjct: 63  NKRNELVLKNIYNQMPDPKCVVAIGACACTGGIFKECYNVLGGVENVIPVDVFVPGCCAR 122

Query: 163 AEALIYGILLLQKKI 177
            EA+I GI+    K+
Sbjct: 123 PEAIIDGIVQAIGKL 137


>gi|147919863|ref|YP_686386.1| ech hydrogenase, subunit C [uncultured methanogenic archaeon RC-I]
 gi|110621782|emb|CAJ37060.1| Ech hydrogenase, subunit C [uncultured methanogenic archaeon RC-I]
          Length = 157

 Score =  165 bits (418), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 51/146 (34%), Positives = 81/146 (55%), Gaps = 7/146 (4%)

Query: 46  LVTWARTGSLMWMT---FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL 102
            V  +R  S   +     G   C +E++    PRYD+ RFG     +P+ +DVM+V G +
Sbjct: 3   FVELSRKKSPWVIHVNTGGCNGCDLEILSCLTPRYDISRFGVYSTGNPKHADVMLVVGPV 62

Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162
           T K    +  +Y+QMP+P+ V+++GSCA+ G  Y   Y      D+++PVD+YVPGC   
Sbjct: 63  TLKYKEIITNLYNQMPDPKVVMAVGSCASTGAIYQGCYGTCGSLDKVIPVDVYVPGCNCR 122

Query: 163 AEALIYGILL----LQKKIRRVGNVK 184
            E +I G++L    L +K R++   K
Sbjct: 123 PEGIIDGLVLALDILNEKERKILEEK 148


>gi|126178312|ref|YP_001046277.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Methanoculleus
           marisnigri JR1]
 gi|125861106|gb|ABN56295.1| ech hydrogenase subunit C [Methanoculleus marisnigri JR1]
          Length = 160

 Score =  165 bits (417), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 41/133 (30%), Positives = 74/133 (55%), Gaps = 3/133 (2%)

Query: 52  TGSLMWMTF---GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108
             S   + +       C +E++    P YD+ERFG     +P+ +D++++ G +  +   
Sbjct: 5   KRSPWILHYDASSCNGCDIEVLACLTPLYDVERFGMINTGNPKHADILLITGGINTQNRE 64

Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168
            +  +Y+QMPEP+ VI++G CA  GG +   Y++V G D+++PVD+YVPGC    E +I 
Sbjct: 65  VVENIYEQMPEPKVVIAVGVCAATGGIFRECYNIVGGIDKVIPVDVYVPGCAARPEQIID 124

Query: 169 GILLLQKKIRRVG 181
           G++     + +  
Sbjct: 125 GVVTALSILEKKR 137


>gi|115522982|ref|YP_779893.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Rhodopseudomonas
           palustris BisA53]
 gi|115516929|gb|ABJ04913.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Rhodopseudomonas
           palustris BisA53]
          Length = 173

 Score =  165 bits (417), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 47/121 (38%), Positives = 74/121 (61%), Gaps = 1/121 (0%)

Query: 50  ARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108
            R+ ++  +  G    C +E+   +   YD+ERFG    ASPR +DV++V G +T  MA 
Sbjct: 42  GRSLAIREVDAGSCNGCELEIHALNNAYYDIERFGLRFVASPRHADVLLVTGPVTKNMAD 101

Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168
           AL+  YD  P P++V++ G CA  GG +  SY+VV G  +++PVD+++PGCPP    ++ 
Sbjct: 102 ALKTTYDATPSPKWVVACGDCARDGGCFAGSYAVVGGVSQVIPVDLHIPGCPPPPLQILR 161

Query: 169 G 169
           G
Sbjct: 162 G 162


>gi|294102253|ref|YP_003554111.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Aminobacterium
           colombiense DSM 12261]
 gi|293617233|gb|ADE57387.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Aminobacterium
           colombiense DSM 12261]
          Length = 153

 Score =  165 bits (417), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 53/131 (40%), Positives = 78/131 (59%), Gaps = 7/131 (5%)

Query: 53  GSLMWMTF---GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASA 109
            SL  MT        C +E++    PRYD+ERFG     +PR +DV++V G +T  M   
Sbjct: 12  KSLWVMTCNSGSCNGCDIEIVATISPRYDIERFGMKLVGTPRHADVLVVTGPVTKYMKDR 71

Query: 110 LRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYG 169
           L R+Y+Q+P+P+ V+ +G+C   G  ++ SYS+    D I+PVD+YV GCPP  EA+I G
Sbjct: 72  LLRIYNQIPDPKVVVVVGNCGASGDVFYKSYSLEGPVDNIIPVDVYVHGCPPRPEAIIEG 131

Query: 170 ----ILLLQKK 176
               +L L+ K
Sbjct: 132 VAKAVLKLESK 142


>gi|270263099|ref|ZP_06191369.1| hypothetical protein SOD_d01150 [Serratia odorifera 4Rx13]
 gi|270042787|gb|EFA15881.1| hypothetical protein SOD_d01150 [Serratia odorifera 4Rx13]
          Length = 265

 Score =  165 bits (417), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 57/173 (32%), Positives = 86/173 (49%), Gaps = 6/173 (3%)

Query: 15  SSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQAS 73
           +   +   DA+   +   +      + +   L    R+  +  +  G    C +E+  A 
Sbjct: 2   NQTLIGPRDANGQPVPITLDDSIAQLKTT-LLKDIRRSAYVYRVDCGGCNGCEIEIFAAI 60

Query: 74  MPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGG 133
            P +D ERFG     SPR +D+++  G +T  M     R +   P+P+  IS G+C N G
Sbjct: 61  SPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRIPAIRAWQASPDPKICISYGACGNSG 120

Query: 134 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILL----LQKKIRRVGN 182
           G +H  Y V  G DRIVPVD+Y+PGCPPT  A IYG  +    L++KI R  +
Sbjct: 121 GIFHDLYCVWGGTDRIVPVDVYIPGCPPTPAATIYGFAMALGLLEQKIHRQQH 173


>gi|90407577|ref|ZP_01215758.1| hydrogenase-4 component I [Psychromonas sp. CNPT3]
 gi|90311280|gb|EAS39384.1| hydrogenase-4 component I [Psychromonas sp. CNPT3]
          Length = 261

 Score =  164 bits (416), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 54/138 (39%), Positives = 78/138 (56%), Gaps = 5/138 (3%)

Query: 46  LVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTN 104
           L    R+  +  +  G    C +E+  A+ P +D ERFG    ASPR +D+++  G +T 
Sbjct: 32  LKEIKRSAYVYRVDCGGCNGCEIEIFAATTPVFDTERFGIKIVASPRHADILLFTGAVTR 91

Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164
            M     R Y+  P+P+ VIS G+C   GG +H  Y V  G D+IVPVD+Y+PGCPPT  
Sbjct: 92  AMRMPALRAYEAAPDPKIVISYGACGCDGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPA 151

Query: 165 ALIYGILL----LQKKIR 178
           A IYG  +    L +K++
Sbjct: 152 ATIYGFAMALGLLDQKLK 169


>gi|27381455|ref|NP_772984.1| hydrogenase-3 subunit G [Bradyrhizobium japonicum USDA 110]
 gi|27354623|dbj|BAC51609.1| hycG [Bradyrhizobium japonicum USDA 110]
          Length = 177

 Score =  164 bits (416), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 49/129 (37%), Positives = 78/129 (60%), Gaps = 1/129 (0%)

Query: 52  TGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASAL 110
           + S+  +  G    C +E+   +   YD+ERFG    ASPR +DV++V G +T  M  AL
Sbjct: 44  SLSIREVDAGSCNGCELEIHALNNAYYDVERFGLRFVASPRHADVLMVTGPVTKNMRDAL 103

Query: 111 RRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGI 170
            R Y   P+P++V+++G CA  GG +  SY+VV G  ++VPVD+++PGCPP    ++ G+
Sbjct: 104 ERTYHATPDPKWVVAVGDCARDGGCFAGSYAVVGGVSQVVPVDLHIPGCPPPPTTILRGL 163

Query: 171 LLLQKKIRR 179
           L L  +  +
Sbjct: 164 LALLDQAAK 172


>gi|90578223|ref|ZP_01234034.1| hydrogenase-4 component I [Vibrio angustum S14]
 gi|90441309|gb|EAS66489.1| hydrogenase-4 component I [Vibrio angustum S14]
          Length = 277

 Score =  164 bits (416), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 56/141 (39%), Positives = 81/141 (57%), Gaps = 6/141 (4%)

Query: 44  DQLVTWARTGSLMWMT--FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGT 101
           D L+   R  + ++     G   C +E+  A+ P +D ERFG    ASPR +D+++  G 
Sbjct: 29  DALIKQIRRSAYVYRVDCGGCNACEIEIFAATTPVFDTERFGIKVVASPRHADILLFTGA 88

Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP 161
           +T  M +   R Y+  P+P+ VIS G+C   GG +H  Y V  G D+IVPVD+Y+PGCPP
Sbjct: 89  VTRAMRAPALRAYEAAPDPKIVISYGACGCDGGIFHDLYCVWGGTDKIVPVDVYIPGCPP 148

Query: 162 TAEALIYGIL----LLQKKIR 178
           T  A IYG      LL +K++
Sbjct: 149 TPAATIYGFAVALGLLDQKLK 169


>gi|20806654|ref|NP_621825.1| NADH:ubiquinone oxidoreductase 20 kD subunit and related Fe-S
           oxidoreductase [Thermoanaerobacter tengcongensis MB4]
 gi|20515103|gb|AAM23429.1| NADH:ubiquinone oxidoreductase 20 kD subunit and related Fe-S
           oxidoreductases [Thermoanaerobacter tengcongensis MB4]
          Length = 155

 Score =  164 bits (416), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 48/149 (32%), Positives = 89/149 (59%), Gaps = 7/149 (4%)

Query: 43  VDQLVTWARTGSLMWMTF---GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVA 99
           + + +  +   S   + +       C +E++    P YD+ERFG     +P+ +D+++V 
Sbjct: 3   LKEFIEKSFKKSPWVLHYNASSCNGCDIEILACMTPIYDMERFGMMNVGNPKHADILVVT 62

Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGC 159
           G++  +    L+ +YDQMPEP+ V+++G CA  GG +  +Y+V+ G D+++PVD+YVPGC
Sbjct: 63  GSVNTRNKDVLKNIYDQMPEPKVVVAVGVCAATGGVFRDTYNVLGGVDKVIPVDVYVPGC 122

Query: 160 PPTAEALIYGILL----LQKKIRRVGNVK 184
           P   EA+I G+      L++K +++G  +
Sbjct: 123 PAKPEAIIDGLYKATEILKEKYKKMGKAE 151


>gi|20808124|ref|NP_623295.1| Ni,Fe-hydrogenase III small subunit [Thermoanaerobacter
           tengcongensis MB4]
 gi|254479096|ref|ZP_05092449.1| NADH ubiquinone oxidoreductase, 20 Kd subunit family
           [Carboxydibrachium pacificum DSM 12653]
 gi|20516711|gb|AAM24899.1| Ni,Fe-hydrogenase III small subunit [Thermoanaerobacter
           tengcongensis MB4]
 gi|214034978|gb|EEB75699.1| NADH ubiquinone oxidoreductase, 20 Kd subunit family
           [Carboxydibrachium pacificum DSM 12653]
          Length = 247

 Score =  164 bits (416), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 53/151 (35%), Positives = 80/151 (52%), Gaps = 7/151 (4%)

Query: 39  LVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           L   +  ++   R+  L  +  G    C +E+  A  P YD ERFG    +SPR +D+++
Sbjct: 10  LKAKLKNVIK--RSAYLYRVDCGGCNGCEIEIFAAISPVYDPERFGIKIVSSPRHADILL 67

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
             G +T  M     R Y   P+P+ V++ G+C   GG +H  Y V  G D+  PVD+Y+P
Sbjct: 68  FTGPMTRAMRLPAIRAYKAAPDPKIVVAYGACGCSGGIFHDCYCVWGGIDKFFPVDVYIP 127

Query: 158 GCPPTAEALIYGIL----LLQKKIRRVGNVK 184
           GCPPT  A +YG+     LL +KI+    V+
Sbjct: 128 GCPPTPAATLYGLAVALDLLHQKIKGEQFVE 158


>gi|90410736|ref|ZP_01218751.1| hydrogenase-4 component I [Photobacterium profundum 3TCK]
 gi|90328367|gb|EAS44665.1| hydrogenase-4 component I [Photobacterium profundum 3TCK]
          Length = 277

 Score =  164 bits (416), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 52/129 (40%), Positives = 75/129 (58%), Gaps = 2/129 (1%)

Query: 44  DQLVTWARTGSLMWMT--FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGT 101
           D L+   R  + ++     G   C +E+  A+ P +D ERFG    ASPR +D+++  G 
Sbjct: 29  DALIKQIRRSAYVYRVDCGGCNGCEIEIFAATTPVFDTERFGIKVVASPRHADILLFTGA 88

Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP 161
           +T  M +   R Y+  P+P+ V+S G+C   GG +H  Y V  G D+IVPVD+Y+PGCPP
Sbjct: 89  VTRAMRAPALRAYEAAPDPKIVVSYGACGCDGGIFHDLYCVWGGTDKIVPVDVYIPGCPP 148

Query: 162 TAEALIYGI 170
           T  A IYG 
Sbjct: 149 TPAATIYGF 157


>gi|312136850|ref|YP_004004187.1| NADH ubiquinone oxidoreductase 20 kda subunit [Methanothermus
           fervidus DSM 2088]
 gi|311224569|gb|ADP77425.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanothermus
           fervidus DSM 2088]
          Length = 157

 Score =  164 bits (415), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 48/132 (36%), Positives = 81/132 (61%), Gaps = 7/132 (5%)

Query: 44  DQLVTWARTG----SLMWMTF---GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVM 96
           +++  +        S+    F   G   C +E + A  P YD+ER G    +SPR +D++
Sbjct: 3   NKITNFFTKNILRKSMWLFHFNSGGCNGCDIEFVAALTPLYDVERMGIQLVSSPRHADIL 62

Query: 97  IVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV 156
           +V G +T +  S+L+ +Y+QMP P+YVI++G+CA  G  +  SY+V+ G D+++PVD+Y+
Sbjct: 63  VVTGPVTLQSLSSLKLIYEQMPSPKYVIAVGNCACDGCVFKDSYNVLEGVDKVLPVDVYI 122

Query: 157 PGCPPTAEALIY 168
           PGCPP+  A+  
Sbjct: 123 PGCPPSPRAIFR 134


>gi|295099918|emb|CBK89007.1| ech hydrogenase subunit C [Eubacterium cylindroides T2-87]
          Length = 143

 Score =  164 bits (415), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 40/134 (29%), Positives = 77/134 (57%), Gaps = 3/134 (2%)

Query: 52  TGSLMWMT---FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108
             S   +         C +E++  +MPR+D+ERFG     +P  +D++++ G +  + A 
Sbjct: 5   KKSPWMLHHDASSCNGCDIEVLACTMPRFDIERFGIINTGNPFHADILLITGGVNAQSAE 64

Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168
            ++++Y QMP P+ V+++G CA  GG +   Y+++ G D+++PVD+YVPGC    +++I 
Sbjct: 65  VVKQIYSQMPHPKVVVAVGICACTGGVFKDCYNILGGVDKVIPVDVYVPGCAARPQSIID 124

Query: 169 GILLLQKKIRRVGN 182
           G+L     + +   
Sbjct: 125 GVLKAVDILEKKRE 138


>gi|326389233|ref|ZP_08210801.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Thermoanaerobacter
           ethanolicus JW 200]
 gi|325994596|gb|EGD53020.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Thermoanaerobacter
           ethanolicus JW 200]
          Length = 155

 Score =  163 bits (414), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 49/149 (32%), Positives = 88/149 (59%), Gaps = 7/149 (4%)

Query: 43  VDQLVTWARTGSLMWMTF---GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVA 99
           + + V  +   S   + +       C +E++    P YD+ERFG     +P+ +D+++V 
Sbjct: 3   LKEFVEKSFKKSPWVLHYNCSSCNGCDIEILACMTPLYDMERFGMVNVGNPKHADILVVT 62

Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGC 159
           GT+  +    L+ +YDQMP+P+ V+++G CA  GG +  +Y+V+ G D+++PVD+YVPGC
Sbjct: 63  GTVNTRNKEVLKNIYDQMPDPKVVVAVGVCAATGGVFREAYNVIGGIDKVIPVDVYVPGC 122

Query: 160 PPTAEALIYGILL----LQKKIRRVGNVK 184
           P   EA+I G+      L++K  ++G  +
Sbjct: 123 PAKPEAIIDGLYKAAEILKEKYEKMGKAE 151


>gi|125975501|ref|YP_001039411.1| ech hydrogenase subunit C [Clostridium thermocellum ATCC 27405]
 gi|256004211|ref|ZP_05429194.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Clostridium
           thermocellum DSM 2360]
 gi|281419466|ref|ZP_06250480.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Clostridium
           thermocellum JW20]
 gi|125715726|gb|ABN54218.1| ech hydrogenase subunit C [Clostridium thermocellum ATCC 27405]
 gi|255991801|gb|EEU01900.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Clostridium
           thermocellum DSM 2360]
 gi|281406872|gb|EFB37136.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Clostridium
           thermocellum JW20]
 gi|316939621|gb|ADU73655.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Clostridium
           thermocellum DSM 1313]
          Length = 145

 Score =  163 bits (414), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 41/134 (30%), Positives = 76/134 (56%), Gaps = 3/134 (2%)

Query: 52  TGSLMWMTF---GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108
             S   + +       C +E++    P YD+ERFG     +P+ +D++++ G++  +  S
Sbjct: 5   KKSPWILHYDGSSCNGCDIEVLACLTPLYDIERFGVINTGNPKHADILLITGSINEQNKS 64

Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168
            ++++Y+QM +P+ V+++G CA  GG +   Y+V  G D+I+PVD+YVPGC    EA+I 
Sbjct: 65  VVKQLYEQMADPKVVVAVGICAATGGIFSECYNVSGGVDKIIPVDVYVPGCAARPEAIID 124

Query: 169 GILLLQKKIRRVGN 182
           G++     +     
Sbjct: 125 GVVKALGILEERQK 138


>gi|258646992|ref|ZP_05734461.1| NADH dehydrogenase I, B subunit [Dialister invisus DSM 15470]
 gi|260404433|gb|EEW97980.1| NADH dehydrogenase I, B subunit [Dialister invisus DSM 15470]
          Length = 156

 Score =  163 bits (414), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 49/136 (36%), Positives = 82/136 (60%), Gaps = 6/136 (4%)

Query: 47  VTWARTGSLMWMTFGLAC--CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTN 104
           + + R  + +    G +C  C +E++   MP YD+ERFG      P+ +DV +V G +  
Sbjct: 1   MAYIRKSAWLIHYDGSSCNGCDIEVLACLMPLYDVERFGIINTGDPKHADVFLVTGGVNV 60

Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164
           +    +R++Y+QMPEP+ V+++G+CA  GG +   Y+++ G D  VPVD+YVPGC    E
Sbjct: 61  QNLPVVRQIYEQMPEPKVVVAVGTCACTGGIFKDCYNMIGGMDHAVPVDVYVPGCAARPE 120

Query: 165 ALIYGILL----LQKK 176
           A+I G++     L++K
Sbjct: 121 AIIDGVVKGLGILEEK 136


>gi|315180292|gb|ADT87206.1| hydrogenase-4 component I [Vibrio furnissii NCTC 11218]
          Length = 272

 Score =  163 bits (414), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 52/122 (42%), Positives = 74/122 (60%), Gaps = 4/122 (3%)

Query: 60  FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119
            G   C +E+  A+ P YD ERFG    ASPR +D+++  G +T  M +   R Y+  P+
Sbjct: 47  GGCNACEIEIFAATTPVYDTERFGIKVVASPRHADILLFTGAVTRAMRAPALRAYEAAPD 106

Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQK 175
           P+ V+S G+C   GG +H  Y V  G D+IVPVD+Y+PGCPPT  A +YG      LL++
Sbjct: 107 PKIVVSYGACGCDGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAVALGLLEQ 166

Query: 176 KI 177
           K+
Sbjct: 167 KM 168


>gi|152992439|ref|YP_001358160.1| NADH-quinone oxidoreductase, chain B [Sulfurovum sp. NBC37-1]
 gi|151424300|dbj|BAF71803.1| NADH-quinone oxidoreductase, chain B [Sulfurovum sp. NBC37-1]
          Length = 140

 Score =  163 bits (413), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 53/120 (44%), Positives = 84/120 (70%)

Query: 59  TFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMP 118
            F   CC++EM  A  PRYD ER+G+ P  +PRQ+DV+++ G ++ K+  AL R Y QMP
Sbjct: 3   HFCTGCCSLEMAAAMGPRYDWERYGYMPTPTPRQADVLMITGLVSKKILPALLRTYAQMP 62

Query: 119 EPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           EP+YV+++G+C+  GG Y+ S SV++    I+P D+++ GCPP  EA+I G+  +++KI+
Sbjct: 63  EPKYVVALGACSFDGGPYNDSLSVIKNPTEILPADVFIAGCPPKPEAIIEGLEQVKQKIK 122


>gi|269140240|ref|YP_003296941.1| hydrogenase activity [Edwardsiella tarda EIB202]
 gi|267985901|gb|ACY85730.1| hydrogenase activity [Edwardsiella tarda EIB202]
 gi|304560070|gb|ADM42734.1| Formate hydrogenlyase subunit 7 [Edwardsiella tarda FL6-60]
          Length = 273

 Score =  163 bits (413), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 58/178 (32%), Positives = 90/178 (50%), Gaps = 6/178 (3%)

Query: 6   VNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFG-LAC 64
           ++Q I +  +   +   DA+   +   +  +   +     L    R+  +  +  G    
Sbjct: 1   MSQIITTPPAGALIGPRDANGQPVPITLDAQAARLKQT-LLKDIRRSAYVYRVDCGGCNG 59

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E+  A  P +D ERFG    ASPR +D+++  G +T  M     R Y   P+P+ VI
Sbjct: 60  CEIEIFAAISPLFDAERFGIKVVASPRHADILLFTGAVTRAMRIPAIRAYQSAPDPKIVI 119

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKKIR 178
           S G+C   GG +H  Y V  G D+IVPVD+Y+PGCPPT  A +YG      LL +K++
Sbjct: 120 SYGACGCSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAVALGLLDQKLK 177


>gi|330829825|ref|YP_004392777.1| formate hydrogenlyase subunit 7 [Aeromonas veronii B565]
 gi|328804961|gb|AEB50160.1| Formate hydrogenlyase subunit 7 [Aeromonas veronii B565]
          Length = 271

 Score =  163 bits (413), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 53/150 (35%), Positives = 81/150 (54%), Gaps = 7/150 (4%)

Query: 40  VTSVDQ--LVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVM 96
           +T + +  L    R+  +  +  G    C +E+     P +D ERFG    ASPR +D++
Sbjct: 27  ITKLKKTLLKDIRRSAYVYRVDCGGCNACEIEIFATITPLFDAERFGIKVVASPRHADIL 86

Query: 97  IVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV 156
           +  G +T  M     R Y+  P+P+  I+ G+C   GG +H  Y V  G D+IVPVD+Y+
Sbjct: 87  LFTGAVTRAMRVPALRAYEAAPDPKICIAYGACGCDGGIFHDLYCVWGGTDKIVPVDVYI 146

Query: 157 PGCPPTAEALIYGIL----LLQKKIRRVGN 182
           PGCPPT  A IYG      LL++K++   +
Sbjct: 147 PGCPPTPAATIYGFAVALGLLEQKLKATSH 176


>gi|295401603|ref|ZP_06811571.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|294976370|gb|EFG51980.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Geobacillus
           thermoglucosidasius C56-YS93]
          Length = 247

 Score =  163 bits (413), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 49/151 (32%), Positives = 81/151 (53%), Gaps = 7/151 (4%)

Query: 39  LVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           L   +  ++   R+  +  +  G    C +E+  A  P +D ERFG     +PR +D+++
Sbjct: 10  LKAKLKNVIK--RSVYVYRVDCGGCNGCEIEIFSAISPTFDAERFGIKVVPTPRHADILL 67

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           + G +T  M     R Y   P+P+ V++ G+C+  GG +H  Y V  G +   PVD+Y+P
Sbjct: 68  ITGPMTRAMRLPAIRAYQAAPDPKIVVAYGACSCSGGIFHDCYGVWGGAESAFPVDVYIP 127

Query: 158 GCPPTAEALIYGILL----LQKKIRRVGNVK 184
           GCPPT  A +YG+ +    LQ+KI+    V+
Sbjct: 128 GCPPTPAATLYGLAMALDLLQQKIKGEQFVE 158


>gi|189218530|ref|YP_001939171.1| formate hydrogenlyase subunit 7 [Methylacidiphilum infernorum V4]
 gi|161075799|gb|ABX56647.1| putative formate hydrogenlyase [Methylacidiphilum infernorum V4]
 gi|189185388|gb|ACD82573.1| Formate hydrogenlyase subunit 7 [Methylacidiphilum infernorum V4]
          Length = 177

 Score =  163 bits (413), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 50/126 (39%), Positives = 78/126 (61%), Gaps = 2/126 (1%)

Query: 50  ARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108
            R+ ++  +  G    C +E+   + P YD+ERFG    ASPR +D+++V G +T  M  
Sbjct: 49  GRSLAIREVDAGSCNGCELEIHALNNPFYDIERFGIRFVASPRHADLLLVTGPVTKNMVE 108

Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRG-CDRIVPVDIYVPGCPPTAEALI 167
           AL+R YD MP P++V++ G CA G G +  SY+VV+   + I+PVD+ + GCPPT   L+
Sbjct: 109 ALKRTYDCMPHPKWVVAAGDCALGRGVFSQSYAVVKEGVEAIIPVDLRIDGCPPTPLDLL 168

Query: 168 YGILLL 173
            G++ L
Sbjct: 169 RGLVYL 174


>gi|312110881|ref|YP_003989197.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Geobacillus sp.
           Y4.1MC1]
 gi|311215982|gb|ADP74586.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Geobacillus sp.
           Y4.1MC1]
          Length = 247

 Score =  163 bits (412), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 50/151 (33%), Positives = 81/151 (53%), Gaps = 7/151 (4%)

Query: 39  LVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           L   +  ++   R+  +  +  G    C +E+  A  P +D ERFG     +PR +D+++
Sbjct: 10  LKAKLKNVIK--RSVYVYRVDCGGCNGCEIEIFSAISPTFDAERFGIKVVPTPRHADILL 67

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           + G +T  M     R Y   P+P+ V++ G+C+  GG +H  Y V  G +   PVD+Y+P
Sbjct: 68  ITGPMTRAMRLPAIRAYQAAPDPKIVVAYGACSCSGGIFHDCYGVWGGAESAFPVDVYIP 127

Query: 158 GCPPTAEALIYGIL----LLQKKIRRVGNVK 184
           GCPPT  A +YG+     LLQ+KI+    V+
Sbjct: 128 GCPPTPAATLYGLAIALDLLQQKIKGEQFVE 158


>gi|12001974|gb|AAG43130.1|AF060512_1 My017 protein [Homo sapiens]
          Length = 214

 Score =  163 bits (412), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 78/193 (40%), Positives = 104/193 (53%), Gaps = 27/193 (13%)

Query: 6   VNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACC 65
           V+Q + +   S +   +    +      +   ++V  +D LV WAR  SL  MTFGLACC
Sbjct: 30  VHQSVATDGPSSTQPALPKARAVAPKPSSRGEYVVAKLDDLVNWARRSSLWPMTFGLACC 89

Query: 66  AVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVIS 125
           AVEMM  + PRYD++RFG   RASPRQSDVMIVAGTLTNKMA ALR+     P P     
Sbjct: 90  AVEMMHMAAPRYDMDRFGVVFRASPRQSDVMIVAGTLTNKMAPALRKS---PPRP----- 141

Query: 126 MGSCANGGGYYHYSYSVVRGCDRIVPVDI--------------YVPGCPPTAEALIYGIL 171
                + G      +  +R   R++P+ +                P  P TAEAL+YGIL
Sbjct: 142 -----DAGAALRGLHGELRQRGRLLPLFLLGGEGLRPHRARGHLHPRLPTTAEALLYGIL 196

Query: 172 LLQKKIRRVGNVK 184
            LQ+KI+R   ++
Sbjct: 197 QLQRKIKRERRLQ 209


>gi|260768583|ref|ZP_05877517.1| formate hydrogenlyase subunit 7 [Vibrio furnissii CIP 102972]
 gi|260616613|gb|EEX41798.1| formate hydrogenlyase subunit 7 [Vibrio furnissii CIP 102972]
          Length = 272

 Score =  163 bits (412), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 52/122 (42%), Positives = 74/122 (60%), Gaps = 4/122 (3%)

Query: 60  FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119
            G   C +E+  A+ P YD ERFG    ASPR +D+++  G +T  M +   R Y+  P+
Sbjct: 47  GGCNACEIEIFAATTPVYDTERFGIKVVASPRHADILLFTGAVTRAMRAPALRAYEAAPD 106

Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQK 175
           P+ V+S G+C   GG +H  Y V  G D+IVPVD+Y+PGCPPT  A +YG      LL++
Sbjct: 107 PKIVVSYGACGCDGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAVALGLLEQ 166

Query: 176 KI 177
           K+
Sbjct: 167 KM 168


>gi|73669936|ref|YP_305951.1| ech hydrogenase subunit C [Methanosarcina barkeri str. Fusaro]
 gi|72397098|gb|AAZ71371.1| ech hydrogenase subunit C [Methanosarcina barkeri str. Fusaro]
          Length = 163

 Score =  163 bits (412), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 52/140 (37%), Positives = 83/140 (59%), Gaps = 7/140 (5%)

Query: 52  TGSLMWMTF---GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108
             S   +         C +E++    P YD ERFG     +P+Q+D+M+V G +  K  +
Sbjct: 4   AKSPWIVHVNCNSCNGCDIEVIACLTPLYDAERFGVLNIGTPKQADIMVVTGAVNYKNVN 63

Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168
            L  +Y+Q+P+P+ VI++G+CA+ GG +H  Y+V+ G D+++PVDIYVPGC P  EA++ 
Sbjct: 64  VLINIYNQIPDPKVVIAVGACASTGGIFHSCYNVIGGVDQVIPVDIYVPGCCPRPEAILD 123

Query: 169 GILL----LQKKIRRVGNVK 184
           GI+     L+ K +R    K
Sbjct: 124 GIIAALPILEDKKKRNIKGK 143


>gi|73748664|ref|YP_307903.1| hydrogenase, group 4, EchC subunit [Dehalococcoides sp. CBDB1]
 gi|147669423|ref|YP_001214241.1| ech hydrogenase subunit C [Dehalococcoides sp. BAV1]
 gi|289432690|ref|YP_003462563.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Dehalococcoides sp.
           GT]
 gi|73660380|emb|CAI82987.1| hydrogenase, group 4, EchC subunit [Dehalococcoides sp. CBDB1]
 gi|146270371|gb|ABQ17363.1| ech hydrogenase subunit C [Dehalococcoides sp. BAV1]
 gi|288946410|gb|ADC74107.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Dehalococcoides sp.
           GT]
          Length = 155

 Score =  162 bits (411), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 48/131 (36%), Positives = 77/131 (58%), Gaps = 3/131 (2%)

Query: 45  QLVTWARTGSLMWMTF---GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGT 101
             VT ++  S   + F       C +E++    P YD+ERFG     +P+ SDV++V G 
Sbjct: 2   DFVTKSQIKSPWLLHFDCGSCNGCDIEILACLTPLYDVERFGIVNMGNPKHSDVLLVTGP 61

Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP 161
              +    LR +Y+QMPEP+ VI +G+C   GG +H   +++ G D+++PVD+YVPGC  
Sbjct: 62  ANKRNYRVLRNLYEQMPEPKVVIVIGTCGCSGGVFHNCPNILGGVDKVIPVDVYVPGCAA 121

Query: 162 TAEALIYGILL 172
             EA+I G+++
Sbjct: 122 RPEAIIDGVVM 132


>gi|305664299|ref|YP_003860587.1| ech hydrogenase subunit C [Ignisphaera aggregans DSM 17230]
 gi|304378868|gb|ADM28707.1| ech hydrogenase subunit C [Ignisphaera aggregans DSM 17230]
          Length = 145

 Score =  162 bits (411), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 56/135 (41%), Positives = 83/135 (61%), Gaps = 3/135 (2%)

Query: 52  TGSLMWMTF---GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108
             S   + F       C +E++ A  P YD ER+G     S R  D++IV G +T K A 
Sbjct: 6   RYSPWLVHFNTGACNGCDIEVLAAITPLYDPERYGIKLAPSIRHGDILIVTGVVTKKAAE 65

Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168
            L+R+Y QMP  +YV+++G+CA  GG +  SYSVV G ++++PVD+YVPGCPP  E ++ 
Sbjct: 66  RLKRLYSQMPNLKYVVAVGACAYDGGVFKGSYSVVGGVNKVIPVDVYVPGCPPRPEEILR 125

Query: 169 GILLLQKKIRRVGNV 183
            +LLL ++ + V NV
Sbjct: 126 ALLLLLQREKGVENV 140


>gi|256826557|ref|YP_003150516.1| Ni,Fe-hydrogenase III small subunit [Cryptobacterium curtum DSM
           15641]
 gi|256582700|gb|ACU93834.1| Ni,Fe-hydrogenase III small subunit [Cryptobacterium curtum DSM
           15641]
          Length = 283

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 48/169 (28%), Positives = 81/169 (47%), Gaps = 1/169 (0%)

Query: 5   TVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFG-LA 63
           +    I+ G  + S         ++  ++  +         L    R+  +  +  G   
Sbjct: 11  STQSSIMQGYETRSTATAQKLQYQLEPKVLDQKIAEAKAALLNDIKRSVYIYRVDCGGCN 70

Query: 64  CCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYV 123
            C +E+     P +D ERFG    ASPR +D+++  G +T  M     R Y+  P+P+ +
Sbjct: 71  GCEIEIFGTLTPVFDAERFGIKNMASPRHADILVYTGAVTRAMRLPALRAYEAAPDPKLI 130

Query: 124 ISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILL 172
           +S G+C   GG +H +Y V  G D++ PVD+Y+PGCPP+    IYG  +
Sbjct: 131 VSYGACGCTGGIFHDNYCVWGGTDKLFPVDVYIPGCPPSPAQTIYGFAM 179


>gi|297545022|ref|YP_003677324.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Thermoanaerobacter
           mathranii subsp. mathranii str. A3]
 gi|296842797|gb|ADH61313.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Thermoanaerobacter
           mathranii subsp. mathranii str. A3]
          Length = 155

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 51/149 (34%), Positives = 87/149 (58%), Gaps = 7/149 (4%)

Query: 43  VDQLVTWARTGSLMWMTF---GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVA 99
           + + +  +   S   + +       C +E++    P YD+ERFG     +P+ +D+++V 
Sbjct: 3   LKEFIEKSFKKSPWVIHYDCGSCNGCDIELLSCMTPLYDMERFGMVNVGNPKHADILVVT 62

Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGC 159
           GT+ +K    L+ +YDQMPEP+ V+++G CA  GG +   Y+VV G D+I+PVD+YVPGC
Sbjct: 63  GTVNHKNKVVLKNIYDQMPEPKVVVAVGVCAATGGIFRECYNVVGGVDKIIPVDVYVPGC 122

Query: 160 PPTAEALIYGILL----LQKKIRRVGNVK 184
           P   EA+I G+      L++K  ++   +
Sbjct: 123 PAKPEAIIDGLYKATEILKEKYDKMAKTE 151


>gi|260597692|ref|YP_003210263.1| formate hydrogenlyase subunit 7 [Cronobacter turicensis z3032]
 gi|260216869|emb|CBA30407.1| Formate hydrogenlyase subunit 7 [Cronobacter turicensis z3032]
          Length = 254

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 52/150 (34%), Positives = 77/150 (51%), Gaps = 5/150 (3%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPR 91
              +         L    R+  +  +  G    C +E+     P +D ERFG     SPR
Sbjct: 17  TVEESIARMKTSLLKNIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPR 76

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
            +D+++  G +T  M S   R ++  P+P+  IS G+C N GG +H  Y V  G D+IVP
Sbjct: 77  HADILLFTGAVTRAMRSPALRAWESAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVP 136

Query: 152 VDIYVPGCPPTAEALIYGILL----LQKKI 177
           VD+Y+PGCPPT  A +YG  +    L++KI
Sbjct: 137 VDVYIPGCPPTPAATLYGFAMALGLLEQKI 166


>gi|156934233|ref|YP_001438149.1| hypothetical protein ESA_02063 [Cronobacter sakazakii ATCC BAA-894]
 gi|156532487|gb|ABU77313.1| hypothetical protein ESA_02063 [Cronobacter sakazakii ATCC BAA-894]
          Length = 254

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 52/150 (34%), Positives = 77/150 (51%), Gaps = 5/150 (3%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPR 91
              +         L    R+  +  +  G    C +E+     P +D ERFG     SPR
Sbjct: 17  TVEESIARMKTSLLKNIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPR 76

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
            +D+++  G +T  M S   R ++  P+P+  IS G+C N GG +H  Y V  G D+IVP
Sbjct: 77  HADILLFTGAVTRAMRSPALRAWESAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVP 136

Query: 152 VDIYVPGCPPTAEALIYGILL----LQKKI 177
           VD+Y+PGCPPT  A +YG  +    L++KI
Sbjct: 137 VDVYIPGCPPTPAATLYGFAMALGLLEQKI 166


>gi|83591661|ref|YP_425413.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit [Rhodospirillum
           rubrum ATCC 11170]
 gi|83574575|gb|ABC21126.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit [Rhodospirillum
           rubrum ATCC 11170]
          Length = 173

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 53/122 (43%), Positives = 74/122 (60%), Gaps = 3/122 (2%)

Query: 52  TGSLMWMT---FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108
             SL            C +E + A  P YD ERFG     SPR +DV++++G +T     
Sbjct: 13  KRSLWVFHANAGACNGCDIEEVNAFTPYYDAERFGLKLVGSPRHADVLLISGPVTRTAEP 72

Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168
            LRR+Y+Q P P+ VI+ GSCA GGG +  SY V+ G D++VPVD Y+PGCPP  EA+++
Sbjct: 73  RLRRLYEQTPNPKVVIACGSCAVGGGMWFDSYHVLGGADKVVPVDFYIPGCPPRPEAILW 132

Query: 169 GI 170
           G+
Sbjct: 133 GV 134


>gi|289578801|ref|YP_003477428.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Thermoanaerobacter
           italicus Ab9]
 gi|289528514|gb|ADD02866.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Thermoanaerobacter
           italicus Ab9]
          Length = 155

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 51/149 (34%), Positives = 87/149 (58%), Gaps = 7/149 (4%)

Query: 43  VDQLVTWARTGSLMWMTF---GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVA 99
           + + +  +   S   + +       C +E++    P YD+ERFG     +P+ +D+++V 
Sbjct: 3   LKEFIEKSFKKSPWVIHYDCGSCNGCDIELLSCMTPLYDMERFGMVNVGNPKHADILVVT 62

Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGC 159
           GT+ +K    L+ +YDQMPEP+ V+++G CA  GG +   Y+VV G D+I+PVD+YVPGC
Sbjct: 63  GTVNHKNKVVLKNIYDQMPEPKVVVAVGVCAATGGIFRECYNVVGGVDKIIPVDVYVPGC 122

Query: 160 PPTAEALIYGILL----LQKKIRRVGNVK 184
           P   EA+I G+      L++K  ++   +
Sbjct: 123 PAKPEAIIDGLYKATEILKEKYDKMAKAE 151


>gi|147919461|ref|YP_686799.1| hydrogenase, small subunit-like protein (HycG-like) [uncultured
           methanogenic archaeon RC-I]
 gi|110622195|emb|CAJ37473.1| hydrogenase, small subunit-like protein (HycG-like) [uncultured
           methanogenic archaeon RC-I]
          Length = 247

 Score =  162 bits (410), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 53/125 (42%), Positives = 78/125 (62%), Gaps = 1/125 (0%)

Query: 49  WARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMA 107
           + R+ ++  +  G    C VE+   S   YD+ERFG    ASPR +D ++V G +T  M 
Sbjct: 113 FGRSLAIREVDAGSCNGCEVEVNSLSNAIYDIERFGLHIVASPRHADALLVTGPVTRNME 172

Query: 108 SALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALI 167
             L + Y+  P+P+ VI+MG+CA  GG +  SY+V  G D +VPVD+Y+PGCPP  +A+I
Sbjct: 173 RGLMQSYNATPDPKMVIAMGACAITGGIFRDSYAVYNGVDALVPVDVYIPGCPPRPQAII 232

Query: 168 YGILL 172
            GI+L
Sbjct: 233 QGIML 237


>gi|215488035|ref|YP_002330466.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit
           [Escherichia coli O127:H6 str. E2348/69]
 gi|215266107|emb|CAS10532.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit
           [Escherichia coli O127:H6 str. E2348/69]
          Length = 255

 Score =  162 bits (410), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 54/154 (35%), Positives = 78/154 (50%), Gaps = 5/154 (3%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPR 91
              +         L    R+  +  + FG    C +E+     P +D ERFG     SPR
Sbjct: 18  TVDESIASMKASLLKKIKRSAYVYRVDFGGCNGCEIEIFATLSPLFDAERFGIKVVPSPR 77

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
            +D+++  G +T  M S   R +   P+P+  IS G+C N GG +H  Y V  G D+IVP
Sbjct: 78  HADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVP 137

Query: 152 VDIYVPGCPPTAEALIYGILL----LQKKIRRVG 181
           VD+Y+PGCPPT  A +YG  +    L++KI   G
Sbjct: 138 VDVYIPGCPPTPAATLYGFAMALGLLEQKIHARG 171


>gi|297526163|ref|YP_003668187.1| NADH-quinone oxidoreductase, B subunit [Staphylothermus hellenicus
           DSM 12710]
 gi|297255079|gb|ADI31288.1| NADH-quinone oxidoreductase, B subunit [Staphylothermus hellenicus
           DSM 12710]
          Length = 179

 Score =  162 bits (410), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 57/138 (41%), Positives = 79/138 (57%)

Query: 46  LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNK 105
              W R+ S+  + +  AC A+E+    +   D ER+G     SPRQ+DV++V G +T K
Sbjct: 11  FAEWVRSRSIWMIHYCTACGAIELPPNIVAPLDAERWGIMAAPSPRQADVLVVMGYVTKK 70

Query: 106 MASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEA 165
               L R+Y QMPEPRYV+   +C   GG Y  SYS ++  D  +PVD++VPGC P AE 
Sbjct: 71  TLKILMRLYHQMPEPRYVMVGCNCPATGGLYWDSYSTIKAVDEFLPVDVWVPGCMPRAED 130

Query: 166 LIYGILLLQKKIRRVGNV 183
            + G L L+KKI     V
Sbjct: 131 WLQGFLRLRKKISEGRIV 148


>gi|282856067|ref|ZP_06265353.1| hydrogenase-4 component I [Pyramidobacter piscolens W5455]
 gi|282586088|gb|EFB91370.1| hydrogenase-4 component I [Pyramidobacter piscolens W5455]
          Length = 156

 Score =  162 bits (410), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 51/123 (41%), Positives = 75/123 (60%), Gaps = 3/123 (2%)

Query: 53  GSLMWMT---FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASA 109
            SL   T        C +E++ +  PRYD+ER G     +PR +DV++V G +T  M   
Sbjct: 12  KSLWVFTLNSGSCNGCDIEIVASLTPRYDIERLGLKLTGTPRHADVLLVTGPVTRFMEPK 71

Query: 110 LRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYG 169
           LR++Y Q+P+P+ VI++G+CA  G  ++ SY++V   DRIVPVD+YV GC    EALI G
Sbjct: 72  LRQIYAQIPDPKVVIAVGNCATSGDVFYKSYNLVGPVDRIVPVDVYVHGCAIRPEALIEG 131

Query: 170 ILL 172
           +  
Sbjct: 132 VAK 134


>gi|117617723|ref|YP_857018.1| hydrogenase-4 component I [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
 gi|117559130|gb|ABK36078.1| hydrogenase-4 component I [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
          Length = 271

 Score =  162 bits (410), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 50/127 (39%), Positives = 72/127 (56%), Gaps = 4/127 (3%)

Query: 60  FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119
            G   C +E+     P +D ERFG    ASPR +D+++  G +T  M     R Y+  P+
Sbjct: 50  GGCNACEIEIFATITPLFDAERFGIKVVASPRHADILLFTGAVTRAMRVPALRAYEAAPD 109

Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQK 175
           P+  I+ G+C   GG +H  Y V  G D+IVPVD+Y+PGCPPT  A IYG      LL++
Sbjct: 110 PKICIAYGACGCDGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATIYGFAVALGLLEQ 169

Query: 176 KIRRVGN 182
           K++   +
Sbjct: 170 KLKATSH 176


>gi|158425979|ref|YP_001527271.1| NADH ubiquinone oxidoreductase [Azorhizobium caulinodans ORS 571]
 gi|158332868|dbj|BAF90353.1| NADH ubiquinone oxidoreductase [Azorhizobium caulinodans ORS 571]
 gi|211948048|gb|ACJ13747.1| HyqI [Azorhizobium caulinodans ORS 571]
          Length = 170

 Score =  162 bits (409), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 48/128 (37%), Positives = 75/128 (58%), Gaps = 1/128 (0%)

Query: 50  ARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108
            R  ++  +  G    C +E+   S   YDLERFG    ASPR +DV++V G +T  M  
Sbjct: 42  GRGLAIRQVDAGSCNGCELEIHALSNAYYDLERFGLRFVASPRHADVLLVTGPVTTNMRE 101

Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168
           AL R Y+  P P++V++ GSCA  GG +  SY+     + ++PVD+ +PGCPP   +L+ 
Sbjct: 102 ALVRTYEATPGPKWVVAAGSCACDGGLFAQSYACAGAVENVIPVDLRIPGCPPAPLSLLK 161

Query: 169 GILLLQKK 176
           G++ L ++
Sbjct: 162 GLIALLQR 169


>gi|257064036|ref|YP_003143708.1| ech hydrogenase subunit C [Slackia heliotrinireducens DSM 20476]
 gi|256791689|gb|ACV22359.1| ech hydrogenase subunit C [Slackia heliotrinireducens DSM 20476]
          Length = 146

 Score =  162 bits (409), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 46/140 (32%), Positives = 80/140 (57%), Gaps = 7/140 (5%)

Query: 52  TGSLMWMTF---GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108
           + S   + +       C +E++ A  P YD ERFG     +P+ +D+ ++ G++  +   
Sbjct: 5   SKSPWVLHYDASSCNGCDIEVLAALSPVYDAERFGVINTGNPKHADIFVITGSVNERNID 64

Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168
            ++ +Y+QM EP+ V++ GSCA  GG +H  Y+V+ G D  +PVD+YVPGC    E++I 
Sbjct: 65  VVKELYEQMVEPKVVVACGSCACSGGIFHDCYNVLGGVDNAIPVDVYVPGCAVRPESIID 124

Query: 169 GILL----LQKKIRRVGNVK 184
           G++     L++K   + N K
Sbjct: 125 GVVEAIGILEEKAAALKNKK 144


>gi|182679430|ref|YP_001833576.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Beijerinckia indica
           subsp. indica ATCC 9039]
 gi|182635313|gb|ACB96087.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Beijerinckia indica
           subsp. indica ATCC 9039]
          Length = 177

 Score =  162 bits (409), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 54/168 (32%), Positives = 88/168 (52%), Gaps = 10/168 (5%)

Query: 11  ISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEM 69
           ++          D + + +++E+ H     + +       R+ ++  +  G    C +E+
Sbjct: 9   LAKPPLTEAGPTDGEIAALAAELDH--LARSRL------GRSLAIREVDAGSCNGCELEI 60

Query: 70  MQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSC 129
                  YDLERFG    ASPR +DV++V G +T+ M  AL R YD  P P++V++ G+C
Sbjct: 61  NALGNAFYDLERFGLRFVASPRHADVLLVTGPVTHNMREALLRTYDATPNPKWVVAAGTC 120

Query: 130 ANGGGYYHYSYSV-VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKK 176
           A G G +  SY+    G   ++ VD+Y+PGCPPT   L+ G+L L  K
Sbjct: 121 ALGEGVFAESYACQKGGVSAVIAVDLYIPGCPPTPTDLLKGLLALITK 168


>gi|90426039|ref|YP_534409.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Rhodopseudomonas
           palustris BisB18]
 gi|90108053|gb|ABD90090.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Rhodopseudomonas
           palustris BisB18]
          Length = 246

 Score =  162 bits (409), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 53/144 (36%), Positives = 80/144 (55%), Gaps = 5/144 (3%)

Query: 46  LVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTN 104
           L    R+  +  +  G    C +E+  A  P +D ERFG    ASPR +D+++  G +T 
Sbjct: 17  LSNIRRSAYVYRVDCGGCNGCEIEIFAAITPIFDAERFGIKVVASPRHADILLFTGAVTR 76

Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164
            M     R Y+  P+P+ V+S G+C   GG +H  Y V  G D++VPVD+Y+PGCPPT  
Sbjct: 77  AMRMPALRAYEAAPDPKIVVSYGACGCTGGIFHDLYCVWGGTDQVVPVDVYIPGCPPTPP 136

Query: 165 ALIYGIL----LLQKKIRRVGNVK 184
           A IYG      LL +K++   +++
Sbjct: 137 ATIYGFAVALGLLDQKLKAKTHIE 160


>gi|157148257|ref|YP_001455576.1| hypothetical protein CKO_04074 [Citrobacter koseri ATCC BAA-895]
 gi|157085462|gb|ABV15140.1| hypothetical protein CKO_04074 [Citrobacter koseri ATCC BAA-895]
          Length = 255

 Score =  162 bits (409), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 52/150 (34%), Positives = 76/150 (50%), Gaps = 5/150 (3%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPR 91
              +         L    R+  +  +  G    C +E+     P +D ERFG     SPR
Sbjct: 18  TVDESIASMKASLLKNIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPR 77

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
            +D+++  G +T  M S   R +   P+P+  IS G+C N GG +H  Y V  G D+IVP
Sbjct: 78  HADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVP 137

Query: 152 VDIYVPGCPPTAEALIYGILL----LQKKI 177
           VD+Y+PGCPPT  A +YG  +    L++KI
Sbjct: 138 VDVYIPGCPPTPAATLYGFAMALGLLEQKI 167


>gi|145298794|ref|YP_001141635.1| hydrogenase-4 component I [Aeromonas salmonicida subsp. salmonicida
           A449]
 gi|142851566|gb|ABO89887.1| hydrogenase-4 component I [Aeromonas salmonicida subsp. salmonicida
           A449]
          Length = 271

 Score =  161 bits (408), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 53/150 (35%), Positives = 80/150 (53%), Gaps = 7/150 (4%)

Query: 40  VTSVDQ--LVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVM 96
           +T + +  L    R+  +  +  G    C +E+     P +D ERFG    ASPR +D++
Sbjct: 27  ITKLKKTLLKDIRRSAYVYRVDCGGCNACEIEIFATITPLFDAERFGIKVVASPRHADIL 86

Query: 97  IVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV 156
           +  G +T  M     R Y+  P+P+  I+ G+C   GG +H  Y V  G D+IVPVD+Y+
Sbjct: 87  LFTGAVTRAMRVPALRAYEAAPDPKICIAYGACGCDGGIFHDLYCVWGGTDKIVPVDVYI 146

Query: 157 PGCPPTAEALIYGIL----LLQKKIRRVGN 182
           PGCPPT  A IYG      LL++K+    +
Sbjct: 147 PGCPPTPAATIYGFAVALGLLEQKLTATSH 176


>gi|218547773|ref|YP_002381564.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit
           [Escherichia fergusonii ATCC 35469]
 gi|218355314|emb|CAQ87921.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit
           [Escherichia fergusonii ATCC 35469]
          Length = 255

 Score =  161 bits (408), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 54/154 (35%), Positives = 78/154 (50%), Gaps = 5/154 (3%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPR 91
              +      V  L    R+  +  +  G    C +E+     P +D ERFG     SPR
Sbjct: 18  TVDESIASMKVSLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPR 77

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
            +D+++  G +T  M S   R +   P+P+  IS G+C N GG +H  Y V  G D+IVP
Sbjct: 78  HADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVP 137

Query: 152 VDIYVPGCPPTAEALIYGILL----LQKKIRRVG 181
           VD+Y+PGCPPT  A +YG  +    L++KI   G
Sbjct: 138 VDVYIPGCPPTPAATLYGFAMALGLLEQKIHARG 171


>gi|198244148|ref|YP_002216819.1| formate hydrogenlyase subunit G [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|197938664|gb|ACH75997.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|326624578|gb|EGE30923.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
          Length = 255

 Score =  161 bits (408), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 52/150 (34%), Positives = 76/150 (50%), Gaps = 5/150 (3%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPR 91
              +         L    R+  +  +  G    C +E+     P +D ERFG     SPR
Sbjct: 18  TVDESIASMKASLLKNIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPR 77

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
            +D+++  G +T  M S   R +   P+P+  IS G+C N GG +H  Y V  G D+IVP
Sbjct: 78  HADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVP 137

Query: 152 VDIYVPGCPPTAEALIYGILL----LQKKI 177
           VD+Y+PGCPPT  A +YG  +    L++KI
Sbjct: 138 VDVYIPGCPPTPAATLYGFAMALGLLEQKI 167


>gi|89074820|ref|ZP_01161274.1| hydrogenase-4 component I [Photobacterium sp. SKA34]
 gi|89049395|gb|EAR54957.1| hydrogenase-4 component I [Photobacterium sp. SKA34]
          Length = 277

 Score =  161 bits (408), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 56/141 (39%), Positives = 82/141 (58%), Gaps = 6/141 (4%)

Query: 44  DQLVTWARTGSLMWMT--FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGT 101
           D L+   R  + ++     G   C +E+  A+ P +D ERFG    ASPR +D+++  G+
Sbjct: 29  DALIKEIRRSAYVYRIDCGGCNACEIEIFAATTPVFDTERFGIKIVASPRHADILLYTGS 88

Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP 161
           +T  M +   R Y+  P+P+ VIS G+C   GG +H  Y V  G D+IVPVD+Y+PGCPP
Sbjct: 89  VTRAMRAPALRAYEAAPDPKIVISYGACGCDGGIFHDLYCVWGGTDKIVPVDVYIPGCPP 148

Query: 162 TAEALIYGIL----LLQKKIR 178
           T  A IYG      LL +K++
Sbjct: 149 TPAATIYGFAVALGLLDQKLK 169


>gi|207858110|ref|YP_002244761.1| formate hydrogenlyase subunit 7 [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|206709913|emb|CAR34267.1| formate hydrogenlyase subunit 7 [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
          Length = 255

 Score =  161 bits (408), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 52/153 (33%), Positives = 77/153 (50%), Gaps = 5/153 (3%)

Query: 30  SSEITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRA 88
           +     +         L    R+  +  +  G    C +E+     P +D ERFG     
Sbjct: 15  APMTVDESIASMKASLLKNIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVP 74

Query: 89  SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 148
           SPR +D+++  G +T  M S   R +   P+P+  IS G+C N GG +H  Y V  G D+
Sbjct: 75  SPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDK 134

Query: 149 IVPVDIYVPGCPPTAEALIYGILL----LQKKI 177
           IVPVD+Y+PGCPPT  A +YG  +    L++KI
Sbjct: 135 IVPVDVYIPGCPPTPAATLYGFAMALGLLEQKI 167


>gi|323212811|gb|EFZ97622.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
          Length = 228

 Score =  161 bits (408), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 52/137 (37%), Positives = 75/137 (54%), Gaps = 5/137 (3%)

Query: 46  LVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTN 104
           L    R+  +  +  G    C +E+     P +D ERFG     SPR +D+++  G +T 
Sbjct: 4   LKNIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTR 63

Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164
            M S   R +   P+P+  IS G+C N GG +H  Y V  G D+IVPVD+Y+PGCPPT  
Sbjct: 64  AMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPA 123

Query: 165 ALIYGILL----LQKKI 177
           A +YG  +    L++KI
Sbjct: 124 ATLYGFAMALGLLEQKI 140


>gi|271501147|ref|YP_003334172.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Dickeya dadantii
           Ech586]
 gi|270344702|gb|ACZ77467.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Dickeya dadantii
           Ech586]
          Length = 262

 Score =  161 bits (408), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 54/137 (39%), Positives = 78/137 (56%), Gaps = 5/137 (3%)

Query: 46  LVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTN 104
           L    R+  +  +  G    C +E+  A  P +D ERFG    ASPR +D+++  G +T 
Sbjct: 30  LKDIKRSAYVYRVDCGGCNGCEIEIFSAITPLFDAERFGIKVVASPRHADILLFTGAVTR 89

Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164
            M +   R Y+  P+P+  IS G+C  GGG +H  Y V  G D+IVP+D+Y+PGCPPT  
Sbjct: 90  AMRTPALRAYESAPDPKICISYGACGCGGGIFHDLYCVWGGSDKIVPIDVYIPGCPPTPA 149

Query: 165 ALIYGIL----LLQKKI 177
           A IYG      LL++K+
Sbjct: 150 ATIYGFAVALGLLEQKL 166


>gi|323180140|gb|EFZ65692.1| formate hydrogenlyase subunit 7 [Escherichia coli 1180]
          Length = 239

 Score =  161 bits (408), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 53/154 (34%), Positives = 77/154 (50%), Gaps = 5/154 (3%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPR 91
              +         L    R+  +  +  G    C +E+     P +D ERFG     SPR
Sbjct: 2   TVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPR 61

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
            +D+++  G +T  M S   R +   P+P+  IS G+C N GG +H  Y V  G D+IVP
Sbjct: 62  HADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVP 121

Query: 152 VDIYVPGCPPTAEALIYGILL----LQKKIRRVG 181
           VD+Y+PGCPPT  A +YG  +    L++KI   G
Sbjct: 122 VDVYIPGCPPTPAATLYGFAMALGLLEQKIHARG 155


>gi|283786731|ref|YP_003366596.1| formate hydrogenlyase subunit 7 [Citrobacter rodentium ICC168]
 gi|282950185|emb|CBG89821.1| formate hydrogenlyase subunit 7 [Citrobacter rodentium ICC168]
          Length = 255

 Score =  161 bits (408), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 52/150 (34%), Positives = 76/150 (50%), Gaps = 5/150 (3%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPR 91
              +         L    R+  +  +  G    C +E+     P +D ERFG     SPR
Sbjct: 18  TVDESIASMKASLLKNIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPR 77

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
            +D+++  G +T  M S   R +   P+P+  IS G+C N GG +H  Y V  G D+IVP
Sbjct: 78  HADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVP 137

Query: 152 VDIYVPGCPPTAEALIYGILL----LQKKI 177
           VD+Y+PGCPPT  A +YG  +    L++KI
Sbjct: 138 VDVYIPGCPPTPAATLYGFAMALGLLEQKI 167


>gi|312973071|ref|ZP_07787244.1| formate hydrogenlyase subunit 7 [Escherichia coli 1827-70]
 gi|310333013|gb|EFQ00227.1| formate hydrogenlyase subunit 7 [Escherichia coli 1827-70]
 gi|315615107|gb|EFU95744.1| formate hydrogenlyase subunit 7 [Escherichia coli 3431]
          Length = 239

 Score =  161 bits (407), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 53/154 (34%), Positives = 77/154 (50%), Gaps = 5/154 (3%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPR 91
              +         L    R+  +  +  G    C +E+     P +D ERFG     SPR
Sbjct: 2   TVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPR 61

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
            +D+++  G +T  M S   R +   P+P+  IS G+C N GG +H  Y V  G D+IVP
Sbjct: 62  HADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVP 121

Query: 152 VDIYVPGCPPTAEALIYGILL----LQKKIRRVG 181
           VD+Y+PGCPPT  A +YG  +    L++KI   G
Sbjct: 122 VDVYIPGCPPTPAATLYGFAMALGLLEQKIHARG 155


>gi|168230908|ref|ZP_02655966.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|194445653|ref|YP_002042089.1| formate hydrogenlyase subunit G [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194472446|ref|ZP_03078430.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|197265511|ref|ZP_03165585.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|194404316|gb|ACF64538.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194458810|gb|EDX47649.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|197243766|gb|EDY26386.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|205334465|gb|EDZ21229.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
          Length = 255

 Score =  161 bits (407), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 52/150 (34%), Positives = 76/150 (50%), Gaps = 5/150 (3%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPR 91
              +         L    R+  +  +  G    C +E+     P +D ERFG     SPR
Sbjct: 18  TVDESIASMKASLLKNIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPR 77

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
            +D+++  G +T  M S   R +   P+P+  IS G+C N GG +H  Y V  G D+IVP
Sbjct: 78  HADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVP 137

Query: 152 VDIYVPGCPPTAEALIYGILL----LQKKI 177
           VD+Y+PGCPPT  A +YG  +    L++KI
Sbjct: 138 VDVYIPGCPPTPAATLYGFAMALGLLEQKI 167


>gi|204928419|ref|ZP_03219619.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|204322741|gb|EDZ07938.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
          Length = 255

 Score =  161 bits (407), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 52/150 (34%), Positives = 76/150 (50%), Gaps = 5/150 (3%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPR 91
              +         L    R+  +  +  G    C +E+     P +D ERFG     SPR
Sbjct: 18  TVDESIASMKASLLKNIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPR 77

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
            +D+++  G +T  M S   R +   P+P+  IS G+C N GG +H  Y V  G D+IVP
Sbjct: 78  HADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVP 137

Query: 152 VDIYVPGCPPTAEALIYGILL----LQKKI 177
           VD+Y+PGCPPT  A +YG  +    L++KI
Sbjct: 138 VDVYIPGCPPTPAATLYGFAMALGLLEQKI 167


>gi|16766153|ref|NP_461768.1| hydrogenase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|62181350|ref|YP_217767.1| hydrogenase activity [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|161502108|ref|YP_001569220.1| hypothetical protein SARI_00125 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|161615750|ref|YP_001589715.1| hypothetical protein SPAB_03541 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|167550313|ref|ZP_02344070.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|167994151|ref|ZP_02575243.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168235879|ref|ZP_02660937.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|168242577|ref|ZP_02667509.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|168262039|ref|ZP_02684012.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|168464027|ref|ZP_02697944.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|168820465|ref|ZP_02832465.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|194448464|ref|YP_002046808.1| formate hydrogenlyase subunit G [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194734314|ref|YP_002115800.1| formate hydrogenlyase subunit G [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197248973|ref|YP_002147745.1| formate hydrogenlyase subunit G [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|200388880|ref|ZP_03215492.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|224584624|ref|YP_002638422.1| formate hydrogenlyase subunit 7 [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|238909614|ref|ZP_04653451.1| formate hydrogenlyase subunit 7 [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
 gi|16421393|gb|AAL21727.1| hydrogenase activity [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|62128983|gb|AAX66686.1| hydrogenase activity [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|160863455|gb|ABX20078.1| hypothetical protein SARI_00125 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
 gi|161365114|gb|ABX68882.1| hypothetical protein SPAB_03541 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194406768|gb|ACF66987.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194709816|gb|ACF89037.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|195633447|gb|EDX51861.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|197212676|gb|ACH50073.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197290829|gb|EDY30183.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|199605978|gb|EDZ04523.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|205324705|gb|EDZ12544.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205327917|gb|EDZ14681.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205337969|gb|EDZ24733.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|205342888|gb|EDZ29652.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|205348984|gb|EDZ35615.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|224469151|gb|ACN46981.1| formate hydrogenlyase subunit 7 [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|261247983|emb|CBG25816.1| formate hydrogenlyase subunit 7 [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
 gi|267994970|gb|ACY89855.1| hydrogenase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 14028S]
 gi|301159407|emb|CBW18925.1| formate hydrogenlyase subunit 7 [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
 gi|312913865|dbj|BAJ37839.1| formate hydrogenlyase subunit G [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|320087250|emb|CBY97015.1| NAD(P)H-quinone oxidoreductase subunit K, chloroplastic NAD(P)H
           dehydrogenase subunit K; NADH-plastoquinone
           oxidoreductase subunit K [Salmonella enterica subsp.
           enterica serovar Weltevreden str. 2007-60-3289-1]
 gi|321223400|gb|EFX48466.1| Formate hydrogenlyase subunit 7 [Salmonella enterica subsp.
           enterica serovar Typhimurium str. TN061786]
 gi|322614334|gb|EFY11265.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322621601|gb|EFY18454.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322624462|gb|EFY21295.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322628793|gb|EFY25576.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322633480|gb|EFY30222.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322635944|gb|EFY32652.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322639652|gb|EFY36337.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322646835|gb|EFY43338.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322650603|gb|EFY47008.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322654785|gb|EFY51104.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322659005|gb|EFY55258.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322664428|gb|EFY60622.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322668323|gb|EFY64480.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322673697|gb|EFY69798.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322677758|gb|EFY73821.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322681412|gb|EFY77444.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322683814|gb|EFY79824.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|322715833|gb|EFZ07404.1| hydrogenase [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. A50]
 gi|323131198|gb|ADX18628.1| hydrogenase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 4/74]
 gi|323193797|gb|EFZ79000.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323200267|gb|EFZ85349.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323203230|gb|EFZ88259.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323205523|gb|EFZ90488.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323216337|gb|EGA01064.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323221085|gb|EGA05516.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323226906|gb|EGA11088.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323230810|gb|EGA14928.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323234839|gb|EGA18925.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323238878|gb|EGA22928.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323241578|gb|EGA25609.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323248275|gb|EGA32211.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323251141|gb|EGA35014.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323256024|gb|EGA39762.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323263159|gb|EGA46697.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323264336|gb|EGA47842.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323271163|gb|EGA54591.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
 gi|332989719|gb|AEF08702.1| hydrogenase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. UK-1]
          Length = 255

 Score =  161 bits (407), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 52/150 (34%), Positives = 76/150 (50%), Gaps = 5/150 (3%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPR 91
              +         L    R+  +  +  G    C +E+     P +D ERFG     SPR
Sbjct: 18  TVDESIASMKASLLKNIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPR 77

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
            +D+++  G +T  M S   R +   P+P+  IS G+C N GG +H  Y V  G D+IVP
Sbjct: 78  HADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVP 137

Query: 152 VDIYVPGCPPTAEALIYGILL----LQKKI 177
           VD+Y+PGCPPT  A +YG  +    L++KI
Sbjct: 138 VDVYIPGCPPTPAATLYGFAMALGLLEQKI 167


>gi|74313286|ref|YP_311705.1| hydrogenase activity [Shigella sonnei Ss046]
 gi|73856763|gb|AAZ89470.1| hydrogenase activity [Shigella sonnei Ss046]
 gi|323167106|gb|EFZ52824.1| formate hydrogenlyase subunit 7 [Shigella sonnei 53G]
          Length = 255

 Score =  161 bits (407), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 53/154 (34%), Positives = 77/154 (50%), Gaps = 5/154 (3%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPR 91
              +         L    R+  +  +  G    C +E+     P +D ERFG     SPR
Sbjct: 18  TVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPR 77

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
            +D+++  G +T  M S   R +   P+P+  IS G+C N GG +H  Y V  G D+IVP
Sbjct: 78  HADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVP 137

Query: 152 VDIYVPGCPPTAEALIYGILL----LQKKIRRVG 181
           VD+Y+PGCPPT  A +YG  +    L++KI   G
Sbjct: 138 VDVYIPGCPPTPAATLYGFAMALGLLEQKIHARG 171


>gi|148264693|ref|YP_001231399.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Geobacter
           uraniireducens Rf4]
 gi|146398193|gb|ABQ26826.1| ech hydrogenase subunit C [Geobacter uraniireducens Rf4]
          Length = 147

 Score =  161 bits (407), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 47/137 (34%), Positives = 79/137 (57%), Gaps = 8/137 (5%)

Query: 47  VTWARTGSLMWMTF---GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLT 103
           + W    S   + +       C +E++ +  P YDLERFG     +P+ +D++ V G++ 
Sbjct: 1   MGWF-KRSPWVLHYNATSCNGCDIELIASLTPLYDLERFGIMSTGNPKHADILAVTGSVN 59

Query: 104 NKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTA 163
            K    L+ +YDQMP P+ ++++G CA  G  +   Y+V+ G D+++PVD+YVPGC    
Sbjct: 60  EKSRQVLQNLYDQMPNPKVIVAVGICATSGCVFQDCYNVLGGVDKVLPVDVYVPGCAARP 119

Query: 164 EALIYGILL----LQKK 176
           EA+I G+L     L++K
Sbjct: 120 EAIIDGVLKACDILEEK 136


>gi|299132789|ref|ZP_07025984.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Afipia sp. 1NLS2]
 gi|298592926|gb|EFI53126.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Afipia sp. 1NLS2]
          Length = 169

 Score =  161 bits (407), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 53/125 (42%), Positives = 76/125 (60%), Gaps = 1/125 (0%)

Query: 50  ARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108
            R+ SL  +  G    C +E+   S P YDLERFG    ASPR +DV++V G +T  M  
Sbjct: 42  GRSLSLRLVDAGSCNACELELNALSNPYYDLERFGLRFVASPRHADVLLVTGPVTKNMRE 101

Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168
            L R YD MP P++V+++G CA  GG Y  SY+  RG + ++PV++ + GCPP+   L+ 
Sbjct: 102 PLLRTYDAMPAPKWVVAVGDCAACGGLYADSYACERGANAVLPVNLRIVGCPPSPTQLLE 161

Query: 169 GILLL 173
           G+L L
Sbjct: 162 GLLAL 166


>gi|320173428|gb|EFW48627.1| Formate hydrogenlyase subunit 7 [Shigella dysenteriae CDC 74-1112]
          Length = 255

 Score =  161 bits (407), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 53/154 (34%), Positives = 77/154 (50%), Gaps = 5/154 (3%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPR 91
              +         L    R+  +  +  G    C +E+     P +D ERFG     SPR
Sbjct: 18  TVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPR 77

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
            +D+++  G +T  M S   R +   P+P+  IS G+C N GG +H  Y V  G D+IVP
Sbjct: 78  HADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVP 137

Query: 152 VDIYVPGCPPTAEALIYGILL----LQKKIRRVG 181
           VD+Y+PGCPPT  A +YG  +    L++KI   G
Sbjct: 138 VDVYIPGCPPTPAATLYGFAMALGLLEQKIHARG 171


>gi|300820494|ref|ZP_07100645.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 119-7]
 gi|331669452|ref|ZP_08370298.1| formate hydrogenlyase subunit 7 (FHL subunit 7)
           (Hydrogenase-3component G) [Escherichia coli TA271]
 gi|331678693|ref|ZP_08379367.1| formate hydrogenlyase subunit 7 (FHL subunit 7)
           (Hydrogenase-3component G) [Escherichia coli H591]
 gi|300526758|gb|EFK47827.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 119-7]
 gi|331063120|gb|EGI35033.1| formate hydrogenlyase subunit 7 (FHL subunit 7)
           (Hydrogenase-3component G) [Escherichia coli TA271]
 gi|331073523|gb|EGI44844.1| formate hydrogenlyase subunit 7 (FHL subunit 7)
           (Hydrogenase-3component G) [Escherichia coli H591]
          Length = 255

 Score =  161 bits (407), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 52/154 (33%), Positives = 77/154 (50%), Gaps = 5/154 (3%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPR 91
              +         L    R+  +  +  G    C +E+     P +D ERFG     SPR
Sbjct: 18  TVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPR 77

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
            +D+++  G +T  M S   R +   P+P+  IS G+C N GG +H  Y V  G D+I+P
Sbjct: 78  HADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIIP 137

Query: 152 VDIYVPGCPPTAEALIYGILL----LQKKIRRVG 181
           VD+Y+PGCPPT  A +YG  +    L++KI   G
Sbjct: 138 VDVYIPGCPPTPAATLYGFAMALGLLEQKIHARG 171


>gi|56414799|ref|YP_151874.1| formate hydrogenlyase subunit 7 [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197363727|ref|YP_002143364.1| formate hydrogenlyase subunit 7 [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|56129056|gb|AAV78562.1| formate hydrogenlyase subunit 7 [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197095204|emb|CAR60755.1| formate hydrogenlyase subunit 7 [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
          Length = 255

 Score =  161 bits (407), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 52/150 (34%), Positives = 76/150 (50%), Gaps = 5/150 (3%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPR 91
              +         L    R+  +  +  G    C +E+     P +D ERFG     SPR
Sbjct: 18  TVDESIASMKASLLKNIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPR 77

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
            +D+++  G +T  M S   R +   P+P+  IS G+C N GG +H  Y V  G D+IVP
Sbjct: 78  HADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVP 137

Query: 152 VDIYVPGCPPTAEALIYGILL----LQKKI 177
           VD+Y+PGCPPT  A +YG  +    L++KI
Sbjct: 138 VDVYIPGCPPTPAATLYGFAMALGLLEQKI 167


>gi|124486434|ref|YP_001031050.1| ech hydrogenase subunit C [Methanocorpusculum labreanum Z]
 gi|124363975|gb|ABN07783.1| ech hydrogenase subunit C [Methanocorpusculum labreanum Z]
          Length = 144

 Score =  161 bits (407), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 48/132 (36%), Positives = 77/132 (58%), Gaps = 7/132 (5%)

Query: 52  TGSLMWMTF---GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108
           + S   + +       C +E++ A  P YD+ERFG     +P  +D+ +V G +  +   
Sbjct: 5   SKSPWLLHYNASSCNGCDIEILAALTPVYDVERFGIINTGNPAHADIFVVTGGVNEQNKV 64

Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168
            L+ +YDQ+PEP+ V+++G CA+ GG +   Y++  G D I+PVD+YVPGC    EALI 
Sbjct: 65  VLKNLYDQIPEPKVVVAVGICASSGGVFRDCYNISGGVDTIIPVDVYVPGCSVRPEALIE 124

Query: 169 GILL----LQKK 176
           GI+     L++K
Sbjct: 125 GIVKALGVLEEK 136


>gi|317054477|ref|YP_004118502.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Pantoea sp. At-9b]
 gi|316952472|gb|ADU71946.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Pantoea sp. At-9b]
          Length = 254

 Score =  161 bits (407), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 53/149 (35%), Positives = 77/149 (51%), Gaps = 5/149 (3%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
             +         L    R+  +  +  G    C +E+  A  P +D ERFG     SPR 
Sbjct: 19  VEESIASLKASLLKKIKRSAYVYRVDCGGCNGCEIEIFAALTPLFDAERFGIKVVPSPRH 78

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           +D+++  G +T  M S   R +   P+P+  IS G+C N GG +H  Y V  G D+IVPV
Sbjct: 79  ADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPV 138

Query: 153 DIYVPGCPPTAEALIYGILL----LQKKI 177
           D+Y+PGCPPT  A +YG  +    L++KI
Sbjct: 139 DVYIPGCPPTPAATLYGFAMALGLLEQKI 167


>gi|83591007|ref|YP_431016.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Moorella
           thermoacetica ATCC 39073]
 gi|83573921|gb|ABC20473.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Moorella
           thermoacetica ATCC 39073]
          Length = 252

 Score =  161 bits (407), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 53/145 (36%), Positives = 78/145 (53%), Gaps = 7/145 (4%)

Query: 39  LVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
           L   +  ++   R+  +  +  G    C +E+     P YD ER GF   ASPR +D+++
Sbjct: 10  LKAKLKNVIK--RSVYVYRVDCGGCNGCEIEIFATISPVYDPERLGFKVVASPRHADILL 67

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
             G +T  M     R Y   P+P+ V++ G+C   GG +H  YSV  G   I PVD+Y+P
Sbjct: 68  FTGPMTRAMRLPAIRAYQAAPDPKIVVAYGTCGCSGGIFHDCYSVWGGTGSIFPVDVYIP 127

Query: 158 GCPPTAEALIYG----ILLLQKKIR 178
           GCPPT  A IYG    + LLQ+K++
Sbjct: 128 GCPPTPGATIYGLGLALDLLQQKMK 152


>gi|283835553|ref|ZP_06355294.1| hydrogenase-4 component I [Citrobacter youngae ATCC 29220]
 gi|291068763|gb|EFE06872.1| hydrogenase-4 component I [Citrobacter youngae ATCC 29220]
          Length = 255

 Score =  160 bits (406), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 52/150 (34%), Positives = 76/150 (50%), Gaps = 5/150 (3%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPR 91
              +         L    R+  +  +  G    C +E+     P +D ERFG     SPR
Sbjct: 18  TVDESIASMKASLLKNIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPR 77

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
            +D+++  G +T  M S   R +   P+P+  IS G+C N GG +H  Y V  G D+IVP
Sbjct: 78  HADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVP 137

Query: 152 VDIYVPGCPPTAEALIYGILL----LQKKI 177
           VD+Y+PGCPPT  A +YG  +    L++KI
Sbjct: 138 VDVYIPGCPPTPAATLYGFAMALGLLEQKI 167


>gi|317493922|ref|ZP_07952339.1| NADH ubiquinone oxidoreductase [Enterobacteriaceae bacterium
           9_2_54FAA]
 gi|316918249|gb|EFV39591.1| NADH ubiquinone oxidoreductase [Enterobacteriaceae bacterium
           9_2_54FAA]
          Length = 274

 Score =  160 bits (406), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 57/170 (33%), Positives = 87/170 (51%), Gaps = 6/170 (3%)

Query: 14  QSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQA 72
            +S  +   DA+   +   +  +   + S   L    R+  +  +  G    C +E+  A
Sbjct: 11  NNSPIIGPRDANGLPVPITVDEQIAKLKST-LLKDIRRSAYVYRVDCGGCNGCEIEIFSA 69

Query: 73  SMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANG 132
             P +D ERFG     SPR +D+++  G +T  M     R Y+  P+P+ VIS G+C   
Sbjct: 70  LTPLFDTERFGIKVVPSPRHADILLFTGAVTRSMRIPAIRAYESAPDPKIVISYGACGCS 129

Query: 133 GGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILL----LQKKIR 178
           GG +H  Y V  G D+IVPVD+Y+PGCPPT  A IYG  +    L +K++
Sbjct: 130 GGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATIYGFAMALGLLDQKLK 179


>gi|57234359|ref|YP_181588.1| hydrogenase, group 4, EchC subunit, putative [Dehalococcoides
           ethenogenes 195]
 gi|57224807|gb|AAW39864.1| hydrogenase, group 4, EchC subunit, putative [Dehalococcoides
           ethenogenes 195]
          Length = 155

 Score =  160 bits (406), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 46/131 (35%), Positives = 76/131 (58%), Gaps = 3/131 (2%)

Query: 45  QLVTWARTGSLMWMTF---GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGT 101
             VT ++  S   + F       C +E++    P YD+ERFG     +P+ SDV++V G 
Sbjct: 2   DFVTKSQIKSPWLLHFDCGSCNGCDIEILACLTPLYDVERFGIVNMGNPKHSDVLLVTGP 61

Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP 161
              +    L+ +Y QMP+P+ VI +G+C   GG +H   +++ G D+++PVD+YVPGC  
Sbjct: 62  ANKRNYRVLQNLYQQMPDPKVVIVIGTCGCSGGVFHNCPNILGGVDKVIPVDVYVPGCAA 121

Query: 162 TAEALIYGILL 172
             EA+I G+++
Sbjct: 122 RPEAIIDGVVM 132


>gi|218548077|ref|YP_002381868.1| hydrogenase 4, Fe-S subunit [Escherichia fergusonii ATCC 35469]
 gi|218355618|emb|CAQ88229.1| hydrogenase 4, Fe-S subunit [Escherichia fergusonii ATCC 35469]
          Length = 268

 Score =  160 bits (406), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 53/144 (36%), Positives = 77/144 (53%), Gaps = 5/144 (3%)

Query: 46  LVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTN 104
           L    R+  +  +  G    C +E+  A  P +D ERFG    +SPR +D+++  G +T 
Sbjct: 43  LKDIRRSAYVYRVDCGGCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTR 102

Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164
            M     R Y+  P+ +  +S G+C  GGG +H  Y V  G D IVPVD+++PGCPPT  
Sbjct: 103 AMRMPALRAYESAPDHKICVSYGACGVGGGIFHDLYCVWGGSDTIVPVDVWIPGCPPTPA 162

Query: 165 ALIYGIL----LLQKKIRRVGNVK 184
           A I+G      LLQ+KI     V+
Sbjct: 163 ATIHGFAVALGLLQQKIHAEDYVE 186


>gi|322831876|ref|YP_004211903.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Rahnella sp. Y9602]
 gi|321167077|gb|ADW72776.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Rahnella sp. Y9602]
          Length = 265

 Score =  160 bits (406), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 52/123 (42%), Positives = 71/123 (57%), Gaps = 4/123 (3%)

Query: 60  FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119
            G   C +E+  A  P +D ERFG     SPR +D+++  G +T  M     R +D  P+
Sbjct: 47  GGCNGCEIEIFAAISPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRIPALRAWDSAPD 106

Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILL----LQK 175
           P+  IS G+C N GG +H  Y V  G D+IVPVD+Y+PGCPPT  A IYG  +    L +
Sbjct: 107 PKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATIYGFAMALGLLDQ 166

Query: 176 KIR 178
           KI+
Sbjct: 167 KIK 169


>gi|307312858|ref|ZP_07592488.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Escherichia coli W]
 gi|306907293|gb|EFN37799.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Escherichia coli W]
 gi|315061995|gb|ADT76322.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit
           [Escherichia coli W]
 gi|323377422|gb|ADX49690.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Escherichia coli
           KO11]
          Length = 255

 Score =  160 bits (406), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 53/154 (34%), Positives = 77/154 (50%), Gaps = 5/154 (3%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPR 91
              +         L    R+  +  +  G    C +E+     P +D ERFG     SPR
Sbjct: 18  TVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPR 77

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
            +D+++  G +T  M S   R +   P+P+  IS G+C N GG +H  Y V  G D+IVP
Sbjct: 78  HADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVP 137

Query: 152 VDIYVPGCPPTAEALIYGILL----LQKKIRRVG 181
           VD+Y+PGCPPT  A +YG  +    L++KI   G
Sbjct: 138 VDVYIPGCPPTPAATLYGFAMALGLLEQKIHARG 171


>gi|26249118|ref|NP_755158.1| formate hydrogenlyase subunit 7 [Escherichia coli CFT073]
 gi|91212079|ref|YP_542065.1| formate hydrogenlyase subunit 7 [Escherichia coli UTI89]
 gi|110642842|ref|YP_670572.1| formate hydrogenlyase-3 component G [Escherichia coli 536]
 gi|117624951|ref|YP_853939.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit
           [Escherichia coli APEC O1]
 gi|157157238|ref|YP_001464031.1| formate hydrogenlyase, subunit G [Escherichia coli E24377A]
 gi|170683663|ref|YP_001744868.1| formate hydrogenlyase, subunit G [Escherichia coli SMS-3-5]
 gi|191166819|ref|ZP_03028645.1| formate hydrogenlyase, subunit G [Escherichia coli B7A]
 gi|191171381|ref|ZP_03032930.1| formate hydrogenlyase, subunit G [Escherichia coli F11]
 gi|193065043|ref|ZP_03046118.1| formate hydrogenlyase, subunit G [Escherichia coli E22]
 gi|193069668|ref|ZP_03050620.1| formate hydrogenlyase, subunit G [Escherichia coli E110019]
 gi|194427855|ref|ZP_03060401.1| formate hydrogenlyase, subunit G [Escherichia coli B171]
 gi|209920158|ref|YP_002294242.1| formate hydrogenlyase subunit [Escherichia coli SE11]
 gi|218555263|ref|YP_002388176.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit
           [Escherichia coli IAI1]
 gi|218559709|ref|YP_002392622.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit
           [Escherichia coli S88]
 gi|218690843|ref|YP_002399055.1| hydrogenase 3 and formate hydrogenase complex subunit HycG
           [Escherichia coli ED1a]
 gi|218701211|ref|YP_002408840.1| hydrogenase 3 and formate hydrogenase complex subunit HycG
           [Escherichia coli IAI39]
 gi|218706213|ref|YP_002413732.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit
           [Escherichia coli UMN026]
 gi|227888257|ref|ZP_04006062.1| hydrogenase activity [Escherichia coli 83972]
 gi|237706658|ref|ZP_04537139.1| formate hydrogenlyase subunit 7 [Escherichia sp. 3_2_53FAA]
 gi|256019502|ref|ZP_05433367.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit
           [Shigella sp. D9]
 gi|260845362|ref|YP_003223140.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit
           [Escherichia coli O103:H2 str. 12009]
 gi|293406211|ref|ZP_06650137.1| formate hydrogenlyase subunit 7 [Escherichia coli FVEC1412]
 gi|293412077|ref|ZP_06654800.1| conserved hypothetical protein [Escherichia coli B354]
 gi|293449035|ref|ZP_06663456.1| hycG [Escherichia coli B088]
 gi|298381948|ref|ZP_06991545.1| formate hydrogenlyase subunit 7 [Escherichia coli FVEC1302]
 gi|300815877|ref|ZP_07096101.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 107-1]
 gi|300899958|ref|ZP_07118161.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 198-1]
 gi|300906778|ref|ZP_07124460.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 84-1]
 gi|300922237|ref|ZP_07138363.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 182-1]
 gi|300975045|ref|ZP_07172846.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 200-1]
 gi|300976821|ref|ZP_07173638.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 45-1]
 gi|301027129|ref|ZP_07190498.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 69-1]
 gi|301049524|ref|ZP_07196482.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 185-1]
 gi|301305390|ref|ZP_07211484.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 124-1]
 gi|301326246|ref|ZP_07219629.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 78-1]
 gi|306812403|ref|ZP_07446601.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit
           [Escherichia coli NC101]
 gi|309795179|ref|ZP_07689598.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 145-7]
 gi|331658827|ref|ZP_08359769.1| formate hydrogenlyase subunit 7 (FHL subunit 7)
           (Hydrogenase-3component G) [Escherichia coli TA206]
 gi|331684332|ref|ZP_08384924.1| formate hydrogenlyase subunit 7 (FHL subunit 7)
           (Hydrogenase-3component G) [Escherichia coli H299]
 gi|332280624|ref|ZP_08393037.1| hydrogenase 3 and formate hydrogenase complex [Shigella sp. D9]
 gi|26109525|gb|AAN81728.1|AE016765_130 Formate hydrogenlyase subunit 7 [Escherichia coli CFT073]
 gi|91073653|gb|ABE08534.1| formate hydrogenlyase subunit 7 [Escherichia coli UTI89]
 gi|110344434|gb|ABG70671.1| formate hydrogenlyase-3 component G [Escherichia coli 536]
 gi|115514075|gb|ABJ02150.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit
           [Escherichia coli APEC O1]
 gi|157079268|gb|ABV18976.1| formate hydrogenlyase, subunit G [Escherichia coli E24377A]
 gi|170521381|gb|ACB19559.1| formate hydrogenlyase, subunit G [Escherichia coli SMS-3-5]
 gi|190903190|gb|EDV62913.1| formate hydrogenlyase, subunit G [Escherichia coli B7A]
 gi|190908315|gb|EDV67905.1| formate hydrogenlyase, subunit G [Escherichia coli F11]
 gi|192927340|gb|EDV81959.1| formate hydrogenlyase, subunit G [Escherichia coli E22]
 gi|192957031|gb|EDV87482.1| formate hydrogenlyase, subunit G [Escherichia coli E110019]
 gi|194414088|gb|EDX30364.1| formate hydrogenlyase, subunit G [Escherichia coli B171]
 gi|209913417|dbj|BAG78491.1| formate hydrogenlyase subunit [Escherichia coli SE11]
 gi|218362031|emb|CAQ99638.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit
           [Escherichia coli IAI1]
 gi|218366478|emb|CAR04230.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit
           [Escherichia coli S88]
 gi|218371197|emb|CAR19028.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit
           [Escherichia coli IAI39]
 gi|218428407|emb|CAR09332.2| hydrogenase 3 and formate hydrogenase complex, HycG subunit
           [Escherichia coli ED1a]
 gi|218433310|emb|CAR14210.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit
           [Escherichia coli UMN026]
 gi|222034413|emb|CAP77155.1| Formate hydrogenlyase subunit 7 [Escherichia coli LF82]
 gi|226899698|gb|EEH85957.1| formate hydrogenlyase subunit 7 [Escherichia sp. 3_2_53FAA]
 gi|227834526|gb|EEJ44992.1| hydrogenase activity [Escherichia coli 83972]
 gi|257760509|dbj|BAI32006.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit
           [Escherichia coli O103:H2 str. 12009]
 gi|284922655|emb|CBG35743.1| formate hydrogenlyase subunit 7 [Escherichia coli 042]
 gi|291322125|gb|EFE61554.1| hycG [Escherichia coli B088]
 gi|291426217|gb|EFE99249.1| formate hydrogenlyase subunit 7 [Escherichia coli FVEC1412]
 gi|291468848|gb|EFF11339.1| conserved hypothetical protein [Escherichia coli B354]
 gi|294489961|gb|ADE88717.1| formate hydrogenlyase, subunit G [Escherichia coli IHE3034]
 gi|298277088|gb|EFI18604.1| formate hydrogenlyase subunit 7 [Escherichia coli FVEC1302]
 gi|300298755|gb|EFJ55140.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 185-1]
 gi|300308813|gb|EFJ63333.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 200-1]
 gi|300356467|gb|EFJ72337.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 198-1]
 gi|300395161|gb|EFJ78699.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 69-1]
 gi|300401472|gb|EFJ85010.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 84-1]
 gi|300410007|gb|EFJ93545.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 45-1]
 gi|300421367|gb|EFK04678.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 182-1]
 gi|300531806|gb|EFK52868.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 107-1]
 gi|300839310|gb|EFK67070.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 124-1]
 gi|300847091|gb|EFK74851.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 78-1]
 gi|305854441|gb|EFM54879.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit
           [Escherichia coli NC101]
 gi|307554694|gb|ADN47469.1| formate hydrogenlyase subunit 7 [Escherichia coli ABU 83972]
 gi|307625710|gb|ADN70014.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit
           [Escherichia coli UM146]
 gi|308121150|gb|EFO58412.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 145-7]
 gi|312947248|gb|ADR28075.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit
           [Escherichia coli O83:H1 str. NRG 857C]
 gi|315254501|gb|EFU34469.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 85-1]
 gi|315289284|gb|EFU48679.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 110-3]
 gi|315293724|gb|EFU53076.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 153-1]
 gi|315298793|gb|EFU58047.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 16-3]
 gi|320194857|gb|EFW69486.1| Formate hydrogenlyase subunit 7 [Escherichia coli WV_060327]
 gi|320202369|gb|EFW76939.1| Formate hydrogenlyase subunit 7 [Escherichia coli EC4100B]
 gi|323159853|gb|EFZ45824.1| formate hydrogenlyase subunit 7 [Escherichia coli E128010]
 gi|323183246|gb|EFZ68643.1| formate hydrogenlyase subunit 7 [Escherichia coli 1357]
 gi|323188867|gb|EFZ74152.1| formate hydrogenlyase subunit 7 [Escherichia coli RN587/1]
 gi|323946400|gb|EGB42428.1| NADH ubiquinone oxidoreductase [Escherichia coli H120]
 gi|323951062|gb|EGB46938.1| NADH ubiquinone oxidoreductase [Escherichia coli H252]
 gi|323957069|gb|EGB52794.1| NADH ubiquinone oxidoreductase [Escherichia coli H263]
 gi|324005681|gb|EGB74900.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 57-2]
 gi|324013674|gb|EGB82893.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 60-1]
 gi|324017032|gb|EGB86251.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 117-3]
 gi|324119969|gb|EGC13847.1| NADH ubiquinone oxidoreductase [Escherichia coli E1167]
 gi|331053409|gb|EGI25438.1| formate hydrogenlyase subunit 7 (FHL subunit 7)
           (Hydrogenase-3component G) [Escherichia coli TA206]
 gi|331077947|gb|EGI49153.1| formate hydrogenlyase subunit 7 (FHL subunit 7)
           (Hydrogenase-3component G) [Escherichia coli H299]
 gi|332102976|gb|EGJ06322.1| hydrogenase 3 and formate hydrogenase complex [Shigella sp. D9]
          Length = 255

 Score =  160 bits (406), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 53/154 (34%), Positives = 77/154 (50%), Gaps = 5/154 (3%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPR 91
              +         L    R+  +  +  G    C +E+     P +D ERFG     SPR
Sbjct: 18  TVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPR 77

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
            +D+++  G +T  M S   R +   P+P+  IS G+C N GG +H  Y V  G D+IVP
Sbjct: 78  HADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVP 137

Query: 152 VDIYVPGCPPTAEALIYGILL----LQKKIRRVG 181
           VD+Y+PGCPPT  A +YG  +    L++KI   G
Sbjct: 138 VDVYIPGCPPTPAATLYGFAMALGLLEQKIHARG 171


>gi|154149575|ref|YP_001403193.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Candidatus
           Methanoregula boonei 6A8]
 gi|153998127|gb|ABS54550.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Methanoregula
           boonei 6A8]
          Length = 163

 Score =  160 bits (406), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 44/123 (35%), Positives = 72/123 (58%), Gaps = 3/123 (2%)

Query: 53  GSLMWMTF---GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASA 109
            S   + +       C +E++    P YD+ERFG     +P+ +D+ +V G++  +    
Sbjct: 6   KSPWIIHYDASSCNGCDIEILACLTPMYDVERFGIINTGNPKHADIFVVTGSVNEQNKYV 65

Query: 110 LRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYG 169
           +R +YDQMP+P+ V+++G CA  GG +   Y+V  G D I+PVD+YVPGC    E++I G
Sbjct: 66  IRNIYDQMPDPKVVVAIGICATSGGIFRECYNVAGGIDTIIPVDVYVPGCAARPESIIDG 125

Query: 170 ILL 172
           I+ 
Sbjct: 126 IVK 128


>gi|194432976|ref|ZP_03065259.1| formate hydrogenlyase, subunit G [Shigella dysenteriae 1012]
 gi|300941095|ref|ZP_07155607.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 21-1]
 gi|194418703|gb|EDX34789.1| formate hydrogenlyase, subunit G [Shigella dysenteriae 1012]
 gi|300454138|gb|EFK17631.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 21-1]
 gi|323966866|gb|EGB62295.1| NADH ubiquinone oxidoreductase [Escherichia coli M863]
 gi|323978671|gb|EGB73753.1| NADH ubiquinone oxidoreductase [Escherichia coli TW10509]
 gi|324111344|gb|EGC05326.1| NADH ubiquinone oxidoreductase [Escherichia fergusonii B253]
 gi|325496240|gb|EGC94099.1| formate hydrogenlyase, subunit G [Escherichia fergusonii ECD227]
 gi|327251442|gb|EGE63128.1| formate hydrogenlyase subunit 7 [Escherichia coli STEC_7v]
 gi|332087440|gb|EGI92568.1| formate hydrogenlyase subunit 7 [Shigella boydii 5216-82]
 gi|332088649|gb|EGI93762.1| formate hydrogenlyase subunit 7 [Shigella dysenteriae 155-74]
          Length = 255

 Score =  160 bits (406), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 53/154 (34%), Positives = 77/154 (50%), Gaps = 5/154 (3%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPR 91
              +         L    R+  +  +  G    C +E+     P +D ERFG     SPR
Sbjct: 18  TVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPR 77

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
            +D+++  G +T  M S   R +   P+P+  IS G+C N GG +H  Y V  G D+IVP
Sbjct: 78  HADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVP 137

Query: 152 VDIYVPGCPPTAEALIYGILL----LQKKIRRVG 181
           VD+Y+PGCPPT  A +YG  +    L++KI   G
Sbjct: 138 VDVYIPGCPPTPAATLYGFAMALGLLEQKIHARG 171


>gi|15803236|ref|NP_289268.1| hydrogenase activity [Escherichia coli O157:H7 EDL933]
 gi|15832829|ref|NP_311602.1| formate hydrogenlyase subunit-7 component G [Escherichia coli
           O157:H7 str. Sakai]
 gi|168749956|ref|ZP_02774978.1| formate hydrogenlyase, subunit G [Escherichia coli O157:H7 str.
           EC4113]
 gi|168755464|ref|ZP_02780471.1| formate hydrogenlyase, subunit G [Escherichia coli O157:H7 str.
           EC4401]
 gi|168762882|ref|ZP_02787889.1| formate hydrogenlyase, subunit G [Escherichia coli O157:H7 str.
           EC4501]
 gi|168768810|ref|ZP_02793817.1| formate hydrogenlyase, subunit G [Escherichia coli O157:H7 str.
           EC4486]
 gi|168774749|ref|ZP_02799756.1| formate hydrogenlyase, subunit G [Escherichia coli O157:H7 str.
           EC4196]
 gi|168778701|ref|ZP_02803708.1| formate hydrogenlyase, subunit G [Escherichia coli O157:H7 str.
           EC4076]
 gi|168787974|ref|ZP_02812981.1| formate hydrogenlyase, subunit G [Escherichia coli O157:H7 str.
           EC869]
 gi|168800200|ref|ZP_02825207.1| formate hydrogenlyase, subunit G [Escherichia coli O157:H7 str.
           EC508]
 gi|194438988|ref|ZP_03071072.1| formate hydrogenlyase, subunit G [Escherichia coli 101-1]
 gi|195938469|ref|ZP_03083851.1| formate hydrogenlyase subunit-7 component G [Escherichia coli
           O157:H7 str. EC4024]
 gi|208806906|ref|ZP_03249243.1| formate hydrogenlyase, subunit G [Escherichia coli O157:H7 str.
           EC4206]
 gi|208812606|ref|ZP_03253935.1| formate hydrogenlyase, subunit G [Escherichia coli O157:H7 str.
           EC4045]
 gi|208818509|ref|ZP_03258829.1| formate hydrogenlyase, subunit G [Escherichia coli O157:H7 str.
           EC4042]
 gi|209396735|ref|YP_002272182.1| formate hydrogenlyase, subunit G [Escherichia coli O157:H7 str.
           EC4115]
 gi|217327730|ref|ZP_03443813.1| formate hydrogenlyase, subunit G [Escherichia coli O157:H7 str.
           TW14588]
 gi|253772426|ref|YP_003035257.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254162650|ref|YP_003045758.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit
           [Escherichia coli B str. REL606]
 gi|254794659|ref|YP_003079496.1| hydrogenase 3 and formate hydrogenase complex subunit HycG
           [Escherichia coli O157:H7 str. TW14359]
 gi|260856826|ref|YP_003230717.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit
           [Escherichia coli O26:H11 str. 11368]
 gi|260869394|ref|YP_003235796.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit
           [Escherichia coli O111:H- str. 11128]
 gi|261226013|ref|ZP_05940294.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit
           [Escherichia coli O157:H7 str. FRIK2000]
 gi|261256729|ref|ZP_05949262.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit
           [Escherichia coli O157:H7 str. FRIK966]
 gi|291284046|ref|YP_003500864.1| Formate hydrogenlyase, subunit G [Escherichia coli O55:H7 str.
           CB9615]
 gi|293415969|ref|ZP_06658609.1| formate hydrogenlyase subunit 7 [Escherichia coli B185]
 gi|297519859|ref|ZP_06938245.1| Formate hydrogenlyase, subunit G [Escherichia coli OP50]
 gi|300919245|ref|ZP_07135768.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 115-1]
 gi|300930577|ref|ZP_07145969.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 187-1]
 gi|331654196|ref|ZP_08355196.1| formate hydrogenlyase subunit 7 (FHL subunit 7)
           (Hydrogenase-3component G) [Escherichia coli M718]
 gi|331674227|ref|ZP_08374987.1| formate hydrogenlyase subunit 7 (FHL subunit 7)
           (Hydrogenase-3component G) [Escherichia coli TA280]
 gi|12517167|gb|AAG57826.1|AE005500_5 hydrogenase activity [Escherichia coli O157:H7 str. EDL933]
 gi|13363046|dbj|BAB36998.1| formate hydrogenlyase subunit-7 component G [Escherichia coli
           O157:H7 str. Sakai]
 gi|187769518|gb|EDU33362.1| formate hydrogenlyase, subunit G [Escherichia coli O157:H7 str.
           EC4196]
 gi|188015810|gb|EDU53932.1| formate hydrogenlyase, subunit G [Escherichia coli O157:H7 str.
           EC4113]
 gi|189003614|gb|EDU72600.1| formate hydrogenlyase, subunit G [Escherichia coli O157:H7 str.
           EC4076]
 gi|189357334|gb|EDU75753.1| formate hydrogenlyase, subunit G [Escherichia coli O157:H7 str.
           EC4401]
 gi|189362033|gb|EDU80452.1| formate hydrogenlyase, subunit G [Escherichia coli O157:H7 str.
           EC4486]
 gi|189366866|gb|EDU85282.1| formate hydrogenlyase, subunit G [Escherichia coli O157:H7 str.
           EC4501]
 gi|189372104|gb|EDU90520.1| formate hydrogenlyase, subunit G [Escherichia coli O157:H7 str.
           EC869]
 gi|189377479|gb|EDU95895.1| formate hydrogenlyase, subunit G [Escherichia coli O157:H7 str.
           EC508]
 gi|194422109|gb|EDX38112.1| formate hydrogenlyase, subunit G [Escherichia coli 101-1]
 gi|208726707|gb|EDZ76308.1| formate hydrogenlyase, subunit G [Escherichia coli O157:H7 str.
           EC4206]
 gi|208733883|gb|EDZ82570.1| formate hydrogenlyase, subunit G [Escherichia coli O157:H7 str.
           EC4045]
 gi|208738632|gb|EDZ86314.1| formate hydrogenlyase, subunit G [Escherichia coli O157:H7 str.
           EC4042]
 gi|209158135|gb|ACI35568.1| formate hydrogenlyase, subunit G [Escherichia coli O157:H7 str.
           EC4115]
 gi|209761908|gb|ACI79266.1| formate hydrogenlyase subunit-7 component G [Escherichia coli]
 gi|209761910|gb|ACI79267.1| formate hydrogenlyase subunit-7 component G [Escherichia coli]
 gi|209761912|gb|ACI79268.1| formate hydrogenlyase subunit-7 component G [Escherichia coli]
 gi|209761914|gb|ACI79269.1| formate hydrogenlyase subunit-7 component G [Escherichia coli]
 gi|209761916|gb|ACI79270.1| formate hydrogenlyase subunit-7 component G [Escherichia coli]
 gi|217320097|gb|EEC28522.1| formate hydrogenlyase, subunit G [Escherichia coli O157:H7 str.
           TW14588]
 gi|242378276|emb|CAQ33051.1| hydrogenase 3 and formate hydrogenlyase complex, HycG subunit,
           subunit of hydrogenase 3 and formate hydrogenlyase
           complex [Escherichia coli BL21(DE3)]
 gi|253323470|gb|ACT28072.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253974551|gb|ACT40222.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit
           [Escherichia coli B str. REL606]
 gi|253978718|gb|ACT44388.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit
           [Escherichia coli BL21(DE3)]
 gi|254594059|gb|ACT73420.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit
           [Escherichia coli O157:H7 str. TW14359]
 gi|257755475|dbj|BAI26977.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit
           [Escherichia coli O26:H11 str. 11368]
 gi|257765750|dbj|BAI37245.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit
           [Escherichia coli O111:H- str. 11128]
 gi|290763919|gb|ADD57880.1| Formate hydrogenlyase, subunit G [Escherichia coli O55:H7 str.
           CB9615]
 gi|291432158|gb|EFF05140.1| formate hydrogenlyase subunit 7 [Escherichia coli B185]
 gi|300413690|gb|EFJ97000.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 115-1]
 gi|300461519|gb|EFK25012.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 187-1]
 gi|320189051|gb|EFW63710.1| Formate hydrogenlyase subunit 7 [Escherichia coli O157:H7 str.
           EC1212]
 gi|320640362|gb|EFX09901.1| Formate hydrogenlyase, subunit G [Escherichia coli O157:H7 str.
           G5101]
 gi|320645909|gb|EFX14890.1| Formate hydrogenlyase, subunit G [Escherichia coli O157:H- str.
           493-89]
 gi|320651209|gb|EFX19644.1| Formate hydrogenlyase, subunit G [Escherichia coli O157:H- str. H
           2687]
 gi|320656759|gb|EFX24647.1| Formate hydrogenlyase, subunit G [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
 gi|320662302|gb|EFX29699.1| Formate hydrogenlyase, subunit G [Escherichia coli O55:H7 str. USDA
           5905]
 gi|320667353|gb|EFX34311.1| Formate hydrogenlyase, subunit G [Escherichia coli O157:H7 str.
           LSU-61]
 gi|323154935|gb|EFZ41127.1| formate hydrogenlyase subunit 7 [Escherichia coli EPECa14]
 gi|323941450|gb|EGB37633.1| NADH ubiquinone oxidoreductase [Escherichia coli E482]
 gi|323960621|gb|EGB56247.1| NADH ubiquinone oxidoreductase [Escherichia coli H489]
 gi|323971552|gb|EGB66785.1| NADH ubiquinone oxidoreductase [Escherichia coli TA007]
 gi|326339209|gb|EGD63024.1| Formate hydrogenlyase subunit 7 [Escherichia coli O157:H7 str.
           1044]
 gi|326342908|gb|EGD66676.1| Formate hydrogenlyase subunit 7 [Escherichia coli O157:H7 str.
           1125]
 gi|331047578|gb|EGI19655.1| formate hydrogenlyase subunit 7 (FHL subunit 7)
           (Hydrogenase-3component G) [Escherichia coli M718]
 gi|331068321|gb|EGI39716.1| formate hydrogenlyase subunit 7 (FHL subunit 7)
           (Hydrogenase-3component G) [Escherichia coli TA280]
          Length = 255

 Score =  160 bits (406), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 53/154 (34%), Positives = 77/154 (50%), Gaps = 5/154 (3%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPR 91
              +         L    R+  +  +  G    C +E+     P +D ERFG     SPR
Sbjct: 18  TVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPR 77

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
            +D+++  G +T  M S   R +   P+P+  IS G+C N GG +H  Y V  G D+IVP
Sbjct: 78  HADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVP 137

Query: 152 VDIYVPGCPPTAEALIYGILL----LQKKIRRVG 181
           VD+Y+PGCPPT  A +YG  +    L++KI   G
Sbjct: 138 VDVYIPGCPPTPAATLYGFAMALGLLEQKIHARG 171


>gi|324112980|gb|EGC06956.1| NADH ubiquinone oxidoreductase [Escherichia fergusonii B253]
 gi|325496480|gb|EGC94339.1| hydrogenase 4, Fe-S subunit [Escherichia fergusonii ECD227]
          Length = 255

 Score =  160 bits (406), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 53/144 (36%), Positives = 77/144 (53%), Gaps = 5/144 (3%)

Query: 46  LVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTN 104
           L    R+  +  +  G    C +E+  A  P +D ERFG    +SPR +D+++  G +T 
Sbjct: 30  LKDIRRSAYVYRVDCGGCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTR 89

Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164
            M     R Y+  P+ +  +S G+C  GGG +H  Y V  G D IVPVD+++PGCPPT  
Sbjct: 90  AMRMPALRAYESAPDHKICVSYGACGVGGGIFHDLYCVWGGSDTIVPVDVWIPGCPPTPA 149

Query: 165 ALIYGIL----LLQKKIRRVGNVK 184
           A I+G      LLQ+KI     V+
Sbjct: 150 ATIHGFAVALGLLQQKIHAEDYVE 173


>gi|307130311|ref|YP_003882327.1| hydrogenase 4, Fe-S subunit [Dickeya dadantii 3937]
 gi|306527840|gb|ADM97770.1| hydrogenase 4, Fe-S subunit [Dickeya dadantii 3937]
          Length = 263

 Score =  160 bits (406), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 55/137 (40%), Positives = 78/137 (56%), Gaps = 5/137 (3%)

Query: 46  LVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTN 104
           L    R+  +  +  G    C +E+  A  P +D ERFG    ASPR +D+++  G +T 
Sbjct: 30  LKDIQRSAYVYRVDCGGCNGCEIEIFSAITPLFDAERFGIKVVASPRHADILLFTGAVTR 89

Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164
            M S   R Y+  P+P+  IS G+C  GGG +H  Y V  G D+IVP+D+Y+PGCPPT  
Sbjct: 90  AMRSPALRAYESAPDPKICISYGACGCGGGIFHDLYCVWGGSDKIVPIDVYIPGCPPTPA 149

Query: 165 ALIYGIL----LLQKKI 177
           A IYG      LL++K+
Sbjct: 150 ATIYGFAVALGLLEQKL 166


>gi|289433303|ref|YP_003463176.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Dehalococcoides sp.
           GT]
 gi|288947023|gb|ADC74720.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Dehalococcoides sp.
           GT]
          Length = 181

 Score =  160 bits (406), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 56/179 (31%), Positives = 95/179 (53%), Gaps = 9/179 (5%)

Query: 2   GLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFG 61
            +  V   +   +    +   DA+F ++       GF + S    + + R+ ++  +  G
Sbjct: 10  AVKNVLNNMFGPKICKQMPLGDAEFDKL-------GFALKSEINTI-FGRSLAIRALDSG 61

Query: 62  L-ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
                 +E+   S P YD+ERFG +  ASPR +D++IV G +T  MA A+R+ +D MP P
Sbjct: 62  SDNSAEIELNNLSNPYYDVERFGISFVASPRHADILIVTGAVTQNMAIAVRKTFDAMPSP 121

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           + VI++G  A  GG     Y V+ G D+I+PV++ +PG PP    +I  +L L + +R+
Sbjct: 122 KLVIALGDDACSGGIASGGYGVLGGVDKILPVNLKIPGNPPEPAQIINALLGLMQSLRK 180


>gi|205353791|ref|YP_002227592.1| formate hydrogenlyase subunit 7 [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|205273572|emb|CAR38559.1| formate hydrogenlyase subunit 7 [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|326628899|gb|EGE35242.1| formate hydrogenlyase subunit 7 [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9]
          Length = 255

 Score =  160 bits (405), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 52/153 (33%), Positives = 77/153 (50%), Gaps = 5/153 (3%)

Query: 30  SSEITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRA 88
           +     +         L    R+  +  +  G    C +E+     P +D ERFG     
Sbjct: 15  APMTVDESIASMKASLLKNIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVP 74

Query: 89  SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 148
           SPR +D+++  G +T  M S   R +   P+P+  IS G+C N GG +H  Y V  G D+
Sbjct: 75  SPRHADILLFTGAVTRAMRSPELRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDK 134

Query: 149 IVPVDIYVPGCPPTAEALIYGILL----LQKKI 177
           IVPVD+Y+PGCPPT  A +YG  +    L++KI
Sbjct: 135 IVPVDVYIPGCPPTPAATLYGFAMALGLLEQKI 167


>gi|16761624|ref|NP_457241.1| formate hydrogenlyase subunit 7 [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|213052199|ref|ZP_03345077.1| formate hydrogenlyase subunit 7 [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
 gi|213426140|ref|ZP_03358890.1| formate hydrogenlyase subunit 7 [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|213648116|ref|ZP_03378169.1| formate hydrogenlyase subunit 7 [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
 gi|213855567|ref|ZP_03383807.1| formate hydrogenlyase subunit 7 [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
 gi|289823877|ref|ZP_06543483.1| formate hydrogenlyase subunit 7 [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-3139]
 gi|25298993|pir||AC0846 formate hydrogenlyase chain 7 [imported] - Salmonella enterica
           subsp. enterica serovar Typhi (strain CT18)
 gi|16503925|emb|CAD05954.1| formate hydrogenlyase subunit 7 [Salmonella enterica subsp.
           enterica serovar Typhi]
          Length = 255

 Score =  160 bits (405), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 52/150 (34%), Positives = 76/150 (50%), Gaps = 5/150 (3%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPR 91
              +         L    R+  +  +  G    C +E+     P +D ERFG     SPR
Sbjct: 18  TVDESIASMKASLLKNIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPR 77

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
            +D+++  G +T  M S   R +   P+P+  IS G+C N GG +H  Y V  G D+IVP
Sbjct: 78  HADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVP 137

Query: 152 VDIYVPGCPPTAEALIYGILL----LQKKI 177
           VD+Y+PGCPPT  A +YG  +    L++KI
Sbjct: 138 VDVYIPGCPPTPAATLYGFAMALGLLEQKI 167


>gi|16130626|ref|NP_417199.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit
           [Escherichia coli str. K-12 substr. MG1655]
 gi|89109506|ref|AP_003286.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit
           [Escherichia coli str. K-12 substr. W3110]
 gi|157162165|ref|YP_001459483.1| formate hydrogenlyase, subunit G [Escherichia coli HS]
 gi|170019035|ref|YP_001723989.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Escherichia coli
           ATCC 8739]
 gi|170082295|ref|YP_001731615.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit
           [Escherichia coli str. K-12 substr. DH10B]
 gi|188491683|ref|ZP_02998953.1| NADH ubiquinone oxidoreductase [Escherichia coli 53638]
 gi|238901856|ref|YP_002927652.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit
           [Escherichia coli BW2952]
 gi|254037758|ref|ZP_04871816.1| hydrogenase 3 and formate hydrogenase complex [Escherichia sp.
           1_1_43]
 gi|256024774|ref|ZP_05438639.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit
           [Escherichia sp. 4_1_40B]
 gi|300947003|ref|ZP_07161229.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 116-1]
 gi|300954959|ref|ZP_07167371.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 175-1]
 gi|301027398|ref|ZP_07190737.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 196-1]
 gi|301645301|ref|ZP_07245251.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 146-1]
 gi|307139406|ref|ZP_07498762.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit
           [Escherichia coli H736]
 gi|331643403|ref|ZP_08344534.1| formate hydrogenlyase subunit 7 (FHL subunit 7)
           (Hydrogenase-3component G) [Escherichia coli H736]
 gi|2506958|sp|P16433|HYCG_ECOLI RecName: Full=Formate hydrogenlyase subunit 7; Short=FHL subunit 7;
           AltName: Full=Hydrogenase-3 component G
 gi|882612|gb|AAA69229.1| formate hydrogenlyase subunit 7 [Escherichia coli str. K-12 substr.
           MG1655]
 gi|1789074|gb|AAC75761.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit
           [Escherichia coli str. K-12 substr. MG1655]
 gi|85675540|dbj|BAE76796.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit
           [Escherichia coli str. K12 substr. W3110]
 gi|157067845|gb|ABV07100.1| formate hydrogenlyase, subunit G [Escherichia coli HS]
 gi|169753963|gb|ACA76662.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Escherichia coli
           ATCC 8739]
 gi|169890130|gb|ACB03837.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit
           [Escherichia coli str. K-12 substr. DH10B]
 gi|188486882|gb|EDU61985.1| NADH ubiquinone oxidoreductase [Escherichia coli 53638]
 gi|226839382|gb|EEH71403.1| hydrogenase 3 and formate hydrogenase complex [Escherichia sp.
           1_1_43]
 gi|238861454|gb|ACR63452.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit
           [Escherichia coli BW2952]
 gi|260448231|gb|ACX38653.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Escherichia coli
           DH1]
 gi|299879312|gb|EFI87523.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 196-1]
 gi|300318094|gb|EFJ67878.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 175-1]
 gi|300453390|gb|EFK17010.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 116-1]
 gi|301076419|gb|EFK91225.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 146-1]
 gi|309703078|emb|CBJ02410.1| formate hydrogenlyase subunit 7 [Escherichia coli ETEC H10407]
 gi|315137326|dbj|BAJ44485.1| hydrogenase 3 and formate hydrogenase complex [Escherichia coli
           DH1]
 gi|323172993|gb|EFZ58624.1| formate hydrogenlyase subunit 7 [Escherichia coli LT-68]
 gi|323935725|gb|EGB32039.1| NADH ubiquinone oxidoreductase [Escherichia coli E1520]
 gi|331036874|gb|EGI09098.1| formate hydrogenlyase subunit 7 (FHL subunit 7)
           (Hydrogenase-3component G) [Escherichia coli H736]
 gi|332344600|gb|AEE57934.1| formate hydrogenlyase subunit 7 [Escherichia coli UMNK88]
          Length = 255

 Score =  160 bits (405), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 53/154 (34%), Positives = 77/154 (50%), Gaps = 5/154 (3%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPR 91
              +         L    R+  +  +  G    C +E+     P +D ERFG     SPR
Sbjct: 18  TVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPR 77

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
            +D+++  G +T  M S   R +   P+P+  IS G+C N GG +H  Y V  G D+IVP
Sbjct: 78  HADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVP 137

Query: 152 VDIYVPGCPPTAEALIYGILL----LQKKIRRVG 181
           VD+Y+PGCPPT  A +YG  +    L++KI   G
Sbjct: 138 VDVYIPGCPPTPAATLYGFAMALGLLEQKIHARG 171


>gi|320186505|gb|EFW61233.1| Formate hydrogenlyase subunit 7 [Shigella flexneri CDC 796-83]
          Length = 255

 Score =  160 bits (405), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 53/154 (34%), Positives = 77/154 (50%), Gaps = 5/154 (3%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPR 91
              +         L    R+  +  +  G    C +E+     P +D ERFG     SPR
Sbjct: 18  TVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPR 77

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
            +D+++  G +T  M S   R +   P+P+  IS G+C N GG +H  Y V  G D+IVP
Sbjct: 78  HADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVP 137

Query: 152 VDIYVPGCPPTAEALIYGILL----LQKKIRRVG 181
           VD+Y+PGCPPT  A +YG  +    L++KI   G
Sbjct: 138 VDVYIPGCPPTPAATLYGFAMALGLLEQKIHARG 171


>gi|320180858|gb|EFW55781.1| Formate hydrogenlyase subunit 7 [Shigella boydii ATCC 9905]
          Length = 255

 Score =  160 bits (405), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 53/154 (34%), Positives = 77/154 (50%), Gaps = 5/154 (3%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPR 91
              +         L    R+  +  +  G    C +E+     P +D ERFG     SPR
Sbjct: 18  TVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPR 77

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
            +D+++  G +T  M S   R +   P+P+  IS G+C N GG +H  Y V  G D+IVP
Sbjct: 78  HADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVP 137

Query: 152 VDIYVPGCPPTAEALIYGILL----LQKKIRRVG 181
           VD+Y+PGCPPT  A +YG  +    L++KI   G
Sbjct: 138 VDVYIPGCPPTPAATLYGFAMVLGLLEQKIHARG 171


>gi|332161095|ref|YP_004297672.1| hydrogenase-4 component I [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|325665325|gb|ADZ41969.1| hydrogenase-4 component I [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|330863809|emb|CBX73904.1| formate hydrogenlyase subunit 7 [Yersinia enterocolitica W22703]
          Length = 267

 Score =  160 bits (405), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 52/138 (37%), Positives = 78/138 (56%), Gaps = 5/138 (3%)

Query: 46  LVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTN 104
           L    R+  +  +  G    C +E+  +  P +D ERFG    ASPR +D+++  G +T 
Sbjct: 33  LKDIKRSAYVYRVDCGGCNGCEIEIFSSITPLFDTERFGIKVVASPRHADILLFTGAVTR 92

Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164
            M +   R Y+  P+P+  +S G+C  GGG +H  Y V  G D IVP+D+Y+PGCPPT  
Sbjct: 93  AMRTPALRAYESAPDPKICVSYGACGCGGGIFHDLYCVWGGSDTIVPIDVYIPGCPPTPA 152

Query: 165 ALIYGIL----LLQKKIR 178
           A IYG      LL++K++
Sbjct: 153 ATIYGFAVALGLLEQKLK 170


>gi|91202885|emb|CAJ72524.1| strongly similar to membrane-bound [NiFe]-hydrogenase-3, small
           subunit (chain G) [Candidatus Kuenenia stuttgartiensis]
          Length = 262

 Score =  160 bits (405), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 51/130 (39%), Positives = 81/130 (62%), Gaps = 1/130 (0%)

Query: 51  RTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASA 109
           R+  +  +  G    C  E++    P +DL+RFG    ASPR +D ++V G  T  + +A
Sbjct: 133 RSLHVREIDAGSCNGCEWEVVALLNPVHDLQRFGIDIVASPRHADCLLVTGPPTRNLETA 192

Query: 110 LRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYG 169
           L + Y   PEP+ VI++G+CA  GG +  SY+   G D++VPVD+Y+PGCPP  +A+IYG
Sbjct: 193 LIKGYHATPEPKMVIALGTCACSGGIFSNSYATKNGIDKVVPVDVYIPGCPPRPQAIIYG 252

Query: 170 ILLLQKKIRR 179
            LL  +++++
Sbjct: 253 FLLALERVQK 262


>gi|251790300|ref|YP_003005021.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Dickeya zeae
           Ech1591]
 gi|247538921|gb|ACT07542.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Dickeya zeae
           Ech1591]
          Length = 263

 Score =  160 bits (405), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 54/137 (39%), Positives = 78/137 (56%), Gaps = 5/137 (3%)

Query: 46  LVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTN 104
           L    R+  +  +  G    C +E+  A  P +D ERFG    ASPR +D+++  G +T 
Sbjct: 30  LKDIQRSAYVYRVDCGGCNGCEIEIFSAITPLFDAERFGIKVVASPRHADILLFTGAVTR 89

Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164
            M +   R Y+  P+P+  IS G+C  GGG +H  Y V  G D+IVP+D+Y+PGCPPT  
Sbjct: 90  AMRTPALRAYESAPDPKICISYGACGCGGGIFHDLYCVWGGSDKIVPIDVYIPGCPPTPA 149

Query: 165 ALIYGIL----LLQKKI 177
           A IYG      LL++K+
Sbjct: 150 ATIYGFAVALGLLEQKL 166


>gi|110806654|ref|YP_690174.1| hydrogenase activity [Shigella flexneri 5 str. 8401]
 gi|110616202|gb|ABF04869.1| hydrogenase activity [Shigella flexneri 5 str. 8401]
          Length = 255

 Score =  160 bits (405), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 53/154 (34%), Positives = 77/154 (50%), Gaps = 5/154 (3%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPR 91
              +         L    R+  +  +  G    C +E+     P +D ERFG     SPR
Sbjct: 18  TMDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPR 77

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
            +D+++  G +T  M S   R +   P+P+  IS G+C N GG +H  Y V  G D+IVP
Sbjct: 78  HADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVP 137

Query: 152 VDIYVPGCPPTAEALIYGILL----LQKKIRRVG 181
           VD+Y+PGCPPT  A +YG  +    L++KI   G
Sbjct: 138 VDVYIPGCPPTPAATLYGFAMALGLLEQKIHARG 171


>gi|307825300|ref|ZP_07655520.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methylobacter
           tundripaludum SV96]
 gi|307733756|gb|EFO04613.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methylobacter
           tundripaludum SV96]
          Length = 171

 Score =  160 bits (404), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 52/159 (32%), Positives = 88/159 (55%), Gaps = 9/159 (5%)

Query: 21  KVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDL 79
             DA+  ++  E      + + +D+   ++ + ++  +  G    C +E+   + P YD+
Sbjct: 21  PKDAELEQLGIE------IKSRIDK--KFSGSIAIRQVDAGSCNGCELEIHALNNPFYDI 72

Query: 80  ERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS 139
           ERFG    ASPR +DV++V G ++  M +AL R Y+  P P++VI+ G CA  GG +  S
Sbjct: 73  ERFGVHFVASPRHADVLLVTGPVSRHMQTALLRTYEATPNPKWVIAAGDCAACGGEFGVS 132

Query: 140 YSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           Y+       ++PVD+ +PGCPPT  AL+ G+L L    +
Sbjct: 133 YASCGAVSNVIPVDVVIPGCPPTPLALMKGLLGLINAKK 171


>gi|83309305|ref|YP_419569.1| Ni,Fe-hydrogenase III small subunit [Magnetospirillum magneticum
           AMB-1]
 gi|82944146|dbj|BAE49010.1| Ni,Fe-hydrogenase III small subunit [Magnetospirillum magneticum
           AMB-1]
          Length = 178

 Score =  160 bits (404), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 52/129 (40%), Positives = 80/129 (62%), Gaps = 1/129 (0%)

Query: 52  TGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASAL 110
           + S+  +  G    C +E+   + P YDLERFG    ASPR +DV++V G +T  M  AL
Sbjct: 49  SLSIREVDAGSCNGCELEIHAVNHPIYDLERFGIRFVASPRHADVLLVTGPVTRNMEEAL 108

Query: 111 RRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGI 170
           RR  +  PEPR++++MG C   GG +  SY+VV G   +VPVD+++PGCPP+   ++ G+
Sbjct: 109 RRTVEATPEPRWIVAMGDCGKDGGCFAGSYAVVGGVSDVVPVDLHIPGCPPSPRQILAGL 168

Query: 171 LLLQKKIRR 179
           L L + + +
Sbjct: 169 LALLETVDQ 177


>gi|170765639|ref|ZP_02900450.1| formate hydrogenlyase, subunit G [Escherichia albertii TW07627]
 gi|170124785|gb|EDS93716.1| formate hydrogenlyase, subunit G [Escherichia albertii TW07627]
          Length = 255

 Score =  160 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 53/154 (34%), Positives = 77/154 (50%), Gaps = 5/154 (3%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPR 91
              +         L    R+  +  +  G    C +E+     P +D ERFG     SPR
Sbjct: 18  TVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPR 77

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
            +D+++  G +T  M S   R +   P+P+  IS G+C N GG +H  Y V  G D+IVP
Sbjct: 78  HADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVP 137

Query: 152 VDIYVPGCPPTAEALIYGILL----LQKKIRRVG 181
           VD+Y+PGCPPT  A +YG  +    L++KI   G
Sbjct: 138 VDVYIPGCPPTPAATLYGFAMALGLLEQKIHARG 171


>gi|312965023|ref|ZP_07779263.1| formate hydrogenlyase subunit 7 [Escherichia coli 2362-75]
 gi|331648437|ref|ZP_08349525.1| formate hydrogenlyase subunit 7 (FHL subunit 7)
           (Hydrogenase-3component G) [Escherichia coli M605]
 gi|281179722|dbj|BAI56052.1| formate hydrogenlyase subunit [Escherichia coli SE15]
 gi|312290579|gb|EFR18459.1| formate hydrogenlyase subunit 7 [Escherichia coli 2362-75]
 gi|331042184|gb|EGI14326.1| formate hydrogenlyase subunit 7 (FHL subunit 7)
           (Hydrogenase-3component G) [Escherichia coli M605]
          Length = 255

 Score =  160 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 53/154 (34%), Positives = 77/154 (50%), Gaps = 5/154 (3%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPR 91
              +         L    R+  +  +  G    C +E+     P +D ERFG     SPR
Sbjct: 18  TVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPR 77

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
            +D+++  G +T  M S   R +   P+P+  IS G+C N GG +H  Y V  G D+IVP
Sbjct: 78  HADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVP 137

Query: 152 VDIYVPGCPPTAEALIYGILL----LQKKIRRVG 181
           VD+Y+PGCPPT  A +YG  +    L++KI   G
Sbjct: 138 VDVYIPGCPPTPAATLYGFAMALGLLEQKIHARG 171


>gi|238921134|ref|YP_002934649.1| hydrogenase-4 component I [Edwardsiella ictaluri 93-146]
 gi|238870703|gb|ACR70414.1| hydrogenase-4 component I [Edwardsiella ictaluri 93-146]
          Length = 274

 Score =  160 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 56/173 (32%), Positives = 85/173 (49%), Gaps = 6/173 (3%)

Query: 11  ISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEM 69
               +   +   DA+   +   +  +   +     L    R+  +  +  G    C +E+
Sbjct: 7   TPPAAGALIGPRDANGQPVPITLDAQAARLKQT-LLKDIRRSAYVYRVDCGGCNGCEIEI 65

Query: 70  MQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSC 129
             A  P +D ERFG    ASPR +D+++  G +T  M     R Y   P+P+ VIS G+C
Sbjct: 66  FAAISPLFDAERFGIKVVASPRHADILLFTGAVTRAMRIPAIRAYQSAPDPKIVISYGAC 125

Query: 130 ANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKKIR 178
              GG +H  Y V  G D+IVPVD+Y+PGCPPT  A +YG      LL +K++
Sbjct: 126 GCSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAVALGLLDQKLK 178


>gi|318604974|emb|CBY26472.1| formate hydrogenlyase subunit 7 [Yersinia enterocolitica subsp.
           palearctica Y11]
          Length = 267

 Score =  160 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 52/138 (37%), Positives = 78/138 (56%), Gaps = 5/138 (3%)

Query: 46  LVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTN 104
           L    R+  +  +  G    C +E+  +  P +D ERFG    ASPR +D+++  G +T 
Sbjct: 33  LKDIKRSAYVYRVDCGGCNGCEIEIFSSITPLFDTERFGIKVVASPRHADILLFTGAVTR 92

Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164
            M +   R Y+  P+P+  +S G+C  GGG +H  Y V  G D IVP+D+Y+PGCPPT  
Sbjct: 93  AMRTPALRAYESAPDPKICVSYGACGCGGGIFHDLYCVWGGSDTIVPIDVYIPGCPPTPA 152

Query: 165 ALIYGIL----LLQKKIR 178
           A IYG      LL++K++
Sbjct: 153 ATIYGFAVALGLLEQKLK 170


>gi|73667700|ref|YP_303715.1| ech hydrogenase subunit C [Methanosarcina barkeri str. Fusaro]
 gi|3005969|emb|CAA76119.1| echC [Methanosarcina barkeri]
 gi|72394862|gb|AAZ69135.1| ech hydrogenase subunit C [Methanosarcina barkeri str. Fusaro]
          Length = 156

 Score =  159 bits (403), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 45/123 (36%), Positives = 78/123 (63%), Gaps = 3/123 (2%)

Query: 52  TGSLMWMTF---GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108
             S   +         C +E++    P YD ERFG     +P+Q+D+M+V G++  K  +
Sbjct: 4   AKSPWIIHVNCNSCNGCDIEVVACLTPLYDAERFGVLNIGTPKQADIMVVTGSVNYKNVN 63

Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168
            L+ +Y+Q+P+P+ V+++G+CA+ GG +H  Y+V+ G D+++PVD YVPGC P  EA++ 
Sbjct: 64  VLKNIYNQIPDPKVVLAVGACASTGGIFHDCYNVIGGVDQVIPVDAYVPGCCPRPEAILD 123

Query: 169 GIL 171
           G++
Sbjct: 124 GVV 126


>gi|242238721|ref|YP_002986902.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Dickeya dadantii
           Ech703]
 gi|242130778|gb|ACS85080.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Dickeya dadantii
           Ech703]
          Length = 263

 Score =  159 bits (403), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 54/137 (39%), Positives = 78/137 (56%), Gaps = 5/137 (3%)

Query: 46  LVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTN 104
           L    R+  +  +  G    C +E+  A  P +D ERFG    ASPR +D+++  G +T 
Sbjct: 30  LKDIQRSAYVYRVDCGGCNGCEIEIFSAITPLFDAERFGIKVVASPRHADILLFTGAVTR 89

Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164
            M +   R Y+  P+P+  IS G+C  GGG +H  Y V  G D+IVP+D+Y+PGCPPT  
Sbjct: 90  AMRTPALRAYESAPDPKICISYGACGCGGGIFHDLYCVWGGSDKIVPIDVYIPGCPPTPA 149

Query: 165 ALIYGIL----LLQKKI 177
           A IYG      LL++K+
Sbjct: 150 ATIYGFAVALGLLEQKL 166


>gi|288933891|ref|YP_003437950.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Klebsiella variicola
           At-22]
 gi|288888620|gb|ADC56938.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Klebsiella variicola
           At-22]
          Length = 255

 Score =  159 bits (403), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 55/167 (32%), Positives = 82/167 (49%), Gaps = 6/167 (3%)

Query: 16  SCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASM 74
           S  L   D + + +      +         L    R+  +  +  G    C +E+     
Sbjct: 2   STLLGPRDENGTPVP-MTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLS 60

Query: 75  PRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGG 134
           P +D ERFG     SPR +D+++  G +T  M S   R +   P+P+  IS G+C N GG
Sbjct: 61  PLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGG 120

Query: 135 YYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILL----LQKKI 177
            +H  Y V  G D+IVPVD+Y+PGCPPT  A +YG  +    L++KI
Sbjct: 121 IFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKI 167


>gi|325295363|ref|YP_004281877.1| NADH-quinone oxidoreductase, B subunit [Desulfurobacterium
           thermolithotrophum DSM 11699]
 gi|325065811|gb|ADY73818.1| NADH-quinone oxidoreductase, B subunit [Desulfurobacterium
           thermolithotrophum DSM 11699]
          Length = 156

 Score =  159 bits (403), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 60/138 (43%), Positives = 84/138 (60%)

Query: 45  QLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTN 104
           + + W+R  S   + F   CC++E++    PR+D ER+GF    SPRQ+D +IV G ++ 
Sbjct: 4   KFLDWSRANSPWGVHFCSGCCSLEVLALMGPRFDWERYGFMMTPSPRQADFIIVTGLVSK 63

Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164
           K+   L RVY QMPEPRYV  MG+CA GGG Y  S  V     + +P DI+V GCPP  E
Sbjct: 64  KVLPVLLRVYQQMPEPRYVFGMGACAGGGGPYWDSDFVAVDVSQYIPFDIFVTGCPPNPE 123

Query: 165 ALIYGILLLQKKIRRVGN 182
           A + G+L L++ I +  N
Sbjct: 124 ATLEGLLKLKEIILKNKN 141


>gi|295097300|emb|CBK86390.1| Ni,Fe-hydrogenase III small subunit [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 255

 Score =  159 bits (403), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 52/150 (34%), Positives = 76/150 (50%), Gaps = 5/150 (3%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPR 91
              +         L    R+  +  +  G    C +E+     P +D ERFG     SPR
Sbjct: 18  TVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPR 77

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
            +D+++  G +T  M S   R +   P+P+  IS G+C N GG +H  Y V  G D+IVP
Sbjct: 78  HADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVP 137

Query: 152 VDIYVPGCPPTAEALIYGILL----LQKKI 177
           VD+Y+PGCPPT  A +YG  +    L++KI
Sbjct: 138 VDVYIPGCPPTPAATLYGFAMALGLLEQKI 167


>gi|309702767|emb|CBJ02098.1| hydrogenase-4 component I [Escherichia coli ETEC H10407]
          Length = 251

 Score =  159 bits (403), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 51/132 (38%), Positives = 75/132 (56%), Gaps = 5/132 (3%)

Query: 51  RTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASA 109
           R  ++  +  G    C +E+  A  P +D ERFG    +SPR +D+++  G +T  M   
Sbjct: 31  RRSAVYRVDCGGCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMRMP 90

Query: 110 LRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYG 169
             R Y+  P+ +  +S G+C  GGG +H  YSV  G D IVP+D+++PGCPPT  A I+G
Sbjct: 91  ALRAYESAPDHKICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHG 150

Query: 170 IL----LLQKKI 177
                 LLQ+KI
Sbjct: 151 FAVALGLLQQKI 162


>gi|260913690|ref|ZP_05920166.1| hydrogenase-4 component I [Pasteurella dagmatis ATCC 43325]
 gi|260632229|gb|EEX50404.1| hydrogenase-4 component I [Pasteurella dagmatis ATCC 43325]
          Length = 254

 Score =  159 bits (403), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 50/143 (34%), Positives = 77/143 (53%), Gaps = 5/143 (3%)

Query: 46  LVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTN 104
           L    R+  +  +  G    C +E+     P +D ERFG    ASPR +D+++  G +T 
Sbjct: 26  LKDIQRSAYVYRVDCGGCNGCEIEIFSTITPVFDAERFGIKVVASPRHADILLFTGAVTR 85

Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164
            M +   R Y+  P+P+  +S G+C   GG +H  Y V  G D+IVP+D+Y+PGCPPT  
Sbjct: 86  AMLAPALRAYEAAPDPKICVSYGACGCSGGIFHDLYCVWGGSDKIVPIDVYIPGCPPTPA 145

Query: 165 ALIYGILL----LQKKIRRVGNV 183
           A IYG  +    L +K++    +
Sbjct: 146 ATIYGFAMALGLLDQKLKGKQEI 168


>gi|261368110|ref|ZP_05980993.1| NADH dehydrogenase I, B subunit [Subdoligranulum variabile DSM
           15176]
 gi|282569868|gb|EFB75403.1| NADH dehydrogenase I, B subunit [Subdoligranulum variabile DSM
           15176]
          Length = 152

 Score =  159 bits (403), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 40/130 (30%), Positives = 76/130 (58%), Gaps = 3/130 (2%)

Query: 52  TGSLMWMTF---GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108
             S   + +       C +E++  + P+YD+ERFG      P Q+D++++ G + ++   
Sbjct: 5   AKSPWMLHYDASSCNGCDIEVLACTTPKYDIERFGIINTGDPFQADILLITGGVNSQCEG 64

Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168
            +R++Y+QMP P+ V+++G CA  GG +   Y++  G D ++PVD+YVPGC    +A+I 
Sbjct: 65  VVRQLYEQMPNPKVVVAVGICACTGGVFKDCYNIKGGIDTVIPVDVYVPGCAARPQAIID 124

Query: 169 GILLLQKKIR 178
           G++   + + 
Sbjct: 125 GVVKALEILE 134


>gi|29143108|ref|NP_806450.1| formate hydrogenlyase subunit 7 [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|29138741|gb|AAO70310.1| formate hydrogenlyase subunit 7 [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
          Length = 255

 Score =  159 bits (403), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 52/150 (34%), Positives = 76/150 (50%), Gaps = 5/150 (3%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPR 91
              +         L    R+  +  +  G    C +E+     P +D ERFG     SPR
Sbjct: 18  TVDESIASMKASLLKNIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPR 77

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
            +D+++  G +T  M S   R +   P+P+  IS G+C N GG +H  Y V  G D+IVP
Sbjct: 78  HADILLFTGVVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVP 137

Query: 152 VDIYVPGCPPTAEALIYGILL----LQKKI 177
           VD+Y+PGCPPT  A +YG  +    L++KI
Sbjct: 138 VDVYIPGCPPTPAATLYGFAMALGLLEQKI 167


>gi|296104395|ref|YP_003614541.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Enterobacter
           cloacae subsp. cloacae ATCC 13047]
 gi|295058854|gb|ADF63592.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Enterobacter
           cloacae subsp. cloacae ATCC 13047]
          Length = 255

 Score =  159 bits (403), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 52/150 (34%), Positives = 76/150 (50%), Gaps = 5/150 (3%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPR 91
              +         L    R+  +  +  G    C +E+     P +D ERFG     SPR
Sbjct: 18  TVEESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPR 77

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
            +D+++  G +T  M S   R +   P+P+  IS G+C N GG +H  Y V  G D+IVP
Sbjct: 78  HADILLFTGAVTRAMRSPALRAWQSTPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVP 137

Query: 152 VDIYVPGCPPTAEALIYGILL----LQKKI 177
           VD+Y+PGCPPT  A +YG  +    L++KI
Sbjct: 138 VDVYIPGCPPTPAATLYGFAMALGLLEQKI 167


>gi|152971578|ref|YP_001336687.1| hypothetical protein KPN_03056 [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|206580829|ref|YP_002236935.1| formate hydrogenlyase, subunit G [Klebsiella pneumoniae 342]
 gi|238896176|ref|YP_002920912.1| hydrogenase 3 small subunit [Klebsiella pneumoniae NTUH-K2044]
 gi|290511028|ref|ZP_06550397.1| formate hydrogenlyase subunit 7 hycG [Klebsiella sp. 1_1_55]
 gi|150956427|gb|ABR78457.1| hypothetical protein KPN_03056 [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|206569887|gb|ACI11663.1| formate hydrogenlyase, subunit G [Klebsiella pneumoniae 342]
 gi|238548494|dbj|BAH64845.1| hydrogenase 3 small subunit [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
 gi|289776021|gb|EFD84020.1| formate hydrogenlyase subunit 7 hycG [Klebsiella sp. 1_1_55]
          Length = 255

 Score =  159 bits (403), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 52/150 (34%), Positives = 76/150 (50%), Gaps = 5/150 (3%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPR 91
              +         L    R+  +  +  G    C +E+     P +D ERFG     SPR
Sbjct: 18  TVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPR 77

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
            +D+++  G +T  M S   R +   P+P+  IS G+C N GG +H  Y V  G D+IVP
Sbjct: 78  HADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVP 137

Query: 152 VDIYVPGCPPTAEALIYGILL----LQKKI 177
           VD+Y+PGCPPT  A +YG  +    L++KI
Sbjct: 138 VDVYIPGCPPTPAATLYGFAMALGLLEQKI 167


>gi|238761067|ref|ZP_04622044.1| Formate hydrogenlyase subunit 7 [Yersinia kristensenii ATCC 33638]
 gi|238761320|ref|ZP_04622296.1| Formate hydrogenlyase subunit 7 [Yersinia kristensenii ATCC 33638]
 gi|238700294|gb|EEP93035.1| Formate hydrogenlyase subunit 7 [Yersinia kristensenii ATCC 33638]
 gi|238700547|gb|EEP93287.1| Formate hydrogenlyase subunit 7 [Yersinia kristensenii ATCC 33638]
          Length = 254

 Score =  159 bits (403), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 52/142 (36%), Positives = 79/142 (55%), Gaps = 5/142 (3%)

Query: 46  LVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTN 104
           L    R+  +  +  G    C +E+  +  P +D ERFG    ASPR +D+++  G +T 
Sbjct: 19  LKDIKRSAYVYRVDCGGCNGCEIEIFSSITPVFDTERFGIKVVASPRHADILLFTGAVTR 78

Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164
            M +   R Y+  P+P+  +S G+C  GGG +H  Y V  G D IVP+D+Y+PGCPPT  
Sbjct: 79  AMRTPALRAYESAPDPKICVSYGACGCGGGIFHDLYCVWGGSDTIVPIDVYIPGCPPTPA 138

Query: 165 ALIYGIL----LLQKKIRRVGN 182
           A IYG      LL++K++   +
Sbjct: 139 ATIYGFAVALGLLEQKLKAEDH 160


>gi|270308166|ref|YP_003330224.1| hydrogenase, EchC subunit [Dehalococcoides sp. VS]
 gi|270154058|gb|ACZ61896.1| hydrogenase, EchC subunit [Dehalococcoides sp. VS]
          Length = 155

 Score =  159 bits (403), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 46/131 (35%), Positives = 76/131 (58%), Gaps = 3/131 (2%)

Query: 45  QLVTWARTGSLMWMTF---GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGT 101
             VT ++  S   + F       C +E++    P YD+ERFG     +P+ SDV++V G 
Sbjct: 2   DFVTKSQIKSPWLLHFDCGSCNGCDIEILACLTPIYDVERFGIVNMGNPKHSDVLLVTGP 61

Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP 161
              +    L+ +Y QMP+P+ VI +G+C   GG +H   +++ G D+++PVD+YVPGC  
Sbjct: 62  ANKRNYRVLQNLYQQMPDPKVVIVIGTCGCSGGVFHNCPNILGGVDKVIPVDVYVPGCAA 121

Query: 162 TAEALIYGILL 172
             EA+I G+++
Sbjct: 122 RPEAIIDGVVM 132


>gi|73749343|ref|YP_308582.1| hydrogenase, group 4, HycG subunit [Dehalococcoides sp. CBDB1]
 gi|147669953|ref|YP_001214771.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Dehalococcoides sp.
           BAV1]
 gi|73661059|emb|CAI83666.1| hydrogenase, group 4, HycG subunit [Dehalococcoides sp. CBDB1]
 gi|146270901|gb|ABQ17893.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Dehalococcoides sp.
           BAV1]
          Length = 171

 Score =  159 bits (403), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 56/178 (31%), Positives = 95/178 (53%), Gaps = 9/178 (5%)

Query: 3   LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62
           +  V   +   +    +   DA+F ++       GF + S    + + R+ ++  +  G 
Sbjct: 1   MKNVLNNMFGPKICKQMPLGDAEFDKL-------GFALKSEINTI-FGRSLAIRALDSGS 52

Query: 63  -ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPR 121
                +E+   S P YD+ERFG +  ASPR +D++IV G +T  MA A+R+ +D MP P+
Sbjct: 53  DNAAEIELNNLSNPYYDVERFGISFVASPRHADILIVTGAVTQNMAIAVRKTFDAMPSPK 112

Query: 122 YVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
            VI++G  A  GG     Y V+ G D+I+PV++ +PG PP    +I  +L L + +R+
Sbjct: 113 LVIALGDDACSGGIASGGYGVLGGVDKILPVNLKIPGNPPEPAQIINSLLGLMQSLRK 170


>gi|206890862|ref|YP_002248820.1| hydrogenase-4 component I [Thermodesulfovibrio yellowstonii DSM
           11347]
 gi|206742800|gb|ACI21857.1| hydrogenase-4 component I [Thermodesulfovibrio yellowstonii DSM
           11347]
          Length = 156

 Score =  159 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 51/132 (38%), Positives = 80/132 (60%), Gaps = 7/132 (5%)

Query: 54  SLMWMT---FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASAL 110
           S+            C +E++    P YD+ERFG    +SPR +D ++++G +T      +
Sbjct: 15  SVWIFHVNTGACNGCDIELLDVLTPYYDIERFGMKAVSSPRHADALVISGPVTRPTVEFV 74

Query: 111 RRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGI 170
           + VY+  PEP+ VI++GSCA  GG +  SY+VV G D+I+PV +Y+PGCPP  EA+++GI
Sbjct: 75  KSVYEATPEPKIVIALGSCATAGGIWFDSYNVVGGVDKIIPVHLYIPGCPPRPEAILFGI 134

Query: 171 LLL----QKKIR 178
                  +KKI+
Sbjct: 135 AQALGISKKKIK 146


>gi|284006929|emb|CBA72200.1| hydrogenase-4 component I [Arsenophonus nasoniae]
          Length = 255

 Score =  159 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 51/137 (37%), Positives = 75/137 (54%), Gaps = 5/137 (3%)

Query: 46  LVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTN 104
           L    R+  +  +  G    C +E+     P +D ERFG     SPR +D+++  G +T 
Sbjct: 31  LKKIKRSAYVYRVDCGGCNGCEIEIFATLSPMFDAERFGIKVVPSPRHADILLFTGAVTR 90

Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164
            M +   R +   P+P+  IS G+C N GG +H  Y V  G D+IVPVD+Y+PGCPPT  
Sbjct: 91  AMRTPALRAWHSAPDPKIAISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPA 150

Query: 165 ALIYGILL----LQKKI 177
           A +YG  +    L++KI
Sbjct: 151 ATLYGFAMALGLLEQKI 167


>gi|213417095|ref|ZP_03350239.1| formate hydrogenlyase subunit 7 [Salmonella enterica subsp.
           enterica serovar Typhi str. E01-6750]
          Length = 229

 Score =  159 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 52/150 (34%), Positives = 76/150 (50%), Gaps = 5/150 (3%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPR 91
              +         L    R+  +  +  G    C +E+     P +D ERFG     SPR
Sbjct: 18  TVDESIASMKASLLKNIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPR 77

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
            +D+++  G +T  M S   R +   P+P+  IS G+C N GG +H  Y V  G D+IVP
Sbjct: 78  HADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVP 137

Query: 152 VDIYVPGCPPTAEALIYGILL----LQKKI 177
           VD+Y+PGCPPT  A +YG  +    L++KI
Sbjct: 138 VDVYIPGCPPTPAATLYGFAMALGLLEQKI 167


>gi|313683183|ref|YP_004060921.1| ech hydrogenase subunit c [Sulfuricurvum kujiense DSM 16994]
 gi|313156043|gb|ADR34721.1| ech hydrogenase subunit C [Sulfuricurvum kujiense DSM 16994]
          Length = 173

 Score =  159 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 48/139 (34%), Positives = 78/139 (56%), Gaps = 7/139 (5%)

Query: 51  RTGSLMWMTF---GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMA 107
           R  S   + +       C +E++ A  P+YDLERFG     +P+QSD+ +V G +T +  
Sbjct: 8   RKKSPWVLHYNAGSCNGCDIEILAALSPKYDLERFGVINTGNPKQSDIFLVTGPVTYRSR 67

Query: 108 SALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALI 167
             L  +Y Q+PEP+ V+++GSC   GG +   Y+V  G DR +PVD+YVPGC  + + +I
Sbjct: 68  ERLVELYSQIPEPKVVVAVGSCTTTGGVFRGMYNVEDGIDRYIPVDVYVPGCASSPQLII 127

Query: 168 YGILL----LQKKIRRVGN 182
             ++     L+ K + +  
Sbjct: 128 DALVKAGEILESKSKEIEK 146


>gi|261342161|ref|ZP_05970019.1| hydrogenase-4 component I [Enterobacter cancerogenus ATCC 35316]
 gi|288315494|gb|EFC54432.1| hydrogenase-4 component I [Enterobacter cancerogenus ATCC 35316]
          Length = 255

 Score =  159 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 52/150 (34%), Positives = 76/150 (50%), Gaps = 5/150 (3%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPR 91
              +         L    R+  +  +  G    C +E+     P +D ERFG     SPR
Sbjct: 18  TVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPR 77

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
            +D+++  G +T  M S   R +   P+P+  IS G+C N GG +H  Y V  G D+IVP
Sbjct: 78  HADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVP 137

Query: 152 VDIYVPGCPPTAEALIYGILL----LQKKI 177
           VD+Y+PGCPPT  A +YG  +    L++KI
Sbjct: 138 VDVYIPGCPPTPAATLYGFAMALGLLEQKI 167


>gi|148791384|gb|ABR12484.1| hydrogenase 3 small subunit [Klebsiella oxytoca]
          Length = 255

 Score =  159 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 52/150 (34%), Positives = 76/150 (50%), Gaps = 5/150 (3%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPR 91
              +         L    R+  +  +  G    C +E+     P +D ERFG     SPR
Sbjct: 18  TVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPR 77

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
            +D+++  G +T  M S   R +   P+P+  IS G+C N GG +H  Y V  G D+IVP
Sbjct: 78  HADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVP 137

Query: 152 VDIYVPGCPPTAEALIYGILL----LQKKI 177
           VD+Y+PGCPPT  A +YG  +    L++KI
Sbjct: 138 VDVYIPGCPPTPAATLYGFAMALGLLEQKI 167


>gi|324497290|gb|ADY39445.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [bacterium
           enrichment culture clone P24-9H]
          Length = 255

 Score =  159 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 52/150 (34%), Positives = 76/150 (50%), Gaps = 5/150 (3%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPR 91
              +         L    R+  +  +  G    C +E+     P +D ERFG     SPR
Sbjct: 18  TVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPR 77

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
            +D+++  G +T  M S   R +   P+P+  IS G+C N GG +H  Y V  G D+IVP
Sbjct: 78  HADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVP 137

Query: 152 VDIYVPGCPPTAEALIYGILL----LQKKI 177
           VD+Y+PGCPPT  A +YG  +    L++KI
Sbjct: 138 VDVYIPGCPPTPAATLYGFAMALGLLEQKI 167


>gi|288961303|ref|YP_003451642.1| NADH ubiquinone oxidoreductase [Azospirillum sp. B510]
 gi|288913611|dbj|BAI75098.1| NADH ubiquinone oxidoreductase [Azospirillum sp. B510]
          Length = 259

 Score =  159 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 51/129 (39%), Positives = 75/129 (58%), Gaps = 4/129 (3%)

Query: 60  FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119
            G   C +E+  +  P +D ERFG    ASPR +D+++  G +T  M     R Y+  P+
Sbjct: 33  GGCNGCEIEIFSSITPVFDAERFGIKVVASPRHADILLFTGAVTRSMRMPALRAYEAAPD 92

Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQK 175
           P+ V+S G+C   GG +H  Y V  G D IVPVD+Y+PGCPPT  A I+G      LL++
Sbjct: 93  PKIVVSYGACGCTGGIFHDLYCVWGGTDNIVPVDVYIPGCPPTPAATIHGFAVALGLLEQ 152

Query: 176 KIRRVGNVK 184
           K++   +V+
Sbjct: 153 KLKAEIHVE 161


>gi|218696313|ref|YP_002403980.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit
           [Escherichia coli 55989]
 gi|218353045|emb|CAU98870.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit
           [Escherichia coli 55989]
          Length = 255

 Score =  159 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 52/154 (33%), Positives = 76/154 (49%), Gaps = 5/154 (3%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPR 91
              +         L    R+  +  +  G    C +E+     P +D ERFG     SPR
Sbjct: 18  TVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPR 77

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
            +D+++  G +T  M S     +   P+P+  IS G+C N GG +H  Y V  G D+IVP
Sbjct: 78  HADILLFTGAVTRAMRSPALCAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVP 137

Query: 152 VDIYVPGCPPTAEALIYGILL----LQKKIRRVG 181
           VD+Y+PGCPPT  A +YG  +    L++KI   G
Sbjct: 138 VDVYIPGCPPTPAATLYGFAMALGLLEQKIHARG 171


>gi|31580608|gb|AAP51027.1| EchC [Desulfovibrio gigas]
          Length = 147

 Score =  158 bits (401), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 48/135 (35%), Positives = 77/135 (57%), Gaps = 4/135 (2%)

Query: 45  QLVTWARTGSLMWMTFGL---ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGT 101
             +  +R  S   M F       C +E +    P      FG     +P+ +D++IV+GT
Sbjct: 6   DFIKSSRIKSPWLMHFDCGFCNGCDIETLACLDPHLRRGTFGIVNVGNPKHADILIVSGT 65

Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP 161
           + ++    L  +Y+QMP P+ V+++G+C   GG +  + +VV G D+++PVD YVPGCPP
Sbjct: 66  VNHRNKKVLANLYEQMPHPKVVVAIGACGLSGGVFREAPNVVGGIDKVIPVDAYVPGCPP 125

Query: 162 TAEALIYGILL-LQK 175
             EA+I G++L LQK
Sbjct: 126 KPEAIIDGVVLGLQK 140


>gi|82545206|ref|YP_409153.1| hydrogenase activity [Shigella boydii Sb227]
 gi|81246617|gb|ABB67325.1| hydrogenase activity [Shigella boydii Sb227]
 gi|332092087|gb|EGI97165.1| formate hydrogenlyase subunit 7 [Shigella boydii 3594-74]
          Length = 255

 Score =  158 bits (401), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 53/154 (34%), Positives = 76/154 (49%), Gaps = 5/154 (3%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPR 91
              +         L    R+  +  +  G    C +E+     P +D ERFG     SPR
Sbjct: 18  TVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPR 77

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
            +D+++  G +T  M S   R +   P+P+  IS G+C N GG +H  Y V  G D+IVP
Sbjct: 78  HADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVP 137

Query: 152 VDIYVPGCPPTAEALIYGILL----LQKKIRRVG 181
           VD+Y+PGCPPT  A +YG  +    L +KI   G
Sbjct: 138 VDVYIPGCPPTPAATLYGFAMALGLLVQKIHARG 171


>gi|123443021|ref|YP_001008384.1| hydrogenase-4 component I [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122089982|emb|CAL12839.1| hydrogenase-4 component I [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 268

 Score =  158 bits (401), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 52/138 (37%), Positives = 78/138 (56%), Gaps = 5/138 (3%)

Query: 46  LVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTN 104
           L    R+  +  +  G    C +E+  +  P +D ERFG    ASPR +D+++  G +T 
Sbjct: 34  LKDIKRSAYVYRVDCGGCNGCEIEIFSSITPLFDTERFGIKVVASPRHADILLFTGAVTR 93

Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164
            M +   R Y+  P+P+  +S G+C  GGG +H  Y V  G D IVP+D+Y+PGCPPT  
Sbjct: 94  AMRTPALRAYESAPDPKICVSYGACGCGGGIFHDLYCVWGGSDTIVPIDVYIPGCPPTPA 153

Query: 165 ALIYGIL----LLQKKIR 178
           A IYG      LL++K++
Sbjct: 154 ATIYGFAVALGLLEQKLK 171


>gi|157370668|ref|YP_001478657.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Serratia
           proteamaculans 568]
 gi|157322432|gb|ABV41529.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Serratia
           proteamaculans 568]
          Length = 265

 Score =  158 bits (401), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 52/123 (42%), Positives = 70/123 (56%), Gaps = 4/123 (3%)

Query: 60  FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119
            G   C +E+  A  P +D ERFG     SPR +D+++  G +T  M     R +   P+
Sbjct: 47  GGCNGCEIEIFAAVSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRIPAIRAWQASPD 106

Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILL----LQK 175
           P+  IS G+C N GG +H  Y V  G DRIVPVD+Y+PGCPPT  A IYG  +    L +
Sbjct: 107 PKISISYGACGNSGGIFHDLYCVWGGTDRIVPVDVYIPGCPPTPAATIYGFAMALGLLDQ 166

Query: 176 KIR 178
           KI+
Sbjct: 167 KIK 169


>gi|238793444|ref|ZP_04637069.1| Formate hydrogenlyase subunit 7 [Yersinia intermedia ATCC 29909]
 gi|238727217|gb|EEQ18746.1| Formate hydrogenlyase subunit 7 [Yersinia intermedia ATCC 29909]
          Length = 262

 Score =  158 bits (401), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 52/138 (37%), Positives = 78/138 (56%), Gaps = 5/138 (3%)

Query: 46  LVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTN 104
           L    R+  +  +  G    C +E+  +  P +D ERFG    ASPR +D+++  G +T 
Sbjct: 27  LKDIKRSAYVYRVDCGGCNGCEIEIFSSITPLFDTERFGIKVVASPRHADILLFTGAVTR 86

Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164
            M +   R Y+  P+P+  +S G+C  GGG +H  Y V  G D IVP+D+Y+PGCPPT  
Sbjct: 87  AMRAPALRAYESAPDPKICVSYGACGCGGGIFHDLYCVWGGSDTIVPIDVYIPGCPPTPA 146

Query: 165 ALIYGIL----LLQKKIR 178
           A IYG      LL++K++
Sbjct: 147 ATIYGFAVALGLLEQKLK 164


>gi|261345089|ref|ZP_05972733.1| hydrogenase-4 component I [Providencia rustigianii DSM 4541]
 gi|282566773|gb|EFB72308.1| hydrogenase-4 component I [Providencia rustigianii DSM 4541]
          Length = 260

 Score =  158 bits (401), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 53/137 (38%), Positives = 76/137 (55%), Gaps = 5/137 (3%)

Query: 46  LVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTN 104
           L    R+  +  +  G    C +E+  A  P +D ERFG    ASPR +D+++  G +T 
Sbjct: 30  LKDIKRSAYVYRVDCGGCNGCEIEIFSAITPVFDAERFGIKVVASPRHADILLFTGAVTR 89

Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164
            M     R Y+  P+P+  IS G+C  GGG +H  Y V  G + IVP+D+++PGCPPT  
Sbjct: 90  AMRMPALRAYESAPDPKICISYGACGCGGGIFHDLYCVWGGSEHIVPIDVWIPGCPPTPA 149

Query: 165 ALIYGIL----LLQKKI 177
           A IYG      LLQ+K+
Sbjct: 150 ATIYGFAVALGLLQQKL 166


>gi|224087817|ref|XP_002194923.1| PREDICTED: similar to NADH-ubiquinone oxidoreductase Fe-S protein 7
           [Taeniopygia guttata]
          Length = 183

 Score =  158 bits (401), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 77/174 (44%), Positives = 96/174 (55%), Gaps = 40/174 (22%)

Query: 12  SGQSSCSLEKVDADFSRISSEITHKG-FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMM 70
           +  SS  ++K  A   R S   + +G +++  +D LV WAR  SL  MTFGLACCAVEMM
Sbjct: 44  AADSSVQVQKSSAVVPRKSYVPSSRGEYVIAKLDDLVNWARRSSLWPMTFGLACCAVEMM 103

Query: 71  QASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCA 130
             + PRYD++RFG   RASPRQ+DVMIVAGTLTNKMA ALR       +P          
Sbjct: 104 HMAAPRYDMDRFGVVFRASPRQADVMIVAGTLTNKMAPALR------KKPP--------- 148

Query: 131 NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
             G                         CPPTAEAL+YGIL LQ+KI+R   ++
Sbjct: 149 CRG------------------------RCPPTAEALLYGILQLQRKIKREKRMQ 178


>gi|148699634|gb|EDL31581.1| NADH dehydrogenase (ubiquinone) Fe-S protein 7, isoform CRA_c [Mus
           musculus]
          Length = 167

 Score =  158 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 80/92 (86%), Positives = 87/92 (94%)

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           +DVMIVAGTLTNKMA ALR+VYDQMPEPRYV+SMGSCANGGGYYHYSYSVVRGCDRIVPV
Sbjct: 71  ADVMIVAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPV 130

Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           DIYVPGCPPTAEAL+YGIL LQ+KI+R   +K
Sbjct: 131 DIYVPGCPPTAEALLYGILQLQRKIKREQKLK 162


>gi|237729674|ref|ZP_04560155.1| hydrogenase activity [Citrobacter sp. 30_2]
 gi|226908280|gb|EEH94198.1| hydrogenase activity [Citrobacter sp. 30_2]
          Length = 255

 Score =  158 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 52/150 (34%), Positives = 77/150 (51%), Gaps = 5/150 (3%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPR 91
              +         L +  R+  +  +  G    C +E+     P +D ERFG     SPR
Sbjct: 18  TVDESIASMKASLLKSIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPR 77

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
            +D+++  G +T  M S   R +   P+P+  IS G+C N GG +H  Y V  G D+IVP
Sbjct: 78  HADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVP 137

Query: 152 VDIYVPGCPPTAEALIYGILL----LQKKI 177
           VD+Y+PGCPPT  A +YG  +    L++KI
Sbjct: 138 VDVYIPGCPPTPAATLYGFAMALGLLEQKI 167


>gi|289549193|ref|YP_003474181.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Thermocrinis albus
           DSM 14484]
 gi|289182810|gb|ADC90054.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Thermocrinis albus
           DSM 14484]
          Length = 163

 Score =  158 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 46/157 (29%), Positives = 81/157 (51%), Gaps = 1/157 (0%)

Query: 26  FSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGF 84
           F +   +   +  ++ + + +    ++  +  +  G    C VE+     P Y +E FG 
Sbjct: 4   FFKKVLKRKRRELVLKNAEGIAGLGKSLYVRHVDSGSCNACEVEVAALGNPHYSIESFGI 63

Query: 85  APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR 144
              ASP+ +DV++V G +T  M +AL++ YD  P P++VI++G C     ++  SYSV  
Sbjct: 64  RFVASPKHADVLLVTGCVTRNMLTALKKAYDNTPSPKWVITVGDCTESCPFFKDSYSVEG 123

Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
              + +PV ++VPGCPP    +I G + L   I+R  
Sbjct: 124 PVSKHIPVHLHVPGCPPEPSEIISGFIRLMNLIQREK 160


>gi|297720477|ref|NP_001172600.1| Os01g0791600 [Oryza sativa Japonica Group]
 gi|255673769|dbj|BAH91330.1| Os01g0791600 [Oryza sativa Japonica Group]
          Length = 379

 Score =  158 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 54/101 (53%), Positives = 77/101 (76%), Gaps = 1/101 (0%)

Query: 74  MPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGG 133
             R+D +R+G  PR+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   G
Sbjct: 150 GSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITG 209

Query: 134 GYYH-YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLL 173
           G +   SYS VRG D+++PVD+Y+PGCPP  EA+I  +  L
Sbjct: 210 GMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEAVIDALTKL 250


>gi|325294933|ref|YP_004281447.1| NADH dehydrogenase (quinone) [Desulfurobacterium thermolithotrophum
           DSM 11699]
 gi|325065381|gb|ADY73388.1| NADH dehydrogenase (quinone) [Desulfurobacterium thermolithotrophum
           DSM 11699]
          Length = 182

 Score =  158 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 49/135 (36%), Positives = 79/135 (58%), Gaps = 3/135 (2%)

Query: 51  RTGSLMWMTF---GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMA 107
           RT S   + +       C VE++    P+YD+ERFG   R +P+QSD+++V G +T +  
Sbjct: 7   RTKSPWILHYNTGSCNGCDVEILACLAPKYDIERFGILNRGNPKQSDILLVTGPVTKRAR 66

Query: 108 SALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALI 167
             L R+Y +MPEP+ V+++G CA  GG +   Y+V  G D+ +PVD+YVPGC    E +I
Sbjct: 67  ERLIRLYMEMPEPKVVVAVGVCACTGGVFRGMYNVENGVDKFIPVDVYVPGCAARPENII 126

Query: 168 YGILLLQKKIRRVGN 182
            G++   + + +   
Sbjct: 127 DGVVRALEILEKKKK 141


>gi|311278313|ref|YP_003940544.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Enterobacter cloacae
           SCF1]
 gi|308747508|gb|ADO47260.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Enterobacter cloacae
           SCF1]
          Length = 255

 Score =  158 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 52/150 (34%), Positives = 76/150 (50%), Gaps = 5/150 (3%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPR 91
              +         L    R+  +  +  G    C +E+     P +D ERFG     SPR
Sbjct: 18  TVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPR 77

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
            +D+++  G +T  M S   R +   P+P+  IS G+C N GG +H  Y V  G D+IVP
Sbjct: 78  HADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVP 137

Query: 152 VDIYVPGCPPTAEALIYGILL----LQKKI 177
           VD+Y+PGCPPT  A +YG  +    L++KI
Sbjct: 138 VDVYIPGCPPTPAATLYGFAMALGLLEQKI 167


>gi|312880265|ref|ZP_07740065.1| Membrane bound hydrogenase subunit mbhJ [Aminomonas paucivorans DSM
           12260]
 gi|310783556|gb|EFQ23954.1| Membrane bound hydrogenase subunit mbhJ [Aminomonas paucivorans DSM
           12260]
          Length = 153

 Score =  158 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 46/132 (34%), Positives = 74/132 (56%), Gaps = 3/132 (2%)

Query: 53  GSLMWMTF---GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASA 109
            SL            C +E++    PRYD+ER G     SPR +D ++V G +T+ M   
Sbjct: 12  RSLWVFHCNSGSCNGCDIEIVATLTPRYDIERLGMKLVGSPRHADALLVTGPVTHYMVER 71

Query: 110 LRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYG 169
           ++R++ Q+P+P+ VI +G+C   G  ++ SY++    DR++PVD+YV GCPP  EA+I G
Sbjct: 72  VKRIHAQIPDPKVVICVGNCGCSGDVFYKSYNLEGPVDRVLPVDVYVHGCPPRPEAMIDG 131

Query: 170 ILLLQKKIRRVG 181
           +      + R  
Sbjct: 132 VAQAVALLERRR 143


>gi|238788858|ref|ZP_04632649.1| Formate hydrogenlyase subunit 7 [Yersinia frederiksenii ATCC 33641]
 gi|238723163|gb|EEQ14812.1| Formate hydrogenlyase subunit 7 [Yersinia frederiksenii ATCC 33641]
          Length = 224

 Score =  158 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 51/123 (41%), Positives = 73/123 (59%), Gaps = 4/123 (3%)

Query: 60  FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119
            G   C +E+  A  P +D ERFG    ASPR +D+++  G +T  M +   R Y+  P+
Sbjct: 4   GGCNGCEIEIFAAITPLFDTERFGIKVVASPRHADILLFTGAVTRAMRTPALRAYESAPD 63

Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQK 175
           P+  +S G+C  GGG +H  Y V  G D IVP+D+Y+PGCPPT  A IYG      LL++
Sbjct: 64  PKICVSYGACGCGGGIFHDLYCVWGGSDTIVPIDVYIPGCPPTPAATIYGFAVALGLLEQ 123

Query: 176 KIR 178
           K++
Sbjct: 124 KLK 126


>gi|262043973|ref|ZP_06017057.1| hydrogenase-4 component I [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259038699|gb|EEW39886.1| hydrogenase-4 component I [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 255

 Score =  158 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 50/122 (40%), Positives = 70/122 (57%), Gaps = 4/122 (3%)

Query: 60  FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119
            G   C +E+     P +D ERFG     SPR +D+++  G +T  M S   R +   P+
Sbjct: 46  GGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPD 105

Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILL----LQK 175
           P+  IS G+C N GG +H  Y V  G D+IVPVD+Y+PGCPPT  A +YG  +    L++
Sbjct: 106 PKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQ 165

Query: 176 KI 177
           KI
Sbjct: 166 KI 167


>gi|163785059|ref|ZP_02179780.1| hypothetical protein HG1285_04403 [Hydrogenivirga sp. 128-5-R1-1]
 gi|159879672|gb|EDP73455.1| hypothetical protein HG1285_04403 [Hydrogenivirga sp. 128-5-R1-1]
          Length = 171

 Score =  158 bits (400), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 44/125 (35%), Positives = 73/125 (58%), Gaps = 1/125 (0%)

Query: 52  TGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASAL 110
           + ++  +  G    C  E+   S P YD+ERFG    ASP+ +D +++ G +T  M  A+
Sbjct: 43  SFAIREVDSGSCNACEYEISALSNPYYDVERFGIKFVASPKHADAIMITGCMTRNMYKAV 102

Query: 111 RRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGI 170
            R Y+ +PEP++VI++G C   GG +  SY+ + G    +PVD+++ GCPP    +I G+
Sbjct: 103 LRAYENVPEPKFVIAVGDCVLDGGVFKGSYATIDGVQDKLPVDVWIKGCPPEPIDIISGV 162

Query: 171 LLLQK 175
           L L +
Sbjct: 163 LKLIE 167


>gi|21228424|ref|NP_634346.1| ech hydrogenase subunit [Methanosarcina mazei Go1]
 gi|20906901|gb|AAM32018.1| Ech Hydrogenase, Subunit [Methanosarcina mazei Go1]
          Length = 156

 Score =  158 bits (399), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 46/123 (37%), Positives = 78/123 (63%), Gaps = 3/123 (2%)

Query: 52  TGSLMWMTF---GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108
             S   +         C +E++    P YD ERFG     +P+Q+D+M+V G++  K  +
Sbjct: 4   AKSPWIIHVNCNSCNGCDIEVVACLTPLYDAERFGVLNIGTPKQADIMVVTGSVNYKNVN 63

Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168
            L+ +Y+Q+P+P+ V+++G+CA+ GG +H  Y+V+ G D+I+PVD YVPGC P  EA++ 
Sbjct: 64  VLKNLYNQIPDPKVVLAVGACASTGGIFHNCYNVIGGVDQIIPVDAYVPGCCPRPEAILD 123

Query: 169 GIL 171
           G++
Sbjct: 124 GVV 126


>gi|238755287|ref|ZP_04616631.1| Formate hydrogenlyase subunit 7 [Yersinia ruckeri ATCC 29473]
 gi|238706521|gb|EEP98894.1| Formate hydrogenlyase subunit 7 [Yersinia ruckeri ATCC 29473]
          Length = 265

 Score =  158 bits (399), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 52/122 (42%), Positives = 70/122 (57%), Gaps = 4/122 (3%)

Query: 60  FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119
            G   C +E+  A  P +D ERFG     SPR +D+++  G +T  M     R +D  P+
Sbjct: 47  GGCNGCEIEIFAAISPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRIPALRAWDSAPD 106

Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILL----LQK 175
           P+  IS G+C N GG +H  Y V  G D+IVPVD+Y+PGCPPT  A IYG  +    L +
Sbjct: 107 PKISISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATIYGFAMALGLLDQ 166

Query: 176 KI 177
           KI
Sbjct: 167 KI 168


>gi|41686|emb|CAA35552.1| hycG [Escherichia coli]
 gi|1093500|prf||2104213G hycG gene
          Length = 255

 Score =  158 bits (399), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 53/154 (34%), Positives = 77/154 (50%), Gaps = 5/154 (3%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPR 91
              +         L    R+  +  +  G    C +E+     P +D ERFG     SPR
Sbjct: 18  TVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFGTLSPLFDAERFGIKVVPSPR 77

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
            +D+++  G +T  M S   R +   P+P+  IS G+C N GG +H  Y V  G D+IVP
Sbjct: 78  HADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVP 137

Query: 152 VDIYVPGCPPTAEALIYGILL----LQKKIRRVG 181
           VD+Y+PGCPPT  A +YG  +    L++KI   G
Sbjct: 138 VDVYIPGCPPTPAATLYGFAMALGLLEQKIHARG 171


>gi|238749929|ref|ZP_04611433.1| Formate hydrogenlyase subunit 7 [Yersinia rohdei ATCC 43380]
 gi|238711858|gb|EEQ04072.1| Formate hydrogenlyase subunit 7 [Yersinia rohdei ATCC 43380]
          Length = 236

 Score =  158 bits (399), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 51/138 (36%), Positives = 78/138 (56%), Gaps = 5/138 (3%)

Query: 46  LVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTN 104
           +    R+  +  +  G    C +E+  +  P +D ERFG    ASPR +D+++  G +T 
Sbjct: 1   MKDIKRSAYVYRVDCGGCNGCEIEIFSSITPVFDTERFGIKVVASPRHADILLFTGAVTR 60

Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164
            M +   R Y+  P+P+  +S G+C  GGG +H  Y V  G D IVP+D+Y+PGCPPT  
Sbjct: 61  AMRTPALRAYESAPDPKICVSYGACGCGGGIFHDLYCVWGGSDTIVPIDVYIPGCPPTPA 120

Query: 165 ALIYGIL----LLQKKIR 178
           A IYG      LL++K++
Sbjct: 121 ATIYGFAVALGLLEQKLK 138


>gi|50120178|ref|YP_049345.1| hydrogenase-4 component I [Pectobacterium atrosepticum SCRI1043]
 gi|49610704|emb|CAG74149.1| hydrogenase-4 component I [Pectobacterium atrosepticum SCRI1043]
          Length = 259

 Score =  158 bits (399), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 51/144 (35%), Positives = 80/144 (55%), Gaps = 5/144 (3%)

Query: 46  LVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTN 104
           L    R+  +  +  G    C +E+  A  P +D ERFG    ASPR +D+++  G +T 
Sbjct: 30  LKDIQRSAYVYRVDCGGCNGCEIEIFAAITPLFDAERFGIKVVASPRHADILLFTGAVTR 89

Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164
            M     R Y+  P+P+  IS G+C  GGG +H  Y V  G + IVP+D+++PGCPPT  
Sbjct: 90  AMRVPALRAYESAPDPKICISYGACGCGGGIFHDLYCVWGGSESIVPIDVWIPGCPPTPA 149

Query: 165 ALIYGIL----LLQKKIRRVGNVK 184
           A I+G      LL++K++   +++
Sbjct: 150 ATIHGFAVALGLLEQKLKGQDHIQ 173


>gi|293392055|ref|ZP_06636389.1| hydrogenase-4 component I [Aggregatibacter actinomycetemcomitans
           D7S-1]
 gi|290952589|gb|EFE02708.1| hydrogenase-4 component I [Aggregatibacter actinomycetemcomitans
           D7S-1]
          Length = 258

 Score =  158 bits (399), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 52/138 (37%), Positives = 76/138 (55%), Gaps = 5/138 (3%)

Query: 46  LVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTN 104
           L    R+  +  +  G    C +E+     P +D ERFG    ASPR +D+++  G +T 
Sbjct: 30  LKNIQRSAYVYRVDCGGCNGCEIEIFSTITPTFDAERFGIKVVASPRHADILLFTGAVTR 89

Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164
            M +   R Y   P+P+  IS G+C  GGG +H  Y V  G D+IVP+D+Y+PGCPPT  
Sbjct: 90  AMRTPAIRAYQAAPDPKICISYGACGCGGGIFHDLYCVWGGSDQIVPIDVYIPGCPPTPA 149

Query: 165 ALIYGILL----LQKKIR 178
           A IYG  +    L +K++
Sbjct: 150 ATIYGFAMALGLLDQKLK 167


>gi|261868405|ref|YP_003256327.1| hydrogenase-4 subunit I [Aggregatibacter actinomycetemcomitans
           D11S-1]
 gi|261413737|gb|ACX83108.1| hydrogenase-4 component I [Aggregatibacter actinomycetemcomitans
           D11S-1]
          Length = 258

 Score =  158 bits (399), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 52/138 (37%), Positives = 76/138 (55%), Gaps = 5/138 (3%)

Query: 46  LVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTN 104
           L    R+  +  +  G    C +E+     P +D ERFG    ASPR +D+++  G +T 
Sbjct: 30  LKNIQRSAYVYRVDCGGCNGCEIEIFSTITPTFDAERFGIKVVASPRHADILLFTGAVTR 89

Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164
            M +   R Y   P+P+  IS G+C  GGG +H  Y V  G D+IVP+D+Y+PGCPPT  
Sbjct: 90  AMRTPAMRAYQAAPDPKICISYGACGCGGGIFHDLYCVWGGSDQIVPIDVYIPGCPPTPA 149

Query: 165 ALIYGILL----LQKKIR 178
           A IYG  +    L +K++
Sbjct: 150 ATIYGFAMALGLLDQKLK 167


>gi|197286367|ref|YP_002152239.1| hydrogenase-4 component I [Proteus mirabilis HI4320]
 gi|227357421|ref|ZP_03841775.1| hydrogenase-4 component I [Proteus mirabilis ATCC 29906]
 gi|194683854|emb|CAR44984.1| hydrogenase-4 component I [Proteus mirabilis HI4320]
 gi|227162379|gb|EEI47379.1| hydrogenase-4 component I [Proteus mirabilis ATCC 29906]
          Length = 260

 Score =  157 bits (398), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 50/129 (38%), Positives = 74/129 (57%), Gaps = 4/129 (3%)

Query: 60  FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119
            G   C +E+  A  P +D ERFG    ASPR +D+++  G +T +M     R Y+  P+
Sbjct: 45  GGCNGCEIEIFSAITPVFDAERFGIKVVASPRHADILLFTGAVTRQMRVPALRAYESAPD 104

Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQK 175
           P+  IS G+C  GGG +H  Y V  G + IVP+D+++PGCPPT  A IYG      LL +
Sbjct: 105 PKICISYGACGCGGGIFHDLYCVWGGSETIVPIDVWIPGCPPTPAATIYGFAVALGLLDQ 164

Query: 176 KIRRVGNVK 184
           K++   + +
Sbjct: 165 KLKGQNHTE 173


>gi|333001926|gb|EGK21492.1| hydrogenase-4 component I [Shigella flexneri K-218]
          Length = 252

 Score =  157 bits (398), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 51/122 (41%), Positives = 72/122 (59%), Gaps = 4/122 (3%)

Query: 60  FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119
            G   C +E+  A  P +D ERFG    +SPR +D+++  GT+T  M     R Y+  P+
Sbjct: 42  GGCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGTVTRAMRMPALRAYESAPD 101

Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQK 175
            +  +S G+C  GGG +H  YSV  G D IVP+D+++PGCPPT  A I+G      LLQ+
Sbjct: 102 HKICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHGFAVALGLLQQ 161

Query: 176 KI 177
           KI
Sbjct: 162 KI 163


>gi|213610076|ref|ZP_03369902.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
          Length = 175

 Score =  157 bits (398), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 52/150 (34%), Positives = 76/150 (50%), Gaps = 5/150 (3%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPR 91
              +         L    R+  +  +  G    C +E+     P +D ERFG     SPR
Sbjct: 18  TVDESIASMKASLLKNIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPR 77

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
            +D+++  G +T  M S   R +   P+P+  IS G+C N GG +H  Y V  G D+IVP
Sbjct: 78  HADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVP 137

Query: 152 VDIYVPGCPPTAEALIYGILL----LQKKI 177
           VD+Y+PGCPPT  A +YG  +    L++KI
Sbjct: 138 VDVYIPGCPPTPAATLYGFAMALGLLEQKI 167


>gi|57233683|ref|YP_182267.1| hydrogenase, group 4, HycG subunit, putative [Dehalococcoides
           ethenogenes 195]
 gi|57224131|gb|AAW39188.1| hydrogenase, group 4, HycG subunit, putative [Dehalococcoides
           ethenogenes 195]
          Length = 171

 Score =  157 bits (397), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 57/178 (32%), Positives = 94/178 (52%), Gaps = 9/178 (5%)

Query: 3   LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62
           +  V   I   +    + K DADF ++       GF + +    V + R+ ++  +  G 
Sbjct: 1   MKNVLNNIFKPKVCRQMPKGDADFDKL-------GFALKTEIHAV-FGRSLAIRALDSGS 52

Query: 63  -ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPR 121
                +E+   S P YD+ERFG +  ASPR +D++IV G ++  MA A+R+ +D MP P+
Sbjct: 53  DNSAEIELNNLSNPYYDIERFGLSFVASPRHADILIVTGAVSQNMAIAVRKTFDAMPSPK 112

Query: 122 YVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
            VI++G  A G       Y V+ G D+I+PVD+ +PG PP    +I  +L L + + +
Sbjct: 113 LVIALGDDACGSSIVCGGYGVLGGVDKILPVDLKIPGNPPEPIQIITALLGLMRSLGK 170


>gi|213583852|ref|ZP_03365678.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
          Length = 174

 Score =  157 bits (397), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 52/150 (34%), Positives = 76/150 (50%), Gaps = 5/150 (3%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPR 91
              +         L    R+  +  +  G    C +E+     P +D ERFG     SPR
Sbjct: 18  TVDESIASMKASLLKNIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPR 77

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
            +D+++  G +T  M S   R +   P+P+  IS G+C N GG +H  Y V  G D+IVP
Sbjct: 78  HADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVP 137

Query: 152 VDIYVPGCPPTAEALIYGILL----LQKKI 177
           VD+Y+PGCPPT  A +YG  +    L++KI
Sbjct: 138 VDVYIPGCPPTPAATLYGFAMALGLLEQKI 167


>gi|146312833|ref|YP_001177907.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Enterobacter sp.
           638]
 gi|145319709|gb|ABP61856.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Enterobacter sp.
           638]
          Length = 255

 Score =  157 bits (397), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 52/150 (34%), Positives = 76/150 (50%), Gaps = 5/150 (3%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPR 91
              +         L    R+  +  +  G    C +E+     P +D ERFG     SPR
Sbjct: 18  TVDESIANMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPR 77

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
            +D+++  G +T  M S   R +   P+P+  IS G+C N GG +H  Y V  G D+IVP
Sbjct: 78  HADILLFTGAMTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVP 137

Query: 152 VDIYVPGCPPTAEALIYGILL----LQKKI 177
           VD+Y+PGCPPT  A +YG  +    L++KI
Sbjct: 138 VDVYIPGCPPTPAATLYGFAMALGLLEQKI 167


>gi|154150665|ref|YP_001404283.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Candidatus
           Methanoregula boonei 6A8]
 gi|153999217|gb|ABS55640.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Methanoregula
           boonei 6A8]
          Length = 172

 Score =  157 bits (397), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 54/167 (32%), Positives = 89/167 (53%), Gaps = 9/167 (5%)

Query: 10  IISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL-ACCAVE 68
           ++  + +  L   D +  RI  EI          +    + R+ ++  +  G      +E
Sbjct: 8   MLGKKVTGPLPVRDEELERIGREIRR--------EINARFGRSLAIRELDAGSDNAAEIE 59

Query: 69  MMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGS 128
           +   S   YD+ERFG +  ASPR +DV++V G +T  MA A ++ YD MP P++V+++G 
Sbjct: 60  INNLSNAYYDVERFGISFVASPRHADVLLVTGAITCNMAIAAQKTYDAMPSPKFVVAVGD 119

Query: 129 CANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175
            A  GG Y  +Y+V+ G D I PVD+ +PG PP    ++ G+L L +
Sbjct: 120 DACDGGIYKGTYAVLGGADAIFPVDLKIPGNPPAPIQILTGLLALMR 166


>gi|327252139|gb|EGE63811.1| hydrogenase-4 component I [Escherichia coli STEC_7v]
          Length = 249

 Score =  157 bits (397), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 50/122 (40%), Positives = 71/122 (58%), Gaps = 4/122 (3%)

Query: 60  FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119
            G   C +E+  A  P +D ERFG    +SPR +D+++  G +T  M     R Y+  P+
Sbjct: 39  GGCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMRMPALRAYESAPD 98

Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQK 175
            +  +S G+C  GGG +H  YSV  G D IVP+D+++PGCPPT  A I+G      LLQ+
Sbjct: 99  HKICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHGFAVALGLLQQ 158

Query: 176 KI 177
           KI
Sbjct: 159 KI 160


>gi|323170245|gb|EFZ55898.1| hydrogenase-4 component I [Escherichia coli LT-68]
          Length = 249

 Score =  157 bits (397), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 50/122 (40%), Positives = 71/122 (58%), Gaps = 4/122 (3%)

Query: 60  FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119
            G   C +E+  A  P +D ERFG    +SPR +D+++  G +T  M     R Y+  P+
Sbjct: 39  GGCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMRMPALRAYESAPD 98

Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQK 175
            +  +S G+C  GGG +H  YSV  G D IVP+D+++PGCPPT  A I+G      LLQ+
Sbjct: 99  HKICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHGFAVALGLLQQ 158

Query: 176 KI 177
           KI
Sbjct: 159 KI 160


>gi|238799239|ref|ZP_04642686.1| Formate hydrogenlyase subunit 7 [Yersinia mollaretii ATCC 43969]
 gi|238716904|gb|EEQ08773.1| Formate hydrogenlyase subunit 7 [Yersinia mollaretii ATCC 43969]
          Length = 250

 Score =  157 bits (396), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 53/138 (38%), Positives = 78/138 (56%), Gaps = 5/138 (3%)

Query: 46  LVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTN 104
           L    R+  +  +  G    C +E+  +  P +D ERFG    ASPR +D+++  G +T 
Sbjct: 15  LKDIKRSAYVYRVDCGGCNGCEIEIFSSITPLFDTERFGIKVVASPRHADILLFTGAVTR 74

Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164
            M S   R Y+  P+P+  +S G+C  GGG +H  Y V  G D IVP+D+Y+PGCPPT  
Sbjct: 75  AMRSPALRAYESAPDPKICVSYGACGCGGGIFHDLYCVWGGSDTIVPIDVYIPGCPPTPA 134

Query: 165 ALIYGIL----LLQKKIR 178
           A IYG      LL++K++
Sbjct: 135 ATIYGFAVALGLLEQKLK 152


>gi|312973273|ref|ZP_07787445.1| hydrogenase-4 component I [Escherichia coli 1827-70]
 gi|310331868|gb|EFP99103.1| hydrogenase-4 component I [Escherichia coli 1827-70]
          Length = 249

 Score =  157 bits (396), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 50/122 (40%), Positives = 71/122 (58%), Gaps = 4/122 (3%)

Query: 60  FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119
            G   C +E+  A  P +D ERFG    +SPR +D+++  G +T  M     R Y+  P+
Sbjct: 39  GGCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMRMPALRAYESAPD 98

Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQK 175
            +  +S G+C  GGG +H  YSV  G D IVP+D+++PGCPPT  A I+G      LLQ+
Sbjct: 99  HKICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHGFAVALGLLQQ 158

Query: 176 KI 177
           KI
Sbjct: 159 KI 160


>gi|323977333|gb|EGB72419.1| NADH ubiquinone oxidoreductase [Escherichia coli TW10509]
          Length = 252

 Score =  157 bits (396), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 50/122 (40%), Positives = 71/122 (58%), Gaps = 4/122 (3%)

Query: 60  FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119
            G   C +E+  A  P +D ERFG    +SPR +D+++  G +T  M     R Y+  P+
Sbjct: 42  GGCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMRMPALRAYESAPD 101

Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQK 175
            +  +S G+C  GGG +H  YSV  G D IVP+D+++PGCPPT  A I+G      LLQ+
Sbjct: 102 HKICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHGFAVALGLLQQ 161

Query: 176 KI 177
           KI
Sbjct: 162 KI 163


>gi|332755132|gb|EGJ85497.1| hydrogenase-4 component I [Shigella flexneri 4343-70]
          Length = 231

 Score =  157 bits (396), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 51/122 (41%), Positives = 72/122 (59%), Gaps = 4/122 (3%)

Query: 60  FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119
            G   C +E+  A  P +D ERFG    +SPR +D+++  GT+T  M     R Y+  P+
Sbjct: 21  GGCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGTVTRAMRMPALRAYESAPD 80

Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQK 175
            +  +S G+C  GGG +H  YSV  G D IVP+D+++PGCPPT  A I+G      LLQ+
Sbjct: 81  HKICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHGFAVALGLLQQ 140

Query: 176 KI 177
           KI
Sbjct: 141 KI 142


>gi|150401363|ref|YP_001325129.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanococcus
           aeolicus Nankai-3]
 gi|150014066|gb|ABR56517.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanococcus
           aeolicus Nankai-3]
          Length = 246

 Score =  157 bits (396), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 46/116 (39%), Positives = 68/116 (58%)

Query: 60  FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119
            G   C  ++   + P YDL RFG    ASPR +D +++ G +T  M  AL + YD  P 
Sbjct: 131 GGCNACDADINVLNTPVYDLSRFGIKFVASPRHADGLVITGPVTKNMELALMKTYDATPS 190

Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175
           P++VI++G+CA  GG +  +  VV G D+I+PVD+Y+PGCPP     +Y  +   K
Sbjct: 191 PKFVIAVGTCAISGGIFRENEEVVGGVDKILPVDLYIPGCPPHPFTNLYAFVKFFK 246


>gi|315615732|gb|EFU96364.1| hydrogenase-4 component I [Escherichia coli 3431]
          Length = 249

 Score =  157 bits (396), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 50/122 (40%), Positives = 71/122 (58%), Gaps = 4/122 (3%)

Query: 60  FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119
            G   C +E+  A  P +D ERFG    +SPR +D+++  G +T  M     R Y+  P+
Sbjct: 39  GGCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMRMPALRAYESAPD 98

Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQK 175
            +  +S G+C  GGG +H  YSV  G D IVP+D+++PGCPPT  A I+G      LLQ+
Sbjct: 99  HKICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHGFAVALGLLQQ 158

Query: 176 KI 177
           KI
Sbjct: 159 KI 160


>gi|238784034|ref|ZP_04628049.1| Formate hydrogenlyase subunit 7 [Yersinia bercovieri ATCC 43970]
 gi|238715011|gb|EEQ07008.1| Formate hydrogenlyase subunit 7 [Yersinia bercovieri ATCC 43970]
          Length = 237

 Score =  157 bits (396), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 53/138 (38%), Positives = 77/138 (55%), Gaps = 5/138 (3%)

Query: 46  LVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTN 104
           L    R+  +  +  G    C +E+  +  P +D ERFG    ASPR +D+++  G +T 
Sbjct: 2   LKDIKRSAYVYRVDCGGCNGCEIEIFSSITPLFDTERFGIKVVASPRHADILLFTGAVTR 61

Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164
            M S   R Y   P+P+  IS G+C  GGG +H  Y V  G D IVP+D+Y+PGCPPT  
Sbjct: 62  AMRSPALRAYQSAPDPKICISYGACGCGGGIFHDLYCVWGGSDTIVPIDVYIPGCPPTPA 121

Query: 165 ALIYGIL----LLQKKIR 178
           A +YG      LL++K++
Sbjct: 122 ATLYGFAVALGLLEQKLK 139


>gi|218705988|ref|YP_002413507.1| hydrogenase 4, Fe-S subunit [Escherichia coli UMN026]
 gi|293405925|ref|ZP_06649917.1| hydrogenase-4 component I [Escherichia coli FVEC1412]
 gi|298381673|ref|ZP_06991272.1| hydrogenase-4 component I [Escherichia coli FVEC1302]
 gi|300897630|ref|ZP_07116035.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 198-1]
 gi|218433085|emb|CAR13980.1| hydrogenase 4, Fe-S subunit [Escherichia coli UMN026]
 gi|291428133|gb|EFF01160.1| hydrogenase-4 component I [Escherichia coli FVEC1412]
 gi|298279115|gb|EFI20629.1| hydrogenase-4 component I [Escherichia coli FVEC1302]
 gi|300358630|gb|EFJ74500.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 198-1]
          Length = 252

 Score =  157 bits (396), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 50/122 (40%), Positives = 71/122 (58%), Gaps = 4/122 (3%)

Query: 60  FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119
            G   C +E+  A  P +D ERFG    +SPR +D+++  G +T  M     R Y+  P+
Sbjct: 42  GGCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMRMPALRAYESAPD 101

Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQK 175
            +  +S G+C  GGG +H  YSV  G D IVP+D+++PGCPPT  A I+G      LLQ+
Sbjct: 102 HKICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHGFAVALGLLQQ 161

Query: 176 KI 177
           KI
Sbjct: 162 KI 163


>gi|15832605|ref|NP_311378.1| hydrogenase 4 Fe-S subunit [Escherichia coli O157:H7 str. Sakai]
 gi|168748455|ref|ZP_02773477.1| hydrogenase-4, I subunit [Escherichia coli O157:H7 str. EC4113]
 gi|168756258|ref|ZP_02781265.1| hydrogenase-4, I subunit [Escherichia coli O157:H7 str. EC4401]
 gi|168761095|ref|ZP_02786102.1| hydrogenase-4, I subunit [Escherichia coli O157:H7 str. EC4501]
 gi|168768578|ref|ZP_02793585.1| hydrogenase-4, I subunit [Escherichia coli O157:H7 str. EC4486]
 gi|168773600|ref|ZP_02798607.1| hydrogenase-4, I subunit [Escherichia coli O157:H7 str. EC4196]
 gi|168778452|ref|ZP_02803459.1| hydrogenase-4, I subunit [Escherichia coli O157:H7 str. EC4076]
 gi|168787832|ref|ZP_02812839.1| hydrogenase-4, I subunit [Escherichia coli O157:H7 str. EC869]
 gi|168798857|ref|ZP_02823864.1| hydrogenase-4, I subunit [Escherichia coli O157:H7 str. EC508]
 gi|195936632|ref|ZP_03082014.1| hydrogenase 4 Fe-S subunit [Escherichia coli O157:H7 str. EC4024]
 gi|208809412|ref|ZP_03251749.1| hydrogenase-4, I subunit [Escherichia coli O157:H7 str. EC4206]
 gi|208811962|ref|ZP_03253291.1| hydrogenase-4, I subunit [Escherichia coli O157:H7 str. EC4045]
 gi|208821226|ref|ZP_03261546.1| hydrogenase-4, I subunit [Escherichia coli O157:H7 str. EC4042]
 gi|209398464|ref|YP_002271958.1| hydrogenase-4, I subunit [Escherichia coli O157:H7 str. EC4115]
 gi|217327671|ref|ZP_03443754.1| hydrogenase-4, I subunit [Escherichia coli O157:H7 str. TW14588]
 gi|254794434|ref|YP_003079271.1| hydrogenase 4, Fe-S subunit [Escherichia coli O157:H7 str. TW14359]
 gi|261223078|ref|ZP_05937359.1| hydrogenase 4, Fe-S subunit [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261259370|ref|ZP_05951903.1| hydrogenase 4, Fe-S subunit [Escherichia coli O157:H7 str. FRIK966]
 gi|13362821|dbj|BAB36774.1| hydrogenase 4 Fe-S subunit [Escherichia coli O157:H7 str. Sakai]
 gi|187770648|gb|EDU34492.1| hydrogenase-4, I subunit [Escherichia coli O157:H7 str. EC4196]
 gi|188017086|gb|EDU55208.1| hydrogenase-4, I subunit [Escherichia coli O157:H7 str. EC4113]
 gi|189003438|gb|EDU72424.1| hydrogenase-4, I subunit [Escherichia coli O157:H7 str. EC4076]
 gi|189356622|gb|EDU75041.1| hydrogenase-4, I subunit [Escherichia coli O157:H7 str. EC4401]
 gi|189362304|gb|EDU80723.1| hydrogenase-4, I subunit [Escherichia coli O157:H7 str. EC4486]
 gi|189368448|gb|EDU86864.1| hydrogenase-4, I subunit [Escherichia coli O157:H7 str. EC4501]
 gi|189372275|gb|EDU90691.1| hydrogenase-4, I subunit [Escherichia coli O157:H7 str. EC869]
 gi|189378584|gb|EDU97000.1| hydrogenase-4, I subunit [Escherichia coli O157:H7 str. EC508]
 gi|208729213|gb|EDZ78814.1| hydrogenase-4, I subunit [Escherichia coli O157:H7 str. EC4206]
 gi|208733239|gb|EDZ81926.1| hydrogenase-4, I subunit [Escherichia coli O157:H7 str. EC4045]
 gi|208741349|gb|EDZ89031.1| hydrogenase-4, I subunit [Escherichia coli O157:H7 str. EC4042]
 gi|209159864|gb|ACI37297.1| hydrogenase-4, I subunit [Escherichia coli O157:H7 str. EC4115]
 gi|209763620|gb|ACI80122.1| hydrogenase 4 Fe-S subunit [Escherichia coli]
 gi|209763622|gb|ACI80123.1| hydrogenase 4 Fe-S subunit [Escherichia coli]
 gi|209763626|gb|ACI80125.1| hydrogenase 4 Fe-S subunit [Escherichia coli]
 gi|217320038|gb|EEC28463.1| hydrogenase-4, I subunit [Escherichia coli O157:H7 str. TW14588]
 gi|254593834|gb|ACT73195.1| hydrogenase 4, Fe-S subunit [Escherichia coli O157:H7 str. TW14359]
 gi|320188821|gb|EFW63480.1| Hydrogenase-4 component I [Escherichia coli O157:H7 str. EC1212]
 gi|320640993|gb|EFX10477.1| hydrogenase 4, Fe-S subunit [Escherichia coli O157:H7 str. G5101]
 gi|326340284|gb|EGD64088.1| Hydrogenase-4 component I [Escherichia coli O157:H7 str. 1125]
 gi|326344969|gb|EGD68713.1| Hydrogenase-4 component I [Escherichia coli O157:H7 str. 1044]
          Length = 252

 Score =  157 bits (396), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 50/122 (40%), Positives = 71/122 (58%), Gaps = 4/122 (3%)

Query: 60  FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119
            G   C +E+  A  P +D ERFG    +SPR +D+++  G +T  M     R Y+  P+
Sbjct: 42  GGCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMRMPALRAYESAPD 101

Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQK 175
            +  +S G+C  GGG +H  YSV  G D IVP+D+++PGCPPT  A I+G      LLQ+
Sbjct: 102 HKICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHGFAVALGLLQQ 161

Query: 176 KI 177
           KI
Sbjct: 162 KI 163


>gi|15803012|ref|NP_289042.1| hydrogenase 4 Fe-S subunit [Escherichia coli O157:H7 EDL933]
 gi|12516874|gb|AAG57599.1|AE005478_9 hydrogenase 4 Fe-S subunit [Escherichia coli O157:H7 str. EDL933]
          Length = 252

 Score =  157 bits (396), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 50/122 (40%), Positives = 71/122 (58%), Gaps = 4/122 (3%)

Query: 60  FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119
            G   C +E+  A  P +D ERFG    +SPR +D+++  G +T  M     R Y+  P+
Sbjct: 42  GGCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMRMPALRAYESAPD 101

Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQK 175
            +  +S G+C  GGG +H  YSV  G D IVP+D+++PGCPPT  A I+G      LLQ+
Sbjct: 102 HKICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHGFAVALGLLQQ 161

Query: 176 KI 177
           KI
Sbjct: 162 KI 163


>gi|313650947|gb|EFS15347.1| hydrogenase-4 component I [Shigella flexneri 2a str. 2457T]
 gi|332766297|gb|EGJ96507.1| hydrogenase 3 and formate hydrogenlyase complex, HycG subunit
           [Shigella flexneri 2930-71]
          Length = 249

 Score =  157 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 50/122 (40%), Positives = 71/122 (58%), Gaps = 4/122 (3%)

Query: 60  FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119
            G   C +E+  A  P +D ERFG    +SPR +D+++  G +T  M     R Y+  P+
Sbjct: 39  GGCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMRMPALRAYESAPD 98

Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQK 175
            +  +S G+C  GGG +H  YSV  G D IVP+D+++PGCPPT  A I+G      LLQ+
Sbjct: 99  HKICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHGFAVALGLLQQ 158

Query: 176 KI 177
           KI
Sbjct: 159 KI 160


>gi|323967933|gb|EGB63345.1| NADH ubiquinone oxidoreductase [Escherichia coli M863]
          Length = 252

 Score =  157 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 50/122 (40%), Positives = 71/122 (58%), Gaps = 4/122 (3%)

Query: 60  FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119
            G   C +E+  A  P +D ERFG    +SPR +D+++  G +T  M     R Y+  P+
Sbjct: 42  GGCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMRMPALRAYESAPD 101

Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQK 175
            +  +S G+C  GGG +H  YSV  G D IVP+D+++PGCPPT  A I+G      LLQ+
Sbjct: 102 HKICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHGFAVALGLLQQ 161

Query: 176 KI 177
           KI
Sbjct: 162 KI 163


>gi|301024711|ref|ZP_07188354.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 69-1]
 gi|331664046|ref|ZP_08364956.1| hydrogenase-4 component I [Escherichia coli TA143]
 gi|331673944|ref|ZP_08374707.1| hydrogenase-4 component I [Escherichia coli TA280]
 gi|300396442|gb|EFJ79980.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 69-1]
 gi|331059845|gb|EGI31822.1| hydrogenase-4 component I [Escherichia coli TA143]
 gi|331069217|gb|EGI40609.1| hydrogenase-4 component I [Escherichia coli TA280]
          Length = 252

 Score =  157 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 50/122 (40%), Positives = 71/122 (58%), Gaps = 4/122 (3%)

Query: 60  FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119
            G   C +E+  A  P +D ERFG    +SPR +D+++  G +T  M     R Y+  P+
Sbjct: 42  GGCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMRMPALRAYESAPD 101

Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQK 175
            +  +S G+C  GGG +H  YSV  G D IVP+D+++PGCPPT  A I+G      LLQ+
Sbjct: 102 HKICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHGFAVALGLLQQ 161

Query: 176 KI 177
           KI
Sbjct: 162 KI 163


>gi|191169211|ref|ZP_03030966.1| hydrogenase-4, I subunit [Escherichia coli B7A]
 gi|190900756|gb|EDV60550.1| hydrogenase-4, I subunit [Escherichia coli B7A]
          Length = 252

 Score =  157 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 50/122 (40%), Positives = 71/122 (58%), Gaps = 4/122 (3%)

Query: 60  FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119
            G   C +E+  A  P +D ERFG    +SPR +D+++  G +T  M     R Y+  P+
Sbjct: 42  GGCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMRMPALRAYESAPD 101

Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQK 175
            +  +S G+C  GGG +H  YSV  G D IVP+D+++PGCPPT  A I+G      LLQ+
Sbjct: 102 HKICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHGFAVALGLLQQ 161

Query: 176 KI 177
           KI
Sbjct: 162 KI 163


>gi|209763618|gb|ACI80121.1| hydrogenase 4 Fe-S subunit [Escherichia coli]
 gi|320646275|gb|EFX15202.1| hydrogenase 4, Fe-S subunit [Escherichia coli O157:H- str. 493-89]
 gi|320651780|gb|EFX20160.1| hydrogenase 4, Fe-S subunit [Escherichia coli O157:H- str. H 2687]
 gi|320657166|gb|EFX24975.1| hydrogenase 4, Fe-S subunit [Escherichia coli O55:H7 str. 3256-97
           TW 07815]
 gi|320667576|gb|EFX34491.1| hydrogenase 4, Fe-S subunit [Escherichia coli O157:H7 str. LSU-61]
          Length = 252

 Score =  157 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 50/122 (40%), Positives = 71/122 (58%), Gaps = 4/122 (3%)

Query: 60  FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119
            G   C +E+  A  P +D ERFG    +SPR +D+++  G +T  M     R Y+  P+
Sbjct: 42  GGCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMRMPALRAYESAPD 101

Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQK 175
            +  +S G+C  GGG +H  YSV  G D IVP+D+++PGCPPT  A I+G      LLQ+
Sbjct: 102 HKICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHGFAVALGLLQQ 161

Query: 176 KI 177
           KI
Sbjct: 162 KI 163


>gi|209919965|ref|YP_002294049.1| hydrogenase 4 Fe-S subunit [Escherichia coli SE11]
 gi|218555015|ref|YP_002387928.1| hydrogenase 4, Fe-S subunit [Escherichia coli IAI1]
 gi|218696116|ref|YP_002403783.1| hydrogenase 4, Fe-S subunit [Escherichia coli 55989]
 gi|309794467|ref|ZP_07688890.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 145-7]
 gi|209913224|dbj|BAG78298.1| hydrogenase 4 Fe-S subunit [Escherichia coli SE11]
 gi|218352848|emb|CAU98647.1| hydrogenase 4, Fe-S subunit [Escherichia coli 55989]
 gi|218361783|emb|CAQ99380.1| hydrogenase 4, Fe-S subunit [Escherichia coli IAI1]
 gi|308121923|gb|EFO59185.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 145-7]
 gi|320200049|gb|EFW74638.1| Hydrogenase-4 component I [Escherichia coli EC4100B]
 gi|324020088|gb|EGB89307.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 117-3]
 gi|324118167|gb|EGC12064.1| NADH ubiquinone oxidoreductase [Escherichia coli E1167]
          Length = 252

 Score =  157 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 50/122 (40%), Positives = 71/122 (58%), Gaps = 4/122 (3%)

Query: 60  FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119
            G   C +E+  A  P +D ERFG    +SPR +D+++  G +T  M     R Y+  P+
Sbjct: 42  GGCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMRMPALRAYESAPD 101

Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQK 175
            +  +S G+C  GGG +H  YSV  G D IVP+D+++PGCPPT  A I+G      LLQ+
Sbjct: 102 HKICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHGFAVALGLLQQ 161

Query: 176 KI 177
           KI
Sbjct: 162 KI 163


>gi|170682690|ref|YP_001744672.1| hydrogenase-4, I subunit [Escherichia coli SMS-3-5]
 gi|218700947|ref|YP_002408576.1| hydrogenase 4, Fe-S subunit [Escherichia coli IAI39]
 gi|170520408|gb|ACB18586.1| hydrogenase-4, I subunit [Escherichia coli SMS-3-5]
 gi|218370933|emb|CAR18752.1| hydrogenase 4, Fe-S subunit [Escherichia coli IAI39]
          Length = 252

 Score =  157 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 50/122 (40%), Positives = 71/122 (58%), Gaps = 4/122 (3%)

Query: 60  FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119
            G   C +E+  A  P +D ERFG    +SPR +D+++  G +T  M     R Y+  P+
Sbjct: 42  GGCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMRMPALRAYESAPD 101

Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQK 175
            +  +S G+C  GGG +H  YSV  G D IVP+D+++PGCPPT  A I+G      LLQ+
Sbjct: 102 HKICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHGFAVALGLLQQ 161

Query: 176 KI 177
           KI
Sbjct: 162 KI 163


>gi|323936381|gb|EGB32671.1| NADH ubiquinone oxidoreductase [Escherichia coli E1520]
          Length = 252

 Score =  157 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 50/122 (40%), Positives = 71/122 (58%), Gaps = 4/122 (3%)

Query: 60  FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119
            G   C +E+  A  P +D ERFG    +SPR +D+++  G +T  M     R Y+  P+
Sbjct: 42  GGCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMRMPALRAYESAPD 101

Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQK 175
            +  +S G+C  GGG +H  YSV  G D IVP+D+++PGCPPT  A I+G      LLQ+
Sbjct: 102 HKICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHGFAVALGLLQQ 161

Query: 176 KI 177
           KI
Sbjct: 162 KI 163


>gi|291283709|ref|YP_003500527.1| Hydrogenase-4, I subunit [Escherichia coli O55:H7 str. CB9615]
 gi|209763624|gb|ACI80124.1| hydrogenase 4 Fe-S subunit [Escherichia coli]
 gi|290763582|gb|ADD57543.1| Hydrogenase-4, I subunit [Escherichia coli O55:H7 str. CB9615]
 gi|320662772|gb|EFX30104.1| hydrogenase 4, Fe-S subunit [Escherichia coli O55:H7 str. USDA
           5905]
          Length = 252

 Score =  157 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 50/122 (40%), Positives = 71/122 (58%), Gaps = 4/122 (3%)

Query: 60  FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119
            G   C +E+  A  P +D ERFG    +SPR +D+++  G +T  M     R Y+  P+
Sbjct: 42  GGCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMRMPALRAYESAPD 101

Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQK 175
            +  +S G+C  GGG +H  YSV  G D IVP+D+++PGCPPT  A I+G      LLQ+
Sbjct: 102 HKICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHGFAVALGLLQQ 161

Query: 176 KI 177
           KI
Sbjct: 162 KI 163


>gi|14521670|ref|NP_127146.1| hydrogenase-4 component i [Pyrococcus abyssi GE5]
 gi|5458889|emb|CAB50376.1| Hydrogenase 4, component I or formate hydrogen lyase, subunit 7
           [Pyrococcus abyssi GE5]
          Length = 271

 Score =  157 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 48/147 (32%), Positives = 80/147 (54%), Gaps = 18/147 (12%)

Query: 53  GSLMWMT---FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASA 109
            SL            C +E++    P YDLER G     +PR +D +++ G LT +   A
Sbjct: 5   KSLWVYHVDAGSCNGCDIEVLDVLTPYYDLERLGIKVVPNPRHADALLITGPLTRQTRMA 64

Query: 110 LRRVYDQM-PEPRYVISMGSCANGGGYYHYSYSVV-------------RGCDRIVPVDIY 155
           +++ Y+ M P+PR V+++G+CA  GG ++ SY++               G + +VPVD+Y
Sbjct: 65  IKKAYEAMPPKPRIVVAIGTCACSGGIFYNSYALYNTSPERGRDRLRSGGIEMVVPVDMY 124

Query: 156 VPGCPPTAEALIYGILLLQK-KIRRVG 181
           +PGCPP+ E ++YG+  L   K +R+ 
Sbjct: 125 IPGCPPSPEEILYGLAQLLGIKEKRMK 151


>gi|88603006|ref|YP_503184.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Methanospirillum
           hungatei JF-1]
 gi|88188468|gb|ABD41465.1| ech hydrogenase subunit C [Methanospirillum hungatei JF-1]
          Length = 148

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 38/133 (28%), Positives = 70/133 (52%), Gaps = 3/133 (2%)

Query: 53  GSLMWMTF---GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASA 109
            S   + +       C +E++    P YD+ERFG     +P+ +D+ ++ G +       
Sbjct: 6   KSPWIIHYDASSCNGCDIEVLACLTPLYDVERFGILNTGNPKHADIFVITGGVNEINKEV 65

Query: 110 LRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYG 169
           +  +Y+QMP P+ V+++G CA  GG +   Y++  G   ++PVD+YVPGC    E++I G
Sbjct: 66  VLNIYEQMPHPKVVVAVGICACSGGVFRECYNISGGVATVIPVDVYVPGCAARPESIIDG 125

Query: 170 ILLLQKKIRRVGN 182
           I+     + +  +
Sbjct: 126 IVQALGILEQKRS 138


>gi|293410884|ref|ZP_06654460.1| hydrogenase 4 [Escherichia coli B354]
 gi|284922436|emb|CBG35523.1| hydrogenase-4 component I [Escherichia coli 042]
 gi|291471352|gb|EFF13836.1| hydrogenase 4 [Escherichia coli B354]
          Length = 252

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 50/122 (40%), Positives = 71/122 (58%), Gaps = 4/122 (3%)

Query: 60  FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119
            G   C +E+  A  P +D ERFG    +SPR +D+++  G +T  M     R Y+  P+
Sbjct: 42  GGCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMRMPALRAYESAPD 101

Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQK 175
            +  +S G+C  GGG +H  YSV  G D IVP+D+++PGCPPT  A I+G      LLQ+
Sbjct: 102 HKICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHGFAVALGLLQQ 161

Query: 176 KI 177
           KI
Sbjct: 162 KI 163


>gi|157158565|ref|YP_001463811.1| hydrogenase-4, I subunit [Escherichia coli E24377A]
 gi|300922195|ref|ZP_07138331.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 182-1]
 gi|301329011|ref|ZP_07222038.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 78-1]
 gi|157080595|gb|ABV20303.1| hydrogenase-4, I subunit [Escherichia coli E24377A]
 gi|300421434|gb|EFK04745.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 182-1]
 gi|300844645|gb|EFK72405.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 78-1]
          Length = 252

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 50/122 (40%), Positives = 71/122 (58%), Gaps = 4/122 (3%)

Query: 60  FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119
            G   C +E+  A  P +D ERFG    +SPR +D+++  G +T  M     R Y+  P+
Sbjct: 42  GGCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMRMPALRAYESAPD 101

Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQK 175
            +  +S G+C  GGG +H  YSV  G D IVP+D+++PGCPPT  A I+G      LLQ+
Sbjct: 102 HKICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHGFAVALGLLQQ 161

Query: 176 KI 177
           KI
Sbjct: 162 KI 163


>gi|16130414|ref|NP_416984.1| hydrogenase 4, Fe-S subunit [Escherichia coli str. K-12 substr.
           MG1655]
 gi|82544938|ref|YP_408885.1| hydrogenase 4 Fe-S subunit [Shigella boydii Sb227]
 gi|89109295|ref|AP_003075.1| hydrogenase 4, Fe-S subunit [Escherichia coli str. K-12 substr.
           W3110]
 gi|170082099|ref|YP_001731419.1| hydrogenase 4, Fe-S subunit [Escherichia coli str. K-12 substr.
           DH10B]
 gi|193068356|ref|ZP_03049319.1| hydrogenase-4, I subunit [Escherichia coli E110019]
 gi|238901654|ref|YP_002927450.1| hydrogenase 4, Fe-S subunit [Escherichia coli BW2952]
 gi|300958884|ref|ZP_07170990.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 175-1]
 gi|301023874|ref|ZP_07187605.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 196-1]
 gi|301644479|ref|ZP_07244476.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 146-1]
 gi|307139123|ref|ZP_07498479.1| hydrogenase 4, Fe-S subunit [Escherichia coli H736]
 gi|331643106|ref|ZP_08344241.1| hydrogenase-4 component I [Escherichia coli H736]
 gi|331653914|ref|ZP_08354915.1| hydrogenase-4 component I [Escherichia coli M718]
 gi|2499332|sp|P77668|HYFI_ECOLI RecName: Full=Hydrogenase-4 component I
 gi|1788834|gb|AAC75542.1| hydrogenase 4, Fe-S subunit [Escherichia coli str. K-12 substr.
           MG1655]
 gi|2668498|gb|AAB88571.1| HyfI [Escherichia coli]
 gi|81246349|gb|ABB67057.1| hydrogenase 4 Fe-S subunit [Shigella boydii Sb227]
 gi|85675423|dbj|BAA16377.2| hydrogenase 4, Fe-S subunit [Escherichia coli str. K12 substr.
           W3110]
 gi|169889934|gb|ACB03641.1| hydrogenase 4, Fe-S subunit [Escherichia coli str. K-12 substr.
           DH10B]
 gi|192958308|gb|EDV88748.1| hydrogenase-4, I subunit [Escherichia coli E110019]
 gi|238861461|gb|ACR63459.1| hydrogenase 4, Fe-S subunit [Escherichia coli BW2952]
 gi|260448432|gb|ACX38854.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Escherichia coli
           DH1]
 gi|299880628|gb|EFI88839.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 196-1]
 gi|300314486|gb|EFJ64270.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 175-1]
 gi|301077224|gb|EFK92030.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 146-1]
 gi|315137112|dbj|BAJ44271.1| hydrogenase 4, Fe-S subunit [Escherichia coli DH1]
 gi|320185186|gb|EFW59966.1| Hydrogenase-4 component I [Shigella flexneri CDC 796-83]
 gi|323941252|gb|EGB37437.1| NADH ubiquinone oxidoreductase [Escherichia coli E482]
 gi|331039904|gb|EGI12124.1| hydrogenase-4 component I [Escherichia coli H736]
 gi|331048763|gb|EGI20839.1| hydrogenase-4 component I [Escherichia coli M718]
 gi|332344309|gb|AEE57643.1| hydrogenase-4, subunit I [Escherichia coli UMNK88]
          Length = 252

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 50/122 (40%), Positives = 71/122 (58%), Gaps = 4/122 (3%)

Query: 60  FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119
            G   C +E+  A  P +D ERFG    +SPR +D+++  G +T  M     R Y+  P+
Sbjct: 42  GGCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMRMPALRAYESAPD 101

Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQK 175
            +  +S G+C  GGG +H  YSV  G D IVP+D+++PGCPPT  A I+G      LLQ+
Sbjct: 102 HKICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHGFAVALGLLQQ 161

Query: 176 KI 177
           KI
Sbjct: 162 KI 163


>gi|293415752|ref|ZP_06658395.1| hydrogenase-4 component I [Escherichia coli B185]
 gi|291433400|gb|EFF06379.1| hydrogenase-4 component I [Escherichia coli B185]
          Length = 252

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 50/122 (40%), Positives = 71/122 (58%), Gaps = 4/122 (3%)

Query: 60  FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119
            G   C +E+  A  P +D ERFG    +SPR +D+++  G +T  M     R Y+  P+
Sbjct: 42  GGCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMRMPALRAYESAPD 101

Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQK 175
            +  +S G+C  GGG +H  YSV  G D IVP+D+++PGCPPT  A I+G      LLQ+
Sbjct: 102 HKICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHGFAVALGLLQQ 161

Query: 176 KI 177
           KI
Sbjct: 162 KI 163


>gi|332999462|gb|EGK19047.1| formate hydrogenlyase subunit 7 [Shigella flexneri VA-6]
          Length = 255

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 53/154 (34%), Positives = 76/154 (49%), Gaps = 5/154 (3%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPR 91
              +         L    R+  +  +  G    C +E+     P +D ERFG     SPR
Sbjct: 18  TVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPR 77

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
            +D+++  G +T  M S   R +   P+P+  IS G+C N GG  H  Y V  G D+IVP
Sbjct: 78  HADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGILHDLYCVWGGTDKIVP 137

Query: 152 VDIYVPGCPPTAEALIYGILL----LQKKIRRVG 181
           VD+Y+PGCPPT  A +YG  +    L++KI   G
Sbjct: 138 VDVYIPGCPPTPAATLYGFAMALGLLEQKIHARG 171


>gi|256021825|ref|ZP_05435690.1| hydrogenase 4, Fe-S subunit [Escherichia sp. 4_1_40B]
          Length = 252

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 50/122 (40%), Positives = 71/122 (58%), Gaps = 4/122 (3%)

Query: 60  FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119
            G   C +E+  A  P +D ERFG    +SPR +D+++  G +T  M     R Y+  P+
Sbjct: 42  GGCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMRMPALRAYESAPD 101

Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQK 175
            +  +S G+C  GGG +H  YSV  G D IVP+D+++PGCPPT  A I+G      LLQ+
Sbjct: 102 HKICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHGFAVALGLLQQ 161

Query: 176 KI 177
           KI
Sbjct: 162 KI 163


>gi|187732837|ref|YP_001881279.1| hydrogenase-4, I subunit [Shigella boydii CDC 3083-94]
 gi|187429829|gb|ACD09103.1| hydrogenase-4, I subunit [Shigella boydii CDC 3083-94]
          Length = 252

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 50/122 (40%), Positives = 71/122 (58%), Gaps = 4/122 (3%)

Query: 60  FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119
            G   C +E+  A  P +D ERFG    +SPR +D+++  G +T  M     R Y+  P+
Sbjct: 42  GGCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMRMPALRAYESAPD 101

Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQK 175
            +  +S G+C  GGG +H  YSV  G D IVP+D+++PGCPPT  A I+G      LLQ+
Sbjct: 102 HKICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHGFAVALGLLQQ 161

Query: 176 KI 177
           KI
Sbjct: 162 KI 163


>gi|295105899|emb|CBL03442.1| ech hydrogenase subunit C [Gordonibacter pamelaeae 7-10-1-b]
          Length = 147

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 45/140 (32%), Positives = 78/140 (55%), Gaps = 7/140 (5%)

Query: 52  TGSLMWMTF---GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108
           T S   + +       C +E++ A  P YD+ERFG     +P+ +D+ +V G++  +   
Sbjct: 5   TKSPWVIHYDGSSCNGCDIEVLAALCPGYDVERFGIINTGNPKHADIFLVTGSVNEQNIK 64

Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168
            ++ +Y+QM EP+ VI+ G CA   G +H  Y+V+ G D+ +PVD+Y PGC    EA+I 
Sbjct: 65  VVQEIYNQMVEPKVVIACGICACSAGIFHDCYNVIGGVDQAIPVDVYAPGCAVRPEAIID 124

Query: 169 GILL----LQKKIRRVGNVK 184
            ++     L++K + +   K
Sbjct: 125 AVVQGLGILEEKSKALQAQK 144


>gi|88603078|ref|YP_503256.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Methanospirillum
           hungatei JF-1]
 gi|88188540|gb|ABD41537.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Methanospirillum
           hungatei JF-1]
          Length = 170

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 52/163 (31%), Positives = 87/163 (53%), Gaps = 4/163 (2%)

Query: 21  KVDADFSRISSE--ITHKGFLVTSVDQLVTWARTGSLMWMTFGL-ACCAVEMMQASMPRY 77
           K   D    + +      G ++ +    V +  + ++  +  G      +E+   S P Y
Sbjct: 9   KKPKDLQAYTPDSAFESAGVMLKAEIDRV-FGHSIAIREVDCGSDNAAEIELANLSAPHY 67

Query: 78  DLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137
           D+ERFG    ASPR +D++ V G +T+ M  AL + Y+  PEP++VI++G  A  GG Y 
Sbjct: 68  DVERFGITFVASPRHADILAVTGVVTHGMKEALIKTYEATPEPKFVIAVGDDACTGGMYI 127

Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
            +Y+VV   D ++PVD+ +PG PPT  A++ G+L L    ++ 
Sbjct: 128 GTYAVVGPVDAVIPVDLKIPGNPPTPAAILEGLLTLMNVAKKR 170


>gi|24113818|ref|NP_708328.1| hydrogenase 4 Fe-S subunit [Shigella flexneri 2a str. 301]
 gi|30063865|ref|NP_838036.1| hydrogenase 4 Fe-S subunit [Shigella flexneri 2a str. 2457T]
 gi|110806420|ref|YP_689940.1| hydrogenase 4 Fe-S subunit [Shigella flexneri 5 str. 8401]
 gi|24052905|gb|AAN44035.1| hydrogenase 4 Fe-S subunit [Shigella flexneri 2a str. 301]
 gi|30042120|gb|AAP17846.1| hydrogenase 4 Fe-S subunit [Shigella flexneri 2a str. 2457T]
 gi|110615968|gb|ABF04635.1| hydrogenase 4 Fe-S subunit [Shigella flexneri 5 str. 8401]
 gi|281601892|gb|ADA74876.1| Hydrogenase 4 Fe-S subunit [Shigella flexneri 2002017]
 gi|332755532|gb|EGJ85896.1| hydrogenase-4 component I [Shigella flexneri K-671]
 gi|332756429|gb|EGJ86780.1| hydrogenase-4 component I [Shigella flexneri 2747-71]
 gi|333001624|gb|EGK21192.1| hydrogenase-4 component I [Shigella flexneri VA-6]
 gi|333002278|gb|EGK21842.1| hydrogenase-4 component I [Shigella flexneri K-272]
 gi|333016099|gb|EGK35431.1| hydrogenase-4 component I [Shigella flexneri K-227]
 gi|333016345|gb|EGK35676.1| hydrogenase-4 component I [Shigella flexneri K-304]
          Length = 252

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 50/122 (40%), Positives = 71/122 (58%), Gaps = 4/122 (3%)

Query: 60  FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119
            G   C +E+  A  P +D ERFG    +SPR +D+++  G +T  M     R Y+  P+
Sbjct: 42  GGCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMRMPALRAYESAPD 101

Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQK 175
            +  +S G+C  GGG +H  YSV  G D IVP+D+++PGCPPT  A I+G      LLQ+
Sbjct: 102 HKICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHGFAVALGLLQQ 161

Query: 176 KI 177
           KI
Sbjct: 162 KI 163


>gi|323169072|gb|EFZ54749.1| hydrogenase-4 component I [Shigella sonnei 53G]
          Length = 249

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 50/122 (40%), Positives = 71/122 (58%), Gaps = 4/122 (3%)

Query: 60  FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119
            G   C +E+  A  P +D ERFG    +SPR +D+++  G +T  M     R Y+  P+
Sbjct: 39  GGCNACEIEIFAAITPVFDAERFGIKVISSPRHADILLFTGAVTRAMRMPALRAYESAPD 98

Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQK 175
            +  +S G+C  GGG +H  YSV  G D IVP+D+++PGCPPT  A I+G      LLQ+
Sbjct: 99  HKICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHGFAVALGLLQQ 158

Query: 176 KI 177
           KI
Sbjct: 159 KI 160


>gi|238757224|ref|ZP_04618411.1| Formate hydrogenlyase subunit 7 [Yersinia aldovae ATCC 35236]
 gi|238704602|gb|EEP97132.1| Formate hydrogenlyase subunit 7 [Yersinia aldovae ATCC 35236]
          Length = 224

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 50/123 (40%), Positives = 73/123 (59%), Gaps = 4/123 (3%)

Query: 60  FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119
            G   C +E+  +  P +D ERFG    ASPR +D+++  G +T  M +   R Y+  P+
Sbjct: 4   GGCNGCEIEIFSSITPVFDTERFGIKVVASPRHADILLFTGAVTRAMRTPALRAYESAPD 63

Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQK 175
           P+  +S G+C  GGG +H  Y V  G D IVP+D+Y+PGCPPT  A IYG      LL++
Sbjct: 64  PKICVSYGACGCGGGIFHDLYCVWGGSDTIVPIDVYIPGCPPTPAATIYGFAVALGLLEQ 123

Query: 176 KIR 178
           K++
Sbjct: 124 KLK 126


>gi|319790466|ref|YP_004152099.1| NADH-quinone oxidoreductase, B subunit [Thermovibrio ammonificans
           HB-1]
 gi|317114968|gb|ADU97458.1| NADH-quinone oxidoreductase, B subunit [Thermovibrio ammonificans
           HB-1]
          Length = 156

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 59/135 (43%), Positives = 81/135 (60%)

Query: 45  QLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTN 104
           +   W+R  S   + F   CC++E++    PR+D ER+GF    SPRQ+D +IV G ++ 
Sbjct: 4   KFFDWSRANSPWGVHFCSGCCSLEVLALMGPRFDWERYGFMMTPSPRQADFIIVTGLVSR 63

Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164
           K+   L RVY QMPEPRYV  MG+CA GGG Y  S  V     + +P D++V GCPP  E
Sbjct: 64  KVLPVLLRVYQQMPEPRYVFGMGACAAGGGPYWDSDFVAVDVSQYIPFDVFVAGCPPNPE 123

Query: 165 ALIYGILLLQKKIRR 179
           A + G L L++ I R
Sbjct: 124 ATLEGFLRLKEIILR 138


>gi|78223793|ref|YP_385540.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Geobacter
           metallireducens GS-15]
 gi|78195048|gb|ABB32815.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Geobacter
           metallireducens GS-15]
          Length = 244

 Score =  156 bits (394), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 49/131 (37%), Positives = 73/131 (55%), Gaps = 1/131 (0%)

Query: 49  WARTGSLMWMT-FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMA 107
           + R+     ++  G   C  +    S   +DL RFG    ASPR +D + V G +T  MA
Sbjct: 113 FGRSLKFREVSAGGCNACEADTNVLSTIGWDLGRFGIQFVASPRHADGLWVTGPVTEHMA 172

Query: 108 SALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALI 167
            AL   Y+ +P+P+ V++ G+CA  GG Y  +  V  G D IVPVD+Y+PGCPP    ++
Sbjct: 173 KALLTTYEAIPDPKIVVACGACAINGGPYIDTPQVCNGVDSIVPVDLYIPGCPPHPATIL 232

Query: 168 YGILLLQKKIR 178
            G+L +  KI+
Sbjct: 233 DGLLRILNKIK 243


>gi|269215531|ref|ZP_06159385.1| NADH dehydrogenase I, B subunit [Slackia exigua ATCC 700122]
 gi|269131018|gb|EEZ62093.1| NADH dehydrogenase I, B subunit [Slackia exigua ATCC 700122]
          Length = 147

 Score =  156 bits (394), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 41/124 (33%), Positives = 74/124 (59%), Gaps = 3/124 (2%)

Query: 52  TGSLMWMTF---GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108
           + S   + +       C +E++ +  P YD ERFG     +P+ +D+ +V G++  +   
Sbjct: 5   SKSPWVIHYDASSCNGCDIEVLASLTPLYDAERFGVINTGNPKHADIFLVTGSVNERNIK 64

Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168
            ++ +YDQM +P+ V+++G CA  GG +H  Y+V+ G D+ +PVD+YVPGC  + E +I 
Sbjct: 65  VIQEIYDQMVDPKVVVAVGICACSGGIFHDCYNVIGGVDQAIPVDVYVPGCAASPENIID 124

Query: 169 GILL 172
           G++ 
Sbjct: 125 GVVR 128


>gi|300817746|ref|ZP_07097961.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 107-1]
 gi|300529734|gb|EFK50796.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 107-1]
          Length = 252

 Score =  156 bits (394), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 50/122 (40%), Positives = 71/122 (58%), Gaps = 4/122 (3%)

Query: 60  FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119
            G   C +E+  A  P +D ERFG    +SPR +D+++  G +T  M     R Y+  P+
Sbjct: 42  GGCNACEIEIFAAITPVFDAERFGIKVISSPRHADILLFTGAVTRAMRMPALRAYESAPD 101

Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQK 175
            +  +S G+C  GGG +H  YSV  G D IVP+D+++PGCPPT  A I+G      LLQ+
Sbjct: 102 HKICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHGFAVALGLLQQ 161

Query: 176 KI 177
           KI
Sbjct: 162 KI 163


>gi|325288319|ref|YP_004264500.1| NADH dehydrogenase (quinone) [Syntrophobotulus glycolicus DSM 8271]
 gi|324963720|gb|ADY54499.1| NADH dehydrogenase (quinone) [Syntrophobotulus glycolicus DSM 8271]
          Length = 247

 Score =  156 bits (394), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 52/147 (35%), Positives = 85/147 (57%), Gaps = 10/147 (6%)

Query: 42  SVDQLVTWA-----RTG--SLMWMT---FGLACCAVEMMQASMPRYDLERFGFAPRASPR 91
           S+D L+  A     R+   S+            C  EM   + P YD++R GF   ASPR
Sbjct: 101 SLDSLLNQAAGKTLRSFQQSVHIRHLDAGSCNGCDWEMTTLTGPVYDIQRLGFDFVASPR 160

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
            +DV++V G +T  +  A+++ +   P P+ ++++G+CA  GG    SY+   G DR++P
Sbjct: 161 HADVLMVTGPVTRNLRIAVQKTFQATPAPKLIVAVGTCACSGGICGKSYASAGGVDRVLP 220

Query: 152 VDIYVPGCPPTAEALIYGILLLQKKIR 178
           VDIY+PGCPP  +ALI G++ +++K+ 
Sbjct: 221 VDIYIPGCPPRPQALIQGLMKIREKLE 247


>gi|194432188|ref|ZP_03064477.1| hydrogenase-4, I subunit [Shigella dysenteriae 1012]
 gi|194419717|gb|EDX35797.1| hydrogenase-4, I subunit [Shigella dysenteriae 1012]
 gi|320180473|gb|EFW55404.1| Hydrogenase-4 component I [Shigella boydii ATCC 9905]
 gi|332089845|gb|EGI94946.1| hydrogenase-4 component I [Shigella dysenteriae 155-74]
          Length = 252

 Score =  156 bits (394), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 50/122 (40%), Positives = 71/122 (58%), Gaps = 4/122 (3%)

Query: 60  FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119
            G   C +E+  A  P +D ERFG    +SPR +D+++  G +T  M     R Y+  P+
Sbjct: 42  GGCNACEIEIFAAITPVFDAERFGIKVISSPRHADILLFTGAVTRAMRMPALRAYESAPD 101

Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQK 175
            +  +S G+C  GGG +H  YSV  G D IVP+D+++PGCPPT  A I+G      LLQ+
Sbjct: 102 HKICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHGFAVALGLLQQ 161

Query: 176 KI 177
           KI
Sbjct: 162 KI 163


>gi|74313015|ref|YP_311434.1| hydrogenase 4 Fe-S subunit [Shigella sonnei Ss046]
 gi|157161949|ref|YP_001459267.1| hydrogenase-4, I subunit [Escherichia coli HS]
 gi|170019227|ref|YP_001724181.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Escherichia coli
           ATCC 8739]
 gi|194437593|ref|ZP_03069689.1| hydrogenase-4, I subunit [Escherichia coli 101-1]
 gi|253772619|ref|YP_003035450.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254162463|ref|YP_003045571.1| hydrogenase 4, Fe-S subunit [Escherichia coli B str. REL606]
 gi|297519669|ref|ZP_06938055.1| hydrogenase 4, Fe-S subunit [Escherichia coli OP50]
 gi|300930126|ref|ZP_07145548.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 187-1]
 gi|73856492|gb|AAZ89199.1| hydrogenase 4 Fe-S subunit [Shigella sonnei Ss046]
 gi|157067629|gb|ABV06884.1| hydrogenase-4, I subunit [Escherichia coli HS]
 gi|169754155|gb|ACA76854.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Escherichia coli
           ATCC 8739]
 gi|194423399|gb|EDX39390.1| hydrogenase-4, I subunit [Escherichia coli 101-1]
 gi|242378087|emb|CAQ32860.1| hydrogenase 4, small subunit, subunit of hydrogenase 4 [Escherichia
           coli BL21(DE3)]
 gi|253323663|gb|ACT28265.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253974364|gb|ACT40035.1| hydrogenase 4, Fe-S subunit [Escherichia coli B str. REL606]
 gi|253978531|gb|ACT44201.1| hydrogenase 4, Fe-S subunit [Escherichia coli BL21(DE3)]
 gi|300461970|gb|EFK25463.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 187-1]
 gi|323961283|gb|EGB56895.1| NADH ubiquinone oxidoreductase [Escherichia coli H489]
 gi|323970989|gb|EGB66238.1| NADH ubiquinone oxidoreductase [Escherichia coli TA007]
          Length = 252

 Score =  156 bits (394), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 50/122 (40%), Positives = 71/122 (58%), Gaps = 4/122 (3%)

Query: 60  FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119
            G   C +E+  A  P +D ERFG    +SPR +D+++  G +T  M     R Y+  P+
Sbjct: 42  GGCNACEIEIFAAITPVFDAERFGIKVISSPRHADILLFTGAVTRAMRMPALRAYESAPD 101

Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQK 175
            +  +S G+C  GGG +H  YSV  G D IVP+D+++PGCPPT  A I+G      LLQ+
Sbjct: 102 HKICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHGFAVALGLLQQ 161

Query: 176 KI 177
           KI
Sbjct: 162 KI 163


>gi|212710435|ref|ZP_03318563.1| hypothetical protein PROVALCAL_01497 [Providencia alcalifaciens DSM
           30120]
 gi|212686855|gb|EEB46383.1| hypothetical protein PROVALCAL_01497 [Providencia alcalifaciens DSM
           30120]
          Length = 260

 Score =  156 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 52/137 (37%), Positives = 76/137 (55%), Gaps = 5/137 (3%)

Query: 46  LVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTN 104
           L    R+  +  +  G    C +E+  A  P +D ERFG    ASPR +D+++  G +T 
Sbjct: 30  LKDIKRSAYVYRVDCGGCNGCEIEIFSAITPVFDAERFGIKVVASPRHADILLFTGAVTR 89

Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164
            M     R Y+  P+P+  IS G+C  GGG +H  Y V  G + IVP+D+++PGCPPT  
Sbjct: 90  AMRMPALRAYESAPDPKICISYGACGCGGGIFHDLYCVWGGSEHIVPIDVWIPGCPPTPA 149

Query: 165 ALIYGIL----LLQKKI 177
           A IYG      LL++K+
Sbjct: 150 ATIYGFAVALGLLKQKL 166


>gi|291519870|emb|CBK75091.1| ech hydrogenase subunit C [Butyrivibrio fibrisolvens 16/4]
          Length = 147

 Score =  156 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 40/123 (32%), Positives = 75/123 (60%), Gaps = 3/123 (2%)

Query: 53  GSLMWMTF---GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASA 109
            S   + +       C +E++  + P YD+ERFG     +P  +D+ ++ G + ++  + 
Sbjct: 6   KSPWLLHYDGSSCNGCDIEVLACTTPVYDVERFGVINTGNPMHADIFLITGGINSQNEAV 65

Query: 110 LRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYG 169
           ++++Y+QMP+P+ VI++G+CA  GG +   Y++  G D ++PVDIYVPGC    E++I G
Sbjct: 66  VKQIYEQMPQPKVVIAVGTCACTGGIFKECYNIKGGADTVIPVDIYVPGCAARPESIIDG 125

Query: 170 ILL 172
           ++ 
Sbjct: 126 VVK 128


>gi|90422453|ref|YP_530823.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Rhodopseudomonas
           palustris BisB18]
 gi|90104467|gb|ABD86504.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Rhodopseudomonas
           palustris BisB18]
          Length = 174

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 49/128 (38%), Positives = 74/128 (57%), Gaps = 3/128 (2%)

Query: 39  LVTSVDQLVTW--ARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDV 95
           L TS+  L      R+ S+  +  G    C +E+   S   YD+ERFG    ASPR +DV
Sbjct: 29  LATSLGDLARRRLGRSLSIREVDAGSCNGCELEIHALSNAYYDVERFGIRFVASPRHADV 88

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
           ++V G +T  M  AL+  Y+  P P++V+++G CA  GG +  SY+V  G   ++PVD++
Sbjct: 89  LLVTGPVTKNMRDALKATYEATPSPKWVVALGDCAKDGGCFAASYAVEGGVSAVIPVDLH 148

Query: 156 VPGCPPTA 163
           +PGCPP  
Sbjct: 149 IPGCPPPP 156


>gi|300940269|ref|ZP_07154866.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 21-1]
 gi|300454910|gb|EFK18403.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 21-1]
          Length = 252

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 50/122 (40%), Positives = 71/122 (58%), Gaps = 4/122 (3%)

Query: 60  FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119
            G   C +E+  A  P +D ERFG    +SPR +D+++  G +T  M     R Y+  P+
Sbjct: 42  GGCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMRMPALRAYESAPD 101

Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQK 175
            +  +S G+C  GGG +H  YSV  G D IVP+D+++PGCPPT  A I+G      LLQ+
Sbjct: 102 HKICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPVATIHGFAVALGLLQQ 161

Query: 176 KI 177
           KI
Sbjct: 162 KI 163


>gi|14325377|dbj|BAB60281.1| NADH dehydrogenase I chain B [Thermoplasma volcanium GSS1]
          Length = 116

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 67/111 (60%), Positives = 81/111 (72%), Gaps = 1/111 (0%)

Query: 69  MMQASMPRYDLERFGF-APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMG 127
           MM       D+ RFG    R SPRQSD+MIV+GT+T KMA  +RR+YD+MP P+YVI+ G
Sbjct: 1   MMAIQASDMDISRFGSEIFRNSPRQSDLMIVSGTVTKKMAPRVRRIYDEMPYPKYVIAQG 60

Query: 128 SCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
            C   GG Y+  YSVV G D++VPVD+YVPGCPPT EAL  GI+LLQKKIR
Sbjct: 61  VCVIQGGPYNQGYSVVLGVDKVVPVDVYVPGCPPTPEALTNGIILLQKKIR 111


>gi|256810299|ref|YP_003127668.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanocaldococcus
           fervens AG86]
 gi|256793499|gb|ACV24168.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanocaldococcus
           fervens AG86]
          Length = 148

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 46/129 (35%), Positives = 78/129 (60%), Gaps = 4/129 (3%)

Query: 51  RTGSLMWM---TFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMA 107
           R  S+      T G   C +E++    PRYD+E++G     +PR++DV++V G +T + A
Sbjct: 7   RKRSIHVCVVNTGGCNGCDIEIVSCLAPRYDIEQYGIYVHNNPREADVLLVTGPVTLQWA 66

Query: 108 SALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALI 167
             L+ +Y++ PEP+ V+++G+CA  GG +   + VV G D+++PVD  +PGCPP    +I
Sbjct: 67  ERLKEIYEKTPEPKVVVAVGACALSGGIFKEGH-VVGGVDKVIPVDAKIPGCPPRPSEII 125

Query: 168 YGILLLQKK 176
             +L +  K
Sbjct: 126 EAVLKVAPK 134


>gi|94468067|gb|ABF20066.1| Ech hydrogenase small subunit [Klebsiella pneumoniae]
          Length = 255

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 52/150 (34%), Positives = 75/150 (50%), Gaps = 5/150 (3%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPR 91
              +         L    R+  +  +  G    C +E+     P +D ERFG     SPR
Sbjct: 18  TVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPR 77

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
            +D+++  G +T  M S   R +   P+P+  IS G+C N GG  H  Y V  G D+IVP
Sbjct: 78  HADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGILHDLYCVWGGTDKIVP 137

Query: 152 VDIYVPGCPPTAEALIYGILL----LQKKI 177
           VD+Y+PGCPPT  A +YG  +    L++KI
Sbjct: 138 VDVYIPGCPPTPAATLYGFAMALGLLEQKI 167


>gi|288818462|ref|YP_003432810.1| Ni-Fe hydrogenase small subunit/NADH ubiquinone oxidoreductase 20
           kD subunit [Hydrogenobacter thermophilus TK-6]
 gi|288787862|dbj|BAI69609.1| Ni-Fe hydrogenase small subunit/NADH ubiquinone oxidoreductase 20
           kD subunit [Hydrogenobacter thermophilus TK-6]
 gi|308752052|gb|ADO45535.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Hydrogenobacter
           thermophilus TK-6]
          Length = 155

 Score =  155 bits (392), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 46/144 (31%), Positives = 76/144 (52%), Gaps = 3/144 (2%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWM---TFGLACCAVEMMQASMPRYDLERFGFAPRAS 89
           +  + F V + D  V   +  SL      T     C +E+   + P YD+ERFG    AS
Sbjct: 4   LLKRSFRVKTEDLKVKHKKVISLFIREVDTGSCNACEIEVANLNNPYYDVERFGIKFVAS 63

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
           P+ +DV+++ G +T  M   + + Y+  P P++V+++G C     Y+  SY+V     + 
Sbjct: 64  PKHADVLLITGCVTRNMLIPMIKAYENAPAPKFVLTVGDCTAECPYFKDSYAVEGPVSKH 123

Query: 150 VPVDIYVPGCPPTAEALIYGILLL 173
           +PV ++VPGCPP    +I G+L L
Sbjct: 124 LPVHVHVPGCPPEPAQVIEGLLKL 147


>gi|332092719|gb|EGI97788.1| hydrogenase-4 component I [Shigella boydii 3594-74]
          Length = 227

 Score =  155 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 50/122 (40%), Positives = 71/122 (58%), Gaps = 4/122 (3%)

Query: 60  FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119
            G   C +E+  A  P +D ERFG    +SPR +D+++  G +T  M     R Y+  P+
Sbjct: 17  GGCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMRMPALRAYESAPD 76

Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQK 175
            +  +S G+C  GGG +H  YSV  G D IVP+D+++PGCPPT  A I+G      LLQ+
Sbjct: 77  HKICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHGFAVALGLLQQ 136

Query: 176 KI 177
           KI
Sbjct: 137 KI 138


>gi|312113082|ref|YP_004010678.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Rhodomicrobium
           vannielii ATCC 17100]
 gi|311218211|gb|ADP69579.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Rhodomicrobium
           vannielii ATCC 17100]
          Length = 175

 Score =  155 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 46/127 (36%), Positives = 72/127 (56%), Gaps = 1/127 (0%)

Query: 50  ARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108
            R+ ++  +  G    C +E+     P YD+ERFG    ASPR +DV++V G ++  M  
Sbjct: 42  GRSLAIREVDAGSCNACELEIHALGNPVYDVERFGLKFVASPRHADVLLVTGAVSWNMRE 101

Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168
            L R Y   P+P++V++ G CA G G +  S +      +I+PVD+ +PGCPPT   L+ 
Sbjct: 102 GLERTYAATPDPKWVVAAGDCAAGCGVFAESRACAGAVAKIIPVDLVIPGCPPTPTDLLK 161

Query: 169 GILLLQK 175
           G+L L +
Sbjct: 162 GLLALVE 168


>gi|118581190|ref|YP_902440.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Pelobacter
           propionicus DSM 2379]
 gi|118581198|ref|YP_902448.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Pelobacter
           propionicus DSM 2379]
 gi|118503900|gb|ABL00383.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Pelobacter
           propionicus DSM 2379]
 gi|118503908|gb|ABL00391.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Pelobacter
           propionicus DSM 2379]
          Length = 179

 Score =  155 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 51/121 (42%), Positives = 71/121 (58%), Gaps = 3/121 (2%)

Query: 53  GSLMWMT---FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASA 109
            SL        G   C +E++    P YD+ERFG     SPR +DVM+  G        A
Sbjct: 12  RSLWVYHANSGGCNGCDIEVLNVLTPYYDVERFGIKLVGSPRHADVMLCQGPAMRSTGKA 71

Query: 110 LRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYG 169
           L+R Y  MP P+ V ++GSCA GGG +H SY+V    ++++PV+ YVPGCPP  EA+I+G
Sbjct: 72  LQRAYAAMPGPKLVFAIGSCACGGGIWHDSYAVHGPVEKLIPVNYYVPGCPPRPEAIIWG 131

Query: 170 I 170
           +
Sbjct: 132 V 132


>gi|15668695|ref|NP_247494.1| carbon monoxide dehydrogenase hydrogenase subunit CooL
           [Methanocaldococcus jannaschii DSM 2661]
 gi|38503282|sp|Q57936|Y516_METJA RecName: Full=Uncharacterized protein MJ0516
 gi|2826290|gb|AAB98505.1| carbon monoxide dehydrogenase, hydrogenase subunit CooL (cooL)
           [Methanocaldococcus jannaschii DSM 2661]
          Length = 148

 Score =  155 bits (391), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 47/129 (36%), Positives = 78/129 (60%), Gaps = 4/129 (3%)

Query: 51  RTGSLMWM---TFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMA 107
           R  S+      T G   C +E++    PRYD+E++G     +PR++DV++V G +T + A
Sbjct: 7   RKRSIHVCVVNTGGCNGCDIEIVACLAPRYDIEQYGIYVHNNPREADVLLVTGPVTLQWA 66

Query: 108 SALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALI 167
             L+ +Y++ PEP+ V+++G+CA  GG +   + VV G D+++PVD  +PGCPP    +I
Sbjct: 67  ERLKEIYEKTPEPKIVVAVGACALSGGIFKEGH-VVGGVDKVIPVDAKIPGCPPRPSEII 125

Query: 168 YGILLLQKK 176
             IL +  K
Sbjct: 126 ETILKVAPK 134


>gi|218670928|ref|ZP_03520599.1| NuoB2 NADH I chain B [Rhizobium etli GR56]
          Length = 117

 Score =  155 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 61/114 (53%), Positives = 83/114 (72%), Gaps = 1/114 (0%)

Query: 31  SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP 90
           +       L T+ D +++W+R  +L   TFG+ACCA+EM+ A   RYDL+RFG   R SP
Sbjct: 5   NNAIRDSVLFTTADSIISWSRRSALWPETFGIACCAIEMISAGCARYDLDRFGVVFRPSP 64

Query: 91  RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR 144
           RQSDVMI+AGT+T K A  +RR+YDQMPEPR+VI+MG+CA  GG Y+ +Y+VV+
Sbjct: 65  RQSDVMIIAGTVTRKFAPVVRRLYDQMPEPRWVIAMGTCAISGGVYN-TYAVVQ 117


>gi|289191770|ref|YP_003457711.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanocaldococcus
           sp. FS406-22]
 gi|288938220|gb|ADC68975.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanocaldococcus
           sp. FS406-22]
          Length = 148

 Score =  155 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 46/134 (34%), Positives = 80/134 (59%), Gaps = 4/134 (2%)

Query: 46  LVTWARTGSLMWM---TFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL 102
           +  + R  S+      T G   C +E++    PRYD+E++G     +PR++DV+++ G +
Sbjct: 2   VKEFLRKRSIHVCVINTGGCNGCDIEIVACLAPRYDIEQYGIYVHNNPREADVLLITGPV 61

Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162
           T + A  L+ +Y++ PEP+ V+++G+CA  GG +   + VV G D+++PVD  +PGCPP 
Sbjct: 62  TLQWAERLKEIYEKTPEPKIVVAVGACALSGGIFKEGH-VVGGVDKVIPVDAKIPGCPPR 120

Query: 163 AEALIYGILLLQKK 176
              +I  IL +  K
Sbjct: 121 PSEIIETILKVAPK 134


>gi|82777869|ref|YP_404218.1| hydrogenase 4 Fe-S subunit [Shigella dysenteriae Sd197]
 gi|81242017|gb|ABB62727.1| hydrogenase 4 Fe-S subunit [Shigella dysenteriae Sd197]
          Length = 252

 Score =  155 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 50/122 (40%), Positives = 71/122 (58%), Gaps = 4/122 (3%)

Query: 60  FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119
            G   C +E+  A  P +D ERFG    +SPR +D+++  G +T  M     R Y+  P+
Sbjct: 42  GGCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMRMPALRAYESAPD 101

Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQK 175
            +  +S G+C  GGG +H  YSV  G D IVP+D+++PGCPPT  A I+G      LLQ+
Sbjct: 102 HKICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWLPGCPPTPAATIHGFAVALGLLQQ 161

Query: 176 KI 177
           KI
Sbjct: 162 KI 163


>gi|157954631|gb|ABW05548.1| formate hydrogenlyase subunit H [Thermococcus litoralis DSM 5473]
          Length = 256

 Score =  154 bits (390), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 47/138 (34%), Positives = 75/138 (54%), Gaps = 17/138 (12%)

Query: 53  GSLMWMT---FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASA 109
            S+            C +E++    P YD+ER G    ++PR +  ++V G LT +   +
Sbjct: 4   RSVWVFHLNTGACNGCDIEILDVLTPYYDVERLGVKLVSTPRHAHALLVTGPLTRQSYYS 63

Query: 110 LRRVYDQM-PEPRYVISMGSCANGGGYYHYSYSVVRGCDR-------------IVPVDIY 155
            +R Y+ M P+PR VI++G+CA  GG ++ SY+V R  +R              +PVD+Y
Sbjct: 64  AKRAYEAMPPKPRIVIAIGTCACSGGIFYNSYAVRRESERLGLEYPRAGGTSEFLPVDVY 123

Query: 156 VPGCPPTAEALIYGILLL 173
           +PGCPP  E ++YG+ LL
Sbjct: 124 IPGCPPRPEEILYGLALL 141


>gi|258593559|emb|CBE69900.1| HycG protein [NC10 bacterium 'Dutch sediment']
          Length = 172

 Score =  154 bits (390), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 49/129 (37%), Positives = 73/129 (56%), Gaps = 1/129 (0%)

Query: 49  WARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMA 107
           + R+  +  +  G    C +E+   + P YDLERFG    ASPR +D ++V G +T  MA
Sbjct: 42  FGRSLHIREVDAGSCNGCELEIGALNNPYYDLERFGMHFVASPRHADCLLVTGPVTRNMA 101

Query: 108 SALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALI 167
             L+R YD  P+P+ V+++G CA   G +   Y VV     IVPVD+ V GCPP+   ++
Sbjct: 102 DPLKRTYDATPDPKIVVAVGDCARDCGIFAGGYGVVGPVSAIVPVDVVVGGCPPSPSMIL 161

Query: 168 YGILLLQKK 176
            GIL   ++
Sbjct: 162 AGILAALER 170


>gi|2127915|pir||D64364 formate hydrogenlyase, subunit 7 - Methanococcus jannaschii
          Length = 153

 Score =  154 bits (390), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 47/129 (36%), Positives = 78/129 (60%), Gaps = 4/129 (3%)

Query: 51  RTGSLMWM---TFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMA 107
           R  S+      T G   C +E++    PRYD+E++G     +PR++DV++V G +T + A
Sbjct: 12  RKRSIHVCVVNTGGCNGCDIEIVACLAPRYDIEQYGIYVHNNPREADVLLVTGPVTLQWA 71

Query: 108 SALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALI 167
             L+ +Y++ PEP+ V+++G+CA  GG +   + VV G D+++PVD  +PGCPP    +I
Sbjct: 72  ERLKEIYEKTPEPKIVVAVGACALSGGIFKEGH-VVGGVDKVIPVDAKIPGCPPRPSEII 130

Query: 168 YGILLLQKK 176
             IL +  K
Sbjct: 131 ETILKVAPK 139


>gi|330008023|ref|ZP_08306139.1| NADH ubiquinone oxidoreductase, subunit [Klebsiella sp. MS 92-3]
 gi|328535254|gb|EGF61746.1| NADH ubiquinone oxidoreductase, subunit [Klebsiella sp. MS 92-3]
          Length = 255

 Score =  154 bits (390), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 51/150 (34%), Positives = 75/150 (50%), Gaps = 5/150 (3%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPR 91
              +         L    R+  +  +  G    C +E+     P +D ERFG     SPR
Sbjct: 18  TVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPR 77

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
            +D+++  G +T  M S   R +   P+P+  IS G+C N GG +H  Y V  G D+IVP
Sbjct: 78  HADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVP 137

Query: 152 VDIYVPGCPPTAEALIYGILL----LQKKI 177
           VD+Y+PG PPT  A +YG  +    L++KI
Sbjct: 138 VDVYIPGSPPTPAATLYGFAMALGLLEQKI 167


>gi|309786198|ref|ZP_07680826.1| formate hydrogenlyase subunit 7 [Shigella dysenteriae 1617]
 gi|308925943|gb|EFP71422.1| formate hydrogenlyase subunit 7 [Shigella dysenteriae 1617]
          Length = 213

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 50/126 (39%), Positives = 70/126 (55%), Gaps = 4/126 (3%)

Query: 60  FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119
            G   C +E+     P +D ERFG     SPR +D+++  G +T  M S   R +   P+
Sbjct: 4   GGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPD 63

Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILL----LQK 175
           P+  IS G+C N GG +H  Y V  G D+IVPVD+Y+P CPPT  A +YG  +    L++
Sbjct: 64  PKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPSCPPTPAATLYGFAMALGLLEQ 123

Query: 176 KIRRVG 181
           KI   G
Sbjct: 124 KIHARG 129


>gi|257791323|ref|YP_003181929.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Eggerthella lenta
           DSM 2243]
 gi|317490460|ref|ZP_07948942.1| NADH ubiquinone oxidoreductase [Eggerthella sp. 1_3_56FAA]
 gi|325831504|ref|ZP_08164758.1| NADH ubiquinone oxidoreductase, 20 Kd subunit [Eggerthella sp.
           HGA1]
 gi|257475220|gb|ACV55540.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Eggerthella lenta
           DSM 2243]
 gi|316910453|gb|EFV32080.1| NADH ubiquinone oxidoreductase [Eggerthella sp. 1_3_56FAA]
 gi|325486758|gb|EGC89206.1| NADH ubiquinone oxidoreductase, 20 Kd subunit [Eggerthella sp.
           HGA1]
          Length = 147

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 44/140 (31%), Positives = 78/140 (55%), Gaps = 7/140 (5%)

Query: 52  TGSLMWMTF---GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108
           T S   + +       C +E++ A  P +D+ERFG     +P+ +D+ +V G++  +   
Sbjct: 5   TKSPWVIHYDGSSCNGCDIEVLAALCPGFDVERFGIINTGNPKHADIFLVTGSVNEQNIG 64

Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168
            ++ +Y+QM EP+ VI+ G CA   G +H  Y+V+ G D+ +PVD+Y PGC    EA+I 
Sbjct: 65  VVQEIYNQMVEPKVVIACGICACSAGIFHDCYNVIGGVDQAIPVDVYAPGCAVRPEAIID 124

Query: 169 GILL----LQKKIRRVGNVK 184
            ++     L++K + +   K
Sbjct: 125 AVVQGLGILEEKSKALQAQK 144


>gi|210631897|ref|ZP_03297109.1| hypothetical protein COLSTE_00999 [Collinsella stercoris DSM 13279]
 gi|210159822|gb|EEA90793.1| hypothetical protein COLSTE_00999 [Collinsella stercoris DSM 13279]
          Length = 228

 Score =  154 bits (389), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 42/124 (33%), Positives = 71/124 (57%), Gaps = 3/124 (2%)

Query: 52  TGSLMWMTF---GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108
           + S   + +       C +E++ + MP YD+ERFG     +P+ +D+ +V G++  +   
Sbjct: 5   SKSPWLIHYDGSSCNGCDIEVLDSMMPLYDIERFGIINTGNPKHADIFLVTGSVNAQNIE 64

Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168
            +R +YDQM EP+ V++ G CA  GG +   Y+V+ G D+ +PVD+Y PGC    E +I 
Sbjct: 65  VVRHIYDQMLEPKVVVACGICACTGGVFRDCYNVIGGVDKAIPVDVYAPGCAVRPETIID 124

Query: 169 GILL 172
            +L 
Sbjct: 125 AVLK 128


>gi|320176266|gb|EFW51327.1| Hydrogenase-4 component I [Shigella dysenteriae CDC 74-1112]
          Length = 224

 Score =  154 bits (389), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 50/122 (40%), Positives = 71/122 (58%), Gaps = 4/122 (3%)

Query: 60  FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119
            G   C +E+  A  P +D ERFG    +SPR +D+++  G +T  M     R Y+  P+
Sbjct: 42  GGCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMRMPALRAYESAPD 101

Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQK 175
            +  +S G+C  GGG +H  YSV  G D IVP+D+++PGCPPT  A I+G      LLQ+
Sbjct: 102 HKICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHGFAVALGLLQQ 161

Query: 176 KI 177
           KI
Sbjct: 162 KI 163


>gi|309784775|ref|ZP_07679408.1| hydrogenase-4 component I [Shigella dysenteriae 1617]
 gi|308927145|gb|EFP72619.1| hydrogenase-4 component I [Shigella dysenteriae 1617]
          Length = 231

 Score =  154 bits (389), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 50/122 (40%), Positives = 71/122 (58%), Gaps = 4/122 (3%)

Query: 60  FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119
            G   C +E+  A  P +D ERFG    +SPR +D+++  G +T  M     R Y+  P+
Sbjct: 21  GGCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMRMPALRAYESAPD 80

Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQK 175
            +  +S G+C  GGG +H  YSV  G D IVP+D+++PGCPPT  A I+G      LLQ+
Sbjct: 81  HKICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWLPGCPPTPAATIHGFAVALGLLQQ 140

Query: 176 KI 177
           KI
Sbjct: 141 KI 142


>gi|289806308|ref|ZP_06536937.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
           enterica serovar Typhi str. AG3]
          Length = 160

 Score =  154 bits (389), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 49/141 (34%), Positives = 71/141 (50%), Gaps = 1/141 (0%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPR 91
              +         L    R+  +  +  G    C +E+     P +D ERFG     SPR
Sbjct: 18  TVDESIASMKASLLKNIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPR 77

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
            +D+++  G +T  M S   R +   P+P+  IS G+C N GG +H  Y V  G D+IVP
Sbjct: 78  HADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVP 137

Query: 152 VDIYVPGCPPTAEALIYGILL 172
           VD+Y+PGCPPT  A +YG  +
Sbjct: 138 VDVYIPGCPPTPAATLYGFAM 158


>gi|296109961|ref|YP_003616910.1| hypothetical protein Metin_1296 [Methanocaldococcus infernus ME]
 gi|295434775|gb|ADG13946.1| hypothetical protein Metin_1296 [Methanocaldococcus infernus ME]
          Length = 146

 Score =  154 bits (389), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 50/143 (34%), Positives = 82/143 (57%), Gaps = 4/143 (2%)

Query: 46  LVTWARTGSLM---WMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL 102
           + T+ R  SL      T G   C VE++    PRYDLE++G     +PR++D+++V+G +
Sbjct: 1   MKTFFRKRSLHLCLINTGGCNGCDVEVLSCLAPRYDLEQYGIYFHNNPREADILVVSGPV 60

Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162
           T +    ++ +Y+++PEP+ VI++G+CA  GG +   +   +G   I+PVD  VPGCPP 
Sbjct: 61  TLQWKERIKELYEKVPEPKIVIALGACALSGGIFKEGH-TCKGVLNILPVDAKVPGCPPK 119

Query: 163 AEALIYGILLLQKKIRRVGNVKC 185
              +I  IL +  K+      KC
Sbjct: 120 PAEIIKAILKVAPKLIAEREKKC 142


>gi|188996637|ref|YP_001930888.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Sulfurihydrogenibium
           sp. YO3AOP1]
 gi|188931704|gb|ACD66334.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Sulfurihydrogenibium
           sp. YO3AOP1]
          Length = 173

 Score =  154 bits (389), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 45/126 (35%), Positives = 75/126 (59%), Gaps = 1/126 (0%)

Query: 52  TGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASAL 110
           + ++  +  G    C  E+   S P YD+ERFG    ASP+ +D +++ G LT  M  A+
Sbjct: 43  SFAIREVDSGSCNACEYEISALSNPYYDIERFGVKFVASPKHADAIMITGCLTRNMYEAV 102

Query: 111 RRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGI 170
            + Y+ +P P+++I++G CA  GG +  SY+V+ G    +P+DI++ GCPP    +I G+
Sbjct: 103 MKAYENVPNPKFIIAVGDCALDGGTFKGSYAVMDGIKDKLPIDIWIKGCPPEPIDIISGL 162

Query: 171 LLLQKK 176
           L+L  K
Sbjct: 163 LILLNK 168


>gi|296134788|ref|YP_003642030.1| hypothetical protein Tint_0288 [Thiomonas intermedia K12]
 gi|295794910|gb|ADG29700.1| hypothetical protein Tint_0288 [Thiomonas intermedia K12]
          Length = 172

 Score =  153 bits (388), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 58/162 (35%), Positives = 85/162 (52%), Gaps = 13/162 (8%)

Query: 12  SGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMM 70
           + Q S      DA+  RIS+++ H               R  ++  +  G    C +E+ 
Sbjct: 17  APQISSLPVPPDAEVQRISADLLH------------LIGRAPAIRVVDAGSCNGCELEIN 64

Query: 71  QASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCA 130
             S P Y++E  G    ASPR +D+++V G ++  M  ALRR YD MPEPR V++ G CA
Sbjct: 65  ALSNPYYNIEGLGVHFVASPRHADLLLVTGPVSRHMELALRRTYDAMPEPRLVVAAGDCA 124

Query: 131 NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILL 172
            G G +   Y+V      ++PVD+ VPGCPP+  AL+ GIL 
Sbjct: 125 AGCGVHSQGYAVCGRVAEVLPVDVTVPGCPPSPVALLQGILQ 166


>gi|300921421|ref|ZP_07137781.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 115-1]
 gi|300411655|gb|EFJ94965.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 115-1]
          Length = 176

 Score =  153 bits (388), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 50/122 (40%), Positives = 71/122 (58%), Gaps = 4/122 (3%)

Query: 60  FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119
            G   C +E+  A  P +D ERFG    +SPR +D+++  G +T  M     R Y+  P+
Sbjct: 42  GGCNACEIEIFAAITPVFDAERFGIKVISSPRHADILLFTGAVTRAMRMPALRAYESAPD 101

Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQK 175
            +  +S G+C  GGG +H  YSV  G D IVP+D+++PGCPPT  A I+G      LLQ+
Sbjct: 102 HKICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHGFAVALGLLQQ 161

Query: 176 KI 177
           KI
Sbjct: 162 KI 163


>gi|294338744|emb|CAZ87076.1| putative NADH ubiquinone oxidoreductase domain, 20 kDa subunit
           [Thiomonas sp. 3As]
          Length = 172

 Score =  153 bits (388), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 52/132 (39%), Positives = 75/132 (56%), Gaps = 1/132 (0%)

Query: 42  SVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAG 100
           S D L    R  ++  +  G    C +E+   S P Y++E  G    ASPR +D+++V G
Sbjct: 35  SADLLRLIGRALAIRVVDAGSCNGCELEINALSNPYYNIEGLGVHFVASPRHADLLLVTG 94

Query: 101 TLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCP 160
            ++  M  ALRR YD MPEPR V++ G CA G G +   Y+V      ++PVD+ VPGCP
Sbjct: 95  PVSRHMELALRRTYDAMPEPRLVVAAGDCAAGCGVHSQGYAVCGRVAEVLPVDVTVPGCP 154

Query: 161 PTAEALIYGILL 172
           P+  AL+ GI+ 
Sbjct: 155 PSPVALLQGIMQ 166


>gi|303243875|ref|ZP_07330215.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanothermococcus
           okinawensis IH1]
 gi|302485811|gb|EFL48735.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanothermococcus
           okinawensis IH1]
          Length = 251

 Score =  153 bits (387), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 53/168 (31%), Positives = 86/168 (51%), Gaps = 3/168 (1%)

Query: 9   KIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWM-TFGLACCAV 67
           K        +L++ D     I  E       +  + +L  + ++  L ++   G   C  
Sbjct: 86  KFTRDYRMFALKREDLIIKDILKEPKMDNSKIKKIKKL--FGKSVYLRYVCAGGCNACDA 143

Query: 68  EMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMG 127
           ++   + P YDL RFG    ASPR +D ++V G +T  M  AL + Y+ +P P+ VI++G
Sbjct: 144 DVNVLNTPVYDLSRFGIKFAASPRHADGLVVTGPITKNMELALMKTYNAIPSPKCVIAVG 203

Query: 128 SCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175
           +CA  GG +  +  VV G D+I+PVD+Y+PGCPP     +Y  +   K
Sbjct: 204 ACAISGGLFRENEEVVGGVDKILPVDLYIPGCPPHPFTNLYAFVKFFK 251


>gi|270308816|ref|YP_003330874.1| hydrogenase, HycG subunit [Dehalococcoides sp. VS]
 gi|270154708|gb|ACZ62546.1| hydrogenase, HycG subunit [Dehalococcoides sp. VS]
          Length = 171

 Score =  153 bits (387), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 53/178 (29%), Positives = 93/178 (52%), Gaps = 9/178 (5%)

Query: 3   LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62
           +  V   I   +    + + D+DF ++       G  + +    + + R+ ++  +  G 
Sbjct: 1   MKNVLNNIFKPKVCRQMPEGDSDFDKL-------GIALKTEIHAI-FGRSLAIRALDSGS 52

Query: 63  -ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPR 121
                +E+   S P YD+ERFG +  ASPR +D++IV G ++  MA A+R+ +D MP P+
Sbjct: 53  DNSAEIELNNLSNPYYDIERFGISFVASPRHADILIVTGAVSQNMAIAVRKTFDAMPSPK 112

Query: 122 YVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
            VI++G  A G G     Y V+ G D+I+ VD+ +PG PP    +I  +L L + + +
Sbjct: 113 LVIALGDDACGNGIVCSGYGVLGGVDKILLVDLKIPGNPPEPIQIITALLGLMRSLGK 170


>gi|56477805|ref|YP_159394.1| subunit of putative formate hydrogenlyase-like membrane complex
           [Aromatoleum aromaticum EbN1]
 gi|56313848|emb|CAI08493.1| subunit of putative formate hydrogenlyase-like membrane complex
           [Aromatoleum aromaticum EbN1]
          Length = 187

 Score =  153 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 44/133 (33%), Positives = 72/133 (54%), Gaps = 1/133 (0%)

Query: 44  DQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL 102
           D L    R  ++  +  G    C +E+   + P Y++E  G    ASPR +D+++V G +
Sbjct: 35  DILAILGRALAIRHVDGGSCNGCELEIHALNNPYYNIEGLGIKFVASPRHADMLLVTGPV 94

Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162
           +  M  AL+R YD +P P+ V+++G C   GG +  SY+       ++PVD+ VPGCPP 
Sbjct: 95  SRHMELALKRTYDAIPAPKLVVAIGDCGCTGGIFGESYASCGRISNVIPVDVTVPGCPPP 154

Query: 163 AEALIYGILLLQK 175
              ++ GIL   +
Sbjct: 155 PADILAGILTALR 167


>gi|53804774|ref|YP_113607.1| hydrogenase subunit [Methylococcus capsulatus str. Bath]
 gi|53758535|gb|AAU92826.1| hydrogenase subunit [Methylococcus capsulatus str. Bath]
          Length = 169

 Score =  153 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 50/152 (32%), Positives = 85/152 (55%), Gaps = 9/152 (5%)

Query: 23  DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLER 81
           D +  R+ +E      L   +D    +A + ++  +  G    C +E+     P YD+ER
Sbjct: 23  DPELDRLGAE------LKAVIDG--RFAGSLAIRQVDAGSCNACELEIAALGNPFYDIER 74

Query: 82  FGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYS 141
           +G    ASPR +DV++V G ++  M +AL+  ++  PEP++V+++GSCA  GG +  +Y+
Sbjct: 75  YGVHFVASPRHADVLMVTGPVSRHMQAALQATWEATPEPKWVVAVGSCAADGGEFGVNYA 134

Query: 142 VVRGCDRIVPVDIYVPGCPPTAEALIYGILLL 173
                  ++PVD  +PGCPPT   L+ G+L L
Sbjct: 135 SCGAVGNVLPVDAVIPGCPPTPTDLVRGLLSL 166


>gi|139437055|ref|ZP_01771215.1| Hypothetical protein COLAER_00190 [Collinsella aerofaciens ATCC
           25986]
 gi|133776702|gb|EBA40522.1| Hypothetical protein COLAER_00190 [Collinsella aerofaciens ATCC
           25986]
          Length = 260

 Score =  153 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 47/156 (30%), Positives = 79/156 (50%), Gaps = 5/156 (3%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
             +         L    R+  +  +  G    C +E+  +  P +D+ERFG     SPR 
Sbjct: 20  LDESIEKAKATLLKKIKRSVYVYRVDCGGCNGCEIEIFGSITPVFDVERFGIKVVPSPRH 79

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           +DV++  G +T  M     R ++  P+P+ V+S G+C   GG ++ +Y V  G D+I+PV
Sbjct: 80  ADVLLYTGAVTRAMRMPALRAFEAAPDPKIVVSYGACGCTGGIFYDNYCVWGGTDKILPV 139

Query: 153 DIYVPGCPPTAEALIYGILL----LQKKIRRVGNVK 184
           D+Y+PGCPP+    +YG  +    L +K+     V+
Sbjct: 140 DVYIPGCPPSPAQTVYGFAMALGLLDQKLHAETTVE 175


>gi|254674105|emb|CBA09889.1| NADH dehydrogenase I chain B [Neisseria meningitidis alpha275]
          Length = 111

 Score =  153 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 74/93 (79%), Positives = 86/93 (92%)

Query: 91  RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150
           RQ+D+MIVAGTLTNKMA ALRRVYDQ+ EPR+V+SMGSCANGGGYYHYSYSVVRG DR+V
Sbjct: 15  RQADLMIVAGTLTNKMAPALRRVYDQLAEPRWVLSMGSCANGGGYYHYSYSVVRGADRVV 74

Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
           PVD+YVPGCPPTAEALIYG++ LQ+KI+R   +
Sbjct: 75  PVDVYVPGCPPTAEALIYGLIQLQQKIKRTSTI 107


>gi|332087933|gb|EGI93058.1| hydrogenase-4 component I [Shigella boydii 5216-82]
          Length = 252

 Score =  153 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 49/122 (40%), Positives = 70/122 (57%), Gaps = 4/122 (3%)

Query: 60  FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119
            G   C +E+  A  P +D ERFG    +S R +D+++  G +T  M     R Y+  P+
Sbjct: 42  GGCNACEIEIFAAITPVFDAERFGIKVISSLRHADILLFTGAVTRAMRMPALRAYESAPD 101

Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQK 175
            +  +S G+C  GGG +H  YSV  G D IVP+D+++PGCPPT  A I+G      LLQ+
Sbjct: 102 HKICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHGFAVALGLLQQ 161

Query: 176 KI 177
           KI
Sbjct: 162 KI 163


>gi|282165307|ref|YP_003357692.1| putative [NiFe]-hydrogenase small subunit [Methanocella paludicola
           SANAE]
 gi|282157621|dbj|BAI62709.1| putative [NiFe]-hydrogenase small subunit [Methanocella paludicola
           SANAE]
          Length = 136

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 51/130 (39%), Positives = 73/130 (56%), Gaps = 5/130 (3%)

Query: 52  TGSLMWMT---FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108
             S         G   C +E++    PRYDLER G    ASPR +D+++V G +      
Sbjct: 6   KKSPWIYHAHAGGCVGCDIELLACMGPRYDLERLGIKWVASPRYADILLVTGPVPLHTKP 65

Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHY--SYSVVRGCDRIVPVDIYVPGCPPTAEAL 166
            L RVY Q PEP+ VI+MG+C    G +    +YS+    ++I+PVD+ +PGCPP  EA+
Sbjct: 66  FLERVYAQTPEPKRVIAMGACGTSCGVFIDDENYSIAGPVEKIIPVDVKIPGCPPKPEAI 125

Query: 167 IYGILLLQKK 176
           I GIL + +K
Sbjct: 126 IDGILKVMRK 135


>gi|256827153|ref|YP_003151112.1| ech hydrogenase subunit C [Cryptobacterium curtum DSM 15641]
 gi|256583296|gb|ACU94430.1| ech hydrogenase subunit C [Cryptobacterium curtum DSM 15641]
          Length = 181

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 42/132 (31%), Positives = 75/132 (56%), Gaps = 7/132 (5%)

Query: 52  TGSLMWMTF---GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108
           + S   + +       C +E++ A  P +D ERFG     +P+ +D+++V G++  +   
Sbjct: 5   SKSPWVIHYDASSCNGCDIEVLAALCPGFDAERFGVINTGNPKHADILLVTGSVNERNIK 64

Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168
            ++ +Y+QM EP+ V++ G CA  GG +H  Y+V+ G +  VPVD+Y PGC    EA+I 
Sbjct: 65  VVQELYNQMIEPKAVVACGCCACTGGVFHDCYNVIGGVENAVPVDVYAPGCAIRPEAIID 124

Query: 169 GILL----LQKK 176
            ++     L++K
Sbjct: 125 AVVEAVGILEEK 136


>gi|320355287|ref|YP_004196626.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfobulbus
           propionicus DSM 2032]
 gi|320123789|gb|ADW19335.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfobulbus
           propionicus DSM 2032]
          Length = 248

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 45/129 (34%), Positives = 70/129 (54%), Gaps = 1/129 (0%)

Query: 49  WARTGSLMWMT-FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMA 107
           + R+  L  ++  G   C  +    + P +DL RFG    ASPR +D + V G +T  M 
Sbjct: 120 FGRSLQLRQVSAGGCNACEADTNVLNTPFFDLSRFGIDFVASPRHADGIHVTGPITRNMR 179

Query: 108 SALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALI 167
           +AL   Y  +P P+ VI+ G CA  GG +H S  ++   + ++PVD+Y+PGCPP     +
Sbjct: 180 TALLDTYAAVPAPKVVIASGCCAISGGPFHGSREILGDLNALIPVDLYIPGCPPHPLTTL 239

Query: 168 YGILLLQKK 176
           + +L   KK
Sbjct: 240 HALLAFFKK 248


>gi|91779764|ref|YP_554972.1| putative hydrogenase/oxidoreductase subunit [Burkholderia
           xenovorans LB400]
 gi|91692424|gb|ABE35622.1| putative hydrogenase/oxidoreductase subunit [Burkholderia
           xenovorans LB400]
          Length = 177

 Score =  151 bits (382), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 50/171 (29%), Positives = 84/171 (49%), Gaps = 9/171 (5%)

Query: 6   VNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFG-LAC 64
           + Q   +G  +  + + D  +   S +I  +      +D L    R   +  +  G    
Sbjct: 5   LKQIARTGTPNERVPQADDSWHTESRQIQQE-----ILDVL---GRALCIREIDAGSCNG 56

Query: 65  CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           C +E+   S P Y++E  G    ASPR +D+++V G LT  M  A+ + Y+  P P+ V+
Sbjct: 57  CELEINALSNPYYNIEGLGIRFVASPRHADMLLVTGPLTLNMREAVWQAYEATPHPKLVV 116

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175
           + G CA  GG +  SY+V      ++PVD+ +PGCPP    ++ GIL   +
Sbjct: 117 ATGECACTGGVFRDSYAVCGPLSTLLPVDVTIPGCPPPPIDILRGILTALR 167


>gi|296242761|ref|YP_003650248.1| NADH dehydrogenase 30 kDa subunit [Thermosphaera aggregans DSM
           11486]
 gi|296095345|gb|ADG91296.1| NADH dehydrogenase (ubiquinone) 30 kDa subunit [Thermosphaera
           aggregans DSM 11486]
          Length = 339

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 52/138 (37%), Positives = 77/138 (55%)

Query: 40  VTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVA 99
           ++ +D+LV WAR+ S+  + +  AC AVE     M   D ER+G+ P  SPRQSD+ +  
Sbjct: 1   MSILDKLVRWARSRSIWMIHYCSACGAVEFPPLVMSPLDWERYGYMPAPSPRQSDLYVGM 60

Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGC 159
           G LT K       +Y Q+PEPR+V +  +C   GG Y  SY+  +  D  V V+ +VPGC
Sbjct: 61  GYLTKKTVKLFLNMYRQVPEPRFVAAGCNCTATGGLYWDSYATYKRLDEFVEVEGWVPGC 120

Query: 160 PPTAEALIYGILLLQKKI 177
            P  +     +  L++KI
Sbjct: 121 MPMPDDYFSLLEHLRRKI 138


>gi|91786823|ref|YP_547775.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Polaromonas sp.
           JS666]
 gi|91696048|gb|ABE42877.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Polaromonas sp.
           JS666]
          Length = 181

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 48/140 (34%), Positives = 77/140 (55%), Gaps = 2/140 (1%)

Query: 44  DQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL 102
           D L+   +  ++  +  G    C +E+   + P Y++E  G    ASPR +D+++V G +
Sbjct: 35  DILLILGQALTIRAVDAGSCNGCELEIHALNNPYYNIEGLGIKFVASPRHADMLLVTGPV 94

Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162
           +  M  ALRR YD  PEP+ V+++G C   GG +  SY+       ++PVD+ VPGCPP 
Sbjct: 95  SRHMDEALRRTYDATPEPKLVVAVGDCGCTGGIFGDSYASCGRVANVIPVDVTVPGCPPP 154

Query: 163 AEALIYGILLLQKKIRRVGN 182
              ++ GIL   ++ RR G 
Sbjct: 155 PIEILRGILTAVRQ-RRPGT 173


>gi|308513287|ref|NP_951802.3| NAD-dependent dehydrogenase subunit [Geobacter sulfurreducens PCA]
 gi|39982615|gb|AAR34075.1| NAD-dependent dehydrogenase subunit [Geobacter sulfurreducens PCA]
          Length = 229

 Score =  151 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 43/119 (36%), Positives = 64/119 (53%)

Query: 60  FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119
            G   C  +    S   +DL RFG    ASPR +D + V G +T  M  AL   ++ +P 
Sbjct: 109 GGCNACEADTNVLSTIGWDLGRFGIQFVASPRHADGLWVTGPVTENMREALLMTWEAIPA 168

Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           P+ V++ G+CA GGG +  S     G   I+PVD+++PGCPP    ++ G+L L  +I 
Sbjct: 169 PKIVVACGACAIGGGPFADSPETHNGVADILPVDLFIPGCPPHPATILDGLLRLIGRIE 227


>gi|51245172|ref|YP_065056.1| NADH dehydrogenase, subunit 10 [Desulfotalea psychrophila LSv54]
 gi|50876209|emb|CAG36049.1| probable NADH dehydrogenase, subunit 10 [Desulfotalea psychrophila
           LSv54]
          Length = 128

 Score =  151 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 63/112 (56%), Positives = 81/112 (72%), Gaps = 3/112 (2%)

Query: 69  MMQASMPRYDLERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMG 127
           MM A   RYDL RFG    R S RQSDVMIVAGT++ KMA  ++ +YDQMPEP++VI+MG
Sbjct: 1   MMSAGCARYDLSRFGAEVFRPSARQSDVMIVAGTISKKMAEGIKTLYDQMPEPKWVIAMG 60

Query: 128 SCANGGGY--YHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
           +CA  GG   +   Y ++ G D+I+PVDIY+PGCPP  EALI GI+ L+ +I
Sbjct: 61  NCAISGGPFVFEGQYGIIEGADKILPVDIYIPGCPPRPEALIEGIIELEHQI 112


>gi|91780242|ref|YP_555449.1| putative hydrogenase/oxidoreductase subunit [Burkholderia
           xenovorans LB400]
 gi|91692902|gb|ABE36099.1| Putative hydrogenase/oxidoreductase subunit [Burkholderia
           xenovorans LB400]
          Length = 175

 Score =  151 bits (381), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 45/136 (33%), Positives = 74/136 (54%), Gaps = 2/136 (1%)

Query: 50  ARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108
            R   +  +  G    C +E+   + P Y+LE  G    ASPR +D+++V G LT  M  
Sbjct: 41  GRALCIREIDAGSCNGCELEIHALNNPYYNLEGLGIRFVASPRHADMLLVTGPLTVNMTE 100

Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168
           A+R  Y+  P+P+ V++ G CA  GG +  SY+V     +++PVD+ +PGCPP    ++ 
Sbjct: 101 AVRLAYEATPDPKLVVATGECACTGGMFKESYAVCGPLAKLLPVDVTIPGCPPPPLDILR 160

Query: 169 GILLLQKKIRRVGNVK 184
           GIL   + ++R    +
Sbjct: 161 GILGALR-VKRTTRAR 175


>gi|261402604|ref|YP_003246828.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanocaldococcus
           vulcanius M7]
 gi|261369597|gb|ACX72346.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanocaldococcus
           vulcanius M7]
          Length = 152

 Score =  150 bits (380), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 44/129 (34%), Positives = 77/129 (59%), Gaps = 4/129 (3%)

Query: 51  RTGSLMWM---TFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMA 107
           R  S+      T G   C +E++    PRYD+E++G     +PR++DV+++ G +T + A
Sbjct: 7   RKRSIHVCVVNTGGCNGCDIEIVSCLSPRYDIEQYGIYVHNNPREADVLLITGPVTLQWA 66

Query: 108 SALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALI 167
             L+ +Y++ PEP+ V+++G+CA  GG +   + V+ G  +++PVD  +PGCPP    +I
Sbjct: 67  ERLKEIYEKTPEPKVVVAVGACALSGGIFKEGH-VIGGVHKVIPVDAKIPGCPPRPSEII 125

Query: 168 YGILLLQKK 176
             IL +  K
Sbjct: 126 ETILKVAPK 134


>gi|167839774|ref|ZP_02466458.1| Formate hydrogenlyase subunit 7 [Burkholderia thailandensis MSMB43]
          Length = 174

 Score =  150 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 46/130 (35%), Positives = 70/130 (53%), Gaps = 1/130 (0%)

Query: 50  ARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108
            R   +  +  G    C +E+     P Y++E  G    ASPR +D++++ G LT  M  
Sbjct: 41  GRALCIRAVDAGSCNGCELELHALGNPYYNIEGLGIKFVASPRHADMLLITGPLTLNMRD 100

Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168
           A+R  YD  P P+ V++ G CA  GG +  SY+V    + +VPVDI +PGCPP    L+ 
Sbjct: 101 AVRLAYDATPAPKLVVAAGDCACTGGVFAGSYAVCGPVETLVPVDIAIPGCPPRPLDLLR 160

Query: 169 GILLLQKKIR 178
           GI    +++R
Sbjct: 161 GIRSALERVR 170


>gi|144900610|emb|CAM77474.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 176

 Score =  150 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 56/129 (43%), Positives = 80/129 (62%), Gaps = 1/129 (0%)

Query: 50  ARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108
            R+ ++  +  G    C +E+   + P YDLERFG    ASPR +DV++V G ++  MA 
Sbjct: 46  GRSLAIRAVDAGSCNGCELEIHAVNHPVYDLERFGIKFVASPRHADVLLVTGPVSWNMAE 105

Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168
           ALRR  +  PEPR+V++MG CA  GG +  SY+V  G   IVPVD+ +PGCPPT   +I 
Sbjct: 106 ALRRTVEATPEPRWVVAMGDCAIDGGCFAGSYAVAGGAAAIVPVDMTIPGCPPTPINIIA 165

Query: 169 GILLLQKKI 177
           G+L L + +
Sbjct: 166 GLLALLEAV 174


>gi|255525491|ref|ZP_05392428.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Clostridium
           carboxidivorans P7]
 gi|296188576|ref|ZP_06856964.1| 4Fe-4S binding domain protein [Clostridium carboxidivorans P7]
 gi|255510856|gb|EET87159.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Clostridium
           carboxidivorans P7]
 gi|296046840|gb|EFG86286.1| 4Fe-4S binding domain protein [Clostridium carboxidivorans P7]
          Length = 242

 Score =  150 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 47/134 (35%), Positives = 76/134 (56%), Gaps = 1/134 (0%)

Query: 48  TWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKM 106
            + R+  L  +  G    C +E+       YDL R+G    ASPR +D ++V G +T  M
Sbjct: 109 KFKRSLVLRSVDTGSCNGCMMEVSNTQNTYYDLSRYGIKFAASPRHADGIVVTGPVTLNM 168

Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL 166
             AL + YD + +P+ VI++GSCA  GG +   YSV    + I+ V++ +PGCPP+ +A+
Sbjct: 169 KEALIKTYDAISDPKIVIAVGSCAYSGGIFKDGYSVCEDLNEILKVNLVIPGCPPSPQAI 228

Query: 167 IYGILLLQKKIRRV 180
           +YG+L +  K+   
Sbjct: 229 LYGMLKIINKLDEE 242


>gi|139439383|ref|ZP_01772824.1| Hypothetical protein COLAER_01843 [Collinsella aerofaciens ATCC
           25986]
 gi|133775162|gb|EBA38982.1| Hypothetical protein COLAER_01843 [Collinsella aerofaciens ATCC
           25986]
          Length = 195

 Score =  150 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 40/124 (32%), Positives = 71/124 (57%), Gaps = 3/124 (2%)

Query: 52  TGSLMWMTF---GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108
           + S   + +       C +E++ +  P +D ERFG     +P+ +D+ +V G++  +   
Sbjct: 6   SRSPWVIHYDGSSCNGCDIEVLASLTPLFDAERFGVVNTGNPKHADIFLVTGSVNAQNLP 65

Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168
            +R++Y+QM EP+ V++ G CA  GG +  +Y+V+ G DR +PVD+Y PGC    E +I 
Sbjct: 66  VVRQIYNQMLEPKCVVACGICACSGGVFRDAYNVIGGVDRAIPVDVYAPGCAIRPETVID 125

Query: 169 GILL 172
            I+ 
Sbjct: 126 AIVE 129


>gi|156937336|ref|YP_001435132.1| NADH-quinone oxidoreductase, B subunit [Ignicoccus hospitalis
           KIN4/I]
 gi|156566320|gb|ABU81725.1| NADH-quinone oxidoreductase, B subunit [Ignicoccus hospitalis
           KIN4/I]
          Length = 207

 Score =  150 bits (379), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 61/162 (37%), Positives = 91/162 (56%), Gaps = 13/162 (8%)

Query: 26  FSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA 85
           F ++S E+  K      V + + W+R  SL  +  G+ CCA+EMMQA+   +D ER G  
Sbjct: 6   FKKVSRELIKKS---APVKEALKWSRRNSLWLLHLGIMCCAIEMMQAAFAFHDFERLGVL 62

Query: 86  PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRG 145
            RA+PRQ DV+++ G +  K+A  LRR++ Q P PR+VI MG CA  GG +  S  V+ G
Sbjct: 63  ARATPRQVDVILINGPVNRKLAERLRRLFMQTPGPRFVIVMGECAINGGPWWQSDYVLDG 122

Query: 146 CDRIVP-------VDIYV---PGCPPTAEALIYGILLLQKKI 177
              ++         D++V    GCPP  E L+  IL +++ I
Sbjct: 123 IHEVIESLPEEYRKDVHVVNLAGCPPRPEGLLRAILKMEELI 164


>gi|20093902|ref|NP_613749.1| Ni,Fe-hydrogenase III small subunit [Methanopyrus kandleri AV19]
 gi|19886843|gb|AAM01679.1| Ni,Fe-hydrogenase III small subunit [Methanopyrus kandleri AV19]
          Length = 162

 Score =  150 bits (379), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 45/137 (32%), Positives = 79/137 (57%), Gaps = 4/137 (2%)

Query: 39  LVTSVDQLVTWARTGSLMW---MTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDV 95
           L +++ +L  + R+ S+      T G   C +E++     RYDLE++G     +PR+SDV
Sbjct: 3   LKSALKKLKGFVRSRSIHVTVVNTGGCNGCDIEILACYTYRYDLEQYGIYYHNNPRKSDV 62

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPVDI 154
           +IV G +T +    L ++Y ++PEP+ V+++G+CA  GG ++     V      ++PVD 
Sbjct: 63  LIVTGPVTYQWRDKLVKLYHKVPEPKAVVAVGTCACSGGIFNQRGGRVCGPVREVIPVDA 122

Query: 155 YVPGCPPTAEALIYGIL 171
            VPGCPP  E ++  ++
Sbjct: 123 EVPGCPPRPEEIVSAVV 139


>gi|94313588|ref|YP_586797.1| hydrogenase 4 subunit I [Cupriavidus metallidurans CH34]
 gi|93357440|gb|ABF11528.1| Hydrogenase-4 subunit I [Cupriavidus metallidurans CH34]
          Length = 171

 Score =  150 bits (379), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 42/123 (34%), Positives = 67/123 (54%), Gaps = 1/123 (0%)

Query: 50  ARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108
            R  ++  +  G    C +E+     P Y++E  G    ASPR +D+++V G ++  M  
Sbjct: 40  GRALTIRQVDAGSCNGCELEIHALGNPYYNIEGLGVRFVASPRHADMLLVTGPVSRHMEE 99

Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168
           ALRR Y+  PEP+ V+++G C    G +  SY+       ++PVD+ VPGCPP    ++ 
Sbjct: 100 ALRRTYEATPEPKLVVAVGDCGCTSGIFGESYASCGRVSNVIPVDVSVPGCPPPPIDILR 159

Query: 169 GIL 171
           GIL
Sbjct: 160 GIL 162


>gi|326471804|gb|EGD95813.1| NADH-ubiquinone oxidoreductase 20 kDa subunit [Trichophyton
           tonsurans CBS 112818]
          Length = 204

 Score =  150 bits (379), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 63/128 (49%), Positives = 79/128 (61%)

Query: 17  CSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPR 76
              E+++        E T    ++T  DQ+  WAR GSL  +TFGLACC VEMM  SMPR
Sbjct: 60  SRPERLEVPLPSQGEEPTPLRHILTKFDQVANWARQGSLWPLTFGLACCGVEMMAVSMPR 119

Query: 77  YDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY 136
           YDL+R G   RASPRQ+DV+IV+GT+TNKM  ALR +YDQMP+P++V S G         
Sbjct: 120 YDLDRMGIIYRASPRQADVLIVSGTVTNKMGPALRLLYDQMPDPKWVTSCGRVCAWMSAD 179

Query: 137 HYSYSVVR 144
             S SV  
Sbjct: 180 GRSVSVWD 187


>gi|288961341|ref|YP_003451680.1| NADH dehydrogenase I chain B [Azospirillum sp. B510]
 gi|288913649|dbj|BAI75136.1| NADH dehydrogenase I chain B [Azospirillum sp. B510]
          Length = 163

 Score =  150 bits (379), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 44/132 (33%), Positives = 76/132 (57%), Gaps = 4/132 (3%)

Query: 43  VDQLVTWARTGSLMWM---TFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVA 99
           ++++V  +R  S             C +E+     PRYD E+ G     +P+ +D+++++
Sbjct: 4   IERVVAISRRRSPWICRLNAGSCNGCDIEITPLLSPRYDAEQLGIELHGTPKHADIVLIS 63

Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRG-CDRIVPVDIYVPG 158
           GTLT +   A+  +YDQ+P P+ V+++GSC   G  +  S  V+    D +VPVD++VPG
Sbjct: 64  GTLTLRSRQAILDIYDQVPSPKAVVALGSCPLSGNVFAGSPLVLGQSLDSLVPVDVWVPG 123

Query: 159 CPPTAEALIYGI 170
           CPP  +A++ GI
Sbjct: 124 CPPRPQAILDGI 135


>gi|326484679|gb|EGE08689.1| NADH-ubiquinone oxidoreductase 20 kDa subunit [Trichophyton equinum
           CBS 127.97]
          Length = 204

 Score =  150 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 63/128 (49%), Positives = 79/128 (61%)

Query: 17  CSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPR 76
              E+++        E T    ++T  DQ+  WAR GSL  +TFGLACC VEMM  SMPR
Sbjct: 60  ARPERLEVPLPSQGEEPTPLRHILTKFDQVANWARQGSLWPLTFGLACCGVEMMAVSMPR 119

Query: 77  YDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY 136
           YDL+R G   RASPRQ+DV+IV+GT+TNKM  ALR +YDQMP+P++V S G         
Sbjct: 120 YDLDRMGIIYRASPRQADVLIVSGTVTNKMGPALRLLYDQMPDPKWVTSCGRVCAWMSAD 179

Query: 137 HYSYSVVR 144
             S SV  
Sbjct: 180 GRSVSVWD 187


>gi|67968299|dbj|BAE00199.1| NADH dehydrogenase subunit K [Selaginella uncinata]
          Length = 215

 Score =  150 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 58/175 (33%), Positives = 89/175 (50%), Gaps = 1/175 (0%)

Query: 7   NQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCA 66
           +  I +   +  +  +      +    T    + T+ +     AR  S     +G +CC 
Sbjct: 11  DNSIGNDSVNPVVNSMGRPTPGVDRAATPDSIIPTTPNDFTNRARLPSSRPPPYGTSCCF 70

Query: 67  VEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISM 126
            E       R D +R G  PR+SPRQ+D++I AGT T KMA +L R Y+Q PEP++ I+M
Sbjct: 71  TEFAPLIGSRSDSDRHGSVPRSSPRQADLIITAGTATTKMAPSLVRSYEQTPEPKHAIAM 130

Query: 127 GSCANGGGYYH-YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           G+C   GG      +S VRG D+ +P D Y PG PP  EA++   +  ++K+ R 
Sbjct: 131 GACTVTGGMLSTDPHSTVRGVDKSIPADTYPPGRPPKPEAIVDATIKPREKVSRE 185


>gi|298504862|gb|ADI83585.1| Ech-hydrogenase-related complex, small subunit [Geobacter
           sulfurreducens KN400]
          Length = 251

 Score =  150 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 43/119 (36%), Positives = 64/119 (53%)

Query: 60  FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119
            G   C  +    S   +DL RFG    ASPR +D + V G +T  M  AL   ++ +P 
Sbjct: 131 GGCNACEADTNVLSTIGWDLGRFGIQFVASPRHADGLWVTGPVTENMREALLMTWEAIPA 190

Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           P+ V++ G+CA GGG +  S     G   I+PVD+++PGCPP    ++ G+L L  +I 
Sbjct: 191 PKIVVACGACAIGGGPFAGSPEAHNGVADILPVDLFIPGCPPHPATILDGLLRLIGRIE 249


>gi|240102300|ref|YP_002958608.1| formate hydrogenlyase I subunit H (Mhy1H) [Thermococcus
           gammatolerans EJ3]
 gi|239909853|gb|ACS32744.1| formate hydrogenlyase I subunit H (Mhy1H) [Thermococcus
           gammatolerans EJ3]
          Length = 277

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 48/149 (32%), Positives = 81/149 (54%), Gaps = 18/149 (12%)

Query: 51  RTGSLMWMT---FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMA 107
           R  S+            C +E++    P YDLER G     +PR +D + + G LT +  
Sbjct: 5   RLKSVWVYHVDAGSCNGCDIEVLDVLSPYYDLERLGVKVVPNPRHADALFITGPLTRQTR 64

Query: 108 SALRRVYDQMP-EPRYVISMGSCANGGGYYHYSYSVV-------------RGCDRIVPVD 153
            AL++ Y+ MP +PR V+++G+CA+ GG ++ SY++               G + IVP+D
Sbjct: 65  IALKKAYEAMPPKPRIVVAVGTCASSGGIFYNSYALYNTSPQRGRDRLRSGGPEMIVPID 124

Query: 154 IYVPGCPPTAEALIYGILLLQK-KIRRVG 181
           +Y+PGCPP+ E ++YG+  L   K +++ 
Sbjct: 125 MYIPGCPPSPEEILYGVAQLLGIKEKKMK 153


>gi|149034569|gb|EDL89306.1| NADH dehydrogenase (ubiquinone) Fe-S protein 7, isoform CRA_b
           [Rattus norvegicus]
          Length = 94

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 78/89 (87%), Positives = 84/89 (94%)

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
           MIVAGTLTNKMA ALR+VYDQMPEPRYV+SMGSCANGGGYYHYSYSVVRGCDRIVPVDIY
Sbjct: 1   MIVAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 60

Query: 156 VPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           VPGCPPTAEAL+YGIL LQ+KI+R   +K
Sbjct: 61  VPGCPPTAEALLYGILQLQRKIKREQKLK 89


>gi|256380641|ref|YP_003104301.1| NADH-quinone oxidoreductase, B subunit [Actinosynnema mirum DSM
           43827]
 gi|255924944|gb|ACU40455.1| NADH-quinone oxidoreductase, B subunit [Actinosynnema mirum DSM
           43827]
          Length = 137

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 57/131 (43%), Positives = 84/131 (64%)

Query: 47  VTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKM 106
           + W  T  +  +  GLACC VE+M A    +DL+  G  P  S  ++ V++V+GT+T+ M
Sbjct: 6   LDWGTTYRVTVLDLGLACCGVEVMAALEGGHDLDALGVDPVRSAGEAHVLVVSGTVTDVM 65

Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL 166
             A+   Y +MPEPRYV+S+G+C+N GG Y  SYSV +G D+ +PV + VPGCPP  EAL
Sbjct: 66  LPAVLAAYQEMPEPRYVLSVGACSNTGGPYWDSYSVTKGIDQALPVHVAVPGCPPRPEAL 125

Query: 167 IYGILLLQKKI 177
           + G+  L + +
Sbjct: 126 LEGLAALHRMV 136


>gi|167572898|ref|ZP_02365772.1| putative hydrogenase subunit [Burkholderia oklahomensis C6786]
          Length = 174

 Score =  149 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 44/122 (36%), Positives = 66/122 (54%), Gaps = 1/122 (0%)

Query: 50  ARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108
            R   +  +  G    C +E+     P Y++E  G    ASPR +D++++ G LT  M  
Sbjct: 41  GRALCIRAIDAGSCNGCELELHALGNPYYNIEGLGIKFVASPRHADMLLITGPLTLNMRD 100

Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168
           A+R  YD  P P+ V++ G CA  GG +  SY+V    ++ VPVD+ +PGCPP    L+ 
Sbjct: 101 AVRLAYDATPAPKLVVAAGDCACTGGVFADSYAVCGPLEKRVPVDLTIPGCPPRPIDLLR 160

Query: 169 GI 170
           GI
Sbjct: 161 GI 162


>gi|258653154|ref|YP_003202310.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Nakamurella
           multipartita DSM 44233]
 gi|258556379|gb|ACV79321.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Nakamurella
           multipartita DSM 44233]
          Length = 162

 Score =  149 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 47/120 (39%), Positives = 67/120 (55%), Gaps = 1/120 (0%)

Query: 55  LMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRV 113
           L  +  G    C VE+  A  P YD ER+G    ASPR +D ++V G +T  MA  LRR 
Sbjct: 40  LRHVDAGSCNGCEVEIGAAFGPVYDAERYGARLVASPRHADALLVTGVVTRNMAQPLRRT 99

Query: 114 YDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLL 173
           Y  +P+P+ V+++G CA   G +  +  V      IVPVD+ +PGCPP  E ++ G+  L
Sbjct: 100 YQAVPDPKLVVAVGDCARTCGVFRGAPGVAGAVGDIVPVDLEIPGCPPRPEDIVAGLRKL 159


>gi|186470860|ref|YP_001862178.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Burkholderia
           phymatum STM815]
 gi|184197169|gb|ACC75132.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Burkholderia
           phymatum STM815]
          Length = 176

 Score =  149 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 47/129 (36%), Positives = 72/129 (55%), Gaps = 2/129 (1%)

Query: 50  ARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108
            R   +  +  G    C +E+   + P Y++E  G    ASPR +D+++V G LT  M  
Sbjct: 42  GRALCIRQVDAGSCNGCELEIHALNNPYYNIEGLGIRFVASPRHADMLLVTGPLTLNMKE 101

Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168
           A+RRV+   P P+ V++ G CA  GG +  SY+V      ++PVD+ +PGCPP+   L+ 
Sbjct: 102 AVRRVWQATPHPKLVVAAGDCACTGGIFRDSYAVCGPPSNLLPVDVAIPGCPPSPFDLLT 161

Query: 169 GIL-LLQKK 176
           GIL  L+ K
Sbjct: 162 GILTALRSK 170


>gi|254173148|ref|ZP_04879821.1| hydrogenase-4 component i [Thermococcus sp. AM4]
 gi|214032557|gb|EEB73386.1| hydrogenase-4 component i [Thermococcus sp. AM4]
          Length = 276

 Score =  148 bits (375), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 47/149 (31%), Positives = 80/149 (53%), Gaps = 18/149 (12%)

Query: 51  RTGSLMWMT---FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMA 107
           R  S+            C +E++    P YDLER G     +PR +D + + G LT +  
Sbjct: 4   RLKSVWVYHVDAGSCNGCDIEVLDVLSPYYDLERLGIKVVPNPRHADALFITGPLTRQTR 63

Query: 108 SALRRVYDQMP-EPRYVISMGSCANGGGYYHYSYSVV-------------RGCDRIVPVD 153
             L++ Y+ MP +PR V+++G+CA+ GG ++ SY++               G + IVP+D
Sbjct: 64  IMLKKAYEAMPPKPRIVVAIGTCASSGGIFYNSYALYNTSPQRGRDRLRSGGPEMIVPID 123

Query: 154 IYVPGCPPTAEALIYGILLLQK-KIRRVG 181
           +Y+PGCPP+ E ++YG+  L   K +++ 
Sbjct: 124 MYIPGCPPSPEEILYGVAQLLGIKEKKMK 152


>gi|154244129|ref|YP_001415087.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Xanthobacter
           autotrophicus Py2]
 gi|154158214|gb|ABS65430.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Xanthobacter
           autotrophicus Py2]
          Length = 170

 Score =  148 bits (375), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 48/115 (41%), Positives = 67/115 (58%), Gaps = 1/115 (0%)

Query: 50  ARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108
            R+ S+  +  G    C +E+       YDLERFG    ASPR +DV++V G +   MA 
Sbjct: 40  GRSLSIREVDAGSCNGCELEIHALGNAFYDLERFGLHVVASPRHADVLLVTGPVAKNMAE 99

Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTA 163
           AL+R YD  P P++V++ G CA  GG +  S +   G + IVPVD+ +PGCPPT 
Sbjct: 100 ALKRTYDATPSPKWVVAAGDCAINGGIFAGSSACAGGVEAIVPVDLRIPGCPPTP 154


>gi|317126126|ref|YP_004100238.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Intrasporangium
           calvum DSM 43043]
 gi|315590214|gb|ADU49511.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Intrasporangium
           calvum DSM 43043]
          Length = 157

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 43/114 (37%), Positives = 66/114 (57%)

Query: 60  FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119
                C +E++ A  P YDLER+G    ASPR +DV++V G +T  MA  LR+ Y+ MP 
Sbjct: 41  GSCNGCELEIVSAFGPVYDLERYGVRLVASPRHADVLLVTGPVTRNMADPLRKAYEAMPA 100

Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLL 173
           P+ V+++G CA   G +  +Y V      ++PVD  + GCPP+ E +I  +  +
Sbjct: 101 PKLVVALGDCARNCGIFAGAYGVFGAVSDVIPVDREISGCPPSPEEIIAALREV 154


>gi|23015497|ref|ZP_00055271.1| COG3260: Ni,Fe-hydrogenase III small subunit [Magnetospirillum
           magnetotacticum MS-1]
          Length = 180

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 49/116 (42%), Positives = 72/116 (62%), Gaps = 1/116 (0%)

Query: 52  TGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASAL 110
           + S+  +  G    C +E+   + P YDLERFG    ASPR +DV++V G +T  M  AL
Sbjct: 49  SLSIREVDAGSCNGCELEIHAVNHPIYDLERFGIRFVASPRHADVLLVTGPVTRNMEEAL 108

Query: 111 RRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL 166
           RR  +  PEPR++++MG C   GG +  SY+VV G   +VPVD+++PGCPP+   +
Sbjct: 109 RRTVEATPEPRWIVAMGDCGKDGGCFAGSYAVVGGVSDVVPVDLHIPGCPPSPRQI 164


>gi|189425610|ref|YP_001952787.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Geobacter lovleyi
           SZ]
 gi|189421869|gb|ACD96267.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Geobacter lovleyi
           SZ]
          Length = 252

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 42/130 (32%), Positives = 72/130 (55%), Gaps = 1/130 (0%)

Query: 49  WARTGSLMWMT-FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMA 107
           + R+     ++  G   C  +    +   +DL RFG    ASPR +D + V G ++  M 
Sbjct: 122 FGRSLKFREVSAGGCNACEADSNVLTTIGWDLGRFGIQFVASPRHADGIWVTGPVSENMR 181

Query: 108 SALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALI 167
            AL + ++ +P P+ V++ G+CA  GG +  S  +  G D ++PVD+Y+PGCPP    ++
Sbjct: 182 EALLKTWEAIPAPKIVVACGACAIAGGPFSGSPQISLGLDTLLPVDLYIPGCPPHPATIL 241

Query: 168 YGILLLQKKI 177
            G+L LQ ++
Sbjct: 242 DGLLRLQGRL 251


>gi|209515026|ref|ZP_03263895.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Burkholderia sp.
           H160]
 gi|209504652|gb|EEA04639.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Burkholderia sp.
           H160]
          Length = 169

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 49/150 (32%), Positives = 75/150 (50%), Gaps = 1/150 (0%)

Query: 23  DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLER 81
             + +  + +  H G      D L    R   +  +  G    C +E+   + P Y++E 
Sbjct: 14  PDESAPAAEDAWHHGERQLRQDILDLLGRALCIRQIDAGSCNGCELEIHALNNPYYNIEG 73

Query: 82  FGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYS 141
            G    ASPR +D+++V G +T  M +AL   YD  P P+ V++ G CA  GG +  SY+
Sbjct: 74  LGIKFVASPRHADLLLVTGPVTLNMRAALLAAYDATPAPKLVVAAGECACTGGIFADSYA 133

Query: 142 VVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171
           V      I+PVD+ +PGCPP    L+ GIL
Sbjct: 134 VCGPVSSILPVDVMIPGCPPPPVDLLRGIL 163


>gi|294646453|ref|ZP_06724094.1| NADH-quinone oxidoreductase, B subunit [Bacteroides ovatus SD CC
           2a]
 gi|292638224|gb|EFF56601.1| NADH-quinone oxidoreductase, B subunit [Bacteroides ovatus SD CC
           2a]
          Length = 115

 Score =  148 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 53/92 (57%), Positives = 75/92 (81%)

Query: 87  RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGC 146
           RASPRQ+D+++V GT+TNKMA  L+R+YDQMP+P+YV+++G CA  GG +  SY VV G 
Sbjct: 2   RASPRQADMIMVCGTITNKMAPVLKRLYDQMPDPKYVVAVGGCAVSGGPFKKSYHVVNGV 61

Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           D+I+PVD+Y+PGCPP  EA  YG++ LQ+K++
Sbjct: 62  DKILPVDVYIPGCPPRPEAFYYGMMQLQRKVK 93


>gi|221198810|ref|ZP_03571855.1| hydrogenase-4 component I [Burkholderia multivorans CGD2M]
 gi|221205071|ref|ZP_03578087.1| hydrogenase-4 component I [Burkholderia multivorans CGD2]
 gi|221174862|gb|EEE07293.1| hydrogenase-4 component I [Burkholderia multivorans CGD2]
 gi|221181261|gb|EEE13663.1| hydrogenase-4 component I [Burkholderia multivorans CGD2M]
          Length = 171

 Score =  148 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 43/123 (34%), Positives = 67/123 (54%), Gaps = 1/123 (0%)

Query: 50  ARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108
            R   +  +  G    C +E+   + P Y++E  G    ASPR +D+++V G +T  M +
Sbjct: 41  GRALCIRQIDAGSCNGCELEIHALNNPYYNIEGLGIKFVASPRHADLLLVTGPVTLNMKA 100

Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168
           A+   YD  P P+ V++ G CA  GG +  SY+V      ++PVD+ +PGCPP    L+ 
Sbjct: 101 AVLAAYDATPAPKLVVAAGECACTGGIFADSYAVCGPVSSVLPVDVTIPGCPPPPIDLLR 160

Query: 169 GIL 171
           GIL
Sbjct: 161 GIL 163


>gi|302039526|ref|YP_003799848.1| putative formate hydrogenlyase small subunit [Candidatus Nitrospira
           defluvii]
 gi|300607590|emb|CBK43923.1| putative Formate hydrogenlyase, small subunit [Candidatus
           Nitrospira defluvii]
          Length = 173

 Score =  148 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 45/135 (33%), Positives = 76/135 (56%), Gaps = 1/135 (0%)

Query: 42  SVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAG 100
           ++++   + R+ ++  +  G    C +EM   + P YD+ERFG    ASPR +D ++V G
Sbjct: 32  AIEKAKPFRRSMTIREVDTGSCNACEMEMNALANPVYDVERFGVHIAASPRHADALVVTG 91

Query: 101 TLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCP 160
            +T  M  AL+ VY    +P+ VI++G CA   G +  SY+V    DR +PVD+ + GCP
Sbjct: 92  PVTVNMERALKDVYKATADPKIVIALGDCAVNCGMFKGSYAVTGPVDRHIPVDVRISGCP 151

Query: 161 PTAEALIYGILLLQK 175
           P    ++  +  L++
Sbjct: 152 PRPAEILAVLAKLRQ 166


>gi|295699055|ref|YP_003606948.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Burkholderia sp.
           CCGE1002]
 gi|295438268|gb|ADG17437.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Burkholderia sp.
           CCGE1002]
          Length = 169

 Score =  148 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 47/131 (35%), Positives = 69/131 (52%), Gaps = 1/131 (0%)

Query: 42  SVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAG 100
             D L    R   +  +  G    C +E+   + P Y++E  G    ASPR +D+++V G
Sbjct: 33  REDILDLLGRALCIRQIDAGSCNGCELEIHALNNPYYNIEGLGIKFVASPRHADLLLVTG 92

Query: 101 TLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCP 160
            +T  M +AL   YD  P P+ V++ G CA  GG +  SY+V      I+PVD+ +PGCP
Sbjct: 93  PVTLNMRAALLAAYDATPAPKLVVAAGECACTGGIFANSYAVCGPVSSILPVDVTIPGCP 152

Query: 161 PTAEALIYGIL 171
           P    L+ GIL
Sbjct: 153 PPPIDLLRGIL 163


>gi|296161106|ref|ZP_06843916.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Burkholderia sp.
           Ch1-1]
 gi|295888629|gb|EFG68437.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Burkholderia sp.
           Ch1-1]
          Length = 176

 Score =  148 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 43/127 (33%), Positives = 68/127 (53%), Gaps = 1/127 (0%)

Query: 50  ARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108
            R   +  +  G    C +E+   S P Y++E  G    ASPR +D+++V G LT  M  
Sbjct: 41  GRALCIREIDAGSCNGCELEINALSNPYYNIEGLGIRIVASPRHADMLLVTGPLTLNMRE 100

Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168
           A+ + Y+  P P+ V++ G CA  GG +  SY+V      ++PVD+ +PGCPP    ++ 
Sbjct: 101 AVWQAYEATPHPKLVVAAGECACTGGMFRDSYAVCGPLSTLLPVDVTIPGCPPPPIDILR 160

Query: 169 GILLLQK 175
           GIL   +
Sbjct: 161 GILTALR 167


>gi|323141862|ref|ZP_08076723.1| 4Fe-4S binding domain protein [Phascolarctobacterium sp. YIT 12067]
 gi|322413609|gb|EFY04467.1| 4Fe-4S binding domain protein [Phascolarctobacterium sp. YIT 12067]
          Length = 240

 Score =  148 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 52/132 (39%), Positives = 74/132 (56%), Gaps = 1/132 (0%)

Query: 50  ARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108
            R+  +  +  G    C  E+   S P YDL R+G A  ASPR +D+++V G +T  +  
Sbjct: 108 GRSLHVRHLDAGSCNACDFELGAMSNPVYDLHRYGIAFVASPRHADMLMVTGVVTRNLEQ 167

Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168
           ALR  YD MPEP+ V++ G+CA GG  Y  +Y+VV     +VPVDI VPGCPP   A+I 
Sbjct: 168 ALRMTYDAMPEPKMVMACGACACGGETYGSTYAVVGRAADVVPVDIAVPGCPPRPAAIIV 227

Query: 169 GILLLQKKIRRV 180
            +      ++  
Sbjct: 228 ALCAAADMLKER 239


>gi|167819736|ref|ZP_02451416.1| putative hydrogenase subunit [Burkholderia pseudomallei 91]
          Length = 172

 Score =  148 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 44/128 (34%), Positives = 68/128 (53%), Gaps = 1/128 (0%)

Query: 50  ARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108
            R   +  +  G    C +E+     P Y++E  G    ASPR +D++++ G LT  M  
Sbjct: 41  GRALCIRAIDAGSCNGCELELHALGNPYYNIESLGIKFVASPRHADMLLITGPLTLNMRD 100

Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168
           A+R  YD  P P+ V++ G CA  GG +  SY+V    + +VPVD+ +PGCPP    L+ 
Sbjct: 101 AVRLAYDATPAPKLVVAAGDCACTGGVFAGSYAVCGPIETLVPVDVAIPGCPPRPIELLR 160

Query: 169 GILLLQKK 176
           GI    ++
Sbjct: 161 GIRGALER 168


>gi|326483737|gb|EGE07747.1| NADH dehydrogenase beta subunit [Trichophyton equinum CBS 127.97]
          Length = 147

 Score =  148 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 63/128 (49%), Positives = 79/128 (61%)

Query: 17  CSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPR 76
              E+++        E T    ++T  DQ+  WAR GSL  +TFGLACC VEMM  SMPR
Sbjct: 3   ARPERLEVPLPSQGEEPTPLRHILTKFDQVANWARQGSLWPLTFGLACCGVEMMAVSMPR 62

Query: 77  YDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY 136
           YDL+R G   RASPRQ+DV+IV+GT+TNKM  ALR +YDQMP+P++V S G         
Sbjct: 63  YDLDRMGIIYRASPRQADVLIVSGTVTNKMGPALRLLYDQMPDPKWVTSCGRVCAWMSAD 122

Query: 137 HYSYSVVR 144
             S SV  
Sbjct: 123 GRSVSVWD 130


>gi|53722170|ref|YP_111155.1| hydrogenase/oxidoreductase subunit [Burkholderia pseudomallei
           K96243]
 gi|126443278|ref|YP_001062608.1| putative hydrogenase subunit [Burkholderia pseudomallei 668]
 gi|126457616|ref|YP_001075561.1| putative hydrogenase subunit [Burkholderia pseudomallei 1106a]
 gi|134283533|ref|ZP_01770233.1| putative hydrogenase subunit [Burkholderia pseudomallei 305]
 gi|167723605|ref|ZP_02406841.1| putative hydrogenase subunit [Burkholderia pseudomallei DM98]
 gi|167849586|ref|ZP_02475094.1| putative hydrogenase subunit [Burkholderia pseudomallei B7210]
 gi|167906546|ref|ZP_02493751.1| putative hydrogenase subunit [Burkholderia pseudomallei NCTC 13177]
 gi|167922746|ref|ZP_02509837.1| putative hydrogenase subunit [Burkholderia pseudomallei BCC215]
 gi|217418381|ref|ZP_03449888.1| putative hydrogenase subunit [Burkholderia pseudomallei 576]
 gi|226200219|ref|ZP_03795764.1| putative hydrogenase subunit [Burkholderia pseudomallei Pakistan 9]
 gi|237510550|ref|ZP_04523265.1| formate hydrogenlyase subunit 7 [Burkholderia pseudomallei MSHR346]
 gi|242311023|ref|ZP_04810040.1| putative hydrogenase subunit [Burkholderia pseudomallei 1106b]
 gi|254190228|ref|ZP_04896737.1| putative hydrogenase subunit [Burkholderia pseudomallei Pasteur
           52237]
 gi|254193464|ref|ZP_04899898.1| putative hydrogenase subunit [Burkholderia pseudomallei S13]
 gi|254262469|ref|ZP_04953334.1| putative hydrogenase subunit [Burkholderia pseudomallei 1710a]
 gi|52212584|emb|CAH38610.1| putative hydrogenase/oxidoreductase subunit [Burkholderia
           pseudomallei K96243]
 gi|126222769|gb|ABN86274.1| putative hydrogenase subunit [Burkholderia pseudomallei 668]
 gi|126231384|gb|ABN94797.1| putative hydrogenase subunit [Burkholderia pseudomallei 1106a]
 gi|134245282|gb|EBA45376.1| putative hydrogenase subunit [Burkholderia pseudomallei 305]
 gi|157937905|gb|EDO93575.1| putative hydrogenase subunit [Burkholderia pseudomallei Pasteur
           52237]
 gi|169650217|gb|EDS82910.1| putative hydrogenase subunit [Burkholderia pseudomallei S13]
 gi|217397685|gb|EEC37700.1| putative hydrogenase subunit [Burkholderia pseudomallei 576]
 gi|225927727|gb|EEH23769.1| putative hydrogenase subunit [Burkholderia pseudomallei Pakistan 9]
 gi|235002755|gb|EEP52179.1| formate hydrogenlyase subunit 7 [Burkholderia pseudomallei MSHR346]
 gi|242134262|gb|EES20665.1| putative hydrogenase subunit [Burkholderia pseudomallei 1106b]
 gi|254213471|gb|EET02856.1| putative hydrogenase subunit [Burkholderia pseudomallei 1710a]
          Length = 172

 Score =  147 bits (372), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 44/128 (34%), Positives = 68/128 (53%), Gaps = 1/128 (0%)

Query: 50  ARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108
            R   +  +  G    C +E+     P Y++E  G    ASPR +D++++ G LT  M  
Sbjct: 41  GRALCIRAIDAGSCNGCELELHALGNPYYNIEGLGIKFVASPRHADMLLITGPLTLNMRD 100

Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168
           A+R  YD  P P+ V++ G CA  GG +  SY+V    + +VPVD+ +PGCPP    L+ 
Sbjct: 101 AVRLAYDATPAPKLVVAAGDCACTGGVFAGSYAVCGPIETLVPVDVAIPGCPPRPIELLR 160

Query: 169 GILLLQKK 176
           GI    ++
Sbjct: 161 GIRGALER 168


>gi|239616971|ref|YP_002940293.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Kosmotoga olearia
           TBF 19.5.1]
 gi|239505802|gb|ACR79289.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Kosmotoga olearia
           TBF 19.5.1]
          Length = 137

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 48/129 (37%), Positives = 72/129 (55%), Gaps = 3/129 (2%)

Query: 52  TGSLMWMT---FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108
             SL            C +E++    PRYDLERFG     S R +DV++V G    K++ 
Sbjct: 9   KRSLWVFHVSASPCNNCDIEILDMLTPRYDLERFGIKLVGSVRHADVLLVTGMGGCKVSE 68

Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168
            + R+Y+Q P+P +VI++G+C   G  +  SY+     DR VPVD+Y+PGCPP  E +I 
Sbjct: 69  RVIRIYNQAPKPVFVIAVGTCPVAGATFKESYTRCGPLDRFVPVDLYIPGCPPKPETMIA 128

Query: 169 GILLLQKKI 177
           G+  L  ++
Sbjct: 129 GLSELLGRL 137


>gi|149280569|ref|ZP_01886685.1| NADH dehydrogenase I, chain B [Pedobacter sp. BAL39]
 gi|149228684|gb|EDM34087.1| NADH dehydrogenase I, chain B [Pedobacter sp. BAL39]
          Length = 128

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 51/113 (45%), Positives = 76/113 (67%), Gaps = 2/113 (1%)

Query: 73  SMPRYDLERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCAN 131
               YD  RFG      SPRQ+D+++V GT+  KM+  L++VY QM EPR+VI++G+CA+
Sbjct: 1   MGSHYDFGRFGSERLSFSPRQADLLMVMGTIAKKMSPVLKQVYLQMAEPRWVIAVGACAS 60

Query: 132 GGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
            GG +  +YSV++G D I+PVD+YVPGCPP  EA++ G   +Q+ +R     +
Sbjct: 61  SGGIF-DTYSVLQGIDEIIPVDVYVPGCPPRPEAILDGFGKIQELVRNESGRR 112


>gi|45359024|ref|NP_988581.1| energy conserving hydrogenase A small subunit [Methanococcus
           maripaludis S2]
 gi|45047899|emb|CAF31017.1| energy conserving hydrogenase A small subunit [Methanococcus
           maripaludis S2]
          Length = 156

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 45/152 (29%), Positives = 81/152 (53%), Gaps = 16/152 (10%)

Query: 46  LVTWARTGSL---MWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL 102
           +  + R  S+   +  T G   C +E++    PRYD+E++G     +PR++DV++V G +
Sbjct: 2   IKDFVRKRSINVCLVNTGGCNGCDIEIVSCLAPRYDIEQYGIYVHNNPREADVLVVTGPV 61

Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162
           T      L  +Y++ PEP+ VI++G+CA  GG +   + +    D+++PVD  +PGCPP 
Sbjct: 62  TGAWEKRLLEIYEKTPEPKIVIAVGACALSGGIFKEGH-IHGPVDKVIPVDAKLPGCPPR 120

Query: 163 AEALIYGIL------------LLQKKIRRVGN 182
              +I  ++            LL +K++   N
Sbjct: 121 PSEIISAVVSIAPDALAAKEKLLNQKLKEEKN 152


>gi|152990463|ref|YP_001356185.1| Ni-Fe hydrogenase, small subunit HycG [Nitratiruptor sp. SB155-2]
 gi|151422324|dbj|BAF69828.1| Ni-Fe hydrogenase, small subunit HycG [Nitratiruptor sp. SB155-2]
          Length = 167

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 50/165 (30%), Positives = 85/165 (51%), Gaps = 14/165 (8%)

Query: 8   QKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCA 66
           +K I  Q+S + E+++     + SEI  K            ++ + ++  +  G    C 
Sbjct: 10  RKGIQTQNSWADEELETIKKSLKSEIGKK------------FSGSLAIRMVDSGSCNACE 57

Query: 67  VEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISM 126
            E    S P YDLER G    ASPR +D+++V+G +T  M   L   Y+Q+P P++VI++
Sbjct: 58  AECNALSNPYYDLERLGIRFVASPRHADILLVSGVVTFNMLPHLLDAYEQLPSPKWVITL 117

Query: 127 GSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171
           G C   G  +  S+++       +PV  ++PGCPPT + ++ G L
Sbjct: 118 GDC-TQGTLFKDSFAIKGPVKEHLPVAYHIPGCPPTPDEIVRGFL 161


>gi|167742571|ref|ZP_02415345.1| putative hydrogenase subunit [Burkholderia pseudomallei 14]
 gi|167914902|ref|ZP_02501993.1| putative hydrogenase subunit [Burkholderia pseudomallei 112]
 gi|254300487|ref|ZP_04967933.1| putative hydrogenase subunit [Burkholderia pseudomallei 406e]
 gi|157810342|gb|EDO87512.1| putative hydrogenase subunit [Burkholderia pseudomallei 406e]
          Length = 172

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 44/128 (34%), Positives = 68/128 (53%), Gaps = 1/128 (0%)

Query: 50  ARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108
            R   +  +  G    C +E+     P Y++E  G    ASPR +D++++ G LT  M  
Sbjct: 41  GRALCIRAIDAGSCNGCELELHALGNPYYNIEGLGIKFVASPRHADMLLITGPLTLNMRD 100

Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168
           A+R  YD  P P+ V++ G CA  GG +  SY+V    + +VPVD+ +PGCPP    L+ 
Sbjct: 101 AVRLAYDATPAPKLVVAAGDCACTGGVFAGSYAVCGPIETLVPVDVAIPGCPPRPIELLR 160

Query: 169 GILLLQKK 176
           GI    ++
Sbjct: 161 GIRGALER 168


>gi|327304110|ref|XP_003236747.1| NADH-ubiquinone oxidoreductase subunit B [Trichophyton rubrum CBS
           118892]
 gi|326462089|gb|EGD87542.1| NADH-ubiquinone oxidoreductase subunit B [Trichophyton rubrum CBS
           118892]
          Length = 182

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 58/108 (53%), Positives = 75/108 (69%)

Query: 17  CSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPR 76
              ++++        E T    ++T  DQ+  WAR GSL  +TFGLACC VEMM  SMPR
Sbjct: 60  ARPKRLEVPLPSQGEEPTPLRHILTKFDQVANWARQGSLWPLTFGLACCGVEMMAVSMPR 119

Query: 77  YDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
           YDL+R G   RASPRQ+DV+IV+GT+TNKM  ALR +YDQMP+P++VI
Sbjct: 120 YDLDRMGIIYRASPRQADVLIVSGTVTNKMGPALRLLYDQMPDPKWVI 167


>gi|296134448|ref|YP_003641695.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Thermincola sp. JR]
 gi|296033026|gb|ADG83794.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Thermincola potens
           JR]
          Length = 143

 Score =  147 bits (371), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 49/128 (38%), Positives = 74/128 (57%), Gaps = 4/128 (3%)

Query: 52  TGSLMWM---TFGLACCAVEMMQASM-PRYDLERFGFAPRASPRQSDVMIVAGTLTNKMA 107
           T S             C VE+   ++ PRYD+ER G     SP+ +D+++V G LT K+ 
Sbjct: 10  TRSPWLYRINAGSCNGCDVELATTALIPRYDVERLGCKYCGSPKHADIVLVTGPLTAKVK 69

Query: 108 SALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALI 167
             + RVYD++P+P+ V+++G C   GG +  SY+V    D  +PVD+ VPGCPP  +A+I
Sbjct: 70  DKVLRVYDEIPDPKVVVAVGICPVSGGVFRDSYAVHGPVDSYIPVDVNVPGCPPRPQAII 129

Query: 168 YGILLLQK 175
            GI+   K
Sbjct: 130 DGIVEAIK 137


>gi|83717494|ref|YP_439462.1| formate hydrogenlyase subunit 7 [Burkholderia thailandensis E264]
 gi|167577905|ref|ZP_02370779.1| Formate hydrogenlyase subunit 7 [Burkholderia thailandensis TXDOH]
 gi|167616030|ref|ZP_02384665.1| Formate hydrogenlyase subunit 7 [Burkholderia thailandensis Bt4]
 gi|257142585|ref|ZP_05590847.1| formate hydrogenlyase subunit 7 [Burkholderia thailandensis E264]
 gi|83651319|gb|ABC35383.1| Formate hydrogenlyase subunit 7 [Burkholderia thailandensis E264]
          Length = 174

 Score =  147 bits (371), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 44/130 (33%), Positives = 69/130 (53%), Gaps = 1/130 (0%)

Query: 50  ARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108
            R   +  +  G    C +E+     P Y++E  G    ASPR +D++++ G LT  M  
Sbjct: 41  GRALCIRAIDAGSCNGCELELNALGNPYYNIEGLGIKFVASPRHADMLLITGPLTLNMRD 100

Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168
           A+R  YD  P P+ V++ G CA  GG +  SY+V    + +VPVD+ + GCPP    L+ 
Sbjct: 101 AVRLAYDATPAPKLVVAAGDCACTGGVFAGSYAVCGPVETLVPVDVAIAGCPPRPIDLLR 160

Query: 169 GILLLQKKIR 178
           GI    +++R
Sbjct: 161 GIRGALERVR 170


>gi|86160078|ref|YP_466863.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|85776589|gb|ABC83426.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Anaeromyxobacter
           dehalogenans 2CP-C]
          Length = 256

 Score =  147 bits (371), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 47/133 (35%), Positives = 74/133 (55%), Gaps = 4/133 (3%)

Query: 50  ARTGSLMWMT-FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108
            R+  L  ++  G + C  E+  +   ++D+ RFG    ASPR +D ++V G +T  M  
Sbjct: 124 GRSLKLRQVSAGGCSGCEAELNASGNIQFDVGRFGVQFVASPRHADGLVVTGPVTENMRL 183

Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCD---RIVPVDIYVPGCPPTAEA 165
           ALR+ ++ +P PR VI++G+CA  GG +  S     G       +PVD+YVPGCPP    
Sbjct: 184 ALRQTWEAVPAPRIVIAVGACAISGGPFAGSPVTCGGAAAALDGIPVDLYVPGCPPHPIT 243

Query: 166 LIYGILLLQKKIR 178
            + GIL L  +++
Sbjct: 244 FLDGILRLLGRLK 256


>gi|113868177|ref|YP_726666.1| formate hydrogenlyase subunit 7 [Ralstonia eutropha H16]
 gi|113526953|emb|CAJ93298.1| formate hydrogenlyase subunit 7 [Ralstonia eutropha H16]
          Length = 174

 Score =  147 bits (371), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 42/125 (33%), Positives = 65/125 (52%), Gaps = 3/125 (2%)

Query: 60  FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119
                C +E+     P Y++E  G    ASPR +D+++V G ++  M  AL R Y   PE
Sbjct: 52  GSCNGCELEIHALGNPYYNIEGLGIKFVASPRHADMLLVTGPVSRHMEEALLRTYAATPE 111

Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           P+ V+++G C   GG +  SY+       ++PVDI VPGCPP    ++  IL     +R+
Sbjct: 112 PKLVVAIGDCGCTGGIFGESYASCGRVANVIPVDITVPGCPPPPIEILRAIL---SAVRQ 168

Query: 180 VGNVK 184
            G  +
Sbjct: 169 TGATR 173


>gi|258514106|ref|YP_003190328.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfotomaculum
           acetoxidans DSM 771]
 gi|257777811|gb|ACV61705.1| Hydrogenase, small subunit-like protein [Desulfotomaculum
           acetoxidans DSM 771]
          Length = 236

 Score =  147 bits (371), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 46/122 (37%), Positives = 75/122 (61%), Gaps = 1/122 (0%)

Query: 51  RTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASA 109
           R+  + ++  G    C  E+   + P YD++++G    ASPR +D+++V G +T  +  A
Sbjct: 109 RSLHIRYVDAGACNGCDFEINSMTNPVYDIQQYGVDFVASPRHADMLLVTGVVTRNLEIA 168

Query: 110 LRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYG 169
           L + Y+  P P  V+++G+CA GGG +  +Y+   G D+ +PVD+YVPGCPPT   +I G
Sbjct: 169 LHKTYEACPRPALVVAVGACACGGGVFKEAYASGGGVDKFLPVDVYVPGCPPTPAQIIKG 228

Query: 170 IL 171
           IL
Sbjct: 229 IL 230


>gi|308271021|emb|CBX27631.1| hypothetical protein N47_H24530 [uncultured Desulfobacterium sp.]
          Length = 263

 Score =  146 bits (370), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 45/131 (34%), Positives = 71/131 (54%), Gaps = 1/131 (0%)

Query: 49  WARTGSLMWMT-FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMA 107
           + R+  L  ++  G   C  +    S   +D+ RFG    ASPR +D +++ G +T  M 
Sbjct: 125 FGRSLKLRQVSAGGCNACEADSNVLSTLAWDMGRFGIQFVASPRHADGLLITGPVTENMR 184

Query: 108 SALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALI 167
            AL + Y  +PEP+ VI++GSCA  GG +        G   IVPVD+++PGCPP    ++
Sbjct: 185 IALEKTYAAVPEPKIVIAVGSCAISGGPFIDHPEQHNGAMDIVPVDLFIPGCPPHPLTIL 244

Query: 168 YGILLLQKKIR 178
            G+L    +I+
Sbjct: 245 DGLLRFIGRIK 255


>gi|167828121|ref|ZP_02459592.1| putative hydrogenase subunit [Burkholderia pseudomallei 9]
          Length = 165

 Score =  146 bits (370), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 44/122 (36%), Positives = 66/122 (54%), Gaps = 1/122 (0%)

Query: 50  ARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108
            R   +  +  G    C +E+     P Y++E  G    ASPR +D++++ G LT  M  
Sbjct: 41  GRALCIRAIDAGSCNGCELELHALGNPYYNIEGLGIKFVASPRHADMLLITGPLTLNMRD 100

Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168
           A+R  YD  P P+ V++ G CA  GG +  SY+V    + +VPVD+ +PGCPP    L+ 
Sbjct: 101 AVRLAYDATPAPKLVVAAGDCACTGGVFAGSYAVCGPIETLVPVDVAIPGCPPRPIELLR 160

Query: 169 GI 170
           GI
Sbjct: 161 GI 162


>gi|118578783|ref|YP_900033.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Pelobacter
           propionicus DSM 2379]
 gi|118501493|gb|ABK97975.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Pelobacter
           propionicus DSM 2379]
          Length = 252

 Score =  146 bits (370), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 46/136 (33%), Positives = 73/136 (53%), Gaps = 1/136 (0%)

Query: 44  DQLVTWARTGSLMWMT-FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL 102
           + L  + R+  L  ++  G   C  +    S   +DL RFG    ASPR +D + + G +
Sbjct: 117 ELLRLYGRSLKLREVSAGGCNACEADTNVLSTIGWDLGRFGIQFVASPRHADGLFITGPV 176

Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162
           +  M  AL   Y  +P+P+ VI  G+CA  GG +     V  G D ++ VD+Y+PGCPP+
Sbjct: 177 SENMRLALLDTYAAIPDPKLVIVTGACAINGGPFKDHDEVCNGADGLLAVDLYIPGCPPS 236

Query: 163 AEALIYGILLLQKKIR 178
              ++ G+L L ++IR
Sbjct: 237 PLTILDGLLRLIRRIR 252


>gi|167565804|ref|ZP_02358720.1| putative hydrogenase subunit [Burkholderia oklahomensis EO147]
          Length = 174

 Score =  146 bits (370), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 44/122 (36%), Positives = 66/122 (54%), Gaps = 1/122 (0%)

Query: 50  ARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108
            R   +  +  G    C +E+     P Y++E  G    ASPR +D++++ G LT  M  
Sbjct: 41  GRALCIRAIDVGSCNGCELELHALGNPYYNIEGLGIKFVASPRHADMLLITGPLTLNMRD 100

Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168
           A+R  YD  P P+ V++ G CA  GG +  SY+V    ++ VPVD+ +PGCPP    L+ 
Sbjct: 101 AVRLAYDATPAPKLVVAAGDCACTGGVFADSYAVCGPLEKRVPVDLTIPGCPPRPIDLLC 160

Query: 169 GI 170
           GI
Sbjct: 161 GI 162


>gi|167589517|ref|ZP_02381905.1| Putative hydrogenase/oxidoreductase subunit [Burkholderia ubonensis
           Bu]
          Length = 169

 Score =  146 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 44/123 (35%), Positives = 67/123 (54%), Gaps = 1/123 (0%)

Query: 50  ARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108
            R   +  +  G    C +E+   + P Y++E  G    ASPR +D+++V G +T  M +
Sbjct: 41  GRALCIRQIDAGSCNGCELEIHALNNPVYNIEGLGIKFVASPRHADLLLVTGPVTLNMRA 100

Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168
           A+   YD  P P+ V++ G CA  GG +  SY+V      I+PVD+ +PGCPP    L+ 
Sbjct: 101 AVLAAYDATPSPKLVVAAGECACTGGIFADSYAVCGPVSSILPVDVTIPGCPPPPVDLLR 160

Query: 169 GIL 171
           GIL
Sbjct: 161 GIL 163


>gi|198283919|ref|YP_002220240.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218667213|ref|YP_002426553.1| hydrogenase-4, I subunit [Acidithiobacillus ferrooxidans ATCC
           23270]
 gi|198248440|gb|ACH84033.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218519426|gb|ACK80012.1| hydrogenase-4, I subunit [Acidithiobacillus ferrooxidans ATCC
           23270]
          Length = 165

 Score =  146 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 47/114 (41%), Positives = 70/114 (61%)

Query: 60  FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119
                C +E+     P Y LE+ GF   ASPR +DV+ V G +T  M +AL+  ++  PE
Sbjct: 45  GSCNGCELELNALGGPHYGLEQAGFHFTASPRHADVLTVTGPVTRHMVAALQDCHNATPE 104

Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLL 173
           PR VI++G CA GGG +  SY+V+     ++PVD+ +PGCPP  +AL+ G+L +
Sbjct: 105 PRRVIAVGDCACGGGAFRGSYAVMGSAAEVLPVDLQIPGCPPDPDALLRGLLQV 158


>gi|147920954|ref|YP_685238.1| [NiFe]-hydrogenase, small subunit (EchC-like) [uncultured
           methanogenic archaeon RC-I]
 gi|110620634|emb|CAJ35912.1| [NiFe]-hydrogenase, small subunit (EchC-like) [uncultured
           methanogenic archaeon RC-I]
          Length = 135

 Score =  146 bits (369), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 48/129 (37%), Positives = 72/129 (55%), Gaps = 5/129 (3%)

Query: 52  TGSLMWMT---FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108
             S         G   C +E++ +  PRYDLER G     SPR +DV++V G +      
Sbjct: 5   KRSPWVYHAHAGGCVGCDIELVASMGPRYDLERLGVRLVPSPRYADVLLVTGPVPLHTKP 64

Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHY--SYSVVRGCDRIVPVDIYVPGCPPTAEAL 166
            L RVY Q PEP+ VI++G+C    G +    +YS+    D+I+PVD+ +PGCPP  EA+
Sbjct: 65  FLERVYAQTPEPKRVIAIGACGCSCGVFIDDENYSIAGPVDKIIPVDVKIPGCPPKPEAI 124

Query: 167 IYGILLLQK 175
           + GI+ + +
Sbjct: 125 MEGIIKVLR 133


>gi|296081619|emb|CBI20624.3| unnamed protein product [Vitis vinifera]
          Length = 94

 Score =  146 bits (369), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 76/86 (88%), Positives = 81/86 (94%)

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
           MIVAGTLTNKMA ALR+VYDQMPEPR+V+SMGSCANGGGYYHYSYSVVRGCDRIVPVDIY
Sbjct: 1   MIVAGTLTNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 60

Query: 156 VPGCPPTAEALIYGILLLQKKIRRVG 181
           VPGCPPTAEAL+YG+L LQKKI R  
Sbjct: 61  VPGCPPTAEALLYGLLQLQKKINRRK 86


>gi|320450490|ref|YP_004202586.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, precursor
           [Thermus scotoductus SA-01]
 gi|320150659|gb|ADW22037.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, precursor
           [Thermus scotoductus SA-01]
          Length = 262

 Score =  146 bits (369), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 50/120 (41%), Positives = 77/120 (64%), Gaps = 2/120 (1%)

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           GLA   + +     P  D+ RFGF   ASPR +D ++V G ++  MA ALRR Y+ MPEP
Sbjct: 138 GLADSEIAL--LGNPFNDMGRFGFQVVASPRHADALLVTGPVSRNMAEALRRTYEAMPEP 195

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           + V+++G+ A  GG +  S  V+ G D++VPVD+YVPG PP   A+++G++LL  ++ + 
Sbjct: 196 KGVVAVGNEAISGGVFAGSPQVLSGVDQVVPVDVYVPGDPPRPGAILHGLMLLVGRMTQR 255


>gi|51244894|ref|YP_064778.1| hydrogenase, component I-formate hydrogenlyase subunit 7
           [Desulfotalea psychrophila LSv54]
 gi|50875931|emb|CAG35771.1| related to hydrogenase, component I-formate hydrogenlyase subunit 7
           [Desulfotalea psychrophila LSv54]
          Length = 248

 Score =  146 bits (369), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 41/124 (33%), Positives = 68/124 (54%), Gaps = 1/124 (0%)

Query: 49  WARTGSLMWMT-FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMA 107
           + R+  L  ++  G   C  +    + P +DL RFG    ASPR +D + V G +++ M 
Sbjct: 121 FGRSLQLRQVSAGGCNSCEADTNVLNTPFFDLSRFGIDFVASPRHADGLHVTGPISHNMR 180

Query: 108 SALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALI 167
            AL   Y+ +  P+ VI+ G C+  GG ++ S  VV   + ++PVD+Y+PGCPP     +
Sbjct: 181 QALITTYEAVASPKVVIASGCCSISGGPFYGSSEVVGDLNSLLPVDLYIPGCPPHPLTTL 240

Query: 168 YGIL 171
           + +L
Sbjct: 241 HALL 244


>gi|303325434|ref|ZP_07355877.1| hydrogenase subunit [Desulfovibrio sp. 3_1_syn3]
 gi|302863350|gb|EFL86281.1| hydrogenase subunit [Desulfovibrio sp. 3_1_syn3]
          Length = 271

 Score =  146 bits (369), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 45/120 (37%), Positives = 67/120 (55%), Gaps = 3/120 (2%)

Query: 60  FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119
            G   C  +        YDL RFG    ASPR +D ++V G +T  M  AL   +  MPE
Sbjct: 151 GGCNACEADCNVLGTLVYDLGRFGIEFTASPRHADGLVVTGPVTENMRRALLDTWAAMPE 210

Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCD---RIVPVDIYVPGCPPTAEALIYGILLLQKK 176
           PR ++++G+CA  GG +  S     G D   R+ PVD++VPGCPP   +++ G+L L+++
Sbjct: 211 PRLLVAVGACAISGGLFRESPQCHGGLDGGGRLPPVDVFVPGCPPNPWSILDGLLSLRRR 270


>gi|291615014|ref|YP_003525171.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Sideroxydans
           lithotrophicus ES-1]
 gi|291585126|gb|ADE12784.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Sideroxydans
           lithotrophicus ES-1]
          Length = 171

 Score =  146 bits (369), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 41/124 (33%), Positives = 69/124 (55%), Gaps = 1/124 (0%)

Query: 49  WARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMA 107
           +    ++  +  G    C +E+   +   Y++E  G    ASPR +D+++V G ++  M 
Sbjct: 40  FGGALAIRQVDAGSCNGCELEIHAVNNAYYNIEGMGIKFVASPRHADLLLVTGPVSRHME 99

Query: 108 SALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALI 167
            AL+R YD  P+P+ V+++G CA  GG +  SY+       ++PVD+ V GCPP   A++
Sbjct: 100 IALKRTYDATPDPKLVVAIGDCACDGGIFGESYASCGKVSNVIPVDVVVSGCPPAPTAIL 159

Query: 168 YGIL 171
            GIL
Sbjct: 160 QGIL 163


>gi|320101917|ref|YP_004177508.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Isosphaera pallida
           ATCC 43644]
 gi|319749199|gb|ADV60959.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Isosphaera pallida
           ATCC 43644]
          Length = 257

 Score =  146 bits (369), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 44/135 (32%), Positives = 74/135 (54%), Gaps = 1/135 (0%)

Query: 44  DQLVTWARTGSLMWMT-FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL 102
             L  + R+  L  ++  G   C  ++   +   +DL RFG    ASPR +D +++ G +
Sbjct: 117 KALRLFGRSLKLRQVSAGGCNGCEADVNVLNTVVFDLGRFGIQFVASPRHADGLLITGPV 176

Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162
           T  M  AL + ++ +P P+ VI++G+CA  GG +        G D ++PVD+Y+PGCPP 
Sbjct: 177 TKNMVLALEKSHEAVPAPKIVIAVGACAISGGPFAGHAEQSNGADDVLPVDLYIPGCPPH 236

Query: 163 AEALIYGILLLQKKI 177
              ++ G+L L  K+
Sbjct: 237 PLTILDGLLRLLDKL 251


>gi|206895842|ref|YP_002247251.1| hydrogenase-4 component I [Coprothermobacter proteolyticus DSM
           5265]
 gi|206738459|gb|ACI17537.1| hydrogenase-4 component I [Coprothermobacter proteolyticus DSM
           5265]
          Length = 157

 Score =  146 bits (368), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 48/134 (35%), Positives = 74/134 (55%), Gaps = 5/134 (3%)

Query: 53  GSLMWMT---FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASA 109
            SL            C +E++ A  P+YD ERFG     SPR +D+++  G +T     +
Sbjct: 8   KSLWIYHLNTGSCNGCDIEILAALTPKYDAERFGVKLVGSPRHADIIVATGPVTAVAKES 67

Query: 110 LRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYG 169
           + RV DQ+PEP+ ++ +G C   GG +   YS+    D +VPVD+YV GCPP  E ++ G
Sbjct: 68  VLRVIDQVPEPKAIVVVGVCGITGGVFRGGYSIAGPLDTLVPVDVYVFGCPPKPEGIMVG 127

Query: 170 ILLLQK--KIRRVG 181
           IL   +  +++R G
Sbjct: 128 ILKAAEVLELKRKG 141


>gi|126465960|ref|YP_001041069.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Staphylothermus
           marinus F1]
 gi|126014783|gb|ABN70161.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Staphylothermus
           marinus F1]
          Length = 159

 Score =  146 bits (368), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 49/141 (34%), Positives = 79/141 (56%), Gaps = 13/141 (9%)

Query: 52  TGSLMWMT---FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108
             S+            C +E++ A  P +D+ERFG    ASPR +D++++ G +T K   
Sbjct: 9   KKSIWVFHLNTGSCNACDIEILDALTPYFDVERFGIKLVASPRHADLVLLTGPITLKTLP 68

Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI--------VPVD--IYVPG 158
            +      +P PRYV+++G+CA GGG ++ SYSV+ G D +        + +D  +YVPG
Sbjct: 69  KVINALRAVPRPRYVMAIGACAVGGGIWYDSYSVIGGVDELKKILEEYGIEIDKIVYVPG 128

Query: 159 CPPTAEALIYGILLLQKKIRR 179
           CP   EA+IYG+ LL   +++
Sbjct: 129 CPARPEAIIYGVALLLGLVKQ 149


>gi|5734540|emb|CAB52769.1| hydrogenase small subunit [Methanothermobacter thermautotrophicus]
          Length = 148

 Score =  146 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 45/133 (33%), Positives = 74/133 (55%), Gaps = 4/133 (3%)

Query: 43  VDQLVTWARTGSLMWM---TFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVA 99
           +D L +  R  S+      T G   C +E++    PRYDLE++G     +PR++DV++V 
Sbjct: 2   LDALKSILRKTSIHVCLVNTGGCNGCDIEVLALLSPRYDLEQYGIYVHQNPREADVILVT 61

Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGCDRIVPVDIYVPG 158
           G +T +    L+R+Y + PEP+ V+++G+C   G  ++    SV       +PVD+ VPG
Sbjct: 62  GAVTEQWREKLQRIYSKAPEPKIVVALGNCPISGDVFNQEGGSVYAPVSDFIPVDVEVPG 121

Query: 159 CPPTAEALIYGIL 171
           CPP    ++  IL
Sbjct: 122 CPPRPFEILEAIL 134


>gi|220918887|ref|YP_002494191.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Anaeromyxobacter
           dehalogenans 2CP-1]
 gi|219956741|gb|ACL67125.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Anaeromyxobacter
           dehalogenans 2CP-1]
          Length = 259

 Score =  146 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 46/133 (34%), Positives = 74/133 (55%), Gaps = 4/133 (3%)

Query: 50  ARTGSLMWMT-FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108
            R+  L  ++  G + C  E+  +   ++D+ RFG    ASPR +D +++ G +T  M  
Sbjct: 127 GRSLKLRQVSAGGCSGCEAELNASGNIQFDVGRFGVQFVASPRHADGLVITGPVTENMRL 186

Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCD---RIVPVDIYVPGCPPTAEA 165
           ALR+ ++ +P PR VI++G+CA  GG +  S     G       +PVD+YVPGCPP    
Sbjct: 187 ALRQTWEAVPAPRIVIAVGACAISGGPFAGSPVTCGGAAAALDGIPVDLYVPGCPPHPIT 246

Query: 166 LIYGILLLQKKIR 178
            + GIL L  +++
Sbjct: 247 FLDGILRLLGRLK 259


>gi|238508138|ref|XP_002385270.1| NADH dehydrogenase, putative [Aspergillus flavus NRRL3357]
 gi|220688789|gb|EED45141.1| NADH dehydrogenase, putative [Aspergillus flavus NRRL3357]
          Length = 94

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 66/89 (74%), Positives = 77/89 (86%)

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
           M+VAGT+TNKMA ALR+ YDQMP+P++VISMGSCANGGGYYHYSYSVVRG DRIVPVD+Y
Sbjct: 1   MVVAGTVTNKMAPALRQCYDQMPDPKWVISMGSCANGGGYYHYSYSVVRGVDRIVPVDVY 60

Query: 156 VPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           +PGCPPT EA +YGI  LQKK+R     +
Sbjct: 61  IPGCPPTPEAFLYGIFQLQKKMRHTKVTR 89


>gi|15678425|ref|NP_275540.1| formate hydrogenlyase, subunit 7 [Methanothermobacter
           thermautotrophicus str. Delta H]
 gi|2621459|gb|AAB84903.1| formate hydrogenlyase, subunit 7 [Methanothermobacter
           thermautotrophicus str. Delta H]
          Length = 148

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 45/135 (33%), Positives = 74/135 (54%), Gaps = 4/135 (2%)

Query: 43  VDQLVTWARTGSLMWM---TFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVA 99
           +D L +  R  S+      T G   C +E++    PRYDLE++G     +PR++DV++V 
Sbjct: 2   LDALKSILRKTSIHVCLVNTGGCNGCDIEVLALLSPRYDLEQYGIYVHQNPREADVILVT 61

Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGCDRIVPVDIYVPG 158
           G +T +    L+R+Y + PEP+ V+++G+C   G  ++    SV       +PVD  VPG
Sbjct: 62  GAVTEQWREKLQRIYRKAPEPKIVVALGNCPISGDVFNQEGGSVYAPVSDFIPVDAEVPG 121

Query: 159 CPPTAEALIYGILLL 173
           CPP    ++  IL +
Sbjct: 122 CPPRPSEILEAILAV 136


>gi|251792877|ref|YP_003007603.1| hydrogenase-4 subunit I [Aggregatibacter aphrophilus NJ8700]
 gi|247534270|gb|ACS97516.1| hydrogenase-4 component I [Aggregatibacter aphrophilus NJ8700]
          Length = 258

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 52/150 (34%), Positives = 78/150 (52%), Gaps = 5/150 (3%)

Query: 34  THKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
             +         L    R+  +  +  G    C +E+     P +D ERFG    ASPR 
Sbjct: 18  IDENIAKMKQALLKNIQRSAYVYRVDCGGCNGCEIEIFSTITPVFDAERFGIKVVASPRH 77

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
           +D+++  G++T  M +   R Y   P+P+  I+ G+C  GGG +H  Y V  G D+IVPV
Sbjct: 78  ADILLFTGSVTRAMRTPAMRAYQAAPDPKICIAYGACGCGGGIFHDLYCVWGGSDQIVPV 137

Query: 153 DIYVPGCPPTAEALIYGILL----LQKKIR 178
           D+Y+PGCPPT  A IYG  +    L +K++
Sbjct: 138 DVYIPGCPPTPAATIYGFAMALGLLDQKLK 167


>gi|134045163|ref|YP_001096649.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Methanococcus
           maripaludis C5]
 gi|132662788|gb|ABO34434.1| membrane-bound hydrogenase subunit ehaN [Methanococcus maripaludis
           C5]
          Length = 156

 Score =  145 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 45/152 (29%), Positives = 80/152 (52%), Gaps = 16/152 (10%)

Query: 46  LVTWARTGSL---MWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL 102
           +  + R  S+   +  T G   C +E++    PRYD+E++G     +PR++DV++V G +
Sbjct: 2   IKDFVRKRSINVCLVNTGGCNGCDIEVVSCLAPRYDIEQYGIYVHNNPREADVLVVTGPV 61

Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162
           T      L  +Y++ PEP+ VI++G+CA  GG +   + +    D ++PVD  +PGCPP 
Sbjct: 62  TGAWEKRLLEIYEKTPEPKIVIAVGACALSGGIFKEGH-IHGPVDSVIPVDAKLPGCPPR 120

Query: 163 AEALIYGIL------------LLQKKIRRVGN 182
              +I  ++            LL +K++   N
Sbjct: 121 PSEIISAVVTIAPDALAAKEKLLNQKLKEEKN 152


>gi|159905595|ref|YP_001549257.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanococcus
           maripaludis C6]
 gi|159887088|gb|ABX02025.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanococcus
           maripaludis C6]
          Length = 156

 Score =  145 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 45/152 (29%), Positives = 80/152 (52%), Gaps = 16/152 (10%)

Query: 46  LVTWARTGSL---MWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL 102
           +  + R  S+   +  T G   C +E++    PRYD+E++G     +PR++DV++V G +
Sbjct: 2   IKDFVRKRSINVCLVNTGGCNGCDIEVVSCLAPRYDIEQYGIYVHNNPREADVLVVTGPV 61

Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162
           T      L  +Y++ PEP+ VI++G+CA  GG +   + +    D ++PVD  +PGCPP 
Sbjct: 62  TGAWEKRLLEIYEKTPEPKIVIAVGACALSGGIFKEGH-IHGPVDSVIPVDAKLPGCPPR 120

Query: 163 AEALIYGIL------------LLQKKIRRVGN 182
              +I  ++            LL +K++   N
Sbjct: 121 PSEIISAVVAIAPDALAAKEKLLNQKLKEEKN 152


>gi|313904888|ref|ZP_07838260.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Eubacterium
           cellulosolvens 6]
 gi|313470321|gb|EFR65651.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Eubacterium
           cellulosolvens 6]
          Length = 156

 Score =  145 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 43/132 (32%), Positives = 73/132 (55%), Gaps = 3/132 (2%)

Query: 52  TGSLMWMTF---GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108
             S   + +       C +E++ +  P YD ERFG      P Q+D+ +V G + ++   
Sbjct: 5   KRSPWLLHYDGASCNGCDIEVLASLTPVYDAERFGVENTGDPMQADIFLVTGGINDQCYD 64

Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168
            ++++YDQMP P+ V+++G CA  GG +  +Y +  G D  +PVDIYVPGC    +A+I 
Sbjct: 65  VVKQLYDQMPRPKVVVAVGVCACTGGIFKDAYGIHGGVDTCIPVDIYVPGCAARPQAIID 124

Query: 169 GILLLQKKIRRV 180
           GI+   +  ++ 
Sbjct: 125 GIVKAVELFQKR 136


>gi|197124107|ref|YP_002136058.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Anaeromyxobacter sp.
           K]
 gi|196173956|gb|ACG74929.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Anaeromyxobacter sp.
           K]
          Length = 256

 Score =  145 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 46/133 (34%), Positives = 74/133 (55%), Gaps = 4/133 (3%)

Query: 50  ARTGSLMWMT-FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108
            R+  L  ++  G + C  E+  +   ++D+ RFG    ASPR +D +++ G +T  M  
Sbjct: 124 GRSLKLRQVSAGGCSGCEAELNASGNIQFDVGRFGVQFVASPRHADGLVITGPVTENMRL 183

Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCD---RIVPVDIYVPGCPPTAEA 165
           ALR+ ++ +P PR VI++G+CA  GG +  S     G       +PVD+YVPGCPP    
Sbjct: 184 ALRQTWEAVPAPRIVIAVGACAISGGPFAGSPVTCGGAAAALDGIPVDLYVPGCPPHPIT 243

Query: 166 LIYGILLLQKKIR 178
            + GIL L  +++
Sbjct: 244 FLDGILRLLGRLK 256


>gi|224373087|ref|YP_002607459.1| hydrogenase-4 component I [Nautilia profundicola AmH]
 gi|223589382|gb|ACM93118.1| hydrogenase-4 component I [Nautilia profundicola AmH]
          Length = 142

 Score =  145 bits (365), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 46/131 (35%), Positives = 72/131 (54%), Gaps = 5/131 (3%)

Query: 56  MWMTFGLACCAVEMMQASM-PRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVY 114
              T     C VE+   +M PRYD+ER G     SP+ +D+++V G +T +    L  V 
Sbjct: 12  RINTGSCNGCDVELATTAMIPRYDVERLGCRYTGSPKHADILLVTGPITARSKPYLLEVL 71

Query: 115 DQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLL- 173
           D++P P  V+++G+C    G +  SY++    DR V VD+ VPGCPP  +A+I G+    
Sbjct: 72  DELPNPFVVVAVGTCPTSCGIFRDSYAIEGPLDRYVKVDVNVPGCPPRPQAIIDGVAKAL 131

Query: 174 ---QKKIRRVG 181
              ++KIR + 
Sbjct: 132 EIWKQKIRDMK 142


>gi|218884266|ref|YP_002428648.1| NADH-quinone oxidoreductase, B subunit [Desulfurococcus
           kamchatkensis 1221n]
 gi|218765882|gb|ACL11281.1| NADH-quinone oxidoreductase, B subunit [Desulfurococcus
           kamchatkensis 1221n]
          Length = 337

 Score =  145 bits (365), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 48/138 (34%), Positives = 75/138 (54%)

Query: 43  VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL 102
           ++++  WA   SL  + +  AC AVE     M   D ER+G+ P  SPRQSD+ I  G L
Sbjct: 2   LERIARWAYARSLWMIHYCSACGAVEFPPLVMAPLDWERYGYMPTPSPRQSDLYIGMGYL 61

Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162
           T K    +  +Y QMPEP+ V++  +C + GG Y  SY+  +  D  + V+ +VPGC P 
Sbjct: 62  TKKTVKLVLNMYRQMPEPKLVLAGCNCTSTGGPYWDSYATYKRLDDFIEVEGWVPGCMPM 121

Query: 163 AEALIYGILLLQKKIRRV 180
            +  +  I  ++K + + 
Sbjct: 122 PDDYLSMIEYVRKDLGKR 139


>gi|304314558|ref|YP_003849705.1| energy-converting hydrogenase A, subunit N [Methanothermobacter
           marburgensis str. Marburg]
 gi|302588017|gb|ADL58392.1| energy-converting hydrogenase A, subunit N [Methanothermobacter
           marburgensis str. Marburg]
          Length = 148

 Score =  145 bits (365), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 45/133 (33%), Positives = 73/133 (54%), Gaps = 4/133 (3%)

Query: 43  VDQLVTWARTGSLMWM---TFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVA 99
           +D L +  R  S+      T G   C +E++    PRYDLE++G     +PR++DV++V 
Sbjct: 2   LDALKSILRKTSIHVCLVNTGGCNGCDIEVLALLSPRYDLEQYGIYVHQNPREADVILVT 61

Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGCDRIVPVDIYVPG 158
           G +T +    L+R+Y + PEP+ V+++G+C   G  ++    SV       +PVD  VPG
Sbjct: 62  GAVTEQWREKLQRIYSKAPEPKIVVALGNCPISGDVFNQEGGSVYAPVSDFIPVDAEVPG 121

Query: 159 CPPTAEALIYGIL 171
           CPP    ++  IL
Sbjct: 122 CPPRPSEILEAIL 134


>gi|89902056|ref|YP_524527.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Rhodoferax
           ferrireducens T118]
 gi|89346793|gb|ABD70996.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Rhodoferax
           ferrireducens T118]
          Length = 171

 Score =  144 bits (364), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 40/128 (31%), Positives = 72/128 (56%), Gaps = 1/128 (0%)

Query: 50  ARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108
            ++ ++  +  G    C +E+     P Y++E  G    ASPR +D+++V G ++  M +
Sbjct: 42  GQSLAIRLVDAGSCNGCELEINALGNPYYNIEGLGIKFVASPRHADMLLVTGPVSRNMVT 101

Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168
           AL+R +D +PEP+ V+++G C   GG +  SY+       ++PVD  +PGCPP    ++ 
Sbjct: 102 ALKRTFDAIPEPKLVVAVGDCGCDGGIFGESYASCGRVSNVIPVDWVIPGCPPPPIEILR 161

Query: 169 GILLLQKK 176
           GIL   ++
Sbjct: 162 GILTAVRR 169


>gi|148262959|ref|YP_001229665.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Geobacter
           uraniireducens Rf4]
 gi|146396459|gb|ABQ25092.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Geobacter
           uraniireducens Rf4]
          Length = 263

 Score =  144 bits (364), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 44/124 (35%), Positives = 68/124 (54%), Gaps = 1/124 (0%)

Query: 46  LVTWARTGSLMWMT-FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTN 104
           L  + R+  L  ++  G   C  ++   S   +DL RFG    ASPR +D + V G +T 
Sbjct: 128 LSLFGRSLKLREVSAGGCNACEADVNVLSTVGFDLGRFGIQFVASPRHADGIFVTGPVTE 187

Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164
            M  AL + Y+ +PEP+ VI+ G+CA  GG +  S     G + ++PVD+Y+PGCPP   
Sbjct: 188 NMREALLKTYEAVPEPKIVIASGACAINGGPFIDSSEAHNGVEGLLPVDLYIPGCPPHPI 247

Query: 165 ALIY 168
            ++ 
Sbjct: 248 TILD 251


>gi|224370960|ref|YP_002605124.1| HyfI [Desulfobacterium autotrophicum HRM2]
 gi|223693677|gb|ACN16960.1| HyfI [Desulfobacterium autotrophicum HRM2]
          Length = 258

 Score =  144 bits (364), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 45/118 (38%), Positives = 64/118 (54%)

Query: 60  FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119
            G   C  +        +DL RFG    ASPR +D ++V G +T  M +AL++ YD +P 
Sbjct: 141 GGCNACEADTNVLGTIGWDLARFGIDFVASPRHADGLLVTGPVTRNMETALKKTYDALPS 200

Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
           P+ VI+ G+CA  GG Y        G D I+PVD+Y+PGCPP    ++  +L    KI
Sbjct: 201 PKIVIATGACAISGGPYAGHAQQHNGVDAILPVDLYIPGCPPHPFTILEALLCYLGKI 258


>gi|78043938|ref|YP_360650.1| carbon monoxide-induced hydrogenase subunit CooL [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|77996053|gb|ABB14952.1| carbon monoxide-induced hydrogenase, CooL subunit [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 143

 Score =  144 bits (363), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 43/137 (31%), Positives = 75/137 (54%), Gaps = 4/137 (2%)

Query: 43  VDQLVTWARTGSLMWM---TFGLACCAVEMMQASM-PRYDLERFGFAPRASPRQSDVMIV 98
           + +++      S             C VE+   +  PRYD+ER G     SP+ +D++++
Sbjct: 1   MKKILQKIAKKSPWLYRINAGSCNGCDVELATTACIPRYDVERLGCKYCGSPKHADIVLI 60

Query: 99  AGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPG 158
            G LT ++   + R+Y+++PEP+  +++G C   GG +  SY++    D  +PVD+ VPG
Sbjct: 61  TGPLTARVKEKVLRLYEEIPEPKVTVAIGVCPISGGVFRDSYAITGPIDNFIPVDVNVPG 120

Query: 159 CPPTAEALIYGILLLQK 175
           CPP  +A+I GI+   K
Sbjct: 121 CPPRPQAIIDGIIEAIK 137


>gi|224372780|ref|YP_002607152.1| hydrogenase subunit [Nautilia profundicola AmH]
 gi|223589533|gb|ACM93269.1| hydrogenase subunit [Nautilia profundicola AmH]
          Length = 166

 Score =  144 bits (363), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 43/128 (33%), Positives = 69/128 (53%), Gaps = 4/128 (3%)

Query: 49  WARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMA 107
           +A + ++  +  G    C  E    S P YDLER G    ASPR +DVM ++G +T  M 
Sbjct: 39  FAGSLAIRMVDSGSCNACEAECNALSNPYYDLERLGIHFVASPRHADVMFLSGVMTMNMY 98

Query: 108 SALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALI 167
                 Y+QMP P++VI++G C    G +  +Y++       + +D ++PGCPP+ + +I
Sbjct: 99  HHAIDCYNQMPSPKWVIAIGECVKDMGVFEKTYAIKGND---LKIDYFIPGCPPSPKDII 155

Query: 168 YGILLLQK 175
            G+L   K
Sbjct: 156 KGLLKFLK 163


>gi|150402630|ref|YP_001329924.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanococcus
           maripaludis C7]
 gi|150033660|gb|ABR65773.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanococcus
           maripaludis C7]
          Length = 156

 Score =  143 bits (362), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 44/152 (28%), Positives = 80/152 (52%), Gaps = 16/152 (10%)

Query: 46  LVTWARTGSL---MWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL 102
           +  + R  S+   +  T G   C +E++    P+YD+E++G     +PR++DV++V G +
Sbjct: 2   IKDFVRKRSINVCLVNTGGCNGCDIEVVSCLAPKYDIEQYGIYVHNNPREADVLVVTGPV 61

Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162
           T      L  +Y++ PEP+ VI++G+CA  GG +   + +    D ++PVD  +PGCPP 
Sbjct: 62  TGAWEKRLLEIYEKTPEPKIVIAVGACALSGGIFKEGH-IHGPVDSVIPVDAKLPGCPPR 120

Query: 163 AEALIYGIL------------LLQKKIRRVGN 182
              +I  ++            LL +K++   N
Sbjct: 121 PSEIISAVVAIAPDALAAKEKLLNQKLKEEKN 152


>gi|289641804|ref|ZP_06473961.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Frankia symbiont of
           Datisca glomerata]
 gi|289508329|gb|EFD29271.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Frankia symbiont of
           Datisca glomerata]
          Length = 160

 Score =  143 bits (362), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 45/117 (38%), Positives = 65/117 (55%)

Query: 60  FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119
                C +E+  A  P YD ER+G    ASPR +DV++V G +T  MA  LRR  +  P 
Sbjct: 44  GSCNGCEIEIAAAFGPVYDAERYGARVVASPRHADVLLVTGPVTRNMAEPLRRTVEATPR 103

Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKK 176
           PR VI++G CA   G +   Y V      +VPVD+ VPGCPP  +A++  +  + ++
Sbjct: 104 PRLVIAVGDCALNCGEFAGGYGVQGPVADVVPVDLQVPGCPPEPDAIVAALRTVTRR 160


>gi|114775564|ref|ZP_01451132.1| hydrogenase subunit [Mariprofundus ferrooxydans PV-1]
 gi|114553675|gb|EAU56056.1| hydrogenase subunit [Mariprofundus ferrooxydans PV-1]
          Length = 169

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 42/138 (30%), Positives = 75/138 (54%), Gaps = 4/138 (2%)

Query: 38  FLVTSVDQLVT--WARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSD 94
            +   ++ ++   +A + ++  +  G    C +E+   +   YD+ERFG    ASPR +D
Sbjct: 26  VMGKRLESVIRNHFAGSLTIRAVDAGSCNGCELEIHATNNAYYDIERFGIHFTASPRFAD 85

Query: 95  VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGCDRIVPVD 153
           +++V G ++  M  AL   Y+   +P+ V++MG CA   G +   +Y++      I+PVD
Sbjct: 86  MLLVTGPVSVNMRKALEMTYNATSDPKLVVAMGDCAVNCGVFGRDNYAIAGAVSDIIPVD 145

Query: 154 IYVPGCPPTAEALIYGIL 171
           + + GCPPT   +I GIL
Sbjct: 146 VVIHGCPPTPTDIIRGIL 163


>gi|150399523|ref|YP_001323290.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanococcus
           vannielii SB]
 gi|150012226|gb|ABR54678.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanococcus
           vannielii SB]
          Length = 159

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 43/131 (32%), Positives = 75/131 (57%), Gaps = 4/131 (3%)

Query: 46  LVTWARTGSL---MWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL 102
           +  + R  S+   +  T G   C +E++    PRYD+E++G     +PR++DV++V G +
Sbjct: 5   IKDFVRKRSINVCIVNTGGCNGCDIEIVSTLAPRYDIEQYGIYVHNNPREADVLVVTGPV 64

Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162
           T      L  +Y++ PEP+ V+S+G+CA  GG +   + +    D+I+PVD  +PGCPP 
Sbjct: 65  TGAWEKRLLELYEKTPEPKIVVSIGACALSGGIFKEGH-IFGPVDKIIPVDAKLPGCPPR 123

Query: 163 AEALIYGILLL 173
              +I  I+ +
Sbjct: 124 PSEIISAIVSI 134


>gi|325578545|ref|ZP_08148645.1| hydrogenase-4 component I [Haemophilus parainfluenzae ATCC 33392]
 gi|325159781|gb|EGC71911.1| hydrogenase-4 component I [Haemophilus parainfluenzae ATCC 33392]
          Length = 258

 Score =  143 bits (360), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 53/138 (38%), Positives = 76/138 (55%), Gaps = 5/138 (3%)

Query: 46  LVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTN 104
           L    R+  +  +  G    C +E+     P +D ERFG    ASPR +D+++  G +T 
Sbjct: 30  LKDIQRSAYVYRVDCGGCNGCEIEIFSTITPTFDAERFGIKVVASPRHADILLFTGAVTR 89

Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164
            M +   R Y   P+P+  I+ G+C  GGG +H  Y V  G D+IVPVD+Y+PGCPPT  
Sbjct: 90  AMRTPAMRAYQAAPDPKICIAYGACGCGGGIFHDLYCVWGGSDQIVPVDVYIPGCPPTPA 149

Query: 165 ALIYGIL----LLQKKIR 178
           A IYG      LL +K++
Sbjct: 150 ATIYGFAVALGLLDQKLK 167


>gi|222054796|ref|YP_002537158.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Geobacter sp.
           FRC-32]
 gi|221564085|gb|ACM20057.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Geobacter sp.
           FRC-32]
          Length = 256

 Score =  143 bits (360), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 45/122 (36%), Positives = 66/122 (54%), Gaps = 1/122 (0%)

Query: 46  LVTWARTGSLM-WMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTN 104
           L  + R+  L      G   C  ++   S   +DL RFG    ASPR +D ++V G +T 
Sbjct: 120 LSLFGRSLKLREVCAGGCNACEADVNVLSTVAWDLGRFGIQFVASPRHADGILVTGPVTE 179

Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164
            M  AL + Y+ +P P+ VI+ G+CA  GG +  S  V  G D ++PVD+Y+PGCPP   
Sbjct: 180 NMREALLKTYEAVPAPKIVIASGACAINGGPFMDSPEVHNGVDGLLPVDLYIPGCPPHPF 239

Query: 165 AL 166
            +
Sbjct: 240 TI 241


>gi|301156407|emb|CBW15878.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit
           [Haemophilus parainfluenzae T3T1]
          Length = 258

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 53/138 (38%), Positives = 76/138 (55%), Gaps = 5/138 (3%)

Query: 46  LVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTN 104
           L    R+  +  +  G    C +E+     P +D ERFG    ASPR +D+++  G +T 
Sbjct: 30  LKDIQRSAYVYRVDCGGCNGCEIEIFSTITPTFDAERFGIKVVASPRHADILLFTGAVTR 89

Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164
            M +   R Y   P+P+  I+ G+C  GGG +H  Y V  G D+IVPVD+Y+PGCPPT  
Sbjct: 90  AMRTPAMRAYQAAPDPKICIAYGACGCGGGIFHDLYCVWGGSDQIVPVDVYIPGCPPTPA 149

Query: 165 ALIYGIL----LLQKKIR 178
           A IYG      LL +K++
Sbjct: 150 ATIYGFAVALGLLDQKLK 167


>gi|121534188|ref|ZP_01666013.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Thermosinus
           carboxydivorans Nor1]
 gi|121307291|gb|EAX48208.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Thermosinus
           carboxydivorans Nor1]
          Length = 143

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 42/128 (32%), Positives = 71/128 (55%), Gaps = 4/128 (3%)

Query: 52  TGSLMWM---TFGLACCAVEMMQASM-PRYDLERFGFAPRASPRQSDVMIVAGTLTNKMA 107
             S             C VE+   +  PRYD+ER G     SP+ +D++++ G LT ++ 
Sbjct: 10  KKSPWLYRINAGSCNGCDVELATTACIPRYDVERLGCKYCGSPKHADIVLITGPLTVRVK 69

Query: 108 SALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALI 167
             + R+Y+++P+P+  +++G C   GG +  SY++    D  +PVD+ VPGCPP  +A+I
Sbjct: 70  EKVLRLYEEIPDPKVTVAIGVCPISGGVFRDSYAIAGPIDNFIPVDVNVPGCPPRPQAII 129

Query: 168 YGILLLQK 175
            GI+   K
Sbjct: 130 DGIIEAIK 137


>gi|83592758|ref|YP_426510.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Rhodospirillum
           rubrum ATCC 11170]
 gi|1515468|gb|AAC45118.1| CooL [Rhodospirillum rubrum]
 gi|83575672|gb|ABC22223.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Rhodospirillum
           rubrum ATCC 11170]
          Length = 142

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 46/125 (36%), Positives = 71/125 (56%), Gaps = 4/125 (3%)

Query: 52  TGSLMWM---TFGLACCAVEMMQASM-PRYDLERFGFAPRASPRQSDVMIVAGTLTNKMA 107
             S             C VE+   +  PRYD+ER G     SP+ +D+++V G LT ++ 
Sbjct: 9   KKSPWLYRINAGSCNGCDVELATTACIPRYDVERLGCQYCGSPKHADIVLVTGPLTARVK 68

Query: 108 SALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALI 167
             + RVY+++P+P+  +++G C   GG +  SYS+V   DR +PVD+ VPGCPP  +A+I
Sbjct: 69  DKVLRVYEEIPDPKVTVAIGVCPISGGVFRESYSIVGPIDRYLPVDVNVPGCPPRPQAII 128

Query: 168 YGILL 172
            GI  
Sbjct: 129 EGIAK 133


>gi|225466336|ref|XP_002274046.1| PREDICTED: similar to NADH-plastoquinone oxidoreductase subunit K,
           partial [Vitis vinifera]
          Length = 155

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 50/90 (55%), Positives = 69/90 (76%), Gaps = 1/90 (1%)

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGCDRIV 150
           Q+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++
Sbjct: 1   QADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLI 60

Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           PVD+Y+PGCPP  EA+I  I  L+KKI R 
Sbjct: 61  PVDVYLPGCPPKPEAVIDAITKLRKKISRE 90


>gi|152991860|ref|YP_001357581.1| Ni-Fe hydrogenase, small subunit HycG [Sulfurovum sp. NBC37-1]
 gi|151423721|dbj|BAF71224.1| Ni-Fe hydrogenase, small subunit HycG [Sulfurovum sp. NBC37-1]
          Length = 168

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 45/131 (34%), Positives = 70/131 (53%), Gaps = 1/131 (0%)

Query: 48  TWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKM 106
            +A + ++  +  G    C  E    S P YDLER G    ASPR +DVM++ G +T  M
Sbjct: 38  KFAGSLAIRMVDSGSCNACEAECNALSNPYYDLERLGIYFVASPRHADVMLLNGLMTFNM 97

Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL 166
              +   Y Q+PEP++VI++G+C      +  +++V       +PV  ++PGCPP    +
Sbjct: 98  TPHVLDAYKQIPEPKWVITLGACPVMEAPFEKTFAVKAPAADHLPVAHHIPGCPPEPLEI 157

Query: 167 IYGILLLQKKI 177
           I G+L   KKI
Sbjct: 158 IRGLLEFLKKI 168


>gi|212223420|ref|YP_002306656.1| Hydrogenase 4, component I or formate hydrogen lyase, subunit 7
           [Thermococcus onnurineus NA1]
 gi|212008377|gb|ACJ15759.1| Hydrogenase 4, component I or formate hydrogen lyase, subunit 7
           [Thermococcus onnurineus NA1]
          Length = 266

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 43/152 (28%), Positives = 74/152 (48%), Gaps = 23/152 (15%)

Query: 53  GSLMWMT---FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASA 109
            S+            C +E++    P YD ER G     SPR +D ++V+G LT +   A
Sbjct: 5   KSVWVFHVDSGSCNGCDIEILDVLTPYYDAERLGIKLVPSPRHADALLVSGPLTRQTYYA 64

Query: 110 LRRVYDQM-PEPRYVISMGSCANGGGYYHYSYSVVRGCDRI---------VPV------- 152
           ++  Y+ M P+PR V+++G+CA+ GG ++  Y +                + V       
Sbjct: 65  VKAAYEAMPPKPRIVVAIGTCASSGGIFYNGYPIYNPNPERGSDRLRTGGIEVLLAEYGK 124

Query: 153 --DIYVPGCPPTAEALIYGILLLQK-KIRRVG 181
             D+Y+PGCPP+ E ++YG+  L   K +++ 
Sbjct: 125 KPDMYIPGCPPSPEEILYGLAQLLGLKEKKMK 156


>gi|116191457|ref|XP_001221541.1| hypothetical protein CHGG_05446 [Chaetomium globosum CBS 148.51]
 gi|88181359|gb|EAQ88827.1| hypothetical protein CHGG_05446 [Chaetomium globosum CBS 148.51]
          Length = 189

 Score =  142 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 71/174 (40%), Positives = 87/174 (50%), Gaps = 47/174 (27%)

Query: 7   NQKIISGQSSCSLEKVDADFSRISSEITHKG---FLVTSVDQLVTWARTGSLMWMTFGLA 63
           + +  S      +         +S+E        + ++++D L+ WAR GSL  M+FGLA
Sbjct: 47  STEQTSPARQPRIPPPVRPTLAVSTEKRPNSVTEYALSTLDGLINWARQGSLWPMSFGLA 106

Query: 64  CCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYV 123
           CCA+EMM  SMPRYD +R G   RASPRQSDVMIVAG +                     
Sbjct: 107 CCAIEMMHLSMPRYDNDRQGIIFRASPRQSDVMIVAGGV--------------------- 145

Query: 124 ISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
                                  DRIVPVDIYVPGCPPTAEAL YGI  LQKK+
Sbjct: 146 -----------------------DRIVPVDIYVPGCPPTAEALQYGIFQLQKKM 176


>gi|148260403|ref|YP_001234530.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Acidiphilium
           cryptum JF-5]
 gi|146402084|gb|ABQ30611.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Acidiphilium
           cryptum JF-5]
          Length = 167

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 49/162 (30%), Positives = 83/162 (51%), Gaps = 9/162 (5%)

Query: 5   TVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFG-LA 63
           T+ + +  G  +      DA+ + + +E+            L    R+ ++  +  G   
Sbjct: 4   TLFESLHRGTMTEPAPPRDAETAALVAELDRA--------ALRRLGRSLAIRAVDAGSCN 55

Query: 64  CCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYV 123
            C +E++      YDLERFG    ASPR +DV++V G +T  M++A R  Y+ MP P++V
Sbjct: 56  GCELEIIALGNVLYDLERFGLKLVASPRHADVLLVTGPMTRNMSAATRLAYEAMPAPKFV 115

Query: 124 ISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEA 165
           +++G C   GG +  S   + G   ++PV + +PGCPPT  A
Sbjct: 116 VAVGDCGRDGGVFAASPHCLGGTASVLPVTLTIPGCPPTPAA 157


>gi|320101195|ref|YP_004176787.1| NADH dehydrogenase (ubiquinone) 30 kDa subunit [Desulfurococcus
           mucosus DSM 2162]
 gi|319753547|gb|ADV65305.1| NADH dehydrogenase (ubiquinone) 30 kDa subunit [Desulfurococcus
           mucosus DSM 2162]
          Length = 338

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 51/142 (35%), Positives = 74/142 (52%)

Query: 43  VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL 102
           +++   W+ + SL  + +  AC AVE     M   D ER+G+ P  SPRQSD+ I  G L
Sbjct: 3   LEKAAKWSFSRSLWMIHYCSACGAVEFPPLVMSPLDWERYGYMPTPSPRQSDLYIGMGYL 62

Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162
           T K       +Y QMPEPR V++  +C + GG Y  SY+  +  D  V V+ +VPGC P 
Sbjct: 63  TKKTVKLFLNMYRQMPEPRLVLAGCNCTSTGGLYWDSYATYKRLDDFVEVEGWVPGCMPM 122

Query: 163 AEALIYGILLLQKKIRRVGNVK 184
            +     I  +++ I   G  K
Sbjct: 123 PDDYTAMIEHVRRDIAGRGFEK 144


>gi|303243649|ref|ZP_07329990.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanothermococcus
           okinawensis IH1]
 gi|302485891|gb|EFL48814.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanothermococcus
           okinawensis IH1]
          Length = 155

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 42/131 (32%), Positives = 76/131 (58%), Gaps = 4/131 (3%)

Query: 46  LVTWARTGSL---MWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL 102
           +  + R  S+   +  T G   C +E++    PRYD+E++G     +PR++D+++V G +
Sbjct: 2   IKEFFRKRSINVCIVNTGGCNGCDIELVATLAPRYDIEQYGIHVHNNPREADILVVTGPV 61

Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162
           T    + L+ +Y++ PEP+ VI++G+CA   G +   + V    D+I+PV+  VPGCPP 
Sbjct: 62  TLPWKNRLKEIYEKTPEPKIVIAVGACALSCGIFKEGH-VCGPVDKIIPVNAKVPGCPPR 120

Query: 163 AEALIYGILLL 173
              +I  +L +
Sbjct: 121 PAEIIEAVLKV 131


>gi|303325626|ref|ZP_07356069.1| carbon monoxide-induced hydrogenase, CooL subunit [Desulfovibrio
           sp. 3_1_syn3]
 gi|302863542|gb|EFL86473.1| carbon monoxide-induced hydrogenase, CooL subunit [Desulfovibrio
           sp. 3_1_syn3]
          Length = 149

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 45/137 (32%), Positives = 76/137 (55%), Gaps = 4/137 (2%)

Query: 42  SVDQLVTWARTGSLM---WMTFGLACCAVEMMQASM-PRYDLERFGFAPRASPRQSDVMI 97
           ++D L+      S             C VE+   +  PRYD+ER G     SPR +D+++
Sbjct: 2   ALDNLLKKLSVRSPWLFRINAGSCNGCDVELATTACIPRYDVERLGCKYCGSPRHADIVL 61

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           + G LT ++   + RV+ ++PEP+  +++G C   GG +   YS+    DR +PVD+ VP
Sbjct: 62  ITGPLTTRVRDRVLRVWHEIPEPKVTVAVGICPISGGVFREGYSIEGPIDRYLPVDVNVP 121

Query: 158 GCPPTAEALIYGILLLQ 174
           GCPP  +A++ G++L +
Sbjct: 122 GCPPRPQAILEGVVLAR 138


>gi|220905144|ref|YP_002480456.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
 gi|219869443|gb|ACL49778.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
          Length = 149

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 46/137 (33%), Positives = 77/137 (56%), Gaps = 4/137 (2%)

Query: 42  SVDQLVTWARTGSLM---WMTFGLACCAVEMMQASM-PRYDLERFGFAPRASPRQSDVMI 97
           S+D ++      S             C VE+   +  PRYD+ER G     SPR +D+++
Sbjct: 2   SLDNMLKKLSVRSPWLFRINAGSCNGCDVELATTACIPRYDVERLGCRYCGSPRHADIVL 61

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           + G LT ++   + RV+D++PEP+  +++G C   GG +   YS+    DR +PVD+ VP
Sbjct: 62  ITGPLTTRVRDRVLRVWDEIPEPKVTVAVGICPISGGVFREGYSIEGPIDRYLPVDVNVP 121

Query: 158 GCPPTAEALIYGILLLQ 174
           GCPP  +A++ G++L +
Sbjct: 122 GCPPRPQAILEGVVLAR 138


>gi|261856376|ref|YP_003263659.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Halothiobacillus
           neapolitanus c2]
 gi|261836845|gb|ACX96612.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Halothiobacillus
           neapolitanus c2]
          Length = 274

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 55/158 (34%), Positives = 86/158 (54%), Gaps = 2/158 (1%)

Query: 21  KVDADFSRISSEITHKGFLVTSVDQ-LVTWARTGSLMWMTFG-LACCAVEMMQASMPRYD 78
           +  AD SR++   T    L     + L  + R+  +  +  G    C  E+     P Y+
Sbjct: 105 RDRADLSRLARPATPDKKLEEKWQKSLAGFGRSLHIRHVDAGSCNGCESEISALLNPFYN 164

Query: 79  LERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY 138
           L R G     SPR +D+++V G +T  M   L R ++ MPEPR+V+++G+CA GGG    
Sbjct: 165 LHRLGVFFTPSPRFADLLLVTGPVTEVMREPLLRTFEAMPEPRWVMALGTCATGGGTNGG 224

Query: 139 SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKK 176
            Y+  +G D I+PVDI++PGCPP   A+I  +L+L  +
Sbjct: 225 GYACHQGLDGILPVDIWLPGCPPNPAAIIEALLVLLDR 262


>gi|303247448|ref|ZP_07333720.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfovibrio
           fructosovorans JJ]
 gi|302491144|gb|EFL51036.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfovibrio
           fructosovorans JJ]
          Length = 253

 Score =  141 bits (355), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 47/126 (37%), Positives = 69/126 (54%), Gaps = 1/126 (0%)

Query: 49  WARTGSLMWMT-FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMA 107
           +AR+  L  ++  G   C  ++       YDL RFG    ASPR +D + V G +T  M 
Sbjct: 122 FARSLKLRQVSAGGCNACEADINVLGTVVYDLGRFGIDFVASPRHADGVAVTGPVTENMY 181

Query: 108 SALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALI 167
            A R  +D +P+PR  I++G+CA  GG +  S     G   ++PVD+YVPGCPP    ++
Sbjct: 182 QATRDTFDAVPDPRLAIAVGACAISGGIFAASAETRGGAPGVMPVDLYVPGCPPHPLTIL 241

Query: 168 YGILLL 173
            G+L L
Sbjct: 242 DGLLRL 247


>gi|153006624|ref|YP_001380949.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Anaeromyxobacter sp.
           Fw109-5]
 gi|152030197|gb|ABS27965.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Anaeromyxobacter sp.
           Fw109-5]
          Length = 256

 Score =  140 bits (354), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 48/149 (32%), Positives = 79/149 (53%), Gaps = 6/149 (4%)

Query: 35  HKGFLVTSVDQLVT--WARTGSLMWMTF-GLACCAVEMMQASMPRYDLERFGFAPRASPR 91
            +  L  ++D  +   + R+  L  ++  G   C  E+  A   ++DL RFG    ASPR
Sbjct: 107 DEPVLAAALDAEMRRVFGRSLKLRQVSAAGCNGCEAELNAAGNIQFDLGRFGIQFVASPR 166

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
            +D ++V G ++  M  AL++ Y+ +P PR VI++G+CA  GG +  S     G    +P
Sbjct: 167 HADGIVVTGPVSENMRLALQKTYEAVPAPRLVIAVGACAISGGVFRESPVSCGGAAAALP 226

Query: 152 ---VDIYVPGCPPTAEALIYGILLLQKKI 177
              VD+YVPGCPP     + G+L +  ++
Sbjct: 227 GVRVDLYVPGCPPHPITFLDGMLRMLGRL 255


>gi|167898184|ref|ZP_02485586.1| putative hydrogenase subunit [Burkholderia pseudomallei 7894]
          Length = 158

 Score =  140 bits (354), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 42/118 (35%), Positives = 63/118 (53%), Gaps = 1/118 (0%)

Query: 50  ARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108
            R   +  +  G    C +E+     P Y++E  G    ASPR +D++++ G LT  M  
Sbjct: 41  GRALCIRAIDAGSCNGCELELHALGNPYYNIEGLGIKFVASPRHADMLLITGPLTLNMRD 100

Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL 166
           A+R  YD  P P+ V++ G CA  GG +  SY+V    + +VPVD+ +PGCPP    L
Sbjct: 101 AVRLAYDATPAPKLVVAAGDCACTGGVFAGSYAVCGPIETLVPVDVAIPGCPPRPIEL 158


>gi|212704287|ref|ZP_03312415.1| hypothetical protein DESPIG_02342 [Desulfovibrio piger ATCC 29098]
 gi|212672249|gb|EEB32732.1| hypothetical protein DESPIG_02342 [Desulfovibrio piger ATCC 29098]
          Length = 149

 Score =  140 bits (353), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 45/148 (30%), Positives = 82/148 (55%), Gaps = 5/148 (3%)

Query: 42  SVDQLVTWARTGSLM---WMTFGLACCAVEMMQASM-PRYDLERFGFAPRASPRQSDVMI 97
           S+D ++      S             C VE+   +  PRYD+ER G     SPR +D+++
Sbjct: 2   SLDNMLKKLSVRSPWLFRINAGSCNGCDVELATTACIPRYDVERLGCRYCGSPRHADIVL 61

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
           + G LT ++   +  V++++PEP+  +++G C   GG +   YS+     R +PVD+ VP
Sbjct: 62  ITGPLTTRVRDRVLAVWNEIPEPKITVAVGICPISGGVFREGYSIEGPISRYIPVDVNVP 121

Query: 158 GCPPTAEALIYGILLLQKK-IRRVGNVK 184
           GCPP  +A++ G++L +K  ++++G  +
Sbjct: 122 GCPPRPQAILEGVVLARKMWLKKLGIEE 149


>gi|219670289|ref|YP_002460724.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfitobacterium
           hafniense DCB-2]
 gi|219540549|gb|ACL22288.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfitobacterium
           hafniense DCB-2]
          Length = 155

 Score =  140 bits (353), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 41/124 (33%), Positives = 68/124 (54%), Gaps = 1/124 (0%)

Query: 52  TGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASAL 110
           +  +  +  G    C  EM     P YDL+RFG    ASPR +D+++  G ++  +  A 
Sbjct: 32  SWHIRHLDCGSCNGCDWEMSALLNPIYDLQRFGLDFVASPRHADILMCTGPMSTHLIQAA 91

Query: 111 RRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGI 170
              Y+  P P+ +I++G CA  GG +  +Y+   G   ++PVDI +PGCPP+ + L+  +
Sbjct: 92  LATYEGTPNPKKIIAVGDCALDGGMFKEAYAAHNGVGEVLPVDIKIPGCPPSPDELLKVL 151

Query: 171 LLLQ 174
           L L+
Sbjct: 152 LQLK 155


>gi|302879581|ref|YP_003848145.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Gallionella
           capsiferriformans ES-2]
 gi|302582370|gb|ADL56381.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Gallionella
           capsiferriformans ES-2]
          Length = 171

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 40/125 (32%), Positives = 68/125 (54%), Gaps = 2/125 (1%)

Query: 49  WARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMA 107
           +    S+  +  G    C +E+   +   Y+LE  G    ASPR +D+++V G ++  M 
Sbjct: 40  FGGALSIRLVDAGSCNGCELEIHAVNNAYYNLEGLGIKFVASPRHADMLLVTGPVSRHME 99

Query: 108 SALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGCDRIVPVDIYVPGCPPTAEAL 166
            AL+R Y+  P+P+ V+++G CA  GG +   +Y+       ++ VD+ V GCPPT  A+
Sbjct: 100 VALKRTYEATPDPKLVVAIGECACNGGIFGTDNYASCGNIANVISVDVAVSGCPPTPVAI 159

Query: 167 IYGIL 171
           +  IL
Sbjct: 160 LQAIL 164


>gi|226327309|ref|ZP_03802827.1| hypothetical protein PROPEN_01176 [Proteus penneri ATCC 35198]
 gi|225204527|gb|EEG86881.1| hypothetical protein PROPEN_01176 [Proteus penneri ATCC 35198]
          Length = 172

 Score =  140 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 45/119 (37%), Positives = 67/119 (56%), Gaps = 1/119 (0%)

Query: 46  LVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTN 104
           L    R+  +  +  G    C +E+  A  P +D ERFG    ASPR +D+++  G +T 
Sbjct: 30  LKDIQRSAYVYRVDCGGCNGCEIEIFSAITPVFDAERFGIKVVASPRHADILLFTGAVTR 89

Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTA 163
           +M     R Y+  P+P+  IS G+C  GGG +H  Y V  G + IVP+D+++PGCPP A
Sbjct: 90  QMRVPALRAYESAPDPKICISYGACGCGGGIFHDLYCVWGGSESIVPIDVWIPGCPPNA 148


>gi|256830388|ref|YP_003159116.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfomicrobium
           baculatum DSM 4028]
 gi|256579564|gb|ACU90700.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfomicrobium
           baculatum DSM 4028]
          Length = 263

 Score =  140 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 45/154 (29%), Positives = 79/154 (51%), Gaps = 3/154 (1%)

Query: 29  ISSEITHKGFLVTSVDQLVT--WARTGSLMWMT-FGLACCAVEMMQASMPRYDLERFGFA 85
           +      +  L  ++D+ +     R+  L  ++  G   C  ++       +DL RFG  
Sbjct: 107 LGETGAEELRLAAALDKKMKSLLGRSLRLRQVSAGGCGACEADINVLGTIGWDLGRFGIQ 166

Query: 86  PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRG 145
             ASPR +D +++ G +T  M  AL++ +  +PEPR  I++G+CA  GG +        G
Sbjct: 167 YVASPRHADGVLITGPVTKGMELALQKTWAAVPEPRIAIALGACAISGGPFIGHPQHNGG 226

Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
            D I+P+D+Y+PGCPP    ++ G L L  ++ +
Sbjct: 227 ADPIIPIDLYIPGCPPHPLTILDGFLRLLGRLPK 260


>gi|326403595|ref|YP_004283677.1| putative NADH ubiquinone oxidoreductase [Acidiphilium multivorum
           AIU301]
 gi|325050457|dbj|BAJ80795.1| putative NADH ubiquinone oxidoreductase [Acidiphilium multivorum
           AIU301]
          Length = 167

 Score =  140 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 48/162 (29%), Positives = 83/162 (51%), Gaps = 9/162 (5%)

Query: 5   TVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFG-LA 63
           T+ + +  G  + +    DA+ + + +E+            L    R+ ++  +  G   
Sbjct: 4   TLFESLHRGTMTETAPPRDAETAALVAELDRA--------ALRRLGRSLAIRAVDAGSCN 55

Query: 64  CCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYV 123
            C +E++      YDLERFG    ASPR +DV++  G +T  M++A R  Y+ MP P++V
Sbjct: 56  GCELEIIALGNVLYDLERFGLKLVASPRHADVLLATGPMTRNMSAATRLAYEAMPAPKFV 115

Query: 124 ISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEA 165
           +++G C   GG +  S   + G   ++PV + +PGCPPT  A
Sbjct: 116 VAVGDCGRDGGVFAASPHCLGGTASVLPVTLTIPGCPPTPAA 157


>gi|319957574|ref|YP_004168837.1| NADH ubiquinone oxidoreductase 20 kda subunit [Nitratifractor
           salsuginis DSM 16511]
 gi|319419978|gb|ADV47088.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Nitratifractor
           salsuginis DSM 16511]
          Length = 170

 Score =  140 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 40/132 (30%), Positives = 72/132 (54%), Gaps = 1/132 (0%)

Query: 48  TWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKM 106
            +A + ++  +  G    C  E    S P YDLER G    ASPR +D+M+++G LT  M
Sbjct: 38  KFAGSLAIRMVDSGSCNACEAECNALSNPYYDLERLGIHFVASPRHADLMLLSGVLTFNM 97

Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL 166
              +   ++Q+PEP++ I++G C      + ++++V       +PV  ++PGCPP+ + +
Sbjct: 98  LPHVLDAWEQIPEPKWCITLGDCPAMQAPFEHTFAVTAPASEHLPVAHHIPGCPPSPDRI 157

Query: 167 IYGILLLQKKIR 178
           I G+L   + + 
Sbjct: 158 IEGLLEFLENLE 169


>gi|218888275|ref|YP_002437596.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfovibrio
           vulgaris str. 'Miyazaki F']
 gi|218759229|gb|ACL10128.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfovibrio
           vulgaris str. 'Miyazaki F']
          Length = 146

 Score =  140 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 44/127 (34%), Positives = 71/127 (55%), Gaps = 4/127 (3%)

Query: 53  GSLMWM---TFGLACCAVEMMQASM-PRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108
            S             C VE+   +  PRYD+ER G     SPR +D++++ G LT ++  
Sbjct: 10  RSPWLYRINAGSCNGCDVELATTACIPRYDVERLGCKYCGSPRHADIVLITGPLTARVKD 69

Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168
            + RV+D++PEP+  +++G C   GG +   YS+    DR +PVD+ VPGCPP  +A+I 
Sbjct: 70  KVLRVWDEIPEPKVTVAVGICPVSGGVFRDGYSIEGPIDRYIPVDVNVPGCPPRPQAIIE 129

Query: 169 GILLLQK 175
           G++  + 
Sbjct: 130 GVIKARD 136


>gi|288560655|ref|YP_003424141.1| energy-converting hydrogenase A subunit N EhaN [Methanobrevibacter
           ruminantium M1]
 gi|288543365|gb|ADC47249.1| energy-converting hydrogenase A subunit N EhaN [Methanobrevibacter
           ruminantium M1]
          Length = 153

 Score =  140 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 42/133 (31%), Positives = 70/133 (52%), Gaps = 4/133 (3%)

Query: 43  VDQLVTWARTGSLMWMT---FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVA 99
           + +L    R  S+        G   C VE++    PRYDLE++G     +PR++DV++V 
Sbjct: 2   LKKLKDIVRKSSIHVCIVNCGGCNGCDVELVALLSPRYDLEQYGIYVHNNPREADVLLVT 61

Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGCDRIVPVDIYVPG 158
           G +T +    LRR+Y + PEP+ V+++G+C   G  +      V+      +PVD  +PG
Sbjct: 62  GAVTEQWRDNLRRIYAKAPEPKIVVAVGNCPQSGDVFAQEGGRVLAPVSDFIPVDAAIPG 121

Query: 159 CPPTAEALIYGIL 171
           CPP    ++  +L
Sbjct: 122 CPPRPSEILEAVL 134


>gi|119719099|ref|YP_919594.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Thermofilum pendens
           Hrk 5]
 gi|119524219|gb|ABL77591.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Thermofilum pendens
           Hrk 5]
          Length = 245

 Score =  139 bits (351), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 47/137 (34%), Positives = 82/137 (59%), Gaps = 5/137 (3%)

Query: 51  RTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASA 109
           R+  L+ +  G    C +E+  A  P +D+ER G     SPR +DV++V G +T +    
Sbjct: 15  RSVYLLRVDSGSCNGCDIEVFDALTPYFDVERLGVKLVLSPRMADVILVTGPVTRQFLPV 74

Query: 110 LRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYG 169
           L+  Y+  P+P  V++ G+CA GGG ++ +Y    G D+++PVD+Y+PGCPP   A+++G
Sbjct: 75  LKATYEAAPKPCVVVACGACACGGGIWYDTYGTAGGVDKVIPVDVYIPGCPPRPHAILHG 134

Query: 170 IL----LLQKKIRRVGN 182
           +     +L++K++R   
Sbjct: 135 VAVALDILEQKVKRSET 151


>gi|220904047|ref|YP_002479359.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
 gi|219868346|gb|ACL48681.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
          Length = 254

 Score =  139 bits (351), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 40/115 (34%), Positives = 64/115 (55%)

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           G   C  +        +DL RFG    ASPR +D +++ G ++  M  A    Y+  PEP
Sbjct: 140 GCNACEADCNVLGTLVFDLPRFGIDFVASPRHADGIVLTGPVSENMRLAAIDTYNATPEP 199

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175
           R V+++G+CA  GG +  +     G   I+PVD++VPGCPP    ++ G+L+L++
Sbjct: 200 RLVVAVGACAISGGLFRDAPQCNNGIADILPVDLFVPGCPPNPWTILDGLLMLRE 254


>gi|224099657|ref|XP_002334455.1| predicted protein [Populus trichocarpa]
 gi|222872368|gb|EEF09499.1| predicted protein [Populus trichocarpa]
          Length = 97

 Score =  139 bits (351), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 42/97 (43%), Positives = 65/97 (67%)

Query: 37  GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVM 96
             + T+ + L  W+R  SL  + +G +CC +E       R+D +R+G  PR+SPRQ+D++
Sbjct: 1   SVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLI 60

Query: 97  IVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGG 133
           + AGT+T KMA +L R+Y+QMPE +YVI+MG+C   G
Sbjct: 61  LTAGTVTMKMAPSLVRLYEQMPEQKYVIAMGACTITG 97


>gi|294634805|ref|ZP_06713329.1| hydrogenase-4 component I [Edwardsiella tarda ATCC 23685]
 gi|291091773|gb|EFE24334.1| hydrogenase-4 component I [Edwardsiella tarda ATCC 23685]
          Length = 205

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 48/109 (44%), Positives = 65/109 (59%), Gaps = 4/109 (3%)

Query: 74  MPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGG 133
            P +D ERFG    ASPR +D+++  G +T  M     R Y   P+P+ VIS G+C   G
Sbjct: 1   SPLFDAERFGIKVVASPRHADILLFTGAVTRAMRVPALRAYQSAPDPKIVISYGACGCSG 60

Query: 134 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKKIR 178
           G +H  Y V  G D+IVPVD+Y+PGCPPT  A +YG      LL +K++
Sbjct: 61  GIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAVALGLLDQKLK 109


>gi|118463973|ref|YP_884232.1| hydrogenase-4, I subunit, putative [Mycobacterium avium 104]
 gi|118165260|gb|ABK66157.1| hydrogenase-4, I subunit, putative [Mycobacterium avium 104]
          Length = 135

 Score =  139 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 46/117 (39%), Positives = 60/117 (51%)

Query: 60  FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119
                C VE+  A  P YD ERFG    ASPR +D ++V G +T  M   LR      P+
Sbjct: 19  GSCNGCEVEISGAFGPVYDAERFGARLVASPRHADALLVTGVVTRNMVEPLRNTLAATPQ 78

Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKK 176
           PR VI+ G CA   G +  +Y VV     IVPVD+ V GCPPT   ++  +  +  K
Sbjct: 79  PRVVIACGDCALNRGVFTDAYGVVGAVGEIVPVDVEVAGCPPTPAQIVDALRSVTGK 135


>gi|150400803|ref|YP_001324569.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanococcus
           aeolicus Nankai-3]
 gi|150013506|gb|ABR55957.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanococcus
           aeolicus Nankai-3]
          Length = 153

 Score =  139 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 38/131 (29%), Positives = 73/131 (55%), Gaps = 4/131 (3%)

Query: 46  LVTWARTGSL---MWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL 102
           +  + R  S+   +  T G   C +E++    PRYD+E++G     +PR++D++++ G +
Sbjct: 2   IKEFFRKRSINLCIVNTGGCNGCDIELVSTLAPRYDIEQYGVYVHNNPREADILVITGPV 61

Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162
           T      L  +Y++ PEP+ V+++G+CA  GG +   + +    D+ +PVD  + GCPP 
Sbjct: 62  TLPWKDKLVEIYEKTPEPKIVVAVGACALSGGIFKEGH-IYGPVDKFIPVDAKIVGCPPR 120

Query: 163 AEALIYGILLL 173
              +I  +L +
Sbjct: 121 PSEIIEAVLKV 131


>gi|296166652|ref|ZP_06849078.1| NADH-ubiquinone oxidoreductase [Mycobacterium parascrofulaceum ATCC
           BAA-614]
 gi|295897987|gb|EFG77567.1| NADH-ubiquinone oxidoreductase [Mycobacterium parascrofulaceum ATCC
           BAA-614]
          Length = 159

 Score =  138 bits (349), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 45/117 (38%), Positives = 62/117 (52%)

Query: 60  FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119
                C VE+  A  P YD ERFG    ASPR +D ++V G +T+ MA  LR   +  P 
Sbjct: 43  GSCNGCEVEIAGAFGPVYDAERFGARLVASPRHADALLVTGVVTHNMAGPLRTTIEATPR 102

Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKK 176
           PR VI+ G CA   G +  +Y V      +VPVD+ +PGCPPT   ++  +  +  K
Sbjct: 103 PRRVIACGDCAIDRGVFGDAYGVAGAVGEVVPVDVEIPGCPPTPAQIVAALRSVTGK 159


>gi|315230909|ref|YP_004071345.1| NADH-ubiquinone oxidoreductase subunit B [Thermococcus barophilus
           MP]
 gi|315183937|gb|ADT84122.1| NADH-ubiquinone oxidoreductase chain B [Thermococcus barophilus MP]
          Length = 192

 Score =  138 bits (349), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 42/144 (29%), Positives = 72/144 (50%), Gaps = 14/144 (9%)

Query: 53  GSLMWMT---FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASA 109
            SL            C +E++    P+ D+ERFG     SPR +D +   G +T +    
Sbjct: 4   KSLWVFHLNSGSCNGCDIEILNIFAPKQDVERFGIKLVGSPRHADAIAFTGPVTRECLPK 63

Query: 110 LRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI-----------VPVDIYVPG 158
           +   +  +PEP+ V+++GSCA GGG ++ +Y+V+ G   +            P  IY+PG
Sbjct: 64  VIEAFKAVPEPKIVLAIGSCACGGGIWYDTYAVIGGVKELYKILKEEYGIEPPTTIYIPG 123

Query: 159 CPPTAEALIYGILLLQKKIRRVGN 182
           CPP  EA+IY + + +  +++   
Sbjct: 124 CPPKPEAIIYAVAMARGLVKQKQK 147


>gi|301167470|emb|CBW27053.1| putative NADH-quinone oxidoreductase chain B [Bacteriovorax marinus
           SJ]
          Length = 172

 Score =  138 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 43/139 (30%), Positives = 84/139 (60%), Gaps = 2/139 (1%)

Query: 41  TSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAG 100
           T +++   W  T S +  TF  ACC+ E       +Y  + F F  R   + SD++I++G
Sbjct: 29  TFIERFHNWVNTHSTVPFTFATACCSSEYYSIFDDQYPEDNF-FPERVEAQNSDLLIISG 87

Query: 101 TLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCP 160
           ++  K    L+ +Y +MP+ ++V+ +G+C   GG +  S+++V    + +PVDI++PGCP
Sbjct: 88  SVNLKTYPLLKDIYKEMPKDKWVVVIGACPMSGGPFS-SFNIVPDISKDIPVDIFIPGCP 146

Query: 161 PTAEALIYGILLLQKKIRR 179
           P+ + + +G+ LL++++R+
Sbjct: 147 PSPKEIAHGMSLLKERMRK 165


>gi|283853523|ref|ZP_06370764.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfovibrio sp.
           FW1012B]
 gi|283571104|gb|EFC19123.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfovibrio sp.
           FW1012B]
          Length = 253

 Score =  138 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 44/126 (34%), Positives = 70/126 (55%), Gaps = 1/126 (0%)

Query: 49  WARTGSLMWMT-FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMA 107
           +AR+  L  ++  G   C  ++   +   +DL RFG    ASPR +D + V G +T  M 
Sbjct: 122 FARSLKLRQVSAGGCNACEADLNVLTTVVFDLGRFGIDFVASPRHADGVAVTGPVTVNML 181

Query: 108 SALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALI 167
           +A R  +D +P+PR  I++G+CA  GG +  S     G    +PVD+++PGCPP    ++
Sbjct: 182 AATRATFDAVPDPRVAIAVGACAISGGVFAGSPETTGGATPHLPVDLFIPGCPPHPLTIL 241

Query: 168 YGILLL 173
            G+L L
Sbjct: 242 DGLLSL 247


>gi|148642373|ref|YP_001272886.1| [NiFe]-hydrogenase-3-type complex, small subunit/NADH:quinone
           oxidoreductase (complex I), subunit PSST/NdhK/NuoB
           [Methanobrevibacter smithii ATCC 35061]
 gi|222444424|ref|ZP_03606939.1| hypothetical protein METSMIALI_00035 [Methanobrevibacter smithii
           DSM 2375]
 gi|261351026|ref|ZP_05976443.1| carbon monoxide-induced hydrogenase, CooL subunit
           [Methanobrevibacter smithii DSM 2374]
 gi|148551390|gb|ABQ86518.1| [NiFe]-hydrogenase-3-type complex, small subunit/NADH:quinone
           oxidoreductase (complex I), subunit PSST/NdhK/NuoB
           [Methanobrevibacter smithii ATCC 35061]
 gi|222433989|gb|EEE41154.1| hypothetical protein METSMIALI_00035 [Methanobrevibacter smithii
           DSM 2375]
 gi|288860366|gb|EFC92664.1| carbon monoxide-induced hydrogenase, CooL subunit
           [Methanobrevibacter smithii DSM 2374]
          Length = 149

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 42/135 (31%), Positives = 73/135 (54%), Gaps = 4/135 (2%)

Query: 43  VDQLVTWARTGSLMWMT---FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVA 99
           ++ +    R  S+        G   C VE++  + PRYDLE++G     +PR++DV+++ 
Sbjct: 2   LNAIKDVVRKSSIHVCIVNCGGCNGCDVELVALTSPRYDLEQYGIYVHNNPREADVLLLT 61

Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGCDRIVPVDIYVPG 158
           G +T +    L+RVYD+ PEP+ V+++G+C   G  ++     V       +PVD  +PG
Sbjct: 62  GAVTEQWVDNLKRVYDKAPEPKIVVAVGNCPQSGDVFNQEGGKVYAPASDFIPVDAEIPG 121

Query: 159 CPPTAEALIYGILLL 173
           CPP    ++  IL +
Sbjct: 122 CPPRPSEILEAILAV 136


>gi|262366272|gb|ACY62829.1| NADH dehydrogenase I chain B [Yersinia pestis D182038]
          Length = 145

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 57/102 (55%), Positives = 75/102 (73%), Gaps = 2/102 (1%)

Query: 81  RFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS 139
           RFG    RASPRQ+D M+VAGT   KMA  ++R+Y+QM EP++VISMG+CAN GG Y   
Sbjct: 5   RFGAEVLRASPRQADFMVVAGTCFTKMAPVIQRLYEQMLEPKWVISMGACANSGGMY-DI 63

Query: 140 YSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
           YSVV+G D+ +PVD+Y+PGCPP  EA +  +LLLQ+ I +  
Sbjct: 64  YSVVQGVDKFLPVDVYIPGCPPRPEAYMQALLLLQESIGKER 105


>gi|89895860|ref|YP_519347.1| formate hydrogenlyase subunit 7 [Desulfitobacterium hafniense Y51]
 gi|89335308|dbj|BAE84903.1| formate hydrogenlyase subunit 7 [Desulfitobacterium hafniense Y51]
          Length = 155

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 41/124 (33%), Positives = 67/124 (54%), Gaps = 1/124 (0%)

Query: 52  TGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASAL 110
           +  +  +  G    C  EM     P YDL+RFG    ASPR +D+++  G ++  +  A 
Sbjct: 32  SWHIRHLDCGSCNGCDWEMSALLNPIYDLQRFGLDFVASPRHADILMCTGPMSTHLIQAA 91

Query: 111 RRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGI 170
              Y+  P P+ +I++G CA  GG +  +Y+   G    +PVDI +PGCPP+ + L+  +
Sbjct: 92  LATYEGTPNPKRIIAVGDCALDGGMFKEAYAAHNGVGEALPVDIKIPGCPPSPDELLKVL 151

Query: 171 LLLQ 174
           L L+
Sbjct: 152 LQLK 155


>gi|322420679|ref|YP_004199902.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Geobacter sp. M18]
 gi|320127066|gb|ADW14626.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Geobacter sp. M18]
          Length = 252

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 44/122 (36%), Positives = 64/122 (52%), Gaps = 1/122 (0%)

Query: 46  LVTWARTGSLM-WMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTN 104
           L  + R+      +  G   C  +    S   +D+ RFG    ASPR +D + V G +T 
Sbjct: 119 LALFGRSLKFRSVVAGGCNACEADSNVLSTIGWDIGRFGLQFVASPRHADALWVTGPVTE 178

Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164
            M  AL   YD +P P+ VI+ G+CA  GG +  S +   G DR++PVD+Y+PGCPP   
Sbjct: 179 NMREALMMTYDAIPAPKLVIACGACAINGGPFIGSPAAHDGVDRLLPVDLYIPGCPPHPV 238

Query: 165 AL 166
            +
Sbjct: 239 TI 240


>gi|297567576|ref|YP_003686547.1| hypothetical protein Mesil_3218 [Meiothermus silvanus DSM 9946]
 gi|297567775|ref|YP_003686746.1| hypothetical protein Mesil_3429 [Meiothermus silvanus DSM 9946]
 gi|296852025|gb|ADH65039.1| hypothetical protein Mesil_3218 [Meiothermus silvanus DSM 9946]
 gi|296852224|gb|ADH65238.1| hypothetical protein Mesil_3429 [Meiothermus silvanus DSM 9946]
          Length = 290

 Score =  138 bits (347), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 47/115 (40%), Positives = 74/115 (64%)

Query: 66  AVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVIS 125
             E+  A  P +D+ RFGF+  ASPR +D ++V G ++  M  AL R Y   PEP+ V++
Sbjct: 142 DTEVALAGNPFHDMSRFGFSVVASPRHADALLVTGPVSQNMREALWRTYQATPEPKGVVA 201

Query: 126 MGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           +G+ A GG  +  S +VV G D++VPVD+YVPG P    ++++G+LLL  + ++V
Sbjct: 202 VGNEAIGGEIFAESAAVVGGVDQVVPVDVYVPGSPARPASILHGLLLLSGQTQQV 256


>gi|240169554|ref|ZP_04748213.1| oxidoreductase [Mycobacterium kansasii ATCC 12478]
          Length = 159

 Score =  138 bits (347), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 43/117 (36%), Positives = 63/117 (53%)

Query: 60  FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119
                C VE+  A  P YD ERFG    ASPR +D ++V G +T  MA  LR      P 
Sbjct: 43  GSCNGCEVEISGAFGPVYDAERFGARLVASPRHADALLVTGVVTRNMAQPLRNTLAATPA 102

Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKK 176
           PR VI+ G CA   G +  +Y VV     ++PVD+ +PGCPP+ + ++  +  + ++
Sbjct: 103 PRLVIACGDCALNRGVFGDAYGVVGSVGEVIPVDVEIPGCPPSPDQVVMALRSVTRR 159


>gi|90425976|ref|YP_534346.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Rhodopseudomonas
           palustris BisB18]
 gi|90107990|gb|ABD90027.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Rhodopseudomonas
           palustris BisB18]
          Length = 144

 Score =  138 bits (347), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 44/127 (34%), Positives = 72/127 (56%), Gaps = 4/127 (3%)

Query: 50  ARTGSLMWM---TFGLACCAVEMMQASM-PRYDLERFGFAPRASPRQSDVMIVAGTLTNK 105
           A   S             C VE+   +  PRYD+ER G     SP+ +D++++ G LT +
Sbjct: 9   AAKKSPWLYRINAGSCNGCDVELATTACIPRYDVERLGCQYCGSPKHADIVLITGPLTAR 68

Query: 106 MASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEA 165
           +   + RV+D++P+P+  +++G C   GG +  SY++    DR +PVD+ VPGCPP  +A
Sbjct: 69  VKDRVLRVFDEIPDPKVTVAIGICPISGGVFRESYAIEGPIDRYLPVDVNVPGCPPRPQA 128

Query: 166 LIYGILL 172
           +I GI +
Sbjct: 129 IIEGIAM 135


>gi|212224173|ref|YP_002307409.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit [Thermococcus
           onnurineus NA1]
 gi|212009130|gb|ACJ16512.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit [Thermococcus
           onnurineus NA1]
          Length = 191

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 44/151 (29%), Positives = 74/151 (49%), Gaps = 18/151 (11%)

Query: 52  TGSLMWMT---FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108
             SL            C +E++    PR D+ER G     SPR +D +   G +T +   
Sbjct: 3   KNSLWVFHLNSGSCNGCDIEILNIFAPRNDVERLGIKLVGSPRHADAIAFTGPITRECLP 62

Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI-----------VPVDIYVP 157
            +      +PEP+ V+++G+CA GGG ++ +YSV+ G   +            P  +++P
Sbjct: 63  KVIDALKAVPEPKVVLAIGACACGGGIWYDTYSVIGGVKELYRILKEEYNMEPPATVFIP 122

Query: 158 GCPPTAEALIYGIL----LLQKKIRRVGNVK 184
           GCPP  EA+IYG+     +L+ K ++   V+
Sbjct: 123 GCPPKPEAIIYGVAVASGMLESKQKKTVYVE 153


>gi|148259621|ref|YP_001233748.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Acidiphilium
           cryptum JF-5]
 gi|326402829|ref|YP_004282910.1| putative NADH ubiquinone oxidoreductase [Acidiphilium multivorum
           AIU301]
 gi|146401302|gb|ABQ29829.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Acidiphilium
           cryptum JF-5]
 gi|325049690|dbj|BAJ80028.1| putative NADH ubiquinone oxidoreductase [Acidiphilium multivorum
           AIU301]
          Length = 264

 Score =  137 bits (345), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 46/136 (33%), Positives = 75/136 (55%), Gaps = 3/136 (2%)

Query: 51  RTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASA 109
           R+  +  +  G    C  E+   + P Y+L R G     SPR +D+++V G +T  M   
Sbjct: 126 RSLHVRHVDAGSCNGCESELQALNNPFYNLHRLGIFFTPSPRFADLLLVTGPVTRAMLEP 185

Query: 110 LRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYG 169
           LRR ++ MP PR+V++ G+CA  GG        + G +  +PVD+Y+PGCPP   A+I  
Sbjct: 186 LRRTWEAMPAPRWVMASGTCAVSGGI-APGGPCLSGLEEALPVDLYLPGCPPNPAAIIEA 244

Query: 170 ILL-LQKKIRRVGNVK 184
           +L+ L ++ +RV   +
Sbjct: 245 LLMFLGRRAQRVRGGR 260


>gi|254173900|ref|ZP_04880571.1| hydrogenase-4 component I [Thermococcus sp. AM4]
 gi|214032149|gb|EEB72980.1| hydrogenase-4 component I [Thermococcus sp. AM4]
          Length = 187

 Score =  137 bits (345), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 44/151 (29%), Positives = 75/151 (49%), Gaps = 18/151 (11%)

Query: 52  TGSLMWMT---FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108
             SL            C +E++    PR D+ER G     SPR +D +   G +T +   
Sbjct: 3   KKSLWVFHLNSGSCNGCDIEVLNMFAPRNDVERLGIKLVGSPRHADAIAFTGPITRECLP 62

Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI-----------VPVDIYVP 157
            +      +P+P+ V+++G+CA GGG ++ +YSV+ G   +            P  +++P
Sbjct: 63  KVIDALTAVPDPKVVLAIGACACGGGIWYDTYSVIGGIKELYKILKEEYNIEPPATVFIP 122

Query: 158 GCPPTAEALIYGIL----LLQKKIRRVGNVK 184
           GCPP  EA+IYG+     +L+KK R+   ++
Sbjct: 123 GCPPKPEAIIYGVAVARGMLEKKQRKQVYIE 153


>gi|225164839|ref|ZP_03727063.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Opitutaceae
           bacterium TAV2]
 gi|224800549|gb|EEG18921.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Opitutaceae
           bacterium TAV2]
          Length = 294

 Score =  136 bits (344), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 43/160 (26%), Positives = 79/160 (49%), Gaps = 3/160 (1%)

Query: 10  IISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVT--WARTGSLMWMT-FGLACCA 66
           I+         +   D          +  L  ++D+ +   + R+  L  ++  G   C 
Sbjct: 99  IVQTGDHRMATRQRDDLILAPDPSREQIRLAAALDEKLRKLFGRSLKLRQVSAGGCNACE 158

Query: 67  VEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISM 126
            ++       +DL RFG    ASPR +D +++ G ++  M  AL++ +D +P+P+ VI+ 
Sbjct: 159 ADVNVLGTIGWDLSRFGIQFVASPRHADGLLITGPVSQGMELALKKTWDAVPDPKLVIAT 218

Query: 127 GSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL 166
           G+CA  GG +  +  ++ G   +VPVD+Y+PGCPP    +
Sbjct: 219 GACAISGGPFAGNPQILGGASAVVPVDLYIPGCPPHPLTI 258


>gi|325529420|gb|EGD06341.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Burkholderia sp.
           TJI49]
          Length = 273

 Score =  136 bits (344), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 43/116 (37%), Positives = 63/116 (54%), Gaps = 1/116 (0%)

Query: 49  WARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMA 107
           + R+  +  +  G    C  E+     P Y+L R G     SPR +DV++V G +T  M 
Sbjct: 133 FGRSLHVRHVDAGSCNGCESELQALDNPFYNLHRLGIFFTPSPRFADVLLVTGPVTKAMR 192

Query: 108 SALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTA 163
             L   ++ MP PR+VI+ G+CA  GG    +Y+   G D ++PVDIY+PGCPP  
Sbjct: 193 QPLLETWEAMPSPRWVIATGTCAVSGGMTGGNYACGTGLDGVLPVDIYLPGCPPNP 248


>gi|197119557|ref|YP_002139984.1| Ech-hydrogenase-like complex small subunit [Geobacter bemidjiensis
           Bem]
 gi|197088917|gb|ACH40188.1| Ech-hydrogenase-related complex, small subunit [Geobacter
           bemidjiensis Bem]
          Length = 252

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 46/166 (27%), Positives = 73/166 (43%), Gaps = 9/166 (5%)

Query: 2   GLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLM-WMTF 60
            +T      ++      L     D  R++  +  K         L  + R+      +  
Sbjct: 83  AITHTPDARLAANHREELVVRPGDEHRLAQALEKK--------MLSLFGRSLKFRSVVAG 134

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           G   C  +    S   +DL RFG    ASPR +D + V G +T  M  AL   Y+ +P P
Sbjct: 135 GCNACEADTNVLSTIGWDLGRFGIQFVASPRHADGLWVTGPVTEHMREALLLTYEAIPAP 194

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL 166
           + V++ G+CA  GG +  S     G + ++PVD+Y+PGCPP    +
Sbjct: 195 KLVVACGACAISGGPFRGSPEAHDGVEGMLPVDLYIPGCPPHPVTI 240


>gi|239905427|ref|YP_002952166.1| putative hydrogenase-4 component I [Desulfovibrio magneticus RS-1]
 gi|239795291|dbj|BAH74280.1| putative hydrogenase-4 component I [Desulfovibrio magneticus RS-1]
          Length = 258

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 40/114 (35%), Positives = 59/114 (51%)

Query: 60  FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119
            G   C  +    +   +DL RFG    ASPR +D + V G +T  M  A    +  +P+
Sbjct: 135 GGCNACEADTNVLTTIVFDLGRFGIDFVASPRHADGVAVTGPVTRNMLEATLGTFAAVPD 194

Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLL 173
           PR  I++G+CA  GG +  S     G    +PVD+Y+PGCPP    ++ G+L L
Sbjct: 195 PRVGIAIGTCAISGGLFAGSPETTGGATPHLPVDLYIPGCPPHPLTILDGLLRL 248


>gi|332295482|ref|YP_004437405.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Thermodesulfobium
           narugense DSM 14796]
 gi|332178585|gb|AEE14274.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Thermodesulfobium
           narugense DSM 14796]
          Length = 140

 Score =  136 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 34/130 (26%), Positives = 63/130 (48%), Gaps = 3/130 (2%)

Query: 46  LVTWARTGSLMWMT---FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL 102
           +    R+ S             C +E++     RYD+ER G     SP+ +D+ +V G +
Sbjct: 2   IFKIGRSKSPWIFHLNTGSCNGCDIEIVALFASRYDVERLGCKLVGSPKHADICLVTGPV 61

Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162
           T +    L ++YD +P P+ ++ +G+C+   G +   YS+V    +++PV  YV GC   
Sbjct: 62  TARSKEPLLKIYDMLPNPKVIVCVGACSISSGVFTDGYSIVGPAHKLIPVTAYVGGCSAH 121

Query: 163 AEALIYGILL 172
            + +  G+  
Sbjct: 122 PKNIFLGLKK 131


>gi|261403244|ref|YP_003247468.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanocaldococcus
           vulcanius M7]
 gi|261370237|gb|ACX72986.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanocaldococcus
           vulcanius M7]
          Length = 148

 Score =  136 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 48/143 (33%), Positives = 79/143 (55%), Gaps = 11/143 (7%)

Query: 46  LVTWART---GSLMWMTFGLACCAVEM-MQASMPRYDLERFGFAPRASPRQSDVMIVAGT 101
           L   AR     +++  T G   C +E+      P YD E++      +PR++D++IV G 
Sbjct: 2   LKKIARKKCIHAMLVYTGGCNACDIEVVNAVFSPYYDAEQYNVFLTFNPREADILIVTGC 61

Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-------SYSVVRGCDRIVPVDI 154
           +T  +A +LR++Y+++PEP+ VI++G+CA  GG Y         S  +    + I+PVD+
Sbjct: 62  VTKVVAESLRQIYEKIPEPKAVIAVGACALMGGVYKNIGGDLGTSEFIAGPVENIIPVDV 121

Query: 155 YVPGCPPTAEALIYGILLLQKKI 177
            VPGC P  E +I GI+    K+
Sbjct: 122 KVPGCAPRPEDIISGIVKAIPKV 144


>gi|307721952|ref|YP_003893092.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Sulfurimonas
           autotrophica DSM 16294]
 gi|306980045|gb|ADN10080.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Sulfurimonas
           autotrophica DSM 16294]
          Length = 168

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 39/130 (30%), Positives = 72/130 (55%), Gaps = 1/130 (0%)

Query: 49  WARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMA 107
           +A + ++  +  G    C  E    S P YDLER G    ASPR +DVM+++G +T  M 
Sbjct: 39  FAGSLAIRMVDSGSCNACEAECNALSNPYYDLERLGIYFVASPRHADVMLLSGLMTFNMT 98

Query: 108 SALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALI 167
             +   Y+Q+P+P++VI++G C      +  ++++    ++ + +  ++ GCPP+   ++
Sbjct: 99  PHVLEAYEQIPKPKWVITLGDCPVMAAPFEKTFAIKAPANKHLKITHHITGCPPSPREIM 158

Query: 168 YGILLLQKKI 177
            G+L   KKI
Sbjct: 159 QGLLEFLKKI 168


>gi|224538211|ref|ZP_03678750.1| hypothetical protein BACCELL_03102 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224520179|gb|EEF89284.1| hypothetical protein BACCELL_03102 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 104

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 47/85 (55%), Positives = 68/85 (80%)

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD 153
           D+++V GT+TNKMA  L+R+YDQMP+P+YV+++G CA  GG +  SY VV G D+I+PVD
Sbjct: 1   DMIMVCGTITNKMAPVLKRLYDQMPDPKYVVAVGGCAVSGGPFKKSYHVVNGVDKILPVD 60

Query: 154 IYVPGCPPTAEALIYGILLLQKKIR 178
           +Y+PGCPP  EA  YG++ LQ+K++
Sbjct: 61  VYIPGCPPRPEAFYYGMMQLQRKVK 85


>gi|297620123|ref|YP_003708228.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanococcus voltae
           A3]
 gi|297379100|gb|ADI37255.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanococcus voltae
           A3]
          Length = 153

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 41/131 (31%), Positives = 76/131 (58%), Gaps = 4/131 (3%)

Query: 46  LVTWARTGSL---MWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL 102
           +  +AR  S+   +  T G   C +E++ A  PRYD+E++G     +PR++DV++V G +
Sbjct: 2   IKDFARKRSINVCIVNTGGCNGCDIEVVSALAPRYDIEQYGIYVHNNPREADVLVVTGPV 61

Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162
                  L+ ++D+ PEP+ V+++G+CA   G +   + V    D+I+PV+  +PGCPP 
Sbjct: 62  VLPWKKRLKEIFDKTPEPKVVVAVGACALSCGIFKEGH-VYGPVDKIIPVNAKLPGCPPR 120

Query: 163 AEALIYGILLL 173
              +I  ++ +
Sbjct: 121 PSEIIEAVVSI 131


>gi|218884334|ref|YP_002428716.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Desulfurococcus
           kamchatkensis 1221n]
 gi|218765950|gb|ACL11349.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Desulfurococcus
           kamchatkensis 1221n]
          Length = 156

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 44/141 (31%), Positives = 72/141 (51%), Gaps = 13/141 (9%)

Query: 52  TGSLMWMT---FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108
             S+            C +E++ A  P +D ERFG     SPR +DV+++ G +T +   
Sbjct: 6   KKSIWVFHLNTGSCNACDIEILDALTPFHDAERFGVKLVGSPRHADVILLTGPITIETLP 65

Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGC--------DRIVPVD--IYVPG 158
            +    +  P PR ++++GSC  GGG +H +YS + G         ++ + VD   YVPG
Sbjct: 66  KVINAIEAAPRPRIIVALGSCGVGGGIWHDTYSTIGGVRSLKKILDEKGIQVDGIYYVPG 125

Query: 159 CPPTAEALIYGILLLQKKIRR 179
           CP   EAL+Y I L++  + +
Sbjct: 126 CPIRPEALLYAIALIKGLVSK 146


>gi|296241798|ref|YP_003649285.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Thermosphaera
           aggregans DSM 11486]
 gi|296094382|gb|ADG90333.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Thermosphaera
           aggregans DSM 11486]
          Length = 156

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 46/144 (31%), Positives = 72/144 (50%), Gaps = 17/144 (11%)

Query: 52  TGSLMWMT---FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108
             S+            C +E++    P +D ERFG     SPR +D +++ G +T +   
Sbjct: 6   KKSIWVFHLNTGSCNACDIEILDVLTPFHDAERFGVKLVTSPRHADAILLTGPITAEALP 65

Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGC--------DRIVPVD--IYVPG 158
            +    +  P PR VI++GSC  GGG +H +YS + G         ++ V VD   YVPG
Sbjct: 66  KVINAIEAAPRPRVVIALGSCGVGGGIWHDTYSTIGGIKGLQKILEEKGVKVDAFYYVPG 125

Query: 159 CPPTAEALIYGIL----LLQKKIR 178
           CP   EA++Y +     L+QKK++
Sbjct: 126 CPIRPEAILYAVALFKGLVQKKVK 149


>gi|320100262|ref|YP_004175854.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfurococcus
           mucosus DSM 2162]
 gi|319752614|gb|ADV64372.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfurococcus
           mucosus DSM 2162]
          Length = 152

 Score =  135 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 46/141 (32%), Positives = 72/141 (51%), Gaps = 13/141 (9%)

Query: 52  TGSLMWMT---FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108
             S+            C +E++ A  P +D ERFG     SPR +DV+++ G +T +   
Sbjct: 2   KKSIWVYHLNTGSCNACDIEILDALTPFHDAERFGVKLVGSPRHADVILMTGPVTLETLP 61

Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGC--------DRIVPVD--IYVPG 158
            +    +  P PR +I++GSC  GGG +H +YS + G         +R + VD   YVPG
Sbjct: 62  KVLNAIEAAPRPRIIIALGSCGVGGGIWHDTYSTIGGIKGLEKMLKERGIRVDAIYYVPG 121

Query: 159 CPPTAEALIYGILLLQKKIRR 179
           CP   EAL+Y I L++  + +
Sbjct: 122 CPIRPEALLYAIALIKGLVAK 142


>gi|253699704|ref|YP_003020893.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Geobacter sp. M21]
 gi|251774554|gb|ACT17135.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Geobacter sp. M21]
          Length = 252

 Score =  135 bits (339), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 40/122 (32%), Positives = 62/122 (50%), Gaps = 1/122 (0%)

Query: 46  LVTWARTGSLM-WMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTN 104
           L  + R+      +  G   C  +    S   +D+ RFG    ASPR +D + V G +T 
Sbjct: 119 LSLFGRSLKFRSVVAGGCNACEADTNVLSTIGWDIGRFGIQFVASPRHADGLWVTGPVTE 178

Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164
            M  AL   Y+ +P P+ V++ G+CA  GG +  S     G + ++PVD+Y+PGCPP   
Sbjct: 179 HMREALLMTYEAIPAPKLVVACGACAISGGPFRGSPEAHDGVEGMLPVDLYIPGCPPHPV 238

Query: 165 AL 166
            +
Sbjct: 239 TI 240


>gi|325959025|ref|YP_004290491.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanobacterium sp.
           AL-21]
 gi|325330457|gb|ADZ09519.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanobacterium sp.
           AL-21]
          Length = 149

 Score =  135 bits (339), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 41/135 (30%), Positives = 71/135 (52%), Gaps = 4/135 (2%)

Query: 43  VDQLVTWARTGSLMWM---TFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVA 99
           ++ L    R  S+      T G   C +E++    PRYDLE++G     +PR++DV+++ 
Sbjct: 2   LNGLKDIIRKSSIHVCLVNTGGCNGCDIEVVALLSPRYDLEQYGIYVHNNPREADVLLIT 61

Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGCDRIVPVDIYVPG 158
           G L  +    L+++Y + PEP+ V+++G+C   G  ++    SV       +PVD  V G
Sbjct: 62  GALAEQWKDKLQKIYAKTPEPKVVVAIGNCPLTGDVFNQEGSSVNAPVSDYIPVDAEVSG 121

Query: 159 CPPTAEALIYGILLL 173
           CPP    ++  IL +
Sbjct: 122 CPPRPTEILAAILAV 136


>gi|120602015|ref|YP_966415.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Desulfovibrio
           vulgaris DP4]
 gi|120562244|gb|ABM27988.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Desulfovibrio
           vulgaris DP4]
          Length = 144

 Score =  135 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 42/127 (33%), Positives = 69/127 (54%), Gaps = 4/127 (3%)

Query: 53  GSLMWM---TFGLACCAVEMMQASM-PRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108
            S             C VE+   +  PRYD+ER G     SPR +D++++ G LT ++  
Sbjct: 10  RSPWLYRINAGSCNGCDVELATTACIPRYDVERLGCKYCGSPRHADIVLITGPLTARVKD 69

Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168
            + RV+D++P P+  +++G C   GG +   Y +    DR +P+DI VPGCPP  +A+I 
Sbjct: 70  KVLRVWDEIPAPKITVAVGICPVSGGVFRDGYPIEGPLDRYIPIDINVPGCPPRPQAIIE 129

Query: 169 GILLLQK 175
           G++  + 
Sbjct: 130 GVVKARD 136


>gi|289192361|ref|YP_003458302.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanocaldococcus
           sp. FS406-22]
 gi|288938811|gb|ADC69566.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanocaldococcus
           sp. FS406-22]
          Length = 148

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 48/143 (33%), Positives = 77/143 (53%), Gaps = 11/143 (7%)

Query: 46  LVTWARTGSLMWM---TFGLACCAVEM-MQASMPRYDLERFGFAPRASPRQSDVMIVAGT 101
           L   AR   +  M   T G   C +E+      P YD E++      +PR++D+++V G 
Sbjct: 2   LKKIARKKCIHVMLVYTGGCNACDIEVVNAIFSPFYDAEQYNVFLTFNPREADILVVTGC 61

Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-------SYSVVRGCDRIVPVDI 154
           +T  +A +LR++Y+++PEP+ V+++G+CA  GG Y         S  V    + I+PVD+
Sbjct: 62  VTKVVAESLRKIYEKIPEPKAVVAVGACALMGGVYKNIGGDLGTSDFVAGPVENIIPVDV 121

Query: 155 YVPGCPPTAEALIYGILLLQKKI 177
            VPGC P  E +I GI     K+
Sbjct: 122 KVPGCAPRPEDIIAGIAKAISKV 144


>gi|228903773|ref|ZP_04067890.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
           [Bacillus thuringiensis IBL 4222]
 gi|228924034|ref|ZP_04087310.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
           [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1]
 gi|228942446|ref|ZP_04104983.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
           [Bacillus thuringiensis serovar berliner ATCC 10792]
 gi|228975378|ref|ZP_04135934.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
           [Bacillus thuringiensis serovar thuringiensis str.
           T01001]
 gi|229147840|ref|ZP_04276181.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
           [Bacillus cereus BDRD-ST24]
 gi|229199422|ref|ZP_04326086.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
           [Bacillus cereus m1293]
 gi|228584050|gb|EEK42204.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
           [Bacillus cereus m1293]
 gi|228635490|gb|EEK91979.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
           [Bacillus cereus BDRD-ST24]
 gi|228784360|gb|EEM32383.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
           [Bacillus thuringiensis serovar thuringiensis str.
           T01001]
 gi|228817188|gb|EEM63276.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
           [Bacillus thuringiensis serovar berliner ATCC 10792]
 gi|228835524|gb|EEM80889.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
           [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1]
 gi|228855862|gb|EEN00405.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
           [Bacillus thuringiensis IBL 4222]
          Length = 95

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 55/83 (66%), Positives = 69/83 (83%)

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
           MIV+GT+T KMA  +RR+YDQMPEP++VI+MGSCA  GG Y  SY+VV+G D+IVPVD+Y
Sbjct: 1   MIVSGTVTKKMAPIVRRLYDQMPEPKWVIAMGSCATAGGPYVNSYAVVKGVDQIVPVDVY 60

Query: 156 VPGCPPTAEALIYGILLLQKKIR 178
           +PGCPP   ALIYGI  L++KIR
Sbjct: 61  IPGCPPNPAALIYGINKLKEKIR 83


>gi|46580693|ref|YP_011501.1| hydrogenase subunit CooL [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|46450112|gb|AAS96761.1| hydrogenase, CooL subunit, putative [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|311234412|gb|ADP87266.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfovibrio
           vulgaris RCH1]
          Length = 144

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 42/127 (33%), Positives = 69/127 (54%), Gaps = 4/127 (3%)

Query: 53  GSLMWM---TFGLACCAVEMMQASM-PRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108
            S             C VE+   +  PRYD+ER G     SPR +D++++ G LT ++  
Sbjct: 10  RSPWLYRINAGSCNGCDVELATTACIPRYDVERLGCKYCGSPRHADIVLITGPLTARVKD 69

Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168
            + RV+D++P P+  +++G C   GG +   Y +    DR +P+DI VPGCPP  +A+I 
Sbjct: 70  KVLRVWDEIPAPKITVAVGICPVSGGVFRDGYPIEGPLDRYIPIDINVPGCPPRPQAIIE 129

Query: 169 GILLLQK 175
           G++  + 
Sbjct: 130 GVVKARD 136


>gi|228994019|ref|ZP_04153920.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
           [Bacillus pseudomycoides DSM 12442]
 gi|229000087|ref|ZP_04159657.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
           [Bacillus mycoides Rock3-17]
 gi|228759624|gb|EEM08600.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
           [Bacillus mycoides Rock3-17]
 gi|228765667|gb|EEM14320.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
           [Bacillus pseudomycoides DSM 12442]
          Length = 95

 Score =  134 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 55/83 (66%), Positives = 69/83 (83%)

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
           MIV+GT+T KMA  +RR+YDQMPEP++VI+MGSCA  GG Y  SY+VV+G D+IVPVD+Y
Sbjct: 1   MIVSGTVTKKMAPIVRRLYDQMPEPKWVIAMGSCATAGGPYVNSYAVVKGVDQIVPVDVY 60

Query: 156 VPGCPPTAEALIYGILLLQKKIR 178
           +PGCPP   ALIYGI  L++KIR
Sbjct: 61  IPGCPPNPAALIYGINKLKEKIR 83


>gi|229014468|ref|ZP_04171586.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
           [Bacillus mycoides DSM 2048]
 gi|228746818|gb|EEL96703.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
           [Bacillus mycoides DSM 2048]
          Length = 95

 Score =  134 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 55/83 (66%), Positives = 69/83 (83%)

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
           MIV+GT+T KMA  +RR+YDQMPEP++VI+MGSCA  GG Y  SY+VV+G D+IVPVD+Y
Sbjct: 1   MIVSGTVTKKMAPIVRRLYDQMPEPKWVIAMGSCATAGGPYVNSYAVVKGVDQIVPVDVY 60

Query: 156 VPGCPPTAEALIYGILLLQKKIR 178
           +PGCPP   ALIYGI  L++KIR
Sbjct: 61  IPGCPPNPAALIYGINKLKEKIR 83


>gi|303244684|ref|ZP_07331016.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanothermococcus
           okinawensis IH1]
 gi|302484992|gb|EFL47924.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanothermococcus
           okinawensis IH1]
          Length = 148

 Score =  134 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 46/143 (32%), Positives = 77/143 (53%), Gaps = 11/143 (7%)

Query: 46  LVTWARTGSLMWM---TFGLACCAVEMMQA-SMPRYDLERFGFAPRASPRQSDVMIVAGT 101
           +   AR   +  M   T G   C +E++     P YD E++      +PR++D+++V+G 
Sbjct: 2   VKKHARKKCIHIMVAYTGGCNGCDIEVVNCVLSPFYDAEQYNVLLTWNPREADILVVSGC 61

Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-------SYSVVRGCDRIVPVDI 154
           +T  M   L+++Y+ +PEP+ V+++G CA  GG Y         S  +    + I+PVD+
Sbjct: 62  VTKVMTEPLKKIYEAIPEPKAVVAVGCCALMGGVYGNIGGDLGTSDWIDGPVENIIPVDV 121

Query: 155 YVPGCPPTAEALIYGILLLQKKI 177
            VPGCPP  E +I GI+    K+
Sbjct: 122 KVPGCPPRPEDVIQGIVQALPKV 144


>gi|212704381|ref|ZP_03312509.1| hypothetical protein DESPIG_02436 [Desulfovibrio piger ATCC 29098]
 gi|212672102|gb|EEB32585.1| hypothetical protein DESPIG_02436 [Desulfovibrio piger ATCC 29098]
          Length = 265

 Score =  134 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 39/114 (34%), Positives = 61/114 (53%)

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           G   C  +        YDL +FG    ASPR +D ++V G ++  M  A+   +  +PEP
Sbjct: 146 GCNACEADTNVLGTLVYDLGKFGINFVASPRHADGILVTGPVSRNMREAVLATWAAVPEP 205

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQ 174
           R  I++GSCA  GG +  S     G   +  V ++VPGCPP+  +++ G+L L+
Sbjct: 206 RIAIAVGSCAISGGLFADSDECCGGLPPLCDVQLFVPGCPPSPWSILDGLLRLK 259


>gi|212224722|ref|YP_002307958.1| Hydrogenase 4, component I or formate hydrogen lyase, subunit 7
           [Thermococcus onnurineus NA1]
 gi|212009679|gb|ACJ17061.1| Hydrogenase 4, component I or formate hydrogen lyase, subunit 7
           [Thermococcus onnurineus NA1]
          Length = 273

 Score =  134 bits (337), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 44/157 (28%), Positives = 69/157 (43%), Gaps = 31/157 (19%)

Query: 53  GSLMWMT---FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASA 109
            S+            C +E++    P YD+ERFG     SPR +  ++V+G LT +    
Sbjct: 8   RSIWVFHLNTGSCNGCDIEIIDVLTPFYDVERFGIKLVGSPRHAHALLVSGPLTRQAYYG 67

Query: 110 LRRVYDQM-PEPRYVISMGSCANGGGYYHYSYSVVRGC---------------------- 146
            +     M PEPR ++++G+C   GG ++  Y V R                        
Sbjct: 68  AKETIKAMPPEPRVIVAIGTCTCSGGIFYNGYPVYRRPESGREGSEYPRRGGIAELIADL 127

Query: 147 ----DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
               +++ PV IY+PGCPP  E +IYGI  L   + +
Sbjct: 128 RDEGEKVGPV-IYIPGCPPRPEEIIYGIAQLVGLVEK 163


>gi|159905433|ref|YP_001549095.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanococcus
           maripaludis C6]
 gi|159886926|gb|ABX01863.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanococcus
           maripaludis C6]
          Length = 147

 Score =  134 bits (337), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 50/143 (34%), Positives = 82/143 (57%), Gaps = 11/143 (7%)

Query: 46  LVTWARTGSLMWM---TFGLACCAVEMMQA-SMPRYDLERFGFAPRASPRQSDVMIVAGT 101
           L   +R  ++  M   T G   C +E++     P YD E++      +PR++DV++V G 
Sbjct: 2   LKELSRKKNIHIMLVYTGGCNGCDIEVVNCVLSPFYDAEQYNVFLTWNPREADVLVVTGC 61

Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-------SYSVVRGCDRIVPVDI 154
           +T  ++++L+++YD++PEP+ VI+ G+CA  GG Y+        S  V    + I+PVD+
Sbjct: 62  VTKAVSASLKKIYDEIPEPKAVIAAGACALMGGVYNNIGGDLGTSTFVDGPVENIIPVDM 121

Query: 155 YVPGCPPTAEALIYGILLLQKKI 177
            VPGCPP  E +I GI+    KI
Sbjct: 122 KVPGCPPRPEDIITGIVKALPKI 144


>gi|134046813|ref|YP_001098298.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Methanococcus
           maripaludis C5]
 gi|132664438|gb|ABO36084.1| membrane-bound hydrogenase subunit ehbM [Methanococcus maripaludis
           C5]
          Length = 147

 Score =  134 bits (337), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 49/143 (34%), Positives = 82/143 (57%), Gaps = 11/143 (7%)

Query: 46  LVTWARTGSLMWM---TFGLACCAVEMMQA-SMPRYDLERFGFAPRASPRQSDVMIVAGT 101
           L   +R  ++  M   T G   C +E++     P YD E++      +PR++DV++V G 
Sbjct: 2   LKELSRKKNIHIMLVYTGGCNGCDIEVVNCVLSPFYDAEQYNVFLTWNPREADVLVVTGC 61

Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-------SYSVVRGCDRIVPVDI 154
           +T  ++++L+++YD++PEP+ VI+ G+CA  GG Y+        S  +    + I+PVD+
Sbjct: 62  VTKAVSASLKKIYDEIPEPKAVIAAGACALMGGVYNNIGGDLGTSTFIDGPVENIIPVDM 121

Query: 155 YVPGCPPTAEALIYGILLLQKKI 177
            VPGCPP  E +I GI+    KI
Sbjct: 122 KVPGCPPRPEDIISGIVKALPKI 144


>gi|251772759|gb|EES53321.1| putative hydrogenase-3 subunit (HycG) [Leptospirillum
           ferrodiazotrophum]
          Length = 163

 Score =  133 bits (336), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 42/122 (34%), Positives = 66/122 (54%), Gaps = 1/122 (0%)

Query: 52  TGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASAL 110
           + S+  +  G    C +E+     P   L   GF+  ASPR +D+++V G ++  M  AL
Sbjct: 33  SASIRHVDAGSCNGCELELWALENPVTSLSSLGFSFVASPRHADILLVTGPVSCHMKEAL 92

Query: 111 RRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGI 170
              +  MP P+ V+++G CA  GG +  SY+   G   I+P D+ V GCPP  EA++ G+
Sbjct: 93  ETTHQAMPAPKRVLAVGDCAISGGVFRGSYATHDGLSSILPPDVTVHGCPPPPEAIVEGV 152

Query: 171 LL 172
           L 
Sbjct: 153 LR 154


>gi|15669553|ref|NP_248366.1| formate hydrogenlyase subunit 7 [Methanocaldococcus jannaschii DSM
           2661]
 gi|41018429|sp|Q58758|Y1363_METJA RecName: Full=Uncharacterized protein MJ1363
 gi|1592007|gb|AAB99371.1| formate hydrogenlyase, subunit 7 [Methanocaldococcus jannaschii DSM
           2661]
          Length = 151

 Score =  133 bits (336), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 47/143 (32%), Positives = 78/143 (54%), Gaps = 11/143 (7%)

Query: 46  LVTWARTGSLMWM---TFGLACCAVEM-MQASMPRYDLERFGFAPRASPRQSDVMIVAGT 101
           +   AR   +  M   T G   C +E+      P YD E++      +PR++D+++V G 
Sbjct: 5   IKKIARKKCIHVMLVYTGGCNACDIEVVNAIFSPFYDAEQYNVFLTFNPREADILVVTGC 64

Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-------SYSVVRGCDRIVPVDI 154
           +T  +A +LR++Y+++PEP+ V+++G+CA  GG Y         S  V    + I+PVD+
Sbjct: 65  VTKVVAESLRKIYEKIPEPKAVVAVGACALMGGVYKNIGGDLGTSDFVAGPVENIIPVDV 124

Query: 155 YVPGCPPTAEALIYGILLLQKKI 177
            VPGC P  E +I GI+    K+
Sbjct: 125 KVPGCAPRPEDIIAGIVKALPKV 147


>gi|296136161|ref|YP_003643403.1| hypothetical protein Tint_1703 [Thiomonas intermedia K12]
 gi|295796283|gb|ADG31073.1| hypothetical protein Tint_1703 [Thiomonas intermedia K12]
          Length = 273

 Score =  133 bits (336), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 41/121 (33%), Positives = 65/121 (53%), Gaps = 1/121 (0%)

Query: 44  DQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL 102
             +  + ++  +  +  G    C  E+     P Y+L R G     SPR +D+++V G +
Sbjct: 127 QAMKGFGKSLHIRHVDAGSCNGCESELQALLNPFYNLHRLGVFFTPSPRFADLLLVTGPV 186

Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162
           T  M   L R Y+ MP+PR+V++ G+CA GG      Y+   G D I+PVD+++PGCPP 
Sbjct: 187 TAAMREPLLRTYEAMPQPRWVMAAGTCATGGSTNGGGYACHEGLDGILPVDVWLPGCPPN 246

Query: 163 A 163
            
Sbjct: 247 P 247


>gi|317485983|ref|ZP_07944838.1| NADH ubiquinone oxidoreductase [Bilophila wadsworthia 3_1_6]
 gi|316922756|gb|EFV43987.1| NADH ubiquinone oxidoreductase [Bilophila wadsworthia 3_1_6]
          Length = 144

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 42/125 (33%), Positives = 70/125 (56%), Gaps = 4/125 (3%)

Query: 52  TGSLM---WMTFGLACCAVEMMQASM-PRYDLERFGFAPRASPRQSDVMIVAGTLTNKMA 107
           T S             C VE+   +   RYD+ER G     SPR +D++++ G LT ++ 
Sbjct: 9   TRSPWLFRINAGSCNGCDVELATTACISRYDVERLGCKYCGSPRHADIVLITGPLTARVK 68

Query: 108 SALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALI 167
             + RV++++PEP+  +++G C   GG +   YS+    DR +P+D+ VPGCPP  +A++
Sbjct: 69  DKVLRVWNEIPEPKVTVAVGICPISGGVFREGYSIEGPVDRYLPIDVNVPGCPPRPQAIM 128

Query: 168 YGILL 172
            G+L 
Sbjct: 129 EGVLE 133


>gi|78221590|ref|YP_383337.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Geobacter
           metallireducens GS-15]
 gi|78192845|gb|ABB30612.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Geobacter
           metallireducens GS-15]
          Length = 262

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 41/120 (34%), Positives = 66/120 (55%)

Query: 60  FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119
            G   C  +    S   +DL RFG    ASPR +D + + G +T  M  AL + ++ +PE
Sbjct: 143 GGCNACEADTNVLSTVGFDLGRFGIQFVASPRHADGIFITGPVTENMHLALLKTWEAIPE 202

Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           P+  I+ G+CA  GG +  S  V  G D ++P+D+Y+PGCPP    ++ G+L +  ++  
Sbjct: 203 PKIAIAAGACAINGGPFIDSPDVHNGADGLIPIDLYIPGCPPHPLTILDGLLRILGRLEE 262


>gi|45359185|ref|NP_988742.1| energy conserving hydrogenase B small subunit [Methanococcus
           maripaludis S2]
 gi|45048060|emb|CAF31178.1| energy conserving hydrogenase B small subunit [Methanococcus
           maripaludis S2]
          Length = 147

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 48/143 (33%), Positives = 82/143 (57%), Gaps = 11/143 (7%)

Query: 46  LVTWARTGSLMWM---TFGLACCAVEMMQA-SMPRYDLERFGFAPRASPRQSDVMIVAGT 101
           L   +R  ++  M   T G   C +E++     P YD E++      +PR++DV++V G 
Sbjct: 2   LKELSRKKNIHVMLVYTGGCNGCDIEVVNCVLSPFYDAEQYNVFLTWNPREADVLVVTGC 61

Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-------SYSVVRGCDRIVPVDI 154
           +T  ++++L+++YD++PEP+ V++ G+CA  GG Y+        S  +    + I+PVD+
Sbjct: 62  VTKAVSASLKKIYDEIPEPKAVVAAGACALMGGVYNNIGADLGTSTFIDGPVENIIPVDV 121

Query: 155 YVPGCPPTAEALIYGILLLQKKI 177
            VPGCPP  E +I GI+    KI
Sbjct: 122 KVPGCPPRPEDVITGIVKALPKI 144


>gi|150402793|ref|YP_001330087.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanococcus
           maripaludis C7]
 gi|150033823|gb|ABR65936.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanococcus
           maripaludis C7]
          Length = 147

 Score =  133 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 48/143 (33%), Positives = 81/143 (56%), Gaps = 11/143 (7%)

Query: 46  LVTWARTGSLMWM---TFGLACCAVEMMQA-SMPRYDLERFGFAPRASPRQSDVMIVAGT 101
           L   +R  ++  M   T G   C +E++     P YD E++      +PR++DV++V G 
Sbjct: 2   LKELSRKKNIHVMLVYTGGCNGCDIEVVNCVLSPFYDAEQYNVFLTWNPREADVLVVTGC 61

Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-------SYSVVRGCDRIVPVDI 154
           +T  ++++L+++YD++PEP+ V++ G+CA  GG Y         S  +    + I+PVD+
Sbjct: 62  VTKAVSASLKKIYDEIPEPKAVVAAGACALMGGVYKNIGADLGTSSFIDGPVENIIPVDV 121

Query: 155 YVPGCPPTAEALIYGILLLQKKI 177
            VPGCPP  E +I GI+    KI
Sbjct: 122 KVPGCPPRPEDVITGIVKALPKI 144


>gi|150399680|ref|YP_001323447.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanococcus
           vannielii SB]
 gi|150012383|gb|ABR54835.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanococcus
           vannielii SB]
          Length = 147

 Score =  133 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 47/143 (32%), Positives = 81/143 (56%), Gaps = 11/143 (7%)

Query: 46  LVTWARTGSLMWM---TFGLACCAVEMMQA-SMPRYDLERFGFAPRASPRQSDVMIVAGT 101
           L   +R  ++  M   T G   C +E++     P YD E++      +PR++D+++V G 
Sbjct: 2   LKELSRKKNIHIMLVYTGGCNGCDIEVVNCVLSPFYDAEQYNVFLTWNPREADILVVTGC 61

Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-------SYSVVRGCDRIVPVDI 154
           +T  +  +L+++Y+++P P+ V+S+G+CA  GG Y+        S  V    ++I+PVD+
Sbjct: 62  VTKSVTKSLKKIYEEIPNPKAVVSVGACALMGGVYNNIGADLGTSTFVDGPVEKIIPVDV 121

Query: 155 YVPGCPPTAEALIYGILLLQKKI 177
            VPGCPP  E +I GI+    KI
Sbjct: 122 KVPGCPPRPEDVITGIVKALPKI 144


>gi|119718689|ref|YP_925654.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Nocardioides sp.
           JS614]
 gi|119539350|gb|ABL83967.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Nocardioides sp.
           JS614]
          Length = 162

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 42/114 (36%), Positives = 60/114 (52%)

Query: 60  FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119
                C +E+  A  P YD ER+G    ASPR +DV++V G +T+ M   LRR  +  P 
Sbjct: 46  GSCNGCEIEVGGAFGPVYDAERYGARLVASPRHADVVLVTGVVTHNMLEPLRRTVEATPR 105

Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLL 173
           PR V+++G CA   G +   Y V       V VD+ VPGCPP   A++  +  +
Sbjct: 106 PRLVLAVGDCARNCGAFKGGYGVAGAVHDAVDVDLEVPGCPPEPAAIVDALRRV 159


>gi|2665481|gb|AAB88386.1| formate hydrogenlyase subunit 7 [Methanococcus maripaludis]
          Length = 147

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 49/143 (34%), Positives = 82/143 (57%), Gaps = 11/143 (7%)

Query: 46  LVTWARTGSLMWM---TFGLACCAVEMMQA-SMPRYDLERFGFAPRASPRQSDVMIVAGT 101
           L   +R  ++  M   T G   C +E++     P YD E++      +PR++DV++V G 
Sbjct: 2   LKELSRKKNIHVMLVYTGGCNGCDIEVVNCVLSPFYDAEQYNVFLTWNPREADVLVVTGC 61

Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-------SYSVVRGCDRIVPVDI 154
           +T  ++++L+++YD++PEP+ V++ G+CA  GG Y+        S  +    + I+PVDI
Sbjct: 62  VTKAVSASLKKIYDEIPEPKAVVAAGACALMGGVYNNIGADLGTSTFIDGPVENIIPVDI 121

Query: 155 YVPGCPPTAEALIYGILLLQKKI 177
            VPGCPP  E +I GI+    KI
Sbjct: 122 KVPGCPPRPEDVITGIVKALPKI 144


>gi|150401781|ref|YP_001325547.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanococcus
           aeolicus Nankai-3]
 gi|150014484|gb|ABR56935.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanococcus
           aeolicus Nankai-3]
          Length = 146

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 46/139 (33%), Positives = 74/139 (53%), Gaps = 11/139 (7%)

Query: 50  ARTGSLMWM---TFGLACCAVEMMQA-SMPRYDLERFGFAPRASPRQSDVMIVAGTLTNK 105
           AR  ++  M   T G   C ++++     P YD E++      +PR++D+++V+G +T  
Sbjct: 6   ARKKNIHIMVAYTGGCNGCDIDIVNCVLSPFYDAEQYNVFLTWNPREADILLVSGCVTKV 65

Query: 106 MASALRRVYDQMPEPRYVISMGSCANGGGYYHY-------SYSVVRGCDRIVPVDIYVPG 158
           M   L+ +Y+ +PEP+ V+++G CA  GG Y         S  +      I+PVDI VPG
Sbjct: 66  MTEPLKEIYEAIPEPKAVVAVGCCALMGGVYANIGGDLGTSDFIDGPVKNIIPVDINVPG 125

Query: 159 CPPTAEALIYGILLLQKKI 177
           C P  E +I GI+    KI
Sbjct: 126 CSPRPEDIIQGIVQALPKI 144


>gi|89902050|ref|YP_524521.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Rhodoferax
           ferrireducens T118]
 gi|89346787|gb|ABD70990.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Rhodoferax
           ferrireducens T118]
          Length = 254

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 44/127 (34%), Positives = 71/127 (55%), Gaps = 1/127 (0%)

Query: 48  TWARTGSLMWMT-FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKM 106
            + R+  L  ++  G + C +E+   S   +DL R+G    ASPR +D ++++G +T  M
Sbjct: 123 RFGRSLKLRSVSAGGCSGCEMEINALSNVNFDLGRYGIDIVASPRHADALVLSGPITRNM 182

Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL 166
           A AL+  +D +PEP+ VI++G+CA  GG +  S ++ R         +YVPGCP      
Sbjct: 183 AQALQICWDAIPEPKLVIAVGACAISGGVFADSDALDRQFLDNFKPALYVPGCPAHPLTF 242

Query: 167 IYGILLL 173
           I GI+ L
Sbjct: 243 ISGIMDL 249


>gi|256810104|ref|YP_003127473.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanocaldococcus
           fervens AG86]
 gi|256793304|gb|ACV23973.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanocaldococcus
           fervens AG86]
          Length = 147

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 46/139 (33%), Positives = 77/139 (55%), Gaps = 11/139 (7%)

Query: 50  ARTGSLMWM---TFGLACCAVEM-MQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNK 105
           AR   +  M   T G   C +E+      P YD E++      +PR++D+++V G +T  
Sbjct: 6   ARKKCIHVMLVYTGGCNACDIEVVNAIFSPFYDAEQYNVFLTFNPREADILVVTGCVTKT 65

Query: 106 MASALRRVYDQMPEPRYVISMGSCANGGGYYHY-------SYSVVRGCDRIVPVDIYVPG 158
           +A +L+++Y+++PEP+ V+++G+CA  GG Y         S  V    + I+PVD+ VPG
Sbjct: 66  VAESLKKIYEKIPEPKAVVAVGACALMGGVYKNIGGDLGTSDFVAGPVENIIPVDVKVPG 125

Query: 159 CPPTAEALIYGILLLQKKI 177
           C P  E +I GI+    K+
Sbjct: 126 CAPRPEDIITGIIRALPKV 144


>gi|15679250|ref|NP_276367.1| formate hydrogenlyase, subunit 7 [Methanothermobacter
           thermautotrophicus str. Delta H]
 gi|2622351|gb|AAB85728.1| formate hydrogenlyase, subunit 7 [Methanothermobacter
           thermautotrophicus str. Delta H]
          Length = 148

 Score =  131 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 44/142 (30%), Positives = 75/142 (52%), Gaps = 10/142 (7%)

Query: 46  LVTWARTGSLMWM---TFGLACCAVEM-MQASMPRYDLERFGFAPRASPRQSDVMIVAGT 101
           L +++R  ++  M   T G   C +E+      P+YD E++      +PR++DV+IV G 
Sbjct: 3   LKSFSRARAVHAMLVYTGGCNGCDIEIVNAVFSPKYDAEQYKIFLTWNPREADVLIVTGP 62

Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY------SYSVVRGCDRIVPVDIY 155
           +T +    L+ +Y+ +PEP+ VI+ G+CA  GG Y        S  +    D+++PVD  
Sbjct: 63  VTKQNEEPLKAIYNAIPEPKAVIAAGACALMGGVYKNIHGDIPSEEICGPVDKVIPVDAK 122

Query: 156 VPGCPPTAEALIYGILLLQKKI 177
           VPGC    E ++ G +    K+
Sbjct: 123 VPGCAVRPEDVLAGAVAALPKL 144


>gi|115948823|ref|XP_001196585.1| PREDICTED: similar to mitochondrial complex I subunit NDUFS7,
           partial [Strongylocentrotus purpuratus]
          Length = 82

 Score =  131 bits (329), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 61/76 (80%), Positives = 66/76 (86%)

Query: 53  GSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRR 112
            SL  MTFGLACCAVEMM  + PRYD++RFG   RASPRQSDVMIVAGTLTNKMA ALR+
Sbjct: 7   SSLWPMTFGLACCAVEMMHFAAPRYDMDRFGVVFRASPRQSDVMIVAGTLTNKMAPALRK 66

Query: 113 VYDQMPEPRYVISMGS 128
           VYDQMPEPR+VISMGS
Sbjct: 67  VYDQMPEPRWVISMGS 82


>gi|162453072|ref|YP_001615439.1| NAD-dependent dehydrogenase subunit [Sorangium cellulosum 'So ce
           56']
 gi|161163654|emb|CAN94959.1| NAD-dependent dehydrogenase subunit [Sorangium cellulosum 'So ce
           56']
          Length = 250

 Score =  130 bits (328), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 42/126 (33%), Positives = 71/126 (56%), Gaps = 1/126 (0%)

Query: 49  WARTGSLMWMT-FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMA 107
           + R+  +  ++  G   C +E+   +   +D++RFG    ASPR +D +++ G LT  M 
Sbjct: 121 FGRSLKMRQVSAGGCNACELELNAVTNVNFDVQRFGIEWVASPRHADALVLTGPLTRNMK 180

Query: 108 SALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALI 167
            A++  +D MP+PR+++++G+CA  GG Y  +  V RG    V   +YVPGCPP     +
Sbjct: 181 EAVQLAWDAMPDPRFIVAVGACAISGGLYDGAAGVDRGFLERVGPSLYVPGCPPHPLTFV 240

Query: 168 YGILLL 173
             +L L
Sbjct: 241 NAVLDL 246


>gi|297619767|ref|YP_003707872.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanococcus voltae
           A3]
 gi|297378744|gb|ADI36899.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanococcus voltae
           A3]
          Length = 147

 Score =  130 bits (328), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 46/143 (32%), Positives = 78/143 (54%), Gaps = 11/143 (7%)

Query: 46  LVTWARTGSLMWM---TFGLACCAVEMMQA-SMPRYDLERFGFAPRASPRQSDVMIVAGT 101
           L   +R   +  M   T G   C +E++     P YD E++      +PR++D+++V G 
Sbjct: 2   LKEISRKKCIHVMLVYTGGCNGCDIEVVNCVLSPYYDAEQYNVFLTWNPREADILVVTGC 61

Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-------SYSVVRGCDRIVPVDI 154
           +T  + ++L+++Y++MPEP+ V++ G+CA  GG Y         S  +      I+PVD+
Sbjct: 62  VTKTITASLKKIYEEMPEPKAVVAAGACALMGGVYGNIGADLGTSDFIDGPVKNIIPVDV 121

Query: 155 YVPGCPPTAEALIYGILLLQKKI 177
            VPGCPP  E +I GI+    K+
Sbjct: 122 NVPGCPPRPEDVITGIVKAIPKL 144


>gi|258541876|ref|YP_003187309.1| NADH-ubiquinone oxidoreductase 20 kDa subunit [Acetobacter
           pasteurianus IFO 3283-01]
 gi|256632954|dbj|BAH98929.1| NADH-ubiquinone oxidoreductase 20 kDa subunit [Acetobacter
           pasteurianus IFO 3283-01]
 gi|256636011|dbj|BAI01980.1| NADH-ubiquinone oxidoreductase 20 kDa subunit [Acetobacter
           pasteurianus IFO 3283-03]
 gi|256639066|dbj|BAI05028.1| NADH-ubiquinone oxidoreductase 20 kDa subunit [Acetobacter
           pasteurianus IFO 3283-07]
 gi|256642120|dbj|BAI08075.1| NADH-ubiquinone oxidoreductase 20 kDa subunit [Acetobacter
           pasteurianus IFO 3283-22]
 gi|256645175|dbj|BAI11123.1| NADH-ubiquinone oxidoreductase 20 kDa subunit [Acetobacter
           pasteurianus IFO 3283-26]
 gi|256648230|dbj|BAI14171.1| NADH-ubiquinone oxidoreductase 20 kDa subunit [Acetobacter
           pasteurianus IFO 3283-32]
 gi|256651283|dbj|BAI17217.1| NADH-ubiquinone oxidoreductase 20 kDa subunit [Acetobacter
           pasteurianus IFO 3283-01-42C]
 gi|256654274|dbj|BAI20201.1| NADH-ubiquinone oxidoreductase 20 kDa subunit [Acetobacter
           pasteurianus IFO 3283-12]
          Length = 165

 Score =  130 bits (327), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 44/127 (34%), Positives = 69/127 (54%), Gaps = 6/127 (4%)

Query: 56  MWM------TFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASA 109
             +      T G   C +E+       YD+E  GF    SPR +DV+++ G LT  MA  
Sbjct: 26  WPLLLFHVDTGGCGGCGMELQALRYAPYDMEGAGFGFVTSPRNADVLLITGALTRAMAPV 85

Query: 110 LRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYG 169
           L   +  MP P+ +I++GSCA  GG +  +Y+V+ G +R V +D+ +PGCPP  + ++ G
Sbjct: 86  LEAAWQAMPTPKGLIAVGSCALDGGMFPENYTVLGGLERRVSIDLKIPGCPPAPQDVLNG 145

Query: 170 ILLLQKK 176
           +  L  K
Sbjct: 146 LCSLFGK 152


>gi|329114352|ref|ZP_08243114.1| Formate hydrogenlyase subunit 7 [Acetobacter pomorum DM001]
 gi|326696428|gb|EGE48107.1| Formate hydrogenlyase subunit 7 [Acetobacter pomorum DM001]
          Length = 165

 Score =  130 bits (327), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 44/127 (34%), Positives = 69/127 (54%), Gaps = 6/127 (4%)

Query: 56  MWM------TFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASA 109
             +      T G   C +E+       YD+E  GF    SPR +DV+++ G LT  MA  
Sbjct: 26  WPLLLFHVDTGGCGGCGMELQALRYAPYDMEGAGFGFVTSPRNADVLLITGALTRAMAPV 85

Query: 110 LRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYG 169
           L   +  MP P+ +I++GSCA  GG +  +Y+V+ G +R V +D+ +PGCPP  + ++ G
Sbjct: 86  LEAAWQAMPTPKGLIAVGSCALDGGMFPENYTVLGGLERRVSIDLKIPGCPPAPQDVLNG 145

Query: 170 ILLLQKK 176
           +  L  K
Sbjct: 146 LCSLFGK 152


>gi|254496122|ref|ZP_05109021.1| NADH dehydrogenase I, truncated B subunit [Legionella drancourtii
           LLAP12]
 gi|254354663|gb|EET13299.1| NADH dehydrogenase I, truncated B subunit [Legionella drancourtii
           LLAP12]
          Length = 80

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 65/79 (82%), Positives = 73/79 (92%)

Query: 106 MASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEA 165
           MA ALR+VYDQMPEPR+V+SMGSCANGGGYYHYSYSVVRGCDRIVPVD+YVPGCPPTAEA
Sbjct: 1   MAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEA 60

Query: 166 LIYGILLLQKKIRRVGNVK 184
           L+YGI+ LQ KIRR   ++
Sbjct: 61  LLYGIIQLQNKIRRKNILE 79


>gi|221041900|dbj|BAH12627.1| unnamed protein product [Homo sapiens]
          Length = 148

 Score =  130 bits (326), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 57/108 (52%), Positives = 70/108 (64%)

Query: 6   VNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACC 65
           V+Q +     S +   +    +      +   ++V  +D LV WAR  SL  MTFGLACC
Sbjct: 30  VHQSVAIDGPSSTQPALPKARAVAPKPSSRGEYVVAKLDDLVNWARRSSLWPMTFGLACC 89

Query: 66  AVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRV 113
           AVEMM  + PRYD++RFG   RASPRQSDVMIVAGTLTNKMA ALR+V
Sbjct: 90  AVEMMHMAAPRYDMDRFGVVFRASPRQSDVMIVAGTLTNKMAPALRKV 137


>gi|124515569|gb|EAY57079.1| putative hydrogenase-3 (HycG) [Leptospirillum rubarum]
 gi|206601799|gb|EDZ38282.1| Putative NADH ubiquinone oxidoreductase, 20 kDa subunit
           [Leptospirillum sp. Group II '5-way CG']
          Length = 169

 Score =  129 bits (325), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 37/127 (29%), Positives = 64/127 (50%), Gaps = 1/127 (0%)

Query: 50  ARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108
             + S+  +  G    C +E+   +   Y  ER G    ASPR +D+++V G ++ +M  
Sbjct: 33  GGSLSIRHVDAGSCNACELELHAMNGSYYAPERDGIRFVASPRHADLLLVTGPVSCQMEQ 92

Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168
            L   ++ M  P+ V+++G CA  GG +  S +V  G D + P    VPGCPP+   ++ 
Sbjct: 93  PLLDTHEAMASPKTVLAVGDCACQGGVFRGSPAVRNGVDGLFPEARKVPGCPPSPSDILR 152

Query: 169 GILLLQK 175
            +  L +
Sbjct: 153 ALRGLSR 159


>gi|115691401|ref|XP_794478.2| PREDICTED: similar to mitochondrial complex I subunit NDUFS7,
           partial [Strongylocentrotus purpuratus]
          Length = 81

 Score =  129 bits (325), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 60/75 (80%), Positives = 65/75 (86%)

Query: 53  GSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRR 112
            SL  MTFGLACCAVEMM  + PRYD++RFG   RASPRQSDVMIVAGTLTNKMA ALR+
Sbjct: 7   SSLWPMTFGLACCAVEMMHFAAPRYDMDRFGVVFRASPRQSDVMIVAGTLTNKMAPALRK 66

Query: 113 VYDQMPEPRYVISMG 127
           VYDQMPEPR+VISMG
Sbjct: 67  VYDQMPEPRWVISMG 81


>gi|296109474|ref|YP_003616423.1| hypothetical protein Metin_0794 [Methanocaldococcus infernus ME]
 gi|295434288|gb|ADG13459.1| hypothetical protein Metin_0794 [Methanocaldococcus infernus ME]
          Length = 154

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 44/126 (34%), Positives = 73/126 (57%), Gaps = 8/126 (6%)

Query: 55  LMWMTFGLACCAVE-MMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRV 113
           ++  T G   C +E +     P YD E++      +PR++D++IV+G +T  +  +LR++
Sbjct: 21  MLVYTGGCNGCDIEAVNAVFSPYYDAEQYNVFLTFNPRETDILIVSGCVTKFVKESLRKI 80

Query: 114 YDQMPEPRYVISMGSCANGGGYYHY-------SYSVVRGCDRIVPVDIYVPGCPPTAEAL 166
           Y+++PEP+ V+++GSCA  GG Y         S  V    + I+PVD+ VPGC P  E +
Sbjct: 81  YEKIPEPKAVVAIGSCALTGGVYKNIGGDLGTSDFVAGPVENIIPVDVKVPGCAPRPEDI 140

Query: 167 IYGILL 172
           I GI+ 
Sbjct: 141 ISGIVK 146


>gi|304315372|ref|YP_003850519.1| energy-converting hydrogenase B, subunit M [Methanothermobacter
           marburgensis str. Marburg]
 gi|5734564|emb|CAB52790.1| hydrogenase small subunit [Methanothermobacter thermautotrophicus]
 gi|302588831|gb|ADL59206.1| energy-converting hydrogenase B, subunit M [Methanothermobacter
           marburgensis str. Marburg]
          Length = 148

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 44/142 (30%), Positives = 75/142 (52%), Gaps = 10/142 (7%)

Query: 46  LVTWARTGSLMWM---TFGLACCAVEM-MQASMPRYDLERFGFAPRASPRQSDVMIVAGT 101
           L +++R  ++  M   T G   C +E+      P+YD E++      +PR++DV+IV G 
Sbjct: 3   LKSFSRARAVHAMLVYTGGCNGCDIEIVNAVLSPKYDAEQYKIFLTWNPREADVLIVTGP 62

Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY------SYSVVRGCDRIVPVDIY 155
           +T +    L+ +Y+ +PEP+ VI+ G+CA  GG Y        S  +    D+++PVD  
Sbjct: 63  VTKQNEGPLKEIYNAIPEPKAVIAAGACALMGGVYKNIHGDIPSEEICGPVDKVIPVDAK 122

Query: 156 VPGCPPTAEALIYGILLLQKKI 177
           VPGC    E ++ G +    K+
Sbjct: 123 VPGCAVRPEDVLAGAVAALPKL 144


>gi|15607224|ref|NP_214596.1| oxidoreductase [Mycobacterium tuberculosis H37Rv]
 gi|2808739|emb|CAA16263.1| PROBABLE OXIDOREDUCTASE [Mycobacterium tuberculosis H37Rv]
          Length = 159

 Score =  128 bits (322), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 45/117 (38%), Positives = 64/117 (54%)

Query: 60  FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119
                C VE+  A  P YD ERFG    ASP+ +D ++V G +T+ MA  LR+  +  P 
Sbjct: 43  GSCNGCEVEISGAFGPVYDAERFGARLVASPQHADALLVTGVVTHNMAGPLRKTLEATPR 102

Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKK 176
           PR VI+ G CA   G +  +Y VV     +VPVD+ + GCPPT  A++  +  +  K
Sbjct: 103 PRVVIACGDCALNRGVFADAYGVVGAVGEVVPVDVEIAGCPPTPAAIMAALRSVTGK 159


>gi|296532565|ref|ZP_06895272.1| NADH-quinone oxidoreductase subunit B [Roseomonas cervicalis ATCC
           49957]
 gi|296267104|gb|EFH13022.1| NADH-quinone oxidoreductase subunit B [Roseomonas cervicalis ATCC
           49957]
          Length = 167

 Score =  128 bits (322), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 44/115 (38%), Positives = 69/115 (60%), Gaps = 1/115 (0%)

Query: 50  ARTGSLMWMT-FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108
            R+ +++ +   G   CA+E+       +DLERFG    ASPR +DV++V+G +T  M  
Sbjct: 6   GRSLAILPVQAGGCQGCALEIAALRGVVHDLERFGLRFVASPRHADVLLVSGPMTRTMTE 65

Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTA 163
           A +R +  M EP +V+++G CA GGG +  +Y+V  G    +PVD+ +PGCPP  
Sbjct: 66  AAQRAHACMAEPGWVVAVGDCALGGGVFAGAYAVEEGVGAALPVDLVIPGCPPGP 120


>gi|15839463|ref|NP_334500.1| NADH-ubiquinone oxidoreductase, 20 Kd subunit [Mycobacterium
           tuberculosis CDC1551]
 gi|31791260|ref|NP_853753.1| oxidoreductase [Mycobacterium bovis AF2122/97]
 gi|121635995|ref|YP_976218.1| putative oxidoreductase [Mycobacterium bovis BCG str. Pasteur
           1173P2]
 gi|148659844|ref|YP_001281367.1| putative oxidoreductase [Mycobacterium tuberculosis H37Ra]
 gi|148821274|ref|YP_001286028.1| oxidoreductase [Mycobacterium tuberculosis F11]
 gi|167970613|ref|ZP_02552890.1| hypothetical oxidoreductase [Mycobacterium tuberculosis H37Ra]
 gi|215406072|ref|ZP_03418253.1| oxidoreductase [Mycobacterium tuberculosis 02_1987]
 gi|215425279|ref|ZP_03423198.1| oxidoreductase [Mycobacterium tuberculosis T92]
 gi|215432997|ref|ZP_03430916.1| oxidoreductase [Mycobacterium tuberculosis EAS054]
 gi|215448360|ref|ZP_03435112.1| oxidoreductase [Mycobacterium tuberculosis T85]
 gi|218755809|ref|ZP_03534605.1| oxidoreductase [Mycobacterium tuberculosis GM 1503]
 gi|219555867|ref|ZP_03534943.1| oxidoreductase [Mycobacterium tuberculosis T17]
 gi|224988468|ref|YP_002643155.1| putative oxidoreductase [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253797000|ref|YP_003030001.1| oxidoreductase [Mycobacterium tuberculosis KZN 1435]
 gi|254233481|ref|ZP_04926807.1| hypothetical protein TBCG_00083 [Mycobacterium tuberculosis C]
 gi|254366540|ref|ZP_04982584.1| hypothetical oxidoreductase [Mycobacterium tuberculosis str.
           Haarlem]
 gi|254549015|ref|ZP_05139462.1| oxidoreductase [Mycobacterium tuberculosis '98-R604 INH-RIF-EM']
 gi|260184939|ref|ZP_05762413.1| oxidoreductase [Mycobacterium tuberculosis CPHL_A]
 gi|260199078|ref|ZP_05766569.1| oxidoreductase [Mycobacterium tuberculosis T46]
 gi|260203226|ref|ZP_05770717.1| oxidoreductase [Mycobacterium tuberculosis K85]
 gi|289441451|ref|ZP_06431195.1| oxidoreductase [Mycobacterium tuberculosis T46]
 gi|289445612|ref|ZP_06435356.1| oxidoreductase [Mycobacterium tuberculosis CPHL_A]
 gi|289552333|ref|ZP_06441543.1| oxidoreductase [Mycobacterium tuberculosis KZN 605]
 gi|289567972|ref|ZP_06448199.1| oxidoreductase [Mycobacterium tuberculosis T17]
 gi|289572662|ref|ZP_06452889.1| oxidoreductase [Mycobacterium tuberculosis K85]
 gi|289747849|ref|ZP_06507227.1| oxidoreductase [Mycobacterium tuberculosis 02_1987]
 gi|289748549|ref|ZP_06507927.1| oxidoreductase [Mycobacterium tuberculosis T92]
 gi|289756143|ref|ZP_06515521.1| oxidoreductase [Mycobacterium tuberculosis EAS054]
 gi|289760181|ref|ZP_06519559.1| NADH-ubiquinone oxidoreductase [Mycobacterium tuberculosis T85]
 gi|289764198|ref|ZP_06523576.1| NADH-ubiquinone oxidoreductase [Mycobacterium tuberculosis GM 1503]
 gi|294995700|ref|ZP_06801391.1| oxidoreductase [Mycobacterium tuberculosis 210]
 gi|297632555|ref|ZP_06950335.1| oxidoreductase [Mycobacterium tuberculosis KZN 4207]
 gi|297729528|ref|ZP_06958646.1| oxidoreductase [Mycobacterium tuberculosis KZN R506]
 gi|306778376|ref|ZP_07416713.1| oxidoreductase [Mycobacterium tuberculosis SUMu001]
 gi|306778908|ref|ZP_07417245.1| oxidoreductase [Mycobacterium tuberculosis SUMu002]
 gi|306782697|ref|ZP_07421019.1| oxidoreductase [Mycobacterium tuberculosis SUMu003]
 gi|306787063|ref|ZP_07425385.1| oxidoreductase [Mycobacterium tuberculosis SUMu004]
 gi|306791621|ref|ZP_07429923.1| oxidoreductase [Mycobacterium tuberculosis SUMu005]
 gi|306795684|ref|ZP_07433986.1| oxidoreductase [Mycobacterium tuberculosis SUMu006]
 gi|306801659|ref|ZP_07438327.1| oxidoreductase [Mycobacterium tuberculosis SUMu008]
 gi|306970266|ref|ZP_07482927.1| oxidoreductase [Mycobacterium tuberculosis SUMu009]
 gi|306974499|ref|ZP_07487160.1| oxidoreductase [Mycobacterium tuberculosis SUMu010]
 gi|307082207|ref|ZP_07491377.1| oxidoreductase [Mycobacterium tuberculosis SUMu011]
 gi|307082548|ref|ZP_07491661.1| oxidoreductase [Mycobacterium tuberculosis SUMu012]
 gi|313656856|ref|ZP_07813736.1| oxidoreductase [Mycobacterium tuberculosis KZN V2475]
 gi|13879137|gb|AAK44314.1| NADH-ubiquinone oxidoreductase, 20 Kd subunit [Mycobacterium
           tuberculosis CDC1551]
 gi|31616845|emb|CAD92947.1| PROBABLE OXIDOREDUCTASE [Mycobacterium bovis AF2122/97]
 gi|121491642|emb|CAL70100.1| Probable oxidoreductase [Mycobacterium bovis BCG str. Pasteur
           1173P2]
 gi|124603274|gb|EAY61549.1| hypothetical protein TBCG_00083 [Mycobacterium tuberculosis C]
 gi|134152052|gb|EBA44097.1| hypothetical oxidoreductase [Mycobacterium tuberculosis str.
           Haarlem]
 gi|148503996|gb|ABQ71805.1| putative oxidoreductase [Mycobacterium tuberculosis H37Ra]
 gi|148719801|gb|ABR04426.1| hypothetical oxidoreductase [Mycobacterium tuberculosis F11]
 gi|224771581|dbj|BAH24387.1| putative oxidoreductase [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253318503|gb|ACT23106.1| oxidoreductase [Mycobacterium tuberculosis KZN 1435]
 gi|289414370|gb|EFD11610.1| oxidoreductase [Mycobacterium tuberculosis T46]
 gi|289418570|gb|EFD15771.1| oxidoreductase [Mycobacterium tuberculosis CPHL_A]
 gi|289436965|gb|EFD19458.1| oxidoreductase [Mycobacterium tuberculosis KZN 605]
 gi|289537093|gb|EFD41671.1| oxidoreductase [Mycobacterium tuberculosis K85]
 gi|289541725|gb|EFD45374.1| oxidoreductase [Mycobacterium tuberculosis T17]
 gi|289688377|gb|EFD55865.1| oxidoreductase [Mycobacterium tuberculosis 02_1987]
 gi|289689136|gb|EFD56565.1| oxidoreductase [Mycobacterium tuberculosis T92]
 gi|289696730|gb|EFD64159.1| oxidoreductase [Mycobacterium tuberculosis EAS054]
 gi|289711704|gb|EFD75720.1| NADH-ubiquinone oxidoreductase [Mycobacterium tuberculosis GM 1503]
 gi|289715745|gb|EFD79757.1| NADH-ubiquinone oxidoreductase [Mycobacterium tuberculosis T85]
 gi|308213367|gb|EFO72766.1| oxidoreductase [Mycobacterium tuberculosis SUMu001]
 gi|308328111|gb|EFP16962.1| oxidoreductase [Mycobacterium tuberculosis SUMu002]
 gi|308332461|gb|EFP21312.1| oxidoreductase [Mycobacterium tuberculosis SUMu003]
 gi|308336250|gb|EFP25101.1| oxidoreductase [Mycobacterium tuberculosis SUMu004]
 gi|308339839|gb|EFP28690.1| oxidoreductase [Mycobacterium tuberculosis SUMu005]
 gi|308343833|gb|EFP32684.1| oxidoreductase [Mycobacterium tuberculosis SUMu006]
 gi|308351559|gb|EFP40410.1| oxidoreductase [Mycobacterium tuberculosis SUMu008]
 gi|308352244|gb|EFP41095.1| oxidoreductase [Mycobacterium tuberculosis SUMu009]
 gi|308356201|gb|EFP45052.1| oxidoreductase [Mycobacterium tuberculosis SUMu010]
 gi|308360154|gb|EFP49005.1| oxidoreductase [Mycobacterium tuberculosis SUMu011]
 gi|308367717|gb|EFP56568.1| oxidoreductase [Mycobacterium tuberculosis SUMu012]
 gi|323717424|gb|EGB26629.1| oxidoreductase [Mycobacterium tuberculosis CDC1551A]
 gi|326905842|gb|EGE52775.1| oxidoreductase [Mycobacterium tuberculosis W-148]
 gi|328456789|gb|AEB02212.1| oxidoreductase [Mycobacterium tuberculosis KZN 4207]
          Length = 159

 Score =  128 bits (321), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 46/117 (39%), Positives = 64/117 (54%)

Query: 60  FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119
                C VE+  A  P YD ERFG    ASPR +D ++V G +T+ MA  LR+  +  P 
Sbjct: 43  GSCNGCEVEISGAFGPVYDAERFGARLVASPRHADALLVTGVVTHNMAGPLRKTLEATPR 102

Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKK 176
           PR VI+ G CA   G +  +Y VV     +VPVD+ + GCPPT  A++  +  +  K
Sbjct: 103 PRVVIACGDCALNRGVFADAYGVVGAVGEVVPVDVEIAGCPPTPAAIMAALRSVTGK 159


>gi|222632346|gb|EEE64478.1| hypothetical protein OsJ_19328 [Oryza sativa Japonica Group]
          Length = 976

 Score =  128 bits (321), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 64/76 (84%), Positives = 69/76 (90%)

Query: 106 MASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEA 165
            AS+  +VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEA
Sbjct: 893 WASSASQVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEA 952

Query: 166 LIYGILLLQKKIRRVG 181
           L+YG+L LQKKI R  
Sbjct: 953 LLYGVLQLQKKINRRR 968


>gi|195953675|ref|YP_002121965.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Hydrogenobaculum sp.
           Y04AAS1]
 gi|195933287|gb|ACG57987.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Hydrogenobaculum sp.
           Y04AAS1]
          Length = 165

 Score =  127 bits (319), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 39/120 (32%), Positives = 58/120 (48%), Gaps = 2/120 (1%)

Query: 55  LMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRV 113
           +  +  G    C  E+   S   YD+ERFG    ASP+  DV+ + G +T  M   L   
Sbjct: 42  IRHVDCGSCNACEYELTALSNVFYDIERFGIKFVASPKHVDVLTITGPITRNMYKPLLDA 101

Query: 114 YDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI-VPVDIYVPGCPPTAEALIYGILL 172
               P P+ +I++G C+  GG +  +Y +V G   I +   I + GCPP    +I GIL 
Sbjct: 102 IQNTPNPKVIIAIGDCSIDGGLFKGAYGIVGGLKDINIEPHILIRGCPPHPRDIISGILK 161


>gi|331694628|ref|YP_004330867.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Pseudonocardia
           dioxanivorans CB1190]
 gi|326949317|gb|AEA23014.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Pseudonocardia
           dioxanivorans CB1190]
          Length = 161

 Score =  127 bits (319), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 43/113 (38%), Positives = 63/113 (55%)

Query: 60  FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119
                C +E+  A  P YD ER+G    ASPR +D ++V G +T  M   LRR Y+ + E
Sbjct: 45  GSCNGCELEIGAAFGPVYDAERYGARLVASPRHADALVVTGAVTRNMVEPLRRTYEAVGE 104

Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILL 172
           P+ V+++G CA   G +  +Y VV     +VPVD+ V GCPP  E ++  + L
Sbjct: 105 PKVVVAVGDCARNCGVFAEAYGVVGAVADVVPVDLEVVGCPPRPETIVAALRL 157


>gi|325958030|ref|YP_004289496.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanobacterium sp.
           AL-21]
 gi|325329462|gb|ADZ08524.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanobacterium sp.
           AL-21]
          Length = 148

 Score =  127 bits (319), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 45/136 (33%), Positives = 74/136 (54%), Gaps = 10/136 (7%)

Query: 46  LVTWARTGSLMWM---TFGLACCAVEMMQA-SMPRYDLERFGFAPRASPRQSDVMIVAGT 101
           L +++R  ++  M   T G   C +E++     P+YD E++      +PR++DV++V G 
Sbjct: 3   LKSYSRARAVHVMLVYTGGCNGCDIEIVNCVLSPKYDAEQYKVFLTWNPREADVLVVTGP 62

Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY------SYSVVRGCDRIVPVDIY 155
           +T      LR +YD +PEP+ VI+ G+CA  GG Y        S  ++   D I+PVD  
Sbjct: 63  VTRHNEKPLREIYDAIPEPKAVIAAGACALMGGVYKNIHGDIPSEEIMGPVDNIIPVDAK 122

Query: 156 VPGCPPTAEALIYGIL 171
           VPGC    E ++ G++
Sbjct: 123 VPGCAVRPEDVLSGVV 138


>gi|88603352|ref|YP_503530.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Methanospirillum
           hungatei JF-1]
 gi|88188814|gb|ABD41811.1| membrane-bound hydrogenase subunit ehaN [Methanospirillum hungatei
           JF-1]
          Length = 150

 Score =  126 bits (318), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 43/149 (28%), Positives = 78/149 (52%), Gaps = 4/149 (2%)

Query: 40  VTSVDQLVTWARTGSLMWM---TFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVM 96
           +T++  L    R  S+      T     C +E++    PRYDLE++G     +PR++DV+
Sbjct: 1   MTTLQSLKNAVRQRSIHVCYVDTGSCNGCDIEVLACLSPRYDLEQYGIYVHNNPREADVL 60

Query: 97  IVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR-IVPVDIY 155
           ++ G +T +    LR V+D++PEP+  +S+G+C   G  +    ++ R   +  +P+   
Sbjct: 61  LIIGGVTPQWEDKLRMVWDKIPEPKVAVSIGNCPISGCVFSRPQTLTRAPAKSYIPIAAE 120

Query: 156 VPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           VPGCPP    +I  IL +   I +   ++
Sbjct: 121 VPGCPPRPTEIIQAILSVAPLIFKDWELR 149


>gi|182414283|ref|YP_001819349.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Opitutus terrae
           PB90-1]
 gi|177841497|gb|ACB75749.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Opitutus terrae
           PB90-1]
          Length = 285

 Score =  126 bits (317), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 41/119 (34%), Positives = 64/119 (53%), Gaps = 1/119 (0%)

Query: 49  WARTGSLMWMT-FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMA 107
           + R+  L  ++  G      ++       +DL RFG    ASPR +D ++V G ++  M 
Sbjct: 150 FGRSLRLRQVSAGGSGAEEADLNVLGTIGWDLGRFGIQFVASPRHADGLVVTGPVSKGME 209

Query: 108 SALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL 166
            ALR+ ++ MP P+ VI++G+ A  GG +     V  G D IVPVD+Y+PG PP    +
Sbjct: 210 LALRKTWEAMPAPKIVIAVGAEAISGGVFAGHPQVRNGVDAIVPVDLYIPGWPPHPLTI 268


>gi|240102115|ref|YP_002958423.1| formate hydrogenlyase II subunit H (Mhy2H) [Thermococcus
           gammatolerans EJ3]
 gi|239909668|gb|ACS32559.1| formate hydrogenlyase II subunit H (Mhy2H) [Thermococcus
           gammatolerans EJ3]
          Length = 283

 Score =  126 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 43/160 (26%), Positives = 66/160 (41%), Gaps = 31/160 (19%)

Query: 51  RTGSLMWMT---FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMA 107
           R  SL            C +E+     P YD ER G    ASPR +  M   G LT +  
Sbjct: 2   RLRSLYVFHLDTGACNGCEIELFDILTPYYDAERLGVRLAASPRHAHAMAATGPLTRQAY 61

Query: 108 SALRRVYDQM-PEPRYVISMGSCANGGGYYHYSYSVVRGCDR------------------ 148
            A +     M P+PR ++++G+CA  GG ++  Y + R  +                   
Sbjct: 62  YAAKEAIKAMPPKPRIIVAIGTCACSGGIFYNGYPIYRRPESGREGQEYPRRGGIFELVQ 121

Query: 149 --------IVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
                   + PV +Y+PGCPP  E ++YG+ L    + + 
Sbjct: 122 DLRDEGEYVGPV-VYIPGCPPRPEEILYGVALALGLVEKQ 160


>gi|215413939|ref|ZP_03422601.1| oxidoreductase [Mycobacterium tuberculosis 94_M4241A]
 gi|298527474|ref|ZP_07014883.1| conserved hypothetical protein [Mycobacterium tuberculosis
           94_M4241A]
 gi|298497268|gb|EFI32562.1| conserved hypothetical protein [Mycobacterium tuberculosis
           94_M4241A]
          Length = 159

 Score =  126 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 45/117 (38%), Positives = 63/117 (53%)

Query: 60  FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119
                C VE+  A  P YD  RFG    ASPR +D ++V G +T+ MA  LR+  +  P 
Sbjct: 43  GSCNGCEVEISGAFGPVYDAGRFGARLVASPRHADALLVTGVVTHNMAGPLRKTLEATPR 102

Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKK 176
           PR VI+ G CA   G +  +Y VV     +VPVD+ + GCPPT  A++  +  +  K
Sbjct: 103 PRVVIACGDCALNRGVFADAYGVVGAVGEVVPVDVEIAGCPPTPAAIMAALRSVTGK 159


>gi|197116467|ref|YP_002136894.1| iron-sulfur cluster-binding domain-containing hydrogenase subunit
           [Geobacter bemidjiensis Bem]
 gi|197085827|gb|ACH37098.1| hydrogenase subunit, iron-sulfur cluster-binding domain-containing
           protein [Geobacter bemidjiensis Bem]
          Length = 332

 Score =  125 bits (315), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 38/121 (31%), Positives = 66/121 (54%), Gaps = 1/121 (0%)

Query: 56  MWMTFGLACCAVEM-MQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVY 114
              T     C VE+ + A++  +D+E+ G      P ++D++++ G LT +  +   R+Y
Sbjct: 17  RINTGSCNGCDVELAVTAAVDEFDVEQLGCRYTEEPHEADILLITGPLTVRARNEALRLY 76

Query: 115 DQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQ 174
            + PE +  +++G C   GG +  SY+V     R +PVD+ VPGCPP  +AL+ GI   +
Sbjct: 77  AEAPETKVTVAVGVCPVSGGVFRDSYAVDGPVQRYLPVDLNVPGCPPRPQALLAGIAQAR 136

Query: 175 K 175
            
Sbjct: 137 D 137


>gi|34536232|dbj|BAC87587.1| unnamed protein product [Homo sapiens]
          Length = 155

 Score =  125 bits (315), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 61/111 (54%), Positives = 72/111 (64%), Gaps = 3/111 (2%)

Query: 3   LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62
           LT      +   +  +L K  A   + SS      ++V  +D LV WAR  SL  MTFGL
Sbjct: 37  LTPPVPVCLCASTQPALPKARAVAPKPSS---RGEYVVAKLDDLVNWARRSSLWPMTFGL 93

Query: 63  ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRV 113
           ACCAVEMM  + PRYD++RFG   RASPRQSDVMIVAGTLTNKMA ALR+V
Sbjct: 94  ACCAVEMMHMAAPRYDMDRFGVVFRASPRQSDVMIVAGTLTNKMAPALRKV 144


>gi|162149080|ref|YP_001603541.1| NADH-quinone oxidoreductase subunit B [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|161787657|emb|CAP57253.1| putative NADH-quinone oxidoreductase chain B [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 166

 Score =  125 bits (313), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 44/128 (34%), Positives = 74/128 (57%), Gaps = 1/128 (0%)

Query: 50  ARTGSLMWM-TFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108
           AR  ++  + T G   CA+E+       Y L   G A  A+PR ++V++V G LT  MA 
Sbjct: 22  ARPLAVFHVETGGCEGCAMEVAALDGAAYGLPATGIAFVATPRLAEVLLVTGPLTRAMAP 81

Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168
            L   +  MPEPR ++++G+CA  GG +  +Y+V+ G +    +D+ VPGCPP+  A++ 
Sbjct: 82  VLEAAWHAMPEPRALVAVGACAIDGGPFPENYAVLGGLEGRATLDVTVPGCPPSPAAILA 141

Query: 169 GILLLQKK 176
           G+  + ++
Sbjct: 142 GLARVLER 149


>gi|124485396|ref|YP_001030012.1| hypothetical protein Mlab_0571 [Methanocorpusculum labreanum Z]
 gi|124362937|gb|ABN06745.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Methanocorpusculum
           labreanum Z]
          Length = 159

 Score =  125 bits (313), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 37/136 (27%), Positives = 72/136 (52%), Gaps = 4/136 (2%)

Query: 40  VTSVDQLVTWARTGSLMWM---TFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVM 96
           ++ + Q     R  S+      T     C +E++    P+YD+E++G     +PR++DV+
Sbjct: 1   MSILQQFKNAVRQRSIHVCYVNTGSCNGCDIEILACLAPKYDIEQYGIYVHNNPREADVI 60

Query: 97  IVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR-GCDRIVPVDIY 155
           +V G ++ +    L  ++D++PEP+ V+++G+C   G  ++    ++     + +PV   
Sbjct: 61  LVTGGMSPQWLDKLPDLWDRVPEPKAVVTIGNCPISGCVFNRPGKLIDPPVSKYIPVTAA 120

Query: 156 VPGCPPTAEALIYGIL 171
           VPGCPP    +I  IL
Sbjct: 121 VPGCPPRPSEIISAIL 136


>gi|291515582|emb|CBK64792.1| Ni,Fe-hydrogenase III small subunit [Alistipes shahii WAL 8301]
          Length = 254

 Score =  125 bits (313), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 42/133 (31%), Positives = 67/133 (50%), Gaps = 1/133 (0%)

Query: 49  WARTGSLMWMT-FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMA 107
           ++R   L  ++  G A   +E+       +DL RFG    ASPR +D ++V+G +T  MA
Sbjct: 122 FSRALQLREVSAGGDASVEMELGATGNVNFDLGRFGIGFTASPRHADGVVVSGPVTVNMA 181

Query: 108 SALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALI 167
            AL   YD + EP+ +++ GS A  GG +  S +V R        D+++PG P      I
Sbjct: 182 EALEICYDAVAEPKILVACGSEACSGGLFADSRAVDRTFFDTHTPDLWLPGAPTHPMTYI 241

Query: 168 YGILLLQKKIRRV 180
            G++ L  +  R 
Sbjct: 242 DGMMNLLGRKTRQ 254


>gi|227830172|ref|YP_002831952.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Sulfolobus
           islandicus L.S.2.15]
 gi|227456620|gb|ACP35307.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Sulfolobus
           islandicus L.S.2.15]
          Length = 201

 Score =  124 bits (311), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 40/131 (30%), Positives = 67/131 (51%), Gaps = 13/131 (9%)

Query: 49  WARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMA 107
           + R+  L  +  G    C +E+   S P YD+ RF      +PR +D ++V G +T KM 
Sbjct: 81  FKRSFYLYPIDSGTCGGCNMELKLISSPEYDMTRFSIFFTNTPRHADALVVMGVMTEKMK 140

Query: 108 SALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD--IYVPGCPPTAEA 165
             L++ Y+ MPEP+ VI +G+CA  GG               VP++  + +PGCPP    
Sbjct: 141 EVLKKAYEAMPEPKVVILLGACAISGGIIGEG----------VPLEAVVEIPGCPPNPFT 190

Query: 166 LIYGILLLQKK 176
           ++  ++ ++ K
Sbjct: 191 ILEALMKVKGK 201


>gi|15897890|ref|NP_342495.1| formate hydrogenlyase subunit 7 (hycG) [Sulfolobus solfataricus P2]
 gi|227827480|ref|YP_002829260.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Sulfolobus
           islandicus M.14.25]
 gi|229578987|ref|YP_002837385.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Sulfolobus
           islandicus Y.G.57.14]
 gi|229582260|ref|YP_002840659.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Sulfolobus
           islandicus Y.N.15.51]
 gi|229584694|ref|YP_002843196.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Sulfolobus
           islandicus M.16.27]
 gi|284173589|ref|ZP_06387558.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Sulfolobus
           solfataricus 98/2]
 gi|13814203|gb|AAK41285.1| Formate hydrogenlyase subunit 7 (hycG) [Sulfolobus solfataricus P2]
 gi|227459276|gb|ACP37962.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Sulfolobus
           islandicus M.14.25]
 gi|228009701|gb|ACP45463.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Sulfolobus
           islandicus Y.G.57.14]
 gi|228012976|gb|ACP48737.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Sulfolobus
           islandicus Y.N.15.51]
 gi|228019744|gb|ACP55151.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Sulfolobus
           islandicus M.16.27]
 gi|261602599|gb|ACX92202.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Sulfolobus
           solfataricus 98/2]
          Length = 201

 Score =  124 bits (311), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 40/131 (30%), Positives = 67/131 (51%), Gaps = 13/131 (9%)

Query: 49  WARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMA 107
           + R+  L  +  G    C +E+   S P YD+ RF      +PR +D ++V G +T KM 
Sbjct: 81  FKRSFYLYPIDSGTCGGCNMELKLISSPEYDMTRFSIFFTNTPRHADALVVMGVMTEKMK 140

Query: 108 SALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD--IYVPGCPPTAEA 165
             L++ Y+ MPEP+ VI +G+CA  GG               VP++  + +PGCPP    
Sbjct: 141 EVLKKAYEAMPEPKVVILLGACAISGGIIGEG----------VPLEAVVEIPGCPPNPFT 190

Query: 166 LIYGILLLQKK 176
           ++  ++ ++ K
Sbjct: 191 ILEALMKVKGK 201


>gi|313157372|gb|EFR56795.1| NADH ubiquinone oxidoreductase, 20 Kd subunit [Alistipes sp. HGB5]
          Length = 254

 Score =  124 bits (311), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 43/133 (32%), Positives = 64/133 (48%), Gaps = 1/133 (0%)

Query: 49  WARTGSLM-WMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMA 107
           + R+  L      G A   +E+       +DL R+G    ASPR +D ++V+G +T  MA
Sbjct: 122 FGRSLQLREVCAGGDASVEMELNATGNVNFDLGRYGIGFTASPRHADGVVVSGPITVNMA 181

Query: 108 SALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALI 167
            ALR   D +  P+ ++  GS A  GG +  S +V R        D+++PG P      I
Sbjct: 182 EALRICCDAVANPKILVVCGSEACSGGLFAGSRAVDRTFFDTHAADLWLPGAPTHPMTFI 241

Query: 168 YGILLLQKKIRRV 180
            GIL L  K +R 
Sbjct: 242 DGILNLLGKKKRE 254


>gi|148643124|ref|YP_001273637.1| energy-converting hydrogenase B, subunit M, EhbM
           [Methanobrevibacter smithii ATCC 35061]
 gi|222445361|ref|ZP_03607876.1| hypothetical protein METSMIALI_00989 [Methanobrevibacter smithii
           DSM 2375]
 gi|261350078|ref|ZP_05975495.1| putative hydrogenase, group 4, EchC subunit [Methanobrevibacter
           smithii DSM 2374]
 gi|148552141|gb|ABQ87269.1| energy-converting hydrogenase B, subunit M, EhbM
           [Methanobrevibacter smithii ATCC 35061]
 gi|222434926|gb|EEE42091.1| hypothetical protein METSMIALI_00989 [Methanobrevibacter smithii
           DSM 2375]
 gi|288860864|gb|EFC93162.1| putative hydrogenase, group 4, EchC subunit [Methanobrevibacter
           smithii DSM 2374]
          Length = 148

 Score =  123 bits (310), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 41/142 (28%), Positives = 73/142 (51%), Gaps = 10/142 (7%)

Query: 46  LVTWARTGSLMWM---TFGLACCAVEM-MQASMPRYDLERFGFAPRASPRQSDVMIVAGT 101
           + +++R  ++  M   T G   C +E+      PR+D E++      +PR++DV++V G 
Sbjct: 3   IKSFSRARAIHLMLVYTGGCNGCDIEIVNSVLSPRFDAEQYKVFLTWNPREADVLVVTGP 62

Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY------SYSVVRGCDRIVPVDIY 155
           +T      L  +Y  +PEP+ V++ GSCA  GG Y        S  +    + I+PVD  
Sbjct: 63  VTKLNRKPLEEIYKAIPEPKLVVAAGSCALMGGVYKNIHGDIPSEEIEGPVENIIPVDAK 122

Query: 156 VPGCPPTAEALIYGILLLQKKI 177
           VPGC    + ++ G++ +  K+
Sbjct: 123 VPGCAVRPQDVLSGVVSILPKL 144


>gi|330834667|ref|YP_004409395.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Metallosphaera
           cuprina Ar-4]
 gi|329566806|gb|AEB94911.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Metallosphaera
           cuprina Ar-4]
          Length = 203

 Score =  123 bits (310), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 45/132 (34%), Positives = 71/132 (53%), Gaps = 9/132 (6%)

Query: 48  TWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKM 106
           T+ R+  +  +  G    C +E    S P+YD+ RFG     +P+ +D +IV G L+ KM
Sbjct: 80  TFKRSFFVYPIDTGSCGGCNLEFRLISAPQYDMTRFGIFFVNTPKHADALIVMGNLSEKM 139

Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL 166
           +  LR+ YD MPEP+ VI +G+CA  GG        V G    +  ++ VPGCPPT  ++
Sbjct: 140 SKVLRKAYDVMPEPKLVILIGTCAISGG--------VTGIPPDIKGNVIVPGCPPTPSSI 191

Query: 167 IYGILLLQKKIR 178
           +  ++  +   R
Sbjct: 192 LDALIAAKGDKR 203


>gi|149193854|ref|ZP_01870952.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Caminibacter
           mediatlanticus TB-2]
 gi|149135807|gb|EDM24285.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Caminibacter
           mediatlanticus TB-2]
          Length = 140

 Score =  123 bits (310), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 36/128 (28%), Positives = 63/128 (49%), Gaps = 1/128 (0%)

Query: 56  MWMTFGLACCAVEMMQASMP-RYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVY 114
              T     C VE+  + M  R+DL++ G     +   +D+ ++ G +T +    L+ V 
Sbjct: 11  RINTGSCNGCDVEIAASVMSSRFDLQKLGCEYIETSEDADIFMITGPVTARSLPFLKEVI 70

Query: 115 DQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQ 174
               +P  VIS+G+C+   G +  SY ++   D  V VD+ V GCPP  +A++ G+    
Sbjct: 71  KNHKKPYVVISLGTCSVTCGIFRDSYPILGPVDSYVNVDVNVAGCPPRPQAILEGVKTAI 130

Query: 175 KKIRRVGN 182
             ++R  N
Sbjct: 131 DILKRKNN 138


>gi|255021729|ref|ZP_05293769.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Acidithiobacillus
           caldus ATCC 51756]
 gi|254968869|gb|EET26391.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Acidithiobacillus
           caldus ATCC 51756]
          Length = 264

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 38/114 (33%), Positives = 60/114 (52%), Gaps = 1/114 (0%)

Query: 51  RTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASA 109
           R+  +  +  G    C  E+     P Y+L R G     SPR +D+++V G +T  M   
Sbjct: 125 RSLHIRHVDAGSCNGCESEIGALDNPFYNLHRLGIFFTPSPRFADLLMVTGPVTAPMHGP 184

Query: 110 LRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTA 163
           L   ++ MPEPR V++ G+CA  G      Y+   G + ++PVD+++PGCPP  
Sbjct: 185 LLATWEAMPEPRMVLATGTCAVSGAPMDGGYAGGSGLNALLPVDVWLPGCPPNP 238


>gi|209545176|ref|YP_002277405.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209532853|gb|ACI52790.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 166

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 44/128 (34%), Positives = 74/128 (57%), Gaps = 1/128 (0%)

Query: 50  ARTGSLMWM-TFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108
           AR  ++  + T G   CA+E+       Y L   G A  A+PR ++V++V G LT  MA 
Sbjct: 22  ARPLAVFHVETGGCEGCAMEVAALDGAAYGLPATGIAFVATPRLAEVLLVTGPLTRAMAP 81

Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168
            L   +  MPEPR ++++G+CA  GG +  +Y+V+ G +    +D+ VPGCPP+  A++ 
Sbjct: 82  VLEAAWHAMPEPRALVAVGACAIDGGPFPENYAVLGGLEGRATLDMTVPGCPPSPAAILA 141

Query: 169 GILLLQKK 176
           G+  + ++
Sbjct: 142 GLARVLER 149


>gi|288561258|ref|YP_003424744.1| energy-converting hydrogenase B subunit M EhbM [Methanobrevibacter
           ruminantium M1]
 gi|288543968|gb|ADC47852.1| energy-converting hydrogenase B subunit M EhbM [Methanobrevibacter
           ruminantium M1]
          Length = 148

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 38/136 (27%), Positives = 72/136 (52%), Gaps = 10/136 (7%)

Query: 46  LVTWARTGSLMWM---TFGLACCAVEM-MQASMPRYDLERFGFAPRASPRQSDVMIVAGT 101
           L T +R+ ++  M   T G   C +E+      P++D+E++G     +PR++D+++V G 
Sbjct: 3   LKTLSRSKAIHIMLVYTGGCNGCDIEIVNAVLSPKFDMEQYGVFLTWNPREADILVVTGP 62

Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYS------VVRGCDRIVPVDIY 155
           +T      L  +Y+ +P P+ V++ GSCA  GG Y   +       +    + ++PVD  
Sbjct: 63  VTYDNRKPLEDIYNAIPNPKLVVAAGSCALMGGVYKNCHGDIPSEEIEGPVENVIPVDAK 122

Query: 156 VPGCPPTAEALIYGIL 171
           VPGC    + ++ G++
Sbjct: 123 VPGCAVRPQDVLAGVV 138


>gi|119188401|ref|XP_001244807.1| hypothetical protein CIMG_04248 [Coccidioides immitis RS]
          Length = 84

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 63/79 (79%), Positives = 70/79 (88%)

Query: 106 MASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEA 165
           MA ALR+VYDQMP+PR+VISMGSCANGGGYYHYSYSV RGCDRIVPVDIYVPGCPPT+EA
Sbjct: 1   MAPALRQVYDQMPDPRWVISMGSCANGGGYYHYSYSVTRGCDRIVPVDIYVPGCPPTSEA 60

Query: 166 LIYGILLLQKKIRRVGNVK 184
           L+YGI  LQKK+R     +
Sbjct: 61  LMYGIFQLQKKMRHTQITR 79


>gi|296116642|ref|ZP_06835252.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Gluconacetobacter
           hansenii ATCC 23769]
 gi|295976854|gb|EFG83622.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Gluconacetobacter
           hansenii ATCC 23769]
          Length = 148

 Score =  123 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 39/112 (34%), Positives = 63/112 (56%)

Query: 59  TFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMP 118
           T G A CA+E+    +P  D    G     SPR +D+++VAG +T  M   L + +  MP
Sbjct: 19  TGGCAGCAMELAALDVPADDAGCKGICFVRSPRHADILLVAGPVTRAMVPVLEQAWQAMP 78

Query: 119 EPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGI 170
            PR ++++G CA  GG +  +Y+V+ G    V +D+ +PGCPP+ + +   I
Sbjct: 79  GPRALMAIGDCAIDGGMFGENYAVLGGLRGRVHLDLSLPGCPPSPDMIQSAI 130


>gi|126179131|ref|YP_001047096.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Methanoculleus
           marisnigri JR1]
 gi|125861925|gb|ABN57114.1| membrane-bound hydrogenase subunit ehaN [Methanoculleus marisnigri
           JR1]
          Length = 151

 Score =  123 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 37/144 (25%), Positives = 77/144 (53%), Gaps = 4/144 (2%)

Query: 40  VTSVDQLVTWARTGSLMWM---TFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVM 96
           ++ + ++    R+ S+            C +E++    PRYD+E++G     +PR++DV+
Sbjct: 1   MSILQKIKNTVRSRSIHVSYVDVGSCNGCDIEVLACLAPRYDIEQYGIYVHNNPREADVL 60

Query: 97  IVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR-GCDRIVPVDIY 155
           +V G++T +    LR ++D++PEP+  +++G+C   G  Y    ++     ++ +P+   
Sbjct: 61  LVIGSVTPQWVDKLRDIWDKIPEPKVAVAIGNCPISGCVYARRGTLTSPPVEKYIPIAAQ 120

Query: 156 VPGCPPTAEALIYGILLLQKKIRR 179
           VPGCPP    ++  IL +   I +
Sbjct: 121 VPGCPPRPTEILNAILSVAPLIFK 144


>gi|84490226|ref|YP_448458.1| EhbM [Methanosphaera stadtmanae DSM 3091]
 gi|84373545|gb|ABC57815.1| EhbM [Methanosphaera stadtmanae DSM 3091]
          Length = 150

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 39/136 (28%), Positives = 75/136 (55%), Gaps = 10/136 (7%)

Query: 46  LVTWARTGSLMWM---TFGLACCAVEMMQA-SMPRYDLERFGFAPRASPRQSDVMIVAGT 101
           L + AR  ++  M   T G   C +E++     P++D+E++      +PR++DV++V+G 
Sbjct: 3   LKSQARKKAIHLMLVYTGGCNGCDIEIVNTVLSPKFDIEQYNVYLTWNPREADVLVVSGP 62

Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY------SYSVVRGCDRIVPVDIY 155
           +T      L ++Y+ +P+P+ V+++G+CA  GG Y        S  +    D ++PVD  
Sbjct: 63  VTYWTKEPLLKIYEAIPKPKLVVAVGACALTGGVYKNIHGEIPSEEIEGPVDNVIPVDAK 122

Query: 156 VPGCPPTAEALIYGIL 171
           +PGC    E ++ G++
Sbjct: 123 IPGCAVRPEDVVAGVV 138


>gi|238619636|ref|YP_002914462.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Sulfolobus
           islandicus M.16.4]
 gi|238380706|gb|ACR41794.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Sulfolobus
           islandicus M.16.4]
          Length = 201

 Score =  121 bits (305), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 39/131 (29%), Positives = 66/131 (50%), Gaps = 13/131 (9%)

Query: 49  WARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMA 107
           + R+  L  +  G    C +E+   S P YD+ RF      +PR +D ++V G +T KM 
Sbjct: 81  FKRSFYLYPIDSGTCGGCNMELKLISSPEYDMTRFSIFFTNTPRHADALVVMGVMTEKMK 140

Query: 108 SALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD--IYVPGCPPTAEA 165
             L++ Y+ M EP+ VI +G+CA  GG               VP++  + +PGCPP    
Sbjct: 141 EVLKKAYEAMQEPKVVILLGACAISGGIIGEG----------VPLEAVVEIPGCPPNPFT 190

Query: 166 LIYGILLLQKK 176
           ++  ++ ++ K
Sbjct: 191 ILEALMKVKGK 201


>gi|323477271|gb|ADX82509.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Sulfolobus
           islandicus HVE10/4]
          Length = 201

 Score =  121 bits (305), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 39/129 (30%), Positives = 66/129 (51%), Gaps = 13/129 (10%)

Query: 49  WARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMA 107
           + R+  L  +  G    C +E+   S P YD+ RF      +PR +D ++V G +T KM 
Sbjct: 81  FKRSFYLYPIDSGTCGGCNMELKLISSPEYDMTRFSIFFTNTPRHADALVVMGVMTEKMK 140

Query: 108 SALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD--IYVPGCPPTAEA 165
             L++ Y+ MPEP+ VI +G+CA  GG               VP++  + +PGCPP    
Sbjct: 141 EVLKKAYEAMPEPKVVILLGACAISGGIIGEG----------VPLEAVVEIPGCPPNPFT 190

Query: 166 LIYGILLLQ 174
           ++  ++ ++
Sbjct: 191 ILEALMKVK 199


>gi|284997591|ref|YP_003419358.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Sulfolobus
           islandicus L.D.8.5]
 gi|284445486|gb|ADB86988.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Sulfolobus
           islandicus L.D.8.5]
          Length = 201

 Score =  121 bits (305), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 39/131 (29%), Positives = 66/131 (50%), Gaps = 13/131 (9%)

Query: 49  WARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMA 107
           + R+  L  +  G    C +E+   S P YD+ RF      +PR +D ++V G +T KM 
Sbjct: 81  FKRSFYLYPIDSGTCGGCNMELKLISSPEYDMTRFSIFFTNTPRHADALVVMGVMTEKMK 140

Query: 108 SALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD--IYVPGCPPTAEA 165
             L++ Y+ MPEP+ VI +G+CA  GG               VP++  + + GCPP    
Sbjct: 141 EVLKKAYEAMPEPKVVILLGACAISGGIIGEG----------VPLEAVVEISGCPPNPFT 190

Query: 166 LIYGILLLQKK 176
           ++  ++ ++ K
Sbjct: 191 ILEALMKVKGK 201


>gi|323474538|gb|ADX85144.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Sulfolobus
           islandicus REY15A]
          Length = 201

 Score =  121 bits (305), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 39/129 (30%), Positives = 66/129 (51%), Gaps = 13/129 (10%)

Query: 49  WARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMA 107
           + R+  L  +  G    C +E+   S P YD+ RF      +PR +D ++V G +T KM 
Sbjct: 81  FKRSFYLYPIDSGTCGGCNMELKLISSPEYDMTRFSIFFTNTPRHADALVVMGVMTEKMK 140

Query: 108 SALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD--IYVPGCPPTAEA 165
             L++ Y+ MPEP+ VI +G+CA  GG               VP++  + +PGCPP    
Sbjct: 141 EVLKKAYEAMPEPKVVILLGACAISGGIIGEG----------VPLEAVVEIPGCPPNPFT 190

Query: 166 LIYGILLLQ 174
           ++  ++ ++
Sbjct: 191 ILEALMKVK 199


>gi|307353348|ref|YP_003894399.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanoplanus
           petrolearius DSM 11571]
 gi|307156581|gb|ADN35961.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanoplanus
           petrolearius DSM 11571]
          Length = 160

 Score =  121 bits (303), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 36/144 (25%), Positives = 75/144 (52%), Gaps = 4/144 (2%)

Query: 40  VTSVDQLVTWARTGSL---MWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVM 96
           ++ + +L    R+ S+            C +E++    PRYDLE++G     +PR++DV+
Sbjct: 1   MSIIQKLKNKVRSKSIHVSYVNVGSCNGCDIEILACLSPRYDLEQYGIYVHNNPREADVL 60

Query: 97  IVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR-GCDRIVPVDIY 155
           ++ G L  +    L  +++++PEP+  I++G+C   G  ++   S V     + +P+   
Sbjct: 61  LITGALCEQWDDKLVSLWEKIPEPKAAITIGNCPVSGCVFNRRGSYVNPPVSKHIPIAAS 120

Query: 156 VPGCPPTAEALIYGILLLQKKIRR 179
           +PGCPP    ++  IL +  ++ +
Sbjct: 121 IPGCPPRPSEIVSTILSIAPEVFK 144


>gi|146304195|ref|YP_001191511.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Metallosphaera
           sedula DSM 5348]
 gi|145702445|gb|ABP95587.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Metallosphaera
           sedula DSM 5348]
          Length = 203

 Score =  121 bits (303), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 43/134 (32%), Positives = 71/134 (52%), Gaps = 9/134 (6%)

Query: 47  VTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNK 105
           VT+ R+  L  +  G    C +E+   S P+YD+ RFG     +P+ +D +++ G L  +
Sbjct: 78  VTFKRSFYLYPLDAGSCGGCNLELRLISSPQYDMTRFGIFFTNTPKHADALLIMGNLGKR 137

Query: 106 MASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEA 165
           M   +RR YD +P P+ VI +G+CA  GG        V G    +  D+ VPGCPPT  +
Sbjct: 138 MEEVIRRAYDVIPSPKLVILLGTCAISGG--------VTGIPPDIRGDVIVPGCPPTPAS 189

Query: 166 LIYGILLLQKKIRR 179
           ++  ++  +   R+
Sbjct: 190 ILDALIKAKGGDRK 203


>gi|78708331|gb|ABB47306.1| NAD, putative [Oryza sativa Japonica Group]
          Length = 141

 Score =  120 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 41/76 (53%), Positives = 56/76 (73%), Gaps = 1/76 (1%)

Query: 106 MASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGCDRIVPVDIYVPGCPPTAE 164
           MA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VR  D+++PVD+Y+PGCPP  E
Sbjct: 1   MAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRRVDKLIPVDVYLPGCPPKPE 60

Query: 165 ALIYGILLLQKKIRRV 180
           A+I  +  L+KKI R 
Sbjct: 61  AVIDALTKLRKKISRE 76


>gi|110289458|gb|AAP54717.2| NAD, putative [Oryza sativa Japonica Group]
          Length = 141

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 42/76 (55%), Positives = 57/76 (75%), Gaps = 1/76 (1%)

Query: 106 MASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGCDRIVPVDIYVPGCPPTAE 164
           MA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++PVD+Y+PGCPP  E
Sbjct: 1   MAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPE 60

Query: 165 ALIYGILLLQKKIRRV 180
           A+I  +  L+KKI R 
Sbjct: 61  AVIDALTKLRKKISRE 76


>gi|294340395|emb|CAZ88776.1| Putative NADH ubiquinone oxidoreductase, 20 kDa subunit [Thiomonas
           sp. 3As]
          Length = 273

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 42/121 (34%), Positives = 66/121 (54%), Gaps = 1/121 (0%)

Query: 44  DQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL 102
             +  + ++  +  +  G    C  E+     P Y+L R G     SPR +D+++V G +
Sbjct: 127 QAMKGFGKSLHIRHVDTGSCNGCESELQALLNPFYNLHRLGVFFTPSPRFADLLLVTGPV 186

Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162
           T  M   L R Y+ MP+PR+V++ G+CA GGG     Y+   G D I+PVD+++PGCPP 
Sbjct: 187 TAAMREPLLRTYEAMPQPRWVMAAGTCATGGGTNGGGYACHEGLDGILPVDVWLPGCPPN 246

Query: 163 A 163
            
Sbjct: 247 P 247


>gi|269128891|ref|YP_003302261.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Thermomonospora
           curvata DSM 43183]
 gi|268313849|gb|ACZ00224.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Thermomonospora
           curvata DSM 43183]
          Length = 158

 Score =  119 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 44/114 (38%), Positives = 64/114 (56%)

Query: 60  FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119
                C +E+     P +D ER+G    ASPR +D ++V G +T  M +ALRR Y+ +PE
Sbjct: 42  GSCNGCELEIASVFGPVHDAERYGARLVASPRHADALLVTGPVTRNMETALRRTYEAVPE 101

Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLL 173
           P+ VI++G CA   G +  +Y V      +VPVD+ VPGCPP  E +   +  L
Sbjct: 102 PKVVIALGDCARNCGVFAGAYGVAGAVGDVVPVDVEVPGCPPRPEDITKALRGL 155


>gi|221104717|ref|XP_002169223.1| PREDICTED: similar to CG9172 CG9172-PA, partial [Hydra
           magnipapillata]
          Length = 70

 Score =  119 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 58/70 (82%), Positives = 63/70 (90%)

Query: 58  MTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQM 117
           MTFGLACCAVEMM  + PRYD++RFG   RASPRQ+DVMIVAGTLTNKMA ALRRVYDQM
Sbjct: 1   MTFGLACCAVEMMHFAAPRYDMDRFGVVFRASPRQADVMIVAGTLTNKMAPALRRVYDQM 60

Query: 118 PEPRYVISMG 127
           PEPR+VISMG
Sbjct: 61  PEPRWVISMG 70


>gi|13542288|ref|NP_111976.1| Ni,Fe-hydrogenase III small subunit [Thermoplasma volcanium GSS1]
 gi|14325721|dbj|BAB60624.1| formate hydrogenlyase subunit 2 [Thermoplasma volcanium GSS1]
          Length = 222

 Score =  118 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 42/147 (28%), Positives = 66/147 (44%), Gaps = 9/147 (6%)

Query: 35  HKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
            + F +   +      R+  +  +  G    C +E +    P+YD  R G     +PR +
Sbjct: 73  QRIFTIKKTEDTFR--RSFHVFPIDSGACGACNMEFLSIFSPQYDANRLGIFMVNTPRYA 130

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD 153
           D +IV G +T  M  AL R Y+ MPEP+ VI+MG+CA  GG    +             +
Sbjct: 131 DALIVMGVMTPGMKEALDRAYEAMPEPKLVIAMGACAVTGGIMGENP------LDREKYN 184

Query: 154 IYVPGCPPTAEALIYGILLLQKKIRRV 180
           + + GCPP+   LI  +    K  R+ 
Sbjct: 185 VEIAGCPPSPYTLIAALNAAMKDKRKA 211


>gi|254166691|ref|ZP_04873545.1| NADH ubiquinone oxidoreductase, 20 Kd subunit family
           [Aciduliprofundum boonei T469]
 gi|289596449|ref|YP_003483145.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Aciduliprofundum
           boonei T469]
 gi|197624301|gb|EDY36862.1| NADH ubiquinone oxidoreductase, 20 Kd subunit family
           [Aciduliprofundum boonei T469]
 gi|289534236|gb|ADD08583.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Aciduliprofundum
           boonei T469]
          Length = 179

 Score =  118 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 39/120 (32%), Positives = 63/120 (52%), Gaps = 13/120 (10%)

Query: 55  LMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRV 113
           +  +  G  + C  E+     P+YD+ R GF     PR +D+++V G  T KM   L+  
Sbjct: 66  IFVLDVGSCSSCNREISLLGAPQYDMNRLGFFFTPVPRHADILLVIGEPTEKMIPVLKEA 125

Query: 114 YDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLL 173
           Y+QMP+P+ V++ G+CAN               ++I+ VD  V GCPP   A++  +L+L
Sbjct: 126 YEQMPKPKIVVTAGACANE------------KIEKIIKVDARVSGCPPQPIAILKALLML 173


>gi|254167339|ref|ZP_04874191.1| NADH ubiquinone oxidoreductase, 20 Kd subunit family
           [Aciduliprofundum boonei T469]
 gi|197623602|gb|EDY36165.1| NADH ubiquinone oxidoreductase, 20 Kd subunit family
           [Aciduliprofundum boonei T469]
          Length = 179

 Score =  118 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 41/120 (34%), Positives = 64/120 (53%), Gaps = 13/120 (10%)

Query: 55  LMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRV 113
           +  +  G  + C  E+   + P+YDL R GF     PR +D+++V G  T KM   L+  
Sbjct: 66  IFVLDVGSCSSCNREISLLNSPQYDLHRLGFFFTPVPRHADILLVIGEPTEKMIPVLKEA 125

Query: 114 YDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLL 173
           Y+QMPEP+ V++ G+CAN               ++I+ VD  V GCPP   A++  +L+L
Sbjct: 126 YEQMPEPKIVMTAGACANE------------KIEKIIKVDARVSGCPPQPIAILKALLML 173


>gi|297837947|ref|XP_002886855.1| hypothetical protein ARALYDRAFT_475566 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297840985|ref|XP_002888374.1| hypothetical protein ARALYDRAFT_475599 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297332696|gb|EFH63114.1| hypothetical protein ARALYDRAFT_475566 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297334215|gb|EFH64633.1| hypothetical protein ARALYDRAFT_475599 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 141

 Score =  116 bits (292), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 43/76 (56%), Positives = 57/76 (75%), Gaps = 1/76 (1%)

Query: 106 MASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGCDRIVPVDIYVPGCPPTAE 164
           MA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++PVD+Y+PGCPP  E
Sbjct: 1   MAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPE 60

Query: 165 ALIYGILLLQKKIRRV 180
           A+I  I  L+KKI R 
Sbjct: 61  AVIDAITKLRKKIARE 76


>gi|183981668|ref|YP_001849959.1| oxidoreductase [Mycobacterium marinum M]
 gi|183174994|gb|ACC40104.1| oxidoreductase [Mycobacterium marinum M]
          Length = 159

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 45/111 (40%), Positives = 61/111 (54%)

Query: 60  FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119
                C VE+  A  P YD ERFG    ASPR +D ++V G +T  MA  L+      P+
Sbjct: 43  GSCNGCEVEISGAFGPVYDAERFGARLVASPRHADALLVTGVVTRNMAQPLKNTLAATPQ 102

Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGI 170
           PR VI+ G CA   G +  +Y VV     +VPVD+ VPGCPPT + ++  +
Sbjct: 103 PRVVIACGDCALNRGVFADAYGVVGAVSEVVPVDVEVPGCPPTPDQVVAAL 153


>gi|77554378|gb|ABA97174.1| NAD, putative [Oryza sativa Japonica Group]
          Length = 141

 Score =  115 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 41/76 (53%), Positives = 56/76 (73%), Gaps = 1/76 (1%)

Query: 106 MASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGCDRIVPVDIYVPGCPPTAE 164
           MA +L R+Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++PVD+Y+P CPP  E
Sbjct: 1   MAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPSCPPKPE 60

Query: 165 ALIYGILLLQKKIRRV 180
           A+I  +  L+KKI R 
Sbjct: 61  AVIDALTKLRKKISRE 76


>gi|257077039|ref|ZP_05571400.1| Ni,Fe-hydrogenase III small subunit [Ferroplasma acidarmanus fer1]
          Length = 199

 Score =  115 bits (287), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 43/123 (34%), Positives = 60/123 (48%), Gaps = 9/123 (7%)

Query: 55  LMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRV 113
           L  +  G    C VE      P+YD  RF      +PR +D ++V G  T+ M + L+  
Sbjct: 84  LYPIDSGTCGACNVEFTTLFSPQYDTNRFKIFMSNTPRHADALVVMGVYTDGMEAVLKEA 143

Query: 114 YDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLL 173
           YD MP P+ VI +G+CA  GG         R  D+    DI V GCPPT  ++I  I+  
Sbjct: 144 YDAMPSPKIVIGIGACALSGGIIGS-----RAMDKY---DIEVAGCPPTPASIINAIIKA 195

Query: 174 QKK 176
           + K
Sbjct: 196 RGK 198


>gi|268679821|ref|YP_003304252.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Sulfurospirillum
           deleyianum DSM 6946]
 gi|268617852|gb|ACZ12217.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Sulfurospirillum
           deleyianum DSM 6946]
          Length = 138

 Score =  114 bits (286), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 57/118 (48%), Gaps = 1/118 (0%)

Query: 56  MWMTFGLACCAVEMMQ-ASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVY 114
              T     C VE++    +P++  +  G      P  +++++V G +T +    L+   
Sbjct: 9   RINTGSCNGCDVEILASVLLPKFGFDALGCVYTNDPTLANILLVTGAITARSTPYLQAAL 68

Query: 115 DQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILL 172
            Q+P  + V+++G C   GG +  SY++    D  V VD+ + GCPP+ + +  G+  
Sbjct: 69  KQLPSKKIVVALGICPISGGVFRDSYAITGPLDTFVDVDVNISGCPPSPKEIAQGLAQ 126


>gi|295673893|ref|XP_002797492.1| NADH-ubiquinone oxidoreductase 20 kDa subunit [Paracoccidioides
           brasiliensis Pb01]
 gi|226280142|gb|EEH35708.1| NADH-ubiquinone oxidoreductase 20 kDa subunit [Paracoccidioides
           brasiliensis Pb01]
          Length = 159

 Score =  113 bits (282), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 53/130 (40%), Positives = 70/130 (53%), Gaps = 12/130 (9%)

Query: 27  SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP 86
            RISS I+ +     S+D++V WAR GSL  ++FGLACC +EMM  SMPRYD +R G   
Sbjct: 26  ERISSLISLQEEKNGSIDKVVNWAREGSLWPLSFGLACCNMEMMAVSMPRYDQDRLGTIF 85

Query: 87  RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGC 146
           RASPRQSDV+IVA  +T +              PR  ++ G      G   Y  S +   
Sbjct: 86  RASPRQSDVIIVADAVTKQDG------------PRLAVTRGQVRGQAGSSRYLCSELSSN 133

Query: 147 DRIVPVDIYV 156
            R + +  YV
Sbjct: 134 GRDIALSDYV 143


>gi|118617491|ref|YP_905823.1| oxidoreductase [Mycobacterium ulcerans Agy99]
 gi|118569601|gb|ABL04352.1| oxidoreductase [Mycobacterium ulcerans Agy99]
          Length = 159

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 44/111 (39%), Positives = 60/111 (54%)

Query: 60  FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119
                C VE+  A  P YD ER G    ASPR +D ++V G +T  MA  L+      P+
Sbjct: 43  GSCNGCEVEISGAFGPVYDAERVGARLVASPRHADALLVTGVVTRNMAQPLKNTLAATPQ 102

Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGI 170
           PR VI+ G CA   G +  +Y VV     +VPVD+ VPGCPPT + ++  +
Sbjct: 103 PRVVIACGDCALNRGVFADAYGVVGAVSEVVPVDVEVPGCPPTPDQVVAAL 153


>gi|224035581|gb|ACN36866.1| unknown [Zea mays]
          Length = 73

 Score =  112 bits (280), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 58/65 (89%), Positives = 61/65 (93%)

Query: 117 MPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKK 176
           MPEPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG+L LQKK
Sbjct: 1   MPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGVLQLQKK 60

Query: 177 IRRVG 181
           I R  
Sbjct: 61  INRRK 65


>gi|118103240|ref|XP_001234054.1| PREDICTED: hypothetical protein [Gallus gallus]
          Length = 187

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 67/169 (39%), Positives = 80/169 (47%), Gaps = 47/169 (27%)

Query: 17  CSLEKVDADFSRISSEITHKG-FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMP 75
            +  K  A   + S   T +G ++VT +D L+ WAR  SL         C          
Sbjct: 60  QAQPKSSAVVPKKSYVPTSRGEYIVTKLDDLINWARRTSLWPSMLAQQNC---------- 109

Query: 76  RYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY 135
                                         +  AL  +    PE         CANGGGY
Sbjct: 110 -----------------------------HLHPALLGLSAAEPEDG-------CANGGGY 133

Query: 136 YHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
           YHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQKKI+R   ++
Sbjct: 134 YHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKIKRERKLQ 182


>gi|148259651|ref|YP_001233778.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Acidiphilium
           cryptum JF-5]
 gi|146401332|gb|ABQ29859.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Acidiphilium
           cryptum JF-5]
          Length = 164

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 35/127 (27%), Positives = 64/127 (50%), Gaps = 1/127 (0%)

Query: 50  ARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108
            R+ ++  +  G    C +E+      R  +   G A     R +D+++V G  T  +A 
Sbjct: 23  GRSLAVRHVDAGSCGGCEIEIAACRRLRGGMAAHGIAMVEDLRAADILLVTGVATRNLAE 82

Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168
           A+R+    M  PR+V++ G CA  GG +    +V+ G   ++PVD+ + GCPP    ++ 
Sbjct: 83  AVRKSLAGMAPPRFVVAAGDCALDGGVFKGVPAVLGGVQAVIPVDLLIAGCPPAPRQILA 142

Query: 169 GILLLQK 175
           G++ L +
Sbjct: 143 GLVALVE 149


>gi|37718833|gb|AAR01704.1| putative NADH ubiquinone oxidoreductase [Oryza sativa Japonica
           Group]
          Length = 97

 Score =  111 bits (277), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 46/101 (45%), Positives = 59/101 (58%), Gaps = 8/101 (7%)

Query: 47  VTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKM 106
           + WAR GS+  MTFGLAC AVEMM A   RYD +RFG     SPRQSD MI+ GTLTNKM
Sbjct: 1   MNWARRGSIWPMTFGLACFAVEMMHAGASRYDFDRFGVIFHPSPRQSDCMIITGTLTNKM 60

Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCD 147
             ALR+       P + +++ +C      +  S +V+    
Sbjct: 61  VPALRKAL----IPTFNVNLETCHK----FDTSTNVLNAWT 93


>gi|58038760|ref|YP_190724.1| hypothetical protein GOX0285 [Gluconobacter oxydans 621H]
 gi|58001174|gb|AAW60068.1| Hypothetical protein GOX0285 [Gluconobacter oxydans 621H]
          Length = 161

 Score =  110 bits (275), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 32/114 (28%), Positives = 60/114 (52%)

Query: 60  FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119
            G   C +E+   +   + LE+ GF   + P  +D +++ G +T   A  + RV+  MP 
Sbjct: 45  GGCEGCFMEIESLNGSAFALEQAGFVCVSDPADADWLLLTGAVTRVCAEMVDRVWRAMPP 104

Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLL 173
            R +I++G+CA  GG +   Y+ + G + + PV   + GCPP+ + ++  +  L
Sbjct: 105 GRSLIAVGACAVDGGPFPAGYATLGGLEALTPVRRSIAGCPPSPDDILRALQEL 158


>gi|326403379|ref|YP_004283460.1| putative NADH ubiquinone oxidoreductase [Acidiphilium multivorum
           AIU301]
 gi|325050240|dbj|BAJ80578.1| putative NADH ubiquinone oxidoreductase [Acidiphilium multivorum
           AIU301]
          Length = 164

 Score =  110 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 35/127 (27%), Positives = 64/127 (50%), Gaps = 1/127 (0%)

Query: 50  ARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108
            R+ ++  +  G    C +E+      R  +   G A     R +D+++V G  T  +A 
Sbjct: 23  GRSLAVRHVDAGSCGGCEIEIAACRRLRGGMAAQGIAMVEDLRAADILLVTGVATRNLAE 82

Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168
           A+R+    M  PR+V++ G CA  GG +    +V+ G   ++PVD+ + GCPP    ++ 
Sbjct: 83  AVRKSLAGMAPPRFVVAAGDCALDGGVFKGVPAVLGGVQAVIPVDLLIAGCPPAPRQILA 142

Query: 169 GILLLQK 175
           G++ L +
Sbjct: 143 GLVALVE 149


>gi|90186408|gb|ABD91507.1| putative NADH dehydrogenase (ubiquinone) chain PSST precursor
           [Oryza sativa Indica Group]
          Length = 93

 Score =  108 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 45/64 (70%), Positives = 49/64 (76%)

Query: 47  VTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKM 106
           + WAR GS+  MTFGLACCAVEMM A    YDL+RFG   R SPRQSD MI+AGTLTNKM
Sbjct: 1   MNWARRGSIWPMTFGLACCAVEMMHAGASCYDLDRFGVIFRPSPRQSDCMIIAGTLTNKM 60

Query: 107 ASAL 110
           A AL
Sbjct: 61  APAL 64


>gi|164513234|emb|CAP11710.1| NADH dehydrogenase subunit K [Acorus calamus]
 gi|164513236|emb|CAP11711.1| NADH dehydrogenase subunit K [Acorus gramineus]
          Length = 72

 Score =  108 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 35/72 (48%), Positives = 54/72 (75%)

Query: 57  WMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQ 116
            + +G +CC +E       R+D +R+G  PR+SPRQ+D+++ AGT+T KMA +L R+Y+Q
Sbjct: 1   PLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQ 60

Query: 117 MPEPRYVISMGS 128
           MPEP+YVI+MG+
Sbjct: 61  MPEPKYVIAMGA 72


>gi|114329051|ref|YP_746208.1| formate hydrogenlyase subunit 7 [Granulibacter bethesdensis
           CGDNIH1]
 gi|114317225|gb|ABI63285.1| formate hydrogenlyase subunit 7 [Granulibacter bethesdensis
           CGDNIH1]
          Length = 174

 Score =  106 bits (266), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 33/119 (27%), Positives = 60/119 (50%), Gaps = 1/119 (0%)

Query: 55  LMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVY 114
           L   + G + C +E+         L R G     SP  +D++++ G   + + SA+ + +
Sbjct: 49  LHVESGGGSACLLELEALRAAPGLLARHGLRFVTSPLHADILLITGDGCHNLTSAIHQAW 108

Query: 115 DQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLL 173
           + MP PR+ I++G  A G G    SY+     +  +P D+ +PG PP A+ ++ G+  L
Sbjct: 109 EAMPGPRWAIAVGDGAAGDGLLRGSYASTGNMEE-IPFDLVIPGSPPAADTILSGLRAL 166


>gi|255565794|ref|XP_002523886.1| NADH-ubiquinone oxidoreductase I subunit j, putative [Ricinus
           communis]
 gi|223536816|gb|EEF38455.1| NADH-ubiquinone oxidoreductase I subunit j, putative [Ricinus
           communis]
          Length = 188

 Score =  106 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 39/76 (51%), Positives = 55/76 (72%), Gaps = 1/76 (1%)

Query: 106 MASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGCDRIVPVDIYVPGCPPTAE 164
           MA +L R+Y+Q+PEP+YVI+MG+C   GG +   SYS +RG D+++PVD Y+ GCPP  E
Sbjct: 1   MAPSLVRLYEQIPEPKYVIAMGACTITGGMFSTDSYSTIRGVDKLIPVDAYLSGCPPKPE 60

Query: 165 ALIYGILLLQKKIRRV 180
           A+I  I  L+KK+ R 
Sbjct: 61  AVIDAITKLRKKLSRE 76


>gi|48477897|ref|YP_023603.1| formate hydrogenlyase subunit 7 [Picrophilus torridus DSM 9790]
 gi|48430545|gb|AAT43410.1| formate hydrogenlyase subunit 7 [Picrophilus torridus DSM 9790]
          Length = 202

 Score =  105 bits (261), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 34/139 (24%), Positives = 63/139 (45%), Gaps = 11/139 (7%)

Query: 37  GFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDV 95
             +  S+D+   + ++ ++  +  G    C  E+   S+P YDL R+      +PR +D 
Sbjct: 73  SIISGSIDK--KFRKSLNIYSIDSGTCGACNSELFSISIPEYDLTRYHIFFTNTPRHADA 130

Query: 96  MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
           +I++G     M   +      MP+P Y+I +G+CA  GG     +         +   + 
Sbjct: 131 IILSGIYNESMKDVIDNALGAMPKPGYLILLGACALSGGIIGSGHE--------IKAVLE 182

Query: 156 VPGCPPTAEALIYGILLLQ 174
           +PGCPP    ++ G+  L 
Sbjct: 183 IPGCPPNPYTILKGLRRLM 201


>gi|164513246|emb|CAP11716.1| NADH dehydrogenase subunit K [Betula insignis]
 gi|164513248|emb|CAP11717.1| NADH dehydrogenase subunit K [Betula pendula]
          Length = 67

 Score =  104 bits (259), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 35/67 (52%), Positives = 51/67 (76%)

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           G +CC +E       R+D +R+G  PR+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP
Sbjct: 1   GTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEP 60

Query: 121 RYVISMG 127
           +YVI+MG
Sbjct: 61  KYVIAMG 67


>gi|331664272|ref|ZP_08365178.1| formate hydrogenlyase subunit 7 (FHL subunit 7)
           (Hydrogenase-3component G) [Escherichia coli TA143]
 gi|331058203|gb|EGI30184.1| formate hydrogenlyase subunit 7 (FHL subunit 7)
           (Hydrogenase-3component G) [Escherichia coli TA143]
          Length = 171

 Score =  103 bits (258), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 38/87 (43%), Positives = 51/87 (58%), Gaps = 4/87 (4%)

Query: 99  AGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPG 158
            G +T  M S   R +   P+P+  IS G+C N GG +H  Y V  G D+IVPVD+Y+PG
Sbjct: 1   TGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPG 60

Query: 159 CPPTAEALIYGILL----LQKKIRRVG 181
           CPPT  A +YG  +    L++KI   G
Sbjct: 61  CPPTPAATLYGFAMALGLLEQKIHARG 87


>gi|237757076|ref|ZP_04585519.1| NADH-quinone oxidoreductase, chain 6 [Sulfurihydrogenibium
           yellowstonense SS-5]
 gi|237690765|gb|EEP59930.1| NADH-quinone oxidoreductase, chain 6 [Sulfurihydrogenibium
           yellowstonense SS-5]
          Length = 97

 Score =  101 bits (251), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 42/70 (60%), Positives = 59/70 (84%), Gaps = 1/70 (1%)

Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164
           K+A  LR +Y+QMP+P++VISMG CA+GGG +  +YS ++G DRI+PVD+Y+PGCPPT +
Sbjct: 1   KVAPMLRLIYEQMPDPKWVISMGGCASGGGPFP-TYSTLQGVDRIIPVDVYIPGCPPTPQ 59

Query: 165 ALIYGILLLQ 174
           AL++GIL LQ
Sbjct: 60  ALLWGILELQ 69


>gi|183221787|ref|YP_001839783.1| hydrogenase-4 subunit G [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
 gi|189911861|ref|YP_001963416.1| metal (Ni/Fe) hydrogenase small subunit [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Ames)']
 gi|167776537|gb|ABZ94838.1| Metal (Ni/Fe) hydrogenase, small subunit [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Ames)']
 gi|167780209|gb|ABZ98507.1| Hydrogenase-4 subunit G [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
          Length = 273

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 31/116 (26%), Positives = 55/116 (47%), Gaps = 11/116 (9%)

Query: 60  FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119
            G      E+  +    +D ER G    ASP+ +D ++ +G ++ +M   L+  +D + E
Sbjct: 147 GGNNTVESELNASFNSVFDSEREGIRCVASPKHADTIVFSGPISEQMEGPLQTAWDVLSE 206

Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVP--VDIYVPGCPPTAEALIYGILLL 173
           PR +I+ G+ A  GG +             +P   D+Y+ G PP  + ++ G  LL
Sbjct: 207 PRALIACGTEAVSGGLFPKG---------KIPKEPDLYISGDPPRPDVILQGFRLL 253


>gi|148828675|gb|ABR13960.1| NDH-K [Thuja plicata]
          Length = 103

 Score =   99 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 26/82 (31%), Positives = 45/82 (54%)

Query: 20  EKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDL 79
             ++   S +  + T    + T+++ L  WAR  SL  + +G +CC +E       R+D 
Sbjct: 22  PAINPIESSLLHQATPNSVISTTLNDLSNWARLSSLWPLLYGTSCCFIEFASLIGSRFDF 81

Query: 80  ERFGFAPRASPRQSDVMIVAGT 101
           +R+G  PR+SPRQ+D++I   T
Sbjct: 82  DRYGLVPRSSPRQADLLITPPT 103


>gi|218513798|ref|ZP_03510638.1| NADH-ubiquinone oxidoreductase protein, chain B [Rhizobium etli
           8C-3]
          Length = 77

 Score = 99.6 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 39/67 (58%), Positives = 54/67 (80%), Gaps = 1/67 (1%)

Query: 117 MPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKK 176
           MPEPR+VI+MG+CA  GG Y+ +Y+VV+G +  VPVD++VPGCPP  EAL++G LLLQ+K
Sbjct: 1   MPEPRWVIAMGTCAISGGVYN-TYAVVQGSETFVPVDVHVPGCPPRPEALMHGFLLLQEK 59

Query: 177 IRRVGNV 183
           I+R   +
Sbjct: 60  IKRSRAL 66


>gi|289804981|ref|ZP_06535610.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
           serovar Typhi str. AG3]
          Length = 89

 Score = 99.6 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 48/90 (53%), Positives = 64/90 (71%), Gaps = 3/90 (3%)

Query: 66  AVEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
            VEM+ +    +D+ RFG    RASPRQ+D+M+VAGT   KMA  ++R+YDQM EP++VI
Sbjct: 1   YVEMVTSFTAVHDVARFGAEVLRASPRQADLMVVAGTCFTKMAPVIQRLYDQMLEPKWVI 60

Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154
           SMG+CAN GG Y   YSVV+G    +PVD+
Sbjct: 61  SMGACANSGGMY-DIYSVVQGLIS-LPVDV 88


>gi|117927935|ref|YP_872486.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Acidothermus
           cellulolyticus 11B]
 gi|117648398|gb|ABK52500.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Acidothermus
           cellulolyticus 11B]
          Length = 269

 Score = 98.1 bits (243), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 38/116 (32%), Positives = 53/116 (45%), Gaps = 18/116 (15%)

Query: 66  AVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVIS 125
             E++    P YD+ R G    ASPR +DV++V G  +  MA+ L R     P P  VI+
Sbjct: 139 EWEVLALLNPVYDIHRLGIFFTASPRHADVLLVTGVGSRGMAAPLARTLQAAPRPLVVIA 198

Query: 126 MGSCANGGGYYHYSYSVVRGCDRIVP------------------VDIYVPGCPPTA 163
            G+ A  GG  H +Y+   G   ++                   VDI+VPG PPT 
Sbjct: 199 AGTDAISGGLVHPTYATSGGIGDLIAATPDSAGATGAADGDPVRVDIWVPGSPPTP 254


>gi|300951811|ref|ZP_07165624.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 116-1]
 gi|300448958|gb|EFK12578.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 116-1]
          Length = 116

 Score = 96.1 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 26/75 (34%), Positives = 40/75 (53%)

Query: 60  FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119
            G   C +E+  A  P +D ERFG    +SPR +D+++  G +T  M     R Y+  P+
Sbjct: 42  GGCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMRMPALRAYESAPD 101

Query: 120 PRYVISMGSCANGGG 134
            +  +S G+C  GGG
Sbjct: 102 HKICVSYGACGVGGG 116


>gi|164513262|emb|CAP11724.1| NADH dehydrogenase subunit K [Paeonia kavachensis]
 gi|164513264|emb|CAP11725.1| NADH dehydrogenase [Paeonia tenuifolia]
 gi|164513266|emb|CAP11726.1| NADH dehydrogenase [Sophora microphylla]
 gi|164513268|emb|CAP11727.1| NADH dehydrogenase [Sophora toromiro]
          Length = 63

 Score = 96.1 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 29/63 (46%), Positives = 45/63 (71%)

Query: 57  WMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQ 116
            + +G +CC +E       R+D +R+G  PR+SPRQ+D+++ AGT+T KMA +L R+Y+Q
Sbjct: 1   PLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQ 60

Query: 117 MPE 119
           MPE
Sbjct: 61  MPE 63


>gi|300820847|ref|ZP_07100997.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 119-7]
 gi|331669229|ref|ZP_08370077.1| hydrogenase-4 component I [Escherichia coli TA271]
 gi|331678474|ref|ZP_08379149.1| hydrogenase-4 component I [Escherichia coli H591]
 gi|300526600|gb|EFK47669.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 119-7]
 gi|331064423|gb|EGI36334.1| hydrogenase-4 component I [Escherichia coli TA271]
 gi|331074934|gb|EGI46254.1| hydrogenase-4 component I [Escherichia coli H591]
          Length = 173

 Score = 95.0 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 26/76 (34%), Positives = 41/76 (53%)

Query: 60  FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119
            G   C +E+  A  P +D ERFG    +SPR +D+++  G +T  M     R Y+  P+
Sbjct: 42  GGCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMRMPALRAYESAPD 101

Query: 120 PRYVISMGSCANGGGY 135
            +  +S G+C  GGG+
Sbjct: 102 HKICVSYGACGAGGGF 117


>gi|323177391|gb|EFZ62979.1| hydrogenase-4 component I [Escherichia coli 1180]
          Length = 170

 Score = 95.0 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 26/76 (34%), Positives = 41/76 (53%)

Query: 60  FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119
            G   C +E+  A  P +D ERFG    +SPR +D+++  G +T  M     R Y+  P+
Sbjct: 39  GGCNACEIEIFAAITPVFDAERFGIKVISSPRHADILLFTGAVTRAMRMPALRAYESAPD 98

Query: 120 PRYVISMGSCANGGGY 135
            +  +S G+C  GGG+
Sbjct: 99  HKICVSYGACGAGGGF 114


>gi|256017364|ref|ZP_05431229.1| hydrogenase 4, Fe-S subunit [Shigella sp. D9]
 gi|323156092|gb|EFZ42251.1| hydrogenase-4 component I [Escherichia coli EPECa14]
 gi|323944709|gb|EGB40776.1| NADH ubiquinone oxidoreductase [Escherichia coli H120]
          Length = 173

 Score = 94.6 bits (234), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 26/76 (34%), Positives = 41/76 (53%)

Query: 60  FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119
            G   C +E+  A  P +D ERFG    +SPR +D+++  G +T  M     R Y+  P+
Sbjct: 42  GGCNACEIEIFAAITPVFDAERFGIKVISSPRHADILLFTGAVTRAMRMPALRAYESAPD 101

Query: 120 PRYVISMGSCANGGGY 135
            +  +S G+C  GGG+
Sbjct: 102 HKICVSYGACGAGGGF 117


>gi|307312517|ref|ZP_07592150.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Escherichia coli W]
 gi|306907440|gb|EFN37944.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Escherichia coli W]
 gi|323184454|gb|EFZ69829.1| hydrogenase-4 component I [Escherichia coli 1357]
          Length = 173

 Score = 94.6 bits (234), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 26/76 (34%), Positives = 41/76 (53%)

Query: 60  FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119
            G   C +E+  A  P +D ERFG    +SPR +D+++  G +T  M     R Y+  P+
Sbjct: 42  GGCNACEIEIFAAITPVFDAERFGIKVISSPRHADILLFTGAVTRAMRMPALRAYESAPD 101

Query: 120 PRYVISMGSCANGGGY 135
            +  +S G+C  GGG+
Sbjct: 102 HKICVSYGACGAGGGF 117


>gi|164513258|emb|CAP11722.1| NADH dehydrogenase subunit K [Hieracium leyianum]
 gi|164513260|emb|CAP11723.1| NADH dehydrogenase subunit K [Hieracium pellucidum]
          Length = 61

 Score = 94.2 bits (233), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 29/60 (48%), Positives = 44/60 (73%)

Query: 60  FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119
           +G +CC +E       R+D +R+G  PR+SPRQ+D+++ AGT+T KMA +L R+Y+QMPE
Sbjct: 2   YGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPE 61


>gi|73658458|emb|CAI99039.1| NADH dehydrogenase 32 kD subunit [Arabidopsis thaliana]
 gi|73658460|emb|CAI99042.1| NADH dehydrogenase 32 kD subunit [Arabidopsis thaliana]
          Length = 114

 Score = 93.1 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 33/61 (54%), Positives = 44/61 (72%), Gaps = 1/61 (1%)

Query: 121 RYVISMGSCANGGGYYH-YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
           +YVI+MG+C   GG +   SYS VRG D+++PVD+Y+PGCPP  EA+I  I  L+KKI R
Sbjct: 1   KYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKKIAR 60

Query: 180 V 180
            
Sbjct: 61  E 61


>gi|164513250|emb|CAP11718.1| NADH dehydrogenase subunit K [Coffea mauritiana]
 gi|164513252|emb|CAP11719.1| NADH dehydrogenase subunit K [Coffea myrtifolia]
          Length = 61

 Score = 92.3 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 32/61 (52%), Positives = 47/61 (77%)

Query: 67  VEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISM 126
           +E       R+D +R+G  PR+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+M
Sbjct: 1   MEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAM 60

Query: 127 G 127
           G
Sbjct: 61  G 61


>gi|308375059|ref|ZP_07667937.1| oxidoreductase [Mycobacterium tuberculosis SUMu007]
 gi|308347618|gb|EFP36469.1| oxidoreductase [Mycobacterium tuberculosis SUMu007]
          Length = 143

 Score = 91.5 bits (226), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 32/76 (42%), Positives = 41/76 (53%)

Query: 60  FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119
                C VE+  A  P YD ERFG    ASPR +D ++V G +T+ MA  LR+  +  P 
Sbjct: 31  GSCNGCEVEISGAFGPVYDAERFGARLVASPRHADALLVTGVVTHNMAGPLRKTLEATPR 90

Query: 120 PRYVISMGSCANGGGY 135
           PR VI+ G CA   G 
Sbjct: 91  PRVVIACGDCALNRGC 106


>gi|164513238|emb|CAP11712.1| NADH dehydrogenase subunit K [Aglaia korthalsii]
 gi|164513240|emb|CAP11713.1| NADH dehydrogenase subunit K [Aglaia odoratissima]
          Length = 60

 Score = 91.1 bits (225), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 31/60 (51%), Positives = 46/60 (76%)

Query: 67  VEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISM 126
           +E       R+D +R+G  PR+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+M
Sbjct: 1   IEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAM 60


>gi|327333152|gb|EGE74879.1| NADH dehydrogenase subunit [Propionibacterium acnes HL097PA1]
          Length = 132

 Score = 90.4 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 40/125 (32%), Positives = 59/125 (47%), Gaps = 8/125 (6%)

Query: 45  QLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTN 104
           + + W   GS+  +   LACC VE   A      +      P  +P    V++V+GT+T 
Sbjct: 2   KFIDWFADGSVYVVDLALACCGVESGAAVSANAPVREE--IPDGAPI---VVLVSGTVTT 56

Query: 105 KMASALRRVYDQMP--EPRYVISMGSCANGGGYYHYSYSVVRGC-DRIVPVDIYVPGCPP 161
            +A  +     ++    P  V++ G+CA  GG Y  S  VV G  D  V  D ++PGCPP
Sbjct: 57  GLAPVVSDTVHELKRNHPVDVVAFGACACAGGPYWDSAGVVAGLPDAGVDADHWIPGCPP 116

Query: 162 TAEAL 166
             E L
Sbjct: 117 GPETL 121


>gi|116326949|ref|YP_796669.1| metal (Ni/Fe) hydrogenase, small subunit [Leptospira borgpetersenii
           serovar Hardjo-bovis L550]
 gi|116332385|ref|YP_802103.1| metal (Ni/Fe) hydrogenase, small subunit [Leptospira borgpetersenii
           serovar Hardjo-bovis JB197]
 gi|116119693|gb|ABJ77736.1| Metal (Ni/Fe) hydrogenase, small subunit [Leptospira borgpetersenii
           serovar Hardjo-bovis L550]
 gi|116126074|gb|ABJ77345.1| Metal (Ni/Fe) hydrogenase, small subunit [Leptospira borgpetersenii
           serovar Hardjo-bovis JB197]
          Length = 273

 Score = 90.0 bits (222), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 25/114 (21%), Positives = 48/114 (42%), Gaps = 7/114 (6%)

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           G      E+  +    +D E       ASP+ +D ++ +G +   M   L   ++ MP P
Sbjct: 145 GNNTTEAEINASFNALFDSEASKIRVVASPKHADALVYSGPVGPNMEEPLNTAWETMPSP 204

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQ 174
           + +++ GS A  GG +      +    +    D+++ G PP  + +I     L 
Sbjct: 205 KALVACGSEAVSGGLFK-----LGKLPK--EPDLFIGGDPPRPDVIISAFRYLM 251


>gi|50843355|ref|YP_056582.1| NADH dehydrogenase subunit [Propionibacterium acnes KPA171202]
 gi|289424815|ref|ZP_06426597.1| NADH ubiquinone oxidoreductase, 20 Kd subunit [Propionibacterium
           acnes SK187]
 gi|289427723|ref|ZP_06429435.1| NADH ubiquinone oxidoreductase, 20 Kd subunit [Propionibacterium
           acnes J165]
 gi|295131426|ref|YP_003582089.1| NADH ubiquinone oxidoreductase, 20 Kd subunit [Propionibacterium
           acnes SK137]
 gi|50840957|gb|AAT83624.1| NADH dehydrogenase subunit [Propionibacterium acnes KPA171202]
 gi|289154778|gb|EFD03461.1| NADH ubiquinone oxidoreductase, 20 Kd subunit [Propionibacterium
           acnes SK187]
 gi|289159214|gb|EFD07406.1| NADH ubiquinone oxidoreductase, 20 Kd subunit [Propionibacterium
           acnes J165]
 gi|291376669|gb|ADE00524.1| NADH ubiquinone oxidoreductase, 20 Kd subunit [Propionibacterium
           acnes SK137]
 gi|313763090|gb|EFS34454.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes
           HL013PA1]
 gi|313773016|gb|EFS38982.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes
           HL074PA1]
 gi|313794097|gb|EFS42119.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes
           HL110PA1]
 gi|313802411|gb|EFS43636.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes
           HL110PA2]
 gi|313807856|gb|EFS46340.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes
           HL087PA2]
 gi|313812031|gb|EFS49745.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes
           HL083PA1]
 gi|313812142|gb|EFS49856.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes
           HL025PA1]
 gi|313816888|gb|EFS54602.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes
           HL059PA1]
 gi|313819192|gb|EFS56906.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes
           HL046PA2]
 gi|313819769|gb|EFS57483.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes
           HL036PA1]
 gi|313823886|gb|EFS61600.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes
           HL036PA2]
 gi|313827247|gb|EFS64961.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes
           HL063PA1]
 gi|313828423|gb|EFS66137.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes
           HL063PA2]
 gi|313831120|gb|EFS68834.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes
           HL007PA1]
 gi|313833477|gb|EFS71191.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes
           HL056PA1]
 gi|313838111|gb|EFS75825.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes
           HL086PA1]
 gi|314914551|gb|EFS78382.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes
           HL005PA4]
 gi|314919205|gb|EFS83036.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes
           HL050PA1]
 gi|314920639|gb|EFS84470.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes
           HL050PA3]
 gi|314925722|gb|EFS89553.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes
           HL036PA3]
 gi|314931451|gb|EFS95282.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes
           HL067PA1]
 gi|314957011|gb|EFT01117.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes
           HL027PA1]
 gi|314957825|gb|EFT01928.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes
           HL002PA1]
 gi|314960666|gb|EFT04767.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes
           HL002PA2]
 gi|314963378|gb|EFT07478.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes
           HL082PA1]
 gi|314969727|gb|EFT13825.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes
           HL037PA1]
 gi|314974302|gb|EFT18398.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes
           HL053PA1]
 gi|314976926|gb|EFT21021.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes
           HL045PA1]
 gi|314979886|gb|EFT23980.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes
           HL072PA2]
 gi|314985816|gb|EFT29908.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes
           HL005PA1]
 gi|314988401|gb|EFT32492.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes
           HL005PA2]
 gi|314988825|gb|EFT32916.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes
           HL005PA3]
 gi|315077114|gb|EFT49189.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes
           HL053PA2]
 gi|315084887|gb|EFT56863.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes
           HL027PA2]
 gi|315087244|gb|EFT59220.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes
           HL002PA3]
 gi|315088977|gb|EFT60953.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes
           HL072PA1]
 gi|315096825|gb|EFT68801.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes
           HL038PA1]
 gi|315100090|gb|EFT72066.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes
           HL059PA2]
 gi|315100586|gb|EFT72562.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes
           HL046PA1]
 gi|315106026|gb|EFT78002.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes
           HL030PA1]
 gi|315109357|gb|EFT81333.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes
           HL030PA2]
 gi|327325634|gb|EGE67432.1| NADH dehydrogenase subunit [Propionibacterium acnes HL096PA2]
 gi|327328228|gb|EGE69995.1| NADH dehydrogenase subunit [Propionibacterium acnes HL096PA3]
 gi|327445304|gb|EGE91958.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes
           HL043PA1]
 gi|327446944|gb|EGE93598.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes
           HL043PA2]
 gi|327449059|gb|EGE95713.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes
           HL013PA2]
 gi|327451405|gb|EGE98059.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes
           HL092PA1]
 gi|327452595|gb|EGE99249.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes
           HL087PA3]
 gi|327457638|gb|EGF04293.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes
           HL083PA2]
 gi|328751922|gb|EGF65538.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes
           HL087PA1]
 gi|328756933|gb|EGF70549.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes
           HL020PA1]
 gi|328759054|gb|EGF72670.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes
           HL025PA2]
 gi|328762245|gb|EGF75737.1| NADH dehydrogenase subunit [Propionibacterium acnes HL099PA1]
 gi|332676294|gb|AEE73110.1| NADH dehydrogenase subunit [Propionibacterium acnes 266]
          Length = 132

 Score = 90.0 bits (222), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 40/125 (32%), Positives = 60/125 (48%), Gaps = 8/125 (6%)

Query: 45  QLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTN 104
           + + W   GS+  +   LACC VE   A +    +      P  +P    V++V+GT+T 
Sbjct: 2   KFIDWFADGSVYVVDLALACCGVESGAAVLANAPVREE--IPDGAPI---VVLVSGTVTT 56

Query: 105 KMASALRRVYDQMP--EPRYVISMGSCANGGGYYHYSYSVVRGC-DRIVPVDIYVPGCPP 161
            +A  +     ++    P  V++ G+CA  GG Y  S  VV G  D  V  D ++PGCPP
Sbjct: 57  GLAPVVSDTVHELKRNHPVDVVAFGACACAGGPYWDSAGVVAGLPDAGVDADHWIPGCPP 116

Query: 162 TAEAL 166
             E L
Sbjct: 117 GPETL 121


>gi|314924059|gb|EFS87890.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes
           HL001PA1]
 gi|314965030|gb|EFT09129.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes
           HL082PA2]
 gi|314983106|gb|EFT27198.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes
           HL110PA3]
 gi|315090649|gb|EFT62625.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes
           HL110PA4]
 gi|315093837|gb|EFT65813.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes
           HL060PA1]
 gi|315104055|gb|EFT76031.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes
           HL050PA2]
 gi|327326472|gb|EGE68261.1| NADH dehydrogenase subunit [Propionibacterium acnes HL103PA1]
          Length = 132

 Score = 89.6 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 41/125 (32%), Positives = 59/125 (47%), Gaps = 8/125 (6%)

Query: 45  QLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTN 104
           + + W   GS+  +   LACC VE   A      +      P  +P    V+ V+GT+T 
Sbjct: 2   KFIDWFADGSVYVVDLALACCGVESGAAVSANAPVREE--IPDGAPI---VVFVSGTVTT 56

Query: 105 KMASALRRVYDQMP--EPRYVISMGSCANGGGYYHYSYSVVRGC-DRIVPVDIYVPGCPP 161
            +A  +R    ++    P  V++ G+CA  GG Y  S  VV G  D  V  D ++PGCPP
Sbjct: 57  GLAPVVRDTVGELKRNHPVDVVAFGACACAGGPYWDSAGVVAGLPDAGVDADHWIPGCPP 116

Query: 162 TAEAL 166
             E L
Sbjct: 117 GPETL 121


>gi|108708858|gb|ABF96653.1| NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial
           precursor, putative [Oryza sativa Japonica Group]
          Length = 86

 Score = 89.2 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 41/90 (45%), Positives = 52/90 (57%), Gaps = 8/90 (8%)

Query: 58  MTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQM 117
           MTFGLAC AVEMM A   RYD +RFG     SPRQSD MI+ GTLTNKM  ALR+     
Sbjct: 1   MTFGLACFAVEMMHAGASRYDFDRFGVIFHPSPRQSDCMIITGTLTNKMVPALRKAL--- 57

Query: 118 PEPRYVISMGSCANGGGYYHYSYSVVRGCD 147
             P + +++ +C      +  S +V+    
Sbjct: 58  -IPTFNVNLETCHK----FDTSTNVLNAWT 82


>gi|282855245|ref|ZP_06264577.1| NADH ubiquinone oxidoreductase, 20 Kd subunit [Propionibacterium
           acnes J139]
 gi|282581833|gb|EFB87218.1| NADH ubiquinone oxidoreductase, 20 Kd subunit [Propionibacterium
           acnes J139]
          Length = 132

 Score = 89.2 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 41/125 (32%), Positives = 59/125 (47%), Gaps = 8/125 (6%)

Query: 45  QLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTN 104
           + + W   GS+  +   LACC VE   A      +      P  +P    V+ V+GT+T 
Sbjct: 2   KFIDWFADGSVYVVDLALACCGVESGAAVSANAPVREE--IPDGAPI---VVFVSGTVTT 56

Query: 105 KMASALRRVYDQMP--EPRYVISMGSCANGGGYYHYSYSVVRGC-DRIVPVDIYVPGCPP 161
            +A  +R    ++    P  V++ G+CA  GG Y  S  VV G  D  V  D ++PGCPP
Sbjct: 57  GLAPVVRDTVGELKRNHPVDVMAFGACACAGGPYWDSAGVVAGLPDAGVDADHWIPGCPP 116

Query: 162 TAEAL 166
             E L
Sbjct: 117 GPETL 121


>gi|302421904|ref|XP_003008782.1| NADH-ubiquinone oxidoreductase 20 kDa subunit [Verticillium
           albo-atrum VaMs.102]
 gi|261351928|gb|EEY14356.1| NADH-ubiquinone oxidoreductase 20 kDa subunit [Verticillium
           albo-atrum VaMs.102]
          Length = 67

 Score = 87.3 bits (215), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 45/79 (56%), Positives = 53/79 (67%), Gaps = 17/79 (21%)

Query: 106 MASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEA 165
           MA ALR+VYDQMPEPR                  Y+VVRGCDRIVPVD+YVPGCPPT+EA
Sbjct: 1   MAPALRQVYDQMPEPR-----------------CYAVVRGCDRIVPVDVYVPGCPPTSEA 43

Query: 166 LIYGILLLQKKIRRVGNVK 184
           L+YGI  LQ+K+R     +
Sbjct: 44  LMYGIFQLQRKMRNTKITR 62


>gi|164513242|emb|CAP11714.1| NADH dehydrogenase subunit K [Begonia conchifolia]
 gi|164513244|emb|CAP11715.1| NADH dehydrogenase subunit K [Begonia plagioneura]
          Length = 56

 Score = 87.3 bits (215), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 31/56 (55%), Positives = 45/56 (80%)

Query: 72  ASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMG 127
               R+D +R+G  PR+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG
Sbjct: 1   LIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMG 56


>gi|24216977|ref|NP_714458.1| metal (Ni/Fe) hydrogenase small subunit [Leptospira interrogans
           serovar Lai str. 56601]
 gi|24198376|gb|AAN51476.1| metal (Ni/Fe) hydrogenase small subunit [Leptospira interrogans
           serovar Lai str. 56601]
          Length = 273

 Score = 86.9 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 24/114 (21%), Positives = 48/114 (42%), Gaps = 7/114 (6%)

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           G      E+  +    +D E       ASP+ +D ++ +G +   M   L   ++ MP P
Sbjct: 145 GNNTTEAEINASFNALFDSEASKIRVVASPKHADALVYSGPVGPNMEGPLDTAWETMPSP 204

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQ 174
           + +++ GS A  GG +      +    +    D+++ G PP  + ++     L 
Sbjct: 205 KALVACGSEAVSGGLFK-----LGKLPK--QPDLFIGGDPPRPDVIVSAFRYLM 251


>gi|45659241|ref|YP_003327.1| hydrogenase subunit [Leptospira interrogans serovar Copenhageni
           str. Fiocruz L1-130]
 gi|45602487|gb|AAS71964.1| hydrogenase subunit [Leptospira interrogans serovar Copenhageni
           str. Fiocruz L1-130]
          Length = 273

 Score = 86.5 bits (213), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 24/114 (21%), Positives = 48/114 (42%), Gaps = 7/114 (6%)

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           G      E+  +    +D E       ASP+ +D ++ +G +   M   L   ++ MP P
Sbjct: 145 GNNTTEAEINASFNALFDSEASKIRVVASPKHADALVYSGPVGPNMEGPLDTAWETMPSP 204

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQ 174
           + +++ GS A  GG +      +    +    D+++ G PP  + ++     L 
Sbjct: 205 KALVACGSEAVSGGLFK-----LGKLPK--QPDLFIGGDPPRPDVIVSAFRYLM 251


>gi|224538212|ref|ZP_03678751.1| hypothetical protein BACCELL_03103 [Bacteroides cellulosilyticus
          DSM 14838]
 gi|224520144|gb|EEF89249.1| hypothetical protein BACCELL_03103 [Bacteroides cellulosilyticus
          DSM 14838]
          Length = 91

 Score = 86.5 bits (213), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 3/73 (4%)

Query: 22 VDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDL 79
           +    ++  E+   G    +  +D  + W R+ SL  +TF  +CC +E M     RYD+
Sbjct: 19 DNETLEKLVRELNAGGANVALGVLDDFINWGRSNSLWPLTFATSCCGIEFMALGAARYDM 78

Query: 80 ERFGFAP-RASPR 91
           RFGF   RASPR
Sbjct: 79 ARFGFEVARASPR 91


>gi|222625140|gb|EEE59272.1| hypothetical protein OsJ_11297 [Oryza sativa Japonica Group]
          Length = 89

 Score = 85.7 bits (211), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 38/61 (62%), Positives = 41/61 (67%)

Query: 58  MTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQM 117
           MTFGLAC AVEMM A   RYD +RFG     SPRQSD MI+ GTLTNKM  ALR+     
Sbjct: 1   MTFGLACFAVEMMHAGASRYDFDRFGVIFHPSPRQSDCMIITGTLTNKMVPALRKSVHLP 60

Query: 118 P 118
           P
Sbjct: 61  P 61


>gi|213863448|ref|ZP_03386703.1| hydrogenase activity [Salmonella enterica subsp. enterica serovar
           Typhi str. M223]
          Length = 72

 Score = 85.4 bits (210), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 28/71 (39%), Positives = 39/71 (54%)

Query: 77  YDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY 136
           +D ERFG     SPR +D+++  G +T  M S   R +   P+P+  IS G+C N GG +
Sbjct: 2   FDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIF 61

Query: 137 HYSYSVVRGCD 147
           H  Y V  G D
Sbjct: 62  HDLYCVWGGTD 72


>gi|313836232|gb|EFS73946.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes
           HL037PA2]
 gi|314927669|gb|EFS91500.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes
           HL044PA1]
 gi|314971332|gb|EFT15430.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes
           HL037PA3]
 gi|328906272|gb|EGG26047.1| NADH ubiquinone oxidoreductase, 20 Kd subunit [Propionibacterium
           sp. P08]
          Length = 132

 Score = 84.6 bits (208), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 42/125 (33%), Positives = 63/125 (50%), Gaps = 8/125 (6%)

Query: 45  QLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTN 104
           + + W   GS+  +   LACC VE    ++P     R      A+     V+ V+GT+T 
Sbjct: 2   KFIDWFADGSVYVVDLALACCGVESE-VAVPATAAVREEIPDGAAI----VVFVSGTVTT 56

Query: 105 KMASALRRVYDQMP--EPRYVISMGSCANGGGYYHYSYSVVRGC-DRIVPVDIYVPGCPP 161
            +ASA+R   D++    P  V++ G+CA  GG Y  S  V  G  D  +  D ++PGCPP
Sbjct: 57  GLASAVRVTVDELKRNHPVDVVAFGACACAGGPYWDSAGVAAGLPDAGLDADHWIPGCPP 116

Query: 162 TAEAL 166
             +AL
Sbjct: 117 GPDAL 121


>gi|303254845|ref|ZP_07340933.1| formate hydrogenlyase, subunit G [Streptococcus pneumoniae BS455]
 gi|302598192|gb|EFL65250.1| formate hydrogenlyase, subunit G [Streptococcus pneumoniae BS455]
          Length = 106

 Score = 84.2 bits (207), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 1/77 (1%)

Query: 46  LVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTN 104
           L    R+  +  +  G    C +E+     P +D ERFG    ASPR +D+++  G +T 
Sbjct: 30  LKNIQRSAYVYRVDCGGCNGCEIEIFSTITPTFDAERFGIKVVASPRHADILLFTGAVTR 89

Query: 105 KMASALRRVYDQMPEPR 121
            M +   R Y   P+P+
Sbjct: 90  AMRTPAMRAYQAAPDPK 106


>gi|218661622|ref|ZP_03517552.1| NADH dehydrogenase subunit B [Rhizobium etli IE4771]
          Length = 74

 Score = 81.9 bits (201), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 38/68 (55%), Positives = 47/68 (69%)

Query: 3  LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62
          +    + II   +   +   DA F  I++E+  KGFLVTS D+L+ WARTGSLMWMTFGL
Sbjct: 7  VAQQPKGIIDPSTGKPIGSNDAFFGEINNELADKGFLVTSTDELINWARTGSLMWMTFGL 66

Query: 63 ACCAVEMM 70
          ACCAVEMM
Sbjct: 67 ACCAVEMM 74


>gi|241753592|ref|XP_002401137.1| NADH-plastoquinone oxidoreductase, putative [Ixodes scapularis]
 gi|215508356|gb|EEC17810.1| NADH-plastoquinone oxidoreductase, putative [Ixodes scapularis]
          Length = 162

 Score = 81.5 bits (200), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 44/50 (88%), Positives = 47/50 (94%)

Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPG 158
             R+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRI+PVDIYVPG
Sbjct: 76  WGRKVYDQMLEPRWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVPG 125


>gi|330993943|ref|ZP_08317873.1| Formate hydrogenlyase subunit 7 [Gluconacetobacter sp. SXCC-1]
 gi|329758889|gb|EGG75403.1| Formate hydrogenlyase subunit 7 [Gluconacetobacter sp. SXCC-1]
          Length = 166

 Score = 80.7 bits (198), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 30/114 (26%), Positives = 55/114 (48%), Gaps = 1/114 (0%)

Query: 59  TFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMP 118
           T G   C +E+   S    D         ++PRQ+ ++++ G+L+ +MA  +   +  MP
Sbjct: 42  TGGCTGCGLELRAVSRA-LDAGNAAIRFVSTPRQAGLLLLTGSLSVEMAPVVELAWQAMP 100

Query: 119 EPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILL 172
             R +  +G CA  GG +  SY+V+ G        + +PGCPP    ++  ++ 
Sbjct: 101 GSRLLAVVGDCAVDGGVFTPSYAVLGGVGGRAQASLSLPGCPPAPAMILEALIR 154


>gi|213028132|ref|ZP_03342579.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
           enterica serovar Typhi str. 404ty]
          Length = 102

 Score = 79.6 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 20/84 (23%), Positives = 33/84 (39%), Gaps = 1/84 (1%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPR 91
              +         L    R+  +  +  G    C +E+     P +D ERFG     SPR
Sbjct: 18  TVDESIASMKASLLKNIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPR 77

Query: 92  QSDVMIVAGTLTNKMASALRRVYD 115
            +D+++  G +T  M S   R + 
Sbjct: 78  HADILLFTGAVTRAMRSPALRAWQ 101


>gi|164513254|emb|CAP11720.1| NADH dehydrogenase subunit K [Dioscorea bulbifera]
 gi|164513256|emb|CAP11721.1| NADH dehydrogenase subunit K [Dioscorea schimperiana]
          Length = 52

 Score = 79.6 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 30/52 (57%), Positives = 44/52 (84%)

Query: 78  DLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSC 129
           D +R+G  PR+SPRQ+D+++ AGT+T KMA +L R+Y+QM EP+YVI+MG+C
Sbjct: 1   DFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMAEPKYVIAMGAC 52


>gi|89671|pir||PX0053 NADH2 dehydrogenase (ubiquinone) (EC 1.6.5.3) 20K chain - bovine
           (fragments)
          Length = 96

 Score = 78.8 bits (193), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 45/52 (86%), Positives = 47/52 (90%), Gaps = 4/52 (7%)

Query: 110 LRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP 161
           L +VYDQMPEPRYV+SMGSCANGGGYYHYSYSVVR    IVPVDIYVPGCPP
Sbjct: 36  LIKVYDQMPEPRYVVSMGSCANGGGYYHYSYSVVR----IVPVDIYVPGCPP 83


>gi|332295900|ref|YP_004437823.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Thermodesulfobium
           narugense DSM 14796]
 gi|332179003|gb|AEE14692.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Thermodesulfobium
           narugense DSM 14796]
          Length = 155

 Score = 77.3 bits (189), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 25/100 (25%), Positives = 45/100 (45%), Gaps = 2/100 (2%)

Query: 49  WARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMA 107
           + R+  +  +  G       E+     P+Y+L R G     +PR++D++IV G  T KM 
Sbjct: 33  FKRSIHIFCIDVGNDNALNFEIFALLSPKYNLHRLGIFFTQTPREADLLIVLGRPTEKMV 92

Query: 108 SALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146
             +    +QMPEP  V+   +   G  + +    +V+   
Sbjct: 93  PLMLEAINQMPEPFGVLLTENNDLGLSFDNFDIPNVIGHI 132


>gi|1396038|dbj|BAA07792.1| ndhK [Anthoceros formosae]
          Length = 80

 Score = 76.9 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 29/57 (50%)

Query: 27 SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFG 83
          S +  E T    ++T+ +    WAR  SL  + +G +CC +E       R+D +R+G
Sbjct: 24 SSLPDETTSDSTILTTFNDFSNWARLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYG 80


>gi|213026204|ref|ZP_03340651.1| hydrogenase activity [Salmonella enterica subsp. enterica serovar
           Typhi str. 404ty]
          Length = 58

 Score = 75.7 bits (185), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 28/53 (52%), Positives = 36/53 (67%)

Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILL 172
           P+  IS G+C N GG +H  Y V  G D+IVPVD+Y+PGCPPT  A +YG  +
Sbjct: 5   PKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAM 57


>gi|333001062|gb|EGK20632.1| ech hydrogenase subunit C [Shigella flexneri K-272]
 gi|333015433|gb|EGK34772.1| ech hydrogenase subunit C [Shigella flexneri K-227]
          Length = 99

 Score = 75.0 bits (183), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 32/82 (39%), Gaps = 1/82 (1%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPR 91
              +         L    R+  +  +  G    C +E+     P +D ERFG     SPR
Sbjct: 18  TVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPR 77

Query: 92  QSDVMIVAGTLTNKMASALRRV 113
            +D+++  G +T  M S   R 
Sbjct: 78  HADILLFTGAVTRAMRSPALRA 99


>gi|300903499|ref|ZP_07121424.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 84-1]
 gi|301302841|ref|ZP_07208969.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 124-1]
 gi|300404531|gb|EFJ88069.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 84-1]
 gi|300841776|gb|EFK69536.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 124-1]
 gi|315256505|gb|EFU36473.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 85-1]
          Length = 133

 Score = 75.0 bits (183), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 26/48 (54%)

Query: 60  FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMA 107
            G   C +E+  A  P +D ERFG    +SPR +D+++  G +T  M 
Sbjct: 42  GGCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMR 89


>gi|315079804|gb|EFT51780.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes
           HL078PA1]
          Length = 132

 Score = 73.8 bits (180), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 41/125 (32%), Positives = 60/125 (48%), Gaps = 8/125 (6%)

Query: 45  QLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTN 104
           + + W   GS+  +   LACC VE   A +    + R    P  +P    V++V+GT+T 
Sbjct: 2   KFIDWFADGSVYVVDLALACCGVESGAAVLANAPV-REEI-PDGAPI---VVLVSGTVTT 56

Query: 105 KMASALRRVYDQMP--EPRYVISMGSCANGGGYYHYSYSVVRGC-DRIVPVDIYVPGCPP 161
            +A  +     ++    P  V + G+CA  GG Y  S  VV G  D  V  D ++PGCPP
Sbjct: 57  GLAPVVSDTVHELKRNHPVDVAAFGACACAGGPYWDSAGVVAGLPDAGVDADHWIPGCPP 116

Query: 162 TAEAL 166
             E L
Sbjct: 117 GPETL 121


>gi|149377240|ref|ZP_01894987.1| NADH dehydrogenase subunit B [Marinobacter algicola DG893]
 gi|149358428|gb|EDM46903.1| NADH dehydrogenase subunit B [Marinobacter algicola DG893]
          Length = 81

 Score = 73.4 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 22/67 (32%), Positives = 28/67 (41%)

Query: 17 CSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPR 76
             E  +    R        G L   ++  V W R  SL    FGL+CC VEM  A    
Sbjct: 15 RQQEPSEDPVKRQLERNVFTGKLSDVLNSAVNWGRKNSLWPYNFGLSCCYVEMTTAFTAP 74

Query: 77 YDLERFG 83
          +D+ RFG
Sbjct: 75 HDIARFG 81


>gi|303245121|ref|ZP_07331437.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanothermococcus
           okinawensis IH1]
 gi|302484504|gb|EFL47452.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanothermococcus
           okinawensis IH1]
          Length = 160

 Score = 71.5 bits (174), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 23/97 (23%), Positives = 47/97 (48%), Gaps = 9/97 (9%)

Query: 85  APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS----- 139
             R  P   D+ +V G +      +++ + +   + + V+++G+CA  GG   YS     
Sbjct: 57  IERKIPDNIDIALVEGAVCLDDEHSIKDILETRKKAKIVVALGACAATGGVLRYSRGGQM 116

Query: 140 ----YSVVRGCDRIVPVDIYVPGCPPTAEALIYGILL 172
               ++       ++ VD+ +PGCPP+ E ++  I+L
Sbjct: 117 SKPAHASYVAVGDVIKVDLAIPGCPPSPETIVKVIIL 153


>gi|327399463|ref|YP_004340332.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Hippea maritima DSM
           10411]
 gi|327182092|gb|AEA34273.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Hippea maritima DSM
           10411]
          Length = 153

 Score = 71.1 bits (173), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 50/121 (41%), Gaps = 10/121 (8%)

Query: 19  LEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLAC-CAVEMMQASMPRY 77
           ++++   F++   EI     +            +  +  +         +E+     P+Y
Sbjct: 10  IQRITEKFNKTKEEIKSISPIFKK---------SLHIFPIDVANDNRLNLEIAALQTPQY 60

Query: 78  DLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137
           ++ RFG     SPR +D+++V G  + KM   L+   +QMP+P  ++ +    + G    
Sbjct: 61  NIHRFGIFFCDSPRHADLLLVLGKCSIKMIEPLKETVNQMPQPFGILVIEDENDIGIPVK 120

Query: 138 Y 138
            
Sbjct: 121 D 121


>gi|297725319|ref|NP_001175023.1| Os07g0116900 [Oryza sativa Japonica Group]
 gi|255677459|dbj|BAH93751.1| Os07g0116900 [Oryza sativa Japonica Group]
          Length = 114

 Score = 71.1 bits (173), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 31/49 (63%), Positives = 33/49 (67%)

Query: 62  LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASAL 110
           LA CAVEMM A    YD +RF    R SPRQSD MI+ GTLTNKM  AL
Sbjct: 58  LAYCAVEMMHAGASCYDFDRFRVIFRPSPRQSDCMIIVGTLTNKMGPAL 106


>gi|125557036|gb|EAZ02572.1| hypothetical protein OsI_24684 [Oryza sativa Indica Group]
 gi|125598924|gb|EAZ38500.1| hypothetical protein OsJ_22886 [Oryza sativa Japonica Group]
          Length = 135

 Score = 70.7 bits (172), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 31/49 (63%), Positives = 33/49 (67%)

Query: 62  LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASAL 110
           LA CAVEMM A    YD +RF    R SPRQSD MI+ GTLTNKM  AL
Sbjct: 58  LAYCAVEMMHAGASCYDFDRFRVIFRPSPRQSDCMIIVGTLTNKMGPAL 106


>gi|331664273|ref|ZP_08365179.1| formate hydrogenlyase subunit 7 (FHL subunit 7)
           (Hydrogenase-3component G) [Escherichia coli TA143]
 gi|331058204|gb|EGI30185.1| formate hydrogenlyase subunit 7 (FHL subunit 7)
           (Hydrogenase-3component G) [Escherichia coli TA143]
          Length = 88

 Score = 67.3 bits (163), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 28/71 (39%), Gaps = 1/71 (1%)

Query: 33  ITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPR 91
              +         L    R+  +  +  G    C +E+     P +D ERFG     SPR
Sbjct: 18  TVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPR 77

Query: 92  QSDVMIVAGTL 102
            +D+++  G +
Sbjct: 78  HADILLFTGAV 88


>gi|332278363|ref|ZP_08390776.1| LOW QUALITY PROTEIN: hydrogenase 4 Fe-S subunit [Shigella sp. D9]
 gi|332100715|gb|EGJ04061.1| LOW QUALITY PROTEIN: hydrogenase 4 Fe-S subunit [Shigella sp. D9]
          Length = 149

 Score = 64.9 bits (157), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 24/47 (51%), Positives = 31/47 (65%), Gaps = 4/47 (8%)

Query: 135 YYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKKI 177
            +H  YSV  G D IVP+D+++PGCPPT  A I+G      LLQ+KI
Sbjct: 14  IFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHGFAVALGLLQQKI 60


>gi|300951809|ref|ZP_07165623.1| conserved domain protein [Escherichia coli MS 116-1]
 gi|300448972|gb|EFK12592.1| conserved domain protein [Escherichia coli MS 116-1]
          Length = 136

 Score = 64.6 bits (156), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 24/47 (51%), Positives = 31/47 (65%), Gaps = 4/47 (8%)

Query: 135 YYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKKI 177
            +H  YSV  G D IVP+D+++PGCPPT  A I+G      LLQ+KI
Sbjct: 1   IFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHGFAVALGLLQQKI 47


>gi|323159342|gb|EFZ45327.1| hydrogenase-4 component I [Escherichia coli E128010]
          Length = 142

 Score = 64.6 bits (156), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 24/47 (51%), Positives = 31/47 (65%), Gaps = 4/47 (8%)

Query: 135 YYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKKI 177
            +H  YSV  G D IVP+D+++PGCPPT  A I+G      LLQ+KI
Sbjct: 7   IFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHGFAVALGLLQQKI 53


>gi|300820846|ref|ZP_07100996.1| conserved domain protein [Escherichia coli MS 119-7]
 gi|300526599|gb|EFK47668.1| conserved domain protein [Escherichia coli MS 119-7]
          Length = 142

 Score = 64.6 bits (156), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 24/47 (51%), Positives = 31/47 (65%), Gaps = 4/47 (8%)

Query: 135 YYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKKI 177
            +H  YSV  G D IVP+D+++PGCPPT  A I+G      LLQ+KI
Sbjct: 7   IFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHGFAVALGLLQQKI 53


>gi|261403395|ref|YP_003247619.1| coenzyme F420 hydrogenase, subunit gamma [Methanocaldococcus
           vulcanius M7]
 gi|261370388|gb|ACX73137.1| coenzyme F420 hydrogenase, subunit gamma [Methanocaldococcus
           vulcanius M7]
          Length = 227

 Score = 63.8 bits (154), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 23/88 (26%), Positives = 44/88 (50%), Gaps = 9/88 (10%)

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS---------YSV 142
           + D+ +V G++      +L    +   + + V+++G+CA  GG   YS         +S 
Sbjct: 49  ECDIALVEGSVCLDDHHSLEVAQEVRKKAKIVVALGACAATGGVTRYSKGNQLSKPVHSS 108

Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGI 170
                 ++ VD+ +PGCPP+ EA++  I
Sbjct: 109 FSPLTEVIKVDLAIPGCPPSPEAIVDVI 136


>gi|297619116|ref|YP_003707221.1| coenzyme F420 hydrogenase subunit gamma [Methanococcus voltae A3]
 gi|297378093|gb|ADI36248.1| coenzyme F420 hydrogenase, subunit gamma [Methanococcus voltae A3]
          Length = 242

 Score = 63.8 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 22/95 (23%), Positives = 44/95 (46%), Gaps = 9/95 (9%)

Query: 85  APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY------ 138
             R  P   D+ +V G++      A+  +       + V+++G+CA  GG   +      
Sbjct: 57  IERKIPENIDIALVEGSVCLDDHHAMDDILTTRKNSKIVVALGACAASGGVTRFARGGQM 116

Query: 139 ---SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGI 170
              S++       ++ VD+ +PGCPP+ E+++  I
Sbjct: 117 SQPSHASFAPIGDVIKVDLALPGCPPSPESIVNLI 151


>gi|294645801|ref|ZP_06723484.1| conserved domain protein [Bacteroides ovatus SD CC 2a]
 gi|292638814|gb|EFF57149.1| conserved domain protein [Bacteroides ovatus SD CC 2a]
          Length = 71

 Score = 63.0 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 24/53 (45%), Gaps = 2/53 (3%)

Query: 22 VDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQA 72
           +    ++  E+   G    +  +D  + W R+ SL  +TF  +CC +E M  
Sbjct: 19 DNESLEKLVKELNAGGANVALGVLDDFINWGRSNSLWPLTFATSCCGIEFMAL 71


>gi|73667997|ref|YP_304012.1| coenzyme F420-reducing hydrogenase subunit gamma [Methanosarcina
           barkeri str. Fusaro]
 gi|72395159|gb|AAZ69432.1| coenzyme F420-reducing hydrogenase, gamma subunit [Methanosarcina
           barkeri str. Fusaro]
          Length = 293

 Score = 62.6 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 43/90 (47%), Gaps = 10/90 (11%)

Query: 86  PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS------ 139
            R  P   DV +V G++  +   ++  + +   + + V+++GSCA  G    +S      
Sbjct: 82  VRHIPE-MDVALVEGSVCLQDHESVEDIKETRKKSKIVVALGSCACYGNITRFSRGGQHN 140

Query: 140 ---YSVVRGCDRIVPVDIYVPGCPPTAEAL 166
              +        ++ VD+Y+PGCPP+ E +
Sbjct: 141 QPQHESYLPIGDLIDVDVYIPGCPPSPELI 170


>gi|134045688|ref|YP_001097174.1| coenzyme F420-reducing hydrogenase subunit gamma [Methanococcus
           maripaludis C5]
 gi|132663313|gb|ABO34959.1| coenzyme F420-reducing hydrogenase, gamma subunit [Methanococcus
           maripaludis C5]
          Length = 242

 Score = 62.2 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 21/96 (21%), Positives = 45/96 (46%), Gaps = 9/96 (9%)

Query: 85  APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY------ 138
             R  P   D+ +V G++      ++  +       + V+++G+CA  GG   +      
Sbjct: 57  IERKIPEDIDIALVEGSVCLDDHHSVEDILTTRKNSKIVVALGACAASGGVTRFGRGNQM 116

Query: 139 ---SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171
              S++       ++ VD+ +PGCPP+ E+++  I+
Sbjct: 117 PQPSHASFVPIGDVIKVDLALPGCPPSPESIVNLIM 152


>gi|85682156|sp|P80491|FRHG_METBF RecName: Full=Coenzyme F420 hydrogenase subunit gamma; AltName:
           Full=8-hydroxy-5-deazaflavin-reducing hydrogenase
           subunit gamma; Short=FRH
 gi|2463281|emb|CAA74092.1| F420-reducing hydrogenase isoenzyme II gamma subunit
           [Methanosarcina barkeri]
          Length = 259

 Score = 62.2 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 43/90 (47%), Gaps = 10/90 (11%)

Query: 86  PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS------ 139
            R  P   DV +V G++  +   ++  + +   + + V+++GSCA  G    +S      
Sbjct: 48  VRHIPE-MDVALVEGSVCLQDHESVEDIKETRKKSKIVVALGSCACYGNITRFSRGGQHN 106

Query: 140 ---YSVVRGCDRIVPVDIYVPGCPPTAEAL 166
              +        ++ VD+Y+PGCPP+ E +
Sbjct: 107 QPQHESYLPIGDLIDVDVYIPGCPPSPELI 136


>gi|19698436|gb|AAL93146.1| NADH-ubiquinone oxidoreductase [Lupinus luteus]
          Length = 94

 Score = 61.9 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 22/33 (66%), Positives = 27/33 (81%)

Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMM 70
          F+++ VD L+ WAR GS+  MTFGLACCAVEMM
Sbjct: 62 FVISKVDDLMNWARRGSIWPMTFGLACCAVEMM 94


>gi|19698434|gb|AAL93145.1| NADH-ubiquinone oxidoreductase [Lupinus luteus]
          Length = 92

 Score = 61.9 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 22/33 (66%), Positives = 27/33 (81%)

Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMM 70
          F+++ VD L+ WAR GS+  MTFGLACCAVEMM
Sbjct: 60 FVISKVDDLMNWARRGSIWPMTFGLACCAVEMM 92


>gi|15668201|ref|NP_246994.1| coenzyme F420-reducing hydrogenase subunit gamma
           [Methanocaldococcus jannaschii DSM 2661]
 gi|2494431|sp|Q60340|FRHG_METJA RecName: Full=Coenzyme F420 hydrogenase subunit gamma; AltName:
           Full=8-hydroxy-5-deazaflavin-reducing hydrogenase
           subunit gamma; Short=FRH
 gi|1590833|gb|AAB98010.1| coenzyme F420-reducing hydrogenase, gamma subunit
           [Methanocaldococcus jannaschii DSM 2661]
          Length = 230

 Score = 61.1 bits (147), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 42/85 (49%), Gaps = 9/85 (10%)

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS---------YSV 142
           + D+ +V G++      +L    +   + + V+++G+CA  GG   Y          +S 
Sbjct: 52  ECDIALVEGSVCLDDHHSLEVAQEVRKKAKIVVALGACAATGGVTRYCKGNQLSKPVHSS 111

Query: 143 VRGCDRIVPVDIYVPGCPPTAEALI 167
                 ++ VD+ +PGCPP+ EA++
Sbjct: 112 FSPLTEVIKVDLAIPGCPPSPEAIV 136


>gi|256811180|ref|YP_003128549.1| coenzyme F420 hydrogenase, subunit gamma [Methanocaldococcus
           fervens AG86]
 gi|256794380|gb|ACV25049.1| coenzyme F420 hydrogenase, subunit gamma [Methanocaldococcus
           fervens AG86]
          Length = 227

 Score = 61.1 bits (147), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 22/88 (25%), Positives = 43/88 (48%), Gaps = 9/88 (10%)

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS---------YSV 142
           + D+ +V G++      +L    +   + + V+++G+CA  GG   Y          +S 
Sbjct: 49  ECDIALVEGSVCLDDHHSLEVAEEVRKKAKIVVALGACAATGGVTRYCKGNQMSKPVHSS 108

Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGI 170
                 ++ VD+ +PGCPP+ EA++  I
Sbjct: 109 FSPLTEVIKVDLAIPGCPPSPEAIVSVI 136


>gi|289192424|ref|YP_003458365.1| coenzyme F420 hydrogenase, subunit gamma [Methanocaldococcus sp.
           FS406-22]
 gi|288938874|gb|ADC69629.1| coenzyme F420 hydrogenase, subunit gamma [Methanocaldococcus sp.
           FS406-22]
          Length = 227

 Score = 61.1 bits (147), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 42/85 (49%), Gaps = 9/85 (10%)

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS---------YSV 142
           + D+ +V G++      +L    +   + + V+++G+CA  GG   Y          +S 
Sbjct: 49  ECDIALVEGSVCLDDHHSLEVAQEVRKKAKIVVALGACAATGGVTRYCKGNQLSKPVHSS 108

Query: 143 VRGCDRIVPVDIYVPGCPPTAEALI 167
                 ++ VD+ +PGCPP+ EA++
Sbjct: 109 FSPLTEVIKVDLAIPGCPPSPEAIV 133


>gi|73669778|ref|YP_305793.1| coenzyme F420-reducing hydrogenase subunit gamma [Methanosarcina
           barkeri str. Fusaro]
 gi|72396940|gb|AAZ71213.1| coenzyme F420-reducing hydrogenase, gamma subunit [Methanosarcina
           barkeri str. Fusaro]
          Length = 274

 Score = 60.7 bits (146), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 43/90 (47%), Gaps = 10/90 (11%)

Query: 86  PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS------ 139
            R  P   DV +V G++  +   ++  + +   + R V+++GSCA+ G    +       
Sbjct: 63  VRHIPE-MDVALVEGSVCIQDRESVEDIKETRKKSRIVVALGSCASYGNITRFCRGGQHN 121

Query: 140 ---YSVVRGCDRIVPVDIYVPGCPPTAEAL 166
              +        ++ VD+Y+PGCPP+ E +
Sbjct: 122 HPQHESYLPIGDLIDVDVYIPGCPPSPELI 151


>gi|20089854|ref|NP_615929.1| coenzyme F420 hydrogenase, subunit gamma [Methanosarcina
           acetivorans C2A]
 gi|19914803|gb|AAM04409.1| coenzyme F420 hydrogenase, subunit gamma [Methanosarcina
           acetivorans C2A]
          Length = 262

 Score = 60.7 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 42/92 (45%), Gaps = 10/92 (10%)

Query: 84  FAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS---- 139
              R  P   DV +V G++  +   ++  + +   + R V+++GSCA  G    +     
Sbjct: 55  VDVRHIPE-MDVALVEGSVCIQDRESVEDIKETRKKSRIVVALGSCATYGNITRFCRGGQ 113

Query: 140 -----YSVVRGCDRIVPVDIYVPGCPPTAEAL 166
                +        ++ VD+Y+PGCPP+ E +
Sbjct: 114 HNQPQHESFLPIGDLIDVDVYIPGCPPSPELI 145


>gi|2463276|emb|CAA74096.1| F420-reducing hydrogenase isoenzyme I gamma subunit [Methanosarcina
           barkeri]
          Length = 259

 Score = 60.3 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 43/90 (47%), Gaps = 10/90 (11%)

Query: 86  PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS------ 139
            R  P   DV +V G++  +   ++  + +   + R V+++GSCA+ G    +       
Sbjct: 48  VRHIPE-MDVALVEGSVCIQDRESVEDIKETRKKSRIVVALGSCASYGNITRFCRGGQHN 106

Query: 140 ---YSVVRGCDRIVPVDIYVPGCPPTAEAL 166
              +        ++ VD+Y+PGCPP+ E +
Sbjct: 107 HPQHESYLPIGDLIDVDVYIPGCPPSPELI 136


>gi|291080839|ref|ZP_06536433.2| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
          serovar Typhi str. AG3]
          Length = 39

 Score = 59.9 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 13/39 (33%), Positives = 21/39 (53%)

Query: 40 VTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78
          +  +  +V W R  S+    FGL+CC VEM+ +    +D
Sbjct: 1  MGKLHDMVNWGRKNSIWPYNFGLSCCYVEMVTSFTAVHD 39


>gi|156742696|ref|YP_001432825.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Roseiflexus
           castenholzii DSM 13941]
 gi|156234024|gb|ABU58807.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Roseiflexus
           castenholzii DSM 13941]
          Length = 125

 Score = 59.6 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/113 (27%), Positives = 50/113 (44%), Gaps = 10/113 (8%)

Query: 59  TFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMP 118
           T     C +EM+ A     D      A   SP ++DV+++ G LT+   +AL  +  ++ 
Sbjct: 13  TGSCGGCDLEMIAAISETAD-----IAWATSPHEADVLLITGPLTHSAKTALVALMQELA 67

Query: 119 EPRYVISMGSCANGGGYYHYSY-SVVRGCDRIVPVDIYVPGCPPTAEALIYGI 170
               ++++G CA  G  +     + V G    V VD    GCPP    +I  I
Sbjct: 68  HQPPLLAIGRCAIDGHPFGRGGLTSVAGLTMQVSVD----GCPPEHARIIESI 116


>gi|296109198|ref|YP_003616147.1| hypothetical protein Metin_0513 [Methanocaldococcus infernus ME]
 gi|295434012|gb|ADG13183.1| hypothetical protein Metin_0513 [Methanocaldococcus infernus ME]
          Length = 226

 Score = 59.2 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 9/92 (9%)

Query: 91  RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSY---------S 141
           ++ DV +V G++  +   AL    +   + + V+++G+CA  GG   Y           S
Sbjct: 48  KECDVALVEGSVCLEDHHALEVAKEVREKAKIVVALGACAAFGGLTRYCKGNQLPKPVNS 107

Query: 142 VVRGCDRIVPVDIYVPGCPPTAEALIYGILLL 173
                  ++ VD  +PGCPP+ EA+   I  L
Sbjct: 108 SFSPLTEVIKVDYSIPGCPPSPEAIYSFIKAL 139


>gi|21229145|ref|NP_635067.1| coenzyme F420 hydrogenase subunit gamma [Methanosarcina mazei Go1]
 gi|20907707|gb|AAM32739.1| Coenzyme F420 hydrogenase, gamma subunit [Methanosarcina mazei Go1]
          Length = 287

 Score = 59.2 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 41/82 (50%), Gaps = 9/82 (10%)

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS---------YSVVR 144
           DV +V G++  +   ++  + +   + + V+++GSCA  G    +S         +    
Sbjct: 89  DVALVEGSVCIQDHESVEEIRETREKAKIVVALGSCACYGNITRFSRGGQHNQPQHESFL 148

Query: 145 GCDRIVPVDIYVPGCPPTAEAL 166
               ++ VD+Y+PGCPP+ E +
Sbjct: 149 PIGDLIDVDVYIPGCPPSPELI 170


>gi|333001061|gb|EGK20631.1| formate hydrogenlyase subunit 7 [Shigella flexneri K-272]
          Length = 128

 Score = 58.8 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 21/43 (48%), Positives = 28/43 (65%), Gaps = 4/43 (9%)

Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILL----LQKKIRRVG 181
             G D+IVPVD+Y+PGCPPT  A +YG  +    L++KI   G
Sbjct: 2   WGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARG 44


>gi|303243618|ref|ZP_07329960.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanothermococcus
           okinawensis IH1]
 gi|302486179|gb|EFL49101.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanothermococcus
           okinawensis IH1]
          Length = 145

 Score = 58.0 bits (139), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 45/95 (47%), Gaps = 10/95 (10%)

Query: 86  PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS------ 139
            R  P  +D++++ G++      A+    +   + + ++++G+CA  GG   +S      
Sbjct: 44  VREIPE-ADIVLLEGSVCLDDHHAMEVAQEARKKGKILVALGACAATGGVTRFSRGGQMS 102

Query: 140 ---YSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171
              +        +V  D+ +PGCPP+ E ++  +L
Sbjct: 103 KPVHGSFSPLTEVVKCDLAIPGCPPSPEIIVNVVL 137


>gi|45358381|ref|NP_987938.1| coenzyme F420-reducing hydrogenase subunit gamma [Methanococcus
           maripaludis S2]
 gi|44921139|emb|CAF30374.1| coenzyme F420-reducing hydrogenase subunit gamma [Methanococcus
           maripaludis S2]
          Length = 242

 Score = 58.0 bits (139), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 22/96 (22%), Positives = 45/96 (46%), Gaps = 9/96 (9%)

Query: 85  APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY------ 138
             R  P   D+ +V G++      ++  +       + V+++G+CA  GG   +      
Sbjct: 57  IERKIPENIDIALVEGSVCLDDHHSVEDILTTRKNSKIVVALGACAASGGVTRFGRGGQM 116

Query: 139 ---SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171
              S+S       ++ VD+ +PGCPP+ E+++  I+
Sbjct: 117 SQPSHSSFVPIGDVIKVDLALPGCPPSTESIVNLIM 152


>gi|150398834|ref|YP_001322601.1| coenzyme F420 hydrogenase [Methanococcus vannielii SB]
 gi|150011537|gb|ABR53989.1| Coenzyme F420 hydrogenase [Methanococcus vannielii SB]
          Length = 242

 Score = 57.2 bits (137), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 23/96 (23%), Positives = 45/96 (46%), Gaps = 9/96 (9%)

Query: 85  APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY------ 138
             R  P   D+ +V G++      +L  +       + V+++G+CA  GG   +      
Sbjct: 57  IERKIPENIDIALVEGSVCLDDHHSLDDILTTRKNSKIVVALGACAASGGVTRFARGGQM 116

Query: 139 ---SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171
              S+S       ++ VD+ +PGCPP+ E+++  I+
Sbjct: 117 SQPSHSAFVPIGDVIKVDLALPGCPPSTESIVNLIM 152


>gi|148656787|ref|YP_001276992.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Roseiflexus sp.
           RS-1]
 gi|148568897|gb|ABQ91042.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Roseiflexus sp.
           RS-1]
          Length = 127

 Score = 57.2 bits (137), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 50/118 (42%), Gaps = 8/118 (6%)

Query: 56  MWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYD 115
            + T     C +E++ A     D+        A+P ++DV+++ G LT     A   +  
Sbjct: 6   RFNTGSCGGCDLEVIAALAAAADI-----DWAATPHEADVLLLTGPLTTDTKKAFMALLQ 60

Query: 116 QMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLL 173
           ++     +I++G CA  G  +      V      + V + + GCPPT   ++  I  +
Sbjct: 61  ELDHRAPIIAVGRCAIDGHPFGRGGVAVIPN---LTVHLSLDGCPPTPTQIVEAIRTI 115


>gi|45358947|ref|NP_988504.1| coenzyme F420-reducing hydrogenase subunit gamma [Methanococcus
           maripaludis S2]
 gi|45047813|emb|CAF30940.1| coenzyme F420-reducing hydrogenase subunit gamma [Methanococcus
           maripaludis S2]
          Length = 228

 Score = 57.2 bits (137), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 44/95 (46%), Gaps = 9/95 (9%)

Query: 86  PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS------ 139
            R  P   D++++ G++      A+    +   + + ++++G+CA  G    +S      
Sbjct: 44  VREIPDDVDIVLLEGSVCLSDHHAMEVALESRKKGKILVALGACAASGNITRFSKGNQPS 103

Query: 140 ---YSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171
              +        +V  D+ +PGCPP+ E+++  +L
Sbjct: 104 KPVHDSFAPLTEVVKCDLAIPGCPPSPESIVAVVL 138


>gi|147919453|ref|YP_686807.1| coenzyme F420-reducing hydrogenase, gamma subunit [uncultured
           methanogenic archaeon RC-I]
 gi|110622203|emb|CAJ37481.1| coenzyme F420-reducing hydrogenase, gamma subunit [uncultured
           methanogenic archaeon RC-I]
          Length = 233

 Score = 57.2 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/82 (23%), Positives = 39/82 (47%), Gaps = 9/82 (10%)

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS---------YSVVR 144
           D+ IV G++  +   ++  + +   +   V+++G CA  G   ++          +    
Sbjct: 55  DISIVEGSVCLQDEHSVHLIKEAREKSGLVVALGGCAATGCVCNFCRGGQANQPQHESFV 114

Query: 145 GCDRIVPVDIYVPGCPPTAEAL 166
             +++V VD Y+PGCPP  E +
Sbjct: 115 PINKLVKVDAYIPGCPPAPEVI 136


>gi|150401467|ref|YP_001325233.1| coenzyme F420 hydrogenase [Methanococcus aeolicus Nankai-3]
 gi|150014170|gb|ABR56621.1| Coenzyme F420 hydrogenase [Methanococcus aeolicus Nankai-3]
          Length = 227

 Score = 56.9 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 45/89 (50%), Gaps = 10/89 (11%)

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS---------YSV 142
           ++D+++V G++      A+    D   + + ++++G+CA  GG   +          +S 
Sbjct: 49  EADIILVEGSVCLDDHHAMEIAQDVGKKAKILVALGACAATGGITRFCRGGQMSKPIHSS 108

Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGIL 171
                 +V  D+ +PGCPP+ E +I G++
Sbjct: 109 FSPITEVVKCDLAIPGCPPSPE-IIVGLI 136


>gi|84490092|ref|YP_448324.1| FrhG [Methanosphaera stadtmanae DSM 3091]
 gi|84373411|gb|ABC57681.1| FrhG [Methanosphaera stadtmanae DSM 3091]
          Length = 256

 Score = 56.9 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/88 (27%), Positives = 46/88 (52%), Gaps = 10/88 (11%)

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGG--YYHYSYSVVRG------ 145
           D++++ G++  +   +L+ + +   + + ++++GSCA  GG   Y       +       
Sbjct: 78  DLVLIEGSVCLEDKHSLKELKEARSKSKLLVALGSCAATGGFTVYAKGGQQAQPQHSSFL 137

Query: 146 -CDRIVPVDIYVPGCPPTAEALIYGILL 172
               IV VD+ VPGCPP+ + +I  ILL
Sbjct: 138 ALQNIVKVDLAVPGCPPSPD-IIKKILL 164


>gi|150399445|ref|YP_001323212.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanococcus
           vannielii SB]
 gi|150012148|gb|ABR54600.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanococcus
           vannielii SB]
          Length = 228

 Score = 56.9 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 42/95 (44%), Gaps = 9/95 (9%)

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS---------Y 140
           P   D++++ G++      AL    +   + + ++++G+CA  G    +          +
Sbjct: 48  PDNVDIILLEGSVCLSDHHALEVALESRKKAKILVALGACAASGNITRFCKGNQMSKPIH 107

Query: 141 SVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175
                   +V  D+ +PGCPP+ EA++  I    K
Sbjct: 108 DSFAPLTEVVKCDLAIPGCPPSPEAIVAVIEAALK 142


>gi|282165081|ref|YP_003357466.1| coenzyme F420 hydrogenase subunit gamma [Methanocella paludicola
           SANAE]
 gi|282157395|dbj|BAI62483.1| coenzyme F420 hydrogenase subunit gamma [Methanocella paludicola
           SANAE]
          Length = 232

 Score = 56.9 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/82 (23%), Positives = 38/82 (46%), Gaps = 9/82 (10%)

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS---------YSVVR 144
           D+ IV G +  +   ++  + +   +   V++ G C+  G   ++S         +    
Sbjct: 55  DIAIVEGGVCLQDEESVHLIKETREKAGLVVAYGGCSATGNVLNFSRGGQWNQPQHESFV 114

Query: 145 GCDRIVPVDIYVPGCPPTAEAL 166
             +R++ VD Y+PGCPP  E +
Sbjct: 115 PINRLIKVDAYIPGCPPAPEVI 136


>gi|150402553|ref|YP_001329847.1| coenzyme F420 hydrogenase [Methanococcus maripaludis C7]
 gi|159905672|ref|YP_001549334.1| coenzyme F420 hydrogenase subunit gamma [Methanococcus maripaludis
           C6]
 gi|150033583|gb|ABR65696.1| Coenzyme F420 hydrogenase [Methanococcus maripaludis C7]
 gi|159887165|gb|ABX02102.1| coenzyme F420 hydrogenase, subunit gamma [Methanococcus maripaludis
           C6]
          Length = 228

 Score = 56.9 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 44/95 (46%), Gaps = 9/95 (9%)

Query: 86  PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS------ 139
            R  P   D++++ G++      A+    D   + + ++++G+CA  G    +S      
Sbjct: 44  VREVPDDVDIILLEGSVCLSDHHAMEVALDSRKKAKILVALGACAATGNVTRFSKGNQPS 103

Query: 140 ---YSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171
              +        +V  D+ +PGCPP+ E+++  +L
Sbjct: 104 KPVHDAFAPLTEVVKCDLAIPGCPPSPESIVAVVL 138


>gi|134045239|ref|YP_001096725.1| coenzyme F420-reducing hydrogenase subunit gamma [Methanococcus
           maripaludis C5]
 gi|132662864|gb|ABO34510.1| coenzyme F420-reducing hydrogenase, gamma subunit [Methanococcus
           maripaludis C5]
          Length = 228

 Score = 56.9 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 44/95 (46%), Gaps = 9/95 (9%)

Query: 86  PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS------ 139
            R  P   D++++ G++      A+    D   + + ++++G+CA  G    +S      
Sbjct: 44  VREVPDDVDIILLEGSVCLSDHHAMEVALDSRKKAKILVALGACAATGNVTRFSKGNQPS 103

Query: 140 ---YSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171
              +        +V  D+ +PGCPP+ E+++  +L
Sbjct: 104 KPVHDAFAPLTEVVKCDLAIPGCPPSPESIVAVVL 138


>gi|15679300|ref|NP_276417.1| coenzyme F420-reducing hydrogenase, gamma subunit
           [Methanothermobacter thermautotrophicus str. Delta H]
 gi|2622405|gb|AAB85778.1| coenzyme F420-reducing hydrogenase, gamma subunit
           [Methanothermobacter thermautotrophicus str. Delta H]
          Length = 275

 Score = 56.1 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 42/89 (47%), Gaps = 9/89 (10%)

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS---------YSVVR 144
           D+ +V G++  +   +L  + +   + + V + GSCA  G +  YS         +    
Sbjct: 97  DLALVEGSVCLQDEHSLHELKELREKAKLVCAFGSCAATGCFTRYSRGGQQAQPSHESFV 156

Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILLL 173
               ++ VD+ +PGCPP+ E +   ++ L
Sbjct: 157 PIADLIDVDLAIPGCPPSPEIIAKAVVAL 185


>gi|3334464|sp|P19498|FRHG_METTH RecName: Full=Coenzyme F420 hydrogenase subunit gamma; AltName:
           Full=8-hydroxy-5-deazaflavin-reducing hydrogenase
           subunit gamma; Short=FRH
          Length = 236

 Score = 56.1 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 42/89 (47%), Gaps = 9/89 (10%)

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS---------YSVVR 144
           D+ +V G++  +   +L  + +   + + V + GSCA  G +  YS         +    
Sbjct: 58  DLALVEGSVCLQDEHSLHELKELREKAKLVCAFGSCAATGCFTRYSRGGQQAQPSHESFV 117

Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILLL 173
               ++ VD+ +PGCPP+ E +   ++ L
Sbjct: 118 PIADLIDVDLAIPGCPPSPEIIAKAVVAL 146


>gi|149717|gb|AAA72189.1| F420 hydrogenase gamma-subuint (frhG) [Methanothermobacter
           thermautotrophicus]
          Length = 236

 Score = 55.7 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 42/89 (47%), Gaps = 9/89 (10%)

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS---------YSVVR 144
           D+ +V G++  +   +L  + +   + + V + GSCA  G +  YS         +    
Sbjct: 58  DLALVEGSVCLQDEHSLHELKELREKAKLVCAFGSCAQTGCFTRYSRGGQQAQPSHESFV 117

Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILLL 173
               ++ VD+ +PGCPP+ E +   ++ L
Sbjct: 118 PIADLIDVDLAIPGCPPSPEIIAKAVVAL 146


>gi|244280|gb|AAB21279.1| NADH:ubiquinone oxidoreductase (complex I) iron-sulfur protein
           fraction 20 kda polypeptide peptides T-4/T-7 [cattle,
           heart, Peptide Mitochondrial Partial, 33 aa]
          Length = 33

 Score = 55.3 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 31/33 (93%), Positives = 33/33 (100%)

Query: 112 RVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR 144
           +VYDQMPEPRYV+SMGSCANGGGYYHYSYSVVR
Sbjct: 1   KVYDQMPEPRYVVSMGSCANGGGYYHYSYSVVR 33


>gi|325957978|ref|YP_004289444.1| coenzyme F420 hydrogenase subunit gamma [Methanobacterium sp.
           AL-21]
 gi|325329410|gb|ADZ08472.1| coenzyme F420 hydrogenase, subunit gamma [Methanobacterium sp.
           AL-21]
          Length = 261

 Score = 54.5 bits (130), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 40/82 (48%), Gaps = 9/82 (10%)

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS---------YSVVR 144
           D+++V G++  +   +++ + +   +   V++ GSCA  G +  YS         +    
Sbjct: 83  DLVLVEGSVCLQDEHSVKELKEAREKAGLVVAFGSCAATGCFTRYSRGGQQARPDHESFV 142

Query: 145 GCDRIVPVDIYVPGCPPTAEAL 166
               +V VD  +PGCPP+ E +
Sbjct: 143 PIADLVKVDCAIPGCPPSPEII 164


>gi|219850771|ref|YP_002465203.1| coenzyme F420 hydrogenase, subunit gamma [Methanosphaerula
           palustris E1-9c]
 gi|219545030|gb|ACL15480.1| coenzyme F420 hydrogenase, subunit gamma [Methanosphaerula
           palustris E1-9c]
          Length = 253

 Score = 54.5 bits (130), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 41/90 (45%), Gaps = 10/90 (11%)

Query: 86  PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS------ 139
            R  P   DV +V G++  +  +A+  + +     + V+++G CA  G    +S      
Sbjct: 48  VRHIPE-MDVALVEGSVCLQDKTAVEEIKETRERAKIVVALGGCACYGNITRFSRGGQQN 106

Query: 140 ---YSVVRGCDRIVPVDIYVPGCPPTAEAL 166
              +        ++ VD+Y+PGC PT + +
Sbjct: 107 QPQHESYLPIGDLIDVDVYIPGCAPTPQMI 136


>gi|29565659|ref|NP_817241.1| NADH dehydrogenase subunit K [Pinus koraiensis]
 gi|29469758|gb|AAO74086.1| ORF82a [Pinus koraiensis]
          Length = 82

 Score = 54.2 bits (129), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 7/55 (12%)

Query: 129 CANGGGYYH-------YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKK 176
           C+  G  Y+        SYS V   D+++PVD+Y P CP   E +I  I  L+++
Sbjct: 21  CSCPGSMYYHIEMFGTDSYSTVHEVDKLIPVDVYSPDCPTEPEVIIDAITKLRER 75


>gi|297619514|ref|YP_003707619.1| coenzyme F420 hydrogenase subunit gamma [Methanococcus voltae A3]
 gi|297378491|gb|ADI36646.1| coenzyme F420 hydrogenase, subunit gamma [Methanococcus voltae A3]
          Length = 228

 Score = 54.2 bits (129), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 19/91 (20%), Positives = 40/91 (43%), Gaps = 9/91 (9%)

Query: 86  PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS------ 139
            R  P   D++++ G++      AL        + + ++++G+CA  G    +S      
Sbjct: 44  VREVPDDVDIILLEGSVCINDHHALETALACRKKAKILVALGACAASGNITRFSRGGQMS 103

Query: 140 ---YSVVRGCDRIVPVDIYVPGCPPTAEALI 167
              +        +V  D+ +PGCPP+ E ++
Sbjct: 104 KPVHDAFAPLTEVVKCDLAIPGCPPSPEIIV 134


>gi|312137254|ref|YP_004004591.1| coenzyme f420-reducing hydrogenase, gamma subunit [Methanothermus
           fervidus DSM 2088]
 gi|311224973|gb|ADP77829.1| coenzyme F420-reducing hydrogenase, gamma subunit [Methanothermus
           fervidus DSM 2088]
          Length = 254

 Score = 53.4 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 40/82 (48%), Gaps = 9/82 (10%)

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY---------SYSVVR 144
           D+ +V G++  +   ++  + +   +   + ++GSCA  GG+  Y         S+    
Sbjct: 76  DLALVEGSVCIQDEHSVEELMEAREKADLLCALGSCAMTGGFTRYARGGQQAQPSHESFL 135

Query: 145 GCDRIVPVDIYVPGCPPTAEAL 166
               +V VD+ +PGCPP+ E +
Sbjct: 136 PISELVKVDLAIPGCPPSPEII 157


>gi|207094125|ref|ZP_03241912.1| NADH dehydrogenase subunit B [Helicobacter pylori HPKX_438_AG0C1]
          Length = 35

 Score = 53.4 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/35 (57%), Positives = 28/35 (80%)

Query: 140 YSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQ 174
           Y+ V+G DR+VPVDIY+PGC P +E L Y +++LQ
Sbjct: 1   YATVQGADRVVPVDIYLPGCAPRSETLQYALMVLQ 35


>gi|218782785|ref|YP_002434103.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfatibacillum
           alkenivorans AK-01]
 gi|218764169|gb|ACL06635.1| F420-non-reducing hydrogenase, iron-sulfur subunit, MvhG
           [Desulfatibacillum alkenivorans AK-01]
          Length = 312

 Score = 53.0 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/143 (18%), Positives = 51/143 (35%), Gaps = 37/143 (25%)

Query: 66  AVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL-TNKMASALRRVYDQMPEPRYVI 124
            V +      +Y   + G        Q+DV I++G +   +     + + ++     ++I
Sbjct: 36  FVHIPALMDSKY-FGQLGDGKHLDIPQADVGIISGGIRNEEHLEVAKVMRERC---GFII 91

Query: 125 SMGSCANGGG------------YYHYSYSV--------------------VRGCDRIVPV 152
           ++G+CA  GG             +   Y                          D+ + V
Sbjct: 92  ALGTCATHGGIPSLANSYTPEQIFERYYHTETTDPADFVPNQGLPALLESCDAVDQHIKV 151

Query: 153 DIYVPGCPPTAEALIYGILLLQK 175
           D+ VPGCPP  + +   ++ L K
Sbjct: 152 DLLVPGCPPHPDHIFSALVALVK 174


>gi|44707|emb|CAA43502.1| F420-reducing hydrogenase subunit [Methanococcus voltae PS]
          Length = 228

 Score = 53.0 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/91 (20%), Positives = 41/91 (45%), Gaps = 9/91 (9%)

Query: 86  PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS------ 139
            R  P   D++++ G++      AL        + + ++++G+CA  G    +S      
Sbjct: 44  VREVPDDVDIILLEGSVCLSDHHALETALACREKAKILVALGACAASGNITRFSRGGQMS 103

Query: 140 ---YSVVRGCDRIVPVDIYVPGCPPTAEALI 167
              +        +V  D+ +PGCPP+ E+++
Sbjct: 104 KPVHDAFAPLTEVVKCDLAIPGCPPSPESIV 134


>gi|289192300|ref|YP_003458241.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanocaldococcus
           sp. FS406-22]
 gi|288938750|gb|ADC69505.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanocaldococcus
           sp. FS406-22]
          Length = 285

 Score = 52.6 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/119 (26%), Positives = 47/119 (39%), Gaps = 34/119 (28%)

Query: 89  SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY------------Y 136
            P   DV +V G + N+    L  +++   + + VI+ G+CA  GG              
Sbjct: 48  IPEGIDVFLVEGGIRNEHDEHL--IHEIREKSKIVIAWGTCAAYGGIPGLGNLYTKEELL 105

Query: 137 HYSYSV--------------------VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175
           +Y YS                     V+    +V VD  +PGCPPT E +   I+ L K
Sbjct: 106 NYVYSTDSTDNKGEIPSEDIPPLEDYVKPISAVVKVDYVIPGCPPTPEMIADAIVALLK 164


>gi|240102125|ref|YP_002958433.1| Coenzyme F420 hydrogenase subunit gamma (frhG) [Thermococcus
           gammatolerans EJ3]
 gi|239909678|gb|ACS32569.1| Coenzyme F420 hydrogenase subunit gamma (frhG) [Thermococcus
           gammatolerans EJ3]
          Length = 229

 Score = 52.2 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 9/82 (10%)

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY--YHYSYS-------VVR 144
           DV ++ G         L  + +   + R V++ GSCA+ GG   +              +
Sbjct: 53  DVALITGGACMNEPRILEELKEIREKARVVVAFGSCASLGGILRFARGGQEPRPDHRNFQ 112

Query: 145 GCDRIVPVDIYVPGCPPTAEAL 166
             + ++PVD  +PGCPPT + L
Sbjct: 113 PINSVIPVDYSIPGCPPTPQML 134


>gi|304315421|ref|YP_003850568.1| F420-reducing hydrogenase, subunit gamma [Methanothermobacter
           marburgensis str. Marburg]
 gi|302588880|gb|ADL59255.1| F420-reducing hydrogenase, subunit gamma [Methanothermobacter
           marburgensis str. Marburg]
          Length = 275

 Score = 51.8 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 42/89 (47%), Gaps = 9/89 (10%)

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS---------YSVVR 144
           D+ +V G++  +   +L  + +   + + V + GSCA  G +  YS         +    
Sbjct: 97  DLALVEGSVCLQDEHSLHELKELREKAKLVCAFGSCAATGCFTRYSRGGQQAQPSHESFV 156

Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILLL 173
               ++ VD+ +PGCPP+ E +   ++ L
Sbjct: 157 PIADLIDVDLALPGCPPSPEIIAKTVVAL 185


>gi|224368286|ref|YP_002602449.1| MvhG [Desulfobacterium autotrophicum HRM2]
 gi|223691002|gb|ACN14285.1| MvhG [Desulfobacterium autotrophicum HRM2]
          Length = 313

 Score = 50.7 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/162 (17%), Positives = 51/162 (31%), Gaps = 52/162 (32%)

Query: 62  LACCAVEMMQASMPRYDL------------------ERFGFAPRASPRQSDVMIVAGTLT 103
            + C + ++       DL                   + G        ++ V +V+G + 
Sbjct: 13  CSGCEIAILNLGETLLDLLPKINFVHIPVLMDHKHLGQLGDKQHIDIPKATVGLVSGGI- 71

Query: 104 NKMASALRRVYDQMPEPRYVISMGSCANGGGY------------YHYSYSV--------- 142
            +    L    +   +   VI++G+CA  GG             +   Y+          
Sbjct: 72  -RNEEHLEVAMEMRKKCDIVIALGTCATHGGIPALINSVTNEELFDRYYATESTDSGAQV 130

Query: 143 -----------VRGCDRIVPVDIYVPGCPPTAEALIYGILLL 173
                          D  + VDIY+PGCPP  + +   IL L
Sbjct: 131 PTKGISPLLDRCYALDEHIKVDIYLPGCPPHPDQIATAILAL 172


>gi|154150020|ref|YP_001403638.1| coenzyme F420 hydrogenase [Candidatus Methanoregula boonei 6A8]
 gi|153998572|gb|ABS54995.1| Coenzyme F420 hydrogenase [Methanoregula boonei 6A8]
          Length = 252

 Score = 50.3 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/82 (20%), Positives = 35/82 (42%), Gaps = 9/82 (10%)

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS---------YSVVR 144
           DV  V G++      A+  + +   +   V+++G CA  G    +          +    
Sbjct: 55  DVSFVEGSVCINDKLAVEEIKETREKSAVVVALGGCACYGNITRFCRGGQQNQPAHEAFL 114

Query: 145 GCDRIVPVDIYVPGCPPTAEAL 166
               ++ VD+++PGC PT + +
Sbjct: 115 PIGDLIKVDVFIPGCAPTPQMI 136


>gi|261403598|ref|YP_003247822.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanocaldococcus
           vulcanius M7]
 gi|261370591|gb|ACX73340.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanocaldococcus
           vulcanius M7]
          Length = 288

 Score = 49.9 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 47/120 (39%), Gaps = 34/120 (28%)

Query: 86  PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY---------- 135
           P+  P   DV +V G + N+    L  +++   + + VI+ G+CA  GG           
Sbjct: 48  PKEIPEGIDVFLVEGGIRNEHDEHL--IHEIREKSKIVIAWGTCAAYGGIPGLGNLYKKE 105

Query: 136 --YHYSYSV--------------------VRGCDRIVPVDIYVPGCPPTAEALIYGILLL 173
              +Y YS                     V+     + VD  +PGCPPT + +   I+ L
Sbjct: 106 ELLNYVYSTDSTENKGEIPSEEIPPLEEYVKPIKDFIKVDYTIPGCPPTPKMIADAIIAL 165


>gi|256810209|ref|YP_003127578.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanocaldococcus
           fervens AG86]
 gi|256793409|gb|ACV24078.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanocaldococcus
           fervens AG86]
          Length = 288

 Score = 49.9 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 46/120 (38%), Gaps = 34/120 (28%)

Query: 86  PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY---------- 135
           P+  P   DV +V G + N+    L  +++   + + VI+ GSCA  GG           
Sbjct: 48  PKEIPEGIDVFLVEGGIRNEHDEHL--IHEIREKSKIVIAWGSCAAFGGIPGLANLYTKE 105

Query: 136 --YHYSYSV--------------------VRGCDRIVPVDIYVPGCPPTAEALIYGILLL 173
              +  YS                     V+     V VD  +PGCPPT E +   I+ L
Sbjct: 106 EILNTVYSTDSTENKGEIPSEEVPPLEEYVKPISDFVKVDYVIPGCPPTPEMIASAIVAL 165


>gi|15669379|ref|NP_248186.1| methylviologen-reducing hydrogenase subunit VhuG
           [Methanocaldococcus jannaschii DSM 2661]
 gi|41018412|sp|Q58591|VHUG_METJA RecName: Full=F420-non-reducing hydrogenase vhu subunit G
 gi|1591819|gb|AAB99193.1| methylviologen-reducing hydrogenase, gamma chain (vhuG)
           [Methanocaldococcus jannaschii DSM 2661]
          Length = 288

 Score = 49.9 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 47/120 (39%), Gaps = 34/120 (28%)

Query: 86  PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY---------- 135
           P+  P   DV +V G + N+    L  +++   + + VI+ G+CA  GG           
Sbjct: 48  PKEIPEGIDVFLVEGGIRNEHDEHL--IHEIREKSKIVIAWGTCAAYGGIPGLGNLYKKE 105

Query: 136 --YHYSYSV--------------------VRGCDRIVPVDIYVPGCPPTAEALIYGILLL 173
              +Y YS                     V+     + VD  +PGCPPT + +   I+ L
Sbjct: 106 ELLNYVYSTDSTENKGEIPSEEIPPLEEYVKPIKDFIKVDYTIPGCPPTPKMIADAIIAL 165


>gi|298530301|ref|ZP_07017703.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298509675|gb|EFI33579.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 312

 Score = 49.5 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 55/166 (33%), Gaps = 53/166 (31%)

Query: 61  GLACCAVEMMQASMPRYDL-------------------ERFGFAPRASPRQSDVMIVAGT 101
             A C + ++       DL                    + G     S  ++ V IV+G 
Sbjct: 13  ACAGCEIAILNVGDVLVDLLVNNLDFVHIPVILDKKYFGQTGEEEHLSIPEAVVGIVSGG 72

Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGY----------------YHYSYSV--- 142
           +  +       + +   + + +I++G+CA  GG                 Y  S +    
Sbjct: 73  V--RNEEHKEVLLEMRKKCQILIALGTCATDGGIPAMINMYSDEELKKFTYKDSPTTDPA 130

Query: 143 -------------VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175
                            D +V VD+Y+PGCPP  + +   +L L +
Sbjct: 131 DYPTEHIPPLLDQCYALDELVKVDLYLPGCPPHPDWIAGAVLALLE 176


>gi|1706905|sp|Q00393|FRHG_METVO RecName: Full=Coenzyme F420 hydrogenase subunit gamma; AltName:
           Full=8-hydroxy-5-deazaflavin-reducing hydrogenase
           subunit gamma; Short=FRH
 gi|809730|emb|CAA43498.1| F420-reducing hydrogenase subunit [Methanococcus voltae PS]
          Length = 243

 Score = 49.2 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 43/94 (45%), Gaps = 10/94 (10%)

Query: 85  APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE-PRYVISMGSCANGGGYYHY----- 138
             R  P   D+ +V G++      ++  +        + ++++G+CA  GG   +     
Sbjct: 57  IERDIPGGIDIALVEGSVCLDDHHSMDDILTTRKNSKKSLVALGACAASGGVTRFRRVGQ 116

Query: 139 ----SYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168
               S++       ++ VD+ +PGCPP+ E+++ 
Sbjct: 117 MSQPSHASFVPIGDVIKVDLALPGCPPSTESIVK 150


>gi|307352753|ref|YP_003893804.1| coenzyme F420 hydrogenase subunit gamma [Methanoplanus petrolearius
           DSM 11571]
 gi|307155986|gb|ADN35366.1| coenzyme F420 hydrogenase, subunit gamma [Methanoplanus
           petrolearius DSM 11571]
          Length = 314

 Score = 48.8 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 42/90 (46%), Gaps = 10/90 (11%)

Query: 86  PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS------ 139
            R  P   DV +V G++  +   ++R + +   + + V+++G CA  G    +       
Sbjct: 105 VRHIPE-MDVALVEGSVCLQDECSVREIKETREKAKVVVALGGCAAYGNITRFCRGGQWN 163

Query: 140 ---YSVVRGCDRIVPVDIYVPGCPPTAEAL 166
              +        ++ VD+Y+P CPP AEA+
Sbjct: 164 QPQHESFVPIGDLIDVDVYLPSCPPGAEAI 193


>gi|298506751|gb|ADI85474.1| bidirectional NAD-reducing hydrogenase, small subunit [Geobacter
           sulfurreducens KN400]
          Length = 181

 Score = 48.8 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 29/111 (26%), Positives = 43/111 (38%), Gaps = 32/111 (28%)

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGG--------------- 134
           P   DV +V G +TN+   A+  +  Q    R VIS G CA  G                
Sbjct: 54  PAGVDVALVEGAVTNRANLAMAGIIRQ--RSRTVISFGDCAITGNVTAMRNLLTVAETLD 111

Query: 135 YYH--------YSYSVVR-------GCDRIVPVDIYVPGCPPTAEALIYGI 170
            +         + Y+ V           +++PVD Y+PGCPP  + +   I
Sbjct: 112 PFRCDGEASPAFDYAAVPQLLPRALPLHQVIPVDGYIPGCPPGPDRIRAAI 162


>gi|116750141|ref|YP_846828.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Syntrophobacter
           fumaroxidans MPOB]
 gi|116699205|gb|ABK18393.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Syntrophobacter
           fumaroxidans MPOB]
          Length = 184

 Score = 48.8 bits (115), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 40/119 (33%), Gaps = 35/119 (29%)

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGG---------------- 133
           P   DV +V G   N     +   ++     + VI+ G CA  G                
Sbjct: 54  PEGVDVTLVEGACCND--ENVHLAHEVRERSKIVIAFGDCAVTGNVPSMRNRLDRDQMIN 111

Query: 134 GYYHYSY-----------------SVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175
             Y                       V    +++PVDI++PGCPP  E +   I+ L K
Sbjct: 112 SVYFEGPGKPPPTSVLGHFLPTLIPKVLPLHQVIPVDIFLPGCPPDPERIWAAIVALLK 170


>gi|39997813|ref|NP_953764.1| NAD-reducing hydrogenase subunit delta [Geobacter sulfurreducens
           PCA]
 gi|39984705|gb|AAR36091.1| NAD-reducing hydrogenase, delta subunit [Geobacter sulfurreducens
           PCA]
          Length = 195

 Score = 48.4 bits (114), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 29/111 (26%), Positives = 43/111 (38%), Gaps = 32/111 (28%)

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGG--------------- 134
           P   DV +V G +TN+   A+  +  Q    R VIS G CA  G                
Sbjct: 68  PAGVDVALVEGAVTNRANLAMAGIIRQ--RSRTVISFGDCAITGNVTAMRNLLTVAETLD 125

Query: 135 YYH--------YSYSVVR-------GCDRIVPVDIYVPGCPPTAEALIYGI 170
            +         + Y+ V           +++PVD Y+PGCPP  + +   I
Sbjct: 126 PFRCDGEASPAFDYAAVPQLLPRALPLHQVIPVDGYIPGCPPGPDRIRAAI 176


>gi|320160377|ref|YP_004173601.1| bidirectional hydrogenase Y subunit [Anaerolinea thermophila UNI-1]
 gi|319994230|dbj|BAJ63001.1| bidirectional hydrogenase Y subunit [Anaerolinea thermophila UNI-1]
          Length = 180

 Score = 48.4 bits (114), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 1/43 (2%)

Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLL-QKKIRRVGNVK 184
           VR    +VPVD++VPGCPP  + + Y +  L Q +I  + + K
Sbjct: 134 VRAVHEVVPVDVFVPGCPPDPDVIFYVLSELAQGRIPELKDEK 176


>gi|124484842|ref|YP_001029458.1| coenzyme F420-reducing hydrogenase, gamma subunit
           [Methanocorpusculum labreanum Z]
 gi|124362383|gb|ABN06191.1| coenzyme F420-reducing hydrogenase, gamma subunit
           [Methanocorpusculum labreanum Z]
          Length = 303

 Score = 47.6 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 37/90 (41%), Gaps = 10/90 (11%)

Query: 86  PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY--YHYSYSVV 143
            R  P+  DV +V G++      ++  + +       V+++G CA  G    +       
Sbjct: 97  VRHIPK-MDVALVEGSVCINDECSMEEILETRENAAIVVALGGCACYGNTTRFCRGGQQN 155

Query: 144 RG-------CDRIVPVDIYVPGCPPTAEAL 166
           +           ++ VD+Y+P C PT + +
Sbjct: 156 QPQHEGFLPIGDLIKVDVYIPACAPTPQQI 185


>gi|148643182|ref|YP_001273695.1| coenzyme F420-reducing hydrogenase, gamma subunit, FrhG
           [Methanobrevibacter smithii ATCC 35061]
 gi|222445413|ref|ZP_03607928.1| hypothetical protein METSMIALI_01049 [Methanobrevibacter smithii
           DSM 2375]
 gi|261350025|ref|ZP_05975442.1| coenzyme F420 hydrogenase, subunit gamma [Methanobrevibacter
           smithii DSM 2374]
 gi|148552199|gb|ABQ87327.1| coenzyme F420-reducing hydrogenase, gamma subunit, FrhG
           [Methanobrevibacter smithii ATCC 35061]
 gi|222434978|gb|EEE42143.1| hypothetical protein METSMIALI_01049 [Methanobrevibacter smithii
           DSM 2375]
 gi|288860811|gb|EFC93109.1| coenzyme F420 hydrogenase, subunit gamma [Methanobrevibacter
           smithii DSM 2374]
          Length = 276

 Score = 47.6 bits (112), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 38/89 (42%), Gaps = 9/89 (10%)

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY--YHYSYSVVRG------ 145
           D+ ++ G++  +   ++  + +   +   + + GSCA  G +  Y       +       
Sbjct: 98  DLCLIEGSVCLQDEHSVHELLEAREKSALICAFGSCALNGCFTTYARGGQQAQPKHESFL 157

Query: 146 -CDRIVPVDIYVPGCPPTAEALIYGILLL 173
               +V VD+ +PGCP   E +   ++ L
Sbjct: 158 PISSLVKVDVALPGCPVAPEMIAKTVVAL 186


>gi|224372616|ref|YP_002606988.1| NADH ubiquinone oxidoreductase, 20 kda subunit [Nautilia
           profundicola AmH]
 gi|223588337|gb|ACM92073.1| NADH ubiquinone oxidoreductase, 20 kda subunit [Nautilia
           profundicola AmH]
          Length = 288

 Score = 47.2 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 38/89 (42%), Gaps = 18/89 (20%)

Query: 91  RQSDVMIVAGTLTNKMASALRRVYDQMPEPRY-----VISMGSCANGGGYYHYS------ 139
           +Q D++IV G L       L    +++    +     V+++G+CA  GG +         
Sbjct: 51  KQCDLLIVEGAL-KNNYPRLGYSLNELISKLFFKAKKVLALGTCAVYGGMFGEGLMYNKE 109

Query: 140 --YSVVRGCDRIVPVDIYVPGCPPTAEAL 166
                 +  D+I+     +PGCPP  + +
Sbjct: 110 QKGHYYKCRDKII----NLPGCPPHPDWI 134


>gi|189425848|ref|YP_001953025.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Geobacter lovleyi
           SZ]
 gi|189422107|gb|ACD96505.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Geobacter lovleyi
           SZ]
          Length = 179

 Score = 47.2 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/33 (39%), Positives = 19/33 (57%)

Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175
           V    ++V VD Y+PGCPP  E ++  +  L K
Sbjct: 133 VLPLHQVVEVDAYIPGCPPDPERILAALTALLK 165


>gi|212224711|ref|YP_002307947.1| Coenzyme F420 hydrogenase gamma subunit [Thermococcus onnurineus
           NA1]
 gi|212009668|gb|ACJ17050.1| Coenzyme F420 hydrogenase gamma subunit [Thermococcus onnurineus
           NA1]
          Length = 225

 Score = 47.2 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 34/82 (41%), Gaps = 9/82 (10%)

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS---------YSVVR 144
           DV I+ G         L  + +   +   V++ GSCA   G   +          +   +
Sbjct: 50  DVAIITGGACMNEPRILEELKEIREKAHTVVAFGSCATFSGILRFCRGGQEPRPDHRNFQ 109

Query: 145 GCDRIVPVDIYVPGCPPTAEAL 166
             + ++ VD  +PGCPPT + L
Sbjct: 110 PINSVIKVDYSIPGCPPTPQML 131


>gi|288561318|ref|YP_003424804.1| coenzyme F420 hydrogenase gamma subunit FrhG [Methanobrevibacter
           ruminantium M1]
 gi|288544028|gb|ADC47912.1| coenzyme F420 hydrogenase gamma subunit FrhG [Methanobrevibacter
           ruminantium M1]
          Length = 319

 Score = 47.2 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 40/89 (44%), Gaps = 9/89 (10%)

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY--YHYSYSVVRG------ 145
           D+ +V G++  +   +++ + +   +   V + GSCA  G +  Y     + +       
Sbjct: 141 DLALVEGSVCLQDEHSVKELMEVREKAGLVCAFGSCAMTGCFTRYARGGQLAQPKHESFV 200

Query: 146 -CDRIVPVDIYVPGCPPTAEALIYGILLL 173
               +V VD  +PGCP + E +   ++ L
Sbjct: 201 PISDLVKVDCAIPGCPASPEIIAKVVVAL 229


>gi|332702530|ref|ZP_08422618.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfovibrio
           africanus str. Walvis Bay]
 gi|332552679|gb|EGJ49723.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfovibrio
           africanus str. Walvis Bay]
          Length = 312

 Score = 46.8 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/113 (24%), Positives = 41/113 (36%), Gaps = 38/113 (33%)

Query: 97  IVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY----------------YHYSY 140
           IV+G +  K +  L  ++        +I++G+CA  GG                 YH S 
Sbjct: 65  IVSGGV--KNSEHLEVLHKMRESCDILIALGTCATDGGLPALANMYTNDEIREFSYHDSP 122

Query: 141 SVVRG--------------------CDRIVPVDIYVPGCPPTAEALIYGILLL 173
           + V                       D  V VDI +PGCPP  E +   +L L
Sbjct: 123 TTVDKGVRPNPDKFHIPHMLEHCTALDEHVKVDIKIPGCPPHPEWIAGAVLAL 175


>gi|88603575|ref|YP_503753.1| coenzyme F420 hydrogenase [Methanospirillum hungatei JF-1]
 gi|88189037|gb|ABD42034.1| coenzyme F420-reducing hydrogenase, gamma subunit [Methanospirillum
           hungatei JF-1]
          Length = 262

 Score = 46.8 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/82 (19%), Positives = 36/82 (43%), Gaps = 9/82 (10%)

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS---------YSVVR 144
           DV +V G++  +   ++  + +   +   V+++G CA  G    +          +    
Sbjct: 55  DVALVEGSVCLQDELSVEEIKETREKAAVVVALGGCAAYGNITRFCRGGQWNQPQHEGFV 114

Query: 145 GCDRIVPVDIYVPGCPPTAEAL 166
               ++ VD+Y+PGC P  + +
Sbjct: 115 PIGDVIDVDVYIPGCAPCPQQI 136


>gi|333015434|gb|EGK34773.1| formate hydrogenlyase subunit 7 [Shigella flexneri K-227]
          Length = 118

 Score = 46.8 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 4/33 (12%)

Query: 153 DIYVPGCPPTAEALIYGILL----LQKKIRRVG 181
           D+Y+PGCPPT  A +YG  +    L++KI   G
Sbjct: 2   DVYIPGCPPTPAATLYGFAMALGLLEQKIHARG 34


>gi|300087832|ref|YP_003758354.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
 gi|299527565|gb|ADJ26033.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
          Length = 305

 Score = 46.8 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/116 (23%), Positives = 49/116 (42%), Gaps = 36/116 (31%)

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPR-YVISMGSCANGGGY------------YHYS 139
           +DV I+ G++ ++     + + ++M      +IS+GSCAN GG             +  +
Sbjct: 61  ADVGIITGSIRSQ---ENKELAEEMRRKCKIIISLGSCANFGGIPALGNMYPNSEIFDTA 117

Query: 140 Y--------------------SVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175
           Y                      V   + ++ VDI +PGCPPT E +   ++ L +
Sbjct: 118 YRKTASTEAGDDPNEALPALTDRVYSVNEVIKVDISIPGCPPTPEWIANALVALLE 173


>gi|317052152|ref|YP_004113268.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfurispirillum
           indicum S5]
 gi|316947236|gb|ADU66712.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfurispirillum
           indicum S5]
          Length = 261

 Score = 46.8 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 52/164 (31%), Gaps = 46/164 (28%)

Query: 51  RTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP--------RQSDVMIVAGTL 102
           R  ++ +   G + C +  +       DL +       SP        +  D+ I  G +
Sbjct: 87  RLATVWF--GGCSGCHMSFLDLHEKLLDLAQH-VEVVYSPLADTKEFPKGVDITIAEGAI 143

Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGG----------------GYYHYSYSV---- 142
           TN     L  +         ++S+G CA  G                  YH         
Sbjct: 144 TN--VENLELLEQVRQHTTTLVSLGDCAITGNVTSLRNFFPVSDLLNAVYHAGPGTAPHG 201

Query: 143 -------------VRGCDRIVPVDIYVPGCPPTAEALIYGILLL 173
                        V    ++V VD ++PGCPP  +A+   +  L
Sbjct: 202 SEAVKELPALLPKVLPIHQVVKVDGFIPGCPPEPQAIWQAMEAL 245


>gi|158340824|ref|YP_001521992.1| Ni-Fe hydrogenase small subunit [Acaryochloris marina MBIC11017]
 gi|158311065|gb|ABW32678.1| Ni-Fe hydrogenase small subunit [Acaryochloris marina MBIC11017]
          Length = 181

 Score = 46.8 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/165 (20%), Positives = 55/165 (33%), Gaps = 64/165 (38%)

Query: 60  FGLACCAV----------EMMQ----ASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNK 105
            G + C +          E+         P  D +++       P++ DV +V G +   
Sbjct: 12  GGCSGCHMSFLDLDEWLFELAHQVDLVYSPFMDAKQY-------PQEVDVALVEGAI--A 62

Query: 106 MASALRRVYDQMPEPRYVISMGSCANGG-------------GYYHYSYSV---------- 142
                  ++      +Y+I+ G CA  G             G    SY            
Sbjct: 63  NTDHWEMIHQVRDCTQYLIAFGDCAVTGNVTALRNLLGTAEGVLERSYINLADLVPQIPA 122

Query: 143 -----------VRGCDRIVPVDIYVPGCPPTA-------EALIYG 169
                      V+    +VPVD+Y+PGCPP+        EAL+ G
Sbjct: 123 EEAIVPPLLDWVKPVHTVVPVDLYLPGCPPSPSRIKFVLEALLQG 167


>gi|125539136|gb|EAY85531.1| hypothetical protein OsI_06904 [Oryza sativa Indica Group]
          Length = 65

 Score = 46.8 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/39 (46%), Positives = 23/39 (58%)

Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPR 76
          F+++ VD L+ WAR G +  MTF L   AVEMM     R
Sbjct: 27 FVISKVDDLMNWARRGLMWPMTFRLTYYAVEMMHKGASR 65


>gi|254173024|ref|ZP_04879698.1| hydrogenase  (cytochrome-c3 hydrogenase delta chain) [Thermococcus
           sp. AM4]
 gi|214033180|gb|EEB74008.1| hydrogenase (cytochrome-c3 hydrogenase delta chain) [Thermococcus
           sp. AM4]
          Length = 241

 Score = 46.5 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/123 (26%), Positives = 51/123 (41%), Gaps = 24/123 (19%)

Query: 77  YDLERFGFAPRASPRQSDVMIVAGTLT-NKMASALRRVYDQMPEPRYVISMGSCANGG-- 133
           Y++E F  A R   R  DV +V GT++ ++    LR   +      Y+I++G+CA  G  
Sbjct: 32  YEIEEFHMATRLEGRHFDVGLVTGTVSSHRDLEVLR---EARNRSDYLIALGTCATHGCL 88

Query: 134 -------------GYYHYSYSVVRGCD-----RIVPVDIYVPGCPPTAEALIYGILLLQK 175
                          Y    + +R  D       V VD+ +PGCP     L   ++ + K
Sbjct: 89  QASVELPLKEKLKAVYGDEGNPMRALDPKPVVEYVTVDLAIPGCPYDKNELFQALIDIAK 148

Query: 176 KIR 178
            I 
Sbjct: 149 GIE 151


>gi|218193059|gb|EEC75486.1| hypothetical protein OsI_12075 [Oryza sativa Indica Group]
          Length = 396

 Score = 46.5 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 18/24 (75%)

Query: 38  FLVTSVDQLVTWARTGSLMWMTFG 61
           F+++ VD L+ WAR GS+  MTFG
Sbjct: 295 FVISKVDDLMNWARRGSIWPMTFG 318


>gi|332995893|gb|EGK15528.1| hydrogenase-4 component I domain protein [Shigella flexneri
          K-218]
          Length = 70

 Score = 46.5 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 10/29 (34%), Positives = 14/29 (48%)

Query: 60 FGLACCAVEMMQASMPRYDLERFGFAPRA 88
           G   C +E+  A  P +D ERFG    +
Sbjct: 42 GGCNACEIEIFAAITPVFDAERFGIKVVS 70


>gi|296109068|ref|YP_003616017.1| hypothetical protein Metin_0383 [Methanocaldococcus infernus ME]
 gi|295433882|gb|ADG13053.1| hypothetical protein Metin_0383 [Methanocaldococcus infernus ME]
          Length = 285

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/129 (24%), Positives = 46/129 (35%), Gaps = 42/129 (32%)

Query: 89  SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY------------Y 136
            P   DV +V G + NK    L +   +  + + V++ G+CA  GG              
Sbjct: 47  IPDGIDVFLVEGGIRNKHDEHLIKEIRE--KSKIVVAFGTCAAYGGIPGLANLYDKEELL 104

Query: 137 HYSYS--------------------VVRGCDRIVPVDIYVPGCPPTAEAL---IYGIL-- 171
              Y+                    V+R     V VD  +PGCPP  + +   +  IL  
Sbjct: 105 KEVYNTDSTDNKGEMPKEEIPELTDVLRPISDYVKVDYVIPGCPPCPDEIAKALEAILKG 164

Query: 172 ---LLQKKI 177
               L KKI
Sbjct: 165 EAPKLSKKI 173


>gi|152990706|ref|YP_001356428.1| Ni-Fe hydrogenase, small subunit HupS [Nitratiruptor sp. SB155-2]
 gi|151422567|dbj|BAF70071.1| Ni-Fe hydrogenase, small subunit HupS [Nitratiruptor sp. SB155-2]
          Length = 286

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 46/118 (38%), Gaps = 26/118 (22%)

Query: 79  LERFGFAPRA---SPRQ--------SDVMIVAGTLTNKMASALRRVY----DQMPEPRYV 123
           L++F F       SP Q         D+++V G L          +Y    D   + + +
Sbjct: 31  LQQFEFLYHPLLPSPLQLTELHKADCDILVVEGGLKQGWKKGKHDLYEIFTDLAKKAKKI 90

Query: 124 ISMGSCANGGGYYHYSYSVVRGC-----------DRIVPVDIYVPGCPPTAEALIYGI 170
           +++GSCA  GG +      + G            ++     + +PGCP   E + +GI
Sbjct: 91  VAVGSCAVYGGVFKEFDPTITGVLFDKNQKNRLYEQFFDKTVNIPGCPAHPEWIAFGI 148


>gi|217966523|ref|YP_002352029.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Dictyoglomus
           turgidum DSM 6724]
 gi|217335622|gb|ACK41415.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Dictyoglomus
           turgidum DSM 6724]
          Length = 180

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/176 (19%), Positives = 69/176 (39%), Gaps = 62/176 (35%)

Query: 54  SLMWMTFGLACCAVEMMQASMPRYDL-ERF------GFAPRASP--------RQSDVMIV 98
           S+     G + C        M   D+ ER       G    A+P         ++D+ I+
Sbjct: 8   SIWCE--GCSGC-------HMSFLDMDERLVELINKGLEINATPITDLKIPDEETDIGII 58

Query: 99  AGTL-TNKMASALRRVYDQMPEPRYVISMGSCANGGGY----------------YHYSYS 141
            G + T+     ++ + ++    + ++++G CA  GG                 Y  + S
Sbjct: 59  EGAVATDHHEEEVKMMRERC---KIIVALGDCAVFGGIPTMRNYFSKEELLERGYITTES 115

Query: 142 VV-----------------RGCDRIVPVDIYVPGCPPTAEALIYGILL-LQKKIRR 179
            V                 +  + ++ VD+Y+PGCPP+A+A+ Y +   L+ +I +
Sbjct: 116 TVDGKIPTSKEIGKHLPKTKAVNEVIKVDLYIPGCPPSADAIYYVLKEVLEGRIPK 171


>gi|256827280|ref|YP_003151239.1| hydrogenase (NiFe) small subunit HydA [Cryptobacterium curtum DSM
           15641]
 gi|256583423|gb|ACU94557.1| hydrogenase (NiFe) small subunit HydA [Cryptobacterium curtum DSM
           15641]
          Length = 439

 Score = 45.7 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 32/88 (36%), Gaps = 19/88 (21%)

Query: 95  VMIVAGTLTNKM---------ASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRG 145
           ++I  G +  K                + +  P    V+++GSCA  GG+   + +    
Sbjct: 125 ILIYEGAVLEKWGGEALRVAGKPGTEHLLEAAPSANAVVALGSCAVNGGWMGANPNSAGA 184

Query: 146 CDRI---------VPVDIYVPGCPPTAE 164
                        VPV + +PGCP   E
Sbjct: 185 VGVEKFLKESGINVPV-VNIPGCPANPE 211


>gi|20094366|ref|NP_614213.1| coenzyme F420-reducing hydrogenase, gamma subunit [Methanopyrus
           kandleri AV19]
 gi|19887431|gb|AAM02143.1| Coenzyme F420-reducing hydrogenase, gamma subunit [Methanopyrus
           kandleri AV19]
          Length = 252

 Score = 45.7 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 9/84 (10%)

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS---------YSV 142
           + DV +V G +       L  V +       ++++G+CA+ G +   S         +  
Sbjct: 68  ECDVAVVEGAVCLNDEHMLEEVEELEEHADTIVALGACASTGNFMRLSRGNQQAAPTHEA 127

Query: 143 VRGCDRIVPVDIYVPGCPPTAEAL 166
                 +  VD  VPGCPP  EA+
Sbjct: 128 FVPLTEVADVDYAVPGCPPAPEAI 151


>gi|253702558|ref|YP_003023747.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Geobacter sp. M21]
 gi|251777408|gb|ACT19989.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Geobacter sp. M21]
          Length = 315

 Score = 45.7 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/33 (39%), Positives = 18/33 (54%)

Query: 141 SVVRGCDRIVPVDIYVPGCPPTAEALIYGILLL 173
           SVV   D ++ VD Y+PGCPP    +   +  L
Sbjct: 130 SVVSPLDTVIDVDFYLPGCPPHPAFIFEALTAL 162


>gi|197120246|ref|YP_002140673.1| methyl viologen-reducing hydrogenase, small subunit [Geobacter
           bemidjiensis Bem]
 gi|197089606|gb|ACH40877.1| methyl viologen-reducing hydrogenase, small subunit [Geobacter
           bemidjiensis Bem]
          Length = 315

 Score = 45.3 bits (106), Expect = 0.004,   Method: Composition-based stats.
 Identities = 28/115 (24%), Positives = 40/115 (34%), Gaps = 36/115 (31%)

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPR-YVISMGSCANGGGYYHYS----------- 139
            + V +V+G + N      R   +QM +    VI+ GSCA  GG                
Sbjct: 51  HATVGLVSGAIRN---EHDRHAAEQMRKSCDIVIAWGSCAVFGGPAGAGNVHTPDEIAAA 107

Query: 140 ---------------------YSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLL 173
                                 SVV   D ++ VD Y+PGCPP    +   +  L
Sbjct: 108 VYLENKTTIPAPPPKREVSPLESVVSPLDTVIDVDFYLPGCPPHPVFIFEALTAL 162


>gi|189424611|ref|YP_001951788.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Geobacter lovleyi
           SZ]
 gi|189420870|gb|ACD95268.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Geobacter lovleyi
           SZ]
          Length = 316

 Score = 45.3 bits (106), Expect = 0.004,   Method: Composition-based stats.
 Identities = 10/33 (30%), Positives = 19/33 (57%)

Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175
           V   D+++ VD+Y+ GCPP    +   ++ L +
Sbjct: 134 VTPIDKVIDVDLYLAGCPPHPTYIFDALVSLLE 166


>gi|51244426|ref|YP_064310.1| Ni/Fe-hydrogenase, small subunit [Desulfotalea psychrophila LSv54]
 gi|50875463|emb|CAG35303.1| probable Ni/Fe-hydrogenase, small subunit [Desulfotalea
           psychrophila LSv54]
          Length = 364

 Score = 45.3 bits (106), Expect = 0.004,   Method: Composition-based stats.
 Identities = 24/97 (24%), Positives = 40/97 (41%), Gaps = 18/97 (18%)

Query: 92  QSDVMIVAGTLTNKM---------ASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142
              ++IV G +  K           +AL  + +  P+   +I++G+CA  GG    S + 
Sbjct: 109 HPFILIVEGAIPVKDNGIYCKIGGRTALEILGEVAPKATAIIAIGTCATSGGIQAASPNP 168

Query: 143 VRGCDRI--------VPVDIYVPGCPPTAEALIYGIL 171
                          VP+ + +PGCPP    L+  IL
Sbjct: 169 TGAVGVEDLPELTGNVPI-VNIPGCPPNPVNLLGTIL 204


>gi|154243755|ref|YP_001409328.1| Ni Fe-hydrogenase III large subunit-like protein [Xanthobacter
           autotrophicus Py2]
 gi|154246208|ref|YP_001417166.1| Ni Fe-hydrogenase III large subunit-like protein [Xanthobacter
           autotrophicus Py2]
 gi|154160293|gb|ABS67509.1| Ni Fe-hydrogenase III large subunit-like protein [Xanthobacter
           autotrophicus Py2]
 gi|154162877|gb|ABS70092.1| Ni Fe-hydrogenase III large subunit-like protein [Xanthobacter
           autotrophicus Py2]
          Length = 110

 Score = 44.9 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 27/60 (45%)

Query: 72  ASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCAN 131
           A     DL R G      PRQ++V++V   L   M  A    Y QMP PR V+ +G    
Sbjct: 41  ALAAGLDLSRAGLTEADGPRQANVLLVMLPLPAPMLKAATVAYAQMPRPRTVLVLGEGVI 100


>gi|254459031|ref|ZP_05072454.1| NADH ubiquinone oxidoreductase, 20 kda subunit [Campylobacterales
           bacterium GD 1]
 gi|207084302|gb|EDZ61591.1| NADH ubiquinone oxidoreductase, 20 kda subunit [Campylobacterales
           bacterium GD 1]
          Length = 287

 Score = 44.9 bits (105), Expect = 0.005,   Method: Composition-based stats.
 Identities = 25/101 (24%), Positives = 47/101 (46%), Gaps = 16/101 (15%)

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPE----PRYVISMGSCANGGGYYHYSY---SVVRG 145
            D+M++ GT+++    A   V D + +     + ++++G+CA  GG +  S    +    
Sbjct: 53  CDIMLIEGTISDDFKRADVLVVDIIKKYAKIVKKIVTVGTCATFGGIFKESDYENATGLH 112

Query: 146 CDRIVPVD---------IYVPGCPPTAEALIYGILLLQKKI 177
            DR  P+D         I V GCP   E L+  +  ++K +
Sbjct: 113 FDRNKPIDSFKNLLDKTISVSGCPVHPETLVNTLYAIKKSV 153


>gi|219849352|ref|YP_002463785.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Chloroflexus
           aggregans DSM 9485]
 gi|219543611|gb|ACL25349.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Chloroflexus
           aggregans DSM 9485]
          Length = 177

 Score = 44.5 bits (104), Expect = 0.006,   Method: Composition-based stats.
 Identities = 33/172 (19%), Positives = 54/172 (31%), Gaps = 62/172 (36%)

Query: 51  RTGSLMWMTFGLACCA----------VEMMQ----ASMPRYDLERFGFAPRASPRQSDVM 96
           R  ++     G + C           +E+         P  D++RF       P   DV 
Sbjct: 5   RIATIW--LGGCSGCHMSLLDLDEWLIELAAQADLVYSPIADVKRF-------PSHVDVT 55

Query: 97  IVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-----YSYSV--------- 142
           ++ G + N     L   +      + ++S G CA  G          S            
Sbjct: 56  LIEGAIANN--EHLELAHIARRNSKIIVSFGDCAVSGNVTALRNPLGSPEQLLQQVYIEH 113

Query: 143 --------------------VRGCDRIVPVDIYVPGCPPTA---EALIYGIL 171
                               V    +++PVD Y+ GCPP+A    AL+  +L
Sbjct: 114 SDPRGKIPHEPGIVPVLLDKVMPVHQVIPVDYYLSGCPPSAPRIRALLEALL 165


>gi|258406379|ref|YP_003199121.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfohalobium
           retbaense DSM 5692]
 gi|257798606|gb|ACV69543.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfohalobium
           retbaense DSM 5692]
          Length = 334

 Score = 44.5 bits (104), Expect = 0.006,   Method: Composition-based stats.
 Identities = 15/39 (38%), Positives = 25/39 (64%), Gaps = 3/39 (7%)

Query: 136 YHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQ 174
           +H S   VR   ++V VD ++PGCPPT E ++  + ++Q
Sbjct: 147 FHDS---VRALHQVVDVDYFLPGCPPTPERILDLLGVVQ 182


>gi|188496128|ref|ZP_03003398.1| hydrogenase-4 component I [Escherichia coli 53638]
 gi|188491327|gb|EDU66430.1| hydrogenase-4 component I [Escherichia coli 53638]
          Length = 124

 Score = 44.5 bits (104), Expect = 0.006,   Method: Composition-based stats.
 Identities = 15/30 (50%), Positives = 21/30 (70%), Gaps = 4/30 (13%)

Query: 152 VDIYVPGCPPTAEALIYGIL----LLQKKI 177
           +D+++PGCPPT  A I+G      LLQ+KI
Sbjct: 6   IDVWIPGCPPTPAATIHGFAVALGLLQQKI 35


>gi|289191703|ref|YP_003457644.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanocaldococcus
           sp. FS406-22]
 gi|288938153|gb|ADC68908.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanocaldococcus
           sp. FS406-22]
          Length = 298

 Score = 44.5 bits (104), Expect = 0.006,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 44/126 (34%), Gaps = 36/126 (28%)

Query: 84  FAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY-------- 135
              +  P + D+ ++ G + NK         +   + + VI+ G+CA  GG         
Sbjct: 41  MDVKEIPDEIDIALIEGGIRNK--ENEEIAKEMRNKAKIVIAFGTCATFGGVPGLGNLYS 98

Query: 136 --------YHYSYSV------------------VRGCDRIVPVDIYVPGCPPTAEALIYG 169
                   Y  + S                   V+    I+ VD ++PGCPP  E +   
Sbjct: 99  KEEILEKVYKTTLSTKNDEGIIPSEEVPPLTSRVKPLSEIIDVDYFIPGCPPNPEMIAKV 158

Query: 170 ILLLQK 175
           +  L +
Sbjct: 159 LKALLE 164


>gi|254431413|ref|ZP_05045116.1| F420-non reducing hydrogenase, subunit gamma [Cyanobium sp. PCC
           7001]
 gi|197625866|gb|EDY38425.1| F420-non reducing hydrogenase, subunit gamma [Cyanobium sp. PCC
           7001]
          Length = 193

 Score = 44.5 bits (104), Expect = 0.006,   Method: Composition-based stats.
 Identities = 30/125 (24%), Positives = 39/125 (31%), Gaps = 41/125 (32%)

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGG---------------- 133
           P   DV +V G +    A  L          R V+S G CA  G                
Sbjct: 56  PENVDVCLVEGAV--ANADNLELALQLRQRSRLVVSFGDCAVTGNVPALRNLWSEVDGGS 113

Query: 134 -----------------------GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGI 170
                                  G        VR    ++ VD+Y+PGCPP+AE +   I
Sbjct: 114 RQSVLDRGYLELADTGAQHPHAPGIVPELLERVRPLHEVIAVDLYLPGCPPSAERIRAAI 173

Query: 171 LLLQK 175
             L K
Sbjct: 174 EPLLK 178


>gi|301107928|ref|XP_002903046.1| conserved hypothetical protein [Phytophthora infestans T30-4]
 gi|262098164|gb|EEY56216.1| conserved hypothetical protein [Phytophthora infestans T30-4]
          Length = 62

 Score = 44.5 bits (104), Expect = 0.007,   Method: Composition-based stats.
 Identities = 27/50 (54%), Positives = 35/50 (70%), Gaps = 3/50 (6%)

Query: 106 MASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
           MA  +R V+D MP+   V+ MGSCA+GGGYYHYSY+ V G +R V +  Y
Sbjct: 1   MALGMRSVHDLMPD---VVFMGSCADGGGYYHYSYAEVYGYNRFVLLGFY 47


>gi|150401637|ref|YP_001325403.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanococcus
           aeolicus Nankai-3]
 gi|150014340|gb|ABR56791.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanococcus
           aeolicus Nankai-3]
          Length = 288

 Score = 44.5 bits (104), Expect = 0.007,   Method: Composition-based stats.
 Identities = 12/31 (38%), Positives = 18/31 (58%)

Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLL 173
           ++    ++ VDI +PGCPPT   +   IL L
Sbjct: 135 LKPVSDVIDVDIELPGCPPTPAMIANAILAL 165


>gi|149194374|ref|ZP_01871471.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Caminibacter
           mediatlanticus TB-2]
 gi|149135549|gb|EDM24028.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Caminibacter
           mediatlanticus TB-2]
          Length = 282

 Score = 44.5 bits (104), Expect = 0.007,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 46/93 (49%), Gaps = 10/93 (10%)

Query: 93  SDVMIVAGTL----TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 148
           SD++I+ G L         + ++ + + +   ++VI +G+C++ GG +     +    + 
Sbjct: 52  SDILIIEGALREGFKRNNKNLIKLIEELIINSKFVICLGTCSSYGGIFGEG-VMFNKKEN 110

Query: 149 IVPVD-----IYVPGCPPTAEALIYGILLLQKK 176
            +  D     I +PGCPP    L Y + +++++
Sbjct: 111 GIFYDYKDKIINIPGCPPHPNWLGYVLYMIKEQ 143


>gi|150400536|ref|YP_001324302.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanococcus
           aeolicus Nankai-3]
 gi|150013239|gb|ABR55690.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanococcus
           aeolicus Nankai-3]
          Length = 300

 Score = 44.5 bits (104), Expect = 0.007,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 43/126 (34%), Gaps = 36/126 (28%)

Query: 84  FAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY-------- 135
              +  P   D+ ++ G + NK         +   + + V++ G+CA  GG         
Sbjct: 42  MDVKEIPDNIDIALIEGGIRNK--ENEEIAIEMRKKAKIVVAFGTCAVYGGVPGLGNLHS 99

Query: 136 --------YHYSYSV------------------VRGCDRIVPVDIYVPGCPPTAEALIYG 169
                   Y  + S                   VR    ++ VD  +PGCPP  E +   
Sbjct: 100 NEEILDKAYKTTPSTENEKGIIPNEEIPELTSRVRPLPDVIDVDYIIPGCPPEPELIAKI 159

Query: 170 ILLLQK 175
           ++ L +
Sbjct: 160 LIALVE 165


>gi|134045692|ref|YP_001097178.1| F420-non-reducing hydrogenase subunit G [Methanococcus maripaludis
           C5]
 gi|132663317|gb|ABO34963.1| F420-non-reducing hydrogenase subunit G [Methanococcus maripaludis
           C5]
          Length = 300

 Score = 44.5 bits (104), Expect = 0.007,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 44/126 (34%), Gaps = 36/126 (28%)

Query: 84  FAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY-------- 135
              +  P   DV ++ G +  +    L+   +   + + VI+ G+CA  GG         
Sbjct: 42  MDVKEIPDGIDVALIEGGI--RNEENLQTAQEMRKKAKIVIAFGTCAAFGGIPGMGNLYS 99

Query: 136 --------YHYSYSV------------------VRGCDRIVPVDIYVPGCPPTAEALIYG 169
                   Y  ++S                   V+    ++ VD  +PGCPP  E +   
Sbjct: 100 NEALLEKAYKTTFSTKNEEGIIPSEDVPELTSRVKPLSDVIDVDYILPGCPPKPELIAEV 159

Query: 170 ILLLQK 175
           +  L K
Sbjct: 160 LTSLLK 165


>gi|206900904|ref|YP_002251593.1| NAD-reducing hydrogenase HoxS delta subunit [Dictyoglomus
           thermophilum H-6-12]
 gi|206740007|gb|ACI19065.1| NAD-reducing hydrogenase HoxS delta subunit [Dictyoglomus
           thermophilum H-6-12]
          Length = 180

 Score = 44.1 bits (103), Expect = 0.008,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 54/124 (43%), Gaps = 38/124 (30%)

Query: 91  RQSDVMIVAGTL-TNKMASALRRVYDQMPEPRYVISMGSCANGGGY-------------- 135
             +D+ I+ G + T+     ++ + ++    + ++++G CA  GG               
Sbjct: 51  EGTDIGIIEGAVATDHHEEEVKMMRERC---KIIVALGDCAVFGGIPTMRNYIPREELLE 107

Query: 136 --YHYSYSVV-----------------RGCDRIVPVDIYVPGCPPTAEALIYGILL-LQK 175
             Y  + S V                 +  + ++ VD+YVPGCPP+A+A+ Y +   L+ 
Sbjct: 108 RGYITTESTVDGKIPTSPEIGKHLPKTKAVNEVIKVDLYVPGCPPSADAIYYVLKEVLEG 167

Query: 176 KIRR 179
           +I +
Sbjct: 168 RIPK 171


>gi|18977703|ref|NP_579060.1| H-II delta (hydrogenase subunit delta) [Pyrococcus furiosus DSM
           3638]
 gi|7406956|gb|AAF61853.1|AF176650_3 sulfhydrogenase II subunit d [Pyrococcus furiosus DSM 3638]
 gi|18893437|gb|AAL81455.1| H-II delta (hydrogenase subunit delta) [Pyrococcus furiosus DSM
           3638]
          Length = 237

 Score = 44.1 bits (103), Expect = 0.008,   Method: Composition-based stats.
 Identities = 28/105 (26%), Positives = 41/105 (39%), Gaps = 23/105 (21%)

Query: 94  DVMIVAGTL-TNKMASALRRVYDQMPEPRYVISMGSCANGGGY--------------YHY 138
           DV +V GT+ T +    LR   D      Y+I++G+CA  G                Y  
Sbjct: 50  DVALVTGTVSTQRDLEVLR---DARNRSEYLIALGTCATHGSVQGVIENSKEAYRRVYGN 106

Query: 139 SYSVVR-----GCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
               V+          VPVD  +PGCP   E +   ++ + K I 
Sbjct: 107 GKPPVKLLNPKPVTDYVPVDFAIPGCPYDKEEVFQVLIDIAKGIE 151


>gi|303243538|ref|ZP_07329880.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanothermococcus
           okinawensis IH1]
 gi|302486099|gb|EFL49021.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanothermococcus
           okinawensis IH1]
          Length = 289

 Score = 44.1 bits (103), Expect = 0.008,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 46/120 (38%), Gaps = 36/120 (30%)

Query: 89  SPRQSDVMIVAGTLTNKMASALRRVYDQMPEP-RYVISMGSCANGGGY------------ 135
            P   DV +V G + N      + + +++ E  + V++ GSCA  GG             
Sbjct: 50  IPEGIDVFLVEGGIRN---EHDKHLVEEIREKSKIVVAWGSCAAFGGIPGLGNLYTKEEF 106

Query: 136 YHYSYSV--------------------VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175
            +  YS                     V+   ++V VD+ +PGCPP  E     I+ L +
Sbjct: 107 LNTIYSTASTDNPGEIPSEDIPPLEEEVKPISKVVKVDLVLPGCPPRPEHNAEAIVALLE 166


>gi|20093619|ref|NP_613466.1| coenzyme F420-reducing hydrogenase, gamma subunit [Methanopyrus
           kandleri AV19]
 gi|19886485|gb|AAM01396.1| Coenzyme F420-reducing hydrogenase, gamma subunit [Methanopyrus
           kandleri AV19]
          Length = 305

 Score = 44.1 bits (103), Expect = 0.010,   Method: Composition-based stats.
 Identities = 20/121 (16%), Positives = 42/121 (34%), Gaps = 37/121 (30%)

Query: 89  SPRQSDVMIVAGTL-TNKMASALRRVYDQMPEPRYVISMGSCANGGGY------------ 135
            P   +V ++ G++   +       + +       V+++G+CA  GG             
Sbjct: 50  IPEHVNVAVIEGSIRNEEDLEVAEELREA---ADIVVAVGTCACYGGVHGLANLYQLDDI 106

Query: 136 ----YHYSYSV-----------------VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQ 174
               +  + +                  VR    ++ VD  +PGCPP  E++   I  + 
Sbjct: 107 LEWVFKETPTTDDEGETPEEVVPELFGYVRPLPEVIDVDYMLPGCPPKPESIAEVITAIL 166

Query: 175 K 175
           +
Sbjct: 167 E 167


>gi|45358385|ref|NP_987942.1| coenzyme F420-non-reducing hydrogenase subunit gamma [Methanococcus
           maripaludis S2]
 gi|44921143|emb|CAF30378.1| coenzyme F420-non-reducing hydrogenase subunit gamma [Methanococcus
           maripaludis S2]
          Length = 300

 Score = 44.1 bits (103), Expect = 0.010,   Method: Composition-based stats.
 Identities = 30/129 (23%), Positives = 48/129 (37%), Gaps = 39/129 (30%)

Query: 84  FAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY-------- 135
              +  P   DV ++ G +  +    L    +   + + VI+ G+CA  GG         
Sbjct: 42  MDVKEIPDDIDVALIEGGI--RNEENLHIAQEMRKKAKIVIAFGTCAVYGGIPGIGNLYS 99

Query: 136 --------YHYSYSV------------------VRGCDRIVPVDIYVPGCPPTAEALIYG 169
                   Y  ++S                   V+    ++ VD  +PGCPP  E LI G
Sbjct: 100 NEALLEKAYKTTFSTKNEEGIIPSEDVPELTSRVKPLSDVIDVDYILPGCPPKPE-LIAG 158

Query: 170 IL--LLQKK 176
           +L  LL+ K
Sbjct: 159 VLTSLLEGK 167


>gi|116751372|ref|YP_848059.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Syntrophobacter
           fumaroxidans MPOB]
 gi|116700436|gb|ABK19624.1| F420-non-reducing hydrogenase subunit G [Syntrophobacter
           fumaroxidans MPOB]
          Length = 309

 Score = 43.8 bits (102), Expect = 0.011,   Method: Composition-based stats.
 Identities = 11/33 (33%), Positives = 18/33 (54%)

Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175
               D  V VD+Y+PGCPP  + +   ++ L +
Sbjct: 142 CSALDEQVKVDVYLPGCPPHPDHVFAALVALVE 174


>gi|182415490|ref|YP_001820556.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Opitutus terrae
           PB90-1]
 gi|177842704|gb|ACB76956.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Opitutus terrae
           PB90-1]
          Length = 334

 Score = 43.8 bits (102), Expect = 0.011,   Method: Composition-based stats.
 Identities = 15/35 (42%), Positives = 20/35 (57%)

Query: 141 SVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175
             VR  D++V VD Y+PGCPPT +     I  L +
Sbjct: 148 HTVRSLDQVVAVDYYIPGCPPTPKITKAAITALLE 182


>gi|15668907|ref|NP_247711.1| coenzyme F420-reducing hydrogenase subunit gamma
           [Methanocaldococcus jannaschii DSM 2661]
 gi|2496112|sp|Q58136|Y726_METJA RecName: Full=Uncharacterized protein MJ0726
 gi|1591442|gb|AAB98722.1| coenzyme F420-reducing hydrogenase, gamma subunit
           [Methanocaldococcus jannaschii DSM 2661]
          Length = 216

 Score = 43.4 bits (101), Expect = 0.013,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 42/94 (44%), Gaps = 10/94 (10%)

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-------HYSYSVVRGC 146
           D+++V G +       ++++ +     + +I++GSCA  GG+        +         
Sbjct: 26  DIVLVGGAVNLDDEEEVKKIMEIRKNSKVLIAVGSCAVSGGFQRMLIGLENGFPQRFVRI 85

Query: 147 DRIVPVDIYVPGCPPTAEA---LIYGILLLQKKI 177
             +V VD  + GCPP  E    ++  ++   K+I
Sbjct: 86  GDVVKVDYAIIGCPPDEEEVERIVKAVIEKDKEI 119


>gi|212702286|ref|ZP_03310414.1| hypothetical protein DESPIG_00297 [Desulfovibrio piger ATCC 29098]
 gi|212674279|gb|EEB34762.1| hypothetical protein DESPIG_00297 [Desulfovibrio piger ATCC 29098]
          Length = 316

 Score = 43.4 bits (101), Expect = 0.014,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 42/85 (49%), Gaps = 13/85 (15%)

Query: 106 MASALRRVYDQMPEPRYVISMGSCANGGGY---------YHYSYSVVRGCDRIVPVDIYV 156
           MA  ++++    P+   V+++G+CA  GG             + ++++      PV + +
Sbjct: 135 MADLVKKL---APDAAAVLALGTCAAYGGIPAAKGSVTEAMGTGALLKQAGIKTPV-VNI 190

Query: 157 PGCPPTAEALIYGILLLQKKIRRVG 181
           PGCPP  + ++  I L  +KI+  G
Sbjct: 191 PGCPPQPDWIVGTIALALQKIKEKG 215


>gi|78222330|ref|YP_384077.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Geobacter
           metallireducens GS-15]
 gi|78193585|gb|ABB31352.1| NAD(P)-dependent nickel-iron dehydrogenase subunit HoxY [Geobacter
           metallireducens GS-15]
          Length = 180

 Score = 43.4 bits (101), Expect = 0.015,   Method: Composition-based stats.
 Identities = 38/174 (21%), Positives = 61/174 (35%), Gaps = 57/174 (32%)

Query: 50  ARTGSLMWMT---FGLACCA----------VEMMQAS----MPRYDLERFGFAPRASPRQ 92
            R G + + T    G + C           VE+   +     P  D + F       PR+
Sbjct: 2   GRRGRIRFATVWLGGCSGCHMSFLDLDERLVELAGLADMVYGPFMDAKEF-------PRK 54

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH--------------- 137
            DV +V G +TN+   A+  +  +    R V+S+G CA  G                   
Sbjct: 55  VDVTLVEGAVTNRANLAMALMLRE--RSRIVVSLGDCAVTGNVTSLRNQLPVADVLATFL 112

Query: 138 ---------YSYSVVR-------GCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175
                      Y+ V           +++ VD ++PGCPP  E +   I  L +
Sbjct: 113 SCGEGSVPAMDYNAVPELLPRALPLHQVIAVDGFLPGCPPDPERIWTAIGCLLR 166


>gi|320353845|ref|YP_004195184.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfobulbus
           propionicus DSM 2032]
 gi|320122347|gb|ADW17893.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfobulbus
           propionicus DSM 2032]
          Length = 308

 Score = 43.4 bits (101), Expect = 0.016,   Method: Composition-based stats.
 Identities = 12/31 (38%), Positives = 18/31 (58%)

Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLL 173
           V   D  V +D+ +PGCPP  E ++  I+ L
Sbjct: 137 VYSVDEQVRLDLCLPGCPPRPETIVEAIVAL 167


>gi|78224510|ref|YP_386257.1| F420-non-reducing hydrogenase subunit G [Geobacter metallireducens
           GS-15]
 gi|78195765|gb|ABB33532.1| F420-non-reducing hydrogenase subunit G [Geobacter metallireducens
           GS-15]
          Length = 316

 Score = 43.4 bits (101), Expect = 0.016,   Method: Composition-based stats.
 Identities = 11/33 (33%), Positives = 18/33 (54%)

Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175
           V   D ++ VD+Y+PGC P    +   +L L +
Sbjct: 132 VSPLDSVIDVDLYLPGCAPHPAFVFDALLALLE 164


>gi|170290731|ref|YP_001737547.1| coenzyme F420-reducing hydrogenase, gamma subunit [Candidatus
           Korarchaeum cryptofilum OPF8]
 gi|170174811|gb|ACB07864.1| Coenzyme F420-reducing hydrogenase, gamma subunit [Candidatus
           Korarchaeum cryptofilum OPF8]
          Length = 319

 Score = 43.4 bits (101), Expect = 0.016,   Method: Composition-based stats.
 Identities = 11/22 (50%), Positives = 15/22 (68%)

Query: 143 VRGCDRIVPVDIYVPGCPPTAE 164
           +   D ++ VD Y+PGCPPT E
Sbjct: 150 LDPLDAVIDVDYYIPGCPPTPE 171


>gi|37787354|gb|AAP50522.1| Hox1Y [Thiocapsa roseopersicina]
          Length = 180

 Score = 43.0 bits (100), Expect = 0.018,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 24/33 (72%)

Query: 141 SVVRGCDRIVPVDIYVPGCPPTAEALIYGILLL 173
           +VV+    +V VD++VPGCPP+A+A+ Y +  L
Sbjct: 132 AVVKPIHGVVGVDVFVPGCPPSADAIWYVLSEL 164


>gi|39997513|ref|NP_953464.1| nickel-dependent hydrogenase small subunit [Geobacter
           sulfurreducens PCA]
 gi|39984404|gb|AAR35791.1| nickel-dependent hydrogenase, small subunit, putative [Geobacter
           sulfurreducens PCA]
 gi|298506455|gb|ADI85178.1| methyl viologen-reducing hydrogenase, small subunit [Geobacter
           sulfurreducens KN400]
          Length = 316

 Score = 43.0 bits (100), Expect = 0.018,   Method: Composition-based stats.
 Identities = 11/33 (33%), Positives = 18/33 (54%)

Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175
           V   D ++ VD+Y+PGC P    +   +L L +
Sbjct: 132 VSPLDSVIDVDLYLPGCAPHPAFVFDALLALLE 164


>gi|167627041|ref|YP_001677541.1| hypothetical protein Fphi_0818 [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|167597042|gb|ABZ87040.1| conserved hypothetical protein [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
          Length = 268

 Score = 43.0 bits (100), Expect = 0.019,   Method: Composition-based stats.
 Identities = 23/108 (21%), Positives = 41/108 (37%), Gaps = 31/108 (28%)

Query: 94  DVMIVAGTL-TNKMASALRRVYDQMPEPRYVISMGSCANGGGY----------------- 135
           D+  + G++ T+     L+++ +   + +YVI++G+CA  GG                  
Sbjct: 63  DIAFIEGSVNTHHDIPRLQKIRE---KAKYVIAIGACAVAGGIQALRNYTNAAELLEWQK 119

Query: 136 ----------YHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLL 173
                          S  +     V VD  + GCP T E ++  I  L
Sbjct: 120 AVYPQDTDVIIKEDLSTAKAIKEYVNVDFEISGCPITTEQILKAIRQL 167


>gi|241667628|ref|ZP_04755206.1| hypothetical protein FphipA2_02580 [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254876173|ref|ZP_05248883.1| predicted protein [Francisella philomiragia subsp. philomiragia
           ATCC 25015]
 gi|254842194|gb|EET20608.1| predicted protein [Francisella philomiragia subsp. philomiragia
           ATCC 25015]
          Length = 268

 Score = 43.0 bits (100), Expect = 0.020,   Method: Composition-based stats.
 Identities = 23/108 (21%), Positives = 41/108 (37%), Gaps = 31/108 (28%)

Query: 94  DVMIVAGTL-TNKMASALRRVYDQMPEPRYVISMGSCANGGGY----------------- 135
           D+  + G++ T+     L+++ +   + +YVI++G+CA  GG                  
Sbjct: 63  DIAFIEGSVNTHHDIPRLQKIRE---KAKYVIAIGACAVAGGIQALRNYTNAAELLEWQK 119

Query: 136 ----------YHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLL 173
                          S  +     V VD  + GCP T E ++  I  L
Sbjct: 120 AVYPQDTDVIIKEDLSTAKAIKEYVNVDFEISGCPITTEQILKAIRQL 167


>gi|2072169|gb|AAB53703.1| bidirectional hydrogenase small subunit [Prochlorothrix hollandica]
          Length = 178

 Score = 43.0 bits (100), Expect = 0.020,   Method: Composition-based stats.
 Identities = 31/148 (20%), Positives = 47/148 (31%), Gaps = 44/148 (29%)

Query: 61  GLACCAVEMMQASMPRYDLERF--------GFAPRASPRQSDVMIVAGTLTNKMASALRR 112
           G + C +  +       DL R         G   +  P   DV +V G +       L  
Sbjct: 13  GCSGCHMSFLDLDEWLIDLAREVEVVYSPVGCDLKDYPEGVDVCLVEGAV--ANEENLEL 70

Query: 113 VYDQMPEPRYVISMGSCAN-------------GGGYYHYSYSVVRGCD------------ 147
            Y      + VIS G CA              G      +Y  +                
Sbjct: 71  AYRVRQRTKMVISFGDCAVTANVPAMLGDGDAGNAVLKRAYLELGDVTPQLPDEPGIVPP 130

Query: 148 ---------RIVPVDIYVPGCPPTAEAL 166
                    +++PVD+Y+PGCPP A+ +
Sbjct: 131 LLDQVLPLHQVIPVDLYLPGCPPPADRI 158


>gi|156741352|ref|YP_001431481.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Roseiflexus
           castenholzii DSM 13941]
 gi|156232680|gb|ABU57463.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Roseiflexus
           castenholzii DSM 13941]
          Length = 181

 Score = 43.0 bits (100), Expect = 0.020,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 43/118 (36%), Gaps = 39/118 (33%)

Query: 90  PRQSDVMIVAGTL-TNKMASALRRVYDQMPEPRYVISMGSCANGG--------------- 133
           P   DV +V G +        +R+V +     R +I+ G CA  G               
Sbjct: 49  PDHVDVALVEGAVANEDHLHLIRQVRE---RTRILIAFGDCAVTGNVTALRNPLGAPEAL 105

Query: 134 ------------GYYHYSYSVV-------RGCDRIVPVDIYVPGCPPTAEALIYGILL 172
                       G   ++  +V       +   ++VPVD+Y+PGCPP     I  +L 
Sbjct: 106 LHTIYIERAEIAGCLPHAPGIVPQLLDKVQPVHKVVPVDVYLPGCPP-PAPRIRALLE 162


>gi|297569388|ref|YP_003690732.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfurivibrio
           alkaliphilus AHT2]
 gi|296925303|gb|ADH86113.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfurivibrio
           alkaliphilus AHT2]
          Length = 178

 Score = 43.0 bits (100), Expect = 0.021,   Method: Composition-based stats.
 Identities = 21/113 (18%), Positives = 40/113 (35%), Gaps = 34/113 (30%)

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY-------------- 135
           P + D+ ++ G ++     A  R+       R V+++G CA  G                
Sbjct: 50  PDRVDLALLEGAVSTPEDEAKARLVRA--HSRLVVALGDCACQGNVPALRNRLDNEQLLD 107

Query: 136 --YH---YSYSVVRG-------------CDRIVPVDIYVPGCPPTAEALIYGI 170
             Y       +                   R++ VD+++PGCPP   A++  +
Sbjct: 108 LVYRQQADGPAAAPPDRNVPPLLTHSLPLHRVIAVDLFLPGCPPPPAAIVRAL 160


>gi|148657643|ref|YP_001277848.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Roseiflexus sp.
           RS-1]
 gi|148569753|gb|ABQ91898.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Roseiflexus sp.
           RS-1]
          Length = 181

 Score = 42.6 bits (99), Expect = 0.023,   Method: Composition-based stats.
 Identities = 34/175 (19%), Positives = 55/175 (31%), Gaps = 62/175 (35%)

Query: 47  VTWARTGSLMWMTFGLACCAV----------EMMQ----ASMPRYDLERFGFAPRASPRQ 92
           +   R  ++     G + C +          E+         P  D++ +       P +
Sbjct: 1   MNKLRLATVW--LGGCSGCHMSFLDLDEWLFELAHRVDLVYSPLADVKEY-------PDR 51

Query: 93  SDVMIVAGTL-TNKMASALRRVYDQMPEPRYVISMGSCANGG------------------ 133
            DV +V G +        +R+V +     R VI+ G CA  G                  
Sbjct: 52  VDVALVEGAVANEDNLHLIRQVRE---RTRLVIAFGDCAVTGNVTALRNVLGDPETLLHT 108

Query: 134 ----------------GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILL 172
                           G        V    ++VPVD+Y+PGCPP     I  +L 
Sbjct: 109 IYVERADTAGQMPLAPGIVPRLLDRVYPVHKVVPVDVYLPGCPP-PAQRIRALLE 162


>gi|71906620|ref|YP_284207.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Dechloromonas
           aromatica RCB]
 gi|71846241|gb|AAZ45737.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Dechloromonas
           aromatica RCB]
          Length = 182

 Score = 42.6 bits (99), Expect = 0.024,   Method: Composition-based stats.
 Identities = 29/113 (25%), Positives = 45/113 (39%), Gaps = 36/113 (31%)

Query: 87  RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGG------------ 134
             SP   D+ I+ G L N  A  +  + +     + +I+MG+CA  GG            
Sbjct: 50  TCSPD-CDIGIIEGGLCN--AENVHVLREFRKNCKILIAMGACAINGGLPAQRNHLPLTT 106

Query: 135 ----YYHYSY-----------------SVVRGCDRIVPVDIYVPGCPPTAEAL 166
                YH S                  + V     +V VD ++PGCPP+A+A+
Sbjct: 107 ILEEVYHTSPGLANGMIPNDPELPLPLNQVHPIHEVVKVDYFMPGCPPSADAI 159


>gi|11498969|ref|NP_070202.1| methylviologen-reducing hydrogenase, subunit gamma (vhuG)
           [Archaeoglobus fulgidus DSM 4304]
 gi|2649199|gb|AAB89871.1| methylviologen-reducing hydrogenase, subunit gamma (vhuG)
           [Archaeoglobus fulgidus DSM 4304]
          Length = 293

 Score = 42.6 bits (99), Expect = 0.026,   Method: Composition-based stats.
 Identities = 12/33 (36%), Positives = 18/33 (54%)

Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175
           V+  D +V VD Y+ GCPPT E +      + +
Sbjct: 127 VKPLDSVVEVDCYIGGCPPTPEQIYNAFKAIFE 159


>gi|20093976|ref|NP_613823.1| coenzyme F420-reducing hydrogenase, gamma subunit [Methanopyrus
           kandleri AV19]
 gi|19886938|gb|AAM01753.1| Coenzyme F420-reducing hydrogenase, gamma subunit [Methanopyrus
           kandleri AV19]
          Length = 238

 Score = 42.6 bits (99), Expect = 0.028,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 40/92 (43%), Gaps = 9/92 (9%)

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY--------YHYSYS-VV 143
           +D++ V G +    A  L ++ +       V+S+GSCA  GG+            Y   V
Sbjct: 43  ADILFVEGAVDFADAETLEKLEEAASAVSTVVSLGSCAATGGFERHVIGMRDPDRYHFTV 102

Query: 144 RGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175
               + V  D  + GCPPT + +   +  L++
Sbjct: 103 FPAAKFVETDYAINGCPPTTDVIASFLRALEE 134


>gi|126180116|ref|YP_001048081.1| coenzyme F420 hydrogenase [Methanoculleus marisnigri JR1]
 gi|125862910|gb|ABN58099.1| coenzyme F420-reducing hydrogenase, gamma subunit [Methanoculleus
           marisnigri JR1]
          Length = 263

 Score = 42.6 bits (99), Expect = 0.028,   Method: Composition-based stats.
 Identities = 16/82 (19%), Positives = 33/82 (40%), Gaps = 9/82 (10%)

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYS---------VVR 144
           DV +V G+       ++  + +   + + +++ G CA  G    +               
Sbjct: 65  DVCLVEGSCCLNDKISVEELKEARAKSKVLVAYGGCAAYGNITRFCRGGQWNQPAQEAFV 124

Query: 145 GCDRIVPVDIYVPGCPPTAEAL 166
               +V VD+Y+P CPP  + +
Sbjct: 125 PISEVVDVDLYIPSCPPCPQQV 146


>gi|150398830|ref|YP_001322597.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanococcus
           vannielii SB]
 gi|150011533|gb|ABR53985.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanococcus
           vannielii SB]
          Length = 300

 Score = 42.2 bits (98), Expect = 0.029,   Method: Composition-based stats.
 Identities = 23/126 (18%), Positives = 41/126 (32%), Gaps = 36/126 (28%)

Query: 84  FAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY-------- 135
              +  P   DV ++ G +  +    L    +   + + VI+ G+CA  GG         
Sbjct: 42  MDVKEIPENIDVALIEGGI--RNEENLHTAKEMRKKAKIVIAFGTCAVYGGVPGMGNLHS 99

Query: 136 --------YHYSYSV------------------VRGCDRIVPVDIYVPGCPPTAEALIYG 169
                   Y  + +                   V     ++ VD  +PGCPP  E +   
Sbjct: 100 NDALLEKAYKTTVTTKNEEGIIPSEEVPKLTSRVMPLSEVIDVDYILPGCPPKPELIANV 159

Query: 170 ILLLQK 175
           +  L +
Sbjct: 160 LTSLLE 165


>gi|159899902|ref|YP_001546149.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159892941|gb|ABX06021.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Herpetosiphon
           aurantiacus ATCC 23779]
          Length = 124

 Score = 42.2 bits (98), Expect = 0.030,   Method: Composition-based stats.
 Identities = 19/86 (22%), Positives = 39/86 (45%), Gaps = 4/86 (4%)

Query: 88  ASPRQSDVMIVAGTLTNKMASALRRVY-DQMPEPRYVISMGSCANGGGYYHYSYSVVRGC 146
           A+P  +D+ ++ G +   +  AL  V+ D + +   +I++G  +  G  +      +   
Sbjct: 33  ATPAHADIFVLTGPIPLLLRPALSNVWRDFIADRAPLIALGRASIDGHPFGRGG--LAEL 90

Query: 147 DRIVPVDIYVPGCPPTAEALIYGILL 172
              + V   + G PPT  A+  GI+ 
Sbjct: 91  PE-IQVAAKIDGDPPTVAAIQAGIVQ 115


>gi|57234567|ref|YP_181356.1| hydrogenase, group 3, VhuG subunit, putative [Dehalococcoides
           ethenogenes 195]
 gi|57225015|gb|AAW40072.1| hydrogenase, group 3, VhuG subunit, putative [Dehalococcoides
           ethenogenes 195]
          Length = 312

 Score = 42.2 bits (98), Expect = 0.031,   Method: Composition-based stats.
 Identities = 18/110 (16%), Positives = 41/110 (37%), Gaps = 35/110 (31%)

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY---------------- 135
           ++D+ ++ G +  +         +   + + ++++G+CA  GG                 
Sbjct: 60  EADLGLITGGI--RNEENKELALEMRKKCKIIVALGTCACFGGIPALANLSTTEAMLDQI 117

Query: 136 YHYSYSV-----------------VRGCDRIVPVDIYVPGCPPTAEALIY 168
           ++                      V   D ++ VDI++PGCPPT   ++ 
Sbjct: 118 FNKEKGTDPSSPPSDKSLPKLLDRVYAVDEVIKVDIHLPGCPPTPAHIVE 167


>gi|282165443|ref|YP_003357828.1| F420-non-reducing hydrogenase subunit G [Methanocella paludicola
           SANAE]
 gi|282157757|dbj|BAI62845.1| F420-non-reducing hydrogenase subunit G [Methanocella paludicola
           SANAE]
          Length = 304

 Score = 42.2 bits (98), Expect = 0.036,   Method: Composition-based stats.
 Identities = 32/156 (20%), Positives = 54/156 (34%), Gaps = 44/156 (28%)

Query: 60  FGLACCAV---EMMQASMPRYDLERFGFAP----RASPRQSDVMIVAGTLTNKMASALRR 112
              A C +   ++ +A +P  D   F + P       P ++ V IV+G +  + +  L  
Sbjct: 13  GACAGCEISVLDLHEALLPVLDKIEFVYIPVLMDTKHPPKATVGIVSGGV--RNSDNLHE 70

Query: 113 VYDQMPEPRYVISMGSCANGGG-------------------------------YYHYSYS 141
           + +       +I++GSCA  GG                                Y     
Sbjct: 71  LLEIRKNCDILIALGSCACFGGTPGMANLYDLNALLEEVYMTTKSTKNDINRLPYMDGLP 130

Query: 142 VV----RGCDRIVPVDIYVPGCPPTAEALIYGILLL 173
            +    R     V VD+ +PGC PT   +   I+ L
Sbjct: 131 TLMPDMRPASDYVKVDVMIPGCGPTPAMIGAAIMSL 166


>gi|327401445|ref|YP_004342284.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Archaeoglobus
           veneficus SNP6]
 gi|327316953|gb|AEA47569.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Archaeoglobus
           veneficus SNP6]
          Length = 327

 Score = 41.8 bits (97), Expect = 0.038,   Method: Composition-based stats.
 Identities = 10/33 (30%), Positives = 18/33 (54%)

Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175
            +  D ++ VD Y+PGCPP+   ++     L +
Sbjct: 149 CKALDEVIDVDYYIPGCPPSVNIIVDAFTALLE 181


>gi|27382055|ref|NP_773584.1| HupU protein [Bradyrhizobium japonicum USDA 110]
 gi|530183|gb|AAA62627.1| hupU [Bradyrhizobium japonicum USDA 110]
 gi|27355225|dbj|BAC52209.1| HupU protein [Bradyrhizobium japonicum USDA 110]
          Length = 338

 Score = 41.8 bits (97), Expect = 0.040,   Method: Composition-based stats.
 Identities = 38/182 (20%), Positives = 59/182 (32%), Gaps = 56/182 (30%)

Query: 50  ARTGSLMWMTFGLACCAVEMMQASMPR-YD-LERFGFAPRASPR---------------- 91
             T  L         C + ++++     +D L +FG      P                 
Sbjct: 6   GTTNVLWLQGASCGGCTMSILESGASGWFDELRQFGINLLWHPSVSEETGEEAVEVLQSV 65

Query: 92  -----QSDVMIVAGTLTN--------KM-----ASALRRVYDQMPEPRYVISMGSCANGG 133
                Q D++++ G++           M      S  R + D  P   YVI++GSCA  G
Sbjct: 66  LDGKVQLDLLLLEGSVARGPNDSGRFNMLAGTNRSVYRWMLDLAPLADYVIAVGSCAAYG 125

Query: 134 GY--------------Y--HYSYSVVRGCDR---IVPVDIYVPGCPPTAEALIYGILLLQ 174
           G               +    S   +    R    +PV I V GC P    ++  IL L 
Sbjct: 126 GVPAAGSNPTDAVGLQFEGSDSGGALGAGFRSRLGLPV-INVAGCAPHPGWMMETILALT 184

Query: 175 KK 176
            K
Sbjct: 185 SK 186


>gi|78188225|ref|YP_378563.1| hydrogenase/sulfur reductase, delta subunit [Chlorobium
           chlorochromatii CaD3]
 gi|78170424|gb|ABB27520.1| hydrogenase/sulfur reductase, delta subunit [Chlorobium
           chlorochromatii CaD3]
          Length = 247

 Score = 41.8 bits (97), Expect = 0.040,   Method: Composition-based stats.
 Identities = 21/87 (24%), Positives = 36/87 (41%), Gaps = 23/87 (26%)

Query: 94  DVMIVAGTLTNKMA-SALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSV--------- 142
           D+ ++ G++T +     L  + +Q    + V++ GSCA  GG     +Y           
Sbjct: 55  DIALIEGSVTRQDEVERLLAIREQ---AKVVVAFGSCACFGGVNSLKNYHTISDCVHTVY 111

Query: 143 ---------VRGCDRIVPVDIYVPGCP 160
                    VR    ++ VD  +PGCP
Sbjct: 112 GNMAVETLPVRKISDVIAVDFSIPGCP 138


>gi|147920870|ref|YP_685323.1| coenzyme F420-non-reducing hydrogenase (methyl viologen-reducing
           hydrogenase), gamma subunit [uncultured methanogenic
           archaeon RC-I]
 gi|110620719|emb|CAJ35997.1| coenzyme F420-non-reducing hydrogenase (methyl viologen-reducing
           hydrogenase), gamma subunit [uncultured methanogenic
           archaeon RC-I]
          Length = 305

 Score = 41.8 bits (97), Expect = 0.041,   Method: Composition-based stats.
 Identities = 30/157 (19%), Positives = 51/157 (32%), Gaps = 46/157 (29%)

Query: 60  FGLACCAV---EMMQASMPRYDLERFGFAPR-----ASPRQSDVMIVAGTLTNKMASALR 111
              A C +   +  +A +P  D   F + P        P+ + V IV+G +  + +  L 
Sbjct: 12  GACAGCEISVLDTHEALLPILDKIEFVYIPVLMDTKHIPK-ATVGIVSGCV--RNSDNLH 68

Query: 112 RVYDQMPEPRYVISMGSCANGGG-------------------------------YYHYSY 140
            + +       ++++GSCA  GG                                Y    
Sbjct: 69  ELLEMRKNVDILVALGSCACFGGTPGMANLYTPEQLLEEVYVTTKSTKNEIQRHPYMDGL 128

Query: 141 SVV----RGCDRIVPVDIYVPGCPPTAEALIYGILLL 173
             +    +     V VD  +PGC P    +   IL L
Sbjct: 129 PTLLPDAKPLSDYVKVDAMIPGCGPRPAMIAQAILSL 165


>gi|116624101|ref|YP_826257.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Candidatus
           Solibacter usitatus Ellin6076]
 gi|116227263|gb|ABJ85972.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Candidatus
           Solibacter usitatus Ellin6076]
          Length = 176

 Score = 41.8 bits (97), Expect = 0.044,   Method: Composition-based stats.
 Identities = 13/32 (40%), Positives = 21/32 (65%)

Query: 144 RGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175
           R    +VPVD++VPGCPP+A+ +   +  L +
Sbjct: 134 RPVHELVPVDLFVPGCPPSADLIFSVLSELLE 165


>gi|94265736|ref|ZP_01289473.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [delta
           proteobacterium MLMS-1]
 gi|93453749|gb|EAT04125.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [delta
           proteobacterium MLMS-1]
          Length = 176

 Score = 41.4 bits (96), Expect = 0.049,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 52/128 (40%), Gaps = 35/128 (27%)

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANG----------------- 132
           P   D+ ++ G ++N       ++  Q    + V+++G CA G                 
Sbjct: 49  PEHVDLTLLEGAVSNDDDLEKAKLVRQ--RSKLVVALGDCAVGTNVPGMRNTLEREAILQ 106

Query: 133 -----------GGYYHYSYSVVR---GCDRIVPVDIYVPGCPPTAEALIYGI--LLLQKK 176
                      G       +++       +++ VD+++PGCPP A A++  +  +L Q++
Sbjct: 107 LIYHKLADHAPGIPTEQIPALLPQSLPLHQVIRVDLFLPGCPPPAAAIVQALNAVLAQQE 166

Query: 177 IRRVGNVK 184
           +  +  +K
Sbjct: 167 LSELPTLK 174


>gi|288574749|ref|ZP_06393106.1| Hydrogen dehydrogenase [Dethiosulfovibrio peptidovorans DSM 11002]
 gi|288570490|gb|EFC92047.1| Hydrogen dehydrogenase [Dethiosulfovibrio peptidovorans DSM 11002]
          Length = 179

 Score = 41.4 bits (96), Expect = 0.063,   Method: Composition-based stats.
 Identities = 12/31 (38%), Positives = 19/31 (61%)

Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175
             D  V VD+Y+PGCPP A+ ++Y    + +
Sbjct: 135 PIDDEVKVDVYIPGCPPDADTILYVFQEILE 165


>gi|261402833|ref|YP_003247057.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanocaldococcus
           vulcanius M7]
 gi|261369826|gb|ACX72575.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanocaldococcus
           vulcanius M7]
          Length = 299

 Score = 41.4 bits (96), Expect = 0.063,   Method: Composition-based stats.
 Identities = 26/127 (20%), Positives = 43/127 (33%), Gaps = 43/127 (33%)

Query: 84  FAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY-------- 135
              +  P   D+ ++ G + NK         +   + + VI+ G+CA  GG         
Sbjct: 42  MDVKEIPNDIDIALIEGGIRNK--ENEEIAKEMRKKAKIVIAFGTCAVFGGVPGLGNLYS 99

Query: 136 --------YHYSYSV------------------VRGCDRIVPVDIYVPGCPPTAE----- 164
                   Y  + S                   V+    ++ VD ++PGCPP  E     
Sbjct: 100 KDEILEKVYKSTLSTKNDEGIIPNEEVPPLTSRVKPLSEVIDVDYFIPGCPPDPELTAKV 159

Query: 165 --ALIYG 169
             AL+ G
Sbjct: 160 LSALLEG 166


>gi|332159193|ref|YP_004424472.1| hydrogenase (cytochrome-c3 hydrogenase delta chain) [Pyrococcus sp.
           NA2]
 gi|331034656|gb|AEC52468.1| hydrogenase (cytochrome-c3 hydrogenase delta chain) [Pyrococcus sp.
           NA2]
          Length = 239

 Score = 41.1 bits (95), Expect = 0.064,   Method: Composition-based stats.
 Identities = 27/102 (26%), Positives = 44/102 (43%), Gaps = 22/102 (21%)

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY-----------YHYSYSV 142
           DV IV G+++ +    L  V +      Y+I++G+CA  GG                Y  
Sbjct: 51  DVAIVTGSVSTQ--RDLEVVKEARNRAEYLIALGTCATHGGVQGGLENSVKENMKKVYGD 108

Query: 143 VRGCDRI---------VPVDIYVPGCPPTAEALIYGILLLQK 175
           +RG  ++         VPVD  +PGCP   E +   ++ + K
Sbjct: 109 IRGPTKVLEPRAVIDYVPVDFAIPGCPYEKEEVFQVLIDIAK 150


>gi|270307974|ref|YP_003330032.1| nickel-dependent hydrogenase, group 3, small subunit
           [Dehalococcoides sp. VS]
 gi|270153866|gb|ACZ61704.1| nickel-dependent hydrogenase, group 3, small subunit
           [Dehalococcoides sp. VS]
          Length = 312

 Score = 41.1 bits (95), Expect = 0.067,   Method: Composition-based stats.
 Identities = 20/110 (18%), Positives = 40/110 (36%), Gaps = 35/110 (31%)

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGG----------------Y 135
           ++D+ I+ G +  +         +   + + ++++G+CA  GG                 
Sbjct: 60  EADLGIITGGI--RNEENRELALEMRKKCKLIVALGTCACFGGIPALANLSTTEDMLKQV 117

Query: 136 YHYSYSV-----------------VRGCDRIVPVDIYVPGCPPTAEALIY 168
           +                       V   D I+ VDI++PGCPPT   ++ 
Sbjct: 118 FSKEKGTDPASPPGDKSLPKMLDRVYAVDEIITVDIHLPGCPPTPAHIVE 167


>gi|83956303|ref|ZP_00964744.1| copper-translocating P-type ATPase [Sulfitobacter sp. NAS-14.1]
 gi|83839524|gb|EAP78705.1| copper-translocating P-type ATPase [Sulfitobacter sp. NAS-14.1]
          Length = 644

 Score = 41.1 bits (95), Expect = 0.070,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 27/54 (50%)

Query: 78  DLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCAN 131
           DL         +PR ++++IV G L   +  A    Y Q+P PR ++++G+   
Sbjct: 43  DLSGSHLRLVGTPRHANLLIVVGPLPPGLRDAAAVTYAQIPRPRAILALGAGDI 96


>gi|291614073|ref|YP_003524230.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Sideroxydans
           lithotrophicus ES-1]
 gi|291584185|gb|ADE11843.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Sideroxydans
           lithotrophicus ES-1]
          Length = 179

 Score = 41.1 bits (95), Expect = 0.071,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 44/121 (36%), Gaps = 35/121 (28%)

Query: 79  LERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGG---- 134
            +R            D+ IV G + N  A  +  +++     + +I++G+CA  GG    
Sbjct: 38  FDRSPITDIKHCGPCDIGIVEGGVCN--AENVHVLHEFRKNCKILIAIGACAINGGLPAQ 95

Query: 135 ------------YYHYSYSV-----------------VRGCDRIVPVDIYVPGCPPTAEA 165
                        Y     +                 V     +V +D ++PGCPP+A+A
Sbjct: 96  RNHLDLASCLTEVYLTEPGLEHGHIPNDPELPLPLDKVHPLHEVVKIDYFIPGCPPSADA 155

Query: 166 L 166
           +
Sbjct: 156 I 156


>gi|289811568|ref|ZP_06542197.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
           serovar Typhi str. AG3]
          Length = 64

 Score = 41.1 bits (95), Expect = 0.071,   Method: Composition-based stats.
 Identities = 10/24 (41%), Positives = 15/24 (62%)

Query: 158 GCPPTAEALIYGILLLQKKIRRVG 181
           GCPP  EA +  ++LLQ+ I +  
Sbjct: 1   GCPPRPEAYMQALMLLQESIGKER 24


>gi|300088029|ref|YP_003758551.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
 gi|299527762|gb|ADJ26230.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
          Length = 249

 Score = 41.1 bits (95), Expect = 0.080,   Method: Composition-based stats.
 Identities = 28/131 (21%), Positives = 48/131 (36%), Gaps = 32/131 (24%)

Query: 61  GLACCAV--------EMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRR 112
           G   C +        E++       D+  F         + D+  + G++T +   A  R
Sbjct: 12  GCEGCQLDALNLEPDELLGLLGAV-DIVNFREVRTDRSDEYDIAFIEGSITRESEIA--R 68

Query: 113 VYDQMPEPRYVISMGSCANGGG----------------YYHYS---YSVV--RGCDRIVP 151
           + +       ++++G+CA  GG                 Y      Y  +  R  D +V 
Sbjct: 69  LKEIRERAAVLVALGACACTGGINCMKNAYETEELLKGVYGDCAAYYDTIPTRPADAVVK 128

Query: 152 VDIYVPGCPPT 162
           VD Y+ GCPPT
Sbjct: 129 VDAYIRGCPPT 139


>gi|116749227|ref|YP_845914.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Syntrophobacter
           fumaroxidans MPOB]
 gi|116698291|gb|ABK17479.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Syntrophobacter
           fumaroxidans MPOB]
          Length = 312

 Score = 40.7 bits (94), Expect = 0.084,   Method: Composition-based stats.
 Identities = 11/31 (35%), Positives = 16/31 (51%)

Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLL 173
           V   D  + VDIY+PGC P  + +   +  L
Sbjct: 142 VYALDEKIKVDIYLPGCAPHPDQVFAALAGL 172


>gi|319790092|ref|YP_004151725.1| coenzyme F420 hydrogenase, subunit gamma [Thermovibrio ammonificans
           HB-1]
 gi|317114594|gb|ADU97084.1| coenzyme F420 hydrogenase, subunit gamma [Thermovibrio ammonificans
           HB-1]
          Length = 246

 Score = 40.7 bits (94), Expect = 0.086,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 39/97 (40%), Gaps = 13/97 (13%)

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS------YSVVRG 145
             DV  V G +  +  +  R V +   + + ++++G CA+ GG   +S          + 
Sbjct: 63  HLDVAFVEGAVCIEDRNHARLVRELSEKAKLIVAVGGCASFGGVRRFSRGNQFPQPTHQS 122

Query: 146 CDRIVPVDIY-------VPGCPPTAEALIYGILLLQK 175
              I  V++        +PGCPP    L    L L +
Sbjct: 123 FVPITEVELLRGKIKYAIPGCPPNPSLLYSFFLALLE 159


>gi|294102537|ref|YP_003554395.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Aminobacterium
           colombiense DSM 12261]
 gi|293617517|gb|ADE57671.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Aminobacterium
           colombiense DSM 12261]
          Length = 179

 Score = 40.7 bits (94), Expect = 0.086,   Method: Composition-based stats.
 Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 1/37 (2%)

Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILL-LQKKIRRV 180
             D  V VD+YVPGCPP A+ + Y     LQ +I +V
Sbjct: 135 PVDYEVKVDVYVPGCPPDADTIYYVFEEILQGRIPKV 171


>gi|91780573|ref|YP_555780.1| hydrogen dehydrogenase [Burkholderia xenovorans LB400]
 gi|91693233|gb|ABE36430.1| Hydrogen dehydrogenase [Burkholderia xenovorans LB400]
          Length = 193

 Score = 40.7 bits (94), Expect = 0.089,   Method: Composition-based stats.
 Identities = 35/163 (21%), Positives = 53/163 (32%), Gaps = 53/163 (32%)

Query: 51  RTGSLMWMTFGLACCAVEMMQASMPRYDL-ERF-----GFAPRASP-------RQSDVMI 97
           R   L   T  LA C            D+ ER            SP        Q D+ +
Sbjct: 14  RPRKLKVATVSLAGC----FGCHTSFLDIDERLLELVQHIEFDRSPLTDIKEVGQCDIGL 69

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGG----------------YYHYSYS 141
           + G + N     + R +    +   +++MG+CA  GG                 Y     
Sbjct: 70  IEGGVCNSENVEVLRAFRAHCKT--LVAMGACAINGGLPAERNRFALADVLNEVYRDRAG 127

Query: 142 V------------------VRGCDRIVPVDIYVPGCPPTAEAL 166
           +                  VR    +V VD ++PGCPP+A+A 
Sbjct: 128 LREGSAIPDDPELPVLLQQVRPIHAVVHVDYFLPGCPPSADAF 170


>gi|307721230|ref|YP_003892370.1| hydrogenase (NiFe) small subunit HydA [Sulfurimonas autotrophica
           DSM 16294]
 gi|306979323|gb|ADN09358.1| hydrogenase (NiFe) small subunit HydA [Sulfurimonas autotrophica
           DSM 16294]
          Length = 807

 Score = 40.7 bits (94), Expect = 0.090,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 35/92 (38%), Gaps = 15/92 (16%)

Query: 95  VMIVAGTLTNKMASALRRVY-----------DQMPEPRYVISMGSCANGGGYYHYSYS-- 141
           ++IV G +   M     RV                +   VI++GSCA  GG    S +  
Sbjct: 603 ILIVEGAVPMAMDGKFLRVGPKGETGIELLQKCANDAALVIAVGSCAFDGGVVAASPNPT 662

Query: 142 -VVRGCDRIVPVDI-YVPGCPPTAEALIYGIL 171
             V     +   D+  +PGCP     ++  +L
Sbjct: 663 GAVGVAQALKREDVINIPGCPTNPTNIVGTLL 694


>gi|87303133|ref|ZP_01085931.1| hydrogenase small subunit [Synechococcus sp. WH 5701]
 gi|87282300|gb|EAQ74260.1| hydrogenase small subunit [Synechococcus sp. WH 5701]
          Length = 188

 Score = 40.7 bits (94), Expect = 0.090,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 3/33 (9%)

Query: 143 VRGCDRIVPVDIYVPGCPPTAE---ALIYGILL 172
           V     +VPVD+++PGCPP AE   A++  +L 
Sbjct: 141 VLPVHELVPVDLFLPGCPPPAERIRAVLDALLR 173


>gi|222445297|ref|ZP_03607812.1| hypothetical protein METSMIALI_00925 [Methanobrevibacter smithii
           DSM 2375]
 gi|261350142|ref|ZP_05975559.1| f420-non-reducing hydrogenase subunit G [Methanobrevibacter smithii
           DSM 2374]
 gi|222434862|gb|EEE42027.1| hypothetical protein METSMIALI_00925 [Methanobrevibacter smithii
           DSM 2375]
 gi|288860928|gb|EFC93226.1| f420-non-reducing hydrogenase subunit G [Methanobrevibacter smithii
           DSM 2374]
          Length = 308

 Score = 40.7 bits (94), Expect = 0.095,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 45/118 (38%), Gaps = 40/118 (33%)

Query: 94  DVMIVAGTL-TNKMASALRRVYDQMPEPRYVISMGSCANGGGY----------------Y 136
           DV+IV G +   +       + +   + + VI+ G+C+  GG                 Y
Sbjct: 56  DVLIVEGGIRNEENRELAEMLNE---KAKLVIAYGTCSCYGGIPGLGNLWTVDELEQEAY 112

Query: 137 HYSYSVVRGCDRIVP-------------------VDIYVPGCPPTAEALIYGILLLQK 175
             S S V   + I+P                   VD+ +PGCPP ++ +   +L L +
Sbjct: 113 INSCSTVNP-EGIIPNEDVPALESRVRPLSSAMDVDLIIPGCPPRSDVVAEAVLTLLR 169


>gi|119510365|ref|ZP_01629500.1| hydrogenase small subunit [Nodularia spumigena CCY9414]
 gi|119465002|gb|EAW45904.1| hydrogenase small subunit [Nodularia spumigena CCY9414]
          Length = 181

 Score = 40.7 bits (94), Expect = 0.095,   Method: Composition-based stats.
 Identities = 26/111 (23%), Positives = 41/111 (36%), Gaps = 36/111 (32%)

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY-------------- 135
           P+  DV++V G +       L+ ++      R ++S G CA  G                
Sbjct: 49  PQGVDVVLVEGAV--ANEDHLQMIHQVRERSRILVSFGDCAVTGNVTALRNPLGSAEPVL 106

Query: 136 ---YHYSYSVVR-----------------GCDRIVPVDIYVPGCPPTAEAL 166
              Y  +  +                      +IVPVDIY+PGCPP+A  +
Sbjct: 107 QRCYIEAADIHGQIPHEPGIVPTLLDRVVPVHKIVPVDIYMPGCPPSATRI 157


>gi|75910855|ref|YP_325151.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Anabaena variabilis
           ATCC 29413]
 gi|75704580|gb|ABA24256.1| NAD(P)-dependent nickel-iron dehydrogenase subunit HoxY [Anabaena
           variabilis ATCC 29413]
          Length = 181

 Score = 40.7 bits (94), Expect = 0.099,   Method: Composition-based stats.
 Identities = 18/35 (51%), Positives = 22/35 (62%), Gaps = 1/35 (2%)

Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGIL-LLQKK 176
           V     IVPVDIY+PGCPP+A  +   +  LLQ K
Sbjct: 134 VTPVHSIVPVDIYLPGCPPSATRIRAALEPLLQGK 168


>gi|315504986|ref|YP_004083873.1| hypothetical protein ML5_4220 [Micromonospora sp. L5]
 gi|315411605|gb|ADU09722.1| hypothetical protein ML5_4220 [Micromonospora sp. L5]
          Length = 532

 Score = 40.3 bits (93), Expect = 0.11,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 4/57 (7%)

Query: 76  RYDLERF----GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGS 128
           R  +ER     G+    SP ++D++ V G   +++A  L R+++QMP PR  I + S
Sbjct: 29  RAAVERHVLARGWRLALSPAEADILAVCGPPPSQLAEPLHRLWEQMPGPRARIDVES 85


>gi|257053168|ref|YP_003131001.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Halorhabdus
           utahensis DSM 12940]
 gi|256691931|gb|ACV12268.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Halorhabdus
           utahensis DSM 12940]
          Length = 191

 Score = 40.3 bits (93), Expect = 0.12,   Method: Composition-based stats.
 Identities = 14/32 (43%), Positives = 19/32 (59%)

Query: 144 RGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175
           R  D  + VD+YVPGCPP AE +   +  L +
Sbjct: 146 RPLDEYIDVDVYVPGCPPDAEVMKESLEALAR 177


>gi|1032479|emb|CAA55876.1| hydrogenase small subunit [Anabaena variabilis ATCC 29413]
          Length = 205

 Score = 40.3 bits (93), Expect = 0.12,   Method: Composition-based stats.
 Identities = 18/35 (51%), Positives = 22/35 (62%), Gaps = 1/35 (2%)

Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGIL-LLQKK 176
           V     IVPVDIY+PGCPP+A  +   +  LLQ K
Sbjct: 158 VTPVHSIVPVDIYLPGCPPSATRIRAALEPLLQGK 192


>gi|288941584|ref|YP_003443824.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Allochromatium
           vinosum DSM 180]
 gi|288896956|gb|ADC62792.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Allochromatium
           vinosum DSM 180]
          Length = 180

 Score = 40.3 bits (93), Expect = 0.12,   Method: Composition-based stats.
 Identities = 14/31 (45%), Positives = 21/31 (67%)

Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLL 173
           V+     V VD++VPGCPP+A+A+ Y +  L
Sbjct: 134 VKPVHGEVKVDVFVPGCPPSADAIWYVLSEL 164


>gi|46580326|ref|YP_011134.1| periplasmic [NiFeSe] hydrogenase small subunit [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|120602295|ref|YP_966695.1| hydrogenase (NiFe) small subunit HydA [Desulfovibrio vulgaris DP4]
 gi|284449405|pdb|2WPN|A Chain A, Structure Of The Oxidised, As-Isolated Nifese Hydrogenase
           From D. Vulgaris Hildenborough
 gi|46449743|gb|AAS96393.1| periplasmic [NiFeSe] hydrogenase, small subunit [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|120562524|gb|ABM28268.1| hydrogenase (NiFe) small subunit HydA [Desulfovibrio vulgaris DP4]
 gi|311233694|gb|ADP86548.1| hydrogenase (NiFe) small subunit HydA [Desulfovibrio vulgaris RCH1]
          Length = 317

 Score = 40.3 bits (93), Expect = 0.12,   Method: Composition-based stats.
 Identities = 23/110 (20%), Positives = 46/110 (41%), Gaps = 11/110 (10%)

Query: 82  FGFAPRASPRQSDV-MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSY 140
           F     + P ++D    + G   +   S +  + +  P    V+++G+CA  GG      
Sbjct: 107 FLVIEGSVPVEADGKYCIIGEANHHEISMVDALKEFGPNAAAVLAVGTCAAYGGIPAAEG 166

Query: 141 SVVRG--CDRIV-------PVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
           S        + +       PV + +PGCPP  + ++  ++L    I++ G
Sbjct: 167 SETGATAVSKFLGDNGIKTPV-VNIPGCPPHPDWIVGTVVLALDAIKKNG 215


>gi|288561163|ref|YP_003424649.1| methyl viologen-reducing hydrogenase gamma subunit MvhG
           [Methanobrevibacter ruminantium M1]
 gi|288543873|gb|ADC47757.1| methyl viologen-reducing hydrogenase gamma subunit MvhG
           [Methanobrevibacter ruminantium M1]
          Length = 308

 Score = 40.3 bits (93), Expect = 0.13,   Method: Composition-based stats.
 Identities = 35/168 (20%), Positives = 61/168 (36%), Gaps = 49/168 (29%)

Query: 50  ARTGSLMWMTFGLACCA---VEMMQASMPRYDLERFGFAPR------ASPRQSDVMIVAG 100
           A+ G++     G + C     +  ++ +   +L +F F+P           + DV+IV G
Sbjct: 5   AKVGTMW--LGGCSGCHLSIADFHESLLDVLELAQFEFSPVLCDTKYDEVPELDVLIVEG 62

Query: 101 TL-TNKMASALRRVYDQMPEPRYVISMGSCANGGGY----------------YHYSYSVV 143
            +   +       + +   +   VI+ G+CA  GG                 Y  S S V
Sbjct: 63  GIRNEENRELAEMLRE---KAGLVIAYGTCAAYGGIPGLGNLHTVEELTTEGYINSCSTV 119

Query: 144 ------------------RGCDRIVPVDIYVPGCPPTAEALIYGILLL 173
                             R     + VD+ +PGCPP ++ +   IL L
Sbjct: 120 NPEGIIPNEDVPTLESRVRPLGEAIQVDLLIPGCPPKSDVVAEAILTL 167


>gi|212223198|ref|YP_002306434.1| Sulfhydrogenase II, delta chain [Thermococcus onnurineus NA1]
 gi|212008155|gb|ACJ15537.1| Sulfhydrogenase II, delta chain [Thermococcus onnurineus NA1]
          Length = 246

 Score = 40.3 bits (93), Expect = 0.13,   Method: Composition-based stats.
 Identities = 23/89 (25%), Positives = 37/89 (41%), Gaps = 22/89 (24%)

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY---------------Y 136
             DV +V GT++++   AL +  +      Y+I++G+CA  G                 Y
Sbjct: 52  HYDVALVTGTVSSQRDLALLK--EARNHSDYLIALGTCATHGSVQASVEGSIREKLKRVY 109

Query: 137 HYSYSVVRGCD-----RIVPVDIYVPGCP 160
               + +R  D       V VD  +PGCP
Sbjct: 110 GDEGNPMRALDSKPVVEYVAVDFALPGCP 138


>gi|189501050|ref|YP_001960520.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Chlorobium
           phaeobacteroides BS1]
 gi|189496491|gb|ACE05039.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Chlorobium
           phaeobacteroides BS1]
          Length = 254

 Score = 39.9 bits (92), Expect = 0.14,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 36/92 (39%), Gaps = 21/92 (22%)

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY------YHYSYSV----- 142
           D+ +V G++T +               + +++ GSCA  GG       +    +V     
Sbjct: 59  DIALVEGSITRQDEVERLETIR--KNAKVLVAYGSCACFGGVNSLKNNFPLDQAVREVYG 116

Query: 143 --------VRGCDRIVPVDIYVPGCPPTAEAL 166
                   VR    +V VD  +PGCP + E +
Sbjct: 117 DKSVDTLPVRKISDVVKVDYSIPGCPVSKEEV 148


>gi|289432499|ref|YP_003462372.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Dehalococcoides sp.
           GT]
 gi|288946219|gb|ADC73916.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Dehalococcoides sp.
           GT]
          Length = 312

 Score = 39.9 bits (92), Expect = 0.14,   Method: Composition-based stats.
 Identities = 22/108 (20%), Positives = 41/108 (37%), Gaps = 35/108 (32%)

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY---------------- 135
           ++D+ I+ G +  +         +   + + ++++G+CA  GG                 
Sbjct: 60  EADLGIITGGI--RNEENRELALEMRKKCKIIVALGTCACFGGIPALANLSTTEEMMEQI 117

Query: 136 YH--------YSYS---------VVRGCDRIVPVDIYVPGCPPTAEAL 166
           Y          S S          V   D ++ VDI++PGCPPT   +
Sbjct: 118 YSKEKGTEKSDSPSDKSLPKMLDRVYAVDEMIKVDIHLPGCPPTPAHI 165


>gi|297619112|ref|YP_003707217.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanococcus voltae
           A3]
 gi|297378089|gb|ADI36244.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanococcus voltae
           A3]
          Length = 303

 Score = 39.9 bits (92), Expect = 0.14,   Method: Composition-based stats.
 Identities = 23/126 (18%), Positives = 41/126 (32%), Gaps = 36/126 (28%)

Query: 84  FAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY--YHYSYS 141
              +  P   DV ++ G +  +    L    +   + + V++ G+CA  GG       YS
Sbjct: 42  MDVKEIPNDIDVALIEGGI--RNEENLHTAKEMRKKAKIVVAFGTCAVYGGIPGMGNLYS 99

Query: 142 V--------------------------------VRGCDRIVPVDIYVPGCPPTAEALIYG 169
                                            V    +++ VD  +PGCPP  E +   
Sbjct: 100 NEEILEKAYKTTLTTKNDEGIIPNEEVPPLTSRVVPLSQVIDVDYILPGCPPKPELIASV 159

Query: 170 ILLLQK 175
           +  L +
Sbjct: 160 LTALLE 165


>gi|84489136|ref|YP_447368.1| MvhG [Methanosphaera stadtmanae DSM 3091]
 gi|84372455|gb|ABC56725.1| MvhG [Methanosphaera stadtmanae DSM 3091]
          Length = 305

 Score = 39.9 bits (92), Expect = 0.14,   Method: Composition-based stats.
 Identities = 33/163 (20%), Positives = 57/163 (34%), Gaps = 53/163 (32%)

Query: 60  FGLACCAV---EMMQASMPRYDLERFGFAPR------ASPRQSDVMIVAGTL----TNKM 106
            G + C +   ++ +  +   D+  F F+P             D++ + G +      ++
Sbjct: 13  GGCSGCHIALTDLHELLLDVLDVAEFEFSPVLMDTKYDEIPHMDIIFIEGGIRNEENREL 72

Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGY----------------YHYSYSVV------- 143
           A  LR       +   V++ GSCA  GG                 Y  S S V       
Sbjct: 73  AEVLRE------KADMVVAYGSCAEFGGIPGLGNLYTPEELEEEAYLNSCSTVNPDGIIP 126

Query: 144 -----------RGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175
                      R    ++ VD  +PGCPP +E +   ++ L K
Sbjct: 127 SESVPHLESRVRPLADVIKVDAALPGCPPKSEVIAQVVIALVK 169


>gi|325294937|ref|YP_004281451.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfurobacterium
           thermolithotrophum DSM 11699]
 gi|325065385|gb|ADY73392.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfurobacterium
           thermolithotrophum DSM 11699]
          Length = 261

 Score = 39.9 bits (92), Expect = 0.15,   Method: Composition-based stats.
 Identities = 29/149 (19%), Positives = 53/149 (35%), Gaps = 35/149 (23%)

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPR---------ASPRQSDVMIVAGTLTNKMASALR 111
           G + C  E++      Y L   G              S  + D++ V G++T  +     
Sbjct: 11  GCSGCQCEILNCKDALYKL--LGKVEFCYFPLAQDNNSFEEFDILFVEGSVTTDLDE--E 66

Query: 112 RVYDQMPEPRYVISMGSCANGGGY----------------------YHYSYSVVRGCDRI 149
           +V       + ++++GSCA  GG                       +  + S  +    I
Sbjct: 67  KVKKGRKVSKILVAIGSCACYGGVQAQRNDEVTLEEMLKEVYGTTEFPVNVSKPKAVSEI 126

Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIR 178
           V VD  +PGCP   +  +Y +  L   ++
Sbjct: 127 VKVDYELPGCPLDKKQFVYAVAFLLNGVK 155


>gi|94266349|ref|ZP_01290050.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [delta
           proteobacterium MLMS-1]
 gi|93453063|gb|EAT03545.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [delta
           proteobacterium MLMS-1]
          Length = 362

 Score = 39.9 bits (92), Expect = 0.16,   Method: Composition-based stats.
 Identities = 11/34 (32%), Positives = 17/34 (50%)

Query: 140 YSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLL 173
           Y  V+    +V VD ++PGCPP    +   +  L
Sbjct: 148 YDRVQTLADVVAVDFFIPGCPPEPPRIWQAVESL 181


>gi|94266316|ref|ZP_01290018.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [delta
           proteobacterium MLMS-1]
 gi|93453070|gb|EAT03549.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [delta
           proteobacterium MLMS-1]
          Length = 74

 Score = 39.9 bits (92), Expect = 0.16,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 27/42 (64%), Gaps = 2/42 (4%)

Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGI--LLLQKKIRRVGNVK 184
              +++ VD+++PGCPP A A++  +  +L Q+++  +  +K
Sbjct: 31  PLHQVIRVDLFLPGCPPPAAAIVQALNAVLAQQELSELPTLK 72


>gi|94263615|ref|ZP_01287425.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [delta
           proteobacterium MLMS-1]
 gi|93456035|gb|EAT06186.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [delta
           proteobacterium MLMS-1]
          Length = 366

 Score = 39.9 bits (92), Expect = 0.17,   Method: Composition-based stats.
 Identities = 11/34 (32%), Positives = 17/34 (50%)

Query: 140 YSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLL 173
           Y  V+    +V VD ++PGCPP    +   +  L
Sbjct: 148 YDRVQTLADVVAVDFFIPGCPPEPPRIWQAVESL 181


>gi|94270483|ref|ZP_01291756.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [delta
           proteobacterium MLMS-1]
 gi|93450778|gb|EAT01830.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [delta
           proteobacterium MLMS-1]
          Length = 366

 Score = 39.9 bits (92), Expect = 0.17,   Method: Composition-based stats.
 Identities = 11/34 (32%), Positives = 17/34 (50%)

Query: 140 YSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLL 173
           Y  V+    +V VD ++PGCPP    +   +  L
Sbjct: 148 YDRVQTLADVVAVDFFIPGCPPEPPRIWQAVESL 181


>gi|327401725|ref|YP_004342564.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Archaeoglobus
           veneficus SNP6]
 gi|327317233|gb|AEA47849.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Archaeoglobus
           veneficus SNP6]
          Length = 317

 Score = 39.9 bits (92), Expect = 0.17,   Method: Composition-based stats.
 Identities = 11/23 (47%), Positives = 17/23 (73%)

Query: 140 YSVVRGCDRIVPVDIYVPGCPPT 162
           Y  V+  D ++ VD++VPGCPP+
Sbjct: 143 YESVKPLDAVIDVDLFVPGCPPS 165


>gi|295107009|emb|CBL04552.1| hydrogenase (NiFe) small subunit (hydA) [Gordonibacter pamelaeae
           7-10-1-b]
          Length = 415

 Score = 39.9 bits (92), Expect = 0.18,   Method: Composition-based stats.
 Identities = 16/80 (20%), Positives = 34/80 (42%), Gaps = 11/80 (13%)

Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCD-------RIVPVDI-YVPG 158
                 + +   +   V+++GSCA  GG+     +               + VD+  +PG
Sbjct: 134 KPGTEHLIEAAEKANAVVALGSCAVNGGWMGAHPNSSGALGVQQFLEKAGIDVDVINIPG 193

Query: 159 CPPTAE---ALIYGILLLQK 175
           CP   E   +++  +++L+K
Sbjct: 194 CPANPEWLVSVLVDVIMLEK 213


>gi|307246251|ref|ZP_07528332.1| Hydrogenase-2 small chain [Actinobacillus pleuropneumoniae serovar
           1 str. 4074]
 gi|307255235|ref|ZP_07537050.1| Hydrogenase-2 small chain [Actinobacillus pleuropneumoniae serovar
           9 str. CVJ13261]
 gi|307259669|ref|ZP_07541393.1| Hydrogenase-2 small chain [Actinobacillus pleuropneumoniae serovar
           11 str. 56153]
 gi|306852860|gb|EFM85084.1| Hydrogenase-2 small chain [Actinobacillus pleuropneumoniae serovar
           1 str. 4074]
 gi|306861784|gb|EFM93763.1| Hydrogenase-2 small chain [Actinobacillus pleuropneumoniae serovar
           9 str. CVJ13261]
 gi|306866314|gb|EFM98178.1| Hydrogenase-2 small chain [Actinobacillus pleuropneumoniae serovar
           11 str. 56153]
          Length = 361

 Score = 39.9 bits (92), Expect = 0.18,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 28/68 (41%), Gaps = 4/68 (5%)

Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGY--YHYSYSVVRGCDRIVP--VDIYVPGCPPT 162
              L  + +   +   +I++GSCA  GG      + +       I+P    I +PGCPP 
Sbjct: 117 KPVLEHIKEAAKDAMAIIAIGSCAAWGGVPSSGNNPTGASSLSDILPGMPIINIPGCPPN 176

Query: 163 AEALIYGI 170
               +  I
Sbjct: 177 PHNFLATI 184


>gi|190150651|ref|YP_001969176.1| hydrogenase-2 small chain precursor [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|307263999|ref|ZP_07545600.1| Hydrogenase-2 small chain [Actinobacillus pleuropneumoniae serovar
           13 str. N273]
 gi|189915782|gb|ACE62034.1| hydrogenase-2 small chain precursor [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|306870688|gb|EFN02431.1| Hydrogenase-2 small chain [Actinobacillus pleuropneumoniae serovar
           13 str. N273]
          Length = 380

 Score = 39.5 bits (91), Expect = 0.18,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 4/65 (6%)

Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGY--YHYSYSVVRGCDRIVP--VDIYVPGCPPT 162
              L  + +   +   +I++GSCA  GG      + +       I+P    I +PGCPP 
Sbjct: 136 KPVLEHIKEAAKDAMAIIAIGSCAAWGGVPSSGNNPTGASSLSDILPGMPIINIPGCPPN 195

Query: 163 AEALI 167
               +
Sbjct: 196 PHNFL 200


>gi|307261817|ref|ZP_07543482.1| Hydrogenase-2 small chain [Actinobacillus pleuropneumoniae serovar
           12 str. 1096]
 gi|306868481|gb|EFN00293.1| Hydrogenase-2 small chain [Actinobacillus pleuropneumoniae serovar
           12 str. 1096]
          Length = 380

 Score = 39.5 bits (91), Expect = 0.19,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 4/65 (6%)

Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGY--YHYSYSVVRGCDRIVP--VDIYVPGCPPT 162
              L  + +   +   +I++GSCA  GG      + +       I+P    I +PGCPP 
Sbjct: 136 KPVLEHIKEAAKDAMAIIAIGSCAAWGGVPSSGNNPTGASSLSDILPGMPIINIPGCPPN 195

Query: 163 AEALI 167
               +
Sbjct: 196 PHNFL 200


>gi|53803148|ref|YP_115126.1| NAD-reducing hydrogenase subunit delta [Methylococcus capsulatus
           str. Bath]
 gi|53756909|gb|AAU91200.1| NAD-reducing hydrogenase, delta subunit [Methylococcus capsulatus
           str. Bath]
          Length = 180

 Score = 39.5 bits (91), Expect = 0.19,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 53/144 (36%), Gaps = 39/144 (27%)

Query: 60  FGLACCAVEMMQASMPRYDLERFGFAPRASPRQS----DVMIVAGTLTNKMASALRRVYD 115
           FG     +++ +  +   ++ RF  +P    +      D+ +V G + N  A  +  + +
Sbjct: 16  FGCHMSFLDIDERILALAEVARFDRSPLTDIKHCRDRVDLGLVEGGVCN--AENVHTLRE 73

Query: 116 QMPEPRYVISMGSCANGGGY----------------YHYSYSV----------------- 142
                R ++++G+CA  GG                 Y     V                 
Sbjct: 74  FRRHCRILVAVGACAINGGLPTLRNPIALEECLQEAYRDGIGVENPQIPDDVELPLLLDK 133

Query: 143 VRGCDRIVPVDIYVPGCPPTAEAL 166
           V     +V VD  +PGCPP+A+ +
Sbjct: 134 VHPIHEVVRVDYSLPGCPPSADVI 157


>gi|165976756|ref|YP_001652349.1| hydrogenase 2 small subunit [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
 gi|303250583|ref|ZP_07336780.1| hydrogenase 2 small subunit [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|303253087|ref|ZP_07339237.1| hydrogenase 2 small subunit [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|307248364|ref|ZP_07530387.1| Hydrogenase-2 small chain [Actinobacillus pleuropneumoniae serovar
           2 str. S1536]
 gi|307250590|ref|ZP_07532532.1| Hydrogenase-2 small chain [Actinobacillus pleuropneumoniae serovar
           4 str. M62]
 gi|307252971|ref|ZP_07534859.1| Hydrogenase-2 small chain [Actinobacillus pleuropneumoniae serovar
           6 str. Femo]
 gi|307257397|ref|ZP_07539167.1| Hydrogenase-2 small chain [Actinobacillus pleuropneumoniae serovar
           10 str. D13039]
 gi|165876857|gb|ABY69905.1| Ni, Fe-hydrogenase I small subunit [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
 gi|302648072|gb|EFL78278.1| hydrogenase 2 small subunit [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|302650571|gb|EFL80730.1| hydrogenase 2 small subunit [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|306855102|gb|EFM87282.1| Hydrogenase-2 small chain [Actinobacillus pleuropneumoniae serovar
           2 str. S1536]
 gi|306857406|gb|EFM89520.1| Hydrogenase-2 small chain [Actinobacillus pleuropneumoniae serovar
           4 str. M62]
 gi|306859609|gb|EFM91634.1| Hydrogenase-2 small chain [Actinobacillus pleuropneumoniae serovar
           6 str. Femo]
 gi|306864247|gb|EFM96160.1| Hydrogenase-2 small chain [Actinobacillus pleuropneumoniae serovar
           10 str. D13039]
          Length = 380

 Score = 39.5 bits (91), Expect = 0.19,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 4/65 (6%)

Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGY--YHYSYSVVRGCDRIVP--VDIYVPGCPPT 162
              L  + +   +   +I++GSCA  GG      + +       I+P    I +PGCPP 
Sbjct: 136 KPVLEHIKEAAKDAMAIIAIGSCAAWGGVPSSGNNPTGASSLSDILPGMPIINIPGCPPN 195

Query: 163 AEALI 167
               +
Sbjct: 196 PHNFL 200


>gi|73748452|ref|YP_307691.1| hydrogenase, group 3, VhuG subunit [Dehalococcoides sp. CBDB1]
 gi|147669232|ref|YP_001214050.1| F420-non-reducing hydrogenase subunit G [Dehalococcoides sp. BAV1]
 gi|73660168|emb|CAI82775.1| hydrogenase, group 3, VhuG subunit [Dehalococcoides sp. CBDB1]
 gi|146270180|gb|ABQ17172.1| F420-non-reducing hydrogenase subunit G [Dehalococcoides sp. BAV1]
          Length = 312

 Score = 39.5 bits (91), Expect = 0.19,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 40/105 (38%), Gaps = 35/105 (33%)

Query: 92  QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY---------------- 135
           ++D+ I+ G +  +         +   + + ++++G+CA  GG                 
Sbjct: 60  EADLGIITGGI--RNEENRELALEMRKKCKIIVALGTCACFGGIPALANLSTTEEMMEQI 117

Query: 136 YH--------YSYS---------VVRGCDRIVPVDIYVPGCPPTA 163
           Y          S S          V   D ++ VDI++PGCPPT 
Sbjct: 118 YSKEKGTEKSDSPSDKSLPKMLDRVYAVDEMIKVDIHLPGCPPTP 162


>gi|126208795|ref|YP_001054020.1| hydrogenase 2 small subunit [Actinobacillus pleuropneumoniae L20]
 gi|126097587|gb|ABN74415.1| hydrogenase-2 small chain precursor [Actinobacillus
           pleuropneumoniae serovar 5b str. L20]
          Length = 380

 Score = 39.5 bits (91), Expect = 0.20,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 4/65 (6%)

Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGY--YHYSYSVVRGCDRIVP--VDIYVPGCPPT 162
              L  + +   +   +I++GSCA  GG      + +       I+P    I +PGCPP 
Sbjct: 136 KPVLEHIKEAAKDAMAIIAIGSCAAWGGVPSSGNNPTGASSLSDILPGMPIINIPGCPPN 195

Query: 163 AEALI 167
               +
Sbjct: 196 PHNFL 200


>gi|53728952|ref|ZP_00134401.2| COG1740: Ni,Fe-hydrogenase I small subunit [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
          Length = 361

 Score = 39.5 bits (91), Expect = 0.20,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 4/65 (6%)

Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGY--YHYSYSVVRGCDRIVP--VDIYVPGCPPT 162
              L  + +   +   +I++GSCA  GG      + +       I+P    I +PGCPP 
Sbjct: 117 KPVLEHIKEAAKDAMAIIAIGSCAAWGGVPSSGNNPTGASSLSDILPGMPIINIPGCPPN 176

Query: 163 AEALI 167
               +
Sbjct: 177 PHNFL 181


>gi|325958127|ref|YP_004289593.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanobacterium sp.
           AL-21]
 gi|325329559|gb|ADZ08621.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanobacterium sp.
           AL-21]
          Length = 309

 Score = 39.5 bits (91), Expect = 0.21,   Method: Composition-based stats.
 Identities = 28/128 (21%), Positives = 45/128 (35%), Gaps = 44/128 (34%)

Query: 84  FAPRASPRQSDVMIVAGTL----TNKMASALRRVYDQMPEPRYVISMGSCANGGGY---- 135
                 P   DV+I+ G +      ++A  LR       + ++VI+ G CA  GG     
Sbjct: 47  VKYDEVPDDLDVLIIEGGIRNDENRELAEMLR------KKAKFVIAYGVCAVYGGIPGLG 100

Query: 136 ------------YHYSYSV------------------VRGCDRIVPVDIYVPGCPPTAEA 165
                       Y  S S                   VR    ++ VD+ +PGCP  ++ 
Sbjct: 101 NLHTADELAQEAYVNSASTYNEEGIIPNEDIPHLESRVRPLSDVIDVDLSIPGCPTRSDV 160

Query: 166 LIYGILLL 173
           L   ++ L
Sbjct: 161 LAEALVAL 168


>gi|195953772|ref|YP_002122062.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Hydrogenobaculum sp.
           Y04AAS1]
 gi|195933384|gb|ACG58084.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Hydrogenobaculum sp.
           Y04AAS1]
          Length = 294

 Score = 39.5 bits (91), Expect = 0.21,   Method: Composition-based stats.
 Identities = 22/104 (21%), Positives = 39/104 (37%), Gaps = 23/104 (22%)

Query: 94  DVMIVAGTLTNKMASALRRVYDQM-----PEPRYVISMGSCANGGGY------------- 135
           D++IV G +   +       +  +      + +YVI++G CA+ GG              
Sbjct: 58  DILIVEGAIGKSIRHVCSYSFSNIVKILSSKAKYVIALGDCASFGGIHAKAGTHITGLQF 117

Query: 136 -YHYSYSVVRGCD---RIVPVDIYVPGCPPTAEALIYGILLLQK 175
            +     ++          PV I + GCP   E + Y I  L +
Sbjct: 118 RFKEFGGLLGKAFLSKSSYPV-INIAGCPAHPEWVYYVISALLE 160


>gi|114777305|ref|ZP_01452316.1| NAD-reducing hydrogenase, delta subunit [Mariprofundus ferrooxydans
           PV-1]
 gi|114552450|gb|EAU54933.1| NAD-reducing hydrogenase, delta subunit [Mariprofundus ferrooxydans
           PV-1]
          Length = 160

 Score = 39.5 bits (91), Expect = 0.21,   Method: Composition-based stats.
 Identities = 26/116 (22%), Positives = 43/116 (37%), Gaps = 35/116 (30%)

Query: 93  SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY----------------Y 136
            D+ ++ G L N  A  +  + +     + +I++G+CA  GG                 Y
Sbjct: 33  CDIGLIEGGLCN--ADNVHVLKEFRENCKIIIAVGACAINGGVPAMRNHFTLKECLEEAY 90

Query: 137 HYSYSV-----------------VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175
                V                 V     +V VD Y+PGCPP A+A +  +  L +
Sbjct: 91  LDGIGVENPMIPNDVELPLLLSKVHPLHEVVHVDYYLPGCPPPADAFMKVLTDLLE 146


>gi|289522158|ref|ZP_06439012.1| NAD-reducing hydrogenase, delta subunit [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
 gi|289503994|gb|EFD25158.1| NAD-reducing hydrogenase, delta subunit [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
          Length = 179

 Score = 39.5 bits (91), Expect = 0.22,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 17/29 (58%)

Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILLL 173
             D  V VD+YVPGCPP A+ + Y    L
Sbjct: 135 PLDYEVKVDVYVPGCPPDADTIYYVFKEL 163


>gi|17228259|ref|NP_484807.1| hydrogenase small subunit [Nostoc sp. PCC 7120]
 gi|17130109|dbj|BAB72721.1| hydrogenase small subunit [Nostoc sp. PCC 7120]
          Length = 181

 Score = 39.5 bits (91), Expect = 0.22,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 20/33 (60%)

Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175
           V     IVPVDIY+PGCPP+A  +   +  L +
Sbjct: 134 VTPVHSIVPVDIYLPGCPPSATRIRAALEPLLQ 166


>gi|1419378|emb|CAA56463.1| hydrogenase small beta subunit [Acetomicrobium flavidum]
          Length = 179

 Score = 39.5 bits (91), Expect = 0.23,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 17/29 (58%)

Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILLL 173
             D  V VD+YVPGCPP A+ + Y    L
Sbjct: 135 PIDYEVKVDVYVPGCPPDADTIYYVFKEL 163


>gi|108802983|ref|YP_642920.1| Ni Fe-hydrogenase III large subunit-like protein [Rubrobacter
           xylanophilus DSM 9941]
 gi|108764226|gb|ABG03108.1| Ni Fe-hydrogenase III large subunit-like protein [Rubrobacter
           xylanophilus DSM 9941]
          Length = 540

 Score = 39.5 bits (91), Expect = 0.23,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 26/55 (47%)

Query: 78  DLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANG 132
           D+E  G      PR + V++V G L   +  A   VY QM  PR V++ G+    
Sbjct: 42  DVEAAGLGMTGVPRHASVLLVVGELPAALRRAAAVVYAQMMRPRAVLAAGAGDLS 96


>gi|14521156|ref|NP_126631.1| hydrogenase (cytochrome-c3 hydrogenase delta chain) [Pyrococcus
           abyssi GE5]
 gi|5458374|emb|CAB49862.1| Sulfhydrogenase II, delta chain [Pyrococcus abyssi GE5]
          Length = 241

 Score = 39.1 bits (90), Expect = 0.26,   Method: Composition-based stats.
 Identities = 26/87 (29%), Positives = 36/87 (41%), Gaps = 22/87 (25%)

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY---------------YHY 138
           DV +V G+++ +    L  V D      Y+I++G+CA  GG                Y  
Sbjct: 53  DVALVTGSVSTQ--RDLEVVKDARNRAEYLIALGTCATHGGVQGSIEGSVKEGLRKIYGD 110

Query: 139 --SYSVV---RGCDRIVPVDIYVPGCP 160
               S V   R     VPVD  +PGCP
Sbjct: 111 MKGPSKVLEPRAVVEHVPVDFAIPGCP 137


>gi|323139688|ref|ZP_08074729.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methylocystis sp.
           ATCC 49242]
 gi|322395067|gb|EFX97627.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methylocystis sp.
           ATCC 49242]
          Length = 265

 Score = 39.1 bits (90), Expect = 0.27,   Method: Composition-based stats.
 Identities = 26/140 (18%), Positives = 46/140 (32%), Gaps = 37/140 (26%)

Query: 52  TGSLMWMTFGLAC------CAVEMMQASMPRYDLERFGFAPRAS----PRQSDVMIVAGT 101
             ++        C      C  E++  +    D     + P A+        D+ +V G+
Sbjct: 9   RLAVWKFASCDGCQLSLLDCEDEILAVA----DAVEIAYFPEATRAAISGHYDISLVEGS 64

Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGY---------------------YHYSY 140
           +T        R+Y+       +I++G+CA  GG                      Y  + 
Sbjct: 65  ITTPHD--AERIYEVRRRSSKLITIGACATSGGIQALRNFADVKEYVSIVYARPDYIDTL 122

Query: 141 SVVRGCDRIVPVDIYVPGCP 160
           +        VPVD  + GCP
Sbjct: 123 AASTPISDHVPVDFELRGCP 142


>gi|303245125|ref|ZP_07331441.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanothermococcus
           okinawensis IH1]
 gi|302484508|gb|EFL47456.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanothermococcus
           okinawensis IH1]
          Length = 300

 Score = 39.1 bits (90), Expect = 0.28,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 42/126 (33%), Gaps = 36/126 (28%)

Query: 84  FAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY--YHYSYS 141
              +  P + D+ I+ G + NK         +   +   VI+ G+CA  GG       YS
Sbjct: 42  MDVKEIPDKVDIAIIEGGIRNK--ENEEIAKEMRKKADIVIAFGTCAAFGGVPGLGNLYS 99

Query: 142 V--------------------------------VRGCDRIVPVDIYVPGCPPTAEALIYG 169
                                            V+   +I+ VD  VPGCPP  E     
Sbjct: 100 NEEILDKVYKTTLTTENEKGSIPNEEVPELTSRVKPLSQIIDVDFVVPGCPPEPEVTAKV 159

Query: 170 ILLLQK 175
           + +L +
Sbjct: 160 LTMLLE 165


>gi|62632272|gb|AAX89151.1| HoxY [Allochromatium vinosum]
          Length = 180

 Score = 39.1 bits (90), Expect = 0.29,   Method: Composition-based stats.
 Identities = 12/24 (50%), Positives = 18/24 (75%)

Query: 143 VRGCDRIVPVDIYVPGCPPTAEAL 166
           V+     V VD++VPGCPP+A+A+
Sbjct: 134 VKPVHGEVKVDVFVPGCPPSADAI 157


>gi|257092623|ref|YP_003166264.1| Hydrogen dehydrogenase [Candidatus Accumulibacter phosphatis clade
           IIA str. UW-1]
 gi|257045147|gb|ACV34335.1| Hydrogen dehydrogenase [Candidatus Accumulibacter phosphatis clade
           IIA str. UW-1]
          Length = 184

 Score = 39.1 bits (90), Expect = 0.31,   Method: Composition-based stats.
 Identities = 29/143 (20%), Positives = 53/143 (37%), Gaps = 38/143 (26%)

Query: 60  FGL--ACCAVEMMQA-SMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQ 116
           FG   +C  ++      + R D +R            D+ ++ G + N  A  +  + + 
Sbjct: 21  FGCHMSCLDIDERLLDLIERVDFDRSPLTDLKECGPCDIGLIEGGICN--AENIHVLREF 78

Query: 117 MPEPRYVISMGSCANGGG----------------YYHYSYSVVR-----------GCDRI 149
               + +I++G+CA  GG                 Y     VV              D++
Sbjct: 79  RRNCKVLIAIGACAVNGGLPAQRNHLDLGLCLQEVYLTGTGVVGGQIPNDPELPLPLDKV 138

Query: 150 VP------VDIYVPGCPPTAEAL 166
            P      VD ++PGCPP+ +A+
Sbjct: 139 HPIHEVVRVDYFIPGCPPSGDAI 161


>gi|83312494|ref|YP_422758.1| NAD-reducing hydrogenase moiety large subunit [Magnetospirillum
           magneticum AMB-1]
 gi|82947335|dbj|BAE52199.1| NAD-reducing hydrogenase hydrogenase moiety small subunit
           [Magnetospirillum magneticum AMB-1]
          Length = 183

 Score = 38.8 bits (89), Expect = 0.32,   Method: Composition-based stats.
 Identities = 24/109 (22%), Positives = 43/109 (39%), Gaps = 34/109 (31%)

Query: 89  SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGG-------------- 134
           SP   D+ I+ G + N  A  +  +++     + +I+MG+CA  GG              
Sbjct: 55  SPD-CDLGIIEGGVCN--AENVHVLHEFRKNCKILIAMGACAINGGLPAQRNSLDIRDIL 111

Query: 135 --YYHYSY---------------SVVRGCDRIVPVDIYVPGCPPTAEAL 166
              Y                   + V     +V +D ++PGCPP+ +A+
Sbjct: 112 AAVYAQPGRGVHIPNDPEIPLLLNEVHPLHEVVKIDYFLPGCPPSGDAI 160


>gi|148643060|ref|YP_001273573.1| methyl viologen-reducing hydrogenase, gamma subunit, MvhG
           [Methanobrevibacter smithii ATCC 35061]
 gi|148552077|gb|ABQ87205.1| methyl viologen-reducing hydrogenase, gamma subunit, MvhG
           [Methanobrevibacter smithii ATCC 35061]
          Length = 308

 Score = 38.8 bits (89), Expect = 0.32,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 45/118 (38%), Gaps = 40/118 (33%)

Query: 94  DVMIVAGTL-TNKMASALRRVYDQMPEPRYVISMGSCANGGGY----------------Y 136
           DV+IV G +   +       + +   + + VI+ G+C+  GG                 Y
Sbjct: 56  DVLIVEGGIRNEENRELAEMLNE---KAKLVIAYGTCSCYGGIPGLGNLWTVDELEQEAY 112

Query: 137 HYSYSVVRGCDRIVP-------------------VDIYVPGCPPTAEALIYGILLLQK 175
             S S V   + I+P                   +D+ +PGCPP ++ +   +L L +
Sbjct: 113 INSCSTVNP-EGIIPNEDVPALESRVRPLSSAMDIDLIIPGCPPRSDVVAEAVLTLLR 169


>gi|163846762|ref|YP_001634806.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Chloroflexus
           aurantiacus J-10-fl]
 gi|222524576|ref|YP_002569047.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Chloroflexus sp.
           Y-400-fl]
 gi|163668051|gb|ABY34417.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Chloroflexus
           aurantiacus J-10-fl]
 gi|222448455|gb|ACM52721.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Chloroflexus sp.
           Y-400-fl]
          Length = 177

 Score = 38.8 bits (89), Expect = 0.32,   Method: Composition-based stats.
 Identities = 27/85 (31%), Positives = 38/85 (44%), Gaps = 18/85 (21%)

Query: 98  VAGTLTN------KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
           V G +T          + L++VY +  +PR VI      +  G        V    +I+P
Sbjct: 88  VTGNVTALRNPLGPARTVLQQVYIEHGDPRGVI-----PHEPGIVPVLLDKVVPVHQIIP 142

Query: 152 VDIYVPGCPPTA-------EALIYG 169
           VD Y+ GCPP+A       EALI G
Sbjct: 143 VDYYLSGCPPSAPRIRALLEALIEG 167


>gi|46202099|ref|ZP_00053778.2| COG1941: Coenzyme F420-reducing hydrogenase, gamma subunit
           [Magnetospirillum magnetotacticum MS-1]
          Length = 183

 Score = 38.8 bits (89), Expect = 0.32,   Method: Composition-based stats.
 Identities = 24/109 (22%), Positives = 43/109 (39%), Gaps = 34/109 (31%)

Query: 89  SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGG-------------- 134
           SP   D+ I+ G + N  A  +  +++     + +I+MG+CA  GG              
Sbjct: 55  SPD-CDLGIIEGGVCN--AENVHVLHEFRKNCKILIAMGACAINGGLPAQRNSLDIRDIL 111

Query: 135 --YYHYSY---------------SVVRGCDRIVPVDIYVPGCPPTAEAL 166
              Y                   + V     +V +D ++PGCPP+ +A+
Sbjct: 112 AAVYAQPGRGVHIPNDPEIPLLLNEVHPLHEVVKIDYFLPGCPPSGDAI 160


>gi|320355403|ref|YP_004196742.1| hydrogenase (NiFe) small subunit HydA [Desulfobulbus propionicus
           DSM 2032]
 gi|320123905|gb|ADW19451.1| hydrogenase (NiFe) small subunit HydA [Desulfobulbus propionicus
           DSM 2032]
          Length = 364

 Score = 38.8 bits (89), Expect = 0.35,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 36/94 (38%), Gaps = 17/94 (18%)

Query: 94  DVMIVAGTLTNKMA---------SALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR 144
            +++V G +  K             L  + +  P    VI++GSCA  GG      +   
Sbjct: 116 FILVVDGAIPVKDKGIYCQIAGKPVLDILNETAPLAAAVIAIGSCAAWGGVPSADPNPTG 175

Query: 145 GCD-------RIVPVDIYVPGCPPTAEALIYGIL 171
                     + +PV + +PGCPP     +  ++
Sbjct: 176 ATPVHTILKPKGIPV-VNIPGCPPNPYNFLSTVI 208


>gi|308751414|gb|ADO44897.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Hydrogenobacter
           thermophilus TK-6]
          Length = 226

 Score = 38.8 bits (89), Expect = 0.35,   Method: Composition-based stats.
 Identities = 29/131 (22%), Positives = 48/131 (36%), Gaps = 23/131 (17%)

Query: 62  LACCAV---EMMQASMPRYDLERFGFAPRASPR------QSDVMIVAGTLTNKMASALRR 112
              C +   E+      RY LE+         +      + D+  V G+++N       R
Sbjct: 11  CDGCQIVFFELEHML--RY-LEKLQVLYFLEAQSENHYGEFDISFVEGSVSN--REDEER 65

Query: 113 VYDQMPEPRYVISMGSCANGGGY-----YHYSYSVVRGCDRIVPVDIYVPGCPPTAEALI 167
           + D       ++++G+CA  GG      +          D  V VD  +PGCP   E ++
Sbjct: 66  ILDIRRRSGMLVAIGACAISGGVQSAGNF-EGIIKSEPIDAFVKVDYQLPGCPINKE-IL 123

Query: 168 YGILL--LQKK 176
              L   L  K
Sbjct: 124 ENFLKSILHGK 134


>gi|225175367|ref|ZP_03729362.1| hydrogenase (NiFe) small subunit HydA [Dethiobacter alkaliphilus
           AHT 1]
 gi|225169119|gb|EEG77918.1| hydrogenase (NiFe) small subunit HydA [Dethiobacter alkaliphilus
           AHT 1]
          Length = 344

 Score = 38.8 bits (89), Expect = 0.36,   Method: Composition-based stats.
 Identities = 25/102 (24%), Positives = 47/102 (46%), Gaps = 25/102 (24%)

Query: 95  VMIVAGTLTNKM--------------ASALRRVYDQMPEPRYVISMGSCANGGGYYHYSY 140
           +++V GT+  K                +AL+ V +   + R+VI++G+CA+ GG +  S 
Sbjct: 80  ILVVEGTVPVKSNGLYSVVGWRNGEPLTALQAVQELGAKARHVIAVGTCASFGGPFAASP 139

Query: 141 SVVRGCDRIVPVD-------IYVPGCPPTAEALIYGILLLQK 175
           +        +PV        I VPGCP   + ++  ++ L +
Sbjct: 140 NPTGS----LPVQSVLDNRVINVPGCPVNPDWMMGTLVHLIR 177


>gi|147919665|ref|YP_686591.1| coenzyme F420-reducing hydrogenase, gamma subunit [uncultured
           methanogenic archaeon RC-I]
 gi|110621987|emb|CAJ37265.1| coenzyme F420-reducing hydrogenase, gamma subunit [uncultured
           methanogenic archaeon RC-I]
          Length = 232

 Score = 38.8 bits (89), Expect = 0.36,   Method: Composition-based stats.
 Identities = 17/91 (18%), Positives = 36/91 (39%), Gaps = 12/91 (13%)

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS---------YSVVR 144
           D++ V G    +   ++  +        ++++ G C++     ++S         +    
Sbjct: 53  DLLFVDGAACLQSKESVESLKKARENTGFLVAWGGCSSTATINNFSRGGQSPQPQHESFP 112

Query: 145 GCDRIVPVDIYVPGCPPTAEA---LIYGILL 172
              R+V VD +VPG PP  E    +I   + 
Sbjct: 113 QISRLVKVDAFVPGSPPGPEMAYNVIRAFVE 143


>gi|332295190|ref|YP_004437113.1| hydrogenase (NiFe) small subunit HydA [Thermodesulfobium narugense
           DSM 14796]
 gi|332178293|gb|AEE13982.1| hydrogenase (NiFe) small subunit HydA [Thermodesulfobium narugense
           DSM 14796]
          Length = 356

 Score = 38.8 bits (89), Expect = 0.39,   Method: Composition-based stats.
 Identities = 29/103 (28%), Positives = 43/103 (41%), Gaps = 11/103 (10%)

Query: 71  QASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKM---ASALRRVYDQMPEPRYVISMG 127
               P Y L   G  P A P    +   AGT+++        +  + +       VI++G
Sbjct: 103 AMKTPGYVLVVEGSIPTADP----LFCTAGTMSDTNPARRPVVETLKEAYKNAAVVIALG 158

Query: 128 SCANGGGYYHYSYSVVRGCDRIV---PVDIYVPGCPPTAEALI 167
           SCA+ GG    + S  RG   IV    V I +P CP   + L+
Sbjct: 159 SCASWGGVVQATPSKGRGVSDIVGKEKV-INLPMCPCNPDHLV 200


>gi|20093707|ref|NP_613554.1| coenzyme F420-reducing hydrogenase, gamma subunit [Methanopyrus
           kandleri AV19]
 gi|19886595|gb|AAM01484.1| Coenzyme F420-reducing hydrogenase, gamma subunit [Methanopyrus
           kandleri AV19]
          Length = 304

 Score = 38.8 bits (89), Expect = 0.41,   Method: Composition-based stats.
 Identities = 9/28 (32%), Positives = 15/28 (53%)

Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGI 170
           VR    ++ VD  +PGCPP  + +   +
Sbjct: 139 VRPLSDVIDVDYELPGCPPEPDLIADAV 166


>gi|13366096|dbj|BAB39386.1| bidirectional hydrogenase small subunit [Anabaena variabilis]
          Length = 181

 Score = 38.4 bits (88), Expect = 0.42,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 47/120 (39%), Gaps = 39/120 (32%)

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY-------------- 135
           P+  DV++V G + N     + ++  +    + ++S G CA  G                
Sbjct: 49  PQGVDVVLVEGAVANNEHLEMIQIVRE--RSQILVSFGDCAVTGNVTALRNPLGGAETVL 106

Query: 136 ---YHYSYSVVRG-----------CDRIVPV------DIYVPGCPPTA---EALIYGILL 172
              Y  +  +               DR++PV      D+Y+PGCPP A   +A++  +L 
Sbjct: 107 QRCYIEAADIHNSIPHEPGIVPTLLDRVIPVHKVVAVDVYLPGCPPNATQIKAVLESLLK 166


>gi|46981403|gb|AAT07677.1| bidirectional hydrogenase small subunit [Lyngbya majuscula CCAP
           1446/4]
          Length = 182

 Score = 38.4 bits (88), Expect = 0.43,   Method: Composition-based stats.
 Identities = 13/33 (39%), Positives = 21/33 (63%)

Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175
           VR    +V VD+++PGCPP+A+ +   I  L +
Sbjct: 135 VRPIHEVVDVDLFLPGCPPSADRIKAAIAPLLE 167


>gi|295696641|ref|YP_003589879.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Bacillus tusciae DSM
           2912]
 gi|295412243|gb|ADG06735.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Bacillus tusciae DSM
           2912]
          Length = 323

 Score = 38.4 bits (88), Expect = 0.44,   Method: Composition-based stats.
 Identities = 21/110 (19%), Positives = 40/110 (36%), Gaps = 31/110 (28%)

Query: 94  DVMIVAGTL-----------TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142
           D+++V GT+           T         ++D   + RYV+++G CA  GG      + 
Sbjct: 67  DILVVEGTVILGPNGTGRYNTMMDRPTKDWIWDLAHKARYVVAVGDCACWGGIVAIHPNP 126

Query: 143 VRGCD-------------------RIVPVDIYVPGCPPTAEALIYGILLL 173
                                     +PV I +PGCP  ++ +   ++ +
Sbjct: 127 TESIGLQYLRKEEGGFLGADFRSKAGLPV-INIPGCPAHSDWITQVLVAI 175


>gi|224368282|ref|YP_002602445.1| HysB [Desulfobacterium autotrophicum HRM2]
 gi|223690998|gb|ACN14281.1| HysB [Desulfobacterium autotrophicum HRM2]
          Length = 337

 Score = 38.4 bits (88), Expect = 0.44,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 29/72 (40%), Gaps = 5/72 (6%)

Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164
           KMA ++  V           + G+     G      +V +  D   PV + +PGCPP  +
Sbjct: 175 KMAGSVLAVGTCAAYGGIPAAKGNLTQATGV----QNVFKKFDITTPV-VNIPGCPPHPD 229

Query: 165 ALIYGILLLQKK 176
            ++  I  L  K
Sbjct: 230 WIVGTIAHLLTK 241


>gi|197124674|ref|YP_002136625.1| methyl-viologen-reducing hydrogenase subunit delta
           [Anaeromyxobacter sp. K]
 gi|196174523|gb|ACG75496.1| methyl-viologen-reducing hydrogenase delta subunit
           [Anaeromyxobacter sp. K]
          Length = 486

 Score = 38.4 bits (88), Expect = 0.46,   Method: Composition-based stats.
 Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 3/30 (10%)

Query: 145 GCDRIVPVDIYVPGCPPTA---EALIYGIL 171
               +VPVD  +PGCPP+    +A +  +L
Sbjct: 311 TLADVVPVDYTIPGCPPSPAVVQAALDALL 340


>gi|288817413|ref|YP_003431760.1| Ni,Fe-hydrogenase small subunit [Hydrogenobacter thermophilus TK-6]
 gi|152061268|dbj|BAF73686.1| Ni,Fe-hydrogenase small subunit [Hydrogenobacter thermophilus]
 gi|288786812|dbj|BAI68559.1| Ni,Fe-hydrogenase small subunit [Hydrogenobacter thermophilus TK-6]
 gi|308751020|gb|ADO44503.1| hydrogenase (NiFe) small subunit HydA [Hydrogenobacter thermophilus
           TK-6]
          Length = 345

 Score = 38.4 bits (88), Expect = 0.50,   Method: Composition-based stats.
 Identities = 28/135 (20%), Positives = 51/135 (37%), Gaps = 29/135 (21%)

Query: 49  WARTGSLMWMTFGLACCAVEMMQASMPR---YDLE--RFGFAPRASPRQSDVMIVAGTLT 103
           + R+ S++     L   ++E  +  M     Y  E  R         +   ++IV G+++
Sbjct: 66  FIRSTSILPSDVLLDYISLEYHETLMSPSGFYAEEAKREAIEKY---KGKYILIVEGSVS 122

Query: 104 NKMASA---------LRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD- 153
            +             +  + +       VI++GSCA+ GG  H   +        VPV  
Sbjct: 123 PRNKGVYCTVSGKSNVELLKEAAQNAGLVIAVGSCASWGGIPHAEPNPTGA----VPVSQ 178

Query: 154 -------IYVPGCPP 161
                  + +PGCPP
Sbjct: 179 ILGDRQVVNIPGCPP 193


>gi|116750954|ref|YP_847641.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Syntrophobacter
           fumaroxidans MPOB]
 gi|116700018|gb|ABK19206.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Syntrophobacter
           fumaroxidans MPOB]
          Length = 324

 Score = 38.4 bits (88), Expect = 0.50,   Method: Composition-based stats.
 Identities = 24/123 (19%), Positives = 42/123 (34%), Gaps = 42/123 (34%)

Query: 86  PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY---------- 135
               P  +D+ IV+G +  +    L        + R ++++G+CA  GG           
Sbjct: 56  FIGIPE-ADIGIVSGGI--RNEEQLEVALKVRAQCRILVALGTCATHGGIPALMNRYSDE 112

Query: 136 --YHYSYSV------VRGCDRIVP--------------VDIYVPGCPPTAE-------AL 166
             +   Y            + +VP              VD+Y+ GCPP  +        L
Sbjct: 113 DLFRRYYRTSETTEAAAPPNEVVPRFLDRTYALDEKARVDVYMAGCPPHPDYLGAMFRTL 172

Query: 167 IYG 169
           + G
Sbjct: 173 LDG 175


>gi|153007144|ref|YP_001381469.1| methyl-viologen-reducing hydrogenase delta subunit
           [Anaeromyxobacter sp. Fw109-5]
 gi|152030717|gb|ABS28485.1| methyl-viologen-reducing hydrogenase delta subunit
           [Anaeromyxobacter sp. Fw109-5]
          Length = 488

 Score = 38.4 bits (88), Expect = 0.51,   Method: Composition-based stats.
 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 3/30 (10%)

Query: 145 GCDRIVPVDIYVPGCPPTA---EALIYGIL 171
               +VPVD  VPGCPP+    +A +  +L
Sbjct: 313 PLADVVPVDYTVPGCPPSPALVQAALDALL 342


>gi|257053666|ref|YP_003131499.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Halorhabdus
           utahensis DSM 12940]
 gi|256692429|gb|ACV12766.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Halorhabdus
           utahensis DSM 12940]
          Length = 266

 Score = 38.4 bits (88), Expect = 0.52,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 29/74 (39%), Gaps = 22/74 (29%)

Query: 122 YVISMGSCANGGG----------------YYHY------SYSVVRGCDRIVPVDIYVPGC 159
            V+++GSCA  GG                 Y        SY + R  + ++ V+  +PGC
Sbjct: 81  VVVALGSCAAFGGINALRNHQDFETVKERVYGEDADSITSYPIARPIEDVIEVEYEIPGC 140

Query: 160 PPTAEALIYGILLL 173
           P   E  +  +  L
Sbjct: 141 PIDREEFLGAVTAL 154


>gi|78357177|ref|YP_388626.1| hydrogenase (NiFe) small subunit (hydA) [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
 gi|78219582|gb|ABB38931.1| hydrogenase (NiFe) small subunit (hydA) [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
          Length = 294

 Score = 38.4 bits (88), Expect = 0.53,   Method: Composition-based stats.
 Identities = 22/113 (19%), Positives = 44/113 (38%), Gaps = 17/113 (15%)

Query: 82  FGFAPRASPRQSDV-MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSY 140
           F     + P  +D    + G + +K  S    + D   +   V+++G+CA  GG      
Sbjct: 84  FVVVEGSIPLAADGKYCIIGDIDHKEISIADAMRDIAAKSAAVLAVGTCAAYGGI----P 139

Query: 141 SVVRGCDRIVPVD------------IYVPGCPPTAEALIYGILLLQKKIRRVG 181
           +        V V             + +PGCPP  + ++  +++    I++ G
Sbjct: 140 AAEGNLTEAVSVQQFFEQEGIKTPVVNIPGCPPHPDWIVGTVVVALDAIKKHG 192


>gi|220919394|ref|YP_002494698.1| methyl-viologen-reducing hydrogenase delta subunit
           [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219957248|gb|ACL67632.1| methyl-viologen-reducing hydrogenase delta subunit
           [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 489

 Score = 38.0 bits (87), Expect = 0.54,   Method: Composition-based stats.
 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 3/30 (10%)

Query: 145 GCDRIVPVDIYVPGCPPTA---EALIYGIL 171
               +VPVD  VPGCPP+    +A +  +L
Sbjct: 311 TLADVVPVDYTVPGCPPSPAVVQAALDALL 340


>gi|320354169|ref|YP_004195508.1| NAD(P)-dependent nickel-iron dehydrogenase subunit HoxY
           [Desulfobulbus propionicus DSM 2032]
 gi|320122671|gb|ADW18217.1| NAD(P)-dependent nickel-iron dehydrogenase subunit HoxY
           [Desulfobulbus propionicus DSM 2032]
          Length = 177

 Score = 38.0 bits (87), Expect = 0.55,   Method: Composition-based stats.
 Identities = 24/112 (21%), Positives = 40/112 (35%), Gaps = 33/112 (29%)

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY------------YH 137
           P   D + + G +++K       V  Q    R++I+MG CA  G                
Sbjct: 49  PEAVDAVCIEGAVSSKEDERKLVVARQ--RSRFLIAMGDCAVTGNVPAMRNVVGAERILR 106

Query: 138 YSYSVVRGCDRIVP-------------------VDIYVPGCPPTAEALIYGI 170
             Y      + ++P                   VD+++PGCPP A+ L   +
Sbjct: 107 SVYIDQDPLNPLIPADNLPVLNSKALPLHCFVQVDLFIPGCPPAADTLFAAL 158


>gi|288817816|ref|YP_003432163.1| NADH ubiquinone oxidoreductase 20 kDa subunit/hydrogenase
           [Hydrogenobacter thermophilus TK-6]
 gi|288787215|dbj|BAI68962.1| NADH ubiquinone oxidoreductase 20 kDa subunit/hydrogenase
           [Hydrogenobacter thermophilus TK-6]
          Length = 203

 Score = 38.0 bits (87), Expect = 0.58,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 37/90 (41%), Gaps = 11/90 (12%)

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY-----YHYSYSVVRGCDR 148
           D+  V G+++N       R+ D       ++++G+CA  GG      +          D 
Sbjct: 26  DISFVEGSVSN--REDEERILDIRRRSGMLVAIGACAISGGVQSAGNF-EGIIKSEPIDA 82

Query: 149 IVPVDIYVPGCPPTAEALIYGILL--LQKK 176
            V VD  +PGCP   E ++   L   L  K
Sbjct: 83  FVKVDYQLPGCPINKE-ILENFLKSILHGK 111


>gi|325958397|ref|YP_004289863.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanobacterium sp.
           AL-21]
 gi|325329829|gb|ADZ08891.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanobacterium sp.
           AL-21]
          Length = 303

 Score = 38.0 bits (87), Expect = 0.59,   Method: Composition-based stats.
 Identities = 23/112 (20%), Positives = 40/112 (35%), Gaps = 36/112 (32%)

Query: 84  FAPRASPRQSDVMIVAGTL-TNKMASALRRVYDQMPEPRYVISMGSCANGGGY------- 135
              +  P   D+ IV+G++   +    L  + +   + + VI+ G+CA  GG        
Sbjct: 42  MDVKEIPENIDIAIVSGSVRNEENKERLEEIRE---KAKIVIAYGTCACYGGITCMADLY 98

Query: 136 ---------YHYSYSV--VRGCDRIVP--------------VDIYVPGCPPT 162
                    +  + S         +VP              +D Y+PGCPP 
Sbjct: 99  SPEDVSNRSFKDNPSTESAPEPSEVVPKLLPIVHPAGDLALIDYYLPGCPPK 150


>gi|268590652|ref|ZP_06124873.1| hydrogenase-2 small chain [Providencia rettgeri DSM 1131]
 gi|291314045|gb|EFE54498.1| hydrogenase-2 small chain [Providencia rettgeri DSM 1131]
          Length = 372

 Score = 38.0 bits (87), Expect = 0.63,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 30/72 (41%), Gaps = 6/72 (8%)

Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGC--DRIVPVD---IYVPGCPP 161
              +  + +       VI++GSCA+ GG      +       D+++  D   I +PGCPP
Sbjct: 135 KPIVEHIREVAEHAAAVIAIGSCASWGGVAAAGDNPTGAVGLDQVIK-DKTVINIPGCPP 193

Query: 162 TAEALIYGILLL 173
                +  +  L
Sbjct: 194 NPHNFLATVAHL 205


>gi|254172034|ref|ZP_04878710.1| cytosolic NiFe-hydrogenase, delta subunit [Thermococcus sp. AM4]
 gi|214033930|gb|EEB74756.1| cytosolic NiFe-hydrogenase, delta subunit [Thermococcus sp. AM4]
          Length = 264

 Score = 38.0 bits (87), Expect = 0.63,   Method: Composition-based stats.
 Identities = 18/99 (18%), Positives = 39/99 (39%), Gaps = 25/99 (25%)

Query: 94  DVMIVAGTL-TNKMASALRRVYDQMPEPRYVISMGSCANGGGY----------------Y 136
           D+  + G++ T +    ++++ +     + V+++GSCA  GG                 Y
Sbjct: 55  DIAFIEGSVSTEEEVELVKKIRE---NAKIVVAVGSCAVQGGVQSWEKDKPLEELWKTVY 111

Query: 137 HYS-----YSVVRGCDRIVPVDIYVPGCPPTAEALIYGI 170
                     +     + + VD  + GCPP  +  +Y +
Sbjct: 112 GDGKVKFQPKMAEPVSKYIKVDYNIYGCPPEKKDFLYAL 150


>gi|315230301|ref|YP_004070737.1| sulfhydrogenase II subunit d [Thermococcus barophilus MP]
 gi|315183329|gb|ADT83514.1| sulfhydrogenase II subunit d [Thermococcus barophilus MP]
          Length = 263

 Score = 38.0 bits (87), Expect = 0.65,   Method: Composition-based stats.
 Identities = 19/98 (19%), Positives = 38/98 (38%), Gaps = 23/98 (23%)

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY----------------YH 137
           D+  + G+++ K    +  V     + + V+++GSCA  GG                 Y 
Sbjct: 55  DIAFIEGSVSTK--EEIELVKKIREKAKIVVAVGSCAVHGGVQSWGKEKELEQLWKTVYG 112

Query: 138 YS-----YSVVRGCDRIVPVDIYVPGCPPTAEALIYGI 170
                    +    ++ + VD  + GCPP  +  +Y +
Sbjct: 113 DGKVKFEPKMAEPVEKFIKVDYKLYGCPPEKKDFLYAL 150


>gi|315229834|ref|YP_004070270.1| sulfhydrogenase II subunit d [Thermococcus barophilus MP]
 gi|315182862|gb|ADT83047.1| sulfhydrogenase II subunit d [Thermococcus barophilus MP]
          Length = 245

 Score = 38.0 bits (87), Expect = 0.66,   Method: Composition-based stats.
 Identities = 30/124 (24%), Positives = 46/124 (37%), Gaps = 25/124 (20%)

Query: 77  YDLERFGFAP-RASPRQSDVMIVAGTLTNK-MASALRRVYDQMPEPRYVISMGSCANGGG 134
           YD++ F  A         DV IV GT++ +     LR          Y+I++G+CA  G 
Sbjct: 33  YDIKEFHMASSFKEHDHLDVAIVTGTVSCQRDLEVLRH---ARNYSNYLIALGTCATHGS 89

Query: 135 Y---------------YHYSYSVVRGCD-----RIVPVDIYVPGCPPTAEALIYGILLLQ 174
                           Y    + ++  D       V VD  +PGCP     +   +L L 
Sbjct: 90  VQGAVEGKLRDKLEKVYGTRANTMKALDPKPVVEYVAVDFALPGCPYDKMEIYQLLLDLA 149

Query: 175 KKIR 178
           K + 
Sbjct: 150 KGVE 153


>gi|159905361|ref|YP_001549023.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanococcus
           maripaludis C6]
 gi|159886854|gb|ABX01791.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanococcus
           maripaludis C6]
          Length = 288

 Score = 38.0 bits (87), Expect = 0.66,   Method: Composition-based stats.
 Identities = 10/35 (28%), Positives = 16/35 (45%)

Query: 141 SVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175
           + V+    +V  D  +PGCPP        I+ L +
Sbjct: 131 TTVKPITEVVKADYVIPGCPPKPALTAGAIVALLE 165


>gi|150402894|ref|YP_001330188.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanococcus
           maripaludis C7]
 gi|150033924|gb|ABR66037.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanococcus
           maripaludis C7]
          Length = 288

 Score = 38.0 bits (87), Expect = 0.69,   Method: Composition-based stats.
 Identities = 10/35 (28%), Positives = 16/35 (45%)

Query: 141 SVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175
           + V+    +V  D  +PGCPP        I+ L +
Sbjct: 131 TTVKPITEVVKADYVIPGCPPKPALTAGAIVALLE 165


>gi|51246063|ref|YP_065947.1| hydrogenase, small chain [Desulfotalea psychrophila LSv54]
 gi|50877100|emb|CAG36940.1| probable hydrogenase, small chain [Desulfotalea psychrophila LSv54]
          Length = 207

 Score = 38.0 bits (87), Expect = 0.70,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 48/120 (40%), Gaps = 34/120 (28%)

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY-------------- 135
           P   DV  V G +++    A  ++  +    + ++++G CA  G                
Sbjct: 79  PEGVDVTFVEGAVSSVDDVAKIQLIRR--RSKVLVALGDCAVTGNVPAMRNEFQVEDILN 136

Query: 136 --YHYSYSV---------------VRGCDRIVPVDIYVPGCPPTAEALIYGI-LLLQKKI 177
             +  + +                V      V VD+++PGCPP+++A+ + I  LLQ +I
Sbjct: 137 RAFIETAACQAQIPMDGVPQLNARVVPIHAHVAVDLFLPGCPPSSDAIFFLISELLQGRI 196


>gi|134046737|ref|YP_001098222.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Methanococcus
           maripaludis C5]
 gi|132664362|gb|ABO36008.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Methanococcus
           maripaludis C5]
          Length = 288

 Score = 37.6 bits (86), Expect = 0.71,   Method: Composition-based stats.
 Identities = 10/35 (28%), Positives = 16/35 (45%)

Query: 141 SVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175
           + V+    +V  D  +PGCPP        I+ L +
Sbjct: 131 TTVKPITEVVKADYVIPGCPPKPALTAGAIVALLE 165


>gi|212223683|ref|YP_002306919.1| cytosolic NiFe-hydrogenase, delta subunit [Thermococcus onnurineus
           NA1]
 gi|212008640|gb|ACJ16022.1| cytosolic NiFe-hydrogenase, delta subunit [Thermococcus onnurineus
           NA1]
          Length = 265

 Score = 37.6 bits (86), Expect = 0.71,   Method: Composition-based stats.
 Identities = 19/99 (19%), Positives = 39/99 (39%), Gaps = 25/99 (25%)

Query: 94  DVMIVAGTL-TNKMASALRRVYDQMPEPRYVISMGSCANGGGY----------------Y 136
           D+  + G++ T +    ++++ +     + V+++G+CA  GG                 Y
Sbjct: 54  DIAFIEGSVSTEEEVELVKKIRE---NAKIVVAVGACATQGGVQSWEKDKSLEELWKAVY 110

Query: 137 HYS-----YSVVRGCDRIVPVDIYVPGCPPTAEALIYGI 170
                     +    +  + VD  + GCPP  +  IY I
Sbjct: 111 GDGKVKFEPKMAEPLENYIKVDYRIYGCPPEKKDFIYAI 149


>gi|307153305|ref|YP_003888689.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Cyanothece sp. PCC
           7822]
 gi|306983533|gb|ADN15414.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Cyanothece sp. PCC
           7822]
          Length = 182

 Score = 37.6 bits (86), Expect = 0.78,   Method: Composition-based stats.
 Identities = 25/107 (23%), Positives = 34/107 (31%), Gaps = 37/107 (34%)

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANG-----------GG---Y 135
           P   DV +V G +       L  +Y      + VIS G CA             GG    
Sbjct: 49  PENVDVCLVEGAI--ANEDNLELIYQVRKNTKLVISFGDCAVTANVPAMRNMLKGGAEPV 106

Query: 136 YHYSY---------------------SVVRGCDRIVPVDIYVPGCPP 161
               Y                       V     ++PVD+++PGCPP
Sbjct: 107 LKRGYLELADDTRQLPDEPGIVPELLDKVTPVHEVIPVDLFMPGCPP 153


>gi|284990228|ref|YP_003408782.1| hypothetical protein Gobs_1697 [Geodermatophilus obscurus DSM
           43160]
 gi|284063473|gb|ADB74411.1| hypothetical protein Gobs_1697 [Geodermatophilus obscurus DSM
           43160]
          Length = 586

 Score = 37.6 bits (86), Expect = 0.80,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 34/52 (65%)

Query: 79  LERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCA 130
           L+R G+   ++P ++D+++V GT    +A A+  V+ Q+PEPR+   +GS A
Sbjct: 36  LDRRGWGHASAPAETDLLLVLGTPGEDLARAIDVVWSQVPEPRHRSGVGSGA 87


>gi|77993215|dbj|BAE46795.1| bidirectional hydrogenase Y subunit [Nostoc sp. PCC 7422]
          Length = 181

 Score = 37.6 bits (86), Expect = 0.80,   Method: Composition-based stats.
 Identities = 12/19 (63%), Positives = 14/19 (73%)

Query: 143 VRGCDRIVPVDIYVPGCPP 161
           V     +VPVDIY+PGCPP
Sbjct: 134 VIPVHTVVPVDIYLPGCPP 152


>gi|254425734|ref|ZP_05039451.1| NADH ubiquinone oxidoreductase, 20 Kd subunit superfamily
           [Synechococcus sp. PCC 7335]
 gi|196188157|gb|EDX83122.1| NADH ubiquinone oxidoreductase, 20 Kd subunit superfamily
           [Synechococcus sp. PCC 7335]
          Length = 191

 Score = 37.6 bits (86), Expect = 0.84,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 17/24 (70%)

Query: 143 VRGCDRIVPVDIYVPGCPPTAEAL 166
           V    ++VPVD Y+PGCPP AE +
Sbjct: 144 VLPVHQVVPVDCYLPGCPPDAERI 167


>gi|41018393|sp|Q00409|VHUG_METVO RecName: Full=F420-non-reducing hydrogenase vhu subunit G
 gi|1747407|emb|CAA43509.1| methylviologen-reducing hydrogenase subunit [Methanococcus voltae
           PS]
          Length = 287

 Score = 37.6 bits (86), Expect = 0.89,   Method: Composition-based stats.
 Identities = 12/35 (34%), Positives = 17/35 (48%)

Query: 141 SVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175
           + V     IV V+  +PGCPP  E     I+ L +
Sbjct: 132 NSVMPVPSIVDVEYVIPGCPPRPEINAGAIVALLE 166


>gi|194334727|ref|YP_002016587.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Prosthecochloris
           aestuarii DSM 271]
 gi|194312545|gb|ACF46940.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Prosthecochloris
           aestuarii DSM 271]
          Length = 254

 Score = 37.2 bits (85), Expect = 0.93,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 40/92 (43%), Gaps = 21/92 (22%)

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGG----------------YYH 137
           D+ +V G+++      ++R+     + + +I+ GSCA  GG                 Y 
Sbjct: 59  DIALVEGSISR--EDEVQRLKAIRNQAKVLIAYGSCACFGGINSLKNSFTTEQCVRDVYG 116

Query: 138 YSYS---VVRGCDRIVPVDIYVPGCPPTAEAL 166
            S+     VR    +V VD  +PGCP + E +
Sbjct: 117 DSHVDTLPVRRISDVVNVDFSIPGCPVSKEEV 148


>gi|225848576|ref|YP_002728739.1| quinone-reactive Ni/Fe-hydrogenase small chain (membrane-bound
           hydrogenase small subunit)
           (hydrogen:quinoneoxidoreductase) [Sulfurihydrogenibium
           azorense Az-Fu1]
 gi|225643249|gb|ACN98299.1| quinone-reactive Ni/Fe-hydrogenase small chain (Membrane-bound
           hydrogenase small subunit)
           (Hydrogen:quinoneoxidoreductase) [Sulfurihydrogenibium
           azorense Az-Fu1]
          Length = 416

 Score = 37.2 bits (85), Expect = 0.94,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 41/92 (44%), Gaps = 16/92 (17%)

Query: 95  VMIVAGTLTNKMASAL----------RRVYDQMPEPRYVISMGSCANGGGY---YHYSYS 141
           ++ V G++  KM  A           +RV     + + VI++G+CA+ GG    Y     
Sbjct: 166 LLFVEGSIPVKMEYAFTTGRHPETGVQRVRRLAKDAKAVIAVGACASFGGVPAAYPNPTG 225

Query: 142 VVRGCDRI--VPVDIYVPGCPPTAEALIYGIL 171
            V   D +  VPV + +P CP     ++  I+
Sbjct: 226 AVGVMDVVSGVPV-VNIPACPANPVNIVGVIM 256


>gi|221209786|ref|ZP_03582767.1| conserved hypothetical protein [Burkholderia multivorans CGD1]
 gi|221170474|gb|EEE02940.1| conserved hypothetical protein [Burkholderia multivorans CGD1]
          Length = 413

 Score = 37.2 bits (85), Expect = 1.00,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 3/56 (5%)

Query: 66  AVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPR 121
            ++      P +DL R GF+   + R SD+    G +T +M  AL   Y+Q  +PR
Sbjct: 91  DLDQSVIGNPAHDLLRLGFSVATAARSSDL---PGIITWRMIEALIAGYEQAFDPR 143


>gi|206890611|ref|YP_002249643.1| F420-non-reducing hydrogenase vhu subunit G [Thermodesulfovibrio
           yellowstonii DSM 11347]
 gi|206742549|gb|ACI21606.1| F420-non-reducing hydrogenase vhu subunit G [Thermodesulfovibrio
           yellowstonii DSM 11347]
          Length = 248

 Score = 37.2 bits (85), Expect = 1.00,   Method: Composition-based stats.
 Identities = 24/104 (23%), Positives = 47/104 (45%), Gaps = 28/104 (26%)

Query: 94  DVMIVAGTLTNKMA-SALRRVYDQMPEPRYVISMGSCANGGGY----------------Y 136
           DV  + G++T++ A   ++++ +     + ++++GSCA  GG                 Y
Sbjct: 53  DVAFIEGSITDEHAVERVKKIRE---RSKILVALGSCATIGGVNGMKNSFPLEEVGKYVY 109

Query: 137 HYSYSV-----VRGCDRIVPVDIYVPGCPP-TAE--ALIYGILL 172
             SY        +   ++VPVD ++ GCP    E  +++  IL 
Sbjct: 110 GESYKFFPTLQTKAVHQVVPVDYFINGCPIYQPEFISVLKCILQ 153


>gi|282899672|ref|ZP_06307636.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Cylindrospermopsis
           raciborskii CS-505]
 gi|281195551|gb|EFA70484.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Cylindrospermopsis
           raciborskii CS-505]
          Length = 163

 Score = 37.2 bits (85), Expect = 1.0,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 44/120 (36%), Gaps = 36/120 (30%)

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH------------ 137
           P   DV++V G +       L  ++      + +IS G CA  G                
Sbjct: 31  PEGVDVVLVEGAI--ANEEHLEIIHKIRQRTKTIISFGDCAVTGNVTAMRNLTGTANVSL 88

Query: 138 ---------------YSYSVVRGC-DRIVPV------DIYVPGCPPTAEALIYGILLLQK 175
                          +S  +V    DR+VPV      DIY+PGCPP+A  +   +  L +
Sbjct: 89  QLAYIEGADVNQKIPHSPGIVPPLIDRVVPVHNIVDVDIYLPGCPPSATRIKAALEPLLR 148


>gi|121533907|ref|ZP_01665733.1| hydrogenase (NiFe) small subunit HydA [Thermosinus carboxydivorans
           Nor1]
 gi|121307418|gb|EAX48334.1| hydrogenase (NiFe) small subunit HydA [Thermosinus carboxydivorans
           Nor1]
          Length = 413

 Score = 37.2 bits (85), Expect = 1.0,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 13/68 (19%)

Query: 118 PEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD----IYVPGCPPTAE--------A 165
           P+ +Y+I++G CA  GG    +Y    G   +  V     I +PGCP   +         
Sbjct: 143 PKAKYIIAVGDCACYGGP-SAAYPNPGGAKGVGKVVSQTVINIPGCPAHPDWITGTLTHL 201

Query: 166 LIYGILLL 173
           L+YG+  L
Sbjct: 202 LLYGMPQL 209


>gi|14717801|gb|AAB02350.2| mvhG [Methanothermobacter thermautotrophicus]
          Length = 308

 Score = 37.2 bits (85), Expect = 1.0,   Method: Composition-based stats.
 Identities = 10/31 (32%), Positives = 17/31 (54%)

Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLL 173
           V+    ++ VD  VPGCPP ++     ++ L
Sbjct: 137 VKPLGEVIDVDFEVPGCPPRSDVAAEAVMAL 167


>gi|242398275|ref|YP_002993699.1| NiFe hydrogenase I, subunit delta [Thermococcus sibiricus MM 739]
 gi|242264668|gb|ACS89350.1| NiFe hydrogenase I, subunit delta [Thermococcus sibiricus MM 739]
          Length = 267

 Score = 37.2 bits (85), Expect = 1.0,   Method: Composition-based stats.
 Identities = 21/101 (20%), Positives = 43/101 (42%), Gaps = 23/101 (22%)

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY--------YH------YS 139
           D+  + G+++ +    +  V     + + VI++GSCA  GG         ++      Y 
Sbjct: 60  DIAFIEGSVSTQ--EEVELVKKIREKAKIVIAVGSCAVHGGVQSWDKDKEFNELWKTVYG 117

Query: 140 YSVVR-------GCDRIVPVDIYVPGCPPTAEALIYGILLL 173
            + V+         ++ + VD  + GCPP  +  +Y +  L
Sbjct: 118 DAHVKFEPKMAEPVEKYIKVDYKLYGCPPEKKDFLYALGTL 158


>gi|161520546|ref|YP_001583973.1| hypothetical protein Bmul_3998 [Burkholderia multivorans ATCC
           17616]
 gi|189353265|ref|YP_001948892.1| hypothetical protein BMULJ_04505 [Burkholderia multivorans ATCC
           17616]
 gi|160344596|gb|ABX17681.1| conserved hypothetical protein [Burkholderia multivorans ATCC
           17616]
 gi|189337287|dbj|BAG46356.1| conserved hypothetical protein [Burkholderia multivorans ATCC
           17616]
          Length = 413

 Score = 37.2 bits (85), Expect = 1.0,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 3/56 (5%)

Query: 66  AVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPR 121
            ++      P +DL R GF+   + R SD+    G +T +M  AL   Y+Q  +PR
Sbjct: 91  DLDQSVIGNPAHDLLRLGFSVATAARSSDL---PGIITWRMIEALIAGYEQAFDPR 143


>gi|221196092|ref|ZP_03569139.1| conserved hypothetical protein [Burkholderia multivorans CGD2M]
 gi|221202765|ref|ZP_03575784.1| conserved hypothetical protein [Burkholderia multivorans CGD2]
 gi|221176699|gb|EEE09127.1| conserved hypothetical protein [Burkholderia multivorans CGD2]
 gi|221182646|gb|EEE15046.1| conserved hypothetical protein [Burkholderia multivorans CGD2M]
          Length = 413

 Score = 37.2 bits (85), Expect = 1.1,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 3/56 (5%)

Query: 66  AVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPR 121
            ++      P +DL R GF+   + R SD+    G +T +M  AL   Y+Q  +PR
Sbjct: 91  DLDQSVIGNPAHDLLRLGFSVATAARSSDL---PGIITWRMIEALIAGYEQAFDPR 143


>gi|15679146|ref|NP_276263.1| methyl viologen-reducing hydrogenase, gamma subunit
           [Methanothermobacter thermautotrophicus str. Delta H]
 gi|41017479|sp|Q50782|MVHG_METTH RecName: Full=F420-non-reducing hydrogenase subunit G; AltName:
           Full=Methyl viologen-reducing hydrogenase subunit gamma;
           Short=MVH subunit G
 gi|2622239|gb|AAB85624.1| methyl viologen-reducing hydrogenase, gamma subunit
           [Methanothermobacter thermautotrophicus str. Delta H]
          Length = 308

 Score = 37.2 bits (85), Expect = 1.1,   Method: Composition-based stats.
 Identities = 10/31 (32%), Positives = 17/31 (54%)

Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLL 173
           V+    ++ VD  VPGCPP ++     ++ L
Sbjct: 137 VKPLGEVIDVDFEVPGCPPRSDVAAEAVMAL 167


>gi|45359258|ref|NP_988815.1| F420-non-reducing hydrogenase subunit [Methanococcus maripaludis
           S2]
 gi|45048133|emb|CAF31251.1| F420-non-reducing hydrogenase subunit [Methanococcus maripaludis
           S2]
          Length = 288

 Score = 37.2 bits (85), Expect = 1.1,   Method: Composition-based stats.
 Identities = 11/33 (33%), Positives = 15/33 (45%)

Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175
           VR    +V  D  +PGCPP        I+ L +
Sbjct: 133 VRAISDVVKADYVIPGCPPKPALTAGAIVALLE 165


>gi|224369333|ref|YP_002603497.1| HynB [Desulfobacterium autotrophicum HRM2]
 gi|223692050|gb|ACN15333.1| HynB [Desulfobacterium autotrophicum HRM2]
          Length = 330

 Score = 37.2 bits (85), Expect = 1.2,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 7/67 (10%)

Query: 115 DQMPEPRYVISMGSCANGGG-----YYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYG 169
           D +P+    I++G+CA  GG          Y  V+    +    I + GCPP    L+  
Sbjct: 165 DVIPKAAVTIALGTCAAYGGIPSAAPNPGGYKGVKDAIGV--ATINISGCPPNPLNLLST 222

Query: 170 ILLLQKK 176
           I+    K
Sbjct: 223 IVKYLNK 229


>gi|85857970|ref|YP_460172.1| nickel-dependent hydrogenase, small chain [Syntrophus
           aciditrophicus SB]
 gi|85721061|gb|ABC76004.1| nickel-dependent hydrogenase, small chain [Syntrophus
           aciditrophicus SB]
          Length = 253

 Score = 37.2 bits (85), Expect = 1.2,   Method: Composition-based stats.
 Identities = 26/96 (27%), Positives = 41/96 (42%), Gaps = 26/96 (27%)

Query: 94  DVMIVAGTLTNKMAS-ALRRVYDQMPEPRYVISMGSCANGGGY----------------Y 136
           DV IV G++T++ A   +R++ D       +I+ GSCA  GG                 Y
Sbjct: 57  DVAIVEGSITDEHAEQRIRKIRD---RSAVLIAYGSCATIGGVNGMKNSFVLDEIRQSVY 113

Query: 137 HYSYSV-----VRGCDRIVPVDIYVPGCPP-TAEAL 166
              Y +      R   ++V VD ++ GCP    E +
Sbjct: 114 GKDYQLFDSKKTRPIHQVVKVDYFINGCPVYHPEVI 149


>gi|171058144|ref|YP_001790493.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Leptothrix cholodnii
           SP-6]
 gi|170775589|gb|ACB33728.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Leptothrix cholodnii
           SP-6]
          Length = 191

 Score = 36.8 bits (84), Expect = 1.3,   Method: Composition-based stats.
 Identities = 32/155 (20%), Positives = 51/155 (32%), Gaps = 53/155 (34%)

Query: 59  TFGLACCAVEMMQASMPRYDL-ERF-----GFAPRASP-------RQSDVMIVAGTLTNK 105
           T  LA C        M   D+ ER            SP          D+ ++ G L N 
Sbjct: 20  TVSLAGC----FGCHMSFLDIDERLLELIEHIEFDRSPLTDIKQIGHCDLGLIEGGLCNS 75

Query: 106 MASALRRVYDQMPEPRYVISMGSCANGGG------------YYHYSY------------- 140
               + + +    +   ++++G+CA  GG              H  Y             
Sbjct: 76  ENVVVLKEFRAHCKT--LVAVGACAINGGLPAQRNHLDLAQMLHDVYQSRPGMTVGSVIP 133

Query: 141 ---------SVVRGCDRIVPVDIYVPGCPPTAEAL 166
                    + V     +V VD ++PGCPP+A+A 
Sbjct: 134 NDPELPLPLNKVHPIHEVVHVDYFLPGCPPSADAF 168


>gi|257791028|ref|YP_003181634.1| hydrogenase (NiFe) small subunit HydA [Eggerthella lenta DSM 2243]
 gi|317488257|ref|ZP_07946824.1| hydrogenase small subunit [Eggerthella sp. 1_3_56FAA]
 gi|325830791|ref|ZP_08164175.1| putative hydrogenase-2 small chain [Eggerthella sp. HGA1]
 gi|257474925|gb|ACV55245.1| hydrogenase (NiFe) small subunit HydA [Eggerthella lenta DSM 2243]
 gi|316912639|gb|EFV34181.1| hydrogenase small subunit [Eggerthella sp. 1_3_56FAA]
 gi|325487198|gb|EGC89641.1| putative hydrogenase-2 small chain [Eggerthella sp. HGA1]
          Length = 410

 Score = 36.8 bits (84), Expect = 1.3,   Method: Composition-based stats.
 Identities = 18/81 (22%), Positives = 32/81 (39%), Gaps = 13/81 (16%)

Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI---------VPVDIYVP 157
                 + +   +   V+++GSCA  GG+     +                  PV + VP
Sbjct: 146 KPGTEHLIEAAEKANAVVALGSCAVNGGWMGAHPNQAGALGVQAFLKKAGINTPV-VNVP 204

Query: 158 GCPPTAE---ALIYGILLLQK 175
           GCP   E   A++  ++ L+K
Sbjct: 205 GCPANPEWLVAVLADVIFLEK 225


>gi|332296153|ref|YP_004438076.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Thermodesulfobium
           narugense DSM 14796]
 gi|332179256|gb|AEE14945.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Thermodesulfobium
           narugense DSM 14796]
          Length = 322

 Score = 36.8 bits (84), Expect = 1.3,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 19/36 (52%)

Query: 140 YSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175
           Y  VR    ++ VD ++ GCPP    ++  ++ + K
Sbjct: 151 YPYVRPIQSVIDVDYFIGGCPPHHSVVLNALVAILK 186


>gi|320352158|ref|YP_004193497.1| F420-non-reducing hydrogenase subunit G [Desulfobulbus propionicus
           DSM 2032]
 gi|320120660|gb|ADW16206.1| F420-non-reducing hydrogenase subunit G [Desulfobulbus propionicus
           DSM 2032]
          Length = 330

 Score = 36.8 bits (84), Expect = 1.3,   Method: Composition-based stats.
 Identities = 10/22 (45%), Positives = 12/22 (54%)

Query: 142 VVRGCDRIVPVDIYVPGCPPTA 163
                D++V VD YV GCPP  
Sbjct: 152 TCSTIDQVVAVDYYVGGCPPHP 173


>gi|116749652|ref|YP_846339.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Syntrophobacter
           fumaroxidans MPOB]
 gi|116698716|gb|ABK17904.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Syntrophobacter
           fumaroxidans MPOB]
          Length = 300

 Score = 36.8 bits (84), Expect = 1.4,   Method: Composition-based stats.
 Identities = 27/115 (23%), Positives = 44/115 (38%), Gaps = 32/115 (27%)

Query: 87  RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY----------- 135
             S  ++DV IV+G +  +   A+ +   +  +   +I+ GSCA  GG            
Sbjct: 57  VVSIPRADVGIVSGGIRTEHGLAVAKAVRESCD--ILIANGSCACMGGIPSLANLVPPDV 114

Query: 136 ----------------YHYSY--SVVRGCDRIVPVDIYVPGCPPTAEALIYGILL 172
                           +      + V   + +VPVDI++PGCPP    L    L 
Sbjct: 115 LKQGVPNLEHGVEDGDFELPPLTARVAAINEVVPVDIFLPGCPP-PTHLFAAALQ 168


>gi|312113759|ref|YP_004011355.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Rhodomicrobium
           vannielii ATCC 17100]
 gi|311218888|gb|ADP70256.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Rhodomicrobium
           vannielii ATCC 17100]
          Length = 358

 Score = 36.8 bits (84), Expect = 1.4,   Method: Composition-based stats.
 Identities = 32/181 (17%), Positives = 55/181 (30%), Gaps = 60/181 (33%)

Query: 50  ARTGSLMWMTFGLACCAVEMMQASMP----RYDLERFGFAPRASPRQS------------ 93
           AR   L   + G   C++ ++ A  P      DL R       S  ++            
Sbjct: 22  ARLSLLWLQSGGCGGCSMSLLNADSPDLFAALDLGRIDVLAHPSLSEASGEDYHALIARI 81

Query: 94  -------DVMIVAGTL---------------TNKMASALRRVYDQMPEPRYVISMGSCAN 131
                  D++ V G +               T K    ++ V +      +VI++GSC  
Sbjct: 82  LSGQQPLDILCVEGAILRGPNGTGRFHLQPGTGK--PVMQLVAELAACAGHVIAIGSCTA 139

Query: 132 GGGYYHYSYSVVRGC-------------------DRIVPVDIYVPGCPPTAEALIYGILL 172
            GG      +V   C                      +P  I + GCP     ++  ++ 
Sbjct: 140 YGGVSAAGDNVTEACGLAFEGAEPGGLLGPGFRSHSGLPA-INIAGCPTHPGWIVETLVQ 198

Query: 173 L 173
           L
Sbjct: 199 L 199


>gi|239627428|ref|ZP_04670459.1| 3-oxoacyl-[acyl-carrier-protein] reductase [Clostridiales bacterium
           1_7_47_FAA]
 gi|239517574|gb|EEQ57440.1| 3-oxoacyl-[acyl-carrier-protein] reductase [Clostridiales bacterium
           1_7_47FAA]
          Length = 252

 Score = 36.8 bits (84), Expect = 1.4,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 21/52 (40%)

Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
             +T+ MA A R + +    P   I++ +    G  Y   Y      D I+P
Sbjct: 39  VMVTHNMADAGRLIAEVEDNPGTCIALSNEDGDGAVYGEVYRRFGSVDVIIP 90


>gi|318041121|ref|ZP_07973077.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Synechococcus sp.
           CB0101]
          Length = 190

 Score = 36.8 bits (84), Expect = 1.4,   Method: Composition-based stats.
 Identities = 12/33 (36%), Positives = 20/33 (60%)

Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175
           V     +VPV++Y+PGCPP A+ +   +  L +
Sbjct: 143 VLPVHELVPVEVYLPGCPPPADRIRAALEPLLR 175


>gi|320160664|ref|YP_004173888.1| bidirectional hydrogenase Y subunit [Anaerolinea thermophila UNI-1]
 gi|319994517|dbj|BAJ63288.1| bidirectional hydrogenase Y subunit [Anaerolinea thermophila UNI-1]
          Length = 177

 Score = 36.8 bits (84), Expect = 1.5,   Method: Composition-based stats.
 Identities = 10/31 (32%), Positives = 17/31 (54%)

Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175
                V VD+++PGCPP A+ +   +  L +
Sbjct: 133 PLHHYVHVDVFLPGCPPAADTIYQVLSELIE 163


>gi|253699753|ref|YP_003020942.1| hydrogenase (NiFe) small subunit HydA [Geobacter sp. M21]
 gi|251774603|gb|ACT17184.1| hydrogenase (NiFe) small subunit HydA [Geobacter sp. M21]
          Length = 368

 Score = 36.8 bits (84), Expect = 1.5,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 39/91 (42%), Gaps = 15/91 (16%)

Query: 95  VMIVAGTL-TNKMASALR--------RVYDQMPEPRYVISMGSCANGGGYYHYSYSV--- 142
           +++V G + T +     +         + +       +IS+G+CA+ GG    S +    
Sbjct: 111 ILVVEGAIPTKQNGIFCKVSGKTAMESLQEAAKGAAAIISIGTCASYGGIQSVSPNPTGA 170

Query: 143 --VRGCDRIVPVDIYVPGCPPTAEALIYGIL 171
             VR   +  P+ I +PGCPP     +  +L
Sbjct: 171 VGVRDIVKDKPI-INIPGCPPNPYNFLSTVL 200


>gi|2746739|gb|AAB94935.1| NiFe hydrogenase delta subunit [Thermococcus litoralis DSM 5473]
          Length = 263

 Score = 36.4 bits (83), Expect = 1.6,   Method: Composition-based stats.
 Identities = 16/98 (16%), Positives = 38/98 (38%), Gaps = 23/98 (23%)

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY------------------ 135
           D+  + G+++ +    +  V     + + V+++G+CA  GG                   
Sbjct: 55  DIAFIEGSVSTQ--EEVELVKKIREKAKIVVAVGACATQGGVQSWGKDKELSELWKTVYG 112

Query: 136 ---YHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGI 170
                +   +    ++ + VD  + GCPP  +  +Y +
Sbjct: 113 DAHVKFEPKMAEPVEKYIKVDYKLYGCPPEKKDFLYAL 150


>gi|18977265|ref|NP_578622.1| sulfhydrogenase delta subunit [Pyrococcus furiosus DSM 3638]
 gi|562776|emb|CAA53036.1| hydrogenase (delta subunit) [Pyrococcus furiosus DSM 3638]
 gi|18892934|gb|AAL81017.1| sulfhydrogenase delta subunit [Pyrococcus furiosus DSM 3638]
          Length = 261

 Score = 36.4 bits (83), Expect = 1.6,   Method: Composition-based stats.
 Identities = 17/98 (17%), Positives = 40/98 (40%), Gaps = 24/98 (24%)

Query: 94  DVMIVAGTL-TNKMASALRRVYDQMPEPRYVISMGSCANGGGY-----------YHYSYS 141
           D+  + G++ T +    ++++ +     + V+++G+CA  GG            +   Y 
Sbjct: 53  DIAFIEGSVSTEEEVELVKKIRE---NAKIVVAVGACAVQGGVQSWSEKPLEELWKKVYG 109

Query: 142 VVR---------GCDRIVPVDIYVPGCPPTAEALIYGI 170
             +            + + VD  + GCPP  +  +Y +
Sbjct: 110 DAKVKFQPKKAEPVSKYIKVDYNIYGCPPEKKDFLYAL 147


>gi|15606279|ref|NP_213658.1| hydrogenase small subunit [Aquifex aeolicus VF5]
 gi|2983467|gb|AAC07047.1| hydrogenase small subunit [Aquifex aeolicus VF5]
          Length = 349

 Score = 36.4 bits (83), Expect = 1.6,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 6/48 (12%)

Query: 119 EPRYVISMGSCANGGGYYHYSYSVVRGCDRIV-----PVDIYVPGCPP 161
              +VI++GSCA+ GG    S +              PV + VPGCPP
Sbjct: 147 HAAFVIAVGSCASWGGIPKASPNPTGAVPVYEIVKDKPV-VNVPGCPP 193


>gi|78044264|ref|YP_360378.1| [Ni/Fe] hydrogenase small subunit [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|77996379|gb|ABB15278.1| [Ni/Fe] hydrogenase, small subunit [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 354

 Score = 36.4 bits (83), Expect = 1.7,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 4/46 (8%)

Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVD----IYVPGCPPTAE 164
           VI++G+CA  GG      +          +D    + +PGCPP  +
Sbjct: 148 VIAIGTCAAFGGIPAADPNPTGCVPVTEVIDPKKVLNIPGCPPHPD 193


>gi|332159306|ref|YP_004424585.1| cytochrome-c3 hydrogenase delta chain [Pyrococcus sp. NA2]
 gi|331034769|gb|AEC52581.1| cytochrome-c3 hydrogenase delta chain [Pyrococcus sp. NA2]
          Length = 263

 Score = 36.4 bits (83), Expect = 1.7,   Method: Composition-based stats.
 Identities = 18/98 (18%), Positives = 39/98 (39%), Gaps = 24/98 (24%)

Query: 94  DVMIVAGTL-TNKMASALRRVYDQMPEPRYVISMGSCANGGGY-----------YHYSYS 141
           D+  + G++ T +    ++R+ +     + V+++G+CA  GG            +   Y 
Sbjct: 55  DIAFIEGSVSTEEEVELVKRIRE---NAKIVVAVGACAVQGGVQSWSDRSLEELWKKVYG 111

Query: 142 VVR---------GCDRIVPVDIYVPGCPPTAEALIYGI 170
             +            + + VD  + GCPP     +Y +
Sbjct: 112 DAKVKFQPKKAEPVSKYIKVDYNIYGCPPEKRDFLYAL 149


>gi|119944967|ref|YP_942647.1| hydrogen dehydrogenase [Psychromonas ingrahamii 37]
 gi|119863571|gb|ABM03048.1| Hydrogen dehydrogenase [Psychromonas ingrahamii 37]
          Length = 433

 Score = 36.4 bits (83), Expect = 1.7,   Method: Composition-based stats.
 Identities = 23/108 (21%), Positives = 40/108 (37%), Gaps = 37/108 (34%)

Query: 93  SDVMIVAGTLTN-KMASALRRVYDQMPEPRYVISMGSCANGGGY---------------- 135
            D+ ++ G + N +  + LR   +     + +I++GSCA  GG                 
Sbjct: 306 CDLGLIEGAVCNTENIAVLRHFRESC---KIIIAVGSCAINGGVPSLRNNIDVKDCLDEA 362

Query: 136 YHYSYSVVRG-----------------CDRIVPVDIYVPGCPPTAEAL 166
           Y     +V                      ++ VD ++PGCPP A+A 
Sbjct: 363 YLNGIGLVNPKVPIDKELPYLLEKVYPIHEVIKVDYFLPGCPPPADAF 410


>gi|119489271|ref|ZP_01622078.1| hydrogenase small subunit [Lyngbya sp. PCC 8106]
 gi|119454745|gb|EAW35890.1| hydrogenase small subunit [Lyngbya sp. PCC 8106]
          Length = 182

 Score = 36.4 bits (83), Expect = 1.7,   Method: Composition-based stats.
 Identities = 12/31 (38%), Positives = 19/31 (61%)

Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLL 173
           V     +V VD+++PGCPP+A+ +   I  L
Sbjct: 135 VCPIHEVVDVDLFLPGCPPSADRIKAAIAPL 165


>gi|298241647|ref|ZP_06965454.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Ktedonobacter
           racemifer DSM 44963]
 gi|297554701|gb|EFH88565.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Ktedonobacter
           racemifer DSM 44963]
          Length = 342

 Score = 36.4 bits (83), Expect = 1.8,   Method: Composition-based stats.
 Identities = 17/86 (19%), Positives = 32/86 (37%), Gaps = 13/86 (15%)

Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCD------------ 147
             +TN+       +    P+   V++ G+CA  GG +    +                  
Sbjct: 105 DPVTNQPIPTATWIDRLAPKAWAVVAAGTCATYGGIHAMQGNPTGAMGLADYLGKNWRSW 164

Query: 148 RIVPVDIYVPGCPPTAEALIYGILLL 173
             +P+ + VPGCP   +  +  +L L
Sbjct: 165 AGIPI-VNVPGCPVQPDNFMETLLYL 189


>gi|218441072|ref|YP_002379401.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Cyanothece sp. PCC
           7424]
 gi|218173800|gb|ACK72533.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Cyanothece sp. PCC
           7424]
          Length = 182

 Score = 36.4 bits (83), Expect = 1.9,   Method: Composition-based stats.
 Identities = 9/19 (47%), Positives = 14/19 (73%)

Query: 143 VRGCDRIVPVDIYVPGCPP 161
           V     ++PVD+++PGCPP
Sbjct: 135 VSPVHEVIPVDLFMPGCPP 153


>gi|298492583|ref|YP_003722760.1| NADH ubiquinone oxidoreductase 20 kDa subunit ['Nostoc azollae'
           0708]
 gi|298234501|gb|ADI65637.1| NADH ubiquinone oxidoreductase 20 kDa subunit ['Nostoc azollae'
           0708]
          Length = 167

 Score = 36.4 bits (83), Expect = 1.9,   Method: Composition-based stats.
 Identities = 33/157 (21%), Positives = 51/157 (32%), Gaps = 43/157 (27%)

Query: 60  FGLACCAVEMMQASMPRYDLE-RFGFAPRAS------PRQSDVMIVAGTLTNKMASALRR 112
            G + C +  +       DL  +F             P   D+++V G   N+    L  
Sbjct: 12  GGCSGCHMSFLDLDKCLIDLAAKFDLVYSPISDIKAYPEGVDIVLVEGASANEEHLELIH 71

Query: 113 VYDQMPEPRYVISMGSCANGG----------------------------------GYYHY 138
           +  Q  +   +I+ G CA  G                                  G +  
Sbjct: 72  IIRQGTKT--IIAFGDCAVTGNVTAIRNPFFSANISLRLAYIEGADVNQQIPHAPGIFPP 129

Query: 139 SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175
               V     IVPVDI +PGCPP+A ++   +  L K
Sbjct: 130 LLDKVVPVHYIVPVDICLPGCPPSALSICAALEPLIK 166


>gi|78777635|ref|YP_393950.1| Ni-Fe hydrogenase, small subunit [Sulfurimonas denitrificans DSM
           1251]
 gi|78498175|gb|ABB44715.1| Ni-Fe hydrogenase, small subunit [Sulfurimonas denitrificans DSM
           1251]
          Length = 293

 Score = 36.4 bits (83), Expect = 1.9,   Method: Composition-based stats.
 Identities = 16/103 (15%), Positives = 40/103 (38%), Gaps = 16/103 (15%)

Query: 91  RQSDVMIVAGTLTNKM----ASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYS----- 141
            + +V+I+ G ++ +           + +     + ++++G+CA  GG +  S       
Sbjct: 57  IECEVLIIEGAISEEFQRGGVPIFEIIKNYSKRVQKILTVGTCATFGGIFRESDYKDTAG 116

Query: 142 -------VVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
                   +      +   I + GCP   E L+  +  ++K +
Sbjct: 117 MHFDQDRALHNFSDFLDKTISISGCPIHPEVLVNTLYAIKKSV 159


>gi|332704235|ref|ZP_08424323.1| hydrogenase (NiFe) small subunit HydA [Desulfovibrio africanus str.
           Walvis Bay]
 gi|332554384|gb|EGJ51428.1| hydrogenase (NiFe) small subunit HydA [Desulfovibrio africanus str.
           Walvis Bay]
          Length = 307

 Score = 36.4 bits (83), Expect = 1.9,   Method: Composition-based stats.
 Identities = 16/78 (20%), Positives = 31/78 (39%), Gaps = 8/78 (10%)

Query: 98  VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCD--------RI 149
           + G + +K  S  + + +   +    I++GSC   GG      ++              I
Sbjct: 122 IIGDVHHKEISINQAMLELGKDAAACIALGSCGAYGGIPAAKGNLTGCVGLRDFYQSKNI 181

Query: 150 VPVDIYVPGCPPTAEALI 167
               + +PGCPP  + +I
Sbjct: 182 STPVVNIPGCPPHPDWII 199


>gi|193214064|ref|YP_001995263.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Chloroherpeton
           thalassium ATCC 35110]
 gi|193087541|gb|ACF12816.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Chloroherpeton
           thalassium ATCC 35110]
          Length = 254

 Score = 36.4 bits (83), Expect = 1.9,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 36/86 (41%), Gaps = 21/86 (24%)

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY----------------YH 137
           DV ++ G+++   A  + R+       + ++++GSCA  GG                 Y 
Sbjct: 59  DVALIEGSISR--ADEVERLKKIRENAKILVALGSCACFGGVNSLKNRFPIEEVVTEVYG 116

Query: 138 YSY---SVVRGCDRIVPVDIYVPGCP 160
                   VR    +V VD+ +PGCP
Sbjct: 117 DMPKETEPVRRVSDVVKVDLCIPGCP 142


>gi|256828574|ref|YP_003157302.1| hydrogenase (NiFe) small subunit HydA [Desulfomicrobium baculatum
           DSM 4028]
 gi|256577750|gb|ACU88886.1| hydrogenase (NiFe) small subunit HydA [Desulfomicrobium baculatum
           DSM 4028]
          Length = 319

 Score = 36.4 bits (83), Expect = 2.0,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 6/62 (9%)

Query: 118 PEPRYVISMGSCANGGGYYHYSYSV-----VRGCDRIVPVD-IYVPGCPPTAEALIYGIL 171
           P+    I+ G+CA  GG    S +      V    + + V+ + VPGCPP    L+  I+
Sbjct: 153 PKALATIAYGTCATYGGVQAASPNPTEAKGVNDALKHLGVNAVNVPGCPPNPYNLVGTIV 212

Query: 172 LL 173
            L
Sbjct: 213 HL 214


>gi|220909410|ref|YP_002484721.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Cyanothece sp. PCC
           7425]
 gi|219866021|gb|ACL46360.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Cyanothece sp. PCC
           7425]
          Length = 182

 Score = 36.4 bits (83), Expect = 2.0,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 20/33 (60%)

Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175
           V     +VPVDI++PGCPP A+ +   I  L K
Sbjct: 135 VLPIHEVVPVDIFMPGCPPPADRIKATIAPLLK 167


>gi|14521074|ref|NP_126549.1| cytochrome-c3 hydrogenase delta chain [Pyrococcus abyssi GE5]
 gi|5458291|emb|CAB49780.1| hydD-1 cytochrome-c3 hydrogenase delta chain [Pyrococcus abyssi
           GE5]
          Length = 261

 Score = 36.4 bits (83), Expect = 2.0,   Method: Composition-based stats.
 Identities = 17/98 (17%), Positives = 39/98 (39%), Gaps = 24/98 (24%)

Query: 94  DVMIVAGTL-TNKMASALRRVYDQMPEPRYVISMGSCANGGGY-----------YHYSYS 141
           D+  + G++ T +    ++++ +     + V+++G+CA  GG            +   Y 
Sbjct: 53  DIAFIEGSVSTEEEVELVKKIRE---NAKIVVAVGACAVQGGVQSWTDKSLEELWKTVYG 109

Query: 142 VVR---------GCDRIVPVDIYVPGCPPTAEALIYGI 170
             +            + + VD  + GCPP     +Y +
Sbjct: 110 DAKVKFQPKKAEPVSKYIKVDYNIYGCPPEKRDFLYAL 147


>gi|171317578|ref|ZP_02906766.1| conserved hypothetical protein [Burkholderia ambifaria MEX-5]
 gi|171097272|gb|EDT42119.1| conserved hypothetical protein [Burkholderia ambifaria MEX-5]
          Length = 411

 Score = 36.1 bits (82), Expect = 2.1,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 16/74 (21%)

Query: 66  AVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQ--------- 116
            ++      P +D+ R GF+   + R SD+    G +T +M  AL   Y+Q         
Sbjct: 89  DLDQSVIGNPVHDVLRLGFSLATAARSSDL---PGIITWRMIEALVDGYEQAFDSRRRDE 145

Query: 117 ---MPEPRYV-ISM 126
              MP P  V I+M
Sbjct: 146 LSHMPRPTEVKIAM 159


>gi|302878801|ref|YP_003847365.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Gallionella
           capsiferriformans ES-2]
 gi|302581590|gb|ADL55601.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Gallionella
           capsiferriformans ES-2]
          Length = 182

 Score = 36.1 bits (82), Expect = 2.2,   Method: Composition-based stats.
 Identities = 9/26 (34%), Positives = 17/26 (65%)

Query: 141 SVVRGCDRIVPVDIYVPGCPPTAEAL 166
           + V     +V +D ++PGCPP+ +A+
Sbjct: 134 NQVHPIHEVVKIDYFIPGCPPSGDAI 159


>gi|321453027|gb|EFX64308.1| hypothetical protein DAPPUDRAFT_66315 [Daphnia pulex]
          Length = 360

 Score = 36.1 bits (82), Expect = 2.5,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 3/43 (6%)

Query: 122 YVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164
           +V    +  +GGG Y     +V+     +PVDIY  GC    E
Sbjct: 165 FVSKCHTTHSGGGSYRE--YLVQNLSSFIPVDIY-GGCATKPE 204


>gi|289549181|ref|YP_003474169.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Thermocrinis albus
           DSM 14484]
 gi|289182798|gb|ADC90042.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Thermocrinis albus
           DSM 14484]
          Length = 284

 Score = 36.1 bits (82), Expect = 2.5,   Method: Composition-based stats.
 Identities = 20/98 (20%), Positives = 40/98 (40%), Gaps = 21/98 (21%)

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY--------------YHYS 139
           D++IV G +  +     R + +     R+V+++G+CA  G                +   
Sbjct: 59  DLLIVEGAVMEED----RSLLELANRARWVMAVGNCAVYGNIPAINNSHVSGLSFRFTEK 114

Query: 140 YSVVRGCDRI--VPVDIYVPGCPPTAEALIYGILLLQK 175
              ++       +PV I + GCP   E +   +L+L +
Sbjct: 115 GGPLKDFVSKGGLPV-INISGCPAHPEWICGTMLMLAE 151


>gi|169831803|ref|YP_001717785.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Candidatus
           Desulforudis audaxviator MP104C]
 gi|169638647|gb|ACA60153.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Candidatus
           Desulforudis audaxviator MP104C]
          Length = 317

 Score = 36.1 bits (82), Expect = 2.5,   Method: Composition-based stats.
 Identities = 11/27 (40%), Positives = 17/27 (62%)

Query: 140 YSVVRGCDRIVPVDIYVPGCPPTAEAL 166
           Y  V+    +V VD ++PGCPPT+  +
Sbjct: 147 YKEVKSLSDVVDVDYFMPGCPPTSAQI 173


>gi|296134474|ref|YP_003641721.1| hydrogenase (NiFe) small subunit HydA [Thermincola sp. JR]
 gi|296033052|gb|ADG83820.1| hydrogenase (NiFe) small subunit HydA [Thermincola potens JR]
          Length = 352

 Score = 36.1 bits (82), Expect = 2.5,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 12/63 (19%)

Query: 123 VISMGSCANGGGYYHYSYSVVRG--CDRIVPVD--IYVPGCPPTAE--------ALIYGI 170
           V+++GSCA  GG      + +     D+I   +  I +PGCPP  +         ++YG+
Sbjct: 147 VVALGSCACYGGLLSVKPNPLDNTGLDKIFTQNKVINIPGCPPHPDWVVGTLAHLILYGM 206

Query: 171 LLL 173
             L
Sbjct: 207 PDL 209


>gi|14591103|ref|NP_143178.1| cytochrome-c3 hydrogenase delta chain [Pyrococcus horikoshii OT3]
 gi|3257712|dbj|BAA30395.1| 266aa long hypothetical cytochrome-c3 hydrogenase delta chain
           [Pyrococcus horikoshii OT3]
          Length = 266

 Score = 36.1 bits (82), Expect = 2.6,   Method: Composition-based stats.
 Identities = 17/98 (17%), Positives = 39/98 (39%), Gaps = 24/98 (24%)

Query: 94  DVMIVAGTL-TNKMASALRRVYDQMPEPRYVISMGSCANGGGY-----------YHYSYS 141
           D+  + G++ T +    ++++ +     + V+++G+CA  GG            +   Y 
Sbjct: 58  DIAFIEGSVSTEEEVELVKKIRE---NSKIVVAVGACAVQGGVQSWTDKSLEELWRTVYG 114

Query: 142 VVR---------GCDRIVPVDIYVPGCPPTAEALIYGI 170
             +            + + VD  + GCPP     +Y +
Sbjct: 115 DAKVKFKPKKAEPVSKYIKVDYNIYGCPPEKRDFLYAL 152


>gi|23015033|ref|ZP_00054823.1| COG1740: Ni,Fe-hydrogenase I small subunit [Magnetospirillum
           magnetotacticum MS-1]
          Length = 375

 Score = 35.7 bits (81), Expect = 2.7,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 39/90 (43%), Gaps = 14/90 (15%)

Query: 95  VMIVAGTLTNKM---------ASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR- 144
           V+++ G +  K           +A++   +       VI++GSCA+ GG      +    
Sbjct: 118 VLVIEGAIPVKDNGIYCKVGGKTAMQLTKECAEGAAAVIAIGSCASWGGMPSTPPNPTGA 177

Query: 145 -GCDRIV--PVDIYVPGCPPTAEALIYGIL 171
            G   I+  PV + +PGCPP     +  ++
Sbjct: 178 TGVAEILGKPV-VTIPGCPPNPYNFLSTVV 206


>gi|302549355|ref|ZP_07301697.1| NADH ubiquinone oxidoreductase [Streptomyces viridochromogenes DSM
           40736]
 gi|302466973|gb|EFL30066.1| NADH ubiquinone oxidoreductase [Streptomyces viridochromogenes DSM
           40736]
          Length = 363

 Score = 35.7 bits (81), Expect = 2.7,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 43/119 (36%), Gaps = 21/119 (17%)

Query: 73  SMPRYDLERF-----GFAPRASPRQSDVMIVA---GTLTNKMASALRRVYDQMPEPRYVI 124
           +  R DLE F     G  P  +  + D    +      T +  +    +    P+   V+
Sbjct: 88  AAARGDLEPFILVIEGSIPNQNIIEGDGYWTSFGNDPETGEPQTLNWWIDQLAPKAWAVV 147

Query: 125 SMGSCANGGGYYHYSYSVVRGCD------------RIVPVDIYVPGCPPTAEALIYGIL 171
           + G+CA  GG +  S +                    +PV + VPGCP   E  +  ++
Sbjct: 148 AAGTCATFGGIHAMSGNPTGCMGLADYLGWDYTSQGGLPV-VNVPGCPIQPENFMETLV 205


>gi|297617287|ref|YP_003702446.1| hypothetical protein Slip_1104 [Syntrophothermus lipocalidus DSM
           12680]
 gi|297145124|gb|ADI01881.1| protein of unknown function DUF362 [Syntrophothermus lipocalidus
           DSM 12680]
          Length = 585

 Score = 35.7 bits (81), Expect = 2.8,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 17/30 (56%)

Query: 152 VDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
           V I++PGCPP  E +I G+  +   + +  
Sbjct: 533 VGIHLPGCPPHTEVIIDGVYRMFPDVEKAK 562


>gi|312136952|ref|YP_004004289.1| f420-non-reducing hydrogenase subunit g [Methanothermus fervidus
           DSM 2088]
 gi|311224671|gb|ADP77527.1| F420-non-reducing hydrogenase subunit G [Methanothermus fervidus
           DSM 2088]
          Length = 309

 Score = 35.7 bits (81), Expect = 2.9,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 4/32 (12%)

Query: 143 VRGCDRIVPVDIYVPGCPPT----AEALIYGI 170
           V+    +V VD+ +PGCPP     AE L+  +
Sbjct: 138 VKPISEVVDVDLEIPGCPPKSDFAAEVLMKAL 169


>gi|309779567|ref|ZP_07674328.1| conserved hypothetical protein [Ralstonia sp. 5_7_47FAA]
 gi|308921808|gb|EFP67444.1| conserved hypothetical protein [Ralstonia sp. 5_7_47FAA]
          Length = 400

 Score = 35.7 bits (81), Expect = 2.9,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 3/49 (6%)

Query: 66  AVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVY 114
            ++      P +DL R G +   + R SD+    G +T +M  AL   Y
Sbjct: 88  DLDQTVLGNPAHDLIRLGVSLATAARGSDL---PGIVTARMVEALMAGY 133


>gi|304315263|ref|YP_003850410.1| F420-non-reducing hydrogenase, subunit G [Methanothermobacter
           marburgensis str. Marburg]
 gi|313104137|sp|P60239|MVHG_METTM RecName: Full=F420-non-reducing hydrogenase subunit G; AltName:
           Full=Methyl viologen-reducing hydrogenase subunit gamma;
           Short=MVH subunit G
 gi|302588722|gb|ADL59097.1| F420-non-reducing hydrogenase, subunit G [Methanothermobacter
           marburgensis str. Marburg]
          Length = 308

 Score = 35.7 bits (81), Expect = 2.9,   Method: Composition-based stats.
 Identities = 11/33 (33%), Positives = 18/33 (54%)

Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175
           V+    ++ VD  VPGCPP ++     ++ L K
Sbjct: 137 VKPLGEVIDVDFEVPGCPPRSDVAAEVVMALLK 169


>gi|150399745|ref|YP_001323512.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanococcus
           vannielii SB]
 gi|150012448|gb|ABR54900.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanococcus
           vannielii SB]
          Length = 287

 Score = 35.7 bits (81), Expect = 2.9,   Method: Composition-based stats.
 Identities = 9/32 (28%), Positives = 14/32 (43%)

Query: 142 VVRGCDRIVPVDIYVPGCPPTAEALIYGILLL 173
            V+    ++  D  +PGCPP        I+ L
Sbjct: 132 TVKPVTDVIKADYILPGCPPKPALNAAAIVAL 163


>gi|46310228|gb|AAS87375.1| NiFe-hydrogenase small subunit [Acaryochloris marina]
          Length = 133

 Score = 35.7 bits (81), Expect = 2.9,   Method: Composition-based stats.
 Identities = 24/105 (22%), Positives = 37/105 (35%), Gaps = 36/105 (34%)

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGG-------------GYY 136
           P++ DV +V G +          ++      +Y+I+ G CA  G             G  
Sbjct: 31  PQEVDVALVEGAI--ANTDHWEMIHQVRDCTQYLIAFGDCAVTGNVTALRNLLGTAEGVL 88

Query: 137 HYSYSV---------------------VRGCDRIVPVDIYVPGCP 160
             SY                       V+    +VPVD+Y+PGCP
Sbjct: 89  ERSYINLADLVPQIPAEEAIVPPLLDWVKPVHTVVPVDLYLPGCP 133


>gi|189347574|ref|YP_001944103.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Chlorobium limicola
           DSM 245]
 gi|189341721|gb|ACD91124.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Chlorobium limicola
           DSM 245]
          Length = 252

 Score = 35.7 bits (81), Expect = 3.0,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 36/86 (41%), Gaps = 21/86 (24%)

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY--YHYSYSV--------- 142
           DV  V G+++   +  + R+     + + +++ G+CA  GG       Y +         
Sbjct: 59  DVAFVEGSISR--SDEIERLLAIRRQAKTLVAFGTCACFGGVNSLKNRYPIEKCIAEVYD 116

Query: 143 --------VRGCDRIVPVDIYVPGCP 160
                   VR    IV VD+ +PGCP
Sbjct: 117 GQPVESLPVRKISDIVKVDLSIPGCP 142


>gi|282895628|ref|ZP_06303753.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Raphidiopsis
           brookii D9]
 gi|281199322|gb|EFA74187.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Raphidiopsis
           brookii D9]
          Length = 181

 Score = 35.7 bits (81), Expect = 3.0,   Method: Composition-based stats.
 Identities = 28/111 (25%), Positives = 41/111 (36%), Gaps = 36/111 (32%)

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH------------ 137
           P   DV++V G +       L  ++      + +IS G CA  G                
Sbjct: 49  PEGVDVVLVEGAI--ANEEHLELIHKIRQRTKTIISFGDCAVTGNVTAMRNLTGTANVSL 106

Query: 138 ---------------YSYSVVRGC-DRIVPV------DIYVPGCPPTAEAL 166
                          +S  +V    DR+VPV      DIY+PGCPP+A  +
Sbjct: 107 QLAYIEGADVNQKIPHSPGIVPPLIDRVVPVHNIVDVDIYLPGCPPSATRI 157


>gi|217978885|ref|YP_002363032.1| Hydrogen dehydrogenase [Methylocella silvestris BL2]
 gi|217504261|gb|ACK51670.1| Hydrogen dehydrogenase [Methylocella silvestris BL2]
          Length = 190

 Score = 35.7 bits (81), Expect = 3.1,   Method: Composition-based stats.
 Identities = 10/31 (32%), Positives = 18/31 (58%)

Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLL 173
           V     +V +D ++PGCPP+ +A+   +  L
Sbjct: 144 VYPSHEVVKIDYFLPGCPPSGDAIWAALKAL 174


>gi|1617572|gb|AAB57891.1| NAD-reducing hydrogenase delta subunit [Rhodococcus opacus]
          Length = 209

 Score = 35.7 bits (81), Expect = 3.2,   Method: Composition-based stats.
 Identities = 12/31 (38%), Positives = 19/31 (61%)

Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLL 173
           V  C  +V +D ++PGCPP A+A+   +  L
Sbjct: 163 VYPCHEVVKMDYFIPGCPPDADAIFKVLDDL 193


>gi|126656038|ref|ZP_01727422.1| hydrogenase small subunit [Cyanothece sp. CCY0110]
 gi|126622318|gb|EAZ93024.1| hydrogenase small subunit [Cyanothece sp. CCY0110]
          Length = 181

 Score = 35.7 bits (81), Expect = 3.3,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 41/120 (34%), Gaps = 36/120 (30%)

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGG-------------YY 136
           P   DV +V G + NK    L  + +   + + ++S G CA                   
Sbjct: 49  PDNVDVCLVEGAIANK--ENLELIKEIRAKTKLIVSFGDCAVTANVPAMRNMLGPAETVL 106

Query: 137 HYSY---------------------SVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175
             SY                       V     ++ VD+++PGCPP A+ +   I  L +
Sbjct: 107 KRSYLELGDVTPQLPQEPGIVPELLDRVSPVHEVINVDLFLPGCPPDADRIRAAIEPLLE 166


>gi|283850497|ref|ZP_06367785.1| hydrogenase (NiFe) small subunit HydA [Desulfovibrio sp. FW1012B]
 gi|283574068|gb|EFC22040.1| hydrogenase (NiFe) small subunit HydA [Desulfovibrio sp. FW1012B]
          Length = 314

 Score = 35.7 bits (81), Expect = 3.3,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 30/72 (41%), Gaps = 3/72 (4%)

Query: 108 SALRRVYDQMPEPRYVISMGSCANGGGY--YHYSYSVVRGCDRIVPV-DIYVPGCPPTAE 164
                     P+ + VI +G+CA  GG      + S  +G    + +  I + GCPP   
Sbjct: 143 PMFETTKKIAPKAKGVICIGACACYGGIQKAKPNPSQAKGVTEGLGIKTINIAGCPPNPI 202

Query: 165 ALIYGILLLQKK 176
             +  ++ + +K
Sbjct: 203 NFVGAVVHVLEK 214


>gi|296169065|ref|ZP_06850725.1| coenzyme F420-reducing hydrogenase, gamma subunit [Mycobacterium
           parascrofulaceum ATCC BAA-614]
 gi|295896256|gb|EFG75917.1| coenzyme F420-reducing hydrogenase, gamma subunit [Mycobacterium
           parascrofulaceum ATCC BAA-614]
          Length = 253

 Score = 35.3 bits (80), Expect = 3.5,   Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 54/155 (34%), Gaps = 41/155 (26%)

Query: 52  TGSLMWMTFGLAC------CAVEMMQASMPRYDLERFGFAPRASPRQS------DVMIVA 99
           T ++        C      C  E++         ++   A  A    +      DV +V 
Sbjct: 6   TLAVWKFASCDGCQLTLLDCEDELLTL------ADQVQIANFAEASSAIVDGPYDVSLVE 59

Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY---------------------YHY 138
           G++T +     RR+++   + + ++++G+CA  GG                      Y  
Sbjct: 60  GSITTRHDE--RRIHEIRQQSKVLVTIGACATAGGVQALRNFADVTEFASIVYAKPEYID 117

Query: 139 SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLL 173
           + +        V VD  +PGCP     L+  +  L
Sbjct: 118 TLATSTPASAHVEVDYQLPGCPIDRGQLLDTLAAL 152


>gi|282165163|ref|YP_003357548.1| F420-non-reducing hydrogenase subunit G [Methanocella paludicola
           SANAE]
 gi|282157477|dbj|BAI62565.1| F420-non-reducing hydrogenase subunit G [Methanocella paludicola
           SANAE]
          Length = 306

 Score = 35.3 bits (80), Expect = 3.5,   Method: Composition-based stats.
 Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 1/28 (3%)

Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILL 172
               ++ VD Y+ GCPP  E  +  ILL
Sbjct: 133 AVGDVIKVDYYITGCPPK-ETFLRKILL 159


>gi|119897705|ref|YP_932918.1| hydrogen dehydrogenase subunit delta [Azoarcus sp. BH72]
 gi|119670118|emb|CAL94031.1| probable hydrogen dehydrogenase, delta subunit [Azoarcus sp. BH72]
          Length = 190

 Score = 35.3 bits (80), Expect = 3.5,   Method: Composition-based stats.
 Identities = 11/24 (45%), Positives = 17/24 (70%)

Query: 143 VRGCDRIVPVDIYVPGCPPTAEAL 166
           VR    +V VD ++PGCPP+ +A+
Sbjct: 144 VRPIHEVVRVDYFLPGCPPSGDAI 167


>gi|119357953|ref|YP_912597.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Chlorobium
           phaeobacteroides DSM 266]
 gi|119355302|gb|ABL66173.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Chlorobium
           phaeobacteroides DSM 266]
          Length = 254

 Score = 35.3 bits (80), Expect = 3.6,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 31/86 (36%), Gaps = 21/86 (24%)

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY---------------YHY 138
           D+  V G+++            +  +    ++ G+CA  GG                 + 
Sbjct: 59  DIAFVEGSISRNDEIERLLTIRRQAKTL--VAFGTCACFGGVNSLKNRFPIEECIAEVYD 116

Query: 139 SYSV----VRGCDRIVPVDIYVPGCP 160
           S  +    VR     V VD+ +PGCP
Sbjct: 117 SQPIESLPVRKISDFVKVDLSIPGCP 142


>gi|313673511|ref|YP_004051622.1| NADH ubiquinone oxidoreductase 20 kda subunit [Calditerrivibrio
           nitroreducens DSM 19672]
 gi|312940267|gb|ADR19459.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Calditerrivibrio
           nitroreducens DSM 19672]
          Length = 176

 Score = 35.3 bits (80), Expect = 3.7,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 48/121 (39%), Gaps = 37/121 (30%)

Query: 90  PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY-------------- 135
           P   DV  V G ++      ++++ +   + R +++MG CA  G                
Sbjct: 48  PESVDVTFVEGAIS--TTEDIKKIKEIRKKSRIIVAMGDCAITGNVPSMRNSFNLNSVID 105

Query: 136 --------------YHYSYSV---VRGCDRIVPVDIYVPGCPPTAEA---LIYGILLLQK 175
                         ++    +   V   + I+ V+ Y+PGCPP A+A   LI  IL  Q+
Sbjct: 106 RGYGENSDNQSKVEFYDLPPLLTNVLPVNSIIHVNFYLPGCPPPADAFYNLIKSILN-QE 164

Query: 176 K 176
           K
Sbjct: 165 K 165


>gi|242279520|ref|YP_002991649.1| hydrogenase (NiFe) small subunit HydA [Desulfovibrio salexigens DSM
           2638]
 gi|242122414|gb|ACS80110.1| hydrogenase (NiFe) small subunit HydA [Desulfovibrio salexigens DSM
           2638]
          Length = 315

 Score = 35.3 bits (80), Expect = 3.7,   Method: Composition-based stats.
 Identities = 17/86 (19%), Positives = 32/86 (37%), Gaps = 14/86 (16%)

Query: 104 NKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI---------VPVDI 154
           +K  +      +       V+++G+CA  GG      ++                 PV +
Sbjct: 127 HKEYTMTEATLEMAKNAAVVVNVGTCAAYGGIPAAEGNLTGSMSVTNFLAENGVKTPV-V 185

Query: 155 YVPGCPPTAE----ALIYGILLLQKK 176
            +PGCPP  +     L+  I  ++ K
Sbjct: 186 NIPGCPPHPDWMVGTLVVAINAIEAK 211


>gi|307354849|ref|YP_003895900.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanoplanus
           petrolearius DSM 11571]
 gi|307158082|gb|ADN37462.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanoplanus
           petrolearius DSM 11571]
          Length = 305

 Score = 35.3 bits (80), Expect = 3.7,   Method: Composition-based stats.
 Identities = 23/115 (20%), Positives = 41/115 (35%), Gaps = 37/115 (32%)

Query: 90  PRQSDVMIVAGTL-TNKMASALRRVYDQMPEPRYVISMGSCANGGGY------------Y 136
           P   D+  V G +   +    L+ +       + ++++G+CA  GG             +
Sbjct: 47  PEGIDIAFVTGAVRNEENRERLKMI---RKRSKVLVALGTCACYGGVSGLSMLSSNAEIF 103

Query: 137 HYSY---SVVRGCDRI---VPV--------------DIYVPGCPPTAEALIYGIL 171
           +  Y   + V    +I   VP               D Y+ GCPP  E  +  I+
Sbjct: 104 NKVYRNGATVGEDGKIPSGVPPFTYRAFAVGDLAMMDYYITGCPPK-ENFLREII 157


>gi|300432249|gb|ADK12980.1| NiFe hydrogenase small subunit [Thiocapsa roseopersicina]
          Length = 179

 Score = 35.3 bits (80), Expect = 3.8,   Method: Composition-based stats.
 Identities = 10/26 (38%), Positives = 18/26 (69%)

Query: 141 SVVRGCDRIVPVDIYVPGCPPTAEAL 166
           + V     +V +D ++PGCPP+A+A+
Sbjct: 131 NQVHPIHEVVAIDYFLPGCPPSADAI 156


>gi|261402747|ref|YP_003246971.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanocaldococcus
           vulcanius M7]
 gi|261369740|gb|ACX72489.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanocaldococcus
           vulcanius M7]
          Length = 216

 Score = 35.3 bits (80), Expect = 3.8,   Method: Composition-based stats.
 Identities = 16/74 (21%), Positives = 31/74 (41%), Gaps = 7/74 (9%)

Query: 95  VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-------HYSYSVVRGCD 147
           + +V G +       + ++ +     + +I++GSCA  GG+        +          
Sbjct: 27  IALVGGAVNLDDEKEVEKIMEIRENSKILIAVGSCAVSGGFQRMLIGLENGFPQRFVRIG 86

Query: 148 RIVPVDIYVPGCPP 161
            +V VD  + GCPP
Sbjct: 87  DVVKVDYAIIGCPP 100


>gi|291288447|ref|YP_003505263.1| hydrogenase (NiFe) small subunit HydA [Denitrovibrio acetiphilus
           DSM 12809]
 gi|290885607|gb|ADD69307.1| hydrogenase (NiFe) small subunit HydA [Denitrovibrio acetiphilus
           DSM 12809]
          Length = 310

 Score = 35.3 bits (80), Expect = 3.8,   Method: Composition-based stats.
 Identities = 19/102 (18%), Positives = 37/102 (36%), Gaps = 16/102 (15%)

Query: 82  FGFAPRASPRQSDVMIVAGTLTNKMASALRR----VYDQMPEPR----YVISMGSCANGG 133
                  +     ++++ G++  +M  A       +YD + +       V++ GSC+  G
Sbjct: 91  LNMLDEVTSAGGHILVLEGSIPAEMKKACMLGEEPLYDALKKHLEKASAVVASGSCSCFG 150

Query: 134 GYYHYSYSVVRGCD--------RIVPVDIYVPGCPPTAEALI 167
           G      +     D         I    I +PGCP   + L+
Sbjct: 151 GIPASGANETGAIDIVQYMRETGISKPLIKIPGCPVHPDRLM 192


>gi|16330686|ref|NP_441414.1| hydrogenase small subunit [Synechocystis sp. PCC 6803]
 gi|1653178|dbj|BAA18094.1| hydrogenase small subunit [Synechocystis sp. PCC 6803]
 gi|1771719|emb|CAA66211.1| hydrogenase subunit [Synechocystis sp. PCC 6803]
          Length = 182

 Score = 35.3 bits (80), Expect = 3.8,   Method: Composition-based stats.
 Identities = 10/19 (52%), Positives = 14/19 (73%)

Query: 143 VRGCDRIVPVDIYVPGCPP 161
           V     ++PVDI++PGCPP
Sbjct: 135 VIPLHEVIPVDIFMPGCPP 153


>gi|289549187|ref|YP_003474175.1| hydrogenase (NiFe) small subunit HydA [Thermocrinis albus DSM
           14484]
 gi|289182804|gb|ADC90048.1| hydrogenase (NiFe) small subunit HydA [Thermocrinis albus DSM
           14484]
          Length = 348

 Score = 35.3 bits (80), Expect = 3.9,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 36/88 (40%), Gaps = 29/88 (32%)

Query: 95  VMIVAGTLTNKMASALRRVY-------------DQMPEPRYVISMGSCANGGGYYHYSYS 141
           ++IV G LT     A   VY             + +   ++++++GSCA  GG      +
Sbjct: 114 ILIVEGALT----PAEDGVYCTVGGKANHHLLREAIDGAKWIVAVGSCACWGGI----PA 165

Query: 142 VVRGCDRIVPVD--------IYVPGCPP 161
                   VP+         +++PGCPP
Sbjct: 166 AYPNPTGAVPISDLVEGKTVVHLPGCPP 193


>gi|51244864|ref|YP_064748.1| methyl viologen-reducing hydrogenase, gamma chain [Desulfotalea
           psychrophila LSv54]
 gi|50875901|emb|CAG35741.1| related to methyl viologen-reducing hydrogenase, gamma chain
           [Desulfotalea psychrophila LSv54]
          Length = 313

 Score = 35.3 bits (80), Expect = 4.0,   Method: Composition-based stats.
 Identities = 25/112 (22%), Positives = 40/112 (35%), Gaps = 36/112 (32%)

Query: 97  IVAGTLTNKMASALRRVYDQMPEPR-YVISMGSCANGGGY------------YHYSYSV- 142
           IV+G + N        V ++M +    +I++G+CA  GG             +   Y   
Sbjct: 67  IVSGGVAN---EEHIEVLEEMRKKCTILIALGTCATHGGIPALMNGQDRAQSWKEIYQTK 123

Query: 143 -------------------VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175
                              V  CD  V +D+ +PGCPP    +   I  L +
Sbjct: 124 TTDPGGEVPNVEVPAPLDRVYACDEKVKIDLQLPGCPPNPAHIAEVIFSLLE 175


>gi|256829746|ref|YP_003158474.1| hydrogenase (NiFe) small subunit HydA [Desulfomicrobium baculatum
           DSM 4028]
 gi|256578922|gb|ACU90058.1| hydrogenase (NiFe) small subunit HydA [Desulfomicrobium baculatum
           DSM 4028]
          Length = 315

 Score = 35.3 bits (80), Expect = 4.1,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 8/58 (13%)

Query: 115 DQMPEPRYVISMGSCANGGGYYHYSYSVVRGC--------DRIVPVDIYVPGCPPTAE 164
           D  P+    +++G+CA  GG    + +V            ++I  + + VPGCPP  +
Sbjct: 144 DLAPKSLATVAIGTCAAYGGIPAAAGNVTGSKSVRDFFAEEKIEKLLVNVPGCPPHPD 201


>gi|225850246|ref|YP_002730480.1| putative [NiFe] hydrogenase, delta subunit [Persephonella marina
           EX-H1]
 gi|225645381|gb|ACO03567.1| putative [NiFe] hydrogenase, delta subunit [Persephonella marina
           EX-H1]
          Length = 249

 Score = 35.3 bits (80), Expect = 4.1,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 33/78 (42%), Gaps = 23/78 (29%)

Query: 122 YVISMGSCANGGGY-----YHYSYSVV----------------RGCDRIVPVDIYVPGCP 160
           YV+++G+C++ GG      +     +V                R     + VD  + GCP
Sbjct: 77  YVVTIGACSSSGGIQSVRNFSDYKDIVCSVYPKPEMIKSLERSRPVSDYIDVDFEIRGCP 136

Query: 161 PTAEALIYGI--LLLQKK 176
              EAL+  I  ++L KK
Sbjct: 137 INKEALLEVIYSVILGKK 154


>gi|260575857|ref|ZP_05843853.1| hydrogenase (NiFe) small subunit HydA [Rhodobacter sp. SW2]
 gi|259022010|gb|EEW25310.1| hydrogenase (NiFe) small subunit HydA [Rhodobacter sp. SW2]
          Length = 358

 Score = 35.3 bits (80), Expect = 4.2,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 6/57 (10%)

Query: 115 DQMPEPRYVISMGSCANGGGYYHYSYSVVR--GCDRIV---PVDIYVPGCPPTAEAL 166
           +   +   VIS+G+CA  GG    + +         I+   PV I + GCPP  EA+
Sbjct: 146 EMAADAMAVISVGTCAAFGGIPMAAPNPTGAVPVSDIISDKPV-INISGCPPIPEAI 201


>gi|114707869|ref|ZP_01440762.1| hypothetical protein FP2506_00150 [Fulvimarina pelagi HTCC2506]
 gi|114536647|gb|EAU39778.1| hypothetical protein FP2506_00150 [Fulvimarina pelagi HTCC2506]
          Length = 391

 Score = 35.3 bits (80), Expect = 4.4,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 4/56 (7%)

Query: 88  ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPR----YVISMGSCANGGGYYHYS 139
           ASPR + + ++AG +  +    LRR++DQMP PR    +   +G        +  S
Sbjct: 28  ASPRHAAIFLIAGRMRLEDREDLRRLHDQMPHPRVTLLWNAEVGEALGDAEVFTGS 83


>gi|330837974|ref|YP_004412554.1| hydrogenase (NiFe) small subunit HydA [Selenomonas sputigena ATCC
           35185]
 gi|329745738|gb|AEB99094.1| hydrogenase (NiFe) small subunit HydA [Selenomonas sputigena ATCC
           35185]
          Length = 368

 Score = 35.3 bits (80), Expect = 4.4,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 7/60 (11%)

Query: 118 PEPRYVISMGSCANGGGYYHYSYSVVRG--CDRIV---PVDIYVPGCPPTAEALIYGILL 172
            +   +I+ G+CA  GG    + +          V   PV I VPGCPP  E ++ G+++
Sbjct: 149 KDAAAIIAYGTCATSGGIQAAAPNPTGSAGVSHYVGNKPV-INVPGCPPIPE-VMTGVVM 206


>gi|284050507|ref|ZP_06380717.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Arthrospira
           platensis str. Paraca]
          Length = 182

 Score = 35.3 bits (80), Expect = 4.4,   Method: Composition-based stats.
 Identities = 11/24 (45%), Positives = 17/24 (70%)

Query: 143 VRGCDRIVPVDIYVPGCPPTAEAL 166
           V     +V VDI++PGCPP+A+ +
Sbjct: 135 VSPVHEVVDVDIFMPGCPPSADRI 158


>gi|268318131|ref|YP_003291850.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Rhodothermus marinus
           DSM 4252]
 gi|262335665|gb|ACY49462.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Rhodothermus marinus
           DSM 4252]
          Length = 260

 Score = 35.3 bits (80), Expect = 4.5,   Method: Composition-based stats.
 Identities = 30/150 (20%), Positives = 53/150 (35%), Gaps = 37/150 (24%)

Query: 52  TGSLMWMTFGLAC------CAVEMMQASMP---RYDLERFGFAPRASPRQSDVMIVAGTL 102
             ++        C      C  E++  +      Y LE      R      D+ +V G++
Sbjct: 7   KLAVWKFASCDGCQLSLLDCEDELLAVAGAIEIAYFLEASRATVRGP---YDLSLVEGSI 63

Query: 103 TNKM-ASALRRVYDQMPEPRYVISMGSCANGGGY---------------------YHYSY 140
           T    A  +R++  Q    R+++++G+CA  GG                      Y  + 
Sbjct: 64  TTPHDAERIRQIRQQ---SRFLVTIGACATAGGIQALRNFQDVAEFTRIVYARPEYIETL 120

Query: 141 SVVRGCDRIVPVDIYVPGCPPTAEALIYGI 170
           +        VPVD  + GCP   + L+  I
Sbjct: 121 ATSTPIAEHVPVDFELRGCPINKQQLLEVI 150


>gi|212704477|ref|ZP_03312605.1| hypothetical protein DESPIG_02533 [Desulfovibrio piger ATCC 29098]
 gi|212672044|gb|EEB32527.1| hypothetical protein DESPIG_02533 [Desulfovibrio piger ATCC 29098]
          Length = 317

 Score = 34.9 bits (79), Expect = 4.6,   Method: Composition-based stats.
 Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 12/80 (15%)

Query: 106 MASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV-----VRGCDRIVPVDIY---VP 157
           M    +RV   +P+ + V++MG+CA  GG      +      V  C   + +D+    +P
Sbjct: 143 MLDLCKRV---LPKAKAVVTMGTCAAYGGVQAAKPNPTGSVGVNDCFAKLGMDVKAINIP 199

Query: 158 GCPPTAEALIYGILL-LQKK 176
           GCPP    L+  ++  LQ K
Sbjct: 200 GCPPNPLNLVGTLVAFLQNK 219


>gi|172037231|ref|YP_001803732.1| hydrogenase small subunit [Cyanothece sp. ATCC 51142]
 gi|171698685|gb|ACB51666.1| hydrogenase small subunit [Cyanothece sp. ATCC 51142]
          Length = 181

 Score = 34.9 bits (79), Expect = 4.6,   Method: Composition-based stats.
 Identities = 11/33 (33%), Positives = 18/33 (54%)

Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175
           V     ++ VD+++PGCPP A  +   I  L +
Sbjct: 134 VSPVHEVIKVDLFLPGCPPDAHRIRAAIEPLLQ 166


>gi|296132285|ref|YP_003639532.1| hydrogenase (NiFe) small subunit HydA [Thermincola sp. JR]
 gi|296030863|gb|ADG81631.1| hydrogenase (NiFe) small subunit HydA [Thermincola potens JR]
          Length = 362

 Score = 34.9 bits (79), Expect = 4.6,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 5/68 (7%)

Query: 115 DQMPEPRYVISMGSCANGGGYYHYSYS---VVRGCDRIVPVDIYVPGCPPTAEALIYGI- 170
           +      YV+++G+CA+ GG      +        D I    + +PGCP   + ++  I 
Sbjct: 144 EAATNAAYVVAVGTCASFGGIPAADPNPTQCKGVADVIGGTVVNIPGCPAHPDWIVGTIV 203

Query: 171 -LLLQKKI 177
            +LL  K+
Sbjct: 204 SILLFNKV 211


>gi|260887607|ref|ZP_05898870.1| quinone-reactive Ni/Fe-hydrogenase, small subunit [Selenomonas
           sputigena ATCC 35185]
 gi|260862623|gb|EEX77123.1| quinone-reactive Ni/Fe-hydrogenase, small subunit [Selenomonas
           sputigena ATCC 35185]
          Length = 362

 Score = 34.9 bits (79), Expect = 4.6,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 7/60 (11%)

Query: 118 PEPRYVISMGSCANGGGYYHYSYSVVRG--CDRIV---PVDIYVPGCPPTAEALIYGILL 172
            +   +I+ G+CA  GG    + +          V   PV I VPGCPP  E ++ G+++
Sbjct: 143 KDAAAIIAYGTCATSGGIQAAAPNPTGSAGVSHYVGNKPV-INVPGCPPIPE-VMTGVVM 200


>gi|51244012|ref|YP_063896.1| periplasmic [NiFeSe] hydrogenase, small subunit [precursor]
           [Desulfotalea psychrophila LSv54]
 gi|50875049|emb|CAG34889.1| related to periplasmic [NiFeSe] hydrogenase, small subunit
           [Precursor] [Desulfotalea psychrophila LSv54]
          Length = 300

 Score = 34.9 bits (79), Expect = 4.6,   Method: Composition-based stats.
 Identities = 24/160 (15%), Positives = 48/160 (30%), Gaps = 36/160 (22%)

Query: 50  ARTGSLMWMTFGLACCAVEM--------------------MQASMPRYDLERFGFAPRAS 89
            R+  L       + C++ M                                     ++ 
Sbjct: 40  GRSKVLWLQAQSCSGCSISMLDSESPGPAELLTQYISLLFHHTLSAATGESCMHIVRKSV 99

Query: 90  PRQSDVMIVAGTLTNKMASALRR--------VYDQMPEPRYVISMGSCANGGGYYHYSYS 141
            +   +++V G++   M  A           +        YVI++G+CA  GG      +
Sbjct: 100 QQGGYILVVEGSIPAGMPEACMMGGIPVGELIKQAAERADYVIALGTCAAFGGIPAAEGN 159

Query: 142 VVRGC--------DRIVPVDIYVPGCPPTAEALIYGILLL 173
                        ++I    I +PGCP   + L+  ++ L
Sbjct: 160 PTGAVPLGPFLQANKIKTPIINIPGCPSHPDWLVGTLVHL 199


>gi|66773928|sp|Q7ZZV4|TSHB_ANGJA RecName: Full=Thyrotropin subunit beta; AltName:
           Full=Thyroid-stimulating hormone subunit beta;
           Short=TSH-B; Short=TSH-beta; AltName: Full=Thyrotropin
           beta chain; Flags: Precursor
 gi|30313578|gb|AAO17791.1| thyroid stimulating hormone beta subunit precursor [Anguilla
           japonica]
 gi|46093512|dbj|BAD14300.1| thyroid-stimulating hormone beta subunit [Anguilla japonica]
          Length = 147

 Score = 34.9 bits (79), Expect = 4.6,   Method: Composition-based stats.
 Identities = 15/80 (18%), Positives = 32/80 (40%), Gaps = 12/80 (15%)

Query: 95  VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV-- 152
           + ++AG + +  +     +Y + PE  + +++ +    G  Y    +VV    + + V  
Sbjct: 11  LCLLAGQVLSICSPVDYTLYVEKPECDFCVAINTTICMGFCYSLDPNVVGPAVKRLAVQR 70

Query: 153 ----------DIYVPGCPPT 162
                        +PGCPP 
Sbjct: 71  GCTYQAVEYRTAELPGCPPH 90


>gi|83310749|ref|YP_421013.1| Ni,Fe-hydrogenase I small subunit [Magnetospirillum magneticum
           AMB-1]
 gi|82945590|dbj|BAE50454.1| Ni,Fe-hydrogenase I small subunit [Magnetospirillum magneticum
           AMB-1]
          Length = 376

 Score = 34.9 bits (79), Expect = 4.7,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 6/54 (11%)

Query: 123 VISMGSCANGGGYYHYSYSVVRG--CDRIV---PVDIYVPGCPPTAEALIYGIL 171
           VI++GSCA+ GG      +         I+   PV + +PGCPP     +  ++
Sbjct: 155 VIAIGSCASWGGMPSTPPNPTGSTGVPEILAPKPV-VTIPGCPPNPYNFLSTVV 207


>gi|149038542|gb|EDL92872.1| methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like
           (predicted), isoform CRA_a [Rattus norvegicus]
          Length = 86

 Score = 34.9 bits (79), Expect = 4.8,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 36/81 (44%), Gaps = 6/81 (7%)

Query: 67  VEMMQASMPRYDL-ERFGFAPRAS-----PRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           + ++  +    D+ ER G    AS     P  ++ + V G LT  M  A++    Q  E 
Sbjct: 1   MAVLALTDSLADMKERLGRMVVASDKDGQPVTAEDLGVTGALTVLMKDAIKPNLMQTLET 60

Query: 121 RYVISMGSCANGGGYYHYSYS 141
            ++ +MG+ +      + SY+
Sbjct: 61  VWLTAMGTYSLTQRETNQSYA 81


>gi|23296068|gb|AAN12285.1| hydrogenase small subunit [Aquifex pyrophilus]
          Length = 280

 Score = 34.9 bits (79), Expect = 4.9,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 11/78 (14%)

Query: 95  VMIVAGTLTNK---MASALRRVYDQMPEPR----YVISMGSCANGGGYYHYSYSVVR--G 145
           +++V G++T          R  Y+ + E      +V+S+GSCA+ GG    S +      
Sbjct: 79  ILVVEGSVTPNGVYCTVGGRSNYELLKEAAENAAFVVSVGSCASWGGIPKASPNPTGAVP 138

Query: 146 CDRIVP--VDIYVPGCPP 161
              ++     + VPGCPP
Sbjct: 139 VYEVIKDKTVVNVPGCPP 156


>gi|218244987|ref|YP_002370358.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Cyanothece sp. PCC
           8801]
 gi|257058011|ref|YP_003135899.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Cyanothece sp. PCC
           8802]
 gi|218165465|gb|ACK64202.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Cyanothece sp. PCC
           8801]
 gi|256588177|gb|ACU99063.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Cyanothece sp. PCC
           8802]
          Length = 181

 Score = 34.9 bits (79), Expect = 5.0,   Method: Composition-based stats.
 Identities = 8/19 (42%), Positives = 13/19 (68%)

Query: 143 VRGCDRIVPVDIYVPGCPP 161
           V     ++ VD+++PGCPP
Sbjct: 134 VSPLHEVITVDLFIPGCPP 152


>gi|194337504|ref|YP_002019298.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Pelodictyon
           phaeoclathratiforme BU-1]
 gi|194309981|gb|ACF44681.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Pelodictyon
           phaeoclathratiforme BU-1]
          Length = 258

 Score = 34.9 bits (79), Expect = 5.0,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 36/86 (41%), Gaps = 21/86 (24%)

Query: 94  DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGG----------------YYH 137
           D+ ++ G+++ +    + R+     + + +++ G+CA  GG                 Y 
Sbjct: 63  DIALIEGSISRQ--DEVERLLKIRQQAKILVAFGTCACFGGINSLKNRFPAREMIDAVYP 120

Query: 138 YSY---SVVRGCDRIVPVDIYVPGCP 160
                   VR    +V VD+ +PGCP
Sbjct: 121 GMPIETLPVRKISDVVKVDLSIPGCP 146


>gi|198475573|ref|XP_002132955.1| GA26108 [Drosophila pseudoobscura pseudoobscura]
 gi|198138883|gb|EDY70357.1| GA26108 [Drosophila pseudoobscura pseudoobscura]
          Length = 17011

 Score = 34.9 bits (79), Expect = 5.0,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 25/63 (39%)

Query: 101  TLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCP 160
             +  K       V  Q  E + V  + +C    GY    Y++ R  +   PV IYV  C 
Sbjct: 8620 CVNQKCRDPCPGVCGQSAECQVVNHLATCNCLIGYTGDPYTLCRIVENEPPVAIYVNPCQ 8679

Query: 161  PTA 163
            P+ 
Sbjct: 8680 PSP 8682


>gi|239906199|ref|YP_002952938.1| NiFe hydrogenase small subunit [Desulfovibrio magneticus RS-1]
 gi|239796063|dbj|BAH75052.1| NiFe hydrogenase small subunit [Desulfovibrio magneticus RS-1]
          Length = 314

 Score = 34.9 bits (79), Expect = 5.1,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 26/62 (41%), Gaps = 3/62 (4%)

Query: 118 PEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP---VDIYVPGCPPTAEALIYGILLLQ 174
           P+ + VI +G+CA  GG      +  +            I + GCPP     I  ++ + 
Sbjct: 153 PKAKGVICIGTCAAYGGIQKAKPNPSQSISVTEATGLATINIAGCPPNPINFIGAVVHVL 212

Query: 175 KK 176
           +K
Sbjct: 213 EK 214


>gi|206890223|ref|YP_002249169.1| F420-non-reducing hydrogenase subunit G [Thermodesulfovibrio
           yellowstonii DSM 11347]
 gi|206742161|gb|ACI21218.1| F420-non-reducing hydrogenase subunit G [Thermodesulfovibrio
           yellowstonii DSM 11347]
          Length = 318

 Score = 34.9 bits (79), Expect = 5.1,   Method: Composition-based stats.
 Identities = 12/30 (40%), Positives = 15/30 (50%)

Query: 144 RGCDRIVPVDIYVPGCPPTAEALIYGILLL 173
           R  D +V VD Y+ GCPP  E +      L
Sbjct: 152 RPLDEVVKVDYYIGGCPPHYEHVKAAFTAL 181


>gi|299067004|emb|CBJ38199.1| Molybdopterin biosynthesis protein [Ralstonia solanacearum CMR15]
          Length = 429

 Score = 34.9 bits (79), Expect = 5.3,   Method: Composition-based stats.
 Identities = 17/85 (20%), Positives = 34/85 (40%), Gaps = 9/85 (10%)

Query: 58  MTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL-------TNKMASAL 110
           +   L+   VE++   + R D E      R++   +D +I +G +       T +M + L
Sbjct: 227 LHGMLSHLGVELIDMGVVRDDPEAMEATFRSAAENADAIITSGGVSVGEADFTKQMMAQL 286

Query: 111 --RRVYDQMPEPRYVISMGSCANGG 133
                +     P   ++ G  A+ G
Sbjct: 287 GDVTFWKIAMRPGRPMAFGRIASNG 311


>gi|170698951|ref|ZP_02890010.1| conserved hypothetical protein [Burkholderia ambifaria IOP40-10]
 gi|170136131|gb|EDT04400.1| conserved hypothetical protein [Burkholderia ambifaria IOP40-10]
          Length = 411

 Score = 34.9 bits (79), Expect = 5.4,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 3/51 (5%)

Query: 66  AVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQ 116
            ++      P +D+ R GF+   + R SD+    G +T +M  AL   Y+Q
Sbjct: 89  DLDQSVIGNPVHDVLRLGFSLATAARSSDL---PGIITWRMIEALVDGYEQ 136


>gi|120405068|ref|YP_954897.1| hydrogen dehydrogenase [Mycobacterium vanbaalenii PYR-1]
 gi|119957886|gb|ABM14891.1| Hydrogen dehydrogenase [Mycobacterium vanbaalenii PYR-1]
          Length = 205

 Score = 34.9 bits (79), Expect = 5.4,   Method: Composition-based stats.
 Identities = 11/25 (44%), Positives = 17/25 (68%)

Query: 143 VRGCDRIVPVDIYVPGCPPTAEALI 167
           V  C  +V +D ++PGCPP A+A+ 
Sbjct: 159 VYPCHEVVKMDYFIPGCPPDADAIF 183


>gi|209525019|ref|ZP_03273563.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Arthrospira maxima
           CS-328]
 gi|209494428|gb|EDZ94739.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Arthrospira maxima
           CS-328]
          Length = 182

 Score = 34.9 bits (79), Expect = 5.7,   Method: Composition-based stats.
 Identities = 11/24 (45%), Positives = 17/24 (70%)

Query: 143 VRGCDRIVPVDIYVPGCPPTAEAL 166
           V     +V VDI++PGCPP+A+ +
Sbjct: 135 VTPVHEVVDVDIFMPGCPPSADRI 158


>gi|130179|sp|P13063|PHSS_DESBA RecName: Full=Periplasmic [NiFeSe] hydrogenase small subunit;
           AltName: Full=NiFeSe hydrogenlyase small chain; Flags:
           Precursor
 gi|145103|gb|AAA23376.1| small hydrogenase subunit precursor [Desulfomicrobium baculatum]
          Length = 315

 Score = 34.5 bits (78), Expect = 6.1,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 26/58 (44%), Gaps = 8/58 (13%)

Query: 115 DQMPEPRYVISMGSCANGGGYYHYSYSVVRG--------CDRIVPVDIYVPGCPPTAE 164
           D  P+    +++G+C+  GG      +V            ++I  + + VPGCPP  +
Sbjct: 144 DLAPKSLATVAVGTCSAYGGIPAAEGNVTGSKSVRDFFADEKIEKLLVNVPGCPPHPD 201


>gi|86160579|ref|YP_467364.1| methyl-viologen-reducing hydrogenase subunit delta
           [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85777090|gb|ABC83927.1| Methyl-viologen-reducing hydrogenase, delta subunit
           [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 491

 Score = 34.5 bits (78), Expect = 6.2,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 16/30 (53%), Gaps = 3/30 (10%)

Query: 145 GCDRIVPVDIYVPGCPPTA---EALIYGIL 171
               +V VD  +PGCPP+    +A +  +L
Sbjct: 317 TLADVVSVDYTIPGCPPSPAVVQAALDALL 346


>gi|5542157|pdb|1CC1|S Chain S, Crystal Structure Of A Reduced, Active Form Of The
           Ni-Fe-Se Hydrogenase From Desulfomicrobium Baculatum
          Length = 283

 Score = 34.5 bits (78), Expect = 6.3,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 26/58 (44%), Gaps = 8/58 (13%)

Query: 115 DQMPEPRYVISMGSCANGGGYYHYSYSVVRG--------CDRIVPVDIYVPGCPPTAE 164
           D  P+    +++G+C+  GG      +V            ++I  + + VPGCPP  +
Sbjct: 112 DLAPKSLATVAVGTCSAYGGIPAAEGNVTGSKSVRDFFADEKIEKLLVNVPGCPPHPD 169


>gi|257054866|ref|YP_003132698.1| Ni,Fe-hydrogenase I small subunit [Saccharomonospora viridis DSM
           43017]
 gi|256584738|gb|ACU95871.1| Ni,Fe-hydrogenase I small subunit [Saccharomonospora viridis DSM
           43017]
          Length = 350

 Score = 34.5 bits (78), Expect = 6.4,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 32/73 (43%), Gaps = 13/73 (17%)

Query: 111 RRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI------------VPVDIYVPG 158
           R + +  P+   V+++G+CA  GG +  + +       +            +PV I VPG
Sbjct: 121 RWIDELAPKAWAVVAIGTCATYGGIHAMAGNPTGCMGLVDYLGEDFRSAGGLPV-INVPG 179

Query: 159 CPPTAEALIYGIL 171
           CP   +  +  +L
Sbjct: 180 CPVQPDNFMETLL 192


>gi|197119510|ref|YP_002139937.1| [NiFe]-hydrogenase small subunit [Geobacter bemidjiensis Bem]
 gi|197088870|gb|ACH40141.1| periplasmically oriented, membrane-bound [NiFe]-hydrogenase small
           subunit [Geobacter bemidjiensis Bem]
          Length = 368

 Score = 34.5 bits (78), Expect = 6.4,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 39/91 (42%), Gaps = 15/91 (16%)

Query: 95  VMIVAGTL-TNKMASALR--------RVYDQMPEPRYVISMGSCANGGGYYHYSYSV--- 142
           +++V G + T +     +         + +       +IS+G+CA+ GG    + +    
Sbjct: 111 ILVVEGAIPTKQNGIFCKVSGKTAMESLQEAAKGAAAIISIGTCASYGGIQSVAPNPTGA 170

Query: 143 --VRGCDRIVPVDIYVPGCPPTAEALIYGIL 171
             VR   +  P+ I +PGCPP     +  +L
Sbjct: 171 VGVRDIVKDKPI-INIPGCPPNPYNFLSTVL 200


>gi|187927997|ref|YP_001898484.1| molybdenum cofactor synthesis domain-containing protein [Ralstonia
           pickettii 12J]
 gi|187724887|gb|ACD26052.1| molybdenum cofactor synthesis domain protein [Ralstonia pickettii
           12J]
          Length = 426

 Score = 34.5 bits (78), Expect = 6.5,   Method: Composition-based stats.
 Identities = 17/85 (20%), Positives = 33/85 (38%), Gaps = 9/85 (10%)

Query: 58  MTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL-------TNKMASAL 110
           +   L+   VE++   + R D      A R +   +D +I +G +       T +M + L
Sbjct: 224 LHGMLSRLGVELLDMGVVRDDPAALEAAFRTAAENADAIITSGGVSVGEADFTKQMMAKL 283

Query: 111 --RRVYDQMPEPRYVISMGSCANGG 133
                +     P   ++ G  A+ G
Sbjct: 284 GDVTFWKIAMRPGRPMAFGRIASNG 308


>gi|159485550|ref|XP_001700807.1| hypothetical protein CHLREDRAFT_167776 [Chlamydomonas reinhardtii]
 gi|158281306|gb|EDP07061.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 1636

 Score = 34.5 bits (78), Expect = 6.6,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 24/73 (32%), Gaps = 4/73 (5%)

Query: 35  HKGFLVTSVDQLVTWARTGSLMWMTFGLACCA-VEMMQASMPRYDLERFGF---APRASP 90
            +G  VT       +    +      G   C   E   A+ P+Y++ R+           
Sbjct: 458 SEGVDVTHPILAYNYGVVCAPWHARGGDGSCNQAEYGSATTPQYNVSRYSIPTTIFTGGL 517

Query: 91  RQSDVMIVAGTLT 103
              DV  VA  LT
Sbjct: 518 DALDVTDVADELT 530


>gi|322420606|ref|YP_004199829.1| hydrogenase (NiFe) small subunit HydA [Geobacter sp. M18]
 gi|320126993|gb|ADW14553.1| hydrogenase (NiFe) small subunit HydA [Geobacter sp. M18]
          Length = 369

 Score = 34.5 bits (78), Expect = 7.0,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 38/91 (41%), Gaps = 15/91 (16%)

Query: 95  VMIVAGTL-TNKMASALRRVYDQMPEP--------RYVISMGSCANGGGYYHYSYSV--- 142
           +++V G + T +     +       E           +I +G+CA+ GG    S +    
Sbjct: 111 ILVVEGAIPTKQNGIFCKVSGKTALESLQHAAEGAAAIICIGTCASYGGIQSVSPNPTGA 170

Query: 143 --VRGCDRIVPVDIYVPGCPPTAEALIYGIL 171
             VR   +  P+ I +PGCPP+    +  +L
Sbjct: 171 VGVRDIIKDKPI-INIPGCPPSPYNFLSTVL 200


>gi|115358836|ref|YP_775974.1| hypothetical protein Bamb_4087 [Burkholderia ambifaria AMMD]
 gi|115284124|gb|ABI89640.1| conserved hypothetical protein [Burkholderia ambifaria AMMD]
          Length = 420

 Score = 34.5 bits (78), Expect = 7.3,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 3/51 (5%)

Query: 66  AVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQ 116
            ++      P +D+ R GF+   + R SD+    G +T +M  AL   Y+Q
Sbjct: 98  DLDQSVIGNPVHDVLRLGFSLATAARSSDL---PGIITWRMIEALADGYEQ 145


>gi|325529798|gb|EGD06648.1| hypothetical protein B1M_00395 [Burkholderia sp. TJI49]
          Length = 411

 Score = 34.5 bits (78), Expect = 7.3,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 16/74 (21%)

Query: 66  AVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVY----------- 114
            ++      P +D+ R GF+   + R SD+    G +T +M  AL   Y           
Sbjct: 89  DLDQSVIGNPVHDVLRLGFSLATAARSSDL---PGVITWRMIEALIDGYERAFDSRRRAE 145

Query: 115 -DQMPEPRYV-ISM 126
            D+MP P  V I+M
Sbjct: 146 LDRMPRPTAVKIAM 159


>gi|300692000|ref|YP_003752995.1| molybdopterin biosynthesis protein [Ralstonia solanacearum PSI07]
 gi|299079060|emb|CBJ51722.1| Molybdopterin biosynthesis protein [Ralstonia solanacearum PSI07]
          Length = 429

 Score = 34.5 bits (78), Expect = 7.5,   Method: Composition-based stats.
 Identities = 17/85 (20%), Positives = 33/85 (38%), Gaps = 9/85 (10%)

Query: 58  MTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL-------TNKMASAL 110
           +   L+   VE++   + R D      A R +   +D +I +G +       T +M + L
Sbjct: 227 LHGMLSRLGVELIDMGVVRDDPAALEAAFRTAAENADAIITSGGVSVGEADFTKQMMAQL 286

Query: 111 --RRVYDQMPEPRYVISMGSCANGG 133
                +     P   ++ G  A+ G
Sbjct: 287 GDVTFWKIAMRPGRPMAFGRIASNG 311


>gi|207725241|ref|YP_002255637.1| molybdopterin biosynthesis moea protein [Ralstonia solanacearum
           MolK2]
 gi|206590475|emb|CAQ37437.1| molybdopterin biosynthesis moea protein [Ralstonia solanacearum
           MolK2]
          Length = 418

 Score = 34.5 bits (78), Expect = 7.6,   Method: Composition-based stats.
 Identities = 18/89 (20%), Positives = 35/89 (39%), Gaps = 10/89 (11%)

Query: 58  MTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL-------TNKMASAL 110
           +   L+   VE++   + R D      A R +   +D +I +G +       T +M + L
Sbjct: 216 LHGMLSRLGVELIDMGVVRDDPAALETAFRTAAENADAIITSGGVSVGEADFTKQMMAQL 275

Query: 111 --RRVYDQMPEPRYVISMGSCANGG-GYY 136
                +     P   ++ G  A+ G G +
Sbjct: 276 GDVTFWKIAMRPGRPMAFGRIASNGHGAF 304


>gi|308051435|ref|YP_003915001.1| molybdopterin molybdochelatase [Ferrimonas balearica DSM 9799]
 gi|307633625|gb|ADN77927.1| molybdopterin molybdochelatase [Ferrimonas balearica DSM 9799]
          Length = 415

 Score = 34.1 bits (77), Expect = 7.8,   Method: Composition-based stats.
 Identities = 29/141 (20%), Positives = 56/141 (39%), Gaps = 17/141 (12%)

Query: 52  TGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALR 111
             +L  M   + C   E+    +   DLE+   A R +  ++DV+I +G ++   A  ++
Sbjct: 211 RHALRSMLTAMGC---EVRDLGVIPDDLEQVRAAFRRADAEADVVITSGGVSVGEADFIK 267

Query: 112 RVYDQM---------PEPRYVISMGSCAN---GGGYYHYSYSVVRGCDRIVPVDIYVPGC 159
            V D+M          +P    + G   N    G   +   S+V     + P+  ++ G 
Sbjct: 268 VVLDEMGQISFWKLAIKPGKPFAFGRLPNAWFCGLPGNPVSSMVTCYQLVQPLLAHLAGE 327

Query: 160 PPTAEALIYGILLLQKKIRRV 180
           P      +  +  LQ  +R+ 
Sbjct: 328 PFRPALTLDAV--LQDDLRKA 346


>gi|207743616|ref|YP_002260008.1| molybdopterin biosynthesis moea protein [Ralstonia solanacearum
           IPO1609]
 gi|206595015|emb|CAQ61942.1| molybdopterin biosynthesis moea protein [Ralstonia solanacearum
           IPO1609]
          Length = 418

 Score = 34.1 bits (77), Expect = 7.8,   Method: Composition-based stats.
 Identities = 17/85 (20%), Positives = 33/85 (38%), Gaps = 9/85 (10%)

Query: 58  MTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL-------TNKMASAL 110
           +   L+   VE++   + R D      A R +   +D +I +G +       T +M + L
Sbjct: 216 LHGMLSRLGVELIDMGVVRDDPAALEAAFRTAAENADAIITSGGVSVGEADFTKQMMAQL 275

Query: 111 --RRVYDQMPEPRYVISMGSCANGG 133
                +     P   ++ G  A+ G
Sbjct: 276 GDVTFWKIAMRPGRPMAFGRIASNG 300


>gi|317050636|ref|YP_004111752.1| hydrogenase (NiFe) small subunit HydA [Desulfurispirillum indicum
           S5]
 gi|316945720|gb|ADU65196.1| hydrogenase (NiFe) small subunit HydA [Desulfurispirillum indicum
           S5]
          Length = 314

 Score = 34.1 bits (77), Expect = 8.1,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 33/94 (35%), Gaps = 16/94 (17%)

Query: 94  DVMIVAGTLTNKMASALRRVYDQM--------PEPRYVISMGSCANGGGYYHYSYSVVRG 145
            V+++ G++   M       +  M        P+    I+ G+CA+ GG           
Sbjct: 110 FVLVLEGSIPVSMPHTCMVGHRTMDSWMERILPKATACIAAGTCASFGGITKMPGMDTGC 169

Query: 146 CD--------RIVPVDIYVPGCPPTAEALIYGIL 171
                           I +PGCP   E L+Y +L
Sbjct: 170 MGLLQYSSFKGYTTPLITLPGCPMKPEHLLYALL 203


>gi|241662579|ref|YP_002980939.1| molybdenum cofactor synthesis domain-containing protein [Ralstonia
           pickettii 12D]
 gi|240864606|gb|ACS62267.1| molybdenum cofactor synthesis domain protein [Ralstonia pickettii
           12D]
          Length = 426

 Score = 34.1 bits (77), Expect = 8.1,   Method: Composition-based stats.
 Identities = 17/85 (20%), Positives = 33/85 (38%), Gaps = 9/85 (10%)

Query: 58  MTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL-------TNKMASAL 110
           +   L+   VE++   + R D      A R +   +D +I +G +       T +M + L
Sbjct: 224 LHGMLSRLGVELLDMGVVRDDPAALETAFRTAAENADAIITSGGVSVGEADFTKQMMAKL 283

Query: 111 --RRVYDQMPEPRYVISMGSCANGG 133
                +     P   ++ G  A+ G
Sbjct: 284 GDVTFWKIAMRPGRPMAFGRIASNG 308


>gi|83748468|ref|ZP_00945490.1| Molybdopterin biosynthesis MoeA protein [Ralstonia solanacearum
           UW551]
 gi|83724879|gb|EAP72035.1| Molybdopterin biosynthesis MoeA protein [Ralstonia solanacearum
           UW551]
          Length = 428

 Score = 34.1 bits (77), Expect = 8.3,   Method: Composition-based stats.
 Identities = 17/85 (20%), Positives = 33/85 (38%), Gaps = 9/85 (10%)

Query: 58  MTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL-------TNKMASAL 110
           +   L+   VE++   + R D      A R +   +D +I +G +       T +M + L
Sbjct: 226 LHGMLSRLGVELIDMGVVRDDPAALEAAFRTAAENADAIITSGGVSVGEADFTKQMMAQL 285

Query: 111 --RRVYDQMPEPRYVISMGSCANGG 133
                +     P   ++ G  A+ G
Sbjct: 286 GDVTFWKIAMRPGRPMAFGRIASNG 310


>gi|166368535|ref|YP_001660808.1| hydrogenase subunit of the bidirectional hydrogenase [Microcystis
           aeruginosa NIES-843]
 gi|159028666|emb|CAO88137.1| hoxY [Microcystis aeruginosa PCC 7806]
 gi|166090908|dbj|BAG05616.1| hydrogenase subunit of the bidirectional hydrogenase [Microcystis
           aeruginosa NIES-843]
          Length = 182

 Score = 34.1 bits (77), Expect = 8.4,   Method: Composition-based stats.
 Identities = 10/24 (41%), Positives = 18/24 (75%)

Query: 143 VRGCDRIVPVDIYVPGCPPTAEAL 166
           V    +++P+DI++PGCPP A+ +
Sbjct: 135 VLPVHQVIPIDIFMPGCPPDADRI 158


>gi|14719750|pdb|1E3D|A Chain A, [nife] Hydrogenase From Desulfovibrio Desulfuricans Atcc
           27774
 gi|14719752|pdb|1E3D|C Chain C, [nife] Hydrogenase From Desulfovibrio Desulfuricans Atcc
           27774
 gi|7239221|gb|AAF43137.1|AF216303_1 [NiFe] hydrogenase small subunit [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
          Length = 266

 Score = 34.1 bits (77), Expect = 8.8,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 28/70 (40%), Gaps = 21/70 (30%)

Query: 106 MASALRRVYDQMPEPRYVISMGSCANGGGY------------YHYSYSVVRGCDRIVPVD 153
           M    + +   +P+ + V+S+G+CA  GG              +  Y+ +          
Sbjct: 94  MYDICKNI---LPKAKAVVSIGTCACYGGIQAAKPNPTAAKGINDCYADLGVKA------ 144

Query: 154 IYVPGCPPTA 163
           I VPGCPP  
Sbjct: 145 INVPGCPPNP 154


>gi|289192915|ref|YP_003458856.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanocaldococcus
           sp. FS406-22]
 gi|288939365|gb|ADC70120.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanocaldococcus
           sp. FS406-22]
          Length = 208

 Score = 34.1 bits (77), Expect = 9.0,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 33/79 (41%), Gaps = 7/79 (8%)

Query: 95  VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-------HYSYSVVRGCD 147
           +++V G +       + ++ +     + +I++GSCA  GG+        +          
Sbjct: 27  IVLVGGAVNLDDEEEVNKIKEIRKNAKILIAVGSCAVSGGFQRMLIGLENGFPQRFVRVG 86

Query: 148 RIVPVDIYVPGCPPTAEAL 166
            +V VD  + GC P  E +
Sbjct: 87  DVVKVDYAIIGCQPDEEEV 105


>gi|157144671|ref|YP_001451990.1| DNA-binding transcriptional activator XapR [Citrobacter koseri ATCC
           BAA-895]
 gi|157081876|gb|ABV11554.1| hypothetical protein CKO_00391 [Citrobacter koseri ATCC BAA-895]
          Length = 294

 Score = 34.1 bits (77), Expect = 9.0,   Method: Composition-based stats.
 Identities = 24/109 (22%), Positives = 41/109 (37%), Gaps = 18/109 (16%)

Query: 56  MWMTFGLACC-AVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVY 114
           M     LACC A+ +        D  R  +        +D   +   +  K A     + 
Sbjct: 176 MPEDHPLACCPAIPL--------DALRNEYFVTMPSIHTDWAFLQ-RVCQK-AGFTPMIV 225

Query: 115 DQMPEPRYVISMGSCANGGGYYHYSYS-------VVRGCDRIVPVDIYV 156
            ++ EP+ V++M S   G      SY+       V R  +  +P D+Y+
Sbjct: 226 REVMEPQTVLAMISMGIGITLIADSYAQMNWPGVVFRPLEERIPADLYI 274


>gi|220904312|ref|YP_002479624.1| hydrogenase (NiFe) small subunit HydA [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
 gi|229463018|sp|P13061|PHNS_DESDA RecName: Full=Periplasmic [NiFe] hydrogenase small subunit;
           AltName: Full=NiFe hydrogenlyase small chain; Flags:
           Precursor
 gi|219868611|gb|ACL48946.1| hydrogenase (NiFe) small subunit HydA [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
          Length = 315

 Score = 34.1 bits (77), Expect = 9.2,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 28/70 (40%), Gaps = 21/70 (30%)

Query: 106 MASALRRVYDQMPEPRYVISMGSCANGGGY------------YHYSYSVVRGCDRIVPVD 153
           M    + +   +P+ + V+S+G+CA  GG              +  Y+ +          
Sbjct: 143 MYDICKNI---LPKAKAVVSIGTCACYGGIQAAKPNPTAAKGINDCYADLGVKA------ 193

Query: 154 IYVPGCPPTA 163
           I VPGCPP  
Sbjct: 194 INVPGCPPNP 203


>gi|226225819|ref|YP_002759925.1| NiFe uptake hydrogenase small subunit [Gemmatimonas aurantiaca
           T-27]
 gi|226089010|dbj|BAH37455.1| NiFe uptake hydrogenase small subunit [Gemmatimonas aurantiaca
           T-27]
          Length = 323

 Score = 34.1 bits (77), Expect = 9.3,   Method: Composition-based stats.
 Identities = 20/113 (17%), Positives = 35/113 (30%), Gaps = 34/113 (30%)

Query: 91  RQSDVMIVAGTL-----------TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS 139
           RQ D+ +  GT+                  +  V +       V+++G CA  GG     
Sbjct: 64  RQLDIFVFEGTVILGPNKTGRFNMFADRPMMDWVRELASHAGAVVALGDCACWGGIPATE 123

Query: 140 YSVVRGCDR-------------------IVPVDIYVPGCPPTAE---ALIYGI 170
            + V                         +PV + +PGCP   +    ++  I
Sbjct: 124 PNPVDNVGLQYLKRKHGGFLGSDFRSKWGLPV-VNIPGCPTHPDWVTQILVAI 175


>gi|317486279|ref|ZP_07945111.1| hydrogenase small subunit [Bilophila wadsworthia 3_1_6]
 gi|316922449|gb|EFV43703.1| hydrogenase small subunit [Bilophila wadsworthia 3_1_6]
          Length = 316

 Score = 34.1 bits (77), Expect = 9.6,   Method: Composition-based stats.
 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)

Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
           PV I VPGCPP  + ++  + LL   ++R G 
Sbjct: 186 PV-INVPGCPPHPDWMVGTLALLLDAMKRKGT 216


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.313    0.148    0.465 

Lambda     K      H
   0.267   0.0454    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,709,908,831
Number of Sequences: 14124377
Number of extensions: 165345310
Number of successful extensions: 471686
Number of sequences better than 10.0: 2730
Number of HSP's better than 10.0 without gapping: 4934
Number of HSP's successfully gapped in prelim test: 235
Number of HSP's that attempted gapping in prelim test: 463219
Number of HSP's gapped (non-prelim): 5256
length of query: 185
length of database: 4,842,793,630
effective HSP length: 130
effective length of query: 55
effective length of database: 3,006,624,620
effective search space: 165364354100
effective search space used: 165364354100
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (20.8 bits)
S2: 77 (34.1 bits)