BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254780853|ref|YP_003065266.1| NADH dehydrogenase subunit B [Candidatus Liberibacter asiaticus str. psy62] (185 letters) Database: nr 14,124,377 sequences; 4,842,793,630 total letters Searching..................................................done Results from round 1 >gi|254780853|ref|YP_003065266.1| NADH dehydrogenase subunit B [Candidatus Liberibacter asiaticus str. psy62] gi|254040530|gb|ACT57326.1| NADH dehydrogenase subunit B [Candidatus Liberibacter asiaticus str. psy62] Length = 185 Score = 385 bits (989), Expect = e-105, Method: Compositional matrix adjust. Identities = 185/185 (100%), Positives = 185/185 (100%) Query: 1 MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTF 60 MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTF Sbjct: 1 MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTF 60 Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP Sbjct: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV Sbjct: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 Query: 181 GNVKC 185 GNVKC Sbjct: 181 GNVKC 185 >gi|315122725|ref|YP_004063214.1| NADH dehydrogenase subunit B [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313496127|gb|ADR52726.1| NADH dehydrogenase subunit B [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 185 Score = 336 bits (862), Expect = 8e-91, Method: Compositional matrix adjust. Identities = 158/184 (85%), Positives = 168/184 (91%) Query: 1 MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTF 60 MGLT ++KI+ SS SLEK DF +E+ +KGFLV +DQLVTWARTGSLMWMTF Sbjct: 1 MGLTKFDRKIVVDHSSFSLEKAGMDFPSTDTELMNKGFLVAPIDQLVTWARTGSLMWMTF 60 Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP Sbjct: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD+YVPGCPPTAEALIYGILLLQKKIRR+ Sbjct: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALIYGILLLQKKIRRI 180 Query: 181 GNVK 184 GN+K Sbjct: 181 GNIK 184 >gi|300023456|ref|YP_003756067.1| NADH-quinone oxidoreductase subunit beta [Hyphomicrobium denitrificans ATCC 51888] gi|299525277|gb|ADJ23746.1| NADH-quinone oxidoreductase, B subunit [Hyphomicrobium denitrificans ATCC 51888] Length = 198 Score = 308 bits (788), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 141/174 (81%), Positives = 158/174 (90%) Query: 11 ISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMM 70 +SG ++ + D F+ IS+E+ KGFLVT+VD L+ WARTGSLMWMTFGLACCAVEMM Sbjct: 24 VSGAATSIIRPDDQFFTGISNELADKGFLVTTVDDLINWARTGSLMWMTFGLACCAVEMM 83 Query: 71 QASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCA 130 QASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCA Sbjct: 84 QASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCA 143 Query: 131 NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 NGGGYYHYSY+VVRGCDR+VPVD+YVPGCPPTAEAL+YGILLLQ+KIRR G ++ Sbjct: 144 NGGGYYHYSYAVVRGCDRVVPVDVYVPGCPPTAEALVYGILLLQRKIRRTGTIE 197 >gi|327188488|gb|EGE55702.1| NADH dehydrogenase subunit B [Rhizobium etli CNPAF512] Length = 201 Score = 306 bits (784), Expect = 9e-82, Method: Compositional matrix adjust. Identities = 145/193 (75%), Positives = 164/193 (84%), Gaps = 9/193 (4%) Query: 1 MGLTTV-NQKIISGQSSCSLEKV--------DADFSRISSEITHKGFLVTSVDQLVTWAR 51 MG+T V NQ +++ Q ++ DA F I++E+ KGFLVTS D+L+ WAR Sbjct: 8 MGVTPVSNQPLVAQQPKGIIDPSTGKPIGSNDAFFGEINNELADKGFLVTSTDELINWAR 67 Query: 52 TGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALR 111 TGSLMWMTFGLACCAVEMMQ SMPRYD+ERFGFAPRASPRQSDVMIVAGTLTNKMA ALR Sbjct: 68 TGSLMWMTFGLACCAVEMMQLSMPRYDVERFGFAPRASPRQSDVMIVAGTLTNKMAPALR 127 Query: 112 RVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171 +VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR+VP+DIYVPGCPPTAEAL+YG+L Sbjct: 128 KVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRVVPIDIYVPGCPPTAEALLYGVL 187 Query: 172 LLQKKIRRVGNVK 184 LLQKKIRR G ++ Sbjct: 188 LLQKKIRRTGTIE 200 >gi|86357237|ref|YP_469129.1| NADH dehydrogenase subunit B [Rhizobium etli CFN 42] gi|218673424|ref|ZP_03523093.1| NADH dehydrogenase subunit B [Rhizobium etli GR56] gi|123512314|sp|Q2K9T4|NUOB1_RHIEC RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName: Full=NADH dehydrogenase I subunit B 1; AltName: Full=NDH-1 subunit B 1 gi|86281339|gb|ABC90402.1| NADH-ubiquinone oxidoreductase chain B protein [Rhizobium etli CFN 42] Length = 194 Score = 306 bits (783), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 145/193 (75%), Positives = 164/193 (84%), Gaps = 9/193 (4%) Query: 1 MGLTTV-NQKIISGQSSCSLEKV--------DADFSRISSEITHKGFLVTSVDQLVTWAR 51 MG+T V NQ +++ Q ++ DA F I++E+ KGFLVTS D+L+ WAR Sbjct: 1 MGVTPVSNQPLVAQQPKGIIDPSTGKPIGSNDAFFGEINNELADKGFLVTSTDELINWAR 60 Query: 52 TGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALR 111 TGSLMWMTFGLACCAVEMMQ SMPRYD+ERFGFAPRASPRQSDVMIVAGTLTNKMA ALR Sbjct: 61 TGSLMWMTFGLACCAVEMMQLSMPRYDVERFGFAPRASPRQSDVMIVAGTLTNKMAPALR 120 Query: 112 RVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171 +VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR+VP+DIYVPGCPPTAEAL+YG+L Sbjct: 121 KVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRVVPIDIYVPGCPPTAEALLYGVL 180 Query: 172 LLQKKIRRVGNVK 184 LLQKKIRR G ++ Sbjct: 181 LLQKKIRRTGTIE 193 >gi|153009751|ref|YP_001370966.1| NADH dehydrogenase subunit B [Ochrobactrum anthropi ATCC 49188] gi|218527999|sp|A6X1N3|NUOB_OCHA4 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|151561639|gb|ABS15137.1| NADH-quinone oxidoreductase, B subunit [Ochrobactrum anthropi ATCC 49188] Length = 193 Score = 306 bits (783), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 145/192 (75%), Positives = 162/192 (84%), Gaps = 8/192 (4%) Query: 1 MGLTTVNQKIISGQSSCSLE--------KVDADFSRISSEITHKGFLVTSVDQLVTWART 52 MGLTT N +++ Q L+ DA F+ ++SE++ KGF+VTS D L+TWART Sbjct: 1 MGLTTANTTLVAPQPKGILDPRTGKPVGSDDAFFNDLNSELSDKGFIVTSADALITWART 60 Query: 53 GSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRR 112 GSLMWMTFGLACCAVEMM SMPRYD ERFG APRASPRQSDVMIVAGTLTNKMA ALR+ Sbjct: 61 GSLMWMTFGLACCAVEMMHISMPRYDAERFGIAPRASPRQSDVMIVAGTLTNKMAPALRK 120 Query: 113 VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILL 172 VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR+VPVDIYVPGCPPTAEAL+YGIL+ Sbjct: 121 VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRVVPVDIYVPGCPPTAEALLYGILM 180 Query: 173 LQKKIRRVGNVK 184 LQKKIRR G ++ Sbjct: 181 LQKKIRRTGTIE 192 >gi|150396112|ref|YP_001326579.1| NADH dehydrogenase subunit B [Sinorhizobium medicae WSM419] gi|238065217|sp|A6U7W4|NUOB_SINMW RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|150027627|gb|ABR59744.1| NADH-quinone oxidoreductase, B subunit [Sinorhizobium medicae WSM419] Length = 192 Score = 306 bits (783), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 140/162 (86%), Positives = 151/162 (93%) Query: 23 DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82 DA F I++E+ KGFLVTS D+L+TWARTGSLMWMTFGLACCAVEMMQ SMPRYD ERF Sbjct: 30 DAFFGEINNELADKGFLVTSTDELITWARTGSLMWMTFGLACCAVEMMQMSMPRYDAERF 89 Query: 83 GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142 GFAPRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSV Sbjct: 90 GFAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSV 149 Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 VRGCDR+VPVDIYVPGCPPTAEAL+YG+LLLQKKIRR G ++ Sbjct: 150 VRGCDRVVPVDIYVPGCPPTAEALLYGVLLLQKKIRRTGTIE 191 >gi|190891286|ref|YP_001977828.1| NADH-ubiquinone oxidoreductase, chain B [Rhizobium etli CIAT 652] gi|238065013|sp|B3PVZ8|NUOB1_RHIE6 RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName: Full=NADH dehydrogenase I subunit B 1; AltName: Full=NDH-1 subunit B 1 gi|190696565|gb|ACE90650.1| NADH-ubiquinone oxidoreductase protein, chain B [Rhizobium etli CIAT 652] Length = 194 Score = 305 bits (781), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 144/193 (74%), Positives = 162/193 (83%), Gaps = 9/193 (4%) Query: 1 MGLTTVNQK---------IISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWAR 51 MG+T V+ + II + + DA F I++E+ KGFLVTS D+L+ WAR Sbjct: 1 MGVTPVSNEPLVAQQPKGIIDPSTGKPIGSNDAFFGEINNELADKGFLVTSTDELINWAR 60 Query: 52 TGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALR 111 TGSLMWMTFGLACCAVEMMQ SMPRYD+ERFGFAPRASPRQSDVMIVAGTLTNKMA ALR Sbjct: 61 TGSLMWMTFGLACCAVEMMQLSMPRYDVERFGFAPRASPRQSDVMIVAGTLTNKMAPALR 120 Query: 112 RVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171 +VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR+VP+DIYVPGCPPTAEAL+YG+L Sbjct: 121 KVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRVVPIDIYVPGCPPTAEALLYGVL 180 Query: 172 LLQKKIRRVGNVK 184 LLQKKIRR G ++ Sbjct: 181 LLQKKIRRTGTIE 193 >gi|209548863|ref|YP_002280780.1| NADH dehydrogenase subunit B [Rhizobium leguminosarum bv. trifolii WSM2304] gi|238065201|sp|B5ZYL3|NUOB_RHILW RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|209534619|gb|ACI54554.1| NADH-quinone oxidoreductase, B subunit [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 194 Score = 305 bits (781), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 141/177 (79%), Positives = 156/177 (88%) Query: 8 QKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAV 67 + II + + DA F I++E+ KGFLVTS D+L+ WARTGSLMWMTFGLACCAV Sbjct: 17 KGIIDPSTGKPIGSNDAFFGEINNELADKGFLVTSTDELINWARTGSLMWMTFGLACCAV 76 Query: 68 EMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMG 127 EMMQ SMPRYD+ERFGFAPRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMG Sbjct: 77 EMMQLSMPRYDVERFGFAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMG 136 Query: 128 SCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 SCANGGGYYHYSYSVVRGCDRIVP+DIYVPGCPPTAEAL+YG+LLLQKKIRR G ++ Sbjct: 137 SCANGGGYYHYSYSVVRGCDRIVPIDIYVPGCPPTAEALLYGVLLLQKKIRRTGTIE 193 >gi|118590038|ref|ZP_01547442.1| NADH dehydrogenase subunit B [Stappia aggregata IAM 12614] gi|118437535|gb|EAV44172.1| NADH dehydrogenase subunit B [Stappia aggregata IAM 12614] Length = 192 Score = 305 bits (780), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 145/191 (75%), Positives = 159/191 (83%), Gaps = 7/191 (3%) Query: 1 MGLTTVN-------QKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTG 53 MGLTT Q II + + DA F +++E+ KGFLVTS D L+ WARTG Sbjct: 1 MGLTTTEPLVAPQPQGIIDPNTGKPVGADDAFFLEVNNELADKGFLVTSTDNLIQWARTG 60 Query: 54 SLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRV 113 SLMWMTFGLACCAVEMMQ SMPRYD ERFGFAPRASPRQSDVMIVAGTLTNKMA ALR+V Sbjct: 61 SLMWMTFGLACCAVEMMQMSMPRYDAERFGFAPRASPRQSDVMIVAGTLTNKMAPALRKV 120 Query: 114 YDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLL 173 YDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR+VPVDIYVPGCPPTAEAL+YG+L+L Sbjct: 121 YDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRVVPVDIYVPGCPPTAEALLYGVLML 180 Query: 174 QKKIRRVGNVK 184 QKKIRR G ++ Sbjct: 181 QKKIRRTGTIE 191 >gi|239831687|ref|ZP_04680016.1| NADH-quinone oxidoreductase, B subunit [Ochrobactrum intermedium LMG 3301] gi|239823954|gb|EEQ95522.1| NADH-quinone oxidoreductase, B subunit [Ochrobactrum intermedium LMG 3301] Length = 193 Score = 305 bits (780), Expect = 3e-81, Method: Compositional matrix adjust. Identities = 144/192 (75%), Positives = 162/192 (84%), Gaps = 8/192 (4%) Query: 1 MGLTTVNQKIISGQSSCSLE--------KVDADFSRISSEITHKGFLVTSVDQLVTWART 52 MGLT+ N +++ Q L+ DA F+ ++SE++ KGF+VTS D L+TWART Sbjct: 1 MGLTSANTTLVAPQPKGILDPRTGKPVGSDDAFFNDLNSELSDKGFIVTSADALITWART 60 Query: 53 GSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRR 112 GSLMWMTFGLACCAVEMM SMPRYD ERFG APRASPRQSDVMIVAGTLTNKMA ALR+ Sbjct: 61 GSLMWMTFGLACCAVEMMHISMPRYDAERFGIAPRASPRQSDVMIVAGTLTNKMAPALRK 120 Query: 113 VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILL 172 VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR+VPVDIYVPGCPPTAEAL+YGIL+ Sbjct: 121 VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRVVPVDIYVPGCPPTAEALLYGILM 180 Query: 173 LQKKIRRVGNVK 184 LQKKIRR G ++ Sbjct: 181 LQKKIRRTGTIE 192 >gi|227821618|ref|YP_002825588.1| NADH dehydrogenase subunit B [Sinorhizobium fredii NGR234] gi|227340617|gb|ACP24835.1| NADH dehydrogenase I chain B [Sinorhizobium fredii NGR234] Length = 192 Score = 304 bits (779), Expect = 3e-81, Method: Compositional matrix adjust. Identities = 141/177 (79%), Positives = 155/177 (87%) Query: 8 QKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAV 67 + II + + DA F I++E+ KGFLVTS D+L+ WARTGSLMWMTFGLACCAV Sbjct: 15 KGIIDPATGKPIGSNDAFFGEINNELADKGFLVTSTDELINWARTGSLMWMTFGLACCAV 74 Query: 68 EMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMG 127 EMMQ SMPRYD ERFGFAPRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMG Sbjct: 75 EMMQMSMPRYDAERFGFAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMG 134 Query: 128 SCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 SCANGGGYYHYSYSVVRGCDR+VPVDIYVPGCPPTAEAL+YG+LLLQKKIRR G ++ Sbjct: 135 SCANGGGYYHYSYSVVRGCDRVVPVDIYVPGCPPTAEALLYGVLLLQKKIRRTGTIE 191 >gi|15965018|ref|NP_385371.1| NADH dehydrogenase subunit B [Sinorhizobium meliloti 1021] gi|307301090|ref|ZP_07580859.1| NADH-quinone oxidoreductase, B subunit [Sinorhizobium meliloti BL225C] gi|307317824|ref|ZP_07597262.1| NADH-quinone oxidoreductase, B subunit [Sinorhizobium meliloti AK83] gi|7387950|sp|O68853|NUOB1_RHIME RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName: Full=NADH dehydrogenase I subunit B 1; AltName: Full=NDH-1 subunit B 1 gi|5650735|emb|CAB51621.1| nuoB1 [Sinorhizobium meliloti] gi|15074197|emb|CAC45844.1| NADH-ubiqionone oxidoreductase subunit K transmembrane protein [Sinorhizobium meliloti 1021] gi|306896586|gb|EFN27334.1| NADH-quinone oxidoreductase, B subunit [Sinorhizobium meliloti AK83] gi|306904045|gb|EFN34631.1| NADH-quinone oxidoreductase, B subunit [Sinorhizobium meliloti BL225C] Length = 192 Score = 304 bits (778), Expect = 4e-81, Method: Compositional matrix adjust. Identities = 139/162 (85%), Positives = 150/162 (92%) Query: 23 DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82 DA F I++E+ KGFLVTS D+L+ WARTGSLMWMTFGLACCAVEMMQ SMPRYD ERF Sbjct: 30 DAFFGEINNELADKGFLVTSTDELINWARTGSLMWMTFGLACCAVEMMQMSMPRYDAERF 89 Query: 83 GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142 GFAPRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSV Sbjct: 90 GFAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSV 149 Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 VRGCDR+VPVDIYVPGCPPTAEAL+YG+LLLQKKIRR G ++ Sbjct: 150 VRGCDRVVPVDIYVPGCPPTAEALLYGVLLLQKKIRRTGTIE 191 >gi|217979050|ref|YP_002363197.1| NADH-quinone oxidoreductase, B subunit [Methylocella silvestris BL2] gi|238065173|sp|B8EIL8|NUOB_METSB RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|217504426|gb|ACK51835.1| NADH-quinone oxidoreductase, B subunit [Methylocella silvestris BL2] Length = 187 Score = 304 bits (778), Expect = 4e-81, Method: Compositional matrix adjust. Identities = 144/186 (77%), Positives = 160/186 (86%), Gaps = 2/186 (1%) Query: 1 MGLTTVNQK--IISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWM 58 MGLT Q+ +I+ + L D F I+ ++ KGFLVTS D+L+ WARTGSLMWM Sbjct: 1 MGLTPAPQEGLVINPATDRPLAANDPYFLSINDKLADKGFLVTSTDELINWARTGSLMWM 60 Query: 59 TFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMP 118 TFGLACCAVEMMQASMPRYD+ERFGFAPR SPRQSDVMIVAGTLTNKMA ALR+VYDQMP Sbjct: 61 TFGLACCAVEMMQASMPRYDVERFGFAPRGSPRQSDVMIVAGTLTNKMAPALRKVYDQMP 120 Query: 119 EPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 EPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP+AEAL+YGILLLQ+KIR Sbjct: 121 EPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPSAEALLYGILLLQRKIR 180 Query: 179 RVGNVK 184 R G ++ Sbjct: 181 RTGTIE 186 >gi|222085576|ref|YP_002544106.1| NADH-ubiquinone oxidoreductase chain B protein [Agrobacterium radiobacter K84] gi|238065070|sp|B9JD43|NUOB_AGRRK RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|221723024|gb|ACM26180.1| NADH-ubiquinone oxidoreductase chain B protein [Agrobacterium radiobacter K84] Length = 193 Score = 303 bits (777), Expect = 5e-81, Method: Compositional matrix adjust. Identities = 141/192 (73%), Positives = 160/192 (83%), Gaps = 8/192 (4%) Query: 1 MGLTTVNQKIISGQSSCSLEKV--------DADFSRISSEITHKGFLVTSVDQLVTWART 52 MG+ N +++ Q ++ D F I++E+ KGFLVTS D+L+ WART Sbjct: 1 MGVAQSNTTLVAPQPKGIIDPATGKPVGSNDPFFGEINNELADKGFLVTSTDELINWART 60 Query: 53 GSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRR 112 GSLMWMTFGLACCAVEMMQ SMPRYD+ERFGFAPRASPRQSDVMIVAGTLTNKMA ALR+ Sbjct: 61 GSLMWMTFGLACCAVEMMQVSMPRYDVERFGFAPRASPRQSDVMIVAGTLTNKMAPALRK 120 Query: 113 VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILL 172 VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP+DIY+PGCPPTAEAL+YG+LL Sbjct: 121 VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPIDIYIPGCPPTAEALLYGVLL 180 Query: 173 LQKKIRRVGNVK 184 LQKKIRR G ++ Sbjct: 181 LQKKIRRTGTIE 192 >gi|116251467|ref|YP_767305.1| NADH dehydrogenase subunit B [Rhizobium leguminosarum bv. viciae 3841] gi|238065200|sp|Q1MIL4|NUOB_RHIL3 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|115256115|emb|CAK07196.1| putative NADH-quinone oxidoreductase subunit B [Rhizobium leguminosarum bv. viciae 3841] Length = 194 Score = 303 bits (776), Expect = 7e-81, Method: Compositional matrix adjust. Identities = 140/177 (79%), Positives = 155/177 (87%) Query: 8 QKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAV 67 + II + + D F I++E+ KGFLVTS D+L+ WARTGSLMWMTFGLACCAV Sbjct: 17 KGIIDPSTGKPIGSNDPFFGEINNELADKGFLVTSTDELINWARTGSLMWMTFGLACCAV 76 Query: 68 EMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMG 127 EMMQ SMPRYD+ERFGFAPRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMG Sbjct: 77 EMMQLSMPRYDVERFGFAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMG 136 Query: 128 SCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 SCANGGGYYHYSYSVVRGCDRIVP+DIYVPGCPPTAEAL+YG+LLLQKKIRR G ++ Sbjct: 137 SCANGGGYYHYSYSVVRGCDRIVPIDIYVPGCPPTAEALLYGVLLLQKKIRRTGTIE 193 >gi|218457950|ref|ZP_03498041.1| NADH dehydrogenase subunit B [Rhizobium etli Kim 5] Length = 185 Score = 303 bits (776), Expect = 8e-81, Method: Compositional matrix adjust. Identities = 140/175 (80%), Positives = 155/175 (88%) Query: 7 NQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCA 66 ++ II + + DA F I++E+ KGFLVTS D+L+ WARTGSLMWMTFGLACCA Sbjct: 11 SKGIIDPSTGKPIGSNDAFFGEINNELADKGFLVTSTDELINWARTGSLMWMTFGLACCA 70 Query: 67 VEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISM 126 VEMMQ SMPRYD+ERFGFAPRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISM Sbjct: 71 VEMMQLSMPRYDVERFGFAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISM 130 Query: 127 GSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181 GSCANGGGYYHYSYSVVRGCDR+VP+DIYVPGCPPTAEAL+YG+LLLQKKIRR G Sbjct: 131 GSCANGGGYYHYSYSVVRGCDRVVPIDIYVPGCPPTAEALLYGVLLLQKKIRRTG 185 >gi|260545498|ref|ZP_05821239.1| NADH-quinone oxidoreductase subunit C/D [Brucella abortus NCTC 8038] gi|297248157|ref|ZP_06931875.1| NADH dehydrogenase I subunit B [Brucella abortus bv. 5 str. B3196] gi|260096905|gb|EEW80780.1| NADH-quinone oxidoreductase subunit C/D [Brucella abortus NCTC 8038] gi|297175326|gb|EFH34673.1| NADH dehydrogenase I subunit B [Brucella abortus bv. 5 str. B3196] Length = 200 Score = 303 bits (776), Expect = 8e-81, Method: Compositional matrix adjust. Identities = 144/192 (75%), Positives = 160/192 (83%), Gaps = 8/192 (4%) Query: 1 MGLTTVNQKIISGQSSCSLE--------KVDADFSRISSEITHKGFLVTSVDQLVTWART 52 MGLT N +++ Q L+ DA F+ ++ E++ KGF+VTS D L+TWART Sbjct: 8 MGLTGTNTTLVAPQPKGILDPRTGKTVGSDDAFFNDLNGELSDKGFIVTSADALITWART 67 Query: 53 GSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRR 112 GSLMWMTFGLACCAVEMM SMPRYD ERFG APRASPRQSDVMIVAGTLTNKMA ALR+ Sbjct: 68 GSLMWMTFGLACCAVEMMHISMPRYDAERFGIAPRASPRQSDVMIVAGTLTNKMAPALRK 127 Query: 113 VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILL 172 VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR+VPVDIYVPGCPPTAEAL+YGILL Sbjct: 128 VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRVVPVDIYVPGCPPTAEALLYGILL 187 Query: 173 LQKKIRRVGNVK 184 LQKKIRR G ++ Sbjct: 188 LQKKIRRTGTIE 199 >gi|241204087|ref|YP_002975183.1| NADH dehydrogenase subunit B [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240857977|gb|ACS55644.1| NADH-quinone oxidoreductase, B subunit [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 194 Score = 303 bits (775), Expect = 8e-81, Method: Compositional matrix adjust. Identities = 144/193 (74%), Positives = 162/193 (83%), Gaps = 9/193 (4%) Query: 1 MGLTTV-NQKIISGQSSCSLEKV--------DADFSRISSEITHKGFLVTSVDQLVTWAR 51 MG+ V NQ +++ Q ++ D F I++E+ KGFLVTS D+L+ WAR Sbjct: 1 MGVAPVSNQPLVAQQPKGIIDPSTGKPVGSNDPFFGEINNELADKGFLVTSTDELINWAR 60 Query: 52 TGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALR 111 TGSLMWMTFGLACCAVEMMQ SMPRYD+ERFGFAPRASPRQSDVMIVAGTLTNKMA ALR Sbjct: 61 TGSLMWMTFGLACCAVEMMQLSMPRYDVERFGFAPRASPRQSDVMIVAGTLTNKMAPALR 120 Query: 112 RVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171 +VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP+DIYVPGCPPTAEAL+YG+L Sbjct: 121 KVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPIDIYVPGCPPTAEALLYGVL 180 Query: 172 LLQKKIRRVGNVK 184 LLQKKIRR G ++ Sbjct: 181 LLQKKIRRTGTIE 193 >gi|17987440|ref|NP_540074.1| NADH dehydrogenase subunit B [Brucella melitensis bv. 1 str. 16M] gi|260563836|ref|ZP_05834322.1| NADH-quinone oxidoreductase subunit C/D [Brucella melitensis bv. 1 str. 16M] gi|260566633|ref|ZP_05837103.1| NADH-quinone oxidoreductase subunit C/D [Brucella suis bv. 4 str. 40] gi|17983133|gb|AAL52338.1| NADH-quinone oxidoreductase chain b [Brucella melitensis bv. 1 str. 16M] gi|260153852|gb|EEW88944.1| NADH-quinone oxidoreductase subunit C/D [Brucella melitensis bv. 1 str. 16M] gi|260156151|gb|EEW91231.1| NADH-quinone oxidoreductase subunit C/D [Brucella suis bv. 4 str. 40] Length = 200 Score = 303 bits (775), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 144/192 (75%), Positives = 160/192 (83%), Gaps = 8/192 (4%) Query: 1 MGLTTVNQKIISGQSSCSLE--------KVDADFSRISSEITHKGFLVTSVDQLVTWART 52 MGLT N +++ Q L+ DA F+ ++ E++ KGF+VTS D L+TWART Sbjct: 8 MGLTGTNTTLVAPQPKGILDPRTGKPVGSDDAFFNDLNGELSDKGFIVTSADALITWART 67 Query: 53 GSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRR 112 GSLMWMTFGLACCAVEMM SMPRYD ERFG APRASPRQSDVMIVAGTLTNKMA ALR+ Sbjct: 68 GSLMWMTFGLACCAVEMMHISMPRYDAERFGIAPRASPRQSDVMIVAGTLTNKMAPALRK 127 Query: 113 VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILL 172 VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR+VPVDIYVPGCPPTAEAL+YGILL Sbjct: 128 VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRVVPVDIYVPGCPPTAEALLYGILL 187 Query: 173 LQKKIRRVGNVK 184 LQKKIRR G ++ Sbjct: 188 LQKKIRRTGTIE 199 >gi|298291846|ref|YP_003693785.1| NADH-quinone oxidoreductase subunit beta [Starkeya novella DSM 506] gi|296928357|gb|ADH89166.1| NADH-quinone oxidoreductase, B subunit [Starkeya novella DSM 506] Length = 192 Score = 302 bits (774), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 138/175 (78%), Positives = 154/175 (88%) Query: 10 IISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEM 69 II + + D F +++E+ KGFLVT+ D+L+ WARTGSLMWMTFGLACCAVEM Sbjct: 17 IIDPNTGKPVGTTDPFFVEVNAELADKGFLVTATDELINWARTGSLMWMTFGLACCAVEM 76 Query: 70 MQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSC 129 MQ SMPRYD+ERFGFAPRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSC Sbjct: 77 MQTSMPRYDVERFGFAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSC 136 Query: 130 ANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 ANGGGYYHYSYSVVRGCDRIVPVDIY+PGCPPTAEAL+YG+LLLQKKIRR G ++ Sbjct: 137 ANGGGYYHYSYSVVRGCDRIVPVDIYIPGCPPTAEALLYGVLLLQKKIRRTGTIE 191 >gi|62289752|ref|YP_221545.1| NADH dehydrogenase subunit B [Brucella abortus bv. 1 str. 9-941] gi|82699680|ref|YP_414254.1| NADH dehydrogenase subunit B [Brucella melitensis biovar Abortus 2308] gi|189023997|ref|YP_001934765.1| NADH dehydrogenase subunit B [Brucella abortus S19] gi|237815239|ref|ZP_04594237.1| NADH-quinone oxidoreductase, B subunit [Brucella abortus str. 2308 A] gi|254689059|ref|ZP_05152313.1| NADH dehydrogenase subunit B [Brucella abortus bv. 6 str. 870] gi|254697193|ref|ZP_05159021.1| NADH dehydrogenase subunit B [Brucella abortus bv. 2 str. 86/8/59] gi|254730089|ref|ZP_05188667.1| NADH dehydrogenase subunit B [Brucella abortus bv. 4 str. 292] gi|256257308|ref|ZP_05462844.1| NADH dehydrogenase subunit B [Brucella abortus bv. 9 str. C68] gi|260754557|ref|ZP_05866905.1| NADH-quinone oxidoreductase [Brucella abortus bv. 6 str. 870] gi|260757778|ref|ZP_05870126.1| NADH-quinone oxidoreductase [Brucella abortus bv. 4 str. 292] gi|260761603|ref|ZP_05873946.1| NADH-quinone oxidoreductase [Brucella abortus bv. 2 str. 86/8/59] gi|260883584|ref|ZP_05895198.1| NADH-quinone oxidoreductase subunit B [Brucella abortus bv. 9 str. C68] gi|75496975|sp|Q57DV0|NUOB_BRUAB RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|123546615|sp|Q2YNC8|NUOB_BRUA2 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|218527975|sp|B2S544|NUOB_BRUA1 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|62195884|gb|AAX74184.1| NuoB, NADH dehydrogenase I, B subunit [Brucella abortus bv. 1 str. 9-941] gi|82615781|emb|CAJ10779.1| NADH ubiquinone oxidoreductase domain, 20 kDa subunit:NADH dehydrogenase (ubiquinone), 20 kDa subunit [Brucella melitensis biovar Abortus 2308] gi|189019569|gb|ACD72291.1| NADH dehydrogenase beta subunit [Brucella abortus S19] gi|237790076|gb|EEP64286.1| NADH-quinone oxidoreductase, B subunit [Brucella abortus str. 2308 A] gi|260668096|gb|EEX55036.1| NADH-quinone oxidoreductase [Brucella abortus bv. 4 str. 292] gi|260672035|gb|EEX58856.1| NADH-quinone oxidoreductase [Brucella abortus bv. 2 str. 86/8/59] gi|260674665|gb|EEX61486.1| NADH-quinone oxidoreductase [Brucella abortus bv. 6 str. 870] gi|260873112|gb|EEX80181.1| NADH-quinone oxidoreductase subunit B [Brucella abortus bv. 9 str. C68] Length = 193 Score = 302 bits (774), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 144/192 (75%), Positives = 160/192 (83%), Gaps = 8/192 (4%) Query: 1 MGLTTVNQKIISGQSSCSLE--------KVDADFSRISSEITHKGFLVTSVDQLVTWART 52 MGLT N +++ Q L+ DA F+ ++ E++ KGF+VTS D L+TWART Sbjct: 1 MGLTGTNTTLVAPQPKGILDPRTGKTVGSDDAFFNDLNGELSDKGFIVTSADALITWART 60 Query: 53 GSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRR 112 GSLMWMTFGLACCAVEMM SMPRYD ERFG APRASPRQSDVMIVAGTLTNKMA ALR+ Sbjct: 61 GSLMWMTFGLACCAVEMMHISMPRYDAERFGIAPRASPRQSDVMIVAGTLTNKMAPALRK 120 Query: 113 VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILL 172 VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR+VPVDIYVPGCPPTAEAL+YGILL Sbjct: 121 VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRVVPVDIYVPGCPPTAEALLYGILL 180 Query: 173 LQKKIRRVGNVK 184 LQKKIRR G ++ Sbjct: 181 LQKKIRRTGTIE 192 >gi|23501690|ref|NP_697817.1| NADH dehydrogenase subunit B [Brucella suis 1330] gi|148559527|ref|YP_001258781.1| NADH dehydrogenase subunit B [Brucella ovis ATCC 25840] gi|161618767|ref|YP_001592654.1| NADH dehydrogenase subunit B [Brucella canis ATCC 23365] gi|163843076|ref|YP_001627480.1| NADH dehydrogenase subunit B [Brucella suis ATCC 23445] gi|225627300|ref|ZP_03785337.1| NADH-quinone oxidoreductase, B subunit [Brucella ceti str. Cudo] gi|225852319|ref|YP_002732552.1| NADH dehydrogenase subunit B [Brucella melitensis ATCC 23457] gi|254693541|ref|ZP_05155369.1| NADH dehydrogenase subunit B [Brucella abortus bv. 3 str. Tulya] gi|254701571|ref|ZP_05163399.1| NADH dehydrogenase subunit B [Brucella suis bv. 5 str. 513] gi|254704118|ref|ZP_05165946.1| NADH dehydrogenase subunit B [Brucella suis bv. 3 str. 686] gi|254706982|ref|ZP_05168810.1| NADH dehydrogenase subunit B [Brucella pinnipedialis M163/99/10] gi|254709911|ref|ZP_05171722.1| NADH dehydrogenase subunit B [Brucella pinnipedialis B2/94] gi|254713912|ref|ZP_05175723.1| NADH dehydrogenase subunit B [Brucella ceti M644/93/1] gi|254717030|ref|ZP_05178841.1| NADH dehydrogenase subunit B [Brucella ceti M13/05/1] gi|254718912|ref|ZP_05180723.1| NADH dehydrogenase subunit B [Brucella sp. 83/13] gi|256031404|ref|ZP_05445018.1| NADH dehydrogenase subunit B [Brucella pinnipedialis M292/94/1] gi|256044482|ref|ZP_05447386.1| NADH dehydrogenase subunit B [Brucella melitensis bv. 1 str. Rev.1] gi|256060915|ref|ZP_05451073.1| NADH dehydrogenase subunit B [Brucella neotomae 5K33] gi|256113333|ref|ZP_05454195.1| NADH dehydrogenase subunit B [Brucella melitensis bv. 3 str. Ether] gi|256159525|ref|ZP_05457293.1| NADH dehydrogenase subunit B [Brucella ceti M490/95/1] gi|256254812|ref|ZP_05460348.1| NADH dehydrogenase subunit B [Brucella ceti B1/94] gi|256264182|ref|ZP_05466714.1| NADH dehydrogenase beta subunit [Brucella melitensis bv. 2 str. 63/9] gi|256369235|ref|YP_003106743.1| NADH dehydrogenase beta subunit [Brucella microti CCM 4915] gi|260168538|ref|ZP_05755349.1| NADH dehydrogenase subunit B [Brucella sp. F5/99] gi|261213806|ref|ZP_05928087.1| NADH-quinone oxidoreductase [Brucella abortus bv. 3 str. Tulya] gi|261218837|ref|ZP_05933118.1| NADH-quinone oxidoreductase subunit B [Brucella ceti M13/05/1] gi|261221993|ref|ZP_05936274.1| NADH-quinone oxidoreductase subunit B [Brucella ceti B1/94] gi|261314445|ref|ZP_05953642.1| NADH-quinone oxidoreductase subunit B [Brucella pinnipedialis M163/99/10] gi|261317457|ref|ZP_05956654.1| NADH-quinone oxidoreductase subunit B [Brucella pinnipedialis B2/94] gi|261321664|ref|ZP_05960861.1| NADH-quinone oxidoreductase subunit B [Brucella ceti M644/93/1] gi|261324915|ref|ZP_05964112.1| NADH-quinone oxidoreductase subunit B [Brucella neotomae 5K33] gi|261752124|ref|ZP_05995833.1| NADH-quinone oxidoreductase subunit B [Brucella suis bv. 5 str. 513] gi|261754784|ref|ZP_05998493.1| NADH-quinone oxidoreductase subunit B [Brucella suis bv. 3 str. 686] gi|261758011|ref|ZP_06001720.1| NADH dehydrogenase subunit B [Brucella sp. F5/99] gi|265983899|ref|ZP_06096634.1| NADH-quinone oxidoreductase subunit B [Brucella sp. 83/13] gi|265988493|ref|ZP_06101050.1| NADH-quinone oxidoreductase subunit B [Brucella pinnipedialis M292/94/1] gi|265990906|ref|ZP_06103463.1| NADH-quinone oxidoreductase subunit B [Brucella melitensis bv. 1 str. Rev.1] gi|265994743|ref|ZP_06107300.1| NADH-quinone oxidoreductase subunit B [Brucella melitensis bv. 3 str. Ether] gi|265997957|ref|ZP_06110514.1| NADH-quinone oxidoreductase subunit B [Brucella ceti M490/95/1] gi|294852160|ref|ZP_06792833.1| NADH-quinone oxidoreductase subunit B [Brucella sp. NVSL 07-0026] gi|306838240|ref|ZP_07471092.1| NADH-quinone oxidoreductase, B subunit [Brucella sp. NF 2653] gi|306841959|ref|ZP_07474636.1| NADH-quinone oxidoreductase, B subunit [Brucella sp. BO2] gi|306843740|ref|ZP_07476339.1| NADH-quinone oxidoreductase, B subunit [Brucella sp. BO1] gi|81752805|sp|Q8G1B6|NUOB_BRUSU RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|218527976|sp|A9MAI0|NUOB_BRUC2 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|218527977|sp|A5VPY4|NUOB_BRUO2 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|218527978|sp|B0CLD0|NUOB_BRUSI RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|218528072|sp|Q8YGK1|NUOB_BRUME RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|254767790|sp|C0RIE0|NUOB_BRUMB RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|23347612|gb|AAN29732.1| NADH dehydrogenase I, B subunit [Brucella suis 1330] gi|148370784|gb|ABQ60763.1| NADH dehydrogenase I, B subunit [Brucella ovis ATCC 25840] gi|161335578|gb|ABX61883.1| NADH-quinone oxidoreductase, B subunit [Brucella canis ATCC 23365] gi|163673799|gb|ABY37910.1| NADH-quinone oxidoreductase, B subunit [Brucella suis ATCC 23445] gi|225617305|gb|EEH14350.1| NADH-quinone oxidoreductase, B subunit [Brucella ceti str. Cudo] gi|225640684|gb|ACO00598.1| NADH-quinone oxidoreductase, B subunit [Brucella melitensis ATCC 23457] gi|255999395|gb|ACU47794.1| NADH dehydrogenase beta subunit [Brucella microti CCM 4915] gi|260915413|gb|EEX82274.1| NADH-quinone oxidoreductase [Brucella abortus bv. 3 str. Tulya] gi|260920577|gb|EEX87230.1| NADH-quinone oxidoreductase subunit B [Brucella ceti B1/94] gi|260923926|gb|EEX90494.1| NADH-quinone oxidoreductase subunit B [Brucella ceti M13/05/1] gi|261294354|gb|EEX97850.1| NADH-quinone oxidoreductase subunit B [Brucella ceti M644/93/1] gi|261296680|gb|EEY00177.1| NADH-quinone oxidoreductase subunit B [Brucella pinnipedialis B2/94] gi|261300895|gb|EEY04392.1| NADH-quinone oxidoreductase subunit B [Brucella neotomae 5K33] gi|261303471|gb|EEY06968.1| NADH-quinone oxidoreductase subunit B [Brucella pinnipedialis M163/99/10] gi|261737995|gb|EEY25991.1| NADH dehydrogenase subunit B [Brucella sp. F5/99] gi|261741877|gb|EEY29803.1| NADH-quinone oxidoreductase subunit B [Brucella suis bv. 5 str. 513] gi|261744537|gb|EEY32463.1| NADH-quinone oxidoreductase subunit B [Brucella suis bv. 3 str. 686] gi|262552425|gb|EEZ08415.1| NADH-quinone oxidoreductase subunit B [Brucella ceti M490/95/1] gi|262765856|gb|EEZ11645.1| NADH-quinone oxidoreductase subunit B [Brucella melitensis bv. 3 str. Ether] gi|263001690|gb|EEZ14265.1| NADH-quinone oxidoreductase subunit B [Brucella melitensis bv. 1 str. Rev.1] gi|263094400|gb|EEZ18245.1| NADH dehydrogenase beta subunit [Brucella melitensis bv. 2 str. 63/9] gi|264660690|gb|EEZ30951.1| NADH-quinone oxidoreductase subunit B [Brucella pinnipedialis M292/94/1] gi|264662491|gb|EEZ32752.1| NADH-quinone oxidoreductase subunit B [Brucella sp. 83/13] gi|294820749|gb|EFG37748.1| NADH-quinone oxidoreductase subunit B [Brucella sp. NVSL 07-0026] gi|306275931|gb|EFM57644.1| NADH-quinone oxidoreductase, B subunit [Brucella sp. BO1] gi|306287950|gb|EFM59361.1| NADH-quinone oxidoreductase, B subunit [Brucella sp. BO2] gi|306406684|gb|EFM62911.1| NADH-quinone oxidoreductase, B subunit [Brucella sp. NF 2653] gi|326408826|gb|ADZ65891.1| NADH dehydrogenase subunit B [Brucella melitensis M28] Length = 193 Score = 302 bits (774), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 144/192 (75%), Positives = 160/192 (83%), Gaps = 8/192 (4%) Query: 1 MGLTTVNQKIISGQSSCSLE--------KVDADFSRISSEITHKGFLVTSVDQLVTWART 52 MGLT N +++ Q L+ DA F+ ++ E++ KGF+VTS D L+TWART Sbjct: 1 MGLTGTNTTLVAPQPKGILDPRTGKPVGSDDAFFNDLNGELSDKGFIVTSADALITWART 60 Query: 53 GSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRR 112 GSLMWMTFGLACCAVEMM SMPRYD ERFG APRASPRQSDVMIVAGTLTNKMA ALR+ Sbjct: 61 GSLMWMTFGLACCAVEMMHISMPRYDAERFGIAPRASPRQSDVMIVAGTLTNKMAPALRK 120 Query: 113 VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILL 172 VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR+VPVDIYVPGCPPTAEAL+YGILL Sbjct: 121 VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRVVPVDIYVPGCPPTAEALLYGILL 180 Query: 173 LQKKIRRVGNVK 184 LQKKIRR G ++ Sbjct: 181 LQKKIRRTGTIE 192 >gi|163759542|ref|ZP_02166627.1| NADH dehydrogenase beta subunit [Hoeflea phototrophica DFL-43] gi|162283139|gb|EDQ33425.1| NADH dehydrogenase beta subunit [Hoeflea phototrophica DFL-43] Length = 191 Score = 302 bits (773), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 138/177 (77%), Positives = 156/177 (88%) Query: 8 QKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAV 67 + II + + + DA F +++E+ KGFLVTS D+L+ W+RTGSLMWMTFGLACCAV Sbjct: 14 KGIIDPNTGKPVGQDDAFFGEVNNELADKGFLVTSTDELINWSRTGSLMWMTFGLACCAV 73 Query: 68 EMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMG 127 EMMQ SMPRYD ERFGFAPRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMG Sbjct: 74 EMMQMSMPRYDAERFGFAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMG 133 Query: 128 SCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 SCANGGGYYHYSYSVVRGCDR+VPVDIYVPGCPPTAEAL+YG+LLLQKK+RR G ++ Sbjct: 134 SCANGGGYYHYSYSVVRGCDRVVPVDIYVPGCPPTAEALLYGVLLLQKKMRRTGTIE 190 >gi|154248551|ref|YP_001419509.1| NADH-quinone oxidoreductase, B subunit [Xanthobacter autotrophicus Py2] gi|238065245|sp|A7IPA6|NUOB_XANP2 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|154162636|gb|ABS69852.1| NADH-quinone oxidoreductase, B subunit [Xanthobacter autotrophicus Py2] Length = 194 Score = 302 bits (773), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 138/177 (77%), Positives = 156/177 (88%) Query: 8 QKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAV 67 Q I+ + + D F I+SE+ KGF++T+ D L+TWARTGSLMWMTFGLACCAV Sbjct: 17 QGIVDPSTGRPVGADDPFFKEINSELADKGFILTTADDLITWARTGSLMWMTFGLACCAV 76 Query: 68 EMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMG 127 EMMQ SMPRYD+ERFGFAPRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMG Sbjct: 77 EMMQVSMPRYDVERFGFAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMG 136 Query: 128 SCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 SCANGGGYYH+SY+VVRGCDRIVPVDIYVPGCPPTAEAL+YG+LLLQKKIRR+G ++ Sbjct: 137 SCANGGGYYHFSYAVVRGCDRIVPVDIYVPGCPPTAEALLYGVLLLQKKIRRIGTIE 193 >gi|307942118|ref|ZP_07657469.1| NADH-quinone oxidoreductase subunit b 1 [Roseibium sp. TrichSKD4] gi|307774404|gb|EFO33614.1| NADH-quinone oxidoreductase subunit b 1 [Roseibium sp. TrichSKD4] Length = 193 Score = 301 bits (771), Expect = 3e-80, Method: Compositional matrix adjust. Identities = 143/192 (74%), Positives = 162/192 (84%), Gaps = 8/192 (4%) Query: 1 MGLTTVNQKIISGQSSCSLEK-----VDAD---FSRISSEITHKGFLVTSVDQLVTWART 52 MGLT ++ +I+ Q ++ V AD F ++ ++ KGFLVTS D L+ WART Sbjct: 1 MGLTQTSKPLIAEQPKGIIDPNTGKPVGADDPFFLEVNDQLADKGFLVTSTDNLIQWART 60 Query: 53 GSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRR 112 GSLMWMTFGLACCAVEMMQ SMPRYD+ERFGFAPRASPRQSDVMIVAGTLTNKMA ALR+ Sbjct: 61 GSLMWMTFGLACCAVEMMQMSMPRYDVERFGFAPRASPRQSDVMIVAGTLTNKMAPALRK 120 Query: 113 VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILL 172 VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR+VPVDIYVPGCPPTAEAL+YG+L+ Sbjct: 121 VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRVVPVDIYVPGCPPTAEALLYGVLM 180 Query: 173 LQKKIRRVGNVK 184 LQKKIRR G ++ Sbjct: 181 LQKKIRRTGTIE 192 >gi|254503578|ref|ZP_05115729.1| NADH-quinone oxidoreductase, B subunit subfamily [Labrenzia alexandrii DFL-11] gi|222439649|gb|EEE46328.1| NADH-quinone oxidoreductase, B subunit subfamily [Labrenzia alexandrii DFL-11] Length = 199 Score = 301 bits (771), Expect = 3e-80, Method: Compositional matrix adjust. Identities = 143/191 (74%), Positives = 157/191 (82%), Gaps = 7/191 (3%) Query: 1 MGLTTVN-------QKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTG 53 MGLTT + II + + D F ++ E+ KGFLVTS D L+ WARTG Sbjct: 8 MGLTTAKPLIAEQPKGIIDPNTGKPVGADDPFFLEVNDELADKGFLVTSTDNLIQWARTG 67 Query: 54 SLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRV 113 SLMWMTFGLACCAVEMMQ SMPRYD ERFGFAPRASPRQSDVMIVAGTLTNKMA ALR+V Sbjct: 68 SLMWMTFGLACCAVEMMQMSMPRYDAERFGFAPRASPRQSDVMIVAGTLTNKMAPALRKV 127 Query: 114 YDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLL 173 YDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR+VPVDIYVPGCPPTAEAL+YG+L+L Sbjct: 128 YDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRVVPVDIYVPGCPPTAEALLYGVLML 187 Query: 174 QKKIRRVGNVK 184 QKKIRR G ++ Sbjct: 188 QKKIRRTGTIE 198 >gi|158423292|ref|YP_001524584.1| NADH dehydrogenase subunit B [Azorhizobium caulinodans ORS 571] gi|218527974|sp|A8I3Y7|NUOB_AZOC5 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|158330181|dbj|BAF87666.1| NADH ubiqionone oxidoreductase chain B protein [Azorhizobium caulinodans ORS 571] Length = 192 Score = 301 bits (770), Expect = 4e-80, Method: Compositional matrix adjust. Identities = 138/177 (77%), Positives = 156/177 (88%) Query: 8 QKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAV 67 + II + + D + I++E+ KGFLVT+VD L+TWARTGSLMWMTFGLACCAV Sbjct: 15 KGIIDPSTGRPILSDDPFYKEINAELADKGFLVTTVDDLITWARTGSLMWMTFGLACCAV 74 Query: 68 EMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMG 127 EMMQ SMPRYD+ERFGFAPRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMG Sbjct: 75 EMMQVSMPRYDVERFGFAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMG 134 Query: 128 SCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 SCANGGGYYHYSY+VVRGCDR+VPVDIYVPGCPPTAEAL+YG+LLLQ+KIRR G ++ Sbjct: 135 SCANGGGYYHYSYAVVRGCDRVVPVDIYVPGCPPTAEALLYGVLLLQRKIRRTGTIE 191 >gi|75676078|ref|YP_318499.1| NADH dehydrogenase subunit B [Nitrobacter winogradskyi Nb-255] gi|123613264|sp|Q3SRE4|NUOB_NITWN RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|74420948|gb|ABA05147.1| NADH dehydrogenase subunit B [Nitrobacter winogradskyi Nb-255] Length = 207 Score = 301 bits (770), Expect = 4e-80, Method: Compositional matrix adjust. Identities = 138/162 (85%), Positives = 149/162 (91%) Query: 23 DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82 D F ++ E++ KGF V + D L+TWARTGSLMWMTFGLACCAVEMMQ SMPRYD+ERF Sbjct: 45 DPYFLEVNHELSDKGFFVAAADDLITWARTGSLMWMTFGLACCAVEMMQVSMPRYDVERF 104 Query: 83 GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142 GFAPRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSV Sbjct: 105 GFAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSV 164 Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 VRGCDRIVPVDIYVPGCPPTAEAL+YGILLLQKKIRRVG ++ Sbjct: 165 VRGCDRIVPVDIYVPGCPPTAEALLYGILLLQKKIRRVGTIE 206 >gi|121602032|ref|YP_989071.1| NADH dehydrogenase subunit B [Bartonella bacilliformis KC583] gi|238055234|sp|A1USW8|NUOB_BARBK RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|120614209|gb|ABM44810.1| NADH dehydrogenase (quinone), B subunit [Bartonella bacilliformis KC583] Length = 193 Score = 300 bits (769), Expect = 4e-80, Method: Compositional matrix adjust. Identities = 143/192 (74%), Positives = 162/192 (84%), Gaps = 8/192 (4%) Query: 1 MGLTTVNQKIISGQSSCSLE--------KVDADFSRISSEITHKGFLVTSVDQLVTWART 52 MGL N I++ Q+ ++ D F +++E++ KGFLVTSVD L+TWART Sbjct: 1 MGLVFNNSTIVAPQAKGIIDPNTSKLIGANDQFFQDMNAELSDKGFLVTSVDSLITWART 60 Query: 53 GSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRR 112 GSLMWM+FGLACCAVEMMQ SMP YD ERFG+APRASPRQSDVM+VAGTLTNKMA ALR+ Sbjct: 61 GSLMWMSFGLACCAVEMMQCSMPHYDNERFGYAPRASPRQSDVMVVAGTLTNKMAPALRK 120 Query: 113 VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILL 172 VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGILL Sbjct: 121 VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILL 180 Query: 173 LQKKIRRVGNVK 184 LQKKIRR G+++ Sbjct: 181 LQKKIRRTGSIE 192 >gi|27380029|ref|NP_771558.1| NADH dehydrogenase subunit B [Bradyrhizobium japonicum USDA 110] gi|81736772|sp|Q89KI7|NUOB_BRAJA RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|27353183|dbj|BAC50183.1| NADH ubiqionone oxidoreductase chain B [Bradyrhizobium japonicum USDA 110] Length = 202 Score = 300 bits (768), Expect = 6e-80, Method: Compositional matrix adjust. Identities = 138/182 (75%), Positives = 155/182 (85%) Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62 L + I+ + + D F ++SE++ KGF V + D L+TWARTGSLMWMTFGL Sbjct: 20 LAPAPKGILDPSTGKPVGANDPFFLEVNSELSDKGFFVAATDDLITWARTGSLMWMTFGL 79 Query: 63 ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122 ACCAVEMMQ SMPRYD+ERFGFAPRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRY Sbjct: 80 ACCAVEMMQVSMPRYDVERFGFAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRY 139 Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182 VISMGSCANGGGYYHYSYSVVRGCDRIVP+DIYVPGCPPTAEAL+YG+LLLQKKIRR G Sbjct: 140 VISMGSCANGGGYYHYSYSVVRGCDRIVPIDIYVPGCPPTAEALLYGVLLLQKKIRRTGT 199 Query: 183 VK 184 ++ Sbjct: 200 IE 201 >gi|85717029|ref|ZP_01047991.1| NADH dehydrogenase beta subunit [Nitrobacter sp. Nb-311A] gi|85696153|gb|EAQ34049.1| NADH dehydrogenase beta subunit [Nitrobacter sp. Nb-311A] Length = 200 Score = 300 bits (768), Expect = 6e-80, Method: Compositional matrix adjust. Identities = 137/162 (84%), Positives = 149/162 (91%) Query: 23 DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82 D F ++ E++ KGF V + D L+TWARTGSLMWMTFGLACCAVEMMQ SMPRYD+ERF Sbjct: 38 DPYFLEVNHELSDKGFFVAAADDLITWARTGSLMWMTFGLACCAVEMMQVSMPRYDVERF 97 Query: 83 GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142 GFAPRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSV Sbjct: 98 GFAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSV 157 Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 VRGCDRIVPVD+YVPGCPPTAEAL+YGILLLQKKIRRVG ++ Sbjct: 158 VRGCDRIVPVDVYVPGCPPTAEALLYGILLLQKKIRRVGTIE 199 >gi|209885052|ref|YP_002288909.1| NADH-quinone oxidoreductase subunit b 1 [Oligotropha carboxidovorans OM5] gi|238065186|sp|B6JGW0|NUOB_OLICO RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|209873248|gb|ACI93044.1| NADH-quinone oxidoreductase subunit b 1 [Oligotropha carboxidovorans OM5] Length = 198 Score = 299 bits (766), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 137/162 (84%), Positives = 149/162 (91%) Query: 23 DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82 D F I+ E++ KGF V + D L+TWARTGSLMWMTFGLACCAVEMMQ SMPRYD+ERF Sbjct: 36 DRYFLEINHELSDKGFFVAAADDLITWARTGSLMWMTFGLACCAVEMMQVSMPRYDVERF 95 Query: 83 GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142 GFAPRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSV Sbjct: 96 GFAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSV 155 Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 VRGCDRIVPVDIYVPGCPPTAEAL+YG+LLLQKKIRR+G ++ Sbjct: 156 VRGCDRIVPVDIYVPGCPPTAEALLYGVLLLQKKIRRIGTIE 197 >gi|220924006|ref|YP_002499308.1| NADH dehydrogenase subunit B [Methylobacterium nodulans ORS 2060] gi|238065169|sp|B8IUU7|NUOB_METNO RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|219948613|gb|ACL59005.1| NADH-quinone oxidoreductase, B subunit [Methylobacterium nodulans ORS 2060] Length = 197 Score = 299 bits (766), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 137/177 (77%), Positives = 153/177 (86%) Query: 8 QKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAV 67 + II + + D F I+ E+ +GFL+T+ D L+TWARTGSLMWMTFGLACCAV Sbjct: 20 KGIIDPATGLPVGATDPTFLSINDELADRGFLLTTADDLITWARTGSLMWMTFGLACCAV 79 Query: 68 EMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMG 127 EMMQ SMPRYD ERFGFAPRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMG Sbjct: 80 EMMQMSMPRYDAERFGFAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMG 139 Query: 128 SCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 SCANGGGYYHYSYSVVRGCDR+VPVDIYVPGCPP+AEAL+YG+LLLQKKIRR G ++ Sbjct: 140 SCANGGGYYHYSYSVVRGCDRVVPVDIYVPGCPPSAEALLYGVLLLQKKIRRTGTIE 196 >gi|170742512|ref|YP_001771167.1| NADH dehydrogenase subunit B [Methylobacterium sp. 4-46] gi|238065172|sp|B0ULK5|NUOB_METS4 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|168196786|gb|ACA18733.1| NADH-quinone oxidoreductase, B subunit [Methylobacterium sp. 4-46] Length = 195 Score = 298 bits (764), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 136/177 (76%), Positives = 153/177 (86%) Query: 8 QKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAV 67 + I+ + + D F I+ E+ +GFL+T+ D L+TWARTGSLMWMTFGLACCAV Sbjct: 18 KGILDPATGLPIGATDPTFLSINDELADRGFLLTTADDLITWARTGSLMWMTFGLACCAV 77 Query: 68 EMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMG 127 EMMQ SMPRYD ERFGFAPRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMG Sbjct: 78 EMMQMSMPRYDAERFGFAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMG 137 Query: 128 SCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 SCANGGGYYHYSYSVVRGCDR+VPVDIYVPGCPP+AEAL+YG+LLLQKKIRR G ++ Sbjct: 138 SCANGGGYYHYSYSVVRGCDRVVPVDIYVPGCPPSAEALLYGVLLLQKKIRRTGTIE 194 >gi|92117743|ref|YP_577472.1| NADH dehydrogenase subunit B [Nitrobacter hamburgensis X14] gi|123387068|sp|Q1QL85|NUOB_NITHX RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|91800637|gb|ABE63012.1| NADH dehydrogenase subunit B [Nitrobacter hamburgensis X14] Length = 202 Score = 298 bits (764), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 137/182 (75%), Positives = 155/182 (85%) Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62 +T I+ ++ + D F ++ E++ KGF V + D L+TWARTGSLMWMTFGL Sbjct: 20 VTPAAASILDPRTGRPVGAGDPYFLEVNHELSDKGFFVAATDDLITWARTGSLMWMTFGL 79 Query: 63 ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122 ACCAVEMMQ SMPRYD+ERFGFAPRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRY Sbjct: 80 ACCAVEMMQVSMPRYDVERFGFAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRY 139 Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182 VISMGSCANGGGYYHYSYSVVRGCDRIVP+D+YVPGCPPTAEAL+YGILLLQKKIRR G Sbjct: 140 VISMGSCANGGGYYHYSYSVVRGCDRIVPIDVYVPGCPPTAEALLYGILLLQKKIRRTGT 199 Query: 183 VK 184 ++ Sbjct: 200 IE 201 >gi|49475657|ref|YP_033698.1| NADH dehydrogenase subunit B [Bartonella henselae str. Houston-1] gi|81647866|sp|Q6G389|NUOB_BARHE RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|49238464|emb|CAF27692.1| NADH dehydrogenase I, B subunit [Bartonella henselae str. Houston-1] Length = 193 Score = 298 bits (763), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 142/192 (73%), Positives = 163/192 (84%), Gaps = 8/192 (4%) Query: 1 MGLTTVNQKIISGQSSCSL-----EKVDAD---FSRISSEITHKGFLVTSVDQLVTWART 52 MGL + N I + +S + E + +D F +++E++ KGFLVTS D L+TWART Sbjct: 1 MGLISSNSTITAPKSKGIIDPNTGELIGSDDRFFCEVNAELSEKGFLVTSADALITWART 60 Query: 53 GSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRR 112 GSLMWM+FGLACCA+EMMQ SMP YD ERFG+APRASPRQSDVM+VAGTLTNKMA ALR+ Sbjct: 61 GSLMWMSFGLACCAIEMMQCSMPHYDNERFGYAPRASPRQSDVMVVAGTLTNKMAPALRK 120 Query: 113 VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILL 172 VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGILL Sbjct: 121 VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILL 180 Query: 173 LQKKIRRVGNVK 184 LQKKIRR G+++ Sbjct: 181 LQKKIRRTGSIE 192 >gi|319405697|emb|CBI79320.1| NADH dehydrogenase I, B subunit [Bartonella sp. AR 15-3] Length = 193 Score = 298 bits (763), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 139/168 (82%), Positives = 154/168 (91%), Gaps = 3/168 (1%) Query: 20 EKVDAD---FSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPR 76 E VD++ FS I++E+ KGFLVTS D L+TWARTGSLMWM+FGLACCAVEMMQ SMP Sbjct: 25 ELVDSNNKFFSDINTELGDKGFLVTSADALITWARTGSLMWMSFGLACCAVEMMQCSMPH 84 Query: 77 YDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY 136 YD ERFG+APRASPRQSDVM+VAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYY Sbjct: 85 YDNERFGYAPRASPRQSDVMVVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYY 144 Query: 137 HYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 HYSYSVVRGCDRIVPVDIY+PGCPPTAEAL+YGILLLQKKIRR G+++ Sbjct: 145 HYSYSVVRGCDRIVPVDIYIPGCPPTAEALLYGILLLQKKIRRTGSIE 192 >gi|299135032|ref|ZP_07028223.1| NADH-quinone oxidoreductase, B subunit [Afipia sp. 1NLS2] gi|298590009|gb|EFI50213.1| NADH-quinone oxidoreductase, B subunit [Afipia sp. 1NLS2] Length = 197 Score = 298 bits (763), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 137/162 (84%), Positives = 148/162 (91%) Query: 23 DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82 D F I+ E++ KGF V + D L+TWARTGSLMWMTFGLACCAVEMMQ SMPRYD+ERF Sbjct: 35 DRYFLEINHELSDKGFFVAAADDLITWARTGSLMWMTFGLACCAVEMMQVSMPRYDVERF 94 Query: 83 GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142 GFAPRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSV Sbjct: 95 GFAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSV 154 Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 VRGCDRIVPVDIYVPGCPPTAEAL+YG+LLLQKKIRR G ++ Sbjct: 155 VRGCDRIVPVDIYVPGCPPTAEALLYGVLLLQKKIRRTGTIE 196 >gi|319898883|ref|YP_004158976.1| NADH dehydrogenase I, B subunit [Bartonella clarridgeiae 73] gi|319402847|emb|CBI76398.1| NADH dehydrogenase I, B subunit [Bartonella clarridgeiae 73] Length = 193 Score = 298 bits (763), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 138/162 (85%), Positives = 150/162 (92%) Query: 23 DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82 D FS I++E+ KGFLVTS D L+TWARTGSLMWM+FGLACCAVEMMQ SMP YD ERF Sbjct: 31 DKFFSDINTELGDKGFLVTSADALITWARTGSLMWMSFGLACCAVEMMQCSMPHYDNERF 90 Query: 83 GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142 G+APRASPRQSDVM+VAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSV Sbjct: 91 GYAPRASPRQSDVMVVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSV 150 Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 VRGCDRIVPVDIYVPGCPPTAEAL+YGILLLQKKIRR G+++ Sbjct: 151 VRGCDRIVPVDIYVPGCPPTAEALLYGILLLQKKIRRTGSIE 192 >gi|326538542|gb|ADZ86757.1| NADH-quinone oxidoreductase, B subunit [Brucella melitensis M5-90] Length = 191 Score = 298 bits (763), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 137/162 (84%), Positives = 149/162 (91%) Query: 23 DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82 DA F+ ++ E++ KGF+VTS D L+TWARTGSLMWMTFGLACCAVEMM SMPRYD ERF Sbjct: 29 DAFFNDLNGELSDKGFIVTSADALITWARTGSLMWMTFGLACCAVEMMHISMPRYDAERF 88 Query: 83 GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142 G APRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSV Sbjct: 89 GIAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSV 148 Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 VRGCDR+VPVDIYVPGCPPTAEAL+YGILLLQKKIRR G ++ Sbjct: 149 VRGCDRVVPVDIYVPGCPPTAEALLYGILLLQKKIRRTGTIE 190 >gi|319404258|emb|CBI77851.1| NADH dehydrogenase I, B subunit [Bartonella rochalimae ATCC BAA-1498] Length = 193 Score = 298 bits (762), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 137/162 (84%), Positives = 151/162 (93%) Query: 23 DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82 D FS I++E+ KGFLVTSVD L+TWARTGSLMWM+FGLACCAVEM+Q SMP YD ERF Sbjct: 31 DKFFSDINAELGDKGFLVTSVDALITWARTGSLMWMSFGLACCAVEMIQCSMPHYDNERF 90 Query: 83 GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142 G+APRASPRQSDVM+VAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSV Sbjct: 91 GYAPRASPRQSDVMVVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSV 150 Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 VRGCDRIVPVDIY+PGCPPTAEAL+YGILLLQKKIRR G+++ Sbjct: 151 VRGCDRIVPVDIYIPGCPPTAEALLYGILLLQKKIRRTGSIE 192 >gi|114569906|ref|YP_756586.1| NADH dehydrogenase subunit B [Maricaulis maris MCS10] gi|122316124|sp|Q0APY9|NUOB_MARMM RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|114340368|gb|ABI65648.1| NADH dehydrogenase subunit B [Maricaulis maris MCS10] Length = 188 Score = 298 bits (762), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 139/165 (84%), Positives = 150/165 (90%) Query: 20 EKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDL 79 +K D F +S + KGF+V + D LVTWARTGSLMWMTFGLACCAVEMMQASMPRYD+ Sbjct: 23 KKHDPFFDGVSDALADKGFVVAAADDLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDV 82 Query: 80 ERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS 139 ERFGFAPRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYS Sbjct: 83 ERFGFAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYS 142 Query: 140 YSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 YSVVRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQKKIRR G+++ Sbjct: 143 YSVVRGCDRIVPVDIYVPGCPPTAEALVYGILQLQKKIRREGSIE 187 >gi|328543686|ref|YP_004303795.1| NADH-quinone oxidoreductase subunit B [polymorphum gilvum SL003B-26A1] gi|326413430|gb|ADZ70493.1| NADH-quinone oxidoreductase subunit B [Polymorphum gilvum SL003B-26A1] Length = 193 Score = 298 bits (762), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 142/192 (73%), Positives = 157/192 (81%), Gaps = 8/192 (4%) Query: 1 MGLTTVN--------QKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWART 52 MGLTT + II + + D F ++ E+ KGFLVT+ D L+ WART Sbjct: 1 MGLTTTKGPLVAPAPRGIIDPNTGKPVGANDPFFMGMNDELADKGFLVTTTDNLIQWART 60 Query: 53 GSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRR 112 GSLMWMTFGLACCAVEMMQ SMPRYD ERFGFAPRASPRQSDVMIVAGTLTNKMA ALR+ Sbjct: 61 GSLMWMTFGLACCAVEMMQMSMPRYDAERFGFAPRASPRQSDVMIVAGTLTNKMAPALRK 120 Query: 113 VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILL 172 VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR+VPVDIYVPGCPPTAEAL+YG+L+ Sbjct: 121 VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRVVPVDIYVPGCPPTAEALLYGVLM 180 Query: 173 LQKKIRRVGNVK 184 LQKKIRR G ++ Sbjct: 181 LQKKIRRTGTIE 192 >gi|188580284|ref|YP_001923729.1| NADH dehydrogenase subunit B [Methylobacterium populi BJ001] gi|238065170|sp|B1ZA45|NUOB_METPB RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|179343782|gb|ACB79194.1| NADH-quinone oxidoreductase, B subunit [Methylobacterium populi BJ001] Length = 195 Score = 297 bits (761), Expect = 4e-79, Method: Compositional matrix adjust. Identities = 138/177 (77%), Positives = 153/177 (86%) Query: 8 QKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAV 67 + II + + D F ISSE+ +GFLVTS D+L+ WARTGSLMWMTFGLACCAV Sbjct: 18 KGIIDPATGRPIGANDPTFLSISSELADRGFLVTSADELINWARTGSLMWMTFGLACCAV 77 Query: 68 EMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMG 127 EMMQ SMPRYD ERFGFAPR SPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMG Sbjct: 78 EMMQMSMPRYDCERFGFAPRGSPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMG 137 Query: 128 SCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 SCANGGGYYHYSYSVVRGCDR+VPVDIYVPGCPP+AEAL+YG+LLLQ+KIRR G ++ Sbjct: 138 SCANGGGYYHYSYSVVRGCDRVVPVDIYVPGCPPSAEALLYGVLLLQRKIRRTGTIE 194 >gi|319408580|emb|CBI82235.1| NADH dehydrogenase I, B subunit [Bartonella schoenbuchensis R1] Length = 176 Score = 297 bits (761), Expect = 4e-79, Method: Compositional matrix adjust. Identities = 137/162 (84%), Positives = 150/162 (92%) Query: 23 DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82 D F I++E++ KGFLVTS D L+TWARTGSLMWM+FGLACCAVEMMQ SMP YD ERF Sbjct: 14 DKFFHDINAELSDKGFLVTSADALITWARTGSLMWMSFGLACCAVEMMQCSMPHYDNERF 73 Query: 83 GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142 G+APRASPRQSDVM+VAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSV Sbjct: 74 GYAPRASPRQSDVMVVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSV 133 Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 VRGCDRIVPVDIYVPGCPPTAEAL+YGILLLQKKIRR G+++ Sbjct: 134 VRGCDRIVPVDIYVPGCPPTAEALLYGILLLQKKIRRTGSIE 175 >gi|146341114|ref|YP_001206162.1| NADH dehydrogenase subunit B [Bradyrhizobium sp. ORS278] gi|238055272|sp|A4YVL1|NUOB_BRASO RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|146193920|emb|CAL77937.1| NADH-quinone oxidoreductase chain B (NADH dehydrogenase I, chain B) (NDH-1, chain B) [Bradyrhizobium sp. ORS278] Length = 193 Score = 297 bits (760), Expect = 5e-79, Method: Compositional matrix adjust. Identities = 135/162 (83%), Positives = 147/162 (90%) Query: 23 DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82 D F + E++ KGF V + D L+TWARTGSLMWMTFGLACCAVEMMQ SMPRYD+ERF Sbjct: 31 DPYFLEVKHELSDKGFFVATADDLITWARTGSLMWMTFGLACCAVEMMQVSMPRYDVERF 90 Query: 83 GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142 GFAPRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSV Sbjct: 91 GFAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSV 150 Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 VRGCDRIVP+DIYVPGCPPTAEAL+YG+LLLQKKIRR G ++ Sbjct: 151 VRGCDRIVPIDIYVPGCPPTAEALLYGVLLLQKKIRRTGTIE 192 >gi|319407266|emb|CBI80905.1| NADH dehydrogenase I, B subunit [Bartonella sp. 1-1C] Length = 193 Score = 297 bits (760), Expect = 5e-79, Method: Compositional matrix adjust. Identities = 136/162 (83%), Positives = 151/162 (93%) Query: 23 DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82 D F+ I++E+ KGFLVTSVD L+TWARTGSLMWM+FGLACCAVEM+Q SMP YD ERF Sbjct: 31 DKFFNDINAELGDKGFLVTSVDSLITWARTGSLMWMSFGLACCAVEMIQCSMPHYDNERF 90 Query: 83 GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142 G+APRASPRQSDVM+VAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSV Sbjct: 91 GYAPRASPRQSDVMVVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSV 150 Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 VRGCDRIVPVDIY+PGCPPTAEAL+YGILLLQKKIRR G+++ Sbjct: 151 VRGCDRIVPVDIYIPGCPPTAEALLYGILLLQKKIRRTGSIE 192 >gi|148255914|ref|YP_001240499.1| NADH dehydrogenase subunit B [Bradyrhizobium sp. BTAi1] gi|238055271|sp|A5EK99|NUOB_BRASB RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|146408087|gb|ABQ36593.1| NADH dehydrogenase subunit B [Bradyrhizobium sp. BTAi1] Length = 194 Score = 296 bits (759), Expect = 6e-79, Method: Compositional matrix adjust. Identities = 135/162 (83%), Positives = 147/162 (90%) Query: 23 DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82 D F + E++ KGF V + D L+TWARTGSLMWMTFGLACCAVEMMQ SMPRYD+ERF Sbjct: 32 DPYFLEVRHELSDKGFFVATADDLITWARTGSLMWMTFGLACCAVEMMQVSMPRYDVERF 91 Query: 83 GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142 GFAPRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSV Sbjct: 92 GFAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSV 151 Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 VRGCDRIVP+DIYVPGCPPTAEAL+YG+LLLQKKIRR G ++ Sbjct: 152 VRGCDRIVPIDIYVPGCPPTAEALLYGVLLLQKKIRRTGTIE 193 >gi|170748477|ref|YP_001754737.1| NADH-quinone oxidoreductase, B subunit [Methylobacterium radiotolerans JCM 2831] gi|238065171|sp|B1LUN6|NUOB_METRJ RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|170654999|gb|ACB24054.1| NADH-quinone oxidoreductase, B subunit [Methylobacterium radiotolerans JCM 2831] Length = 195 Score = 296 bits (759), Expect = 6e-79, Method: Compositional matrix adjust. Identities = 137/177 (77%), Positives = 152/177 (85%) Query: 8 QKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAV 67 + II + + D F IS E+ +GFL+T+ D+L+ WARTGSLMWMTFGLACCAV Sbjct: 18 KGIIDPNTGRPIGADDPTFLSISDELADRGFLLTTTDELINWARTGSLMWMTFGLACCAV 77 Query: 68 EMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMG 127 EMMQ SMPRYD ERFGFAPR SPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMG Sbjct: 78 EMMQMSMPRYDCERFGFAPRGSPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMG 137 Query: 128 SCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 SCANGGGYYHYSYSVVRGCDR+VPVDIYVPGCPPTAEAL+YG+LLLQKKIRR G ++ Sbjct: 138 SCANGGGYYHYSYSVVRGCDRVVPVDIYVPGCPPTAEALLYGVLLLQKKIRRTGTIE 194 >gi|49474178|ref|YP_032220.1| NADH dehydrogenase subunit B [Bartonella quintana str. Toulouse] gi|81647090|sp|Q6FZZ0|NUOB_BARQU RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|49239682|emb|CAF26057.1| NADH dehydrogenase I, B subunit [Bartonella quintana str. Toulouse] Length = 193 Score = 296 bits (759), Expect = 7e-79, Method: Compositional matrix adjust. Identities = 138/178 (77%), Positives = 156/178 (87%) Query: 7 NQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCA 66 ++ II + + D F I++E++ KGFLVTS D L+TWARTGSLMWM+FGLACCA Sbjct: 15 SKGIIDPNTGKLIGSDDRFFHDINAELSDKGFLVTSADALITWARTGSLMWMSFGLACCA 74 Query: 67 VEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISM 126 +EMMQ SMP YD ERFG+APRASPRQSDVM+VAGTLTNKMA ALR+VYDQMPEPRYVISM Sbjct: 75 IEMMQCSMPHYDNERFGYAPRASPRQSDVMVVAGTLTNKMAPALRKVYDQMPEPRYVISM 134 Query: 127 GSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 GSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGILLLQKKIRR G+++ Sbjct: 135 GSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILLLQKKIRRTGSIE 192 >gi|15888598|ref|NP_354279.1| NADH dehydrogenase subunit B [Agrobacterium tumefaciens str. C58] gi|15156318|gb|AAK87064.1| NADH ubiqionone oxidoreductase chain B [Agrobacterium tumefaciens str. C58] Length = 201 Score = 296 bits (758), Expect = 8e-79, Method: Compositional matrix adjust. Identities = 140/193 (72%), Positives = 161/193 (83%), Gaps = 9/193 (4%) Query: 1 MGLTTVNQKIISGQSSCSLEKV--------DADFSRISSEITHKGFLVTSVDQLVTWART 52 MG++ N +++ Q ++ DA F+ I+ E+ KGFLVTS D+L+TWART Sbjct: 8 MGMSQNNSTLVAPQPKGIIDPATGKPVGSNDAYFTEINDELADKGFLVTSTDELITWART 67 Query: 53 GSLMWMTFGLACCAVE-MMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALR 111 GSLMWM FGLACCAVE +MQAS PRYD+ERFG APRASPRQSDVMIVAGTLTNKMA ALR Sbjct: 68 GSLMWMQFGLACCAVEGLMQASGPRYDMERFGVAPRASPRQSDVMIVAGTLTNKMAPALR 127 Query: 112 RVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171 +VYDQMPEPRYVISMGSCANGGGYYHYSY+VVRGCDR+VPVDIYVPGCPPTAEAL+YG+L Sbjct: 128 KVYDQMPEPRYVISMGSCANGGGYYHYSYAVVRGCDRVVPVDIYVPGCPPTAEALLYGVL 187 Query: 172 LLQKKIRRVGNVK 184 LLQKKIRR G ++ Sbjct: 188 LLQKKIRRTGTIE 200 >gi|254469713|ref|ZP_05083118.1| NADH-ubiquinone oxidoreductase chain b protein [Pseudovibrio sp. JE062] gi|211961548|gb|EEA96743.1| NADH-ubiquinone oxidoreductase chain b protein [Pseudovibrio sp. JE062] Length = 194 Score = 296 bits (758), Expect = 9e-79, Method: Compositional matrix adjust. Identities = 137/177 (77%), Positives = 154/177 (87%) Query: 8 QKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAV 67 + II + + + D F +++E++ KGFLVTS + L+ WARTGSLMWMTFGLACCAV Sbjct: 17 KGIIDPNTGRPVGENDPFFMNVNNELSDKGFLVTSSESLIQWARTGSLMWMTFGLACCAV 76 Query: 68 EMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMG 127 EMMQ SMPRYD ERFGFAPR SPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMG Sbjct: 77 EMMQMSMPRYDAERFGFAPRGSPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMG 136 Query: 128 SCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 SCANGGGYYHYSYSVVRGCDR+VPVDIYVPGCPPTAEAL+YG+LLLQKKIRR G ++ Sbjct: 137 SCANGGGYYHYSYSVVRGCDRVVPVDIYVPGCPPTAEALLYGVLLLQKKIRRTGTIE 193 >gi|86749691|ref|YP_486187.1| NADH dehydrogenase subunit B [Rhodopseudomonas palustris HaA2] gi|86572719|gb|ABD07276.1| NADH-quinone oxidoreductase, B subunit [Rhodopseudomonas palustris HaA2] Length = 204 Score = 296 bits (758), Expect = 9e-79, Method: Compositional matrix adjust. Identities = 137/175 (78%), Positives = 151/175 (86%) Query: 10 IISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEM 69 II + + D F ++ E++ KGF V + D L+TWARTGSLMWMTFGLACCAVEM Sbjct: 29 IIDPNTGKPVGADDPFFLDVNRELSDKGFFVAATDDLITWARTGSLMWMTFGLACCAVEM 88 Query: 70 MQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSC 129 MQ SMPRYD ERFGFAPRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSC Sbjct: 89 MQLSMPRYDAERFGFAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSC 148 Query: 130 ANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 ANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG++LLQKKIRR G ++ Sbjct: 149 ANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGVMLLQKKIRRTGTIE 203 >gi|163868372|ref|YP_001609581.1| NADH dehydrogenase subunit B [Bartonella tribocorum CIP 105476] gi|238055237|sp|A9IUQ3|NUOB_BART1 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|161018028|emb|CAK01586.1| NADH dehydrogenase I, B subunit [Bartonella tribocorum CIP 105476] Length = 193 Score = 296 bits (757), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 136/162 (83%), Positives = 150/162 (92%) Query: 23 DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82 D F I++E++ KGFLVTS D L+TWARTGSLMWM+FGLACCA+EMMQ SMP YD ERF Sbjct: 31 DRFFRDINAELSDKGFLVTSADALITWARTGSLMWMSFGLACCAIEMMQCSMPHYDNERF 90 Query: 83 GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142 G+APRASPRQSDVM+VAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSV Sbjct: 91 GYAPRASPRQSDVMVVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSV 150 Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 VRGCDRIVPVDIYVPGCPPTAEAL+YGILLLQKKIRR G+++ Sbjct: 151 VRGCDRIVPVDIYVPGCPPTAEALLYGILLLQKKIRRTGSIE 192 >gi|182679352|ref|YP_001833498.1| NADH-quinone oxidoreductase, B subunit [Beijerinckia indica subsp. indica ATCC 9039] gi|238055244|sp|B2IHW6|NUOB_BEII9 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|182635235|gb|ACB96009.1| NADH-quinone oxidoreductase, B subunit [Beijerinckia indica subsp. indica ATCC 9039] Length = 180 Score = 296 bits (757), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 140/184 (76%), Positives = 154/184 (83%), Gaps = 5/184 (2%) Query: 1 MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTF 60 MGL Q ++ + D F I+ ++ KGFLVTS D+L+ WARTGSLMWMTF Sbjct: 1 MGLIATPQPVVGTPPA-----QDNYFLSINDQLADKGFLVTSTDELINWARTGSLMWMTF 55 Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 GLACCAVEMMQ SMPRYD ERFGFAPR SPRQSDVMIVAGTLTNKMA ALR+VYDQMPEP Sbjct: 56 GLACCAVEMMQMSMPRYDCERFGFAPRGSPRQSDVMIVAGTLTNKMAPALRKVYDQMPEP 115 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP+AEAL+YG+LLLQKKIRR Sbjct: 116 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPSAEALLYGVLLLQKKIRRT 175 Query: 181 GNVK 184 G ++ Sbjct: 176 GTIE 179 >gi|115524527|ref|YP_781438.1| NADH dehydrogenase subunit B [Rhodopseudomonas palustris BisA53] gi|122296214|sp|Q07NM6|NUOB2_RHOP5 RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName: Full=NADH dehydrogenase I subunit B 2; AltName: Full=NDH-1 subunit B 2 gi|115518474|gb|ABJ06458.1| NADH-quinone oxidoreductase, B subunit [Rhodopseudomonas palustris BisA53] Length = 200 Score = 296 bits (757), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 133/162 (82%), Positives = 149/162 (91%) Query: 23 DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82 D F +++E++ KGF V + D L+TWARTGSLMWMTFGLACCAVEMMQ SMPRYD ERF Sbjct: 38 DRFFVEVNNELSDKGFFVAATDDLITWARTGSLMWMTFGLACCAVEMMQMSMPRYDAERF 97 Query: 83 GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142 GFAPRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSY+V Sbjct: 98 GFAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYAV 157 Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 VRGCDRIVP+DIYVPGCPPTAEAL+YG++LLQKKIRR+G ++ Sbjct: 158 VRGCDRIVPIDIYVPGCPPTAEALLYGVMLLQKKIRRIGTIE 199 >gi|316933892|ref|YP_004108874.1| NADH-quinone oxidoreductase subunit B [Rhodopseudomonas palustris DX-1] gi|315601606|gb|ADU44141.1| NADH-quinone oxidoreductase, B subunit [Rhodopseudomonas palustris DX-1] Length = 198 Score = 296 bits (757), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 136/175 (77%), Positives = 151/175 (86%) Query: 10 IISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEM 69 II + + D F ++ E++ KGF V + D L+TWARTGSLMWMTFGLACCAVEM Sbjct: 23 IIDPSTGKPVGANDPFFLNVNRELSDKGFFVAATDDLITWARTGSLMWMTFGLACCAVEM 82 Query: 70 MQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSC 129 MQ SMPRYD ERFGFAPRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSC Sbjct: 83 MQLSMPRYDAERFGFAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSC 142 Query: 130 ANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 ANGGGYYHYSYSVVRGCDRIVP+DIYVPGCPPTAEAL+YG++LLQKKIRR G ++ Sbjct: 143 ANGGGYYHYSYSVVRGCDRIVPIDIYVPGCPPTAEALLYGVMLLQKKIRRTGTIE 197 >gi|325292633|ref|YP_004278497.1| NADH dehydrogenase I chain B [Agrobacterium sp. H13-3] gi|238065076|sp|A9CJB2|NUOB_AGRT5 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|325060486|gb|ADY64177.1| NADH dehydrogenase I chain B [Agrobacterium sp. H13-3] Length = 194 Score = 296 bits (757), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 140/193 (72%), Positives = 161/193 (83%), Gaps = 9/193 (4%) Query: 1 MGLTTVNQKIISGQSSCSLEKV--------DADFSRISSEITHKGFLVTSVDQLVTWART 52 MG++ N +++ Q ++ DA F+ I+ E+ KGFLVTS D+L+TWART Sbjct: 1 MGMSQNNSTLVAPQPKGIIDPATGKPVGSNDAYFTEINDELADKGFLVTSTDELITWART 60 Query: 53 GSLMWMTFGLACCAVE-MMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALR 111 GSLMWM FGLACCAVE +MQAS PRYD+ERFG APRASPRQSDVMIVAGTLTNKMA ALR Sbjct: 61 GSLMWMQFGLACCAVEGLMQASGPRYDMERFGVAPRASPRQSDVMIVAGTLTNKMAPALR 120 Query: 112 RVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171 +VYDQMPEPRYVISMGSCANGGGYYHYSY+VVRGCDR+VPVDIYVPGCPPTAEAL+YG+L Sbjct: 121 KVYDQMPEPRYVISMGSCANGGGYYHYSYAVVRGCDRVVPVDIYVPGCPPTAEALLYGVL 180 Query: 172 LLQKKIRRVGNVK 184 LLQKKIRR G ++ Sbjct: 181 LLQKKIRRTGTIE 193 >gi|163850516|ref|YP_001638559.1| NADH-quinone oxidoreductase, B subunit [Methylobacterium extorquens PA1] gi|218529213|ref|YP_002420029.1| NADH dehydrogenase subunit B [Methylobacterium chloromethanicum CM4] gi|240137581|ref|YP_002962052.1| NADH-quinone oxidoreductase chain B (NADH dehydrogenase I, chain B) [Methylobacterium extorquens AM1] gi|254560052|ref|YP_003067147.1| NADH-quinone oxidoreductase subunit B [Methylobacterium extorquens DM4] gi|238065167|sp|A9W1N2|NUOB_METEP RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|254767795|sp|B7KQ65|NUOB_METC4 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|163662121|gb|ABY29488.1| NADH-quinone oxidoreductase, B subunit [Methylobacterium extorquens PA1] gi|218521516|gb|ACK82101.1| NADH-quinone oxidoreductase, B subunit [Methylobacterium chloromethanicum CM4] gi|240007549|gb|ACS38775.1| NADH-quinone oxidoreductase chain B (NADH dehydrogenase I, chain B) [Methylobacterium extorquens AM1] gi|254267330|emb|CAX23162.1| NADH-quinone oxidoreductase chain B (NADH dehydrogenase I, chain B) [Methylobacterium extorquens DM4] Length = 195 Score = 296 bits (757), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 136/177 (76%), Positives = 153/177 (86%) Query: 8 QKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAV 67 + II + + D F I+ E+ +GFLVTS D+L+ WARTGSLMWMTFGLACCAV Sbjct: 18 KGIIDPATGRPIGANDPTFLSINDELADRGFLVTSADELINWARTGSLMWMTFGLACCAV 77 Query: 68 EMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMG 127 EMMQ SMPRYD ERFGFAPR SPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMG Sbjct: 78 EMMQMSMPRYDCERFGFAPRGSPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMG 137 Query: 128 SCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 SCANGGGYYHYSYSVVRGCDR+VPVDIYVPGCPP+AEAL+YG+LLLQ+KIRR+G ++ Sbjct: 138 SCANGGGYYHYSYSVVRGCDRVVPVDIYVPGCPPSAEALLYGVLLLQRKIRRIGTIE 194 >gi|240850584|ref|YP_002971984.1| NADH dehydrogenase I subunit B [Bartonella grahamii as4aup] gi|240267707|gb|ACS51295.1| NADH dehydrogenase I subunit B [Bartonella grahamii as4aup] Length = 193 Score = 296 bits (757), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 135/162 (83%), Positives = 150/162 (92%) Query: 23 DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82 D F +++E++ KGFLVTS D L+TWARTGSLMWM+FGLACCA+EMMQ SMP YD ERF Sbjct: 31 DKFFRDLNAELSDKGFLVTSADALITWARTGSLMWMSFGLACCAIEMMQCSMPHYDNERF 90 Query: 83 GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142 G+APRASPRQSDVM+VAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSV Sbjct: 91 GYAPRASPRQSDVMVVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSV 150 Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 VRGCDRIVPVDIYVPGCPPTAEAL+YGILLLQKKIRR G+++ Sbjct: 151 VRGCDRIVPVDIYVPGCPPTAEALLYGILLLQKKIRRTGSIE 192 >gi|110633377|ref|YP_673585.1| NADH dehydrogenase subunit B [Mesorhizobium sp. BNC1] gi|122966123|sp|Q11JK5|NUOB_MESSB RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|110284361|gb|ABG62420.1| NADH dehydrogenase subunit B [Chelativorans sp. BNC1] Length = 190 Score = 296 bits (757), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 139/178 (78%), Positives = 153/178 (85%) Query: 7 NQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCA 66 ++ II + + D + I+ E++ KGFLVTS + L+TWARTGSLMWMTFGLACCA Sbjct: 12 SRGIIDPNTGNPVGANDPFYGAINEELSDKGFLVTSSEALITWARTGSLMWMTFGLACCA 71 Query: 67 VEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISM 126 VEMM SMPRYD ERFG APRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISM Sbjct: 72 VEMMHTSMPRYDAERFGIAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISM 131 Query: 127 GSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 GSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGILLLQKKIRR G ++ Sbjct: 132 GSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILLLQKKIRRTGTIE 189 >gi|90417843|ref|ZP_01225755.1| NADH dehydrogenase I, B subunit [Aurantimonas manganoxydans SI85-9A1] gi|90337515|gb|EAS51166.1| NADH dehydrogenase I, B subunit [Aurantimonas manganoxydans SI85-9A1] Length = 194 Score = 296 bits (757), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 135/162 (83%), Positives = 148/162 (91%) Query: 23 DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82 D + +++E+ KGFLVTS + L+ WARTGSLMWMTFGLACCAVEMMQ SMPRYD ERF Sbjct: 32 DPFVTDVNNELADKGFLVTSTEDLIQWARTGSLMWMTFGLACCAVEMMQMSMPRYDAERF 91 Query: 83 GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142 GFAPRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSV Sbjct: 92 GFAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSV 151 Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 VRGCDR+VPVDIYVPGCPPTAEAL+YG+LLLQKKIRR G ++ Sbjct: 152 VRGCDRVVPVDIYVPGCPPTAEALLYGVLLLQKKIRRTGTIE 193 >gi|23006634|ref|ZP_00048864.1| COG0377: NADH:ubiquinone oxidoreductase 20 kD subunit and related Fe-S oxidoreductases [Magnetospirillum magnetotacticum MS-1] Length = 195 Score = 295 bits (756), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 136/177 (76%), Positives = 153/177 (86%) Query: 8 QKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAV 67 + II + + D F I+ E+ +GFLVTS D+L+ WARTGSLMWMTFGLACCAV Sbjct: 18 KGIIDPATGRPIGANDPTFLSINDELADRGFLVTSADELINWARTGSLMWMTFGLACCAV 77 Query: 68 EMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMG 127 EMMQ SMPRYD ERFGFAPR SPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMG Sbjct: 78 EMMQMSMPRYDCERFGFAPRGSPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMG 137 Query: 128 SCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 SCANGGGYYHYSYSVVRGCDR+VPVDIYVPGCPP+AEAL+YG+LLLQ+KIRR+G ++ Sbjct: 138 SCANGGGYYHYSYSVVRGCDRVVPVDIYVPGCPPSAEALLYGVLLLQRKIRRLGTIE 194 >gi|39936016|ref|NP_948292.1| NADH dehydrogenase subunit B [Rhodopseudomonas palustris CGA009] gi|192291671|ref|YP_001992276.1| NADH dehydrogenase subunit B [Rhodopseudomonas palustris TIE-1] gi|81562349|sp|Q6N5M3|NUOB1_RHOPA RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName: Full=NADH dehydrogenase I subunit B 1; AltName: Full=NDH-1 subunit B 1 gi|238065014|sp|B3Q7N5|NUOB1_RHOPT RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName: Full=NADH dehydrogenase I subunit B 1; AltName: Full=NDH-1 subunit B 1 gi|39649870|emb|CAE28392.1| NADH-ubiquinone dehydrogenase chain B [Rhodopseudomonas palustris CGA009] gi|192285420|gb|ACF01801.1| NADH-quinone oxidoreductase, B subunit [Rhodopseudomonas palustris TIE-1] Length = 198 Score = 295 bits (755), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 136/175 (77%), Positives = 151/175 (86%) Query: 10 IISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEM 69 II + + D F ++ E++ KGF V + D L+TWARTGSLMWMTFGLACCAVEM Sbjct: 23 IIDPNTGRPVGADDPFFLNVNRELSDKGFFVAATDDLITWARTGSLMWMTFGLACCAVEM 82 Query: 70 MQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSC 129 MQ SMPRYD ERFGFAPRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSC Sbjct: 83 MQLSMPRYDAERFGFAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSC 142 Query: 130 ANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 ANGGGYYHYSYSVVRGCDRIVP+DIYVPGCPPTAEAL+YG++LLQKKIRR G ++ Sbjct: 143 ANGGGYYHYSYSVVRGCDRIVPIDIYVPGCPPTAEALLYGVMLLQKKIRRTGTIE 197 >gi|329850728|ref|ZP_08265573.1| NADH-quinone oxidoreductase subunit B [Asticcacaulis biprosthecum C19] gi|328841043|gb|EGF90614.1| NADH-quinone oxidoreductase subunit B [Asticcacaulis biprosthecum C19] Length = 184 Score = 295 bits (754), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 133/162 (82%), Positives = 149/162 (91%) Query: 23 DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82 D F +S+E+ KGFLV S D ++TWARTGSLMWMTFGLACCAVEMMQASMPRYD+ERF Sbjct: 22 DKFFESVSAELDAKGFLVASADDVITWARTGSLMWMTFGLACCAVEMMQASMPRYDMERF 81 Query: 83 GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142 G APRASPRQSD+MIVAGTLTNKMA ALR+VYDQMP+PRYV+SMGSCANGGGYYHYSYSV Sbjct: 82 GMAPRASPRQSDLMIVAGTLTNKMAPALRKVYDQMPDPRYVLSMGSCANGGGYYHYSYSV 141 Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 VRGCDRIVPVD+YVPGCPP+AEAL+YG+L LQKKIRR GN++ Sbjct: 142 VRGCDRIVPVDVYVPGCPPSAEALLYGLLQLQKKIRRTGNIR 183 >gi|91977356|ref|YP_570015.1| NADH dehydrogenase subunit B [Rhodopseudomonas palustris BisB5] gi|122969140|sp|Q135X5|NUOB2_RHOPS RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName: Full=NADH dehydrogenase I subunit B 2; AltName: Full=NDH-1 subunit B 2 gi|91683812|gb|ABE40114.1| NADH-quinone oxidoreductase, B subunit [Rhodopseudomonas palustris BisB5] Length = 199 Score = 295 bits (754), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 136/175 (77%), Positives = 151/175 (86%) Query: 10 IISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEM 69 II + + D F ++ E++ KGF V + D L+TWARTGSLMWMTFGLACCAVEM Sbjct: 24 IIDPNTGKPVGADDPFFLGVNRELSDKGFFVAATDDLITWARTGSLMWMTFGLACCAVEM 83 Query: 70 MQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSC 129 MQ SMPRYD ERFGFAPRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSC Sbjct: 84 MQLSMPRYDAERFGFAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSC 143 Query: 130 ANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 ANGGGYYHYSYSVVRGCDRIVP+DIYVPGCPPTAEAL+YG++LLQKKIRR G ++ Sbjct: 144 ANGGGYYHYSYSVVRGCDRIVPIDIYVPGCPPTAEALLYGVMLLQKKIRRTGTIE 198 >gi|90423901|ref|YP_532271.1| NADH dehydrogenase subunit B [Rhodopseudomonas palustris BisB18] gi|122476336|sp|Q215I4|NUOB1_RHOPB RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName: Full=NADH dehydrogenase I subunit B 1; AltName: Full=NDH-1 subunit B 1 gi|90105915|gb|ABD87952.1| NADH-quinone oxidoreductase, B subunit [Rhodopseudomonas palustris BisB18] Length = 201 Score = 294 bits (753), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 133/162 (82%), Positives = 147/162 (90%) Query: 23 DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82 D F +++E+ KGF V + D L+TWARTGSLMWMTFGLACCAVEMMQ SMPRYD ERF Sbjct: 39 DRFFLEVNNELADKGFFVAATDDLITWARTGSLMWMTFGLACCAVEMMQMSMPRYDAERF 98 Query: 83 GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142 GFAPRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSY+V Sbjct: 99 GFAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYAV 158 Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 VRGCDRIVP+DIYVPGCPPTAEAL+YG++LLQKKIRR G ++ Sbjct: 159 VRGCDRIVPIDIYVPGCPPTAEALLYGVMLLQKKIRRTGTIE 200 >gi|304391399|ref|ZP_07373341.1| NADH-quinone oxidoreductase subunit b 1 [Ahrensia sp. R2A130] gi|303295628|gb|EFL89986.1| NADH-quinone oxidoreductase subunit b 1 [Ahrensia sp. R2A130] Length = 191 Score = 294 bits (753), Expect = 4e-78, Method: Compositional matrix adjust. Identities = 134/162 (82%), Positives = 147/162 (90%) Query: 23 DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82 D F I++E+ KGF+VT+ D L+ W+RTGSLMWMTFGLACCAVEMMQ SMPRYD ERF Sbjct: 29 DPFFGEINNELADKGFIVTTTDDLINWSRTGSLMWMTFGLACCAVEMMQMSMPRYDSERF 88 Query: 83 GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142 G APRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSV Sbjct: 89 GIAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSV 148 Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 VRGCDRIVPVDIYVPGCPP+AEAL+YG+LLLQKKIRR G ++ Sbjct: 149 VRGCDRIVPVDIYVPGCPPSAEALLYGVLLLQKKIRRTGTIE 190 >gi|114707368|ref|ZP_01440265.1| NADH-ubiquinone oxidoreductase chain B protein [Fulvimarina pelagi HTCC2506] gi|114537249|gb|EAU40376.1| NADH-ubiquinone oxidoreductase chain B protein [Fulvimarina pelagi HTCC2506] Length = 194 Score = 293 bits (750), Expect = 8e-78, Method: Compositional matrix adjust. Identities = 133/162 (82%), Positives = 146/162 (90%) Query: 23 DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82 D + I+ E+ KGFLVTS D L+ WAR GSLMWMTFGLACCAVEMMQ SMPRYD ERF Sbjct: 32 DPFVTAINDELADKGFLVTSTDDLIQWARNGSLMWMTFGLACCAVEMMQMSMPRYDAERF 91 Query: 83 GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142 GFAPRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSV Sbjct: 92 GFAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSV 151 Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 VRGCDR++PVDIYVPGCPP+AEAL+YG++LLQKKIRR G ++ Sbjct: 152 VRGCDRVIPVDIYVPGCPPSAEALLYGVMLLQKKIRRTGTIE 193 >gi|315499789|ref|YP_004088592.1| NADH-quinone oxidoreductase, b subunit [Asticcacaulis excentricus CB 48] gi|315417801|gb|ADU14441.1| NADH-quinone oxidoreductase, B subunit [Asticcacaulis excentricus CB 48] Length = 186 Score = 293 bits (749), Expect = 8e-78, Method: Compositional matrix adjust. Identities = 133/162 (82%), Positives = 148/162 (91%) Query: 23 DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82 D F +SSE+ KGFLV S D ++TWARTGSLMWMTFGLACCAVEMMQASMPRYD+ERF Sbjct: 24 DKFFEAVSSELNEKGFLVASADDVITWARTGSLMWMTFGLACCAVEMMQASMPRYDMERF 83 Query: 83 GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142 G APRASPRQSD+MIVAGTLTNKMA ALR+VYDQMP+PRYV+SMGSCANGGGYYHYSYSV Sbjct: 84 GMAPRASPRQSDLMIVAGTLTNKMAPALRKVYDQMPDPRYVLSMGSCANGGGYYHYSYSV 143 Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 VRGCDRIVPVD+YVPGCPP+AEAL+YG+L LQKKIRR G ++ Sbjct: 144 VRGCDRIVPVDVYVPGCPPSAEALLYGLLQLQKKIRRNGTIR 185 >gi|86358166|ref|YP_470058.1| NADH dehydrogenase subunit B [Rhizobium etli CFN 42] gi|123511609|sp|Q2K755|NUOB2_RHIEC RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName: Full=NADH dehydrogenase I subunit B 2; AltName: Full=NDH-1 subunit B 2 gi|86282268|gb|ABC91331.1| NADH-ubiquinone oxidoreductase chain B protein [Rhizobium etli CFN 42] Length = 186 Score = 293 bits (749), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 134/162 (82%), Positives = 149/162 (91%) Query: 23 DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82 D I++E+ KGFLVTS D+L+TWARTGSLMWMTFGLACCA+EMMQ SMPRYD+ERF Sbjct: 24 DPTMGTINAELADKGFLVTSTDELITWARTGSLMWMTFGLACCAIEMMQMSMPRYDIERF 83 Query: 83 GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142 G APRASPRQSD+MIVAGTL NKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSV Sbjct: 84 GVAPRASPRQSDLMIVAGTLCNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSV 143 Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 VRGCDR+VPVDIYVPGCPPTAEAL+YGILLLQ+KIRR G+++ Sbjct: 144 VRGCDRVVPVDIYVPGCPPTAEALLYGILLLQRKIRRNGSIE 185 >gi|154253664|ref|YP_001414488.1| NADH-quinone oxidoreductase subunit B [Parvibaculum lavamentivorans DS-1] gi|238065187|sp|A7HY48|NUOB_PARL1 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|154157614|gb|ABS64831.1| NADH-quinone oxidoreductase, B subunit [Parvibaculum lavamentivorans DS-1] Length = 191 Score = 292 bits (747), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 139/189 (73%), Positives = 157/189 (83%), Gaps = 6/189 (3%) Query: 1 MGLTTVNQKI------ISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGS 54 MG+T ++ I + +S + DA F + + ++ KGF++T+VD L+ W+RTGS Sbjct: 1 MGVTNPDKVISNTPGVVDPATSVPAWQDDAFFRQATDQLADKGFVLTTVDDLINWSRTGS 60 Query: 55 LMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVY 114 LMWMTFGLACCAVEMMQ SMPRYD ERFG APRASPRQSDVMIVAGTLTNKMA ALR+VY Sbjct: 61 LMWMTFGLACCAVEMMQTSMPRYDAERFGVAPRASPRQSDVMIVAGTLTNKMAPALRKVY 120 Query: 115 DQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQ 174 DQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQ Sbjct: 121 DQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILALQ 180 Query: 175 KKIRRVGNV 183 KKIRR G + Sbjct: 181 KKIRRTGTL 189 >gi|83858414|ref|ZP_00951936.1| NADH dehydrogenase beta subunit [Oceanicaulis alexandrii HTCC2633] gi|83853237|gb|EAP91089.1| NADH dehydrogenase beta subunit [Oceanicaulis alexandrii HTCC2633] Length = 187 Score = 291 bits (746), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 135/165 (81%), Positives = 147/165 (89%) Query: 20 EKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDL 79 +K D F +S + KGFLV + D L+TWARTGSLMWMTFGLACCAVEMMQASMPRYD+ Sbjct: 22 KKHDPFFDGVSDALADKGFLVAAADDLITWARTGSLMWMTFGLACCAVEMMQASMPRYDV 81 Query: 80 ERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS 139 ER G APR SPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYS Sbjct: 82 ERLGAAPRGSPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYS 141 Query: 140 YSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 YSVVRGCDRIVP+DIYVPGCPPTAEAL+YGIL LQKKIRR G+++ Sbjct: 142 YSVVRGCDRIVPIDIYVPGCPPTAEALVYGILQLQKKIRREGSIE 186 >gi|241518517|ref|YP_002979145.1| NADH-quinone oxidoreductase, B subunit [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240862930|gb|ACS60594.1| NADH-quinone oxidoreductase, B subunit [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 185 Score = 291 bits (745), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 134/162 (82%), Positives = 147/162 (90%) Query: 23 DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82 D I++E+ KGFLVTS D+L+TWARTGSLMWMTFGLACCA+EMMQ SMPRYD+ERF Sbjct: 23 DPTMGMINAELADKGFLVTSTDELITWARTGSLMWMTFGLACCAIEMMQMSMPRYDVERF 82 Query: 83 GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142 G APR SPRQSD+MIVAGTL NKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSV Sbjct: 83 GVAPRGSPRQSDLMIVAGTLCNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142 Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 VRGCDR+VPVDIYVPGCPPTAEAL+YGILLLQKKIRR G ++ Sbjct: 143 VRGCDRVVPVDIYVPGCPPTAEALLYGILLLQKKIRRNGTIE 184 >gi|218463554|ref|ZP_03503645.1| NADH dehydrogenase subunit B [Rhizobium etli Kim 5] Length = 186 Score = 291 bits (744), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 134/162 (82%), Positives = 148/162 (91%) Query: 23 DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82 D I++E+ KGFLVTS D+L+TWARTGSLMWMTFGLACCA+EMMQ SMPRYD+ERF Sbjct: 24 DPMMGTINAELADKGFLVTSTDELITWARTGSLMWMTFGLACCAIEMMQMSMPRYDIERF 83 Query: 83 GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142 G APR SPRQSD+MIVAGTL NKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSV Sbjct: 84 GVAPRGSPRQSDLMIVAGTLCNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSV 143 Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 VRGCDRIVPVDIYVPGCPPTAEAL+YGILLLQ+KIRR G+++ Sbjct: 144 VRGCDRIVPVDIYVPGCPPTAEALLYGILLLQRKIRRNGSIE 185 >gi|296444795|ref|ZP_06886758.1| NADH-quinone oxidoreductase, B subunit [Methylosinus trichosporium OB3b] gi|296257743|gb|EFH04807.1| NADH-quinone oxidoreductase, B subunit [Methylosinus trichosporium OB3b] Length = 194 Score = 290 bits (743), Expect = 4e-77, Method: Compositional matrix adjust. Identities = 138/193 (71%), Positives = 160/193 (82%), Gaps = 9/193 (4%) Query: 1 MGLTTVNQKIISGQSSCSL------EKVDAD---FSRISSEITHKGFLVTSVDQLVTWAR 51 MGL T + S+ L + V AD + ++ E+ KGF+VT+ D ++ WAR Sbjct: 1 MGLITRQSPTLVAPSAKGLVDPRTGKPVGADDPFYLGLNDELADKGFVVTATDDIINWAR 60 Query: 52 TGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALR 111 TGSLMWMTFGLACCAVEM+QA+MPRYDLERFGFAPRASPRQSDV+I+AGTLTNKMA ALR Sbjct: 61 TGSLMWMTFGLACCAVEMIQAAMPRYDLERFGFAPRASPRQSDVIIIAGTLTNKMAPALR 120 Query: 112 RVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171 +VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI+PVDIYVPGCPP+AEAL+YG+L Sbjct: 121 KVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPSAEALVYGVL 180 Query: 172 LLQKKIRRVGNVK 184 LLQKKIRR G ++ Sbjct: 181 LLQKKIRRSGTIE 193 >gi|323138146|ref|ZP_08073219.1| NADH-quinone oxidoreductase, B subunit [Methylocystis sp. ATCC 49242] gi|322396608|gb|EFX99136.1| NADH-quinone oxidoreductase, B subunit [Methylocystis sp. ATCC 49242] Length = 194 Score = 290 bits (743), Expect = 5e-77, Method: Compositional matrix adjust. Identities = 130/162 (80%), Positives = 148/162 (91%) Query: 23 DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82 D F +I+ E+ KGF VT+ D ++ WARTGSLMWMTFGLACCAVEM+QA+MPRYDLERF Sbjct: 32 DPFFLQINEELADKGFFVTATDDVINWARTGSLMWMTFGLACCAVEMIQAAMPRYDLERF 91 Query: 83 GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142 GFAPRASPRQSD +I+AGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSV Sbjct: 92 GFAPRASPRQSDCIIIAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSV 151 Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 VRGCDRI+PVD+YVPGCPP+AEAL+YG+LLLQKKIRR G ++ Sbjct: 152 VRGCDRIIPVDVYVPGCPPSAEALVYGMLLLQKKIRRTGTIE 193 >gi|262277300|ref|ZP_06055093.1| NADH-quinone oxidoreductase subunit b (nadhdehydrogenase i subunit b) (ndh-1 subunit b) [alpha proteobacterium HIMB114] gi|262224403|gb|EEY74862.1| NADH-quinone oxidoreductase subunit b (nadhdehydrogenase i subunit b) (ndh-1 subunit b) [alpha proteobacterium HIMB114] Length = 173 Score = 290 bits (741), Expect = 8e-77, Method: Compositional matrix adjust. Identities = 132/166 (79%), Positives = 148/166 (89%) Query: 19 LEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78 L+++ +F ++ E + KGF+ + D L+ WARTGSL WMTFGLACCAVEMMQASMPRYD Sbjct: 7 LDQIPQEFREVAEEFSEKGFVTIASDTLINWARTGSLHWMTFGLACCAVEMMQASMPRYD 66 Query: 79 LERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY 138 LERFG APRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHY Sbjct: 67 LERFGAAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHY 126 Query: 139 SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 SYSVVRGCDRIVPVDIYVPGCPP+AEAL+Y IL LQKKIRR G+++ Sbjct: 127 SYSVVRGCDRIVPVDIYVPGCPPSAEALLYAILQLQKKIRREGSLQ 172 >gi|13471406|ref|NP_102972.1| NADH dehydrogenase subunit B [Mesorhizobium loti MAFF303099] gi|14022148|dbj|BAB48758.1| NADH-ubiquinone dehydrogenase chain B 1 [Mesorhizobium loti MAFF303099] Length = 200 Score = 289 bits (740), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 135/177 (76%), Positives = 153/177 (86%) Query: 8 QKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAV 67 + II + + + D F I++E+ KGFLVTS + L+TWAR+GSLM+MTFGLACCAV Sbjct: 23 KGIIDPNTGRPVGEDDPFFLEINNELADKGFLVTSTEALITWARSGSLMFMTFGLACCAV 82 Query: 68 EMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMG 127 EM+ SMPRYD ERFG APRASPRQSD+MIVAGTLTNKMA ALR+VYDQMPEPRYVISMG Sbjct: 83 EMIHTSMPRYDSERFGVAPRASPRQSDIMIVAGTLTNKMAPALRKVYDQMPEPRYVISMG 142 Query: 128 SCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 SCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP+AEAL+YGILLLQKKIRR G ++ Sbjct: 143 SCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPSAEALLYGILLLQKKIRRTGTIE 199 >gi|260462231|ref|ZP_05810475.1| NADH-quinone oxidoreductase, B subunit [Mesorhizobium opportunistum WSM2075] gi|259032091|gb|EEW33358.1| NADH-quinone oxidoreductase, B subunit [Mesorhizobium opportunistum WSM2075] Length = 193 Score = 289 bits (739), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 134/177 (75%), Positives = 153/177 (86%) Query: 8 QKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAV 67 + II + + + D F I++E+ KGFLVTS + L+TWAR+GSLM+MTFGLACCAV Sbjct: 16 KGIIDPNTGKPVGQDDPFFLEINNELADKGFLVTSTEALITWARSGSLMFMTFGLACCAV 75 Query: 68 EMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMG 127 EM+ SMPRYD ERFG APRASPRQSD+MIVAGTLTNKMA ALR+VYDQMPEPRYVISMG Sbjct: 76 EMIHTSMPRYDSERFGVAPRASPRQSDIMIVAGTLTNKMAPALRKVYDQMPEPRYVISMG 135 Query: 128 SCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 SCANGGGYYHYSYSVVRGCDR+VPVDIYVPGCPP+AEAL+YGILLLQKKIRR G ++ Sbjct: 136 SCANGGGYYHYSYSVVRGCDRVVPVDIYVPGCPPSAEALLYGILLLQKKIRRTGTIE 192 >gi|319782982|ref|YP_004142458.1| NADH-quinone oxidoreductase, subunit beta [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|218528069|sp|Q98KQ6|NUOB_RHILO RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|317168870|gb|ADV12408.1| NADH-quinone oxidoreductase, B subunit [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 193 Score = 289 bits (739), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 135/177 (76%), Positives = 153/177 (86%) Query: 8 QKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAV 67 + II + + + D F I++E+ KGFLVTS + L+TWAR+GSLM+MTFGLACCAV Sbjct: 16 KGIIDPNTGRPVGEDDPFFLEINNELADKGFLVTSTEALITWARSGSLMFMTFGLACCAV 75 Query: 68 EMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMG 127 EM+ SMPRYD ERFG APRASPRQSD+MIVAGTLTNKMA ALR+VYDQMPEPRYVISMG Sbjct: 76 EMIHTSMPRYDSERFGVAPRASPRQSDIMIVAGTLTNKMAPALRKVYDQMPEPRYVISMG 135 Query: 128 SCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 SCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP+AEAL+YGILLLQKKIRR G ++ Sbjct: 136 SCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPSAEALLYGILLLQKKIRRTGTIE 192 >gi|330813983|ref|YP_004358222.1| NADH-ubiquinone oxidoreductase chain B [Candidatus Pelagibacter sp. IMCC9063] gi|327487078|gb|AEA81483.1| NADH-ubiquinone oxidoreductase chain B [Candidatus Pelagibacter sp. IMCC9063] Length = 175 Score = 288 bits (738), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 132/167 (79%), Positives = 147/167 (88%) Query: 18 SLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRY 77 L+ + +F ++ E T KGF+ D+L+ WARTGSL WMTFGLACCAVEMMQ SMPRY Sbjct: 8 KLKDIPKEFREVAEEFTEKGFVTIGSDRLINWARTGSLHWMTFGLACCAVEMMQTSMPRY 67 Query: 78 DLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137 DLERFG APRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYH Sbjct: 68 DLERFGAAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYH 127 Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 YSYSVVRGCD+IVPVDIYVPGCPP+AEAL+YGIL LQKKIRR G+++ Sbjct: 128 YSYSVVRGCDKIVPVDIYVPGCPPSAEALLYGILQLQKKIRREGSLQ 174 >gi|222148275|ref|YP_002549232.1| NADH dehydrogenase subunit B [Agrobacterium vitis S4] gi|238065049|sp|B9JVE6|NUOB_AGRVS RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|221735263|gb|ACM36226.1| NADH ubiqionone oxidoreductase chain B [Agrobacterium vitis S4] Length = 195 Score = 288 bits (737), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 134/160 (83%), Positives = 145/160 (90%), Gaps = 1/160 (0%) Query: 26 FSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVE-MMQASMPRYDLERFGF 84 F I+ E+ KGFLVTS L+TWARTGSLMWM FGLACCAVE +MQAS PRYD+ERFG Sbjct: 35 FGEINDELADKGFLVTSTQALITWARTGSLMWMQFGLACCAVEGLMQASGPRYDMERFGV 94 Query: 85 APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR 144 APRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSVVR Sbjct: 95 APRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR 154 Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 GCDR+VPVDIYVPGCPPTAEAL+YG+LLLQKKIRR G ++ Sbjct: 155 GCDRVVPVDIYVPGCPPTAEALLYGVLLLQKKIRRTGTIE 194 >gi|302383046|ref|YP_003818869.1| NADH-quinone oxidoreductase subunit beta [Brevundimonas subvibrioides ATCC 15264] gi|302193674|gb|ADL01246.1| NADH-quinone oxidoreductase, B subunit [Brevundimonas subvibrioides ATCC 15264] Length = 193 Score = 288 bits (737), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 131/161 (81%), Positives = 145/161 (90%) Query: 23 DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82 D F +++EI +GFL S+D ++ WARTGSLMWMTFGLACCAVEM+QASMPRYDLERF Sbjct: 31 DKFFEAVNTEIAEQGFLTASLDDVINWARTGSLMWMTFGLACCAVEMIQASMPRYDLERF 90 Query: 83 GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142 G APRASPRQSD+MIVAGTLTNKMA ALR+VYDQMP+PRYV+SMGSCANGGGYYHYSYSV Sbjct: 91 GMAPRASPRQSDLMIVAGTLTNKMAPALRKVYDQMPDPRYVLSMGSCANGGGYYHYSYSV 150 Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 VRGCDRIVPVD YVPGCPPTAEALIYG+L LQKKIRR G + Sbjct: 151 VRGCDRIVPVDAYVPGCPPTAEALIYGLLQLQKKIRRTGTI 191 >gi|260428201|ref|ZP_05782180.1| NADH-quinone oxidoreductase subunit b [Citreicella sp. SE45] gi|260422693|gb|EEX15944.1| NADH-quinone oxidoreductase subunit b [Citreicella sp. SE45] Length = 175 Score = 286 bits (732), Expect = 8e-76, Method: Compositional matrix adjust. Identities = 130/155 (83%), Positives = 143/155 (92%) Query: 29 ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88 ++ E+ KGFL+TSVD ++ WARTGSL WMTFGLACCA+EMMQ SMPRYDLERFG APRA Sbjct: 19 LNRELQDKGFLLTSVDDVINWARTGSLHWMTFGLACCAIEMMQTSMPRYDLERFGTAPRA 78 Query: 89 SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 148 SPRQSD+MIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR Sbjct: 79 SPRQSDLMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 138 Query: 149 IVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 IVPVD+YVPGCPPTAEAL+YGI+ LQKKIRR G + Sbjct: 139 IVPVDVYVPGCPPTAEALLYGIMALQKKIRRTGTI 173 >gi|312116344|ref|YP_004013940.1| NADH-quinone oxidoreductase subunit beta [Rhodomicrobium vannielii ATCC 17100] gi|311221473|gb|ADP72841.1| NADH-quinone oxidoreductase, B subunit [Rhodomicrobium vannielii ATCC 17100] Length = 184 Score = 286 bits (731), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 128/160 (80%), Positives = 147/160 (91%) Query: 25 DFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF 84 DF +++++ KGFLVTS + ++ WARTGSLMWMTFGLACCAVEM+Q SMPRYDLERFG Sbjct: 24 DFDGLNAQLADKGFLVTSTEDVINWARTGSLMWMTFGLACCAVEMIQVSMPRYDLERFGT 83 Query: 85 APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR 144 APRASPRQSD+MIVAGTL NKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSVVR Sbjct: 84 APRASPRQSDLMIVAGTLCNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR 143 Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 GCDR+VPVD+Y+PGCPP+AEAL+YGI+LLQKKIRR G ++ Sbjct: 144 GCDRVVPVDVYIPGCPPSAEALLYGIMLLQKKIRRTGTIE 183 >gi|126461943|ref|YP_001043057.1| NADH dehydrogenase subunit B [Rhodobacter sphaeroides ATCC 17029] gi|218528014|sp|A3PIW9|NUOB1_RHOS1 RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName: Full=NADH dehydrogenase I subunit B 1; AltName: Full=NDH-1 subunit B 1 gi|126103607|gb|ABN76285.1| NADH-quinone oxidoreductase, B subunit [Rhodobacter sphaeroides ATCC 17029] Length = 176 Score = 286 bits (731), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 131/161 (81%), Positives = 143/161 (88%) Query: 23 DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82 D D ++ E+ KGFL+T+ + L+ WARTGSL WMTFGLACCAVEMM SMPRYD+ERF Sbjct: 14 DYDTQSLNRELQDKGFLLTTTEDLINWARTGSLHWMTFGLACCAVEMMHTSMPRYDVERF 73 Query: 83 GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142 G APRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSV Sbjct: 74 GVAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSV 133 Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 VRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQ+KIRR G + Sbjct: 134 VRGCDRIVPVDIYVPGCPPTAEALLYGILQLQRKIRRTGTI 174 >gi|149202673|ref|ZP_01879645.1| NADH dehydrogenase subunit B [Roseovarius sp. TM1035] gi|149143955|gb|EDM31989.1| NADH dehydrogenase subunit B [Roseovarius sp. TM1035] Length = 177 Score = 286 bits (731), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 129/155 (83%), Positives = 143/155 (92%) Query: 29 ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88 +++E+ KGFL+TS + ++ WARTGSL WMTFGLACCAVEMM +MPRYD+ERFGFAPRA Sbjct: 21 LNAELQDKGFLLTSTEDIINWARTGSLHWMTFGLACCAVEMMHTAMPRYDVERFGFAPRA 80 Query: 89 SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 148 SPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR Sbjct: 81 SPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 140 Query: 149 IVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 IVPVDIYVPGCPPTAEAL+YGIL LQ+KIRR G + Sbjct: 141 IVPVDIYVPGCPPTAEALVYGILQLQRKIRRTGTI 175 >gi|77463071|ref|YP_352575.1| NADH dehydrogenase subunit B [Rhodobacter sphaeroides 2.4.1] gi|221638927|ref|YP_002525189.1| NADH dehydrogenase subunit B [Rhodobacter sphaeroides KD131] gi|332557944|ref|ZP_08412266.1| NADH dehydrogenase subunit B [Rhodobacter sphaeroides WS8N] gi|123592237|sp|Q3J3G0|NUOB1_RHOS4 RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName: Full=NADH dehydrogenase I subunit B 1; AltName: Full=NDH-1 subunit B 1 gi|238065016|sp|B9KQW1|NUOB1_RHOSK RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName: Full=NADH dehydrogenase I subunit B 1; AltName: Full=NDH-1 subunit B 1 gi|77387489|gb|ABA78674.1| NADH dehydrogenase-ubiquinone oxidoreductase, chain B [Rhodobacter sphaeroides 2.4.1] gi|221159708|gb|ACM00688.1| NADH dehydrogenase I, B subunit [Rhodobacter sphaeroides KD131] gi|332275656|gb|EGJ20971.1| NADH dehydrogenase subunit B [Rhodobacter sphaeroides WS8N] Length = 174 Score = 285 bits (730), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 131/161 (81%), Positives = 143/161 (88%) Query: 23 DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82 D D ++ E+ KGFL+T+ + L+ WARTGSL WMTFGLACCAVEMM SMPRYD+ERF Sbjct: 12 DYDTQSLNRELQDKGFLLTTTEDLINWARTGSLHWMTFGLACCAVEMMHTSMPRYDVERF 71 Query: 83 GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142 G APRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSV Sbjct: 72 GVAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSV 131 Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 VRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQ+KIRR G + Sbjct: 132 VRGCDRIVPVDIYVPGCPPTAEALLYGILQLQRKIRRTGTI 172 >gi|304322207|ref|YP_003855850.1| NADH dehydrogenase subunit beta [Parvularcula bermudensis HTCC2503] gi|303301109|gb|ADM10708.1| NADH dehydrogenase beta subunit [Parvularcula bermudensis HTCC2503] Length = 226 Score = 285 bits (729), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 128/162 (79%), Positives = 144/162 (88%) Query: 23 DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82 D F+ ++ E+ +GF+ D ++ WARTGSLMWMTFGLACCAVEMMQASMPRYD+ERF Sbjct: 64 DPFFTSLNRELADQGFITAPADAVINWARTGSLMWMTFGLACCAVEMMQASMPRYDMERF 123 Query: 83 GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142 G APRASPRQSD+MIVAGTLTNKMA ALR+VYDQMP PRYV+SMGSCANGGGYYHYSYSV Sbjct: 124 GMAPRASPRQSDLMIVAGTLTNKMAPALRKVYDQMPAPRYVVSMGSCANGGGYYHYSYSV 183 Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 VRGCDRIVPVDIYVPGCPPTAEALIYG+L LQKK+RR G ++ Sbjct: 184 VRGCDRIVPVDIYVPGCPPTAEALIYGLLQLQKKMRREGTIR 225 >gi|56697623|ref|YP_167992.1| NADH dehydrogenase subunit B [Ruegeria pomeroyi DSS-3] gi|56679360|gb|AAV96026.1| NADH dehydrogenase I, B subunit [Ruegeria pomeroyi DSS-3] Length = 184 Score = 285 bits (729), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 130/174 (74%), Positives = 151/174 (86%), Gaps = 1/174 (0%) Query: 10 IISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEM 69 +++G ++ ++K + +++E+ KGFL+TS + ++ WARTGSL WMTFGLACCAVEM Sbjct: 10 VMTGANTAGVDK-EVATQALNAELQDKGFLLTSTEDIINWARTGSLHWMTFGLACCAVEM 68 Query: 70 MQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSC 129 M SMPRYD ERFG APRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSC Sbjct: 69 MHTSMPRYDAERFGIAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSC 128 Query: 130 ANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 ANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG+L LQ+KIRR G + Sbjct: 129 ANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGLLQLQRKIRRTGTI 182 >gi|197105267|ref|YP_002130644.1| NADH dehydrogenase I, B subunit [Phenylobacterium zucineum HLK1] gi|238065189|sp|B4RCM8|NUOB_PHEZH RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|196478687|gb|ACG78215.1| NADH dehydrogenase I, B subunit [Phenylobacterium zucineum HLK1] Length = 193 Score = 285 bits (728), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 129/161 (80%), Positives = 143/161 (88%) Query: 23 DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82 D F +S + KGF+ + D L+TWARTGSLMWMTFGLACCAVEMMQASMPRYDLER+ Sbjct: 31 DPYFDGVSQRLADKGFVTAAADDLITWARTGSLMWMTFGLACCAVEMMQASMPRYDLERY 90 Query: 83 GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142 GFAPRASPRQSDVMIVAGTL NKMA ALR+VYDQMPEPRYVISMGSCANGGGYY++SYS Sbjct: 91 GFAPRASPRQSDVMIVAGTLVNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYYFSYST 150 Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 VRGCDR+VPVD+YVPGCPPTAEAL+YG+L LQKKIRR G + Sbjct: 151 VRGCDRVVPVDVYVPGCPPTAEALVYGVLQLQKKIRRTGTI 191 >gi|218528064|sp|Q5LPR4|NUOB_SILPO RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B Length = 177 Score = 285 bits (728), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 130/174 (74%), Positives = 151/174 (86%), Gaps = 1/174 (0%) Query: 10 IISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEM 69 +++G ++ ++K + +++E+ KGFL+TS + ++ WARTGSL WMTFGLACCAVEM Sbjct: 3 VMTGANTAGVDK-EVATQALNAELQDKGFLLTSTEDIINWARTGSLHWMTFGLACCAVEM 61 Query: 70 MQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSC 129 M SMPRYD ERFG APRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSC Sbjct: 62 MHTSMPRYDAERFGIAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSC 121 Query: 130 ANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 ANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG+L LQ+KIRR G + Sbjct: 122 ANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGLLQLQRKIRRTGTI 175 >gi|149914578|ref|ZP_01903108.1| NADH dehydrogenase subunit B [Roseobacter sp. AzwK-3b] gi|149811371|gb|EDM71206.1| NADH dehydrogenase subunit B [Roseobacter sp. AzwK-3b] Length = 177 Score = 285 bits (728), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 130/155 (83%), Positives = 142/155 (91%) Query: 29 ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88 ++ E+ KGFLVTS + ++ WARTGSL WMTFGLACCAVEMM ASMPRYDLERFG APRA Sbjct: 21 LNRELQDKGFLVTSTEDIINWARTGSLHWMTFGLACCAVEMMHASMPRYDLERFGTAPRA 80 Query: 89 SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 148 SPRQSD+MIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR Sbjct: 81 SPRQSDLMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 140 Query: 149 IVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 IVPVDIYVPGCPPTAEAL+YGI+ LQ+KIRR G + Sbjct: 141 IVPVDIYVPGCPPTAEALVYGIMQLQRKIRRTGTI 175 >gi|114764719|ref|ZP_01443904.1| NADH dehydrogenase beta subunit [Pelagibaca bermudensis HTCC2601] gi|114542919|gb|EAU45940.1| NADH dehydrogenase beta subunit [Roseovarius sp. HTCC2601] Length = 206 Score = 285 bits (728), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 128/155 (82%), Positives = 143/155 (92%) Query: 29 ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88 ++ E++ KGFL+TSVD ++ WARTGSL WMTFGLACCA+EMM SMPRYDLERFG APRA Sbjct: 50 LNRELSDKGFLLTSVDDVINWARTGSLHWMTFGLACCAIEMMHTSMPRYDLERFGSAPRA 109 Query: 89 SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 148 SPRQSD+MIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR Sbjct: 110 SPRQSDLMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 169 Query: 149 IVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 IVPVD+YVPGCPPTAEAL+YG++ LQKKIRR G + Sbjct: 170 IVPVDVYVPGCPPTAEALLYGLMALQKKIRRTGTI 204 >gi|85703212|ref|ZP_01034316.1| NADH dehydrogenase beta subunit [Roseovarius sp. 217] gi|85672140|gb|EAQ26997.1| NADH dehydrogenase beta subunit [Roseovarius sp. 217] Length = 174 Score = 285 bits (728), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 128/155 (82%), Positives = 143/155 (92%) Query: 29 ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88 +++E+ KG+L+TS + ++ WARTGSL WMTFGLACCAVEMM +MPRYD+ERFGFAPRA Sbjct: 18 LNAELQDKGYLLTSTEDIINWARTGSLHWMTFGLACCAVEMMHTAMPRYDVERFGFAPRA 77 Query: 89 SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 148 SPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR Sbjct: 78 SPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 137 Query: 149 IVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 IVPVDIYVPGCPPTAEAL+YGIL LQ+KIRR G + Sbjct: 138 IVPVDIYVPGCPPTAEALVYGILQLQRKIRRTGTI 172 >gi|254461551|ref|ZP_05074967.1| NADH dehydrogenase-ubiquinone oxidoreductase, chain b [Rhodobacterales bacterium HTCC2083] gi|206678140|gb|EDZ42627.1| NADH dehydrogenase-ubiquinone oxidoreductase, chain b [Rhodobacteraceae bacterium HTCC2083] Length = 181 Score = 284 bits (727), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 129/161 (80%), Positives = 144/161 (89%) Query: 23 DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82 D + +++E+ KGFL+TS D ++ WARTGSL WMTFGLACCAVEMM SMPRYDLERF Sbjct: 19 DHGTAALNAELADKGFLLTSTDDIINWARTGSLHWMTFGLACCAVEMMHTSMPRYDLERF 78 Query: 83 GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142 G APRASPRQSD+MIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSV Sbjct: 79 GTAPRASPRQSDLMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSV 138 Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 VRGCDRIVPVDIYVPGCPPTAEAL+YGI+ LQ+K+RR G + Sbjct: 139 VRGCDRIVPVDIYVPGCPPTAEALLYGIMQLQRKMRRTGTI 179 >gi|3025802|gb|AAC12755.1| NADH-ubiqionone oxidoreductase subunit NuoB [Sinorhizobium meliloti] Length = 165 Score = 284 bits (727), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 132/158 (83%), Positives = 143/158 (90%), Gaps = 1/158 (0%) Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAP 86 I++E+ KGFLVTS D+L+ WARTGSLMW LACCAVEMMQ SMPRYD ERFGFAP Sbjct: 7 EINNELADKGFLVTSTDELINWARTGSLMWNELSVLACCAVEMMQMSMPRYDAERFGFAP 66 Query: 87 RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGC 146 RASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGC Sbjct: 67 RASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGC 126 Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 DR+VPVDIYVPGCPPTAEAL+YG+LLLQKKIRR G ++ Sbjct: 127 DRVVPVDIYVPGCPPTAEALLYGVLLLQKKIRRTGTIE 164 >gi|146278043|ref|YP_001168202.1| NADH dehydrogenase subunit B [Rhodobacter sphaeroides ATCC 17025] gi|218528015|sp|A4WU33|NUOB2_RHOS5 RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName: Full=NADH dehydrogenase I subunit B 2; AltName: Full=NDH-1 subunit B 2 gi|145556284|gb|ABP70897.1| NADH-quinone oxidoreductase, B subunit [Rhodobacter sphaeroides ATCC 17025] Length = 174 Score = 284 bits (727), Expect = 4e-75, Method: Compositional matrix adjust. Identities = 130/161 (80%), Positives = 144/161 (89%) Query: 23 DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82 D D + ++ E+ KGFL+T+ + L+ WARTGSL WMTFGLACCAVEMM SMPRYD+ERF Sbjct: 12 DYDTAGLNRELQDKGFLLTTTEDLINWARTGSLHWMTFGLACCAVEMMHTSMPRYDVERF 71 Query: 83 GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142 G APRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSV Sbjct: 72 GVAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSV 131 Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 VRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQ++IRR G + Sbjct: 132 VRGCDRIVPVDIYVPGCPPTAEALLYGILQLQRRIRRTGTI 172 >gi|163746197|ref|ZP_02153556.1| NADH dehydrogenase subunit B [Oceanibulbus indolifex HEL-45] gi|161380942|gb|EDQ05352.1| NADH dehydrogenase subunit B [Oceanibulbus indolifex HEL-45] Length = 204 Score = 284 bits (727), Expect = 4e-75, Method: Compositional matrix adjust. Identities = 129/161 (80%), Positives = 144/161 (89%) Query: 23 DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82 D +++E+ KGFL+TS + ++ WARTGSL WMTFGLACCAVEMM +SMPRYDLERF Sbjct: 42 DVATHSLNAELQDKGFLLTSTEDIINWARTGSLHWMTFGLACCAVEMMHSSMPRYDLERF 101 Query: 83 GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142 G APRASPRQSD+MIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSV Sbjct: 102 GTAPRASPRQSDLMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSV 161 Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 VRGCDRIVPVD+YVPGCPPTAEAL+YGIL LQ+KIRR G + Sbjct: 162 VRGCDRIVPVDVYVPGCPPTAEALLYGILQLQRKIRRTGTI 202 >gi|329889333|ref|ZP_08267676.1| NADH-quinone oxidoreductase subunit B [Brevundimonas diminuta ATCC 11568] gi|328844634|gb|EGF94198.1| NADH-quinone oxidoreductase subunit B [Brevundimonas diminuta ATCC 11568] Length = 192 Score = 284 bits (726), Expect = 4e-75, Method: Compositional matrix adjust. Identities = 127/162 (78%), Positives = 146/162 (90%) Query: 23 DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82 D F +++E+ +GFL TS+D ++TWARTGSLMWM+FGLACCAVEM+ SMPR+DLERF Sbjct: 30 DKFFESVNTELGERGFLTTSLDDVITWARTGSLMWMSFGLACCAVEMIHLSMPRFDLERF 89 Query: 83 GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142 G APR SPRQSD+MIVAGTLTNKMA ALR+VYDQMP+PRYVISMGSCANGGGYYHYSYSV Sbjct: 90 GTAPRGSPRQSDLMIVAGTLTNKMAPALRKVYDQMPDPRYVISMGSCANGGGYYHYSYSV 149 Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 VRGCDR+VPVD+YVPGCPPTAEAL+YGIL LQKKIRR G ++ Sbjct: 150 VRGCDRVVPVDVYVPGCPPTAEALLYGILQLQKKIRRTGTIE 191 >gi|254450431|ref|ZP_05063868.1| NADH dehydrogenase i, b subunit [Octadecabacter antarcticus 238] gi|198264837|gb|EDY89107.1| NADH dehydrogenase i, b subunit [Octadecabacter antarcticus 238] Length = 184 Score = 284 bits (726), Expect = 4e-75, Method: Compositional matrix adjust. Identities = 133/171 (77%), Positives = 147/171 (85%), Gaps = 1/171 (0%) Query: 13 GQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQA 72 G ++ +++ D ++ E+T KGFLVTS L+ WARTGSL WMTFGLACCAVEMM Sbjct: 13 GDNTAGVDR-DVATQDLNKELTDKGFLVTSSADLINWARTGSLHWMTFGLACCAVEMMHT 71 Query: 73 SMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANG 132 SMPRYD ERFG APRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANG Sbjct: 72 SMPRYDAERFGIAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANG 131 Query: 133 GGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 GGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQ+K+RR G + Sbjct: 132 GGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQRKMRRTGTI 182 >gi|89067783|ref|ZP_01155237.1| NADH dehydrogenase beta subunit [Oceanicola granulosus HTCC2516] gi|89046753|gb|EAR52808.1| NADH dehydrogenase beta subunit [Oceanicola granulosus HTCC2516] Length = 204 Score = 284 bits (726), Expect = 4e-75, Method: Compositional matrix adjust. Identities = 130/155 (83%), Positives = 141/155 (90%) Query: 29 ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88 ++ E+ KGFLVTS ++ WARTGSL WMTFGLACCAVEMM +SMPRYDLERFG APRA Sbjct: 48 LNRELQDKGFLVTSTADIINWARTGSLHWMTFGLACCAVEMMHSSMPRYDLERFGTAPRA 107 Query: 89 SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 148 SPRQSD+MIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR Sbjct: 108 SPRQSDLMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 167 Query: 149 IVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 IVPVDIYVPGCPPTAEAL+YGIL LQ+KIRR G + Sbjct: 168 IVPVDIYVPGCPPTAEALLYGILQLQRKIRRTGTI 202 >gi|84686428|ref|ZP_01014322.1| NADH dehydrogenase beta subunit [Maritimibacter alkaliphilus HTCC2654] gi|84665611|gb|EAQ12087.1| NADH dehydrogenase beta subunit [Rhodobacterales bacterium HTCC2654] Length = 174 Score = 284 bits (726), Expect = 5e-75, Method: Compositional matrix adjust. Identities = 127/156 (81%), Positives = 144/156 (92%) Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87 ++S E+ KGFL+T+ D ++ WARTGSL WMTFGLACCAVEMMQ+SMPRYDLER+G APR Sbjct: 17 QLSDELQDKGFLLTTTDDIINWARTGSLHWMTFGLACCAVEMMQSSMPRYDLERYGTAPR 76 Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCD 147 ASPRQSD+MIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCD Sbjct: 77 ASPRQSDLMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCD 136 Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 R+VPVD+YVPGCPP+AEAL+YGIL LQ+KIRR G + Sbjct: 137 RVVPVDVYVPGCPPSAEALVYGILQLQRKIRRTGTI 172 >gi|126736072|ref|ZP_01751816.1| NADH dehydrogenase beta subunit [Roseobacter sp. CCS2] gi|126714629|gb|EBA11496.1| NADH dehydrogenase beta subunit [Roseobacter sp. CCS2] Length = 176 Score = 284 bits (726), Expect = 5e-75, Method: Compositional matrix adjust. Identities = 131/155 (84%), Positives = 141/155 (90%) Query: 29 ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88 I+SE+ KGFLVTS +V WARTGSL WMTFGLACCAVEMM SMPRYDLERFG APRA Sbjct: 20 INSELQDKGFLVTSTADIVNWARTGSLHWMTFGLACCAVEMMHTSMPRYDLERFGTAPRA 79 Query: 89 SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 148 SPRQSD+MIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR Sbjct: 80 SPRQSDLMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 139 Query: 149 IVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 IVPVD+YVPGCPPTAEAL+YGIL LQ+K+RR G + Sbjct: 140 IVPVDVYVPGCPPTAEALLYGILQLQRKMRRTGTI 174 >gi|254436528|ref|ZP_05050022.1| NADH-quinone oxidoreductase, B subunit subfamily [Octadecabacter antarcticus 307] gi|198251974|gb|EDY76288.1| NADH-quinone oxidoreductase, B subunit subfamily [Octadecabacter antarcticus 307] Length = 177 Score = 284 bits (726), Expect = 5e-75, Method: Compositional matrix adjust. Identities = 133/171 (77%), Positives = 146/171 (85%), Gaps = 1/171 (0%) Query: 13 GQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQA 72 G ++ ++ D ++ E+T KGFLVTS L+ WARTGSL WMTFGLACCAVEMM Sbjct: 6 GDNTAGFDR-DVATQDLNHELTDKGFLVTSSADLINWARTGSLHWMTFGLACCAVEMMHT 64 Query: 73 SMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANG 132 SMPRYD ERFG APRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANG Sbjct: 65 SMPRYDAERFGIAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANG 124 Query: 133 GGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 GGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQ+K+RR G + Sbjct: 125 GGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQRKMRRTGTI 175 >gi|254486398|ref|ZP_05099603.1| NADH-quinone oxidoreductase chain b [Roseobacter sp. GAI101] gi|214043267|gb|EEB83905.1| NADH-quinone oxidoreductase chain b [Roseobacter sp. GAI101] Length = 178 Score = 283 bits (725), Expect = 5e-75, Method: Compositional matrix adjust. Identities = 130/161 (80%), Positives = 142/161 (88%) Query: 23 DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82 D ++ E+ KGFL+TS + ++ WARTGSL WMTFGLACCAVEMM SMPRYDLERF Sbjct: 16 DVATQNLNKELQDKGFLLTSTEDIINWARTGSLHWMTFGLACCAVEMMHTSMPRYDLERF 75 Query: 83 GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142 G APRASPRQSD+MIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSV Sbjct: 76 GTAPRASPRQSDLMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSV 135 Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 VRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQ+KIRR G + Sbjct: 136 VRGCDRIVPVDIYVPGCPPTAEALLYGILQLQRKIRRTGTI 176 >gi|260434181|ref|ZP_05788152.1| NADH-quinone oxidoreductase, b subunit [Silicibacter lacuscaerulensis ITI-1157] gi|260418009|gb|EEX11268.1| NADH-quinone oxidoreductase, b subunit [Silicibacter lacuscaerulensis ITI-1157] Length = 174 Score = 283 bits (725), Expect = 6e-75, Method: Compositional matrix adjust. Identities = 130/173 (75%), Positives = 150/173 (86%), Gaps = 1/173 (0%) Query: 11 ISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMM 70 ++G ++ ++K + +++E+ KGFL+TS + ++ WARTGSL WMTFGLACCAVEMM Sbjct: 1 MTGANTAGVDK-EVATQALNAELQDKGFLLTSTEDIINWARTGSLHWMTFGLACCAVEMM 59 Query: 71 QASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCA 130 SMPRYD ERFG APRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCA Sbjct: 60 HTSMPRYDAERFGIAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCA 119 Query: 131 NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG+L LQ+KIRR G + Sbjct: 120 NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGLLQLQRKIRRTGTI 172 >gi|89053661|ref|YP_509112.1| NADH dehydrogenase subunit B [Jannaschia sp. CCS1] gi|122499244|sp|Q28T75|NUOB_JANSC RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|88863210|gb|ABD54087.1| NADH dehydrogenase subunit B [Jannaschia sp. CCS1] Length = 177 Score = 283 bits (724), Expect = 8e-75, Method: Compositional matrix adjust. Identities = 130/155 (83%), Positives = 140/155 (90%) Query: 29 ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88 ++ E+ KGFLVTS + ++ WARTGSL WMTFGLACCAVEMM SMPRYD ERFG APRA Sbjct: 21 LNRELQDKGFLVTSSEDIINWARTGSLHWMTFGLACCAVEMMHTSMPRYDAERFGIAPRA 80 Query: 89 SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 148 SPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR Sbjct: 81 SPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 140 Query: 149 IVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 IVPVDIYVPGCPPTAEAL+YGIL LQ+KIRR G + Sbjct: 141 IVPVDIYVPGCPPTAEALLYGILQLQRKIRRTGTI 175 >gi|114771817|ref|ZP_01449210.1| NADH dehydrogenase subunit B [alpha proteobacterium HTCC2255] gi|114547633|gb|EAU50524.1| NADH dehydrogenase subunit B [alpha proteobacterium HTCC2255] Length = 177 Score = 283 bits (723), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 128/157 (81%), Positives = 143/157 (91%) Query: 27 SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP 86 S ++ E+ KGFL+TS + ++ WARTGSL WMTFGLACCAVEMM ++MPRYDLERFG AP Sbjct: 19 SALNRELQDKGFLLTSAEDIINWARTGSLHWMTFGLACCAVEMMHSAMPRYDLERFGTAP 78 Query: 87 RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGC 146 RASPRQSD+MIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGC Sbjct: 79 RASPRQSDLMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGC 138 Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 DRIVPVDIYVPGCPPTAEAL+YGIL LQ+K+RR G + Sbjct: 139 DRIVPVDIYVPGCPPTAEALLYGILQLQRKMRRTGTI 175 >gi|254511808|ref|ZP_05123875.1| NADH dehydrogenase i, b subunit [Rhodobacteraceae bacterium KLH11] gi|221535519|gb|EEE38507.1| NADH dehydrogenase i, b subunit [Rhodobacteraceae bacterium KLH11] Length = 174 Score = 282 bits (722), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 129/173 (74%), Positives = 150/173 (86%), Gaps = 1/173 (0%) Query: 11 ISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMM 70 ++G ++ ++K + +++E+ KGFL+TS + ++ WARTGSL WMTFGLACCAVEMM Sbjct: 1 MTGANTAGVDK-EVATQALNAELQDKGFLLTSTEDIINWARTGSLHWMTFGLACCAVEMM 59 Query: 71 QASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCA 130 SMPRYD ERFG APRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCA Sbjct: 60 HTSMPRYDAERFGIAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCA 119 Query: 131 NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG++ LQ+KIRR G + Sbjct: 120 NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGLMQLQRKIRRTGTI 172 >gi|259418740|ref|ZP_05742657.1| NADH-quinone oxidoreductase subunit b [Silicibacter sp. TrichCH4B] gi|259344962|gb|EEW56816.1| NADH-quinone oxidoreductase subunit b [Silicibacter sp. TrichCH4B] Length = 177 Score = 282 bits (721), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 129/174 (74%), Positives = 151/174 (86%), Gaps = 1/174 (0%) Query: 10 IISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEM 69 +++G ++ ++K + +++E+ KGFL+TS + ++ WARTGSL WMTFGLACCAVEM Sbjct: 3 VMAGANTAGVDK-EVVTQALNAELQDKGFLLTSAEDIINWARTGSLHWMTFGLACCAVEM 61 Query: 70 MQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSC 129 M SMPRYD ERFG APRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSC Sbjct: 62 MHTSMPRYDAERFGIAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSC 121 Query: 130 ANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 ANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG++ LQ+KIRR G + Sbjct: 122 ANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGLMQLQRKIRRTGTL 175 >gi|84516742|ref|ZP_01004100.1| NADH dehydrogenase beta subunit [Loktanella vestfoldensis SKA53] gi|84509210|gb|EAQ05669.1| NADH dehydrogenase beta subunit [Loktanella vestfoldensis SKA53] Length = 173 Score = 282 bits (721), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 129/155 (83%), Positives = 141/155 (90%) Query: 29 ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88 +++E+ KGFLVTS ++ WARTGSL WMTFGLACCAVEMM SMPRYDLERFG APRA Sbjct: 17 LNAELQDKGFLVTSTADVINWARTGSLHWMTFGLACCAVEMMHTSMPRYDLERFGTAPRA 76 Query: 89 SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 148 SPRQSD+MIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR Sbjct: 77 SPRQSDLMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 136 Query: 149 IVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 IVPVDIYVPGCPPTAEAL+YGIL LQ+K+RR G + Sbjct: 137 IVPVDIYVPGCPPTAEALLYGILQLQRKMRRTGTI 171 >gi|254456317|ref|ZP_05069746.1| NADH dehydrogenase i chain b [Candidatus Pelagibacter sp. HTCC7211] gi|207083319|gb|EDZ60745.1| NADH dehydrogenase i chain b [Candidatus Pelagibacter sp. HTCC7211] Length = 171 Score = 282 bits (721), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 126/164 (76%), Positives = 146/164 (89%) Query: 19 LEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78 +++V +F +++ + + GF+ TS+D L+ W+R+GSL WMTFGLACCAVEMMQ +MPRYD Sbjct: 5 IDQVPEEFKQLAEDFSKNGFITTSLDNLINWSRSGSLHWMTFGLACCAVEMMQTAMPRYD 64 Query: 79 LERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY 138 LERFG APR SPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHY Sbjct: 65 LERFGAAPRGSPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHY 124 Query: 139 SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182 SYSVVRGCDRIVPVD+YVPGCPP+AEAL+YGIL LQKKIR G+ Sbjct: 125 SYSVVRGCDRIVPVDVYVPGCPPSAEALLYGILQLQKKIRNKGS 168 >gi|83942674|ref|ZP_00955135.1| NADH dehydrogenase beta subunit [Sulfitobacter sp. EE-36] gi|83953913|ref|ZP_00962634.1| NADH dehydrogenase beta subunit [Sulfitobacter sp. NAS-14.1] gi|83841858|gb|EAP81027.1| NADH dehydrogenase beta subunit [Sulfitobacter sp. NAS-14.1] gi|83846767|gb|EAP84643.1| NADH dehydrogenase beta subunit [Sulfitobacter sp. EE-36] Length = 178 Score = 281 bits (720), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 127/161 (78%), Positives = 142/161 (88%) Query: 23 DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82 D ++ E+ KGFL+TS + ++ WARTGSL WMTFGLACCAVEMM SMPRYDLERF Sbjct: 16 DVATQNLNKELQDKGFLLTSTEDIINWARTGSLHWMTFGLACCAVEMMHTSMPRYDLERF 75 Query: 83 GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142 G APRASPRQSD+MIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSV Sbjct: 76 GTAPRASPRQSDLMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSV 135 Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 VRGCDR+VPVD+YVPGCPPTAEAL+YGI+ LQ+KIRR G + Sbjct: 136 VRGCDRVVPVDVYVPGCPPTAEALLYGIMQLQRKIRRTGTI 176 >gi|159043857|ref|YP_001532651.1| NADH dehydrogenase subunit B [Dinoroseobacter shibae DFL 12] gi|218527990|sp|A8LIT6|NUOB_DINSH RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|157911617|gb|ABV93050.1| NADH-quinone oxidoreductase [Dinoroseobacter shibae DFL 12] Length = 177 Score = 281 bits (720), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 127/155 (81%), Positives = 141/155 (90%) Query: 29 ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88 +++E+ KGFL+TS + ++ WARTGSL WMTFGLACCAVEMM SMPRYD ERFG APRA Sbjct: 21 LNNELQDKGFLLTSTEDIINWARTGSLHWMTFGLACCAVEMMHTSMPRYDAERFGIAPRA 80 Query: 89 SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 148 SPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR Sbjct: 81 SPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 140 Query: 149 IVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 +VPVDIYVPGCPPTAEAL+YG+L LQ+KIRR G + Sbjct: 141 VVPVDIYVPGCPPTAEALLYGLLQLQRKIRRTGTI 175 >gi|114799608|ref|YP_760447.1| NADH dehydrogenase subunit B [Hyphomonas neptunium ATCC 15444] gi|122942427|sp|Q0C1E6|NUOB_HYPNA RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|114739782|gb|ABI77907.1| NADH-quinone oxidoreductase, B subunit [Hyphomonas neptunium ATCC 15444] Length = 190 Score = 281 bits (720), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 128/162 (79%), Positives = 142/162 (87%) Query: 23 DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82 D +S +S ++ KG+ + D L++WARTGSLMWMTFGLACCAVEMM A PRYDLERF Sbjct: 28 DPFYSGLSDQLADKGYFTAAADDLISWARTGSLMWMTFGLACCAVEMMHAGNPRYDLERF 87 Query: 83 GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142 G APR SPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSV Sbjct: 88 GMAPRGSPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSV 147 Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 VRGCDRIVPVDIY+PGCPPTAEAL+YG L LQKKIRR G+++ Sbjct: 148 VRGCDRIVPVDIYIPGCPPTAEALVYGFLQLQKKIRREGSIE 189 >gi|119384981|ref|YP_916037.1| NADH dehydrogenase subunit B [Paracoccus denitrificans PD1222] gi|218527939|sp|A1B497|NUOB_PARDP RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NADH dehydrogenase I, subunit 6; AltName: Full=NADH-quinone oxidoreductase subunit 6; Short=NQO6; AltName: Full=NDH-1 subunit B; AltName: Full=NDH-1, subunit 6 gi|119374748|gb|ABL70341.1| NADH dehydrogenase subunit B [Paracoccus denitrificans PD1222] Length = 175 Score = 281 bits (720), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 129/174 (74%), Positives = 151/174 (86%), Gaps = 1/174 (0%) Query: 10 IISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEM 69 +++G ++ ++ D + ++ E+ KGFL+T+ + ++ WAR GSL WMTFGLACCAVEM Sbjct: 1 MMTGLNTAGADR-DLATAELNRELQDKGFLLTTTEDIINWARNGSLHWMTFGLACCAVEM 59 Query: 70 MQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSC 129 MQ SMPRYDLERFG APRASPRQSD+MIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSC Sbjct: 60 MQTSMPRYDLERFGTAPRASPRQSDLMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSC 119 Query: 130 ANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 ANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQ++IRR G + Sbjct: 120 ANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQRRIRRTGTL 173 >gi|126729549|ref|ZP_01745362.1| NADH dehydrogenase subunit B [Sagittula stellata E-37] gi|126709668|gb|EBA08721.1| NADH dehydrogenase subunit B [Sagittula stellata E-37] Length = 174 Score = 281 bits (719), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 127/155 (81%), Positives = 141/155 (90%) Query: 29 ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88 ++ E+ KGFL+TS + ++ WARTGSL WMTFGLACCAVEMM SMPRYDLERFG APRA Sbjct: 18 LNRELQDKGFLLTSTEDIINWARTGSLHWMTFGLACCAVEMMHTSMPRYDLERFGTAPRA 77 Query: 89 SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 148 SPRQSD+MIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR Sbjct: 78 SPRQSDLMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 137 Query: 149 IVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 +VPVD+YVPGCPPTAEAL+YGI+ LQKKIRR G + Sbjct: 138 VVPVDVYVPGCPPTAEALLYGIMALQKKIRRTGTL 172 >gi|260574759|ref|ZP_05842762.1| NADH-quinone oxidoreductase, B subunit [Rhodobacter sp. SW2] gi|259023176|gb|EEW26469.1| NADH-quinone oxidoreductase, B subunit [Rhodobacter sp. SW2] Length = 177 Score = 281 bits (719), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 127/155 (81%), Positives = 143/155 (92%) Query: 29 ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88 ++ E++ KGFL+TS + ++ WARTGSL WMTFGLACCAVEM+Q SMPRYDLERFG APRA Sbjct: 21 LNRELSDKGFLLTSTEDIINWARTGSLHWMTFGLACCAVEMIQLSMPRYDLERFGTAPRA 80 Query: 89 SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 148 SPRQSD+MIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR Sbjct: 81 SPRQSDLMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 140 Query: 149 IVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 IVPVD+YVPGCPPTAEAL+YGIL LQ+K+RR G + Sbjct: 141 IVPVDVYVPGCPPTAEALLYGILQLQRKMRRTGTI 175 >gi|409251|gb|AAA03036.1| NADH dehydrogenase [Paracoccus denitrificans] Length = 174 Score = 281 bits (719), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 128/161 (79%), Positives = 143/161 (88%) Query: 23 DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82 D + ++ E+ KGFL+T+ + ++ WAR GSL WMTFGLACCAVEMMQ SMPRYDLERF Sbjct: 12 DLATAELNRELQDKGFLLTTTEDIINWARNGSLHWMTFGLACCAVEMMQTSMPRYDLERF 71 Query: 83 GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142 G APRASPRQSD+MIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSV Sbjct: 72 GTAPRASPRQSDLMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSV 131 Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 VRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQ++IRR G + Sbjct: 132 VRGCDRIVPVDIYVPGCPPTAEALLYGILQLQRRIRRTGTL 172 >gi|99080583|ref|YP_612737.1| NADH dehydrogenase subunit B [Ruegeria sp. TM1040] gi|123077741|sp|Q1GIP1|NUOB_SILST RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|99036863|gb|ABF63475.1| NADH-quinone oxidoreductase B subunit [Ruegeria sp. TM1040] Length = 174 Score = 281 bits (719), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 127/155 (81%), Positives = 141/155 (90%) Query: 29 ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88 +++E+ KGFL+TS + ++ WARTGSL WMTFGLACCAVEMM SMPRYD ERFG APRA Sbjct: 18 LNAELQDKGFLLTSAEDIINWARTGSLHWMTFGLACCAVEMMHTSMPRYDAERFGIAPRA 77 Query: 89 SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 148 SPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR Sbjct: 78 SPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 137 Query: 149 IVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 IVPVDIYVPGCPPTAEAL+YG++ LQ+KIRR G + Sbjct: 138 IVPVDIYVPGCPPTAEALLYGLMQLQRKIRRTGTL 172 >gi|86137600|ref|ZP_01056177.1| NADH dehydrogenase beta subunit [Roseobacter sp. MED193] gi|85825935|gb|EAQ46133.1| NADH dehydrogenase beta subunit [Roseobacter sp. MED193] Length = 174 Score = 281 bits (719), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 129/173 (74%), Positives = 150/173 (86%), Gaps = 1/173 (0%) Query: 11 ISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMM 70 ++G ++ ++K + +++E+ KGFL+TS + ++ WARTGSL WMTFGLACCAVEMM Sbjct: 1 MTGANTAGVDK-EVVTQALNAELQDKGFLLTSTEDIINWARTGSLHWMTFGLACCAVEMM 59 Query: 71 QASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCA 130 SMPRYD ERFG APRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCA Sbjct: 60 HTSMPRYDAERFGIAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCA 119 Query: 131 NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG++ LQ+KIRR G + Sbjct: 120 NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGLMQLQRKIRRTGTL 172 >gi|71083583|ref|YP_266302.1| NADH dehydrogenase subunit B [Candidatus Pelagibacter ubique HTCC1062] gi|91761996|ref|ZP_01263961.1| NADH dehydrogenase beta subunit [Candidatus Pelagibacter ubique HTCC1002] gi|123646646|sp|Q4FM90|NUOB_PELUB RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|71062696|gb|AAZ21699.1| NADH Dehydrogenase I Chain B [Candidatus Pelagibacter ubique HTCC1062] gi|91717798|gb|EAS84448.1| NADH dehydrogenase beta subunit [Candidatus Pelagibacter ubique HTCC1002] Length = 173 Score = 281 bits (719), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 125/165 (75%), Positives = 145/165 (87%) Query: 20 EKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDL 79 +++ +F +++ + + GF+ TS+D L+ W+R GSL WMTFGLACCAVEMMQ +MPRYDL Sbjct: 8 KEIPEEFKKLAEDFSKNGFITTSLDNLINWSRAGSLHWMTFGLACCAVEMMQTAMPRYDL 67 Query: 80 ERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS 139 ERFG APR SPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYS Sbjct: 68 ERFGAAPRGSPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYS 127 Query: 140 YSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 YSVVRGCD+IVPVDIYVPGCPP+AEAL+YGIL LQKKIR G+ + Sbjct: 128 YSVVRGCDKIVPVDIYVPGCPPSAEALLYGILQLQKKIRNKGSFE 172 >gi|126740377|ref|ZP_01756065.1| NADH dehydrogenase subunit B [Roseobacter sp. SK209-2-6] gi|126718513|gb|EBA15227.1| NADH dehydrogenase subunit B [Roseobacter sp. SK209-2-6] Length = 174 Score = 281 bits (718), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 128/173 (73%), Positives = 150/173 (86%), Gaps = 1/173 (0%) Query: 11 ISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMM 70 ++G ++ ++K + I++E+ KGFL+TS + ++ WARTGSL WMTFGLACCAVEMM Sbjct: 1 MTGANTAGVDK-EVVTQAINAELQDKGFLLTSAEDIINWARTGSLHWMTFGLACCAVEMM 59 Query: 71 QASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCA 130 SMPRYD ERFG APRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCA Sbjct: 60 HTSMPRYDAERFGIAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCA 119 Query: 131 NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 NGGGYYHYSYSVVRGCDR+VPVD+YVPGCPPTAEAL+YG++ LQ+KIRR G + Sbjct: 120 NGGGYYHYSYSVVRGCDRVVPVDVYVPGCPPTAEALLYGLMQLQRKIRRTGTL 172 >gi|310816715|ref|YP_003964679.1| NADH-quinone oxidoreductase, B subunit [Ketogulonicigenium vulgare Y25] gi|308755450|gb|ADO43379.1| NADH-quinone oxidoreductase, B subunit [Ketogulonicigenium vulgare Y25] Length = 188 Score = 281 bits (718), Expect = 4e-74, Method: Compositional matrix adjust. Identities = 134/184 (72%), Positives = 149/184 (80%), Gaps = 6/184 (3%) Query: 6 VNQKIISGQSSCSLEK----VDADFSRI--SSEITHKGFLVTSVDQLVTWARTGSLMWMT 59 +NQ Q S + DAD + + + KGFLVTS ++ WARTGSL WMT Sbjct: 3 LNQLSTGAQGSVQTGRNSAGADADHAALVLGRAVQDKGFLVTSTADIINWARTGSLHWMT 62 Query: 60 FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119 FGLACCAVEMMQ SMPRYDLERFG APRASPRQ+D+MIVAGTLTNKMA ALR+VYDQMPE Sbjct: 63 FGLACCAVEMMQLSMPRYDLERFGTAPRASPRQADLMIVAGTLTNKMAPALRKVYDQMPE 122 Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD+YVPGCPPTAEAL+YGI+ LQ+KIRR Sbjct: 123 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALLYGIMQLQRKIRR 182 Query: 180 VGNV 183 G + Sbjct: 183 TGTI 186 >gi|254476799|ref|ZP_05090185.1| NADH-quinone oxidoreductase chain b [Ruegeria sp. R11] gi|214031042|gb|EEB71877.1| NADH-quinone oxidoreductase chain b [Ruegeria sp. R11] Length = 177 Score = 281 bits (718), Expect = 4e-74, Method: Compositional matrix adjust. Identities = 127/174 (72%), Positives = 151/174 (86%), Gaps = 1/174 (0%) Query: 10 IISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEM 69 +++G ++ ++K + +++E+ KGFL+TS + ++ WARTGSL WMTFGLACCAVEM Sbjct: 3 VMTGANTAGVDK-EMVTQALNAELQDKGFLLTSAEDIINWARTGSLHWMTFGLACCAVEM 61 Query: 70 MQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSC 129 M SMPRYD ERFG APRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSC Sbjct: 62 MHTSMPRYDAERFGIAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSC 121 Query: 130 ANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 ANGGGYYHYSYSVVRGCDR+VPVD+YVPGCPPTAEAL+YG++ LQ+KIRR G + Sbjct: 122 ANGGGYYHYSYSVVRGCDRVVPVDVYVPGCPPTAEALLYGLMQLQRKIRRTGTL 175 >gi|84502605|ref|ZP_01000724.1| NADH dehydrogenase beta subunit [Oceanicola batsensis HTCC2597] gi|84389000|gb|EAQ01798.1| NADH dehydrogenase beta subunit [Oceanicola batsensis HTCC2597] Length = 207 Score = 281 bits (718), Expect = 4e-74, Method: Compositional matrix adjust. Identities = 127/155 (81%), Positives = 139/155 (89%) Query: 29 ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88 ++ E+ KGFL+TS + L+ WARTGSL WMTFGLACCAVEMM SMPRYD ERFG APRA Sbjct: 51 LNKELQDKGFLLTSTEDLINWARTGSLHWMTFGLACCAVEMMHTSMPRYDAERFGIAPRA 110 Query: 89 SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 148 SPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYV+SMGSCANGGGYYHYSYSVVRGCDR Sbjct: 111 SPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGYYHYSYSVVRGCDR 170 Query: 149 IVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 IVPVDIYVPGCPPTAEAL+YGI+ L +KIRR G + Sbjct: 171 IVPVDIYVPGCPPTAEALLYGIMQLARKIRRTGTI 205 >gi|163732066|ref|ZP_02139512.1| NADH dehydrogenase subunit B [Roseobacter litoralis Och 149] gi|161394364|gb|EDQ18687.1| NADH dehydrogenase subunit B [Roseobacter litoralis Och 149] Length = 177 Score = 280 bits (717), Expect = 5e-74, Method: Compositional matrix adjust. Identities = 126/155 (81%), Positives = 141/155 (90%) Query: 29 ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88 ++ E+ KGFL+TS + ++ WARTGSL WMTFGLACCAVEMM +MPRYD+ERFG APRA Sbjct: 21 LNRELQDKGFLLTSTEDIINWARTGSLHWMTFGLACCAVEMMHTAMPRYDMERFGTAPRA 80 Query: 89 SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 148 SPRQSD+MIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR Sbjct: 81 SPRQSDLMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 140 Query: 149 IVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 IVPVDIYVPGCPPTAEAL+YGI+ LQ+KIRR G + Sbjct: 141 IVPVDIYVPGCPPTAEALLYGIMQLQRKIRRTGTI 175 >gi|149184638|ref|ZP_01862956.1| NADH dehydrogenase subunit B [Erythrobacter sp. SD-21] gi|148831958|gb|EDL50391.1| NADH dehydrogenase subunit B [Erythrobacter sp. SD-21] Length = 168 Score = 280 bits (717), Expect = 6e-74, Method: Compositional matrix adjust. Identities = 130/167 (77%), Positives = 147/167 (88%), Gaps = 1/167 (0%) Query: 19 LEKVDAD-FSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRY 77 + K DAD F+ + +E+ KGFLVTS + L WARTGSL WMTFGLACCAVEM+ +MPRY Sbjct: 1 MRKPDADYFNALQTEVNDKGFLVTSTEDLFQWARTGSLWWMTFGLACCAVEMIHVNMPRY 60 Query: 78 DLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137 D+ERFG APRASPRQSDVMIVAGTL NKMA ALR+VYDQM EP+YVISMGSCANGGGYYH Sbjct: 61 DMERFGVAPRASPRQSDVMIVAGTLCNKMAPALRKVYDQMSEPKYVISMGSCANGGGYYH 120 Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 YSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG++ LQ+KIRRVG ++ Sbjct: 121 YSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGVMQLQRKIRRVGTIE 167 >gi|255262340|ref|ZP_05341682.1| NADH-quinone oxidoreductase subunit b [Thalassiobium sp. R2A62] gi|255104675|gb|EET47349.1| NADH-quinone oxidoreductase subunit b [Thalassiobium sp. R2A62] Length = 177 Score = 280 bits (716), Expect = 6e-74, Method: Compositional matrix adjust. Identities = 127/155 (81%), Positives = 141/155 (90%) Query: 29 ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88 ++ E+ KGFL+TS + ++ WARTGSL WMTFGLACCAVEMM SMPRYDLERFG APRA Sbjct: 21 LNRELQDKGFLLTSTEDIINWARTGSLHWMTFGLACCAVEMMHTSMPRYDLERFGTAPRA 80 Query: 89 SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 148 SPRQSD+MIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR Sbjct: 81 SPRQSDLMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 140 Query: 149 IVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 IVPVD+YVPGCPPTAEAL+YGIL LQ+K+RR G + Sbjct: 141 IVPVDVYVPGCPPTAEALLYGILQLQRKMRRTGTL 175 >gi|163738798|ref|ZP_02146212.1| NADH dehydrogenase subunit B [Phaeobacter gallaeciensis BS107] gi|163741491|ref|ZP_02148882.1| NADH dehydrogenase subunit B [Phaeobacter gallaeciensis 2.10] gi|161385225|gb|EDQ09603.1| NADH dehydrogenase subunit B [Phaeobacter gallaeciensis 2.10] gi|161388126|gb|EDQ12481.1| NADH dehydrogenase subunit B [Phaeobacter gallaeciensis BS107] Length = 174 Score = 280 bits (716), Expect = 6e-74, Method: Compositional matrix adjust. Identities = 127/173 (73%), Positives = 150/173 (86%), Gaps = 1/173 (0%) Query: 11 ISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMM 70 ++G ++ ++K + +++E+ KGFL+TS + ++ WARTGSL WMTFGLACCAVEMM Sbjct: 1 MTGANTAGVDK-EVVTQALNAELQDKGFLLTSAEDIINWARTGSLHWMTFGLACCAVEMM 59 Query: 71 QASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCA 130 SMPRYD ERFG APRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCA Sbjct: 60 HTSMPRYDAERFGIAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCA 119 Query: 131 NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 NGGGYYHYSYSVVRGCDR+VPVD+YVPGCPPTAEAL+YG++ LQ+KIRR G + Sbjct: 120 NGGGYYHYSYSVVRGCDRVVPVDVYVPGCPPTAEALLYGLMQLQRKIRRTGTL 172 >gi|110680471|ref|YP_683478.1| NADH dehydrogenase subunit B [Roseobacter denitrificans OCh 114] gi|123172224|sp|Q163Q1|NUOB_ROSDO RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|109456587|gb|ABG32792.1| NADH-quinone oxidoreductase chain B [Roseobacter denitrificans OCh 114] Length = 177 Score = 280 bits (716), Expect = 7e-74, Method: Compositional matrix adjust. Identities = 125/155 (80%), Positives = 141/155 (90%) Query: 29 ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88 ++ E+ KGFL+TS + ++ WARTGSL WMTFGLACCAVEMM +MPRYD+ERFG APRA Sbjct: 21 LNRELQDKGFLLTSTEDIINWARTGSLHWMTFGLACCAVEMMHTAMPRYDMERFGTAPRA 80 Query: 89 SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 148 SPRQSD+MIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR Sbjct: 81 SPRQSDLMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 140 Query: 149 IVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 IVPVD+YVPGCPPTAEAL+YGI+ LQ+KIRR G + Sbjct: 141 IVPVDVYVPGCPPTAEALLYGIMQLQRKIRRTGTI 175 >gi|254465701|ref|ZP_05079112.1| NADH-quinone oxidoreductase chain b [Rhodobacterales bacterium Y4I] gi|206686609|gb|EDZ47091.1| NADH-quinone oxidoreductase chain b [Rhodobacterales bacterium Y4I] Length = 174 Score = 280 bits (715), Expect = 7e-74, Method: Compositional matrix adjust. Identities = 125/155 (80%), Positives = 141/155 (90%) Query: 29 ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88 +++E+ KGFL+TS + ++ WARTGSL WMTFGLACCAVEMM SMPRYD ERFG APRA Sbjct: 18 LNAELQDKGFLLTSAEDIINWARTGSLHWMTFGLACCAVEMMHTSMPRYDAERFGIAPRA 77 Query: 89 SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 148 SPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR Sbjct: 78 SPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 137 Query: 149 IVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 +VPVD+YVPGCPPTAEAL+YG++ LQ+KIRR G + Sbjct: 138 VVPVDVYVPGCPPTAEALLYGLMQLQRKIRRTGTL 172 >gi|148555890|ref|YP_001263472.1| NADH dehydrogenase subunit B [Sphingomonas wittichii RW1] gi|218528008|sp|A5VAL8|NUOB_SPHWW RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|148501080|gb|ABQ69334.1| NADH-quinone oxidoreductase, B subunit [Sphingomonas wittichii RW1] Length = 187 Score = 278 bits (711), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 130/163 (79%), Positives = 144/163 (88%), Gaps = 1/163 (0%) Query: 23 DAD-FSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLER 81 D D F + +E+ KGFLVTS ++L WARTGSL WMTFGLACCAVEM+ +MPRYDLER Sbjct: 24 DPDYFKALQAEVNDKGFLVTSAEELFQWARTGSLWWMTFGLACCAVEMIHVNMPRYDLER 83 Query: 82 FGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYS 141 FG APRASPRQSDVMIVAGTL NKMA ALRRVYDQM EP+YVISMGSCANGGGYYHYSYS Sbjct: 84 FGAAPRASPRQSDVMIVAGTLCNKMAPALRRVYDQMSEPKYVISMGSCANGGGYYHYSYS 143 Query: 142 VVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 VVRGCDRIVPVDIYVPGCPPTAEAL+YGI+ LQ+KIRR+G ++ Sbjct: 144 VVRGCDRIVPVDIYVPGCPPTAEALLYGIMQLQRKIRRIGTLE 186 >gi|254420093|ref|ZP_05033817.1| NADH-quinone oxidoreductase, B subunit subfamily [Brevundimonas sp. BAL3] gi|196186270|gb|EDX81246.1| NADH-quinone oxidoreductase, B subunit subfamily [Brevundimonas sp. BAL3] Length = 173 Score = 277 bits (709), Expect = 4e-73, Method: Compositional matrix adjust. Identities = 123/161 (76%), Positives = 143/161 (88%) Query: 23 DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82 D F ++ E+ +GFL S+D ++TWARTGSLMWMTFGLACCAVEM+Q SMPR+D+ERF Sbjct: 11 DKFFESVNMELGERGFLTASLDDVITWARTGSLMWMTFGLACCAVEMIQMSMPRFDVERF 70 Query: 83 GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142 G APR SPR SD+MIVAGTLTNKMA A+R+VYDQMP+PRYV+SMGSCANGGGYYHYSYSV Sbjct: 71 GMAPRGSPRHSDLMIVAGTLTNKMAPAIRKVYDQMPDPRYVVSMGSCANGGGYYHYSYSV 130 Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 VRGCDR+VPVD+YVPGCPPTAEAL+YG+L LQKKIRR G + Sbjct: 131 VRGCDRVVPVDVYVPGCPPTAEALLYGLLQLQKKIRRTGTI 171 >gi|307293269|ref|ZP_07573115.1| NADH-quinone oxidoreductase, B subunit [Sphingobium chlorophenolicum L-1] gi|306881335|gb|EFN12551.1| NADH-quinone oxidoreductase, B subunit [Sphingobium chlorophenolicum L-1] Length = 184 Score = 277 bits (708), Expect = 5e-73, Method: Compositional matrix adjust. Identities = 128/163 (78%), Positives = 146/163 (89%), Gaps = 1/163 (0%) Query: 23 DADF-SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLER 81 D DF + ++SE++ KGFLVTS ++L WARTGSL WMTFGLACCAVEM+ +MPRYD+ER Sbjct: 21 DQDFFNALNSEVSDKGFLVTSTEELFQWARTGSLWWMTFGLACCAVEMIHVNMPRYDMER 80 Query: 82 FGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYS 141 FG APRASPRQSDVMIVAGTL NKMA ALR+VYDQM P+YVISMGSCANGGGYYHYSYS Sbjct: 81 FGAAPRASPRQSDVMIVAGTLCNKMAPALRKVYDQMSNPKYVISMGSCANGGGYYHYSYS 140 Query: 142 VVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 VVRGCDRIVPVDIYVPGCPPTAEAL+YG++ LQ+KIRR+G V+ Sbjct: 141 VVRGCDRIVPVDIYVPGCPPTAEALLYGVMQLQRKIRRIGTVE 183 >gi|126727142|ref|ZP_01742979.1| NADH dehydrogenase subunit B [Rhodobacterales bacterium HTCC2150] gi|126703570|gb|EBA02666.1| NADH dehydrogenase subunit B [Rhodobacterales bacterium HTCC2150] Length = 176 Score = 277 bits (708), Expect = 6e-73, Method: Compositional matrix adjust. Identities = 123/155 (79%), Positives = 141/155 (90%) Query: 29 ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88 ++ E+ KGFL+TS + ++ WARTGSL WMTFGLACCAVEMM +MPRYD+ERFG APRA Sbjct: 20 LNRELQDKGFLLTSTEDIINWARTGSLHWMTFGLACCAVEMMHTAMPRYDMERFGTAPRA 79 Query: 89 SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 148 SPRQSD+MIVAGTLTNKMA ALR+VYDQMPEPRYV+SMGSCANGGGYYHYSYSVVRGCDR Sbjct: 80 SPRQSDLMIVAGTLTNKMAPALRKVYDQMPEPRYVLSMGSCANGGGYYHYSYSVVRGCDR 139 Query: 149 IVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 +VPVD+YVPGCPPTAEAL+YG+L LQ+KIRR G + Sbjct: 140 VVPVDMYVPGCPPTAEALLYGLLQLQRKIRRTGTI 174 >gi|294011308|ref|YP_003544768.1| NADH dehydrogenase I chain B [Sphingobium japonicum UT26S] gi|292674638|dbj|BAI96156.1| NADH dehydrogenase I chain B [Sphingobium japonicum UT26S] Length = 184 Score = 276 bits (707), Expect = 8e-73, Method: Compositional matrix adjust. Identities = 126/159 (79%), Positives = 143/159 (89%) Query: 26 FSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA 85 F ++SE++ KGFLVTS ++L WARTGSL WMTFGLACCAVEM+ +MPRYD+ERFG A Sbjct: 25 FDALNSEVSDKGFLVTSTEELFQWARTGSLWWMTFGLACCAVEMIHVNMPRYDMERFGAA 84 Query: 86 PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRG 145 PRASPRQSDVMIVAGTL NKMA ALR+VYDQM P+YVISMGSCANGGGYYHYSYSVVRG Sbjct: 85 PRASPRQSDVMIVAGTLCNKMAPALRKVYDQMSNPKYVISMGSCANGGGYYHYSYSVVRG 144 Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 CDRIVPVDIYVPGCPPTAEAL+YG++ LQ+KIRR+G V+ Sbjct: 145 CDRIVPVDIYVPGCPPTAEALLYGVMQLQRKIRRIGTVE 183 >gi|296283830|ref|ZP_06861828.1| NADH dehydrogenase subunit B [Citromicrobium bathyomarinum JL354] Length = 192 Score = 276 bits (706), Expect = 9e-73, Method: Compositional matrix adjust. Identities = 128/179 (71%), Positives = 149/179 (83%), Gaps = 1/179 (0%) Query: 7 NQKIISGQSSCSLEKVDAD-FSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACC 65 N ++ + + D+D F+ + +E+ KGFLVTS ++L WARTGSL WMTFGLACC Sbjct: 13 NPQMQPAAQPGEVRQPDSDYFNALQTEVNDKGFLVTSTEELFQWARTGSLWWMTFGLACC 72 Query: 66 AVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVIS 125 AVEM+ +MPRYD+ERFG APRASPRQSDVMIVAGTL NKMA ALR+VYDQM P+YVIS Sbjct: 73 AVEMIHVNMPRYDMERFGVAPRASPRQSDVMIVAGTLCNKMAPALRKVYDQMSNPKYVIS 132 Query: 126 MGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 MGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG++ LQ+KIRR G V+ Sbjct: 133 MGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGVMQLQRKIRRSGTVE 191 >gi|294677055|ref|YP_003577670.1| NADH-quinone oxidoreductase subunit B [Rhodobacter capsulatus SB 1003] gi|6647658|sp|O84970|NUOB_RHOCA RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|3282560|gb|AAC24986.1| NUOB [Rhodobacter capsulatus] gi|294475875|gb|ADE85263.1| NADH-quinone oxidoreductase, B subunit [Rhodobacter capsulatus SB 1003] Length = 177 Score = 276 bits (705), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 124/155 (80%), Positives = 141/155 (90%) Query: 29 ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88 ++ ++ KGFL+T+ + ++ WAR GSL WMTFGLACCAVEMM +MPRYD+ER+GFAPRA Sbjct: 21 LNRDLQDKGFLLTTAEDIINWARNGSLHWMTFGLACCAVEMMHTAMPRYDVERYGFAPRA 80 Query: 89 SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 148 SPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR Sbjct: 81 SPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 140 Query: 149 IVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 IVPVDIYVPGCPP+AEAL+YGIL LQ+KIRR G + Sbjct: 141 IVPVDIYVPGCPPSAEALMYGILQLQRKIRRTGTL 175 >gi|87200316|ref|YP_497573.1| NADH dehydrogenase subunit B [Novosphingobium aromaticivorans DSM 12444] gi|123488910|sp|Q2G5Y4|NUOB_NOVAD RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|87135997|gb|ABD26739.1| NADH dehydrogenase subunit B [Novosphingobium aromaticivorans DSM 12444] Length = 181 Score = 276 bits (705), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 125/161 (77%), Positives = 143/161 (88%) Query: 24 ADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFG 83 A F +++E+ KGFLVTS ++L WARTGSL WMTFGLACCAVEM+ +MPRYD+ERFG Sbjct: 20 AFFDSLNAEVNDKGFLVTSTEELFQWARTGSLWWMTFGLACCAVEMIHVNMPRYDMERFG 79 Query: 84 FAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVV 143 APRASPRQSDVMIVAGTL NKMA ALR+VYDQM +P+YVISMGSCANGGGYYHYSYSVV Sbjct: 80 VAPRASPRQSDVMIVAGTLCNKMAPALRKVYDQMSDPKYVISMGSCANGGGYYHYSYSVV 139 Query: 144 RGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 RGCDRIVPVDIYVPGCPPTAEAL+YG++ LQ+KIRR G ++ Sbjct: 140 RGCDRIVPVDIYVPGCPPTAEALLYGVMQLQRKIRRAGTLE 180 >gi|326387461|ref|ZP_08209070.1| NADH dehydrogenase subunit B [Novosphingobium nitrogenifigens DSM 19370] gi|326208117|gb|EGD58925.1| NADH dehydrogenase subunit B [Novosphingobium nitrogenifigens DSM 19370] Length = 183 Score = 276 bits (705), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 125/161 (77%), Positives = 144/161 (89%) Query: 24 ADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFG 83 A F +++E++ KGFLVTS ++L WARTGSL WMTFGLACCAVEM+ +MPRYD+ERFG Sbjct: 22 AFFDSLNAEVSDKGFLVTSTEELFQWARTGSLWWMTFGLACCAVEMIHVNMPRYDMERFG 81 Query: 84 FAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVV 143 APRASPRQSDVMIVAGTL NKMA ALR+VYDQM +P+YVISMGSCANGGGYYHYSYSVV Sbjct: 82 VAPRASPRQSDVMIVAGTLCNKMAPALRKVYDQMSDPKYVISMGSCANGGGYYHYSYSVV 141 Query: 144 RGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 RGCDRIVPVDIYVPGCPPTAEAL+YG++ LQ+KIRR G ++ Sbjct: 142 RGCDRIVPVDIYVPGCPPTAEALLYGVMQLQRKIRRAGTLE 182 >gi|332185849|ref|ZP_08387596.1| NADH-quinone oxidoreductase, B subunit [Sphingomonas sp. S17] gi|332014207|gb|EGI56265.1| NADH-quinone oxidoreductase, B subunit [Sphingomonas sp. S17] Length = 194 Score = 275 bits (704), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 126/159 (79%), Positives = 142/159 (89%) Query: 26 FSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA 85 F ++ E+T KGFLVTS ++L WARTGSL WMTFGLACCAVEM+ +MPRYD+ERFG A Sbjct: 35 FDGLNGELTDKGFLVTSTEELFQWARTGSLWWMTFGLACCAVEMIHVNMPRYDMERFGAA 94 Query: 86 PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRG 145 PRASPRQSDVMIVAGTL NKMA ALRRVYDQM P+YVISMGSCANGGGYYHYSYSVVRG Sbjct: 95 PRASPRQSDVMIVAGTLCNKMAPALRRVYDQMSNPKYVISMGSCANGGGYYHYSYSVVRG 154 Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 CDRIVPVDIYVPGCPPTAEAL+YG++ LQ+KIRR G+++ Sbjct: 155 CDRIVPVDIYVPGCPPTAEALLYGVMQLQRKIRRAGSIE 193 >gi|254294103|ref|YP_003060126.1| NADH-quinone oxidoreductase subunit beta [Hirschia baltica ATCC 49814] gi|254042634|gb|ACT59429.1| NADH-quinone oxidoreductase, B subunit [Hirschia baltica ATCC 49814] Length = 188 Score = 275 bits (703), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 128/183 (69%), Positives = 150/183 (81%) Query: 1 MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTF 60 M TVN + +S + D F+ +S E+ KGF+V +D ++WARTGSLM+M+F Sbjct: 4 MSTPTVNSAQSASDASAKIRGDDPFFAGVSDELADKGFVVAKLDDAISWARTGSLMFMSF 63 Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 GLACCAVEMM A+ PRYD+ERFG APR +PRQSD+MIVAGTLTNKMA A+R+VYDQM EP Sbjct: 64 GLACCAVEMMHAANPRYDMERFGMAPRGTPRQSDLMIVAGTLTNKMAPAMRKVYDQMAEP 123 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD+YVPGCPPTAEAL+YG+L LQKKIRR Sbjct: 124 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALMYGLLQLQKKIRRE 183 Query: 181 GNV 183 G + Sbjct: 184 GTI 186 >gi|85374165|ref|YP_458227.1| NADH dehydrogenase subunit B [Erythrobacter litoralis HTCC2594] gi|84787248|gb|ABC63430.1| NuoB, NADH dehydrogenase I, B subunit [Erythrobacter litoralis HTCC2594] Length = 217 Score = 275 bits (702), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 126/168 (75%), Positives = 145/168 (86%), Gaps = 1/168 (0%) Query: 18 SLEKVDAD-FSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPR 76 + + D D F+ + +E+ KGFLVTS + L WARTGSL WMTFGLACCAVEM+ +MPR Sbjct: 49 EVRQPDGDYFNALQTEVNDKGFLVTSTEDLFQWARTGSLWWMTFGLACCAVEMIHVNMPR 108 Query: 77 YDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY 136 YD+ERFG APRASPRQSDVMIVAGTL NKMA ALR+VYDQM +P+YVISMGSCANGGGYY Sbjct: 109 YDMERFGAAPRASPRQSDVMIVAGTLCNKMAPALRKVYDQMSDPKYVISMGSCANGGGYY 168 Query: 137 HYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 HYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG++ LQ+KIRR G ++ Sbjct: 169 HYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGVMQLQRKIRRSGTIE 216 >gi|85708754|ref|ZP_01039820.1| NADH dehydrogenase-ubiquinone oxidoreductase, chain B [Erythrobacter sp. NAP1] gi|85690288|gb|EAQ30291.1| NADH dehydrogenase-ubiquinone oxidoreductase, chain B [Erythrobacter sp. NAP1] Length = 197 Score = 275 bits (702), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 126/168 (75%), Positives = 145/168 (86%), Gaps = 1/168 (0%) Query: 18 SLEKVDADFSR-ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPR 76 + + D D+ R + +E+ KGFLVTS + L WARTGSL WMTFGLACCAVEM+ +MPR Sbjct: 29 EVRQPDEDYFRSLQTEVNDKGFLVTSTEDLFQWARTGSLWWMTFGLACCAVEMIHVNMPR 88 Query: 77 YDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY 136 YD+ERFG APRASPRQSDVMIVAGTL NKMA ALR+VYDQM +P+YVISMGSCANGGGYY Sbjct: 89 YDMERFGIAPRASPRQSDVMIVAGTLCNKMAPALRKVYDQMSDPKYVISMGSCANGGGYY 148 Query: 137 HYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 HYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG++ LQ+KIRR G ++ Sbjct: 149 HYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGVMQLQRKIRRSGTIE 196 >gi|94496481|ref|ZP_01303058.1| NuoB, NADH dehydrogenase I, B subunit [Sphingomonas sp. SKA58] gi|94424227|gb|EAT09251.1| NuoB, NADH dehydrogenase I, B subunit [Sphingomonas sp. SKA58] Length = 172 Score = 274 bits (701), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 126/163 (77%), Positives = 145/163 (88%), Gaps = 1/163 (0%) Query: 23 DADF-SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLER 81 D DF + ++ E++ KGFLVTS ++L WARTGSL WMTFGLACCAVEM+ +MPRYD+ER Sbjct: 9 DQDFFNALNGEVSDKGFLVTSTEELFQWARTGSLWWMTFGLACCAVEMIHVNMPRYDMER 68 Query: 82 FGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYS 141 FG APRASPRQSDVMIVAGTL NKMA ALR+VYDQM P+YVISMGSCANGGGYYHYSYS Sbjct: 69 FGAAPRASPRQSDVMIVAGTLCNKMAPALRKVYDQMSNPKYVISMGSCANGGGYYHYSYS 128 Query: 142 VVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 VVRGCDRIVPVDIYVPGCPPTAEAL+YG++ LQ+KIRR+G ++ Sbjct: 129 VVRGCDRIVPVDIYVPGCPPTAEALLYGVMQLQRKIRRIGTIE 171 >gi|103486796|ref|YP_616357.1| NADH dehydrogenase subunit B [Sphingopyxis alaskensis RB2256] gi|122985072|sp|Q1GTJ8|NUOB_SPHAL RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|98976873|gb|ABF53024.1| NADH-quinone oxidoreductase, B subunit [Sphingopyxis alaskensis RB2256] Length = 177 Score = 274 bits (700), Expect = 5e-72, Method: Compositional matrix adjust. Identities = 126/159 (79%), Positives = 139/159 (87%) Query: 26 FSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA 85 F +S E+ KGFLVTS + L WARTGSL WMTFGLACCAVEM+ +MPRYD+ERFG A Sbjct: 18 FDDLSGEVGDKGFLVTSTEDLFNWARTGSLWWMTFGLACCAVEMIHVNMPRYDMERFGVA 77 Query: 86 PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRG 145 PRASPRQSDVMIVAGTL NKMA ALRRVYDQM P+YVISMGSCANGGGYYHYSYSVVRG Sbjct: 78 PRASPRQSDVMIVAGTLCNKMAPALRRVYDQMSNPKYVISMGSCANGGGYYHYSYSVVRG 137 Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 CDRIVPVDIYVPGCPPTAEAL+YG++ LQ+KIRR G ++ Sbjct: 138 CDRIVPVDIYVPGCPPTAEALLYGVMQLQRKIRRTGTIE 176 >gi|218528070|sp|Q2NA61|NUOB_ERYLH RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B Length = 187 Score = 273 bits (699), Expect = 6e-72, Method: Compositional matrix adjust. Identities = 126/168 (75%), Positives = 145/168 (86%), Gaps = 1/168 (0%) Query: 18 SLEKVDAD-FSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPR 76 + + D D F+ + +E+ KGFLVTS + L WARTGSL WMTFGLACCAVEM+ +MPR Sbjct: 19 EVRQPDGDYFNALQTEVNDKGFLVTSTEDLFQWARTGSLWWMTFGLACCAVEMIHVNMPR 78 Query: 77 YDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY 136 YD+ERFG APRASPRQSDVMIVAGTL NKMA ALR+VYDQM +P+YVISMGSCANGGGYY Sbjct: 79 YDMERFGAAPRASPRQSDVMIVAGTLCNKMAPALRKVYDQMSDPKYVISMGSCANGGGYY 138 Query: 137 HYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 HYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG++ LQ+KIRR G ++ Sbjct: 139 HYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGVMQLQRKIRRSGTIE 186 >gi|114327965|ref|YP_745122.1| NADH dehydrogenase subunit B [Granulibacter bethesdensis CGDNIH1] gi|122327073|sp|Q0BSK3|NUOB_GRABC RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|114316139|gb|ABI62199.1| NADH-quinone oxidoreductase chain B [Granulibacter bethesdensis CGDNIH1] Length = 194 Score = 273 bits (699), Expect = 7e-72, Method: Compositional matrix adjust. Identities = 128/161 (79%), Positives = 142/161 (88%) Query: 23 DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82 +A I+ E+ KGF+V ++D+LV WARTGSL MTFGLACCAVEM+ A MPRYDL+RF Sbjct: 31 EAVLRGITGEMADKGFVVANLDKLVNWARTGSLWPMTFGLACCAVEMIHAYMPRYDLDRF 90 Query: 83 GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142 G PRASPRQSDVMIVAGTLTNKMA ALRRVYDQMPEPR+VISMGSCANGGGYYHYSYSV Sbjct: 91 GVIPRASPRQSDVMIVAGTLTNKMAPALRRVYDQMPEPRWVISMGSCANGGGYYHYSYSV 150 Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 VRGCDRIVPVD+YVPGCPPTAEAL+YGI+ LQKKIRR G + Sbjct: 151 VRGCDRIVPVDVYVPGCPPTAEALVYGIMQLQKKIRRTGTI 191 >gi|266656|sp|P29918|NQO6_PARDE RecName: Full=NADH-quinone oxidoreductase subunit 6; AltName: Full=NADH dehydrogenase I subunit 6; AltName: Full=NDH-1 subunit 6 Length = 173 Score = 272 bits (696), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 124/154 (80%), Positives = 138/154 (89%) Query: 23 DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82 D + ++ E+ KGFL+T+ + ++ WAR GSL WMTFGLACCAVEMMQ SMPRYDLERF Sbjct: 12 DLATAELNRELQDKGFLLTTTEDIINWARNGSLHWMTFGLACCAVEMMQTSMPRYDLERF 71 Query: 83 GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142 G APRASPRQSD+MIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSV Sbjct: 72 GTAPRASPRQSDLMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSV 131 Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKK 176 VRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQ++ Sbjct: 132 VRGCDRIVPVDIYVPGCPPTAEALLYGILQLQRR 165 >gi|162148810|ref|YP_001603271.1| NADH dehydrogenase subunit B [Gluconacetobacter diazotrophicus PAl 5] gi|209545442|ref|YP_002277671.1| NADH dehydrogenase subunit B [Gluconacetobacter diazotrophicus PAl 5] gi|221272394|sp|A9HRU3|NUOB2_GLUDA RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName: Full=NADH dehydrogenase I subunit B 2; AltName: Full=NDH-1 subunit B 2 gi|161787387|emb|CAP56982.1| NADH-quinone oxidoreductase chain B [Gluconacetobacter diazotrophicus PAl 5] gi|209533119|gb|ACI53056.1| NADH-quinone oxidoreductase, B subunit [Gluconacetobacter diazotrophicus PAl 5] Length = 191 Score = 270 bits (690), Expect = 6e-71, Method: Compositional matrix adjust. Identities = 128/161 (79%), Positives = 138/161 (85%) Query: 23 DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82 DA I+ EIT KGF+V S+D+LV W RTGSL M+FGLACCAVEM+ A MPRYDL+R Sbjct: 28 DAVIKGITGEITEKGFVVASLDKLVNWGRTGSLWPMSFGLACCAVEMIHAYMPRYDLDRM 87 Query: 83 GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142 G PR SPRQSDVMIVAGTLTNKMA ALRRVYDQM EPR+VISMGSCANGGGYYHYSYSV Sbjct: 88 GIIPRGSPRQSDVMIVAGTLTNKMAPALRRVYDQMAEPRWVISMGSCANGGGYYHYSYSV 147 Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 VRGCDRIVPVD+YVPGCPPTAEALIYGI LQKKIRR G + Sbjct: 148 VRGCDRIVPVDVYVPGCPPTAEALIYGIFQLQKKIRRTGTI 188 >gi|330994055|ref|ZP_08317985.1| NADH-quinone oxidoreductase subunit B 2 [Gluconacetobacter sp. SXCC-1] gi|329759001|gb|EGG75515.1| NADH-quinone oxidoreductase subunit B 2 [Gluconacetobacter sp. SXCC-1] Length = 192 Score = 269 bits (688), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 127/162 (78%), Positives = 140/162 (86%) Query: 23 DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82 DA I+ E+T KGF+V ++D+LV W RTGSL M+FGLACCAVEM+ A MPRYDL+R Sbjct: 29 DAVIKGITGEMTEKGFVVANLDRLVNWGRTGSLWPMSFGLACCAVEMIHAYMPRYDLDRM 88 Query: 83 GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142 G PR SPRQSDVMIVAGTLTNKMA ALRRVYDQM EPR+VISMGSCANGGGYYHYSYSV Sbjct: 89 GIIPRGSPRQSDVMIVAGTLTNKMAPALRRVYDQMAEPRWVISMGSCANGGGYYHYSYSV 148 Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 VRGCDRIVPVD+YVPGCPPTAEALIYGIL LQKKIRR G ++ Sbjct: 149 VRGCDRIVPVDVYVPGCPPTAEALIYGILQLQKKIRRTGTIR 190 >gi|148259933|ref|YP_001234060.1| NADH dehydrogenase subunit B [Acidiphilium cryptum JF-5] gi|326403113|ref|YP_004283194.1| NADH-quinone oxidoreductase subunit B [Acidiphilium multivorum AIU301] gi|218527971|sp|A5FX09|NUOB1_ACICJ RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName: Full=NADH dehydrogenase I subunit B 1; AltName: Full=NDH-1 subunit B 1 gi|146401614|gb|ABQ30141.1| NADH dehydrogenase subunit B [Acidiphilium cryptum JF-5] gi|325049974|dbj|BAJ80312.1| NADH-quinone oxidoreductase subunit B [Acidiphilium multivorum AIU301] Length = 186 Score = 269 bits (687), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 126/155 (81%), Positives = 138/155 (89%) Query: 29 ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88 I+ EI KGF+V ++D+LV WARTGSL MTFGLACCAVEM+ A MPR+DL+RFG PR Sbjct: 29 ITGEIAGKGFVVANLDRLVNWARTGSLWPMTFGLACCAVEMIHAYMPRWDLDRFGIIPRN 88 Query: 89 SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 148 SPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDR Sbjct: 89 SPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDR 148 Query: 149 IVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 IVPVDIYVPGCPPTAEAL+YGI LQKKIRR G + Sbjct: 149 IVPVDIYVPGCPPTAEALVYGITQLQKKIRRTGTI 183 >gi|296536155|ref|ZP_06898283.1| NADH dehydrogenase (ubiquinone) subunit B [Roseomonas cervicalis ATCC 49957] gi|296263526|gb|EFH10023.1| NADH dehydrogenase (ubiquinone) subunit B [Roseomonas cervicalis ATCC 49957] Length = 184 Score = 268 bits (685), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 125/161 (77%), Positives = 140/161 (86%) Query: 23 DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82 DA +S EI KGF+V ++D++V WARTGSL MTFGLACCAV M+ A MPRYDL+RF Sbjct: 21 DAVIKGVSGEIEDKGFIVANLDKVVNWARTGSLWPMTFGLACCAVPMIHAYMPRYDLDRF 80 Query: 83 GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142 G PR SPRQSDVMIVAGTLTNKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSYSV Sbjct: 81 GVIPRGSPRQSDVMIVAGTLTNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYSV 140 Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 VRGCDR+VPVD+YVPGCPPTAEAL+YGIL LQKKIRR G++ Sbjct: 141 VRGCDRVVPVDVYVPGCPPTAEALVYGILQLQKKIRRTGSI 181 >gi|296116534|ref|ZP_06835144.1| NADH dehydrogenase subunit B [Gluconacetobacter hansenii ATCC 23769] gi|295976746|gb|EFG83514.1| NADH dehydrogenase subunit B [Gluconacetobacter hansenii ATCC 23769] Length = 192 Score = 268 bits (685), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 126/161 (78%), Positives = 139/161 (86%) Query: 23 DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82 DA ++ EIT KGF+V ++D++V W RTGSL M+FGLACCAVEM+ A MPRYDL+R Sbjct: 29 DAVIRGVTGEITEKGFVVANLDKIVNWGRTGSLWPMSFGLACCAVEMIHAYMPRYDLDRM 88 Query: 83 GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142 G PR SPRQSDVMIVAGTLTNKMA ALRRVYDQM EPR+VISMGSCANGGGYYHYSYSV Sbjct: 89 GIIPRGSPRQSDVMIVAGTLTNKMAPALRRVYDQMAEPRWVISMGSCANGGGYYHYSYSV 148 Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 VRGCDRIVPVD+YVPGCPPTAEALIYGIL LQKKIRR G + Sbjct: 149 VRGCDRIVPVDVYVPGCPPTAEALIYGILQLQKKIRRTGTI 189 >gi|295689628|ref|YP_003593321.1| NADH-quinone oxidoreductase subunit B [Caulobacter segnis ATCC 21756] gi|295431531|gb|ADG10703.1| NADH-quinone oxidoreductase, B subunit [Caulobacter segnis ATCC 21756] Length = 192 Score = 268 bits (685), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 133/162 (82%), Positives = 147/162 (90%) Query: 23 DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82 D F +S ++ KGF+ + D L+TWARTGSLMWMTFGLACCAVEMMQASMPRYDLER+ Sbjct: 30 DPFFDGVSQQLADKGFITAAADDLITWARTGSLMWMTFGLACCAVEMMQASMPRYDLERY 89 Query: 83 GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142 GFAPRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYY+YSYSV Sbjct: 90 GFAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYYYSYSV 149 Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 VRGCDR+VPVDIYVPGCPPTAEAL+YG+L LQKKIRR G ++ Sbjct: 150 VRGCDRVVPVDIYVPGCPPTAEALVYGVLQLQKKIRRTGTIE 191 >gi|221234969|ref|YP_002517405.1| NADH dehydrogenase subunit B [Caulobacter crescentus NA1000] gi|238055282|sp|B8GWV5|NUOB_CAUCN RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|220964141|gb|ACL95497.1| NADH-quinone oxidoreductase chain B [Caulobacter crescentus NA1000] Length = 200 Score = 268 bits (685), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 133/162 (82%), Positives = 147/162 (90%) Query: 23 DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82 D F +S ++ KGF+ + D L+TWARTGSLMWMTFGLACCAVEMMQASMPRYDLER+ Sbjct: 38 DPFFDGVSQQLADKGFITAAADDLITWARTGSLMWMTFGLACCAVEMMQASMPRYDLERY 97 Query: 83 GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142 GFAPRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYY+YSYSV Sbjct: 98 GFAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYYYSYSV 157 Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 VRGCDR+VPVDIYVPGCPPTAEAL+YG+L LQKKIRR G ++ Sbjct: 158 VRGCDRVVPVDIYVPGCPPTAEALVYGVLQLQKKIRRTGTIE 199 >gi|16126198|ref|NP_420762.1| NADH dehydrogenase subunit B [Caulobacter crescentus CB15] gi|81621086|sp|Q9A6X1|NUOB_CAUCR RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|13423414|gb|AAK23930.1| NADH dehydrogenase I, B subunit [Caulobacter crescentus CB15] Length = 193 Score = 268 bits (684), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 133/162 (82%), Positives = 147/162 (90%) Query: 23 DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82 D F +S ++ KGF+ + D L+TWARTGSLMWMTFGLACCAVEMMQASMPRYDLER+ Sbjct: 31 DPFFDGVSQQLADKGFITAAADDLITWARTGSLMWMTFGLACCAVEMMQASMPRYDLERY 90 Query: 83 GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142 GFAPRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYY+YSYSV Sbjct: 91 GFAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYYYSYSV 150 Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 VRGCDR+VPVDIYVPGCPPTAEAL+YG+L LQKKIRR G ++ Sbjct: 151 VRGCDRVVPVDIYVPGCPPTAEALVYGVLQLQKKIRRTGTIE 192 >gi|167646797|ref|YP_001684460.1| NADH dehydrogenase subunit B [Caulobacter sp. K31] gi|218527984|sp|B0SZ51|NUOB_CAUSK RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|167349227|gb|ABZ71962.1| NADH-quinone oxidoreductase, B subunit [Caulobacter sp. K31] Length = 196 Score = 264 bits (674), Expect = 5e-69, Method: Compositional matrix adjust. Identities = 130/162 (80%), Positives = 146/162 (90%) Query: 23 DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82 D F +S ++ KGF+ + D L+TWARTGSLMWMTFGLACCAVEMM ++MPRYDLER+ Sbjct: 34 DPYFDGLSGQLADKGFVTAAADDLITWARTGSLMWMTFGLACCAVEMMHSAMPRYDLERY 93 Query: 83 GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142 GFAPRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYY+YSYSV Sbjct: 94 GFAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYYYSYSV 153 Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 VRGCDRIVP+DIYVPGCPPTAEAL+YG+L LQKKIRR G ++ Sbjct: 154 VRGCDRIVPIDIYVPGCPPTAEALVYGVLQLQKKIRRTGTIE 195 >gi|83311885|ref|YP_422149.1| NADH dehydrogenase subunit B [Magnetospirillum magneticum AMB-1] gi|123541537|sp|Q2W3I5|NUOB_MAGMM RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|82946726|dbj|BAE51590.1| NADH:ubiquinone oxidoreductase 20 kD subunit and related Fe-S oxidoreductase [Magnetospirillum magneticum AMB-1] Length = 186 Score = 261 bits (667), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 124/161 (77%), Positives = 139/161 (86%) Query: 23 DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82 DA +++EI+ KGF++ SVD +V WARTGSL MTFGLACCAVEMM A RYD++RF Sbjct: 24 DALLKAVTTEISDKGFVLASVDAVVNWARTGSLWPMTFGLACCAVEMMHAGCSRYDMDRF 83 Query: 83 GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142 G R SPRQSD+MIVAGTLTNKMA ALRRVYDQM EPR+VISMGSCANGGGYYHYSYSV Sbjct: 84 GVVFRPSPRQSDLMIVAGTLTNKMAPALRRVYDQMAEPRWVISMGSCANGGGYYHYSYSV 143 Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 VRGCDRIVPVDIYVPGCPP+AEAL+YGIL LQKKIRR G++ Sbjct: 144 VRGCDRIVPVDIYVPGCPPSAEALMYGILQLQKKIRRTGSI 184 >gi|46202360|ref|ZP_00053337.2| COG0377: NADH:ubiquinone oxidoreductase 20 kD subunit and related Fe-S oxidoreductases [Magnetospirillum magnetotacticum MS-1] Length = 186 Score = 261 bits (666), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 124/161 (77%), Positives = 139/161 (86%) Query: 23 DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82 DA +++EI+ KGF++ SVD +V WARTGSL MTFGLACCAVEMM A RYD++RF Sbjct: 24 DALLKAVTTEISDKGFVLASVDAVVNWARTGSLWPMTFGLACCAVEMMHAGCSRYDMDRF 83 Query: 83 GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142 G R SPRQSD+MIVAGTLTNKMA ALRRVYDQM EPR+VISMGSCANGGGYYHYSYSV Sbjct: 84 GVVFRPSPRQSDLMIVAGTLTNKMAPALRRVYDQMAEPRWVISMGSCANGGGYYHYSYSV 143 Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 VRGCDRIVPVDIYVPGCPP+AEAL+YGIL LQKKIRR G++ Sbjct: 144 VRGCDRIVPVDIYVPGCPPSAEALMYGILQLQKKIRRTGSI 184 >gi|258542721|ref|YP_003188154.1| NADH dehydrogenase subunit B [Acetobacter pasteurianus IFO 3283-01] gi|256633799|dbj|BAH99774.1| NADH-quinone oxidoreductase chain B [Acetobacter pasteurianus IFO 3283-01] gi|256636858|dbj|BAI02827.1| NADH-quinone oxidoreductase chain B [Acetobacter pasteurianus IFO 3283-03] gi|256639911|dbj|BAI05873.1| NADH-quinone oxidoreductase chain B [Acetobacter pasteurianus IFO 3283-07] gi|256642967|dbj|BAI08922.1| NADH-quinone oxidoreductase chain B [Acetobacter pasteurianus IFO 3283-22] gi|256646022|dbj|BAI11970.1| NADH-quinone oxidoreductase chain B [Acetobacter pasteurianus IFO 3283-26] gi|256649075|dbj|BAI15016.1| NADH-quinone oxidoreductase chain B [Acetobacter pasteurianus IFO 3283-32] gi|256652062|dbj|BAI17996.1| NADH-quinone oxidoreductase chain B [Acetobacter pasteurianus IFO 3283-01-42C] gi|256655119|dbj|BAI21046.1| NADH-quinone oxidoreductase chain B [Acetobacter pasteurianus IFO 3283-12] Length = 186 Score = 261 bits (666), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 122/161 (75%), Positives = 137/161 (85%) Query: 23 DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82 DA I+ + KGF+V ++D+LV W RTGSL M+FGLACCAVEM+ A MPRYDL+R Sbjct: 23 DAVVRGITGVLAEKGFVVANLDKLVNWGRTGSLWPMSFGLACCAVEMIHAYMPRYDLDRM 82 Query: 83 GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142 G PR SPRQSDVMIVAGTLTNKMA LRR+Y+QM EPR+VISMGSCANGGGYYHYSYSV Sbjct: 83 GIIPRGSPRQSDVMIVAGTLTNKMAPVLRRLYEQMAEPRWVISMGSCANGGGYYHYSYSV 142 Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 VRGCDRIVPVD+YVPGCPPTAEALIYGI+LLQKKIRR G + Sbjct: 143 VRGCDRIVPVDVYVPGCPPTAEALIYGIMLLQKKIRRTGTI 183 >gi|329114679|ref|ZP_08243438.1| NADH-quinone oxidoreductase subunit B 2 [Acetobacter pomorum DM001] gi|326696159|gb|EGE47841.1| NADH-quinone oxidoreductase subunit B 2 [Acetobacter pomorum DM001] Length = 186 Score = 261 bits (666), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 122/161 (75%), Positives = 137/161 (85%) Query: 23 DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82 DA I+ + KGF+V ++D+LV W RTGSL M+FGLACCAVEM+ A MPRYDL+R Sbjct: 23 DAVVRGITGVLAEKGFVVANLDKLVNWGRTGSLWPMSFGLACCAVEMIHAYMPRYDLDRM 82 Query: 83 GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142 G PR SPRQSDVMIVAGTLTNKMA LRR+Y+QM EPR+VISMGSCANGGGYYHYSYSV Sbjct: 83 GIIPRGSPRQSDVMIVAGTLTNKMAPVLRRLYEQMAEPRWVISMGSCANGGGYYHYSYSV 142 Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 VRGCDRIVPVD+YVPGCPPTAEALIYGI+LLQKKIRR G + Sbjct: 143 VRGCDRIVPVDVYVPGCPPTAEALIYGIMLLQKKIRRTGTI 183 >gi|144899466|emb|CAM76330.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit [Magnetospirillum gryphiswaldense MSR-1] Length = 186 Score = 259 bits (662), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 126/186 (67%), Positives = 149/186 (80%), Gaps = 5/186 (2%) Query: 1 MGLTTVNQKIISGQSSCSLEK---VDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMW 57 MG+T N +++ + L + D+ ++ E+ KGF++ +VD+LV WARTGSL Sbjct: 1 MGVT--NSGLVTPAHAAPLPQGAAQDSVLKLVTDELEDKGFVLANVDKLVNWARTGSLWP 58 Query: 58 MTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQM 117 MTFGLACCAVEM+ A RYD++RFG R SPRQSDVMIVAGTLTNKMA ALRRVYDQM Sbjct: 59 MTFGLACCAVEMIHAGCSRYDMDRFGVVFRPSPRQSDVMIVAGTLTNKMAPALRRVYDQM 118 Query: 118 PEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 EPR+VISMGSCANGGGYYHYSYSVVRGCDR+VPVD+YVPGCPPTAEAL+YGIL LQKKI Sbjct: 119 AEPRWVISMGSCANGGGYYHYSYSVVRGCDRVVPVDVYVPGCPPTAEALLYGILQLQKKI 178 Query: 178 RRVGNV 183 RR G++ Sbjct: 179 RRTGSI 184 >gi|194595689|gb|ACF77132.1| NADH dehydrogenase subunit B [Azospirillum brasilense] Length = 180 Score = 259 bits (661), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 124/160 (77%), Positives = 135/160 (84%), Gaps = 1/160 (0%) Query: 23 DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82 DA ++ EI KGF+ + ++ WARTGSL MTFGLACCAVEM+ A M RYDL+RF Sbjct: 18 DAYLRAVTEEIQEKGFITAKYEDVLAWARTGSLWPMTFGLACCAVEMIHAYMSRYDLDRF 77 Query: 83 GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142 G PR SPRQSD MIVAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSV Sbjct: 78 GVIPRPSPRQSDCMIVAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSV 137 Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182 VRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQKKIRR GN Sbjct: 138 VRGCDRIVPVDIYVPGCPPTAEALVYGILQLQKKIRR-GN 176 >gi|288958988|ref|YP_003449329.1| NADH dehydrogenase I chain B [Azospirillum sp. B510] gi|288911296|dbj|BAI72785.1| NADH dehydrogenase I chain B [Azospirillum sp. B510] Length = 188 Score = 258 bits (659), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 124/160 (77%), Positives = 136/160 (85%), Gaps = 1/160 (0%) Query: 23 DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82 DA +S EI KGF++ + L+ WARTGSL MTFGLACCAVEM+ A M RYDL+RF Sbjct: 26 DAYIRAVSDEIQDKGFVLAKYEDLLAWARTGSLWPMTFGLACCAVEMIHAYMSRYDLDRF 85 Query: 83 GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142 G PR SPRQSD MIVAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSY+V Sbjct: 86 GVIPRPSPRQSDCMIVAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYAV 145 Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182 VRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQKKI+R GN Sbjct: 146 VRGCDRIVPVDIYVPGCPPTAEALVYGILQLQKKIKR-GN 184 >gi|163793188|ref|ZP_02187164.1| excinuclease ABC subunit A [alpha proteobacterium BAL199] gi|159181834|gb|EDP66346.1| excinuclease ABC subunit A [alpha proteobacterium BAL199] Length = 179 Score = 257 bits (657), Expect = 5e-67, Method: Compositional matrix adjust. Identities = 123/183 (67%), Positives = 141/183 (77%), Gaps = 6/183 (3%) Query: 1 MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTF 60 MG+ + + +G + DA S +S EI KGF++ D+L WAR GSL MTF Sbjct: 1 MGVINAERPVPAGANQ------DAILSAVSDEIREKGFVIAQADKLFNWARCGSLWPMTF 54 Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 GLACCAVEMM + RYDL+RFG R SPRQSDVMIVAGTLTNKMA ALR+VYDQM EP Sbjct: 55 GLACCAVEMMHTAASRYDLDRFGLVFRPSPRQSDVMIVAGTLTNKMAPALRKVYDQMAEP 114 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 R+VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG+L LQ+KI+R Sbjct: 115 RWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGVLQLQRKIKRT 174 Query: 181 GNV 183 + Sbjct: 175 ATI 177 >gi|294083712|ref|YP_003550469.1| NADH:ubiquinone oxidoreductase 20 kD subunit and related Fe-S oxidoreductase [Candidatus Puniceispirillum marinum IMCC1322] gi|292663284|gb|ADE38385.1| NADH:ubiquinone oxidoreductase 20 kD subunit and related Fe-S oxidoreductase [Candidatus Puniceispirillum marinum IMCC1322] Length = 182 Score = 256 bits (655), Expect = 7e-67, Method: Compositional matrix adjust. Identities = 118/161 (73%), Positives = 136/161 (84%) Query: 23 DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82 DA + EIT++GF++ D+L WAR+GSL MTFGLACCAVEMM ++ RYD++R+ Sbjct: 19 DAILKAVGDEITNRGFVIAKADKLFNWARSGSLWPMTFGLACCAVEMMHSAASRYDMDRY 78 Query: 83 GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142 G R SPRQSDVMIVAGTLTNKMA ALRRVYDQMPEPR+V+SMGSCANGGGYYHYSY+V Sbjct: 79 GMLFRPSPRQSDVMIVAGTLTNKMAPALRRVYDQMPEPRWVLSMGSCANGGGYYHYSYAV 138 Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 VRGCDRIVPVD+YVPGCPPTAEALIYG+L LQKKIRR + Sbjct: 139 VRGCDRIVPVDVYVPGCPPTAEALIYGLLQLQKKIRRTATI 179 >gi|147902669|ref|NP_001087274.1| MGC85267 protein [Xenopus laevis] gi|51873813|gb|AAH78494.1| MGC85267 protein [Xenopus laevis] Length = 217 Score = 254 bits (650), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 120/154 (77%), Positives = 136/154 (88%), Gaps = 1/154 (0%) Query: 27 SRISSEITHKG-FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA 85 ++ SS ++KG F++T +D+LV WAR SL MTFGLACCAVEMM + PRYD++RFG Sbjct: 54 AKKSSLPSNKGEFVITKLDELVNWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVV 113 Query: 86 PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRG 145 RASPRQ+DVMIVAGTLTNKMA ALR+VYDQMPEPRYV+SMGSCANGGGYYHYSYSVVRG Sbjct: 114 FRASPRQADVMIVAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGYYHYSYSVVRG 173 Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179 CDRIVPVDIYVPGCPPTAEAL+YGIL LQKKI+R Sbjct: 174 CDRIVPVDIYVPGCPPTAEALLYGILQLQKKIKR 207 >gi|118404166|ref|NP_001072396.1| NADH dehydrogenase (ubiquinone) Fe-S protein 7, 20kDa (NADH-coenzyme Q reductase) [Xenopus (Silurana) tropicalis] gi|113197754|gb|AAI21597.1| hypothetical protein MGC147194 [Xenopus (Silurana) tropicalis] Length = 217 Score = 254 bits (648), Expect = 5e-66, Method: Compositional matrix adjust. Identities = 121/166 (72%), Positives = 140/166 (84%), Gaps = 1/166 (0%) Query: 20 EKVDADFSRISSEITHKG-FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78 +K A ++ S ++KG F++T +D+LV WAR SL MTFGLACCAVEMM + PRYD Sbjct: 47 QKSSAVTAKKSLLPSNKGEFVITKLDELVNWARRSSLWPMTFGLACCAVEMMHMAAPRYD 106 Query: 79 LERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY 138 ++RFG RASPRQ+DVMIVAGTLTNKMA ALR+VYDQMPEPRYV+SMGSCANGGGYYHY Sbjct: 107 MDRFGVVFRASPRQADVMIVAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGYYHY 166 Query: 139 SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 SYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQKKI+R ++ Sbjct: 167 SYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKIKREKRLR 212 >gi|315583009|ref|NP_001186841.1| NADH dehydrogenase (ubiquinone) Fe-S protein 7, (NADH-coenzyme Q reductase) [Danio rerio] Length = 217 Score = 253 bits (647), Expect = 7e-66, Method: Compositional matrix adjust. Identities = 124/175 (70%), Positives = 143/175 (81%), Gaps = 4/175 (2%) Query: 14 QSSCSL---EKVDADFSRISSEITHKG-FLVTSVDQLVTWARTGSLMWMTFGLACCAVEM 69 SSC + EK A ++ +S ++ KG +++T +D LV WAR SL MTFGLACCAVEM Sbjct: 38 NSSCLVPFREKSTALAAKPASAVSSKGEYVITKLDDLVNWARRSSLWPMTFGLACCAVEM 97 Query: 70 MQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSC 129 M + PRYD++RFG RASPRQ+DVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSC Sbjct: 98 MHMAAPRYDMDRFGVVFRASPRQADVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSC 157 Query: 130 ANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 ANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG L LQ+KI+R +K Sbjct: 158 ANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGTLQLQRKIKREKRMK 212 >gi|138519723|gb|AAI35870.1| hypothetical protein MGC147194 [Xenopus (Silurana) tropicalis] Length = 217 Score = 253 bits (646), Expect = 9e-66, Method: Compositional matrix adjust. Identities = 120/166 (72%), Positives = 140/166 (84%), Gaps = 1/166 (0%) Query: 20 EKVDADFSRISSEITHKG-FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78 +K A ++ S ++KG F++T +D+LV WAR SL MTFGLACCAVEMM + PRYD Sbjct: 47 QKSSAVTAKKSLLPSNKGEFVITKLDELVNWARRSSLWPMTFGLACCAVEMMHMAAPRYD 106 Query: 79 LERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY 138 ++RFG RASPRQ+DVM+VAGTLTNKMA ALR+VYDQMPEPRYV+SMGSCANGGGYYHY Sbjct: 107 MDRFGVVFRASPRQADVMVVAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGYYHY 166 Query: 139 SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 SYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQKKI+R ++ Sbjct: 167 SYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKIKREKRLR 212 >gi|153875120|ref|ZP_02003055.1| NADH-quinone oxidoreductase, B subunit [Beggiatoa sp. PS] gi|152068417|gb|EDN66946.1| NADH-quinone oxidoreductase, B subunit [Beggiatoa sp. PS] Length = 160 Score = 253 bits (645), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 117/151 (77%), Positives = 130/151 (86%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 I +GF+ T+ D+L+ WARTGS+ MTFGLACCAVEMMQA RYDL+RFG R SPRQ Sbjct: 6 ILQEGFVTTTADRLINWARTGSMWPMTFGLACCAVEMMQAGASRYDLDRFGIVFRPSPRQ 65 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 SDVMIVAGTLTNKMA ALR+VYDQMP PR+VISMGSCANGGGYYHYSYSVVRGCDRIVPV Sbjct: 66 SDVMIVAGTLTNKMAPALRKVYDQMPNPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPV 125 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 DIY+PGCPPTAEAL+YGIL LQ KI+R + Sbjct: 126 DIYIPGCPPTAEALLYGILQLQNKIKRTNTI 156 >gi|318054193|ref|NP_001187743.1| mitochondrial NADH dehydrogenase (ubiquinone) iron-sulfur protein 7 [Ictalurus punctatus] gi|308323857|gb|ADO29064.1| mitochondrial NADH dehydrogenase (ubiquinone) iron-sulfur protein 7 [Ictalurus punctatus] Length = 217 Score = 253 bits (645), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 120/166 (72%), Positives = 138/166 (83%), Gaps = 1/166 (0%) Query: 20 EKVDADFSRISSEITHKG-FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78 EK A + +S ++ KG +++T +D LV WAR SL MTFGLACCAVEMM + PRYD Sbjct: 47 EKSTAVALKPTSAVSSKGEYVITKLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPRYD 106 Query: 79 LERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY 138 ++RFG RASPRQ+DVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHY Sbjct: 107 MDRFGVVFRASPRQADVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHY 166 Query: 139 SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 SYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG L LQ+KI+R ++ Sbjct: 167 SYSVVRGCDRIVPVDIYVPGCPPTAEALLYGTLQLQRKIKREKKMR 212 >gi|148236498|ref|NP_001088930.1| NADH dehydrogenase (ubiquinone) Fe-S protein 7, 20kDa (NADH-coenzyme Q reductase) [Xenopus laevis] gi|57032922|gb|AAH88820.1| LOC496303 protein [Xenopus laevis] Length = 180 Score = 252 bits (644), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 119/160 (74%), Positives = 137/160 (85%), Gaps = 1/160 (0%) Query: 26 FSRISSEITHKG-FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF 84 + +S ++KG F++T +D+LV WAR SL MTFGLACCAVEMM + PRYD++RFG Sbjct: 16 LQKKTSLPSNKGEFVITKLDELVNWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGV 75 Query: 85 APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR 144 RASPRQ+DVMIVAGTLTNKMA ALR+VYDQMPEPRYV+SMGSCANGGGYYHYSYSVVR Sbjct: 76 VFRASPRQADVMIVAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGYYHYSYSVVR 135 Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 GCDRIVPVDIYVPGCPPTAEAL+YGIL LQKKI+R ++ Sbjct: 136 GCDRIVPVDIYVPGCPPTAEALLYGILQLQKKIKREKRLR 175 >gi|289207894|ref|YP_003459960.1| NADH-quinone oxidoreductase subunit beta [Thioalkalivibrio sp. K90mix] gi|288943525|gb|ADC71224.1| NADH-quinone oxidoreductase, B subunit [Thioalkalivibrio sp. K90mix] Length = 158 Score = 251 bits (642), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 117/151 (77%), Positives = 129/151 (85%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 + KGF+ TS D+L+ WARTGSL MTFGLACCAVEMM A RYDL+RFG R SPRQ Sbjct: 6 VLEKGFVTTSADKLINWARTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGIIFRPSPRQ 65 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 SDVMIVAGTL NKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSY+VVRGCDRIVPV Sbjct: 66 SDVMIVAGTLVNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYAVVRGCDRIVPV 125 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 D+YVPGCPPTAEAL+YGI+ LQ KIRR + Sbjct: 126 DVYVPGCPPTAEALLYGIIQLQNKIRRTNTI 156 >gi|308321280|gb|ADO27792.1| mitochondrial NADH dehydrogenase iron-sulfur protein 7 [Ictalurus furcatus] Length = 217 Score = 251 bits (641), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 117/151 (77%), Positives = 132/151 (87%), Gaps = 1/151 (0%) Query: 30 SSEITHKG-FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88 +S ++ KG +++T +D LV WAR SL MTFGLACCAVEMM + PRYD++RFG RA Sbjct: 57 TSAVSSKGEYVITKLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRA 116 Query: 89 SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 148 SPRQ+DVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR Sbjct: 117 SPRQADVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 176 Query: 149 IVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179 IVPVDIYVPGCPPTAEAL+YG L LQ+KI+R Sbjct: 177 IVPVDIYVPGCPPTAEALLYGTLQLQRKIKR 207 >gi|320167168|gb|EFW44067.1| NADH2 dehydrogenase subunit 22K [Capsaspora owczarzaki ATCC 30864] Length = 206 Score = 251 bits (641), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 116/166 (69%), Positives = 133/166 (80%) Query: 19 LEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78 + + + F + F ++ +D LV W RTGS+ MTFGLACCAVEMMQA+ RYD Sbjct: 36 FKPIKSSFPASLAPANQAEFALSKLDALVNWGRTGSVWPMTFGLACCAVEMMQAAAARYD 95 Query: 79 LERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY 138 +RFG RASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHY Sbjct: 96 FDRFGIVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHY 155 Query: 139 SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 SY+VVRGCDRIVPVD+YVPGCPPTAEAL+YGIL LQKKI+R + Sbjct: 156 SYAVVRGCDRIVPVDVYVPGCPPTAEALLYGILQLQKKIKRSNQAQ 201 >gi|198284143|ref|YP_002220464.1| NADH dehydrogenase subunit B [Acidithiobacillus ferrooxidans ATCC 53993] gi|218667459|ref|YP_002426797.1| NADH-quinone oxidoreductase, B subunit [Acidithiobacillus ferrooxidans ATCC 23270] gi|218527940|sp|B5EM21|NUOB1_ACIF5 RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName: Full=NADH dehydrogenase I subunit B 1; AltName: Full=NDH-1 subunit B 1 gi|238065067|sp|B7J6H2|NUOB_ACIF2 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|198248664|gb|ACH84257.1| NADH-quinone oxidoreductase, B subunit [Acidithiobacillus ferrooxidans ATCC 53993] gi|218519672|gb|ACK80258.1| NADH-quinone oxidoreductase, B subunit [Acidithiobacillus ferrooxidans ATCC 23270] Length = 158 Score = 251 bits (641), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 117/151 (77%), Positives = 130/151 (86%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 I KGF+ TS+D +V W+RTGSL MTFGLACCAVEMM A RYDL+RFG R SPRQ Sbjct: 6 ILEKGFVTTSIDTVVNWSRTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGLLFRPSPRQ 65 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 SD+MIVAGTL NKMA ALR+VYDQMPEPR+V+SMGSCANGGGYYHYSYSVVRGCDRIVPV Sbjct: 66 SDLMIVAGTLVNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIVPV 125 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 DIYVPGCPPTAEALI+G++ LQKKIRR + Sbjct: 126 DIYVPGCPPTAEALIFGLIQLQKKIRRTNTI 156 >gi|117926908|ref|YP_867525.1| NADH-quinone oxidoreductase subunit beta [Magnetococcus sp. MC-1] gi|238065166|sp|A0LDS6|NUOB_MAGSM RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|117610664|gb|ABK46119.1| NADH dehydrogenase subunit B [Magnetococcus sp. MC-1] Length = 167 Score = 251 bits (641), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 116/158 (73%), Positives = 133/158 (84%) Query: 26 FSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA 85 + E++ +GFL+TS D+LV W R+ S+ MTFGLACCAVEMM A RYDL+RFG Sbjct: 2 IEELHQEVSDRGFLLTSADKLVNWGRSMSMWPMTFGLACCAVEMMNAGASRYDLDRFGVV 61 Query: 86 PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRG 145 R SPRQSDV+IVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRG Sbjct: 62 FRGSPRQSDVIIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRG 121 Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 CDRI+PVD+Y+PGCPPTAEA++YGI+ LQKKI R G V Sbjct: 122 CDRILPVDVYIPGCPPTAEAVMYGIMQLQKKINREGQV 159 >gi|157964436|ref|YP_001499260.1| NADH dehydrogenase subunit B [Rickettsia massiliae MTU5] gi|218528019|sp|A8F1C7|NUOB_RICM5 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|157844212|gb|ABV84713.1| NADH dehydrogenase I chain B [Rickettsia massiliae MTU5] Length = 174 Score = 251 bits (641), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 114/156 (73%), Positives = 136/156 (87%) Query: 29 ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88 +S+E++++GFL+T VD ++ WAR SL MTFGLACCAVEMMQA+ RYD++RFG R Sbjct: 12 LSNELSNRGFLLTKVDNVIGWARANSLWPMTFGLACCAVEMMQAAASRYDMDRFGMLFRP 71 Query: 89 SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 148 SPRQSD+MIVAGTLTNKMA ALR+VYDQM EP++V+SMGSCANGGGYYH+SYSVVRGCDR Sbjct: 72 SPRQSDLMIVAGTLTNKMAPALRKVYDQMAEPKWVLSMGSCANGGGYYHFSYSVVRGCDR 131 Query: 149 IVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 IVPVD+YVPGCPPTAEALIYG++ LQKKI+R K Sbjct: 132 IVPVDVYVPGCPPTAEALIYGLMQLQKKIKRTTGFK 167 >gi|150406467|ref|YP_001315111.1| NADH dehydrogenase subunit 10 [Chlorokybus atmophyticus] gi|126507704|gb|ABO15101.1| NADH dehydrogenase subunit 10 [Chlorokybus atmophyticus] Length = 158 Score = 251 bits (640), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 118/147 (80%), Positives = 128/147 (87%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 +L++ VDQL+ WAR GSL MTFGLACCAVEMM RYDL+RFG R SPRQSDVMI Sbjct: 7 YLISKVDQLIHWARKGSLWPMTFGLACCAVEMMHTGASRYDLDRFGIIFRPSPRQSDVMI 66 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP Sbjct: 67 VAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 126 Query: 158 GCPPTAEALIYGILLLQKKIRRVGNVK 184 GCPPTAEAL+YGIL LQKK++R N K Sbjct: 127 GCPPTAEALLYGILQLQKKMKRTKNTK 153 >gi|15892407|ref|NP_360121.1| NADH dehydrogenase subunit B [Rickettsia conorii str. Malish 7] gi|34580591|ref|ZP_00142071.1| NADH dehydrogenase I chain B [Rickettsia sibirica 246] gi|157828358|ref|YP_001494600.1| NADH dehydrogenase subunit B [Rickettsia rickettsii str. 'Sheila Smith'] gi|165933066|ref|YP_001649855.1| NADH dehydrogenase subunit B [Rickettsia rickettsii str. Iowa] gi|238651035|ref|YP_002916892.1| NADH dehydrogenase subunit B [Rickettsia peacockii str. Rustic] gi|20139043|sp|Q92ID6|NUOB_RICCN RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|218528020|sp|B0BX73|NUOB_RICRO RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|218528021|sp|A8GRR7|NUOB_RICRS RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|259514688|sp|C4K2P3|NUOB_RICPU RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|15619558|gb|AAL03022.1| NADH dehydrogenase I chain B [Rickettsia conorii str. Malish 7] gi|28261976|gb|EAA25480.1| NADH dehydrogenase I chain B [Rickettsia sibirica 246] gi|157800839|gb|ABV76092.1| NADH dehydrogenase subunit B [Rickettsia rickettsii str. 'Sheila Smith'] gi|165908153|gb|ABY72449.1| NADH-quinone oxidoreductase chain B [Rickettsia rickettsii str. Iowa] gi|238625133|gb|ACR47839.1| NADH dehydrogenase subunit B [Rickettsia peacockii str. Rustic] Length = 174 Score = 251 bits (640), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 114/156 (73%), Positives = 136/156 (87%) Query: 29 ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88 +S+E++++GFL+T VD ++ WAR SL MTFGLACCAVEMMQA+ RYD++RFG R Sbjct: 12 LSNELSNRGFLLTKVDDVIGWARANSLWPMTFGLACCAVEMMQAAASRYDMDRFGMLFRP 71 Query: 89 SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 148 SPRQSD+MIVAGTLTNKMA ALR+VYDQM EP++V+SMGSCANGGGYYH+SYSVVRGCDR Sbjct: 72 SPRQSDLMIVAGTLTNKMAPALRKVYDQMAEPKWVLSMGSCANGGGYYHFSYSVVRGCDR 131 Query: 149 IVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 IVPVD+YVPGCPPTAEALIYG++ LQKKI+R K Sbjct: 132 IVPVDVYVPGCPPTAEALIYGLMQLQKKIKRTTGFK 167 >gi|229586623|ref|YP_002845124.1| NADH dehydrogenase subunit B [Rickettsia africae ESF-5] gi|259514686|sp|C3PN71|NUOB_RICAE RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|228021673|gb|ACP53381.1| NADH dehydrogenase I chain B [Rickettsia africae ESF-5] Length = 174 Score = 251 bits (640), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 114/156 (73%), Positives = 136/156 (87%) Query: 29 ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88 +S+E++++GFL+T VD ++ WAR SL MTFGLACCAVEMMQA+ RYD++RFG R Sbjct: 12 LSNELSNRGFLLTKVDDVIGWARANSLWPMTFGLACCAVEMMQAAASRYDMDRFGMLFRP 71 Query: 89 SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 148 SPRQSD+MIVAGTLTNKMA ALR+VYDQM EP++V+SMGSCANGGGYYH+SYSVVRGCDR Sbjct: 72 SPRQSDLMIVAGTLTNKMAPALRKVYDQMTEPKWVLSMGSCANGGGYYHFSYSVVRGCDR 131 Query: 149 IVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 IVPVD+YVPGCPPTAEALIYG++ LQKKI+R K Sbjct: 132 IVPVDVYVPGCPPTAEALIYGLMQLQKKIKRTTGFK 167 >gi|83592891|ref|YP_426643.1| NADH dehydrogenase subunit B [Rhodospirillum rubrum ATCC 11170] gi|123526697|sp|Q2RU39|NUOB_RHORT RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|83575805|gb|ABC22356.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit [Rhodospirillum rubrum ATCC 11170] Length = 185 Score = 250 bits (639), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 118/159 (74%), Positives = 135/159 (84%) Query: 23 DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82 D +++ EI KGF++++VD LV WAR GSL MTFGLACCA+EM+ + RYDL+RF Sbjct: 23 DLILGQVAREIEEKGFVLSNVDSLVNWARAGSLWPMTFGLACCALEMIHCACARYDLDRF 82 Query: 83 GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142 G R SPRQSDVMIVAGTLTNKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSYSV Sbjct: 83 GTVFRPSPRQSDVMIVAGTLTNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYSV 142 Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181 VRGCDRIVPVDIYVPGCPPT+EAL+YG+L LQKKI+R G Sbjct: 143 VRGCDRIVPVDIYVPGCPPTSEALLYGVLQLQKKIKRTG 181 >gi|221108593|ref|XP_002170450.1| PREDICTED: similar to NADH-ubiquinone oxidoreductase Fe-S protein 7, partial [Hydra magnipapillata] Length = 198 Score = 250 bits (639), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 116/147 (78%), Positives = 128/147 (87%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 F+V VD LV WAR SL MTFGLACCAVEMM + PRYD++RFG RASPRQ+DVMI Sbjct: 47 FVVAKVDDLVNWARRSSLWPMTFGLACCAVEMMHFAAPRYDMDRFGVVFRASPRQADVMI 106 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGTLTNKMA ALRRVYDQMPEPR+VISMGSCANGGGYYHYSY+VVRGCDR+VPVDIYVP Sbjct: 107 VAGTLTNKMAPALRRVYDQMPEPRWVISMGSCANGGGYYHYSYAVVRGCDRVVPVDIYVP 166 Query: 158 GCPPTAEALIYGILLLQKKIRRVGNVK 184 GCPPTAEAL+YG+L LQKKI+R +K Sbjct: 167 GCPPTAEALLYGVLQLQKKIKRTREIK 193 >gi|220934163|ref|YP_002513062.1| NADH-quinone oxidoreductase, B subunit [Thioalkalivibrio sp. HL-EbGR7] gi|238065221|sp|B8GNY6|NUOB_THISH RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|219995473|gb|ACL72075.1| NADH-quinone oxidoreductase, B subunit [Thioalkalivibrio sp. HL-EbGR7] Length = 158 Score = 250 bits (639), Expect = 6e-65, Method: Compositional matrix adjust. Identities = 118/151 (78%), Positives = 128/151 (84%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 + KGF+ TS D+L+ WARTGSL MTFGLACCAVEMM A RYDL+RFG R SPRQ Sbjct: 6 VLEKGFVTTSADKLINWARTGSLWPMTFGLACCAVEMMHAGASRYDLDRFGVVFRPSPRQ 65 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 SDVMIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSY+VVRGCDRIVPV Sbjct: 66 SDVMIVAGTLVNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYAVVRGCDRIVPV 125 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 DIYVPGCPPTAEAL+YGIL LQ KIRR + Sbjct: 126 DIYVPGCPPTAEALLYGILQLQNKIRRTNTI 156 >gi|326934474|ref|XP_003213314.1| PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial-like, partial [Meleagris gallopavo] Length = 212 Score = 250 bits (639), Expect = 6e-65, Method: Compositional matrix adjust. Identities = 120/165 (72%), Positives = 136/165 (82%), Gaps = 1/165 (0%) Query: 21 KVDADFSRISSEITHKG-FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDL 79 K A + S T +G ++VT +D L+ WAR SL MTFGLACCAVEMM + PRYD+ Sbjct: 43 KSSAVLPKKSYVPTSRGEYIVTKLDDLINWARRSSLWPMTFGLACCAVEMMHMAAPRYDM 102 Query: 80 ERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS 139 +RFG RASPRQ+DVMIVAGTLTNKMA ALR+VYDQMPEPRYV+SMGSCANGGGYYHYS Sbjct: 103 DRFGVVFRASPRQADVMIVAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGYYHYS 162 Query: 140 YSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 YSVVRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQKKI+R ++ Sbjct: 163 YSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKIKREKKIQ 207 >gi|197128812|gb|ACH45310.1| putative NADH dehydrogenase Fe-S protein 7 >Feature gb|DQ213771 [Taeniopygia guttata] Length = 216 Score = 250 bits (639), Expect = 6e-65, Method: Compositional matrix adjust. Identities = 120/169 (71%), Positives = 138/169 (81%), Gaps = 1/169 (0%) Query: 12 SGQSSCSLEKVDADFSRISSEITHKG-FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMM 70 + SS ++K A R S + +G +++ +D LV WAR SL MTFGLACCAVEMM Sbjct: 38 AADSSVQVQKSSAVVPRKSYVPSSRGEYVIAKLDDLVNWARRSSLWPMTFGLACCAVEMM 97 Query: 71 QASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCA 130 + PRYD++RFG RASPRQ+DVMIVAGTLTNKMA ALR+VYDQMPEPRYV+SMGSCA Sbjct: 98 HMAAPRYDMDRFGVVFRASPRQADVMIVAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCA 157 Query: 131 NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179 NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQ+KI+R Sbjct: 158 NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQRKIKR 206 >gi|239947491|ref|ZP_04699244.1| NADH-quinone oxidoreductase subunit B [Rickettsia endosymbiont of Ixodes scapularis] gi|239921767|gb|EER21791.1| NADH-quinone oxidoreductase subunit B [Rickettsia endosymbiont of Ixodes scapularis] Length = 187 Score = 250 bits (638), Expect = 7e-65, Method: Compositional matrix adjust. Identities = 114/156 (73%), Positives = 135/156 (86%) Query: 29 ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88 ++ E++++GFL+T VD ++ WART SL MTFGLACCAVEMMQA+ RYD++RFG R Sbjct: 25 LNHELSNRGFLLTKVDDVIGWARTNSLWPMTFGLACCAVEMMQAAASRYDMDRFGMLFRP 84 Query: 89 SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 148 SPRQSD+MIVAGTLTNKMA ALR+VYDQM EP++V+SMGSCANGGGYYH+SYSVVRGCDR Sbjct: 85 SPRQSDLMIVAGTLTNKMAPALRKVYDQMAEPKWVLSMGSCANGGGYYHFSYSVVRGCDR 144 Query: 149 IVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 IVPVDIYVPGCPPTAE LIYG++ LQKKI+R K Sbjct: 145 IVPVDIYVPGCPPTAETLIYGLMQLQKKIKRTTGFK 180 >gi|157827450|ref|YP_001496514.1| NADH dehydrogenase subunit B [Rickettsia bellii OSU 85-389] gi|218528017|sp|A8GX77|NUOB_RICB8 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|157802754|gb|ABV79477.1| NADH dehydrogenase subunit B [Rickettsia bellii OSU 85-389] Length = 174 Score = 250 bits (638), Expect = 7e-65, Method: Compositional matrix adjust. Identities = 113/156 (72%), Positives = 137/156 (87%) Query: 29 ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88 +++E++++GFL+T VD ++ WAR+ SL MTFGLACCAVEMMQA+ RYD++RFG R Sbjct: 12 LNNELSNRGFLLTKVDDVIGWARSNSLWPMTFGLACCAVEMMQAAASRYDMDRFGMLFRP 71 Query: 89 SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 148 SPRQSD+MIVAGTLTNKMA ALR+VYDQM EP++V+SMGSCANGGGYYH+SYSVVRGCDR Sbjct: 72 SPRQSDLMIVAGTLTNKMAPALRKVYDQMAEPKWVLSMGSCANGGGYYHFSYSVVRGCDR 131 Query: 149 IVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 IVPVD+YVPGCPPTAEALIYG++ LQKKI+R K Sbjct: 132 IVPVDVYVPGCPPTAEALIYGLMQLQKKIKRTTGFK 167 >gi|255019908|ref|ZP_05291983.1| NADH-ubiquinone oxidoreductase chain B [Acidithiobacillus caldus ATCC 51756] gi|254970688|gb|EET28175.1| NADH-ubiquinone oxidoreductase chain B [Acidithiobacillus caldus ATCC 51756] Length = 158 Score = 250 bits (638), Expect = 7e-65, Method: Compositional matrix adjust. Identities = 115/151 (76%), Positives = 130/151 (86%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 + KGF+ TS+D +V W+RTGSL MTFGLACCAVEMM A RYDL+RFG R SPRQ Sbjct: 6 VLEKGFVTTSIDTVVNWSRTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGIIFRPSPRQ 65 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 SDVMIVAGTL NKMA ALR+VYDQMPEPR+V+SMGSCANGGGYYHYSYSVVRGCDRIVPV Sbjct: 66 SDVMIVAGTLVNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIVPV 125 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 D+YVPGCPPTAEAL++G++ LQKKIRR + Sbjct: 126 DVYVPGCPPTAEALLFGLIQLQKKIRRTNTI 156 >gi|126323645|ref|XP_001373250.1| PREDICTED: hypothetical protein [Monodelphis domestica] Length = 304 Score = 250 bits (638), Expect = 7e-65, Method: Compositional matrix adjust. Identities = 115/142 (80%), Positives = 127/142 (89%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 +++T +D L+ WAR SL MTFGLACCAVEMM + PRYD++RFG RASPRQSDVMI Sbjct: 153 YVITKLDDLINWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQSDVMI 212 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGTLTNKMA ALR+VYDQMPEPRYV+SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP Sbjct: 213 VAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 272 Query: 158 GCPPTAEALIYGILLLQKKIRR 179 GCPPTAEAL+YGIL LQKKI+R Sbjct: 273 GCPPTAEALLYGILQLQKKIKR 294 >gi|21312950|ref|NP_083548.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial precursor [Mus musculus] gi|47117311|sp|Q9DC70|NDUS7_MOUSE RecName: Full=NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial; AltName: Full=Complex I-20kD; Short=CI-20kD; AltName: Full=NADH-ubiquinone oxidoreductase 20 kDa subunit; Flags: Precursor gi|12833606|dbj|BAB22592.1| unnamed protein product [Mus musculus] gi|15488721|gb|AAH13503.1| NADH dehydrogenase (ubiquinone) Fe-S protein 7 [Mus musculus] gi|148699633|gb|EDL31580.1| NADH dehydrogenase (ubiquinone) Fe-S protein 7, isoform CRA_b [Mus musculus] Length = 224 Score = 250 bits (638), Expect = 8e-65, Method: Compositional matrix adjust. Identities = 115/147 (78%), Positives = 129/147 (87%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 ++VT +D L+ WAR SL MTFGLACCAVEMM + PRYD++RFG RASPRQ+DVMI Sbjct: 73 YVVTKLDDLINWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQADVMI 132 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGTLTNKMA ALR+VYDQMPEPRYV+SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP Sbjct: 133 VAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 192 Query: 158 GCPPTAEALIYGILLLQKKIRRVGNVK 184 GCPPTAEAL+YGIL LQ+KI+R +K Sbjct: 193 GCPPTAEALLYGILQLQRKIKREQKLK 219 >gi|299471504|emb|CBN79990.1| NUO10 homolog, NADH dehydrogenase (ubiquinone) subunit 10 [Ectocarpus siliculosus] Length = 225 Score = 250 bits (638), Expect = 8e-65, Method: Compositional matrix adjust. Identities = 116/141 (82%), Positives = 126/141 (89%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 F+V+ VD LV WAR GSL MTFGLACCAVEMM ++ RYDLERFG RASPRQSDVMI Sbjct: 74 FVVSKVDDLVNWARKGSLWPMTFGLACCAVEMMHSAASRYDLERFGMVFRASPRQSDVMI 133 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGTL NKMA ALR+VYDQMPEPR+V+SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP Sbjct: 134 VAGTLCNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 193 Query: 158 GCPPTAEALIYGILLLQKKIR 178 GCPPTAEAL+YG+L LQKKI+ Sbjct: 194 GCPPTAEALLYGLLQLQKKIK 214 >gi|56606108|ref|NP_001008525.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial [Rattus norvegicus] gi|55824717|gb|AAH86574.1| NADH dehydrogenase (ubiquinone) Fe-S protein 7 [Rattus norvegicus] gi|149034571|gb|EDL89308.1| NADH dehydrogenase (ubiquinone) Fe-S protein 7, isoform CRA_d [Rattus norvegicus] Length = 218 Score = 250 bits (638), Expect = 8e-65, Method: Compositional matrix adjust. Identities = 115/147 (78%), Positives = 129/147 (87%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 ++VT +D L+ WAR SL MTFGLACCAVEMM + PRYD++RFG RASPRQ+DVMI Sbjct: 67 YVVTKLDDLINWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQADVMI 126 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGTLTNKMA ALR+VYDQMPEPRYV+SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP Sbjct: 127 VAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 186 Query: 158 GCPPTAEALIYGILLLQKKIRRVGNVK 184 GCPPTAEAL+YGIL LQ+KI+R +K Sbjct: 187 GCPPTAEALLYGILQLQRKIKREQKLK 213 >gi|114321118|ref|YP_742801.1| NADH-quinone oxidoreductase, B subunit [Alkalilimnicola ehrlichii MLHE-1] gi|122311303|sp|Q0A776|NUOB_ALHEH RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|114227512|gb|ABI57311.1| NADH dehydrogenase subunit B [Alkalilimnicola ehrlichii MLHE-1] Length = 158 Score = 249 bits (637), Expect = 8e-65, Method: Compositional matrix adjust. Identities = 116/151 (76%), Positives = 130/151 (86%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 + KGF+ TS D+++ WARTGS+ MTFGLACCAVEMMQA RYDL+RFG R SPRQ Sbjct: 6 LLEKGFVTTSADKVINWARTGSMWPMTFGLACCAVEMMQAGAARYDLDRFGIIFRPSPRQ 65 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 SDVMIVAGTL NKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDR+VPV Sbjct: 66 SDVMIVAGTLCNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRVVPV 125 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 D+YVPGCPPTAEALI+GI+ LQKKIR + Sbjct: 126 DVYVPGCPPTAEALIWGIMQLQKKIRTTNTI 156 >gi|261856549|ref|YP_003263832.1| NADH-quinone oxidoreductase subunit beta [Halothiobacillus neapolitanus c2] gi|261837018|gb|ACX96785.1| NADH-quinone oxidoreductase, B subunit [Halothiobacillus neapolitanus c2] Length = 159 Score = 249 bits (637), Expect = 9e-65, Method: Compositional matrix adjust. Identities = 117/151 (77%), Positives = 128/151 (84%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 + KGF+ TS D+L+ WARTGSL MTFGLACCAVEMM A RYDL+RFG R SPRQ Sbjct: 6 VLEKGFVTTSADKLINWARTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGVVFRPSPRQ 65 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 SDVMIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSY+VVRGCDRIVPV Sbjct: 66 SDVMIVAGTLVNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYAVVRGCDRIVPV 125 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 DIYVPGCPPTAEAL+YGI+ LQ KIRR + Sbjct: 126 DIYVPGCPPTAEALLYGIIQLQNKIRRTNTI 156 >gi|67458958|ref|YP_246582.1| NADH dehydrogenase subunit B [Rickettsia felis URRWXCal2] gi|75536604|sp|Q4UM06|NUOB_RICFE RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|67004491|gb|AAY61417.1| NADH dehydrogenase I chain B [Rickettsia felis URRWXCal2] Length = 174 Score = 249 bits (637), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 113/156 (72%), Positives = 136/156 (87%) Query: 29 ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88 +++E++++GFL+T VD ++ WAR SL MTFGLACCAVEMMQA+ RYD++RFG R Sbjct: 12 LNNELSNRGFLLTKVDDVIGWARANSLWPMTFGLACCAVEMMQAAASRYDMDRFGMLFRP 71 Query: 89 SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 148 SPRQSD+MIVAGTLTNKMA ALR+VYDQM EP++V+SMGSCANGGGYYH+SYSVVRGCDR Sbjct: 72 SPRQSDLMIVAGTLTNKMAPALRKVYDQMAEPKWVLSMGSCANGGGYYHFSYSVVRGCDR 131 Query: 149 IVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 IVPVD+YVPGCPPTAEALIYG++ LQKKI+R K Sbjct: 132 IVPVDVYVPGCPPTAEALIYGLMQLQKKIKRTTGFK 167 >gi|225707068|gb|ACO09380.1| NADH dehydrogenase iron-sulfur protein 7, mitochondrial precursor [Osmerus mordax] Length = 220 Score = 249 bits (636), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 118/147 (80%), Positives = 129/147 (87%), Gaps = 1/147 (0%) Query: 34 THKG-FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 T KG +++T +D LV WAR SL MTFGLACCAVEMM + PRYD++RFG RASPRQ Sbjct: 64 TSKGEYVITKLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQ 123 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 SDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSY+VVRGCDRIVPV Sbjct: 124 SDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYAVVRGCDRIVPV 183 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179 DIYVPGCPPTAEAL+YG L LQKKI+R Sbjct: 184 DIYVPGCPPTAEALLYGTLQLQKKIKR 210 >gi|224007275|ref|XP_002292597.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|220971459|gb|EED89793.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 216 Score = 249 bits (636), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 116/141 (82%), Positives = 126/141 (89%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 + V+ VD LV WAR GSL MTFGLACCAVEMM A+ RYD+ERFG RASPRQSDVMI Sbjct: 65 YAVSRVDDLVNWARKGSLWPMTFGLACCAVEMMHAAASRYDMERFGMVFRASPRQSDVMI 124 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGTLTNKMA ALR+VYDQMPEPR+V+SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP Sbjct: 125 VAGTLTNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 184 Query: 158 GCPPTAEALIYGILLLQKKIR 178 GCPPTAEAL+YG+L LQKKI+ Sbjct: 185 GCPPTAEALLYGLLQLQKKIK 205 >gi|297275661|ref|XP_002808210.1| PREDICTED: LOW QUALITY PROTEIN: NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial-like [Macaca mulatta] Length = 362 Score = 249 bits (636), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 118/179 (65%), Positives = 139/179 (77%) Query: 6 VNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACC 65 V+Q + + S + + + + + ++V +D LV WAR SL MTFGLACC Sbjct: 179 VHQSVATDGPSSAQPALPKAGAMVPKPSSRGEYVVAKLDDLVNWARRSSLWPMTFGLACC 238 Query: 66 AVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVIS 125 AVEMM + PRYD++RFG RASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVIS Sbjct: 239 AVEMMHMAAPRYDMDRFGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVIS 298 Query: 126 MGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 MGSCANGGGYYHYSYSVVRGCDRIVPVDIY+PGCPPTAEAL+YG+L LQ+KI+R V+ Sbjct: 299 MGSCANGGGYYHYSYSVVRGCDRIVPVDIYIPGCPPTAEALLYGVLQLQRKIKRERKVQ 357 >gi|15604224|ref|NP_220740.1| NADH dehydrogenase subunit B [Rickettsia prowazekii str. Madrid E] gi|6647678|sp|Q9ZDH2|NUOB_RICPR RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|3860916|emb|CAA14816.1| NADH DEHYDROGENASE I CHAIN B (nuoB) [Rickettsia prowazekii] gi|292571965|gb|ADE29880.1| NADH dehydrogenase I chain B [Rickettsia prowazekii Rp22] Length = 174 Score = 249 bits (636), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 113/156 (72%), Positives = 137/156 (87%) Query: 29 ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88 ++S +T++GFL++ VD++++WAR SL MTFGLACCAVEMMQA+ RYD++RFG R Sbjct: 12 LNSGLTNRGFLLSKVDEVISWARANSLWPMTFGLACCAVEMMQAAASRYDMDRFGMLFRP 71 Query: 89 SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 148 SPRQSD+MIVAGTLTNKMA ALR+VYDQM EP++V+SMGSCANGGGYYH+SYSVVRGCDR Sbjct: 72 SPRQSDLMIVAGTLTNKMAPALRKVYDQMTEPKWVLSMGSCANGGGYYHFSYSVVRGCDR 131 Query: 149 IVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 IVPVD+YVPGCPPTAEALIYG++ LQKKI+R K Sbjct: 132 IVPVDVYVPGCPPTAEALIYGLMQLQKKIKRTTGFK 167 >gi|296420699|ref|XP_002839906.1| hypothetical protein [Tuber melanosporum Mel28] gi|295636113|emb|CAZ84097.1| unnamed protein product [Tuber melanosporum] Length = 213 Score = 249 bits (636), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 118/171 (69%), Positives = 141/171 (82%), Gaps = 3/171 (1%) Query: 11 ISGQSSCSLEKVDADFSRISSEITHKG---FLVTSVDQLVTWARTGSLMWMTFGLACCAV 67 ++ + S S+++ + + S++ KG +++TS+DQ+ WAR GSL MTFGLACCAV Sbjct: 32 LAPRDSSSIDRSNRREVLLPSQVPKKGVMQYVLTSLDQVANWARQGSLWPMTFGLACCAV 91 Query: 68 EMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMG 127 EMM S PRYD +R G RASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPR+V+SMG Sbjct: 92 EMMHLSTPRYDQDRLGIIFRASPRQSDVMIVAGTLTNKMAPALRQVYDQMPEPRWVVSMG 151 Query: 128 SCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 SCANGGGYYHYSYSVVRGCDRIVPVD+YVPGCPPT+EAL+YGIL LQKK+R Sbjct: 152 SCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTSEALMYGILQLQKKMR 202 >gi|196002435|ref|XP_002111085.1| predicted protein [Trichoplax adhaerens] gi|190587036|gb|EDV27089.1| predicted protein [Trichoplax adhaerens] Length = 164 Score = 249 bits (635), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 115/146 (78%), Positives = 128/146 (87%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 F+V VD ++ WAR SL MTFGLACCA+EMMQ + PRYD++RFG RASPRQ+DVMI Sbjct: 13 FVVAKVDDVINWARRSSLWPMTFGLACCAIEMMQFAAPRYDMDRFGIVFRASPRQADVMI 72 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGTLTNKMA A R+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRI+PVDIYVP Sbjct: 73 VAGTLTNKMAPAFRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVP 132 Query: 158 GCPPTAEALIYGILLLQKKIRRVGNV 183 GCPPTAEAL+YG LLLQKKIRR +V Sbjct: 133 GCPPTAEALLYGFLLLQKKIRRSKSV 158 >gi|167536644|ref|XP_001749993.1| hypothetical protein [Monosiga brevicollis MX1] gi|163771503|gb|EDQ85168.1| predicted protein [Monosiga brevicollis MX1] Length = 218 Score = 249 bits (635), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 114/154 (74%), Positives = 133/154 (86%), Gaps = 1/154 (0%) Query: 27 SRISSEITHKG-FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA 85 S+I + I ++ + + +D LV WAR GS+ MTFGLACCAVEMM + PRYD++RFG Sbjct: 55 SKIPANIDNRADYALAKLDDLVNWARKGSMWPMTFGLACCAVEMMHVAAPRYDMDRFGIV 114 Query: 86 PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRG 145 RASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPR+V+SMGSCANGGGYYHYSY+VVRG Sbjct: 115 FRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYAVVRG 174 Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179 CDRIVPVDIYVPGCPPT+EAL+YG+L LQKKI+R Sbjct: 175 CDRIVPVDIYVPGCPPTSEALLYGLLQLQKKIKR 208 >gi|47217431|emb|CAG00791.1| unnamed protein product [Tetraodon nigroviridis] Length = 219 Score = 249 bits (635), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 115/159 (72%), Positives = 136/159 (85%), Gaps = 1/159 (0%) Query: 27 SRISSEITHKG-FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA 85 ++ +S + KG +++T +D LV WAR SL MTFGLACCAVEMM + PRYD++RFG Sbjct: 56 AKPASVASSKGEYVITKLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVV 115 Query: 86 PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRG 145 RASPRQ+DVMIVAGTLTNKMA ALR+VY+QMPEPRYVISMGSCANGGGYYHYSY+VVRG Sbjct: 116 FRASPRQADVMIVAGTLTNKMAPALRKVYEQMPEPRYVISMGSCANGGGYYHYSYAVVRG 175 Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 CDRIVPVDIYVPGCPPTAEAL+YG+L LQ+KI+R ++ Sbjct: 176 CDRIVPVDIYVPGCPPTAEALLYGVLQLQRKIKREKKLR 214 >gi|194212381|ref|XP_001503839.2| PREDICTED: similar to PSST subunit of the NADH: ubiquinone oxidoreductase complex [Equus caballus] Length = 259 Score = 248 bits (634), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 119/163 (73%), Positives = 137/163 (84%), Gaps = 1/163 (0%) Query: 18 SLEKVDADFSRISSEITHKG-FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPR 76 ++ K A + ++ + +G ++VT +D LV WAR SL MTFGLACCAVEMM + PR Sbjct: 87 AMSKAGAVVPKPTALPSSRGEYVVTKLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPR 146 Query: 77 YDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY 136 YD++RFG RASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYV+SMGSCANGGGYY Sbjct: 147 YDMDRFGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGYY 206 Query: 137 HYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179 HYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQ+KI+R Sbjct: 207 HYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQRKIKR 249 >gi|84000019|ref|NP_001033111.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial precursor [Bos taurus] gi|1171865|sp|P42026|NDUS7_BOVIN RecName: Full=NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial; AltName: Full=Complex I-20kD; Short=CI-20kD; AltName: Full=NADH-ubiquinone oxidoreductase 20 kDa subunit; AltName: Full=PSST subunit; Flags: Precursor gi|599691|emb|CAA46154.1| PSST subunit of the NADH: ubiquinone oxidoreductase complex [Bos taurus] gi|83638667|gb|AAI09717.1| NADH dehydrogenase (ubiquinone) Fe-S protein 7, 20kDa (NADH-coenzyme Q reductase) [Bos taurus] gi|296485358|gb|DAA27473.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial precursor [Bos taurus] Length = 216 Score = 248 bits (634), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 115/142 (80%), Positives = 126/142 (88%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 ++V +D L+ WAR SL MTFGLACCAVEMM + PRYD++RFG RASPRQSDVMI Sbjct: 65 YVVAKLDDLINWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQSDVMI 124 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGTLTNKMA ALR+VYDQMPEPRYV+SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP Sbjct: 125 VAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 184 Query: 158 GCPPTAEALIYGILLLQKKIRR 179 GCPPTAEAL+YGIL LQKKI+R Sbjct: 185 GCPPTAEALLYGILQLQKKIKR 206 >gi|198284345|ref|YP_002220666.1| NADH dehydrogenase subunit B [Acidithiobacillus ferrooxidans ATCC 53993] gi|218666644|ref|YP_002427007.1| NADH-quinone oxidoreductase, B subunit [Acidithiobacillus ferrooxidans ATCC 23270] gi|218527968|sp|B5EN70|NUOB2_ACIF5 RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName: Full=NADH dehydrogenase I subunit B 2; AltName: Full=NDH-1 subunit B 2 gi|198248866|gb|ACH84459.1| NADH-quinone oxidoreductase, B subunit [Acidithiobacillus ferrooxidans ATCC 53993] gi|218518857|gb|ACK79443.1| NADH-quinone oxidoreductase, B subunit [Acidithiobacillus ferrooxidans ATCC 23270] Length = 158 Score = 248 bits (634), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 114/151 (75%), Positives = 129/151 (85%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 + KGF+ T++D +V W RTGSL MTFGLACCAVEMM A RYDL+RFG R SPRQ Sbjct: 6 LLEKGFVTTTIDTVVNWGRTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGIVFRPSPRQ 65 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 SDVMIVAGTL NKMA ALR+VYDQMPEPR+V+SMGSCANGGGYYHYSYS+VRGCDRIVPV Sbjct: 66 SDVMIVAGTLVNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSIVRGCDRIVPV 125 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 DIYVPGCPPTAEAL++G++ LQKKIRR + Sbjct: 126 DIYVPGCPPTAEALLFGLVQLQKKIRRTNTI 156 >gi|209964549|ref|YP_002297464.1| NADH-quinone oxidoreductase chain B [Rhodospirillum centenum SW] gi|238065202|sp|B6ISY0|NUOB_RHOCS RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|209958015|gb|ACI98651.1| NADH-quinone oxidoreductase chain B [Rhodospirillum centenum SW] Length = 194 Score = 248 bits (634), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 120/160 (75%), Positives = 132/160 (82%), Gaps = 1/160 (0%) Query: 23 DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82 DA + E+ KG+LV D L+ WARTGSL MTFGLACCAVEM+ A M RYDL+RF Sbjct: 31 DAYLQAVQQEMQDKGYLVARFDALMDWARTGSLWPMTFGLACCAVEMIHAYMARYDLDRF 90 Query: 83 GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142 G PR SPRQSDVMIVAGT+ NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSYSV Sbjct: 91 GVIPRPSPRQSDVMIVAGTVCNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYSV 150 Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182 VRG DRIVPVDIYVPGCPPTAEAL+YG+L LQKKI+ GN Sbjct: 151 VRGVDRIVPVDIYVPGCPPTAEALVYGVLQLQKKIKN-GN 189 >gi|269469169|gb|EEZ80711.1| NADH dehydrogenase I chain B [uncultured SUP05 cluster bacterium] Length = 159 Score = 248 bits (633), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 114/151 (75%), Positives = 131/151 (86%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 + + F+ TS+D+++ WARTGSL MTFGLACCAVEMM+A RYDL+RFG R +PRQ Sbjct: 6 LMKESFVTTSLDKVINWARTGSLWPMTFGLACCAVEMMEAGSSRYDLDRFGIVFRPTPRQ 65 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 SD+MIVAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSY+VVRGCDRIVPV Sbjct: 66 SDLMIVAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYAVVRGCDRIVPV 125 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 D+YVPGCPPTAEAL+YGIL LQ KIRR + Sbjct: 126 DVYVPGCPPTAEALLYGILQLQDKIRRTNTI 156 >gi|307206424|gb|EFN84462.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial [Harpegnathos saltator] Length = 224 Score = 248 bits (633), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 113/147 (76%), Positives = 129/147 (87%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 + + VD L+ W R GSL MTFGLACCAVEMM + PRYD++RFG RASPRQSD +I Sbjct: 73 YALARVDDLLNWGRKGSLWPMTFGLACCAVEMMHIAAPRYDMDRFGVVFRASPRQSDCII 132 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGTLTNKMASALR++YDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRI+PVDIYVP Sbjct: 133 VAGTLTNKMASALRKIYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVP 192 Query: 158 GCPPTAEALIYGILLLQKKIRRVGNVK 184 GCPPTAEAL+YG+L LQKKI+R+ NV+ Sbjct: 193 GCPPTAEALLYGVLQLQKKIKRMQNVQ 219 >gi|260800203|ref|XP_002595024.1| hypothetical protein BRAFLDRAFT_99644 [Branchiostoma floridae] gi|229280264|gb|EEN51035.1| hypothetical protein BRAFLDRAFT_99644 [Branchiostoma floridae] Length = 194 Score = 248 bits (633), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 116/142 (81%), Positives = 126/142 (88%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 F+V +D LV WAR SL MTFGLACCAVEMM + PRYD++RFG RASPRQ+DVMI Sbjct: 43 FVVARLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQADVMI 102 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGTLTNKMA ALR+VYDQMPEPRYV+SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP Sbjct: 103 VAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 162 Query: 158 GCPPTAEALIYGILLLQKKIRR 179 GCPPTAEAL+YGIL LQKKI+R Sbjct: 163 GCPPTAEALLYGILQLQKKIKR 184 >gi|198285499|gb|ACH85288.1| NADH-ubiquinone oxidoreductase Fe-S protein 7 [Salmo salar] Length = 215 Score = 248 bits (633), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 114/142 (80%), Positives = 126/142 (88%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 +++T +D LV WAR SL MTFGLACCAVEMM + PRYD++RFG RASPRQ+DVMI Sbjct: 64 YVITKLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQADVMI 123 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSY+VVRGCDRIVPVDIYVP Sbjct: 124 VAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYAVVRGCDRIVPVDIYVP 183 Query: 158 GCPPTAEALIYGILLLQKKIRR 179 GCPPTAEAL+YG L LQKKI+R Sbjct: 184 GCPPTAEALLYGTLQLQKKIKR 205 >gi|51473550|ref|YP_067307.1| NADH dehydrogenase subunit B [Rickettsia typhi str. Wilmington] gi|81390150|sp|Q68X17|NUOB_RICTY RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|51459862|gb|AAU03825.1| NADH dehydrogenase (ubiquinone) subunit B [Rickettsia typhi str. Wilmington] Length = 171 Score = 248 bits (633), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 112/156 (71%), Positives = 137/156 (87%) Query: 29 ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88 ++S +T++GFL++ +D++++WAR SL MTFGLACCAVEMMQA+ RYD++RFG R Sbjct: 12 LNSCLTNRGFLLSKIDEVISWARANSLWPMTFGLACCAVEMMQAAASRYDMDRFGMLFRP 71 Query: 89 SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 148 SPRQSD+MIVAGTLTNKMA ALR+VYDQM EP++V+SMGSCANGGGYYH+SYSVVRGCDR Sbjct: 72 SPRQSDLMIVAGTLTNKMAPALRKVYDQMTEPKWVLSMGSCANGGGYYHFSYSVVRGCDR 131 Query: 149 IVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 IVPVD+YVPGCPPTAEALIYG++ LQKKI+R K Sbjct: 132 IVPVDVYVPGCPPTAEALIYGLMQLQKKIKRTTGFK 167 >gi|73987562|ref|XP_533960.2| PREDICTED: similar to NADH-ubiquinone oxidoreductase Fe-S protein 7 [Canis familiaris] Length = 216 Score = 248 bits (633), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 114/147 (77%), Positives = 128/147 (87%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 ++V +D L+ WAR SL MTFGLACCAVEMM + PRYD++RFG RASPRQSDVMI Sbjct: 65 YVVAKLDDLINWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQSDVMI 124 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGTLTNKMA ALR+VYDQMPEPRYV+SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP Sbjct: 125 VAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 184 Query: 158 GCPPTAEALIYGILLLQKKIRRVGNVK 184 GCPPTAEAL+YGIL LQ+KI+R ++ Sbjct: 185 GCPPTAEALLYGILQLQRKIKREKKLR 211 >gi|157803902|ref|YP_001492451.1| NADH dehydrogenase subunit B [Rickettsia canadensis str. McKiel] gi|218528018|sp|A8EZ83|NUOB_RICCK RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|157785165|gb|ABV73666.1| NADH dehydrogenase beta subunit [Rickettsia canadensis str. McKiel] Length = 174 Score = 248 bits (633), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 112/156 (71%), Positives = 136/156 (87%) Query: 29 ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88 ++++++++GFL+T VD ++ WAR SL MTFGLACCAVEMMQA+ RYD++RFG R Sbjct: 12 LNNKLSNRGFLLTKVDDVIGWARANSLWPMTFGLACCAVEMMQAAASRYDMDRFGMLFRP 71 Query: 89 SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 148 SPRQSD+MIVAGTLTNKMA ALR+VYDQM EP++V+SMGSCANGGGYYH+SYSVVRGCDR Sbjct: 72 SPRQSDLMIVAGTLTNKMAPALRKVYDQMAEPKWVLSMGSCANGGGYYHFSYSVVRGCDR 131 Query: 149 IVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 IVPVDIY+PGCPPTAEALIYG++ LQKKI+R K Sbjct: 132 IVPVDIYIPGCPPTAEALIYGLMQLQKKIKRTTGFK 167 >gi|209730616|gb|ACI66177.1| NADH dehydrogenase iron-sulfur protein 7, mitochondrial precursor [Salmo salar] gi|209731354|gb|ACI66546.1| NADH dehydrogenase iron-sulfur protein 7, mitochondrial precursor [Salmo salar] gi|223646164|gb|ACN09840.1| NADH dehydrogenase iron-sulfur protein 7, mitochondrial precursor [Salmo salar] gi|223672011|gb|ACN12187.1| NADH dehydrogenase iron-sulfur protein 7, mitochondrial precursor [Salmo salar] gi|303660793|gb|ADM16006.1| NADH dehydrogenase iron-sulfur protein 7, mitochondrial precursor [Salmo salar] Length = 220 Score = 248 bits (632), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 114/142 (80%), Positives = 126/142 (88%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 +++T +D LV WAR SL MTFGLACCAVEMM + PRYD++RFG RASPRQ+DVMI Sbjct: 69 YVITKLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQADVMI 128 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSY+VVRGCDRIVPVDIYVP Sbjct: 129 VAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYAVVRGCDRIVPVDIYVP 188 Query: 158 GCPPTAEALIYGILLLQKKIRR 179 GCPPTAEAL+YG L LQKKI+R Sbjct: 189 GCPPTAEALLYGTLQLQKKIKR 210 >gi|319943349|ref|ZP_08017631.1| NADH-quinone oxidoreductase subunit B [Lautropia mirabilis ATCC 51599] gi|319743164|gb|EFV95569.1| NADH-quinone oxidoreductase subunit B [Lautropia mirabilis ATCC 51599] Length = 159 Score = 248 bits (632), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 115/151 (76%), Positives = 130/151 (86%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 + ++GF+ T+VD+L+ W RTGSL MTFGLACCAVEM+ A + RYDL+RFG R SPR Sbjct: 6 VLNEGFVTTNVDKLINWTRTGSLWAMTFGLACCAVEMIHAGVSRYDLDRFGVIFRPSPRH 65 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 SDVMIVAGTL NKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPV Sbjct: 66 SDVMIVAGTLCNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPV 125 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 DIYVPGCPPTAEALIYGI+ LQ+KIR + Sbjct: 126 DIYVPGCPPTAEALIYGIIQLQRKIRETNTI 156 >gi|229366862|gb|ACQ58411.1| NADH dehydrogenase iron-sulfur protein 7, mitochondrial precursor [Anoplopoma fimbria] Length = 219 Score = 248 bits (632), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 114/147 (77%), Positives = 127/147 (86%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 + +T +D L+ WAR SL MTFGLACCAVEMM + PRYD++RFG RASPRQ+DVMI Sbjct: 68 YAITKLDDLINWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQADVMI 127 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP Sbjct: 128 VAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 187 Query: 158 GCPPTAEALIYGILLLQKKIRRVGNVK 184 GCPPTAEAL+YG L LQKKI+R ++ Sbjct: 188 GCPPTAEALLYGTLQLQKKIKREKKLR 214 >gi|254491467|ref|ZP_05104646.1| NADH-quinone oxidoreductase, B subunit subfamily [Methylophaga thiooxidans DMS010] gi|224462945|gb|EEF79215.1| NADH-quinone oxidoreductase, B subunit subfamily [Methylophaga thiooxydans DMS010] Length = 162 Score = 248 bits (632), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 117/151 (77%), Positives = 128/151 (84%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 + KG + TS D+L+ WARTGSL MTFGLACCAVEMM A RYDL+RFG R SPRQ Sbjct: 6 VLEKGVVTTSADKLINWARTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGVVFRPSPRQ 65 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 SDVMIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPV Sbjct: 66 SDVMIVAGTLVNKMAPALRKVYDQMSEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPV 125 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 DIYVPGCPPTAEAL+YGI+ LQKKI+R + Sbjct: 126 DIYVPGCPPTAEALLYGIVQLQKKIQRTNTI 156 >gi|198431614|ref|XP_002130919.1| PREDICTED: similar to NADH-ubiquinone oxidoreductase Fe-S protein 7 [Ciona intestinalis] Length = 236 Score = 247 bits (631), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 115/171 (67%), Positives = 139/171 (81%) Query: 9 KIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVE 68 K I + + L+ + ++ SR+ + + ++ T +D LV + RT SL MTFGLACCAVE Sbjct: 37 KKIETEPAQVLQPIRSEISRLKNADSRGEYIATRIDDLVNYVRTNSLWPMTFGLACCAVE 96 Query: 69 MMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGS 128 MM + PRYD++RFG RASPRQSD+MIVAGTLTNKMA ALRRVYDQM +P++V+SMGS Sbjct: 97 MMHFAAPRYDMDRFGVVFRASPRQSDLMIVAGTLTNKMAPALRRVYDQMADPKWVLSMGS 156 Query: 129 CANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179 CANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG+L LQKK+RR Sbjct: 157 CANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGVLQLQKKVRR 207 >gi|158455101|gb|AAI53838.1| NDUFS7 protein [Bos taurus] Length = 179 Score = 247 bits (631), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 115/147 (78%), Positives = 128/147 (87%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 ++V +D L+ WAR SL MTFGLACCAVEMM + PRYD++RFG RASPRQSDVMI Sbjct: 28 YVVAKLDDLINWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQSDVMI 87 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGTLTNKMA ALR+VYDQMPEPRYV+SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP Sbjct: 88 VAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 147 Query: 158 GCPPTAEALIYGILLLQKKIRRVGNVK 184 GCPPTAEAL+YGIL LQKKI+R ++ Sbjct: 148 GCPPTAEALLYGILQLQKKIKREKRLR 174 >gi|88608136|ref|YP_506317.1| NADH dehydrogenase I, B subunit [Neorickettsia sennetsu str. Miyayama] gi|123491986|sp|Q2GDX9|NUOB_NEOSM RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|88600305|gb|ABD45773.1| NADH dehydrogenase I, B subunit [Neorickettsia sennetsu str. Miyayama] Length = 167 Score = 247 bits (631), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 116/152 (76%), Positives = 129/152 (84%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP 90 S ++ G+LV +D L+ WAR+GSL MTFGLACCAVEMM + RYD++RFG R SP Sbjct: 12 SNVSSDGYLVAKLDDLINWARSGSLWPMTFGLACCAVEMMHFTASRYDMDRFGMIFRPSP 71 Query: 91 RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150 RQSDVMIVAGTLTNKMA ALRRVYDQM EP+YVISMGSCANGGGYYHYSYSVVRGCDRIV Sbjct: 72 RQSDVMIVAGTLTNKMAPALRRVYDQMAEPKYVISMGSCANGGGYYHYSYSVVRGCDRIV 131 Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182 PVD+YVPGCPPTAEAL+YG+L LQKKI R N Sbjct: 132 PVDVYVPGCPPTAEALLYGVLCLQKKINRQRN 163 >gi|52842986|ref|YP_096785.1| NADH dehydrogenase subunit B [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|54295617|ref|YP_128032.1| NADH dehydrogenase subunit B [Legionella pneumophila str. Lens] gi|54298771|ref|YP_125140.1| NADH dehydrogenase subunit B [Legionella pneumophila str. Paris] gi|296108431|ref|YP_003620132.1| NADH dehydrogenase I chain B [Legionella pneumophila 2300/99 Alcoy] gi|81376641|sp|Q5ZRT9|NUOB_LEGPH RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|81601171|sp|Q5WT21|NUOB_LEGPL RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|81601638|sp|Q5X1A8|NUOB_LEGPA RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|52630097|gb|AAU28838.1| NADH dehydrogenase I, B subunit [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|53752556|emb|CAH13988.1| NADH dehydrogenase I chain B [Legionella pneumophila str. Paris] gi|53755449|emb|CAH16945.1| NADH dehydrogenase I chain B [Legionella pneumophila str. Lens] gi|295650333|gb|ADG26180.1| NADH dehydrogenase I chain B [Legionella pneumophila 2300/99 Alcoy] Length = 158 Score = 247 bits (631), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 116/149 (77%), Positives = 130/149 (87%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP 90 +E+ KGF +T+V++LV WAR+GS+ MTFGLACCAVEMM RYDL+RFG R SP Sbjct: 4 AELEKKGFELTTVEKLVGWARSGSMWPMTFGLACCAVEMMHVGAARYDLDRFGIIFRPSP 63 Query: 91 RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150 RQSDVMIVAGTL NKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRIV Sbjct: 64 RQSDVMIVAGTLCNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIV 123 Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRR 179 PVD+YVPGCPPTAEAL+YGI+ LQ KIRR Sbjct: 124 PVDVYVPGCPPTAEALLYGIIQLQNKIRR 152 >gi|301776330|ref|XP_002923562.1| PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial-like [Ailuropoda melanoleuca] Length = 240 Score = 247 bits (630), Expect = 6e-64, Method: Compositional matrix adjust. Identities = 114/142 (80%), Positives = 126/142 (88%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 ++V +D L+ WAR SL MTFGLACCAVEMM + PRYD++RFG RASPRQSDVMI Sbjct: 89 YVVAKLDDLINWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQSDVMI 148 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGTLTNKMA ALR+VYDQMPEPRYV+SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP Sbjct: 149 VAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 208 Query: 158 GCPPTAEALIYGILLLQKKIRR 179 GCPPTAEAL+YGIL LQ+KI+R Sbjct: 209 GCPPTAEALLYGILQLQRKIKR 230 >gi|91205212|ref|YP_537567.1| NADH dehydrogenase subunit B [Rickettsia bellii RML369-C] gi|122425872|sp|Q1RJI6|NUOB_RICBR RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|91068756|gb|ABE04478.1| NADH dehydrogenase I chain B [Rickettsia bellii RML369-C] Length = 174 Score = 247 bits (630), Expect = 6e-64, Method: Compositional matrix adjust. Identities = 112/156 (71%), Positives = 136/156 (87%) Query: 29 ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88 +++E++++G L+T VD ++ WAR+ SL MTFGLACCAVEMMQA+ RYD++RFG R Sbjct: 12 LNNELSNRGVLLTKVDDVIGWARSNSLWPMTFGLACCAVEMMQAAASRYDMDRFGMLFRP 71 Query: 89 SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 148 SPRQSD+MIVAGTLTNKMA ALR+VYDQM EP++V+SMGSCANGGGYYH+SYSVVRGCDR Sbjct: 72 SPRQSDLMIVAGTLTNKMAPALRKVYDQMAEPKWVLSMGSCANGGGYYHFSYSVVRGCDR 131 Query: 149 IVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 IVPVD+YVPGCPPTAEALIYG++ LQKKI+R K Sbjct: 132 IVPVDVYVPGCPPTAEALIYGLMQLQKKIKRTTGFK 167 >gi|119589914|gb|EAW69508.1| NADH dehydrogenase (ubiquinone) Fe-S protein 7, 20kDa (NADH-coenzyme Q reductase), isoform CRA_b [Homo sapiens] Length = 224 Score = 247 bits (630), Expect = 6e-64, Method: Compositional matrix adjust. Identities = 114/142 (80%), Positives = 126/142 (88%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 ++V +D LV WAR SL MTFGLACCAVEMM + PRYD++RFG RASPRQSDVMI Sbjct: 73 YVVAKLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQSDVMI 132 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGTLTNKMA ALR+VYDQMPEPRYV+SMGSCANGGGYYHYSYSVVRGCDRIVPVDIY+P Sbjct: 133 VAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYIP 192 Query: 158 GCPPTAEALIYGILLLQKKIRR 179 GCPPTAEAL+YGIL LQ+KI+R Sbjct: 193 GCPPTAEALLYGILQLQRKIKR 214 >gi|319787442|ref|YP_004146917.1| NADH-quinone oxidoreductase subunit beta [Pseudoxanthomonas suwonensis 11-1] gi|317465954|gb|ADV27686.1| NADH-quinone oxidoreductase, B subunit [Pseudoxanthomonas suwonensis 11-1] Length = 192 Score = 247 bits (630), Expect = 7e-64, Method: Compositional matrix adjust. Identities = 120/161 (74%), Positives = 132/161 (81%), Gaps = 2/161 (1%) Query: 25 DFSRISSE--ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82 D R + E + KG++ TSVD LV WARTGS+ MTFGLACCAVEMM A R DL+R+ Sbjct: 22 DILRPAGENPLLEKGYVTTSVDALVNWARTGSMWPMTFGLACCAVEMMHAGAARLDLDRY 81 Query: 83 GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142 G R SPRQSDVMIVAGTL NKMA ALR+VYDQMP+P++VISMGSCANGGGYYHYSYSV Sbjct: 82 GVVFRPSPRQSDVMIVAGTLVNKMAPALRKVYDQMPDPKWVISMGSCANGGGYYHYSYSV 141 Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 VRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQKKI R V Sbjct: 142 VRGCDRIVPVDIYVPGCPPTAEALVYGILQLQKKIWRTQTV 182 >gi|270158113|ref|ZP_06186770.1| NADH-quinone oxidoreductase B subunit [Legionella longbeachae D-4968] gi|289163622|ref|YP_003453760.1| NADH dehydrogenase I chain B [Legionella longbeachae NSW150] gi|269990138|gb|EEZ96392.1| NADH-quinone oxidoreductase B subunit [Legionella longbeachae D-4968] gi|288856795|emb|CBJ10606.1| NADH dehydrogenase I chain B [Legionella longbeachae NSW150] Length = 158 Score = 247 bits (630), Expect = 7e-64, Method: Compositional matrix adjust. Identities = 115/149 (77%), Positives = 129/149 (86%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP 90 +E+ GF+ TSV++LV WAR+GS+ MTFGLACCAVEMM A RYDL+RFG R SP Sbjct: 4 AELQKSGFVTTSVEKLVGWARSGSMWPMTFGLACCAVEMMHAGAARYDLDRFGIIFRPSP 63 Query: 91 RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150 RQSDVMIVAGTL NKMA ALR+VYDQMPEPR+V+SMGSCANGGGYYHYSYSVVRGCDRIV Sbjct: 64 RQSDVMIVAGTLCNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIV 123 Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRR 179 PVD+YVPGCPPTAEAL+YGI+ LQ KIR Sbjct: 124 PVDVYVPGCPPTAEALLYGIIQLQNKIRH 152 >gi|159031992|ref|NP_001103713.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial precursor [Pan troglodytes] gi|115502489|sp|Q0MQI0|NDUS7_PANTR RecName: Full=NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial; AltName: Full=Complex I-20kD; Short=CI-20kD; AltName: Full=NADH-ubiquinone oxidoreductase 20 kDa subunit; Flags: Precursor gi|111661826|gb|ABH12163.1| mitochondrial complex I subunit NDUFS7 [Pan troglodytes] Length = 213 Score = 246 bits (629), Expect = 7e-64, Method: Compositional matrix adjust. Identities = 114/142 (80%), Positives = 126/142 (88%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 ++V +D LV WAR SL MTFGLACCAVEMM + PRYD++RFG RASPRQSDVMI Sbjct: 62 YVVAKLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQSDVMI 121 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGTLTNKMA ALR+VYDQMPEPRYV+SMGSCANGGGYYHYSYSVVRGCDRIVPVDIY+P Sbjct: 122 VAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYIP 181 Query: 158 GCPPTAEALIYGILLLQKKIRR 179 GCPPTAEAL+YGIL LQ+KI+R Sbjct: 182 GCPPTAEALLYGILQLQRKIKR 203 >gi|187929292|ref|YP_001899779.1| NADH dehydrogenase subunit B [Ralstonia pickettii 12J] gi|241663483|ref|YP_002981843.1| NADH dehydrogenase subunit B [Ralstonia pickettii 12D] gi|309781853|ref|ZP_07676586.1| NADH dehydrogenase (ubiquinone), B subunit [Ralstonia sp. 5_7_47FAA] gi|218528007|sp|B2U7R0|NUOB_RALPJ RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|187726182|gb|ACD27347.1| NADH-quinone oxidoreductase, B subunit [Ralstonia pickettii 12J] gi|240865510|gb|ACS63171.1| NADH-quinone oxidoreductase, B subunit [Ralstonia pickettii 12D] gi|308919494|gb|EFP65158.1| NADH dehydrogenase (ubiquinone), B subunit [Ralstonia sp. 5_7_47FAA] Length = 160 Score = 246 bits (629), Expect = 8e-64, Method: Compositional matrix adjust. Identities = 115/151 (76%), Positives = 128/151 (84%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 + ++GF+ T+ D+L+ W RTGSL MTFGLACCAVEMM A RYDL+RFG R SPRQ Sbjct: 6 VLNEGFVTTTADKLINWTRTGSLWPMTFGLACCAVEMMHAGASRYDLDRFGVVFRPSPRQ 65 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 SDVMIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPV Sbjct: 66 SDVMIVAGTLCNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPV 125 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 D+YVPGCPPTAEALIYGI+ LQ KIRR + Sbjct: 126 DVYVPGCPPTAEALIYGIIQLQAKIRRTNTI 156 >gi|82702221|ref|YP_411787.1| NADH dehydrogenase subunit B [Nitrosospira multiformis ATCC 25196] gi|123544732|sp|Q2YA26|NUOB2_NITMU RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName: Full=NADH dehydrogenase I subunit B 2; AltName: Full=NDH-1 subunit B 2 gi|82410286|gb|ABB74395.1| NADH dehydrogenase subunit B [Nitrosospira multiformis ATCC 25196] Length = 158 Score = 246 bits (629), Expect = 8e-64, Method: Compositional matrix adjust. Identities = 115/154 (74%), Positives = 129/154 (83%) Query: 30 SSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS 89 ++ + KGF+ TS+D ++ W RTGS+ MTFGLACCAVEMMQA RYDL+RFG R S Sbjct: 3 TNGVMEKGFVTTSLDSVINWGRTGSMWPMTFGLACCAVEMMQAGASRYDLDRFGIVFRPS 62 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQSDVMIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRI Sbjct: 63 PRQSDVMIVAGTLCNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRI 122 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 VPVDIYVPGCPPTAEAL+YGI+ LQ KI R + Sbjct: 123 VPVDIYVPGCPPTAEALLYGIIQLQNKIHRTNTI 156 >gi|256821516|ref|YP_003145479.1| NADH-quinone oxidoreductase subunit B [Kangiella koreensis DSM 16069] gi|256795055|gb|ACV25711.1| NADH-quinone oxidoreductase, B subunit [Kangiella koreensis DSM 16069] Length = 186 Score = 246 bits (629), Expect = 8e-64, Method: Compositional matrix adjust. Identities = 114/151 (75%), Positives = 128/151 (84%) Query: 29 ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88 + ++ GF+ TS+ L WARTGS+ +TFGLACCA+EMM A RYD++RFG R Sbjct: 3 LEQQLQGDGFVTTSIKDLFDWARTGSMWPVTFGLACCAIEMMHAGAARYDMDRFGVIFRP 62 Query: 89 SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 148 SPRQSDVMIVAGTLTNKMA ALRRVYDQMPEP++VISMGSCANGGGYYHYSYSVVRGCDR Sbjct: 63 SPRQSDVMIVAGTLTNKMAPALRRVYDQMPEPKWVISMGSCANGGGYYHYSYSVVRGCDR 122 Query: 149 IVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179 IVPVDIYVPGCPPTAEAL+YGI+ LQ KIRR Sbjct: 123 IVPVDIYVPGCPPTAEALLYGIIQLQNKIRR 153 >gi|13543603|gb|AAH05954.1| NADH dehydrogenase (ubiquinone) Fe-S protein 7, 20kDa (NADH-coenzyme Q reductase) [Homo sapiens] gi|84105526|gb|AAI11518.1| NDUFS7 protein [Homo sapiens] gi|325464357|gb|ADZ15949.1| NADH dehydrogenase (ubiquinone) Fe-S protein 7, 20kDa (NADH-coenzyme Q reductase) [synthetic construct] Length = 213 Score = 246 bits (629), Expect = 9e-64, Method: Compositional matrix adjust. Identities = 114/142 (80%), Positives = 126/142 (88%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 ++V +D LV WAR SL MTFGLACCAVEMM + PRYD++RFG RASPRQSDVMI Sbjct: 62 YVVAKLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQSDVMI 121 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGTLTNKMA ALR+VYDQMPEPRYV+SMGSCANGGGYYHYSYSVVRGCDRIVPVDIY+P Sbjct: 122 VAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYIP 181 Query: 158 GCPPTAEALIYGILLLQKKIRR 179 GCPPTAEAL+YGIL LQ+KI+R Sbjct: 182 GCPPTAEALLYGILQLQRKIKR 203 >gi|115502488|sp|Q0MQH9|NDUS7_GORGO RecName: Full=NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial; AltName: Full=Complex I-20kD; Short=CI-20kD; AltName: Full=NADH-ubiquinone oxidoreductase 20 kDa subunit; Flags: Precursor gi|269969394|sp|P0CB84|NDUS7_PONPY RecName: Full=NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial; AltName: Full=Complex I-20kD; Short=CI-20kD; AltName: Full=NADH-ubiquinone oxidoreductase 20 kDa subunit; Flags: Precursor gi|111661828|gb|ABH12164.1| mitochondrial complex I subunit NDUFS7 [Gorilla gorilla] gi|111661830|gb|ABH12165.1| mitochondrial complex I subunit NDUFS7 [Pongo pygmaeus] Length = 213 Score = 246 bits (628), Expect = 9e-64, Method: Compositional matrix adjust. Identities = 114/142 (80%), Positives = 126/142 (88%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 ++V +D LV WAR SL MTFGLACCAVEMM + PRYD++RFG RASPRQSDVMI Sbjct: 62 YVVAKLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQSDVMI 121 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGTLTNKMA ALR+VYDQMPEPRYV+SMGSCANGGGYYHYSYSVVRGCDRIVPVDIY+P Sbjct: 122 VAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYIP 181 Query: 158 GCPPTAEALIYGILLLQKKIRR 179 GCPPTAEAL+YGIL LQ+KI+R Sbjct: 182 GCPPTAEALLYGILQLQRKIKR 203 >gi|187281616|ref|NP_077718.3| NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial precursor [Homo sapiens] gi|90110040|sp|O75251|NDUS7_HUMAN RecName: Full=NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial; AltName: Full=Complex I-20kD; Short=CI-20kD; AltName: Full=NADH-ubiquinone oxidoreductase 20 kDa subunit; AltName: Full=PSST subunit; Flags: Precursor gi|33150724|gb|AAP97240.1|AF115969_1 NADH:ubiquinone oxidoreductase PSST subunit [Homo sapiens] gi|62897035|dbj|BAD96458.1| NADH-ubiquinone oxidoreductase Fe-S protein 7 variant [Homo sapiens] Length = 213 Score = 246 bits (628), Expect = 9e-64, Method: Compositional matrix adjust. Identities = 114/142 (80%), Positives = 126/142 (88%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 ++V +D LV WAR SL MTFGLACCAVEMM + PRYD++RFG RASPRQSDVMI Sbjct: 62 YVVAKLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQSDVMI 121 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGTLTNKMA ALR+VYDQMPEPRYV+SMGSCANGGGYYHYSYSVVRGCDRIVPVDIY+P Sbjct: 122 VAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYIP 181 Query: 158 GCPPTAEALIYGILLLQKKIRR 179 GCPPTAEAL+YGIL LQ+KI+R Sbjct: 182 GCPPTAEALLYGILQLQRKIKR 203 >gi|17546780|ref|NP_520182.1| NADH dehydrogenase subunit B [Ralstonia solanacearum GMI1000] gi|83746298|ref|ZP_00943351.1| NADH-quinone oxidoreductase chain B [Ralstonia solanacearum UW551] gi|207723874|ref|YP_002254272.1| nadh dehydrogenaseI(chain b) protein [Ralstonia solanacearum MolK2] gi|207742736|ref|YP_002259128.1| nadh dehydrogenaseI(chain b) protein [Ralstonia solanacearum IPO1609] gi|81504305|sp|Q8XXQ2|NUOB_RALSO RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|17429080|emb|CAD15768.1| probable nadh dehydrogenaseI(chain b) oxidoreductase protein [Ralstonia solanacearum GMI1000] gi|83727048|gb|EAP74173.1| NADH-quinone oxidoreductase chain B [Ralstonia solanacearum UW551] gi|206589079|emb|CAQ36041.1| nadh dehydrogenaseI(chain b) protein [Ralstonia solanacearum MolK2] gi|206594130|emb|CAQ61057.1| nadh dehydrogenaseI(chain b) protein [Ralstonia solanacearum IPO1609] gi|299066334|emb|CBJ37518.1| NADH-quinone oxidoreductase subunit B [Ralstonia solanacearum CMR15] Length = 160 Score = 246 bits (628), Expect = 9e-64, Method: Compositional matrix adjust. Identities = 115/151 (76%), Positives = 128/151 (84%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 + ++GF+ T+ D+L+ W RTGSL MTFGLACCAVEMM A RYDL+RFG R SPRQ Sbjct: 6 VLNEGFVTTTADKLINWTRTGSLWPMTFGLACCAVEMMHAGASRYDLDRFGVVFRPSPRQ 65 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 SDVMIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPV Sbjct: 66 SDVMIVAGTLCNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPV 125 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 D+YVPGCPPTAEALIYGI+ LQ KIRR + Sbjct: 126 DVYVPGCPPTAEALIYGIIQLQAKIRRTNTI 156 >gi|119589913|gb|EAW69507.1| NADH dehydrogenase (ubiquinone) Fe-S protein 7, 20kDa (NADH-coenzyme Q reductase), isoform CRA_a [Homo sapiens] Length = 298 Score = 246 bits (628), Expect = 9e-64, Method: Compositional matrix adjust. Identities = 114/142 (80%), Positives = 126/142 (88%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 ++V +D LV WAR SL MTFGLACCAVEMM + PRYD++RFG RASPRQSDVMI Sbjct: 147 YVVAKLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQSDVMI 206 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGTLTNKMA ALR+VYDQMPEPRYV+SMGSCANGGGYYHYSYSVVRGCDRIVPVDIY+P Sbjct: 207 VAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYIP 266 Query: 158 GCPPTAEALIYGILLLQKKIRR 179 GCPPTAEAL+YGIL LQ+KI+R Sbjct: 267 GCPPTAEALLYGILQLQRKIKR 288 >gi|11466535|ref|NP_044784.1| NADH dehydrogenase subunit 10 [Reclinomonas americana] gi|6647649|sp|O21272|NDUS7_RECAM RecName: Full=NADH-ubiquinone oxidoreductase 20 kDa subunit; AltName: Full=NADH dehydrogenase subunit 10 gi|2258365|gb|AAD11899.1| NADH dehydrogenase subunit 10 [Reclinomonas americana] Length = 182 Score = 246 bits (628), Expect = 9e-64, Method: Compositional matrix adjust. Identities = 115/154 (74%), Positives = 132/154 (85%) Query: 26 FSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA 85 F ++++ F+V+ +D+LV WAR GSL MTFGLACCAVEMM ++ RYDL+RFG Sbjct: 19 FMILNNKQNKTEFIVSKMDELVNWARKGSLWPMTFGLACCAVEMMHSAASRYDLDRFGII 78 Query: 86 PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRG 145 R SPRQSDVMIVAGTLTNKMA ALR+VYDQM EPR+V+SMGSCANGGGYYHYSYSVVRG Sbjct: 79 FRPSPRQSDVMIVAGTLTNKMAPALRKVYDQMSEPRWVVSMGSCANGGGYYHYSYSVVRG 138 Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179 CDRIVPVDIYVPGCPPTAEAL+YG+L LQKKI+R Sbjct: 139 CDRIVPVDIYVPGCPPTAEALLYGLLQLQKKIKR 172 >gi|197097452|ref|NP_001126953.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial precursor [Pongo abelii] gi|269969393|sp|P0CB83|NDUS7_PONAB RecName: Full=NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial; AltName: Full=Complex I-20kD; Short=CI-20kD; AltName: Full=NADH-ubiquinone oxidoreductase 20 kDa subunit; Flags: Precursor gi|55733271|emb|CAH93318.1| hypothetical protein [Pongo abelii] Length = 213 Score = 246 bits (628), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 113/142 (79%), Positives = 126/142 (88%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 ++V +D L+ WAR SL MTFGLACCAVEMM + PRYD++RFG RASPRQSDVMI Sbjct: 62 YVVAKLDDLINWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQSDVMI 121 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGTLTNKMA ALR+VYDQMPEPRYV+SMGSCANGGGYYHYSYSVVRGCDRIVPVDIY+P Sbjct: 122 VAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYIP 181 Query: 158 GCPPTAEALIYGILLLQKKIRR 179 GCPPTAEAL+YGIL LQ+KI+R Sbjct: 182 GCPPTAEALLYGILQLQRKIKR 203 >gi|34189943|gb|AAH01715.2| NDUFS7 protein [Homo sapiens] Length = 208 Score = 246 bits (628), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 114/142 (80%), Positives = 126/142 (88%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 ++V +D LV WAR SL MTFGLACCAVEMM + PRYD++RFG RASPRQSDVMI Sbjct: 57 YVVAKLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQSDVMI 116 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGTLTNKMA ALR+VYDQMPEPRYV+SMGSCANGGGYYHYSYSVVRGCDRIVPVDIY+P Sbjct: 117 VAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYIP 176 Query: 158 GCPPTAEALIYGILLLQKKIRR 179 GCPPTAEAL+YGIL LQ+KI+R Sbjct: 177 GCPPTAEALLYGILQLQRKIKR 198 >gi|254796791|ref|YP_003081628.1| NADH-quinone oxidoreductase chain b [Neorickettsia risticii str. Illinois] gi|254590025|gb|ACT69387.1| NADH-quinone oxidoreductase chain b [Neorickettsia risticii str. Illinois] Length = 167 Score = 246 bits (628), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 119/159 (74%), Positives = 131/159 (82%), Gaps = 2/159 (1%) Query: 26 FSRIS--SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFG 83 FS I+ S + G+LV +D L+ WAR GSL MTFGLACCAVEMM + RYD++RFG Sbjct: 5 FSDINALSNVGSDGYLVAKLDDLINWARAGSLWPMTFGLACCAVEMMHFTASRYDMDRFG 64 Query: 84 FAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVV 143 R SPRQSDVMIVAGTLTNKMA ALRRVYDQM EP+YVISMGSCANGGGYYHYSYSVV Sbjct: 65 MIFRPSPRQSDVMIVAGTLTNKMAPALRRVYDQMAEPKYVISMGSCANGGGYYHYSYSVV 124 Query: 144 RGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182 RGCDRIVPVD+YVPGCPPTAEAL+YG+L LQKKI R N Sbjct: 125 RGCDRIVPVDVYVPGCPPTAEALLYGVLCLQKKINRQRN 163 >gi|300691026|ref|YP_003752021.1| NADH-quinone oxidoreductase subunit B [Ralstonia solanacearum PSI07] gi|299078086|emb|CBJ50729.1| NADH-quinone oxidoreductase subunit B [Ralstonia solanacearum PSI07] Length = 160 Score = 246 bits (628), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 115/151 (76%), Positives = 128/151 (84%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 + ++GF+ T+ D+L+ W RTGSL MTFGLACCAVEMM A RYDL+RFG R SPRQ Sbjct: 6 VLNEGFVTTTADKLINWTRTGSLWPMTFGLACCAVEMMHAGASRYDLDRFGVVFRPSPRQ 65 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 SDVMIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPV Sbjct: 66 SDVMIVAGTLCNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPV 125 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 D+YVPGCPPTAEALIYGI+ LQ KIRR + Sbjct: 126 DVYVPGCPPTAEALIYGIIQLQAKIRRTNTI 156 >gi|292493667|ref|YP_003529106.1| NADH-quinone oxidoreductase subunit beta [Nitrosococcus halophilus Nc4] gi|291582262|gb|ADE16719.1| NADH-quinone oxidoreductase, B subunit [Nitrosococcus halophilus Nc4] Length = 158 Score = 246 bits (628), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 116/147 (78%), Positives = 127/147 (86%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 + +G + T+ D+L+ WARTGSL MTFGLACCAVEMM A RYDL+RFG R SPRQ Sbjct: 6 VLERGVVTTTADKLINWARTGSLWPMTFGLACCAVEMMHAGASRYDLDRFGVVFRPSPRQ 65 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 SDVMIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPV Sbjct: 66 SDVMIVAGTLVNKMAPALRKVYDQMSEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPV 125 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179 DIYVPGCPPTAEAL+YGI+ LQKKIRR Sbjct: 126 DIYVPGCPPTAEALLYGIIQLQKKIRR 152 >gi|254247658|ref|ZP_04940979.1| NADH dehydrogenase beta subunit [Burkholderia cenocepacia PC184] gi|124872434|gb|EAY64150.1| NADH dehydrogenase beta subunit [Burkholderia cenocepacia PC184] Length = 173 Score = 246 bits (628), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 114/151 (75%), Positives = 127/151 (84%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 + +GF+ T+ D+L+ W RTGSL MTFGLACCAVEMM A RYDL+RFG R SPRQ Sbjct: 20 VLKEGFVTTTADKLINWTRTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGVVFRPSPRQ 79 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 SDVMIVAGTL NKMA ALRRVYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPV Sbjct: 80 SDVMIVAGTLCNKMAPALRRVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPV 139 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 D+YVPGCPPTAEAL+YG++ LQ KIRR + Sbjct: 140 DVYVPGCPPTAEALVYGVIQLQAKIRRTNTI 170 >gi|110225660|ref|YP_665666.1| NADH dehydrogenase subunit 10 [Nephroselmis olivacea] gi|6066175|gb|AAF03193.1|AF110138_25 NADH dehydrogenase subunit 10 [Nephroselmis olivacea] Length = 158 Score = 246 bits (628), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 115/145 (79%), Positives = 126/145 (86%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 FL+T +D L+ WAR GS+ MTFGLACCAVEMM RYDL+RFG R SPRQSDVMI Sbjct: 7 FLLTGIDSLLNWARKGSMWPMTFGLACCAVEMMHCGASRYDLDRFGIIFRPSPRQSDVMI 66 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGTLTNKMA ALR+VYDQMPEPR+V+SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP Sbjct: 67 VAGTLTNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 126 Query: 158 GCPPTAEALIYGILLLQKKIRRVGN 182 GCPPTAEAL+YG+L LQKKI+R N Sbjct: 127 GCPPTAEALLYGLLQLQKKIQRTNN 151 >gi|148244390|ref|YP_001219084.1| NADH dehydrogenase I chain B [Candidatus Vesicomyosocius okutanii HA] gi|218528012|sp|A5CXF8|NUOB_VESOH RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|146326217|dbj|BAF61360.1| NADH dehydrogenase I chain B [Candidatus Vesicomyosocius okutanii HA] Length = 159 Score = 246 bits (628), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 112/151 (74%), Positives = 131/151 (86%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 + +GF+ S+D+++ WARTGSL MTFGLACCAVEMM+A RYDL+RFG R +PRQ Sbjct: 6 LIKQGFVTMSLDRVINWARTGSLWPMTFGLACCAVEMMEAGSSRYDLDRFGIVFRPTPRQ 65 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 SD+MIVAGTLTNKMA ALR+VYDQMPEP++VISMGSCANGGGYYHYSY+V+RGCDRIVPV Sbjct: 66 SDLMIVAGTLTNKMAPALRKVYDQMPEPKWVISMGSCANGGGYYHYSYAVIRGCDRIVPV 125 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 DIYVPGCPPTAEAL+YGI+ LQ KIRR + Sbjct: 126 DIYVPGCPPTAEALLYGIMQLQDKIRRTNTI 156 >gi|74317161|ref|YP_314901.1| NADH dehydrogenase subunit B [Thiobacillus denitrificans ATCC 25259] gi|123611053|sp|Q3SEX7|NUOB_THIDA RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|74056656|gb|AAZ97096.1| NADH dehydrogenase I chain B [Thiobacillus denitrificans ATCC 25259] Length = 158 Score = 246 bits (628), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 116/151 (76%), Positives = 128/151 (84%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 + +GF+ T DQL+ + RTGS+ MTFGLACCAVEMMQA RYDL+RFG R SPRQ Sbjct: 6 VLEQGFVTTKADQLINYMRTGSMWPMTFGLACCAVEMMQAGASRYDLDRFGIVFRPSPRQ 65 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 SDVMIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPV Sbjct: 66 SDVMIVAGTLCNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPV 125 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 DIYVPGCPPTAEALI+GI+ LQKKIRR + Sbjct: 126 DIYVPGCPPTAEALIFGIIQLQKKIRRTNTI 156 >gi|312796901|ref|YP_004029823.1| NADH-quinone oxidoreductase chain B [Burkholderia rhizoxinica HKI 454] gi|312168676|emb|CBW75679.1| NADH-quinone oxidoreductase chain B (EC 1.6.5.3) [Burkholderia rhizoxinica HKI 454] Length = 173 Score = 246 bits (627), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 113/151 (74%), Positives = 127/151 (84%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 + +GF+ T+ D+L+ W RTGSL MTFGLACCAVEMM A RYDL+RFG R SPRQ Sbjct: 20 VLKEGFVTTTADKLINWTRTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGVVFRPSPRQ 79 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 SDVMIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPV Sbjct: 80 SDVMIVAGTLCNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPV 139 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 D+YVPGCPPTAEAL+YG++ LQ KIRR + Sbjct: 140 DVYVPGCPPTAEALVYGVIQLQAKIRRTNTI 170 >gi|206560702|ref|YP_002231467.1| NADH dehydrogenase subunit B [Burkholderia cenocepacia J2315] gi|198036744|emb|CAR52644.1| NADH dehydrogenase I chain B [Burkholderia cenocepacia J2315] Length = 173 Score = 246 bits (627), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 114/151 (75%), Positives = 127/151 (84%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 + +GF+ T+ D+L+ W RTGSL MTFGLACCAVEMM A RYDL+RFG R SPRQ Sbjct: 20 VLKEGFVTTTADKLINWTRTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGVVFRPSPRQ 79 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 SDVMIVAGTL NKMA ALRRVYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPV Sbjct: 80 SDVMIVAGTLCNKMAPALRRVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPV 139 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 D+YVPGCPPTAEAL+YG++ LQ KIRR + Sbjct: 140 DVYVPGCPPTAEALVYGVIQLQAKIRRTNTI 170 >gi|254251862|ref|ZP_04945180.1| NADH dehydrogenase beta subunit [Burkholderia dolosa AUO158] gi|124894471|gb|EAY68351.1| NADH dehydrogenase beta subunit [Burkholderia dolosa AUO158] Length = 173 Score = 246 bits (627), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 114/151 (75%), Positives = 127/151 (84%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 + +GF+ T+ D+L+ W RTGSL MTFGLACCAVEMM A RYDL+RFG R SPRQ Sbjct: 20 VLKEGFVTTTADKLINWTRTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGVVFRPSPRQ 79 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 SDVMIVAGTL NKMA ALRRVYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPV Sbjct: 80 SDVMIVAGTLCNKMAPALRRVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPV 139 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 D+YVPGCPPTAEAL+YG++ LQ KIRR + Sbjct: 140 DVYVPGCPPTAEALVYGVIQLQAKIRRTNTI 170 >gi|157825617|ref|YP_001493337.1| NADH dehydrogenase subunit B [Rickettsia akari str. Hartford] gi|218528016|sp|A8GN54|NUOB_RICAH RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|157799575|gb|ABV74829.1| NADH dehydrogenase subunit B [Rickettsia akari str. Hartford] Length = 174 Score = 246 bits (627), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 112/156 (71%), Positives = 135/156 (86%) Query: 29 ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88 +++EI+++GFL+T +D ++ WAR SL MTFGLACCAVEMMQA+ RYD++RFG R Sbjct: 12 LNNEISNRGFLLTKIDDIIGWARAHSLWPMTFGLACCAVEMMQAASSRYDMDRFGMLFRP 71 Query: 89 SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 148 SPRQSD+MIVAGTLTNKMA ALR+VYDQM P++V+SMGSCANGGGYYH+SYSVVRGCDR Sbjct: 72 SPRQSDLMIVAGTLTNKMAPALRKVYDQMAVPKWVLSMGSCANGGGYYHFSYSVVRGCDR 131 Query: 149 IVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 IVPVD+YVPGCPPTAEALIYG++ LQKKI+R K Sbjct: 132 IVPVDVYVPGCPPTAEALIYGLMQLQKKIKRTTGFK 167 >gi|30249736|ref|NP_841806.1| NADH dehydrogenase subunit B [Nitrosomonas europaea ATCC 19718] gi|75540322|sp|Q82TU4|NUOB_NITEU RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|30180773|emb|CAD85687.1| Respiratory-chain NADH dehydrogenase 20 Kd subunit [Nitrosomonas europaea ATCC 19718] Length = 158 Score = 246 bits (627), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 115/151 (76%), Positives = 127/151 (84%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 + KGF+ TS+D L+ W RTGS+ MTFGLACCAVEMMQ RYDL+RFG R SPRQ Sbjct: 6 VLDKGFVTTSLDSLINWGRTGSMWPMTFGLACCAVEMMQTGASRYDLDRFGIVFRPSPRQ 65 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 SDVMIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPV Sbjct: 66 SDVMIVAGTLCNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPV 125 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 DIYVPGCPPTAEAL+YGI+ LQ KI+R + Sbjct: 126 DIYVPGCPPTAEALLYGIIQLQNKIKRTNTI 156 >gi|300703643|ref|YP_003745245.1| NADH-quinone oxidoreductase subunit B [Ralstonia solanacearum CFBP2957] gi|299071306|emb|CBJ42624.1| NADH-quinone oxidoreductase subunit B [Ralstonia solanacearum CFBP2957] Length = 160 Score = 246 bits (627), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 114/151 (75%), Positives = 128/151 (84%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 + ++GF+ T+ D+L+ W RTGSL MTFGLACCAVEMM A RYDL+RFG R SPRQ Sbjct: 6 VLNEGFVTTTADKLINWTRTGSLWPMTFGLACCAVEMMHAGASRYDLDRFGVVFRPSPRQ 65 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 SDVMIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPV Sbjct: 66 SDVMIVAGTLCNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPV 125 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 D+YVPGCPPTAEALIYG++ LQ KIRR + Sbjct: 126 DVYVPGCPPTAEALIYGVIQLQAKIRRTNTI 156 >gi|121598483|ref|YP_992470.1| NADH dehydrogenase subunit B [Burkholderia mallei SAVP1] gi|124385700|ref|YP_001026727.1| NADH dehydrogenase subunit B [Burkholderia mallei NCTC 10229] gi|126439724|ref|YP_001058339.1| NADH dehydrogenase subunit B [Burkholderia pseudomallei 668] gi|126450627|ref|YP_001079988.1| NADH dehydrogenase subunit B [Burkholderia mallei NCTC 10247] gi|126451839|ref|YP_001065578.1| NADH dehydrogenase subunit B [Burkholderia pseudomallei 1106a] gi|167562178|ref|ZP_02355094.1| NADH dehydrogenase subunit B [Burkholderia oklahomensis EO147] gi|167569423|ref|ZP_02362297.1| NADH dehydrogenase subunit B [Burkholderia oklahomensis C6786] gi|167580423|ref|ZP_02373297.1| NADH dehydrogenase subunit B [Burkholderia thailandensis TXDOH] gi|167618532|ref|ZP_02387163.1| NADH dehydrogenase subunit B [Burkholderia thailandensis Bt4] gi|167718844|ref|ZP_02402080.1| NADH dehydrogenase subunit B [Burkholderia pseudomallei DM98] gi|167737853|ref|ZP_02410627.1| NADH dehydrogenase subunit B [Burkholderia pseudomallei 14] gi|167815037|ref|ZP_02446717.1| NADH dehydrogenase subunit B [Burkholderia pseudomallei 91] gi|167823453|ref|ZP_02454924.1| NADH dehydrogenase subunit B [Burkholderia pseudomallei 9] gi|167836050|ref|ZP_02462933.1| NADH dehydrogenase subunit B [Burkholderia thailandensis MSMB43] gi|167845005|ref|ZP_02470513.1| NADH dehydrogenase subunit B [Burkholderia pseudomallei B7210] gi|167893546|ref|ZP_02480948.1| NADH dehydrogenase subunit B [Burkholderia pseudomallei 7894] gi|167901992|ref|ZP_02489197.1| NADH dehydrogenase subunit B [Burkholderia pseudomallei NCTC 13177] gi|167910228|ref|ZP_02497319.1| NADH dehydrogenase subunit B [Burkholderia pseudomallei 112] gi|167918261|ref|ZP_02505352.1| NADH dehydrogenase subunit B [Burkholderia pseudomallei BCC215] gi|254175674|ref|ZP_04882334.1| NADH-quinone oxidoreductase, B subunit [Burkholderia mallei ATCC 10399] gi|254181186|ref|ZP_04887783.1| NADH-quinone oxidoreductase, B subunit [Burkholderia pseudomallei 1655] gi|254190549|ref|ZP_04897056.1| NADH-quinone oxidoreductase, B subunit [Burkholderia pseudomallei Pasteur 52237] gi|254195108|ref|ZP_04901537.1| NADH-quinone oxidoreductase, B subunit [Burkholderia pseudomallei S13] gi|254202109|ref|ZP_04908472.1| NADH-quinone oxidoreductase, B subunit [Burkholderia mallei FMH] gi|254258086|ref|ZP_04949140.1| NADH-quinone oxidoreductase, B subunit [Burkholderia pseudomallei 1710a] gi|254298534|ref|ZP_04965986.1| NADH-quinone oxidoreductase, B subunit [Burkholderia pseudomallei 406e] gi|254359861|ref|ZP_04976131.1| NADH-quinone oxidoreductase, B subunit [Burkholderia mallei 2002721280] gi|257139689|ref|ZP_05587951.1| NADH dehydrogenase subunit B [Burkholderia thailandensis E264] gi|218527942|sp|A3MIA2|NUOB1_BURM7 RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName: Full=NADH dehydrogenase I subunit B 1; AltName: Full=NDH-1 subunit B 1 gi|218527943|sp|A2S458|NUOB1_BURM9 RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName: Full=NADH dehydrogenase I subunit B 1; AltName: Full=NDH-1 subunit B 1 gi|218527965|sp|A1V2L7|NUOB1_BURMS RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName: Full=NADH dehydrogenase I subunit B 1; AltName: Full=NDH-1 subunit B 1 gi|218527966|sp|A3NTA7|NUOB1_BURP0 RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName: Full=NADH dehydrogenase I subunit B 1; AltName: Full=NDH-1 subunit B 1 gi|218527967|sp|A3N7L8|NUOB1_BURP6 RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName: Full=NADH dehydrogenase I subunit B 1; AltName: Full=NDH-1 subunit B 1 gi|218528060|sp|Q62IN6|NUOB1_BURMA RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName: Full=NADH dehydrogenase I subunit B 1; AltName: Full=NDH-1 subunit B 1 gi|218528063|sp|Q2SZN4|NUOB_BURTA RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|218528080|sp|Q63VN2|NUOB1_BURPS RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName: Full=NADH dehydrogenase I subunit B 1; AltName: Full=NDH-1 subunit B 1 gi|218528081|sp|Q3JUA8|NUOB1_BURP1 RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName: Full=NADH dehydrogenase I subunit B 1; AltName: Full=NDH-1 subunit B 1 gi|121227293|gb|ABM49811.1| NADH-quinone oxidoreductase, B subunit [Burkholderia mallei SAVP1] gi|124293720|gb|ABN02989.1| NADH-quinone oxidoreductase, B subunit [Burkholderia mallei NCTC 10229] gi|126219217|gb|ABN82723.1| NADH-quinone oxidoreductase, B subunit [Burkholderia pseudomallei 668] gi|126225481|gb|ABN89021.1| NADH-quinone oxidoreductase, B subunit [Burkholderia pseudomallei 1106a] gi|126243497|gb|ABO06590.1| NADH-quinone oxidoreductase, B subunit [Burkholderia mallei NCTC 10247] gi|147746356|gb|EDK53433.1| NADH-quinone oxidoreductase, B subunit [Burkholderia mallei FMH] gi|148029101|gb|EDK87006.1| NADH-quinone oxidoreductase, B subunit [Burkholderia mallei 2002721280] gi|157808426|gb|EDO85596.1| NADH-quinone oxidoreductase, B subunit [Burkholderia pseudomallei 406e] gi|157938224|gb|EDO93894.1| NADH-quinone oxidoreductase, B subunit [Burkholderia pseudomallei Pasteur 52237] gi|160696718|gb|EDP86688.1| NADH-quinone oxidoreductase, B subunit [Burkholderia mallei ATCC 10399] gi|169651856|gb|EDS84549.1| NADH-quinone oxidoreductase, B subunit [Burkholderia pseudomallei S13] gi|184211724|gb|EDU08767.1| NADH-quinone oxidoreductase, B subunit [Burkholderia pseudomallei 1655] gi|254216775|gb|EET06159.1| NADH-quinone oxidoreductase, B subunit [Burkholderia pseudomallei 1710a] Length = 159 Score = 246 bits (627), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 114/151 (75%), Positives = 127/151 (84%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 + +GF+ T+ D+L+ W RTGSL MTFGLACCAVEMM A RYDL+RFG R SPRQ Sbjct: 6 VLKEGFVTTTADKLINWTRTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGVVFRPSPRQ 65 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 SDVMIVAGTL NKMA ALRRVYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPV Sbjct: 66 SDVMIVAGTLCNKMAPALRRVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPV 125 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 D+YVPGCPPTAEAL+YG++ LQ KIRR + Sbjct: 126 DVYVPGCPPTAEALVYGVIQLQAKIRRTSTI 156 >gi|73540665|ref|YP_295185.1| NADH dehydrogenase subunit B [Ralstonia eutropha JMP134] gi|123625484|sp|Q473U2|NUOB_RALEJ RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|72118078|gb|AAZ60341.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit [Ralstonia eutropha JMP134] Length = 160 Score = 246 bits (627), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 114/151 (75%), Positives = 128/151 (84%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 + ++GF+ T+ D+L+ W RTGSL MTFGLACCAVEMM A RYDL+RFG R SPRQ Sbjct: 6 VLNEGFVTTTADKLINWTRTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGVVFRPSPRQ 65 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 SDVMIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPV Sbjct: 66 SDVMIVAGTLCNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPV 125 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 DIYVPGCPPTAEALIYG++ LQ KI+R + Sbjct: 126 DIYVPGCPPTAEALIYGVIQLQNKIKRTNTI 156 >gi|189351038|ref|YP_001946666.1| NADH dehydrogenase subunit B [Burkholderia multivorans ATCC 17616] gi|189335060|dbj|BAG44130.1| NADH dehydrogenase I chain B [Burkholderia multivorans ATCC 17616] Length = 173 Score = 245 bits (626), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 114/151 (75%), Positives = 127/151 (84%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 + +GF+ T+ D+L+ W RTGSL MTFGLACCAVEMM A RYDL+RFG R SPRQ Sbjct: 20 VLKEGFVTTTADKLINWTRTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGVVFRPSPRQ 79 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 SDVMIVAGTL NKMA ALRRVYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPV Sbjct: 80 SDVMIVAGTLCNKMAPALRRVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPV 139 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 D+YVPGCPPTAEAL+YG++ LQ KIRR + Sbjct: 140 DVYVPGCPPTAEALVYGVIQLQAKIRRTNTI 170 >gi|118602276|ref|YP_903491.1| NADH-quinone oxidoreductase, B subunit [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|218528022|sp|A1AVR3|NUOB_RUTMC RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|118567215|gb|ABL02020.1| NADH dehydrogenase subunit B [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 159 Score = 245 bits (626), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 113/151 (74%), Positives = 130/151 (86%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 + +GF+ TS++ ++ WARTGSL MTFGLACCAVEMM+A RYDL+RFG R +PRQ Sbjct: 6 LMKQGFVTTSLNNVINWARTGSLWPMTFGLACCAVEMMEAGSSRYDLDRFGIVFRPTPRQ 65 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 SD+MIVAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSY+VVRGCDRIVPV Sbjct: 66 SDLMIVAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYAVVRGCDRIVPV 125 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 DIYVPGCPPTAEAL+YGI+ LQ KIR + Sbjct: 126 DIYVPGCPPTAEALLYGIIQLQDKIRSTNTI 156 >gi|78067045|ref|YP_369814.1| NADH dehydrogenase subunit B [Burkholderia sp. 383] gi|107023187|ref|YP_621514.1| NADH dehydrogenase subunit B [Burkholderia cenocepacia AU 1054] gi|115352337|ref|YP_774176.1| NADH dehydrogenase subunit B [Burkholderia ambifaria AMMD] gi|116690269|ref|YP_835892.1| NADH dehydrogenase subunit B [Burkholderia cenocepacia HI2424] gi|134296432|ref|YP_001120167.1| NADH dehydrogenase subunit B [Burkholderia vietnamiensis G4] gi|161524205|ref|YP_001579217.1| NADH dehydrogenase subunit B [Burkholderia multivorans ATCC 17616] gi|167585972|ref|ZP_02378360.1| NADH-quinone oxidoreductase, B subunit [Burkholderia ubonensis Bu] gi|170698110|ref|ZP_02889190.1| NADH-quinone oxidoreductase, B subunit [Burkholderia ambifaria IOP40-10] gi|170733608|ref|YP_001765555.1| NADH dehydrogenase subunit B [Burkholderia cenocepacia MC0-3] gi|171316304|ref|ZP_02905525.1| NADH-quinone oxidoreductase, B subunit [Burkholderia ambifaria MEX-5] gi|172061208|ref|YP_001808860.1| NADH dehydrogenase subunit B [Burkholderia ambifaria MC40-6] gi|221211736|ref|ZP_03584715.1| NADH-quinone oxidoreductase subunit b (nadh dehydrogenase i subunit b) (ndh-1 subunit b) [Burkholderia multivorans CGD1] gi|122322642|sp|Q0BDD1|NUOB_BURCM RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|123244856|sp|Q1BV14|NUOB_BURCA RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|123568005|sp|Q39EE6|NUOB_BURS3 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|218527979|sp|B1YTQ6|NUOB_BURA4 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|218527980|sp|B1JVP0|NUOB_BURCC RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|218527981|sp|A0K922|NUOB_BURCH RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|218527982|sp|A4JGC9|NUOB_BURVG RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|218528023|sp|A9AFY8|NUOB_BURM1 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|218528071|sp|B4E5M1|NUOB_BURCJ RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|77967790|gb|ABB09170.1| NADH dehydrogenase subunit B [Burkholderia sp. 383] gi|105893376|gb|ABF76541.1| NADH dehydrogenase subunit B [Burkholderia cenocepacia AU 1054] gi|115282325|gb|ABI87842.1| NADH dehydrogenase subunit B [Burkholderia ambifaria AMMD] gi|116648358|gb|ABK08999.1| NADH dehydrogenase subunit B [Burkholderia cenocepacia HI2424] gi|134139589|gb|ABO55332.1| NADH dehydrogenase subunit B [Burkholderia vietnamiensis G4] gi|160341634|gb|ABX14720.1| NADH-quinone oxidoreductase, B subunit [Burkholderia multivorans ATCC 17616] gi|169816850|gb|ACA91433.1| NADH-quinone oxidoreductase, B subunit [Burkholderia cenocepacia MC0-3] gi|170136968|gb|EDT05216.1| NADH-quinone oxidoreductase, B subunit [Burkholderia ambifaria IOP40-10] gi|171098530|gb|EDT43331.1| NADH-quinone oxidoreductase, B subunit [Burkholderia ambifaria MEX-5] gi|171993725|gb|ACB64644.1| NADH-quinone oxidoreductase, B subunit [Burkholderia ambifaria MC40-6] gi|221169097|gb|EEE01565.1| NADH-quinone oxidoreductase subunit b (nadh dehydrogenase i subunit b) (ndh-1 subunit b) [Burkholderia multivorans CGD1] gi|325520398|gb|EGC99516.1| NADH dehydrogenase subunit B [Burkholderia sp. TJI49] Length = 159 Score = 245 bits (626), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 114/151 (75%), Positives = 127/151 (84%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 + +GF+ T+ D+L+ W RTGSL MTFGLACCAVEMM A RYDL+RFG R SPRQ Sbjct: 6 VLKEGFVTTTADKLINWTRTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGVVFRPSPRQ 65 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 SDVMIVAGTL NKMA ALRRVYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPV Sbjct: 66 SDVMIVAGTLCNKMAPALRRVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPV 125 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 D+YVPGCPPTAEAL+YG++ LQ KIRR + Sbjct: 126 DVYVPGCPPTAEALVYGVIQLQAKIRRTNTI 156 >gi|53718848|ref|YP_107834.1| NADH dehydrogenase subunit B [Burkholderia pseudomallei K96243] gi|53725818|ref|YP_103433.1| NADH dehydrogenase subunit B [Burkholderia mallei ATCC 23344] gi|76808565|ref|YP_332845.1| NADH dehydrogenase subunit B [Burkholderia pseudomallei 1710b] gi|83720537|ref|YP_441615.1| NADH dehydrogenase subunit B [Burkholderia thailandensis E264] gi|134283897|ref|ZP_01770593.1| NADH-quinone oxidoreductase, B subunit [Burkholderia pseudomallei 305] gi|251767151|ref|ZP_02266185.2| NADH-quinone oxidoreductase, B subunit [Burkholderia mallei PRL-20] gi|254207439|ref|ZP_04913789.1| NADH-quinone oxidoreductase, B subunit [Burkholderia mallei JHU] gi|52209262|emb|CAH35207.1| NADH dehydrogenase I chain B [Burkholderia pseudomallei K96243] gi|52429241|gb|AAU49834.1| NADH-quinone oxidoreductase, B subunit [Burkholderia mallei ATCC 23344] gi|76578018|gb|ABA47493.1| NADH dehydrogenase I chain B [Burkholderia pseudomallei 1710b] gi|83654362|gb|ABC38425.1| NADH-quinone oxidoreductase, B subunit [Burkholderia thailandensis E264] gi|134244686|gb|EBA44784.1| NADH-quinone oxidoreductase, B subunit [Burkholderia pseudomallei 305] gi|147751333|gb|EDK58400.1| NADH-quinone oxidoreductase, B subunit [Burkholderia mallei JHU] gi|243063701|gb|EES45887.1| NADH-quinone oxidoreductase, B subunit [Burkholderia mallei PRL-20] Length = 173 Score = 245 bits (626), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 114/151 (75%), Positives = 127/151 (84%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 + +GF+ T+ D+L+ W RTGSL MTFGLACCAVEMM A RYDL+RFG R SPRQ Sbjct: 20 VLKEGFVTTTADKLINWTRTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGVVFRPSPRQ 79 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 SDVMIVAGTL NKMA ALRRVYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPV Sbjct: 80 SDVMIVAGTLCNKMAPALRRVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPV 139 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 D+YVPGCPPTAEAL+YG++ LQ KIRR + Sbjct: 140 DVYVPGCPPTAEALVYGVIQLQAKIRRTSTI 170 >gi|307168025|gb|EFN61349.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial [Camponotus floridanus] Length = 222 Score = 245 bits (626), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 111/147 (75%), Positives = 129/147 (87%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 + + VD L+ W R GS+ MTFGLACCAVEMM + PRYD++RFG RASPRQSDV+I Sbjct: 71 YALARVDDLLNWGRKGSIWPMTFGLACCAVEMMHIAAPRYDMDRFGVVFRASPRQSDVII 130 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGTLTNKMA ALR++YDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRI+PVDIYVP Sbjct: 131 VAGTLTNKMAPALRKIYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVP 190 Query: 158 GCPPTAEALIYGILLLQKKIRRVGNVK 184 GCPPTAEAL+YGIL LQKKI+R+ +++ Sbjct: 191 GCPPTAEALLYGILQLQKKIKRMQSIQ 217 >gi|28198172|ref|NP_778486.1| NADH dehydrogenase subunit B [Xylella fastidiosa Temecula1] gi|28056242|gb|AAO28135.1| NADH-ubiquinone oxidoreductase NQO6 subunit [Xylella fastidiosa Temecula1] Length = 191 Score = 245 bits (626), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 115/154 (74%), Positives = 129/154 (83%) Query: 30 SSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS 89 S + KG++ TSVD L+ WARTGS+ MTFGLACCAVEMM A R DL+R+G R S Sbjct: 36 ESPLLQKGYVTTSVDALLNWARTGSMWPMTFGLACCAVEMMHAGAARLDLDRYGIVFRPS 95 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQSDVMIVAGTL NKMA ALR+VYDQMP+P++VISMGSCANGGGYYHYSYSVVRGCDRI Sbjct: 96 PRQSDVMIVAGTLVNKMAPALRKVYDQMPDPKWVISMGSCANGGGYYHYSYSVVRGCDRI 155 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 VPVD+YVPGCPPTAEAL+YGIL LQKKI R + Sbjct: 156 VPVDVYVPGCPPTAEALVYGILQLQKKIWRTKTI 189 >gi|168032288|ref|XP_001768651.1| predicted protein [Physcomitrella patens subsp. patens] gi|162680150|gb|EDQ66589.1| predicted protein [Physcomitrella patens subsp. patens] Length = 201 Score = 245 bits (625), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 118/159 (74%), Positives = 131/159 (82%), Gaps = 5/159 (3%) Query: 30 SSEITHKG-----FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF 84 +S T KG F+++ VD L+ WARTGS+ MTFGLACCAVEMM RYDL+RFG Sbjct: 37 TSSTTSKGGPGAEFVLSKVDALMNWARTGSIWPMTFGLACCAVEMMHTGAARYDLDRFGI 96 Query: 85 APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR 144 R SPRQSD MIVAGTLTNKMA ALR+VYDQMPEPR+V+SMGSCANGGGYYHYSYSVVR Sbjct: 97 IFRPSPRQSDCMIVAGTLTNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSVVR 156 Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 GCDRIVPVDIYVPGCPPTAEAL+YG+L LQKKI R +V Sbjct: 157 GCDRIVPVDIYVPGCPPTAEALLYGLLQLQKKINRRKDV 195 >gi|11466592|ref|NP_066482.1| NADH dehydrogenase subunit 10 [Rhodomonas salina] gi|10444179|gb|AAG17753.1|AF288090_29 NADH dehydrogenase subunit 10 [Rhodomonas salina] Length = 158 Score = 245 bits (625), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 112/147 (76%), Positives = 128/147 (87%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 F+++ +D L+ WAR GSL MTFGLACCAVEMM A RYD +RFG RASPRQSD+MI Sbjct: 7 FVISKIDDLLNWARRGSLWPMTFGLACCAVEMMHAGASRYDFDRFGIIFRASPRQSDIMI 66 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYH+SYSVVRGCD+IVPVD++VP Sbjct: 67 VAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHFSYSVVRGCDKIVPVDVFVP 126 Query: 158 GCPPTAEALIYGILLLQKKIRRVGNVK 184 GCPPTAEAL+YGIL LQKKI+R V+ Sbjct: 127 GCPPTAEALLYGILQLQKKIKRTKTVQ 153 >gi|66809217|ref|XP_638331.1| NADH-ubiquinone oxidoreductase 20 kDa subunit [Dictyostelium discoideum AX4] gi|74853922|sp|Q54NI6|NDUS7_DICDI RecName: Full=NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial; Flags: Precursor gi|60466783|gb|EAL64831.1| NADH-ubiquinone oxidoreductase 20 kDa subunit [Dictyostelium discoideum AX4] Length = 178 Score = 245 bits (625), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 116/165 (70%), Positives = 133/165 (80%) Query: 19 LEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78 L K+ A + + T +++ +D LV WARTGSL MTFGLACCAVEMMQ RYD Sbjct: 8 LSKLLASSFKQAPPNTLPEVVISKIDGLVNWARTGSLWPMTFGLACCAVEMMQGYAARYD 67 Query: 79 LERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY 138 ++RFG PRASPRQSD +IVAGTLTNKMA ALR+VYDQMP PRYV+SMGSCANGGGYYHY Sbjct: 68 MDRFGVIPRASPRQSDCIIVAGTLTNKMAPALRKVYDQMPNPRYVVSMGSCANGGGYYHY 127 Query: 139 SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 SYSVVRGCDRI+PVD+Y+PGCPPTAEA +YGIL LQKKI R N+ Sbjct: 128 SYSVVRGCDRIIPVDVYIPGCPPTAEAFVYGILQLQKKIGREQNL 172 >gi|182680806|ref|YP_001828966.1| NADH dehydrogenase subunit B [Xylella fastidiosa M23] gi|238065246|sp|B2I785|NUOB_XYLF2 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|238065259|sp|Q87EQ4|NUOB_XYLFT RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|182630916|gb|ACB91692.1| NADH-quinone oxidoreductase, B subunit [Xylella fastidiosa M23] gi|307579274|gb|ADN63243.1| NADH dehydrogenase subunit B [Xylella fastidiosa subsp. fastidiosa GB514] Length = 184 Score = 245 bits (625), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 115/154 (74%), Positives = 129/154 (83%) Query: 30 SSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS 89 S + KG++ TSVD L+ WARTGS+ MTFGLACCAVEMM A R DL+R+G R S Sbjct: 29 ESPLLQKGYVTTSVDALLNWARTGSMWPMTFGLACCAVEMMHAGAARLDLDRYGIVFRPS 88 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQSDVMIVAGTL NKMA ALR+VYDQMP+P++VISMGSCANGGGYYHYSYSVVRGCDRI Sbjct: 89 PRQSDVMIVAGTLVNKMAPALRKVYDQMPDPKWVISMGSCANGGGYYHYSYSVVRGCDRI 148 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 VPVD+YVPGCPPTAEAL+YGIL LQKKI R + Sbjct: 149 VPVDVYVPGCPPTAEALVYGILQLQKKIWRTKTI 182 >gi|326433088|gb|EGD78658.1| NDUFS7 protein [Salpingoeca sp. ATCC 50818] Length = 214 Score = 245 bits (625), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 111/142 (78%), Positives = 125/142 (88%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 + + +D LV WAR S+ MTFGLACCAVEMM + PRYD++RFG RASPRQSDVMI Sbjct: 63 YALAKLDDLVNWARKSSMWPMTFGLACCAVEMMHVAAPRYDMDRFGIVFRASPRQSDVMI 122 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGTLTNKMA ALR+VYDQMPEPR+V+SMGSCANGGGYYHYSY+VVRGCDRIVPVDIYVP Sbjct: 123 VAGTLTNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYAVVRGCDRIVPVDIYVP 182 Query: 158 GCPPTAEALIYGILLLQKKIRR 179 GCPPTAEAL+YG+L LQKKI+R Sbjct: 183 GCPPTAEALLYGLLQLQKKIKR 204 >gi|15836909|ref|NP_297597.1| NADH dehydrogenase subunit B [Xylella fastidiosa 9a5c] gi|9105129|gb|AAF83117.1|AE003884_2 NADH-ubiquinone oxidoreductase, NQO6 subunit [Xylella fastidiosa 9a5c] Length = 191 Score = 245 bits (625), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 115/150 (76%), Positives = 128/150 (85%) Query: 30 SSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS 89 S + KG++ TSVD L+ WARTGS+ MTFGLACCAVEMM A R DL+R+G R S Sbjct: 36 ESPLLQKGYVTTSVDALLNWARTGSMWPMTFGLACCAVEMMHAGAARLDLDRYGIVFRPS 95 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQSDVMIVAGTL NKMA ALR+VYDQMP+P++VISMGSCANGGGYYHYSYSVVRGCDRI Sbjct: 96 PRQSDVMIVAGTLVNKMAPALRKVYDQMPDPKWVISMGSCANGGGYYHYSYSVVRGCDRI 155 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRR 179 VPVD+YVPGCPPTAEAL+YGIL LQKKI R Sbjct: 156 VPVDVYVPGCPPTAEALVYGILQLQKKIWR 185 >gi|288942133|ref|YP_003444373.1| NADH-quinone oxidoreductase subunit B [Allochromatium vinosum DSM 180] gi|288897505|gb|ADC63341.1| NADH-quinone oxidoreductase, B subunit [Allochromatium vinosum DSM 180] Length = 158 Score = 245 bits (625), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 114/151 (75%), Positives = 128/151 (84%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 + +G + T+ D+L+ WARTGSL MTFGLACCA+EMM A RYDL+RFG R SPRQ Sbjct: 6 LLEEGVVTTTADKLINWARTGSLWPMTFGLACCAIEMMHAGAARYDLDRFGIIFRPSPRQ 65 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 SDVMIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPV Sbjct: 66 SDVMIVAGTLVNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPV 125 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 D+YVPGCPPTAEAL+YGIL LQ+KIRR + Sbjct: 126 DVYVPGCPPTAEALLYGILQLQEKIRRTNTI 156 >gi|152980178|ref|YP_001353153.1| NADH dehydrogenase I chain B [Janthinobacterium sp. Marseille] gi|218527992|sp|A6SY06|NUOB_JANMA RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|151280255|gb|ABR88665.1| NADH dehydrogenase I chain B [Janthinobacterium sp. Marseille] Length = 158 Score = 245 bits (625), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 113/151 (74%), Positives = 128/151 (84%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 + ++GF+ T+ D+L+ W RTGS+ MTFGLACCAVEMM A RYDL+RFG R SPRQ Sbjct: 6 VLNEGFVTTTADKLINWTRTGSMWPMTFGLACCAVEMMHAGASRYDLDRFGVVFRPSPRQ 65 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 SDVMIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPV Sbjct: 66 SDVMIVAGTLCNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPV 125 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 D+YVPGCPPTAEAL+YGI+ LQ KIRR + Sbjct: 126 DVYVPGCPPTAEALLYGIMQLQNKIRRTNTI 156 >gi|15239782|ref|NP_196738.1| NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial [Arabidopsis thaliana] gi|2499327|sp|Q42577|NDUS7_ARATH RecName: Full=NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial; AltName: Full=Complex I-20kD; Short=CI-20kD; Flags: Precursor gi|16226316|gb|AAL16132.1|AF428300_1 AT5g11770/T22P22_160 [Arabidopsis thaliana] gi|643090|emb|CAA58887.1| NADH dehydrogenase [Arabidopsis thaliana] gi|7573391|emb|CAB87695.1| NADH dehydrogenase (ubiquinone) [Arabidopsis thaliana] gi|15810287|gb|AAL07031.1| putative NADH dehydrogenase (ubiquinone) [Arabidopsis thaliana] gi|20466764|gb|AAM20699.1| NADH dehydrogenase / ubiquinone [Arabidopsis thaliana] gi|21537333|gb|AAM61674.1| NADH dehydrogenase ubiquinone [Arabidopsis thaliana] gi|22136468|gb|AAM91312.1| NADH dehydrogenase / ubiquinone [Arabidopsis thaliana] gi|332004336|gb|AED91719.1| NADH dehydrogenase (ubiquinone) Fe-S protein 7 [Arabidopsis thaliana] Length = 218 Score = 245 bits (625), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 114/142 (80%), Positives = 124/142 (87%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 F+++ VD L+ WARTGS+ MTFGLACCAVEMM RYDL+RFG R SPRQSD MI Sbjct: 67 FVISKVDDLMNWARTGSIWPMTFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDCMI 126 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP Sbjct: 127 VAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 186 Query: 158 GCPPTAEALIYGILLLQKKIRR 179 GCPPTAEAL+YG+L LQKKI R Sbjct: 187 GCPPTAEALLYGLLQLQKKINR 208 >gi|218528068|sp|Q9PGJ4|NUOB_XYLFA RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B Length = 184 Score = 245 bits (625), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 115/150 (76%), Positives = 128/150 (85%) Query: 30 SSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS 89 S + KG++ TSVD L+ WARTGS+ MTFGLACCAVEMM A R DL+R+G R S Sbjct: 29 ESPLLQKGYVTTSVDALLNWARTGSMWPMTFGLACCAVEMMHAGAARLDLDRYGIVFRPS 88 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQSDVMIVAGTL NKMA ALR+VYDQMP+P++VISMGSCANGGGYYHYSYSVVRGCDRI Sbjct: 89 PRQSDVMIVAGTLVNKMAPALRKVYDQMPDPKWVISMGSCANGGGYYHYSYSVVRGCDRI 148 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRR 179 VPVD+YVPGCPPTAEAL+YGIL LQKKI R Sbjct: 149 VPVDVYVPGCPPTAEALVYGILQLQKKIWR 178 >gi|71275689|ref|ZP_00651974.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit [Xylella fastidiosa Dixon] gi|71897855|ref|ZP_00680081.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit [Xylella fastidiosa Ann-1] gi|170729490|ref|YP_001774923.1| NADH dehydrogenase subunit B [Xylella fastidiosa M12] gi|254767800|sp|B0U1W6|NUOB_XYLFM RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|71163580|gb|EAO13297.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit [Xylella fastidiosa Dixon] gi|71732410|gb|EAO34464.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit [Xylella fastidiosa Ann-1] gi|167964283|gb|ACA11293.1| NADH dehydrogenase [Xylella fastidiosa M12] Length = 184 Score = 245 bits (625), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 115/154 (74%), Positives = 129/154 (83%) Query: 30 SSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS 89 S + KG++ TSVD L+ WARTGS+ MTFGLACCAVEMM A R DL+R+G R S Sbjct: 29 ESPLLQKGYVTTSVDALLNWARTGSMWPMTFGLACCAVEMMHAGAARLDLDRYGIVFRPS 88 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQSDVMIVAGTL NKMA ALR+VYDQMP+P++VISMGSCANGGGYYHYSYSVVRGCDRI Sbjct: 89 PRQSDVMIVAGTLVNKMAPALRKVYDQMPDPKWVISMGSCANGGGYYHYSYSVVRGCDRI 148 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 VPVD+YVPGCPPTAEAL+YGIL LQKKI R + Sbjct: 149 VPVDVYVPGCPPTAEALVYGILQLQKKIWRTQTI 182 >gi|226372670|gb|ACO51960.1| NADH dehydrogenase iron-sulfur protein 7, mitochondrial precursor [Rana catesbeiana] Length = 217 Score = 244 bits (624), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 124/172 (72%), Positives = 138/172 (80%), Gaps = 3/172 (1%) Query: 4 TTVNQKIISGQSSCSLEKVDADFSRISSEITHKG-FLVTSVDQLVTWARTGSLMWMTFGL 62 T N+ IS +S +K A + SS + KG F+VT +D LV WAR SL MTFGL Sbjct: 33 TADNENSIS--ASLVRQKSSAVPATKSSVPSGKGEFIVTKLDDLVNWARRSSLWPMTFGL 90 Query: 63 ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122 ACCAVEMM + PRYD++RFG RASPRQ+DVMIVAGTLTNKMA ALR+VYDQMPEPRY Sbjct: 91 ACCAVEMMHMAAPRYDMDRFGVVFRASPRQADVMIVAGTLTNKMAPALRKVYDQMPEPRY 150 Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQ 174 V+SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQ Sbjct: 151 VVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQ 202 >gi|71897767|ref|ZP_00679993.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit [Xylella fastidiosa Ann-1] gi|71732322|gb|EAO34376.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit [Xylella fastidiosa Ann-1] Length = 184 Score = 244 bits (624), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 115/154 (74%), Positives = 129/154 (83%) Query: 30 SSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS 89 S + KG++ TSVD L+ WARTGS+ MTFGLACCAVEMM A R DL+R+G R S Sbjct: 29 ESPLLQKGYVTTSVDALLNWARTGSMWPMTFGLACCAVEMMHAGAARLDLDRYGIVFRPS 88 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQSDVMIVAGTL NKMA ALR+VYDQMP+P++VISMGSCANGGGYYHYSYSVVRGCDRI Sbjct: 89 PRQSDVMIVAGTLVNKMAPALRKVYDQMPDPKWVISMGSCANGGGYYHYSYSVVRGCDRI 148 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 VPVD+YVPGCPPTAEAL+YGIL LQKKI R + Sbjct: 149 VPVDVYVPGCPPTAEALVYGILQLQKKIWRTQTI 182 >gi|71906589|ref|YP_284176.1| NADH dehydrogenase subunit B [Dechloromonas aromatica RCB] gi|123627979|sp|Q47HH5|NUOB_DECAR RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|71846210|gb|AAZ45706.1| NADH dehydrogenase subunit B [Dechloromonas aromatica RCB] Length = 158 Score = 244 bits (624), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 115/151 (76%), Positives = 129/151 (85%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 + +GF+ T+ D+L+ + RTGSL MTFGLACCAVEM+ A + RYDL+RFG R SPRQ Sbjct: 6 VLQEGFVTTTADKLINYMRTGSLWPMTFGLACCAVEMIHAGVSRYDLDRFGVVFRPSPRQ 65 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 SDVMIVAGTLTNKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPV Sbjct: 66 SDVMIVAGTLTNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPV 125 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 DIYVPGCPPTAEALIYGI+ LQ KIRR + Sbjct: 126 DIYVPGCPPTAEALIYGIIQLQNKIRRTNTI 156 >gi|221199657|ref|ZP_03572701.1| NADH-quinone oxidoreductase, B subunit [Burkholderia multivorans CGD2M] gi|221205443|ref|ZP_03578458.1| NADH-quinone oxidoreductase, B subunit [Burkholderia multivorans CGD2] gi|221174281|gb|EEE06713.1| NADH-quinone oxidoreductase, B subunit [Burkholderia multivorans CGD2] gi|221180942|gb|EEE13345.1| NADH-quinone oxidoreductase, B subunit [Burkholderia multivorans CGD2M] Length = 153 Score = 244 bits (624), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 114/148 (77%), Positives = 126/148 (85%) Query: 36 KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDV 95 +GF+ T+ D+L+ W RTGSL MTFGLACCAVEMM A RYDL+RFG R SPRQSDV Sbjct: 3 EGFVTTTADKLINWTRTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGVVFRPSPRQSDV 62 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155 MIVAGTL NKMA ALRRVYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVD+Y Sbjct: 63 MIVAGTLCNKMAPALRRVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVY 122 Query: 156 VPGCPPTAEALIYGILLLQKKIRRVGNV 183 VPGCPPTAEAL+YG++ LQ KIRR + Sbjct: 123 VPGCPPTAEALVYGVIQLQAKIRRTNTI 150 >gi|224088884|ref|XP_002308574.1| predicted protein [Populus trichocarpa] gi|118481270|gb|ABK92582.1| unknown [Populus trichocarpa] gi|222854550|gb|EEE92097.1| predicted protein [Populus trichocarpa] Length = 213 Score = 244 bits (624), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 122/172 (70%), Positives = 135/172 (78%), Gaps = 8/172 (4%) Query: 16 SCSLEKVDADFSRI----SSEIT----HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAV 67 S S E A ++R SS +T F+++ VD L+ WARTGS+ MTFGLACCAV Sbjct: 32 SLSPEPTPAPYTRAPPPSSSSLTGLSKPAEFVISKVDSLMNWARTGSIWPMTFGLACCAV 91 Query: 68 EMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMG 127 EMM RYDL+RFG R SPRQSD MIVAGTLTNKMA ALR+VYDQMPEPR+VISMG Sbjct: 92 EMMHTGAARYDLDRFGIIFRPSPRQSDCMIVAGTLTNKMAPALRKVYDQMPEPRWVISMG 151 Query: 128 SCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179 SCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG+L LQKKI R Sbjct: 152 SCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGLLQLQKKIHR 203 >gi|3342734|gb|AAC27669.1| NUKM_HUMAN, partial CDS [Homo sapiens] Length = 158 Score = 244 bits (624), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 114/142 (80%), Positives = 126/142 (88%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 ++V +D LV WAR SL MTFGLACCAVEMM + PRYD++RFG RASPRQSDVMI Sbjct: 7 YVVAKLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQSDVMI 66 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGTLTNKMA ALR+VYDQMPEPRYV+SMGSCANGGGYYHYSYSVVRGCDRIVPVDIY+P Sbjct: 67 VAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYIP 126 Query: 158 GCPPTAEALIYGILLLQKKIRR 179 GCPPTAEAL+YGIL LQ+KI+R Sbjct: 127 GCPPTAEALLYGILQLQRKIKR 148 >gi|91782613|ref|YP_557819.1| NADH dehydrogenase subunit B [Burkholderia xenovorans LB400] gi|170696398|ref|ZP_02887527.1| NADH-quinone oxidoreductase, B subunit [Burkholderia graminis C4D1M] gi|186476763|ref|YP_001858233.1| NADH dehydrogenase subunit B [Burkholderia phymatum STM815] gi|187923341|ref|YP_001894983.1| NADH dehydrogenase subunit B [Burkholderia phytofirmans PsJN] gi|209518514|ref|ZP_03267335.1| NADH-quinone oxidoreductase, B subunit [Burkholderia sp. H160] gi|295676038|ref|YP_003604562.1| NADH-quinone oxidoreductase, B subunit [Burkholderia sp. CCGE1002] gi|296160630|ref|ZP_06843445.1| NADH-quinone oxidoreductase, B subunit [Burkholderia sp. Ch1-1] gi|307730339|ref|YP_003907563.1| NADH-quinone oxidoreductase subunit B [Burkholderia sp. CCGE1003] gi|323525437|ref|YP_004227590.1| NADH-quinone oxidoreductase subunit B [Burkholderia sp. CCGE1001] gi|123358972|sp|Q142H2|NUOB_BURXL RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|218528024|sp|B2JDM7|NUOB_BURP8 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|218528025|sp|B2T2E8|NUOB_BURPP RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|91686567|gb|ABE29767.1| NADH dehydrogenase subunit B [Burkholderia xenovorans LB400] gi|170138726|gb|EDT06925.1| NADH-quinone oxidoreductase, B subunit [Burkholderia graminis C4D1M] gi|184193222|gb|ACC71187.1| NADH-quinone oxidoreductase, B subunit [Burkholderia phymatum STM815] gi|187714535|gb|ACD15759.1| NADH-quinone oxidoreductase, B subunit [Burkholderia phytofirmans PsJN] gi|209501059|gb|EEA01094.1| NADH-quinone oxidoreductase, B subunit [Burkholderia sp. H160] gi|295435881|gb|ADG15051.1| NADH-quinone oxidoreductase, B subunit [Burkholderia sp. CCGE1002] gi|295889156|gb|EFG68959.1| NADH-quinone oxidoreductase, B subunit [Burkholderia sp. Ch1-1] gi|307584874|gb|ADN58272.1| NADH-quinone oxidoreductase, B subunit [Burkholderia sp. CCGE1003] gi|323382439|gb|ADX54530.1| NADH-quinone oxidoreductase, B subunit [Burkholderia sp. CCGE1001] Length = 159 Score = 244 bits (624), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 113/151 (74%), Positives = 127/151 (84%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 + +GF+ T+ D+L+ W RTGSL MTFGLACCAVEMM A RYDL+RFG R SPRQ Sbjct: 6 VLKEGFVTTTADKLINWTRTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGVVFRPSPRQ 65 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 SDVMIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPV Sbjct: 66 SDVMIVAGTLCNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPV 125 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 D+YVPGCPPTAEAL+YG++ LQ KIRR + Sbjct: 126 DVYVPGCPPTAEALVYGVIQLQAKIRRTNTI 156 >gi|67642191|ref|ZP_00440951.1| NADH-quinone oxidoreductase chain b (nadh dehydrogenasei, chain b) (ndh-1, chain b) [Burkholderia mallei GB8 horse 4] gi|217420025|ref|ZP_03451531.1| NADH-quinone oxidoreductase, B subunit [Burkholderia pseudomallei 576] gi|226195363|ref|ZP_03790952.1| NADH-quinone oxidoreductase, B subunit [Burkholderia pseudomallei Pakistan 9] gi|237811583|ref|YP_002896034.1| NADH-quinone oxidoreductase, b subunit [Burkholderia pseudomallei MSHR346] gi|242316907|ref|ZP_04815923.1| NADH-quinone oxidoreductase, B subunit [Burkholderia pseudomallei 1106b] gi|217397329|gb|EEC37345.1| NADH-quinone oxidoreductase, B subunit [Burkholderia pseudomallei 576] gi|225932565|gb|EEH28563.1| NADH-quinone oxidoreductase, B subunit [Burkholderia pseudomallei Pakistan 9] gi|237506251|gb|ACQ98569.1| NADH-quinone oxidoreductase, b subunit [Burkholderia pseudomallei MSHR346] gi|238523287|gb|EEP86726.1| NADH-quinone oxidoreductase chain b (nadh dehydrogenasei, chain b) (ndh-1, chain b) [Burkholderia mallei GB8 horse 4] gi|242140146|gb|EES26548.1| NADH-quinone oxidoreductase, B subunit [Burkholderia pseudomallei 1106b] Length = 153 Score = 244 bits (624), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 114/148 (77%), Positives = 126/148 (85%) Query: 36 KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDV 95 +GF+ T+ D+L+ W RTGSL MTFGLACCAVEMM A RYDL+RFG R SPRQSDV Sbjct: 3 EGFVTTTADKLINWTRTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGVVFRPSPRQSDV 62 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155 MIVAGTL NKMA ALRRVYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVD+Y Sbjct: 63 MIVAGTLCNKMAPALRRVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVY 122 Query: 156 VPGCPPTAEALIYGILLLQKKIRRVGNV 183 VPGCPPTAEAL+YG++ LQ KIRR + Sbjct: 123 VPGCPPTAEALVYGVIQLQAKIRRTSTI 150 >gi|297811291|ref|XP_002873529.1| hypothetical protein ARALYDRAFT_488014 [Arabidopsis lyrata subsp. lyrata] gi|297319366|gb|EFH49788.1| hypothetical protein ARALYDRAFT_488014 [Arabidopsis lyrata subsp. lyrata] Length = 211 Score = 244 bits (624), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 114/142 (80%), Positives = 124/142 (87%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 F+++ VD L+ WARTGS+ MTFGLACCAVEMM RYDL+RFG R SPRQSD MI Sbjct: 67 FVISKVDDLMNWARTGSIWPMTFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDCMI 126 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP Sbjct: 127 VAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 186 Query: 158 GCPPTAEALIYGILLLQKKIRR 179 GCPPTAEAL+YG+L LQKKI R Sbjct: 187 GCPPTAEALLYGLLQLQKKINR 208 >gi|88812975|ref|ZP_01128218.1| NADH dehydrogenase beta subunit [Nitrococcus mobilis Nb-231] gi|88789753|gb|EAR20877.1| NADH dehydrogenase beta subunit [Nitrococcus mobilis Nb-231] Length = 158 Score = 244 bits (624), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 113/151 (74%), Positives = 128/151 (84%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 + +G + TS D+L+ WARTGSL MTFGLACCAVEMM A RYDL+RFG R SPRQ Sbjct: 6 VLERGVVTTSADKLINWARTGSLWPMTFGLACCAVEMMHAGASRYDLDRFGIVFRPSPRQ 65 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 SDVMIVAGTL NKMA ALRRVYDQM +P++VISMGSCANGGGYYHYSY+VVRGCDRIVPV Sbjct: 66 SDVMIVAGTLVNKMAPALRRVYDQMADPKWVISMGSCANGGGYYHYSYAVVRGCDRIVPV 125 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 D+YVPGCPPTAEAL++GI+ LQKKIRR + Sbjct: 126 DVYVPGCPPTAEALLFGIIQLQKKIRRTNTI 156 >gi|219130938|ref|XP_002185609.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217402949|gb|EEC42907.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 166 Score = 244 bits (623), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 113/141 (80%), Positives = 126/141 (89%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 + ++ VD LV WAR GSL MTFGLACCAVEMM A+ RYD+ERFG RASPRQSDVMI Sbjct: 15 YAISRVDDLVNWARKGSLWPMTFGLACCAVEMMHAAASRYDMERFGMVFRASPRQSDVMI 74 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGTLTNKMA ALR+VYDQMPEPR+V+SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP Sbjct: 75 VAGTLTNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 134 Query: 158 GCPPTAEALIYGILLLQKKIR 178 GCPPTAEAL+YG++ LQKK++ Sbjct: 135 GCPPTAEALLYGLIQLQKKVK 155 >gi|332023286|gb|EGI63540.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial [Acromyrmex echinatior] Length = 224 Score = 244 bits (623), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 111/143 (77%), Positives = 125/143 (87%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 + + D L+ W R GSL MTFGLACCAVEMM + PRYD++RFG RASPRQSDV+I Sbjct: 73 YALARADDLLNWGRKGSLWPMTFGLACCAVEMMHIAAPRYDMDRFGVVFRASPRQSDVII 132 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGTLTNKMA ALRR+YDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRI+PVDIYVP Sbjct: 133 VAGTLTNKMAPALRRIYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVP 192 Query: 158 GCPPTAEALIYGILLLQKKIRRV 180 GCPPTAEAL+YG+L LQKKI+R+ Sbjct: 193 GCPPTAEALLYGVLQLQKKIKRM 215 >gi|225704208|gb|ACO07950.1| NADH dehydrogenase iron-sulfur protein 7, mitochondrial precursor [Oncorhynchus mykiss] Length = 218 Score = 244 bits (623), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 113/142 (79%), Positives = 125/142 (88%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 +++T +D LV WAR SL MTFGLACCAVEMM + PRYD++RFG RASP Q+DVMI Sbjct: 67 YVITKLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPGQADVMI 126 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSY+VVRGCDRIVPVDIYVP Sbjct: 127 VAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYAVVRGCDRIVPVDIYVP 186 Query: 158 GCPPTAEALIYGILLLQKKIRR 179 GCPPTAEAL+YG L LQKKI+R Sbjct: 187 GCPPTAEALLYGTLQLQKKIKR 208 >gi|331212725|ref|XP_003307632.1| NADH-ubiquinone oxidoreductase subunit [Puccinia graminis f. sp. tritici CRL 75-36-700-3] gi|309298035|gb|EFP74626.1| NADH-ubiquinone oxidoreductase subunit [Puccinia graminis f. sp. tritici CRL 75-36-700-3] Length = 261 Score = 244 bits (623), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 111/143 (77%), Positives = 128/143 (89%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 ++++++D++V WAR GS+ MTFGLACCAVEMM + RYD +RFG RASPRQSDVMI Sbjct: 110 YVISTIDKIVNWARQGSIWPMTFGLACCAVEMMHMAAARYDQDRFGIIFRASPRQSDVMI 169 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP Sbjct: 170 VAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 229 Query: 158 GCPPTAEALIYGILLLQKKIRRV 180 GCPPTAEAL+YG+L LQ+K+RR Sbjct: 230 GCPPTAEALMYGLLQLQRKMRRT 252 >gi|323452394|gb|EGB08268.1| NADH dehydrogenase subunit 10 [Aureococcus anophagefferens] Length = 162 Score = 244 bits (623), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 112/141 (79%), Positives = 127/141 (90%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 F+VT VD+LV WAR GS+ MTFGLACCAVEMM ++ RYD+ERFG RASPRQSDVMI Sbjct: 11 FMVTKVDELVNWARKGSIWPMTFGLACCAVEMMHSATARYDMERFGMVFRASPRQSDVMI 70 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGTLTNKMA ALR+VYDQMPEPR+V+SMGSCANGGGYYHYSY+VVRG DRIVPVDIYVP Sbjct: 71 VAGTLTNKMAPALRKVYDQMPEPRWVLSMGSCANGGGYYHYSYAVVRGVDRIVPVDIYVP 130 Query: 158 GCPPTAEALIYGILLLQKKIR 178 GCPPTAEAL+YG++ LQKK++ Sbjct: 131 GCPPTAEALLYGLIQLQKKVK 151 >gi|94309873|ref|YP_583083.1| NADH dehydrogenase subunit B [Cupriavidus metallidurans CH34] gi|113867071|ref|YP_725560.1| NADH dehydrogenase subunit B [Ralstonia eutropha H16] gi|194289160|ref|YP_002005067.1| NADH dehydrogenase subunit b [Cupriavidus taiwanensis LMG 19424] gi|122947021|sp|Q0KCS9|NUOB_RALEH RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|218527987|sp|B3R3W8|NUOB_CUPTR RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|218528006|sp|Q1LPW2|NUOB_RALME RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|93353725|gb|ABF07814.1| NADH dehydrogenase chain B [Cupriavidus metallidurans CH34] gi|113525847|emb|CAJ92192.1| NADH dehydrogenase chain B [Ralstonia eutropha H16] gi|193222995|emb|CAQ69000.1| NADH:ubiquinone oxidoreductase complex I, chain B [Cupriavidus taiwanensis LMG 19424] Length = 160 Score = 244 bits (623), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 113/151 (74%), Positives = 128/151 (84%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 + ++GF+ T+ D+L+ W RTGSL MTFGLACCAVEMM A RYD++RFG R SPRQ Sbjct: 6 VLNEGFVTTTADKLINWTRTGSLWPMTFGLACCAVEMMHAGAARYDMDRFGVIFRPSPRQ 65 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 SDVMIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPV Sbjct: 66 SDVMIVAGTLCNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPV 125 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 DIYVPGCPPTAEALIYG++ LQ KI+R + Sbjct: 126 DIYVPGCPPTAEALIYGVIQLQNKIKRTNTI 156 >gi|21243431|ref|NP_643013.1| NADH dehydrogenase subunit B [Xanthomonas axonopodis pv. citri str. 306] gi|21108984|gb|AAM37549.1| NADH-ubiquinone oxidoreductase NQO6 subunit [Xanthomonas axonopodis pv. citri str. 306] Length = 191 Score = 244 bits (623), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 115/154 (74%), Positives = 129/154 (83%) Query: 30 SSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS 89 + + KG++ TSVD L+ WARTGS+ MTFGLACCAVEMM A R DL+R+G R S Sbjct: 36 ENPLLEKGYVTTSVDALLNWARTGSMWPMTFGLACCAVEMMHAGASRLDLDRYGVVFRPS 95 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQSDVMIVAGTL NKMA ALR+VYDQMP+P++VISMGSCANGGGYYHYSYSVVRGCDRI Sbjct: 96 PRQSDVMIVAGTLVNKMAPALRKVYDQMPDPKWVISMGSCANGGGYYHYSYSVVRGCDRI 155 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 VPVDIYVPGCPPTAEAL+YGIL LQKKI R + Sbjct: 156 VPVDIYVPGCPPTAEALVYGILQLQKKIWRTQTI 189 >gi|186920122|ref|YP_001874776.1| NADH dehydrogenase subunit 10 [Hemiselmis andersenii] gi|186461068|gb|ACC78230.1| NADH dehydrogenase subunit 10 [Hemiselmis andersenii] Length = 182 Score = 244 bits (623), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 113/146 (77%), Positives = 128/146 (87%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 F+++ +D L+ WAR GSL MTFGLACCAVEMM A RYD +RFG RASPRQSDVMI Sbjct: 31 FVISKLDDLLNWARRGSLWPMTFGLACCAVEMMHAGASRYDFDRFGIIFRASPRQSDVMI 90 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSY+VVRGCDR+VPVDIYVP Sbjct: 91 VAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYAVVRGCDRVVPVDIYVP 150 Query: 158 GCPPTAEALIYGILLLQKKIRRVGNV 183 GCPPTAEAL+YGI+ LQKKI++ N+ Sbjct: 151 GCPPTAEALLYGIVQLQKKIKQNKNL 176 >gi|78485163|ref|YP_391088.1| NADH dehydrogenase subunit B [Thiomicrospira crunogena XCL-2] gi|123555687|sp|Q31HF9|NUOB_THICR RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|78363449|gb|ABB41414.1| NADH dehydrogenase I chain B [Thiomicrospira crunogena XCL-2] Length = 158 Score = 244 bits (623), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 114/151 (75%), Positives = 127/151 (84%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 + +G + TS D+L+ WARTGSL MTFGLACCAVEMM A RYDL+RFG R SPRQ Sbjct: 6 VLKEGVVTTSADKLINWARTGSLWPMTFGLACCAVEMMHAGASRYDLDRFGIIFRPSPRQ 65 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 SDVMIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPV Sbjct: 66 SDVMIVAGTLVNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPV 125 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 D+YVPGCPPTAEAL+YGI+ LQ KI+R + Sbjct: 126 DVYVPGCPPTAEALLYGIIQLQNKIKRTNTI 156 >gi|148361101|ref|YP_001252308.1| NADH dehydrogenase I subunit B [Legionella pneumophila str. Corby] gi|218527993|sp|A5IHW2|NUOB_LEGPC RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|148282874|gb|ABQ56962.1| NADH dehydrogenase I, B subunit [Legionella pneumophila str. Corby] Length = 158 Score = 244 bits (622), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 115/149 (77%), Positives = 129/149 (86%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP 90 +E+ K F +T+V++LV WAR+GS+ MTFGLACCAVEMM RYDL+RFG R SP Sbjct: 4 AELEKKVFELTTVEKLVGWARSGSMWPMTFGLACCAVEMMHVGAARYDLDRFGIIFRPSP 63 Query: 91 RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150 RQSDVMIVAGTL NKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRIV Sbjct: 64 RQSDVMIVAGTLCNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIV 123 Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRR 179 PVD+YVPGCPPTAEAL+YGI+ LQ KIRR Sbjct: 124 PVDVYVPGCPPTAEALLYGIIQLQNKIRR 152 >gi|330817791|ref|YP_004361496.1| NADH dehydrogenase subunit B [Burkholderia gladioli BSR3] gi|327370184|gb|AEA61540.1| NADH dehydrogenase subunit B [Burkholderia gladioli BSR3] Length = 159 Score = 244 bits (622), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 113/151 (74%), Positives = 127/151 (84%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 + +GF+ T+ D+L+ W RTGSL MTFGLACCAVEMM A RYDL+RFG R SPRQ Sbjct: 6 VLKEGFVTTTADKLINWTRTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGVVFRPSPRQ 65 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 SDVMIVAGTL NKMA ALRRVY+QM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPV Sbjct: 66 SDVMIVAGTLCNKMAPALRRVYEQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPV 125 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 D+YVPGCPPTAEAL+YG++ LQ KIRR + Sbjct: 126 DVYVPGCPPTAEALVYGVIQLQAKIRRTSTI 156 >gi|190575277|ref|YP_001973122.1| NADH dehydrogenase subunit B [Stenotrophomonas maltophilia K279a] gi|194366603|ref|YP_002029213.1| NADH dehydrogenase subunit B [Stenotrophomonas maltophilia R551-3] gi|254524125|ref|ZP_05136180.1| NADH-ubiquinone oxidoreductase Nqo6 subunit [Stenotrophomonas sp. SKA14] gi|218528009|sp|B4SQT5|NUOB_STRM5 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|218528010|sp|B2FNX8|NUOB_STRMK RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|190013199|emb|CAQ46832.1| putative NADH dehydrogenase I chain B [Stenotrophomonas maltophilia K279a] gi|194349407|gb|ACF52530.1| NADH-quinone oxidoreductase, B subunit [Stenotrophomonas maltophilia R551-3] gi|219721716|gb|EED40241.1| NADH-ubiquinone oxidoreductase Nqo6 subunit [Stenotrophomonas sp. SKA14] Length = 184 Score = 244 bits (622), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 114/154 (74%), Positives = 129/154 (83%) Query: 30 SSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS 89 + + KGF+ TSVD L+ WARTGS+ MTFGLACCAVEMM A R DL+R+G R S Sbjct: 29 DNPLLEKGFVTTSVDALLNWARTGSMWPMTFGLACCAVEMMHAGAARLDLDRYGVVFRPS 88 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQSDVMIVAGTL NKMA ALR+VYDQMP+P++VISMGSCANGGGYYHYSYSVVRGCDR+ Sbjct: 89 PRQSDVMIVAGTLVNKMAPALRKVYDQMPDPKWVISMGSCANGGGYYHYSYSVVRGCDRV 148 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 VPVD+YVPGCPPTAEAL+YGIL LQKKI R + Sbjct: 149 VPVDVYVPGCPPTAEALVYGILQLQKKIWRTQTI 182 >gi|21231959|ref|NP_637876.1| NADH dehydrogenase subunit B [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66767914|ref|YP_242676.1| NADH dehydrogenase subunit B [Xanthomonas campestris pv. campestris str. 8004] gi|188991030|ref|YP_001903040.1| NADH dehydrogenase subunit B [Xanthomonas campestris pv. campestris str. B100] gi|21113690|gb|AAM41800.1| NADH-ubiquinone oxidoreductase NQO6 subunit [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66573246|gb|AAY48656.1| NADH-ubiquinone oxidoreductase NQO6 subunit [Xanthomonas campestris pv. campestris str. 8004] gi|167732790|emb|CAP50984.1| NADH-ubiquinone oxidoreductase NQO6 subunit [Xanthomonas campestris pv. campestris] Length = 191 Score = 244 bits (622), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 115/154 (74%), Positives = 129/154 (83%) Query: 30 SSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS 89 + + KG++ TSVD L+ WARTGS+ MTFGLACCAVEMM A R DL+R+G R S Sbjct: 36 ENPLLEKGYVTTSVDALLNWARTGSMWPMTFGLACCAVEMMHAGAARLDLDRYGVVFRPS 95 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQSDVMIVAGTL NKMA ALR+VYDQMP+P++VISMGSCANGGGYYHYSYSVVRGCDRI Sbjct: 96 PRQSDVMIVAGTLVNKMAPALRKVYDQMPDPKWVISMGSCANGGGYYHYSYSVVRGCDRI 155 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 VPVDIYVPGCPPTAEAL+YGIL LQKKI R + Sbjct: 156 VPVDIYVPGCPPTAEALVYGILQLQKKIWRTQTI 189 >gi|168050412|ref|XP_001777653.1| predicted protein [Physcomitrella patens subsp. patens] gi|162670996|gb|EDQ57555.1| predicted protein [Physcomitrella patens subsp. patens] Length = 174 Score = 244 bits (622), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 118/159 (74%), Positives = 131/159 (82%), Gaps = 5/159 (3%) Query: 30 SSEITHKG-----FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF 84 +S T KG F+++ VD L+ WARTGS+ MTFGLACCAVEMM RYDL+RFG Sbjct: 10 TSSTTSKGGPGAEFVLSKVDALMNWARTGSIWPMTFGLACCAVEMMHTGAARYDLDRFGI 69 Query: 85 APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR 144 R SPRQSD MIVAGTLTNKMA ALR+VYDQMPEPR+V+SMGSCANGGGYYHYSYSVVR Sbjct: 70 IFRPSPRQSDCMIVAGTLTNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSVVR 129 Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 GCDRIVPVDIYVPGCPPTAEAL+YG+L LQKKI R +V Sbjct: 130 GCDRIVPVDIYVPGCPPTAEALLYGLLQLQKKINRRKDV 168 >gi|58582858|ref|YP_201874.1| NADH dehydrogenase subunit B [Xanthomonas oryzae pv. oryzae KACC10331] gi|84624723|ref|YP_452095.1| NADH dehydrogenase subunit B [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|166712613|ref|ZP_02243820.1| NADH dehydrogenase subunit B [Xanthomonas oryzae pv. oryzicola BLS256] gi|58427452|gb|AAW76489.1| NADH-ubiquinone oxidoreductase NQO6 subunit [Xanthomonas oryzae pv. oryzae KACC10331] gi|84368663|dbj|BAE69821.1| NADH-ubiquinone oxidoreductase NQO6 subunit [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 191 Score = 244 bits (622), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 115/154 (74%), Positives = 129/154 (83%) Query: 30 SSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS 89 + + KG++ TSVD L+ WARTGS+ MTFGLACCAVEMM A R DL+R+G R S Sbjct: 36 ENPLLEKGYVTTSVDALLNWARTGSMWPMTFGLACCAVEMMHAGASRLDLDRYGVVFRPS 95 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQSDVMIVAGTL NKMA ALR+VYDQMP+P++VISMGSCANGGGYYHYSYSVVRGCDRI Sbjct: 96 PRQSDVMIVAGTLVNKMAPALRKVYDQMPDPKWVISMGSCANGGGYYHYSYSVVRGCDRI 155 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 VPVDIYVPGCPPTAEAL+YGIL LQKKI R + Sbjct: 156 VPVDIYVPGCPPTAEALVYGILQLQKKIWRTQTI 189 >gi|330794647|ref|XP_003285389.1| NADH dehydrogenase [Dictyostelium purpureum] gi|325084659|gb|EGC38082.1| NADH dehydrogenase [Dictyostelium purpureum] Length = 178 Score = 244 bits (622), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 112/145 (77%), Positives = 127/145 (87%) Query: 39 LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIV 98 +++ +D LV WARTGSL MTFGLACCAVEMMQ RYD++RFG PRASPRQSD +IV Sbjct: 28 VISKLDGLVNWARTGSLWPMTFGLACCAVEMMQGYAARYDMDRFGVIPRASPRQSDCIIV 87 Query: 99 AGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPG 158 AGTLTNKMA ALR+VYDQMP PRYV+SMGSCANGGGYYHYSYSVVRGCDRI+PVD+Y+PG Sbjct: 88 AGTLTNKMAPALRKVYDQMPNPRYVVSMGSCANGGGYYHYSYSVVRGCDRIIPVDVYMPG 147 Query: 159 CPPTAEALIYGILLLQKKIRRVGNV 183 CPPTAEA +YGIL LQKK+RR N+ Sbjct: 148 CPPTAEAFVYGILQLQKKMRREQNL 172 >gi|134095030|ref|YP_001100105.1| NADH dehydrogenase subunit B [Herminiimonas arsenicoxydans] gi|218527991|sp|A4G643|NUOB_HERAR RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|133738933|emb|CAL61980.1| NADH-quinone oxidoreductase subunit B (NADH dehydrogenase I subunit B) (NDH-1 subunit B) [Herminiimonas arsenicoxydans] Length = 158 Score = 244 bits (622), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 112/151 (74%), Positives = 128/151 (84%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 + ++GF+ T+ D+L+ W RTGS+ MTFGLACCAVEMM A RYD++RFG R SPRQ Sbjct: 6 VLNEGFVTTTADKLINWTRTGSMWPMTFGLACCAVEMMHAGASRYDMDRFGVVFRPSPRQ 65 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 SDVMIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPV Sbjct: 66 SDVMIVAGTLCNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPV 125 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 D+YVPGCPPTAEAL+YGI+ LQ KIRR + Sbjct: 126 DVYVPGCPPTAEALLYGIMQLQNKIRRTNTI 156 >gi|238028142|ref|YP_002912373.1| NADH dehydrogenase subunit B [Burkholderia glumae BGR1] gi|237877336|gb|ACR29669.1| NADH-quinone oxidoreductase, B subunit [Burkholderia glumae BGR1] Length = 159 Score = 244 bits (622), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 113/151 (74%), Positives = 127/151 (84%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 + +GF+ T+ D+L+ W RTGSL +TFGLACCAVEMM A RYDL+RFG R SPRQ Sbjct: 6 VLKEGFVTTTADKLINWTRTGSLWPVTFGLACCAVEMMHAGAARYDLDRFGVVFRPSPRQ 65 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 SDVMIVAGTL NKMA ALRRVYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPV Sbjct: 66 SDVMIVAGTLCNKMAPALRRVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPV 125 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 D+YVPGCPPTAEAL+YG++ LQ KIRR + Sbjct: 126 DVYVPGCPPTAEALVYGVIQLQAKIRRTSTI 156 >gi|218528065|sp|Q4UWB7|NUOB_XANC8 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|218528066|sp|B0RR99|NUOB_XANCB RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|218528067|sp|Q8P7T3|NUOB_XANCP RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B Length = 184 Score = 244 bits (622), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 115/154 (74%), Positives = 129/154 (83%) Query: 30 SSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS 89 + + KG++ TSVD L+ WARTGS+ MTFGLACCAVEMM A R DL+R+G R S Sbjct: 29 ENPLLEKGYVTTSVDALLNWARTGSMWPMTFGLACCAVEMMHAGAARLDLDRYGVVFRPS 88 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQSDVMIVAGTL NKMA ALR+VYDQMP+P++VISMGSCANGGGYYHYSYSVVRGCDRI Sbjct: 89 PRQSDVMIVAGTLVNKMAPALRKVYDQMPDPKWVISMGSCANGGGYYHYSYSVVRGCDRI 148 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 VPVDIYVPGCPPTAEAL+YGIL LQKKI R + Sbjct: 149 VPVDIYVPGCPPTAEALVYGILQLQKKIWRTQTI 182 >gi|188577695|ref|YP_001914624.1| NADH dehydrogenase subunit B [Xanthomonas oryzae pv. oryzae PXO99A] gi|238065244|sp|B2SVL8|NUOB_XANOP RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|188522147|gb|ACD60092.1| NADH-ubiquinone oxidoreductase 20 kda subunit [Xanthomonas oryzae pv. oryzae PXO99A] Length = 182 Score = 244 bits (622), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 115/154 (74%), Positives = 129/154 (83%) Query: 30 SSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS 89 + + KG++ TSVD L+ WARTGS+ MTFGLACCAVEMM A R DL+R+G R S Sbjct: 27 ENPLLEKGYVTTSVDALLNWARTGSMWPMTFGLACCAVEMMHAGASRLDLDRYGVVFRPS 86 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQSDVMIVAGTL NKMA ALR+VYDQMP+P++VISMGSCANGGGYYHYSYSVVRGCDRI Sbjct: 87 PRQSDVMIVAGTLVNKMAPALRKVYDQMPDPKWVISMGSCANGGGYYHYSYSVVRGCDRI 146 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 VPVDIYVPGCPPTAEAL+YGIL LQKKI R + Sbjct: 147 VPVDIYVPGCPPTAEALVYGILQLQKKIWRTQTI 180 >gi|78048408|ref|YP_364583.1| NADH dehydrogenase subunit B [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|294624677|ref|ZP_06703347.1| NADH dehydrogenase beta subunit [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|294666776|ref|ZP_06732010.1| NADH dehydrogenase beta subunit [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|325924676|ref|ZP_08186114.1| NADH dehydrogenase subunit B [Xanthomonas perforans 91-118] gi|123584672|sp|Q3BRN0|NUOB_XANC5 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|238065262|sp|Q8PJ41|NUOB_XANAC RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|78036838|emb|CAJ24531.1| NADH-ubiquinone oxidoreductase NQO6 subunit [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|292601033|gb|EFF45100.1| NADH dehydrogenase beta subunit [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292603437|gb|EFF46854.1| NADH dehydrogenase beta subunit [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|325544882|gb|EGD16227.1| NADH dehydrogenase subunit B [Xanthomonas perforans 91-118] Length = 184 Score = 244 bits (622), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 115/154 (74%), Positives = 129/154 (83%) Query: 30 SSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS 89 + + KG++ TSVD L+ WARTGS+ MTFGLACCAVEMM A R DL+R+G R S Sbjct: 29 ENPLLEKGYVTTSVDALLNWARTGSMWPMTFGLACCAVEMMHAGASRLDLDRYGVVFRPS 88 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQSDVMIVAGTL NKMA ALR+VYDQMP+P++VISMGSCANGGGYYHYSYSVVRGCDRI Sbjct: 89 PRQSDVMIVAGTLVNKMAPALRKVYDQMPDPKWVISMGSCANGGGYYHYSYSVVRGCDRI 148 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 VPVDIYVPGCPPTAEAL+YGIL LQKKI R + Sbjct: 149 VPVDIYVPGCPPTAEALVYGILQLQKKIWRTQTI 182 >gi|148284880|ref|YP_001248970.1| NADH dehydrogenase subunit B [Orientia tsutsugamushi str. Boryong] gi|189183819|ref|YP_001937604.1| NADH dehydrogenase subunit B [Orientia tsutsugamushi str. Ikeda] gi|218528000|sp|A5CES0|NUOB_ORITB RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|218528001|sp|B3CSG9|NUOB_ORITI RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|146740319|emb|CAM80723.1| NADH dehydrogenase I chain B [Orientia tsutsugamushi str. Boryong] gi|189180590|dbj|BAG40370.1| NADH dehydrogenase I chain B [Orientia tsutsugamushi str. Ikeda] Length = 171 Score = 244 bits (622), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 115/166 (69%), Positives = 139/166 (83%), Gaps = 1/166 (0%) Query: 20 EKVDADFSRISSE-ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78 E +D + I ++ ++++GF++ +++ LV+WART SL MTFGLACCA+EMMQ + RYD Sbjct: 3 ENTFSDTTSIYNQNLSNQGFILANLENLVSWARTRSLWPMTFGLACCAIEMMQTAGSRYD 62 Query: 79 LERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY 138 ++R+G R SPRQ+DVMIVAGTLTNKMA ALRRVYDQM EP++VISMGSCANGGGYYHY Sbjct: 63 MDRYGMLFRPSPRQADVMIVAGTLTNKMAPALRRVYDQMTEPKWVISMGSCANGGGYYHY 122 Query: 139 SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 SYSVVRGCD+IVPVDIYVPGCPPT EAL+YGIL LQKKI R VK Sbjct: 123 SYSVVRGCDKIVPVDIYVPGCPPTPEALLYGILQLQKKINRTQQVK 168 >gi|325915540|ref|ZP_08177851.1| NADH dehydrogenase subunit B [Xanthomonas vesicatoria ATCC 35937] gi|325538256|gb|EGD09941.1| NADH dehydrogenase subunit B [Xanthomonas vesicatoria ATCC 35937] Length = 182 Score = 244 bits (622), Expect = 6e-63, Method: Compositional matrix adjust. Identities = 115/154 (74%), Positives = 129/154 (83%) Query: 30 SSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS 89 + + KG++ TSVD L+ WARTGS+ MTFGLACCAVEMM A R DL+R+G R S Sbjct: 27 ENPLLEKGYVTTSVDALLNWARTGSMWPMTFGLACCAVEMMHAGASRLDLDRYGVVFRPS 86 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQSDVMIVAGTL NKMA ALR+VYDQMP+P++VISMGSCANGGGYYHYSYSVVRGCDRI Sbjct: 87 PRQSDVMIVAGTLVNKMAPALRKVYDQMPDPKWVISMGSCANGGGYYHYSYSVVRGCDRI 146 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 VPVDIYVPGCPPTAEAL+YGIL LQKKI R + Sbjct: 147 VPVDIYVPGCPPTAEALVYGILQLQKKIWRTQTI 180 >gi|300311096|ref|YP_003775188.1| NADH dehydrogenase I subunit B [Herbaspirillum seropedicae SmR1] gi|300073881|gb|ADJ63280.1| NADH dehydrogenase I (Chain B) oxidoreductase protein [Herbaspirillum seropedicae SmR1] Length = 158 Score = 244 bits (622), Expect = 6e-63, Method: Compositional matrix adjust. Identities = 111/151 (73%), Positives = 129/151 (85%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 + ++GF+ TS+D+++ W RTGSL MTFGLACCAVEMM RYDL+RFG R SPRQ Sbjct: 6 VLNEGFVTTSLDKVINWTRTGSLWPMTFGLACCAVEMMHVGASRYDLDRFGAVFRPSPRQ 65 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 SD+MIVAGTL NKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPV Sbjct: 66 SDLMIVAGTLCNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPV 125 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 D+YVPGCPPTAEAL+YG++ LQ KI+R + Sbjct: 126 DVYVPGCPPTAEALLYGVIQLQNKIKRTNTI 156 >gi|289665174|ref|ZP_06486755.1| NADH dehydrogenase subunit B [Xanthomonas campestris pv. vasculorum NCPPB702] gi|289667379|ref|ZP_06488454.1| NADH dehydrogenase subunit B [Xanthomonas campestris pv. musacearum NCPPB4381] gi|238065260|sp|Q5GXT2|NUOB_XANOR RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|238065261|sp|Q2P0V6|NUOB_XANOM RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B Length = 184 Score = 243 bits (621), Expect = 6e-63, Method: Compositional matrix adjust. Identities = 115/154 (74%), Positives = 129/154 (83%) Query: 30 SSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS 89 + + KG++ TSVD L+ WARTGS+ MTFGLACCAVEMM A R DL+R+G R S Sbjct: 29 ENPLLEKGYVTTSVDALLNWARTGSMWPMTFGLACCAVEMMHAGASRLDLDRYGVVFRPS 88 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQSDVMIVAGTL NKMA ALR+VYDQMP+P++VISMGSCANGGGYYHYSYSVVRGCDRI Sbjct: 89 PRQSDVMIVAGTLVNKMAPALRKVYDQMPDPKWVISMGSCANGGGYYHYSYSVVRGCDRI 148 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 VPVDIYVPGCPPTAEAL+YGIL LQKKI R + Sbjct: 149 VPVDIYVPGCPPTAEALVYGILQLQKKIWRTQTI 182 >gi|325921410|ref|ZP_08183267.1| NADH dehydrogenase subunit B [Xanthomonas gardneri ATCC 19865] gi|325548168|gb|EGD19165.1| NADH dehydrogenase subunit B [Xanthomonas gardneri ATCC 19865] Length = 184 Score = 243 bits (621), Expect = 6e-63, Method: Compositional matrix adjust. Identities = 115/154 (74%), Positives = 129/154 (83%) Query: 30 SSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS 89 + + KG++ TSVD L+ WARTGS+ MTFGLACCAVEMM A R DL+R+G R S Sbjct: 29 ENPLLEKGYVTTSVDALLNWARTGSMWPMTFGLACCAVEMMHAGAARLDLDRYGVVFRPS 88 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQSDVMIVAGTL NKMA ALR+VYDQMP+P++VISMGSCANGGGYYHYSYSVVRGCDRI Sbjct: 89 PRQSDVMIVAGTLVNKMAPALRKVYDQMPDPKWVISMGSCANGGGYYHYSYSVVRGCDRI 148 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 VPVDIYVPGCPPTAEAL+YGIL LQKKI R + Sbjct: 149 VPVDIYVPGCPPTAEALVYGILQLQKKIWRTQTI 182 >gi|73666917|ref|YP_302933.1| NADH dehydrogenase subunit B [Ehrlichia canis str. Jake] gi|72394058|gb|AAZ68335.1| NADH dehydrogenase subunit B [Ehrlichia canis str. Jake] Length = 185 Score = 243 bits (621), Expect = 6e-63, Method: Compositional matrix adjust. Identities = 115/150 (76%), Positives = 127/150 (84%), Gaps = 4/150 (2%) Query: 34 THKGFLVTS----VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS 89 H+GF+VT +D + WAR+ SL MTFGLACCAVEMM + RYDL+R+G RAS Sbjct: 21 NHQGFMVTQFSDLIDYISNWARSNSLWPMTFGLACCAVEMMHTAASRYDLDRYGIMFRAS 80 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQ+DVMIVAGTLTNKMA ALR+VYDQM EPRYVISMGSCANGGGYYHYSYSVVRGCDRI Sbjct: 81 PRQADVMIVAGTLTNKMAPALRKVYDQMTEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 140 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRR 179 VPVDIYVPGCPPTAEAL+YGIL LQ+KI R Sbjct: 141 VPVDIYVPGCPPTAEALLYGILCLQQKINR 170 >gi|114052144|ref|NP_001040456.1| NADH-ubiquinone oxidoreductase Fe-S protein 7 [Bombyx mori] gi|95102968|gb|ABF51425.1| NADH-ubiquinone oxidoreductase Fe-S protein 7 [Bombyx mori] Length = 210 Score = 243 bits (621), Expect = 7e-63, Method: Compositional matrix adjust. Identities = 112/145 (77%), Positives = 127/145 (87%) Query: 40 VTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVA 99 V +D L+ W R GSL MTFGLACCAVEMM + PRYD++R+G RASPRQSDVMIVA Sbjct: 61 VARLDDLLNWGRKGSLWPMTFGLACCAVEMMHIAAPRYDMDRYGVVFRASPRQSDVMIVA 120 Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGC 159 GTLTNKMA ALR+VYDQMP+PR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGC Sbjct: 121 GTLTNKMAPALRKVYDQMPDPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGC 180 Query: 160 PPTAEALIYGILLLQKKIRRVGNVK 184 PPTAEAL+YG+L LQKKI+R+ ++ Sbjct: 181 PPTAEALLYGVLQLQKKIKRMKTIQ 205 >gi|296136705|ref|YP_003643947.1| hypothetical protein Tint_2267 [Thiomonas intermedia K12] gi|294340860|emb|CAZ89255.1| NADH-quinone oxidoreductase subunit 6 (NADH dehydrogenase I chain 6) (NDH-1 subunit 6) [Thiomonas sp. 3As] gi|295796827|gb|ADG31617.1| hypothetical protein Tint_2267 [Thiomonas intermedia K12] Length = 158 Score = 243 bits (621), Expect = 7e-63, Method: Compositional matrix adjust. Identities = 112/151 (74%), Positives = 127/151 (84%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 + +GF+ TS D+L+ W RTGSL MTFGLACCAVEMM A RYDL+RFG R SPRQ Sbjct: 6 VLQEGFITTSADKLINWTRTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGIVFRPSPRQ 65 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 SD+MIVAGTL NKMA ALR+VYDQM EPR+V+SMGSCANGGGYYHYSYSVVRGCDRIVPV Sbjct: 66 SDLMIVAGTLCNKMAPALRKVYDQMAEPRWVLSMGSCANGGGYYHYSYSVVRGCDRIVPV 125 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 D+YVPGCPPTAEAL+YG++ LQ KIRR + Sbjct: 126 DVYVPGCPPTAEALLYGLIQLQNKIRRTETI 156 >gi|291613539|ref|YP_003523696.1| NADH-quinone oxidoreductase, B subunit [Sideroxydans lithotrophicus ES-1] gi|291583651|gb|ADE11309.1| NADH-quinone oxidoreductase, B subunit [Sideroxydans lithotrophicus ES-1] Length = 159 Score = 243 bits (621), Expect = 8e-63, Method: Compositional matrix adjust. Identities = 116/152 (76%), Positives = 130/152 (85%), Gaps = 1/152 (0%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APRASPR 91 + KGF+ TS D ++ + RTGSL MTFGLACCAVEMM A++PRYDL+RFG A R SPR Sbjct: 6 VLEKGFITTSADTVINYVRTGSLWPMTFGLACCAVEMMHAALPRYDLDRFGAGAFRPSPR 65 Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151 QSDVMIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVP Sbjct: 66 QSDVMIVAGTLCNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVP 125 Query: 152 VDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 VDIYVPGCPPTAEAL+YGI+ LQ KI+R + Sbjct: 126 VDIYVPGCPPTAEALLYGIIQLQNKIKRTNTI 157 >gi|195033324|ref|XP_001988662.1| GH11286 [Drosophila grimshawi] gi|193904662|gb|EDW03529.1| GH11286 [Drosophila grimshawi] Length = 209 Score = 243 bits (621), Expect = 8e-63, Method: Compositional matrix adjust. Identities = 113/147 (76%), Positives = 129/147 (87%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 + VT +D L+ W R GS+ MTFGLACCAVEMM + PRYD++RFG RASPRQ+D+MI Sbjct: 58 WTVTRLDDLLNWGRKGSIWPMTFGLACCAVEMMHIAAPRYDMDRFGVVFRASPRQTDLMI 117 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP Sbjct: 118 VAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 177 Query: 158 GCPPTAEALIYGILLLQKKIRRVGNVK 184 GCPPTAEAL+YGIL LQKKI+R+ ++ Sbjct: 178 GCPPTAEALMYGILQLQKKIKRMRTLQ 204 >gi|145256397|ref|XP_001401369.1| NADH-ubiquinone oxidoreductase subunit [Aspergillus niger CBS 513.88] gi|134058270|emb|CAK38461.1| unnamed protein product [Aspergillus niger] Length = 232 Score = 243 bits (620), Expect = 8e-63, Method: Compositional matrix adjust. Identities = 118/177 (66%), Positives = 138/177 (77%), Gaps = 2/177 (1%) Query: 4 TTVNQKIISGQSSCSLEKVDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFG 61 T + Q+ SGQ+ + KV + S E +++T++DQ+ WAR SL MTFG Sbjct: 45 TAIEQRGQSGQALTASGKVRKEVPLPSQEKKEGAMQYVLTTLDQVANWARQSSLWPMTFG 104 Query: 62 LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPR 121 LACCAVEMM S PRYD +R G RASPRQSDVMIVAGTLTNKMA ALR+VYDQMP+PR Sbjct: 105 LACCAVEMMHLSTPRYDQDRLGIIFRASPRQSDVMIVAGTLTNKMAPALRQVYDQMPDPR 164 Query: 122 YVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 +V+SMGSCANGGGYYHYSYSVVRGCDRIVPVD+YVPGCPPT+EAL+YGI LQKK+R Sbjct: 165 WVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTSEALMYGIFQLQKKMR 221 >gi|124266597|ref|YP_001020601.1| NADH dehydrogenase subunit B [Methylibium petroleiphilum PM1] gi|218527995|sp|A2SFM7|NUOB_METPP RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|124259372|gb|ABM94366.1| NADH dehydrogenase [Methylibium petroleiphilum PM1] Length = 158 Score = 243 bits (620), Expect = 8e-63, Method: Compositional matrix adjust. Identities = 113/151 (74%), Positives = 128/151 (84%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 + +GF+ TS D+L+ W++TGSL MTFGLACCAVEMM A RYD++RFG R SPRQ Sbjct: 6 VLKEGFITTSADKLINWSKTGSLWPMTFGLACCAVEMMHAGAARYDIDRFGMLFRPSPRQ 65 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 SD+MIVAGTL NKMA ALRRVYDQM EPR+V+SMGSCANGGGYYHYSYSVVRGCDRIVPV Sbjct: 66 SDLMIVAGTLCNKMAPALRRVYDQMAEPRWVLSMGSCANGGGYYHYSYSVVRGCDRIVPV 125 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 D+YVPGCPPTAEAL+YGIL LQ KIRR + Sbjct: 126 DVYVPGCPPTAEALLYGILQLQAKIRRENTI 156 >gi|325983288|ref|YP_004295690.1| NADH-quinone oxidoreductase, B subunit [Nitrosomonas sp. AL212] gi|325532807|gb|ADZ27528.1| NADH-quinone oxidoreductase, B subunit [Nitrosomonas sp. AL212] Length = 158 Score = 243 bits (620), Expect = 9e-63, Method: Compositional matrix adjust. Identities = 113/149 (75%), Positives = 125/149 (83%) Query: 35 HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSD 94 KGF+ TS+D ++ W RTGS+ MTFGLACCAVEMM+ RYDL+RFG R SPRQSD Sbjct: 8 EKGFITTSLDSIINWGRTGSMWPMTFGLACCAVEMMETGASRYDLDRFGIVFRPSPRQSD 67 Query: 95 VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154 VMIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVDI Sbjct: 68 VMIVAGTLCNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 127 Query: 155 YVPGCPPTAEALIYGILLLQKKIRRVGNV 183 YVPGCPPTAEAL+YGI+ LQ KI R + Sbjct: 128 YVPGCPPTAEALLYGIIQLQNKINRTNTI 156 >gi|239816482|ref|YP_002945392.1| NADH dehydrogenase subunit B [Variovorax paradoxus S110] gi|259514693|sp|C5CT19|NUOB_VARPS RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|239803059|gb|ACS20126.1| NADH-quinone oxidoreductase, B subunit [Variovorax paradoxus S110] Length = 159 Score = 243 bits (620), Expect = 9e-63, Method: Compositional matrix adjust. Identities = 111/151 (73%), Positives = 129/151 (85%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 + +GF+ T+ D +V WA+TGSL MTFGLACCAVEMM A RYD++RFG R SPRQ Sbjct: 6 VMKEGFVTTTYDSVVNWAKTGSLWPMTFGLACCAVEMMHAGAARYDIDRFGMLFRPSPRQ 65 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 SD+MIVAGTL NKMA ALR+VYDQMPEPR+V+SMGSCANGGGYYHYSYSVVRGCDRIVPV Sbjct: 66 SDLMIVAGTLCNKMAPALRKVYDQMPEPRWVLSMGSCANGGGYYHYSYSVVRGCDRIVPV 125 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 D+YVPGCPPTAEAL+YG++ LQ+KIRR + Sbjct: 126 DVYVPGCPPTAEALLYGVIQLQQKIRRTNTI 156 >gi|319779199|ref|YP_004130112.1| NADH-ubiquinone oxidoreductase chain B [Taylorella equigenitalis MCE9] gi|317109223|gb|ADU91969.1| NADH-ubiquinone oxidoreductase chain B [Taylorella equigenitalis MCE9] Length = 159 Score = 243 bits (620), Expect = 9e-63, Method: Compositional matrix adjust. Identities = 114/151 (75%), Positives = 129/151 (85%) Query: 29 ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88 +S +KGFLVTS D ++ W RTGS+ +TFGLACCAVEMM A RYDL++FG R Sbjct: 1 MSDTSNNKGFLVTSTDSVLHWLRTGSMWPVTFGLACCAVEMMHAGAARYDLDQFGIIFRP 60 Query: 89 SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 148 SPRQSD+MIVAGTLTNKMA ALR+VYDQM EPR+V+SMGSCANGGGYYHYSY+VVRGCDR Sbjct: 61 SPRQSDIMIVAGTLTNKMAPALRKVYDQMAEPRWVVSMGSCANGGGYYHYSYAVVRGCDR 120 Query: 149 IVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179 IVPVDIYVPGCPPTAEALIYG+L LQ K+RR Sbjct: 121 IVPVDIYVPGCPPTAEALIYGMLQLQNKMRR 151 >gi|58584500|ref|YP_198073.1| NADH dehydrogenase subunit B [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|75497991|sp|Q5GT43|NUOB_WOLTR RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|58418816|gb|AAW70831.1| NADH:ubiquinone oxidoreductase chain B [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 168 Score = 243 bits (620), Expect = 9e-63, Method: Compositional matrix adjust. Identities = 116/165 (70%), Positives = 136/165 (82%), Gaps = 8/165 (4%) Query: 23 DADFSRISSEITHKGFLVTS----VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78 + D++R E GFLVT +D ++ WAR+GSL MTFGLACCAVEMM + RYD Sbjct: 8 NDDWNRYKKE----GFLVTKFGSLIDYVINWARSGSLWPMTFGLACCAVEMMHTASSRYD 63 Query: 79 LERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY 138 L+R+G RASPRQ+DVMIVAGTLTNKMA+ALR+VYDQM +P+YV+SMGSCANGGGYYHY Sbjct: 64 LDRYGIMFRASPRQADVMIVAGTLTNKMAAALRKVYDQMADPKYVVSMGSCANGGGYYHY 123 Query: 139 SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 SYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG+L LQ KI+R N+ Sbjct: 124 SYSVVRGCDRIVPVDIYVPGCPPTAEALLYGMLCLQNKIKRTQNI 168 >gi|319794667|ref|YP_004156307.1| NADH-quinone oxidoreductase, b subunit [Variovorax paradoxus EPS] gi|315597130|gb|ADU38196.1| NADH-quinone oxidoreductase, B subunit [Variovorax paradoxus EPS] Length = 159 Score = 243 bits (620), Expect = 9e-63, Method: Compositional matrix adjust. Identities = 111/151 (73%), Positives = 129/151 (85%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 + +GF+ T+ D +V WA+TGSL MTFGLACCAVEMM A RYD++RFG R SPRQ Sbjct: 6 VLKEGFVTTTYDSVVNWAKTGSLWPMTFGLACCAVEMMHAGAARYDIDRFGMLFRPSPRQ 65 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 SD+MIVAGTL NKMA ALR+VYDQMPEPR+V+SMGSCANGGGYYHYSYSVVRGCDRIVPV Sbjct: 66 SDLMIVAGTLCNKMAPALRKVYDQMPEPRWVLSMGSCANGGGYYHYSYSVVRGCDRIVPV 125 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 D+YVPGCPPTAEAL+YG++ LQ+KIRR + Sbjct: 126 DVYVPGCPPTAEALLYGVIQLQQKIRRTNTI 156 >gi|285017793|ref|YP_003375504.1| NADH-quinone oxidoreductase chain b (nadh dehydrogenaseI chain b) (ndh-1, chain b) (nuo2) oxidoreductase [Xanthomonas albilineans GPE PC73] gi|283473011|emb|CBA15516.1| probable nadh-quinone oxidoreductase chain b (nadh dehydrogenaseI chain b) (ndh-1, chain b) (nuo2). oxidoreductase protein [Xanthomonas albilineans] Length = 184 Score = 243 bits (620), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 114/154 (74%), Positives = 129/154 (83%) Query: 30 SSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS 89 + + KG++ TSVD L+ WARTGS+ MTFGLACCAVEMM A R DL+R+G R S Sbjct: 29 ENPLLEKGYVTTSVDALLNWARTGSMWPMTFGLACCAVEMMHAGAARLDLDRYGVVFRPS 88 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQSDVMIVAGTL NKMA ALR+VYDQMP+P++VISMGSCANGGGYYHYSYSVVRGCDRI Sbjct: 89 PRQSDVMIVAGTLVNKMAPALRKVYDQMPDPKWVISMGSCANGGGYYHYSYSVVRGCDRI 148 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 VPVD+YVPGCPPTAEAL+YGIL LQKKI R + Sbjct: 149 VPVDVYVPGCPPTAEALVYGILQLQKKIWRTQTI 182 >gi|145589233|ref|YP_001155830.1| NADH-quinone oxidoreductase, B subunit [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|171463527|ref|YP_001797640.1| NADH-quinone oxidoreductase, B subunit [Polynucleobacter necessarius subsp. necessarius STIR1] gi|218528004|sp|B1XUJ9|NUOB_POLNS RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|218528005|sp|A4SXQ2|NUOB_POLSQ RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|145047639|gb|ABP34266.1| NADH dehydrogenase subunit B [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|171193065|gb|ACB44026.1| NADH-quinone oxidoreductase, B subunit [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 160 Score = 243 bits (619), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 114/151 (75%), Positives = 125/151 (82%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 + +GF+ T+ DQL+ W R GSL MTFGLACCAVEMM A RYDL+RFG R SPRQ Sbjct: 6 VLKEGFVTTTADQLINWTRNGSLWPMTFGLACCAVEMMHAGASRYDLDRFGVVFRPSPRQ 65 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 SD+MIVAGTL NKMA ALR+VYDQMPEPR+VISMGSCANGGGYYH SYSVVRGCDRIVPV Sbjct: 66 SDLMIVAGTLCNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHNSYSVVRGCDRIVPV 125 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 DIYVPGCPPTAEALIYGI+ LQ KI R + Sbjct: 126 DIYVPGCPPTAEALIYGIIQLQSKIARTSTI 156 >gi|2499328|sp|Q43844|NDUS7_SOLTU RecName: Full=NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial; AltName: Full=Complex I-20 kDa; Short=CI-20kD; Flags: Precursor gi|1235607|emb|CAA65451.1| NADH-ubiquinone oxidoreductase [Solanum tuberosum] Length = 213 Score = 243 bits (619), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 113/142 (79%), Positives = 124/142 (87%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 ++++ VD L+ WAR GS+ MTFGLACCAVEMM A RYD +RFG R SPRQSDVMI Sbjct: 62 YVISKVDDLMNWARRGSIWPMTFGLACCAVEMMHAGAARYDFDRFGIIFRPSPRQSDVMI 121 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSY+VVRGCDRIVPVDIYVP Sbjct: 122 VAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYAVVRGCDRIVPVDIYVP 181 Query: 158 GCPPTAEALIYGILLLQKKIRR 179 GCPPTAEAL+YGIL LQKKI R Sbjct: 182 GCPPTAEALLYGILQLQKKINR 203 >gi|328874905|gb|EGG23270.1| NADH-ubiquinone oxidoreductase 20 kDa subunit [Dictyostelium fasciculatum] Length = 179 Score = 243 bits (619), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 114/169 (67%), Positives = 134/169 (79%) Query: 11 ISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMM 70 ++ Q+ L K+ A + + + +++ +D LV WARTGS MTFGLACCAVEMM Sbjct: 1 MASQAGQHLSKLLASSFKAAPPSSVPEIVISKLDGLVNWARTGSFWPMTFGLACCAVEMM 60 Query: 71 QASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCA 130 RYD++RFG PRASPRQSD +IVAGTLTNKMA ALR+VYDQMP PRYVISMGSCA Sbjct: 61 HGYAARYDMDRFGVIPRASPRQSDCIIVAGTLTNKMAPALRKVYDQMPNPRYVISMGSCA 120 Query: 131 NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179 NGGGYYHYSYSVVRGCDRI+PVD+Y+PGCPPTAEA +YGIL LQKKI+R Sbjct: 121 NGGGYYHYSYSVVRGCDRIIPVDVYIPGCPPTAEAFVYGILQLQKKIQR 169 >gi|281202313|gb|EFA76518.1| NADH-ubiquinone oxidoreductase 20 kDa subunit [Polysphondylium pallidum PN500] Length = 178 Score = 243 bits (619), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 115/167 (68%), Positives = 132/167 (79%) Query: 13 GQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQA 72 Q+ L K+ A + + + +++ +D LV WARTGSL MTFGLACCAVEMM Sbjct: 2 AQAGQHLSKLLASSFKAAPPSSVPEIVISKLDGLVNWARTGSLWPMTFGLACCAVEMMHG 61 Query: 73 SMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANG 132 RYDL+RFG PRASPRQSD +IVAGTLTNKMA ALR+VYDQMP PRYVISMGSCANG Sbjct: 62 YAARYDLDRFGIIPRASPRQSDCIIVAGTLTNKMAPALRKVYDQMPLPRYVISMGSCANG 121 Query: 133 GGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179 GGYYHYSYSVVRGCDRI+PVD+Y+PGCPPTAEA +YG+L LQKKI R Sbjct: 122 GGYYHYSYSVVRGCDRIIPVDVYIPGCPPTAEAFVYGVLQLQKKINR 168 >gi|125772981|ref|XP_001357749.1| GA15185 [Drosophila pseudoobscura pseudoobscura] gi|54637481|gb|EAL26883.1| GA15185 [Drosophila pseudoobscura pseudoobscura] Length = 211 Score = 243 bits (619), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 112/147 (76%), Positives = 128/147 (87%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 + + +D L+ W R GSL MTFGLACCAVEMM + PRYD++RFG RASPRQ+DVMI Sbjct: 60 WTLARLDDLLNWGRKGSLWPMTFGLACCAVEMMHIAAPRYDMDRFGMVFRASPRQTDVMI 119 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP Sbjct: 120 VAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 179 Query: 158 GCPPTAEALIYGILLLQKKIRRVGNVK 184 GCPPTAEAL+YG+L LQKK+RR+ ++ Sbjct: 180 GCPPTAEALLYGLLQLQKKVRRMRTLQ 206 >gi|77745495|gb|ABB02646.1| NADH-ubiquinone oxidoreductase subunit-like [Solanum tuberosum] Length = 213 Score = 243 bits (619), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 113/142 (79%), Positives = 124/142 (87%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 ++++ VD L+ WAR GS+ MTFGLACCAVEMM A RYD +RFG R SPRQSDVMI Sbjct: 62 YVISKVDDLMNWARRGSIWPMTFGLACCAVEMMHAGAARYDFDRFGIIFRPSPRQSDVMI 121 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSY+VVRGCDRIVPVDIYVP Sbjct: 122 VAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYAVVRGCDRIVPVDIYVP 181 Query: 158 GCPPTAEALIYGILLLQKKIRR 179 GCPPTAEAL+YGIL LQKKI R Sbjct: 182 GCPPTAEALLYGILQLQKKINR 203 >gi|212528728|ref|XP_002144521.1| NADH-ubiquinone oxidoreductase subunit B, putative [Penicillium marneffei ATCC 18224] gi|210073919|gb|EEA28006.1| NADH-ubiquinone oxidoreductase subunit B, putative [Penicillium marneffei ATCC 18224] Length = 225 Score = 243 bits (619), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 119/180 (66%), Positives = 138/180 (76%), Gaps = 2/180 (1%) Query: 1 MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWM 58 M +T + +++ S S + KV + S E + +T++DQ+ WAR SL M Sbjct: 35 MPVTAIERQLESSSSLTASGKVRREVPLPSQEKKEGAMQYALTTLDQIANWARQSSLWPM 94 Query: 59 TFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMP 118 TFGLACCAVEMM S PRYD +R G RASPRQSDVMIVAGTLTNKMA ALR+VYDQMP Sbjct: 95 TFGLACCAVEMMHLSTPRYDQDRLGIIFRASPRQSDVMIVAGTLTNKMAPALRQVYDQMP 154 Query: 119 EPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 +PR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT+EAL+YGI LQKK+R Sbjct: 155 DPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTSEALMYGIFQLQKKMR 214 >gi|119501352|ref|XP_001267433.1| NADH-ubiquinone oxidoreductase subunit B, putative [Neosartorya fischeri NRRL 181] gi|119415598|gb|EAW25536.1| NADH-ubiquinone oxidoreductase subunit B, putative [Neosartorya fischeri NRRL 181] Length = 228 Score = 243 bits (619), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 118/177 (66%), Positives = 137/177 (77%), Gaps = 2/177 (1%) Query: 4 TTVNQKIISGQSSCSLEKVDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFG 61 T + ++ SGQ + KV + S E +++T++DQ+ WAR SL MTFG Sbjct: 41 TALERQAQSGQPLTASGKVRKEVPLPSQEKKEGAMQYVLTTLDQVANWARQSSLWPMTFG 100 Query: 62 LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPR 121 LACCAVEMM S PRYD +R G RASPRQSDVMIVAGTLTNKMA ALR+VYDQMP+PR Sbjct: 101 LACCAVEMMHLSTPRYDQDRLGIIFRASPRQSDVMIVAGTLTNKMAPALRQVYDQMPDPR 160 Query: 122 YVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 +VISMGSCANGGGYYHYSYSVVRGCDRIVPVD+YVPGCPPT+EAL+YGI LQKK+R Sbjct: 161 WVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTSEALMYGIFQLQKKMR 217 >gi|112434059|gb|ABI18374.1| NADH-quinone oxidoreductase chain B [Ehrlichia ruminantium] Length = 172 Score = 242 bits (618), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 115/153 (75%), Positives = 128/153 (83%), Gaps = 4/153 (2%) Query: 34 THKGFLVTSVDQLV----TWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS 89 H+GF+VT L+ +WAR+ SL MTFGLACCAVEMM + RYDL+R+G RAS Sbjct: 18 NHRGFMVTKFSDLINYVSSWARSNSLWPMTFGLACCAVEMMHTAASRYDLDRYGVMFRAS 77 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQ+DVMIVAGTLTNKMA ALR+VYDQM EPRYVISMGSCANGGGYYHYSYSVVRGCDRI Sbjct: 78 PRQADVMIVAGTLTNKMAPALRKVYDQMTEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 137 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182 VPVDIYVPGCPPTAEAL+YGIL LQ+KI R + Sbjct: 138 VPVDIYVPGCPPTAEALLYGILCLQQKINRTAS 170 >gi|195158809|ref|XP_002020277.1| GL13892 [Drosophila persimilis] gi|194117046|gb|EDW39089.1| GL13892 [Drosophila persimilis] Length = 205 Score = 242 bits (618), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 112/147 (76%), Positives = 128/147 (87%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 + + +D L+ W R GSL MTFGLACCAVEMM + PRYD++RFG RASPRQ+DVMI Sbjct: 54 WTLARLDDLLNWGRKGSLWPMTFGLACCAVEMMHIAAPRYDMDRFGMVFRASPRQTDVMI 113 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP Sbjct: 114 VAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 173 Query: 158 GCPPTAEALIYGILLLQKKIRRVGNVK 184 GCPPTAEAL+YG+L LQKK+RR+ ++ Sbjct: 174 GCPPTAEALLYGLLQLQKKVRRMRTLQ 200 >gi|114330926|ref|YP_747148.1| NADH dehydrogenase subunit B [Nitrosomonas eutropha C91] gi|122314158|sp|Q0AHJ9|NUOB_NITEC RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|114307940|gb|ABI59183.1| NADH dehydrogenase subunit B [Nitrosomonas eutropha C91] Length = 158 Score = 242 bits (618), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 114/148 (77%), Positives = 125/148 (84%) Query: 36 KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDV 95 KGF+ T++D L+ W RTGS+ MTFGLACCAVEMMQ RYDL+RFG R SPRQSDV Sbjct: 9 KGFVTTNLDSLINWGRTGSMWPMTFGLACCAVEMMQTGASRYDLDRFGIVFRPSPRQSDV 68 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155 MIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY Sbjct: 69 MIVAGTLCNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 128 Query: 156 VPGCPPTAEALIYGILLLQKKIRRVGNV 183 VPGCPPTAEAL+YGI+ LQ KI R + Sbjct: 129 VPGCPPTAEALLYGIIQLQNKIWRTNTI 156 >gi|70994922|ref|XP_752238.1| NADH-ubiquinone oxidoreductase subunit B [Aspergillus fumigatus Af293] gi|66849872|gb|EAL90200.1| NADH-ubiquinone oxidoreductase subunit B, putative [Aspergillus fumigatus Af293] gi|159124846|gb|EDP49963.1| NADH-ubiquinone oxidoreductase subunit B, putative [Aspergillus fumigatus A1163] Length = 223 Score = 242 bits (618), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 118/177 (66%), Positives = 136/177 (76%), Gaps = 2/177 (1%) Query: 4 TTVNQKIISGQSSCSLEKVDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFG 61 T + + SGQ + KV + S E +++T++DQ+ WAR SL MTFG Sbjct: 36 TALEHQAQSGQPLTASGKVRKEVPLPSQEKKEGAMQYVLTTLDQVANWARQSSLWPMTFG 95 Query: 62 LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPR 121 LACCAVEMM S PRYD +R G RASPRQSDVMIVAGTLTNKMA ALR+VYDQMP+PR Sbjct: 96 LACCAVEMMHLSTPRYDQDRLGIIFRASPRQSDVMIVAGTLTNKMAPALRQVYDQMPDPR 155 Query: 122 YVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 +VISMGSCANGGGYYHYSYSVVRGCDRIVPVD+YVPGCPPT+EAL+YGI LQKK+R Sbjct: 156 WVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTSEALMYGIFQLQKKMR 212 >gi|332526748|ref|ZP_08402850.1| NADH dehydrogenase subunit B [Rubrivivax benzoatilyticus JA2] gi|332111151|gb|EGJ11183.1| NADH dehydrogenase subunit B [Rubrivivax benzoatilyticus JA2] Length = 158 Score = 242 bits (618), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 111/151 (73%), Positives = 129/151 (85%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 + +GF+ TSVD+L+ W++TGSL MTFGLACCA+EMM A RYD++RFG R SPRQ Sbjct: 6 VIKEGFVTTSVDKLINWSKTGSLWPMTFGLACCAIEMMHAGAARYDMDRFGMLFRPSPRQ 65 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 SD+MIVAGTL NKMA ALR+VYDQM EPR+V+SMGSCANGGGYYHYSYSVVRGCDRIVPV Sbjct: 66 SDLMIVAGTLCNKMAPALRKVYDQMAEPRWVLSMGSCANGGGYYHYSYSVVRGCDRIVPV 125 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 D+YVPGCPPTAEAL+YGI+ LQ KIRR + Sbjct: 126 DVYVPGCPPTAEALLYGIMQLQSKIRRENTI 156 >gi|115400845|ref|XP_001216011.1| NADH-ubiquinone oxidoreductase 19.3 kDa subunit, mitochondrial precursor [Aspergillus terreus NIH2624] gi|114191677|gb|EAU33377.1| NADH-ubiquinone oxidoreductase 19.3 kDa subunit, mitochondrial precursor [Aspergillus terreus NIH2624] Length = 307 Score = 242 bits (618), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 117/179 (65%), Positives = 138/179 (77%), Gaps = 2/179 (1%) Query: 4 TTVNQKIISGQSSCSLEKVDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFG 61 T + ++ +GQS + KV + S E +++T++DQ+ WAR SL MTFG Sbjct: 120 TALERQGQTGQSLTASGKVRKEVPLASQEKKEGAMQYVLTTLDQVANWARQSSLWPMTFG 179 Query: 62 LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPR 121 LACCAVEMM S PRYD +R G RASPRQSDVMIVAGTLTNKMA ALR+VYDQMP+PR Sbjct: 180 LACCAVEMMHLSTPRYDQDRLGIIFRASPRQSDVMIVAGTLTNKMAPALRQVYDQMPDPR 239 Query: 122 YVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 +V+SMGSCANGGGYYHYSYSVVRGCDRIVPVD+YVPGCPPT+EAL+YGI LQKK+R Sbjct: 240 WVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTSEALMYGIFQLQKKMRHT 298 >gi|190571252|ref|YP_001975610.1| NADH dehydrogenase I, B subunit [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|213018650|ref|ZP_03334458.1| NADH dehydrogenase I, B subunit [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|218528013|sp|B3CM42|NUOB_WOLPP RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|190357524|emb|CAQ54961.1| NADH dehydrogenase I, B subunit [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|212995601|gb|EEB56241.1| NADH dehydrogenase I, B subunit [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 167 Score = 242 bits (617), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 114/165 (69%), Positives = 136/165 (82%), Gaps = 8/165 (4%) Query: 23 DADFSRISSEITHKGFLVTS----VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78 + D++R E GFL+T +D ++ WAR+GSL MTFGLACCAVEMM + RYD Sbjct: 7 NGDWNRYKKE----GFLITKFGDLIDYIMNWARSGSLWPMTFGLACCAVEMMHTASSRYD 62 Query: 79 LERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY 138 L+R+G RASPRQ+DVMIVAGTLTNKMA+ALR+VYDQM +P+YV+SMGSCANGGGYYHY Sbjct: 63 LDRYGIIFRASPRQADVMIVAGTLTNKMAAALRKVYDQMADPKYVVSMGSCANGGGYYHY 122 Query: 139 SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 SYSVVRGCDRIVPVD+YVPGCPPTAEAL+YG+L LQ KI+R N+ Sbjct: 123 SYSVVRGCDRIVPVDVYVPGCPPTAEALLYGMLCLQNKIKRTKNI 167 >gi|224824822|ref|ZP_03697929.1| NADH-quinone oxidoreductase, B subunit [Lutiella nitroferrum 2002] gi|224603315|gb|EEG09491.1| NADH-quinone oxidoreductase, B subunit [Lutiella nitroferrum 2002] Length = 158 Score = 242 bits (617), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 113/151 (74%), Positives = 127/151 (84%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 I KGF+ T+ D+L+ + RTGSL MTFGLACCAVEMM A RYDL+RFG R SPRQ Sbjct: 6 ILEKGFITTTADKLINYTRTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGVVFRPSPRQ 65 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 SD+MIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPV Sbjct: 66 SDLMIVAGTLCNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPV 125 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 D+YVPGCPPTAEAL+YGI+ LQ KI+R + Sbjct: 126 DVYVPGCPPTAEALLYGIIQLQNKIKRTNTI 156 >gi|116782796|gb|ABK22662.1| unknown [Picea sitchensis] Length = 205 Score = 242 bits (617), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 112/142 (78%), Positives = 123/142 (86%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 ++++ +D LV WAR GS+ MTFGLACCAVEMM RYDL+RFG R SPRQSD MI Sbjct: 54 YVISKIDALVNWARKGSIWPMTFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDCMI 113 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP Sbjct: 114 VAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 173 Query: 158 GCPPTAEALIYGILLLQKKIRR 179 GCPPTAEAL+YG+L LQKKI R Sbjct: 174 GCPPTAEALLYGLLQLQKKIHR 195 >gi|121998543|ref|YP_001003330.1| NADH-quinone oxidoreductase subunit B [Halorhodospira halophila SL1] gi|238065156|sp|A1WXW6|NUOB_HALHL RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|121589948|gb|ABM62528.1| NADH dehydrogenase subunit B [Halorhodospira halophila SL1] Length = 158 Score = 242 bits (617), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 114/151 (75%), Positives = 126/151 (83%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 I +G++ TS D+L+ WARTGSL MTFGLACCAVEMM + RYD++R G R SPRQ Sbjct: 6 ILERGYVTTSADKLINWARTGSLWPMTFGLACCAVEMMHTAAGRYDMDRNGLIFRPSPRQ 65 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 SDVMIVAGTL NKMA ALR+VYDQMPEP++VISMGSCANGGGYYHYSYSV RGCDRIVPV Sbjct: 66 SDVMIVAGTLCNKMAPALRKVYDQMPEPKWVISMGSCANGGGYYHYSYSVTRGCDRIVPV 125 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 DIYVPGCPPTAEAL YGIL LQ KIRR + Sbjct: 126 DIYVPGCPPTAEALYYGILQLQNKIRRTNTI 156 >gi|169774064|ref|XP_001821500.1| NADH-ubiquinone oxidoreductase subunit [Aspergillus oryzae RIB40] gi|238508860|ref|XP_002385611.1| NADH-ubiquinone oxidoreductase subunit B, putative [Aspergillus flavus NRRL3357] gi|83769362|dbj|BAE59498.1| unnamed protein product [Aspergillus oryzae] gi|220688358|gb|EED44712.1| NADH-ubiquinone oxidoreductase subunit B, putative [Aspergillus flavus NRRL3357] Length = 228 Score = 242 bits (617), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 117/179 (65%), Positives = 136/179 (75%), Gaps = 2/179 (1%) Query: 4 TTVNQKIISGQSSCSLEKVDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFG 61 T + K SGQ + K+ + S E +++T++DQ+ WAR SL MTFG Sbjct: 41 TALEHKGHSGQPLTASGKIRKEVPLPSQEKKEGAMQYVLTTLDQVANWARQSSLWPMTFG 100 Query: 62 LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPR 121 LACCAVEMM S PRYD +R G RASPRQSDVMIVAGTLTNKMA ALR+VYDQMP+PR Sbjct: 101 LACCAVEMMHLSTPRYDQDRLGIIFRASPRQSDVMIVAGTLTNKMAPALRQVYDQMPDPR 160 Query: 122 YVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 +V+SMGSCANGGGYYHYSYSVVRGCDRIVPVD+YVPGCPPT+EAL+YGI LQKK+R Sbjct: 161 WVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTSEALMYGIFQLQKKMRHT 219 >gi|242088593|ref|XP_002440129.1| hypothetical protein SORBIDRAFT_09g026580 [Sorghum bicolor] gi|241945414|gb|EES18559.1| hypothetical protein SORBIDRAFT_09g026580 [Sorghum bicolor] Length = 202 Score = 242 bits (617), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 115/142 (80%), Positives = 123/142 (86%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 F+V+ VD L+ WAR GS+ MTFGLACCAVEMM A RYD +RFG R SPRQSD MI Sbjct: 51 FVVSKVDDLMNWARRGSIWPMTFGLACCAVEMMHAGASRYDFDRFGLIFRPSPRQSDCMI 110 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGTLTNKMA ALRRVYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP Sbjct: 111 VAGTLTNKMAPALRRVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 170 Query: 158 GCPPTAEALIYGILLLQKKIRR 179 GCPPTAEAL+YG+L LQKKI R Sbjct: 171 GCPPTAEALLYGVLQLQKKINR 192 >gi|226939457|ref|YP_002794530.1| NuoB2 [Laribacter hongkongensis HLHK9] gi|254767794|sp|C1DCA4|NUOB_LARHH RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|226714383|gb|ACO73521.1| NuoB2 [Laribacter hongkongensis HLHK9] Length = 158 Score = 242 bits (617), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 112/147 (76%), Positives = 126/147 (85%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 + KGF+ TS D+++ W RTGSL MTFGLACCAVEMM A RYDL+RFG R SPRQ Sbjct: 6 VLEKGFITTSADKVLNWTRTGSLWPMTFGLACCAVEMMHAGASRYDLDRFGIVFRPSPRQ 65 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 SD+MIVAGTL NKMA ALR+VYDQM EPR+V+SMGSCANGGGYYHYSYSVVRGCDRIVPV Sbjct: 66 SDLMIVAGTLCNKMAPALRKVYDQMAEPRWVLSMGSCANGGGYYHYSYSVVRGCDRIVPV 125 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179 D+YVPGCPPTAEAL+YGI+ LQ KI+R Sbjct: 126 DVYVPGCPPTAEALLYGIIQLQNKIKR 152 >gi|160871863|ref|ZP_02061995.1| NADH-quinone oxidoreductase chain b (nadh dehydrogenasei, chain b) (ndh-1, chain b) [Rickettsiella grylli] gi|159120662|gb|EDP46000.1| NADH-quinone oxidoreductase chain b (nadh dehydrogenasei, chain b) (ndh-1, chain b) [Rickettsiella grylli] Length = 160 Score = 242 bits (617), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 111/151 (73%), Positives = 129/151 (85%) Query: 29 ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88 I S + +GF TS D+L+ WAR+GSL M+FGLACCAVEMM ++ RYDL+RFG R Sbjct: 3 IESLLQQQGFFTTSFDKLLAWARSGSLWPMSFGLACCAVEMMHSAASRYDLDRFGVVFRP 62 Query: 89 SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 148 SPRQSDVMIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHY+YSVVRGCDR Sbjct: 63 SPRQSDVMIVAGTLCNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYAYSVVRGCDR 122 Query: 149 IVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179 IVPVD+YVPGCPPTAEAL+YG++ LQ KI++ Sbjct: 123 IVPVDVYVPGCPPTAEALVYGVIQLQNKIKK 153 >gi|303316328|ref|XP_003068166.1| NADH-ubiquinone oxidoreductase, putative [Coccidioides posadasii C735 delta SOWgp] gi|240107847|gb|EER26021.1| NADH-ubiquinone oxidoreductase, putative [Coccidioides posadasii C735 delta SOWgp] gi|320037899|gb|EFW19835.1| NADH-ubiquinone oxidoreductase 20 kDa subunit [Coccidioides posadasii str. Silveira] Length = 227 Score = 242 bits (617), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 118/170 (69%), Positives = 133/170 (78%), Gaps = 3/170 (1%) Query: 14 QSSCSLEKVDADFSRISSEITHKG---FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMM 70 QSS + K D + S+ +G F +T++DQ+ WAR SL MTFGLACCAVEMM Sbjct: 49 QSSMTQTKKDRREVPLPSQQKKEGAMQFALTTLDQVANWARQSSLWPMTFGLACCAVEMM 108 Query: 71 QASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCA 130 S PRYD +R G RASPRQSDVMIVAGTLTNKMA ALR+VYDQMP+PR+VISMGSCA Sbjct: 109 HLSTPRYDQDRLGIIFRASPRQSDVMIVAGTLTNKMAPALRQVYDQMPDPRWVISMGSCA 168 Query: 131 NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 NGGGYYHYSYSV RGCDRIVPVDIYVPGCPPT+EAL+YGI LQKK+R Sbjct: 169 NGGGYYHYSYSVTRGCDRIVPVDIYVPGCPPTSEALMYGIFQLQKKMRHT 218 >gi|195385751|ref|XP_002051568.1| GJ16291 [Drosophila virilis] gi|194148025|gb|EDW63723.1| GJ16291 [Drosophila virilis] Length = 209 Score = 242 bits (617), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 112/145 (77%), Positives = 127/145 (87%) Query: 40 VTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVA 99 VT +D L+ W R GSL MTFGLACCAVEMM + PRYD++RFG RASPRQ+DV+IVA Sbjct: 60 VTRLDDLLNWGRKGSLWPMTFGLACCAVEMMHIAAPRYDMDRFGVVFRASPRQTDVIIVA 119 Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGC 159 GTLTNKMA ALR++YDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGC Sbjct: 120 GTLTNKMAPALRKIYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGC 179 Query: 160 PPTAEALIYGILLLQKKIRRVGNVK 184 PPTAEAL+Y IL LQKKI+R+ ++ Sbjct: 180 PPTAEALLYAILQLQKKIKRMRTLQ 204 >gi|77166022|ref|YP_344547.1| NADH dehydrogenase subunit B [Nitrosococcus oceani ATCC 19707] gi|254436391|ref|ZP_05049897.1| NADH-quinone oxidoreductase, B subunit subfamily [Nitrosococcus oceani AFC27] gi|300113266|ref|YP_003759841.1| NADH-quinone oxidoreductase subunit B [Nitrosococcus watsonii C-113] gi|123593538|sp|Q3J829|NUOB2_NITOC RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName: Full=NADH dehydrogenase I subunit B 2; AltName: Full=NDH-1 subunit B 2 gi|76884336|gb|ABA59017.1| NADH dehydrogenase subunit B [Nitrosococcus oceani ATCC 19707] gi|207088081|gb|EDZ65354.1| NADH-quinone oxidoreductase, B subunit subfamily [Nitrosococcus oceani AFC27] gi|299539203|gb|ADJ27520.1| NADH-quinone oxidoreductase, B subunit [Nitrosococcus watsonii C-113] Length = 158 Score = 242 bits (617), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 113/147 (76%), Positives = 126/147 (85%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 + +G + T+ D+L+ WARTGSL MTFGLACCAVEMM A RYD++RFG R SPRQ Sbjct: 6 VLERGVVTTTADKLINWARTGSLWPMTFGLACCAVEMMHAGASRYDMDRFGVIFRPSPRQ 65 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 SDVMIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPV Sbjct: 66 SDVMIVAGTLVNKMAPALRKVYDQMSEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPV 125 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179 DIYVPGCPPTAEAL+YGI+ LQ KI+R Sbjct: 126 DIYVPGCPPTAEALLYGIIQLQNKIKR 152 >gi|1171866|sp|P42027|NDUS7_BRAOL RecName: Full=NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial; AltName: Full=Complex I-20kD; Short=CI-20kD; Flags: Precursor gi|562282|emb|CAA57725.1| PSST subunit of NADH: ubiquinone oxidoreductase [Brassica oleracea] Length = 215 Score = 242 bits (617), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 113/142 (79%), Positives = 123/142 (86%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 F+++ VD L+ WAR GS+ MTFGLACCAVEMM RYDL+RFG R SPRQSD MI Sbjct: 64 FVISKVDDLMNWARRGSIWPMTFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDCMI 123 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP Sbjct: 124 VAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 183 Query: 158 GCPPTAEALIYGILLLQKKIRR 179 GCPPTAEAL+YG+L LQKKI R Sbjct: 184 GCPPTAEALLYGLLQLQKKINR 205 >gi|195626816|gb|ACG35238.1| NADH-ubiquinone oxidoreductase 20 kDa subunit [Zea mays] Length = 200 Score = 242 bits (617), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 114/142 (80%), Positives = 123/142 (86%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 F+V+ VD L+ WAR GS+ MTFGLACCAVEMM A RYD +RFG R SPRQSD MI Sbjct: 49 FVVSKVDDLMNWARKGSIWPMTFGLACCAVEMMHAGASRYDFDRFGVIFRPSPRQSDCMI 108 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP Sbjct: 109 VAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 168 Query: 158 GCPPTAEALIYGILLLQKKIRR 179 GCPPTAEAL+YG+L LQKKI R Sbjct: 169 GCPPTAEALLYGVLQLQKKINR 190 >gi|212721050|ref|NP_001131270.1| hypothetical protein LOC100192583 [Zea mays] gi|194691040|gb|ACF79604.1| unknown [Zea mays] gi|195641534|gb|ACG40235.1| NADH-ubiquinone oxidoreductase 20 kDa subunit [Zea mays] Length = 202 Score = 242 bits (617), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 114/142 (80%), Positives = 123/142 (86%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 F+V+ VD L+ WAR GS+ MTFGLACCAVEMM A RYD +RFG R SPRQSD MI Sbjct: 51 FVVSKVDDLMNWARKGSIWPMTFGLACCAVEMMHAGASRYDFDRFGVIFRPSPRQSDCMI 110 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP Sbjct: 111 VAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 170 Query: 158 GCPPTAEALIYGILLLQKKIRR 179 GCPPTAEAL+YG+L LQKKI R Sbjct: 171 GCPPTAEALLYGVLQLQKKINR 192 >gi|332285016|ref|YP_004416927.1| NADH dehydrogenase subunit B [Pusillimonas sp. T7-7] gi|330428969|gb|AEC20303.1| NADH dehydrogenase subunit B [Pusillimonas sp. T7-7] Length = 158 Score = 242 bits (617), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 111/151 (73%), Positives = 127/151 (84%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 I +GF+ TS D+ + WA+TGSL MTFGLACCAVEMM A RYDL++FG R SPRQ Sbjct: 6 IMKEGFITTSADKFLNWAKTGSLWPMTFGLACCAVEMMHAGAARYDLDQFGIIFRPSPRQ 65 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 SD+MIVAGTL NKMA ALR+VYDQMPEPR+V+SMGSCANGGGYYHYSYSVVRGCDRIVPV Sbjct: 66 SDLMIVAGTLCNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIVPV 125 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 D+YVPGCPPTAEAL+YG+L +Q KIR + Sbjct: 126 DVYVPGCPPTAEALVYGLLQMQNKIRLTNTI 156 >gi|226499630|ref|NP_001151765.1| LOC100285400 [Zea mays] gi|194708402|gb|ACF88285.1| unknown [Zea mays] gi|195621542|gb|ACG32601.1| NADH-ubiquinone oxidoreductase 20 kDa subunit [Zea mays] gi|195649579|gb|ACG44257.1| NADH-ubiquinone oxidoreductase 20 kDa subunit [Zea mays] Length = 200 Score = 242 bits (617), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 114/142 (80%), Positives = 123/142 (86%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 F+V+ VD L+ WAR GS+ MTFGLACCAVEMM A RYD +RFG R SPRQSD MI Sbjct: 49 FVVSKVDDLMNWARKGSIWPMTFGLACCAVEMMHAGASRYDFDRFGVIFRPSPRQSDCMI 108 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP Sbjct: 109 VAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 168 Query: 158 GCPPTAEALIYGILLLQKKIRR 179 GCPPTAEAL+YG+L LQKKI R Sbjct: 169 GCPPTAEALLYGVLQLQKKINR 190 >gi|34496397|ref|NP_900612.1| NADH dehydrogenase subunit B [Chromobacterium violaceum ATCC 12472] gi|81656636|sp|Q7NZI0|NUOB1_CHRVO RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName: Full=NADH dehydrogenase I subunit B 1; AltName: Full=NDH-1 subunit B 1 gi|34102250|gb|AAQ58616.1| NADH-ubiquinone oxidoreductase, chain B [Chromobacterium violaceum ATCC 12472] Length = 158 Score = 242 bits (617), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 113/151 (74%), Positives = 127/151 (84%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 I KGF+ T+ D+L+ + RTGSL MTFGLACCAVEMM A RYDL+RFG R SPRQ Sbjct: 6 ILEKGFVTTTADKLINYTRTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGVVFRPSPRQ 65 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 SD+MIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPV Sbjct: 66 SDLMIVAGTLCNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPV 125 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 D+YVPGCPPTAEAL+YGI+ LQ KI+R + Sbjct: 126 DVYVPGCPPTAEALLYGIIQLQNKIKRTNTI 156 >gi|6007781|gb|AAF01037.1| NADH ubiquinone oxidoreductase PSST subunit [Lupinus luteus] Length = 213 Score = 242 bits (617), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 113/142 (79%), Positives = 123/142 (86%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 F+++ VD L+ WAR GS+ MTFGLACCAVEMM RYDL+RFG R SPRQSD MI Sbjct: 62 FVISKVDDLMNWARRGSIWPMTFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDCMI 121 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP Sbjct: 122 VAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 181 Query: 158 GCPPTAEALIYGILLLQKKIRR 179 GCPPTAEAL+YG+L LQKKI R Sbjct: 182 GCPPTAEALLYGLLQLQKKINR 203 >gi|225429464|ref|XP_002277483.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 209 Score = 241 bits (616), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 112/142 (78%), Positives = 123/142 (86%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 F+++ VD L+ WAR GS+ MTFGLACCAVEMM RYDL+RFG R SPRQSD MI Sbjct: 58 FVISKVDDLLNWARRGSIWPMTFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDCMI 117 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGTLTNKMA ALR+VYDQMPEPR+V+SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP Sbjct: 118 VAGTLTNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 177 Query: 158 GCPPTAEALIYGILLLQKKIRR 179 GCPPTAEAL+YG+L LQKKI R Sbjct: 178 GCPPTAEALLYGLLQLQKKINR 199 >gi|242058541|ref|XP_002458416.1| hypothetical protein SORBIDRAFT_03g033090 [Sorghum bicolor] gi|241930391|gb|EES03536.1| hypothetical protein SORBIDRAFT_03g033090 [Sorghum bicolor] Length = 200 Score = 241 bits (616), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 114/142 (80%), Positives = 123/142 (86%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 F+V+ VD L+ WAR GS+ MTFGLACCAVEMM A RYD +RFG R SPRQSD MI Sbjct: 49 FVVSKVDDLMNWARKGSIWPMTFGLACCAVEMMHAGASRYDFDRFGVIFRPSPRQSDCMI 108 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP Sbjct: 109 VAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 168 Query: 158 GCPPTAEALIYGILLLQKKIRR 179 GCPPTAEAL+YG+L LQKKI R Sbjct: 169 GCPPTAEALLYGVLQLQKKINR 190 >gi|171058186|ref|YP_001790535.1| NADH dehydrogenase subunit B [Leptothrix cholodnii SP-6] gi|218527994|sp|B1Y828|NUOB_LEPCP RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|170775631|gb|ACB33770.1| NADH-quinone oxidoreductase, B subunit [Leptothrix cholodnii SP-6] Length = 158 Score = 241 bits (616), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 112/151 (74%), Positives = 128/151 (84%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 + +GF+ TSVD L+ W++TGSL MTFGLACCAVEMM A RYD++RFG R SPRQ Sbjct: 6 VLKEGFVTTSVDTLINWSKTGSLWPMTFGLACCAVEMMHAGASRYDIDRFGMLFRPSPRQ 65 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 SD+MIVAGTL NKMA ALR+VYDQM EPR+V+SMGSCANGGGYYHYSYSVVRGCDR+VPV Sbjct: 66 SDLMIVAGTLCNKMAPALRKVYDQMAEPRWVLSMGSCANGGGYYHYSYSVVRGCDRVVPV 125 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 D+YVPGCPPTAEAL+YGIL LQ KIRR + Sbjct: 126 DVYVPGCPPTAEALLYGILQLQAKIRRENTI 156 >gi|147818797|emb|CAN67285.1| hypothetical protein VITISV_021597 [Vitis vinifera] Length = 209 Score = 241 bits (616), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 112/142 (78%), Positives = 123/142 (86%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 F+++ VD L+ WAR GS+ MTFGLACCAVEMM RYDL+RFG R SPRQSD MI Sbjct: 58 FVISKVDDLLNWARRGSIWPMTFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDCMI 117 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGTLTNKMA ALR+VYDQMPEPR+V+SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP Sbjct: 118 VAGTLTNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 177 Query: 158 GCPPTAEALIYGILLLQKKIRR 179 GCPPTAEAL+YG+L LQKKI R Sbjct: 178 GCPPTAEALLYGLLQLQKKINR 199 >gi|217970157|ref|YP_002355391.1| NADH dehydrogenase subunit B [Thauera sp. MZ1T] gi|217507484|gb|ACK54495.1| NADH-quinone oxidoreductase, B subunit [Thauera sp. MZ1T] Length = 158 Score = 241 bits (616), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 113/151 (74%), Positives = 127/151 (84%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 + +GF+ TS+D ++ W RTGSL MTFGLACCAVEM+ A RYDL+RFG R SPRQ Sbjct: 6 VFREGFVTTSLDAVINWTRTGSLWPMTFGLACCAVEMIHAGCSRYDLDRFGVVFRPSPRQ 65 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 SD+MIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPV Sbjct: 66 SDLMIVAGTLCNKMAPALRKVYDQMSEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPV 125 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 D+YVPGCPPTAEALIYGIL LQ KI+R + Sbjct: 126 DVYVPGCPPTAEALIYGILQLQNKIKRTNTI 156 >gi|113170492|ref|YP_717283.1| ndhK [Ostreococcus tauri] gi|112806899|emb|CAL36405.1| unnamed protein product [Ostreococcus tauri] Length = 166 Score = 241 bits (616), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 113/142 (79%), Positives = 124/142 (87%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 ++++ VD L+ WAR GSL MTFGLACCAVEMM RYDL+RFG R SPRQSDVMI Sbjct: 15 YIISKVDGLINWARQGSLWPMTFGLACCAVEMMHTGAARYDLDRFGMIFRPSPRQSDVMI 74 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP Sbjct: 75 VAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 134 Query: 158 GCPPTAEALIYGILLLQKKIRR 179 GCPPTAEAL+YG+L LQKKI + Sbjct: 135 GCPPTAEALLYGLLQLQKKISQ 156 >gi|195429519|ref|XP_002062806.1| GK19502 [Drosophila willistoni] gi|194158891|gb|EDW73792.1| GK19502 [Drosophila willistoni] Length = 213 Score = 241 bits (616), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 111/151 (73%), Positives = 129/151 (85%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93 T + V +D L+ W R GSL MTFGLACCAVEMM + PRYD++RFG RASPRQ+ Sbjct: 58 TWGEWTVARLDDLINWGRKGSLWPMTFGLACCAVEMMHIAAPRYDMDRFGVVFRASPRQT 117 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD 153 DV+IVAGTLTNKMA ALR++YDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRI+PVD Sbjct: 118 DVIIVAGTLTNKMAPALRKIYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIIPVD 177 Query: 154 IYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 IYVPGCPPTAEAL+YGIL LQKK++R+ ++ Sbjct: 178 IYVPGCPPTAEALMYGILQLQKKVKRMKTLQ 208 >gi|163855988|ref|YP_001630286.1| NADH dehydrogenase subunit B [Bordetella petrii DSM 12804] gi|163259716|emb|CAP42017.1| NADH-ubiquinone oxidoreductase, 20 kDa subunit, chain B [Bordetella petrii] Length = 178 Score = 241 bits (615), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 110/151 (72%), Positives = 127/151 (84%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 I +GF+ TS D+ + WA+TGS+ MTFGLACCAVEMM A RYDL++FG R SPRQ Sbjct: 26 ILKQGFITTSADKFLNWAKTGSMWPMTFGLACCAVEMMHAGAARYDLDQFGIIFRPSPRQ 85 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 SD+MIVAGTL NKMA ALR+VYDQMPEPR+V+SMGSCANGGGYYHYSYSVVRGCDRIVPV Sbjct: 86 SDLMIVAGTLCNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIVPV 145 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 D+YVPGCPPTAEAL+YG+L +Q KIR + Sbjct: 146 DVYVPGCPPTAEALVYGLLQMQNKIRLTNTI 176 >gi|226372608|gb|ACO51929.1| NADH dehydrogenase iron-sulfur protein 7, mitochondrial precursor [Rana catesbeiana] Length = 217 Score = 241 bits (615), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 123/172 (71%), Positives = 138/172 (80%), Gaps = 3/172 (1%) Query: 4 TTVNQKIISGQSSCSLEKVDADFSRISSEITHKG-FLVTSVDQLVTWARTGSLMWMTFGL 62 T N+ IS +S +K A + SS + KG F+VT +D LV+WAR SL MTFGL Sbjct: 33 TADNENSIS--ASLVRQKSGAVPATKSSVPSGKGEFIVTKLDDLVSWARRSSLWPMTFGL 90 Query: 63 ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122 ACCAVEMM + PRYD++RFG RASPRQ+DVMIVAGTLTNKMA ALR+VYDQMPEPRY Sbjct: 91 ACCAVEMMHMAAPRYDMDRFGVVFRASPRQADVMIVAGTLTNKMAPALRKVYDQMPEPRY 150 Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQ 174 V+SMGSCANGGGYYHYSYSVVRGCD IVPVDIYVPGCPPTAEAL+YGIL LQ Sbjct: 151 VVSMGSCANGGGYYHYSYSVVRGCDGIVPVDIYVPGCPPTAEALLYGILQLQ 202 >gi|121593378|ref|YP_985274.1| NADH dehydrogenase subunit B [Acidovorax sp. JS42] gi|222110087|ref|YP_002552351.1| NADH dehydrogenase subunit b [Acidovorax ebreus TPSY] gi|218527972|sp|A1W4M3|NUOB_ACISJ RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|238065124|sp|B9MEL5|NUOB_DIAST RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|120605458|gb|ABM41198.1| NADH dehydrogenase subunit B [Acidovorax sp. JS42] gi|221729531|gb|ACM32351.1| NADH-quinone oxidoreductase, B subunit [Acidovorax ebreus TPSY] Length = 159 Score = 241 bits (615), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 116/152 (76%), Positives = 129/152 (84%), Gaps = 1/152 (0%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPR 91 + +GF+ TS D +V WA+TGSL MTFGLACCAVEMM A+ RYDL RFG RASPR Sbjct: 5 VMKEGFITTSYDSVVNWAKTGSLWPMTFGLACCAVEMMHAAAARYDLGRFGAEVFRASPR 64 Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151 QSD+MIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVP Sbjct: 65 QSDLMIVAGTLCNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVP 124 Query: 152 VDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 VD+YVPGCPPTAEALIYGI+ LQ+KIRR + Sbjct: 125 VDVYVPGCPPTAEALIYGIIQLQQKIRRTHTI 156 >gi|112434037|gb|ABI18363.1| NADH-quinone oxidoreductase chain B [Ehrlichia ruminantium] Length = 171 Score = 241 bits (615), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 114/152 (75%), Positives = 128/152 (84%), Gaps = 4/152 (2%) Query: 34 THKGFLVTSVDQLVT----WARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS 89 H+GF+VT + L++ WAR+ SL MTFGLACCAVEMM + +YDL+R+G RAS Sbjct: 18 NHRGFMVTKLSDLMSYVSSWARSNSLWPMTFGLACCAVEMMHTAASKYDLDRYGIMFRAS 77 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQ+DVMIVAGTLTNKMA ALR+VYDQM EPRYVISMGSCANGGGYYHYSYSVVRGCDRI Sbjct: 78 PRQADVMIVAGTLTNKMAPALRKVYDQMTEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 137 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181 VPVDIYVPGCPPTAEAL+YGIL LQ+KI R Sbjct: 138 VPVDIYVPGCPPTAEALLYGILCLQQKINRTA 169 >gi|57239036|ref|YP_180172.1| NADH dehydrogenase subunit B [Ehrlichia ruminantium str. Welgevonden] gi|58578978|ref|YP_197190.1| NADH dehydrogenase subunit B [Ehrlichia ruminantium str. Welgevonden] gi|58617036|ref|YP_196235.1| NADH dehydrogenase subunit B [Ehrlichia ruminantium str. Gardel] gi|75432798|sp|Q5FHF7|NUOB_EHRRG RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|81557325|sp|Q5HBM2|NUOB_EHRRW RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|57161115|emb|CAH58026.1| NADH-quinone oxidoreductase chain B [Ehrlichia ruminantium str. Welgevonden] gi|58416648|emb|CAI27761.1| NADH-ubiquinone oxidoreductase chain B [Ehrlichia ruminantium str. Gardel] gi|58417604|emb|CAI26808.1| NADH-ubiquinone oxidoreductase chain B [Ehrlichia ruminantium str. Welgevonden] gi|112434039|gb|ABI18364.1| NADH-quinone oxidoreductase chain B [Ehrlichia ruminantium] gi|112434041|gb|ABI18365.1| NADH-quinone oxidoreductase chain B [Ehrlichia ruminantium] gi|112434043|gb|ABI18366.1| NADH-quinone oxidoreductase chain B [Ehrlichia ruminantium] gi|112434045|gb|ABI18367.1| NADH-quinone oxidoreductase chain B [Ehrlichia ruminantium] gi|112434047|gb|ABI18368.1| NADH-quinone oxidoreductase chain B [Ehrlichia ruminantium] gi|112434049|gb|ABI18369.1| NADH-quinone oxidoreductase chain B [Ehrlichia ruminantium] gi|112434051|gb|ABI18370.1| NADH-quinone oxidoreductase chain B [Ehrlichia ruminantium] gi|112434053|gb|ABI18371.1| NADH-quinone oxidoreductase chain B [Ehrlichia ruminantium] gi|112434055|gb|ABI18372.1| NADH-quinone oxidoreductase chain B [Ehrlichia ruminantium] gi|112434057|gb|ABI18373.1| NADH-quinone oxidoreductase chain B [Ehrlichia ruminantium] Length = 172 Score = 241 bits (615), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 114/152 (75%), Positives = 128/152 (84%), Gaps = 4/152 (2%) Query: 34 THKGFLVTSVDQLVT----WARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS 89 H+GF+VT + L++ WAR+ SL MTFGLACCAVEMM + +YDL+R+G RAS Sbjct: 18 NHRGFMVTKLSDLMSYVSSWARSNSLWPMTFGLACCAVEMMHTAASKYDLDRYGIMFRAS 77 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQ+DVMIVAGTLTNKMA ALR+VYDQM EPRYVISMGSCANGGGYYHYSYSVVRGCDRI Sbjct: 78 PRQADVMIVAGTLTNKMAPALRKVYDQMTEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 137 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181 VPVDIYVPGCPPTAEAL+YGIL LQ+KI R Sbjct: 138 VPVDIYVPGCPPTAEALLYGILCLQQKINRTA 169 >gi|293603920|ref|ZP_06686335.1| NADH-quinone oxidoreductase subunit B [Achromobacter piechaudii ATCC 43553] gi|311104659|ref|YP_003977512.1| NADH-quinone oxidoreductase subunit B [Achromobacter xylosoxidans A8] gi|218528077|sp|A9II02|NUOB_BORPD RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|292817757|gb|EFF76823.1| NADH-quinone oxidoreductase subunit B [Achromobacter piechaudii ATCC 43553] gi|310759348|gb|ADP14797.1| NADH-quinone oxidoreductase, B subunit [Achromobacter xylosoxidans A8] gi|317401989|gb|EFV82589.1| NADH-ubiquinone oxidoreductase [Achromobacter xylosoxidans C54] Length = 158 Score = 241 bits (614), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 110/151 (72%), Positives = 127/151 (84%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 I +GF+ TS D+ + WA+TGS+ MTFGLACCAVEMM A RYDL++FG R SPRQ Sbjct: 6 ILKQGFITTSADKFLNWAKTGSMWPMTFGLACCAVEMMHAGAARYDLDQFGIIFRPSPRQ 65 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 SD+MIVAGTL NKMA ALR+VYDQMPEPR+V+SMGSCANGGGYYHYSYSVVRGCDRIVPV Sbjct: 66 SDLMIVAGTLCNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIVPV 125 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 D+YVPGCPPTAEAL+YG+L +Q KIR + Sbjct: 126 DVYVPGCPPTAEALVYGLLQMQNKIRLTNTI 156 >gi|121706424|ref|XP_001271474.1| NADH-ubiquinone oxidoreductase subunit B, putative [Aspergillus clavatus NRRL 1] gi|119399622|gb|EAW10048.1| NADH-ubiquinone oxidoreductase subunit B, putative [Aspergillus clavatus NRRL 1] Length = 225 Score = 241 bits (614), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 118/177 (66%), Positives = 135/177 (76%), Gaps = 2/177 (1%) Query: 4 TTVNQKIISGQSSCSLEKVDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFG 61 T + + SGQ KV + S E +++T++DQ+ WAR SL MTFG Sbjct: 38 TALEHRSQSGQPLTVSGKVRKEVPLPSQEKKEGAMQYVLTTLDQVANWARQSSLWPMTFG 97 Query: 62 LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPR 121 LACCAVEMM S PRYD +R G RASPRQSDVMIVAGTLTNKMA ALR+VYDQMP+PR Sbjct: 98 LACCAVEMMHLSTPRYDQDRLGIIFRASPRQSDVMIVAGTLTNKMAPALRQVYDQMPDPR 157 Query: 122 YVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 +VISMGSCANGGGYYHYSYSVVRGCDRIVPVD+YVPGCPPT+EAL+YGI LQKK+R Sbjct: 158 WVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTSEALMYGIFQLQKKMR 214 >gi|297538955|ref|YP_003674724.1| NADH-quinone oxidoreductase subunit B [Methylotenera sp. 301] gi|297258302|gb|ADI30147.1| NADH-quinone oxidoreductase, B subunit [Methylotenera sp. 301] Length = 158 Score = 241 bits (614), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 111/151 (73%), Positives = 127/151 (84%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 I KGF+ T++D ++ + RTGS+ MTFGLACCAVEMM A RYDL+RFG R SPRQ Sbjct: 6 ILEKGFVTTTLDTVINYTRTGSMWPMTFGLACCAVEMMHAGASRYDLDRFGIVFRGSPRQ 65 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 SDVMIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSY+VVRGCDRIVPV Sbjct: 66 SDVMIVAGTLVNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYAVVRGCDRIVPV 125 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 D+YVPGCPPTAEAL+YGI+ LQ KI+R + Sbjct: 126 DVYVPGCPPTAEALLYGIIQLQNKIKRTNTI 156 >gi|91789115|ref|YP_550067.1| NADH dehydrogenase subunit B [Polaromonas sp. JS666] gi|123164659|sp|Q127X3|NUOB_POLSJ RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|91698340|gb|ABE45169.1| NADH dehydrogenase subunit B [Polaromonas sp. JS666] Length = 159 Score = 241 bits (614), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 111/151 (73%), Positives = 128/151 (84%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 + ++GF+ TS D +V WA+TGSL MTFGLACCAVEMM A RYD++RFG R SPRQ Sbjct: 6 VFNEGFMTTSYDSVVNWAKTGSLWPMTFGLACCAVEMMHAGAARYDMDRFGMLFRPSPRQ 65 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 SD+MIVAGTL NKM ALR+VYDQM EPR+V+SMGSCANGGGYYHYSYSVVRGCDRIVPV Sbjct: 66 SDLMIVAGTLCNKMGPALRKVYDQMSEPRWVLSMGSCANGGGYYHYSYSVVRGCDRIVPV 125 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 D+YVPGCPPTAEAL+YGI+ LQ+KIRR + Sbjct: 126 DVYVPGCPPTAEALLYGIIQLQQKIRRTNTI 156 >gi|326489346|dbj|BAK01656.1| predicted protein [Hordeum vulgare subsp. vulgare] gi|326511367|dbj|BAJ87697.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 201 Score = 241 bits (614), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 114/142 (80%), Positives = 123/142 (86%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 F+V+ VD L+ WAR GS+ MTFGLACCAVEMM A RYD +RFG R SPRQSD MI Sbjct: 50 FVVSKVDDLMNWARRGSIWPMTFGLACCAVEMMHAGAARYDFDRFGVIFRPSPRQSDCMI 109 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP Sbjct: 110 VAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 169 Query: 158 GCPPTAEALIYGILLLQKKIRR 179 GCPPTAEAL+YG+L LQKKI R Sbjct: 170 GCPPTAEALLYGVLQLQKKINR 191 >gi|253998384|ref|YP_003050447.1| NADH dehydrogenase subunit B [Methylovorus sp. SIP3-4] gi|313200460|ref|YP_004039118.1| NADH-quinone oxidoreductase subunit B [Methylovorus sp. MP688] gi|253985063|gb|ACT49920.1| NADH-quinone oxidoreductase, B subunit [Methylovorus sp. SIP3-4] gi|312439776|gb|ADQ83882.1| NADH-quinone oxidoreductase, B subunit [Methylovorus sp. MP688] Length = 158 Score = 241 bits (614), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 111/151 (73%), Positives = 127/151 (84%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 + KGF+ T++D ++ + RTGSL MTFGLACCAVEMM A RYDL+RFG R SPRQ Sbjct: 6 VLEKGFVTTTLDTVINYTRTGSLWPMTFGLACCAVEMMHAGASRYDLDRFGIVFRPSPRQ 65 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 SDVMIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSY+VVRGCDRIVPV Sbjct: 66 SDVMIVAGTLVNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYAVVRGCDRIVPV 125 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 D+YVPGCPPTAEAL+YGI+ LQ KI+R + Sbjct: 126 DVYVPGCPPTAEALLYGIIQLQNKIKRTNTI 156 >gi|9652190|gb|AAF91434.1| NADH-ubiquinone oxidoreductase subunit PSST [Lupinus luteus] Length = 192 Score = 241 bits (614), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 113/142 (79%), Positives = 123/142 (86%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 F+++ VD L+ WAR GS+ MTFGLACCAVEMM RYDL+RFG R SPRQSD MI Sbjct: 41 FVISKVDDLMNWARRGSIWPMTFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDCMI 100 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP Sbjct: 101 VAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 160 Query: 158 GCPPTAEALIYGILLLQKKIRR 179 GCPPTAEAL+YG+L LQKKI R Sbjct: 161 GCPPTAEALLYGLLQLQKKINR 182 >gi|91776412|ref|YP_546168.1| NADH-quinone oxidoreductase, B subunit [Methylobacillus flagellatus KT] gi|123380391|sp|Q1GZL0|NUOB_METFK RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|91710399|gb|ABE50327.1| NADH dehydrogenase subunit B [Methylobacillus flagellatus KT] Length = 158 Score = 241 bits (614), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 111/151 (73%), Positives = 127/151 (84%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 + KGF+ T++D ++ + RTGSL MTFGLACCAVEMM A RYDL+RFG R SPRQ Sbjct: 6 VLEKGFVTTTLDTVINYTRTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGIVFRPSPRQ 65 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 SDVMIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSY+VVRGCDRIVPV Sbjct: 66 SDVMIVAGTLVNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYAVVRGCDRIVPV 125 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 D+YVPGCPPTAEAL+YGI+ LQ KI+R + Sbjct: 126 DVYVPGCPPTAEALLYGIIQLQNKIKRTNTI 156 >gi|88658003|ref|YP_507585.1| NADH dehydrogenase subunit B [Ehrlichia chaffeensis str. Arkansas] gi|123493072|sp|Q2GG48|NUOB_EHRCR RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|88599460|gb|ABD44929.1| NADH dehydrogenase I, B subunit [Ehrlichia chaffeensis str. Arkansas] Length = 179 Score = 241 bits (614), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 114/150 (76%), Positives = 125/150 (83%), Gaps = 4/150 (2%) Query: 34 THKGFLVTSVDQLVT----WARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS 89 H+GF+VT L+ WAR+ SL MTFGLACCAVEMM + RYDL+R+G RAS Sbjct: 18 NHQGFMVTQFSDLINYISNWARSNSLWPMTFGLACCAVEMMHTAASRYDLDRYGVMFRAS 77 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQ+DVMIVAGTLTNKMA ALR+VYDQM EPRYVISMGSCANGGGYYHYSYSVVRGCDRI Sbjct: 78 PRQADVMIVAGTLTNKMAPALRKVYDQMTEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 137 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRR 179 VPVDIYVPGCPPTAEAL+YGI LQ+KI R Sbjct: 138 VPVDIYVPGCPPTAEALLYGIFCLQQKINR 167 >gi|121604331|ref|YP_981660.1| NADH dehydrogenase subunit B [Polaromonas naphthalenivorans CJ2] gi|218528003|sp|A1VM61|NUOB_POLNA RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|120593300|gb|ABM36739.1| NADH dehydrogenase subunit B [Polaromonas naphthalenivorans CJ2] Length = 159 Score = 241 bits (614), Expect = 5e-62, Method: Compositional matrix adjust. Identities = 112/151 (74%), Positives = 127/151 (84%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 + +GF+ TS D +V WA+TGSL MTFGLACCAVEMM A RYD++RFG R SPRQ Sbjct: 6 VFKEGFVTTSYDSVVNWAKTGSLWPMTFGLACCAVEMMHAGAARYDIDRFGMLFRPSPRQ 65 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 SD+MIVAGTL NKM ALR+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPV Sbjct: 66 SDLMIVAGTLCNKMGPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPV 125 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 D+YVPGCPPTAEAL+YGI+ LQ+KIRR + Sbjct: 126 DVYVPGCPPTAEALLYGIIQLQQKIRRTNTI 156 >gi|253996972|ref|YP_003049036.1| NADH dehydrogenase subunit B [Methylotenera mobilis JLW8] gi|253983651|gb|ACT48509.1| NADH-quinone oxidoreductase, B subunit [Methylotenera mobilis JLW8] Length = 158 Score = 241 bits (614), Expect = 5e-62, Method: Compositional matrix adjust. Identities = 111/151 (73%), Positives = 127/151 (84%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 + KGF+ T++D ++ + RTGSL MTFGLACCAVEMM A RYDL+RFG R SPRQ Sbjct: 6 VLEKGFVTTTLDTVINYTRTGSLWPMTFGLACCAVEMMHAGASRYDLDRFGIVFRPSPRQ 65 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 SDVMIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSY+VVRGCDRIVPV Sbjct: 66 SDVMIVAGTLVNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYAVVRGCDRIVPV 125 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 D+YVPGCPPTAEAL+YGI+ LQ KI+R + Sbjct: 126 DVYVPGCPPTAEALLYGIIQLQNKIKRTNTI 156 >gi|156048917|ref|XP_001590425.1| NADH-ubiquinone oxidoreductase [Sclerotinia sclerotiorum 1980] gi|154692564|gb|EDN92302.1| NADH-ubiquinone oxidoreductase [Sclerotinia sclerotiorum 1980 UF-70] Length = 235 Score = 241 bits (614), Expect = 5e-62, Method: Compositional matrix adjust. Identities = 110/141 (78%), Positives = 123/141 (87%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 + +T++DQ+ WAR GSL MTFGLACCAVEMM S PRYD +R G RASPRQSDVMI Sbjct: 84 YALTTLDQIANWARQGSLWPMTFGLACCAVEMMHLSTPRYDQDRLGIIFRASPRQSDVMI 143 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGTLTNKMA ALR+VYDQMP+PR+V+SMGSCANGGGYYHYSYSV RGCDRIVPVDIYVP Sbjct: 144 VAGTLTNKMAPALRQVYDQMPDPRWVVSMGSCANGGGYYHYSYSVTRGCDRIVPVDIYVP 203 Query: 158 GCPPTAEALIYGILLLQKKIR 178 GCPPT+EAL+YGI LQKK+R Sbjct: 204 GCPPTSEALMYGIFQLQKKMR 224 >gi|217075608|gb|ACJ86164.1| unknown [Medicago truncatula] Length = 198 Score = 240 bits (613), Expect = 5e-62, Method: Compositional matrix adjust. Identities = 111/140 (79%), Positives = 123/140 (87%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 ++++ VD L+ WARTGS+ MTFGLACCAVEMM RYDL+RFG R SPRQSD MI Sbjct: 59 YVISKVDNLMNWARTGSIWPMTFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDCMI 118 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGTLTNKMA ALR+VYDQMPEPR+V+SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP Sbjct: 119 VAGTLTNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 178 Query: 158 GCPPTAEALIYGILLLQKKI 177 GCPPTAEAL+YG+L LQKKI Sbjct: 179 GCPPTAEALLYGLLQLQKKI 198 >gi|302879341|ref|YP_003847905.1| NADH-quinone oxidoreductase, B subunit [Gallionella capsiferriformans ES-2] gi|302582130|gb|ADL56141.1| NADH-quinone oxidoreductase, B subunit [Gallionella capsiferriformans ES-2] Length = 160 Score = 240 bits (613), Expect = 5e-62, Method: Compositional matrix adjust. Identities = 113/151 (74%), Positives = 127/151 (84%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 I KG + T++D ++ + RTGSL MTFGLACCAVEMMQA RYDL+RFG R SPRQ Sbjct: 6 ILEKGVVTTTLDTIINYTRTGSLWPMTFGLACCAVEMMQAGASRYDLDRFGIVFRPSPRQ 65 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 SDVMIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPV Sbjct: 66 SDVMIVAGTLCNKMAPALRKVYDQMSEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPV 125 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 DIYVPGCPPTAEAL+YG++ LQ KI+R + Sbjct: 126 DIYVPGCPPTAEALLYGLIQLQNKIKRTNTI 156 >gi|327301805|ref|XP_003235595.1| NADH:ubiquinone oxidoreductase 19.3kD subunit [Trichophyton rubrum CBS 118892] gi|326462947|gb|EGD88400.1| NADH:ubiquinone oxidoreductase 19.3kD subunit [Trichophyton rubrum CBS 118892] Length = 227 Score = 240 bits (613), Expect = 5e-62, Method: Compositional matrix adjust. Identities = 111/141 (78%), Positives = 123/141 (87%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 + +T++DQ+ WAR GSL MTFGLACCAVEMM S PRYD +R G RASPRQSDVMI Sbjct: 76 YALTTLDQVANWARQGSLWPMTFGLACCAVEMMHLSTPRYDQDRLGIIFRASPRQSDVMI 135 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSV RGCDRIVPVDIYVP Sbjct: 136 VAGTLTNKMAPALRQVYDQMPEPRWVISMGSCANGGGYYHYSYSVTRGCDRIVPVDIYVP 195 Query: 158 GCPPTAEALIYGILLLQKKIR 178 GCPPT+EAL+YGI LQ+K+R Sbjct: 196 GCPPTSEALMYGIFQLQRKMR 216 >gi|42520927|ref|NP_966842.1| NADH dehydrogenase subunit B [Wolbachia endosymbiont of Drosophila melanogaster] gi|58698296|ref|ZP_00373213.1| NADH-quinone oxidoreductase, B subunit [Wolbachia endosymbiont of Drosophila ananassae] gi|225630974|ref|YP_002727765.1| NADH dehydrogenase I, B subunit [Wolbachia sp. wRi] gi|225631316|ref|ZP_03787991.1| NADH dehydrogenase I, B subunit [Wolbachia endosymbiont of Muscidifurax uniraptor] gi|81652220|sp|Q73G42|NUOB_WOLPM RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|254767799|sp|C0R4Y2|NUOB_WOLWR RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|42410668|gb|AAS14776.1| NADH dehydrogenase I, B subunit [Wolbachia endosymbiont of Drosophila melanogaster] gi|58535169|gb|EAL59251.1| NADH-quinone oxidoreductase, B subunit [Wolbachia endosymbiont of Drosophila ananassae] gi|225590991|gb|EEH12198.1| NADH dehydrogenase I, B subunit [Wolbachia endosymbiont of Muscidifurax uniraptor] gi|225592955|gb|ACN95974.1| NADH dehydrogenase I, B subunit [Wolbachia sp. wRi] Length = 168 Score = 240 bits (613), Expect = 6e-62, Method: Compositional matrix adjust. Identities = 117/164 (71%), Positives = 133/164 (81%), Gaps = 8/164 (4%) Query: 23 DADFSRISSEITHKGFLVTS----VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78 + D+ R E GFLVT D ++ WAR+GSL MTFGLACCAVEMM + RYD Sbjct: 8 NDDWGRYKKE----GFLVTKFGDLTDYVMNWARSGSLWPMTFGLACCAVEMMHTASSRYD 63 Query: 79 LERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY 138 L+R+G RASPRQSDVMIVAGTLTNKMA+ALR+VYDQM +P+YVISMGSCANGGGYYHY Sbjct: 64 LDRYGIMFRASPRQSDVMIVAGTLTNKMAAALRKVYDQMADPKYVISMGSCANGGGYYHY 123 Query: 139 SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182 SYSVVRGCDRIVPVD+YVPGCPPTAEAL+YG+L LQ KI+R N Sbjct: 124 SYSVVRGCDRIVPVDVYVPGCPPTAEALLYGMLCLQNKIKRTRN 167 >gi|18461218|dbj|BAB84415.1| putative NADH2 dehydrogenase (ubiquinone) chain PSST precursor [Oryza sativa Japonica Group] gi|125527525|gb|EAY75639.1| hypothetical protein OsI_03544 [Oryza sativa Indica Group] gi|222619176|gb|EEE55308.1| hypothetical protein OsJ_03280 [Oryza sativa Japonica Group] Length = 199 Score = 240 bits (613), Expect = 6e-62, Method: Compositional matrix adjust. Identities = 113/142 (79%), Positives = 123/142 (86%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 F+++ VD L+ WAR GS+ MTFGLACCAVEMM A RYD +RFG R SPRQSD MI Sbjct: 48 FVISKVDDLMNWARRGSIWPMTFGLACCAVEMMHAGASRYDFDRFGVIFRPSPRQSDCMI 107 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP Sbjct: 108 VAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 167 Query: 158 GCPPTAEALIYGILLLQKKIRR 179 GCPPTAEAL+YG+L LQKKI R Sbjct: 168 GCPPTAEALLYGVLQLQKKINR 189 >gi|296828066|ref|XP_002851269.1| NADH dehydrogenase iron-sulfur protein 7 [Arthroderma otae CBS 113480] gi|238838823|gb|EEQ28485.1| NADH dehydrogenase iron-sulfur protein 7 [Arthroderma otae CBS 113480] Length = 227 Score = 240 bits (612), Expect = 7e-62, Method: Compositional matrix adjust. Identities = 111/141 (78%), Positives = 123/141 (87%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 + +T++DQ+ WAR GSL MTFGLACCAVEMM S PRYD +R G RASPRQSDVMI Sbjct: 76 YALTTLDQVANWARQGSLWPMTFGLACCAVEMMHLSTPRYDQDRLGIIFRASPRQSDVMI 135 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSV RGCDRIVPVDIYVP Sbjct: 136 VAGTLTNKMAPALRQVYDQMPEPRWVISMGSCANGGGYYHYSYSVTRGCDRIVPVDIYVP 195 Query: 158 GCPPTAEALIYGILLLQKKIR 178 GCPPT+EAL+YGI LQ+K+R Sbjct: 196 GCPPTSEALMYGIFQLQRKMR 216 >gi|257095318|ref|YP_003168959.1| NADH dehydrogenase subunit B [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257047842|gb|ACV37030.1| NADH-quinone oxidoreductase, B subunit [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 158 Score = 240 bits (612), Expect = 7e-62, Method: Compositional matrix adjust. Identities = 111/151 (73%), Positives = 128/151 (84%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 I +GF+ T+ D+L+ + RTGSL M+FGLACCA+EM+ A RYDL+RFG R SPRQ Sbjct: 6 ILQEGFVTTTADKLINYVRTGSLWPMSFGLACCAIEMIHAGCSRYDLDRFGIVFRPSPRQ 65 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 SDVM+VAGTLTNKMA A+R+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPV Sbjct: 66 SDVMVVAGTLTNKMAPAMRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPV 125 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 DIYVPGCPPTAEALIYG++ LQ KIRR + Sbjct: 126 DIYVPGCPPTAEALIYGLIQLQNKIRRTNTI 156 >gi|315056963|ref|XP_003177856.1| NADH dehydrogenase iron-sulfur protein 7 [Arthroderma gypseum CBS 118893] gi|311339702|gb|EFQ98904.1| NADH dehydrogenase iron-sulfur protein 7 [Arthroderma gypseum CBS 118893] Length = 227 Score = 240 bits (612), Expect = 7e-62, Method: Compositional matrix adjust. Identities = 111/141 (78%), Positives = 123/141 (87%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 + +T++DQ+ WAR GSL MTFGLACCAVEMM S PRYD +R G RASPRQSDVMI Sbjct: 76 YALTTLDQVANWARQGSLWPMTFGLACCAVEMMHLSTPRYDQDRLGIIFRASPRQSDVMI 135 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSV RGCDRIVPVDIYVP Sbjct: 136 VAGTLTNKMAPALRQVYDQMPEPRWVISMGSCANGGGYYHYSYSVTRGCDRIVPVDIYVP 195 Query: 158 GCPPTAEALIYGILLLQKKIR 178 GCPPT+EAL+YGI LQ+K+R Sbjct: 196 GCPPTSEALMYGIFQLQRKMR 216 >gi|120609951|ref|YP_969629.1| NADH dehydrogenase subunit B [Acidovorax citrulli AAC00-1] gi|326316100|ref|YP_004233772.1| NAD(P)H-quinone oxidoreductase subunit K [Acidovorax avenae subsp. avenae ATCC 19860] gi|218527970|sp|A1TLL7|NUOB_ACIAC RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|120588415|gb|ABM31855.1| NADH dehydrogenase subunit B [Acidovorax citrulli AAC00-1] gi|323372936|gb|ADX45205.1| NAD(P)H-quinone oxidoreductase subunit K [Acidovorax avenae subsp. avenae ATCC 19860] Length = 159 Score = 240 bits (612), Expect = 7e-62, Method: Compositional matrix adjust. Identities = 115/152 (75%), Positives = 129/152 (84%), Gaps = 1/152 (0%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPR 91 + +GF+ TS D +V WA+TGSL MTFGLACCAVEMM A+ RYD+ RFG RASPR Sbjct: 5 VMKEGFITTSYDSVVNWAKTGSLWPMTFGLACCAVEMMHAAAARYDIGRFGAEVFRASPR 64 Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151 QSD+MIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVP Sbjct: 65 QSDLMIVAGTLCNKMAPALRKVYDQMSEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVP 124 Query: 152 VDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 VD+YVPGCPPTAEALIYGI+ LQ+KIRR + Sbjct: 125 VDVYVPGCPPTAEALIYGIIQLQQKIRRTHTI 156 >gi|328854118|gb|EGG03252.1| hypothetical protein MELLADRAFT_78587 [Melampsora larici-populina 98AG31] Length = 258 Score = 240 bits (612), Expect = 7e-62, Method: Compositional matrix adjust. Identities = 110/155 (70%), Positives = 132/155 (85%), Gaps = 2/155 (1%) Query: 27 SRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF 84 +++S E G ++++++D++V W R GS+ MTFGLACCAVEMM + RYD +R G Sbjct: 94 NQLSLETPRNGAEYVLSTIDKIVNWGRQGSMWPMTFGLACCAVEMMHMAAARYDQDRLGV 153 Query: 85 APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR 144 RASPRQSD+MIVAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVR Sbjct: 154 VFRASPRQSDIMIVAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVR 213 Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179 GCDRIVPVD+YVPGCPPTAEAL+YG+L LQ+K+RR Sbjct: 214 GCDRIVPVDLYVPGCPPTAEALLYGMLQLQRKMRR 248 >gi|259482901|tpe|CBF77819.1| TPA: NADH-ubiquinone oxidoreductase subunit B, putative (AFU_orthologue; AFUA_4G05860) [Aspergillus nidulans FGSC A4] Length = 228 Score = 240 bits (612), Expect = 7e-62, Method: Compositional matrix adjust. Identities = 117/177 (66%), Positives = 138/177 (77%), Gaps = 2/177 (1%) Query: 4 TTVNQKIISGQSSCSLEKVDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFG 61 T + ++ +GQS + +V + S E +++T++DQ+ WAR SL MTFG Sbjct: 41 TALERQGNAGQSLTASGQVRREVPLPSQEKKEGAMQYVLTTLDQVANWARQSSLWPMTFG 100 Query: 62 LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPR 121 LACCAVEMM S PRYD +R G RASPRQSDVMIVAGTLTNKMA ALR+VYDQMP+PR Sbjct: 101 LACCAVEMMHLSTPRYDQDRLGIIFRASPRQSDVMIVAGTLTNKMAPALRQVYDQMPDPR 160 Query: 122 YVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 +VISMGSCANGGGYYHYSYSVVRGCDRIVPVD+YVPGCPPT+EAL+YGI LQKK+R Sbjct: 161 WVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTSEALMYGIFQLQKKMR 217 >gi|226292374|gb|EEH47794.1| NADH-ubiquinone oxidoreductase 20 kDa subunit [Paracoccidioides brasiliensis Pb18] Length = 228 Score = 240 bits (612), Expect = 7e-62, Method: Compositional matrix adjust. Identities = 111/143 (77%), Positives = 123/143 (86%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 F +T++DQ+ WAR SL MTFGLACCAVEMM S PRYD +R G RASPRQSDVMI Sbjct: 77 FALTTLDQVTNWARQSSLWPMTFGLACCAVEMMHLSTPRYDQDRLGIIFRASPRQSDVMI 136 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGTLTNKMA ALR+VYDQMP+PR+VISMGSCANGGGYYHYSYSV RGCDRIVPVDIYVP Sbjct: 137 VAGTLTNKMAPALRQVYDQMPDPRWVISMGSCANGGGYYHYSYSVTRGCDRIVPVDIYVP 196 Query: 158 GCPPTAEALIYGILLLQKKIRRV 180 GCPPT+EAL+YGI LQKK+R+ Sbjct: 197 GCPPTSEALMYGIFQLQKKMRQT 219 >gi|187477542|ref|YP_785566.1| NADH dehydrogenase subunit B [Bordetella avium 197N] gi|123513819|sp|Q2KV17|NUOB_BORA1 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|115422128|emb|CAJ48652.1| NADH dehydrogenase I chain B [Bordetella avium 197N] Length = 158 Score = 240 bits (612), Expect = 7e-62, Method: Compositional matrix adjust. Identities = 109/151 (72%), Positives = 126/151 (83%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 I +GF+ TS D+ + WA+TGS+ MTFGLACCAVEMM A RYDL++FG R SPRQ Sbjct: 6 ILKQGFITTSADKFINWAKTGSMWPMTFGLACCAVEMMHAGAARYDLDQFGIIFRPSPRQ 65 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 SD+MIVAGTL NKM ALR+VYDQMPEPR+V+SMGSCANGGGYYHYSYSVVRGCDRIVPV Sbjct: 66 SDLMIVAGTLCNKMGPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIVPV 125 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 D+YVPGCPPTAEAL+YG+L +Q KIR + Sbjct: 126 DVYVPGCPPTAEALVYGLLQMQNKIRLTNTI 156 >gi|225680692|gb|EEH18976.1| NADH dehydrogenase iron-sulfur protein [Paracoccidioides brasiliensis Pb03] Length = 228 Score = 240 bits (612), Expect = 8e-62, Method: Compositional matrix adjust. Identities = 111/143 (77%), Positives = 123/143 (86%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 F +T++DQ+ WAR SL MTFGLACCAVEMM S PRYD +R G RASPRQSDVMI Sbjct: 77 FALTTLDQVTNWARQSSLWPMTFGLACCAVEMMHLSTPRYDQDRLGIIFRASPRQSDVMI 136 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGTLTNKMA ALR+VYDQMP+PR+VISMGSCANGGGYYHYSYSV RGCDRIVPVDIYVP Sbjct: 137 VAGTLTNKMAPALRQVYDQMPDPRWVISMGSCANGGGYYHYSYSVTRGCDRIVPVDIYVP 196 Query: 158 GCPPTAEALIYGILLLQKKIRRV 180 GCPPT+EAL+YGI LQKK+R+ Sbjct: 197 GCPPTSEALMYGIFQLQKKMRQT 219 >gi|242765651|ref|XP_002341018.1| NADH-ubiquinone oxidoreductase subunit B, putative [Talaromyces stipitatus ATCC 10500] gi|218724214|gb|EED23631.1| NADH-ubiquinone oxidoreductase subunit B, putative [Talaromyces stipitatus ATCC 10500] Length = 226 Score = 240 bits (612), Expect = 8e-62, Method: Compositional matrix adjust. Identities = 111/141 (78%), Positives = 123/141 (87%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 + +T++DQ+ WAR SL MTFGLACCAVEMM S PRYD +R G RASPRQSDVMI Sbjct: 75 YALTTLDQIANWARQSSLWPMTFGLACCAVEMMHLSTPRYDQDRLGIIFRASPRQSDVMI 134 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGTLTNKMA ALR+VYDQMP+PR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP Sbjct: 135 VAGTLTNKMAPALRQVYDQMPDPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 194 Query: 158 GCPPTAEALIYGILLLQKKIR 178 GCPPT+EAL+YGI LQKK+R Sbjct: 195 GCPPTSEALMYGIFQLQKKMR 215 >gi|241763289|ref|ZP_04761346.1| NADH-quinone oxidoreductase, B subunit [Acidovorax delafieldii 2AN] gi|241367564|gb|EER61851.1| NADH-quinone oxidoreductase, B subunit [Acidovorax delafieldii 2AN] Length = 159 Score = 240 bits (612), Expect = 8e-62, Method: Compositional matrix adjust. Identities = 114/152 (75%), Positives = 129/152 (84%), Gaps = 1/152 (0%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPR 91 + +GF+ TS D +V WA+TGSL MTFGLACCAVEMM A+ RYD+ RFG RASPR Sbjct: 5 VMKEGFITTSYDSVVNWAKTGSLWPMTFGLACCAVEMMHAAAARYDIGRFGAEVFRASPR 64 Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151 QSD+MIVAGTL NKMA ALR+VYDQM EPR+V+SMGSCANGGGYYHYSYSVVRGCDRIVP Sbjct: 65 QSDLMIVAGTLCNKMAPALRKVYDQMSEPRWVLSMGSCANGGGYYHYSYSVVRGCDRIVP 124 Query: 152 VDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 VD+YVPGCPPTAEALIYGI+ LQ+KIRR + Sbjct: 125 VDVYVPGCPPTAEALIYGIIQLQQKIRRTNTI 156 >gi|170069760|ref|XP_001869339.1| NADH dehydrogenase iron-sulfur protein 7, mitochondrial [Culex quinquefasciatus] gi|167865642|gb|EDS29025.1| NADH dehydrogenase iron-sulfur protein 7, mitochondrial [Culex quinquefasciatus] Length = 212 Score = 239 bits (611), Expect = 9e-62, Method: Compositional matrix adjust. Identities = 108/147 (73%), Positives = 128/147 (87%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 + V +D ++ W R GS+ +TFGLACCAVEMM + PRYD++RFG RASPRQ+DV+I Sbjct: 61 WTVARLDDVLNWGRKGSIWPLTFGLACCAVEMMHIAAPRYDMDRFGVVFRASPRQADVII 120 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRI+PVDIYVP Sbjct: 121 VAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVP 180 Query: 158 GCPPTAEALIYGILLLQKKIRRVGNVK 184 GCPPTAEAL+YGIL LQKK++R+ ++ Sbjct: 181 GCPPTAEALLYGILQLQKKVKRMKTLQ 207 >gi|68171628|ref|ZP_00544995.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit [Ehrlichia chaffeensis str. Sapulpa] gi|67998949|gb|EAM85633.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit [Ehrlichia chaffeensis str. Sapulpa] Length = 182 Score = 239 bits (611), Expect = 9e-62, Method: Compositional matrix adjust. Identities = 113/150 (75%), Positives = 125/150 (83%), Gaps = 4/150 (2%) Query: 34 THKGFLVTSVDQLVT----WARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS 89 H+GF+VT L+ WAR+ SL MTFGLACCAVEMM + RYDL+R+G RAS Sbjct: 18 NHQGFMVTQFSDLINYISNWARSNSLWPMTFGLACCAVEMMHTAASRYDLDRYGVMFRAS 77 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQ+DVMIVAGTLTNKMA ALR+VYDQM EPRYVISMGSCANGGGYYHYSYSVVRGCDRI Sbjct: 78 PRQADVMIVAGTLTNKMAPALRKVYDQMTEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 137 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRR 179 VPVDI+VPGCPPTAEAL+YGI LQ+KI R Sbjct: 138 VPVDIFVPGCPPTAEALLYGIFCLQQKINR 167 >gi|295673086|ref|XP_002797089.1| NADH dehydrogenase iron-sulfur protein [Paracoccidioides brasiliensis Pb01] gi|226282461|gb|EEH38027.1| NADH dehydrogenase iron-sulfur protein [Paracoccidioides brasiliensis Pb01] Length = 228 Score = 239 bits (611), Expect = 9e-62, Method: Compositional matrix adjust. Identities = 111/143 (77%), Positives = 122/143 (85%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 F +T++DQ+ WAR SL MTFGLACCAVEMM S PRYD +R G RASPRQSDVMI Sbjct: 77 FALTTLDQVTNWARQSSLWPMTFGLACCAVEMMHLSTPRYDQDRLGIIFRASPRQSDVMI 136 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGTLTNKMA ALR+VYDQMP+PR+VISMGSCANGGGYYHYSYSV RGCDRIVPVDIYVP Sbjct: 137 VAGTLTNKMAPALRQVYDQMPDPRWVISMGSCANGGGYYHYSYSVTRGCDRIVPVDIYVP 196 Query: 158 GCPPTAEALIYGILLLQKKIRRV 180 GCPPT+EAL+YGI LQKK+R Sbjct: 197 GCPPTSEALMYGIFQLQKKMRHT 219 >gi|312211788|emb|CBX91872.1| hypothetical protein [Leptosphaeria maculans] Length = 233 Score = 239 bits (611), Expect = 9e-62, Method: Compositional matrix adjust. Identities = 111/143 (77%), Positives = 122/143 (85%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 + +T++DQ+ WAR SL MTFGLACCAVEMM S PRYD +R G RASPRQSDVMI Sbjct: 82 YALTTLDQVANWARQSSLWPMTFGLACCAVEMMHLSTPRYDQDRLGIIFRASPRQSDVMI 141 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGTLTNKMA ALR+VYDQMP+PR+VISMGSCANGGGYYHYSYSV RGCDRIVPVDIYVP Sbjct: 142 VAGTLTNKMAPALRQVYDQMPDPRWVISMGSCANGGGYYHYSYSVTRGCDRIVPVDIYVP 201 Query: 158 GCPPTAEALIYGILLLQKKIRRV 180 GCPPTAEAL+YGI LQKK+R Sbjct: 202 GCPPTAEALMYGIFQLQKKMRHT 224 >gi|195117025|ref|XP_002003051.1| GI24498 [Drosophila mojavensis] gi|193913626|gb|EDW12493.1| GI24498 [Drosophila mojavensis] Length = 205 Score = 239 bits (611), Expect = 9e-62, Method: Compositional matrix adjust. Identities = 116/180 (64%), Positives = 138/180 (76%), Gaps = 4/180 (2%) Query: 7 NQKIISGQSSCSL--EKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLAC 64 QK + C + K + F R + VT +D L+ W R GS+ MTFGLAC Sbjct: 23 KQKTMHNVDKCGMPARKGYSPFGRKQPRWGE--WAVTRLDDLLNWGRKGSVWPMTFGLAC 80 Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 CAVEMM + PRYD++RFG RASPRQ+D++IVAGTLTNKMA ALR++YDQMPEPR+VI Sbjct: 81 CAVEMMHIAGPRYDMDRFGVVFRASPRQTDLIIVAGTLTNKMAPALRKIYDQMPEPRWVI 140 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 SMGSCANGGGYYHYSYSVVRGCDRI+PVDIYVPGCPPTAEAL+YGIL LQKKI+R+ ++ Sbjct: 141 SMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALLYGILQLQKKIKRMRTLQ 200 >gi|194763060|ref|XP_001963652.1| GF19983 [Drosophila ananassae] gi|190629311|gb|EDV44728.1| GF19983 [Drosophila ananassae] Length = 217 Score = 239 bits (611), Expect = 9e-62, Method: Compositional matrix adjust. Identities = 115/196 (58%), Positives = 144/196 (73%), Gaps = 14/196 (7%) Query: 3 LTTVNQKIISGQSSCSLEKVDA-DFSRISSEITHKGFL-------------VTSVDQLVT 48 + T N + S +S + + ++ S EI KG+ + +D L+ Sbjct: 17 IATKNLPLTSALNSIWVRNQNTLTIAKTSEEIPKKGYSPFGNKQASAAEWSLARLDDLLN 76 Query: 49 WARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108 W R GS+ +TFGLACCAVEMM + PRYD++R+G RASPRQ+DV+IVAGTLTNKMA Sbjct: 77 WGRKGSIWPLTFGLACCAVEMMHIAAPRYDMDRYGVVFRASPRQADVIIVAGTLTNKMAP 136 Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168 ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRI+PVDIYVPGCPPTAEAL+Y Sbjct: 137 ALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALMY 196 Query: 169 GILLLQKKIRRVGNVK 184 G+L LQKK++R+ ++ Sbjct: 197 GVLQLQKKVKRMKTLQ 212 >gi|149927542|ref|ZP_01915796.1| NADH dehydrogenase subunit B [Limnobacter sp. MED105] gi|149823815|gb|EDM83041.1| NADH dehydrogenase subunit B [Limnobacter sp. MED105] Length = 158 Score = 239 bits (611), Expect = 9e-62, Method: Compositional matrix adjust. Identities = 110/151 (72%), Positives = 127/151 (84%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 + ++GF+ T+ D+L+ W RTGSL MTFGLACCAVEMM A RYDL+RFG R SPRQ Sbjct: 6 VLNEGFITTTADKLINWGRTGSLWPMTFGLACCAVEMMHAGASRYDLDRFGIIFRPSPRQ 65 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 SD+MIVAGTL NKMA ALR+VYDQM EPR+V+SMGSCANGGGYYHYSYSVVRGCDRIVPV Sbjct: 66 SDLMIVAGTLCNKMAPALRKVYDQMAEPRWVLSMGSCANGGGYYHYSYSVVRGCDRIVPV 125 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 D+YVPGCPPTAEAL+YG+L LQ KI+ + Sbjct: 126 DVYVPGCPPTAEALMYGLLQLQNKIKTTSTI 156 >gi|34498210|ref|NP_902425.1| NADH dehydrogenase subunit B [Chromobacterium violaceum ATCC 12472] gi|81655254|sp|Q7NUE5|NUOB2_CHRVO RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName: Full=NADH dehydrogenase I subunit B 2; AltName: Full=NDH-1 subunit B 2 gi|34104063|gb|AAQ60423.1| NADH-ubiquinone oxidoreductase, chain B [Chromobacterium violaceum ATCC 12472] Length = 171 Score = 239 bits (611), Expect = 9e-62, Method: Compositional matrix adjust. Identities = 108/150 (72%), Positives = 132/150 (88%) Query: 30 SSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS 89 S + GFL+T++D L A++GSL +++FGLACCAVEMM A+ RYD++RFG+ PRA+ Sbjct: 3 SPSLEKDGFLLTTLDGLFGRAQSGSLWYLSFGLACCAVEMMHAAAARYDMDRFGWIPRAT 62 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQ+D+MIVAGTLTNKMA A+R+VYDQM EPRYV+SMGSCANGGGYYHYSY+VVRGCDRI Sbjct: 63 PRQADLMIVAGTLTNKMAPAMRKVYDQMSEPRYVLSMGSCANGGGYYHYSYAVVRGCDRI 122 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRR 179 VPVD+YVPGCPPTAEAL+YG++ LQ KIRR Sbjct: 123 VPVDVYVPGCPPTAEALLYGLMQLQAKIRR 152 >gi|332528752|ref|ZP_08404729.1| NADH dehydrogenase subunit B [Hylemonella gracilis ATCC 19624] gi|332041818|gb|EGI78167.1| NADH dehydrogenase subunit B [Hylemonella gracilis ATCC 19624] Length = 159 Score = 239 bits (611), Expect = 9e-62, Method: Compositional matrix adjust. Identities = 114/152 (75%), Positives = 129/152 (84%), Gaps = 1/152 (0%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPR 91 + +GF+ TS D +V WA+TGSL MTFGLACCAVEMM A+ RYD+ RFG RASPR Sbjct: 5 VLKEGFVTTSYDTVVNWAKTGSLWPMTFGLACCAVEMMHAAAARYDIARFGSEVFRASPR 64 Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151 QSD+MIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVP Sbjct: 65 QSDLMIVAGTLCNKMAPALRKVYDQMSEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVP 124 Query: 152 VDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 VD+YVPGCPPTAEALIYGI+ LQ+K+RR + Sbjct: 125 VDVYVPGCPPTAEALIYGIIQLQQKVRRTQTI 156 >gi|299751278|ref|XP_002911618.1| NADH-ubiquinone oxidoreductase 20 kDa subunit [Coprinopsis cinerea okayama7#130] gi|298409301|gb|EFI28124.1| NADH-ubiquinone oxidoreductase 20 kDa subunit [Coprinopsis cinerea okayama7#130] Length = 223 Score = 239 bits (611), Expect = 9e-62, Method: Compositional matrix adjust. Identities = 111/172 (64%), Positives = 136/172 (79%) Query: 8 QKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAV 67 + S Q ++ K ++ + + ++++++D++ WAR GS+ MTFGLACCAV Sbjct: 42 ESATSTQPYTAIAKQGSNQLSLETPQNKAEYVLSTLDKVANWARQGSMWPMTFGLACCAV 101 Query: 68 EMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMG 127 EMM + RYD +R G RASPRQSD+MIVAGTLTNKMA ALR+VYDQMPEPR+VISMG Sbjct: 102 EMMHMAAARYDQDRLGVVFRASPRQSDIMIVAGTLTNKMAPALRKVYDQMPEPRWVISMG 161 Query: 128 SCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179 SCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG+L LQ+K+RR Sbjct: 162 SCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGMLQLQRKMRR 213 >gi|254468178|ref|ZP_05081584.1| NADH-quinone oxidoreductase, b subunit [beta proteobacterium KB13] gi|207086988|gb|EDZ64271.1| NADH-quinone oxidoreductase, b subunit [beta proteobacterium KB13] Length = 158 Score = 239 bits (611), Expect = 9e-62, Method: Compositional matrix adjust. Identities = 109/151 (72%), Positives = 128/151 (84%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 + KGF+ T++D L+ + RT S+ MTFGLACCAVEMM A RYDL+RFG R SPRQ Sbjct: 6 LLEKGFITTNLDTLINYTRTNSMWPMTFGLACCAVEMMHAGASRYDLDRFGMVFRPSPRQ 65 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 SD+MIVAGTL NKMA ALR+VYDQMP+P++VISMGSCANGGGYYHYSYSVVRGCDRIVPV Sbjct: 66 SDLMIVAGTLVNKMAPALRKVYDQMPDPKWVISMGSCANGGGYYHYSYSVVRGCDRIVPV 125 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 D+YVPGCPPTAEAL++G+L LQKKI+R + Sbjct: 126 DVYVPGCPPTAEALMFGLLQLQKKIKRTNTI 156 >gi|157117673|ref|XP_001658881.1| NADH-plastoquinone oxidoreductase [Aedes aegypti] gi|108875970|gb|EAT40195.1| NADH-plastoquinone oxidoreductase [Aedes aegypti] Length = 215 Score = 239 bits (611), Expect = 9e-62, Method: Compositional matrix adjust. Identities = 108/147 (73%), Positives = 128/147 (87%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 + V +D ++ W R GS+ +TFGLACCAVEMM + PRYD++RFG RASPRQ+DV+I Sbjct: 64 WTVARLDDVLNWGRKGSIWPLTFGLACCAVEMMHIAAPRYDMDRFGVVFRASPRQADVII 123 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRI+PVDIYVP Sbjct: 124 VAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVP 183 Query: 158 GCPPTAEALIYGILLLQKKIRRVGNVK 184 GCPPTAEAL+YGIL LQKK++R+ ++ Sbjct: 184 GCPPTAEALLYGILQLQKKVKRMKTLQ 210 >gi|291231230|ref|XP_002735571.1| PREDICTED: NADH dehydrogenase iron-sulfur protein 7, mitochondrial-like [Saccoglossus kowalevskii] Length = 220 Score = 239 bits (611), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 111/142 (78%), Positives = 123/142 (86%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 ++VT +D L WAR S+ MTFGLACCAVEMM + PRYD++RFG RASPRQSD MI Sbjct: 69 YVVTGLDHLANWARRSSIWPMTFGLACCAVEMMHMAAPRYDMDRFGIVFRASPRQSDCMI 128 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRG DR+VPVDIYVP Sbjct: 129 VAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGVDRVVPVDIYVP 188 Query: 158 GCPPTAEALIYGILLLQKKIRR 179 GCPPTAEAL+YG L LQKKI+R Sbjct: 189 GCPPTAEALLYGFLQLQKKIKR 210 >gi|66512193|ref|XP_392437.2| PREDICTED: probable NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial [Apis mellifera] Length = 223 Score = 239 bits (611), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 110/173 (63%), Positives = 136/173 (78%) Query: 12 SGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQ 71 + +SS + +S + + V +D ++ W R GS+ +TFGLACCAVEMM Sbjct: 46 TSESSLPEKAKKIPYSPFQNTNNLAEYAVARLDDILNWGRKGSIWPLTFGLACCAVEMMH 105 Query: 72 ASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCAN 131 + PRYD++R+G RASPRQ+DV+IVAGTLTNKMA ALR++YDQMPEPR+VISMGSCAN Sbjct: 106 IAAPRYDMDRYGVVFRASPRQADVIIVAGTLTNKMAPALRKIYDQMPEPRWVISMGSCAN 165 Query: 132 GGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 GGGYYHYSYSVVRGCDRI+PVDIYVPGCPPTAEAL+YGIL LQKKI+R+ ++ Sbjct: 166 GGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALMYGILQLQKKIKRMKTLQ 218 >gi|321466001|gb|EFX76999.1| hypothetical protein DAPPUDRAFT_54753 [Daphnia pulex] Length = 167 Score = 239 bits (611), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 109/147 (74%), Positives = 128/147 (87%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 + V +D L+ W R GSL +TFGLACCAVEMM + PRYD++R+G RASPRQ+DV+I Sbjct: 16 YAVARLDDLLNWGRKGSLWPLTFGLACCAVEMMHIAAPRYDMDRYGVVFRASPRQADVII 75 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRI+PVDIYVP Sbjct: 76 VAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVP 135 Query: 158 GCPPTAEALIYGILLLQKKIRRVGNVK 184 GCPPTAEAL+YGIL LQKK++R+ ++ Sbjct: 136 GCPPTAEALMYGILQLQKKVKRMKTIQ 162 >gi|255943669|ref|XP_002562602.1| Pc20g00390 [Penicillium chrysogenum Wisconsin 54-1255] gi|211587337|emb|CAP85368.1| Pc20g00390 [Penicillium chrysogenum Wisconsin 54-1255] Length = 230 Score = 239 bits (611), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 110/141 (78%), Positives = 123/141 (87%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 + +T++DQ+ WAR SL MTFGLACCAVEMM S PRYD +R G RASPRQSDVMI Sbjct: 79 YALTTLDQIANWARQSSLWPMTFGLACCAVEMMHLSTPRYDQDRLGIIFRASPRQSDVMI 138 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGTLTNKMA ALR+VYDQMP+PR+VISMGSCANGGGYYHYSYSVVRGCDR+VPVDIYVP Sbjct: 139 VAGTLTNKMAPALRQVYDQMPDPRWVISMGSCANGGGYYHYSYSVVRGCDRVVPVDIYVP 198 Query: 158 GCPPTAEALIYGILLLQKKIR 178 GCPPT+EAL+YGI LQKK+R Sbjct: 199 GCPPTSEALMYGIFQLQKKMR 219 >gi|56478177|ref|YP_159766.1| NADH dehydrogenase subunit B [Aromatoleum aromaticum EbN1] gi|81356986|sp|Q5P1E9|NUOB_AZOSE RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|56314220|emb|CAI08865.1| NADH dehydrogenase I, chain B [Aromatoleum aromaticum EbN1] Length = 158 Score = 239 bits (611), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 111/151 (73%), Positives = 127/151 (84%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 + +GF+ TS+D ++ W RTGSL MTFGLACCAVEM+ A RYDL+RFG R SPRQ Sbjct: 6 VFREGFVTTSLDAVINWTRTGSLWPMTFGLACCAVEMIHAGCARYDLDRFGVVFRPSPRQ 65 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 SD+MIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPV Sbjct: 66 SDLMIVAGTLCNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPV 125 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 D+YVPGCPPTAEAL+YGI+ LQ KI+R + Sbjct: 126 DVYVPGCPPTAEALLYGIIQLQNKIKRTNTI 156 >gi|320586540|gb|EFW99210.1| NADH-ubiquinone oxidoreductase subunit [Grosmannia clavigera kw1407] Length = 243 Score = 239 bits (611), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 109/141 (77%), Positives = 122/141 (86%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 + +T++D + W R GS MTFGLACCAVEMM S PRYD +RFG RASPRQSDVMI Sbjct: 92 YALTTLDIIANWGRQGSFWPMTFGLACCAVEMMHLSTPRYDQDRFGIIFRASPRQSDVMI 151 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVD+YVP Sbjct: 152 VAGTLTNKMAPALRQVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVP 211 Query: 158 GCPPTAEALIYGILLLQKKIR 178 GCPPT+EAL+YGI LQ+K+R Sbjct: 212 GCPPTSEALMYGIFQLQRKMR 232 >gi|169604652|ref|XP_001795747.1| hypothetical protein SNOG_05340 [Phaeosphaeria nodorum SN15] gi|160706616|gb|EAT87731.2| hypothetical protein SNOG_05340 [Phaeosphaeria nodorum SN15] Length = 229 Score = 239 bits (611), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 111/143 (77%), Positives = 122/143 (85%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 + +T++DQ+ WAR SL MTFGLACCAVEMM S PRYD +R G RASPRQSDVMI Sbjct: 78 YALTTLDQMANWARQSSLWPMTFGLACCAVEMMHLSTPRYDQDRLGIIFRASPRQSDVMI 137 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGTLTNKMA ALR+VYDQMP+PR+VISMGSCANGGGYYHYSYSV RGCDRIVPVDIYVP Sbjct: 138 VAGTLTNKMAPALRQVYDQMPDPRWVISMGSCANGGGYYHYSYSVTRGCDRIVPVDIYVP 197 Query: 158 GCPPTAEALIYGILLLQKKIRRV 180 GCPPTAEAL+YGI LQKK+R Sbjct: 198 GCPPTAEALMYGIFQLQKKMRHT 220 >gi|225559531|gb|EEH07814.1| NADH-ubiquinone oxidoreductase [Ajellomyces capsulatus G186AR] Length = 228 Score = 239 bits (611), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 111/143 (77%), Positives = 123/143 (86%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 + +T++DQ+ WAR GSL MTFGLACCAVEMM S PRYD +R G RASPRQSDVMI Sbjct: 77 YALTTLDQVTNWARQGSLWPMTFGLACCAVEMMHLSTPRYDQDRLGIIFRASPRQSDVMI 136 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGTLTNKMA ALR+VYDQMP+PR+VISMGSCANGGGYYHYSYSV RGCDRIVPVDIYVP Sbjct: 137 VAGTLTNKMAPALRQVYDQMPDPRWVISMGSCANGGGYYHYSYSVTRGCDRIVPVDIYVP 196 Query: 158 GCPPTAEALIYGILLLQKKIRRV 180 GCPPT+EAL+YGI LQKK+R Sbjct: 197 GCPPTSEALMYGIFQLQKKMRHT 219 >gi|46137521|ref|XP_390452.1| hypothetical protein FG10276.1 [Gibberella zeae PH-1] Length = 222 Score = 239 bits (611), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 113/155 (72%), Positives = 129/155 (83%), Gaps = 3/155 (1%) Query: 29 ISSEITHKGFL---VTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA 85 + SEI KG L +T++D + WAR SL MTFGLACCAVEMM S PRYD +R G Sbjct: 59 LPSEIPPKGALQYALTTLDAVTNWARQSSLWPMTFGLACCAVEMMHLSTPRYDQDRLGII 118 Query: 86 PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRG 145 RASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSY+VVRG Sbjct: 119 FRASPRQSDVMIVAGTLTNKMAPALRQVYDQMPEPRWVISMGSCANGGGYYHYSYAVVRG 178 Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 CDR+VPVD+YVPGCPPT+EAL+YGI LQ+K+R+ Sbjct: 179 CDRVVPVDVYVPGCPPTSEALMYGIFQLQRKMRQT 213 >gi|260223141|emb|CBA33408.1| NADH-quinone oxidoreductase subunit B [Curvibacter putative symbiont of Hydra magnipapillata] Length = 158 Score = 239 bits (611), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 113/152 (74%), Positives = 130/152 (85%), Gaps = 1/152 (0%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPR 91 + ++GF+ TS D +V WA+TGS+ MTFGLACCAVEMM A+ RYD+ RFG RASPR Sbjct: 4 VLNEGFVTTSYDSVVNWAKTGSIWPMTFGLACCAVEMMHAAAARYDISRFGSEVFRASPR 63 Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151 QSD+MIVAGTL NKMA ALR+VYDQM EPR+V+SMGSCANGGGYYHYSYSVVRGCDRIVP Sbjct: 64 QSDLMIVAGTLCNKMAPALRKVYDQMSEPRWVLSMGSCANGGGYYHYSYSVVRGCDRIVP 123 Query: 152 VDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 VD+YVPGCPPTAEAL+YGIL LQ+KIRR + Sbjct: 124 VDVYVPGCPPTAEALLYGILQLQQKIRRTQTI 155 >gi|119897688|ref|YP_932901.1| NADH dehydrogenase subunit B [Azoarcus sp. BH72] gi|218527941|sp|A1K5A9|NUOB1_AZOSB RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName: Full=NADH dehydrogenase I subunit B 1; AltName: Full=NDH-1 subunit B 1 gi|119670101|emb|CAL94014.1| putative NADH-ubiquinone oxidoreductase chain B [Azoarcus sp. BH72] Length = 158 Score = 239 bits (611), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 111/151 (73%), Positives = 127/151 (84%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 + +GF+ TS+D ++ W RTGSL MTFGLACCAVEM+ A RYDL+RFG R SPRQ Sbjct: 6 VFREGFVTTSLDAVINWTRTGSLWPMTFGLACCAVEMIHAGCSRYDLDRFGVVFRPSPRQ 65 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 SD+MIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPV Sbjct: 66 SDLMIVAGTLCNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPV 125 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 D+YVPGCPPTAEAL+YGI+ LQ KI+R + Sbjct: 126 DVYVPGCPPTAEALLYGIIQLQNKIKRTNTI 156 >gi|167588033|ref|ZP_02380421.1| NADH dehydrogenase subunit B [Burkholderia ubonensis Bu] Length = 167 Score = 239 bits (610), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 110/148 (74%), Positives = 129/148 (87%) Query: 30 SSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS 89 S + GF+VTS++ ++ ART SL +MTFGLACCAVEMM A+ RYD++RFG PRAS Sbjct: 5 SFTLEKDGFVVTSLEAVMAAARTNSLWYMTFGLACCAVEMMHAAGARYDMDRFGMIPRAS 64 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQ D+MIV+GTLTNKMA A+R+VYDQM EPRYV+SMGSCANGGGYYHYSYSVVRGCDRI Sbjct: 65 PRQCDLMIVSGTLTNKMAPAMRKVYDQMAEPRYVVSMGSCANGGGYYHYSYSVVRGCDRI 124 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKI 177 VPVD+YVPGCPPTAEALIYG++ LQ+KI Sbjct: 125 VPVDVYVPGCPPTAEALIYGLMQLQRKI 152 >gi|33592008|ref|NP_879652.1| NADH dehydrogenase subunit B [Bordetella pertussis Tohama I] gi|33597910|ref|NP_885553.1| NADH dehydrogenase subunit B [Bordetella parapertussis 12822] gi|33602815|ref|NP_890375.1| NADH dehydrogenase subunit B [Bordetella bronchiseptica RB50] gi|81425363|sp|Q7VZQ4|NUOB_BORPE RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|81426432|sp|Q7W5A8|NUOB_BORPA RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|81429887|sp|Q7WCU0|NUOB_BORBR RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|33571652|emb|CAE41145.1| NADH-ubiquinone oxidoreductase, 20 kDa subunit [Bordetella pertussis Tohama I] gi|33574339|emb|CAE38675.1| NADH-ubiquinone oxidoreductase, 20 kDa subunit [Bordetella parapertussis] gi|33577257|emb|CAE35814.1| NADH-ubiquinone oxidoreductase, 20 kDa subunit [Bordetella bronchiseptica RB50] gi|332381424|gb|AEE66271.1| NADH dehydrogenase subunit B [Bordetella pertussis CS] Length = 158 Score = 239 bits (610), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 109/151 (72%), Positives = 126/151 (83%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 I +GF+ TS D+ + WA+TGS+ MTFGLACCAVEMM A RYDL++FG R SPRQ Sbjct: 6 ILKQGFITTSADKFLNWAKTGSMWPMTFGLACCAVEMMHAGAARYDLDQFGIIFRPSPRQ 65 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 SD+MIVAGTL NKM ALR+VYDQMPEPR+V+SMGSCANGGGYYHYSYSVVRGCDRIVPV Sbjct: 66 SDLMIVAGTLCNKMGPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIVPV 125 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 D+YVPGCPPTAEAL+YG+L +Q KIR + Sbjct: 126 DVYVPGCPPTAEALVYGLLQMQNKIRLTNTI 156 >gi|225024124|ref|ZP_03713316.1| hypothetical protein EIKCOROL_00992 [Eikenella corrodens ATCC 23834] gi|294669093|ref|ZP_06734179.1| NADH dehydrogenase, B subunit [Neisseria elongata subsp. glycolytica ATCC 29315] gi|224943149|gb|EEG24358.1| hypothetical protein EIKCOROL_00992 [Eikenella corrodens ATCC 23834] gi|291309085|gb|EFE50328.1| NADH dehydrogenase, B subunit [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 159 Score = 239 bits (610), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 112/147 (76%), Positives = 127/147 (86%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 I +KGF+ S D ++ + RTGSL +TFGLACCAVEMM A M RYDL+RFG R SPRQ Sbjct: 6 ILNKGFITASADTVLNYVRTGSLWPVTFGLACCAVEMMHAGMARYDLDRFGIIFRPSPRQ 65 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 SD+MIVAGTLTNKMA ALRRVYDQM EPR+V+SMGSCANGGGYYHYSYSVVRGCDR+VPV Sbjct: 66 SDLMIVAGTLTNKMAPALRRVYDQMAEPRWVLSMGSCANGGGYYHYSYSVVRGCDRVVPV 125 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179 D+YVPGCPPTAEALIYG++ LQ KI+R Sbjct: 126 DVYVPGCPPTAEALIYGLIQLQGKIKR 152 >gi|319761763|ref|YP_004125700.1| NADH-quinone oxidoreductase, b subunit [Alicycliphilus denitrificans BC] gi|330826543|ref|YP_004389846.1| NADH-quinone oxidoreductase subunit B [Alicycliphilus denitrificans K601] gi|317116324|gb|ADU98812.1| NADH-quinone oxidoreductase, B subunit [Alicycliphilus denitrificans BC] gi|329311915|gb|AEB86330.1| NADH-quinone oxidoreductase, B subunit [Alicycliphilus denitrificans K601] Length = 159 Score = 239 bits (610), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 114/152 (75%), Positives = 129/152 (84%), Gaps = 1/152 (0%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPR 91 + +GF+ TS D +V WA+TGSL +TFGLACCAVEMM A+ RYDL RFG RASPR Sbjct: 5 VMKEGFVTTSYDAVVNWAKTGSLWPVTFGLACCAVEMMHAAAARYDLARFGAEVFRASPR 64 Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151 QSD+MIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDR+VP Sbjct: 65 QSDLMIVAGTLCNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRVVP 124 Query: 152 VDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 VD+YVPGCPPTAEALIYGI+ LQ+KIRR + Sbjct: 125 VDVYVPGCPPTAEALIYGIIQLQQKIRRTHTI 156 >gi|240272844|gb|EER36371.1| NADH-ubiquinone oxidoreductase [Ajellomyces capsulatus H143] gi|325088617|gb|EGC41927.1| NADH-ubiquinone oxidoreductase [Ajellomyces capsulatus H88] Length = 228 Score = 239 bits (610), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 111/143 (77%), Positives = 123/143 (86%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 + +T++DQ+ WAR GSL MTFGLACCAVEMM S PRYD +R G RASPRQSDVMI Sbjct: 77 YALTTLDQVTNWARQGSLWPMTFGLACCAVEMMHLSTPRYDQDRLGIIFRASPRQSDVMI 136 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGTLTNKMA ALR+VYDQMP+PR+VISMGSCANGGGYYHYSYSV RGCDRIVPVDIYVP Sbjct: 137 VAGTLTNKMAPALRQVYDQMPDPRWVISMGSCANGGGYYHYSYSVTRGCDRIVPVDIYVP 196 Query: 158 GCPPTAEALIYGILLLQKKIRRV 180 GCPPT+EAL+YGI LQKK+R Sbjct: 197 GCPPTSEALMYGIFQLQKKMRHT 219 >gi|160900611|ref|YP_001566193.1| NADH dehydrogenase subunit B [Delftia acidovorans SPH-1] gi|218527988|sp|A9BNB3|NUOB_DELAS RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|160366195|gb|ABX37808.1| NADH-quinone oxidoreductase, B subunit [Delftia acidovorans SPH-1] Length = 159 Score = 239 bits (609), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 114/152 (75%), Positives = 129/152 (84%), Gaps = 1/152 (0%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPR 91 + +GF+ TS D +V WA+TGSL MTFGLACCAVEMM A+ RYD+ RFG RASPR Sbjct: 5 VMKEGFITTSYDSVVNWAKTGSLWPMTFGLACCAVEMMHAAAARYDIGRFGSEVFRASPR 64 Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151 QSD+MIVAGTL NKMA A+R+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVP Sbjct: 65 QSDLMIVAGTLCNKMAPAMRKVYDQMSEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVP 124 Query: 152 VDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 VD+YVPGCPPTAEALIYGI+ LQ+KIRR + Sbjct: 125 VDVYVPGCPPTAEALIYGIIQLQQKIRRTHTI 156 >gi|218767068|ref|YP_002341580.1| NADH dehydrogenase subunit B [Neisseria meningitidis Z2491] gi|218527997|sp|A1INN9|NUOB_NEIMA RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|121051076|emb|CAM07346.1| NADH dehydrogenase I chain B [Neisseria meningitidis Z2491] Length = 160 Score = 239 bits (609), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 110/151 (72%), Positives = 129/151 (85%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 + KGF+ TS D ++ + RTGSL +TFGLACCAVEMM A M RYDL+RFG R SPRQ Sbjct: 6 VLKKGFITTSADTVLNYMRTGSLWPVTFGLACCAVEMMHAGMARYDLDRFGIIFRPSPRQ 65 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 +D+MIVAGTLTNKMASALRRVYDQ+ EPR+V+SMGSCANGGGYYHYSYSVVRG DR+VPV Sbjct: 66 ADLMIVAGTLTNKMASALRRVYDQLAEPRWVLSMGSCANGGGYYHYSYSVVRGADRVVPV 125 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 D+YVPGCPPTAEALIYG++ LQ+KI+R + Sbjct: 126 DVYVPGCPPTAEALIYGLIQLQQKIKRTSTI 156 >gi|58381050|ref|XP_310968.2| AGAP000170-PA [Anopheles gambiae str. PEST] gi|55243649|gb|EAA06474.3| AGAP000170-PA [Anopheles gambiae str. PEST] Length = 207 Score = 239 bits (609), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 107/147 (72%), Positives = 128/147 (87%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 + V +D ++ W R GS+ +TFGLACCAVEMM + PRYD++RFG RASPRQ+DV+I Sbjct: 56 WTVARLDDVLNWGRKGSIWPLTFGLACCAVEMMHIAAPRYDMDRFGVVFRASPRQADVII 115 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRI+PVDIYVP Sbjct: 116 VAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVP 175 Query: 158 GCPPTAEALIYGILLLQKKIRRVGNVK 184 GCPPTAEAL+YG+L LQKK++R+ ++ Sbjct: 176 GCPPTAEALLYGVLQLQKKVKRMKTLQ 202 >gi|217424871|ref|ZP_03456368.1| putative NADH-quinone oxidoreductase, B subunit [Burkholderia pseudomallei 576] gi|217392327|gb|EEC32352.1| putative NADH-quinone oxidoreductase, B subunit [Burkholderia pseudomallei 576] Length = 264 Score = 239 bits (609), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 107/145 (73%), Positives = 126/145 (86%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 + GF+VT++D + A+ SL +MTFGLACCAVEMM A+ RYD++RFG PRASPRQ Sbjct: 105 LEKDGFIVTTLDAAMAAAQKNSLWYMTFGLACCAVEMMHAAGARYDMDRFGMIPRASPRQ 164 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 D+MIVAGTLTNKMA A+RRVYDQM EPRYV+SMGSCANGGGYYHYSYSVVRGCDRIVPV Sbjct: 165 CDLMIVAGTLTNKMAPAMRRVYDQMAEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPV 224 Query: 153 DIYVPGCPPTAEALIYGILLLQKKI 177 D+YVPGCPPTAEAL+YG++ LQ+K+ Sbjct: 225 DVYVPGCPPTAEALVYGLMQLQRKV 249 >gi|329118899|ref|ZP_08247594.1| NADH-quinone oxidoreductase subunit B [Neisseria bacilliformis ATCC BAA-1200] gi|327464927|gb|EGF11217.1| NADH-quinone oxidoreductase subunit B [Neisseria bacilliformis ATCC BAA-1200] Length = 159 Score = 239 bits (609), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 111/147 (75%), Positives = 128/147 (87%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 + +KGF+ TS D ++ + RTGSL +TFGLACCAVEMM A M RYDL+RFG R SPRQ Sbjct: 6 VLNKGFITTSADTVLNYMRTGSLWPVTFGLACCAVEMMHAGMARYDLDRFGIIFRPSPRQ 65 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 SD+MIVAGTLTNKMA ALRRVYDQM EPR+V+SMGSCANGGGYYHYSYSVVRGCDR+VPV Sbjct: 66 SDLMIVAGTLTNKMAPALRRVYDQMAEPRWVLSMGSCANGGGYYHYSYSVVRGCDRVVPV 125 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179 D+YVPGCPPTAEAL+YG++ LQ KI+R Sbjct: 126 DVYVPGCPPTAEALLYGLIQLQGKIKR 152 >gi|194765258|ref|XP_001964744.1| GF23350 [Drosophila ananassae] gi|190615016|gb|EDV30540.1| GF23350 [Drosophila ananassae] Length = 211 Score = 239 bits (609), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 111/154 (72%), Positives = 129/154 (83%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP 90 + T + V +D L+ W R GS+ MTFGLACCAVEMM + PRYD++R+G RASP Sbjct: 53 DQKTWAEWTVARLDDLLNWGRKGSIWPMTFGLACCAVEMMHIAAPRYDMDRYGVVFRASP 112 Query: 91 RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150 RQ+D MIVAGTLTNKMA A+R+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRIV Sbjct: 113 RQADCMIVAGTLTNKMAPAMRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIV 172 Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 PVDIYVPGCPPTAEAL+YGIL LQKKI+R+ ++ Sbjct: 173 PVDIYVPGCPPTAEALMYGILQLQKKIKRMRTIQ 206 >gi|195024283|ref|XP_001985843.1| GH21035 [Drosophila grimshawi] gi|193901843|gb|EDW00710.1| GH21035 [Drosophila grimshawi] Length = 226 Score = 239 bits (609), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 106/142 (74%), Positives = 126/142 (88%) Query: 43 VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL 102 +D L+ W R GS+ +TFGLACCAVEMM + PRYD++R+G RASPRQ+DV+IVAGTL Sbjct: 80 LDDLLNWGRKGSIWPLTFGLACCAVEMMHIAAPRYDMDRYGVVFRASPRQADVIIVAGTL 139 Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162 TNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRI+PVDIYVPGCPPT Sbjct: 140 TNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPT 199 Query: 163 AEALIYGILLLQKKIRRVGNVK 184 AEAL+YG+L LQKK++R+ ++ Sbjct: 200 AEALLYGVLQLQKKVKRMKTLQ 221 >gi|226348821|gb|ACO50725.1| NADH dehydrogenase subunit 10 [Micromonas pusilla CCMP1545] Length = 158 Score = 239 bits (609), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 111/145 (76%), Positives = 124/145 (85%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 ++++ VD L+ WAR GSL MTFGLACCAVEMM RYDL+RFG R SPRQSDVMI Sbjct: 7 YILSKVDALLNWARKGSLWPMTFGLACCAVEMMHTGAARYDLDRFGMIFRPSPRQSDVMI 66 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGTLTNKMA ALR+VYDQMPEP++VISMGSCANGGGYYHYSY+VVRGCDRIVPVD+YVP Sbjct: 67 VAGTLTNKMAPALRKVYDQMPEPKWVISMGSCANGGGYYHYSYAVVRGCDRIVPVDVYVP 126 Query: 158 GCPPTAEALIYGILLLQKKIRRVGN 182 GCPPTAEAL+YG+L LQKKI N Sbjct: 127 GCPPTAEALLYGLLQLQKKIHTQTN 151 >gi|222475044|ref|YP_002563459.1| NADH dehydrogenase I chain B (nuoB) [Anaplasma marginale str. Florida] gi|238065053|sp|B9KI91|NUOB_ANAMF RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|222419180|gb|ACM49203.1| NADH dehydrogenase I chain B (nuoB) [Anaplasma marginale str. Florida] Length = 190 Score = 239 bits (609), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 118/151 (78%), Positives = 130/151 (86%), Gaps = 5/151 (3%) Query: 36 KGFLVTS----VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPR 91 +GF+VT VD +V W+R+GSL MTFGLACCAVEMM + RYDL+R+G RASPR Sbjct: 35 RGFVVTKFSDLVDSVVRWSRSGSLWPMTFGLACCAVEMMHTAASRYDLDRYGVMFRASPR 94 Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151 Q+DVMIVAGTLTNKMA ALRRVYDQM EP+YVISMGSCANGGGYYHYSYSVVRGCDRIVP Sbjct: 95 QADVMIVAGTLTNKMAPALRRVYDQMAEPKYVISMGSCANGGGYYHYSYSVVRGCDRIVP 154 Query: 152 VDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182 VDIYVPGCPPTAEAL+YGIL LQ+KI R GN Sbjct: 155 VDIYVPGCPPTAEALLYGILCLQQKIIR-GN 184 >gi|124382496|ref|YP_001024763.1| NADH-quinone oxidoreductase, B subunit [Burkholderia mallei NCTC 10229] gi|126447059|ref|YP_001079101.1| NADH-quinone oxidoreductase, B subunit [Burkholderia mallei NCTC 10247] gi|124290516|gb|ABM99785.1| NADH-quinone oxidoreductase, B subunit [Burkholderia mallei NCTC 10229] gi|126239913|gb|ABO03025.1| NADH-quinone oxidoreductase, B subunit [Burkholderia mallei NCTC 10247] Length = 322 Score = 239 bits (609), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 107/145 (73%), Positives = 126/145 (86%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 + GF+VT++D + A+ SL +MTFGLACCAVEMM A+ RYD++RFG PRASPRQ Sbjct: 163 LEKDGFIVTTLDAAMAAAQKNSLWYMTFGLACCAVEMMHAAGARYDMDRFGMIPRASPRQ 222 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 D+MIVAGTLTNKMA A+RRVYDQM EPRYV+SMGSCANGGGYYHYSYSVVRGCDRIVPV Sbjct: 223 CDLMIVAGTLTNKMAPAMRRVYDQMAEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPV 282 Query: 153 DIYVPGCPPTAEALIYGILLLQKKI 177 D+YVPGCPPTAEAL+YG++ LQ+K+ Sbjct: 283 DVYVPGCPPTAEALVYGLMQLQRKV 307 >gi|255550832|ref|XP_002516464.1| NADH-plastoquinone oxidoreductase, putative [Ricinus communis] gi|223544284|gb|EEF45805.1| NADH-plastoquinone oxidoreductase, putative [Ricinus communis] Length = 215 Score = 239 bits (609), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 111/142 (78%), Positives = 123/142 (86%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 ++++ VD L+ WAR GS+ MTFGLACCAVEMM RYDL+RFG R SPRQSD MI Sbjct: 64 YVISKVDDLMNWARRGSIWPMTFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDCMI 123 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP Sbjct: 124 VAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 183 Query: 158 GCPPTAEALIYGILLLQKKIRR 179 GCPPTAEAL+YG+L LQK+I R Sbjct: 184 GCPPTAEALLYGLLQLQKRINR 205 >gi|126454466|ref|YP_001067829.1| putative NADH-quinone oxidoreductase, B subunit [Burkholderia pseudomallei 1106a] gi|126228108|gb|ABN91648.1| putative NADH-quinone oxidoreductase, B subunit [Burkholderia pseudomallei 1106a] Length = 262 Score = 239 bits (609), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 107/145 (73%), Positives = 126/145 (86%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 + GF+VT++D + A+ SL +MTFGLACCAVEMM A+ RYD++RFG PRASPRQ Sbjct: 103 LEKDGFIVTTLDAAMAAAQKNSLWYMTFGLACCAVEMMHAAGARYDMDRFGMIPRASPRQ 162 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 D+MIVAGTLTNKMA A+RRVYDQM EPRYV+SMGSCANGGGYYHYSYSVVRGCDRIVPV Sbjct: 163 CDLMIVAGTLTNKMAPAMRRVYDQMAEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPV 222 Query: 153 DIYVPGCPPTAEALIYGILLLQKKI 177 D+YVPGCPPTAEAL+YG++ LQ+K+ Sbjct: 223 DVYVPGCPPTAEALVYGLMQLQRKV 247 >gi|121597251|ref|YP_990264.1| NADH-quinone oxidoreductase, B subunit [Burkholderia mallei SAVP1] gi|254355774|ref|ZP_04972053.1| NADH-quinone oxidoreductase, B subunit [Burkholderia mallei 2002721280] gi|121225049|gb|ABM48580.1| NADH-quinone oxidoreductase, B subunit [Burkholderia mallei SAVP1] gi|148024745|gb|EDK82928.1| NADH-quinone oxidoreductase, B subunit [Burkholderia mallei 2002721280] Length = 293 Score = 239 bits (609), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 107/145 (73%), Positives = 126/145 (86%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 + GF+VT++D + A+ SL +MTFGLACCAVEMM A+ RYD++RFG PRASPRQ Sbjct: 134 LEKDGFIVTTLDAAMAAAQKNSLWYMTFGLACCAVEMMHAAGARYDMDRFGMIPRASPRQ 193 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 D+MIVAGTLTNKMA A+RRVYDQM EPRYV+SMGSCANGGGYYHYSYSVVRGCDRIVPV Sbjct: 194 CDLMIVAGTLTNKMAPAMRRVYDQMAEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPV 253 Query: 153 DIYVPGCPPTAEALIYGILLLQKKI 177 D+YVPGCPPTAEAL+YG++ LQ+K+ Sbjct: 254 DVYVPGCPPTAEALVYGLMQLQRKV 278 >gi|195479097|ref|XP_002100761.1| GE15999 [Drosophila yakuba] gi|194188285|gb|EDX01869.1| GE15999 [Drosophila yakuba] Length = 221 Score = 238 bits (608), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 106/145 (73%), Positives = 127/145 (87%) Query: 40 VTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVA 99 + +D L+ W R GS+ +TFGLACCAVEMM + PRYD++R+G RASPRQ+DV+IVA Sbjct: 72 LARLDDLLNWGRKGSIWPLTFGLACCAVEMMHIAAPRYDMDRYGVVFRASPRQADVIIVA 131 Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGC 159 GTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRI+PVDIYVPGC Sbjct: 132 GTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVPGC 191 Query: 160 PPTAEALIYGILLLQKKIRRVGNVK 184 PPTAEAL+YG+L LQKK++R+ ++ Sbjct: 192 PPTAEALMYGVLQLQKKVKRMKTLQ 216 >gi|194765240|ref|XP_001964735.1| GF23344 [Drosophila ananassae] gi|190615007|gb|EDV30531.1| GF23344 [Drosophila ananassae] Length = 212 Score = 238 bits (608), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 115/172 (66%), Positives = 137/172 (79%), Gaps = 3/172 (1%) Query: 14 QSSCSLEKVDADFSRISSEITHKG-FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQA 72 + + LEK A +S + G + V +D LV W+R GS+ MTFGLACCAVEMM Sbjct: 38 EKNFGLEK--AKYSPFGGNQSSTGEWAVARLDDLVNWSRKGSIWPMTFGLACCAVEMMHF 95 Query: 73 SMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANG 132 + PRYD++R+G R SPRQ+D MIVAGTLTNKMA ALR+VYD+MP+PR+VISMGSCANG Sbjct: 96 AAPRYDMDRYGVLFRESPRQADCMIVAGTLTNKMAPALRKVYDEMPDPRWVISMGSCANG 155 Query: 133 GGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 GGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG+L LQKKI+R+ V+ Sbjct: 156 GGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALMYGVLQLQKKIKRIKTVQ 207 >gi|195567032|ref|XP_002107079.1| GD15767 [Drosophila simulans] gi|194204476|gb|EDX18052.1| GD15767 [Drosophila simulans] Length = 221 Score = 238 bits (608), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 110/189 (58%), Positives = 143/189 (75%), Gaps = 6/189 (3%) Query: 2 GLTTVNQKIISGQSSCSLEKVDADFSRI------SSEITHKGFLVTSVDQLVTWARTGSL 55 L +N ++ Q + + +V + + + + + + + +D L+ W R GS+ Sbjct: 28 ALPALNMVLVRQQQTLPVAEVAQNLPKKGYSPFGTKQSSVAEWSLARLDDLLNWGRKGSI 87 Query: 56 MWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYD 115 +TFGLACCAVEMM + PRYD++R+G RASPRQ+DV+IVAGTLTNKMA ALR+VYD Sbjct: 88 WPLTFGLACCAVEMMHIAAPRYDMDRYGVVFRASPRQADVIIVAGTLTNKMAPALRKVYD 147 Query: 116 QMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175 QMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRI+PVDIYVPGCPPTAEAL+YG+L LQK Sbjct: 148 QMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALMYGVLQLQK 207 Query: 176 KIRRVGNVK 184 K++R+ ++ Sbjct: 208 KVKRMKTLQ 216 >gi|224284596|gb|ACN40031.1| unknown [Picea sitchensis] Length = 205 Score = 238 bits (608), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 111/142 (78%), Positives = 122/142 (85%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 ++++ +D LV WAR GS+ MTFGLACCAVEMM RYDL+RFG R SPRQSD MI Sbjct: 54 YVISKIDALVNWARKGSIWPMTFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDCMI 113 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGG YYHYSYSVVRGCDRIVPVDIYVP Sbjct: 114 VAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGRYYHYSYSVVRGCDRIVPVDIYVP 173 Query: 158 GCPPTAEALIYGILLLQKKIRR 179 GCPPTAEAL+YG+L LQKKI R Sbjct: 174 GCPPTAEALLYGLLQLQKKIHR 195 >gi|195357046|ref|XP_002044925.1| GM11675 [Drosophila sechellia] gi|194124267|gb|EDW46310.1| GM11675 [Drosophila sechellia] Length = 221 Score = 238 bits (608), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 110/189 (58%), Positives = 143/189 (75%), Gaps = 6/189 (3%) Query: 2 GLTTVNQKIISGQSSCSLEKVDADFSRI------SSEITHKGFLVTSVDQLVTWARTGSL 55 L +N ++ Q + + +V + + + + + + + +D L+ W R GS+ Sbjct: 28 ALPALNMVLVRQQQTLPVAEVAQNLPKKGYSPFGTKQSSVAEWSLARLDDLLNWGRKGSI 87 Query: 56 MWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYD 115 +TFGLACCAVEMM + PRYD++R+G RASPRQ+DV+IVAGTLTNKMA ALR+VYD Sbjct: 88 WPLTFGLACCAVEMMHIAAPRYDMDRYGVVFRASPRQADVIIVAGTLTNKMAPALRKVYD 147 Query: 116 QMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175 QMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRI+PVDIYVPGCPPTAEAL+YG+L LQK Sbjct: 148 QMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALMYGVLQLQK 207 Query: 176 KIRRVGNVK 184 K++R+ ++ Sbjct: 208 KVKRMKTLQ 216 >gi|158291431|ref|XP_312939.3| AGAP003231-PA [Anopheles gambiae str. PEST] gi|157017771|gb|EAA08348.4| AGAP003231-PA [Anopheles gambiae str. PEST] Length = 220 Score = 238 bits (608), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 108/147 (73%), Positives = 127/147 (86%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 + V +D L+ W R GS+ FGLACCA+EMMQA+ PRYD++RFG RASPRQ+D +I Sbjct: 69 WTVARLDDLLNWGRKGSMWPTMFGLACCAMEMMQAAAPRYDIDRFGVLFRASPRQTDFII 128 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGTLTNKMA ALR++YDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRI+PVDIYVP Sbjct: 129 VAGTLTNKMAPALRKIYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVP 188 Query: 158 GCPPTAEALIYGILLLQKKIRRVGNVK 184 GCPPTAEALIYG+L LQKK++R+ V+ Sbjct: 189 GCPPTAEALIYGVLQLQKKVKRMKTVQ 215 >gi|18859983|ref|NP_573097.1| CG9172, isoform A [Drosophila melanogaster] gi|24642371|ref|NP_727921.1| CG9172, isoform B [Drosophila melanogaster] gi|7293168|gb|AAF48552.1| CG9172, isoform A [Drosophila melanogaster] gi|16769444|gb|AAL28941.1| LD31474p [Drosophila melanogaster] gi|22832322|gb|AAN09378.1| CG9172, isoform B [Drosophila melanogaster] gi|220944268|gb|ACL84677.1| CG9172-PA [synthetic construct] gi|220954204|gb|ACL89645.1| CG9172-PA [synthetic construct] Length = 221 Score = 238 bits (608), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 110/189 (58%), Positives = 143/189 (75%), Gaps = 6/189 (3%) Query: 2 GLTTVNQKIISGQSSCSLEKVDADFSRI------SSEITHKGFLVTSVDQLVTWARTGSL 55 L +N ++ Q + + +V + + + + + + + +D L+ W R GS+ Sbjct: 28 ALPALNLALVRQQQTLPVAEVAQNLPKKGYSPFGTKQSSVAEWSLARLDDLLNWGRKGSI 87 Query: 56 MWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYD 115 +TFGLACCAVEMM + PRYD++R+G RASPRQ+DV+IVAGTLTNKMA ALR+VYD Sbjct: 88 WPLTFGLACCAVEMMHIAAPRYDMDRYGVVFRASPRQADVIIVAGTLTNKMAPALRKVYD 147 Query: 116 QMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175 QMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRI+PVDIYVPGCPPTAEAL+YG+L LQK Sbjct: 148 QMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALMYGVLQLQK 207 Query: 176 KIRRVGNVK 184 K++R+ ++ Sbjct: 208 KVKRMKTLQ 216 >gi|48843827|gb|AAT47086.1| putative NADH-ubiquinone oxidoreductase 20 kDa subunit [Oryza sativa Japonica Group] gi|125553102|gb|EAY98811.1| hypothetical protein OsI_20756 [Oryza sativa Indica Group] gi|215769469|dbj|BAH01698.1| unnamed protein product [Oryza sativa Japonica Group] Length = 204 Score = 238 bits (608), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 112/142 (78%), Positives = 122/142 (85%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 F+++ VD L+ WAR GS+ MTFGLACCAVEMM RYD +RFG R SPRQSD MI Sbjct: 53 FVISKVDDLMNWARRGSIWPMTFGLACCAVEMMHTGASRYDFDRFGVIFRPSPRQSDCMI 112 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP Sbjct: 113 VAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 172 Query: 158 GCPPTAEALIYGILLLQKKIRR 179 GCPPTAEAL+YG+L LQKKI R Sbjct: 173 GCPPTAEALLYGVLQLQKKINR 194 >gi|126442009|ref|YP_001060575.1| putative NADH-quinone oxidoreductase, B subunit [Burkholderia pseudomallei 668] gi|126221502|gb|ABN85008.1| putative NADH-quinone oxidoreductase, B subunit [Burkholderia pseudomallei 668] Length = 297 Score = 238 bits (608), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 107/145 (73%), Positives = 126/145 (86%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 + GF+VT++D + A+ SL +MTFGLACCAVEMM A+ RYD++RFG PRASPRQ Sbjct: 138 LEKDGFIVTTLDAAMAAAQKNSLWYMTFGLACCAVEMMHAAGARYDMDRFGMIPRASPRQ 197 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 D+MIVAGTLTNKMA A+RRVYDQM EPRYV+SMGSCANGGGYYHYSYSVVRGCDRIVPV Sbjct: 198 CDLMIVAGTLTNKMAPAMRRVYDQMAEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPV 257 Query: 153 DIYVPGCPPTAEALIYGILLLQKKI 177 D+YVPGCPPTAEAL+YG++ LQ+K+ Sbjct: 258 DVYVPGCPPTAEALVYGLMQLQRKV 282 >gi|194894035|ref|XP_001977994.1| GG19352 [Drosophila erecta] gi|190649643|gb|EDV46921.1| GG19352 [Drosophila erecta] Length = 221 Score = 238 bits (608), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 106/145 (73%), Positives = 127/145 (87%) Query: 40 VTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVA 99 + +D L+ W R GS+ +TFGLACCAVEMM + PRYD++R+G RASPRQ+DV+IVA Sbjct: 72 LARLDDLLNWGRKGSIWPLTFGLACCAVEMMHIAAPRYDMDRYGVVFRASPRQADVIIVA 131 Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGC 159 GTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRI+PVDIYVPGC Sbjct: 132 GTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVPGC 191 Query: 160 PPTAEALIYGILLLQKKIRRVGNVK 184 PPTAEAL+YG+L LQKK++R+ ++ Sbjct: 192 PPTAEALMYGVLQLQKKVKRMKTLQ 216 >gi|114864804|gb|ABI83769.1| NADH-ubiquinone oxidoreductase [Anopheles funestus] Length = 207 Score = 238 bits (608), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 107/146 (73%), Positives = 127/146 (86%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 + V +D ++ W R GS+ +TFGLACCAVEMM + PRYD++RFG RASPRQ+DV+I Sbjct: 56 WTVARLDDVLNWGRKGSIWPLTFGLACCAVEMMHIAAPRYDMDRFGVVFRASPRQADVII 115 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRI+PVDIYVP Sbjct: 116 VAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVP 175 Query: 158 GCPPTAEALIYGILLLQKKIRRVGNV 183 GCPPTAEAL+YG+L LQKK++R+ + Sbjct: 176 GCPPTAEALLYGVLQLQKKVKRMKTL 201 >gi|312383258|gb|EFR28415.1| hypothetical protein AND_03673 [Anopheles darlingi] Length = 210 Score = 238 bits (608), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 107/147 (72%), Positives = 128/147 (87%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 + V +D ++ W R GS+ +TFGLACCAVEMM + PRYD++RFG RASPRQ+DV+I Sbjct: 59 WTVARLDDVLNWGRKGSIWPLTFGLACCAVEMMHIAAPRYDMDRFGVVFRASPRQADVII 118 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRI+PVDIYVP Sbjct: 119 VAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVP 178 Query: 158 GCPPTAEALIYGILLLQKKIRRVGNVK 184 GCPPTAEAL+YG+L LQKK++R+ ++ Sbjct: 179 GCPPTAEALLYGVLQLQKKVKRMKTLQ 205 >gi|121609761|ref|YP_997568.1| NADH dehydrogenase subunit B [Verminephrobacter eiseniae EF01-2] gi|218528011|sp|A1WLP3|NUOB_VEREI RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|121554401|gb|ABM58550.1| NADH-quinone oxidoreductase, B subunit [Verminephrobacter eiseniae EF01-2] Length = 159 Score = 238 bits (608), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 113/150 (75%), Positives = 128/150 (85%), Gaps = 1/150 (0%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RAS 89 + +GF+ TS D +V WA+TGSL MTFGLACCAVEM+ ++ RYDL RFG RAS Sbjct: 3 ENVMKEGFITTSYDSVVNWAKTGSLWPMTFGLACCAVEMIHSAAARYDLARFGAEVFRAS 62 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQ+D+MIVAGTL NKMA ALR+VYDQM EPR+V+SMGSCANGGGYYHYSYSVVRGCDRI Sbjct: 63 PRQADLMIVAGTLCNKMAPALRKVYDQMSEPRWVLSMGSCANGGGYYHYSYSVVRGCDRI 122 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRR 179 VPVD+YVPGCPPTAEALIYGIL LQ+KIRR Sbjct: 123 VPVDVYVPGCPPTAEALIYGILQLQQKIRR 152 >gi|328769253|gb|EGF79297.1| hypothetical protein BATDEDRAFT_12186 [Batrachochytrium dendrobatidis JAM81] Length = 170 Score = 238 bits (607), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 110/147 (74%), Positives = 127/147 (86%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 F++TS+D LV W RT S+ +TFGLACCAVEMM + PRYD +R G RASPRQ+DV+I Sbjct: 19 FVLTSLDSLVNWNRTSSIWPLTFGLACCAVEMMHMATPRYDQDRLGIVFRASPRQADVLI 78 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGTLTNKMA ALR++YDQMP PR+VISMGSCANGGGYYHYSYSVVRGCDRI+PVDIYVP Sbjct: 79 VAGTLTNKMAPALRKIYDQMPSPRWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVP 138 Query: 158 GCPPTAEALIYGILLLQKKIRRVGNVK 184 GCPPT+EAL+YG+L LQKK+RR VK Sbjct: 139 GCPPTSEALLYGVLQLQKKMRRERVVK 165 >gi|307109384|gb|EFN57622.1| hypothetical protein CHLNCDRAFT_21383 [Chlorella variabilis] Length = 160 Score = 238 bits (607), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 112/147 (76%), Positives = 123/147 (83%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 F+V+ VDQLV WAR S+ MTFGLACCAVEMM RYD +RFG R SPRQSD MI Sbjct: 9 FVVSKVDQLVNWARRSSIWPMTFGLACCAVEMMHTGAARYDFDRFGIIFRPSPRQSDCMI 68 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGTLTNKMA ALR+VYDQMPEPR+V+SMGSCANGGGYYHYSY+VVRGCDRIVPVDIYVP Sbjct: 69 VAGTLTNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYAVVRGCDRIVPVDIYVP 128 Query: 158 GCPPTAEALIYGILLLQKKIRRVGNVK 184 GCPPTAEAL+YG+L LQKKI R + Sbjct: 129 GCPPTAEALLYGMLQLQKKIGRTKKTQ 155 >gi|56416679|ref|YP_153753.1| NADH dehydrogenase subunit B [Anaplasma marginale str. St. Maries] gi|269958902|ref|YP_003328691.1| NADH dehydrogenase subunit B [Anaplasma centrale str. Israel] gi|81359162|sp|Q5PB32|NUOB_ANAMM RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|56387911|gb|AAV86498.1| NADH dehydrogenase I chain B [Anaplasma marginale str. St. Maries] gi|269848733|gb|ACZ49377.1| NADH dehydrogenase subunit B [Anaplasma centrale str. Israel] Length = 175 Score = 238 bits (607), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 118/151 (78%), Positives = 130/151 (86%), Gaps = 5/151 (3%) Query: 36 KGFLVTS----VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPR 91 +GF+VT VD +V W+R+GSL MTFGLACCAVEMM + RYDL+R+G RASPR Sbjct: 20 RGFVVTKFSDLVDSVVRWSRSGSLWPMTFGLACCAVEMMHTAASRYDLDRYGVMFRASPR 79 Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151 Q+DVMIVAGTLTNKMA ALRRVYDQM EP+YVISMGSCANGGGYYHYSYSVVRGCDRIVP Sbjct: 80 QADVMIVAGTLTNKMAPALRRVYDQMAEPKYVISMGSCANGGGYYHYSYSVVRGCDRIVP 139 Query: 152 VDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182 VDIYVPGCPPTAEAL+YGIL LQ+KI R GN Sbjct: 140 VDIYVPGCPPTAEALLYGILCLQQKIIR-GN 169 >gi|225718368|gb|ACO15030.1| NADH dehydrogenase iron-sulfur protein 7, mitochondrial precursor [Caligus clemensi] Length = 211 Score = 238 bits (607), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 116/177 (65%), Positives = 137/177 (77%), Gaps = 9/177 (5%) Query: 8 QKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAV 67 +K ISGQ S R+ + ++V +D L+ W R SL +TFGLACCAV Sbjct: 39 EKDISGQYSPF---------RVDIKKNKAEYVVARLDDLINWGRKTSLWPLTFGLACCAV 89 Query: 68 EMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMG 127 EMM + PRYD++R+G RASPRQ+DV++VAGTLTNKMA A R+VYDQM EPR+VISMG Sbjct: 90 EMMHIAAPRYDMDRYGVVFRASPRQADVILVAGTLTNKMAPAFRKVYDQMLEPRWVISMG 149 Query: 128 SCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 SCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQKKI+R+ NV+ Sbjct: 150 SCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALMYGILQLQKKIKRMKNVQ 206 >gi|114777362|ref|ZP_01452359.1| NADH dehydrogenase subunit B [Mariprofundus ferrooxydans PV-1] gi|114552144|gb|EAU54646.1| NADH dehydrogenase subunit B [Mariprofundus ferrooxydans PV-1] Length = 158 Score = 238 bits (607), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 111/151 (73%), Positives = 125/151 (82%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 + KGF+ T+ D+L+ AR GSL MTFGLACCAVEMM A RYDL+RFG R SPRQ Sbjct: 6 VLEKGFITTTADKLINGARAGSLWPMTFGLACCAVEMMHAGASRYDLDRFGIVFRPSPRQ 65 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 SDVM+VAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSYSV RGCDRIVPV Sbjct: 66 SDVMVVAGTLCNKMAPALRKVYDQMSEPRWVISMGSCANGGGYYHYSYSVTRGCDRIVPV 125 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 DIYVPGCPPTAEAL+YG + LQ+KI+R + Sbjct: 126 DIYVPGCPPTAEALLYGFIQLQEKIKRTNTI 156 >gi|297604806|ref|NP_001056143.2| Os05g0533700 [Oryza sativa Japonica Group] gi|255676519|dbj|BAF18057.2| Os05g0533700 [Oryza sativa Japonica Group] Length = 154 Score = 238 bits (607), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 112/142 (78%), Positives = 122/142 (85%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 F+++ VD L+ WAR GS+ MTFGLACCAVEMM RYD +RFG R SPRQSD MI Sbjct: 3 FVISKVDDLMNWARRGSIWPMTFGLACCAVEMMHTGASRYDFDRFGVIFRPSPRQSDCMI 62 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP Sbjct: 63 VAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 122 Query: 158 GCPPTAEALIYGILLLQKKIRR 179 GCPPTAEAL+YG+L LQKKI R Sbjct: 123 GCPPTAEALLYGVLQLQKKINR 144 >gi|195457088|ref|XP_002075420.1| GK17823 [Drosophila willistoni] gi|194171505|gb|EDW86406.1| GK17823 [Drosophila willistoni] Length = 229 Score = 238 bits (607), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 106/142 (74%), Positives = 126/142 (88%) Query: 43 VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL 102 +D L+ W R GS+ +TFGLACCAVEMM + PRYD++R+G RASPRQ+DV+IVAGTL Sbjct: 83 LDDLLNWGRKGSIWPLTFGLACCAVEMMHIAAPRYDMDRYGVVFRASPRQADVIIVAGTL 142 Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162 TNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRI+PVDIYVPGCPPT Sbjct: 143 TNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPT 202 Query: 163 AEALIYGILLLQKKIRRVGNVK 184 AEAL+YG+L LQKK++R+ ++ Sbjct: 203 AEALMYGVLQLQKKVKRMKTLQ 224 >gi|145612619|ref|XP_001412223.1| mitochondrial NADH-ubiquinone oxidoreductase 20 kD subunit [Magnaporthe oryzae 70-15] gi|145019756|gb|EDK03984.1| mitochondrial NADH-ubiquinone oxidoreductase 20 kD subunit [Magnaporthe oryzae 70-15] Length = 222 Score = 238 bits (607), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 115/172 (66%), Positives = 134/172 (77%), Gaps = 3/172 (1%) Query: 10 IISGQSSCSLEKVDADFSRISSEITHKG---FLVTSVDQLVTWARTGSLMWMTFGLACCA 66 + + QSS L + + + S+ KG + +T++D + W R SL MTFGLACCA Sbjct: 40 VPAAQSSTGLARPERKEVPLPSQEGTKGVVQYALTTLDIIANWGRQSSLWPMTFGLACCA 99 Query: 67 VEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISM 126 VEMM S PRYD +R G RASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPR+VISM Sbjct: 100 VEMMHLSTPRYDQDRLGIIFRASPRQSDVMIVAGTLTNKMAPALRQVYDQMPEPRWVISM 159 Query: 127 GSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 GSCANGGGYYHYSYSVVRGCDRIVPVD+YVPGCPPT+EAL+YGI LQ+K+R Sbjct: 160 GSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTSEALMYGIFQLQRKMR 211 >gi|330913880|ref|XP_003296406.1| hypothetical protein PTT_06502 [Pyrenophora teres f. teres 0-1] gi|311331451|gb|EFQ95498.1| hypothetical protein PTT_06502 [Pyrenophora teres f. teres 0-1] Length = 230 Score = 238 bits (607), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 113/155 (72%), Positives = 127/155 (81%), Gaps = 3/155 (1%) Query: 29 ISSEITHKG---FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA 85 + S+ KG + +T++DQ+ WAR SL MTFGLACCAVEMM S PRYD +R G Sbjct: 67 LPSQEGKKGAMQYALTTLDQVANWARQSSLWPMTFGLACCAVEMMHLSTPRYDQDRLGII 126 Query: 86 PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRG 145 RASPRQSDVMIVAGTLTNKMA ALR+VYDQMP+PR+VISMGSCANGGGYYHYSYSV RG Sbjct: 127 FRASPRQSDVMIVAGTLTNKMAPALRQVYDQMPDPRWVISMGSCANGGGYYHYSYSVTRG 186 Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 CDRIVPVDIYVPGCPPTAEAL+YG+ LQKK+R Sbjct: 187 CDRIVPVDIYVPGCPPTAEALMYGVFQLQKKMRHT 221 >gi|332375552|gb|AEE62917.1| unknown [Dendroctonus ponderosae] Length = 227 Score = 238 bits (607), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 107/147 (72%), Positives = 126/147 (85%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 + + +D L+ W R GS+ +TFGLACCAVEMM + PRYD++R+G RASPRQ+D +I Sbjct: 76 YALARLDDLLNWGRKGSVWPLTFGLACCAVEMMHIAAPRYDMDRYGVVFRASPRQADCII 135 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRI+PVDIYVP Sbjct: 136 VAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVP 195 Query: 158 GCPPTAEALIYGILLLQKKIRRVGNVK 184 GCPPTAEAL+YG+L LQKKI+R V+ Sbjct: 196 GCPPTAEALMYGVLQLQKKIKRYNTVQ 222 >gi|261197135|ref|XP_002624970.1| NADH-ubiquinone oxidoreductase subunit B [Ajellomyces dermatitidis SLH14081] gi|239595600|gb|EEQ78181.1| NADH-ubiquinone oxidoreductase subunit B [Ajellomyces dermatitidis SLH14081] gi|239606495|gb|EEQ83482.1| NADH-ubiquinone oxidoreductase subunit B [Ajellomyces dermatitidis ER-3] gi|327356325|gb|EGE85182.1| NADH-ubiquinone oxidoreductase subunit B [Ajellomyces dermatitidis ATCC 18188] Length = 223 Score = 238 bits (607), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 111/143 (77%), Positives = 122/143 (85%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 F +T++DQ+ WAR SL MTFGLACCAVEMM S PRYD +R G RASPRQSDVMI Sbjct: 72 FALTTLDQVTNWARQSSLWPMTFGLACCAVEMMHLSTPRYDQDRLGIIFRASPRQSDVMI 131 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGTLTNKMA ALR+VYDQMP+PR+VISMGSCANGGGYYHYSYSV RGCDRIVPVDIYVP Sbjct: 132 VAGTLTNKMAPALRQVYDQMPDPRWVISMGSCANGGGYYHYSYSVTRGCDRIVPVDIYVP 191 Query: 158 GCPPTAEALIYGILLLQKKIRRV 180 GCPPT+EAL+YGI LQKK+R Sbjct: 192 GCPPTSEALMYGIFQLQKKMRHT 214 >gi|116201555|ref|XP_001226589.1| hypothetical protein CHGG_08662 [Chaetomium globosum CBS 148.51] gi|88177180|gb|EAQ84648.1| hypothetical protein CHGG_08662 [Chaetomium globosum CBS 148.51] Length = 223 Score = 238 bits (606), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 115/163 (70%), Positives = 131/163 (80%), Gaps = 3/163 (1%) Query: 19 LEKVDADFSRISSEITHKG---FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMP 75 L K D + S+ KG + +T++D + WAR GSL MTFGLACCAVEMM S P Sbjct: 50 LAKPDRKEVPLPSQEPTKGLVQYALTTLDIMTNWARQGSLWPMTFGLACCAVEMMHLSAP 109 Query: 76 RYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY 135 RYD +R G RASPRQSDVMIVAGTLTNKMA ALR+VYDQMP+PR+VISMGSCANGGGY Sbjct: 110 RYDQDRLGIIFRASPRQSDVMIVAGTLTNKMAPALRQVYDQMPDPRWVISMGSCANGGGY 169 Query: 136 YHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 YHYSYSVVRGCDRIVPVD+YVPGCPPT+EAL+YGI LQ+K+R Sbjct: 170 YHYSYSVVRGCDRIVPVDVYVPGCPPTSEALMYGIFQLQRKMR 212 >gi|195123641|ref|XP_002006312.1| GI18637 [Drosophila mojavensis] gi|193911380|gb|EDW10247.1| GI18637 [Drosophila mojavensis] Length = 223 Score = 237 bits (605), Expect = 5e-61, Method: Compositional matrix adjust. Identities = 106/142 (74%), Positives = 126/142 (88%) Query: 43 VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL 102 +D L+ W R GS+ +TFGLACCAVEMM + PRYD++R+G RASPRQ+DV+IVAGTL Sbjct: 77 LDDLLNWGRKGSIWPLTFGLACCAVEMMHIAAPRYDMDRYGVVFRASPRQADVIIVAGTL 136 Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162 TNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRI+PVDIYVPGCPPT Sbjct: 137 TNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPT 196 Query: 163 AEALIYGILLLQKKIRRVGNVK 184 AEAL+YG+L LQKK++R+ ++ Sbjct: 197 AEALMYGVLQLQKKVKRMKTLQ 218 >gi|167841106|ref|ZP_02467790.1| NADH dehydrogenase subunit B [Burkholderia thailandensis MSMB43] Length = 167 Score = 237 bits (605), Expect = 5e-61, Method: Compositional matrix adjust. Identities = 108/145 (74%), Positives = 126/145 (86%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 + GF+VT++D + A+ SL +MTFGLACCAVEMM A+ RYD++RFG PRASPRQ Sbjct: 8 LEKDGFIVTTLDAAMAAAQKNSLWYMTFGLACCAVEMMHAAGARYDMDRFGMIPRASPRQ 67 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 D+MIVAGTLTNKMA A+RRVYDQM EPRYV+SMGSCANGGGYYHYSYSVVRGCDRIVPV Sbjct: 68 CDLMIVAGTLTNKMAPAMRRVYDQMAEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPV 127 Query: 153 DIYVPGCPPTAEALIYGILLLQKKI 177 DIYVPGCPPTAEAL+YG++ LQ+K+ Sbjct: 128 DIYVPGCPPTAEALVYGLMQLQRKV 152 >gi|307611657|emb|CBX01348.1| NADH dehydrogenase I chain B [Legionella pneumophila 130b] Length = 146 Score = 237 bits (605), Expect = 5e-61, Method: Compositional matrix adjust. Identities = 112/140 (80%), Positives = 124/140 (88%) Query: 40 VTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVA 99 +T+V++LV WAR+GS+ MTFGLACCAVEMM RYDL+RFG R SPRQSDVMIVA Sbjct: 1 MTTVEKLVGWARSGSMWPMTFGLACCAVEMMHVGAARYDLDRFGIIFRPSPRQSDVMIVA 60 Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGC 159 GTL NKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVD+YVPGC Sbjct: 61 GTLCNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGC 120 Query: 160 PPTAEALIYGILLLQKKIRR 179 PPTAEAL+YGI+ LQ KIRR Sbjct: 121 PPTAEALLYGIIQLQNKIRR 140 >gi|170092259|ref|XP_001877351.1| predicted protein [Laccaria bicolor S238N-H82] gi|164647210|gb|EDR11454.1| predicted protein [Laccaria bicolor S238N-H82] Length = 191 Score = 237 bits (605), Expect = 5e-61, Method: Compositional matrix adjust. Identities = 111/154 (72%), Positives = 131/154 (85%), Gaps = 2/154 (1%) Query: 28 RISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA 85 ++S E G ++++++D++ WAR GS+ MTFGLACCAVEMM + RYD +R G Sbjct: 28 QLSLEQPQNGAEYVLSTLDKVTNWARQGSMWPMTFGLACCAVEMMHMAAARYDQDRLGVV 87 Query: 86 PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRG 145 RASPRQSD+MIVAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRG Sbjct: 88 FRASPRQSDIMIVAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRG 147 Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179 CDRIVPVDIYVPGCPPTAEAL+YG+L LQ+K+RR Sbjct: 148 CDRIVPVDIYVPGCPPTAEALLYGMLQLQRKMRR 181 >gi|195381615|ref|XP_002049543.1| GJ21650 [Drosophila virilis] gi|194144340|gb|EDW60736.1| GJ21650 [Drosophila virilis] Length = 223 Score = 237 bits (604), Expect = 6e-61, Method: Compositional matrix adjust. Identities = 106/142 (74%), Positives = 126/142 (88%) Query: 43 VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL 102 +D L+ W R GS+ +TFGLACCAVEMM + PRYD++R+G RASPRQ+DV+IVAGTL Sbjct: 77 LDDLLNWGRKGSIWPLTFGLACCAVEMMHIAAPRYDMDRYGVVFRASPRQADVIIVAGTL 136 Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162 TNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRI+PVDIYVPGCPPT Sbjct: 137 TNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPT 196 Query: 163 AEALIYGILLLQKKIRRVGNVK 184 AEAL+YG+L LQKK++R+ ++ Sbjct: 197 AEALLYGVLQLQKKVKRMRTLQ 218 >gi|322694377|gb|EFY86208.1| mitochondrial NADH-ubiquinone oxidoreductase 20 kD subunit [Metarhizium acridum CQMa 102] Length = 367 Score = 237 bits (604), Expect = 6e-61, Method: Compositional matrix adjust. Identities = 113/153 (73%), Positives = 127/153 (83%), Gaps = 3/153 (1%) Query: 29 ISSEITHKG---FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA 85 + SE KG + +T++D + WAR SL MTFGLACCAVEMM S PRYD +R G Sbjct: 204 LPSEEGTKGVVQYALTTLDVIANWARQSSLWPMTFGLACCAVEMMHLSTPRYDQDRLGII 263 Query: 86 PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRG 145 RASPRQSDVMIVAGTLTNKMA ALR+VYDQMP+PR+VISMGSCANGGGYYHYSYSVVRG Sbjct: 264 FRASPRQSDVMIVAGTLTNKMAPALRQVYDQMPDPRWVISMGSCANGGGYYHYSYSVVRG 323 Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 CDRIVPVDIYVPGCPPT+EAL+YGI LQ+K+R Sbjct: 324 CDRIVPVDIYVPGCPPTSEALMYGIFQLQRKMR 356 >gi|290562629|gb|ADD38710.1| NADH dehydrogenase iron-sulfur protein 7, mitochondrial [Lepeophtheirus salmonis] Length = 211 Score = 237 bits (604), Expect = 6e-61, Method: Compositional matrix adjust. Identities = 109/147 (74%), Positives = 127/147 (86%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 ++V +D L+ W R SL +TFGLACCAVEMM + PRYD++R+G RASPRQ+DV++ Sbjct: 60 YVVARLDDLINWGRKTSLWPLTFGLACCAVEMMHIAAPRYDMDRYGVVFRASPRQADVIL 119 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGTLTNKMA A R+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP Sbjct: 120 VAGTLTNKMAPAFRKVYDQMLEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 179 Query: 158 GCPPTAEALIYGILLLQKKIRRVGNVK 184 GCPPTAEAL+YGIL LQKKI+R+ NV+ Sbjct: 180 GCPPTAEALMYGILQLQKKIKRMKNVQ 206 >gi|255067282|ref|ZP_05319137.1| NADH dehydrogenase, B subunit [Neisseria sicca ATCC 29256] gi|261364348|ref|ZP_05977231.1| NADH dehydrogenase, B subunit [Neisseria mucosa ATCC 25996] gi|261378539|ref|ZP_05983112.1| NADH dehydrogenase, B subunit [Neisseria cinerea ATCC 14685] gi|255048433|gb|EET43897.1| NADH dehydrogenase, B subunit [Neisseria sicca ATCC 29256] gi|269145089|gb|EEZ71507.1| NADH dehydrogenase, B subunit [Neisseria cinerea ATCC 14685] gi|288567612|gb|EFC89172.1| NADH dehydrogenase, B subunit [Neisseria mucosa ATCC 25996] Length = 160 Score = 237 bits (604), Expect = 6e-61, Method: Compositional matrix adjust. Identities = 109/151 (72%), Positives = 128/151 (84%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 + KGF+ TS D ++ + RTGSL +TFGLACCAVEMM A M RYDL+RFG R SPRQ Sbjct: 6 VLKKGFITTSADTVLNYMRTGSLWPVTFGLACCAVEMMHAGMARYDLDRFGIIFRPSPRQ 65 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 +D+MIVAGTLTNKMA ALRRVYDQ+ EPR+V+SMGSCANGGGYYHYSYSVVRG DR+VPV Sbjct: 66 ADLMIVAGTLTNKMAPALRRVYDQLAEPRWVLSMGSCANGGGYYHYSYSVVRGADRVVPV 125 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 D+YVPGCPPTAEALIYG++ LQ+KI+R + Sbjct: 126 DVYVPGCPPTAEALIYGLMQLQQKIKRTSTI 156 >gi|126002095|ref|XP_001352261.1| GA21592 [Drosophila pseudoobscura pseudoobscura] gi|195175510|ref|XP_002028490.1| GL16625 [Drosophila persimilis] gi|54640648|gb|EAL29409.1| GA21592 [Drosophila pseudoobscura pseudoobscura] gi|194103687|gb|EDW25730.1| GL16625 [Drosophila persimilis] Length = 220 Score = 237 bits (604), Expect = 6e-61, Method: Compositional matrix adjust. Identities = 106/145 (73%), Positives = 127/145 (87%) Query: 40 VTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVA 99 + +D L+ W R GS+ +TFGLACCAVEMM + PRYD++R+G RASPRQ+DV+IVA Sbjct: 71 LARLDDLLNWGRKGSIWPLTFGLACCAVEMMHIAAPRYDMDRYGVVFRASPRQADVIIVA 130 Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGC 159 GTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRI+PVDIYVPGC Sbjct: 131 GTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVPGC 190 Query: 160 PPTAEALIYGILLLQKKIRRVGNVK 184 PPTAEAL+YG+L LQKK++R+ ++ Sbjct: 191 PPTAEALMYGVLQLQKKVKRMKTLQ 215 >gi|255956935|ref|XP_002569220.1| Pc21g22510 [Penicillium chrysogenum Wisconsin 54-1255] gi|211590931|emb|CAP97148.1| Pc21g22510 [Penicillium chrysogenum Wisconsin 54-1255] Length = 222 Score = 237 bits (604), Expect = 7e-61, Method: Compositional matrix adjust. Identities = 109/143 (76%), Positives = 125/143 (87%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 +++TS+D + WAR GSL ++FGLACCAVEMM SMPRYD +R G RASPRQSDVMI Sbjct: 71 YVLTSLDGIANWARQGSLWPLSFGLACCAVEMMHLSMPRYDQDRLGIIFRASPRQSDVMI 130 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGT+TNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRG DR++PVDIY+P Sbjct: 131 VAGTVTNKMAPALRQVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGVDRLIPVDIYLP 190 Query: 158 GCPPTAEALIYGILLLQKKIRRV 180 GCPPTAEAL+YGI LQKK+RR Sbjct: 191 GCPPTAEALMYGIFQLQKKMRRT 213 >gi|189196624|ref|XP_001934650.1| NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial precursor [Pyrenophora tritici-repentis Pt-1C-BFP] gi|187980529|gb|EDU47155.1| NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial precursor [Pyrenophora tritici-repentis Pt-1C-BFP] Length = 209 Score = 237 bits (604), Expect = 7e-61, Method: Compositional matrix adjust. Identities = 113/155 (72%), Positives = 127/155 (81%), Gaps = 3/155 (1%) Query: 29 ISSEITHKG---FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA 85 + S+ KG + +T++DQ+ WAR SL MTFGLACCAVEMM S PRYD +R G Sbjct: 46 LPSQEGKKGAMQYALTTLDQVANWARQSSLWPMTFGLACCAVEMMHLSTPRYDQDRLGII 105 Query: 86 PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRG 145 RASPRQSDVMIVAGTLTNKMA ALR+VYDQMP+PR+VISMGSCANGGGYYHYSYSV RG Sbjct: 106 FRASPRQSDVMIVAGTLTNKMAPALRQVYDQMPDPRWVISMGSCANGGGYYHYSYSVTRG 165 Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 CDRIVPVDIYVPGCPPTAEAL+YG+ LQKK+R Sbjct: 166 CDRIVPVDIYVPGCPPTAEALMYGVFQLQKKMRHT 200 >gi|85085876|ref|XP_957592.1| NADH:ubiquinone oxidoreductase 19.3kD subunit [Neurospora crassa OR74A] gi|6647651|sp|O47950|NDUS7_NEUCR RecName: Full=NADH-ubiquinone oxidoreductase 19.3 kDa subunit, mitochondrial; AltName: Full=Complex I-19.3kD; Short=CI-19.3kD; Flags: Precursor gi|2764632|emb|CAA04802.1| 19.3kD iron-sulfur subunit of mitochondrial complex I [Neurospora crassa] gi|28918685|gb|EAA28356.1| NADH:ubiquinone oxidoreductase 19.3kD subunit [Neurospora crassa OR74A] gi|40882330|emb|CAF06152.1| NADH-ubiquinone oxidoreductase 19.3 kDa subunit, mitochondrial precursor [Neurospora crassa] Length = 226 Score = 236 bits (603), Expect = 7e-61, Method: Compositional matrix adjust. Identities = 110/141 (78%), Positives = 123/141 (87%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 + +T++D +V WAR SL MTFGLACCAVEMM S PRYD +R G RASPRQSDVMI Sbjct: 75 YALTTLDSIVNWARQSSLWPMTFGLACCAVEMMHLSTPRYDQDRLGIIFRASPRQSDVMI 134 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGTLTNKMA ALR+VYDQMP+PR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP Sbjct: 135 VAGTLTNKMAPALRQVYDQMPDPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 194 Query: 158 GCPPTAEALIYGILLLQKKIR 178 GCPPT+EAL+YGI LQ+K+R Sbjct: 195 GCPPTSEALMYGIFQLQRKMR 215 >gi|29654738|ref|NP_820430.1| NADH dehydrogenase subunit B [Coxiella burnetii RSA 493] gi|153207226|ref|ZP_01945990.1| NADH dehydrogenase (ubiquinone), B subunit [Coxiella burnetii 'MSU Goat Q177'] gi|154706106|ref|YP_001423957.1| NADH dehydrogenase subunit B [Coxiella burnetii Dugway 5J108-111] gi|161830495|ref|YP_001597292.1| NADH dehydrogenase subunit B [Coxiella burnetii RSA 331] gi|165918784|ref|ZP_02218870.1| NADH dehydrogenase (ubiquinone), B subunit [Coxiella burnetii RSA 334] gi|212212183|ref|YP_002303119.1| NADH dehydrogenase subunit B [Coxiella burnetii CbuG_Q212] gi|212218213|ref|YP_002305000.1| NADH dehydrogenase subunit B [Coxiella burnetii CbuK_Q154] gi|81628735|sp|Q83BQ6|NUOB_COXBU RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|218527985|sp|A9KBK5|NUOB_COXBN RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|218527986|sp|A9N8X2|NUOB_COXBR RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|238055289|sp|B6J695|NUOB_COXB1 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|238055290|sp|B6IZ46|NUOB_COXB2 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|29542006|gb|AAO90944.1| NADH-quinone oxidoreductase chain B [Coxiella burnetii RSA 493] gi|120576714|gb|EAX33338.1| NADH dehydrogenase (ubiquinone), B subunit [Coxiella burnetii 'MSU Goat Q177'] gi|154355392|gb|ABS76854.1| NADH-quinone oxidoreductase chain B [Coxiella burnetii Dugway 5J108-111] gi|161762362|gb|ABX78004.1| NADH dehydrogenase (ubiquinone), B subunit [Coxiella burnetii RSA 331] gi|165917508|gb|EDR36112.1| NADH dehydrogenase (ubiquinone), B subunit [Coxiella burnetii RSA 334] gi|212010593|gb|ACJ17974.1| NADH-quinone oxidoreductase chain B [Coxiella burnetii CbuG_Q212] gi|212012475|gb|ACJ19855.1| NADH-quinone oxidoreductase chain B [Coxiella burnetii CbuK_Q154] Length = 161 Score = 236 bits (603), Expect = 7e-61, Method: Compositional matrix adjust. Identities = 114/147 (77%), Positives = 128/147 (87%), Gaps = 1/147 (0%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPR 91 +T +GFL+TS+D L+ WAR+GSL MTFGLACCAVEMMQ + RYDL+RFG R SPR Sbjct: 5 LTKEGFLLTSLDDLMRWARSGSLWPMTFGLACCAVEMMQCASSRYDLDRFGAGLFRPSPR 64 Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151 QSDVMIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHY+YSVVRGCDRIVP Sbjct: 65 QSDVMIVAGTLCNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYAYSVVRGCDRIVP 124 Query: 152 VDIYVPGCPPTAEALIYGILLLQKKIR 178 VD+YVPGCPPTAEAL YGI+ L+ KIR Sbjct: 125 VDVYVPGCPPTAEALFYGIMQLRNKIR 151 >gi|15676166|ref|NP_273298.1| NADH dehydrogenase subunit B [Neisseria meningitidis MC58] gi|121634114|ref|YP_974359.1| NADH dehydrogenase subunit B [Neisseria meningitidis FAM18] gi|194099646|ref|YP_002002777.1| NADH dehydrogenase subunit B [Neisseria gonorrhoeae NCCP11945] gi|225077017|ref|ZP_03720216.1| hypothetical protein NEIFLAOT_02069 [Neisseria flavescens NRL30031/H210] gi|239999843|ref|ZP_04719767.1| NADH dehydrogenase subunit B [Neisseria gonorrhoeae 35/02] gi|240015002|ref|ZP_04721915.1| NADH dehydrogenase subunit B [Neisseria gonorrhoeae DGI18] gi|240081589|ref|ZP_04726132.1| NADH dehydrogenase subunit B [Neisseria gonorrhoeae FA19] gi|240113871|ref|ZP_04728361.1| NADH dehydrogenase subunit B [Neisseria gonorrhoeae MS11] gi|240116602|ref|ZP_04730664.1| NADH dehydrogenase subunit B [Neisseria gonorrhoeae PID18] gi|240118826|ref|ZP_04732888.1| NADH dehydrogenase subunit B [Neisseria gonorrhoeae PID1] gi|240122071|ref|ZP_04735033.1| NADH dehydrogenase subunit B [Neisseria gonorrhoeae PID24-1] gi|240124365|ref|ZP_04737321.1| NADH dehydrogenase subunit B [Neisseria gonorrhoeae PID332] gi|240126577|ref|ZP_04739463.1| NADH dehydrogenase subunit B [Neisseria gonorrhoeae SK-92-679] gi|241760743|ref|ZP_04758835.1| NADH-quinone oxidoreductase, b subunit [Neisseria flavescens SK114] gi|254494626|ref|ZP_05107797.1| NADH dehydrogenase subunit I B [Neisseria gonorrhoeae 1291] gi|254805716|ref|YP_003083937.1| NADH dehydrogenase I chain B [Neisseria meningitidis alpha14] gi|260439637|ref|ZP_05793453.1| NADH dehydrogenase subunit B [Neisseria gonorrhoeae DGI2] gi|261379579|ref|ZP_05984152.1| NADH dehydrogenase, B subunit [Neisseria subflava NJ9703] gi|261400470|ref|ZP_05986595.1| NADH dehydrogenase, B subunit [Neisseria lactamica ATCC 23970] gi|268595653|ref|ZP_06129820.1| NADH-quinone oxidoreductase subunit B [Neisseria gonorrhoeae 35/02] gi|268597685|ref|ZP_06131852.1| NADH-quinone oxidoreductase subunit B [Neisseria gonorrhoeae FA19] gi|268599937|ref|ZP_06134104.1| NADH dehydrogenase subunit I B [Neisseria gonorrhoeae MS11] gi|268602271|ref|ZP_06136438.1| NADH dehydrogenase subunit I B [Neisseria gonorrhoeae PID18] gi|268604537|ref|ZP_06138704.1| NADH dehydrogenase subunit I B [Neisseria gonorrhoeae PID1] gi|268682992|ref|ZP_06149854.1| NADH dehydrogenase subunit I B [Neisseria gonorrhoeae PID332] gi|268685157|ref|ZP_06152019.1| NADH dehydrogenase subunit I B [Neisseria gonorrhoeae SK-92-679] gi|296313746|ref|ZP_06863687.1| NADH dehydrogenase, B subunit [Neisseria polysaccharea ATCC 43768] gi|304389067|ref|ZP_07371111.1| NADH-quinone oxidoreductase subunit B [Neisseria meningitidis ATCC 13091] gi|313669285|ref|YP_004049569.1| NADH dehydrogenase I chain B [Neisseria lactamica ST-640] gi|319638815|ref|ZP_07993573.1| NADH dehydrogenase subunit I B [Neisseria mucosa C102] gi|81785111|sp|Q9K1C2|NUOB_NEIMB RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|218527996|sp|B4RPI3|NUOB_NEIG2 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|218527998|sp|A1KRS3|NUOB_NEIMF RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|7225464|gb|AAF40696.1| NADH dehydrogenase I, B subunit [Neisseria meningitidis MC58] gi|120865820|emb|CAM09552.1| NADH dehydrogenase I chain B [Neisseria meningitidis FAM18] gi|193934936|gb|ACF30760.1| NADH dehydrogenase I, B subunit [Neisseria gonorrhoeae NCCP11945] gi|224951574|gb|EEG32783.1| hypothetical protein NEIFLAOT_02069 [Neisseria flavescens NRL30031/H210] gi|226513666|gb|EEH63011.1| NADH dehydrogenase subunit I B [Neisseria gonorrhoeae 1291] gi|241318924|gb|EER55450.1| NADH-quinone oxidoreductase, b subunit [Neisseria flavescens SK114] gi|254669258|emb|CBA08154.1| NADH dehydrogenase I chain B [Neisseria meningitidis alpha14] gi|261391774|emb|CAX49229.1| NADH-quinone oxidoreductase chain B (NADH dehydrogenase I, chain B; NDH-1, chain B) [Neisseria meningitidis 8013] gi|268549042|gb|EEZ44460.1| NADH-quinone oxidoreductase subunit B [Neisseria gonorrhoeae 35/02] gi|268551473|gb|EEZ46492.1| NADH-quinone oxidoreductase subunit B [Neisseria gonorrhoeae FA19] gi|268584068|gb|EEZ48744.1| NADH dehydrogenase subunit I B [Neisseria gonorrhoeae MS11] gi|268586402|gb|EEZ51078.1| NADH dehydrogenase subunit I B [Neisseria gonorrhoeae PID18] gi|268588668|gb|EEZ53344.1| NADH dehydrogenase subunit I B [Neisseria gonorrhoeae PID1] gi|268623276|gb|EEZ55676.1| NADH dehydrogenase subunit I B [Neisseria gonorrhoeae PID332] gi|268625441|gb|EEZ57841.1| NADH dehydrogenase subunit I B [Neisseria gonorrhoeae SK-92-679] gi|269209729|gb|EEZ76184.1| NADH dehydrogenase, B subunit [Neisseria lactamica ATCC 23970] gi|284798053|gb|EFC53400.1| NADH dehydrogenase, B subunit [Neisseria subflava NJ9703] gi|296839669|gb|EFH23607.1| NADH dehydrogenase, B subunit [Neisseria polysaccharea ATCC 43768] gi|304336940|gb|EFM03130.1| NADH-quinone oxidoreductase subunit B [Neisseria meningitidis ATCC 13091] gi|308388462|gb|ADO30782.1| NADH dehydrogenase I chain B [Neisseria meningitidis alpha710] gi|309379802|emb|CBX21578.1| unnamed protein product [Neisseria lactamica Y92-1009] gi|313006747|emb|CBN88217.1| NADH dehydrogenase I chain B [Neisseria lactamica 020-06] gi|316985170|gb|EFV64122.1| NADH-quinone oxidoreductase, B subunit [Neisseria meningitidis H44/76] gi|317165131|gb|ADV08672.1| NADH dehydrogenase subunit B [Neisseria gonorrhoeae TCDC-NG08107] gi|317399719|gb|EFV80382.1| NADH dehydrogenase subunit I B [Neisseria mucosa C102] gi|319411275|emb|CBY91682.1| NADH-quinone oxidoreductase chain B (NADH dehydrogenase I, chain B; NDH-1, chain B) [Neisseria meningitidis WUE 2594] gi|325129040|gb|EGC51890.1| NADH:ubiquinone dehydrogenase, B subunit [Neisseria meningitidis N1568] gi|325130970|gb|EGC53697.1| NADH:ubiquinone dehydrogenase, B subunit [Neisseria meningitidis OX99.30304] gi|325131612|gb|EGC54319.1| NADH:ubiquinone dehydrogenase, B subunit [Neisseria meningitidis M6190] gi|325135045|gb|EGC57673.1| NADH:ubiquinone dehydrogenase, B subunit [Neisseria meningitidis M13399] gi|325137069|gb|EGC59665.1| NADH:ubiquinone dehydrogenase, B subunit [Neisseria meningitidis M0579] gi|325139133|gb|EGC61679.1| NADH:ubiquinone dehydrogenase, B subunit [Neisseria meningitidis ES14902] gi|325141078|gb|EGC63581.1| NADH:ubiquinone dehydrogenase, B subunit [Neisseria meningitidis CU385] gi|325143083|gb|EGC65430.1| NADH:ubiquinone dehydrogenase, B subunit [Neisseria meningitidis 961-5945] gi|325143153|gb|EGC65499.1| NADH:ubiquinone dehydrogenase, B subunit [Neisseria meningitidis 961-5945] gi|325145306|gb|EGC67584.1| NADH:ubiquinone dehydrogenase, B subunit [Neisseria meningitidis M01-240013] gi|325197528|gb|ADY92984.1| NADH:ubiquinone dehydrogenase, B subunit [Neisseria meningitidis G2136] gi|325199445|gb|ADY94900.1| NADH:ubiquinone dehydrogenase, B subunit [Neisseria meningitidis H44/76] gi|325202929|gb|ADY98383.1| NADH:ubiquinone dehydrogenase, B subunit [Neisseria meningitidis M01-240149] gi|325203359|gb|ADY98812.1| NADH:ubiquinone dehydrogenase, B subunit [Neisseria meningitidis M01-240355] gi|325205327|gb|ADZ00780.1| NADH:ubiquinone dehydrogenase, B subunit [Neisseria meningitidis M04-240196] gi|325207273|gb|ADZ02725.1| NADH:ubiquinone dehydrogenase, B subunit [Neisseria meningitidis NZ-05/33] Length = 160 Score = 236 bits (603), Expect = 8e-61, Method: Compositional matrix adjust. Identities = 109/151 (72%), Positives = 128/151 (84%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 + KGF+ TS D ++ + RTGSL +TFGLACCAVEMM A M RYDL+RFG R SPRQ Sbjct: 6 VLKKGFITTSADTVLNYMRTGSLWPVTFGLACCAVEMMHAGMARYDLDRFGIIFRPSPRQ 65 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 +D+MIVAGTLTNKMA ALRRVYDQ+ EPR+V+SMGSCANGGGYYHYSYSVVRG DR+VPV Sbjct: 66 ADLMIVAGTLTNKMAPALRRVYDQLAEPRWVLSMGSCANGGGYYHYSYSVVRGADRVVPV 125 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 D+YVPGCPPTAEALIYG++ LQ+KI+R + Sbjct: 126 DVYVPGCPPTAEALIYGLIQLQQKIKRTSTI 156 >gi|58267664|ref|XP_570988.1| hypothetical protein [Cryptococcus neoformans var. neoformans JEC21] gi|57227222|gb|AAW43681.1| conserved hypothetical protein [Cryptococcus neoformans var. neoformans JEC21] Length = 250 Score = 236 bits (603), Expect = 8e-61, Method: Compositional matrix adjust. Identities = 111/155 (71%), Positives = 131/155 (84%), Gaps = 2/155 (1%) Query: 27 SRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF 84 +++S E G ++++++D++V W R GS+ MTFGLACCAVEMM + RYD +R G Sbjct: 86 NQLSLETPRNGAEYVLSTLDKIVNWGRQGSMWPMTFGLACCAVEMMHMAAARYDQDRLGV 145 Query: 85 APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR 144 RASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVR Sbjct: 146 VFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVR 205 Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179 GCDRIVPVDIYVPGCPPTAEAL+YG+L L +K+RR Sbjct: 206 GCDRIVPVDIYVPGCPPTAEALLYGMLQLMRKMRR 240 >gi|134112065|ref|XP_775568.1| hypothetical protein CNBE2820 [Cryptococcus neoformans var. neoformans B-3501A] gi|50258227|gb|EAL20921.1| hypothetical protein CNBE2820 [Cryptococcus neoformans var. neoformans B-3501A] Length = 250 Score = 236 bits (603), Expect = 8e-61, Method: Compositional matrix adjust. Identities = 111/155 (71%), Positives = 131/155 (84%), Gaps = 2/155 (1%) Query: 27 SRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF 84 +++S E G ++++++D++V W R GS+ MTFGLACCAVEMM + RYD +R G Sbjct: 86 NQLSLETPRNGAEYVLSTLDKIVNWGRQGSMWPMTFGLACCAVEMMHMAAARYDQDRLGV 145 Query: 85 APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR 144 RASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVR Sbjct: 146 VFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVR 205 Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179 GCDRIVPVDIYVPGCPPTAEAL+YG+L L +K+RR Sbjct: 206 GCDRIVPVDIYVPGCPPTAEALLYGMLQLMRKMRR 240 >gi|313227729|emb|CBY22878.1| unnamed protein product [Oikopleura dioica] Length = 228 Score = 236 bits (603), Expect = 9e-61, Method: Compositional matrix adjust. Identities = 114/163 (69%), Positives = 130/163 (79%), Gaps = 2/163 (1%) Query: 21 KVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLE 80 K +AD RI ++ T +D + + SL MTFGLACCAVEMM + PRYD++ Sbjct: 38 KREAD--RIKKFDNKVEYVTTKLDDIKNYISANSLWPMTFGLACCAVEMMHFAAPRYDMD 95 Query: 81 RFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSY 140 RFG RASPRQSD+MIVAGTL+NKMA ALRRVYDQMP PRYV+SMGSCANGGGYYHYSY Sbjct: 96 RFGVVFRASPRQSDLMIVAGTLSNKMAPALRRVYDQMPFPRYVLSMGSCANGGGYYHYSY 155 Query: 141 SVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 SVVRG DRIVPVD+YVPGCPP+AEAL+YGILLLQKKI+R NV Sbjct: 156 SVVRGVDRIVPVDVYVPGCPPSAEALLYGILLLQKKIKRSANV 198 >gi|53717370|ref|YP_105287.1| NADH dehydrogenase subunit B [Burkholderia mallei ATCC 23344] gi|53720672|ref|YP_109658.1| NADH dehydrogenase subunit B [Burkholderia pseudomallei K96243] gi|67640239|ref|ZP_00439053.1| NADH-quinone oxidoreductase chain b (nadh dehydrogenasei, chain b) (ndh-1, chain b) [Burkholderia mallei GB8 horse 4] gi|134283174|ref|ZP_01769875.1| putative NADH-quinone oxidoreductase, B subunit [Burkholderia pseudomallei 305] gi|167004154|ref|ZP_02269924.1| NADH-quinone oxidoreductase, B subunit [Burkholderia mallei PRL-20] gi|167721386|ref|ZP_02404622.1| NADH dehydrogenase subunit B [Burkholderia pseudomallei DM98] gi|167847462|ref|ZP_02472970.1| NADH dehydrogenase subunit B [Burkholderia pseudomallei B7210] gi|167904433|ref|ZP_02491638.1| NADH dehydrogenase subunit B [Burkholderia pseudomallei NCTC 13177] gi|242317299|ref|ZP_04816315.1| putative NADH-quinone oxidoreductase, B subunit [Burkholderia pseudomallei 1106b] gi|254175821|ref|ZP_04882480.1| NADH-quinone oxidoreductase, B subunit [Burkholderia mallei ATCC 10399] gi|254198551|ref|ZP_04904972.1| putative NADH-quinone oxidoreductase, B subunit [Burkholderia pseudomallei S13] gi|254203254|ref|ZP_04909616.1| NADH-quinone oxidoreductase, B subunit [Burkholderia mallei FMH] gi|254208590|ref|ZP_04914939.1| NADH-quinone oxidoreductase, B subunit [Burkholderia mallei JHU] gi|81607694|sp|Q63QG0|NUOB2_BURPS RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName: Full=NADH dehydrogenase I subunit B 2; AltName: Full=NDH-1 subunit B 2 gi|81684518|sp|Q62DE1|NUOB2_BURMA RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName: Full=NADH dehydrogenase I subunit B 2; AltName: Full=NDH-1 subunit B 2 gi|218528073|sp|A1UWB1|NUOB2_BURMS RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName: Full=NADH dehydrogenase I subunit B 2; AltName: Full=NDH-1 subunit B 2 gi|218528074|sp|A3NZQ8|NUOB2_BURP0 RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName: Full=NADH dehydrogenase I subunit B 2; AltName: Full=NDH-1 subunit B 2 gi|218528076|sp|A3NE04|NUOB2_BURP6 RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName: Full=NADH dehydrogenase I subunit B 2; AltName: Full=NDH-1 subunit B 2 gi|218528078|sp|A3MFR5|NUOB2_BURM7 RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName: Full=NADH dehydrogenase I subunit B 2; AltName: Full=NDH-1 subunit B 2 gi|218528079|sp|A2RYJ4|NUOB2_BURM9 RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName: Full=NADH dehydrogenase I subunit B 2; AltName: Full=NDH-1 subunit B 2 gi|52211086|emb|CAH37074.1| putative NADH dehydrogenase [Burkholderia pseudomallei K96243] gi|52423340|gb|AAU46910.1| NADH-quinone oxidoreductase, B subunit [Burkholderia mallei ATCC 23344] gi|134245369|gb|EBA45462.1| putative NADH-quinone oxidoreductase, B subunit [Burkholderia pseudomallei 305] gi|147746299|gb|EDK53377.1| NADH-quinone oxidoreductase, B subunit [Burkholderia mallei FMH] gi|147751277|gb|EDK58345.1| NADH-quinone oxidoreductase, B subunit [Burkholderia mallei JHU] gi|160696864|gb|EDP86834.1| NADH-quinone oxidoreductase, B subunit [Burkholderia mallei ATCC 10399] gi|169655291|gb|EDS87984.1| putative NADH-quinone oxidoreductase, B subunit [Burkholderia pseudomallei S13] gi|238520928|gb|EEP84384.1| NADH-quinone oxidoreductase chain b (nadh dehydrogenasei, chain b) (ndh-1, chain b) [Burkholderia mallei GB8 horse 4] gi|242140538|gb|EES26940.1| putative NADH-quinone oxidoreductase, B subunit [Burkholderia pseudomallei 1106b] gi|243060451|gb|EES42637.1| NADH-quinone oxidoreductase, B subunit [Burkholderia mallei PRL-20] Length = 167 Score = 236 bits (602), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 107/145 (73%), Positives = 126/145 (86%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 + GF+VT++D + A+ SL +MTFGLACCAVEMM A+ RYD++RFG PRASPRQ Sbjct: 8 LEKDGFIVTTLDAAMAAAQKNSLWYMTFGLACCAVEMMHAAGARYDMDRFGMIPRASPRQ 67 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 D+MIVAGTLTNKMA A+RRVYDQM EPRYV+SMGSCANGGGYYHYSYSVVRGCDRIVPV Sbjct: 68 CDLMIVAGTLTNKMAPAMRRVYDQMAEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPV 127 Query: 153 DIYVPGCPPTAEALIYGILLLQKKI 177 D+YVPGCPPTAEAL+YG++ LQ+K+ Sbjct: 128 DVYVPGCPPTAEALVYGLMQLQRKV 152 >gi|289614329|emb|CBI58839.1| unnamed protein product [Sordaria macrospora] Length = 230 Score = 236 bits (602), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 112/153 (73%), Positives = 129/153 (84%), Gaps = 3/153 (1%) Query: 29 ISSEITHKG---FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA 85 ++S+ KG + +T++D +V WAR SL MTFGLACCAVEMM S PRYD +R G Sbjct: 67 LASQEGTKGAVQYALTTLDSIVNWARQSSLWPMTFGLACCAVEMMHLSTPRYDQDRLGII 126 Query: 86 PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRG 145 RASPRQSDVMIVAGTLTNKMA ALR+VYDQMP+PR+VISMGSCANGGGYYHYSYSVVRG Sbjct: 127 FRASPRQSDVMIVAGTLTNKMAPALRQVYDQMPDPRWVISMGSCANGGGYYHYSYSVVRG 186 Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 CDRIVPVD+YVPGCPPT+EAL+YGI LQ+K+R Sbjct: 187 CDRIVPVDVYVPGCPPTSEALMYGIFQLQRKMR 219 >gi|62263125|gb|AAX78129.1| unknown protein [synthetic construct] Length = 193 Score = 236 bits (601), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 111/145 (76%), Positives = 123/145 (84%) Query: 35 HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSD 94 +KGF+ S D L+ W RTGSL +T GLACCAVEMM A RYDL+RFG R SPRQSD Sbjct: 33 NKGFITASADALINWVRTGSLWPVTTGLACCAVEMMHAGAARYDLDRFGIVFRPSPRQSD 92 Query: 95 VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154 V+IVAGTL NKMA ALR+VYDQMP+P++VISMGSCANGGGYYHYSYSVVRGCDRIVPVDI Sbjct: 93 VLIVAGTLCNKMAPALRQVYDQMPDPKWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 152 Query: 155 YVPGCPPTAEALIYGILLLQKKIRR 179 YVPGCPPTAEAL+YGI+ LQ KI R Sbjct: 153 YVPGCPPTAEALVYGIIQLQNKIIR 177 >gi|56707212|ref|YP_169108.1| NADH dehydrogenase subunit B [Francisella tularensis subsp. tularensis SCHU S4] gi|89257089|ref|YP_514451.1| NADH dehydrogenase subunit B [Francisella tularensis subsp. holarctica LVS] gi|110669682|ref|YP_666239.1| NADH dehydrogenase subunit B [Francisella tularensis subsp. tularensis FSC198] gi|115315446|ref|YP_764169.1| NADH dehydrogenase subunit B [Francisella tularensis subsp. holarctica OSU18] gi|118498240|ref|YP_899290.1| NADH dehydrogenase subunit B [Francisella tularensis subsp. novicida U112] gi|134301247|ref|YP_001121215.1| NADH dehydrogenase subunit B [Francisella tularensis subsp. tularensis WY96-3418] gi|156503303|ref|YP_001429368.1| NADH dehydrogenase subunit B [Francisella tularensis subsp. holarctica FTNF002-00] gi|167009481|ref|ZP_02274412.1| NADH-quinone oxidoreductase, b subunit family protein [Francisella tularensis subsp. holarctica FSC200] gi|187930989|ref|YP_001890973.1| NADH dehydrogenase subunit B [Francisella tularensis subsp. mediasiatica FSC147] gi|194324424|ref|ZP_03058197.1| NADH-quinone oxidoreductase, b subunit family [Francisella tularensis subsp. novicida FTE] gi|208780267|ref|ZP_03247609.1| NADH-quinone oxidoreductase, b subunit family [Francisella novicida FTG] gi|224456273|ref|ZP_03664746.1| NADH dehydrogenase subunit B [Francisella tularensis subsp. tularensis MA00-2987] gi|241667716|ref|ZP_04755294.1| NADH dehydrogenase subunit B [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254368325|ref|ZP_04984343.1| NADH dehydrogenase I, B subunit [Francisella tularensis subsp. holarctica 257] gi|254368966|ref|ZP_04984979.1| NADH-quinone oxidoreductase chain B 1 [Francisella tularensis subsp. holarctica FSC022] gi|254371428|ref|ZP_04987429.1| hypothetical protein [Francisella tularensis subsp. tularensis FSC033] gi|254373581|ref|ZP_04989067.1| NADH dehydrogenase I [Francisella tularensis subsp. novicida GA99-3549] gi|254375048|ref|ZP_04990528.1| hypothetical protein FTDG_01236 [Francisella novicida GA99-3548] gi|254874050|ref|ZP_05246760.1| NADH-quinone oxidoreductase chain B 1 [Francisella tularensis subsp. tularensis MA00-2987] gi|254876260|ref|ZP_05248970.1| NADH-quinone oxidoreductase subunit B [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|290952990|ref|ZP_06557611.1| NADH dehydrogenase subunit B [Francisella tularensis subsp. holarctica URFT1] gi|295313810|ref|ZP_06804383.1| NADH dehydrogenase subunit B [Francisella tularensis subsp. holarctica URFT1] gi|81598108|sp|Q5NIN4|NUOB_FRATT RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|122324569|sp|Q0BK52|NUOB_FRATO RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|122500210|sp|Q2A1F1|NUOB_FRATH RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|123169705|sp|Q14K37|NUOB_FRAT1 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|238065148|sp|A7NEK9|NUOB_FRATF RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|238065149|sp|A0Q8H1|NUOB_FRATN RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|238065150|sp|A4IVZ3|NUOB_FRATW RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|254767793|sp|B2SEV0|NUOB_FRATM RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|54114093|gb|AAV29680.1| NT02FT1737 [synthetic construct] gi|56603704|emb|CAG44665.1| NADH dehydrogenase I, B subunit [Francisella tularensis subsp. tularensis SCHU S4] gi|89144920|emb|CAJ80268.1| NADH dehydrogenase I, B subunit [Francisella tularensis subsp. holarctica LVS] gi|110320015|emb|CAL08048.1| NADH dehydrogenase I, B subunit [Francisella tularensis subsp. tularensis FSC198] gi|115130345|gb|ABI83532.1| NADH dehydrogenase (ubiquinone) [Francisella tularensis subsp. holarctica OSU18] gi|118424146|gb|ABK90536.1| NADH dehydrogenase I, B subunit [Francisella novicida U112] gi|134049024|gb|ABO46095.1| NADH dehydrogenase I subunit B [Francisella tularensis subsp. tularensis WY96-3418] gi|134254133|gb|EBA53227.1| NADH dehydrogenase I, B subunit [Francisella tularensis subsp. holarctica 257] gi|151569667|gb|EDN35321.1| hypothetical protein FTBG_01489 [Francisella tularensis subsp. tularensis FSC033] gi|151571305|gb|EDN36959.1| NADH dehydrogenase I [Francisella novicida GA99-3549] gi|151572766|gb|EDN38420.1| hypothetical protein FTDG_01236 [Francisella novicida GA99-3548] gi|156253906|gb|ABU62412.1| NADH-quinone oxidoreductase, subunit B [Francisella tularensis subsp. holarctica FTNF002-00] gi|157121887|gb|EDO66057.1| NADH-quinone oxidoreductase chain B 1 [Francisella tularensis subsp. holarctica FSC022] gi|187711898|gb|ACD30195.1| NADH dehydrogenase I, B subunit [Francisella tularensis subsp. mediasiatica FSC147] gi|194321489|gb|EDX18974.1| NADH-quinone oxidoreductase, b subunit family [Francisella tularensis subsp. novicida FTE] gi|208743916|gb|EDZ90218.1| NADH-quinone oxidoreductase, b subunit family [Francisella novicida FTG] gi|254840049|gb|EET18485.1| NADH-quinone oxidoreductase chain B 1 [Francisella tularensis subsp. tularensis MA00-2987] gi|254842281|gb|EET20695.1| NADH-quinone oxidoreductase subunit B [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|282158320|gb|ADA77711.1| NADH dehydrogenase subunit B [Francisella tularensis subsp. tularensis NE061598] gi|332184795|gb|AEE27049.1| NADH-ubiquinone oxidoreductase chain B [Francisella cf. novicida 3523] gi|332678976|gb|AEE88105.1| NADH-ubiquinone oxidoreductase chain B [Francisella cf. novicida Fx1] Length = 158 Score = 236 bits (601), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 111/145 (76%), Positives = 123/145 (84%) Query: 35 HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSD 94 +KGF+ S D L+ W RTGSL +T GLACCAVEMM A RYDL+RFG R SPRQSD Sbjct: 7 NKGFITASADALINWVRTGSLWPVTTGLACCAVEMMHAGAARYDLDRFGIVFRPSPRQSD 66 Query: 95 VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154 V+IVAGTL NKMA ALR+VYDQMP+P++VISMGSCANGGGYYHYSYSVVRGCDRIVPVDI Sbjct: 67 VLIVAGTLCNKMAPALRQVYDQMPDPKWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 126 Query: 155 YVPGCPPTAEALIYGILLLQKKIRR 179 YVPGCPPTAEAL+YGI+ LQ KI R Sbjct: 127 YVPGCPPTAEALVYGIIQLQNKIIR 151 >gi|221068611|ref|ZP_03544716.1| NADH-quinone oxidoreductase, B subunit [Comamonas testosteroni KF-1] gi|264677199|ref|YP_003277105.1| NADH-quinone oxidoreductase, B subunit [Comamonas testosteroni CNB-2] gi|299530743|ref|ZP_07044158.1| NADH dehydrogenase subunit B [Comamonas testosteroni S44] gi|220713634|gb|EED69002.1| NADH-quinone oxidoreductase, B subunit [Comamonas testosteroni KF-1] gi|262207711|gb|ACY31809.1| NADH-quinone oxidoreductase, B subunit [Comamonas testosteroni CNB-2] gi|298721259|gb|EFI62201.1| NADH dehydrogenase subunit B [Comamonas testosteroni S44] Length = 159 Score = 236 bits (601), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 112/152 (73%), Positives = 128/152 (84%), Gaps = 1/152 (0%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPR 91 + +GF+ TS D +V WA+TGS+ MTFGLACCAVEMM A+ RYD+ RFG RASPR Sbjct: 5 VMKEGFVTTSYDTVVNWAKTGSIWPMTFGLACCAVEMMHAAAARYDIGRFGSEVFRASPR 64 Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151 SD+MIVAGTL NKMA A+R+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVP Sbjct: 65 HSDLMIVAGTLCNKMAPAMRKVYDQMSEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVP 124 Query: 152 VDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 VD+YVPGCPPTAEALIYGI+ LQ+KIRR + Sbjct: 125 VDVYVPGCPPTAEALIYGIIQLQQKIRRTHTI 156 >gi|195341209|ref|XP_002037203.1| GM12792 [Drosophila sechellia] gi|194131319|gb|EDW53362.1| GM12792 [Drosophila sechellia] Length = 204 Score = 236 bits (601), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 109/155 (70%), Positives = 129/155 (83%) Query: 30 SSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS 89 ++ T + +D L+ W R GSL +TFGLACCAVEMM + PRYD++R+G RAS Sbjct: 45 QNQKTWGEWTCARLDDLLNWGRKGSLWPLTFGLACCAVEMMHIAAPRYDMDRYGVVFRAS 104 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQ+DV+IVAGTLTNKMA A R+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRI Sbjct: 105 PRQADVLIVAGTLTNKMAPAFRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRI 164 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 VPVDIYVPGCPPTAEAL+YGIL LQKK++R+ ++ Sbjct: 165 VPVDIYVPGCPPTAEALMYGILQLQKKVKRMRTLQ 199 >gi|302753456|ref|XP_002960152.1| hypothetical protein SELMODRAFT_270168 [Selaginella moellendorffii] gi|302804466|ref|XP_002983985.1| hypothetical protein SELMODRAFT_156186 [Selaginella moellendorffii] gi|300148337|gb|EFJ14997.1| hypothetical protein SELMODRAFT_156186 [Selaginella moellendorffii] gi|300171091|gb|EFJ37691.1| hypothetical protein SELMODRAFT_270168 [Selaginella moellendorffii] Length = 200 Score = 236 bits (601), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 108/143 (75%), Positives = 123/143 (86%) Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVM 96 F+++ +D ++ + R GS+ MTFGLACCAVEMM RYDL+RFG R SPRQSD M Sbjct: 48 NFVISKLDSVINYVRAGSIWPMTFGLACCAVEMMHTGAARYDLDRFGMIFRPSPRQSDCM 107 Query: 97 IVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV 156 IVAGTLTNKMA ALRRVYDQMPEPR+V+SMGSCANGGGYYHYSY+VVRGCDRIVPVDIYV Sbjct: 108 IVAGTLTNKMAPALRRVYDQMPEPRWVVSMGSCANGGGYYHYSYAVVRGCDRIVPVDIYV 167 Query: 157 PGCPPTAEALIYGILLLQKKIRR 179 PGCPPTAEAL+YG+L LQKKI+R Sbjct: 168 PGCPPTAEALLYGLLQLQKKIKR 190 >gi|291042878|ref|ZP_06568619.1| NADH-quinone oxidoreductase subunit B [Neisseria gonorrhoeae DGI2] gi|291013312|gb|EFE05278.1| NADH-quinone oxidoreductase subunit B [Neisseria gonorrhoeae DGI2] Length = 197 Score = 236 bits (601), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 109/151 (72%), Positives = 128/151 (84%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 + KGF+ TS D ++ + RTGSL +TFGLACCAVEMM A M RYDL+RFG R SPRQ Sbjct: 43 VLKKGFITTSADTVLNYMRTGSLWPVTFGLACCAVEMMHAGMARYDLDRFGIIFRPSPRQ 102 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 +D+MIVAGTLTNKMA ALRRVYDQ+ EPR+V+SMGSCANGGGYYHYSYSVVRG DR+VPV Sbjct: 103 ADLMIVAGTLTNKMAPALRRVYDQLAEPRWVLSMGSCANGGGYYHYSYSVVRGADRVVPV 162 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 D+YVPGCPPTAEALIYG++ LQ+KI+R + Sbjct: 163 DVYVPGCPPTAEALIYGLIQLQQKIKRTSTI 193 >gi|298370383|ref|ZP_06981699.1| NADH dehydrogenase (ubiquinone), B subunit [Neisseria sp. oral taxon 014 str. F0314] gi|298281843|gb|EFI23332.1| NADH dehydrogenase (ubiquinone), B subunit [Neisseria sp. oral taxon 014 str. F0314] Length = 197 Score = 236 bits (601), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 109/151 (72%), Positives = 128/151 (84%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 + KGF+ TS D ++ + RTGSL +TFGLACCAVEMM A M RYDL+RFG R SPRQ Sbjct: 43 VLKKGFITTSADTVLNYMRTGSLWPVTFGLACCAVEMMHAGMARYDLDRFGIIFRPSPRQ 102 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 +D+MIVAGTLTNKMA ALRRVYDQ+ EPR+V+SMGSCANGGGYYHYSYSVVRG DR+VPV Sbjct: 103 ADLMIVAGTLTNKMAPALRRVYDQLAEPRWVLSMGSCANGGGYYHYSYSVVRGADRVVPV 162 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 D+YVPGCPPTAEALIYG++ LQ+KI+R + Sbjct: 163 DVYVPGCPPTAEALIYGLMQLQQKIKRTSTI 193 >gi|167627154|ref|YP_001677654.1| NADH dehydrogenase subunit B [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|238065146|sp|B0TWP5|NUOB_FRAP2 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|167597155|gb|ABZ87153.1| NADH dehydrogenase (quinone) [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 158 Score = 236 bits (601), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 110/145 (75%), Positives = 123/145 (84%) Query: 35 HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSD 94 +KGF+ S D L+ W RTGSL +T GLACCAVEMM A RYDL+RFG R SPRQSD Sbjct: 7 NKGFITASADALINWVRTGSLWPVTTGLACCAVEMMHAGAARYDLDRFGIVFRPSPRQSD 66 Query: 95 VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154 V+IVAGTL NKMA ALR+VYDQMP+P++VISMGSCANGGGYYHYSYSVVRGCDRI+PVDI Sbjct: 67 VLIVAGTLCNKMAPALRQVYDQMPDPKWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDI 126 Query: 155 YVPGCPPTAEALIYGILLLQKKIRR 179 YVPGCPPTAEAL+YGI+ LQ KI R Sbjct: 127 YVPGCPPTAEALVYGIIQLQNKIIR 151 >gi|322711383|gb|EFZ02956.1| NADH-ubiquinone oxidoreductase 20 kD subunit [Metarhizium anisopliae ARSEF 23] Length = 316 Score = 235 bits (600), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 113/153 (73%), Positives = 127/153 (83%), Gaps = 3/153 (1%) Query: 29 ISSEITHKG---FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA 85 + SE KG + +T++D + WAR SL MTFGLACCAVEMM S PRYD +R G Sbjct: 153 LPSEEGTKGVVQYALTTLDVIANWARQSSLWPMTFGLACCAVEMMHLSTPRYDQDRLGII 212 Query: 86 PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRG 145 RASPRQSDVMIVAGTLTNKMA ALR+VYDQMP+PR+VISMGSCANGGGYYHYSYSVVRG Sbjct: 213 FRASPRQSDVMIVAGTLTNKMAPALRQVYDQMPDPRWVISMGSCANGGGYYHYSYSVVRG 272 Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 CDRIVPVDIYVPGCPPT+EAL+YGI LQ+K+R Sbjct: 273 CDRIVPVDIYVPGCPPTSEALMYGIFQLQRKMR 305 >gi|59802071|ref|YP_208783.1| NADH dehydrogenase subunit B [Neisseria gonorrhoeae FA 1090] gi|240017450|ref|ZP_04723990.1| NADH dehydrogenase subunit B [Neisseria gonorrhoeae FA6140] gi|240129042|ref|ZP_04741703.1| NADH dehydrogenase subunit B [Neisseria gonorrhoeae SK-93-1035] gi|268687420|ref|ZP_06154282.1| NADH dehydrogenase subunit I B [Neisseria gonorrhoeae SK-93-1035] gi|293398111|ref|ZP_06642316.1| NADH-quinone oxidoreductase subunit B [Neisseria gonorrhoeae F62] gi|75355476|sp|Q5F616|NUOB_NEIG1 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|59718966|gb|AAW90371.1| putative NADH dehydrogenase I chain B [Neisseria gonorrhoeae FA 1090] gi|268627704|gb|EEZ60104.1| NADH dehydrogenase subunit I B [Neisseria gonorrhoeae SK-93-1035] gi|291611374|gb|EFF40444.1| NADH-quinone oxidoreductase subunit B [Neisseria gonorrhoeae F62] Length = 160 Score = 235 bits (600), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 109/151 (72%), Positives = 127/151 (84%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 + KGF+ TS D ++ RTGSL +TFGLACCAVEMM A M RYDL+RFG R SPRQ Sbjct: 6 VLKKGFITTSADTVLNHMRTGSLWPVTFGLACCAVEMMHAGMARYDLDRFGIIFRPSPRQ 65 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 +D+MIVAGTLTNKMA ALRRVYDQ+ EPR+V+SMGSCANGGGYYHYSYSVVRG DR+VPV Sbjct: 66 ADLMIVAGTLTNKMAPALRRVYDQLAEPRWVLSMGSCANGGGYYHYSYSVVRGADRVVPV 125 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 D+YVPGCPPTAEALIYG++ LQ+KI+R + Sbjct: 126 DVYVPGCPPTAEALIYGLIQLQQKIKRTSTI 156 >gi|194906298|ref|XP_001981347.1| GG11669 [Drosophila erecta] gi|190655985|gb|EDV53217.1| GG11669 [Drosophila erecta] Length = 212 Score = 235 bits (600), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 109/142 (76%), Positives = 125/142 (88%) Query: 43 VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL 102 +D L+ W R GSL MTFGLACCAVEMM + PRYD++R+G RASPRQ+DV+IVAGTL Sbjct: 66 LDDLLNWGRKGSLWPMTFGLACCAVEMMHIAAPRYDMDRYGVVFRASPRQADVIIVAGTL 125 Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162 TNKMA A R+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT Sbjct: 126 TNKMAPAFRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 185 Query: 163 AEALIYGILLLQKKIRRVGNVK 184 AEAL+YGIL LQKK++R+ ++ Sbjct: 186 AEALMYGILQLQKKVKRMRTLQ 207 >gi|321259133|ref|XP_003194287.1| hypothetical protein CGB_E3580W [Cryptococcus gattii WM276] gi|317460758|gb|ADV22500.1| Conserved hypothetical protein [Cryptococcus gattii WM276] Length = 229 Score = 235 bits (600), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 109/155 (70%), Positives = 131/155 (84%), Gaps = 2/155 (1%) Query: 27 SRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF 84 +++S E G ++++++D++V W R GS+ MTFGLACCAVEMM + RYD +R G Sbjct: 65 NQLSLETPRNGAEYVLSTLDKIVNWGRQGSMWPMTFGLACCAVEMMHMAAARYDQDRLGV 124 Query: 85 APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR 144 RASPRQSD+MIVAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSY+VVR Sbjct: 125 VFRASPRQSDIMIVAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYAVVR 184 Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179 GCDRIVPVDIYVPGCPPTAEAL+YG+L L +K+RR Sbjct: 185 GCDRIVPVDIYVPGCPPTAEALLYGMLQLMRKMRR 219 >gi|88607775|ref|YP_505115.1| NADH dehydrogenase subunit B [Anaplasma phagocytophilum HZ] gi|123495312|sp|Q2GKI6|NUOB_ANAPZ RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|88598838|gb|ABD44308.1| NADH dehydrogenase I, B subunit [Anaplasma phagocytophilum HZ] Length = 174 Score = 235 bits (600), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 112/151 (74%), Positives = 130/151 (86%), Gaps = 4/151 (2%) Query: 36 KGFLVTS----VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPR 91 +GF+VT +++++ WAR+GSL MTFGLACCAVEMM + RYDL+R+G RASPR Sbjct: 19 QGFVVTQFSDLIERVLKWARSGSLWPMTFGLACCAVEMMHTAASRYDLDRYGIMFRASPR 78 Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151 Q+DVMIVAGTLTNKMA ALRRVYDQM +P+YVISMGSCANGGGYYHYSYSVVRGCDR+VP Sbjct: 79 QADVMIVAGTLTNKMAPALRRVYDQMADPKYVISMGSCANGGGYYHYSYSVVRGCDRVVP 138 Query: 152 VDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182 VDIYVPGCPPTAEAL+YG+L LQ+KI R G Sbjct: 139 VDIYVPGCPPTAEALLYGLLCLQQKILRNGQ 169 >gi|24651058|ref|NP_651698.1| CG2014 [Drosophila melanogaster] gi|7301791|gb|AAF56901.1| CG2014 [Drosophila melanogaster] Length = 212 Score = 235 bits (600), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 108/154 (70%), Positives = 129/154 (83%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP 90 ++ T + +D L+ W R GSL +TFGLACCAVEMM + PRYD++R+G RASP Sbjct: 54 NQKTWGEWTCARLDDLLNWGRKGSLWPLTFGLACCAVEMMHIAAPRYDMDRYGVVFRASP 113 Query: 91 RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150 RQ+DV+IVAGTLTNKMA A R++YDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRIV Sbjct: 114 RQADVLIVAGTLTNKMAPAFRKIYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIV 173 Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 PVDIYVPGCPPTAEAL+YGIL LQKK++R+ ++ Sbjct: 174 PVDIYVPGCPPTAEALMYGILQLQKKVKRMRTLQ 207 >gi|195574757|ref|XP_002105350.1| GD21440 [Drosophila simulans] gi|194201277|gb|EDX14853.1| GD21440 [Drosophila simulans] Length = 212 Score = 235 bits (600), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 109/154 (70%), Positives = 129/154 (83%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP 90 ++ T + +D L+ W R GSL +TFGLACCAVEMM + PRYD++R+G RASP Sbjct: 54 NQKTWGEWTCARLDDLLNWGRKGSLWPLTFGLACCAVEMMHIAAPRYDMDRYGVVFRASP 113 Query: 91 RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150 RQ+DV+IVAGTLTNKMA A R+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRIV Sbjct: 114 RQADVLIVAGTLTNKMAPAFRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIV 173 Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 PVDIYVPGCPPTAEAL+YGIL LQKK++R+ ++ Sbjct: 174 PVDIYVPGCPPTAEALMYGILQLQKKVKRMRTLQ 207 >gi|66770743|gb|AAY54683.1| IP08160p [Drosophila melanogaster] Length = 213 Score = 235 bits (600), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 108/154 (70%), Positives = 129/154 (83%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP 90 ++ T + +D L+ W R GSL +TFGLACCAVEMM + PRYD++R+G RASP Sbjct: 55 NQKTWGEWTCARLDDLLNWGRKGSLWPLTFGLACCAVEMMHIAAPRYDMDRYGVVFRASP 114 Query: 91 RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150 RQ+DV+IVAGTLTNKMA A R++YDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRIV Sbjct: 115 RQADVLIVAGTLTNKMAPAFRKIYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIV 174 Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 PVDIYVPGCPPTAEAL+YGIL LQKK++R+ ++ Sbjct: 175 PVDIYVPGCPPTAEALMYGILQLQKKVKRMRTLQ 208 >gi|134079540|emb|CAK97016.1| unnamed protein product [Aspergillus niger] Length = 219 Score = 235 bits (599), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 106/142 (74%), Positives = 123/142 (86%) Query: 39 LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIV 98 ++T+ DQ+V WAR GSL ++FGLACCA+EMM SMPRYD +R G RASPRQSDVMIV Sbjct: 69 VLTTFDQIVNWARQGSLWPLSFGLACCAIEMMHVSMPRYDQDRLGIIFRASPRQSDVMIV 128 Query: 99 AGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPG 158 AGT+TNKMA ALR+ YDQMPEPR+VISMGSCANGGGYYHYSYS+VRG DRIVPVD+Y+PG Sbjct: 129 AGTVTNKMAPALRQCYDQMPEPRWVISMGSCANGGGYYHYSYSIVRGVDRIVPVDVYIPG 188 Query: 159 CPPTAEALIYGILLLQKKIRRV 180 CPPTAEA +YG+ LQKKI+R Sbjct: 189 CPPTAEATLYGVFQLQKKIKRT 210 >gi|310800125|gb|EFQ35018.1| NADH-quinone oxidoreductase [Glomerella graminicola M1.001] Length = 201 Score = 235 bits (599), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 109/141 (77%), Positives = 122/141 (86%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 + +TS+D + WAR SL MTFGLACCAVEMM S PRYD +R G RASPRQSDVMI Sbjct: 50 YALTSLDVITNWARQSSLWPMTFGLACCAVEMMHLSTPRYDQDRLGIIFRASPRQSDVMI 109 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDR+VPVD+YVP Sbjct: 110 VAGTLTNKMAPALRQVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRVVPVDVYVP 169 Query: 158 GCPPTAEALIYGILLLQKKIR 178 GCPPT+EAL+YGI LQ+K+R Sbjct: 170 GCPPTSEALMYGIFQLQRKMR 190 >gi|195503274|ref|XP_002098583.1| GE23857 [Drosophila yakuba] gi|194184684|gb|EDW98295.1| GE23857 [Drosophila yakuba] Length = 212 Score = 234 bits (598), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 109/154 (70%), Positives = 128/154 (83%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP 90 + T + +D L+ W R GSL +TFGLACCAVEMM + PRYD++R+G RASP Sbjct: 54 DQKTWGEWTCARLDDLLNWGRKGSLWPLTFGLACCAVEMMHIAAPRYDMDRYGVVFRASP 113 Query: 91 RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150 RQ+DV+IVAGTLTNKMA A R+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRIV Sbjct: 114 RQADVLIVAGTLTNKMAPAFRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIV 173 Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 PVDIYVPGCPPTAEAL+YGIL LQKK++R+ ++ Sbjct: 174 PVDIYVPGCPPTAEALMYGILQLQKKVKRMRTLQ 207 >gi|268370120|ref|NP_001161241.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial [Nasonia vitripennis] Length = 217 Score = 234 bits (598), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 103/143 (72%), Positives = 125/143 (87%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 + + +D L+ W R GS+ +TFGLACCAVEMM + PRYD++RFG RASPR +DV+I Sbjct: 66 YAMARLDDLLNWGRKGSMWPLTFGLACCAVEMMHIAAPRYDMDRFGVVFRASPRHADVII 125 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGT+TNKMA ALR+VYDQMP+P++VISMGSCANGGGYYHYSYSVVRGCDRI+PVDIYVP Sbjct: 126 VAGTVTNKMAPALRKVYDQMPDPKWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVP 185 Query: 158 GCPPTAEALIYGILLLQKKIRRV 180 GCPPTAEAL+YG+L LQKK++R+ Sbjct: 186 GCPPTAEALLYGVLQLQKKVKRM 208 >gi|289741217|gb|ADD19356.1| NADH-ubiquinone oxidoreductase NUFS7/PSST/20 kDa subunit [Glossina morsitans morsitans] Length = 220 Score = 234 bits (598), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 105/147 (71%), Positives = 127/147 (86%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 + + +D L+ W R S+ +TFGLACCAVEMM + PRYD++R+G RASPRQ+DV+I Sbjct: 69 WTMARLDDLLNWGRKSSIWPLTFGLACCAVEMMHIAAPRYDMDRYGVVFRASPRQADVII 128 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRI+PVDIYVP Sbjct: 129 VAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVP 188 Query: 158 GCPPTAEALIYGILLLQKKIRRVGNVK 184 GCPPTAEAL+YG+L LQKK++R+ ++ Sbjct: 189 GCPPTAEALMYGVLQLQKKVKRMKTLQ 215 >gi|302679558|ref|XP_003029461.1| hypothetical protein SCHCODRAFT_69693 [Schizophyllum commune H4-8] gi|300103151|gb|EFI94558.1| hypothetical protein SCHCODRAFT_69693 [Schizophyllum commune H4-8] Length = 236 Score = 234 bits (598), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 107/170 (62%), Positives = 133/170 (78%) Query: 10 IISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEM 69 + GQS ++ ++ + + +++ + D++ WAR S+ +TFGLACCAVEM Sbjct: 57 VEKGQSFRAVVNAQSNQHSLETPQNKAEYVLATFDKIANWARQSSMWPVTFGLACCAVEM 116 Query: 70 MQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSC 129 M + RYD +R G RASPRQS++MIVAGTLTNKMA ALR+VYDQMPEPR+V+SMGSC Sbjct: 117 MHMAAARYDQDRLGIIFRASPRQSEIMIVAGTLTNKMAPALRKVYDQMPEPRWVVSMGSC 176 Query: 130 ANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179 ANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG+L LQ+K+RR Sbjct: 177 ANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGMLQLQRKMRR 226 >gi|332968234|gb|EGK07311.1| NADH-quinone oxidoreductase subunit B [Kingella kingae ATCC 23330] Length = 159 Score = 234 bits (598), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 109/147 (74%), Positives = 126/147 (85%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 + +KGF+ S D ++ + RTGSL +TFGLACCAVEMM A M RYDL+RFG R SPRQ Sbjct: 6 VLNKGFVTASADTVLNYVRTGSLWPVTFGLACCAVEMMHAGMARYDLDRFGIIFRPSPRQ 65 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 SD+MIVAGTLTNKMA ALRRVYDQM EPR+V+SMGSCANGGGYYHYSYSVVRG DR+VPV Sbjct: 66 SDLMIVAGTLTNKMAPALRRVYDQMAEPRWVLSMGSCANGGGYYHYSYSVVRGADRVVPV 125 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179 D+YVPGCPPTAEAL+YG++ LQ KI+R Sbjct: 126 DVYVPGCPPTAEALLYGLIQLQGKIKR 152 >gi|302912562|ref|XP_003050728.1| hypothetical protein NECHADRAFT_60986 [Nectria haematococca mpVI 77-13-4] gi|256731666|gb|EEU45015.1| hypothetical protein NECHADRAFT_60986 [Nectria haematococca mpVI 77-13-4] Length = 223 Score = 234 bits (598), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 107/141 (75%), Positives = 122/141 (86%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 + +T++D + WAR SL MTFGLACCAVEMM S PRYD +R G RASPRQSDVMI Sbjct: 72 YALTTLDVIANWARQSSLWPMTFGLACCAVEMMHLSTPRYDQDRLGIIFRASPRQSDVMI 131 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGTLTNKMA ALR+VYDQMP+PR+V+SMGSCANGGGYYHYSYSVVRGCDRIVPVD+YVP Sbjct: 132 VAGTLTNKMAPALRQVYDQMPDPRWVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVP 191 Query: 158 GCPPTAEALIYGILLLQKKIR 178 GCPPT+EAL+YGI LQ+K+R Sbjct: 192 GCPPTSEALMYGIFQLQRKMR 212 >gi|83951739|ref|ZP_00960471.1| NADH dehydrogenase beta subunit [Roseovarius nubinhibens ISM] gi|83836745|gb|EAP76042.1| NADH dehydrogenase beta subunit [Roseovarius nubinhibens ISM] Length = 127 Score = 234 bits (597), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 111/126 (88%), Positives = 117/126 (92%), Gaps = 1/126 (0%) Query: 58 MTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQM 117 MTF + CCAVEMM +MPRYD ERFGFAPRASPRQSDVMIVAGTLTNKMA ALR+VYDQM Sbjct: 1 MTF-VCCCAVEMMHVAMPRYDAERFGFAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQM 59 Query: 118 PEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 PEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQ+KI Sbjct: 60 PEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQRKI 119 Query: 178 RRVGNV 183 RR G + Sbjct: 120 RRTGTI 125 >gi|328705672|ref|XP_001949063.2| PREDICTED: probable NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial-like isoform 1 [Acyrthosiphon pisum] gi|328705674|ref|XP_003242871.1| PREDICTED: probable NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial-like isoform 2 [Acyrthosiphon pisum] gi|239788027|dbj|BAH70710.1| ACYPI008241 [Acyrthosiphon pisum] Length = 218 Score = 234 bits (597), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 109/169 (64%), Positives = 132/169 (78%) Query: 12 SGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQ 71 + Q + EK +S + V +D ++ W R SL +TFGLACCAVEMM Sbjct: 41 ASQDTNIEEKPYRPYSPFQKTNNMAEYAVARLDDVLNWGRKHSLWPLTFGLACCAVEMMH 100 Query: 72 ASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCAN 131 + PRYD++R+G RASPRQ+D++IVAGTLTNKMA ALRRVYDQMP+P++VISMGSCAN Sbjct: 101 IAAPRYDMDRYGVVFRASPRQADLIIVAGTLTNKMAPALRRVYDQMPDPKWVISMGSCAN 160 Query: 132 GGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 GGGYYHYSYSVVRGCDR++PVDIYVPGCPPTAEAL+YGIL LQKKI+R+ Sbjct: 161 GGGYYHYSYSVVRGCDRVIPVDIYVPGCPPTAEALMYGILQLQKKIKRM 209 >gi|71023639|ref|XP_762049.1| hypothetical protein UM05902.1 [Ustilago maydis 521] gi|46101614|gb|EAK86847.1| hypothetical protein UM05902.1 [Ustilago maydis 521] Length = 228 Score = 234 bits (597), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 110/155 (70%), Positives = 127/155 (81%), Gaps = 2/155 (1%) Query: 27 SRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF 84 +++S E G ++++S+D++ WAR S MTFGLACCAVEMM + RYD +R G Sbjct: 64 NQLSLETPKNGVEYVLSSMDKMANWARQSSFWPMTFGLACCAVEMMHVATARYDQDRLGV 123 Query: 85 APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR 144 RASPRQSD MIVAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVR Sbjct: 124 VFRASPRQSDCMIVAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVR 183 Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179 GCDRIVPVD+YVPGCPPTAEAL+YG L L +KIRR Sbjct: 184 GCDRIVPVDLYVPGCPPTAEALLYGFLQLHRKIRR 218 >gi|149242844|ref|XP_001526472.1| NADH-ubiquinone oxidoreductase 20 kDa subunit [Lodderomyces elongisporus NRRL YB-4239] gi|146450595|gb|EDK44851.1| NADH-ubiquinone oxidoreductase 20 kDa subunit [Lodderomyces elongisporus NRRL YB-4239] Length = 224 Score = 234 bits (597), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 111/179 (62%), Positives = 133/179 (74%), Gaps = 2/179 (1%) Query: 4 TTVNQKIISGQSSCSLEKVDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFG 61 T V K + +++ DF +S + + +TS+D + WAR S +TFG Sbjct: 37 TPVASKRYVSSKELTPKELPTDFPLMSQKTASSAVDYALTSLDTIANWARKSSFWPVTFG 96 Query: 62 LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPR 121 LACCAVEMM S PRYD +R G RASPRQSD+MIVAGTLTNKMA ALR+VYDQMP+P+ Sbjct: 97 LACCAVEMMHVSAPRYDQDRLGIIFRASPRQSDIMIVAGTLTNKMAPALRQVYDQMPDPK 156 Query: 122 YVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 +VISMGSCANGGGYYHYSYSVVRGCDR+VPVDIYVPGCPPTAEAL+YG+ LQKK+ + Sbjct: 157 WVISMGSCANGGGYYHYSYSVVRGCDRVVPVDIYVPGCPPTAEALMYGVFQLQKKMMKT 215 >gi|91088057|ref|XP_967271.1| PREDICTED: similar to CG9172 CG9172-PA [Tribolium castaneum] gi|270012769|gb|EFA09217.1| hypothetical protein TcasGA2_TC006185 [Tribolium castaneum] Length = 202 Score = 234 bits (597), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 107/167 (64%), Positives = 130/167 (77%) Query: 18 SLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRY 77 S E +S + + +D L+ W R S+ +TFGLACCAVEMM + PRY Sbjct: 31 STEVAPRPYSPFQKTSNLAEYSLARLDDLLNWGRKSSMWPLTFGLACCAVEMMHIAAPRY 90 Query: 78 DLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137 D++R+G RASPRQ+DV+I+AGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYH Sbjct: 91 DMDRYGVVFRASPRQADVIIIAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYH 150 Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 YSYSVVRGCDRI+PVDIYVPGCPPTAEAL+YG+L LQKK++R ++ Sbjct: 151 YSYSVVRGCDRIIPVDIYVPGCPPTAEALLYGVLQLQKKVKRYNALQ 197 >gi|119897120|ref|YP_932333.1| NADH-quinone oxidoreductase subunit B [Azoarcus sp. BH72] gi|218527969|sp|A1K3P1|NUOB2_AZOSB RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName: Full=NADH dehydrogenase I subunit B 2; AltName: Full=NDH-1 subunit B 2 gi|119669533|emb|CAL93446.1| conserved hypothetical NADH-quinone oxidoreductase chain B [Azoarcus sp. BH72] Length = 159 Score = 234 bits (596), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 104/143 (72%), Positives = 126/143 (88%) Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVM 96 GFL+T +D L R+ S+ ++TFGLACCAVEMMQA+ RYD++RFG PRASPRQ+D++ Sbjct: 10 GFLLTRLDTLCDMVRSNSMWYLTFGLACCAVEMMQAAASRYDMDRFGMIPRASPRQADLI 69 Query: 97 IVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV 156 IVAGTLTNKMA A+R++YDQM EPRYVISMGSCANGGGYYHYSYSV RGCDRI+PVDIY+ Sbjct: 70 IVAGTLTNKMAPAIRKIYDQMAEPRYVISMGSCANGGGYYHYSYSVARGCDRILPVDIYI 129 Query: 157 PGCPPTAEALIYGILLLQKKIRR 179 PGCPPTAEAL+YG++ LQ K++R Sbjct: 130 PGCPPTAEALLYGLIQLQNKLKR 152 >gi|171677913|ref|XP_001903907.1| hypothetical protein [Podospora anserina S mat+] gi|170937025|emb|CAP61683.1| unnamed protein product [Podospora anserina S mat+] Length = 224 Score = 234 bits (596), Expect = 6e-60, Method: Compositional matrix adjust. Identities = 111/153 (72%), Positives = 127/153 (83%), Gaps = 3/153 (1%) Query: 29 ISSEITHKGFL---VTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA 85 + S+ KGF+ +T++D + W R SL MTFGLACCAVEMM S PRYD +R G Sbjct: 61 LPSQEGTKGFVQYALTTLDIITNWGRQSSLWPMTFGLACCAVEMMHLSTPRYDQDRLGII 120 Query: 86 PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRG 145 RASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRG Sbjct: 121 FRASPRQSDVMIVAGTLTNKMAPALRQVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRG 180 Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 CDR+VPVD+YVPGCPPT+EAL+YGI LQ+K+R Sbjct: 181 CDRVVPVDVYVPGCPPTSEALMYGIFQLQRKMR 213 >gi|238023160|ref|ZP_04603586.1| hypothetical protein GCWU000324_03086 [Kingella oralis ATCC 51147] gi|237865543|gb|EEP66683.1| hypothetical protein GCWU000324_03086 [Kingella oralis ATCC 51147] Length = 159 Score = 234 bits (596), Expect = 6e-60, Method: Compositional matrix adjust. Identities = 108/147 (73%), Positives = 126/147 (85%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 + +KGF+ S D ++ + RTGSL +TFGLACCAVEMM A M RYDL+RFG R SPRQ Sbjct: 6 VLNKGFVTASADTVLNYVRTGSLWPVTFGLACCAVEMMHAGMARYDLDRFGIIFRPSPRQ 65 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 +D+MIVAGTLTNKMA ALRRVYDQM EPR+V+SMGSCANGGGYYHYSYSVVRG DR+VPV Sbjct: 66 ADLMIVAGTLTNKMAPALRRVYDQMAEPRWVLSMGSCANGGGYYHYSYSVVRGADRVVPV 125 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179 D+YVPGCPPTAEAL+YG++ LQ KI+R Sbjct: 126 DVYVPGCPPTAEALLYGLIQLQGKIKR 152 >gi|237748890|ref|ZP_04579370.1| NADH-quinone oxidoreductase subunit B [Oxalobacter formigenes OXCC13] gi|229380252|gb|EEO30343.1| NADH-quinone oxidoreductase subunit B [Oxalobacter formigenes OXCC13] Length = 159 Score = 234 bits (596), Expect = 6e-60, Method: Compositional matrix adjust. Identities = 106/151 (70%), Positives = 128/151 (84%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 + KGF+ T++D + W RTGS+ +TFGLACCA+EMM +SMPRYD++RFG RASPRQ Sbjct: 6 LMDKGFVTTTLDTAINWLRTGSVWPVTFGLACCAIEMMHSSMPRYDMDRFGTFFRASPRQ 65 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 SD+MIVAGTL NKMA ALR+VYDQM EPR+V+SMGSCANGGGYYH SYSVVRGCD+IVPV Sbjct: 66 SDLMIVAGTLCNKMAPALRKVYDQMAEPRWVVSMGSCANGGGYYHDSYSVVRGCDKIVPV 125 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 DIYVPGCPPTAEAL+Y ++ L+ KI+R + Sbjct: 126 DIYVPGCPPTAEALLYALIQLRTKIKRTSTI 156 >gi|301107944|ref|XP_002903054.1| NADH ubiquinone oxidoreductase, putative [Phytophthora infestans T30-4] gi|262098172|gb|EEY56224.1| NADH ubiquinone oxidoreductase, putative [Phytophthora infestans T30-4] Length = 205 Score = 233 bits (595), Expect = 6e-60, Method: Compositional matrix adjust. Identities = 105/141 (74%), Positives = 122/141 (86%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 ++V+ VD LV W R SL +TFGLACCAVEMM ++ RYD ER G RASPRQ+DVMI Sbjct: 54 YVVSRVDDLVNWGRKSSLWPITFGLACCAVEMMHSAGSRYDFERMGMVFRASPRQTDVMI 113 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGTLTNKMA ALRRVYDQMPEPRYV+SMGSCANGGGYYHYSY+VVRG DR++PVDIYVP Sbjct: 114 VAGTLTNKMAPALRRVYDQMPEPRYVVSMGSCANGGGYYHYSYAVVRGADRVIPVDIYVP 173 Query: 158 GCPPTAEALIYGILLLQKKIR 178 GCPPTAEAL++G++ LQKK++ Sbjct: 174 GCPPTAEALLFGLMQLQKKVK 194 >gi|301107922|ref|XP_002903043.1| NADH ubiquinone oxidoreductase, putative [Phytophthora infestans T30-4] gi|262098161|gb|EEY56213.1| NADH ubiquinone oxidoreductase, putative [Phytophthora infestans T30-4] Length = 205 Score = 233 bits (595), Expect = 7e-60, Method: Compositional matrix adjust. Identities = 105/141 (74%), Positives = 122/141 (86%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 ++V+ VD LV W R SL +TFGLACCAVEMM ++ RYD ER G RASPRQ+DVMI Sbjct: 54 YVVSRVDDLVNWGRKSSLWPITFGLACCAVEMMHSAGSRYDFERMGMVFRASPRQTDVMI 113 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGTLTNKMA ALRRVYDQMPEPRYV+SMGSCANGGGYYHYSY+VVRG DR++PVDIYVP Sbjct: 114 VAGTLTNKMAPALRRVYDQMPEPRYVVSMGSCANGGGYYHYSYAVVRGADRVIPVDIYVP 173 Query: 158 GCPPTAEALIYGILLLQKKIR 178 GCPPTAEAL++G++ LQKK++ Sbjct: 174 GCPPTAEALLFGLMQLQKKVK 194 >gi|325267311|ref|ZP_08133973.1| NADH-quinone oxidoreductase subunit B [Kingella denitrificans ATCC 33394] gi|324981248|gb|EGC16898.1| NADH-quinone oxidoreductase subunit B [Kingella denitrificans ATCC 33394] Length = 159 Score = 233 bits (595), Expect = 8e-60, Method: Compositional matrix adjust. Identities = 108/147 (73%), Positives = 126/147 (85%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 + +KGF+ S D ++ + RTGSL +TFGLACCAVEMM A M RYDL+RFG R SPRQ Sbjct: 6 VLNKGFVTASADTVLNYVRTGSLWPVTFGLACCAVEMMHAGMARYDLDRFGIIFRPSPRQ 65 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 +D+MIVAGTLTNKMA ALRRVYDQM EPR+V+SMGSCANGGGYYHYSYSVVRG DR+VPV Sbjct: 66 ADLMIVAGTLTNKMAPALRRVYDQMAEPRWVLSMGSCANGGGYYHYSYSVVRGADRVVPV 125 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179 D+YVPGCPPTAEAL+YG++ LQ KI+R Sbjct: 126 DVYVPGCPPTAEALLYGLIQLQGKIKR 152 >gi|294788083|ref|ZP_06753327.1| NADH dehydrogenase (ubiquinone), B subunit [Simonsiella muelleri ATCC 29453] gi|294484376|gb|EFG32059.1| NADH dehydrogenase (ubiquinone), B subunit [Simonsiella muelleri ATCC 29453] Length = 159 Score = 233 bits (594), Expect = 8e-60, Method: Compositional matrix adjust. Identities = 108/147 (73%), Positives = 126/147 (85%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 + +KGF+ S D ++ + RTGSL +TFGLACCAVEMM A M RYDL+RFG R SPRQ Sbjct: 6 VLNKGFVTASADTVLNYVRTGSLWPVTFGLACCAVEMMHAGMARYDLDRFGIIFRPSPRQ 65 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 SD+MIVAGTLTNKMA ALRRVYDQM EPR+V+SMG+CANGGGYYHYSYSVVRG DR+VPV Sbjct: 66 SDLMIVAGTLTNKMAPALRRVYDQMAEPRWVLSMGTCANGGGYYHYSYSVVRGADRVVPV 125 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179 D+YVPGCPPTAEAL+YG++ LQ KI+R Sbjct: 126 DVYVPGCPPTAEALLYGLIQLQGKIKR 152 >gi|255732844|ref|XP_002551345.1| NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial precursor [Candida tropicalis MYA-3404] gi|240131086|gb|EER30647.1| NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial precursor [Candida tropicalis MYA-3404] Length = 212 Score = 233 bits (594), Expect = 9e-60, Method: Compositional matrix adjust. Identities = 108/162 (66%), Positives = 129/162 (79%), Gaps = 2/162 (1%) Query: 20 EKVDADFSRISSE--ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRY 77 + + DF +S + +++TS+D + WAR S +TFGLACCAVEMM S PRY Sbjct: 41 QTLPTDFPLMSEKKATNAADYVLTSLDAIANWARKSSFWPVTFGLACCAVEMMHVSAPRY 100 Query: 78 DLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137 D +R G RASPRQSD+MIVAGTLTNKMA ALR+VYDQMP+P++VISMGSCANGGGYYH Sbjct: 101 DQDRLGIIFRASPRQSDIMIVAGTLTNKMAPALRQVYDQMPDPKWVISMGSCANGGGYYH 160 Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179 YSYSVVRGCDR+VPVDIYVPGCPPTAEAL+YG+ LQKK+ + Sbjct: 161 YSYSVVRGCDRVVPVDIYVPGCPPTAEALMYGVFQLQKKMMK 202 >gi|317033085|ref|XP_001394844.2| NADH dehydrogenase [ubiquinone] iron-sulfur protein 7 [Aspergillus niger CBS 513.88] Length = 155 Score = 233 bits (594), Expect = 9e-60, Method: Compositional matrix adjust. Identities = 106/141 (75%), Positives = 123/141 (87%) Query: 39 LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIV 98 ++T+ DQ+V WAR GSL ++FGLACCA+EMM SMPRYD +R G RASPRQSDVMIV Sbjct: 5 VLTTFDQIVNWARQGSLWPLSFGLACCAIEMMHVSMPRYDQDRLGIIFRASPRQSDVMIV 64 Query: 99 AGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPG 158 AGT+TNKMA ALR+ YDQMPEPR+VISMGSCANGGGYYHYSYS+VRG DRIVPVD+Y+PG Sbjct: 65 AGTVTNKMAPALRQCYDQMPEPRWVISMGSCANGGGYYHYSYSIVRGVDRIVPVDVYIPG 124 Query: 159 CPPTAEALIYGILLLQKKIRR 179 CPPTAEA +YG+ LQKKI+R Sbjct: 125 CPPTAEATLYGVFQLQKKIKR 145 >gi|89900287|ref|YP_522758.1| NADH dehydrogenase subunit B [Rhodoferax ferrireducens T118] gi|122479525|sp|Q21YC6|NUOB_RHOFD RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|89345024|gb|ABD69227.1| NADH-quinone oxidoreductase, B subunit [Rhodoferax ferrireducens T118] Length = 159 Score = 233 bits (594), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 111/152 (73%), Positives = 126/152 (82%), Gaps = 1/152 (0%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPR 91 I +GF+ TS D ++ WA+TGSL M+FGLACCAVEMM A+ RYD+ RFG RASPR Sbjct: 5 ILKEGFITTSYDSVMNWAKTGSLWPMSFGLACCAVEMMHAANARYDISRFGAEVFRASPR 64 Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151 QSD++IVAGTL NKMA A R+VYDQM EPR VISMGSCANGGGYYHYSYSVVRGCDRIVP Sbjct: 65 QSDLIIVAGTLCNKMAPAFRKVYDQMSEPRRVISMGSCANGGGYYHYSYSVVRGCDRIVP 124 Query: 152 VDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 VD+YVPGCPPTAEAL+YGI+ LQ KIRR + Sbjct: 125 VDVYVPGCPPTAEALLYGIIQLQHKIRRTQTI 156 >gi|225712904|gb|ACO12298.1| NADH dehydrogenase iron-sulfur protein 7, mitochondrial precursor [Lepeophtheirus salmonis] Length = 211 Score = 233 bits (594), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 108/147 (73%), Positives = 126/147 (85%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 ++V +D L+ W R SL +TFGLA CAVEMM + PRYD++R+G RASPRQ+DV++ Sbjct: 60 YVVARLDDLINWGRKTSLWPLTFGLAYCAVEMMHIAAPRYDMDRYGVVFRASPRQADVIL 119 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGTLTNKMA A R+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP Sbjct: 120 VAGTLTNKMAPAFRKVYDQMLEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 179 Query: 158 GCPPTAEALIYGILLLQKKIRRVGNVK 184 GCPPTAEAL+YGIL LQKKI+R+ NV+ Sbjct: 180 GCPPTAEALMYGILQLQKKIKRMKNVQ 206 >gi|241953755|ref|XP_002419599.1| NADH-ubiquinone oxidoreductase subunit, putative [Candida dubliniensis CD36] gi|223642939|emb|CAX43194.1| NADH-ubiquinone oxidoreductase subunit, putative [Candida dubliniensis CD36] Length = 218 Score = 233 bits (593), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 107/157 (68%), Positives = 127/157 (80%), Gaps = 2/157 (1%) Query: 25 DFSRISSE--ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82 DF +S + +++TS+D + WAR S +TFGLACCAVEMM S PRYD +R Sbjct: 52 DFPLMSEKKATNAADYVLTSLDMIANWARKSSFWPVTFGLACCAVEMMHVSAPRYDQDRL 111 Query: 83 GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142 G RASPRQSD+MIVAGTLTNKMA ALR+VYDQMP+P++VISMGSCANGGGYYHYSYSV Sbjct: 112 GIIFRASPRQSDIMIVAGTLTNKMAPALRQVYDQMPDPKWVISMGSCANGGGYYHYSYSV 171 Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179 VRGCDR++PVDIYVPGCPPTAEAL+YG+ LQKK+ + Sbjct: 172 VRGCDRVIPVDIYVPGCPPTAEALMYGVFQLQKKMMK 208 >gi|126275592|ref|XP_001386878.1| NADH-ubiquinone oxidoreductase [Scheffersomyces stipitis CBS 6054] gi|126212747|gb|EAZ62855.1| NADH-ubiquinone oxidoreductase [Pichia stipitis CBS 6054] Length = 207 Score = 232 bits (592), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 109/162 (67%), Positives = 128/162 (79%), Gaps = 2/162 (1%) Query: 20 EKVDADFSRISSEITHK--GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRY 77 + + DF +S + + +TS+D + WAR S +TFGLACCAVEMM S PRY Sbjct: 36 KALPTDFPLMSEKTASSPIDYALTSLDSIANWARKSSFWPVTFGLACCAVEMMHVSTPRY 95 Query: 78 DLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137 D +R G RASPRQSD+MIVAGT+TNKMA ALR+VYDQMP+PR+VISMGSCANGGGYYH Sbjct: 96 DQDRLGIIFRASPRQSDIMIVAGTVTNKMAPALRQVYDQMPDPRWVISMGSCANGGGYYH 155 Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179 YSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG+ LQKK+ + Sbjct: 156 YSYSVVRGCDRIVPVDIYVPGCPPTAEALMYGVFQLQKKMMK 197 >gi|6689660|emb|CAB65525.1| subunit NUKM of protein NADH:Ubiquinone Oxidoreductase (Complex I) [Yarrowia lipolytica] Length = 210 Score = 232 bits (592), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 109/169 (64%), Positives = 130/169 (76%), Gaps = 2/169 (1%) Query: 12 SGQSSCSLEKVDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVEM 69 +G S + DF S + + + +T++D + WAR GS +TFGLACCAVEM Sbjct: 31 AGTPRVSSSSMPTDFPLPSQQKPNSAVDYTLTTLDAVANWARQGSFWPVTFGLACCAVEM 90 Query: 70 MQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSC 129 M S PRYD +R G RASPRQSD+MIVAGTLTNKMA LR+VYDQMPEPR+VISMGSC Sbjct: 91 MHVSAPRYDQDRLGIIFRASPRQSDIMIVAGTLTNKMAPVLRQVYDQMPEPRWVISMGSC 150 Query: 130 ANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 ANGGGYYH+SYSVVRGCDRIVPVD+YVPGCPPT+EAL+YG+ LQ+K+R Sbjct: 151 ANGGGYYHFSYSVVRGCDRIVPVDVYVPGCPPTSEALMYGVFQLQRKMR 199 >gi|68472189|ref|XP_719890.1| potential mitochondrial Complex I, NUKM_20kd subunit [Candida albicans SC5314] gi|68472424|ref|XP_719773.1| potential mitochondrial Complex I, NUKM_20kd subunit [Candida albicans SC5314] gi|46441605|gb|EAL00901.1| potential mitochondrial Complex I, NUKM_20kd subunit [Candida albicans SC5314] gi|46441731|gb|EAL01026.1| potential mitochondrial Complex I, NUKM_20kd subunit [Candida albicans SC5314] Length = 223 Score = 232 bits (592), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 107/163 (65%), Positives = 129/163 (79%), Gaps = 2/163 (1%) Query: 20 EKVDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRY 77 + + DF +S + +++TS+D + WAR S +TFGLACCAVEMM S PRY Sbjct: 52 QTLPTDFPLMSEKKATNAADYVLTSLDMIANWARKSSFWPVTFGLACCAVEMMHVSAPRY 111 Query: 78 DLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137 D +R G RASPRQSD+MIVAGTLTNKMA ALR+VYDQMP+P++VISMGSCANGGGYYH Sbjct: 112 DQDRLGIIFRASPRQSDIMIVAGTLTNKMAPALRQVYDQMPDPKWVISMGSCANGGGYYH 171 Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 YSYSVVRGCDR++PVDIYVPGCPPTAEAL+YG+ LQKK+ + Sbjct: 172 YSYSVVRGCDRVIPVDIYVPGCPPTAEALMYGVFQLQKKMMKT 214 >gi|238881092|gb|EEQ44730.1| NADH-ubiquinone oxidoreductase 20 kDa subunit [Candida albicans WO-1] Length = 226 Score = 232 bits (592), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 107/163 (65%), Positives = 129/163 (79%), Gaps = 2/163 (1%) Query: 20 EKVDADFSRISSE--ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRY 77 + + DF +S + +++TS+D + WAR S +TFGLACCAVEMM S PRY Sbjct: 55 QTLPTDFPLMSEKKATNAADYVLTSLDMIANWARKSSFWPVTFGLACCAVEMMHVSAPRY 114 Query: 78 DLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137 D +R G RASPRQSD+MIVAGTLTNKMA ALR+VYDQMP+P++VISMGSCANGGGYYH Sbjct: 115 DQDRLGIIFRASPRQSDIMIVAGTLTNKMAPALRQVYDQMPDPKWVISMGSCANGGGYYH 174 Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 YSYSVVRGCDR++PVDIYVPGCPPTAEAL+YG+ LQKK+ + Sbjct: 175 YSYSVVRGCDRVIPVDIYVPGCPPTAEALMYGVFQLQKKMMKT 217 >gi|119172964|ref|XP_001239009.1| NADH-ubiquinone oxidoreductase subunit [Coccidioides immitis RS] Length = 213 Score = 231 bits (590), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 110/176 (62%), Positives = 137/176 (77%), Gaps = 4/176 (2%) Query: 4 TTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLA 63 T + ++ S S +L+ V D + + + H +T+ D LV WAR GSL ++FGLA Sbjct: 32 TYIQRQPSSTWSGNALKPVKHDAEK-GAPLQH---FLTTTDNLVNWARQGSLWPLSFGLA 87 Query: 64 CCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYV 123 CC VEMM ASMPRYD +R G RASPRQ+DVM+VAGT+TNKMA ALR +YDQMP+P++V Sbjct: 88 CCGVEMMSASMPRYDQDRLGIIFRASPRQADVMLVAGTVTNKMAPALRLLYDQMPDPKWV 147 Query: 124 ISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179 ISMGSCANGGGYYHYSYSV+RG DRI+PVDIYVPGCPPT EAL+YG+ LLQK++R+ Sbjct: 148 ISMGSCANGGGYYHYSYSVLRGVDRIIPVDIYVPGCPPTPEALLYGVFLLQKRMRK 203 >gi|316969245|gb|EFV53373.1| NADH dehydrogenase I, B subunit [Trichinella spiralis] Length = 803 Score = 231 bits (588), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 105/155 (67%), Positives = 127/155 (81%), Gaps = 5/155 (3%) Query: 26 FSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA 85 F++++S + + D L+ WAR GSL +TFGLACCA+EMM + PRYD++RFG Sbjct: 356 FTKVNSA---AEYALARADDLINWARRGSLWPLTFGLACCAIEMMHFAAPRYDMDRFGIV 412 Query: 86 PRASPRQSDVMIVAGTLTNKMASALRRV--YDQMPEPRYVISMGSCANGGGYYHYSYSVV 143 RASPRQ+D MI+AGT+TNKMA ALRRV YDQMP+P++VISMGSCANGGGYYHYSYSVV Sbjct: 413 FRASPRQADCMIIAGTVTNKMAPALRRVNIYDQMPDPKWVISMGSCANGGGYYHYSYSVV 472 Query: 144 RGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 RGCDRI+PVDIYVPGCPP+AEAL+Y L LQKKI+ Sbjct: 473 RGCDRIIPVDIYVPGCPPSAEALLYAFLQLQKKIK 507 >gi|302904283|ref|XP_003049034.1| hypothetical protein NECHADRAFT_82494 [Nectria haematococca mpVI 77-13-4] gi|256729969|gb|EEU43321.1| hypothetical protein NECHADRAFT_82494 [Nectria haematococca mpVI 77-13-4] Length = 206 Score = 231 bits (588), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 108/142 (76%), Positives = 121/142 (85%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 + V S+D + WAR GSL MTFGLACCAVEMM + PRYD +RFGF RASPR +D+MI Sbjct: 55 YAVASLDIIANWARQGSLWPMTFGLACCAVEMMHIAGPRYDQDRFGFMFRASPRHADIMI 114 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGT+TNKMA ALR+VYDQM +PR+VISMGSCANGGGYYHYSYSVVRG DRIVPVDIYVP Sbjct: 115 VAGTVTNKMAPALRQVYDQMADPRWVISMGSCANGGGYYHYSYSVVRGVDRIVPVDIYVP 174 Query: 158 GCPPTAEALIYGILLLQKKIRR 179 GCPPT EALIYG+ LQ+KIRR Sbjct: 175 GCPPTCEALIYGMFQLQRKIRR 196 >gi|83775539|dbj|BAE65659.1| unnamed protein product [Aspergillus oryzae] Length = 172 Score = 230 bits (586), Expect = 7e-59, Method: Compositional matrix adjust. Identities = 109/156 (69%), Positives = 127/156 (81%), Gaps = 4/156 (2%) Query: 24 ADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFG 83 A F+ ++SEI F T++DQLV WAR SL ++FGLACCAVEMMQ SMPRYD +R G Sbjct: 11 ASFTELASEI----FSRTTIDQLVNWARQSSLWPLSFGLACCAVEMMQVSMPRYDQDRLG 66 Query: 84 FAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVV 143 RASPRQSDVM+VAGT+TNKM ALR+ YDQMP+P++VISMGSCANGGGYYHYSYSVV Sbjct: 67 IIFRASPRQSDVMVVAGTVTNKMGPALRQCYDQMPDPKWVISMGSCANGGGYYHYSYSVV 126 Query: 144 RGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179 RG DRIVPVD+Y+PGCPPT EA + GI LQKK+R Sbjct: 127 RGVDRIVPVDVYIPGCPPTPEAFLCGIFQLQKKMRH 162 >gi|320036960|gb|EFW18898.1| NADH-ubiquinone oxidoreductase 20 kDa subunit [Coccidioides posadasii str. Silveira] Length = 213 Score = 230 bits (586), Expect = 8e-59, Method: Compositional matrix adjust. Identities = 108/177 (61%), Positives = 137/177 (77%), Gaps = 4/177 (2%) Query: 4 TTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLA 63 T + ++ S + +L+ V D + + + H +T+ D LV WAR GSL ++FGLA Sbjct: 32 TYIQRQPSSTWNGNALKPVKPDAEK-GAPLQH---FLTTTDNLVNWARQGSLWPLSFGLA 87 Query: 64 CCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYV 123 CC +EMM ASMPRYD +R G RASPRQ+DVM+VAGT+TNKMA ALR +YDQMP+P++V Sbjct: 88 CCGLEMMSASMPRYDQDRLGIIFRASPRQADVMLVAGTVTNKMAPALRLLYDQMPDPKWV 147 Query: 124 ISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 ISMGSCANGGGYYHYSYSV+RG DRI+PVDIYVPGCPPT EAL+YG+ LLQK++R+ Sbjct: 148 ISMGSCANGGGYYHYSYSVLRGVDRIIPVDIYVPGCPPTPEALLYGVFLLQKRMRKT 204 >gi|303324039|ref|XP_003072007.1| NADH-ubiquinone oxidoreductase, putative [Coccidioides posadasii C735 delta SOWgp] gi|240111717|gb|EER29862.1| NADH-ubiquinone oxidoreductase, putative [Coccidioides posadasii C735 delta SOWgp] Length = 213 Score = 230 bits (586), Expect = 8e-59, Method: Compositional matrix adjust. Identities = 108/177 (61%), Positives = 137/177 (77%), Gaps = 4/177 (2%) Query: 4 TTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLA 63 T + ++ S + +L+ V D + + + H +T+ D LV WAR GSL ++FGLA Sbjct: 32 TYIQRQPSSTWNGNALKPVKPDAEK-GAPLQH---FLTTTDNLVNWARQGSLWPLSFGLA 87 Query: 64 CCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYV 123 CC +EMM ASMPRYD +R G RASPRQ+DVM+VAGT+TNKMA ALR +YDQMP+P++V Sbjct: 88 CCGLEMMSASMPRYDQDRLGIIFRASPRQADVMLVAGTVTNKMAPALRLLYDQMPDPKWV 147 Query: 124 ISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 ISMGSCANGGGYYHYSYSV+RG DRI+PVDIYVPGCPPT EAL+YG+ LLQK++R+ Sbjct: 148 ISMGSCANGGGYYHYSYSVLRGVDRIIPVDIYVPGCPPTPEALLYGVFLLQKRMRKT 204 >gi|301107924|ref|XP_002903044.1| NADH ubiquinone oxidoreductase, putative [Phytophthora infestans T30-4] gi|262098162|gb|EEY56214.1| NADH ubiquinone oxidoreductase, putative [Phytophthora infestans T30-4] Length = 213 Score = 230 bits (586), Expect = 8e-59, Method: Compositional matrix adjust. Identities = 103/141 (73%), Positives = 120/141 (85%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 + V+ +D LV W R SL ++FGLACCAVEMM A+ RYD ER G RASPRQ+DVMI Sbjct: 62 YAVSRLDDLVNWGRKSSLWPISFGLACCAVEMMHAAGSRYDFERMGMVFRASPRQTDVMI 121 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGTLTNKMA ALRR+YDQMPEPRYV+S+GSCANGGGYYHYSY+V RG DR+VPVDIYVP Sbjct: 122 VAGTLTNKMAPALRRIYDQMPEPRYVVSLGSCANGGGYYHYSYAVARGVDRVVPVDIYVP 181 Query: 158 GCPPTAEALIYGILLLQKKIR 178 GCPPT+EALI+G++ LQKKI+ Sbjct: 182 GCPPTSEALIFGLMQLQKKIK 202 >gi|257437224|gb|ACV53599.1| NADH ubiqionone oxidoreductase chain B [Agrobacterium sp. ATCC 31749] Length = 121 Score = 230 bits (586), Expect = 8e-59, Method: Compositional matrix adjust. Identities = 108/121 (89%), Positives = 115/121 (95%), Gaps = 1/121 (0%) Query: 40 VTSVDQLVTWARTGSLMWMTFGLACCAVE-MMQASMPRYDLERFGFAPRASPRQSDVMIV 98 VTS D+L+TWARTGSLMWM FGLACCAVE +MQAS PRYD+ERFG APRASPRQSDVMIV Sbjct: 1 VTSTDELITWARTGSLMWMQFGLACCAVEGLMQASGPRYDMERFGVAPRASPRQSDVMIV 60 Query: 99 AGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPG 158 AGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSY+VVRGCDR+VPVDIYVPG Sbjct: 61 AGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYAVVRGCDRVVPVDIYVPG 120 Query: 159 C 159 C Sbjct: 121 C 121 >gi|237746750|ref|ZP_04577230.1| NADH-quinone oxidoreductase subunit B [Oxalobacter formigenes HOxBLS] gi|229378101|gb|EEO28192.1| NADH-quinone oxidoreductase subunit B [Oxalobacter formigenes HOxBLS] Length = 159 Score = 229 bits (585), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 105/151 (69%), Positives = 127/151 (84%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 + +KGF+ T++D + W RTGS+ ++FGLACCA+EMM +S RYD++RFG RASPRQ Sbjct: 6 LLNKGFVTTTLDTAINWLRTGSVWPVSFGLACCAIEMMHSSASRYDMDRFGTFFRASPRQ 65 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 SD+MIVAGTL NKMA ALR+VYDQM EPR+V+SMGSCANGGGYYH SYSVVRGCDRIVPV Sbjct: 66 SDLMIVAGTLCNKMAPALRKVYDQMAEPRWVVSMGSCANGGGYYHDSYSVVRGCDRIVPV 125 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 DIYVPGCPPTAEAL+Y ++ L+ KIRR + Sbjct: 126 DIYVPGCPPTAEALLYALMQLRGKIRRTSTI 156 >gi|302928116|ref|XP_003054637.1| hypothetical protein NECHADRAFT_73438 [Nectria haematococca mpVI 77-13-4] gi|256735578|gb|EEU48924.1| hypothetical protein NECHADRAFT_73438 [Nectria haematococca mpVI 77-13-4] Length = 221 Score = 229 bits (585), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 103/141 (73%), Positives = 121/141 (85%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 + +T++D++ WAR GS +TFGLACC +EMM SMPRYD +R G RASPRQSDVMI Sbjct: 69 YALTTLDKIAAWARNGSFWPLTFGLACCGIEMMHVSMPRYDQDRLGIIFRASPRQSDVMI 128 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGT+TNKMA+A+R YDQMPEPR+VISMGSCANGGGYYHYSYSV+RG DRI+PVDIYVP Sbjct: 129 VAGTVTNKMATAVRLCYDQMPEPRWVISMGSCANGGGYYHYSYSVLRGVDRILPVDIYVP 188 Query: 158 GCPPTAEALIYGILLLQKKIR 178 GCPPTAEAL+YG+ LQ+KIR Sbjct: 189 GCPPTAEALMYGVFQLQRKIR 209 >gi|259486449|tpe|CBF84294.1| TPA: hypothetical protein ANIA_11251 [Aspergillus nidulans FGSC A4] Length = 211 Score = 229 bits (583), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 104/142 (73%), Positives = 119/142 (83%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 +++T D L++WAR GS ++F LACC VEMM SMPRYD +R G RASPRQ+DVMI Sbjct: 60 YVLTKTDALISWARNGSFWPLSFALACCGVEMMHTSMPRYDQDRLGIIFRASPRQADVMI 119 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGTLTNKMA ALR++YDQMPEPR+VISMGSCANGGGYYHYSYSVVRG DRIVPVD+YVP Sbjct: 120 VAGTLTNKMAPALRQLYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGVDRIVPVDVYVP 179 Query: 158 GCPPTAEALIYGILLLQKKIRR 179 GCPP EAL+ GI LQ+KIRR Sbjct: 180 GCPPMPEALLQGIFTLQRKIRR 201 >gi|258568476|ref|XP_002584982.1| NADH-ubiquinone oxidoreductase 19.3 kDa subunit [Uncinocarpus reesii 1704] gi|237906428|gb|EEP80829.1| NADH-ubiquinone oxidoreductase 19.3 kDa subunit [Uncinocarpus reesii 1704] Length = 176 Score = 229 bits (583), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 110/144 (76%), Positives = 121/144 (84%), Gaps = 3/144 (2%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 F +T++DQ+ WAR SL MTFGLACCAVEMM S PRYD +R G RASPRQSDVMI Sbjct: 22 FALTTLDQVANWARQSSLWPMTFGLACCAVEMMHLSTPRYDQDRLGIIFRASPRQSDVMI 81 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGTLTNKMA ALR+VYDQMP+PR+VISMGSCANGGGYYHYSYSV RGCDRIVPVDIYVP Sbjct: 82 VAGTLTNKMAPALRQVYDQMPDPRWVISMGSCANGGGYYHYSYSVTRGCDRIVPVDIYVP 141 Query: 158 GC---PPTAEALIYGILLLQKKIR 178 G PPT+EAL+YGI LQKK+R Sbjct: 142 GSLKGPPTSEALMYGIFQLQKKMR 165 >gi|260940357|ref|XP_002614478.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720] gi|238851664|gb|EEQ41128.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720] Length = 208 Score = 228 bits (581), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 105/142 (73%), Positives = 120/142 (84%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 + +TS+D + WAR S +TFGLACCAVEMM S PRYD +R G RASPRQSD+MI Sbjct: 57 YALTSLDAIAMWARKSSFWPVTFGLACCAVEMMHVSTPRYDQDRLGIIFRASPRQSDIMI 116 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGTLTNKMA ALR+VYDQM +PR+VISMGSCANGGGYYHYSYSVVRGCDR+VPVDIYVP Sbjct: 117 VAGTLTNKMAPALRQVYDQMADPRWVISMGSCANGGGYYHYSYSVVRGCDRVVPVDIYVP 176 Query: 158 GCPPTAEALIYGILLLQKKIRR 179 GCPPTAEAL+YG+ LQKK+ + Sbjct: 177 GCPPTAEALMYGVFQLQKKMMK 198 >gi|315051282|ref|XP_003175015.1| NADH-ubiquinone oxidoreductase subunit [Arthroderma gypseum CBS 118893] gi|311340330|gb|EFQ99532.1| NADH-ubiquinone oxidoreductase subunit [Arthroderma gypseum CBS 118893] Length = 191 Score = 228 bits (581), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 106/160 (66%), Positives = 126/160 (78%) Query: 20 EKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDL 79 ++++ E T +VT +DQ+ WAR GSL + FGLACC VEMM SMPRYDL Sbjct: 22 KRLEVPLPSQGEEPTPLRHMVTKLDQITNWARQGSLWPLMFGLACCGVEMMALSMPRYDL 81 Query: 80 ERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS 139 +R G RASPRQ+DV+IV+GT+TNKM ALR +YDQMP+P++VISMGSCANGGGYYHYS Sbjct: 82 DRMGIIYRASPRQADVLIVSGTVTNKMGPALRLLYDQMPDPKWVISMGSCANGGGYYHYS 141 Query: 140 YSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179 YSVVRG DR+VPVD+YVPGCPPTAEA +YGIL LQKKI R Sbjct: 142 YSVVRGVDRLVPVDVYVPGCPPTAEAFMYGILQLQKKISR 181 >gi|270008238|gb|EFA04686.1| hypothetical protein TcasGA2_TC014482 [Tribolium castaneum] Length = 204 Score = 228 bits (581), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 101/147 (68%), Positives = 127/147 (86%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 +++ +D L+ W R S+ +TFGLACCA+EMM + PRYD++R+G RASPRQ++V+I Sbjct: 51 WVLARLDDLLNWGRKTSMWPLTFGLACCAIEMMHIAAPRYDMDRYGVVFRASPRQTEVII 110 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGT+TNKMA++LR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGC+RI+PVDIYVP Sbjct: 111 VAGTVTNKMAASLRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCNRIIPVDIYVP 170 Query: 158 GCPPTAEALIYGILLLQKKIRRVGNVK 184 GCPPTAEAL+YGIL LQKK+ R ++ Sbjct: 171 GCPPTAEALMYGILQLQKKVNRHNAIQ 197 >gi|332255974|ref|XP_003277096.1| PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial-like [Nomascus leucogenys] Length = 156 Score = 228 bits (580), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 108/126 (85%), Positives = 116/126 (92%) Query: 54 SLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRV 113 SL MTFGLACCAVEMM + PRYD++RFG RASPRQSDVMIVAGTLTNKMA ALR+V Sbjct: 21 SLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQSDVMIVAGTLTNKMAPALRKV 80 Query: 114 YDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLL 173 YDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY+PGCPPTAEAL+YGIL L Sbjct: 81 YDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYIPGCPPTAEALLYGILQL 140 Query: 174 QKKIRR 179 Q+KI+R Sbjct: 141 QRKIKR 146 >gi|242765656|ref|XP_002341019.1| NADH-ubiquinone oxidoreductase subunit B, putative [Talaromyces stipitatus ATCC 10500] gi|218724215|gb|EED23632.1| NADH-ubiquinone oxidoreductase subunit B, putative [Talaromyces stipitatus ATCC 10500] Length = 247 Score = 228 bits (580), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 111/162 (68%), Positives = 123/162 (75%), Gaps = 21/162 (12%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 + +T++DQ+ WAR SL MTFGLACCAVEMM S PRYD +R G RASPRQSDVMI Sbjct: 75 YALTTLDQIANWARQSSLWPMTFGLACCAVEMMHLSTPRYDQDRLGIIFRASPRQSDVMI 134 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGTLTNKMA ALR+VYDQMP+PR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP Sbjct: 135 VAGTLTNKMAPALRQVYDQMPDPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 194 Query: 158 GC---------------------PPTAEALIYGILLLQKKIR 178 GC PPT+EAL+YGI LQKK+R Sbjct: 195 GCKFDILLMLKLSLILIERHLKGPPTSEALMYGIFQLQKKMR 236 >gi|242015738|ref|XP_002428504.1| NADH-ubiquinone oxidoreductase 20 kDa subunit, putative [Pediculus humanus corporis] gi|212513138|gb|EEB15766.1| NADH-ubiquinone oxidoreductase 20 kDa subunit, putative [Pediculus humanus corporis] Length = 214 Score = 227 bits (579), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 100/141 (70%), Positives = 120/141 (85%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 +++ D + WAR S+ +TFGLACCAVEMM + PRYD++RFG RASPRQ+D++I Sbjct: 63 YVLARTDDFINWARKSSIFPLTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQADLII 122 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGTLTNKMA LR++YDQM P++VISMGSCANGGGYYHYSYSVVRGCDRI+PVDIYVP Sbjct: 123 VAGTLTNKMAPLLRKIYDQMLSPKWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVP 182 Query: 158 GCPPTAEALIYGILLLQKKIR 178 GCPPTAEAL+Y +LLLQKKI+ Sbjct: 183 GCPPTAEALLYAVLLLQKKIK 203 >gi|317158068|ref|XP_001826792.2| NADH dehydrogenase [ubiquinone] iron-sulfur protein 7 [Aspergillus oryzae RIB40] Length = 190 Score = 227 bits (579), Expect = 5e-58, Method: Compositional matrix adjust. Identities = 107/156 (68%), Positives = 125/156 (80%), Gaps = 3/156 (1%) Query: 27 SRISSEITHKG---FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFG 83 S I + TH ++T++DQLV WAR SL ++FGLACCAVEMMQ SMPRYD +R G Sbjct: 25 SIIKTNGTHSNKAEHVLTTIDQLVNWARQSSLWPLSFGLACCAVEMMQVSMPRYDQDRLG 84 Query: 84 FAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVV 143 RASPRQSDVM+VAGT+TNKM ALR+ YDQMP+P++VISMGSCANGGGYYHYSYSVV Sbjct: 85 IIFRASPRQSDVMVVAGTVTNKMGPALRQCYDQMPDPKWVISMGSCANGGGYYHYSYSVV 144 Query: 144 RGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179 RG DRIVPVD+Y+PGCPPT EA + GI LQKK+R Sbjct: 145 RGVDRIVPVDVYIPGCPPTPEAFLCGIFQLQKKMRH 180 >gi|255941166|ref|XP_002561352.1| Pc16g10420 [Penicillium chrysogenum Wisconsin 54-1255] gi|211585975|emb|CAP93712.1| Pc16g10420 [Penicillium chrysogenum Wisconsin 54-1255] Length = 209 Score = 227 bits (579), Expect = 5e-58, Method: Compositional matrix adjust. Identities = 106/143 (74%), Positives = 123/143 (86%), Gaps = 1/143 (0%) Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVM 96 G+L+ + DQLV W R GSL ++FGLACC +EMM SMPRYD +R G RASPRQ+DVM Sbjct: 58 GYLLYA-DQLVNWGRQGSLWPLSFGLACCGIEMMHTSMPRYDQDRLGIIFRASPRQADVM 116 Query: 97 IVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV 156 IVAGT+ NKMA A+R++YDQMPEP++VISMGSCANGGGYYHYSY+VVRG DRIVPVDIYV Sbjct: 117 IVAGTVVNKMAPAVRQLYDQMPEPKWVISMGSCANGGGYYHYSYNVVRGVDRIVPVDIYV 176 Query: 157 PGCPPTAEALIYGILLLQKKIRR 179 PGCPPTAEAL+ GI LLQKK+RR Sbjct: 177 PGCPPTAEALLQGIFLLQKKMRR 199 >gi|149034570|gb|EDL89307.1| NADH dehydrogenase (ubiquinone) Fe-S protein 7, isoform CRA_c [Rattus norvegicus] Length = 132 Score = 227 bits (579), Expect = 5e-58, Method: Compositional matrix adjust. Identities = 106/127 (83%), Positives = 116/127 (91%) Query: 58 MTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQM 117 MTFGLACCAVEMM + PRYD++RFG RASPRQ+DVMIVAGTLTNKMA ALR+VYDQM Sbjct: 1 MTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQADVMIVAGTLTNKMAPALRKVYDQM 60 Query: 118 PEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 PEPRYV+SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQ+KI Sbjct: 61 PEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQRKI 120 Query: 178 RRVGNVK 184 +R +K Sbjct: 121 KREQKLK 127 >gi|159124830|gb|EDP49948.1| NADH-ubiquinone oxidoreductase subunit B, putative [Aspergillus fumigatus A1163] Length = 225 Score = 226 bits (576), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 103/142 (72%), Positives = 123/142 (86%) Query: 39 LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIV 98 ++T+ D L+ WAR GSL ++FGLACC VEMM ASMPRYD +R G RASPRQ+DVM+V Sbjct: 75 ILTTTDSLINWARQGSLWPLSFGLACCGVEMMAASMPRYDQDRQGIIFRASPRQADVMLV 134 Query: 99 AGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPG 158 AGT+TNKMA ALR++YDQMP+P++VISMGSCANGGGYYH+SYSVVRG DR+VPVDIYVPG Sbjct: 135 AGTVTNKMAPALRQLYDQMPDPKWVISMGSCANGGGYYHHSYSVVRGVDRLVPVDIYVPG 194 Query: 159 CPPTAEALIYGILLLQKKIRRV 180 CPPT EAL+YGIL L++KI R Sbjct: 195 CPPTPEALLYGILQLKRKIERT 216 >gi|72004758|ref|XP_780430.1| PREDICTED: similar to NADH-plastoquinone oxidoreductase [Strongylocentrotus purpuratus] gi|115948827|ref|XP_001196650.1| PREDICTED: similar to NADH-plastoquinone oxidoreductase [Strongylocentrotus purpuratus] Length = 132 Score = 226 bits (576), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 105/126 (83%), Positives = 115/126 (91%) Query: 58 MTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQM 117 MT GLACCAVEMM + PRYD++RFG RASPRQSDVMIVAGTLTNKMA ALR+VYDQM Sbjct: 1 MTLGLACCAVEMMHFAAPRYDMDRFGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQM 60 Query: 118 PEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 PEPR+VISMGSCANGGGYYHYSY+VVRGCDRIVPVDIYVPGCPPTAEAL+YG+L LQKKI Sbjct: 61 PEPRWVISMGSCANGGGYYHYSYAVVRGCDRIVPVDIYVPGCPPTAEALLYGVLQLQKKI 120 Query: 178 RRVGNV 183 +R N+ Sbjct: 121 KRAQNI 126 >gi|50423781|ref|XP_460475.1| DEHA2F02552p [Debaryomyces hansenii CBS767] gi|49656144|emb|CAG88782.1| DEHA2F02552p [Debaryomyces hansenii] Length = 208 Score = 226 bits (576), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 105/157 (66%), Positives = 125/157 (79%), Gaps = 2/157 (1%) Query: 25 DFSRISSEITHK--GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82 DF +S + + +TS+D + WAR S +TFGLACCAVEMM S PRYD +R Sbjct: 42 DFPLMSQKTASAPVDYALTSLDAIANWARKSSFWPVTFGLACCAVEMMHVSTPRYDQDRL 101 Query: 83 GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142 G RASPRQSD+MIVAGT+TNKMA ALR+VYDQM +PR+VISMGSCANGGGYYHYSYSV Sbjct: 102 GIIFRASPRQSDIMIVAGTVTNKMAPALRQVYDQMADPRWVISMGSCANGGGYYHYSYSV 161 Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179 VRGCDR++PVD+YVPGCPPTAEAL+YG+ LQKK+ + Sbjct: 162 VRGCDRLIPVDVYVPGCPPTAEALMYGVFQLQKKMMK 198 >gi|91083385|ref|XP_967426.1| PREDICTED: similar to NADH-ubiquinone oxidoreductase, partial [Tribolium castaneum] Length = 227 Score = 226 bits (575), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 100/140 (71%), Positives = 124/140 (88%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 +++ +D L+ W R S+ +TFGLACCA+EMM + PRYD++R+G RASPRQ++V+I Sbjct: 43 WVLARLDDLLNWGRKTSMWPLTFGLACCAIEMMHIAAPRYDMDRYGVVFRASPRQTEVII 102 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGT+TNKMA++LR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGC+RI+PVDIYVP Sbjct: 103 VAGTVTNKMAASLRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCNRIIPVDIYVP 162 Query: 158 GCPPTAEALIYGILLLQKKI 177 GCPPTAEAL+YGIL LQKK+ Sbjct: 163 GCPPTAEALMYGILQLQKKV 182 >gi|29841262|gb|AAP06294.1| similar to probable NADH-ubiquinone oxidoreductase 20 kDa subunit precursor; complex I-20kC; CI-20KD [Schistosoma japonicum] gi|226470044|emb|CAX70303.1| NADH dehydrogenase (ubiquinone) Fe-S protein 7 [Schistosoma japonicum] Length = 207 Score = 226 bits (575), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 101/147 (68%), Positives = 125/147 (85%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 F++T +D L WAR S+ +TFGLACCAVEMM + PRYD++R+G RASPRQ+D+MI Sbjct: 56 FVLTRLDDLANWARKNSIYPLTFGLACCAVEMMHIAGPRYDMDRYGVVFRASPRQADLMI 115 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 V+GT+TNKMA ALRR+YDQM P++VISMGSCANGGGYYHYSYSV+RGCDR++PVDIYVP Sbjct: 116 VSGTVTNKMAPALRRIYDQMTHPKWVISMGSCANGGGYYHYSYSVLRGCDRVIPVDIYVP 175 Query: 158 GCPPTAEALIYGILLLQKKIRRVGNVK 184 GCPP+AEAL+Y IL LQKKI+ +V+ Sbjct: 176 GCPPSAEALMYSILQLQKKIKSEKHVQ 202 >gi|307006579|gb|ADN23574.1| NADH-ubiquinone oxidoreductase NUFS7/PSST/20 kDa subunit [Hyalomma marginatum rufipes] Length = 182 Score = 226 bits (575), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 103/144 (71%), Positives = 122/144 (84%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 F + D ++ W R SL +TFGLACCAVEMM + PRYD++R+G RASPRQ+DV+I Sbjct: 31 FALARADDILAWGRKTSLWPLTFGLACCAVEMMHIAAPRYDMDRYGVVFRASPRQADVII 90 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGT+TNKMA ALR+VYDQM EP++VIS GSCANGGGYYHYSYSVVRGCDRI+PVDIYVP Sbjct: 91 VAGTVTNKMAPALRKVYDQMLEPKWVISTGSCANGGGYYHYSYSVVRGCDRIIPVDIYVP 150 Query: 158 GCPPTAEALIYGILLLQKKIRRVG 181 GCPPTAEAL+YGIL LQ+KI+R+ Sbjct: 151 GCPPTAEALMYGILQLQRKIKRLN 174 >gi|226470042|emb|CAX70302.1| NADH dehydrogenase (ubiquinone) Fe-S protein 7 [Schistosoma japonicum] gi|226489138|emb|CAX74918.1| NADH dehydrogenase (ubiquinone) Fe-S protein 7 [Schistosoma japonicum] Length = 207 Score = 226 bits (575), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 101/147 (68%), Positives = 125/147 (85%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 F++T +D L WAR S+ +TFGLACCAVEMM + PRYD++R+G RASPRQ+D+MI Sbjct: 56 FVLTRLDDLANWARKNSIYPLTFGLACCAVEMMHIAGPRYDMDRYGVVFRASPRQADLMI 115 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 V+GT+TNKMA ALRR+YDQM P++VISMGSCANGGGYYHYSYSV+RGCDR++PVDIYVP Sbjct: 116 VSGTVTNKMAPALRRIYDQMTHPKWVISMGSCANGGGYYHYSYSVLRGCDRVIPVDIYVP 175 Query: 158 GCPPTAEALIYGILLLQKKIRRVGNVK 184 GCPP+AEAL+Y IL LQKKI+ +V+ Sbjct: 176 GCPPSAEALMYSILQLQKKIKSEKHVQ 202 >gi|146421276|ref|XP_001486588.1| conserved hypothetical protein [Meyerozyma guilliermondii ATCC 6260] gi|146390003|gb|EDK38161.1| conserved hypothetical protein [Meyerozyma guilliermondii ATCC 6260] Length = 210 Score = 226 bits (575), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 103/142 (72%), Positives = 120/142 (84%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 +++TS+D + WAR S +TFGLACCAVEMM S PRYD +R G RASPRQSDVMI Sbjct: 59 YVLTSLDTIANWARKSSFWPVTFGLACCAVEMMHVSAPRYDQDRLGIIFRASPRQSDVMI 118 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGT+TNKM ALR+VYDQM +PR+VISMGSCANGGGYYHYSYSVVRGCDR++PVD+YVP Sbjct: 119 VAGTVTNKMGPALRQVYDQMADPRWVISMGSCANGGGYYHYSYSVVRGCDRLIPVDVYVP 178 Query: 158 GCPPTAEALIYGILLLQKKIRR 179 GCPPTAEAL+YG+ LQKK+ R Sbjct: 179 GCPPTAEALMYGVFRLQKKMMR 200 >gi|320580734|gb|EFW94956.1| NADH-ubiquinone oxidoreductase subunit [Pichia angusta DL-1] Length = 193 Score = 225 bits (574), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 107/140 (76%), Positives = 116/140 (82%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 + TS D+L WAR S TFGLACCAVEMM S PRYD +R G RASPRQSDVMI Sbjct: 41 YAFTSFDKLKNWARKSSFWPATFGLACCAVEMMHVSAPRYDQDRLGIIFRASPRQSDVMI 100 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGT+TNKMA ALR+VYDQMP PR+VISMGSCANGGGYYHYSYSVVRG DRIVPVDIYVP Sbjct: 101 VAGTVTNKMAPALRQVYDQMPYPRWVISMGSCANGGGYYHYSYSVVRGVDRIVPVDIYVP 160 Query: 158 GCPPTAEALIYGILLLQKKI 177 GCPP++EAL+YGI LQKKI Sbjct: 161 GCPPSSEALMYGIFRLQKKI 180 >gi|156384021|ref|XP_001633130.1| predicted protein [Nematostella vectensis] gi|156220196|gb|EDO41067.1| predicted protein [Nematostella vectensis] Length = 209 Score = 225 bits (573), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 100/142 (70%), Positives = 123/142 (86%) Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVM 96 G++VT +D LV W+R SL + FGLACC +EMM + PRYD++RFG RASPRQ DVM Sbjct: 56 GYVVTKLDDLVNWSRRSSLWPLMFGLACCGIEMMHFAAPRYDMDRFGVVFRASPRQIDVM 115 Query: 97 IVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV 156 +V+GT+TNKMA ALRR+YDQMPEPR+VIS+GSCAN GGYY++SYSVVRGCDRI+PVDIYV Sbjct: 116 LVSGTVTNKMAPALRRLYDQMPEPRWVISVGSCANSGGYYYHSYSVVRGCDRIIPVDIYV 175 Query: 157 PGCPPTAEALIYGILLLQKKIR 178 PGCPP+AEAL++G+L LQKK+R Sbjct: 176 PGCPPSAEALLFGVLQLQKKVR 197 >gi|328353181|emb|CCA39579.1| NADH dehydrogenase (ubiquinone) Fe-S protein 7 [Pichia pastoris CBS 7435] Length = 282 Score = 225 bits (573), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 104/140 (74%), Positives = 117/140 (83%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 + T+ D++ WAR S MTFGLACCAVEMM S PRYD +R G RASPRQSD+MI Sbjct: 130 YTFTTFDKMKNWARKSSFWPMTFGLACCAVEMMHVSAPRYDQDRLGIIFRASPRQSDIMI 189 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGT+TNKMA ALR+VYDQMP PR+VISMGSCANGGGYYHYSYSVVRG DRIVPVDIYVP Sbjct: 190 VAGTVTNKMAPALRQVYDQMPYPRWVISMGSCANGGGYYHYSYSVVRGVDRIVPVDIYVP 249 Query: 158 GCPPTAEALIYGILLLQKKI 177 GCPPT+EAL+YG+ LQKK+ Sbjct: 250 GCPPTSEALMYGVFQLQKKM 269 >gi|254571403|ref|XP_002492811.1| hypothetical protein [Pichia pastoris GS115] gi|238032609|emb|CAY70632.1| Hypothetical protein PAS_chr3_0585 [Pichia pastoris GS115] gi|308152254|emb|CBI83546.1| NUKM (PSST) subunit of mitochondrial NADH:ubiquinone oxidoreductase (complex I) [Pichia pastoris] Length = 204 Score = 225 bits (573), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 104/140 (74%), Positives = 117/140 (83%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 + T+ D++ WAR S MTFGLACCAVEMM S PRYD +R G RASPRQSD+MI Sbjct: 52 YTFTTFDKMKNWARKSSFWPMTFGLACCAVEMMHVSAPRYDQDRLGIIFRASPRQSDIMI 111 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGT+TNKMA ALR+VYDQMP PR+VISMGSCANGGGYYHYSYSVVRG DRIVPVDIYVP Sbjct: 112 VAGTVTNKMAPALRQVYDQMPYPRWVISMGSCANGGGYYHYSYSVVRGVDRIVPVDIYVP 171 Query: 158 GCPPTAEALIYGILLLQKKI 177 GCPPT+EAL+YG+ LQKK+ Sbjct: 172 GCPPTSEALMYGVFQLQKKM 191 >gi|119497569|ref|XP_001265543.1| NADH-ubiquinone oxidoreductase subunit B, putative [Neosartorya fischeri NRRL 181] gi|119413705|gb|EAW23646.1| NADH-ubiquinone oxidoreductase subunit B, putative [Neosartorya fischeri NRRL 181] Length = 226 Score = 224 bits (570), Expect = 5e-57, Method: Compositional matrix adjust. Identities = 102/142 (71%), Positives = 121/142 (85%) Query: 39 LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIV 98 ++T+ D L+ WAR GS + FGLACC VEMM ASMPRYD +R G RASPRQ+DVMIV Sbjct: 76 ILTTTDSLINWARQGSFWPLAFGLACCGVEMMAASMPRYDQDRQGIIFRASPRQADVMIV 135 Query: 99 AGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPG 158 +GT+TNKMA ALR++YDQMP+P++VISMGSCANGGGYYH+SYSVVRG DR+VPVDIYVPG Sbjct: 136 SGTVTNKMAPALRQLYDQMPDPKWVISMGSCANGGGYYHHSYSVVRGVDRLVPVDIYVPG 195 Query: 159 CPPTAEALIYGILLLQKKIRRV 180 CPPT EAL+YGIL L++KI R Sbjct: 196 CPPTPEALLYGILQLKRKIERT 217 >gi|121714236|ref|XP_001274729.1| NADH-ubiquinone oxidoreductase subunit B, putative [Aspergillus clavatus NRRL 1] gi|119402882|gb|EAW13303.1| NADH-ubiquinone oxidoreductase subunit B, putative [Aspergillus clavatus NRRL 1] Length = 225 Score = 223 bits (569), Expect = 7e-57, Method: Compositional matrix adjust. Identities = 101/140 (72%), Positives = 120/140 (85%) Query: 39 LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIV 98 ++T+ D L+ WAR GSL + FGLACC VEMM ASMPRYD +R G RASPRQ+DVMIV Sbjct: 75 ILTTTDALINWARQGSLWPLAFGLACCGVEMMAASMPRYDQDRQGIIFRASPRQADVMIV 134 Query: 99 AGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPG 158 AGT+TNKMA ALR++YDQMP+P++VISMGSCANGGGYYH+SYSVVRG DR+VPVDIYVPG Sbjct: 135 AGTVTNKMAPALRQLYDQMPDPKWVISMGSCANGGGYYHHSYSVVRGVDRLVPVDIYVPG 194 Query: 159 CPPTAEALIYGILLLQKKIR 178 CPPT EAL+Y + LQ+K+R Sbjct: 195 CPPTPEALLYAVFQLQRKMR 214 >gi|296811983|ref|XP_002846329.1| NADH:ubiquinone oxidoreductase kD subunit [Arthroderma otae CBS 113480] gi|238841585|gb|EEQ31247.1| NADH:ubiquinone oxidoreductase kD subunit [Arthroderma otae CBS 113480] Length = 197 Score = 223 bits (569), Expect = 8e-57, Method: Compositional matrix adjust. Identities = 100/140 (71%), Positives = 120/140 (85%) Query: 39 LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIV 98 ++T DQ+ WAR GSL +TFGLACC VEMM SMPRYDL+R G RASPRQ+DV+IV Sbjct: 47 VLTKFDQIANWARQGSLWPLTFGLACCGVEMMAVSMPRYDLDRMGIFYRASPRQADVLIV 106 Query: 99 AGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPG 158 +GT+TNKM A+R +YDQMP+P++VISMGSCANGGGYYHYSYSVVRG DR++PVD+YVPG Sbjct: 107 SGTVTNKMGPAIRLLYDQMPDPKWVISMGSCANGGGYYHYSYSVVRGVDRLLPVDVYVPG 166 Query: 159 CPPTAEALIYGILLLQKKIR 178 CPPTAEA +YG+L LQKKI+ Sbjct: 167 CPPTAEAFLYGVLQLQKKIK 186 >gi|156351435|ref|XP_001622510.1| hypothetical protein NEMVEDRAFT_v1g220626 [Nematostella vectensis] gi|156209067|gb|EDO30410.1| predicted protein [Nematostella vectensis] Length = 133 Score = 223 bits (568), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 102/121 (84%), Positives = 113/121 (93%) Query: 58 MTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQM 117 MTFGLACCAVEMM + PRYD++RFG RASPRQ+DVMIVAGTLTNKMA ALR+VYDQM Sbjct: 1 MTFGLACCAVEMMHFAAPRYDMDRFGVVFRASPRQADVMIVAGTLTNKMAPALRKVYDQM 60 Query: 118 PEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 PEPR+VISMGSCANGGGYYHYSYSVVRGCDR++PVDIYVPGCPPTAEAL+YG+L LQKK+ Sbjct: 61 PEPRWVISMGSCANGGGYYHYSYSVVRGCDRVIPVDIYVPGCPPTAEALLYGVLQLQKKV 120 Query: 178 R 178 R Sbjct: 121 R 121 >gi|170592879|ref|XP_001901192.1| Probable NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrialprecursor [Brugia malayi] gi|158591259|gb|EDP29872.1| Probable NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrialprecursor , putative [Brugia malayi] Length = 216 Score = 223 bits (567), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 105/140 (75%), Positives = 120/140 (85%) Query: 40 VTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVA 99 VT +D L SL MTFGLACCAVEMM + PRYD++RFG RASPRQSDVMIVA Sbjct: 67 VTRLDDLNNMIHRCSLWPMTFGLACCAVEMMHFAAPRYDMDRFGVVFRASPRQSDVMIVA 126 Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGC 159 GT+TNKMA A+RRVYDQMPEP++VISMGSCANGGGYYHYSYSV++G DRI+PVDIYVPGC Sbjct: 127 GTVTNKMAPAVRRVYDQMPEPKWVISMGSCANGGGYYHYSYSVLKGVDRIIPVDIYVPGC 186 Query: 160 PPTAEALIYGILLLQKKIRR 179 PP+AEAL+YG+L LQKKI+R Sbjct: 187 PPSAEALLYGVLQLQKKIKR 206 >gi|312077007|ref|XP_003141114.1| NADH-ubiquinone oxidoreductase Fe-S protein 7 [Loa loa] gi|307763722|gb|EFO22956.1| NADH-ubiquinone oxidoreductase Fe-S protein 7 [Loa loa] Length = 204 Score = 221 bits (564), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 105/144 (72%), Positives = 120/144 (83%) Query: 40 VTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVA 99 VT +D L SL MTFGLACCAVEMM + PRYD++RFG RASPRQSDVMIVA Sbjct: 61 VTRLDDLNNMIHRSSLWPMTFGLACCAVEMMHFAAPRYDMDRFGVVFRASPRQSDVMIVA 120 Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGC 159 GT+TNKMA A+RRVYDQMPEP++VISMGSCANGGGYYHYSYSV++G DRI+PVDIYVPGC Sbjct: 121 GTVTNKMAPAVRRVYDQMPEPKWVISMGSCANGGGYYHYSYSVLKGVDRIIPVDIYVPGC 180 Query: 160 PPTAEALIYGILLLQKKIRRVGNV 183 PP+AEAL+YG+L LQKK+ G V Sbjct: 181 PPSAEALLYGVLQLQKKLSGNGRV 204 >gi|256088165|ref|XP_002580226.1| NADH-plastoquinone oxidoreductase [Schistosoma mansoni] gi|238665746|emb|CAZ36465.1| NADH-plastoquinone oxidoreductase, putative [Schistosoma mansoni] Length = 207 Score = 221 bits (564), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 99/147 (67%), Positives = 123/147 (83%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 +++T +D L WAR S+ +TFGLACCAVEMM + PRYD++R+G RASPRQ+D++I Sbjct: 56 YVITRLDDLADWARKNSIYPLTFGLACCAVEMMHIAGPRYDMDRYGVVFRASPRQADLLI 115 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 V+GT+TNKMA AL R+Y QM +P++VISMGSCANGGGYYHYSYSVVRGCDRI+PVDIYVP Sbjct: 116 VSGTVTNKMAPALHRIYSQMTQPKWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVP 175 Query: 158 GCPPTAEALIYGILLLQKKIRRVGNVK 184 GCPP+AEAL+Y IL LQKKI+ + K Sbjct: 176 GCPPSAEALMYSILQLQKKIKSEKHFK 202 >gi|299830273|ref|YP_003734437.1| NADH dehydrogenase subunit 10 [Paramecium caudatum] gi|299507832|emb|CAZ66816.1| NADH dehydrogenase subunit 10 [Paramecium caudatum] Length = 154 Score = 221 bits (564), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 97/147 (65%), Positives = 124/147 (84%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 FL TS + L++WAR GS +TFGLACCA+EMM A++ RYD +RFG RA+PRQSD++I Sbjct: 5 FLKTSANNLISWARQGSFWPLTFGLACCALEMMHATVSRYDFDRFGVIFRATPRQSDLII 64 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGT+TNKMA ALRR+YDQ +P++V+SMGSCANGGGYYHYSY+VV+GCD+I+PVDI+VP Sbjct: 65 VAGTVTNKMAPALRRLYDQTADPKWVLSMGSCANGGGYYHYSYAVVKGCDKIIPVDIFVP 124 Query: 158 GCPPTAEALIYGILLLQKKIRRVGNVK 184 GCPP+AEAL +G+L LQK + + N K Sbjct: 125 GCPPSAEALFFGVLQLQKTLMKTINEK 151 >gi|17509685|ref|NP_492445.1| NADH Ubiquinone oxidoreductase Fe-S protein family member (nduf-7) [Caenorhabditis elegans] gi|3024249|sp|Q94360|NDUS7_CAEEL RecName: Full=Probable NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial; AltName: Full=Complex I-20kD; Short=CI-20kD; AltName: Full=NADH-ubiquinone oxidoreductase 20 kDa subunit; Flags: Precursor gi|3880584|emb|CAB02132.1| C. elegans protein W10D5.2, confirmed by transcript evidence [Caenorhabditis elegans] Length = 199 Score = 221 bits (563), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 97/142 (68%), Positives = 123/142 (86%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 + + +D ++ A+ GS+ +TFGLACCAVEMM + PRYD++R+G RASPRQ+D++ Sbjct: 48 YALARLDDVLNLAQRGSIWPLTFGLACCAVEMMHFAAPRYDMDRYGVVFRASPRQADLIF 107 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGT+TNKMA ALRR+YDQMPE ++VISMGSCANGGGYYHY+YSV+RGCDR++PVDIYVP Sbjct: 108 VAGTVTNKMAPALRRIYDQMPEAKWVISMGSCANGGGYYHYAYSVLRGCDRVIPVDIYVP 167 Query: 158 GCPPTAEALIYGILLLQKKIRR 179 GCPPTAEAL+YG+L LQKKI+R Sbjct: 168 GCPPTAEALLYGVLQLQKKIKR 189 >gi|302833603|ref|XP_002948365.1| NADH:ubiquinone oxidoreductase subunit 10 [Volvox carteri f. nagariensis] gi|300266585|gb|EFJ50772.1| NADH:ubiquinone oxidoreductase subunit 10 [Volvox carteri f. nagariensis] Length = 164 Score = 221 bits (563), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 108/142 (76%), Positives = 123/142 (86%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 F+V+ VD ++ WAR GS+ MTFGLACCAVEMM A RYDL+RFG R SPRQSD MI Sbjct: 13 FVVSKVDNVINWARAGSIWPMTFGLACCAVEMMHAGASRYDLDRFGIIFRPSPRQSDCMI 72 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGTLTNKMA ALR+VYDQMPEP++V+SMGSCANGGGYYHYSY+VVRGCDR+VPVD+YVP Sbjct: 73 VAGTLTNKMAPALRKVYDQMPEPKWVVSMGSCANGGGYYHYSYAVVRGCDRVVPVDVYVP 132 Query: 158 GCPPTAEALIYGILLLQKKIRR 179 GCPPTAE L+YG+L LQKKI R Sbjct: 133 GCPPTAEGLLYGLLQLQKKIYR 154 >gi|268566427|ref|XP_002639719.1| Hypothetical protein CBG12445 [Caenorhabditis briggsae] gi|300681044|sp|A8XFG2|NDUS7_CAEBR RecName: Full=Probable NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial; Flags: Precursor gi|187029568|emb|CAP31423.1| CBR-NDUF-7 protein [Caenorhabditis briggsae AF16] Length = 199 Score = 221 bits (562), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 97/142 (68%), Positives = 123/142 (86%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 + + +D ++ A+ GS+ +TFGLACCAVEMM + PRYD++R+G RASPRQ+D++ Sbjct: 48 YALARLDDVMNLAQRGSIWPLTFGLACCAVEMMHFAAPRYDMDRYGVVFRASPRQADLIF 107 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGT+TNKMA ALRR+YDQMPE ++VISMGSCANGGGYYHY+YSV+RGCDR++PVDIYVP Sbjct: 108 VAGTVTNKMAPALRRIYDQMPEAKWVISMGSCANGGGYYHYAYSVLRGCDRVIPVDIYVP 167 Query: 158 GCPPTAEALIYGILLLQKKIRR 179 GCPPTAEAL+YG+L LQKKI+R Sbjct: 168 GCPPTAEALLYGVLQLQKKIKR 189 >gi|159485096|ref|XP_001700585.1| NADH:ubiquinone oxidoreductase subunit 10 [Chlamydomonas reinhardtii] gi|34328788|gb|AAQ63698.1| NADH:ubiquinone oxidoreductase subunit 10 [Chlamydomonas reinhardtii] gi|158272225|gb|EDO98029.1| NADH:ubiquinone oxidoreductase subunit 10 [Chlamydomonas reinhardtii] Length = 164 Score = 221 bits (562), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 108/142 (76%), Positives = 123/142 (86%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 F+V+ VD +V WAR GS+ MTFGLACCAVEMM A RYDL+R+G R SPRQSD MI Sbjct: 13 FVVSKVDNVVNWARAGSIWPMTFGLACCAVEMMHAGASRYDLDRYGIIFRPSPRQSDAMI 72 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGTLTNKMA ALR+VYDQMPEP++V+SMGSCANGGGYYHYSY+VVRGCDR+VPVD+YVP Sbjct: 73 VAGTLTNKMAPALRKVYDQMPEPKWVVSMGSCANGGGYYHYSYAVVRGCDRVVPVDVYVP 132 Query: 158 GCPPTAEALIYGILLLQKKIRR 179 GCPPTAE L+YG+L LQKKI R Sbjct: 133 GCPPTAEGLLYGLLQLQKKIYR 154 >gi|308500063|ref|XP_003112217.1| CRE-NDUF-7 protein [Caenorhabditis remanei] gi|308268698|gb|EFP12651.1| CRE-NDUF-7 protein [Caenorhabditis remanei] Length = 199 Score = 221 bits (562), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 97/142 (68%), Positives = 123/142 (86%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 + + +D ++ A+ GS+ +TFGLACCAVEMM + PRYD++R+G RASPRQ+D++ Sbjct: 48 YALARLDDVMNLAQRGSIWPLTFGLACCAVEMMHFAAPRYDMDRYGVVFRASPRQADLIF 107 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGT+TNKMA ALRR+YDQMPE ++VISMGSCANGGGYYHY+YSV+RGCDR++PVDIYVP Sbjct: 108 VAGTVTNKMAPALRRIYDQMPEAKWVISMGSCANGGGYYHYAYSVLRGCDRVIPVDIYVP 167 Query: 158 GCPPTAEALIYGILLLQKKIRR 179 GCPPTAEAL+YG+L LQKKI+R Sbjct: 168 GCPPTAEALLYGVLQLQKKIKR 189 >gi|114053179|ref|NP_001040530.1| NADH-ubiquinone oxidoreductase 20 kDa subunit precursor [Bombyx mori] gi|95102896|gb|ABF51389.1| NADH-ubiquinone oxidoreductase 20 kDa subunit precursor [Bombyx mori] Length = 235 Score = 220 bits (561), Expect = 7e-56, Method: Compositional matrix adjust. Identities = 98/143 (68%), Positives = 120/143 (83%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 ++V D ++ W R S+ +TFGLACCA+EMM + PRYD++R G R +PRQ+DV+I Sbjct: 84 WVVARADDILNWGRRNSVWPLTFGLACCALEMMHYAGPRYDMDRLGMVFRGTPRQTDVII 143 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGT+TNKMA ALR+ YD MPEPR+V+SMGSCANGGGYYHY+YS VRGCDRIVPVDIYVP Sbjct: 144 VAGTVTNKMAPALRKTYDLMPEPRWVVSMGSCANGGGYYHYTYSTVRGCDRIVPVDIYVP 203 Query: 158 GCPPTAEALIYGILLLQKKIRRV 180 GCPPTAEAL+YG+L LQKKI+R+ Sbjct: 204 GCPPTAEALLYGMLQLQKKIKRM 226 >gi|145612789|ref|XP_360493.2| hypothetical protein MGG_10805 [Magnaporthe oryzae 70-15] gi|145019908|gb|EDK04136.1| hypothetical protein MGG_10805 [Magnaporthe oryzae 70-15] Length = 147 Score = 220 bits (560), Expect = 7e-56, Method: Compositional matrix adjust. Identities = 100/137 (72%), Positives = 120/137 (87%) Query: 43 VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL 102 +D+L+ WAR GS+ +TF LACC +EMM SMPRYD +R G RASPRQ+DVMIVAGT+ Sbjct: 1 MDRLLAWARNGSMWPLTFALACCGIEMMHLSMPRYDQDRLGIIFRASPRQADVMIVAGTV 60 Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162 TNKMA A+R+ YDQMP+P++VISMG+CANGGGYYHYSYSVVRG DRI+PVDIYVPGCPPT Sbjct: 61 TNKMAPAVRQCYDQMPDPKWVISMGTCANGGGYYHYSYSVVRGVDRILPVDIYVPGCPPT 120 Query: 163 AEALIYGILLLQKKIRR 179 AEAL+YG+L LQKKI++ Sbjct: 121 AEALMYGLLQLQKKIQK 137 >gi|1019632|gb|AAA79257.1| photosystem II protein G [Paramecium aurelia] Length = 156 Score = 220 bits (560), Expect = 7e-56, Method: Compositional matrix adjust. Identities = 97/152 (63%), Positives = 124/152 (81%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 I FL S + L++WAR GS +TFGLACCA+EMM A++ RYD +RFG RA+PRQ Sbjct: 2 ILKADFLKLSANNLISWARQGSFWPLTFGLACCALEMMHATVSRYDFDRFGVIFRATPRQ 61 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 +D++IVAGT+TNKMA ALRR+YDQ +P++V+SMGSCANGGGYYHYSY+VV+GCD+I+PV Sbjct: 62 ADLIIVAGTVTNKMAPALRRLYDQTADPKWVLSMGSCANGGGYYHYSYAVVKGCDKIIPV 121 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 DI+VPGCPPTAEAL +G+L LQK + + N K Sbjct: 122 DIFVPGCPPTAEALFFGVLQLQKTLMKTINEK 153 >gi|301107946|ref|XP_002903055.1| NADH ubiquinone oxidoreductase, putative [Phytophthora infestans T30-4] gi|262098173|gb|EEY56225.1| NADH ubiquinone oxidoreductase, putative [Phytophthora infestans T30-4] Length = 155 Score = 218 bits (556), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 98/141 (69%), Positives = 121/141 (85%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 ++V+ +D L+ W++ SL ++FGLACCAVEMM + RYD ER G RASPR +DVMI Sbjct: 4 YVVSRLDDLMNWSKKSSLWPLSFGLACCAVEMMHTAGSRYDFERMGLLFRASPRCTDVMI 63 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGT+TNKMA ALRR+YDQMPEP++VISMGSCANGGGYYHYSYSVVRG +RI+PVDIYVP Sbjct: 64 VAGTVTNKMAPALRRIYDQMPEPKFVISMGSCANGGGYYHYSYSVVRGVNRILPVDIYVP 123 Query: 158 GCPPTAEALIYGILLLQKKIR 178 GCPPTAEAL++G++ LQKK++ Sbjct: 124 GCPPTAEALLFGVMQLQKKLK 144 >gi|11466261|ref|NP_049576.1| NADH dehydrogenase subunit 10 [Tetrahymena pyriformis] gi|5306137|gb|AAD41921.1|AF160864_9 NADH dehydrogenase subunit 10 [Tetrahymena pyriformis] Length = 162 Score = 218 bits (556), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 98/145 (67%), Positives = 124/145 (85%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 ++VT V+ +V+WAR GS +TFGLACCAVEMM A++ RYD +RFG RA+PRQ+D+++ Sbjct: 5 YIVTPVNAVVSWARQGSFWPLTFGLACCAVEMMHATVSRYDFDRFGVIFRATPRQADLIL 64 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGTLTNKMA LRR+Y+Q +P++V+SMGSCANGGGYYHYSYSVVRGC+RI+PVDIYVP Sbjct: 65 VAGTLTNKMAPGLRRLYEQTLDPKWVLSMGSCANGGGYYHYSYSVVRGCNRIIPVDIYVP 124 Query: 158 GCPPTAEALIYGILLLQKKIRRVGN 182 GCPPTAEAL++G+L LQK + R N Sbjct: 125 GCPPTAEALMFGVLQLQKSLYRQVN 149 >gi|114329866|ref|YP_740769.1| NADH dehydrogenase subunit 10 [Tetrahymena paravorax] gi|114150099|gb|ABI51678.1| NADH dehydrogenase subunit 10 [Tetrahymena paravorax] Length = 162 Score = 218 bits (556), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 98/145 (67%), Positives = 124/145 (85%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 ++VT V+ +V+WAR GS +TFGLACCAVEMM A++ RYD +RFG RA+PRQ+D+++ Sbjct: 5 YIVTPVNAVVSWARQGSFWPLTFGLACCAVEMMHATVSRYDFDRFGVIFRATPRQADLIL 64 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGTLTNKMA LRR+Y+Q +P++V+SMGSCANGGGYYHYSYSVVRGC+RI+PVDIYVP Sbjct: 65 VAGTLTNKMAPGLRRLYEQTLDPKWVLSMGSCANGGGYYHYSYSVVRGCNRIIPVDIYVP 124 Query: 158 GCPPTAEALIYGILLLQKKIRRVGN 182 GCPPTAEAL++G+L LQK + R N Sbjct: 125 GCPPTAEALMFGVLQLQKSLYRQIN 149 >gi|290988400|ref|XP_002676909.1| predicted protein [Naegleria gruberi] gi|284090514|gb|EFC44165.1| predicted protein [Naegleria gruberi] Length = 186 Score = 218 bits (555), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 98/142 (69%), Positives = 116/142 (81%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 +L V L WAR S+ +TFGLACCAVEMM + RYDLER+G R +PRQSD MI Sbjct: 7 YLKAPVHDLFAWARISSMWPVTFGLACCAVEMMHVAAARYDLERYGIFFRPTPRQSDAMI 66 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 +AGTLTNKMA ALR+V+DQM EPRY +SMGSCANGGGYYH+SY VVRG D+I+PVD+YVP Sbjct: 67 IAGTLTNKMAPALRKVWDQMAEPRYSVSMGSCANGGGYYHFSYHVVRGADQIIPVDVYVP 126 Query: 158 GCPPTAEALIYGILLLQKKIRR 179 GCPPTAEAL+YG+ +LQKKI+R Sbjct: 127 GCPPTAEALLYGVYMLQKKIKR 148 >gi|114329910|ref|YP_740813.1| NADH dehydrogenase subunit 10 [Tetrahymena pigmentosa] gi|114150143|gb|ABI51721.1| NADH dehydrogenase subunit 10 [Tetrahymena pigmentosa] Length = 162 Score = 218 bits (555), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 98/145 (67%), Positives = 124/145 (85%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 ++VT V+ +V+WAR GS +TFGLACCAVEMM A++ RYD +RFG RA+PRQ+D+++ Sbjct: 5 YIVTPVNAVVSWARQGSFWPLTFGLACCAVEMMHATVSRYDFDRFGVIFRATPRQADLIL 64 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGTLTNKMA LRR+Y+Q +P++V+SMGSCANGGGYYHYSYSVVRGC+RI+PVDIYVP Sbjct: 65 VAGTLTNKMAPGLRRLYEQTLDPKWVLSMGSCANGGGYYHYSYSVVRGCNRIIPVDIYVP 124 Query: 158 GCPPTAEALIYGILLLQKKIRRVGN 182 GCPPTAEAL++G+L LQK + R N Sbjct: 125 GCPPTAEALMFGVLQLQKSLYRQIN 149 >gi|301631485|ref|XP_002944828.1| PREDICTED: NADH-quinone oxidoreductase subunit B-like [Xenopus (Silurana) tropicalis] Length = 164 Score = 218 bits (555), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 103/136 (75%), Positives = 117/136 (86%), Gaps = 1/136 (0%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPR 91 + +GF+ TS D +V WA+TGS+ MTFGLACCAVEMM A+ RYDL RFG RASPR Sbjct: 5 VMKEGFVTTSYDAVVNWAKTGSIWPMTFGLACCAVEMMHAASARYDLARFGAEVFRASPR 64 Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151 QSD+MIVAGTL NKMA A+R+VYDQM EPR+V+SMGSCANGGGYYHYSYSVVRGCDR+VP Sbjct: 65 QSDLMIVAGTLCNKMAPAMRKVYDQMSEPRWVLSMGSCANGGGYYHYSYSVVRGCDRVVP 124 Query: 152 VDIYVPGCPPTAEALI 167 VD+YVPGCPPTAEALI Sbjct: 125 VDVYVPGCPPTAEALI 140 >gi|260076082|gb|ACX30960.1| NADH dehydrogenase subunit 10 [Euplotes minuta] Length = 167 Score = 218 bits (554), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 96/140 (68%), Positives = 122/140 (87%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 +LVT + +V W+R+GS+ +TFGLACCAVEMM ++M RYDL+RFG RASPR SD++I Sbjct: 9 WLVTKLQTMVNWSRSGSIWPLTFGLACCAVEMMHSAMSRYDLDRFGMIFRASPRHSDLII 68 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 +AGTLTNKMA LRR+++QM EP++++SMGSCANGGGYYHYSY+VVRG +RIVPVD+YVP Sbjct: 69 IAGTLTNKMAPTLRRLFEQMQEPKFILSMGSCANGGGYYHYSYAVVRGAERIVPVDMYVP 128 Query: 158 GCPPTAEALIYGILLLQKKI 177 GCPPTAEALI+G+L LQ K+ Sbjct: 129 GCPPTAEALIFGLLQLQGKV 148 >gi|15027638|ref|NP_149372.1| NADH dehydrogenase subunit 10 [Tetrahymena thermophila] gi|15011474|gb|AAK77569.1|AF396436_9 NADH dehydrogenase subunit 10 [Tetrahymena thermophila] Length = 162 Score = 218 bits (554), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 97/145 (66%), Positives = 124/145 (85%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 ++VT ++ +V+WAR GS +TFGLACCAVEMM A++ RYD +RFG RA+PRQ+D+++ Sbjct: 5 YIVTPINAVVSWARQGSFWPLTFGLACCAVEMMHATVSRYDFDRFGVIFRATPRQADLIL 64 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGTLTNKMA LRR+Y+Q +P++V+SMGSCANGGGYYHYSYSVVRGC+RI+PVDIYVP Sbjct: 65 VAGTLTNKMAPGLRRLYEQTLDPKWVLSMGSCANGGGYYHYSYSVVRGCNRIIPVDIYVP 124 Query: 158 GCPPTAEALIYGILLLQKKIRRVGN 182 GCPPTAEAL++G+L LQK + R N Sbjct: 125 GCPPTAEALMFGVLQLQKSLYRQIN 149 >gi|114329820|ref|YP_740724.1| NADH dehydrogenase subunit 10 [Tetrahymena malaccensis] gi|114150053|gb|ABI51633.1| NADH dehydrogenase subunit 10 [Tetrahymena malaccensis] Length = 162 Score = 218 bits (554), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 97/145 (66%), Positives = 124/145 (85%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 ++VT ++ +V+WAR GS +TFGLACCAVEMM A++ RYD +RFG RA+PRQ+D+++ Sbjct: 5 YIVTPINAVVSWARQGSFWPLTFGLACCAVEMMHATVSRYDFDRFGVIFRATPRQADLIL 64 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGTLTNKMA LRR+Y+Q +P++V+SMGSCANGGGYYHYSYSVVRGC+RI+PVDIYVP Sbjct: 65 VAGTLTNKMAPGLRRLYEQTLDPKWVLSMGSCANGGGYYHYSYSVVRGCNRIIPVDIYVP 124 Query: 158 GCPPTAEALIYGILLLQKKIRRVGN 182 GCPPTAEAL++G+L LQK + R N Sbjct: 125 GCPPTAEALMFGVLQLQKSLYRQIN 149 >gi|260076121|gb|ACX30998.1| NADH dehydrogenase subunit 10 [Moneuplotes crassus] Length = 163 Score = 217 bits (553), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 96/140 (68%), Positives = 121/140 (86%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 +LVT + ++ W+R GS+ +TFGLACCAVEMM ++M RYDL+RFG RASPR SD++I Sbjct: 5 WLVTKLQIMINWSRAGSIWPLTFGLACCAVEMMHSAMSRYDLDRFGTIFRASPRHSDLII 64 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 +AGTLTNKMA LRR+++QM EP++++SMGSCANGGGYYHYSY+VVRG DRIVPVD+YVP Sbjct: 65 IAGTLTNKMAPTLRRLFEQMQEPKFILSMGSCANGGGYYHYSYAVVRGADRIVPVDMYVP 124 Query: 158 GCPPTAEALIYGILLLQKKI 177 GCPPTAEALI+G+L LQ K+ Sbjct: 125 GCPPTAEALIFGLLQLQGKV 144 >gi|46134967|ref|XP_389508.1| hypothetical protein FG09332.1 [Gibberella zeae PH-1] Length = 233 Score = 216 bits (550), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 110/142 (77%), Positives = 124/142 (87%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 + +T+VD+L WARTGSL MTF LACC +EMM SMPRYD +R G RASPRQSDVMI Sbjct: 81 YALTTVDKLANWARTGSLWPMTFALACCGIEMMHVSMPRYDQDRLGIIFRASPRQSDVMI 140 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYY+YSYSVVRG DRI+PVDIYVP Sbjct: 141 VAGTLTNKMAPALRQVYDQMPEPRWVISMGSCANGGGYYYYSYSVVRGVDRIIPVDIYVP 200 Query: 158 GCPPTAEALIYGILLLQKKIRR 179 GCPPTAEAL+YG+ LQ+KIR+ Sbjct: 201 GCPPTAEALMYGVFQLQRKIRK 222 >gi|9652180|gb|AAF91429.1|AF279902_1 NADH-ubiquinone oxidoreductase subunit PSST [Lupinus luteus] Length = 210 Score = 214 bits (546), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 112/142 (78%), Positives = 122/142 (85%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 F+++ VD L+ WAR GS+ MTFGLACCAVEMM RYDL+RFG R SPRQSD MI Sbjct: 59 FVISKVDDLMNWARRGSIWPMTFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDCMI 118 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSY VVRGCDRIVPVDIYVP Sbjct: 119 VAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYYVVRGCDRIVPVDIYVP 178 Query: 158 GCPPTAEALIYGILLLQKKIRR 179 GCPPTAEAL+YG+L LQKKI R Sbjct: 179 GCPPTAEALLYGLLQLQKKINR 200 >gi|324522539|gb|ADY48077.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 7 [Ascaris suum] Length = 210 Score = 214 bits (545), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 94/142 (66%), Positives = 120/142 (84%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 + + VD ++ + SL +TFGLACCAVEMM + PRYD++R+G RASPRQ D++ Sbjct: 59 YALARVDDVINLCQRTSLWPLTFGLACCAVEMMHFAAPRYDMDRYGVVFRASPRQVDLIF 118 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 +AGT+TNKMA ALRR++DQMPE ++VISMGSCANGGGYYHY+YSV++GCDR++PVDIYVP Sbjct: 119 IAGTVTNKMAPALRRIFDQMPEAKWVISMGSCANGGGYYHYAYSVLKGCDRVIPVDIYVP 178 Query: 158 GCPPTAEALIYGILLLQKKIRR 179 GCPPTAEAL+YG+L LQKKI+R Sbjct: 179 GCPPTAEALLYGVLQLQKKIKR 200 >gi|154282161|ref|XP_001541893.1| NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial precursor [Ajellomyces capsulatus NAm1] gi|150412072|gb|EDN07460.1| NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial precursor [Ajellomyces capsulatus NAm1] Length = 242 Score = 214 bits (544), Expect = 6e-54, Method: Compositional matrix adjust. Identities = 96/140 (68%), Positives = 117/140 (83%) Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVM 96 G + S+D + WAR GSL ++ GLACC VEMM SMPRYD +R G RASPRQSD++ Sbjct: 89 GHFLGSIDAVTNWARQGSLWPVSLGLACCGVEMMAVSMPRYDQDRLGTIFRASPRQSDLL 148 Query: 97 IVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV 156 IVAGT+TNKMA ALR VYDQMP+P++VISMGSCANGGGYYHYSYSVVRG DR++PVD+++ Sbjct: 149 IVAGTVTNKMAPALRLVYDQMPDPKWVISMGSCANGGGYYHYSYSVVRGVDRLLPVDLFL 208 Query: 157 PGCPPTAEALIYGILLLQKK 176 PGCPPTAEAL+Y + +L+KK Sbjct: 209 PGCPPTAEALLYAMAVLRKK 228 >gi|158260365|dbj|BAF82360.1| unnamed protein product [Homo sapiens] Length = 206 Score = 213 bits (542), Expect = 9e-54, Method: Compositional matrix adjust. Identities = 101/131 (77%), Positives = 110/131 (83%), Gaps = 4/131 (3%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 ++V +D LV WAR SL MTFGLACCAVEMM + PRYD++RFG RASPRQSDVMI Sbjct: 62 YVVAKLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQSDVMI 121 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGTLTNKMA ALR+VYDQMPEPRYV+SMGSCANGGGYYHYSYSVVRGCDRIVPVDIY+P Sbjct: 122 VAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYIP 181 Query: 158 G----CPPTAE 164 G PPT E Sbjct: 182 GRAGTAPPTRE 192 >gi|193787188|dbj|BAG52394.1| unnamed protein product [Homo sapiens] Length = 206 Score = 213 bits (542), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 101/131 (77%), Positives = 110/131 (83%), Gaps = 4/131 (3%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 ++V +D LV WAR SL MTFGLACCAVEMM + PRYD++RFG RASPRQSDVMI Sbjct: 62 YVVAKLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQSDVMI 121 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGTLTNKMA ALR+VYDQMPEPRYV+SMGSCANGGGYYHYSYSVVRGCDRIVPVDIY+P Sbjct: 122 VAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYIP 181 Query: 158 G----CPPTAE 164 G PPT E Sbjct: 182 GRAGTAPPTRE 192 >gi|242810530|ref|XP_002485599.1| NADH-plastoquinone oxidoreductase, putative [Talaromyces stipitatus ATCC 10500] gi|218716224|gb|EED15646.1| NADH-plastoquinone oxidoreductase, putative [Talaromyces stipitatus ATCC 10500] Length = 195 Score = 212 bits (539), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 95/142 (66%), Positives = 116/142 (81%) Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVM 96 G+++TSVDQ+V WAR SL ++F LACC +EMMQ SMP+YD +R G ASPRQ+DVM Sbjct: 43 GYVLTSVDQIVNWARQNSLWALSFVLACCTIEMMQVSMPQYDQDRLGIIFSASPRQADVM 102 Query: 97 IVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV 156 +VAGT+T+KMA ALR+ YDQM EPR++I+MGSCANGGGYYHY YSVVRG DRI+PVD+Y+ Sbjct: 103 VVAGTVTSKMAPALRQCYDQMSEPRWLITMGSCANGGGYYHYIYSVVRGVDRIIPVDVYI 162 Query: 157 PGCPPTAEALIYGILLLQKKIR 178 PGC PT EA +YG LQ KIR Sbjct: 163 PGCSPTPEAFLYGTFQLQNKIR 184 >gi|131324|sp|P15602|NDUS7_PARTE RecName: Full=NADH-ubiquinone oxidoreductase 20 kDa subunit gi|578753|emb|CAA34045.1| unnamed protein product [Paramecium aurelia] Length = 156 Score = 211 bits (538), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 94/152 (61%), Positives = 121/152 (79%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 I FL S + L++WAR GS +TFGLACCA+EMM A++ RYD +RFG RA+PRQ Sbjct: 2 ILKADFLKLSANNLISWARQGSFWPLTFGLACCALEMMHATVSRYDFDRFGVIFRATPRQ 61 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 +D++IVAGT+TNKMA ALRR+YDQ +P++V+SMGSCANGGGYYHYSY+VV+GCD+I+PV Sbjct: 62 ADLIIVAGTVTNKMAPALRRLYDQTADPKWVLSMGSCANGGGYYHYSYAVVKGCDKIIPV 121 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 D+ P CPPTAEAL +G+L LQK + + N K Sbjct: 122 DMLCPRCPPTAEALFFGVLQLQKTLMKTINEK 153 >gi|21750696|dbj|BAC03820.1| unnamed protein product [Homo sapiens] Length = 213 Score = 211 bits (538), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 101/131 (77%), Positives = 110/131 (83%), Gaps = 4/131 (3%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 ++V +D LV WAR SL MTFGLACCAVEMM + PRYD++RFG RASPRQSDVMI Sbjct: 69 YVVAKLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQSDVMI 128 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGTLTNKMA ALR+VYDQMPEPRYV+SMGSCANGGGYYHYSYSVVRGCDRIVPVDIY+P Sbjct: 129 VAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYIP 188 Query: 158 G----CPPTAE 164 G PPT E Sbjct: 189 GRAGTAPPTRE 199 >gi|167945481|ref|ZP_02532555.1| NADH dehydrogenase subunit B [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 140 Score = 211 bits (537), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 102/138 (73%), Positives = 114/138 (82%), Gaps = 1/138 (0%) Query: 47 VTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKM 106 + WARTGSL MTFGLACCAVEMM A+ RYD++RFG R SPRQSDVMIVAGTL NKM Sbjct: 1 INWARTGSLWPMTFGLACCAVEMMHAAAARYDMDRFGIVFRPSPRQSDVMIVAGTLVNKM 60 Query: 107 ASA-LRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEA 165 A+ R + PEPR+VISMGSCANGGGYYHYSY+VVRGCDR+VPVDIYVPGCPPTAEA Sbjct: 61 AAWRCARSTTRWPEPRWVISMGSCANGGGYYHYSYAVVRGCDRVVPVDIYVPGCPPTAEA 120 Query: 166 LIYGILLLQKKIRRVGNV 183 L+YGI+ LQ KIRR + Sbjct: 121 LLYGIIQLQDKIRRTCTI 138 >gi|167740356|ref|ZP_02413130.1| NADH dehydrogenase subunit B [Burkholderia pseudomallei 14] gi|167817572|ref|ZP_02449252.1| NADH dehydrogenase subunit B [Burkholderia pseudomallei 91] gi|167825975|ref|ZP_02457446.1| NADH dehydrogenase subunit B [Burkholderia pseudomallei 9] gi|167896050|ref|ZP_02483452.1| NADH dehydrogenase subunit B [Burkholderia pseudomallei 7894] gi|167912696|ref|ZP_02499787.1| NADH dehydrogenase subunit B [Burkholderia pseudomallei 112] gi|167920662|ref|ZP_02507753.1| NADH dehydrogenase subunit B [Burkholderia pseudomallei BCC215] gi|226192982|ref|ZP_03788593.1| putative NADH-quinone oxidoreductase, B subunit [Burkholderia pseudomallei Pakistan 9] gi|237813963|ref|YP_002898414.1| NADH-quinone oxidoreductase subunit b (NADH dehydrogenase i subunit b) (ndh-1 subunit b) [Burkholderia pseudomallei MSHR346] gi|225934952|gb|EEH30928.1| putative NADH-quinone oxidoreductase, B subunit [Burkholderia pseudomallei Pakistan 9] gi|237506107|gb|ACQ98425.1| NADH-quinone oxidoreductase subunit b (NADH dehydrogenase i subunit b) (ndh-1 subunit b) [Burkholderia pseudomallei MSHR346] Length = 167 Score = 211 bits (537), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 106/145 (73%), Positives = 125/145 (86%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 + GF+VT++D + A+ SL +MTFGLACCAVEMM A+ RYD++RFG PRASPRQ Sbjct: 8 LEKDGFIVTTLDAAMAAAQKNSLWYMTFGLACCAVEMMHAAGARYDMDRFGMIPRASPRQ 67 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 D+MIVAGTLTNKMA A+RRVYDQM EPRYV+SMGSCANGGGYYHY YSVVRGCDRIVPV Sbjct: 68 CDLMIVAGTLTNKMAPAMRRVYDQMAEPRYVVSMGSCANGGGYYHYGYSVVRGCDRIVPV 127 Query: 153 DIYVPGCPPTAEALIYGILLLQKKI 177 D+YVPGCPPTAEAL+YG++ LQ+K+ Sbjct: 128 DVYVPGCPPTAEALVYGLMQLQRKV 152 >gi|149034568|gb|EDL89305.1| NADH dehydrogenase (ubiquinone) Fe-S protein 7, isoform CRA_a [Rattus norvegicus] Length = 210 Score = 211 bits (537), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 96/122 (78%), Positives = 106/122 (86%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 ++VT +D L+ WAR SL MTFGLACCAVEMM + PRYD++RFG RASPRQ+DVMI Sbjct: 67 YVVTKLDDLINWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQADVMI 126 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGTLTNKMA ALR+VYDQMPEPRYV+SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP Sbjct: 127 VAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 186 Query: 158 GC 159 Sbjct: 187 AA 188 >gi|8928600|ref|NP_059405.1| NADH dehydrogenase subunit 10 [Paramecium aurelia] Length = 154 Score = 211 bits (537), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 93/147 (63%), Positives = 120/147 (81%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 FL S + L++WAR GS +TFGLACCA+EMM A++ RYD +RFG RA+PRQ+D++I Sbjct: 5 FLKLSANNLISWARQGSFWPLTFGLACCALEMMHATVSRYDFDRFGVIFRATPRQADLII 64 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGT+TNKMA ALRR+YDQ +P++V+SMGSCANGGGYYHYSY+VV+GCD+I+PVD+ P Sbjct: 65 VAGTVTNKMAPALRRLYDQTADPKWVLSMGSCANGGGYYHYSYAVVKGCDKIIPVDMLCP 124 Query: 158 GCPPTAEALIYGILLLQKKIRRVGNVK 184 CPPTAEAL +G+L LQK + + N K Sbjct: 125 RCPPTAEALFFGVLQLQKTLMKTINEK 151 >gi|148699632|gb|EDL31579.1| NADH dehydrogenase (ubiquinone) Fe-S protein 7, isoform CRA_a [Mus musculus] Length = 199 Score = 211 bits (536), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 96/122 (78%), Positives = 106/122 (86%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 ++VT +D L+ WAR SL MTFGLACCAVEMM + PRYD++RFG RASPRQ+DVMI Sbjct: 73 YVVTKLDDLINWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQADVMI 132 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGTLTNKMA ALR+VYDQMPEPRYV+SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP Sbjct: 133 VAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 192 Query: 158 GC 159 Sbjct: 193 AA 194 >gi|325093407|gb|EGC46717.1| NADH-ubiquinone oxidoreductase [Ajellomyces capsulatus H88] Length = 240 Score = 210 bits (535), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 94/134 (70%), Positives = 114/134 (85%) Query: 43 VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL 102 +D + WAR GSL ++ GLACC VEMM SMPRYD +R G RASPRQSD++IVAGT+ Sbjct: 93 IDAVTNWARQGSLWPVSLGLACCGVEMMAVSMPRYDQDRLGTIFRASPRQSDLLIVAGTV 152 Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162 TNKMA ALR VYDQMP+P++VISMGSCANGGGYYHYSYSVVRG DR++PVD+++PGCPPT Sbjct: 153 TNKMAPALRLVYDQMPDPKWVISMGSCANGGGYYHYSYSVVRGVDRLLPVDLFLPGCPPT 212 Query: 163 AEALIYGILLLQKK 176 AEAL+Y + +L+KK Sbjct: 213 AEALLYAMAVLRKK 226 >gi|296232412|ref|XP_002761582.1| PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial-like [Callithrix jacchus] Length = 305 Score = 210 bits (534), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 107/176 (60%), Positives = 125/176 (71%), Gaps = 2/176 (1%) Query: 6 VNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACC 65 V+Q + + S + + + + + ++V +D L+ WAR SL MTFGLACC Sbjct: 120 VHQTVATNGPSSTQPALPKARAVVPKPSSRGEYVVAKLDDLINWARRSSLWPMTFGLACC 179 Query: 66 AVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVIS 125 AVEMM + PRYD++RFG RASPRQSDVMIVAGTLTNKMA ALRRV P P Sbjct: 180 AVEMMHMAAPRYDMDRFGVVFRASPRQSDVMIVAGTLTNKMAPALRRVGRVGPWPPLPSR 239 Query: 126 M--GSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179 SCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQ+KI+R Sbjct: 240 RLPHSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQRKIKR 295 >gi|290998039|ref|XP_002681588.1| predicted protein [Naegleria gruberi] gi|284095213|gb|EFC48844.1| predicted protein [Naegleria gruberi] Length = 174 Score = 210 bits (534), Expect = 8e-53, Method: Compositional matrix adjust. Identities = 99/142 (69%), Positives = 113/142 (79%), Gaps = 3/142 (2%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 FL + L WART SL ++FGLACCAVEMM S RYD+ER G R +PRQSD MI Sbjct: 6 FLKAPIHDLYAWARTSSLWPVSFGLACCAVEMMHTSASRYDIERMGIFYRPTPRQSDAMI 65 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 +AGTLTNKMA ALR+V+DQM EP+Y ISMGSCANGGGYYHYSY VVRG D+IVPVD+YVP Sbjct: 66 IAGTLTNKMAPALRKVWDQMSEPKYSISMGSCANGGGYYHYSYHVVRGADQIVPVDVYVP 125 Query: 158 GCPPTAEALIYGILLLQKKIRR 179 GCPPT L+YGI +LQKKI+R Sbjct: 126 GCPPT---LLYGIYMLQKKIKR 144 >gi|225563447|gb|EEH11726.1| NADH-ubiquinone oxidoreductase [Ajellomyces capsulatus G186AR] Length = 240 Score = 210 bits (534), Expect = 8e-53, Method: Compositional matrix adjust. Identities = 94/134 (70%), Positives = 114/134 (85%) Query: 43 VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL 102 +D + WAR GSL ++ GLACC VEMM SMPRYD +R G RASPRQSD++IVAGT+ Sbjct: 93 IDAVTNWARQGSLWPVSLGLACCGVEMMAVSMPRYDQDRLGTIFRASPRQSDLLIVAGTV 152 Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162 TNKMA ALR VYDQMP+P++VISMGSCANGGGYYHYSYSVVRG DR++PVD+++PGCPPT Sbjct: 153 TNKMAPALRLVYDQMPDPKWVISMGSCANGGGYYHYSYSVVRGVDRLLPVDLFLPGCPPT 212 Query: 163 AEALIYGILLLQKK 176 AEAL+Y + +L+KK Sbjct: 213 AEALLYAMAVLRKK 226 >gi|307069594|ref|YP_003878071.1| putative NADH:ubiquinone oxidoreductase, chain B [Candidatus Zinderia insecticola CARI] gi|306482854|gb|ADM89725.1| putative NADH:ubiquinone oxidoreductase, chain B [Candidatus Zinderia insecticola CARI] Length = 149 Score = 209 bits (533), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 95/146 (65%), Positives = 117/146 (80%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 I++ F S+ +L W+ + SL +TFGLACCA+EMM A R+DL++FG RASPRQ Sbjct: 2 ISNTSFATFSIKKLKKWSYSKSLWPVTFGLACCAIEMMHAGSSRFDLDQFGLFFRASPRQ 61 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 SD++I+AGTL NKMA LRR+YDQMP P++VISMGSCANGGGYYHYSYSVVRGC+ I+PV Sbjct: 62 SDLIIIAGTLCNKMAPVLRRIYDQMPIPKWVISMGSCANGGGYYHYSYSVVRGCNNIIPV 121 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIR 178 DIYVPGCPPT E L+Y I+ L+KKI Sbjct: 122 DIYVPGCPPTPETLLYSIIQLKKKIN 147 >gi|300123970|emb|CBK25241.2| unnamed protein product [Blastocystis hominis] Length = 274 Score = 209 bits (531), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 92/140 (65%), Positives = 117/140 (83%) Query: 40 VTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVA 99 VT+VD+++ + R GS+ TFGLACCA+EM+ AS R+D ER G PRA+PRQ+D+MIV+ Sbjct: 125 VTTVDKVIGYCRAGSVFPQTFGLACCAMEMIDASSARFDFERLGMIPRATPRQADLMIVS 184 Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGC 159 GT+TNKMA A+RR+YDQM EPRYVISMGSCAN GGYY YSY+VVRG DR+ PVD YVPGC Sbjct: 185 GTVTNKMAPAIRRLYDQMSEPRYVISMGSCANSGGYYAYSYNVVRGVDRLFPVDYYVPGC 244 Query: 160 PPTAEALIYGILLLQKKIRR 179 PPTA+ L+Y IL++ KK+++ Sbjct: 245 PPTADGLLYAILMVMKKLKQ 264 >gi|99034974|ref|ZP_01314777.1| hypothetical protein Wendoof_01000400 [Wolbachia endosymbiont of Drosophila willistoni TSC#14030-0811.24] Length = 161 Score = 208 bits (530), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 102/142 (71%), Positives = 115/142 (80%), Gaps = 8/142 (5%) Query: 23 DADFSRISSEITHKGFLVTS----VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78 + D+ R E GFLVT D ++ WAR+GSL MTFGLACCAVEMM + RYD Sbjct: 8 NDDWGRYKKE----GFLVTKFGDLTDYVMNWARSGSLWPMTFGLACCAVEMMHTASSRYD 63 Query: 79 LERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY 138 L+R+G RASPRQSDVMIVAGTLTNKMA+ALR+VYDQM +P+YVISMGSCANGGGYYHY Sbjct: 64 LDRYGIMFRASPRQSDVMIVAGTLTNKMAAALRKVYDQMADPKYVISMGSCANGGGYYHY 123 Query: 139 SYSVVRGCDRIVPVDIYVPGCP 160 SYSVVRGCDRIVPVD+YVPGCP Sbjct: 124 SYSVVRGCDRIVPVDVYVPGCP 145 >gi|300175569|emb|CBK20880.2| subunit NuoB (NDUFS7) [Blastocystis hominis] Length = 220 Score = 208 bits (530), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 92/140 (65%), Positives = 117/140 (83%) Query: 40 VTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVA 99 VT+VD+++ + R GS+ TFGLACCA+EM+ AS R+D ER G PRA+PRQ+D+MIV+ Sbjct: 71 VTTVDKVIGYCRAGSVFPQTFGLACCAMEMIDASSARFDFERLGMIPRATPRQADLMIVS 130 Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGC 159 GT+TNKMA A+RR+YDQM EPRYVISMGSCAN GGYY YSY+VVRG DR+ PVD YVPGC Sbjct: 131 GTVTNKMAPAIRRLYDQMSEPRYVISMGSCANSGGYYAYSYNVVRGVDRLFPVDYYVPGC 190 Query: 160 PPTAEALIYGILLLQKKIRR 179 PPTA+ L+Y IL++ KK+++ Sbjct: 191 PPTADGLLYAILMVMKKLKQ 210 >gi|221039728|dbj|BAH11627.1| unnamed protein product [Homo sapiens] Length = 182 Score = 207 bits (528), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 96/120 (80%), Positives = 105/120 (87%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 ++V +D LV WAR SL MTFGLACCAVEMM + PRYD++RFG RASPRQSDVMI Sbjct: 62 YVVAKLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQSDVMI 121 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGTLTNKMA ALR+VYDQMPEPRYV+SMGSCANGGGYYHYSYSVVRGCDRIVPVDIY+P Sbjct: 122 VAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYIP 181 >gi|239610399|gb|EEQ87386.1| NADH-ubiquinone oxidoreductase 20 kDa subunit [Ajellomyces dermatitidis ER-3] Length = 245 Score = 207 bits (528), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 93/141 (65%), Positives = 116/141 (82%) Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVM 96 G + S+D + W R SL ++ GLACC +EMM SMPRYD +R G RASPRQSD++ Sbjct: 92 GHFLGSIDAVANWGRQASLWPISLGLACCGLEMMAVSMPRYDQDRLGTIFRASPRQSDLL 151 Query: 97 IVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV 156 IVAGT+TNKMA ALR VYDQMP+P++VISMGSCANGGGYYHYSYSVVRG DR++PVD+Y+ Sbjct: 152 IVAGTVTNKMAPALRLVYDQMPDPKWVISMGSCANGGGYYHYSYSVVRGVDRLLPVDVYL 211 Query: 157 PGCPPTAEALIYGILLLQKKI 177 PGCPPTAEAL+Y I ++++K+ Sbjct: 212 PGCPPTAEALMYAISVVRRKL 232 >gi|261195670|ref|XP_002624239.1| NADH-ubiquinone oxidoreductase 20 kDa subunit [Ajellomyces dermatitidis SLH14081] gi|239588111|gb|EEQ70754.1| NADH-ubiquinone oxidoreductase 20 kDa subunit [Ajellomyces dermatitidis SLH14081] Length = 244 Score = 207 bits (528), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 93/141 (65%), Positives = 116/141 (82%) Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVM 96 G + S+D + W R SL ++ GLACC +EMM SMPRYD +R G RASPRQSD++ Sbjct: 91 GHFLGSIDAVANWGRQASLWPISLGLACCGLEMMAVSMPRYDQDRLGTIFRASPRQSDLL 150 Query: 97 IVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV 156 IVAGT+TNKMA ALR VYDQMP+P++VISMGSCANGGGYYHYSYSVVRG DR++PVD+Y+ Sbjct: 151 IVAGTVTNKMAPALRLVYDQMPDPKWVISMGSCANGGGYYHYSYSVVRGVDRLLPVDVYL 210 Query: 157 PGCPPTAEALIYGILLLQKKI 177 PGCPPTAEAL+Y I ++++K+ Sbjct: 211 PGCPPTAEALMYAISVVRRKL 231 >gi|327349174|gb|EGE78031.1| NADH-ubiquinone oxidoreductase 20 kDa subunit [Ajellomyces dermatitidis ATCC 18188] Length = 172 Score = 207 bits (527), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 93/141 (65%), Positives = 116/141 (82%) Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVM 96 G + S+D + W R SL ++ GLACC +EMM SMPRYD +R G RASPRQSD++ Sbjct: 19 GHFLGSIDAVANWGRQASLWPISLGLACCGLEMMAVSMPRYDQDRLGTIFRASPRQSDLL 78 Query: 97 IVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV 156 IVAGT+TNKMA ALR VYDQMP+P++VISMGSCANGGGYYHYSYSVVRG DR++PVD+Y+ Sbjct: 79 IVAGTVTNKMAPALRLVYDQMPDPKWVISMGSCANGGGYYHYSYSVVRGVDRLLPVDVYL 138 Query: 157 PGCPPTAEALIYGILLLQKKI 177 PGCPPTAEAL+Y I ++++K+ Sbjct: 139 PGCPPTAEALMYAISVVRRKL 159 >gi|238493105|ref|XP_002377789.1| formate hydrogenlyase, putative [Aspergillus flavus NRRL3357] gi|220696283|gb|EED52625.1| formate hydrogenlyase, putative [Aspergillus flavus NRRL3357] Length = 228 Score = 206 bits (525), Expect = 8e-52, Method: Compositional matrix adjust. Identities = 104/142 (73%), Positives = 121/142 (85%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 + +T+ DQL+ WAR GSL +TF LACC +EMM SMPRYD +R G RASPRQ+DVMI Sbjct: 77 YFLTTTDQLINWARQGSLWPLTFALACCGIEMMHVSMPRYDQDRLGIIFRASPRQADVMI 136 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGT+TNKMA ALR++YDQMP+P++VISMGSCANGGGYY+YSYSVVRG DR+VPVDIYVP Sbjct: 137 VAGTVTNKMAPALRQLYDQMPDPKWVISMGSCANGGGYYYYSYSVVRGVDRVVPVDIYVP 196 Query: 158 GCPPTAEALIYGILLLQKKIRR 179 GCPPT EAL+Y I LQKKIRR Sbjct: 197 GCPPTPEALMYAIFQLQKKIRR 218 >gi|147744666|gb|ABQ51200.1| NADH dehydrogenase (ubiquinone) Fe-S protein 7 [Capra hircus] Length = 183 Score = 206 bits (524), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 95/119 (79%), Positives = 104/119 (87%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 ++V +D L+ WAR SL MTFGLACCAVEMM + PRYD++RFG RASPRQSDVMI Sbjct: 65 YVVAKLDDLINWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQSDVMI 124 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV 156 VAGTLTNKMA ALR+VYDQMPEPRYV+SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV Sbjct: 125 VAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV 183 >gi|322801771|gb|EFZ22368.1| hypothetical protein SINV_15858 [Solenopsis invicta] Length = 189 Score = 206 bits (524), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 93/121 (76%), Positives = 105/121 (86%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 + + VD ++ W R GSL MTFGLACCAVEMM + PRYD++RFG RASPRQSDV+I Sbjct: 69 YALARVDDILNWGRKGSLWPMTFGLACCAVEMMHIAAPRYDMDRFGVVFRASPRQSDVII 128 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGTLTNKMA ALR++YDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRI+PVDIYVP Sbjct: 129 VAGTLTNKMAPALRKIYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVP 188 Query: 158 G 158 G Sbjct: 189 G 189 >gi|76811559|ref|YP_334953.1| NADH dehydrogenase subunit B [Burkholderia pseudomallei 1710b] gi|76581012|gb|ABA50487.1| NADH-quinone oxidoreductase, B subunit [Burkholderia pseudomallei 1710b] Length = 226 Score = 205 bits (521), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 104/145 (71%), Positives = 123/145 (84%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 + GF+VT++D + A+ SL +MTFGLA CAVEMM A+ RYD++RFG PRASPRQ Sbjct: 67 LEKDGFIVTTLDAAMAAAQKNSLWYMTFGLARCAVEMMHAAGARYDMDRFGMIPRASPRQ 126 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 D+MIVAGTLTNKMA A+RRVYDQM EPRYV+SMGSCANGGGYYHY YSVVRGCDRIVPV Sbjct: 127 CDLMIVAGTLTNKMAPAMRRVYDQMAEPRYVVSMGSCANGGGYYHYGYSVVRGCDRIVPV 186 Query: 153 DIYVPGCPPTAEALIYGILLLQKKI 177 D+YVPGCPPTAEAL+Y ++ LQ+K+ Sbjct: 187 DVYVPGCPPTAEALVYDLMQLQRKV 211 >gi|254259706|ref|ZP_04950760.1| putative NADH-quinone oxidoreductase, B subunit [Burkholderia pseudomallei 1710a] gi|218528075|sp|Q3JNA0|NUOB2_BURP1 RecName: Full=Putative NADH-quinone oxidoreductase subunit B 2; AltName: Full=NADH dehydrogenase I subunit B 2; AltName: Full=NDH-1 subunit B 2 gi|254218395|gb|EET07779.1| putative NADH-quinone oxidoreductase, B subunit [Burkholderia pseudomallei 1710a] Length = 167 Score = 204 bits (520), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 104/145 (71%), Positives = 123/145 (84%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 + GF+VT++D + A+ SL +MTFGLA CAVEMM A+ RYD++RFG PRASPRQ Sbjct: 8 LEKDGFIVTTLDAAMAAAQKNSLWYMTFGLARCAVEMMHAAGARYDMDRFGMIPRASPRQ 67 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 D+MIVAGTLTNKMA A+RRVYDQM EPRYV+SMGSCANGGGYYHY YSVVRGCDRIVPV Sbjct: 68 CDLMIVAGTLTNKMAPAMRRVYDQMAEPRYVVSMGSCANGGGYYHYGYSVVRGCDRIVPV 127 Query: 153 DIYVPGCPPTAEALIYGILLLQKKI 177 D+YVPGCPPTAEAL+Y ++ LQ+K+ Sbjct: 128 DVYVPGCPPTAEALVYDLMQLQRKV 152 >gi|83774873|dbj|BAE64996.1| unnamed protein product [Aspergillus oryzae] Length = 176 Score = 203 bits (517), Expect = 8e-51, Method: Compositional matrix adjust. Identities = 104/141 (73%), Positives = 121/141 (85%) Query: 39 LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIV 98 ++T+ DQL+ WAR GSL +TF LACC +EMM SMPRYD +R G RASPRQ+DVMIV Sbjct: 26 ILTTTDQLINWARQGSLWPLTFALACCGIEMMHVSMPRYDQDRLGIIFRASPRQADVMIV 85 Query: 99 AGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPG 158 AGT+TNKMA ALR++YDQMP+P++VISMGSCANGGGYY+YSYSVVRG DR+VPVDIYVPG Sbjct: 86 AGTVTNKMAPALRQLYDQMPDPKWVISMGSCANGGGYYYYSYSVVRGVDRVVPVDIYVPG 145 Query: 159 CPPTAEALIYGILLLQKKIRR 179 CPPT EAL+Y I LQKKIRR Sbjct: 146 CPPTPEALMYAIFQLQKKIRR 166 >gi|317156952|ref|XP_001826129.2| NADH dehydrogenase [ubiquinone] iron-sulfur protein 7 [Aspergillus oryzae RIB40] Length = 155 Score = 202 bits (515), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 104/139 (74%), Positives = 119/139 (85%) Query: 41 TSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAG 100 T+ DQL+ WAR GSL +TF LACC +EMM SMPRYD +R G RASPRQ+DVMIVAG Sbjct: 7 TTTDQLINWARQGSLWPLTFALACCGIEMMHVSMPRYDQDRLGIIFRASPRQADVMIVAG 66 Query: 101 TLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCP 160 T+TNKMA ALR++YDQMP+P++VISMGSCANGGGYY+YSYSVVRG DR+VPVDIYVPGCP Sbjct: 67 TVTNKMAPALRQLYDQMPDPKWVISMGSCANGGGYYYYSYSVVRGVDRVVPVDIYVPGCP 126 Query: 161 PTAEALIYGILLLQKKIRR 179 PT EAL+Y I LQKKIRR Sbjct: 127 PTPEALMYAIFQLQKKIRR 145 >gi|110636931|ref|YP_677138.1| NADH:ubiquinone oxidoreductase [Cytophaga hutchinsonii ATCC 33406] gi|110279612|gb|ABG57798.1| NADH dehydrogenase subunit B [Cytophaga hutchinsonii ATCC 33406] Length = 184 Score = 202 bits (513), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 96/154 (62%), Positives = 117/154 (75%), Gaps = 1/154 (0%) Query: 27 SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP 86 S + + G +V+ ++ ++ WAR SL M+FGLACCA+EMMQ YDL+RFG P Sbjct: 8 SLLDHKFGQGGIVVSQLEDVLNWARLSSLFPMSFGLACCAIEMMQTFTSGYDLDRFGVIP 67 Query: 87 RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCAN-GGGYYHYSYSVVRG 145 R SPRQSDVMIVAGT+T KMA +RR+Y+QMPEPRYVISMGSC+N GG Y+ + Y VV+G Sbjct: 68 RPSPRQSDVMIVAGTVTFKMADRIRRLYEQMPEPRYVISMGSCSNCGGPYWEHGYHVVKG 127 Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179 DRIVPVDIYVPGCPP EALI G L LQ+KIR+ Sbjct: 128 VDRIVPVDIYVPGCPPRPEALIGGFLKLQEKIRK 161 >gi|238065078|sp|Q11XR8|NUOB1_CYTH3 RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName: Full=NADH dehydrogenase I subunit B 1; AltName: Full=NDH-1 subunit B 1 Length = 178 Score = 201 bits (512), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 96/154 (62%), Positives = 117/154 (75%), Gaps = 1/154 (0%) Query: 27 SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP 86 S + + G +V+ ++ ++ WAR SL M+FGLACCA+EMMQ YDL+RFG P Sbjct: 2 SLLDHKFGQGGIVVSQLEDVLNWARLSSLFPMSFGLACCAIEMMQTFTSGYDLDRFGVIP 61 Query: 87 RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCAN-GGGYYHYSYSVVRG 145 R SPRQSDVMIVAGT+T KMA +RR+Y+QMPEPRYVISMGSC+N GG Y+ + Y VV+G Sbjct: 62 RPSPRQSDVMIVAGTVTFKMADRIRRLYEQMPEPRYVISMGSCSNCGGPYWEHGYHVVKG 121 Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179 DRIVPVDIYVPGCPP EALI G L LQ+KIR+ Sbjct: 122 VDRIVPVDIYVPGCPPRPEALIGGFLKLQEKIRK 155 >gi|327398400|ref|YP_004339269.1| NAD(P)H-quinone oxidoreductase subunit K [Hippea maritima DSM 10411] gi|327181029|gb|AEA33210.1| NAD(P)H-quinone oxidoreductase subunit K [Hippea maritima DSM 10411] Length = 153 Score = 201 bits (510), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 94/147 (63%), Positives = 117/147 (79%), Gaps = 1/147 (0%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 ++ T +D+LV+WAR SL MTFGLACCA+EMM R+DL+RFG RASPR SD+MI Sbjct: 7 WITTKLDKLVSWARYSSLWPMTFGLACCAIEMMATGASRFDLDRFGVVFRASPRHSDIMI 66 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 +AGTLT KMA A R+VYDQMP P++VISMGSCAN GG + +YSVV+G D I+PVD+YVP Sbjct: 67 IAGTLTKKMAIAARKVYDQMPHPKWVISMGSCANTGGMFD-TYSVVQGVDTIMPVDVYVP 125 Query: 158 GCPPTAEALIYGILLLQKKIRRVGNVK 184 GCPP E L+YGI+ LQ+KIRR G++K Sbjct: 126 GCPPRPEGLLYGIMKLQEKIRREGSMK 152 >gi|21673597|ref|NP_661662.1| NADH dehydrogenase I, 20 kDa subunit [Chlorobium tepidum TLS] gi|81791547|sp|Q8KEC2|NUOB_CHLTE RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|21646711|gb|AAM72004.1| NADH dehydrogenase I, 20 kdA subunit [Chlorobium tepidum TLS] Length = 189 Score = 199 bits (507), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 92/154 (59%), Positives = 119/154 (77%), Gaps = 1/154 (0%) Query: 29 ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88 + + I+++ LVTSVD ++ WAR SL M FGLACCA+EMM + YDLERFG PR+ Sbjct: 4 LDARISNRNVLVTSVDNVMNWARLSSLWPMGFGLACCAIEMMATNASNYDLERFGIFPRS 63 Query: 89 SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGG-YYHYSYSVVRGCD 147 SPRQSD+MIVAGT+T KMA + +Y+QMPEPRYV+SMGSC+N GG Y+H+ Y V++G D Sbjct: 64 SPRQSDLMIVAGTVTMKMAERVVTLYEQMPEPRYVLSMGSCSNSGGPYWHHGYHVLKGVD 123 Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181 RI+PVD+YVPGCPP EALI G++ +Q+ IR G Sbjct: 124 RIIPVDVYVPGCPPRPEALIGGLMKIQELIRMEG 157 >gi|254670954|emb|CBA07618.1| NADH-ubiquinone oxidoreductase, 20 kDa subunit [Neisseria meningitidis alpha153] Length = 158 Score = 199 bits (507), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 93/126 (73%), Positives = 107/126 (84%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 + KGF+ TS D ++ + RTGSL +TFGLACCAVEMM A M RYDL+RFG R SPRQ Sbjct: 6 VLKKGFITTSADTVLNYMRTGSLWPVTFGLACCAVEMMHAGMARYDLDRFGIIFRPSPRQ 65 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 +D+MIVAGTLTNKMA ALRRVYDQ+ EPR+V+SMGSCANGGGYYHYSYSVVRG DR+VPV Sbjct: 66 ADLMIVAGTLTNKMAPALRRVYDQLAEPRWVLSMGSCANGGGYYHYSYSVVRGADRVVPV 125 Query: 153 DIYVPG 158 D+YVPG Sbjct: 126 DVYVPG 131 >gi|295697744|ref|YP_003590982.1| NADH-quinone oxidoreductase, B subunit [Bacillus tusciae DSM 2912] gi|295413346|gb|ADG07838.1| NADH-quinone oxidoreductase, B subunit [Bacillus tusciae DSM 2912] Length = 183 Score = 199 bits (506), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 90/149 (60%), Positives = 118/149 (79%) Query: 30 SSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS 89 S+++T G LV++++QL WAR+ SL +TFGLACCA+EMM YDL+RFG RAS Sbjct: 25 SADLTRAGVLVSTIEQLKAWARSNSLWPLTFGLACCAIEMMGTGASHYDLDRFGIIFRAS 84 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQSDVMIVAGT+T KM LRR+YDQMP+P++V++MGSCA GG Y SY+V++G D++ Sbjct: 85 PRQSDVMIVAGTVTKKMGPLLRRLYDQMPDPKWVVAMGSCATAGGPYVRSYAVMKGVDQV 144 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIR 178 VPVD+Y+PGCPP+ ALIYG+ LQ+KIR Sbjct: 145 VPVDVYIPGCPPSPPALIYGLNKLQEKIR 173 >gi|294661316|ref|YP_003573192.1| hypothetical protein Aasi_1809 [Candidatus Amoebophilus asiaticus 5a2] gi|227336467|gb|ACP21064.1| hypothetical protein Aasi_1809 [Candidatus Amoebophilus asiaticus 5a2] Length = 173 Score = 198 bits (503), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 93/161 (57%), Positives = 121/161 (75%), Gaps = 1/161 (0%) Query: 19 LEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78 + +++ IS++ G ++ +++ L+ WA SL +TFGLACCA+EMM A YD Sbjct: 7 INQINNYMDTISNKTGEGGVIMVALEDLLNWAERSSLWPITFGLACCAIEMMGAYASHYD 66 Query: 79 LERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCAN-GGGYYH 137 L+R G PR SPRQ+DVMIV+GT+T KMA ++RR+YDQMPEPRYVISMGSCAN GG Y+ Sbjct: 67 LDRLGVIPRNSPRQADVMIVSGTVTFKMADSIRRLYDQMPEPRYVISMGSCANCGGPYWQ 126 Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 + Y VV+G DRI+PVD+YVPGCPP EALI GIL LQ+KI+ Sbjct: 127 HGYHVVKGVDRIIPVDVYVPGCPPRPEALIGGILKLQEKIK 167 >gi|56421890|ref|YP_149208.1| NADH dehydrogenase subunit B [Geobacillus kaustophilus HTA426] gi|261420760|ref|YP_003254442.1| NADH dehydrogenase subunit B [Geobacillus sp. Y412MC61] gi|297531555|ref|YP_003672830.1| NADH-quinone oxidoreductase subunit beta [Geobacillus sp. C56-T3] gi|319768430|ref|YP_004133931.1| NADH-quinone oxidoreductase, B subunit [Geobacillus sp. Y412MC52] gi|81346274|sp|Q5KUJ6|NUOB_GEOKA RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|56381732|dbj|BAD77640.1| NADH:ubiquinone oxidoreductase chain B (Fe-S oxidoreductases) [Geobacillus kaustophilus HTA426] gi|261377217|gb|ACX79960.1| NADH-quinone oxidoreductase, B subunit [Geobacillus sp. Y412MC61] gi|297254807|gb|ADI28253.1| NADH-quinone oxidoreductase, B subunit [Geobacillus sp. C56-T3] gi|317113296|gb|ADU95788.1| NADH-quinone oxidoreductase, B subunit [Geobacillus sp. Y412MC52] Length = 170 Score = 197 bits (502), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 93/153 (60%), Positives = 116/153 (75%) Query: 26 FSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA 85 FS + E + +T+++QL WAR+ SL +TFGLACCA+EMM YDL+RFG Sbjct: 8 FSGVEMEEVKRNVFLTTLEQLKGWARSSSLWPLTFGLACCAIEMMAVGGAHYDLDRFGSF 67 Query: 86 PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRG 145 RASPRQ+DVMIV+GT+T KMA LRR+YDQMPEP++VI+MGSCA GG Y SYSVV+G Sbjct: 68 FRASPRQADVMIVSGTVTKKMAPLLRRLYDQMPEPKWVIAMGSCATAGGPYVKSYSVVKG 127 Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 D+IVPVD+Y+PGCPP ALIYGI L++KIR Sbjct: 128 VDQIVPVDVYIPGCPPNPAALIYGIHKLKEKIR 160 >gi|164662629|ref|XP_001732436.1| hypothetical protein MGL_0211 [Malassezia globosa CBS 7966] gi|159106339|gb|EDP45222.1| hypothetical protein MGL_0211 [Malassezia globosa CBS 7966] Length = 120 Score = 197 bits (501), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 92/110 (83%), Positives = 101/110 (91%) Query: 70 MQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSC 129 M AS PRYD +R G RA+PRQSD+MIVAGTLTNKMA ALR+VYDQMPEPR+VISMGSC Sbjct: 1 MHASGPRYDQDRLGIVFRATPRQSDIMIVAGTLTNKMAPALRKVYDQMPEPRWVISMGSC 60 Query: 130 ANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179 ANGGGYYHYSYSVVRGCDRIVPVD+YVPGCPP+AEAL+YGIL LQ+KIRR Sbjct: 61 ANGGGYYHYSYSVVRGCDRIVPVDLYVPGCPPSAEALLYGILQLQRKIRR 110 >gi|194333676|ref|YP_002015536.1| NADH dehydrogenase subunit B [Prosthecochloris aestuarii DSM 271] gi|238065190|sp|B4S752|NUOB_PROA2 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|194311494|gb|ACF45889.1| NADH-quinone oxidoreductase, B subunit [Prosthecochloris aestuarii DSM 271] Length = 190 Score = 197 bits (501), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 91/151 (60%), Positives = 118/151 (78%), Gaps = 1/151 (0%) Query: 29 ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88 + ++I++ LVTSVD ++ WAR SL M FGLACCA+EMM + YDLERFG PR+ Sbjct: 4 LDAKISNHNVLVTSVDNVLNWARLSSLWPMGFGLACCAIEMMATNASNYDLERFGIFPRS 63 Query: 89 SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCAN-GGGYYHYSYSVVRGCD 147 SPRQSD+MIVAGT+T KMA + R+Y+QMPEPRYV+SMGSC+N GG Y+ + Y V++G D Sbjct: 64 SPRQSDLMIVAGTVTMKMAERVIRLYEQMPEPRYVLSMGSCSNCGGPYWKHGYHVLKGVD 123 Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 RI+PVD+YVPGCPP EALI G++ +Q+ IR Sbjct: 124 RIIPVDVYVPGCPPRPEALIGGLMKVQELIR 154 >gi|189500538|ref|YP_001960008.1| NADH dehydrogenase subunit B [Chlorobium phaeobacteroides BS1] gi|238055285|sp|B3EKA0|NUOB_CHLPB RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|189495979|gb|ACE04527.1| NADH-quinone oxidoreductase, B subunit [Chlorobium phaeobacteroides BS1] Length = 190 Score = 197 bits (500), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 91/151 (60%), Positives = 118/151 (78%), Gaps = 1/151 (0%) Query: 29 ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88 + ++I++ LVTSVD ++ WAR SL M FGLACCA+EMM + YDLERFG PR+ Sbjct: 4 LDAKISNHNVLVTSVDNVLNWARLSSLWPMGFGLACCAIEMMATNASNYDLERFGIFPRS 63 Query: 89 SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCAN-GGGYYHYSYSVVRGCD 147 SPRQSD+MIVAGT+T KMA + R+Y+QMPEPRYV+SMGSC+N GG Y+ + Y V++G D Sbjct: 64 SPRQSDLMIVAGTVTMKMAERVIRLYEQMPEPRYVLSMGSCSNCGGPYWKHGYHVLKGVD 123 Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 RI+PVD+YVPGCPP EALI G++ +Q+ IR Sbjct: 124 RIIPVDVYVPGCPPRPEALIGGLMKVQELIR 154 >gi|255036234|ref|YP_003086855.1| NADH-quinone oxidoreductase, B subunit [Dyadobacter fermentans DSM 18053] gi|254948990|gb|ACT93690.1| NADH-quinone oxidoreductase, B subunit [Dyadobacter fermentans DSM 18053] Length = 176 Score = 197 bits (500), Expect = 7e-49, Method: Compositional matrix adjust. Identities = 93/143 (65%), Positives = 111/143 (77%), Gaps = 1/143 (0%) Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVM 96 G ++T+ + L+ WAR SL M FGLACCA+EMM YDLERFG PR SPRQSDVM Sbjct: 11 GIILTNAEDLMNWARLSSLWPMGFGLACCAIEMMATYAANYDLERFGIMPRPSPRQSDVM 70 Query: 97 IVAGTLTNKMASALRRVYDQMPEPRYVISMGSCAN-GGGYYHYSYSVVRGCDRIVPVDIY 155 IVAGT+T KMA +RR+Y+QMPEPRYVISMGSC+N GG Y+ + Y VV+G DRI+PVD+Y Sbjct: 71 IVAGTVTFKMADRIRRLYEQMPEPRYVISMGSCSNCGGPYWEHGYHVVKGVDRIIPVDVY 130 Query: 156 VPGCPPTAEALIYGILLLQKKIR 178 VPGCPP EALI G + LQ+KIR Sbjct: 131 VPGCPPRPEALIGGFMKLQEKIR 153 >gi|226315029|ref|YP_002774925.1| NADH dehydrogenase subunit B [Brevibacillus brevis NBRC 100599] gi|259514656|sp|C0Z772|NUOB_BREBN RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|226097979|dbj|BAH46421.1| NADH-quinone oxidoreductase chain B [Brevibacillus brevis NBRC 100599] Length = 172 Score = 197 bits (500), Expect = 7e-49, Method: Compositional matrix adjust. Identities = 94/160 (58%), Positives = 120/160 (75%), Gaps = 3/160 (1%) Query: 22 VDADFSRISSEIT---HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78 ++ D + I+ E+ ++ + T+++ + W R+ SL +TFGLACCA+EMM RYD Sbjct: 1 MELDLTSIAPELQEELNRNVMFTTLETVKGWVRSNSLWPLTFGLACCAIEMMGTGGARYD 60 Query: 79 LERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY 138 L+RFG RASPRQSDVMIVAGT+T KMA LRR+YDQMPEP++VI+MGSCA GG Y Sbjct: 61 LDRFGVIFRASPRQSDVMIVAGTVTKKMAPLLRRLYDQMPEPKWVIAMGSCATAGGPYVR 120 Query: 139 SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 SYSVV+G D+IVPVD+Y+PGCPP ALIYGI LQ+KIR Sbjct: 121 SYSVVKGVDQIVPVDVYIPGCPPNPAALIYGINKLQEKIR 160 >gi|238065051|sp|B3ET80|NUOB_AMOA5 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B Length = 160 Score = 197 bits (500), Expect = 7e-49, Method: Compositional matrix adjust. Identities = 93/151 (61%), Positives = 117/151 (77%), Gaps = 1/151 (0%) Query: 29 ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88 IS++ G ++ +++ L+ WA SL +TFGLACCA+EMM A YDL+R G PR Sbjct: 4 ISNKTGEGGVIMVALEDLLNWAERSSLWPITFGLACCAIEMMGAYASHYDLDRLGVIPRN 63 Query: 89 SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCAN-GGGYYHYSYSVVRGCD 147 SPRQ+DVMIV+GT+T KMA ++RR+YDQMPEPRYVISMGSCAN GG Y+ + Y VV+G D Sbjct: 64 SPRQADVMIVSGTVTFKMADSIRRLYDQMPEPRYVISMGSCANCGGPYWQHGYHVVKGVD 123 Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 RI+PVD+YVPGCPP EALI GIL LQ+KI+ Sbjct: 124 RIIPVDVYVPGCPPRPEALIGGILKLQEKIK 154 >gi|332971775|gb|EGK10723.1| NADH-quinone oxidoreductase subunit B [Desmospora sp. 8437] Length = 175 Score = 197 bits (500), Expect = 8e-49, Method: Compositional matrix adjust. Identities = 92/144 (63%), Positives = 110/144 (76%) Query: 35 HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSD 94 + T+++ + WAR+ SL MTFGLACCA+EMM P YDL+RFG RASPRQSD Sbjct: 17 QRNVFTTTLENVKAWARSNSLWPMTFGLACCAIEMMGTGAPHYDLDRFGSFFRASPRQSD 76 Query: 95 VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154 VMIVAGT+T KM LRR+YDQMPEP++VI+MGSCA GG Y SYSVV+G D+IVPVD+ Sbjct: 77 VMIVAGTVTKKMGPLLRRLYDQMPEPKWVIAMGSCATAGGPYVKSYSVVKGVDQIVPVDV 136 Query: 155 YVPGCPPTAEALIYGILLLQKKIR 178 Y+PGCPP ALIYGI LQ+KIR Sbjct: 137 YIPGCPPNPAALIYGIHKLQEKIR 160 >gi|145219899|ref|YP_001130608.1| NADH-quinone oxidoreductase, B subunit [Prosthecochloris vibrioformis DSM 265] gi|238065192|sp|A4SF47|NUOB_PROVI RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|145206063|gb|ABP37106.1| NADH dehydrogenase subunit B [Chlorobium phaeovibrioides DSM 265] Length = 189 Score = 196 bits (498), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 90/154 (58%), Positives = 118/154 (76%), Gaps = 1/154 (0%) Query: 29 ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88 + + ++ + LVTSVD ++ WAR SL M FGLACCA+EMM + YDLERFG PR+ Sbjct: 4 LDAAVSRQNVLVTSVDSVLNWARLSSLWPMGFGLACCAIEMMATNASNYDLERFGIFPRS 63 Query: 89 SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCAN-GGGYYHYSYSVVRGCD 147 SPRQSD+MIVAGT+T KMA + R+Y+QMPEPRYV+SMGSC+N GG Y+ + Y V++G D Sbjct: 64 SPRQSDLMIVAGTVTMKMAERVVRLYEQMPEPRYVLSMGSCSNCGGPYWEHGYHVLKGVD 123 Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181 R++PVD+YVPGCPP EALI G++ +Q+ IR G Sbjct: 124 RVIPVDVYVPGCPPRPEALIGGLMKIQELIRMEG 157 >gi|78188613|ref|YP_378951.1| NADH dehydrogenase subunit B [Chlorobium chlorochromatii CaD3] gi|123580176|sp|Q3ASW7|NUOB_CHLCH RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|78170812|gb|ABB27908.1| NADH dehydrogenase subunit B [Chlorobium chlorochromatii CaD3] Length = 190 Score = 196 bits (497), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 90/151 (59%), Positives = 117/151 (77%), Gaps = 1/151 (0%) Query: 29 ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88 + + IT+ LVTSVD ++ WAR SL M FGLACCA+EMM + YDLERFG PR+ Sbjct: 4 LDAGITNHNVLVTSVDNVLNWARLSSLWPMGFGLACCAIEMMATNASNYDLERFGIFPRS 63 Query: 89 SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGG-YYHYSYSVVRGCD 147 SPRQSD+M+VAGT+T KMA + R+Y+QMPEPRYV+SMGSC+N GG Y+ + Y V++G D Sbjct: 64 SPRQSDLMLVAGTVTMKMAERVIRLYEQMPEPRYVLSMGSCSNSGGPYWEHGYHVLKGVD 123 Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 RI+PVD+YVPGCPP E+LI G++ +Q+ IR Sbjct: 124 RIIPVDVYVPGCPPRPESLIGGLMKVQELIR 154 >gi|110598466|ref|ZP_01386737.1| NADH-quinone oxidoreductase, B subunit [Chlorobium ferrooxidans DSM 13031] gi|110339916|gb|EAT58420.1| NADH-quinone oxidoreductase, B subunit [Chlorobium ferrooxidans DSM 13031] Length = 189 Score = 195 bits (496), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 90/151 (59%), Positives = 116/151 (76%), Gaps = 1/151 (0%) Query: 29 ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88 + + IT LVTSVD ++ WAR S+ M FGLACCA+EMM + YDLERFG PR+ Sbjct: 4 LDAGITKHNVLVTSVDNVLNWARLSSIWPMGFGLACCAIEMMATNASNYDLERFGIFPRS 63 Query: 89 SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCAN-GGGYYHYSYSVVRGCD 147 SPRQSD+MIVAGT+T KMA + R+Y+QMPEPRYV+SMGSC+N GG Y+ + Y V++G D Sbjct: 64 SPRQSDLMIVAGTVTMKMAERVVRLYEQMPEPRYVLSMGSCSNCGGPYWEHGYHVLKGVD 123 Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 R++PVD+YVPGCPP EALI G++ +Q+ IR Sbjct: 124 RVIPVDVYVPGCPPRPEALIGGLMKIQELIR 154 >gi|193212957|ref|YP_001998910.1| NADH dehydrogenase subunit B [Chlorobaculum parvum NCIB 8327] gi|238055284|sp|B3QP57|NUOB_CHLP8 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|193086434|gb|ACF11710.1| NADH-quinone oxidoreductase, B subunit [Chlorobaculum parvum NCIB 8327] Length = 189 Score = 195 bits (495), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 89/154 (57%), Positives = 119/154 (77%), Gaps = 1/154 (0%) Query: 29 ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88 + ++++++ LVTSVD ++ WAR SL M FGLACCA+EMM + YDLERFG PR+ Sbjct: 4 LDAKVSNRNVLVTSVDNVMNWARLSSLWPMGFGLACCAIEMMATNASNYDLERFGIFPRS 63 Query: 89 SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCAN-GGGYYHYSYSVVRGCD 147 SPRQSD+MIVAGT+T KMA + +Y+QMPEPRYV+SMGSC+N GG Y+ + Y V++G D Sbjct: 64 SPRQSDLMIVAGTVTMKMAERVVTLYEQMPEPRYVLSMGSCSNCGGPYWDHGYHVLKGVD 123 Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181 R++PVD+YVPGCPP EALI G++ +Q+ IR G Sbjct: 124 RVIPVDVYVPGCPPRPEALIGGLMKIQELIRMEG 157 >gi|295400695|ref|ZP_06810672.1| NADH-quinone oxidoreductase, B subunit [Geobacillus thermoglucosidasius C56-YS93] gi|312112611|ref|YP_003990927.1| NADH-quinone oxidoreductase subunit beta [Geobacillus sp. Y4.1MC1] gi|294977276|gb|EFG52877.1| NADH-quinone oxidoreductase, B subunit [Geobacillus thermoglucosidasius C56-YS93] gi|311217712|gb|ADP76316.1| NADH-quinone oxidoreductase, B subunit [Geobacillus sp. Y4.1MC1] Length = 170 Score = 195 bits (495), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 95/148 (64%), Positives = 114/148 (77%), Gaps = 1/148 (0%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP 90 EI FL T+++QL WAR+ SL +TFGLACCA+EMM YDL+RFG RASP Sbjct: 14 EEIKRNVFL-TTLEQLKAWARSNSLWPLTFGLACCAIEMMGVGGSHYDLDRFGSFFRASP 72 Query: 91 RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150 RQSDVMIV+GT+T KMA LRR+YDQMPEP++VI+MGSCA GG Y SYSVV+G D+IV Sbjct: 73 RQSDVMIVSGTVTKKMAPLLRRLYDQMPEPKWVIAMGSCATAGGPYVKSYSVVKGVDQIV 132 Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIR 178 PVD+Y+PGCPP ALIYGI L++KIR Sbjct: 133 PVDVYIPGCPPNPAALIYGINKLKEKIR 160 >gi|162457344|ref|YP_001619711.1| NADH dehydrogenase (ubiquinone) [Sorangium cellulosum 'So ce 56'] gi|238065042|sp|A9G9S9|NUOB2_SORC5 RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName: Full=NADH dehydrogenase I subunit B 2; AltName: Full=NDH-1 subunit B 2 gi|161167926|emb|CAN99231.1| NADH dehydrogenase (ubiquinone) [Sorangium cellulosum 'So ce 56'] Length = 182 Score = 195 bits (495), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 90/151 (59%), Positives = 116/151 (76%), Gaps = 4/151 (2%) Query: 32 EITHKGFLVTSVDQ----LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87 E G + TSVDQ L+ W R+ S+ +M FGLACCA+E+MQ PR DLERFG APR Sbjct: 19 ESDGGGVITTSVDQTVNWLLNWGRSNSVWYMLFGLACCAIELMQTGGPRGDLERFGAAPR 78 Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCD 147 SPR SD+ I+AGTLT KMA+ ++R+YDQM EPR+VISMGSC+N GG + Y+YSV +G D Sbjct: 79 PSPRSSDLFIIAGTLTYKMATRVKRLYDQMSEPRFVISMGSCSNCGGLFQYAYSVCKGVD 138 Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 +I+PVD+YVPGCPP EAL+ G+L +Q+KI+ Sbjct: 139 QIIPVDVYVPGCPPRPEALLEGLLKIQEKIK 169 >gi|138896932|ref|YP_001127385.1| NADH dehydrogenase subunit B [Geobacillus thermodenitrificans NG80-2] gi|238065154|sp|A4ITI6|NUOB_GEOTN RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|134268445|gb|ABO68640.1| NADH-quinone oxidoreductase chain B [Geobacillus thermodenitrificans NG80-2] Length = 170 Score = 194 bits (494), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 92/147 (62%), Positives = 112/147 (76%) Query: 32 EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPR 91 E + T+++QL WAR+ SL +TFGLACCA+EMM YDL+RFG RASPR Sbjct: 14 EEVKRNVFFTTLEQLKGWARSNSLWPLTFGLACCAIEMMAVGGAHYDLDRFGSFFRASPR 73 Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151 QSDVMIV+GT+T KMA LRR+YDQMPEP++VI+MGSCA GG Y SYSVV+G D+IVP Sbjct: 74 QSDVMIVSGTVTKKMAPLLRRLYDQMPEPKWVIAMGSCATAGGPYVKSYSVVKGVDQIVP 133 Query: 152 VDIYVPGCPPTAEALIYGILLLQKKIR 178 VD+Y+PGCPP ALIYGI L++KIR Sbjct: 134 VDVYIPGCPPNPAALIYGIHKLKEKIR 160 >gi|196249749|ref|ZP_03148445.1| NADH-quinone oxidoreductase, B subunit [Geobacillus sp. G11MC16] gi|196210625|gb|EDY05388.1| NADH-quinone oxidoreductase, B subunit [Geobacillus sp. G11MC16] Length = 170 Score = 194 bits (493), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 92/147 (62%), Positives = 112/147 (76%) Query: 32 EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPR 91 E + T+++QL WAR+ SL +TFGLACCA+EMM YDL+RFG RASPR Sbjct: 14 EEVKRNVFFTTLEQLKGWARSNSLWPLTFGLACCAIEMMAVGGAHYDLDRFGSFFRASPR 73 Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151 QSDVMIV+GT+T KMA LRR+YDQMPEP++VI+MGSCA GG Y SYSVV+G D+IVP Sbjct: 74 QSDVMIVSGTVTKKMAPLLRRLYDQMPEPKWVIAMGSCATAGGPYVKSYSVVKGVDQIVP 133 Query: 152 VDIYVPGCPPTAEALIYGILLLQKKIR 178 VD+Y+PGCPP ALIYGI L++KIR Sbjct: 134 VDVYIPGCPPNPAALIYGIHKLKEKIR 160 >gi|221633754|ref|YP_002522980.1| NADH dehydrogenase i subunit B [Thermomicrobium roseum DSM 5159] gi|238065220|sp|B9L170|NUOB_THERP RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|221156029|gb|ACM05156.1| nadh dehydrogenase i, b subunit [Thermomicrobium roseum DSM 5159] Length = 185 Score = 194 bits (493), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 90/157 (57%), Positives = 121/157 (77%), Gaps = 2/157 (1%) Query: 29 ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDL-ERFGFAPR 87 +S+ +H + T+ D L +WAR SL W+ FGLACCA+EM+ ++MPR+DL ERFG R Sbjct: 3 MSAAQSHPNIITTTADWLFSWARRSSLWWLQFGLACCAIEMISSAMPRFDLAERFGMLYR 62 Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCD 147 ASPRQ+D+MIVAGT+T KMA +R++YDQM +P++VISMGSCAN GG + +Y+VV+G D Sbjct: 63 ASPRQADLMIVAGTVTKKMAPVVRQLYDQMADPKWVISMGSCANVGGPFD-TYAVVQGVD 121 Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 +++PVDIYVPGCPP EAL YG+L LQ +I R +K Sbjct: 122 QVIPVDIYVPGCPPVPEALYYGVLELQNRIIRYERLK 158 >gi|239828582|ref|YP_002951206.1| NADH dehydrogenase subunit B [Geobacillus sp. WCH70] gi|259514668|sp|C5D987|NUOB_GEOSW RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|239808875|gb|ACS25940.1| NADH-quinone oxidoreductase, B subunit [Geobacillus sp. WCH70] Length = 170 Score = 194 bits (493), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 92/154 (59%), Positives = 114/154 (74%) Query: 25 DFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF 84 D +E + T+++QL WAR+ SL +TFGLACCA+EMM YDL+RFG Sbjct: 7 DVPEGDTEELKRNVFFTTLEQLKAWARSNSLWPLTFGLACCAIEMMGVGGAHYDLDRFGS 66 Query: 85 APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR 144 RASPRQSDVMIV+GT+T KMA +RR+YDQMPEP++VI+MGSCA GG Y SYSVV+ Sbjct: 67 FFRASPRQSDVMIVSGTVTKKMAPIIRRLYDQMPEPKWVIAMGSCATAGGPYVKSYSVVK 126 Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 G D+IVPVD+Y+PGCPP ALIYGI L++KIR Sbjct: 127 GVDQIVPVDVYIPGCPPNPAALIYGINKLKEKIR 160 >gi|167463142|ref|ZP_02328231.1| NADH-quinone oxidoreductase, B subunit [Paenibacillus larvae subsp. larvae BRL-230010] gi|322383097|ref|ZP_08056924.1| hypothetical protein PL1_1946 [Paenibacillus larvae subsp. larvae B-3650] gi|321152759|gb|EFX45385.1| hypothetical protein PL1_1946 [Paenibacillus larvae subsp. larvae B-3650] Length = 172 Score = 194 bits (493), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 90/158 (56%), Positives = 116/158 (73%), Gaps = 1/158 (0%) Query: 21 KVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLE 80 ++DA + E+ + T++DQ+ WAR+ SL +TFGLACCA+EMM YDL+ Sbjct: 4 RLDAVLPEVQEEL-QRNVFTTTLDQVKAWARSSSLWPLTFGLACCAIEMMGTGAAHYDLD 62 Query: 81 RFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSY 140 RFG R SPRQ+DVMIVA T+T KMA LRR+Y+QMPEP++VI+MGSCA GG Y SY Sbjct: 63 RFGVIFRTSPRQADVMIVAETVTKKMAPLLRRLYEQMPEPKWVIAMGSCATAGGPYVKSY 122 Query: 141 SVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 +VV+G D++VPVD+Y+PGCPP ALIYGI LQ+KIR Sbjct: 123 AVVKGVDQVVPVDVYIPGCPPNPAALIYGIHKLQEKIR 160 >gi|189346374|ref|YP_001942903.1| NADH dehydrogenase subunit B [Chlorobium limicola DSM 245] gi|238055283|sp|B3EI94|NUOB_CHLL2 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|189340521|gb|ACD89924.1| NADH-quinone oxidoreductase, B subunit [Chlorobium limicola DSM 245] Length = 189 Score = 193 bits (491), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 89/151 (58%), Positives = 116/151 (76%), Gaps = 1/151 (0%) Query: 29 ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88 + + IT +VTSVD ++ WAR SL M FGLACCA+EMM + YDLERFG PR+ Sbjct: 4 LDAGITKHNVVVTSVDNVLNWARLSSLWPMGFGLACCAIEMMATNASNYDLERFGIFPRS 63 Query: 89 SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCAN-GGGYYHYSYSVVRGCD 147 SPRQSD+MIVAGT+T KMA + R+Y+QMPEPRYV+SMGSC+N GG Y+ + Y V++G D Sbjct: 64 SPRQSDLMIVAGTVTMKMAERVVRLYEQMPEPRYVLSMGSCSNCGGPYWEHGYHVLKGVD 123 Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 R++PVD+YVPGCPP E+LI G++ +Q+ IR Sbjct: 124 RVIPVDVYVPGCPPRPESLIGGLMKVQELIR 154 >gi|194336921|ref|YP_002018715.1| NADH-quinone oxidoreductase, B subunit [Pelodictyon phaeoclathratiforme BU-1] gi|238065188|sp|B4SBZ2|NUOB_PELPB RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|194309398|gb|ACF44098.1| NADH-quinone oxidoreductase, B subunit [Pelodictyon phaeoclathratiforme BU-1] Length = 189 Score = 193 bits (491), Expect = 8e-48, Method: Compositional matrix adjust. Identities = 88/151 (58%), Positives = 116/151 (76%), Gaps = 1/151 (0%) Query: 29 ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88 + + IT L+TSVD ++ WAR SL M FGLACCA+EMM + YDLERFG PR+ Sbjct: 4 LDAGITQHNVLITSVDNVLNWARLSSLWPMGFGLACCAIEMMATNASNYDLERFGIFPRS 63 Query: 89 SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCAN-GGGYYHYSYSVVRGCD 147 SPRQSD+MIVAGT+T KMA + R+Y+QMPEPRYV+SMGSC+N GG Y+ + Y V++G D Sbjct: 64 SPRQSDLMIVAGTVTMKMAERVIRLYEQMPEPRYVLSMGSCSNCGGPYWEHGYHVLKGVD 123 Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 R++PVD++VPGCPP E+LI G++ +Q+ IR Sbjct: 124 RVIPVDVFVPGCPPRPESLIGGLMKVQELIR 154 >gi|307721750|ref|YP_003892890.1| NADH dehydrogenase subunit B [Sulfurimonas autotrophica DSM 16294] gi|306979843|gb|ADN09878.1| NADH dehydrogenase subunit B [Sulfurimonas autotrophica DSM 16294] Length = 169 Score = 193 bits (490), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 89/147 (60%), Positives = 115/147 (78%), Gaps = 3/147 (2%) Query: 40 VTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVA 99 +TSVD++V W R+ SL +T+GLACC +EMM + RYD +RFG RASPRQ+DVMIVA Sbjct: 18 LTSVDKIVNWGRSNSLWALTYGLACCGIEMMASGASRYDFDRFGTIFRASPRQADVMIVA 77 Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGC 159 GTLT K A ++R+YDQM EPR+VISMGSCAN GG ++ +Y+ V+GCDRI+PVD+Y+PGC Sbjct: 78 GTLTKKHAEFIKRLYDQMTEPRWVISMGSCANTGGMFN-TYATVQGCDRIIPVDLYLPGC 136 Query: 160 PPTAEALIYGILLLQKKIR--RVGNVK 184 P E L YG++LLQKKIR + GN + Sbjct: 137 APRPETLQYGVMLLQKKIRANKAGNAQ 163 >gi|119356790|ref|YP_911434.1| NADH-quinone oxidoreductase, B subunit [Chlorobium phaeobacteroides DSM 266] gi|238055286|sp|A1BF33|NUOB_CHLPD RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|119354139|gb|ABL65010.1| NADH dehydrogenase subunit B [Chlorobium phaeobacteroides DSM 266] Length = 189 Score = 193 bits (490), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 88/151 (58%), Positives = 116/151 (76%), Gaps = 1/151 (0%) Query: 29 ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88 + + IT L+TSVD ++ WAR SL M FGLACCA+EMM + YDLERFG PR+ Sbjct: 4 LDAGITKHNVLITSVDNVLNWARLSSLWPMGFGLACCAIEMMATNASNYDLERFGIFPRS 63 Query: 89 SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCAN-GGGYYHYSYSVVRGCD 147 SPRQSD+M+VAGT++ KMA + R+Y+QMPEPRYV+SMGSC+N GG Y+ + Y V++G D Sbjct: 64 SPRQSDLMLVAGTVSMKMAERVVRLYEQMPEPRYVLSMGSCSNCGGPYWEHGYHVLKGVD 123 Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 RI+PVD+YVPGCPP E+LI G++ +Q+ IR Sbjct: 124 RIIPVDVYVPGCPPRPESLIGGLMKVQELIR 154 >gi|317130743|ref|YP_004097025.1| NADH-quinone oxidoreductase subunit beta [Bacillus cellulosilyticus DSM 2522] gi|315475691|gb|ADU32294.1| NADH-quinone oxidoreductase, B subunit [Bacillus cellulosilyticus DSM 2522] Length = 175 Score = 192 bits (489), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 94/152 (61%), Positives = 114/152 (75%), Gaps = 1/152 (0%) Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87 RI +I F T V+QL W+RT SL ++FGLACCA+EMM RYD +RFG R Sbjct: 15 RILEDIKRNVFF-TKVEQLKAWSRTRSLWPLSFGLACCAIEMMGTGAARYDFDRFGVIFR 73 Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCD 147 ASPR SDVMIVAGT+T+KMA LR +YDQMPEP++VISMGSCA GG Y +YSVV G D Sbjct: 74 ASPRHSDVMIVAGTVTSKMAPVLRTLYDQMPEPKWVISMGSCATCGGPYKEAYSVVNGVD 133 Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179 ++VPVD+YVPGCPPT AL+ G+ LL++KIRR Sbjct: 134 KVVPVDVYVPGCPPTPPALLDGVDLLREKIRR 165 >gi|322819469|gb|EFZ26582.1| NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial precursor, putative [Trypanosoma cruzi] Length = 189 Score = 192 bits (489), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 84/137 (61%), Positives = 110/137 (80%) Query: 42 SVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGT 101 ++ L W T SL +TFGLACCAVEMM A RYDL+RFG PR +PRQ++++IV+GT Sbjct: 42 TLHDLTEWCLTYSLWPLTFGLACCAVEMMHAYAARYDLDRFGIVPRPTPRQAEIIIVSGT 101 Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP 161 +TNKMA LR +Y QM P++VISMGSCANGGGYYH+SY+V+RGC+R +PVD ++PGCPP Sbjct: 102 VTNKMAPLLRNIYVQMVNPKWVISMGSCANGGGYYHFSYAVLRGCERAIPVDFWIPGCPP 161 Query: 162 TAEALIYGILLLQKKIR 178 +AE+L++ + LQKKIR Sbjct: 162 SAESLVFCLHTLQKKIR 178 >gi|71410632|ref|XP_807601.1| NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial precursor [Trypanosoma cruzi strain CL gi|71652884|ref|XP_815090.1| NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial precursor [Trypanosoma cruzi strain CL gi|70871638|gb|EAN85750.1| NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial precursor, putative [Trypanosoma cruzi] gi|70880118|gb|EAN93239.1| NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial precursor, putative [Trypanosoma cruzi] Length = 202 Score = 192 bits (489), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 84/137 (61%), Positives = 110/137 (80%) Query: 42 SVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGT 101 ++ L W T SL +TFGLACCAVEMM A RYDL+RFG PR +PRQ++++IV+GT Sbjct: 55 TLHDLTEWCLTYSLWPLTFGLACCAVEMMHAYAARYDLDRFGIVPRPTPRQAEIIIVSGT 114 Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP 161 +TNKMA LR +Y QM P++VISMGSCANGGGYYH+SY+V+RGC+R +PVD ++PGCPP Sbjct: 115 VTNKMAPLLRNIYVQMVNPKWVISMGSCANGGGYYHFSYAVLRGCERAIPVDFWIPGCPP 174 Query: 162 TAEALIYGILLLQKKIR 178 +AE+L++ + LQKKIR Sbjct: 175 SAESLVFCLHTLQKKIR 191 >gi|291334203|gb|ADD93870.1| hypothetical protein [uncultured marine bacterium MedDCM-OCT-S08-C1340] Length = 118 Score = 192 bits (489), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 91/116 (78%), Positives = 99/116 (85%) Query: 69 MMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGS 128 MM A RYDL+RFG R SPRQSDVMIVAGTL NKMA ALR+VYDQM +P++VISMGS Sbjct: 1 MMHAGASRYDLDRFGMLFRPSPRQSDVMIVAGTLVNKMAPALRKVYDQMADPKWVISMGS 60 Query: 129 CANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 CANGGGYYHYSYSVVRGCDRIVPVD+YVPGCPPTAEAL+YGIL LQ KIR +K Sbjct: 61 CANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALLYGILQLQNKIRNKNRIK 116 >gi|312130053|ref|YP_003997393.1| NADH dehydrogenase subunit b [Leadbetterella byssophila DSM 17132] gi|311906599|gb|ADQ17040.1| NADH dehydrogenase subunit B [Leadbetterella byssophila DSM 17132] Length = 169 Score = 192 bits (488), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 90/162 (55%), Positives = 121/162 (74%), Gaps = 4/162 (2%) Query: 19 LEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78 LE +++++ S E ++T++D+L WAR SL M FGLACCA+EMM YD Sbjct: 2 LESLESNYWEKSGE---GEVILTNLDELTNWARANSLWPMGFGLACCAIEMMATFASSYD 58 Query: 79 LERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCAN-GGGYYH 137 LERFG PR SPRQSD+MI++GT+T KMA +RR+Y+QM EPRYVISMGSC+N GG Y+ Sbjct: 59 LERFGIFPRNSPRQSDLMIISGTVTFKMADRVRRLYEQMAEPRYVISMGSCSNCGGPYWE 118 Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179 + Y V++G D+++PVD+YVPGCPP EALI G++ LQ+KI+R Sbjct: 119 HGYHVLKGVDKVIPVDVYVPGCPPRPEALIGGLIKLQEKIKR 160 >gi|319650861|ref|ZP_08004998.1| NADH dehydrogenase subunit B [Bacillus sp. 2_A_57_CT2] gi|317397459|gb|EFV78160.1| NADH dehydrogenase subunit B [Bacillus sp. 2_A_57_CT2] Length = 177 Score = 192 bits (487), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 92/161 (57%), Positives = 116/161 (72%), Gaps = 3/161 (1%) Query: 21 KVDADFSRISSEIT---HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRY 77 ++D IS E + + +++Q+ WAR+ SL MTFGLACCA+EMM Y Sbjct: 7 EMDLKLDNISPEEMEELQRNVFMATLEQIKAWARSNSLWPMTFGLACCAIEMMGVGSSHY 66 Query: 78 DLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137 DL+RFG R SPRQSDVMIV+GT+T KMA +RR+YDQMPEP++VI+MGSCA GG Y Sbjct: 67 DLDRFGSFFRTSPRQSDVMIVSGTVTKKMAPIVRRLYDQMPEPKWVIAMGSCATAGGPYV 126 Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 SYSVV+G D+IVPVD+Y+PGCPP ALIYGI L++KIR Sbjct: 127 KSYSVVKGVDQIVPVDVYIPGCPPNPAALIYGINKLKEKIR 167 >gi|254847826|gb|ACT83735.1| NADH dehydrogenase ubiquinone Fe-S 7 protein-like protein [Piriformospora indica] Length = 120 Score = 192 bits (487), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 89/104 (85%), Positives = 97/104 (93%) Query: 76 RYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY 135 RYD +R G RASPRQSD+MIVAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGY Sbjct: 6 RYDQDRLGIVFRASPRQSDIMIVAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGY 65 Query: 136 YHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179 YHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG+L LQ+K+RR Sbjct: 66 YHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGVLQLQRKMRR 109 >gi|124006095|ref|ZP_01690931.1| NADH-ubiquinone oxidoreductase 20 kda subunit [Microscilla marina ATCC 23134] gi|123988272|gb|EAY27925.1| NADH-ubiquinone oxidoreductase 20 kda subunit [Microscilla marina ATCC 23134] Length = 174 Score = 191 bits (486), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 89/151 (58%), Positives = 111/151 (73%), Gaps = 1/151 (0%) Query: 29 ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88 + + ++T + L+ WAR SL M FGLACCA+EMM YDL+RFG PRA Sbjct: 4 LDQQFEQDNIILTKAEDLINWARLSSLWPMGFGLACCAIEMMSTFAAGYDLDRFGVFPRA 63 Query: 89 SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCAN-GGGYYHYSYSVVRGCD 147 SPRQSDVMIVAGT+T KMA ++R+Y+QM EPRYVISMGSC+N GG Y+ + Y VV+G D Sbjct: 64 SPRQSDVMIVAGTVTFKMADRIKRLYEQMAEPRYVISMGSCSNCGGPYWEHGYHVVKGVD 123 Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 RI+PVD+YVPGCPP EALI G + LQ+K+R Sbjct: 124 RIIPVDVYVPGCPPRPEALIGGFMKLQEKVR 154 >gi|212640517|ref|YP_002317037.1| NADH dehydrogenase subunit B [Anoxybacillus flavithermus WK1] gi|238065054|sp|B7GMF0|NUOB_ANOFW RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|212561997|gb|ACJ35052.1| NADH dehydrogenase subunit B [Anoxybacillus flavithermus WK1] Length = 177 Score = 191 bits (485), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 92/161 (57%), Positives = 116/161 (72%), Gaps = 3/161 (1%) Query: 21 KVDADFSRISS---EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRY 77 K+D +S E + +T+++QL WAR+ SL +TFGLACCA+EMM Y Sbjct: 7 KMDVKLLNVSDQEMEEMRRNVFLTTLEQLKAWARSNSLWPLTFGLACCAIEMMGVGSSHY 66 Query: 78 DLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137 DL+RFG R SPRQSDVMIV+GT+T KMA +RR+YDQMPEP++VI+MGSCA GG Y Sbjct: 67 DLDRFGSFFRTSPRQSDVMIVSGTVTKKMAPIVRRLYDQMPEPKWVIAMGSCATAGGPYV 126 Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 SY VV+G D+IVPVD+Y+PGCPP ALIYGI L++KIR Sbjct: 127 KSYCVVKGVDQIVPVDVYIPGCPPNPAALIYGINKLKEKIR 167 >gi|290988470|ref|XP_002676938.1| predicted protein [Naegleria gruberi] gi|284090543|gb|EFC44194.1| predicted protein [Naegleria gruberi] Length = 131 Score = 191 bits (485), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 89/125 (71%), Positives = 100/125 (80%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 FL + L WAR GS+ +TFGLACCAVEMM AS RYDLER G R +PRQ+D MI Sbjct: 6 FLKAPLHDLFAWARVGSMWPVTFGLACCAVEMMHASASRYDLERKGIFFRPTPRQADAMI 65 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 +AGTLTNKMA ALR+V+DQM EPRY ISMGSCANGGGYYH+SY VVRG D+IVPVD+YVP Sbjct: 66 IAGTLTNKMAPALRKVWDQMAEPRYSISMGSCANGGGYYHFSYHVVRGADQIVPVDVYVP 125 Query: 158 GCPPT 162 GCPP Sbjct: 126 GCPPN 130 >gi|152990038|ref|YP_001355760.1| NADH dehydrogenase subunit B [Nitratiruptor sp. SB155-2] gi|238065184|sp|A6Q1P4|NUOB_NITSB RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|151421899|dbj|BAF69403.1| NADH-quinone oxidoreductase, chain B [Nitratiruptor sp. SB155-2] Length = 169 Score = 191 bits (485), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 87/140 (62%), Positives = 111/140 (79%), Gaps = 1/140 (0%) Query: 40 VTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVA 99 +T+VD+LV W RT SL +T+GLACCA+EMM + RYD +RFG RASPRQSDVMIVA Sbjct: 18 LTTVDKLVNWGRTNSLWVLTYGLACCAIEMMASGASRYDFDRFGVIFRASPRQSDVMIVA 77 Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGC 159 GTLT K A +RR+YDQM EP++VISMGSCAN GG ++ +Y+ V+G DR++PVDIY+PGC Sbjct: 78 GTLTKKHAEFIRRLYDQMAEPKWVISMGSCANTGGMFN-TYATVQGVDRVIPVDIYLPGC 136 Query: 160 PPTAEALIYGILLLQKKIRR 179 P E L Y ++LLQKK+R+ Sbjct: 137 APRPETLQYAVMLLQKKLRK 156 >gi|193216261|ref|YP_001997460.1| NADH dehydrogenase subunit B [Chloroherpeton thalassium ATCC 35110] gi|238065031|sp|B3QY47|NUOB2_CHLT3 RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName: Full=NADH dehydrogenase I subunit B 2; AltName: Full=NDH-1 subunit B 2 gi|193089738|gb|ACF15013.1| NADH-quinone oxidoreductase, B subunit [Chloroherpeton thalassium ATCC 35110] Length = 195 Score = 191 bits (485), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 87/152 (57%), Positives = 114/152 (75%), Gaps = 1/152 (0%) Query: 29 ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88 + + G ++T+ + ++ WAR SL M FGLACCA+EMM + YDLERFG PR+ Sbjct: 4 LDQKFDKGGVVITAAENVLNWARLSSLWPMGFGLACCAIEMMATNASNYDLERFGIFPRS 63 Query: 89 SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCAN-GGGYYHYSYSVVRGCD 147 SPRQSD+MIVAGT+T KMA + R+Y+QMPEPRYV+SMGSC+N GG Y+ + Y VV+G D Sbjct: 64 SPRQSDLMIVAGTVTFKMAERVVRLYEQMPEPRYVLSMGSCSNCGGPYWEHGYHVVKGVD 123 Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179 RI+PVD+YVPGCPP EALI G++ +Q+ IR Sbjct: 124 RIIPVDVYVPGCPPRPEALIGGLMKVQELIRE 155 >gi|269836326|ref|YP_003318554.1| NADH-quinone oxidoreductase, B subunit [Sphaerobacter thermophilus DSM 20745] gi|269785589|gb|ACZ37732.1| NADH-quinone oxidoreductase, B subunit [Sphaerobacter thermophilus DSM 20745] Length = 185 Score = 191 bits (484), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 86/144 (59%), Positives = 114/144 (79%), Gaps = 2/144 (1%) Query: 35 HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDL-ERFGFAPRASPRQS 93 + L T+VD + WAR SL W+ FGLACCA+EM+ A+MPR+DL ERFG RASPRQ+ Sbjct: 9 ERNILTTTVDTVFNWARRSSLWWLQFGLACCAIEMISAAMPRFDLAERFGMLYRASPRQA 68 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD 153 D+MIVAGT+T KMA +R++YDQM +P++VISMGSCAN GG + +Y+VV+G D+++PVD Sbjct: 69 DLMIVAGTVTKKMAPVVRQLYDQMADPKWVISMGSCANVGGPFD-TYAVVQGVDQVIPVD 127 Query: 154 IYVPGCPPTAEALIYGILLLQKKI 177 +YVPGCPP EAL YG+L LQ ++ Sbjct: 128 VYVPGCPPLPEALYYGVLELQNRV 151 >gi|89095634|ref|ZP_01168528.1| NADH dehydrogenase subunit B [Bacillus sp. NRRL B-14911] gi|89089380|gb|EAR68487.1| NADH dehydrogenase subunit B [Bacillus sp. NRRL B-14911] Length = 177 Score = 191 bits (484), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 91/161 (56%), Positives = 116/161 (72%), Gaps = 3/161 (1%) Query: 21 KVDADFSRISSEITH---KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRY 77 ++D I+ E + + +++Q+ WAR+ SL MTFGLACCA+EMM Y Sbjct: 7 QMDLKLENITPEEMQELQRNVFMATLEQIKAWARSNSLWPMTFGLACCAIEMMGVGSSHY 66 Query: 78 DLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137 DL+RFG R SPRQSDVMIV+GT+T KMA +RR+YDQMPEP++VI+MGSCA GG Y Sbjct: 67 DLDRFGSFFRTSPRQSDVMIVSGTVTKKMAPIVRRLYDQMPEPKWVIAMGSCATAGGPYV 126 Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 SYSVV+G D+IVPVD+Y+PGCPP ALIYGI L++KIR Sbjct: 127 KSYSVVKGVDQIVPVDVYIPGCPPNPAALIYGINKLKEKIR 167 >gi|251799771|ref|YP_003014502.1| NADH dehydrogenase subunit B [Paenibacillus sp. JDR-2] gi|247547397|gb|ACT04416.1| NADH-quinone oxidoreductase, B subunit [Paenibacillus sp. JDR-2] Length = 172 Score = 191 bits (484), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 88/144 (61%), Positives = 109/144 (75%) Query: 35 HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSD 94 + + +++QL WAR+ SL +TFGLACCA+EMM YDL+RFG R SPRQSD Sbjct: 17 ERNVFMGTLEQLKAWARSNSLWPLTFGLACCAIEMMGTGASHYDLDRFGVMFRTSPRQSD 76 Query: 95 VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154 VMIVAGT+T KM LRR+YDQMPEP++VI+MGSCA GG Y SY+V++G D+IVPVD+ Sbjct: 77 VMIVAGTVTKKMGPLLRRLYDQMPEPKWVIAMGSCATAGGPYIKSYAVMKGVDQIVPVDV 136 Query: 155 YVPGCPPTAEALIYGILLLQKKIR 178 Y+PGCPP ALIYGI LQ+KIR Sbjct: 137 YIPGCPPNPAALIYGINKLQEKIR 160 >gi|152977486|ref|YP_001377003.1| NADH dehydrogenase subunit B [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|238065062|sp|A7GV50|NUOB_BACCN RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|152026238|gb|ABS24008.1| NADH-quinone oxidoreductase, B subunit [Bacillus cytotoxicus NVH 391-98] Length = 172 Score = 191 bits (484), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 88/144 (61%), Positives = 110/144 (76%) Query: 35 HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSD 94 + T+++Q+ WAR+ SL MTFGLACCA+EMM YDL+RFG R SPRQSD Sbjct: 17 ERNIFFTTLEQIKGWARSNSLWPMTFGLACCAIEMMGVGSSHYDLDRFGSFFRTSPRQSD 76 Query: 95 VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154 VMIV+GT+T KMA +RR+YDQMPEP++VI+MGSCA GG Y SY+VV+G D+IVPVD+ Sbjct: 77 VMIVSGTVTKKMAPIVRRLYDQMPEPKWVIAMGSCATAGGPYVNSYAVVKGVDQIVPVDV 136 Query: 155 YVPGCPPTAEALIYGILLLQKKIR 178 Y+PGCPP ALIYGI L++KIR Sbjct: 137 YIPGCPPNPAALIYGINKLKEKIR 160 >gi|49188135|ref|YP_031388.1| NADH dehydrogenase subunit B [Bacillus anthracis str. Sterne] gi|49481270|ref|YP_039290.1| NADH dehydrogenase subunit B [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52140262|ref|YP_086568.1| NADH dehydrogenase subunit B [Bacillus cereus E33L] gi|65317275|ref|ZP_00390234.1| COG0377: NADH:ubiquinone oxidoreductase 20 kD subunit and related Fe-S oxidoreductases [Bacillus anthracis str. A2012] gi|75762936|ref|ZP_00742740.1| NADH-quinone oxidoreductase chain B [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|118480339|ref|YP_897490.1| NADH dehydrogenase subunit B [Bacillus thuringiensis str. Al Hakam] gi|81394192|sp|Q6HAY6|NUOB_BACHK RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|81685364|sp|Q630U9|NUOB_BACCZ RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|238065057|sp|A0RL90|NUOB_BACAH RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|49182062|gb|AAT57438.1| NADH dehydrogenase I, B subunit [Bacillus anthracis str. Sterne] gi|49332826|gb|AAT63472.1| NADH dehydrogenase I, subunit B (NADH-quinone oxidoreductase, chain B) [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51973731|gb|AAU15281.1| NADH dehydrogenase I, subunit B (NADH-quinone oxidoreductase, chain B) [Bacillus cereus E33L] gi|74489578|gb|EAO52990.1| NADH-quinone oxidoreductase chain B [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|118419564|gb|ABK87983.1| NADH dehydrogenase subunit B [Bacillus thuringiensis str. Al Hakam] Length = 179 Score = 190 bits (483), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 88/144 (61%), Positives = 110/144 (76%) Query: 35 HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSD 94 + ++++QL WAR+ SL MTFGLACCA+EMM YDL+RFG R SPRQSD Sbjct: 24 ERNIFFSTLEQLKGWARSNSLWPMTFGLACCAIEMMGVGSSHYDLDRFGSFFRTSPRQSD 83 Query: 95 VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154 VMIV+GT+T KMA +RR+YDQMPEP++VI+MGSCA GG Y SY+VV+G D+IVPVD+ Sbjct: 84 VMIVSGTVTKKMAPIVRRLYDQMPEPKWVIAMGSCATAGGPYVNSYAVVKGVDQIVPVDV 143 Query: 155 YVPGCPPTAEALIYGILLLQKKIR 178 Y+PGCPP ALIYGI L++KIR Sbjct: 144 YIPGCPPNPAALIYGINKLKEKIR 167 >gi|226489136|emb|CAX74917.1| NADH dehydrogenase (ubiquinone) Fe-S protein 7 [Schistosoma japonicum] Length = 176 Score = 190 bits (483), Expect = 7e-47, Method: Compositional matrix adjust. Identities = 84/120 (70%), Positives = 103/120 (85%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 F++T +D L WAR S+ +TFGLACCAVEMM + PRYD++R+G RASPRQ+D+MI Sbjct: 56 FVLTRLDDLANWARKNSIYPLTFGLACCAVEMMHIAGPRYDMDRYGVVFRASPRQADLMI 115 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 V+GT+TNKMA ALRR+YDQM P++VISMGSCANGGGYYHYSYSV+RGCDR++PVDIYVP Sbjct: 116 VSGTVTNKMAPALRRIYDQMTHPKWVISMGSCANGGGYYHYSYSVLRGCDRVIPVDIYVP 175 >gi|30023332|ref|NP_834963.1| NADH dehydrogenase subunit B [Bacillus cereus ATCC 14579] gi|30265322|ref|NP_847699.1| NADH dehydrogenase subunit B [Bacillus anthracis str. Ames] gi|42784469|ref|NP_981716.1| NADH dehydrogenase subunit B [Bacillus cereus ATCC 10987] gi|47530861|ref|YP_022210.1| NADH dehydrogenase subunit B [Bacillus anthracis str. 'Ames Ancestor'] gi|165869972|ref|ZP_02214629.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus anthracis str. A0488] gi|167636380|ref|ZP_02394680.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus anthracis str. A0442] gi|167641714|ref|ZP_02399958.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus anthracis str. A0193] gi|170689329|ref|ZP_02880523.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus anthracis str. A0465] gi|170708828|ref|ZP_02899263.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus anthracis str. A0389] gi|177654059|ref|ZP_02936069.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus anthracis str. A0174] gi|190567657|ref|ZP_03020569.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus anthracis Tsiankovskii-I] gi|196036336|ref|ZP_03103734.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus cereus W] gi|196039410|ref|ZP_03106715.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus cereus NVH0597-99] gi|196045583|ref|ZP_03112813.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus cereus 03BB108] gi|206976881|ref|ZP_03237783.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus cereus H3081.97] gi|217962788|ref|YP_002341364.1| NADH dehydrogenase subunit B [Bacillus cereus AH187] gi|218232741|ref|YP_002370074.1| NADH dehydrogenase subunit B [Bacillus cereus B4264] gi|218906476|ref|YP_002454310.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus cereus AH820] gi|222098770|ref|YP_002532828.1| NADH dehydrogenase subunit b [Bacillus cereus Q1] gi|225867276|ref|YP_002752654.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus cereus 03BB102] gi|227818062|ref|YP_002818071.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus anthracis str. CDC 684] gi|229601924|ref|YP_002869514.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus anthracis str. A0248] gi|254686278|ref|ZP_05150137.1| NADH dehydrogenase subunit B [Bacillus anthracis str. CNEVA-9066] gi|254724274|ref|ZP_05186058.1| NADH dehydrogenase subunit B [Bacillus anthracis str. A1055] gi|254735227|ref|ZP_05192936.1| NADH dehydrogenase subunit B [Bacillus anthracis str. Western North America USA6153] gi|254744431|ref|ZP_05202111.1| NADH dehydrogenase subunit B [Bacillus anthracis str. Kruger B] gi|254755735|ref|ZP_05207768.1| NADH dehydrogenase subunit B [Bacillus anthracis str. Vollum] gi|254759532|ref|ZP_05211557.1| NADH dehydrogenase subunit B [Bacillus anthracis str. Australia 94] gi|296505727|ref|YP_003667427.1| NADH dehydrogenase subunit B [Bacillus thuringiensis BMB171] gi|300117809|ref|ZP_07055576.1| NADH dehydrogenase subunit B [Bacillus cereus SJ1] gi|301056766|ref|YP_003794977.1| NADH dehydrogenase subunit beta [Bacillus anthracis CI] gi|81408415|sp|Q72XF4|NUOB_BACC1 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|81433046|sp|Q814W7|NUOB_BACCR RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|81580962|sp|Q81K01|NUOB_BACAN RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|238065058|sp|B7JGM4|NUOB_BACC0 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|238065060|sp|B7HFJ5|NUOB_BACC4 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|238065061|sp|B7HY57|NUOB_BACC7 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|238065063|sp|B9IRT1|NUOB_BACCQ RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|254767787|sp|C3P1E8|NUOB_BACAA RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|254767788|sp|C3LFH3|NUOB_BACAC RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|254767789|sp|C1F0M2|NUOB_BACC3 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|29898893|gb|AAP12164.1| NADH-quinone oxidoreductase chain B [Bacillus cereus ATCC 14579] gi|30260000|gb|AAP29185.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus anthracis str. Ames] gi|42740401|gb|AAS44324.1| NADH dehydrogenase I, B subunit [Bacillus cereus ATCC 10987] gi|47506009|gb|AAT34685.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus anthracis str. 'Ames Ancestor'] gi|164714295|gb|EDR19815.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus anthracis str. A0488] gi|167510339|gb|EDR85741.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus anthracis str. A0193] gi|167528214|gb|EDR90996.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus anthracis str. A0442] gi|170126228|gb|EDS95120.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus anthracis str. A0389] gi|170666697|gb|EDT17466.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus anthracis str. A0465] gi|172080942|gb|EDT66021.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus anthracis str. A0174] gi|190561073|gb|EDV15046.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus anthracis Tsiankovskii-I] gi|195991128|gb|EDX55098.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus cereus W] gi|196023414|gb|EDX62091.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus cereus 03BB108] gi|196029570|gb|EDX68172.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus cereus NVH0597-99] gi|206744847|gb|EDZ56252.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus cereus H3081.97] gi|217066695|gb|ACJ80945.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus cereus AH187] gi|218160698|gb|ACK60690.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus cereus B4264] gi|218535886|gb|ACK88284.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus cereus AH820] gi|221242829|gb|ACM15539.1| NADH dehydrogenase I, subunit B (NADH-quinone oxidoreductase, chain B) [Bacillus cereus Q1] gi|225791042|gb|ACO31259.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus cereus 03BB102] gi|227004083|gb|ACP13826.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus anthracis str. CDC 684] gi|229266332|gb|ACQ47969.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus anthracis str. A0248] gi|296326779|gb|ADH09707.1| NADH dehydrogenase subunit B [Bacillus thuringiensis BMB171] gi|298724673|gb|EFI65348.1| NADH dehydrogenase subunit B [Bacillus cereus SJ1] gi|300378935|gb|ADK07839.1| NADH dehydrogenase beta subunit [Bacillus cereus biovar anthracis str. CI] gi|324329247|gb|ADY24507.1| NADH dehydrogenase subunit B [Bacillus thuringiensis serovar finitimus YBT-020] gi|326943097|gb|AEA18993.1| NADH dehydrogenase subunit B [Bacillus thuringiensis serovar chinensis CT-43] Length = 172 Score = 190 bits (482), Expect = 8e-47, Method: Compositional matrix adjust. Identities = 88/144 (61%), Positives = 110/144 (76%) Query: 35 HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSD 94 + ++++QL WAR+ SL MTFGLACCA+EMM YDL+RFG R SPRQSD Sbjct: 17 ERNIFFSTLEQLKGWARSNSLWPMTFGLACCAIEMMGVGSSHYDLDRFGSFFRTSPRQSD 76 Query: 95 VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154 VMIV+GT+T KMA +RR+YDQMPEP++VI+MGSCA GG Y SY+VV+G D+IVPVD+ Sbjct: 77 VMIVSGTVTKKMAPIVRRLYDQMPEPKWVIAMGSCATAGGPYVNSYAVVKGVDQIVPVDV 136 Query: 155 YVPGCPPTAEALIYGILLLQKKIR 178 Y+PGCPP ALIYGI L++KIR Sbjct: 137 YIPGCPPNPAALIYGINKLKEKIR 160 >gi|218900425|ref|YP_002448836.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus cereus G9842] gi|238065059|sp|B7IQV2|NUOB_BACC2 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|218541670|gb|ACK94064.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus cereus G9842] Length = 172 Score = 190 bits (482), Expect = 8e-47, Method: Compositional matrix adjust. Identities = 88/144 (61%), Positives = 110/144 (76%) Query: 35 HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSD 94 + ++++QL WAR+ SL MTFGLACCA+EMM YDL+RFG R SPRQSD Sbjct: 17 ERNIFFSTLEQLKGWARSNSLWPMTFGLACCAIEMMGVGSSHYDLDRFGSFFRTSPRQSD 76 Query: 95 VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154 VMIV+GT+T KMA +RR+YDQMPEP++VI+MGSCA GG Y SY+VV+G D+IVPVD+ Sbjct: 77 VMIVSGTVTKKMAPIVRRLYDQMPEPKWVIAMGSCATAGGPYVNSYAVVKGVDQIVPVDV 136 Query: 155 YVPGCPPTAEALIYGILLLQKKIR 178 Y+PGCPP ALIYGI L++KIR Sbjct: 137 YIPGCPPNPAALIYGINKLKEKIR 160 >gi|47569794|ref|ZP_00240465.1| NADH dehydrogenase I, B subunit [Bacillus cereus G9241] gi|47553536|gb|EAL11916.1| NADH dehydrogenase I, B subunit [Bacillus cereus G9241] Length = 172 Score = 190 bits (482), Expect = 8e-47, Method: Compositional matrix adjust. Identities = 88/144 (61%), Positives = 110/144 (76%) Query: 35 HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSD 94 + ++++QL WAR+ SL MTFGLACCA+EMM YDL+RFG R SPRQSD Sbjct: 17 ERNIFFSTLEQLKGWARSNSLWPMTFGLACCAIEMMGVGSSHYDLDRFGSFFRTSPRQSD 76 Query: 95 VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154 VMIV+GT+T KMA +RR+YDQMPEP++VI+MGSCA GG Y SY+VV+G D+IVPVD+ Sbjct: 77 VMIVSGTVTKKMAPIVRRLYDQMPEPKWVIAMGSCATAGGPYINSYAVVKGVDQIVPVDV 136 Query: 155 YVPGCPPTAEALIYGILLLQKKIR 178 Y+PGCPP ALIYGI L++KIR Sbjct: 137 YIPGCPPNPAALIYGINKLKEKIR 160 >gi|284038505|ref|YP_003388435.1| NADH-quinone oxidoreductase subunit beta [Spirosoma linguale DSM 74] gi|283817798|gb|ADB39636.1| NADH-quinone oxidoreductase, B subunit [Spirosoma linguale DSM 74] Length = 176 Score = 190 bits (482), Expect = 8e-47, Method: Compositional matrix adjust. Identities = 88/136 (64%), Positives = 108/136 (79%), Gaps = 1/136 (0%) Query: 44 DQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLT 103 + L+ W+R S+ M+FGLACCA+EMMQA YDLERFG PR SPRQSD+MIV+GT+T Sbjct: 33 EDLLNWSREKSMWPMSFGLACCAIEMMQAFAASYDLERFGIFPRPSPRQSDIMIVSGTVT 92 Query: 104 NKMASALRRVYDQMPEPRYVISMGSCAN-GGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162 KMA +RR+Y+QM EPRYVISMGSC+N GG Y+ + Y VV+G DRI+PVD+YVPGCPP Sbjct: 93 FKMADRIRRLYEQMAEPRYVISMGSCSNCGGPYWQHGYHVVKGVDRIIPVDVYVPGCPPR 152 Query: 163 AEALIYGILLLQKKIR 178 EALI G + LQ+KIR Sbjct: 153 PEALIDGFIKLQEKIR 168 >gi|163942987|ref|YP_001647871.1| NADH dehydrogenase subunit B [Bacillus weihenstephanensis KBAB4] gi|238055233|sp|A9VS97|NUOB_BACWK RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|163865184|gb|ABY46243.1| NADH-quinone oxidoreductase, B subunit [Bacillus weihenstephanensis KBAB4] Length = 172 Score = 190 bits (482), Expect = 9e-47, Method: Compositional matrix adjust. Identities = 88/144 (61%), Positives = 110/144 (76%) Query: 35 HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSD 94 + ++++QL WAR+ SL MTFGLACCA+EMM YDL+RFG R SPRQSD Sbjct: 17 ERNIFFSTLEQLKGWARSNSLWPMTFGLACCAIEMMGVGSSHYDLDRFGSFFRTSPRQSD 76 Query: 95 VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154 VMIV+GT+T KMA +RR+YDQMPEP++VI+MGSCA GG Y SY+VV+G D+IVPVD+ Sbjct: 77 VMIVSGTVTKKMAPIVRRLYDQMPEPKWVIAMGSCATAGGPYVNSYAVVKGVDQIVPVDV 136 Query: 155 YVPGCPPTAEALIYGILLLQKKIR 178 Y+PGCPP ALIYGI L++KIR Sbjct: 137 YIPGCPPNPAALIYGINKLKEKIR 160 >gi|50555305|ref|XP_505061.1| YALI0F06050p [Yarrowia lipolytica] gi|49650931|emb|CAG77868.1| YALI0F06050p [Yarrowia lipolytica] Length = 216 Score = 189 bits (481), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 91/143 (63%), Positives = 106/143 (74%), Gaps = 2/143 (1%) Query: 12 SGQSSCSLEKVDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVEM 69 +G S + DF S + + + +T++D + WAR GS +TFGLACCAVEM Sbjct: 31 AGTPRVSSSSMPTDFPLPSQQKPNSAVDYTLTTLDAVANWARQGSFWPVTFGLACCAVEM 90 Query: 70 MQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSC 129 M S PRYD +R G RASPRQSD+MIVAGTLTNKMA LR+VYDQMPEPR+VISMGSC Sbjct: 91 MHVSAPRYDQDRLGIIFRASPRQSDIMIVAGTLTNKMAPVLRQVYDQMPEPRWVISMGSC 150 Query: 130 ANGGGYYHYSYSVVRGCDRIVPV 152 ANGGGYYH+SYSVVRGCDRIVPV Sbjct: 151 ANGGGYYHFSYSVVRGCDRIVPV 173 >gi|34556898|ref|NP_906713.1| NADH dehydrogenase subunit B [Wolinella succinogenes DSM 1740] gi|81653582|sp|Q7MA50|NUOB_WOLSU RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|34482613|emb|CAE09613.1| NADH DEHYDROGENASE I CHAIN B [Wolinella succinogenes] Length = 169 Score = 189 bits (481), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 86/141 (60%), Positives = 112/141 (79%), Gaps = 1/141 (0%) Query: 39 LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIV 98 ++T+VD LV W R+ SL +T+GLACCA+EMM + RYD +RFG RASPRQ+DVMIV Sbjct: 17 VLTTVDHLVNWGRSNSLWALTYGLACCAIEMMASGAGRYDFDRFGTIFRASPRQADVMIV 76 Query: 99 AGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPG 158 AGTLT K A +RR+YDQM EP++VISMGSCAN GG ++ +Y+ V+GCDRI+PVD+Y+PG Sbjct: 77 AGTLTKKHAEFIRRLYDQMSEPKWVISMGSCANTGGMFN-TYATVQGCDRIIPVDVYLPG 135 Query: 159 CPPTAEALIYGILLLQKKIRR 179 C P E L Y +++LQ+KIRR Sbjct: 136 CAPRPETLQYAVMVLQQKIRR 156 >gi|304407748|ref|ZP_07389399.1| NADH-quinone oxidoreductase, B subunit [Paenibacillus curdlanolyticus YK9] gi|304343231|gb|EFM09074.1| NADH-quinone oxidoreductase, B subunit [Paenibacillus curdlanolyticus YK9] Length = 170 Score = 189 bits (481), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 90/147 (61%), Positives = 112/147 (76%), Gaps = 1/147 (0%) Query: 32 EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPR 91 E+ FL T ++Q+ WAR+ SL +TFGLACCA+EMM YDL+RFG R SPR Sbjct: 15 ELERNVFLGT-LEQVKAWARSNSLWPLTFGLACCAIEMMGTGASHYDLDRFGVMFRTSPR 73 Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151 Q+DVMIVAGT+T KM LRR+YDQMPEP++VI+MGSCA GG Y SY+V++G D+IVP Sbjct: 74 QADVMIVAGTVTKKMGPLLRRLYDQMPEPKWVIAMGSCATAGGPYVKSYAVIKGVDQIVP 133 Query: 152 VDIYVPGCPPTAEALIYGILLLQKKIR 178 VD+Y+PGCPP+ ALIYGI LQ+KIR Sbjct: 134 VDVYIPGCPPSPAALIYGINKLQEKIR 160 >gi|78778022|ref|YP_394337.1| NADH dehydrogenase subunit B [Sulfurimonas denitrificans DSM 1251] gi|123549715|sp|Q30PH9|NUOB_SULDN RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|78498562|gb|ABB45102.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit [Sulfurimonas denitrificans DSM 1251] Length = 169 Score = 189 bits (481), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 86/139 (61%), Positives = 110/139 (79%), Gaps = 1/139 (0%) Query: 40 VTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVA 99 +TS+D++V W R+ SL MT+GLACC +EMM + RYD +RFG RASPRQSDVMIVA Sbjct: 18 LTSIDKIVNWGRSNSLWAMTYGLACCGIEMMASGASRYDFDRFGTIFRASPRQSDVMIVA 77 Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGC 159 GTLT K A ++R+YDQM EP++VISMGSCAN GG ++ +Y+ V+G DRI+PVD+Y+PGC Sbjct: 78 GTLTKKHAEFIKRLYDQMTEPKWVISMGSCANTGGMFN-TYATVQGVDRIIPVDLYLPGC 136 Query: 160 PPTAEALIYGILLLQKKIR 178 P E L YG++LLQKKIR Sbjct: 137 APRPETLQYGVMLLQKKIR 155 >gi|227536077|ref|ZP_03966126.1| NADH:ubiquinone oxidoreductase [Sphingobacterium spiritivorum ATCC 33300] gi|227243974|gb|EEI93989.1| NADH:ubiquinone oxidoreductase [Sphingobacterium spiritivorum ATCC 33300] Length = 167 Score = 189 bits (481), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 87/152 (57%), Positives = 114/152 (75%), Gaps = 1/152 (0%) Query: 29 ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88 I +++ + G +V +D L+ WAR S+ ++FG+ACCA+EMM A YDL+R G PR Sbjct: 3 IENQLQNNGVVVAKLDDLLNWARLSSMWPVSFGIACCAIEMMGAMASTYDLDRLGVFPRP 62 Query: 89 SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCAN-GGGYYHYSYSVVRGCD 147 SPRQSDVMI+AGT+T KMA +R++Y+QMPEP+YVISMGSC+N GG Y+ + Y VV+G D Sbjct: 63 SPRQSDVMIIAGTVTFKMADRIRKLYEQMPEPKYVISMGSCSNCGGPYWQHGYHVVKGVD 122 Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179 RI+PVD+YV GCPP EALI L LQKKI + Sbjct: 123 RIIPVDVYVQGCPPRPEALIGAFLELQKKIEK 154 >gi|300772047|ref|ZP_07081917.1| NADH dehydrogenase I [Sphingobacterium spiritivorum ATCC 33861] gi|300760350|gb|EFK57176.1| NADH dehydrogenase I [Sphingobacterium spiritivorum ATCC 33861] Length = 167 Score = 189 bits (480), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 87/152 (57%), Positives = 114/152 (75%), Gaps = 1/152 (0%) Query: 29 ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88 I +++ + G +V +D L+ WAR S+ ++FG+ACCA+EMM A YDL+R G PR Sbjct: 3 IENQLQNNGVVVAKLDDLLNWARLSSMWPVSFGIACCAIEMMGAMASTYDLDRLGVFPRP 62 Query: 89 SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCAN-GGGYYHYSYSVVRGCD 147 SPRQSDVMI+AGT+T KMA +R++Y+QMPEP+YVISMGSC+N GG Y+ + Y VV+G D Sbjct: 63 SPRQSDVMIIAGTVTFKMADRIRKLYEQMPEPKYVISMGSCSNCGGPYWQHGYHVVKGVD 122 Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179 RI+PVD+YV GCPP EALI L LQKKI + Sbjct: 123 RIIPVDVYVQGCPPRPEALIGAFLELQKKIEK 154 >gi|78186619|ref|YP_374662.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit [Chlorobium luteolum DSM 273] gi|123583245|sp|Q3B4W2|NUOB_PELLD RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|78166521|gb|ABB23619.1| NADH dehydrogenase subunit B [Chlorobium luteolum DSM 273] Length = 189 Score = 189 bits (480), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 91/158 (57%), Positives = 116/158 (73%), Gaps = 8/158 (5%) Query: 22 VDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLER 81 +DA FSR LV VD ++ WAR SL M FGLACCA+EMM + YDLER Sbjct: 4 LDAGFSR-------DNVLVAPVDAVLNWARLSSLWPMGFGLACCAIEMMATNASNYDLER 56 Query: 82 FGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCAN-GGGYYHYSY 140 FG PR+SPRQSD+MIVAGT++ KMA + R+Y+QMPEPRYV+SMGSC+N GG Y+ + Y Sbjct: 57 FGIFPRSSPRQSDLMIVAGTVSMKMAERVVRLYEQMPEPRYVLSMGSCSNCGGPYWEHGY 116 Query: 141 SVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 V++G DR++PVD+YVPGCPP EALI G++ +Q+ IR Sbjct: 117 HVLKGVDRVIPVDVYVPGCPPRPEALIGGLMKVQELIR 154 >gi|237752491|ref|ZP_04582971.1| NADH dehydrogenase subunit B [Helicobacter winghamensis ATCC BAA-430] gi|229375980|gb|EEO26071.1| NADH dehydrogenase subunit B [Helicobacter winghamensis ATCC BAA-430] Length = 176 Score = 189 bits (480), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 86/140 (61%), Positives = 111/140 (79%), Gaps = 1/140 (0%) Query: 40 VTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVA 99 +TSVD+L+ W R+ SL MT+GLACCA+EMM RYD +RFG RASPRQSDVMI+A Sbjct: 25 LTSVDKLLNWGRSNSLWAMTYGLACCAIEMMATGASRYDFDRFGTIFRASPRQSDVMIIA 84 Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGC 159 GT+T K A +RR+YDQMPEP++VISMGSCAN GG ++ +Y+ V+G DRI+PVDIY+PGC Sbjct: 85 GTVTKKHAQFVRRLYDQMPEPKWVISMGSCANTGGMFN-TYATVQGVDRIIPVDIYLPGC 143 Query: 160 PPTAEALIYGILLLQKKIRR 179 P E L Y +++LQ+KIR+ Sbjct: 144 SPRPETLQYALMVLQQKIRK 163 >gi|242310555|ref|ZP_04809710.1| NADH dehydrogenase I [Helicobacter pullorum MIT 98-5489] gi|239522953|gb|EEQ62819.1| NADH dehydrogenase I [Helicobacter pullorum MIT 98-5489] Length = 176 Score = 189 bits (480), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 85/140 (60%), Positives = 111/140 (79%), Gaps = 1/140 (0%) Query: 40 VTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVA 99 +TS+D+L+ W R+ SL MT+GLACCA+EMM RYD +RFG RASPRQSDVMI+A Sbjct: 25 LTSLDKLINWGRSNSLWAMTYGLACCAIEMMATGASRYDFDRFGTIFRASPRQSDVMIIA 84 Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGC 159 GT+T K A +RR+YDQMPEP++VISMGSCAN GG ++ +Y+ V+G DRI+PVDIY+PGC Sbjct: 85 GTVTKKHAQFVRRLYDQMPEPKWVISMGSCANTGGMFN-TYATVQGVDRIIPVDIYLPGC 143 Query: 160 PPTAEALIYGILLLQKKIRR 179 P E L Y +++LQ+KIR+ Sbjct: 144 SPRPETLQYALMVLQQKIRK 163 >gi|206970223|ref|ZP_03231176.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus cereus AH1134] gi|206734800|gb|EDZ51969.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus cereus AH1134] Length = 172 Score = 189 bits (479), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 87/144 (60%), Positives = 110/144 (76%) Query: 35 HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSD 94 + ++++QL WAR+ SL MTFGLACCA+EMM YDL+RFG R SPRQSD Sbjct: 17 ERNIFFSTLEQLKGWARSNSLWPMTFGLACCAIEMMGVGSSHYDLDRFGSFFRTSPRQSD 76 Query: 95 VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154 VMIV+GT+T KMA +RR+YDQMPEP++VI+MGSCA GG Y SY+VV+G D+I+PVD+ Sbjct: 77 VMIVSGTVTKKMAPIVRRLYDQMPEPKWVIAMGSCATAGGPYVNSYAVVKGVDQILPVDV 136 Query: 155 YVPGCPPTAEALIYGILLLQKKIR 178 Y+PGCPP ALIYGI L++KIR Sbjct: 137 YIPGCPPNPAALIYGINKLKEKIR 160 >gi|332296570|ref|YP_004438493.1| NAD(P)H-quinone oxidoreductase subunit K [Thermodesulfobium narugense DSM 14796] gi|332179673|gb|AEE15362.1| NAD(P)H-quinone oxidoreductase subunit K [Thermodesulfobium narugense DSM 14796] Length = 178 Score = 189 bits (479), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 86/138 (62%), Positives = 111/138 (80%), Gaps = 1/138 (0%) Query: 42 SVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGT 101 +++ +V W R SL MTFGLACCA+EMM P DL+RFG RASPRQ+D+MIVAGT Sbjct: 33 AINWVVNWGRVSSLWPMTFGLACCAIEMMAVGAPHNDLDRFGILFRASPRQADLMIVAGT 92 Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP 161 +T KMA LRRVYDQMP+PRYVISMGSCAN GG ++ +YSV++G D++VPVD+Y+PGCPP Sbjct: 93 VTLKMAPVLRRVYDQMPQPRYVISMGSCANSGGIFN-TYSVLQGVDQVVPVDVYLPGCPP 151 Query: 162 TAEALIYGILLLQKKIRR 179 EAL++ +L LQ+KI++ Sbjct: 152 RPEALLHALLYLQQKIKK 169 >gi|195953122|ref|YP_002121412.1| NADH-quinone oxidoreductase, B subunit [Hydrogenobaculum sp. Y04AAS1] gi|238065161|sp|B4U8H3|NUOB_HYDS0 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|195932734|gb|ACG57434.1| NADH-quinone oxidoreductase, B subunit [Hydrogenobaculum sp. Y04AAS1] Length = 177 Score = 189 bits (479), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 84/151 (55%), Positives = 117/151 (77%), Gaps = 1/151 (0%) Query: 29 ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88 ++S I GF+ T+VD+L++W R +L +T GLACCA+EMM A+ R+D++R G RA Sbjct: 1 MASSINGNGFITTTVDELLSWGRRNALWPVTIGLACCAIEMMHAAASRFDIDRLGMIFRA 60 Query: 89 SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 148 SPRQ+DV+IVAGT+ NK+A L+ V+DQMPEP++ ISMG CA+ GG + +YS ++G DR Sbjct: 61 SPRQADVLIVAGTVVNKVAPMLKLVWDQMPEPKWCISMGGCASAGGPFP-TYSTLQGIDR 119 Query: 149 IVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179 I+PVD+Y+PGCPPT + LIYG+L LQ+KIR Sbjct: 120 IIPVDVYIPGCPPTPQGLIYGLLELQRKIRE 150 >gi|312886635|ref|ZP_07746242.1| NADH dehydrogenase subunit B [Mucilaginibacter paludis DSM 18603] gi|311300737|gb|EFQ77799.1| NADH dehydrogenase subunit B [Mucilaginibacter paludis DSM 18603] Length = 166 Score = 188 bits (478), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 90/153 (58%), Positives = 119/153 (77%), Gaps = 3/153 (1%) Query: 29 ISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP 86 +S++IT++G +VT +D L+ W+R SL ++FG+ACCA+EMM + YDL+RFG P Sbjct: 1 MSNDITNEGGGIIVTKLDDLMNWSRLSSLWPLSFGIACCAIEMMGSMASTYDLDRFGVFP 60 Query: 87 RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCAN-GGGYYHYSYSVVRG 145 R S RQ+DV+I+AGT+T KMA ++R+Y+QMPEP+YVISMGSC+N GG Y+ + Y VV+G Sbjct: 61 RPSARQADVIIIAGTVTFKMAERIKRLYEQMPEPKYVISMGSCSNCGGPYWQHGYHVVKG 120 Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 DRI+PVDIYV GCPP EALI GIL LQKKI Sbjct: 121 VDRIIPVDIYVQGCPPRPEALIGGILELQKKIE 153 >gi|311033318|ref|ZP_07711408.1| NADH dehydrogenase subunit B [Bacillus sp. m3-13] Length = 170 Score = 188 bits (478), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 90/160 (56%), Positives = 116/160 (72%), Gaps = 3/160 (1%) Query: 22 VDADFSRISSEITH---KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78 +D + IS E + +T++++L WAR+ S+ MTFGLACCA+EMM YD Sbjct: 1 MDLNLESISPEEMEELKQTVFLTTLEELKAWARSNSMWPMTFGLACCAIEMMGVGSSHYD 60 Query: 79 LERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY 138 L+RFG R SPRQSD MIV+GT+T KMA L+R+YDQMPEP++VI+MGSCA GG Y Sbjct: 61 LDRFGSFFRTSPRQSDCMIVSGTVTKKMAPVLKRLYDQMPEPKWVIAMGSCATAGGPYIK 120 Query: 139 SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 SY+VV+G D+IVPVD+Y+PGCPP ALIYGI L++KIR Sbjct: 121 SYAVVKGVDQIVPVDVYIPGCPPNPAALIYGINKLREKIR 160 >gi|297625190|ref|YP_003706624.1| NADH-quinone oxidoreductase subunit B [Truepera radiovictrix DSM 17093] gi|297166370|gb|ADI16081.1| NADH-quinone oxidoreductase, B subunit [Truepera radiovictrix DSM 17093] Length = 178 Score = 188 bits (478), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 85/154 (55%), Positives = 119/154 (77%), Gaps = 2/154 (1%) Query: 26 FSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA 85 F + E+ ++G L +++ +LV W R+ SL TFGLACCA+EMMQ++ R+DL RFG Sbjct: 7 FEKDVQELENEGILFSTLSKLVAWGRSNSLWPATFGLACCAIEMMQSTNARHDLSRFGSE 66 Query: 86 P-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR 144 RASPRQ+DVMIVAG L+ KMA +RRVYDQMP+P++VISMG+CA+ GG ++ +Y++V+ Sbjct: 67 VFRASPRQADVMIVAGRLSKKMAPVMRRVYDQMPDPKWVISMGACASSGGMFN-NYAIVQ 125 Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 D +VPVD++VPGCPP EAL+Y ++ LQKK+R Sbjct: 126 NVDSVVPVDVFVPGCPPRPEALVYAVMQLQKKVR 159 >gi|154175216|ref|YP_001407461.1| NADH dehydrogenase subunit B [Campylobacter curvus 525.92] gi|254767791|sp|A7GW69|NUOB_CAMC5 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|112803227|gb|EAU00571.1| 50S ribosomal protein L10 [Campylobacter curvus 525.92] Length = 170 Score = 188 bits (477), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 86/141 (60%), Positives = 111/141 (78%), Gaps = 1/141 (0%) Query: 39 LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIV 98 ++T+VD+LV W R+ SL +++GLACCA+EMM + RYD +RFG RASPR S+VMI+ Sbjct: 17 VLTTVDRLVQWGRSNSLWALSYGLACCAIEMMASGASRYDFDRFGTIFRASPRHSEVMII 76 Query: 99 AGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPG 158 AGTLT K A RR+YDQMPEP++VISMGSCAN GG ++ +YS V+G DRI+PVDIY+PG Sbjct: 77 AGTLTKKHAEFTRRLYDQMPEPKWVISMGSCANTGGMFN-TYSTVQGVDRIIPVDIYLPG 135 Query: 159 CPPTAEALIYGILLLQKKIRR 179 C P E L Y +++LQKKIRR Sbjct: 136 CAPRPETLQYALMILQKKIRR 156 >gi|157164838|ref|YP_001466103.1| NADH dehydrogenase subunit B [Campylobacter concisus 13826] gi|238055276|sp|A7ZBE5|NUOB_CAMC1 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|112800518|gb|EAT97862.1| NADH-quinone oxidoreductase, b subunit [Campylobacter concisus 13826] Length = 170 Score = 188 bits (477), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 85/141 (60%), Positives = 111/141 (78%), Gaps = 1/141 (0%) Query: 39 LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIV 98 ++T+VD+LV W R+ SL +++GLACCA+EMM + RYD +RFG RASPR S+VMI+ Sbjct: 17 VLTTVDKLVQWGRSNSLWALSYGLACCAIEMMASGASRYDFDRFGTIFRASPRHSEVMII 76 Query: 99 AGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPG 158 AGTLT K A RR+YDQMPEP++VISMGSCAN GG ++ +YS V+G DRI+PVDIY+PG Sbjct: 77 AGTLTKKHAEFTRRLYDQMPEPKWVISMGSCANTGGMFN-TYSTVQGVDRIIPVDIYIPG 135 Query: 159 CPPTAEALIYGILLLQKKIRR 179 C P E L Y +++LQKKIR+ Sbjct: 136 CAPRPETLQYALMMLQKKIRK 156 >gi|71754617|ref|XP_828223.1| NADH-ubiquinone oxidoreductase 20 kDa subunit mitochondrial precursor [Trypanosoma brucei TREU927] gi|6647671|sp|Q26783|NDUS7_TRYBB RecName: Full=NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial; AltName: Full=Complex I-20kD; Short=CI-20kD; AltName: Full=NADH-ubiquinone oxidoreductase 20 kDa subunit; Flags: Precursor gi|162168|gb|AAA30217.1| NADH dehydrogenase (ubiquinone) [Trypanosoma brucei] gi|70833609|gb|EAN79111.1| NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial precursor [Trypanosoma brucei] gi|261334029|emb|CBH17023.1| NADH-ubiquinone oxidoreductase 20 kDa subunit (mitochondrial precursor), putative [Trypanosoma brucei gambiense DAL972] Length = 202 Score = 188 bits (477), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 82/137 (59%), Positives = 108/137 (78%) Query: 42 SVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGT 101 ++ L W S +TFGLACCAVEMM A RYDL+RFG PR +PRQ++++IV+GT Sbjct: 55 TLHDLTEWCLAYSPWPLTFGLACCAVEMMHAYASRYDLDRFGIVPRPTPRQAEIIIVSGT 114 Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP 161 +TNKMA LR +Y QM P++VISMGSCANGGGYYH+SY+V+RGC+R +PVD ++PGCPP Sbjct: 115 VTNKMAPILRNIYVQMVNPKWVISMGSCANGGGYYHFSYAVLRGCERAIPVDFWIPGCPP 174 Query: 162 TAEALIYGILLLQKKIR 178 +AE+L++ + LQKKIR Sbjct: 175 SAESLVFCLHTLQKKIR 191 >gi|163781785|ref|ZP_02176785.1| NADH dehydrogenase I chain B [Hydrogenivirga sp. 128-5-R1-1] gi|159883005|gb|EDP76509.1| NADH dehydrogenase I chain B [Hydrogenivirga sp. 128-5-R1-1] Length = 179 Score = 187 bits (476), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 85/154 (55%), Positives = 116/154 (75%), Gaps = 1/154 (0%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP 90 + I GF+ T+VD+L+ W R +L +T GLACCA+EMM A+ R+DL+R G RASP Sbjct: 2 ASINSNGFVTTTVDELLKWGRRNALWPVTIGLACCAIEMMHAAASRFDLDRLGVIFRASP 61 Query: 91 RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150 RQSDV+IVAGT+ NK+A L+ ++DQMP+P++ ISMG C++ GG + +YS ++G DRI+ Sbjct: 62 RQSDVLIVAGTVVNKVAPMLKLIWDQMPDPKWCISMGGCSSAGGPFP-TYSTLQGIDRII 120 Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 PVD+YVPGCPPT + LIYGIL LQ+KI+ G K Sbjct: 121 PVDVYVPGCPPTPQGLIYGILQLQRKIKEQGVTK 154 >gi|89895333|ref|YP_518820.1| NADH dehydrogenase I chain B [Desulfitobacterium hafniense Y51] gi|219669767|ref|YP_002460202.1| NADH dehydrogenase subunit B [Desulfitobacterium hafniense DCB-2] gi|122482325|sp|Q24UB6|NUOB_DESHY RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|238065122|sp|B8FRK6|NUOB_DESHD RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|89334781|dbj|BAE84376.1| NADH dehydrogenase I chain B [Desulfitobacterium hafniense Y51] gi|219540027|gb|ACL21766.1| NADH-quinone oxidoreductase, B subunit [Desulfitobacterium hafniense DCB-2] Length = 173 Score = 187 bits (476), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 87/158 (55%), Positives = 115/158 (72%), Gaps = 1/158 (0%) Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP- 86 R + + K L+TS+D+++ W R S +TFGLACCA+EMM A PR D+ RFG+ Sbjct: 10 REAEALMEKNVLLTSIDKVLNWGRGHSFWPVTFGLACCAIEMMAAGGPRVDISRFGYEVF 69 Query: 87 RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGC 146 RASPR +DVMIVAGT T KMA LR +YDQMPEP++VI+MGSCA+ GG + SYS++ G Sbjct: 70 RASPRHADVMIVAGTCTRKMAPLLRMIYDQMPEPKWVIAMGSCASAGGPFADSYSMLTGV 129 Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 D+IVPVD+Y+PGCPP E+L+YG+L LQ K+ V+ Sbjct: 130 DKIVPVDVYIPGCPPRPESLVYGLLQLQHKVNHPDKVR 167 >gi|297565713|ref|YP_003684685.1| NADH-quinone oxidoreductase subunit B [Meiothermus silvanus DSM 9946] gi|296850162|gb|ADH63177.1| NADH-quinone oxidoreductase, B subunit [Meiothermus silvanus DSM 9946] Length = 179 Score = 187 bits (476), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 87/154 (56%), Positives = 119/154 (77%), Gaps = 2/154 (1%) Query: 26 FSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA 85 FS+ E+ ++G L T++++LV W R+ SL TFGLACCA+EMM ++ R DL RFG Sbjct: 8 FSKDVQELENEGVLFTTLEKLVAWGRSNSLWPATFGLACCAIEMMASTDARNDLARFGSE 67 Query: 86 P-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR 144 RASPRQ+DVMIVAG L+ KMA +RRVYDQMP+P++VISMG+CA+ GG ++ +Y++V+ Sbjct: 68 VFRASPRQADVMIVAGRLSKKMAPVMRRVYDQMPDPKWVISMGACASSGGMFN-NYAIVQ 126 Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 D +VPVD+YVPGCPP EALIY ++ LQKK++ Sbjct: 127 NVDSVVPVDVYVPGCPPRPEALIYAVMQLQKKVQ 160 >gi|254456709|ref|ZP_05070137.1| NADH dehydrogenase i chain b [Campylobacterales bacterium GD 1] gi|207085501|gb|EDZ62785.1| NADH dehydrogenase i chain b [Campylobacterales bacterium GD 1] Length = 169 Score = 187 bits (475), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 84/139 (60%), Positives = 110/139 (79%), Gaps = 1/139 (0%) Query: 40 VTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVA 99 +TS+D++V W R+ SL +T+GLACC +EMM + RYD +RFG RASPRQ+DVMIVA Sbjct: 18 LTSIDKIVNWGRSNSLWALTYGLACCGIEMMASGASRYDFDRFGTIFRASPRQADVMIVA 77 Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGC 159 GTLT K A ++R+YDQM EPR+VISMGSCAN GG ++ +Y+ V+G DRI+PVD+Y+PGC Sbjct: 78 GTLTKKHAEFIKRLYDQMTEPRWVISMGSCANTGGMFN-TYATVQGVDRIIPVDLYLPGC 136 Query: 160 PPTAEALIYGILLLQKKIR 178 P E L YG++LLQ+KIR Sbjct: 137 APRPETLQYGVMLLQQKIR 155 >gi|154339768|ref|XP_001565841.1| NADH-ubiquinone oxidoreductase 20 kDa subunit,mitochondrial precursor [Leishmania braziliensis MHOM/BR/75/M2904] gi|134063159|emb|CAM45359.1| NADH-ubiquinone oxidoreductase 20 kDa subunit,mitochondrial precursor [Leishmania braziliensis MHOM/BR/75/M2904] Length = 201 Score = 187 bits (475), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 82/137 (59%), Positives = 108/137 (78%) Query: 42 SVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGT 101 ++ L W S +TFGLACCAVEMM + RYDL+RFG PR SPRQ++++IV+GT Sbjct: 55 TLHDLTEWVLAYSPWPLTFGLACCAVEMMHSYSSRYDLDRFGIVPRPSPRQAEIIIVSGT 114 Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP 161 +TNKMA LR +Y QM P++VISMGSCANGGGYYH+SY+V+RGC+R +PVD ++PGCPP Sbjct: 115 VTNKMAPLLRNIYVQMVNPKWVISMGSCANGGGYYHFSYAVLRGCERSIPVDFWIPGCPP 174 Query: 162 TAEALIYGILLLQKKIR 178 +AE+L++ + LQKKIR Sbjct: 175 SAESLVFCLHNLQKKIR 191 >gi|73544267|ref|XP_848028.1| NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial precursor [Leishmania major strain Friedlin] gi|146094718|ref|XP_001467361.1| NADH-ubiquinone oxidoreductase [Leishmania infantum JPCM5] gi|321398434|emb|CBZ08822.1| NADH-ubiquinone oxidoreductase 20 kDa subunit,mitochondrial precursor [Leishmania infantum JPCM5] gi|321438382|emb|CBZ12134.1| NADH-ubiquinone oxidoreductase 20 kDa subunit,mitochondrial precursor [Leishmania major strain Friedlin] gi|322492890|emb|CBZ28169.1| NADH-ubiquinone oxidoreductase 20 kDa subunit,mitochondrial precursor [Leishmania mexicana MHOM/GT/2001/U1103] gi|322500143|emb|CBZ35218.1| unnamed protein product [Leishmania donovani BPK282A1] Length = 201 Score = 187 bits (475), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 82/137 (59%), Positives = 108/137 (78%) Query: 42 SVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGT 101 ++ L W S +TFGLACCAVEMM + RYDL+RFG PR SPRQ++++IV+GT Sbjct: 55 TLHDLTEWVVAYSPWPLTFGLACCAVEMMHSYSSRYDLDRFGIVPRPSPRQAEIIIVSGT 114 Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP 161 +TNKMA LR +Y QM P++VISMGSCANGGGYYH+SY+V+RGC+R +PVD ++PGCPP Sbjct: 115 VTNKMAPLLRNIYVQMVNPKWVISMGSCANGGGYYHFSYAVLRGCERAIPVDFWIPGCPP 174 Query: 162 TAEALIYGILLLQKKIR 178 +AE+L++ + LQKKIR Sbjct: 175 SAESLVFCLHNLQKKIR 191 >gi|15806517|ref|NP_295228.1| NADH dehydrogenase subunit B [Deinococcus radiodurans R1] gi|81624845|sp|Q9RU87|NUOB_DEIRA RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|6459265|gb|AAF11070.1|AE001994_6 NADH dehydrogenase I, B subunit [Deinococcus radiodurans R1] Length = 181 Score = 187 bits (475), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 90/160 (56%), Positives = 120/160 (75%), Gaps = 6/160 (3%) Query: 20 EKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDL 79 E +D D+ + SE G L +S+++LV W R+ SL TFGLACCA+EMM ++ R D+ Sbjct: 5 ELIDRDWQELESE----GVLFSSLEKLVAWGRSNSLWPATFGLACCAIEMMSSTNARNDM 60 Query: 80 ERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY 138 RFG RASPRQ+DVMIVAG L+ KMA +RRVYDQMP+P++VISMG+CA+ GG ++ Sbjct: 61 SRFGSEVFRASPRQADVMIVAGRLSKKMAPVMRRVYDQMPDPKWVISMGACASSGGMFN- 119 Query: 139 SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 +Y+VV+ D +VPVDI+VPGCPP EALIY ++ LQKK+R Sbjct: 120 NYAVVQNVDSVVPVDIFVPGCPPRPEALIYAVMQLQKKVR 159 >gi|228917908|ref|ZP_04081444.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228949019|ref|ZP_04111292.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228968422|ref|ZP_04129414.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors [Bacillus thuringiensis serovar sotto str. T04001] gi|228988523|ref|ZP_04148611.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229076513|ref|ZP_04209474.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors [Bacillus cereus Rock4-18] gi|229094409|ref|ZP_04225481.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors [Bacillus cereus Rock3-42] gi|229099732|ref|ZP_04230658.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors [Bacillus cereus Rock3-29] gi|229118795|ref|ZP_04248145.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors [Bacillus cereus Rock1-3] gi|229124802|ref|ZP_04253981.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors [Bacillus cereus 95/8201] gi|229142039|ref|ZP_04270564.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors [Bacillus cereus BDRD-ST26] gi|229175973|ref|ZP_04303469.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors [Bacillus cereus MM3] gi|228607466|gb|EEK64792.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors [Bacillus cereus MM3] gi|228641328|gb|EEK97634.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors [Bacillus cereus BDRD-ST26] gi|228658677|gb|EEL14338.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors [Bacillus cereus 95/8201] gi|228664665|gb|EEL20157.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors [Bacillus cereus Rock1-3] gi|228683702|gb|EEL37654.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors [Bacillus cereus Rock3-29] gi|228688946|gb|EEL42773.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors [Bacillus cereus Rock3-42] gi|228706605|gb|EEL58817.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors [Bacillus cereus Rock4-18] gi|228771203|gb|EEM19681.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228791270|gb|EEM38880.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors [Bacillus thuringiensis serovar sotto str. T04001] gi|228810775|gb|EEM57123.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228841705|gb|EEM86816.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 148 Score = 187 bits (474), Expect = 8e-46, Method: Compositional matrix adjust. Identities = 88/136 (64%), Positives = 107/136 (78%) Query: 43 VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL 102 ++QL WAR+ SL MTFGLACCA+EMM YDL+RFG R SPRQSDVMIV+GT+ Sbjct: 1 MEQLKGWARSNSLWPMTFGLACCAIEMMGVGSSHYDLDRFGSFFRTSPRQSDVMIVSGTV 60 Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162 T KMA +RR+YDQMPEP++VI+MGSCA GG Y SY+VV+G D+IVPVD+Y+PGCPP Sbjct: 61 TKKMAPIVRRLYDQMPEPKWVIAMGSCATAGGPYVNSYAVVKGVDQIVPVDVYIPGCPPN 120 Query: 163 AEALIYGILLLQKKIR 178 ALIYGI L++KIR Sbjct: 121 PAALIYGINKLKEKIR 136 >gi|228936583|ref|ZP_04099378.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228823098|gb|EEM68935.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 148 Score = 187 bits (474), Expect = 8e-46, Method: Compositional matrix adjust. Identities = 88/136 (64%), Positives = 107/136 (78%) Query: 43 VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL 102 ++QL WAR+ SL MTFGLACCA+EMM YDL+RFG R SPRQSDVMIV+GT+ Sbjct: 1 MEQLKGWARSNSLWPMTFGLACCAIEMMGVGSSHYDLDRFGSFFRTSPRQSDVMIVSGTV 60 Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162 T KMA +RR+YDQMPEP++VI+MGSCA GG Y SY+VV+G D+IVPVD+Y+PGCPP Sbjct: 61 TKKMAPIVRRLYDQMPEPKWVIAMGSCATAGGPYVNSYAVVKGVDQIVPVDVYIPGCPPN 120 Query: 163 AEALIYGILLLQKKIR 178 ALIYGI L++KIR Sbjct: 121 PAALIYGINKLKEKIR 136 >gi|67528182|ref|XP_661901.1| hypothetical protein AN4297.2 [Aspergillus nidulans FGSC A4] gi|40740847|gb|EAA60037.1| hypothetical protein AN4297.2 [Aspergillus nidulans FGSC A4] Length = 184 Score = 186 bits (473), Expect = 9e-46, Method: Compositional matrix adjust. Identities = 86/102 (84%), Positives = 94/102 (92%) Query: 77 YDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY 136 YD +R G RASPRQSDVMIVAGTLTNKMA ALR+VYDQMP+PR+VISMGSCANGGGYY Sbjct: 72 YDQDRLGIIFRASPRQSDVMIVAGTLTNKMAPALRQVYDQMPDPRWVISMGSCANGGGYY 131 Query: 137 HYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 HYSYSVVRGCDRIVPVD+YVPGCPPT+EAL+YGI LQKK+R Sbjct: 132 HYSYSVVRGCDRIVPVDVYVPGCPPTSEALMYGIFQLQKKMR 173 >gi|326474729|gb|EGD98738.1| NADH-ubiquinone oxidoreductase subunit B [Trichophyton tonsurans CBS 112818] Length = 204 Score = 186 bits (473), Expect = 9e-46, Method: Compositional matrix adjust. Identities = 94/141 (66%), Positives = 105/141 (74%), Gaps = 14/141 (9%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 + +T++DQ+ WAR GSL MTFGLACCAVEMM S PRYD +R G RASPRQSDVMI Sbjct: 67 YALTTLDQVANWARQGSLWPMTFGLACCAVEMMHLSTPRYDQDRLGIIFRASPRQSDVMI 126 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGTLTNKMA ALR+VYDQMP P G Y YSV RGCDRIVPVDIYVP Sbjct: 127 VAGTLTNKMAPALRQVYDQMPGPTL----------GDY----YSVTRGCDRIVPVDIYVP 172 Query: 158 GCPPTAEALIYGILLLQKKIR 178 GCPPT+EAL+YGI LQ+K+R Sbjct: 173 GCPPTSEALMYGIFQLQRKMR 193 >gi|325996536|gb|ADZ51941.1| NADH-ubiquinone oxidoreductase chain B [Helicobacter pylori 2018] gi|325998125|gb|ADZ50333.1| NADH-ubiquinone oxidoreductase chain B [Helicobacter pylori 2017] Length = 159 Score = 186 bits (473), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 85/146 (58%), Positives = 113/146 (77%), Gaps = 1/146 (0%) Query: 39 LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIV 98 +++++D+L+ W R+ SL +T+GLACCA+EMM R+D +RFG RASPRQSDVMI+ Sbjct: 7 ILSTLDKLLNWGRSNSLWPLTYGLACCAIEMMATGGSRFDFDRFGTIFRASPRQSDVMII 66 Query: 99 AGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPG 158 AGTLT K A +RR+YDQMPEP++VISMGSCAN GG ++ +Y+ V+G DRIVPVDIY+PG Sbjct: 67 AGTLTKKHAEFMRRLYDQMPEPKWVISMGSCANTGGMFN-TYATVQGADRIVPVDIYLPG 125 Query: 159 CPPTAEALIYGILLLQKKIRRVGNVK 184 C P E L Y +++LQ KIRR +K Sbjct: 126 CAPRPETLQYALMVLQDKIRRSKAIK 151 >gi|291296255|ref|YP_003507653.1| NADH-quinone oxidoreductase B subunit [Meiothermus ruber DSM 1279] gi|290471214|gb|ADD28633.1| NADH-quinone oxidoreductase, B subunit [Meiothermus ruber DSM 1279] Length = 179 Score = 186 bits (473), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 85/154 (55%), Positives = 119/154 (77%), Gaps = 2/154 (1%) Query: 26 FSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA 85 F++ E+ ++G L T++++L+ W R+ SL TFGLACCA+EMM ++ R DL RFG Sbjct: 8 FTKDVQELENEGVLFTTLEKLIAWGRSNSLWPATFGLACCAIEMMASTDARNDLSRFGSE 67 Query: 86 P-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR 144 RASPRQ+DVMIVAG L+ KMA +RRVYDQMP+P++VISMG+CA+ GG ++ +Y++V+ Sbjct: 68 VFRASPRQADVMIVAGRLSKKMAPVMRRVYDQMPDPKWVISMGACASSGGMFN-NYAIVQ 126 Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 D +VPVD++VPGCPP EALIY ++ LQKKI+ Sbjct: 127 NVDSVVPVDVFVPGCPPRPEALIYAVMQLQKKIQ 160 >gi|208435155|ref|YP_002266821.1| NADH-ubiquinone oxidoreductase chain B [Helicobacter pylori G27] gi|210135420|ref|YP_002301859.1| NADH dehydrogenase subunit B [Helicobacter pylori P12] gi|217032322|ref|ZP_03437818.1| hypothetical protein HPB128_132g20 [Helicobacter pylori B128] gi|254779804|ref|YP_003057910.1| NADH dehydrogenase subunit B [Helicobacter pylori B38] gi|298735715|ref|YP_003728240.1| NADH dehydrogenase I subunit B [Helicobacter pylori B8] gi|308183371|ref|YP_003927498.1| NADH dehydrogenase subunit B [Helicobacter pylori PeCan4] gi|308185009|ref|YP_003929142.1| NADH dehydrogenase subunit B [Helicobacter pylori SJM180] gi|238065158|sp|B6JNA1|NUOB_HELP2 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|238065159|sp|B5Z8Q6|NUOB_HELPG RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|208433084|gb|ACI27955.1| NADH-ubiquinone oxidoreductase chain B [Helicobacter pylori G27] gi|210133388|gb|ACJ08379.1| NADH-ubiquinone oxidoreductase chain B [Helicobacter pylori P12] gi|216945988|gb|EEC24602.1| hypothetical protein HPB128_132g20 [Helicobacter pylori B128] gi|254001716|emb|CAX29947.1| NADH-ubiquinone oxidoreductase, NQO6 subunit [Helicobacter pylori B38] gi|261838584|gb|ACX98350.1| NADH-ubiquinone oxidoreductase chain B [Helicobacter pylori 51] gi|261839979|gb|ACX99744.1| NADH dehydrogenase subunit B [Helicobacter pylori 52] gi|298354904|emb|CBI65776.1| NADH dehydrogenase I chain B [Helicobacter pylori B8] gi|308060929|gb|ADO02825.1| NADH dehydrogenase subunit B [Helicobacter pylori SJM180] gi|308065556|gb|ADO07448.1| NADH dehydrogenase subunit B [Helicobacter pylori PeCan4] gi|317013049|gb|ADU83657.1| NADH dehydrogenase subunit B [Helicobacter pylori Lithuania75] gi|317014652|gb|ADU82088.1| NADH dehydrogenase subunit B [Helicobacter pylori Gambia94/24] Length = 159 Score = 186 bits (472), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 85/146 (58%), Positives = 113/146 (77%), Gaps = 1/146 (0%) Query: 39 LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIV 98 +++++D+L+ W R+ SL +T+GLACCA+EMM R+D +RFG RASPRQSDVMI+ Sbjct: 7 VLSTLDKLLNWGRSNSLWPLTYGLACCAIEMMATGGSRFDFDRFGTIFRASPRQSDVMII 66 Query: 99 AGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPG 158 AGTLT K A +RR+YDQMPEP++VISMGSCAN GG ++ +Y+ V+G DRIVPVDIY+PG Sbjct: 67 AGTLTKKHAEFMRRLYDQMPEPKWVISMGSCANTGGMFN-TYATVQGADRIVPVDIYLPG 125 Query: 159 CPPTAEALIYGILLLQKKIRRVGNVK 184 C P E L Y +++LQ KIRR +K Sbjct: 126 CAPRPETLQYALMVLQDKIRRSKAIK 151 >gi|328950032|ref|YP_004367367.1| NAD(P)H-quinone oxidoreductase subunit K [Marinithermus hydrothermalis DSM 14884] gi|328450356|gb|AEB11257.1| NAD(P)H-quinone oxidoreductase subunit K [Marinithermus hydrothermalis DSM 14884] Length = 179 Score = 186 bits (471), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 87/154 (56%), Positives = 116/154 (75%), Gaps = 2/154 (1%) Query: 26 FSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA 85 F R E+ +G T++++LV W R+ SL TFGLACCA+EMM ++ R DL RFG Sbjct: 7 FERDVQELERQGVFFTTLEKLVAWGRSNSLWPATFGLACCAIEMMASTDARNDLARFGSE 66 Query: 86 P-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR 144 RASPRQ+DVMIVAG L+ KMA +RRVYDQMP+P++VISMG+CA+ GG ++ +Y++V+ Sbjct: 67 VFRASPRQADVMIVAGRLSKKMAPVMRRVYDQMPDPKWVISMGACASSGGMFN-NYAIVQ 125 Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 D +VPVD++VPGCPP EALIY ++ LQKKIR Sbjct: 126 NVDSVVPVDVFVPGCPPRPEALIYAVMQLQKKIR 159 >gi|268678781|ref|YP_003303212.1| NADH-quinone oxidoreductase subunit beta [Sulfurospirillum deleyianum DSM 6946] gi|268616812|gb|ACZ11177.1| NADH-quinone oxidoreductase, B subunit [Sulfurospirillum deleyianum DSM 6946] Length = 169 Score = 186 bits (471), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 85/139 (61%), Positives = 110/139 (79%), Gaps = 1/139 (0%) Query: 40 VTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVA 99 +T+VD+LV W R+ SL +T+GLACCA+EMM RYD +RFG RASPRQ+DV+++A Sbjct: 18 LTTVDKLVQWGRSNSLWPLTYGLACCAIEMMATGASRYDFDRFGTIFRASPRQADVIVIA 77 Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGC 159 GTLT K A +RR+YDQMP+P++VISMGSCAN GG ++ +Y+ V+G DRIVPVDIY+PGC Sbjct: 78 GTLTKKHAPFMRRLYDQMPDPKWVISMGSCANTGGMFN-TYATVQGADRIVPVDIYLPGC 136 Query: 160 PPTAEALIYGILLLQKKIR 178 P E L Y ++LLQKKIR Sbjct: 137 APRPETLQYALMLLQKKIR 155 >gi|226355360|ref|YP_002785100.1| NADH dehydrogenase subunit B [Deinococcus deserti VCD115] gi|259514659|sp|C1D0H2|NUOB_DEIDV RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|226317350|gb|ACO45346.1| putative NADH dehydrogenase (quinone), subunit B (NADH-quinone oxidoreductase, subunit B) [Deinococcus deserti VCD115] Length = 178 Score = 186 bits (471), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 86/154 (55%), Positives = 117/154 (75%), Gaps = 2/154 (1%) Query: 26 FSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA 85 F R E+ +G L +++++LV W R+ SL TFGLACCA+EMM ++ R D+ RFG Sbjct: 7 FDRDWQELESEGILFSNLEKLVAWGRSNSLWPATFGLACCAIEMMSSTNARNDMARFGSE 66 Query: 86 P-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR 144 RASPRQ+DVMIVAG L+ KMA +RRVYDQMP+P++VI+MG+CA+ GG ++ +Y++V+ Sbjct: 67 VFRASPRQADVMIVAGRLSKKMAPVMRRVYDQMPDPKWVIAMGACASSGGMFN-NYAIVQ 125 Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 D +VPVDIYVPGCPP EALIY ++ LQKK+R Sbjct: 126 NVDSVVPVDIYVPGCPPRPEALIYAVMQLQKKVR 159 >gi|154148789|ref|YP_001405790.1| NADH dehydrogenase subunit B [Campylobacter hominis ATCC BAA-381] gi|218527983|sp|A7HZU9|NUOB_CAMHC RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|153804798|gb|ABS51805.1| NADH-quinone oxidoreductase, b subunit [Campylobacter hominis ATCC BAA-381] Length = 169 Score = 186 bits (471), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 83/141 (58%), Positives = 110/141 (78%), Gaps = 1/141 (0%) Query: 39 LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIV 98 ++T++D+LV W R+ SL M +GLACCA+EMM RYD +RFG RAS +QS+VM++ Sbjct: 17 VLTTIDKLVNWGRSNSLWAMNYGLACCAIEMMATGASRYDFDRFGTIFRASAKQSEVMVI 76 Query: 99 AGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPG 158 AGTL+ K A RR+YD MPEP++VISMGSCAN GG ++ +Y+VV+GCDRI+PVDIY+PG Sbjct: 77 AGTLSKKHAELARRLYDAMPEPKWVISMGSCANTGGMFN-TYAVVQGCDRIIPVDIYLPG 135 Query: 159 CPPTAEALIYGILLLQKKIRR 179 C P E L Y +++LQKKIRR Sbjct: 136 CAPRPETLQYALMILQKKIRR 156 >gi|124515815|gb|EAY57324.1| NADH dehydrogenase (ubiquinone), B subunit [Leptospirillum rubarum] Length = 178 Score = 186 bits (471), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 90/142 (63%), Positives = 112/142 (78%), Gaps = 2/142 (1%) Query: 39 LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMI 97 L +V++L+ W+R +L MTFGLACCA+EMM A R+D++RFG RASPRQSD+MI Sbjct: 18 LQDAVNELLNWSRKSALWPMTFGLACCAIEMMGAVASRFDIDRFGAGVFRASPRQSDLMI 77 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGTLT KMA +RR+YDQMPEPRYVI+MGSCA G Y SYSVV+G DRI+PVD+YVP Sbjct: 78 VAGTLTRKMAPVVRRIYDQMPEPRYVIAMGSCATSGNIYD-SYSVVQGVDRIIPVDVYVP 136 Query: 158 GCPPTAEALIYGILLLQKKIRR 179 GCPP EAL+ G++ LQ+KI + Sbjct: 137 GCPPRPEALLDGLMKLQEKIMK 158 >gi|15612247|ref|NP_223900.1| NADH dehydrogenase subunit B [Helicobacter pylori J99] gi|81625872|sp|Q9ZJW6|NUOB_HELPJ RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|4155792|gb|AAD06768.1| NADH oxidoreductase I [Helicobacter pylori J99] gi|308064039|gb|ADO05926.1| NADH dehydrogenase subunit B [Helicobacter pylori Sat464] Length = 159 Score = 186 bits (471), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 84/146 (57%), Positives = 113/146 (77%), Gaps = 1/146 (0%) Query: 39 LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIV 98 +++++D+L+ W R+ SL +T+GLACCA+EMM R+D +RFG RASPRQSDVMI+ Sbjct: 7 ILSTLDKLLNWGRSNSLWPLTYGLACCAIEMMATGGSRFDFDRFGTIFRASPRQSDVMII 66 Query: 99 AGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPG 158 AGTLT K A +RR+YDQMPEP++VISMGSCAN GG ++ +Y+ V+G DR+VPVDIY+PG Sbjct: 67 AGTLTKKHAEFMRRLYDQMPEPKWVISMGSCANTGGMFN-TYATVQGADRVVPVDIYLPG 125 Query: 159 CPPTAEALIYGILLLQKKIRRVGNVK 184 C P E L Y +++LQ KIRR +K Sbjct: 126 CAPRPETLQYALMVLQDKIRRSKAIK 151 >gi|320449689|ref|YP_004201785.1| NADH-quinone oxidoreductase subunit B [Thermus scotoductus SA-01] gi|320149858|gb|ADW21236.1| NADH-quinone oxidoreductase, subunit B [Thermus scotoductus SA-01] Length = 181 Score = 186 bits (471), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 86/154 (55%), Positives = 117/154 (75%), Gaps = 2/154 (1%) Query: 26 FSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA 85 F R E+ +G L T++++LV W R+ SL TFGLACCA+EMM ++ R DL RFG Sbjct: 7 FERDVQELEREGILFTTLEKLVAWGRSNSLWPATFGLACCAIEMMASTDARNDLARFGSE 66 Query: 86 P-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR 144 RASPRQ+DVMIVAG L+ KMA +RRV++QMP+P++VISMG+CA+ GG ++ +Y++V+ Sbjct: 67 VFRASPRQADVMIVAGRLSKKMAPVMRRVWEQMPDPKWVISMGACASSGGMFN-NYAIVQ 125 Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 D +VPVD+YVPGCPP EALIY ++ LQKK+R Sbjct: 126 NVDSVVPVDVYVPGCPPRPEALIYAVMQLQKKVR 159 >gi|109946844|ref|YP_664072.1| NADH dehydrogenase subunit B [Helicobacter acinonychis str. Sheeba] gi|122973434|sp|Q17Z53|NUOB_HELAH RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|109714065|emb|CAJ99073.1| NADH dehydrogenase I chain B [Helicobacter acinonychis str. Sheeba] gi|317011461|gb|ADU85208.1| NADH dehydrogenase subunit B [Helicobacter pylori SouthAfrica7] Length = 159 Score = 186 bits (471), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 84/146 (57%), Positives = 113/146 (77%), Gaps = 1/146 (0%) Query: 39 LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIV 98 +++++D+L+ W R+ SL +T+GLACCA+EMM R+D +RFG RASPRQSDVMI+ Sbjct: 7 VLSTLDKLLNWGRSNSLWPLTYGLACCAIEMMATGGSRFDFDRFGTIFRASPRQSDVMII 66 Query: 99 AGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPG 158 AGTLT K A +RR+YDQMPEP++VISMGSCAN GG ++ +Y+ V+G DRI+PVDIY+PG Sbjct: 67 AGTLTKKHAEFMRRLYDQMPEPKWVISMGSCANTGGMFN-TYATVQGADRIIPVDIYLPG 125 Query: 159 CPPTAEALIYGILLLQKKIRRVGNVK 184 C P E L Y +++LQ KIRR +K Sbjct: 126 CAPRPETLQYALMVLQDKIRRSKAIK 151 >gi|121534363|ref|ZP_01666187.1| NADH-quinone oxidoreductase, B subunit [Thermosinus carboxydivorans Nor1] gi|121307133|gb|EAX48051.1| NADH-quinone oxidoreductase, B subunit [Thermosinus carboxydivorans Nor1] Length = 173 Score = 186 bits (471), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 88/155 (56%), Positives = 119/155 (76%), Gaps = 1/155 (0%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RAS 89 E+ K ++T+V+ +++WAR SL +T GLACCA+EMM A+ R+DL RFG+ R S Sbjct: 13 QELLAKNIILTTVETVLSWARGNSLWPLTSGLACCAIEMMCAASGRFDLARFGYEVFRPS 72 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQ+D++I AGTLT KMA L+R+Y+QMPEP+YVI+MGSCAN GG + SY+VV G D + Sbjct: 73 PRQADLLIAAGTLTWKMAPVLKRLYEQMPEPKYVIAMGSCANTGGPFADSYAVVPGVDYV 132 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 +PVD+Y+PGCPP EALI+GIL L++KI+ G VK Sbjct: 133 IPVDVYIPGCPPRPEALIHGILQLKRKIQNPGVVK 167 >gi|32267101|ref|NP_861133.1| NADH dehydrogenase subunit B [Helicobacter hepaticus ATCC 51449] gi|81665416|sp|Q7VFS3|NUOB_HELHP RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|32263153|gb|AAP78199.1| donor-ubiquinone reductase I [Helicobacter hepaticus ATCC 51449] Length = 169 Score = 185 bits (470), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 84/142 (59%), Positives = 114/142 (80%), Gaps = 1/142 (0%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 +++SVD+L+ W+R+ SL +T+GLACCA+EMM R+DL+RFG RASPRQSD+MI Sbjct: 16 IVLSSVDKLLNWSRSNSLWGVTYGLACCAIEMMATGGSRFDLDRFGSIFRASPRQSDLMI 75 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 ++GT+T K A +RR+YDQMPEP++VISMGSCAN GG ++ +Y+ V+G DRI+PVDIY+P Sbjct: 76 ISGTVTKKHAEFVRRLYDQMPEPKWVISMGSCANTGGMFN-TYATVQGVDRIIPVDIYLP 134 Query: 158 GCPPTAEALIYGILLLQKKIRR 179 GC P E L Y I++LQ+KIRR Sbjct: 135 GCAPRPETLQYAIMVLQQKIRR 156 >gi|15645875|ref|NP_208053.1| NADH dehydrogenase subunit B [Helicobacter pylori 26695] gi|108563630|ref|YP_627946.1| NADH dehydrogenase subunit B [Helicobacter pylori HPAG1] gi|188528050|ref|YP_001910737.1| NADH dehydrogenase subunit B [Helicobacter pylori Shi470] gi|207091614|ref|ZP_03239401.1| NADH dehydrogenase subunit B [Helicobacter pylori HPKX_438_AG0C1] gi|207108182|ref|ZP_03242344.1| NADH dehydrogenase subunit B [Helicobacter pylori HPKX_438_CA4C1] gi|217033582|ref|ZP_03439010.1| hypothetical protein HP9810_899g18 [Helicobacter pylori 98-10] gi|81555857|sp|O25851|NUOB_HELPY RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|123073732|sp|Q1CS00|NUOB_HELPH RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|238065160|sp|B2UV25|NUOB_HELPS RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|2314428|gb|AAD08307.1| NADH-ubiquinone oxidoreductase, NQO6 subunit (NQO6) [Helicobacter pylori 26695] gi|107837403|gb|ABF85272.1| NADH-ubiquinone oxidoreductase chain B [Helicobacter pylori HPAG1] gi|188144290|gb|ACD48707.1| NADH dehydrogenase subunit B [Helicobacter pylori Shi470] gi|216943928|gb|EEC23362.1| hypothetical protein HP9810_899g18 [Helicobacter pylori 98-10] gi|297380441|gb|ADI35328.1| NADH-quinone oxidoreductase, B subunit [Helicobacter pylori v225d] gi|308062545|gb|ADO04433.1| NADH dehydrogenase subunit B [Helicobacter pylori Cuz20] gi|315587152|gb|ADU41533.1| NADH-quinone oxidoreductase subunit B [Helicobacter pylori 35A] gi|317009945|gb|ADU80525.1| NADH dehydrogenase subunit B [Helicobacter pylori India7] gi|317178004|dbj|BAJ55793.1| NADH dehydrogenase subunit B [Helicobacter pylori F16] gi|317178445|dbj|BAJ56233.1| NADH dehydrogenase subunit B [Helicobacter pylori F30] gi|317180987|dbj|BAJ58773.1| NADH dehydrogenase subunit B [Helicobacter pylori F32] gi|317182510|dbj|BAJ60294.1| NADH dehydrogenase subunit B [Helicobacter pylori F57] gi|332674064|gb|AEE70881.1| NADH-quinone oxidoreductase subunit B [Helicobacter pylori 83] Length = 159 Score = 185 bits (470), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 84/146 (57%), Positives = 113/146 (77%), Gaps = 1/146 (0%) Query: 39 LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIV 98 +++++D+L+ W R+ SL +T+GLACCA+EMM R+D +RFG RASPRQSDVMI+ Sbjct: 7 VLSTLDKLLNWGRSNSLWPLTYGLACCAIEMMATGGSRFDFDRFGTIFRASPRQSDVMII 66 Query: 99 AGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPG 158 AGTLT K A +RR+YDQMPEP++VISMGSCAN GG ++ +Y+ V+G DR+VPVDIY+PG Sbjct: 67 AGTLTKKHAEFMRRLYDQMPEPKWVISMGSCANTGGMFN-TYATVQGADRVVPVDIYLPG 125 Query: 159 CPPTAEALIYGILLLQKKIRRVGNVK 184 C P E L Y +++LQ KIRR +K Sbjct: 126 CAPRPETLQYALMVLQDKIRRSKAIK 151 >gi|94985017|ref|YP_604381.1| NADH-quinone oxidoreductase, B subunit [Deinococcus geothermalis DSM 11300] gi|238055292|sp|Q1IZX2|NUOB_DEIGD RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|94555298|gb|ABF45212.1| NADH dehydrogenase subunit B [Deinococcus geothermalis DSM 11300] Length = 178 Score = 185 bits (470), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 87/154 (56%), Positives = 117/154 (75%), Gaps = 2/154 (1%) Query: 26 FSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA 85 F R E+ +G L +++++LV W R+ SL TFGLACCA+EMM ++ R DL RFG Sbjct: 7 FDRDWQELESEGVLFSTLEKLVAWGRSNSLWPATFGLACCAIEMMSSTDGRNDLSRFGSE 66 Query: 86 P-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR 144 RASPRQ+DVMIVAG L+ KMA +RRVYDQMP+P++VISMG+CA+ GG ++ +Y+VV+ Sbjct: 67 VFRASPRQADVMIVAGRLSKKMAPIMRRVYDQMPDPKWVISMGACASSGGMFN-NYAVVQ 125 Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 D +VPVD++VPGCPP EALIY ++ LQKK+R Sbjct: 126 NVDHVVPVDVFVPGCPPRPEALIYAVMQLQKKVR 159 >gi|86158994|ref|YP_465779.1| NADH dehydrogenase subunit B [Anaeromyxobacter dehalogenans 2CP-C] gi|123498614|sp|Q2IL09|NUOB2_ANADE RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName: Full=NADH dehydrogenase I subunit B 2; AltName: Full=NDH-1 subunit B 2 gi|85775505|gb|ABC82342.1| NADH dehydrogenase subunit B [Anaeromyxobacter dehalogenans 2CP-C] Length = 173 Score = 185 bits (470), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 90/151 (59%), Positives = 110/151 (72%), Gaps = 4/151 (2%) Query: 29 ISSEITHKGFLVTS-VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87 I E+T L TS +D L+ AR SL ++TFGLACC +E+MQ PR DL RFG PR Sbjct: 9 IGGEVT---LLHTSQLDNLINLARASSLYYLTFGLACCGIELMQTGGPRADLMRFGAIPR 65 Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCD 147 ASPRQ+D MIVAGTLT KMA R +YDQMPEP+YVISMGSC+N GG + YSV +G D Sbjct: 66 ASPRQADFMIVAGTLTYKMAERARLLYDQMPEPKYVISMGSCSNCGGLFQLGYSVCKGVD 125 Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 +++PVD+YVPGCPP EAL G+L LQ+ +R Sbjct: 126 KVIPVDVYVPGCPPRPEALTEGLLRLQEIVR 156 >gi|46200221|ref|YP_005888.1| NADH-quinone oxidoreductase chain B [Thermus thermophilus HB27] gi|55980054|ref|YP_143351.1| NADH dehydrogenase subunit B [Thermus thermophilus HB8] gi|2499331|sp|Q56218|NQO6_THET8 RecName: Full=NADH-quinone oxidoreductase subunit 6; AltName: Full=NADH dehydrogenase I subunit 6; AltName: Full=NDH-1 subunit 6 gi|81405216|sp|Q72GC9|NUOB_THET2 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|90109659|pdb|2FUG|6 Chain 6, Crystal Structure Of The Hydrophilic Domain Of Respiratory Complex I From Thermus Thermophilus gi|90109667|pdb|2FUG|F Chain F, Crystal Structure Of The Hydrophilic Domain Of Respiratory Complex I From Thermus Thermophilus gi|90109675|pdb|2FUG|O Chain O, Crystal Structure Of The Hydrophilic Domain Of Respiratory Complex I From Thermus Thermophilus gi|90109683|pdb|2FUG|X Chain X, Crystal Structure Of The Hydrophilic Domain Of Respiratory Complex I From Thermus Thermophilus gi|258588593|pdb|3I9V|6 Chain 6, Crystal Structure Of The Hydrophilic Domain Of Respiratory Complex I From Thermus Thermophilus, Oxidized, 2 MolASU gi|258588601|pdb|3I9V|F Chain F, Crystal Structure Of The Hydrophilic Domain Of Respiratory Complex I From Thermus Thermophilus, Oxidized, 2 MolASU gi|258588609|pdb|3IAM|6 Chain 6, Crystal Structure Of The Hydrophilic Domain Of Respiratory Complex I From Thermus Thermophilus, Reduced, 2 MolASU, With Bound Nadh gi|258588617|pdb|3IAM|F Chain F, Crystal Structure Of The Hydrophilic Domain Of Respiratory Complex I From Thermus Thermophilus, Reduced, 2 MolASU, With Bound Nadh gi|258588625|pdb|3IAS|6 Chain 6, Crystal Structure Of The Hydrophilic Domain Of Respiratory Complex I From Thermus Thermophilus, Oxidized, 4 MolASU, Re-Refined To 3.15 Angstrom Resolution gi|258588633|pdb|3IAS|F Chain F, Crystal Structure Of The Hydrophilic Domain Of Respiratory Complex I From Thermus Thermophilus, Oxidized, 4 MolASU, Re-Refined To 3.15 Angstrom Resolution gi|258588641|pdb|3IAS|O Chain O, Crystal Structure Of The Hydrophilic Domain Of Respiratory Complex I From Thermus Thermophilus, Oxidized, 4 MolASU, Re-Refined To 3.15 Angstrom Resolution gi|258588649|pdb|3IAS|X Chain X, Crystal Structure Of The Hydrophilic Domain Of Respiratory Complex I From Thermus Thermophilus, Oxidized, 4 MolASU, Re-Refined To 3.15 Angstrom Resolution gi|296863609|pdb|3M9S|6 Chain 6, Crystal Structure Of Respiratory Complex I From Thermus Thermophilus gi|296863622|pdb|3M9S|F Chain F, Crystal Structure Of Respiratory Complex I From Thermus Thermophilus gi|1279862|gb|AAA97939.1| NADH dehydrogenase I, subunit NQO6 [Thermus thermophilus] gi|46197849|gb|AAS82261.1| NADH-quinone oxidoreductase chain B [Thermus thermophilus HB27] gi|55771467|dbj|BAD69908.1| NADH-quinone oxidoreductase chain 6 [Thermus thermophilus HB8] Length = 181 Score = 185 bits (470), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 86/154 (55%), Positives = 117/154 (75%), Gaps = 2/154 (1%) Query: 26 FSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA 85 F R E+ +G L T++++LV W R+ SL TFGLACCA+EMM ++ R DL RFG Sbjct: 7 FERDVQELEREGILFTTLEKLVAWGRSNSLWPATFGLACCAIEMMASTDARNDLARFGSE 66 Query: 86 P-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR 144 RASPRQ+DVMIVAG L+ KMA +RRV++QMP+P++VISMG+CA+ GG ++ +Y++V+ Sbjct: 67 VFRASPRQADVMIVAGRLSKKMAPVMRRVWEQMPDPKWVISMGACASSGGMFN-NYAIVQ 125 Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 D +VPVD+YVPGCPP EALIY ++ LQKK+R Sbjct: 126 NVDSVVPVDVYVPGCPPRPEALIYAVMQLQKKVR 159 >gi|206889652|ref|YP_002248950.1| NADH-quinone oxidoreductase chain b 2 [Thermodesulfovibrio yellowstonii DSM 11347] gi|238065044|sp|B5YL35|NUOB2_THEYD RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName: Full=NADH dehydrogenase I subunit B 2; AltName: Full=NDH-1 subunit B 2 gi|206741590|gb|ACI20647.1| NADH-quinone oxidoreductase chain b 2 [Thermodesulfovibrio yellowstonii DSM 11347] Length = 174 Score = 185 bits (469), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 85/147 (57%), Positives = 114/147 (77%), Gaps = 1/147 (0%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 I ++T++D++V W R+ SL +TFGLACCA+EMM A DL+RFG RASPRQ Sbjct: 20 IKGSNVIITTLDKVVNWGRSNSLWPLTFGLACCAIEMMAAGASHLDLDRFGILFRASPRQ 79 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 +DV+I+AGT+T KMA ++RVYDQMPEP+YVI+MGSCA GG ++ +YS V+G D+ +PV Sbjct: 80 ADVIIIAGTVTYKMAPIVKRVYDQMPEPKYVIAMGSCACTGGIFN-TYSTVQGADQFLPV 138 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179 D+YVPGCPP EAL+YG+L L++KI R Sbjct: 139 DVYVPGCPPRPEALMYGVLKLKEKIMR 165 >gi|206602059|gb|EDZ38541.1| NADH dehydrogenase (ubiquinone), B subunit [Leptospirillum sp. Group II '5-way CG'] Length = 178 Score = 185 bits (469), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 89/142 (62%), Positives = 112/142 (78%), Gaps = 2/142 (1%) Query: 39 LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMI 97 L +V++++ W+R +L MTFGLACCA+EMM A R+D++RFG RASPRQSD+MI Sbjct: 18 LQDAVNEMLNWSRKSALWPMTFGLACCAIEMMGAVASRFDIDRFGAGVFRASPRQSDLMI 77 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGTLT KMA +RR+YDQMPEPRYVI+MGSCA G Y SYSVV+G DRI+PVD+YVP Sbjct: 78 VAGTLTRKMAPVVRRIYDQMPEPRYVIAMGSCATSGNIYD-SYSVVQGVDRIIPVDVYVP 136 Query: 158 GCPPTAEALIYGILLLQKKIRR 179 GCPP EAL+ G++ LQ+KI + Sbjct: 137 GCPPRPEALLDGLMKLQEKIMK 158 >gi|295697422|ref|YP_003590660.1| NADH-quinone oxidoreductase, B subunit [Bacillus tusciae DSM 2912] gi|295413024|gb|ADG07516.1| NADH-quinone oxidoreductase, B subunit [Bacillus tusciae DSM 2912] Length = 177 Score = 184 bits (468), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 85/151 (56%), Positives = 115/151 (76%) Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87 ++ + + ++T+++++ WAR+ S+ ++FGLACCA+EMM S YD +RFG R Sbjct: 13 QLEEKELERNVVLTTLEKVKAWARSNSMWPLSFGLACCAIEMMATSGSHYDADRFGVFFR 72 Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCD 147 ASPRQ+D+MIV+GT+T KMA LRR+YDQM EPR+VI+MGSCA GG Y SYSVV G D Sbjct: 73 ASPRQADLMIVSGTVTKKMAPLLRRLYDQMAEPRWVIAMGSCATAGGPYVRSYSVVNGVD 132 Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 +IVPVD+Y+PGCPP+ ALIYG+ LQ+KIR Sbjct: 133 QIVPVDVYIPGCPPSPVALIYGLNKLQEKIR 163 >gi|326800573|ref|YP_004318392.1| NAD(P)H-quinone oxidoreductase subunit K [Sphingobacterium sp. 21] gi|326551337|gb|ADZ79722.1| NAD(P)H-quinone oxidoreductase subunit K [Sphingobacterium sp. 21] Length = 163 Score = 184 bits (468), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 87/149 (58%), Positives = 112/149 (75%), Gaps = 1/149 (0%) Query: 30 SSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS 89 +S T G +V +D L+ WAR S+ ++FG+ACCA+EMM A YDL+R+G PRAS Sbjct: 3 TSTQTDSGIVVAKLDDLLNWARLSSMWPVSFGIACCAIEMMGAMAATYDLDRYGVFPRAS 62 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCAN-GGGYYHYSYSVVRGCDR 148 PRQ+DV+I+AGT+T KMA +R +Y+QMPEP+YVISMGSC+N GG Y+ + Y VV+G D+ Sbjct: 63 PRQADVIIIAGTVTFKMADRIRLLYEQMPEPKYVISMGSCSNCGGPYWQHGYHVVKGVDK 122 Query: 149 IVPVDIYVPGCPPTAEALIYGILLLQKKI 177 I+PVDIYV GCPP EALI L LQKKI Sbjct: 123 IIPVDIYVQGCPPRPEALIGAFLELQKKI 151 >gi|302035990|ref|YP_003796312.1| NADH-quinone oxidoreductase subunit B [Candidatus Nitrospira defluvii] gi|300604054|emb|CBK40386.1| NADH-quinone oxidoreductase, subunit B [Candidatus Nitrospira defluvii] Length = 159 Score = 184 bits (467), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 89/144 (61%), Positives = 112/144 (77%), Gaps = 2/144 (1%) Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95 L T++D V WAR SL MTFGLACCA+EM+ + RYD++RFG RASPRQSD+ Sbjct: 11 NILTTNLDAFVGWARKSSLWPMTFGLACCAIEMIASVSSRYDIDRFGAGVFRASPRQSDL 70 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155 MIVAGT++ KMA +RR+YDQM EPRYVISMGSCA G +Y+ SY+VV+G D+IVPVD+Y Sbjct: 71 MIVAGTVSRKMAPVIRRIYDQMAEPRYVISMGSCATSGNHYN-SYAVVQGVDQIVPVDVY 129 Query: 156 VPGCPPTAEALIYGILLLQKKIRR 179 + GCPP EAL+ G+L LQ+KI+R Sbjct: 130 IAGCPPRPEALLDGLLKLQEKIQR 153 >gi|257459165|ref|ZP_05624284.1| NADH-quinone oxidoreductase, B subunit [Campylobacter gracilis RM3268] gi|257443550|gb|EEV18674.1| NADH-quinone oxidoreductase, B subunit [Campylobacter gracilis RM3268] Length = 169 Score = 184 bits (467), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 84/140 (60%), Positives = 110/140 (78%), Gaps = 1/140 (0%) Query: 39 LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIV 98 ++T+VD+L+ W R+ SL MT+GLACCA+EMM A R+D +RFG RAS +QSDVMI+ Sbjct: 17 VLTTVDKLIAWGRSNSLWAMTYGLACCAIEMMAAGAGRFDFDRFGTIFRASAKQSDVMII 76 Query: 99 AGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPG 158 AGTL+ K A RR+YD MPEP++VISMGSCAN GG ++ +Y+ V+GCDRIVPVDIY+PG Sbjct: 77 AGTLSKKHAEFTRRLYDAMPEPKWVISMGSCANTGGMFN-TYATVQGCDRIVPVDIYLPG 135 Query: 159 CPPTAEALIYGILLLQKKIR 178 C P E L + +++LQKKIR Sbjct: 136 CAPRPETLQFAMMVLQKKIR 155 >gi|218295761|ref|ZP_03496557.1| NADH-quinone oxidoreductase, B subunit [Thermus aquaticus Y51MC23] gi|218243920|gb|EED10447.1| NADH-quinone oxidoreductase, B subunit [Thermus aquaticus Y51MC23] Length = 181 Score = 184 bits (467), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 85/154 (55%), Positives = 117/154 (75%), Gaps = 2/154 (1%) Query: 26 FSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA 85 F + E+ +G L T++++LV W R+ SL TFGLACCA+EMM ++ R DL RFG Sbjct: 7 FEKDVQELEREGILFTTLEKLVAWGRSNSLWPATFGLACCAIEMMASTDARNDLARFGSE 66 Query: 86 P-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR 144 RASPRQ+DVMIVAG L+ KMA +RRV++QMP+P++VISMG+CA+ GG ++ +Y++V+ Sbjct: 67 VFRASPRQADVMIVAGRLSKKMAPVMRRVWEQMPDPKWVISMGACASSGGMFN-NYAIVQ 125 Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 D +VPVD+YVPGCPP EALIY ++ LQKK+R Sbjct: 126 NVDSVVPVDVYVPGCPPRPEALIYAVMQLQKKVR 159 >gi|325104079|ref|YP_004273733.1| NADH dehydrogenase subunit B [Pedobacter saltans DSM 12145] gi|324972927|gb|ADY51911.1| NADH dehydrogenase subunit B [Pedobacter saltans DSM 12145] Length = 161 Score = 184 bits (467), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 82/152 (53%), Positives = 114/152 (75%), Gaps = 1/152 (0%) Query: 29 ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88 + ++ + G +VT +D L+ W+R SL ++FGLACCA+EMM + +D +R G PR Sbjct: 3 LEKQLENGGLIVTKLDDLLNWSRLSSLWPLSFGLACCAIEMMGSYSSNFDFDRLGVFPRP 62 Query: 89 SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCAN-GGGYYHYSYSVVRGCD 147 SPRQ+DV+I+AGT+T KMA ++R+Y+QMPEP+YVISMGSC+N GG Y+ + Y VV+G D Sbjct: 63 SPRQADVIIIAGTVTFKMAERIKRLYEQMPEPKYVISMGSCSNCGGPYWEHGYHVVKGVD 122 Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179 RI+PVD+YV GCPP EALI I+ LQ+KI + Sbjct: 123 RIIPVDVYVQGCPPRPEALIGAIIELQQKIEK 154 >gi|305666195|ref|YP_003862482.1| NADH-quinone oxidoreductase chain B [Maribacter sp. HTCC2170] gi|88707694|gb|EAQ99935.1| NADH-quinone oxidoreductase chain B [Maribacter sp. HTCC2170] Length = 185 Score = 184 bits (467), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 82/142 (57%), Positives = 112/142 (78%), Gaps = 2/142 (1%) Query: 39 LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APRASPRQSDVMI 97 +VTS+D+++ W R+ SL + FG +CCA+EMMQ R+D RFGF R SPRQ+D++I Sbjct: 26 IVTSLDKIINWGRSNSLWSLYFGTSCCAIEMMQTGAARHDYSRFGFEVARPSPRQADLII 85 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCA-NGGGYYHYSYSVVRGCDRIVPVDIYV 156 +AGT+ NKMA LRR+YDQM EPRYVI+MG+CA +GG +++ +YSVV+G D ++PVD+YV Sbjct: 86 IAGTIVNKMAPVLRRLYDQMAEPRYVIAMGACAISGGPFFYNTYSVVKGADHVIPVDVYV 145 Query: 157 PGCPPTAEALIYGILLLQKKIR 178 PGCPP EAL+ G+L+LQ KIR Sbjct: 146 PGCPPRPEALLEGMLMLQDKIR 167 >gi|222824437|ref|YP_002576011.1| NADH-quinone oxidoreductase, B subunit [Campylobacter lari RM2100] gi|222539658|gb|ACM64759.1| NADH-quinone oxidoreductase, B subunit [Campylobacter lari RM2100] Length = 165 Score = 184 bits (467), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 83/148 (56%), Positives = 114/148 (77%), Gaps = 1/148 (0%) Query: 32 EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPR 91 ++ + ++T+VD+LV W R+ SL +++GLACCA+EMM A RYD +RFG RASPR Sbjct: 6 KMNNAPVVLTTVDKLVQWGRSNSLWALSYGLACCAIEMMAAGGARYDFDRFGTIFRASPR 65 Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151 QS+VMI+AGTL+ K A RR+YDQMP+P++VISMGSCAN GG ++ +YS V+G DRI+P Sbjct: 66 QSEVMIIAGTLSKKHAEFTRRLYDQMPDPKWVISMGSCANTGGMFN-TYSTVQGVDRIIP 124 Query: 152 VDIYVPGCPPTAEALIYGILLLQKKIRR 179 VDIYVPGC P E + +++LQK+IR+ Sbjct: 125 VDIYVPGCAPRPETFQFALMILQKRIRK 152 >gi|15606518|ref|NP_213898.1| NADH dehydrogenase I chain B [Aquifex aeolicus VF5] gi|6647653|sp|O67334|NUOB_AQUAE RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|2983736|gb|AAC07297.1| NADH dehydrogenase I chain B [Aquifex aeolicus VF5] Length = 179 Score = 184 bits (467), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 83/152 (54%), Positives = 114/152 (75%), Gaps = 1/152 (0%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 I GF+ T+V++L+ W R SL +T GLACCA+EMM + R+DL+R G RASPRQ Sbjct: 4 INSNGFVTTTVEELLRWGRRNSLWPVTIGLACCAIEMMHTAASRFDLDRLGVIFRASPRQ 63 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 +DV+IVAGT+ NK+A L+ ++DQMP+P++ ISMG CA+ GG + +YS ++G DRI+PV Sbjct: 64 ADVLIVAGTVVNKVAPMLKLIWDQMPDPKWCISMGGCASAGGPFP-TYSTLQGVDRIIPV 122 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 D+Y+PGCPPT + LIYGIL LQ+KI+ G K Sbjct: 123 DVYIPGCPPTPQGLIYGILQLQRKIKEQGITK 154 >gi|224437358|ref|ZP_03658330.1| NADH dehydrogenase subunit B [Helicobacter cinaedi CCUG 18818] gi|313143821|ref|ZP_07806014.1| NADH dehydrogenase subunit B [Helicobacter cinaedi CCUG 18818] gi|313128852|gb|EFR46469.1| NADH dehydrogenase subunit B [Helicobacter cinaedi CCUG 18818] Length = 169 Score = 184 bits (466), Expect = 6e-45, Method: Compositional matrix adjust. Identities = 82/140 (58%), Positives = 112/140 (80%), Gaps = 1/140 (0%) Query: 40 VTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVA 99 ++SVD+L+ W R+ SL +T+GLACCA+EMM R+DL+RFG RASPRQ+D+MI++ Sbjct: 18 LSSVDKLLNWGRSNSLWGLTYGLACCAIEMMATGGSRFDLDRFGTIFRASPRQADLMIIS 77 Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGC 159 GT+T K A +RR+YDQMPEP++VISMGSCAN GG ++ +YS V+G DRI+PVDIY+PGC Sbjct: 78 GTVTKKHAEFVRRLYDQMPEPKWVISMGSCANTGGMFN-TYSTVQGVDRIIPVDIYLPGC 136 Query: 160 PPTAEALIYGILLLQKKIRR 179 P E L Y +++LQ+KIR+ Sbjct: 137 APRPETLQYAVMVLQQKIRK 156 >gi|251773166|gb|EES53719.1| NADH dehydrogenase (ubiquinone), B subunit [Leptospirillum ferrodiazotrophum] Length = 165 Score = 184 bits (466), Expect = 7e-45, Method: Compositional matrix adjust. Identities = 88/140 (62%), Positives = 110/140 (78%), Gaps = 2/140 (1%) Query: 39 LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMI 97 L +V+ +V W+R +L MTFGLACCA+EMM A R+D++RFG RASPRQSD+MI Sbjct: 18 LQDAVNDIVNWSRKSALWPMTFGLACCAIEMMGAVASRFDIDRFGAGVFRASPRQSDLMI 77 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGTLT KMA +R++YDQMPEPRYVI+MGSCA G Y SYSVV+G DR++PVD+YVP Sbjct: 78 VAGTLTRKMAPVVRKIYDQMPEPRYVIAMGSCATSGNIYD-SYSVVQGVDRLIPVDVYVP 136 Query: 158 GCPPTAEALIYGILLLQKKI 177 GCPP EAL+ G++ LQ+KI Sbjct: 137 GCPPRPEALLDGLIKLQEKI 156 >gi|315453251|ref|YP_004073521.1| NADH-quinone oxidoreductase subunit B [Helicobacter felis ATCC 49179] gi|315132303|emb|CBY82931.1| NADH-quinone oxidoreductase subunit B [Helicobacter felis ATCC 49179] Length = 169 Score = 184 bits (466), Expect = 7e-45, Method: Compositional matrix adjust. Identities = 83/140 (59%), Positives = 109/140 (77%), Gaps = 1/140 (0%) Query: 40 VTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVA 99 +T++D+L+ W R+ SL +T+GLACCA+EMM R+D +RFG RASPRQSDVMI+A Sbjct: 18 LTTLDKLLNWGRSNSLWPLTYGLACCAIEMMATGGSRFDFDRFGTIFRASPRQSDVMIIA 77 Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGC 159 GTLT K A RR+YDQMPEP++VISMGSCAN GG ++ +Y+ V+G DR++PVDIY+PGC Sbjct: 78 GTLTKKHAEFTRRLYDQMPEPKWVISMGSCANTGGMFN-TYATVQGVDRVIPVDIYLPGC 136 Query: 160 PPTAEALIYGILLLQKKIRR 179 P E L Y +++LQ KIRR Sbjct: 137 APRPETLQYALMVLQDKIRR 156 >gi|258592356|emb|CBE68665.1| NADH-quinone oxidoreductase subunit 6 (NADH dehydrogenase I chain 6) (NDH-1 subunit 6) [NC10 bacterium 'Dutch sediment'] Length = 181 Score = 183 bits (465), Expect = 8e-45, Method: Compositional matrix adjust. Identities = 85/146 (58%), Positives = 114/146 (78%), Gaps = 2/146 (1%) Query: 35 HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQS 93 +G L+T++D LV WAR S+ +FGLACCA+EMM R+DL RFG R SPRQS Sbjct: 20 ERGLLLTTLDSLVNWARKSSIWPASFGLACCAIEMMATGASRFDLARFGAEVFRGSPRQS 79 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD 153 D+MIVAG ++ KMA LRR+YDQMPEP++VI+MG+CA+ GG ++ +Y++V+G D+IVPVD Sbjct: 80 DLMIVAGRVSRKMAPVLRRIYDQMPEPKWVIAMGACASCGGIFN-TYTIVQGVDQIVPVD 138 Query: 154 IYVPGCPPTAEALIYGILLLQKKIRR 179 +YVPGCPP E LI+GI+LLQ+KI + Sbjct: 139 VYVPGCPPRPEQLIHGIMLLQEKIAK 164 >gi|152993807|ref|YP_001359528.1| NADH dehydrogenase subunit B [Sulfurovum sp. NBC37-1] gi|238065218|sp|A6QCG2|NUOB_SULNB RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|151425668|dbj|BAF73171.1| NADH-quinone oxidoreductase, chain B [Sulfurovum sp. NBC37-1] Length = 172 Score = 183 bits (465), Expect = 8e-45, Method: Compositional matrix adjust. Identities = 84/140 (60%), Positives = 109/140 (77%), Gaps = 1/140 (0%) Query: 40 VTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVA 99 +TSVD+LV W R+ SL +T+GLACCA+EMM + RYD +R G RASPRQ+DVMI+A Sbjct: 18 LTSVDKLVNWGRSNSLWPLTYGLACCAIEMMASGASRYDFDRMGTIFRASPRQADVMILA 77 Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGC 159 GTL+ K + RR+YDQM EP++VISMGSCAN GG ++ +Y+ V+G DRI+PVDIY+PGC Sbjct: 78 GTLSKKHSEFARRLYDQMTEPKWVISMGSCANTGGMFN-TYATVQGVDRIIPVDIYLPGC 136 Query: 160 PPTAEALIYGILLLQKKIRR 179 P E L Y +++LQKKIRR Sbjct: 137 APRPETLQYALMMLQKKIRR 156 >gi|57168317|ref|ZP_00367451.1| NADH2 dehydrogenase (ubiquinone) I chain B Cj1578c [Campylobacter coli RM2228] gi|153952278|ref|YP_001398860.1| NADH dehydrogenase subunit B [Campylobacter jejuni subsp. doylei 269.97] gi|157415794|ref|YP_001483050.1| NADH dehydrogenase subunit B [Campylobacter jejuni subsp. jejuni 81116] gi|305432374|ref|ZP_07401536.1| NADH-quinone oxidoreductase subunit B [Campylobacter coli JV20] gi|238055278|sp|A8FNN6|NUOB_CAMJ8 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|254767792|sp|A7H5T0|NUOB_CAMJD RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|57020125|gb|EAL56799.1| NADH2 dehydrogenase (ubiquinone) I chain B Cj1578c [Campylobacter coli RM2228] gi|152939724|gb|ABS44465.1| NADH-quinone oxidoreductase, B subunit [Campylobacter jejuni subsp. doylei 269.97] gi|157386758|gb|ABV53073.1| NADH dehydrogenase I chain B [Campylobacter jejuni subsp. jejuni 81116] gi|304444413|gb|EFM37064.1| NADH-quinone oxidoreductase subunit B [Campylobacter coli JV20] gi|307748433|gb|ADN91703.1| NADH-quinone oxidoreductase subunit B [Campylobacter jejuni subsp. jejuni M1] gi|315929523|gb|EFV08716.1| NADH-quinone oxidoreductase, B subunit [Campylobacter jejuni subsp. jejuni 305] gi|315931258|gb|EFV10228.1| NADH-quinone oxidoreductase, B subunit [Campylobacter jejuni subsp. jejuni 327] Length = 167 Score = 183 bits (465), Expect = 9e-45, Method: Compositional matrix adjust. Identities = 84/141 (59%), Positives = 110/141 (78%), Gaps = 1/141 (0%) Query: 39 LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIV 98 ++TSVD+LV W R+ SL +++GLACCA+EMM A RYD +RFG RASPR S+VMI+ Sbjct: 15 VLTSVDKLVQWGRSNSLWALSYGLACCAIEMMAAGGSRYDFDRFGTIFRASPRHSEVMII 74 Query: 99 AGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPG 158 AGTL K A RR+YDQMP+P++VISMGSCAN GG ++ +YS V+G DRI+PVDIYVPG Sbjct: 75 AGTLCKKHAEFTRRLYDQMPDPKWVISMGSCANTGGMFN-TYSTVQGVDRIIPVDIYVPG 133 Query: 159 CPPTAEALIYGILLLQKKIRR 179 C P E+ + +++LQKKIR+ Sbjct: 134 CAPRPESFQFALMILQKKIRK 154 >gi|57238591|ref|YP_179722.1| NADH dehydrogenase subunit B [Campylobacter jejuni RM1221] gi|148925724|ref|ZP_01809412.1| NADH dehydrogenase I chain B [Campylobacter jejuni subsp. jejuni CG8486] gi|205355593|ref|ZP_03222363.1| NADH dehydrogenase I chain B [Campylobacter jejuni subsp. jejuni CG8421] gi|81557394|sp|Q5HSL3|NUOB_CAMJR RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|57167395|gb|AAW36174.1| NADH-quinone oxidoreductase, B subunit [Campylobacter jejuni RM1221] gi|145845734|gb|EDK22825.1| NADH dehydrogenase I chain B [Campylobacter jejuni subsp. jejuni CG8486] gi|205346370|gb|EDZ33003.1| NADH dehydrogenase I chain B [Campylobacter jejuni subsp. jejuni CG8421] gi|315059028|gb|ADT73357.1| NADH-ubiquinone oxidoreductase chain B [Campylobacter jejuni subsp. jejuni S3] Length = 167 Score = 183 bits (465), Expect = 9e-45, Method: Compositional matrix adjust. Identities = 84/141 (59%), Positives = 110/141 (78%), Gaps = 1/141 (0%) Query: 39 LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIV 98 ++TSVD+LV W R+ SL +++GLACCA+EMM A RYD +RFG RASPR S+VMI+ Sbjct: 15 VLTSVDKLVQWGRSNSLWALSYGLACCAIEMMAAGGSRYDFDRFGTIFRASPRHSEVMII 74 Query: 99 AGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPG 158 AGTL K A RR+YDQMP+P++VISMGSCAN GG ++ +YS V+G DRI+PVDIYVPG Sbjct: 75 AGTLCKKHAEFTRRLYDQMPDPKWVISMGSCANTGGMFN-TYSTVQGVDRIIPVDIYVPG 133 Query: 159 CPPTAEALIYGILLLQKKIRR 179 C P E+ + +++LQKKIR+ Sbjct: 134 CAPRPESFQFALMILQKKIRK 154 >gi|86149321|ref|ZP_01067552.1| NADH-quinone oxidoreductase, B subunit [Campylobacter jejuni subsp. jejuni CF93-6] gi|86152325|ref|ZP_01070536.1| NADH-quinone oxidoreductase, B subunit [Campylobacter jejuni subsp. jejuni 260.94] gi|86152543|ref|ZP_01070748.1| nadh-quinone oxidoreductase chain 6 [Campylobacter jejuni subsp. jejuni HB93-13] gi|88596514|ref|ZP_01099751.1| NADH-quinone oxidoreductase, B subunit [Campylobacter jejuni subsp. jejuni 84-25] gi|121613264|ref|YP_001001218.1| NADH dehydrogenase subunit B [Campylobacter jejuni subsp. jejuni 81-176] gi|167006111|ref|ZP_02271869.1| NADH dehydrogenase subunit B [Campylobacter jejuni subsp. jejuni 81-176] gi|218563167|ref|YP_002344947.1| NADH dehydrogenase subunit B [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|283956950|ref|ZP_06374422.1| NADH dehydrogenase I chain B [Campylobacter jejuni subsp. jejuni 1336] gi|315124988|ref|YP_004066992.1| NADH dehydrogenase beta subunit [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|123336622|sp|Q0P850|NUOB_CAMJE RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|238055279|sp|A1W1H7|NUOB_CAMJJ RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|85840103|gb|EAQ57361.1| NADH-quinone oxidoreductase, B subunit [Campylobacter jejuni subsp. jejuni CF93-6] gi|85840814|gb|EAQ58065.1| NADH-quinone oxidoreductase, B subunit [Campylobacter jejuni subsp. jejuni 260.94] gi|85843428|gb|EAQ60638.1| nadh-quinone oxidoreductase chain 6 [Campylobacter jejuni subsp. jejuni HB93-13] gi|87249799|gb|EAQ72758.1| NADH-quinone oxidoreductase, B subunit [Campylobacter jejuni subsp. jejuni 81-176] gi|88191355|gb|EAQ95327.1| NADH-quinone oxidoreductase, B subunit [Campylobacter jejuni subsp. jejuni 84-25] gi|112360874|emb|CAL35675.1| NADH dehydrogenase I chain B [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|283791451|gb|EFC30248.1| NADH dehydrogenase I chain B [Campylobacter jejuni subsp. jejuni 1336] gi|284926773|gb|ADC29125.1| NADH dehydrogenase I chain B [Campylobacter jejuni subsp. jejuni IA3902] gi|315018710|gb|ADT66803.1| NADH dehydrogenase beta subunit [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|315927676|gb|EFV07007.1| NADH-quinone oxidoreductase, B subunit [Campylobacter jejuni subsp. jejuni DFVF1099] Length = 167 Score = 183 bits (465), Expect = 9e-45, Method: Compositional matrix adjust. Identities = 84/141 (59%), Positives = 110/141 (78%), Gaps = 1/141 (0%) Query: 39 LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIV 98 ++TSVD+LV W R+ SL +++GLACCA+EMM A RYD +RFG RASPR S+VMI+ Sbjct: 15 VLTSVDKLVQWGRSNSLWALSYGLACCAIEMMAAGGSRYDFDRFGTIFRASPRHSEVMII 74 Query: 99 AGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPG 158 AGTL K A RR+YDQMP+P++VISMGSCAN GG ++ +YS V+G DRI+PVDIYVPG Sbjct: 75 AGTLCKKHAEFTRRLYDQMPDPKWVISMGSCANTGGMFN-TYSTVQGVDRIIPVDIYVPG 133 Query: 159 CPPTAEALIYGILLLQKKIRR 179 C P E+ + +++LQKKIR+ Sbjct: 134 CAPRPESFQFALMILQKKIRK 154 >gi|91065096|gb|ABE03928.1| NuoB [Theonella swinhoei bacterial symbiont clone pSW1H8] Length = 178 Score = 183 bits (464), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 85/154 (55%), Positives = 116/154 (75%), Gaps = 2/154 (1%) Query: 26 FSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA 85 F R E+ G L +++ +LV W R+ SL TFGLACCA+EMMQ++ R DL RFG Sbjct: 7 FERDVQELETDGILFSTLGKLVAWGRSNSLWPATFGLACCAIEMMQSTNSRNDLARFGSE 66 Query: 86 P-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR 144 RASPRQ+DVMIVAG L+ KMA +RRVY+QMP+P++VISMG+CA+ GG ++ +Y++V+ Sbjct: 67 VFRASPRQADVMIVAGRLSKKMAPVMRRVYEQMPDPKWVISMGACASSGGMFN-NYAIVQ 125 Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 D +VPVDI+VPGCPP EAL+Y ++ LQK++R Sbjct: 126 NVDSVVPVDIFVPGCPPRPEALVYAVMQLQKRVR 159 >gi|313679586|ref|YP_004057325.1| NADH dehydrogenase subunit b [Oceanithermus profundus DSM 14977] gi|313152301|gb|ADR36152.1| NADH dehydrogenase subunit B [Oceanithermus profundus DSM 14977] Length = 179 Score = 183 bits (464), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 87/154 (56%), Positives = 116/154 (75%), Gaps = 2/154 (1%) Query: 26 FSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA 85 F R E+ +G L T++++LV W R+ SL +TFGLACCA+EMM +S R DL RFG Sbjct: 7 FERDVQELEREGILFTTLEKLVAWGRSNSLWPVTFGLACCAIEMMASSNARNDLSRFGSE 66 Query: 86 P-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR 144 RASPRQ+DVMIVAG L+ KMA +RRVYDQM +P++VI+MG+CA GG ++ +Y++V+ Sbjct: 67 VFRASPRQADVMIVAGRLSKKMAPVMRRVYDQMGDPKWVIAMGACAASGGMFN-NYAIVQ 125 Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 + +VPVD+YVPGCPP EALIY ++ LQKKIR Sbjct: 126 SVESVVPVDVYVPGCPPRPEALIYAVMQLQKKIR 159 >gi|190893214|ref|YP_001979756.1| NADH-ubiquinone oxidoreductase, chain B [Rhizobium etli CIAT 652] gi|238065034|sp|B3PY57|NUOB2_RHIE6 RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName: Full=NADH dehydrogenase I subunit B 2; AltName: Full=NDH-1 subunit B 2 gi|190698493|gb|ACE92578.1| NADH-ubiquinone oxidoreductase protein, chain B [Rhizobium etli CIAT 652] Length = 167 Score = 183 bits (464), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 83/141 (58%), Positives = 111/141 (78%), Gaps = 1/141 (0%) Query: 39 LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIV 98 L T+ D ++ W+R+ +L TFG+ACCA+EM+ A RYDL+RFG R SPRQSDVMI+ Sbjct: 13 LFTTADSIINWSRSSALWPETFGIACCAIEMISAGCARYDLDRFGVVFRPSPRQSDVMII 72 Query: 99 AGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPG 158 AGT+T K A +RR+YDQMPEPR+VI+MG+CA GG Y+ +Y+VV+G + VPVD++VPG Sbjct: 73 AGTVTRKFAPVVRRLYDQMPEPRWVIAMGTCAISGGVYN-TYAVVQGSETFVPVDVHVPG 131 Query: 159 CPPTAEALIYGILLLQKKIRR 179 CPP EAL++G LLLQ+KI+R Sbjct: 132 CPPRPEALMHGFLLLQEKIKR 152 >gi|296274502|ref|YP_003657133.1| NADH-quinone oxidoreductase subunit B [Arcobacter nitrofigilis DSM 7299] gi|296098676|gb|ADG94626.1| NADH-quinone oxidoreductase, B subunit [Arcobacter nitrofigilis DSM 7299] Length = 169 Score = 183 bits (464), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 82/140 (58%), Positives = 112/140 (80%), Gaps = 1/140 (0%) Query: 40 VTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVA 99 +++VD++V + R+ SL +T+GLACCA+EMM + RYD +RFG RASPRQ+DV+IVA Sbjct: 18 LSTVDKIVNFGRSNSLWPLTYGLACCAIEMMASGASRYDFDRFGTIFRASPRQADVLIVA 77 Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGC 159 GTLT K A +RR+YDQMP+P++VISMGSCAN GG ++ +Y+ V+G DR++PVDIY+PGC Sbjct: 78 GTLTKKHAEYMRRLYDQMPDPKWVISMGSCANTGGMFN-TYATVQGVDRVIPVDIYLPGC 136 Query: 160 PPTAEALIYGILLLQKKIRR 179 P E L Y +++LQKKIRR Sbjct: 137 APRPETLQYALMMLQKKIRR 156 >gi|322378681|ref|ZP_08053114.1| Donor-ubiquinone reductase I [Helicobacter suis HS1] gi|322380176|ref|ZP_08054411.1| NADH dehydrogenase subunit B [Helicobacter suis HS5] gi|321147391|gb|EFX42056.1| NADH dehydrogenase subunit B [Helicobacter suis HS5] gi|321148898|gb|EFX43365.1| Donor-ubiquinone reductase I [Helicobacter suis HS1] Length = 196 Score = 183 bits (464), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 83/140 (59%), Positives = 109/140 (77%), Gaps = 1/140 (0%) Query: 40 VTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVA 99 ++S+D+L+ W R+ SL +T+GLACCA+EMM R+D +RFG RASPRQSDVMI+A Sbjct: 45 LSSLDRLLNWGRSNSLWPLTYGLACCAIEMMATGGSRFDFDRFGTIFRASPRQSDVMIIA 104 Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGC 159 GTLT K A RR+YDQMPEP++VISMGSCAN GG ++ +Y+ V+G DR++PVDIY+PGC Sbjct: 105 GTLTKKHAEFTRRLYDQMPEPKWVISMGSCANTGGMFN-TYATVQGVDRVIPVDIYLPGC 163 Query: 160 PPTAEALIYGILLLQKKIRR 179 P E L Y +++LQ KIRR Sbjct: 164 APRPETLQYALMVLQDKIRR 183 >gi|197121687|ref|YP_002133638.1| NADH dehydrogenase subunit B [Anaeromyxobacter sp. K] gi|220916483|ref|YP_002491787.1| NADH-quinone oxidoreductase, B subunit [Anaeromyxobacter dehalogenans 2CP-1] gi|238065005|sp|B4UIA4|NUOB1_ANASK RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName: Full=NADH dehydrogenase I subunit B 1; AltName: Full=NDH-1 subunit B 1 gi|196171536|gb|ACG72509.1| NADH-quinone oxidoreductase, B subunit [Anaeromyxobacter sp. K] gi|219954337|gb|ACL64721.1| NADH-quinone oxidoreductase, B subunit [Anaeromyxobacter dehalogenans 2CP-1] Length = 173 Score = 183 bits (464), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 83/139 (59%), Positives = 104/139 (74%) Query: 40 VTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVA 99 + +D L+ AR SL ++TFGLACC +E+MQ PR D+ RFG PRASPRQ+D MIVA Sbjct: 18 TSQLDNLINLARASSLYYLTFGLACCGIELMQTGGPRADVMRFGAIPRASPRQADFMIVA 77 Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGC 159 GTLT KMA R +YDQMPEP+YVISMGSC+N GG + YSV +G D+++PVD+YVPGC Sbjct: 78 GTLTYKMAERARLLYDQMPEPKYVISMGSCSNCGGLFQLGYSVCKGVDKVIPVDVYVPGC 137 Query: 160 PPTAEALIYGILLLQKKIR 178 PP EAL G+L LQ+ +R Sbjct: 138 PPRPEALTEGLLRLQEIVR 156 >gi|307637933|gb|ADN80383.1| NADH-ubiquinone oxidoreductase chain B [Helicobacter pylori 908] Length = 159 Score = 182 bits (463), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 84/146 (57%), Positives = 112/146 (76%), Gaps = 1/146 (0%) Query: 39 LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIV 98 +++++D+L+ W R+ SL +T+GLA CA+EMM R+D +RFG RASPRQSDVMI+ Sbjct: 7 ILSTLDKLLNWGRSNSLWPLTYGLAWCAIEMMATGGSRFDFDRFGTIFRASPRQSDVMII 66 Query: 99 AGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPG 158 AGTLT K A +RR+YDQMPEP++VISMGSCAN GG ++ +Y+ V+G DRIVPVDIY+PG Sbjct: 67 AGTLTKKHAEFMRRLYDQMPEPKWVISMGSCANTGGMFN-TYATVQGADRIVPVDIYLPG 125 Query: 159 CPPTAEALIYGILLLQKKIRRVGNVK 184 C P E L Y +++LQ KIRR +K Sbjct: 126 CAPRPETLQYALMVLQDKIRRSKAIK 151 >gi|237751580|ref|ZP_04582060.1| NADH dehydrogenase subunit I B [Helicobacter bilis ATCC 43879] gi|229372946|gb|EEO23337.1| NADH dehydrogenase subunit I B [Helicobacter bilis ATCC 43879] Length = 169 Score = 182 bits (463), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 86/155 (55%), Positives = 115/155 (74%), Gaps = 3/155 (1%) Query: 32 EITHKGFLVT--SVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS 89 E++ +G V SVD+++ W R+ SL +T+GLACCA+EMM R+D +RFG RAS Sbjct: 8 ELSPRGMPVALGSVDKILNWGRSNSLWPLTYGLACCAIEMMATGGSRFDFDRFGIIFRAS 67 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQSDVMI+AGTLT K A RR+YDQMPEP++V+SMGSCAN GG ++ +Y+ V+G DRI Sbjct: 68 PRQSDVMIIAGTLTKKHAEFTRRLYDQMPEPKWVVSMGSCANTGGMFN-TYATVQGVDRI 126 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 +PVDIY+PGC P E L Y +++LQ+KIR +K Sbjct: 127 IPVDIYLPGCAPRPETLQYAMMVLQQKIRSEKAIK 161 >gi|327191021|gb|EGE58075.1| NADH-ubiquinone oxidoreductase protein, chain B [Rhizobium etli CNPAF512] Length = 167 Score = 182 bits (463), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 83/141 (58%), Positives = 111/141 (78%), Gaps = 1/141 (0%) Query: 39 LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIV 98 L T+ D ++ W+R+ +L TFG+ACCA+EM+ A RYDL+RFG R SPRQSDVMI+ Sbjct: 13 LFTTADSVINWSRSSALWPETFGIACCAIEMISAGCARYDLDRFGVVFRPSPRQSDVMII 72 Query: 99 AGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPG 158 AGT+T K A +RR+YDQMPEPR+VI+MG+CA GG Y+ +Y+VV+G + VPVD++VPG Sbjct: 73 AGTVTRKFAPVVRRLYDQMPEPRWVIAMGTCAISGGVYN-TYAVVQGSETFVPVDVHVPG 131 Query: 159 CPPTAEALIYGILLLQKKIRR 179 CPP EAL++G LLLQ+KI+R Sbjct: 132 CPPRPEALMHGFLLLQEKIKR 152 >gi|283953809|ref|ZP_06371340.1| NADH-quinone oxidoreductase, B subunit [Campylobacter jejuni subsp. jejuni 414] gi|283794850|gb|EFC33588.1| NADH-quinone oxidoreductase, B subunit [Campylobacter jejuni subsp. jejuni 414] Length = 167 Score = 182 bits (463), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 83/141 (58%), Positives = 110/141 (78%), Gaps = 1/141 (0%) Query: 39 LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIV 98 ++TSVD+LV W R+ SL +++GLACCA+EMM A RYD +RFG RASPR S+VMI+ Sbjct: 15 VLTSVDKLVQWGRSNSLWALSYGLACCAIEMMAAGGSRYDFDRFGTIFRASPRHSEVMII 74 Query: 99 AGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPG 158 AGTL K A RR+YDQMP+P++V+SMGSCAN GG ++ +YS V+G DRI+PVDIYVPG Sbjct: 75 AGTLCKKHAEFTRRLYDQMPDPKWVVSMGSCANTGGMFN-TYSTVQGVDRIIPVDIYVPG 133 Query: 159 CPPTAEALIYGILLLQKKIRR 179 C P E+ + +++LQKKIR+ Sbjct: 134 CAPRPESFQFALMILQKKIRK 154 >gi|302035622|ref|YP_003795944.1| NADH-quinone oxidoreductase subunit B [Candidatus Nitrospira defluvii] gi|300603686|emb|CBK40017.1| NADH-quinone oxidoreductase, subunit B [Candidatus Nitrospira defluvii] Length = 175 Score = 182 bits (463), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 89/140 (63%), Positives = 109/140 (77%), Gaps = 2/140 (1%) Query: 39 LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMI 97 + +V++ V WAR GSL MTFGLACCA+EM+ A RYD++R+G RASPRQSD+MI Sbjct: 18 ITLTVEKAVNWARKGSLWPMTFGLACCAIEMIAAVSSRYDMDRYGAGVFRASPRQSDLMI 77 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGT+ +MA +R++YDQMPEP+YVI+MGSCA G Y SYSVV+G DR VPVDIYVP Sbjct: 78 VAGTVCRRMAPVIRKIYDQMPEPKYVIAMGSCATSGNIYD-SYSVVQGVDRFVPVDIYVP 136 Query: 158 GCPPTAEALIYGILLLQKKI 177 GCPPT EAL GIL LQ++I Sbjct: 137 GCPPTPEALFDGILKLQERI 156 >gi|86359327|ref|YP_471219.1| NADH-ubiquinone oxidoreductase chain B protein [Rhizobium etli CFN 42] gi|123510666|sp|Q2K3U4|NUOB3_RHIEC RecName: Full=NADH-quinone oxidoreductase subunit B 3; AltName: Full=NADH dehydrogenase I subunit B 3; AltName: Full=NDH-1 subunit B 3 gi|86283429|gb|ABC92492.1| NADH-ubiquinone oxidoreductase chain B protein [Rhizobium etli CFN 42] Length = 167 Score = 182 bits (462), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 83/141 (58%), Positives = 111/141 (78%), Gaps = 1/141 (0%) Query: 39 LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIV 98 L T+ D ++ W+R+ +L TFG+ACCA+EM+ A RYDL+RFG R SPRQSDVMI+ Sbjct: 13 LFTTADSVINWSRSSALWPETFGIACCAIEMISAGCARYDLDRFGVVFRPSPRQSDVMII 72 Query: 99 AGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPG 158 AGT+T K A +RR+YDQMPEPR+VI+MG+CA GG Y+ +Y+VV+G + VPVD++VPG Sbjct: 73 AGTVTRKFAPVVRRLYDQMPEPRWVIAMGTCAISGGVYN-TYAVVQGSETFVPVDVHVPG 131 Query: 159 CPPTAEALIYGILLLQKKIRR 179 CPP EAL++G LLLQ+KI+R Sbjct: 132 CPPRPEALMHGFLLLQEKIKR 152 >gi|218460106|ref|ZP_03500197.1| NADH-ubiquinone oxidoreductase protein, chain B [Rhizobium etli Kim 5] Length = 167 Score = 182 bits (462), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 83/141 (58%), Positives = 111/141 (78%), Gaps = 1/141 (0%) Query: 39 LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIV 98 L T+ D +++W+R +L TFG+ACCA+EM+ A RYDL+RFG R SPRQSDVMI+ Sbjct: 13 LFTTADSIISWSRRSALWPETFGIACCAIEMISAGCARYDLDRFGVVFRPSPRQSDVMII 72 Query: 99 AGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPG 158 AGT+T K A +RR+YDQMPEPR+VI+MG+CA GG Y+ +Y+VV+G + VPVD++VPG Sbjct: 73 AGTVTRKFAPVVRRLYDQMPEPRWVIAMGTCAISGGVYN-TYAVVQGSETFVPVDVHVPG 131 Query: 159 CPPTAEALIYGILLLQKKIRR 179 CPP EAL++G LLLQ+KI+R Sbjct: 132 CPPRPEALMHGFLLLQEKIKR 152 >gi|313681394|ref|YP_004059132.1| NADH dehydrogenase subunit b [Sulfuricurvum kujiense DSM 16994] gi|313154254|gb|ADR32932.1| NADH dehydrogenase subunit B [Sulfuricurvum kujiense DSM 16994] Length = 169 Score = 182 bits (461), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 80/140 (57%), Positives = 110/140 (78%), Gaps = 1/140 (0%) Query: 40 VTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVA 99 +T++D++V W R+ SL +T+GLACC +EMM + RYD +RFG RASPRQ+++M+VA Sbjct: 18 LTTIDKVVNWGRSNSLWALTYGLACCGIEMMASGASRYDFDRFGTIFRASPRQAELMVVA 77 Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGC 159 GTLT K A +RR+YDQM EP++VISMGSCAN GG ++ +Y+ V+G DR++PVD+Y+PGC Sbjct: 78 GTLTKKHAEFIRRLYDQMTEPKWVISMGSCANTGGMFN-TYATVQGVDRVIPVDLYLPGC 136 Query: 160 PPTAEALIYGILLLQKKIRR 179 P E L Y +LLLQ+KIRR Sbjct: 137 APRPETLQYAVLLLQQKIRR 156 >gi|296122635|ref|YP_003630413.1| NADH-quinone oxidoreductase, subunit beta [Planctomyces limnophilus DSM 3776] gi|296014975|gb|ADG68214.1| NADH-quinone oxidoreductase, B subunit [Planctomyces limnophilus DSM 3776] Length = 225 Score = 181 bits (460), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 82/146 (56%), Positives = 114/146 (78%), Gaps = 2/146 (1%) Query: 35 HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APRASPRQS 93 + +VT+++Q + W + S+ +TFG+ACCA+EMM M +YDL+RFG A RA+PRQ+ Sbjct: 33 EENLIVTTLEQAMNWGQLSSVWPLTFGIACCAMEMMATGMSKYDLDRFGSGAFRATPRQA 92 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGG-YYHYSYSVVRGCDRIVPV 152 D+MIVAGT+T KMAS +RR+YDQMP+P+YVI+MG+C GGG Y+ Y Y VV+G D +VPV Sbjct: 93 DLMIVAGTVTYKMASRIRRLYDQMPDPKYVIAMGACTIGGGPYFKYGYHVVKGVDLVVPV 152 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIR 178 D+Y+PGCPP EAL+ G++ +Q KIR Sbjct: 153 DVYIPGCPPRPEALLEGVMRIQDKIR 178 >gi|297585416|ref|YP_003701196.1| NADH-quinone oxidoreductase subunit B [Bacillus selenitireducens MLS10] gi|297143873|gb|ADI00631.1| NADH-quinone oxidoreductase, B subunit [Bacillus selenitireducens MLS10] Length = 175 Score = 181 bits (459), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 86/147 (58%), Positives = 107/147 (72%) Query: 32 EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPR 91 E +K T VDQ+ W+RT S ++FGLACCA+EMM RYD +RFG RASPR Sbjct: 18 EDINKNVFFTKVDQIKAWSRTRSFWPLSFGLACCAIEMMATGGNRYDFDRFGVIFRASPR 77 Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151 +DVMIVAGT+T KMA LR +YDQMPEP++VI+MGSCA GG Y +YSV+ G D+IVP Sbjct: 78 HADVMIVAGTVTGKMAPVLRTLYDQMPEPKWVIAMGSCATCGGPYKEAYSVLNGVDKIVP 137 Query: 152 VDIYVPGCPPTAEALIYGILLLQKKIR 178 VD+YV GCPPT AL+ G+ L++KIR Sbjct: 138 VDVYVSGCPPTPPALLDGVERLREKIR 164 >gi|206889677|ref|YP_002248748.1| NADH-quinone oxidoreductase chain b 2 [Thermodesulfovibrio yellowstonii DSM 11347] gi|238065023|sp|B5YKI3|NUOB1_THEYD RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName: Full=NADH dehydrogenase I subunit B 1; AltName: Full=NDH-1 subunit B 1 gi|206741615|gb|ACI20672.1| NADH-quinone oxidoreductase chain b 2 [Thermodesulfovibrio yellowstonii DSM 11347] Length = 199 Score = 181 bits (459), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 81/140 (57%), Positives = 109/140 (77%), Gaps = 1/140 (0%) Query: 39 LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIV 98 ++T++D++ +W R SL +TFGLACCA+EMM + YDL+RFG RA+PRQ+DVMI+ Sbjct: 27 IITTLDKIASWGRCSSLWPLTFGLACCAIEMMATAASHYDLDRFGIIMRATPRQADVMII 86 Query: 99 AGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPG 158 AGT+T KMA + +Y QMPEPRYVI+MGSCA GG ++ +YS V+G D I+PVD+Y+PG Sbjct: 87 AGTVTKKMAPVIVNLYHQMPEPRYVIAMGSCACSGGIFN-TYSTVQGVDEILPVDVYIPG 145 Query: 159 CPPTAEALIYGILLLQKKIR 178 CPP EALI G+L LQ+KI+ Sbjct: 146 CPPRPEALIEGLLKLQEKIK 165 >gi|16263286|ref|NP_436079.1| NuoB2 NADH I chain B [Sinorhizobium meliloti 1021] gi|307304395|ref|ZP_07584146.1| NADH-quinone oxidoreductase, B subunit [Sinorhizobium meliloti BL225C] gi|307318102|ref|ZP_07597538.1| NADH-quinone oxidoreductase, B subunit [Sinorhizobium meliloti AK83] gi|17380450|sp|P56897|NUOB2_RHIME RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName: Full=NADH dehydrogenase I subunit B 2; AltName: Full=NDH-1 subunit B 2 gi|14523963|gb|AAK65491.1| NuoB2 NADH:quinone oxidoreductase (chain B) [Sinorhizobium meliloti 1021] gi|306896143|gb|EFN26893.1| NADH-quinone oxidoreductase, B subunit [Sinorhizobium meliloti AK83] gi|306902597|gb|EFN33191.1| NADH-quinone oxidoreductase, B subunit [Sinorhizobium meliloti BL225C] Length = 167 Score = 181 bits (459), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 82/141 (58%), Positives = 111/141 (78%), Gaps = 1/141 (0%) Query: 39 LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIV 98 L T+ D +++W+R +L TFG+ACCA+EM+ A RYDL+RFG R SPRQSDVMI+ Sbjct: 13 LFTTADSIISWSRRSALWPETFGIACCAIEMISAGCARYDLDRFGVVFRPSPRQSDVMII 72 Query: 99 AGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPG 158 AGT+T K A +RR+YDQMPEPR+VI+MG+CA GG Y+ +Y+VV+G + VPVD++VPG Sbjct: 73 AGTVTRKFAPVVRRLYDQMPEPRWVIAMGTCAISGGVYN-TYAVVQGSETFVPVDVHVPG 131 Query: 159 CPPTAEALIYGILLLQKKIRR 179 CPP EAL++G LLLQ+KI++ Sbjct: 132 CPPRPEALMHGFLLLQEKIKK 152 >gi|5650745|emb|CAB51630.1| putative NADH-ubiquinone oxidoreductase subunit [Sinorhizobium meliloti] Length = 167 Score = 181 bits (459), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 82/141 (58%), Positives = 111/141 (78%), Gaps = 1/141 (0%) Query: 39 LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIV 98 L T+ D +++W+R +L TFG+ACCA+EM+ A RYDL+RFG R SPRQSDVMI+ Sbjct: 13 LFTTADSIISWSRRSALWPETFGIACCAIEMISAGCARYDLDRFGVVFRPSPRQSDVMII 72 Query: 99 AGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPG 158 AGT+T K A +RR+YDQMPEPR+VI+MG+CA GG Y+ +Y+VV+G + VPVD++VPG Sbjct: 73 AGTVTRKFAPVVRRLYDQMPEPRWVIAMGTCAISGGVYN-TYAVVQGSETFVPVDVHVPG 131 Query: 159 CPPTAEALIYGILLLQKKIRR 179 CPP EAL++G LLLQ+KI++ Sbjct: 132 CPPRPEALMHGFLLLQEKIKK 152 >gi|161870822|ref|YP_001599995.1| NADH dehydrogenase I chain B [Neisseria meningitidis 053442] gi|161596375|gb|ABX74035.1| NADH dehydrogenase I chain B [Neisseria meningitidis 053442] Length = 124 Score = 181 bits (459), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 85/118 (72%), Positives = 98/118 (83%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 + KGF+ TS D ++ + RTGSL +TFGLACCAVEMM A M RYDL+RFG R SPRQ Sbjct: 6 VLKKGFITTSADTVLNYMRTGSLWPVTFGLACCAVEMMHAGMARYDLDRFGIIFRPSPRQ 65 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150 +D+MIV GTLTNKMA ALRRVYDQ+ EPR+V+SMGSCANGGGYYHYSYSVVRG DR+V Sbjct: 66 ADLMIVRGTLTNKMAPALRRVYDQLAEPRWVLSMGSCANGGGYYHYSYSVVRGADRVV 123 >gi|288803376|ref|ZP_06408809.1| NADH dehydrogenase I, B/C/D subunit protein [Prevotella melaninogenica D18] gi|288334196|gb|EFC72638.1| NADH dehydrogenase I, B/C/D subunit protein [Prevotella melaninogenica D18] Length = 308 Score = 181 bits (459), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 80/161 (49%), Positives = 115/161 (71%), Gaps = 3/161 (1%) Query: 21 KVDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78 K + S+++SE+ G ++ ++DQL+ W R+ SL +TF +CC +E M RYD Sbjct: 17 KDNDTLSKMASELNDGGTNLVLGNLDQLINWGRSNSLWSLTFATSCCGIEFMSVGCARYD 76 Query: 79 LERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137 RFGF R SPRQ+D+++ AGT+TNKMA AL+R+YDQM EP+YVI++G CA GG + Sbjct: 77 FSRFGFEVTRNSPRQADLIMCAGTITNKMAPALKRLYDQMAEPKYVIAVGGCAISGGPFK 136 Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 SY V+RG D I+PVD+Y+PGCPP EA+IYG++ LQ+K++ Sbjct: 137 DSYHVMRGIDEIIPVDVYIPGCPPRPEAIIYGMMQLQRKVK 177 >gi|317121592|ref|YP_004101595.1| NADH-quinone oxidoreductase subunit beta [Thermaerobacter marianensis DSM 12885] gi|315591572|gb|ADU50868.1| NADH-quinone oxidoreductase, B subunit [Thermaerobacter marianensis DSM 12885] Length = 350 Score = 181 bits (458), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 80/145 (55%), Positives = 108/145 (74%) Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVM 96 G L T + +LV W R S+ ++ FGLACCA+EMM A R DL+R G RASPRQ+D+M Sbjct: 201 GILTTRLQELVNWGRANSMWYLLFGLACCAIEMMAAGGTRTDLDRIGSVFRASPRQADLM 260 Query: 97 IVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV 156 IV+GT+T KMA ++ +YDQM EP++V+SMG+CA GG Y+ Y+VV G D+I+PVD+YV Sbjct: 261 IVSGTVTEKMAPVVKTLYDQMAEPKFVVSMGACATNGGPYYQGYNVVDGVDKIIPVDVYV 320 Query: 157 PGCPPTAEALIYGILLLQKKIRRVG 181 GCPP EAL++ IL LQ K+R++G Sbjct: 321 AGCPPRPEALVHAILKLQDKVRKIG 345 >gi|153004155|ref|YP_001378480.1| NADH dehydrogenase subunit B [Anaeromyxobacter sp. Fw109-5] gi|218527973|sp|A7H9V0|NUOB1_ANADF RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName: Full=NADH dehydrogenase I subunit B 1; AltName: Full=NDH-1 subunit B 1 gi|152027728|gb|ABS25496.1| NADH-quinone oxidoreductase, B subunit [Anaeromyxobacter sp. Fw109-5] Length = 172 Score = 181 bits (458), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 82/141 (58%), Positives = 105/141 (74%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 F + +D+L+ AR SL ++ FGLACC +E+MQ PR D+ RFG PRASPRQ+D MI Sbjct: 16 FHTSQLDKLINMARENSLWYLLFGLACCGIELMQFGGPRADVMRFGAIPRASPRQADFMI 75 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGTLT KMA + +YDQMPEP+YVISMGSC+N GG + YSV +G D+++PVD+YVP Sbjct: 76 VAGTLTYKMAERAKLLYDQMPEPKYVISMGSCSNCGGLFQLGYSVCKGVDKVIPVDVYVP 135 Query: 158 GCPPTAEALIYGILLLQKKIR 178 GCPP EAL G++ LQ+ IR Sbjct: 136 GCPPRPEALTEGLIRLQELIR 156 >gi|315638063|ref|ZP_07893248.1| NADH-quinone oxidoreductase subunit B [Campylobacter upsaliensis JV21] gi|315481911|gb|EFU72530.1| NADH-quinone oxidoreductase subunit B [Campylobacter upsaliensis JV21] Length = 167 Score = 181 bits (458), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 83/141 (58%), Positives = 109/141 (77%), Gaps = 1/141 (0%) Query: 39 LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIV 98 ++TSVD+LV W R+ SL +++GLACCA+EMM A RYD +RFG RASPR S+VMI+ Sbjct: 15 ILTSVDKLVQWGRSNSLWALSYGLACCAIEMMAAGGSRYDFDRFGTIFRASPRHSEVMII 74 Query: 99 AGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPG 158 AGTL K A RR+YD MP+P++VISMGSCAN GG ++ +YS V+G DRI+PVDIYVPG Sbjct: 75 AGTLCKKHAEFTRRLYDMMPDPKWVISMGSCANTGGMFN-TYSTVQGVDRIIPVDIYVPG 133 Query: 159 CPPTAEALIYGILLLQKKIRR 179 C P E+ + +++LQKKIR+ Sbjct: 134 CAPRPESFQFALMILQKKIRK 154 >gi|302345400|ref|YP_003813753.1| NADH-quinone oxidoreductase, B subunit [Prevotella melaninogenica ATCC 25845] gi|302149419|gb|ADK95681.1| NADH-quinone oxidoreductase, B subunit [Prevotella melaninogenica ATCC 25845] Length = 305 Score = 181 bits (458), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 80/161 (49%), Positives = 115/161 (71%), Gaps = 3/161 (1%) Query: 21 KVDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78 K + S+++SE+ G ++ ++DQL+ W R+ SL +TF +CC +E M RYD Sbjct: 17 KDNDTLSKMASELNDGGTNLVLGNLDQLINWGRSNSLWSLTFATSCCGIEFMSVGCARYD 76 Query: 79 LERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137 RFGF R SPRQ+D+++ AGT+TNKMA AL+R+YDQM EP+YVI++G CA GG + Sbjct: 77 FSRFGFEVTRNSPRQADLIMCAGTITNKMAPALKRLYDQMAEPKYVIAVGGCAISGGPFK 136 Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 SY V+RG D I+PVD+Y+PGCPP EA+IYG++ LQ+K++ Sbjct: 137 DSYHVMRGIDEIIPVDVYIPGCPPRPEAIIYGMMQLQRKVK 177 >gi|57505815|ref|ZP_00371740.1| NADH2 dehydrogenase (ubiquinone) I chain B Cj1578c [Campylobacter upsaliensis RM3195] gi|57015845|gb|EAL52634.1| NADH2 dehydrogenase (ubiquinone) I chain B Cj1578c [Campylobacter upsaliensis RM3195] Length = 167 Score = 180 bits (457), Expect = 7e-44, Method: Compositional matrix adjust. Identities = 83/141 (58%), Positives = 109/141 (77%), Gaps = 1/141 (0%) Query: 39 LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIV 98 ++TSVD+LV W R+ SL +++GLACCA+EMM A RYD +RFG RASPR S+VMI+ Sbjct: 15 VLTSVDKLVQWGRSNSLWALSYGLACCAIEMMAAGGSRYDFDRFGTIFRASPRHSEVMII 74 Query: 99 AGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPG 158 AGTL K A RR+YD MP+P++VISMGSCAN GG ++ +YS V+G DRI+PVDIYVPG Sbjct: 75 AGTLCKKHAEFTRRLYDMMPDPKWVISMGSCANTGGMFN-TYSTVQGVDRIIPVDIYVPG 133 Query: 159 CPPTAEALIYGILLLQKKIRR 179 C P E+ + +++LQKKIR+ Sbjct: 134 CAPRPESFQFALMILQKKIRK 154 >gi|291280356|ref|YP_003497191.1| NADH-quinone oxidoreductase subunit B [Deferribacter desulfuricans SSM1] gi|290755058|dbj|BAI81435.1| NADH-quinone oxidoreductase, B subunit [Deferribacter desulfuricans SSM1] Length = 158 Score = 180 bits (457), Expect = 7e-44, Method: Compositional matrix adjust. Identities = 83/150 (55%), Positives = 111/150 (74%), Gaps = 4/150 (2%) Query: 33 ITHK---GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS 89 I HK + ++D ++ WAR S+ +TFGLACCA+EMM A +YDL+R G RA+ Sbjct: 4 IEHKFSDNIITATIDGVINWARKSSIWPVTFGLACCAIEMMAAGASKYDLDRLGVIFRAT 63 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQ+D+MIVAGT+T KMA +R+VYDQMPEP++VI+MGSCA GG ++ +YS V+G D I Sbjct: 64 PRQADLMIVAGTVTRKMAPVVRKVYDQMPEPKWVIAMGSCATSGGIFN-TYSTVQGVDEI 122 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRR 179 VPVD Y+PGCPP EAL+ I+ LQ+KI+ Sbjct: 123 VPVDFYIPGCPPRPEALLDAIVALQEKIKH 152 >gi|313903494|ref|ZP_07836885.1| NADH dehydrogenase subunit B [Thermaerobacter subterraneus DSM 13965] gi|313466315|gb|EFR61838.1| NADH dehydrogenase subunit B [Thermaerobacter subterraneus DSM 13965] Length = 193 Score = 180 bits (457), Expect = 7e-44, Method: Compositional matrix adjust. Identities = 83/143 (58%), Positives = 106/143 (74%) Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVM 96 G + T++ LV W R SL ++ FG+ACCA+EMM A R DL+R G RASPRQ+D+M Sbjct: 46 GVITTNLQTLVNWGRKNSLWYLLFGIACCAIEMMAAGASRIDLDRLGSVFRASPRQADMM 105 Query: 97 IVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV 156 IVAGT+T KMA ++ +YDQM EPRYVI+MG+CA+ GG Y+ Y+VV G D+IVPVD+YV Sbjct: 106 IVAGTVTEKMAPVIKTLYDQMAEPRYVIAMGACASNGGPYYQGYNVVDGVDKIVPVDVYV 165 Query: 157 PGCPPTAEALIYGILLLQKKIRR 179 GCPP EALIY I+ LQ K+ R Sbjct: 166 AGCPPRPEALIYAIMKLQDKVAR 188 >gi|283782292|ref|YP_003373047.1| NADH-quinone oxidoreductase, B subunit [Pirellula staleyi DSM 6068] gi|283440745|gb|ADB19187.1| NADH-quinone oxidoreductase, B subunit [Pirellula staleyi DSM 6068] Length = 227 Score = 180 bits (457), Expect = 7e-44, Method: Compositional matrix adjust. Identities = 82/146 (56%), Positives = 112/146 (76%), Gaps = 2/146 (1%) Query: 35 HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APRASPRQS 93 + TSV+Q + WAR S+ MTFGLACCA+EMM A RYD++RFG A RA+PRQ+ Sbjct: 31 EENVFTTSVEQAINWARQSSIWPMTFGLACCAIEMMAAGASRYDMDRFGAGAFRATPRQA 90 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGG-YYHYSYSVVRGCDRIVPV 152 D+MIVAGT+T KMAS +RR+Y+ MP+P++VI+MG+C GGG Y+ + Y VV+G D +VPV Sbjct: 91 DLMIVAGTVTYKMASRVRRLYNMMPDPKFVIAMGACTVGGGPYFKWGYHVVKGVDLVVPV 150 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIR 178 D+Y+PGCPP EAL+ G++ +Q KI+ Sbjct: 151 DVYIPGCPPRPEALLEGLMRIQDKIK 176 >gi|319955917|ref|YP_004167180.1| NADH dehydrogenase subunit b [Nitratifractor salsuginis DSM 16511] gi|319418321|gb|ADV45431.1| NADH dehydrogenase subunit B [Nitratifractor salsuginis DSM 16511] Length = 170 Score = 180 bits (457), Expect = 8e-44, Method: Compositional matrix adjust. Identities = 82/140 (58%), Positives = 109/140 (77%), Gaps = 1/140 (0%) Query: 40 VTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVA 99 +T+VD+L+ W R+ SL +T+GLACCA+EMM + R+D +R G RASPRQ+DVMI+A Sbjct: 18 LTTVDKLLNWGRSNSLWPLTYGLACCAIEMMASGASRFDFDRMGVIFRASPRQADVMILA 77 Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGC 159 GTL+ K A RR+YDQM EP++VISMGSCAN GG ++ +Y+ V+G DRI+PVDIY+PGC Sbjct: 78 GTLSKKHAEFARRLYDQMAEPKWVISMGSCANTGGMFN-TYATVQGVDRIIPVDIYLPGC 136 Query: 160 PPTAEALIYGILLLQKKIRR 179 P E L Y +++LQKKIRR Sbjct: 137 APRPETLQYAMMMLQKKIRR 156 >gi|284106847|ref|ZP_06386290.1| NADH-quinone oxidoreductase, B subunit [Candidatus Poribacteria sp. WGA-A3] gi|283830026|gb|EFC34302.1| NADH-quinone oxidoreductase, B subunit [Candidatus Poribacteria sp. WGA-A3] Length = 159 Score = 180 bits (456), Expect = 9e-44, Method: Compositional matrix adjust. Identities = 87/144 (60%), Positives = 111/144 (77%), Gaps = 2/144 (1%) Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95 + T++D LV+W R +L MTFGLACCA+EM+ + RYD++RFG RASPRQSDV Sbjct: 11 NIITTNLDYLVSWCRKSALWPMTFGLACCAIEMIASVSSRYDIDRFGAGVFRASPRQSDV 70 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155 MIVAGT+ KMA +RR+YDQM EPRYVISMGSCA G +Y+ SYSVV+G D+IVPVD+Y Sbjct: 71 MIVAGTVCRKMAPVIRRIYDQMAEPRYVISMGSCATSGNHYN-SYSVVQGVDQIVPVDVY 129 Query: 156 VPGCPPTAEALIYGILLLQKKIRR 179 V GCPP EAL+ ++ LQ+KI++ Sbjct: 130 VAGCPPRPEALLDALIKLQEKIQK 153 >gi|256380664|ref|YP_003104324.1| NADH dehydrogenase subunit B [Actinosynnema mirum DSM 43827] gi|255924967|gb|ACU40478.1| NADH-quinone oxidoreductase, B subunit [Actinosynnema mirum DSM 43827] Length = 182 Score = 180 bits (456), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 87/148 (58%), Positives = 108/148 (72%), Gaps = 2/148 (1%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RAS 89 E G L+ SV++LV W R SL TFGLACCA+EMM PRYDL RFG RAS Sbjct: 4 EEKLPNGVLLVSVEKLVNWTRKSSLWPATFGLACCAIEMMTTGAPRYDLARFGMEVFRAS 63 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQ+D+MIVAG +TNKMA LR++YDQMPEPR+V++MG CA+ GG ++ +Y+VV+G D I Sbjct: 64 PRQADLMIVAGRVTNKMAPVLRQIYDQMPEPRWVLAMGVCASSGGMFN-NYAVVQGVDHI 122 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKI 177 VPVD+Y+PGCPP E LI IL + KI Sbjct: 123 VPVDMYLPGCPPRPEMLIDAILKIHAKI 150 >gi|227822752|ref|YP_002826724.1| NADH dehydrogenase subunit B [Sinorhizobium fredii NGR234] gi|227341753|gb|ACP25971.1| NADH dehydrogenase I chain B1 [Sinorhizobium fredii NGR234] Length = 167 Score = 180 bits (456), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 82/141 (58%), Positives = 110/141 (78%), Gaps = 1/141 (0%) Query: 39 LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIV 98 L T+ D +++W+R +L TFG+ACCA+EM+ A RYDL+RFG R SPRQSDVMI+ Sbjct: 13 LFTTADSVISWSRRSALWPETFGIACCAIEMISAGCARYDLDRFGVVFRPSPRQSDVMII 72 Query: 99 AGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPG 158 AGT+T K A +RR+YDQMPEPR+VI+MG+CA GG Y+ +Y+VV+G VPVD++VPG Sbjct: 73 AGTVTRKFAPVVRRLYDQMPEPRWVIAMGTCAISGGVYN-TYAVVQGAQTFVPVDVHVPG 131 Query: 159 CPPTAEALIYGILLLQKKIRR 179 CPP EAL++G LLLQ+KI++ Sbjct: 132 CPPRPEALMHGFLLLQEKIKK 152 >gi|108804469|ref|YP_644406.1| NADH-quinone oxidoreductase subunit B [Rubrobacter xylanophilus DSM 9941] gi|123069071|sp|Q1AVI4|NUOB_RUBXD RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|108765712|gb|ABG04594.1| NADH-quinone oxidoreductase, B subunit [Rubrobacter xylanophilus DSM 9941] Length = 251 Score = 179 bits (455), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 86/158 (54%), Positives = 110/158 (69%), Gaps = 5/158 (3%) Query: 29 ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFG---FA 85 + + + TS D+L WAR SL + FGLACCA+EMM M DLERFG FA Sbjct: 3 LMQKFDEPNIITTSTDKLFNWARKNSLWPLQFGLACCAIEMMSTGMAHNDLERFGAGFFA 62 Query: 86 PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRG 145 SPRQ+DVMIV+GT++ KMA + R+Y+QMPEP++VI+MG+CA GG + YSV+ G Sbjct: 63 --GSPRQADVMIVSGTVSTKMAERMTRLYEQMPEPKWVIAMGACAISGGPFLDGYSVLMG 120 Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 DR++PVD+YVPGCPP EALI+GI+ LQKKI R V Sbjct: 121 ADRVIPVDVYVPGCPPRPEALIFGIMTLQKKIEREQQV 158 >gi|313672278|ref|YP_004050389.1| NADH dehydrogenase subunit b [Calditerrivibrio nitroreducens DSM 19672] gi|312939034|gb|ADR18226.1| NADH dehydrogenase subunit B [Calditerrivibrio nitroreducens DSM 19672] Length = 158 Score = 179 bits (455), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 82/141 (58%), Positives = 108/141 (76%), Gaps = 1/141 (0%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 + T+VD ++ WAR SL +TFGLACCA+EMM +YDL+R G RA+PRQ+D+MI Sbjct: 12 IITTTVDGVINWARRSSLWPVTFGLACCAIEMMAVGASKYDLDRLGVIFRATPRQADLMI 71 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGT+T KMA +R+VYDQMPEP++VI+MGSCA GG ++ +YS V+G D IVPVD Y+P Sbjct: 72 VAGTVTRKMAPVVRKVYDQMPEPKWVIAMGSCATSGGIFN-TYSTVQGVDEIVPVDFYIP 130 Query: 158 GCPPTAEALIYGILLLQKKIR 178 GCPP EAL+ I+ LQ+KI+ Sbjct: 131 GCPPRPEALLDAIVALQEKIK 151 >gi|163783891|ref|ZP_02178866.1| NADH dehydrogenase I chain B [Hydrogenivirga sp. 128-5-R1-1] gi|159880835|gb|EDP74364.1| NADH dehydrogenase I chain B [Hydrogenivirga sp. 128-5-R1-1] Length = 172 Score = 179 bits (455), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 78/146 (53%), Positives = 113/146 (77%), Gaps = 1/146 (0%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 + + G ++T+ +++++W R SL ++ GLACCA+EMM + R+D +R G R SPRQ Sbjct: 4 MNNNGIILTTAEEVLSWGRRNSLWPVSIGLACCAIEMMHTAASRFDTDRLGIIFRGSPRQ 63 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 SDV+IVAGT+ NK+A L+ +YDQMP+P++VISMG CA+ GG + +YS ++G DRI+PV Sbjct: 64 SDVLIVAGTVVNKVAPMLKLIYDQMPDPKWVISMGGCASAGGPFP-TYSTLQGVDRIIPV 122 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIR 178 D+YVPGCPPT +AL++GIL LQKKI+ Sbjct: 123 DVYVPGCPPTPQALLWGILELQKKIK 148 >gi|317121157|ref|YP_004101160.1| NADH dehydrogenase subunit B [Thermaerobacter marianensis DSM 12885] gi|315591137|gb|ADU50433.1| NADH dehydrogenase subunit B [Thermaerobacter marianensis DSM 12885] Length = 193 Score = 179 bits (455), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 82/143 (57%), Positives = 106/143 (74%) Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVM 96 G + T++ LV W R SL ++ FG+ACCA+EMM A R DL+R G RASPRQ+D+M Sbjct: 46 GVITTNLQTLVNWGRKNSLWYLLFGIACCAIEMMAAGASRIDLDRLGSVFRASPRQADLM 105 Query: 97 IVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV 156 IVAGT+T KMA ++ +YDQM EP+YVI+MG+CA+ GG Y+ Y+VV G D+IVPVD+YV Sbjct: 106 IVAGTVTEKMAPVIKTLYDQMAEPKYVIAMGACASNGGPYYQGYNVVDGVDKIVPVDVYV 165 Query: 157 PGCPPTAEALIYGILLLQKKIRR 179 GCPP EALIY I+ LQ K+ R Sbjct: 166 AGCPPRPEALIYAIMKLQDKVAR 188 >gi|149909804|ref|ZP_01898455.1| NuoB2 NADH I CHAIN B [Moritella sp. PE36] gi|149807136|gb|EDM67092.1| NuoB2 NADH I CHAIN B [Moritella sp. PE36] Length = 181 Score = 179 bits (455), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 83/147 (56%), Positives = 111/147 (75%), Gaps = 1/147 (0%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP 90 +E L T+ D ++ W+R SL TFG+ACCA+EM+ A RYDL+RFG R+SP Sbjct: 5 TERYKDNVLFTTSDSIINWSRKSSLWPETFGIACCAIEMIAAGCARYDLDRFGVVFRSSP 64 Query: 91 RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150 RQSDVMI+AGT+T KMA +RR+YDQMPEPRYVI+MG+CA GG Y+ +YSVV+G D V Sbjct: 65 RQSDVMIIAGTVTKKMAPIIRRLYDQMPEPRYVIAMGTCAISGGVYN-TYSVVQGSDLFV 123 Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKI 177 PVD++V GCPP +AL++ ++LLQ++I Sbjct: 124 PVDVHVAGCPPRPDALLHAMVLLQQQI 150 >gi|260592325|ref|ZP_05857783.1| NADH dehydrogenase I, B subunit [Prevotella veroralis F0319] gi|260535712|gb|EEX18329.1| NADH dehydrogenase I, B subunit [Prevotella veroralis F0319] Length = 295 Score = 179 bits (454), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 79/161 (49%), Positives = 115/161 (71%), Gaps = 3/161 (1%) Query: 21 KVDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78 K + S+++SE+ G ++ ++DQL+ W R+ SL +TF +CC +E M RYD Sbjct: 17 KDNDTLSKMASELNDGGTNLVLGNLDQLINWGRSNSLWSLTFATSCCGIEFMAVGCARYD 76 Query: 79 LERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137 RFGF R SPRQ+D+++ AGT+TNKMA AL+R+YD+M EP+YVI++G CA GG + Sbjct: 77 FSRFGFEVTRNSPRQADLIMCAGTITNKMAPALKRLYDEMAEPKYVIAVGGCAISGGPFK 136 Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 SY V+RG D I+PVD+Y+PGCPP EA+IYG++ LQ+K++ Sbjct: 137 DSYHVMRGIDEIIPVDVYIPGCPPRPEAIIYGMMQLQRKVK 177 >gi|320353962|ref|YP_004195301.1| NADH dehydrogenase subunit B [Desulfobulbus propionicus DSM 2032] gi|320122464|gb|ADW18010.1| NADH dehydrogenase subunit B [Desulfobulbus propionicus DSM 2032] Length = 173 Score = 179 bits (453), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 84/141 (59%), Positives = 108/141 (76%), Gaps = 1/141 (0%) Query: 39 LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIV 98 ++ +++LV W R GS+ +TFGLACCA+EMM A DL+RFG RASPRQ+D M+V Sbjct: 25 ILGPLNKLVNWGRAGSIWPVTFGLACCAIEMMDAGASTNDLDRFGILFRASPRQADCMVV 84 Query: 99 AGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPG 158 AGTL+ KMA LRRVYDQMPEPRYV++MGSCA GG + +Y+V +G D+I+PVD+YVPG Sbjct: 85 AGTLSKKMAPVLRRVYDQMPEPRYVLAMGSCACSGGVFD-TYAVTQGVDQIIPVDVYVPG 143 Query: 159 CPPTAEALIYGILLLQKKIRR 179 CPP EAL+ G L LQ+KI + Sbjct: 144 CPPRPEALLEGFLKLQEKILK 164 >gi|288818716|ref|YP_003433064.1| NADH dehydrogenase chain B [Hydrogenobacter thermophilus TK-6] gi|288788116|dbj|BAI69863.1| NADH dehydrogenase chain B [Hydrogenobacter thermophilus TK-6] gi|308752303|gb|ADO45786.1| NADH-quinone oxidoreductase, B subunit [Hydrogenobacter thermophilus TK-6] Length = 179 Score = 179 bits (453), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 78/149 (52%), Positives = 113/149 (75%), Gaps = 1/149 (0%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 + GF++T+VD+L+ W R +L +T GLACCA+EMM + R+DL+R G RASPRQ Sbjct: 4 LNSNGFVITTVDELLRWGRRNALWPVTIGLACCAIEMMHTAASRFDLDRLGVIFRASPRQ 63 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 +DV+IVAGT+ NK+A L+ +++QMP+P++ I+MG CA+ GG + +Y+ ++G DRI+PV Sbjct: 64 ADVLIVAGTVVNKVAPMLKLIWEQMPDPKWCITMGGCASAGGPFP-TYATLQGMDRIIPV 122 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVG 181 D+Y+PGCPP + LIYGIL LQKKI+ G Sbjct: 123 DVYIPGCPPHPQGLIYGILQLQKKIKEKG 151 >gi|325003723|ref|ZP_08124835.1| NADH dehydrogenase subunit B [Pseudonocardia sp. P1] Length = 235 Score = 179 bits (453), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 84/148 (56%), Positives = 109/148 (73%), Gaps = 2/148 (1%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RAS 89 E G L+T+V++LV W R SL TFGLACCA+EMM PRYDL RFG RAS Sbjct: 4 EENLPSGVLLTNVEKLVNWTRKSSLWPATFGLACCAIEMMTTGAPRYDLARFGMEVFRAS 63 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQ+D+MIVAG ++NKMA LR++YDQMPEPR+V++MG CA+ GG ++ +Y++V+G D + Sbjct: 64 PRQADLMIVAGRVSNKMAPVLRQIYDQMPEPRWVLAMGVCASSGGMFN-NYAIVQGVDHV 122 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKI 177 VPVD+Y+PGCPP E LI IL + KI Sbjct: 123 VPVDMYLPGCPPRPEMLIDAILKIHAKI 150 >gi|150375773|ref|YP_001312369.1| NADH dehydrogenase subunit B [Sinorhizobium medicae WSM419] gi|150030320|gb|ABR62436.1| NADH-quinone oxidoreductase, B subunit [Sinorhizobium medicae WSM419] Length = 167 Score = 179 bits (453), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 81/140 (57%), Positives = 110/140 (78%), Gaps = 1/140 (0%) Query: 39 LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIV 98 L T+ + +++W+R +L TFG+ACCA+EM+ A RYDL+RFG R SPRQSDVMI+ Sbjct: 13 LFTTAESIISWSRRSALWPETFGIACCAIEMISAGCARYDLDRFGVVFRPSPRQSDVMII 72 Query: 99 AGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPG 158 AGT+T K A +RR+YDQMPEPR+VI+MG+CA GG Y+ +Y+VV+G + VPVD++VPG Sbjct: 73 AGTVTRKFAPVVRRLYDQMPEPRWVIAMGTCAISGGVYN-TYAVVQGSETFVPVDVHVPG 131 Query: 159 CPPTAEALIYGILLLQKKIR 178 CPP EAL++G LLLQ+KI+ Sbjct: 132 CPPRPEALMHGFLLLQEKIK 151 >gi|325269277|ref|ZP_08135895.1| NADH dehydrogenase I subunit B [Prevotella multiformis DSM 16608] gi|324988404|gb|EGC20369.1| NADH dehydrogenase I subunit B [Prevotella multiformis DSM 16608] Length = 297 Score = 178 bits (452), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 78/161 (48%), Positives = 115/161 (71%), Gaps = 3/161 (1%) Query: 21 KVDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78 K + S+++SE+ G ++ ++DQL+ W R+ SL +TF +CC +E M RYD Sbjct: 17 KDNDTLSKMASELNDGGTNLVLGNLDQLINWGRSNSLWSLTFATSCCGIEFMAVGCARYD 76 Query: 79 LERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137 RFGF R SPRQ+D+++ AGT+TNKMA AL+R+YD+M EP+YVI++G CA GG + Sbjct: 77 FSRFGFEVTRNSPRQADLIMCAGTITNKMAPALKRLYDEMAEPKYVIAVGGCAISGGPFK 136 Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 SY V+RG D I+PVD+Y+PGCPP EA++YG++ LQ+K++ Sbjct: 137 DSYHVMRGIDEIIPVDVYIPGCPPRPEAIVYGMMQLQRKVK 177 >gi|289548152|ref|YP_003473140.1| NADH-quinone oxidoreductase subunit beta [Thermocrinis albus DSM 14484] gi|289181769|gb|ADC89013.1| NADH-quinone oxidoreductase, B subunit [Thermocrinis albus DSM 14484] Length = 178 Score = 178 bits (452), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 77/149 (51%), Positives = 116/149 (77%), Gaps = 1/149 (0%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 + GF++T+V++L++W+R +L +T GLACCA+EMM A+ R+DL+R G RASPRQ Sbjct: 4 LNSNGFVLTTVEELLSWSRRNALWPVTIGLACCAIEMMHAAASRFDLDRLGVIFRASPRQ 63 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 +D++IVAGT+ NK+A L+ +++QMP+P++ I+MG CA+ GG + +YS ++G DRI+PV Sbjct: 64 ADLLIVAGTVVNKVAPMLKLIWEQMPDPKWCITMGGCASAGGPFP-TYSTLQGMDRIIPV 122 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVG 181 D+Y+PGCPP + L+YGIL LQKKI+ G Sbjct: 123 DVYIPGCPPHPQGLLYGILQLQKKIKEQG 151 >gi|87311558|ref|ZP_01093676.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit [Blastopirellula marina DSM 3645] gi|87285680|gb|EAQ77596.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit [Blastopirellula marina DSM 3645] Length = 198 Score = 178 bits (452), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 83/146 (56%), Positives = 113/146 (77%), Gaps = 2/146 (1%) Query: 35 HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APRASPRQS 93 + + T+++Q + WA+ S+ MTFGLACCA+EMM A RYDL+RFG A RA+PRQ+ Sbjct: 11 EENVVFTTLEQAINWAQQSSIWPMTFGLACCAIEMMAAGASRYDLDRFGAGAFRATPRQA 70 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGG-YYHYSYSVVRGCDRIVPV 152 D+MIVAGT+T KMAS +RR+Y+ MP+P+YVI+MG+C GGG Y+ Y Y VV+G D +VPV Sbjct: 71 DLMIVAGTVTYKMASRVRRLYNMMPDPKYVIAMGACTVGGGPYFKYGYHVVKGVDLVVPV 130 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIR 178 D+YVPGCPP EAL+ G++ +Q KI+ Sbjct: 131 DVYVPGCPPRPEALLEGLMRIQDKIK 156 >gi|16082574|ref|NP_394429.1| NADH dehydrogenase subunit B [Thermoplasma acidophilum DSM 1728] Length = 157 Score = 178 bits (452), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 85/143 (59%), Positives = 106/143 (74%), Gaps = 1/143 (0%) Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95 G + T++DQ + WAR+ SL +TFGLACCA+EMM D+ RFG R SPRQSD+ Sbjct: 10 GVVTTTLDQALEWARSNSLWPLTFGLACCAIEMMAIQASDMDISRFGSEIFRNSPRQSDL 69 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155 MIV+GT+T KMA +RR+YD+MP P+YVI+ G C GG Y+ YSVV G DR+VPVD+Y Sbjct: 70 MIVSGTVTKKMAPRVRRIYDEMPYPKYVIAQGVCVIQGGPYNQGYSVVLGVDRVVPVDVY 129 Query: 156 VPGCPPTAEALIYGILLLQKKIR 178 +PGCPPT EAL GI+LLQKKIR Sbjct: 130 IPGCPPTPEALTNGIILLQKKIR 152 >gi|331699311|ref|YP_004335550.1| NAD(P)H-quinone oxidoreductase subunit K [Pseudonocardia dioxanivorans CB1190] gi|326954000|gb|AEA27697.1| NAD(P)H-quinone oxidoreductase subunit K [Pseudonocardia dioxanivorans CB1190] Length = 183 Score = 178 bits (452), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 84/148 (56%), Positives = 109/148 (73%), Gaps = 2/148 (1%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RAS 89 E G L+T+V++LV W R SL TFGLACCA+EMM PRYDL RFG RAS Sbjct: 4 EEKLPSGVLLTNVEKLVNWTRKSSLWPATFGLACCAIEMMTTGAPRYDLARFGMEVFRAS 63 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQ+D+MIVAG ++NKMA LR++YDQMPEPR+V++MG CA+ GG ++ +Y++V+G D + Sbjct: 64 PRQADLMIVAGRVSNKMAPVLRQIYDQMPEPRWVLAMGVCASSGGMFN-NYAIVQGVDHV 122 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKI 177 VPVD+Y+PGCPP E LI IL + KI Sbjct: 123 VPVDMYLPGCPPRPEMLIDAILKIHAKI 150 >gi|322421849|ref|YP_004201072.1| NADH-quinone oxidoreductase subunit B [Geobacter sp. M18] gi|320128236|gb|ADW15796.1| NADH-quinone oxidoreductase, B subunit [Geobacter sp. M18] Length = 170 Score = 178 bits (451), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 80/145 (55%), Positives = 108/145 (74%), Gaps = 1/145 (0%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 + TS+D LV WAR S+ MTFGLACCA+EMM ++DL+RFG RASPRQSD +I Sbjct: 11 IITTSLDSLVNWARKSSIWPMTFGLACCAIEMMATGAAKHDLDRFGIIFRASPRQSDCII 70 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 +AGT+T KM ++ VY+QMPEP++V++MG+CA GG + +YSVV+G D +PVD+Y+P Sbjct: 71 IAGTVTQKMLPVIKTVYEQMPEPKWVVAMGACACSGGVFD-TYSVVQGIDEALPVDVYIP 129 Query: 158 GCPPTAEALIYGILLLQKKIRRVGN 182 GCPP EAL+YG++ LQ KI + N Sbjct: 130 GCPPRPEALLYGLMKLQDKISKEKN 154 >gi|10640284|emb|CAC12098.1| probable NADH dehydrogenase, chain B [Thermoplasma acidophilum] Length = 149 Score = 178 bits (451), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 85/143 (59%), Positives = 106/143 (74%), Gaps = 1/143 (0%) Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95 G + T++DQ + WAR+ SL +TFGLACCA+EMM D+ RFG R SPRQSD+ Sbjct: 2 GVVTTTLDQALEWARSNSLWPLTFGLACCAIEMMAIQASDMDISRFGSEIFRNSPRQSDL 61 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155 MIV+GT+T KMA +RR+YD+MP P+YVI+ G C GG Y+ YSVV G DR+VPVD+Y Sbjct: 62 MIVSGTVTKKMAPRVRRIYDEMPYPKYVIAQGVCVIQGGPYNQGYSVVLGVDRVVPVDVY 121 Query: 156 VPGCPPTAEALIYGILLLQKKIR 178 +PGCPPT EAL GI+LLQKKIR Sbjct: 122 IPGCPPTPEALTNGIILLQKKIR 144 >gi|39995448|ref|NP_951399.1| NADH dehydrogenase I subunit B [Geobacter sulfurreducens PCA] gi|81703477|sp|Q74GA7|NUOB_GEOSL RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|39982211|gb|AAR33672.1| NADH dehydrogenase I, B subunit [Geobacter sulfurreducens PCA] gi|298504447|gb|ADI83170.1| NADH dehydrogenase I, B subunit [Geobacter sulfurreducens KN400] Length = 170 Score = 177 bits (450), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 82/145 (56%), Positives = 107/145 (73%), Gaps = 1/145 (0%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 F+ TS+D LV WAR S+ MTFGLACCA+EMM DL+RFG RASPRQSD +I Sbjct: 11 FITTSLDSLVNWARKSSIWPMTFGLACCAIEMMATGASHNDLDRFGIIFRASPRQSDCII 70 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 +AGT+T KM ++ VY+QMPEP++V++MG+CA GG + +YSVV+G D +PVD+Y+P Sbjct: 71 IAGTVTKKMLPVIKTVYEQMPEPKWVVAMGACACSGGVFD-TYSVVQGIDTALPVDVYIP 129 Query: 158 GCPPTAEALIYGILLLQKKIRRVGN 182 GCPP EAL+YG+L LQ KI + N Sbjct: 130 GCPPRPEALLYGLLKLQDKIMKDKN 154 >gi|313901777|ref|ZP_07835202.1| NADH-quinone oxidoreductase, B subunit [Thermaerobacter subterraneus DSM 13965] gi|313467955|gb|EFR63444.1| NADH-quinone oxidoreductase, B subunit [Thermaerobacter subterraneus DSM 13965] Length = 236 Score = 177 bits (450), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 80/144 (55%), Positives = 106/144 (73%) Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVM 96 G + + +LV W R SL ++ FGLACCA+EMM A R DL+R G RASPRQ+D+M Sbjct: 87 GIVTARLQELVNWGRANSLWYLLFGLACCAIEMMAAGATRTDLDRIGSVFRASPRQADLM 146 Query: 97 IVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV 156 IV+GT+T KMA ++ +YDQM EP++VISMG+CA GG Y+ Y+VV G D+I+PVD+YV Sbjct: 147 IVSGTVTEKMAPVVKTLYDQMAEPKFVISMGACATNGGPYYQGYNVVDGVDKIIPVDVYV 206 Query: 157 PGCPPTAEALIYGILLLQKKIRRV 180 GCPP EAL++ IL LQ K+R+V Sbjct: 207 AGCPPRPEALVHAILKLQDKVRKV 230 >gi|289582900|ref|YP_003481366.1| NADH-quinone oxidoreductase subunit beta [Natrialba magadii ATCC 43099] gi|289532453|gb|ADD06804.1| NADH-quinone oxidoreductase, B subunit [Natrialba magadii ATCC 43099] Length = 235 Score = 177 bits (450), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 78/161 (48%), Positives = 112/161 (69%), Gaps = 2/161 (1%) Query: 20 EKVDADF-SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78 E VD F S++ F++T D+ + W R S+ + FG+ACC++EMM ++D Sbjct: 27 EGVDDRFNSKLREAFGASPFILTKFDEFMNWVRGNSMFMLQFGIACCSIEMMHTYAIKHD 86 Query: 79 LERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137 L+RFG PRASPRQ+DVMIV GT+ +K ++RVYDQMPEP++V+ MGSC GG + Sbjct: 87 LDRFGAGVPRASPRQADVMIVPGTIVSKFGPRMKRVYDQMPEPKFVVGMGSCTISGGPFQ 146 Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 Y+VV+G + I+P+DI+VPGCPP EAL+YG+L LQ++I+ Sbjct: 147 EGYNVVKGAEEIIPIDIHVPGCPPRPEALLYGVLKLQERIK 187 >gi|315608360|ref|ZP_07883349.1| NADH-quinone oxidoreductase subunit B [Prevotella buccae ATCC 33574] gi|315249990|gb|EFU29990.1| NADH-quinone oxidoreductase subunit B [Prevotella buccae ATCC 33574] Length = 287 Score = 177 bits (450), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 76/161 (47%), Positives = 113/161 (70%), Gaps = 3/161 (1%) Query: 21 KVDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78 K + +++ E+ G ++ ++DQL+ W R+ SL +TF +CC +E M RYD Sbjct: 17 KDNGTLEKMADELNEGGVNLVLGNLDQLINWGRSNSLWSLTFATSCCGIEFMATGCARYD 76 Query: 79 LERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137 RFGF R SPRQ+D+++ AGT+TNKMA AL+R+YD+M EP+YV+++G CA GG + Sbjct: 77 FSRFGFEVTRNSPRQADLIMCAGTITNKMAPALKRLYDEMAEPKYVVAVGGCAVSGGPFK 136 Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 SY VVRG D I+PVD+Y+PGCPP EA++YG++ LQ+K++ Sbjct: 137 SSYHVVRGIDEIIPVDVYIPGCPPRPEAIMYGMMQLQRKVK 177 >gi|219848534|ref|YP_002462967.1| NADH dehydrogenase subunit B [Chloroflexus aggregans DSM 9485] gi|238065029|sp|B8GA16|NUOB2_CHLAD RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName: Full=NADH dehydrogenase I subunit B 2; AltName: Full=NDH-1 subunit B 2 gi|219542793|gb|ACL24531.1| NADH-quinone oxidoreductase, B subunit [Chloroflexus aggregans DSM 9485] Length = 264 Score = 177 bits (450), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 83/157 (52%), Positives = 112/157 (71%), Gaps = 1/157 (0%) Query: 24 ADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFG 83 AD E+ +G L+T+V++ W R S+ M FGLACCA+EMM + RYD+ RFG Sbjct: 2 ADIDPNQLELERQGILLTTVNRFYNWGRRSSIWPMAFGLACCAIEMMAFGLSRYDVARFG 61 Query: 84 FAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142 RASPRQ+D+MIVAGT+T KMA + R+Y+QM EPRYVISMG+CA GG + Y+V Sbjct: 62 AELFRASPRQADLMIVAGTVTKKMAPQVVRLYNQMAEPRYVISMGACATSGGPFRDGYNV 121 Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179 +RG D ++PVD+YVPGCPP EAL++ ++ LQ++I R Sbjct: 122 LRGIDLLIPVDVYVPGCPPRPEALLHALMTLQEQIDR 158 >gi|288926087|ref|ZP_06420015.1| proton-translocating NADH-quinone oxidoreductase, B subunit [Prevotella buccae D17] gi|288337127|gb|EFC75485.1| proton-translocating NADH-quinone oxidoreductase, B subunit [Prevotella buccae D17] Length = 287 Score = 177 bits (449), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 76/161 (47%), Positives = 113/161 (70%), Gaps = 3/161 (1%) Query: 21 KVDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78 K + +++ E+ G ++ ++DQL+ W R+ SL +TF +CC +E M RYD Sbjct: 17 KDNGTLEKMADELNEGGVNLVLGNLDQLINWGRSNSLWSLTFATSCCGIEFMATGCARYD 76 Query: 79 LERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137 RFGF R SPRQ+D+++ AGT+TNKMA AL+R+YD+M EP+YV+++G CA GG + Sbjct: 77 FSRFGFEVTRNSPRQADLIMCAGTITNKMAPALKRLYDEMAEPKYVVAVGGCAISGGPFK 136 Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 SY VVRG D I+PVD+Y+PGCPP EA++YG++ LQ+K++ Sbjct: 137 SSYHVVRGIDEIIPVDVYIPGCPPRPEAIMYGMMQLQRKVK 177 >gi|39998533|ref|NP_954484.1| trifunctional NADH dehydrogenase I subunit B/C/D [Geobacter sulfurreducens PCA] gi|81700831|sp|Q746S4|NUBCD_GEOSL RecName: Full=NADH-quinone oxidoreductase subunit B/C/D; AltName: Full=NADH dehydrogenase I subunit B/C/D; AltName: Full=NDH-1 subunit B/C/D gi|39985480|gb|AAR36834.1| NADH dehydrogenase I, B/C/D subunits [Geobacter sulfurreducens PCA] gi|298507477|gb|ADI86200.1| NADH dehydrogenase I, B/C/D subunits [Geobacter sulfurreducens KN400] Length = 792 Score = 177 bits (449), Expect = 6e-43, Method: Composition-based stats. Identities = 78/150 (52%), Positives = 110/150 (73%), Gaps = 2/150 (1%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APRAS 89 +E+ ++ S+D L+ W R SL M FGL+CC VEMM + RYD+ RFG R + Sbjct: 4 TEVPQNNIILASLDDLINWGRANSLWPMFFGLSCCFVEMMTSFTSRYDVSRFGAEVLRGT 63 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PR++D+M++AGT+ KMA ++ R+Y+QM EP++VISMGSCAN GG Y YSVV+G ++I Sbjct: 64 PREADLMVIAGTVFKKMAPSILRLYEQMAEPKWVISMGSCANSGGMYDV-YSVVQGVNQI 122 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRR 179 +PVD++VPGCPP EA + G++LLQ+KIRR Sbjct: 123 IPVDVHVPGCPPRPEAFLQGLMLLQEKIRR 152 >gi|220904929|ref|YP_002480241.1| NADH-quinone oxidoreductase subunit B [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|238065121|sp|B8J1D6|NUOB_DESDA RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|219869228|gb|ACL49563.1| NADH-quinone oxidoreductase, B subunit [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 183 Score = 177 bits (449), Expect = 7e-43, Method: Compositional matrix adjust. Identities = 83/143 (58%), Positives = 106/143 (74%), Gaps = 1/143 (0%) Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVM 96 G ++ ++ LV W R GS+ +TFGLACCA+EMM +DL+RFG RASPRQ+D M Sbjct: 33 GAVIGPLNALVNWGRAGSIWPVTFGLACCAIEMMATGAAHHDLDRFGIIFRASPRQADCM 92 Query: 97 IVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV 156 +VAGTL+ KMA LRRVYDQMPEPRYV++MGSCA GG + SY+V +G D++VPVD+YV Sbjct: 93 VVAGTLSKKMAPVLRRVYDQMPEPRYVLAMGSCACSGGLFQ-SYAVTQGVDQVVPVDVYV 151 Query: 157 PGCPPTAEALIYGILLLQKKIRR 179 PGCPP EAL G + LQ+ I + Sbjct: 152 PGCPPRPEALFDGFIRLQEIINK 174 >gi|320161226|ref|YP_004174450.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit family protein [Anaerolinea thermophila UNI-1] gi|319995079|dbj|BAJ63850.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit family protein [Anaerolinea thermophila UNI-1] Length = 217 Score = 177 bits (448), Expect = 8e-43, Method: Compositional matrix adjust. Identities = 79/161 (49%), Positives = 117/161 (72%), Gaps = 2/161 (1%) Query: 20 EKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDL 79 E++ + I E+ ++ VT++D++ W+R SL M FGLACCA+EM+ + R+D Sbjct: 4 EELHSPGYEIPPEMQNQ-VTVTTLDRIYNWSRKNSLWPMMFGLACCAIEMIATAASRFDF 62 Query: 80 ERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY 138 RFG R SPRQ+DVMIV+GT+T KM + R+Y+QMPEP+YV++MG+CA+GGG + Sbjct: 63 SRFGMEVMRPSPRQADVMIVSGTVTKKMVPQIVRLYNQMPEPKYVVAMGACASGGGPFKE 122 Query: 139 SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179 Y+VV G D+ +PVD+Y+PGCPPT +AL+ G+++LQKK+ R Sbjct: 123 GYNVVSGIDKFIPVDVYIPGCPPTPQALLNGLIMLQKKVER 163 >gi|325857136|ref|ZP_08172426.1| NADH-quinone oxidoreductase, B subunit [Prevotella denticola CRIS 18C-A] gi|327313379|ref|YP_004328816.1| NADH-quinone oxidoreductase subunit B [Prevotella denticola F0289] gi|325483199|gb|EGC86177.1| NADH-quinone oxidoreductase, B subunit [Prevotella denticola CRIS 18C-A] gi|326945576|gb|AEA21461.1| NADH-quinone oxidoreductase, B subunit [Prevotella denticola F0289] Length = 297 Score = 177 bits (448), Expect = 8e-43, Method: Compositional matrix adjust. Identities = 77/161 (47%), Positives = 114/161 (70%), Gaps = 3/161 (1%) Query: 21 KVDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78 K + +++SE+ G ++ ++DQL+ W R+ SL +TF +CC +E M RYD Sbjct: 17 KDNDTLGKMASELNDGGTNLVLGNLDQLINWGRSNSLWSLTFATSCCGIEFMAVGCARYD 76 Query: 79 LERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137 RFGF R SPRQ+D+++ AGT+TNKMA AL+R+YD+M EP+YV+++G CA GG + Sbjct: 77 FSRFGFEVTRNSPRQADLIMCAGTITNKMAPALKRLYDEMAEPKYVVAVGGCAISGGPFK 136 Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 SY V+RG D I+PVD+Y+PGCPP EA+IYG++ LQ+K++ Sbjct: 137 DSYHVMRGIDEIIPVDVYIPGCPPRPEAIIYGMMQLQRKVK 177 >gi|258592365|emb|CBE68674.1| NADH-ubiquinone oxidoreductase 20 kDa subunit (NADH dehydrogenase subunit 10) [NC10 bacterium 'Dutch sediment'] Length = 175 Score = 177 bits (448), Expect = 9e-43, Method: Compositional matrix adjust. Identities = 85/143 (59%), Positives = 110/143 (76%), Gaps = 2/143 (1%) Query: 39 LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMI 97 + T+V+ L WAR S MTFGLACCA+EMM A R+DL+R G R SPRQSDVMI Sbjct: 14 ITTTVEWLFNWARKSSPWPMTFGLACCAIEMMAAGASRFDLDRLGAGVFRPSPRQSDVMI 73 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCA-NGGGYYHYSYSVVRGCDRIVPVDIYV 156 VAGT+T KMA ++ +Y+QMP+P++VI+MG+CA +GG +Y+ +Y VV+G D +VPVD+YV Sbjct: 74 VAGTVTEKMAPRIKTLYEQMPDPKWVIAMGACAISGGPFYYDAYHVVKGVDLLVPVDVYV 133 Query: 157 PGCPPTAEALIYGILLLQKKIRR 179 PGCPPT EALI+GIL LQ +I R Sbjct: 134 PGCPPTPEALIFGILTLQDQIMR 156 >gi|282881432|ref|ZP_06290106.1| NADH-quinone oxidoreductase, B subunit [Prevotella timonensis CRIS 5C-B1] gi|281304658|gb|EFA96744.1| NADH-quinone oxidoreductase, B subunit [Prevotella timonensis CRIS 5C-B1] Length = 231 Score = 176 bits (447), Expect = 9e-43, Method: Compositional matrix adjust. Identities = 82/161 (50%), Positives = 109/161 (67%), Gaps = 3/161 (1%) Query: 21 KVDADFSRISSEITHKGFLVT--SVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78 K + RI E+ G V S+DQL+ W R SL +TF +CC +E M RYD Sbjct: 17 KDNESLERIVDELHEGGVNVVTGSLDQLINWGRANSLWSLTFATSCCGIEFMAVGCARYD 76 Query: 79 LERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137 RFGF R SPRQ+D+++ AGT+TNKMA A RR+YD+M EP+YVI++G CA GG + Sbjct: 77 FARFGFEVTRNSPRQADLIMCAGTITNKMAPAFRRLYDEMAEPKYVIAVGGCAISGGPFK 136 Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 SY VVRG D IVPVD+++PGCPP EA++YG++ LQ+KI+ Sbjct: 137 SSYHVVRGIDEIVPVDVFIPGCPPRPEAIMYGMMQLQRKIK 177 >gi|163847546|ref|YP_001635590.1| NADH dehydrogenase subunit B [Chloroflexus aurantiacus J-10-fl] gi|222525396|ref|YP_002569867.1| NADH dehydrogenase subunit B [Chloroflexus sp. Y-400-fl] gi|238065006|sp|A9WED9|NUOB1_CHLAA RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName: Full=NADH dehydrogenase I subunit B 1; AltName: Full=NDH-1 subunit B 1 gi|238065008|sp|B9LGT9|NUOB1_CHLSY RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName: Full=NADH dehydrogenase I subunit B 1; AltName: Full=NDH-1 subunit B 1 gi|163668835|gb|ABY35201.1| NADH-quinone oxidoreductase, B subunit [Chloroflexus aurantiacus J-10-fl] gi|222449275|gb|ACM53541.1| NADH-quinone oxidoreductase, B subunit [Chloroflexus sp. Y-400-fl] Length = 264 Score = 176 bits (447), Expect = 9e-43, Method: Compositional matrix adjust. Identities = 82/157 (52%), Positives = 112/157 (71%), Gaps = 1/157 (0%) Query: 24 ADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFG 83 A+ E+ +G L+T+V++ W R S+ M FGLACCA+EMM + RYD+ RFG Sbjct: 2 AEIDPTQLELERQGILLTTVNRFYNWGRRSSIWPMAFGLACCAIEMMAFGLSRYDVARFG 61 Query: 84 FAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142 RASPRQ+D+MIVAGT+T KMA + R+Y+QM EPRYVISMG+CA GG + Y+V Sbjct: 62 AELFRASPRQADLMIVAGTVTKKMAPQVVRLYNQMAEPRYVISMGACATSGGPFRDGYNV 121 Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179 +RG D ++PVD+YVPGCPP EAL++ ++ LQ++I R Sbjct: 122 LRGIDLLIPVDVYVPGCPPRPEALLHALMTLQEQIDR 158 >gi|282877800|ref|ZP_06286613.1| NADH-quinone oxidoreductase, B subunit [Prevotella buccalis ATCC 35310] gi|281300116|gb|EFA92472.1| NADH-quinone oxidoreductase, B subunit [Prevotella buccalis ATCC 35310] Length = 231 Score = 176 bits (447), Expect = 9e-43, Method: Compositional matrix adjust. Identities = 82/161 (50%), Positives = 109/161 (67%), Gaps = 3/161 (1%) Query: 21 KVDADFSRISSEITHKGFLVT--SVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78 K + RI E+ G V S+DQL+ W R SL +TF +CC +E M RYD Sbjct: 17 KDNESLERIVDELHEGGVNVVTGSLDQLINWGRANSLWSLTFATSCCGIEFMAVGCARYD 76 Query: 79 LERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137 RFGF R SPRQ+D+++ AGT+TNKMA A RR+YD+M EP+YVI++G CA GG + Sbjct: 77 FARFGFEVTRNSPRQADLIMCAGTITNKMAPAFRRLYDEMAEPKYVIAVGGCAISGGPFK 136 Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 SY VVRG D IVPVD+++PGCPP EA++YG++ LQ+KI+ Sbjct: 137 SSYHVVRGIDEIVPVDVFIPGCPPRPEAIMYGMMQLQRKIK 177 >gi|307566084|ref|ZP_07628542.1| NADH-quinone oxidoreductase, B subunit [Prevotella amnii CRIS 21A-A] gi|307345272|gb|EFN90651.1| NADH-quinone oxidoreductase, B subunit [Prevotella amnii CRIS 21A-A] Length = 289 Score = 176 bits (447), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 78/166 (46%), Positives = 117/166 (70%), Gaps = 6/166 (3%) Query: 14 QSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQAS 73 + + +L+K+ AD + + + ++ ++DQL+ W R+ SL +TF +CC +E M Sbjct: 17 KDNDTLDKMAADLNDGGTNL-----VLGNLDQLINWGRSNSLWSLTFATSCCGIEFMSVG 71 Query: 74 MPRYDLERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANG 132 RYD RFGF R SPRQ+D+++ AGT+TNKMA AL+R+YD+M EP+YVI++G CA Sbjct: 72 CARYDFSRFGFEVTRNSPRQADLIMCAGTITNKMAPALKRLYDEMAEPKYVIAVGGCAIS 131 Query: 133 GGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 GG + SY V+RG D I+PVD+Y+PGCPP EA+IYG++ LQ+K++ Sbjct: 132 GGPFKNSYHVMRGIDEIIPVDVYIPGCPPRPEAIIYGMMQLQRKVK 177 >gi|303237657|ref|ZP_07324217.1| putative NADH dehydrogenase subunit B [Prevotella disiens FB035-09AN] gi|302482109|gb|EFL45144.1| putative NADH dehydrogenase subunit B [Prevotella disiens FB035-09AN] Length = 288 Score = 176 bits (447), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 77/161 (47%), Positives = 114/161 (70%), Gaps = 3/161 (1%) Query: 21 KVDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78 K + ++++++ G ++ ++DQL+ W R+ SL +TF +CC +E M RYD Sbjct: 17 KDNDTLEQMANDLNDGGTNLVLGNLDQLINWGRSNSLWSLTFATSCCGIEFMAVGCARYD 76 Query: 79 LERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137 RFGF R SPRQ+D+++ AGT+TNKMA AL+R+YDQM EP+YVI++G CA GG + Sbjct: 77 FSRFGFEVTRNSPRQADLIMCAGTITNKMAPALKRLYDQMAEPKYVIAVGGCAISGGPFK 136 Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 SY V+RG D I+PVD+Y+PGCPP EA+IYG++ LQ+K++ Sbjct: 137 DSYHVMRGIDEIIPVDVYIPGCPPRPEAIIYGMMQLQRKVK 177 >gi|197120286|ref|YP_002140713.1| NADH dehydrogenase I subunit B [Geobacter bemidjiensis Bem] gi|238065151|sp|B5EFG2|NUOB_GEOBB RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|197089646|gb|ACH40917.1| NADH dehydrogenase I, B subunit [Geobacter bemidjiensis Bem] Length = 170 Score = 176 bits (447), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 80/147 (54%), Positives = 108/147 (73%), Gaps = 1/147 (0%) Query: 36 KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDV 95 + + TS+D LV WAR S+ MTFGLACCA+EMM ++DL+RFG RASPRQ+D Sbjct: 9 ENIITTSLDSLVNWARKSSIWPMTFGLACCAIEMMATGAAKHDLDRFGIIFRASPRQADC 68 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155 +I+AGT+T KM ++ VY+QMPEP++V++MG+CA GG + +YSVV+G D +PVD+Y Sbjct: 69 IIIAGTVTKKMLPVIKTVYEQMPEPKWVVAMGACACSGGVFD-TYSVVQGIDEALPVDVY 127 Query: 156 VPGCPPTAEALIYGILLLQKKIRRVGN 182 +PGCPP EAL+YG+L LQ KI N Sbjct: 128 IPGCPPRPEALLYGLLKLQDKIANERN 154 >gi|322369187|ref|ZP_08043752.1| NADH-quinone oxidoreductase, B subunit [Haladaptatus paucihalophilus DX253] gi|320550919|gb|EFW92568.1| NADH-quinone oxidoreductase, B subunit [Haladaptatus paucihalophilus DX253] Length = 211 Score = 176 bits (447), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 76/160 (47%), Positives = 114/160 (71%), Gaps = 2/160 (1%) Query: 20 EKVDADF-SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78 E VD F S++ F++T D+ + W R S+ + FG+ACC++EMM ++D Sbjct: 3 EGVDDRFNSKLREAFGASPFILTKFDKFMNWVRGSSMFMLQFGIACCSIEMMHTYAVKHD 62 Query: 79 LERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137 L+RFG PRASPRQ+DVMIV GT+ +K A ++RVYDQMPEP++V++MGSCA GG + Sbjct: 63 LDRFGSGVPRASPRQADVMIVPGTVVSKFAPRMKRVYDQMPEPKFVVNMGSCAISGGPFQ 122 Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 Y+V++G + ++P+DI+VPGCPP EAL+YG++ LQ+++ Sbjct: 123 EGYNVIKGAEEVIPIDIHVPGCPPRPEALVYGVVKLQERV 162 >gi|91203915|emb|CAJ71568.1| strongly similar to proton-translocating NADH dehydrogenase I chain B [Candidatus Kuenenia stuttgartiensis] Length = 155 Score = 176 bits (447), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 83/149 (55%), Positives = 114/149 (76%), Gaps = 4/149 (2%) Query: 34 THKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASP 90 +H G L T++ +V WAR SL M FGLACCA+EMM PR+DL RFG R SP Sbjct: 5 SHLGDNILTTTLTTMVNWARKSSLWPMPFGLACCAIEMMAVVAPRHDLARFGAEVFRFSP 64 Query: 91 RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150 RQSD+MIVAGTLT KMAS +++Y+QMPEP++V++MG+CA GG ++ +YSVV+G ++++ Sbjct: 65 RQSDLMIVAGTLTYKMASVAKKIYEQMPEPKWVVAMGACAVSGGVFN-TYSVVQGLEQVI 123 Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRR 179 PVD+Y+PGCPP EALI+ I+ +QKKI++ Sbjct: 124 PVDVYLPGCPPRPEALIHAIMEIQKKIQK 152 >gi|95928442|ref|ZP_01311190.1| NADH-quinone oxidoreductase, B subunit [Desulfuromonas acetoxidans DSM 684] gi|95135713|gb|EAT17364.1| NADH-quinone oxidoreductase, B subunit [Desulfuromonas acetoxidans DSM 684] Length = 179 Score = 176 bits (447), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 79/151 (52%), Positives = 112/151 (74%), Gaps = 1/151 (0%) Query: 32 EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPR 91 + + S+D++V W+R+ SL MTFGLACCA+EMM R+DL+R G RASPR Sbjct: 16 HVLGNNIMTASLDKVVNWSRSRSLWPMTFGLACCAIEMMATGAARFDLDRMGVLFRASPR 75 Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151 Q+DV+I+AGT+T+KM + VY+QMPEP+YVI+MG+CA+ GG + +YSV++G D+ +P Sbjct: 76 QADVIIIAGTVTHKMLPVIETVYEQMPEPKYVIAMGACASSGGVFD-TYSVLQGIDQALP 134 Query: 152 VDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182 VD+Y+PGCPP E L+YG++ LQ+KI R N Sbjct: 135 VDVYIPGCPPRPEGLLYGLMKLQEKIMRERN 165 >gi|148657099|ref|YP_001277304.1| NADH dehydrogenase subunit B [Roseiflexus sp. RS-1] gi|238065018|sp|A5UXK1|NUOB1_ROSS1 RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName: Full=NADH dehydrogenase I subunit B 1; AltName: Full=NDH-1 subunit B 1 gi|148569209|gb|ABQ91354.1| NADH-quinone oxidoreductase, B subunit [Roseiflexus sp. RS-1] Length = 268 Score = 176 bits (446), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 82/164 (50%), Positives = 115/164 (70%), Gaps = 3/164 (1%) Query: 24 ADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFG 83 +D I E G +T++ + W R S+ ++FGLACCA+EMM + R+DL RFG Sbjct: 2 SDDREIQLEAEKHGVFLTTMQRFYNWGRRSSIWPLSFGLACCAIEMMATGLARFDLARFG 61 Query: 84 FAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142 RASPRQ+D+MIVAGT+T KMA + R+Y+QMPEPRYVISMG+CA GG + Y+V Sbjct: 62 AEMFRASPRQADLMIVAGTVTKKMAPQVVRLYNQMPEPRYVISMGACATSGGPFRDGYNV 121 Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI--RRVGNVK 184 +RG D ++PVD+Y+PGCPP EAL++ ++ LQK+I +R+ V+ Sbjct: 122 LRGIDLLIPVDVYIPGCPPRPEALLHALMTLQKQIDAQRLNQVR 165 >gi|13541946|ref|NP_111634.1| NADH dehydrogenase subunit B [Thermoplasma volcanium GSS1] Length = 157 Score = 176 bits (446), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 85/143 (59%), Positives = 105/143 (73%), Gaps = 1/143 (0%) Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95 G + T+V+Q WAR+ SL +TFGLACCA+EMM D+ RFG R SPRQSD+ Sbjct: 10 GIVTTTVEQAYEWARSNSLWPLTFGLACCAIEMMAIQASDMDISRFGSEIFRNSPRQSDL 69 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155 MIV+GT+T KMA +RR+YD+MP P+YVI+ G C GG Y+ YSVV G D++VPVD+Y Sbjct: 70 MIVSGTVTKKMAPRVRRIYDEMPYPKYVIAQGVCVIQGGPYNQGYSVVLGVDKVVPVDVY 129 Query: 156 VPGCPPTAEALIYGILLLQKKIR 178 VPGCPPT EAL GI+LLQKKIR Sbjct: 130 VPGCPPTPEALTNGIILLQKKIR 152 >gi|284164402|ref|YP_003402681.1| NADH-quinone oxidoreductase, B subunit [Haloterrigena turkmenica DSM 5511] gi|284014057|gb|ADB60008.1| NADH-quinone oxidoreductase, B subunit [Haloterrigena turkmenica DSM 5511] Length = 235 Score = 176 bits (446), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 76/153 (49%), Positives = 107/153 (69%), Gaps = 1/153 (0%) Query: 27 SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA- 85 S++ F++T D+ + W R S+ + FG+ACC++EMM ++DL+RFG Sbjct: 35 SKLREAFGSTPFILTKFDKFMNWVRGNSMFMLQFGIACCSIEMMHTYAIKHDLDRFGAGV 94 Query: 86 PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRG 145 PRASPRQ+DVMIV GT+ +K ++RVYDQMPEP++V+ MGSC GG + Y+VV+G Sbjct: 95 PRASPRQADVMIVPGTIVSKFGPRMKRVYDQMPEPKFVVGMGSCTISGGPFQEGYNVVKG 154 Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 + I+PVDI+VPGCPP EAL+YGI LQ++IR Sbjct: 155 AEEIIPVDIHVPGCPPRPEALVYGIAKLQERIR 187 >gi|223936528|ref|ZP_03628439.1| NADH-quinone oxidoreductase, B subunit [bacterium Ellin514] gi|223894692|gb|EEF61142.1| NADH-quinone oxidoreductase, B subunit [bacterium Ellin514] Length = 203 Score = 176 bits (446), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 79/150 (52%), Positives = 109/150 (72%), Gaps = 1/150 (0%) Query: 29 ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-R 87 + +E++ +G TS++ L W R S+ M FGLACCA+EM+ +M RYDL RFG R Sbjct: 5 LRNELSKQGIFTTSMEALYNWGRKNSVWPMQFGLACCAIEMIATTMARYDLARFGAEVFR 64 Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCD 147 SPRQ+D+MIVAGT+T KMA + R+Y+QMPEP+YVI+MG+CA GG + Y+V++G D Sbjct: 65 PSPRQADLMIVAGTVTKKMAPQVVRLYNQMPEPKYVIAMGACAISGGPFKQGYNVLKGID 124 Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 R +PVD+++PGCPP EALI + LQ+KI Sbjct: 125 RFIPVDVHIPGCPPRPEALIEAFMALQRKI 154 >gi|150017836|ref|YP_001310090.1| NADH-quinone oxidoreductase, B subunit [Clostridium beijerinckii NCIMB 8052] gi|238055288|sp|A6LXQ4|NUOB_CLOB8 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|149904301|gb|ABR35134.1| NADH-quinone oxidoreductase, B subunit [Clostridium beijerinckii NCIMB 8052] Length = 169 Score = 176 bits (446), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 81/148 (54%), Positives = 109/148 (73%), Gaps = 1/148 (0%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RAS 89 E K ++T +D + + R S +TFGLACCA+EMM A RYD+ RFG+ RAS Sbjct: 12 QEQIEKNIILTKLDDTLNYFRAHSFWPLTFGLACCAIEMMAAGGARYDIARFGYEVFRAS 71 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQ+D+MIVAGT+T KMA ++++YDQMPEP++VI+MGSCA GG + SY+VV G D Sbjct: 72 PRQADLMIVAGTITEKMAPIVKKIYDQMPEPKWVIAMGSCATSGGPFVDSYNVVPGADTF 131 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKI 177 +PVD+Y+PGCPP EALI+G+L L++KI Sbjct: 132 LPVDVYIPGCPPRPEALIHGLLTLKEKI 159 >gi|282860263|ref|ZP_06269333.1| NADH-quinone oxidoreductase, B subunit [Prevotella bivia JCVIHMP010] gi|282586937|gb|EFB92172.1| NADH-quinone oxidoreductase, B subunit [Prevotella bivia JCVIHMP010] Length = 301 Score = 176 bits (445), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 76/161 (47%), Positives = 114/161 (70%), Gaps = 3/161 (1%) Query: 21 KVDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78 K + +++S++ G ++ ++DQL+ W R+ SL +TF +CC +E M RYD Sbjct: 17 KDNDTLDKMASDLNDGGTSLVLGNLDQLINWGRSNSLWSLTFATSCCGIEFMSVGCARYD 76 Query: 79 LERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137 RFGF R SPRQ+D+++ AGT+TNKMA AL+R+YD+M EP+YVI++G CA GG + Sbjct: 77 FSRFGFEVTRNSPRQADLIMCAGTITNKMAPALKRLYDEMAEPKYVIAVGGCAISGGPFK 136 Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 SY V+RG D I+PVD+++PGCPP EA+IYG++ LQ+K++ Sbjct: 137 NSYHVMRGIDEIIPVDVFIPGCPPRPEAIIYGMMQLQRKVK 177 >gi|300087933|ref|YP_003758455.1| NADH-quinone oxidoreductase subunit B [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299527666|gb|ADJ26134.1| NADH-quinone oxidoreductase, B subunit [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 203 Score = 176 bits (445), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 81/157 (51%), Positives = 115/157 (73%), Gaps = 1/157 (0%) Query: 29 ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-R 87 ++ + L+TSVD++V W+R S+ +TFGLACCA+EMM + R+DL RFG R Sbjct: 42 LNEDALPPNVLLTSVDKVVNWSRRYSMWPVTFGLACCAIEMMSMAASRFDLARFGMEIFR 101 Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCD 147 ASPRQ+D+MI+AGTLT KMA LRR+YDQMP+P++V++MGSC GG ++ SY+VV G + Sbjct: 102 ASPRQADLMIIAGTLTWKMAPWLRRIYDQMPDPKWVVAMGSCGISGGLFNDSYAVVPGFN 161 Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 R+VPVD+YVPGCPP EAL+ I+ + K+ ++ + Sbjct: 162 RVVPVDVYVPGCPPRPEALMQAIMDIHAKVDKMSPTR 198 >gi|156742064|ref|YP_001432193.1| NADH dehydrogenase subunit B [Roseiflexus castenholzii DSM 13941] gi|238065038|sp|A7NL05|NUOB2_ROSCS RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName: Full=NADH dehydrogenase I subunit B 2; AltName: Full=NDH-1 subunit B 2 gi|156233392|gb|ABU58175.1| NADH-quinone oxidoreductase, B subunit [Roseiflexus castenholzii DSM 13941] Length = 268 Score = 176 bits (445), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 82/164 (50%), Positives = 116/164 (70%), Gaps = 3/164 (1%) Query: 24 ADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFG 83 +D I E +G +T++ + W R S+ ++FGLACCA+EMM + R+DL RFG Sbjct: 2 SDDRDIQLEAEKQGVFLTTMQRFYNWGRRSSVWPLSFGLACCAIEMMATGLARFDLARFG 61 Query: 84 FAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142 RASPRQ+D+MIVAGT+T KMA + R+Y+QMPEPRYVISMG+CA GG + Y+V Sbjct: 62 AEMFRASPRQADLMIVAGTVTKKMAPQVVRLYNQMPEPRYVISMGACATSGGPFRDGYNV 121 Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI--RRVGNVK 184 +RG D ++PVD+Y+PGCPP EAL++ ++ LQK+I +R+ V+ Sbjct: 122 LRGIDLLIPVDVYIPGCPPRPEALLHALMTLQKQIDAQRLNRVR 165 >gi|148699634|gb|EDL31581.1| NADH dehydrogenase (ubiquinone) Fe-S protein 7, isoform CRA_c [Mus musculus] Length = 167 Score = 176 bits (445), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 82/104 (78%), Positives = 92/104 (88%), Gaps = 3/104 (2%) Query: 81 RFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSY 140 + PR+ ++DVMIVAGTLTNKMA ALR+VYDQMPEPRYV+SMGSCANGGGYYHYSY Sbjct: 62 KLSHLPRS---RADVMIVAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGYYHYSY 118 Query: 141 SVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 SVVRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQ+KI+R +K Sbjct: 119 SVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQRKIKREQKLK 162 >gi|253702594|ref|YP_003023783.1| NADH-quinone oxidoreductase, B subunit [Geobacter sp. M21] gi|259514665|sp|C6E8N4|NUOB_GEOSM RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|251777444|gb|ACT20025.1| NADH-quinone oxidoreductase, B subunit [Geobacter sp. M21] Length = 170 Score = 176 bits (445), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 79/147 (53%), Positives = 108/147 (73%), Gaps = 1/147 (0%) Query: 36 KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDV 95 + + TS+D LV WAR S+ MTFGLACCA+EMM ++DL+RFG RASPRQ+D Sbjct: 9 ENIITTSLDSLVNWARKSSIWPMTFGLACCAIEMMATGAAKHDLDRFGIIFRASPRQADC 68 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155 +I+AGT+T KM ++ VY+QMPEP++V++MG+CA GG + +YSVV+G D +PVD+Y Sbjct: 69 IIIAGTVTKKMLPVIKTVYEQMPEPKWVVAMGACACSGGVFD-TYSVVQGIDEALPVDVY 127 Query: 156 VPGCPPTAEALIYGILLLQKKIRRVGN 182 +PGCPP EAL+YG++ LQ KI N Sbjct: 128 IPGCPPRPEALLYGLMKLQDKIANERN 154 >gi|222479140|ref|YP_002565377.1| NADH-quinone oxidoreductase, B subunit [Halorubrum lacusprofundi ATCC 49239] gi|222452042|gb|ACM56307.1| NADH-quinone oxidoreductase, B subunit [Halorubrum lacusprofundi ATCC 49239] Length = 232 Score = 175 bits (444), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 77/180 (42%), Positives = 117/180 (65%), Gaps = 9/180 (5%) Query: 7 NQKIISGQSSCSLEKVDADF--------SRISSEITHKGFLVTSVDQLVTWARTGSLMWM 58 +Q I+ +S E D+ SR+ F++T D+ + W R S+ + Sbjct: 4 DQPFITDESQVVTETRDSRMTGQGDRFNSRLREAFGSSPFILTKFDKFLNWCRGSSMFML 63 Query: 59 TFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQM 117 FG+ACC++EMM ++DL+RFG PRASPRQ+DVMIV GT+ +K A ++RVYDQM Sbjct: 64 QFGIACCSIEMMHTYAVKHDLDRFGSGVPRASPRQADVMIVPGTIVSKFAPRMKRVYDQM 123 Query: 118 PEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 PEP++V+ MGSC GG + Y+V++G + ++P+DI+VPGCPP EAL+YG++ LQ+++ Sbjct: 124 PEPKFVVGMGSCTISGGPFQEGYNVIKGAEEVIPIDIHVPGCPPRPEALVYGVVKLQERV 183 >gi|94970385|ref|YP_592433.1| NADH-quinone oxidoreductase, B subunit [Candidatus Koribacter versatilis Ellin345] gi|238065024|sp|Q1IL91|NUOB2_ACIBL RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName: Full=NADH dehydrogenase I subunit B 2; AltName: Full=NDH-1 subunit B 2 gi|94552435|gb|ABF42359.1| NADH dehydrogenase subunit B [Candidatus Koribacter versatilis Ellin345] Length = 202 Score = 175 bits (444), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 83/144 (57%), Positives = 111/144 (77%), Gaps = 2/144 (1%) Query: 35 HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQS 93 K FL++SVD + WAR S+ MTFGLACCA+EM+ AS RYD+ RFG R SPRQS Sbjct: 9 EKNFLLSSVDYVFNWARKSSVWPMTFGLACCAIEMITASTARYDIARFGSEVFRPSPRQS 68 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD 153 D+MIVAGT+T KMA ++R+Y+QMPEP++V++MG+CA+ GG ++ +Y+ ++G D+IVPVD Sbjct: 69 DLMIVAGTVTLKMAPVVQRIYEQMPEPKWVMAMGACASVGGPFN-TYATLQGVDKIVPVD 127 Query: 154 IYVPGCPPTAEALIYGILLLQKKI 177 +YV GCPP E L YG+L LQ KI Sbjct: 128 VYVVGCPPRPENLFYGLLKLQDKI 151 >gi|258651217|ref|YP_003200373.1| NADH dehydrogenase subunit B [Nakamurella multipartita DSM 44233] gi|258554442|gb|ACV77384.1| NADH-quinone oxidoreductase, B subunit [Nakamurella multipartita DSM 44233] Length = 199 Score = 175 bits (443), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 84/148 (56%), Positives = 107/148 (72%), Gaps = 2/148 (1%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RAS 89 E G L+TSV++LV W R SL TFGLACCA+EMM PRYDL RFG RAS Sbjct: 4 EEKLPNGVLLTSVEKLVNWTRKASLFPATFGLACCAIEMMTTGAPRYDLGRFGMEVFRAS 63 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQ+D+MIVAG ++ KMA LR++YDQM EP++V+SMG CA+ GG ++ +Y++V+G D + Sbjct: 64 PRQADLMIVAGRVSQKMAPVLRQIYDQMAEPKWVLSMGVCASSGGMFN-NYAIVQGVDHV 122 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKI 177 VPVD+Y+PGCPP E LI IL L KI Sbjct: 123 VPVDMYLPGCPPRPEMLIDAILKLHAKI 150 >gi|110667597|ref|YP_657408.1| NADH dehydrogenase, subunit B (ubiquinone) [Haloquadratum walsbyi DSM 16790] gi|109625344|emb|CAJ51766.1| NADH dehydrogenase, subunit B (ubiquinone) [Haloquadratum walsbyi DSM 16790] Length = 234 Score = 175 bits (443), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 76/178 (42%), Positives = 115/178 (64%), Gaps = 2/178 (1%) Query: 2 GLTTVNQKIISGQSSCSLEKVDADF-SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTF 60 T + ++ + + D F S++ F++T DQ + W R S+ + F Sbjct: 8 AFVTDDTQVQTDTRDARISGTDERFNSKLREAFGSSPFILTKFDQFMNWVRGSSMFMLQF 67 Query: 61 GLACCAVEMMQASMPRYDLERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119 G+ACC++EMM ++DL+RFG PRASPRQ+DV+IV GT+ +K A ++RVYDQMPE Sbjct: 68 GIACCSIEMMHTYAVKHDLDRFGAGVPRASPRQADVIIVPGTIVSKFAPRMKRVYDQMPE 127 Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 P++V+ MGSC GG + Y+V++G + ++PVDI++PGCPP EAL+YGI LQ++I Sbjct: 128 PKFVVGMGSCTVSGGPFQEGYNVIKGAEEVIPVDIHIPGCPPRPEALVYGIAKLQERI 185 >gi|15789834|ref|NP_279658.1| NADH dehydrogenase/oxidoreductase [Halobacterium sp. NRC-1] gi|169235555|ref|YP_001688755.1| NADH dehydrogenase-like complex subunit B [Halobacterium salinarum R1] gi|10580226|gb|AAG19138.1| NADH dehydrogenase/oxidoreductase [Halobacterium sp. NRC-1] gi|167726621|emb|CAP13406.1| NADH dehydrogenase-like complex subunit B [Halobacterium salinarum R1] Length = 235 Score = 175 bits (443), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 77/177 (43%), Positives = 119/177 (67%), Gaps = 2/177 (1%) Query: 3 LTTVNQKIISGQSSCSLEKVDADF-SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFG 61 +T + + S + + + VD F SR+ F++T D+ + W R S+ + FG Sbjct: 10 ITDTSDPLTSTRDARMGDGVDDRFNSRLREAFGSTPFILTKFDKFMNWVRGSSMFMLQFG 69 Query: 62 LACCAVEMMQASMPRYDLERF-GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 +ACC++EMM ++DL+RF PRASPRQ+DVMIV GT+ +K A ++RVYDQMPEP Sbjct: 70 IACCSIEMMHTYSVKHDLDRFHAGVPRASPRQADVMIVPGTIVSKFAPRMKRVYDQMPEP 129 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 ++V++MG+C+ GG + Y+VV+G + ++PVDI++PGCPP EAL+YG+ LQ++I Sbjct: 130 KFVVNMGNCSTSGGPFQEGYNVVKGAEEVIPVDIHIPGCPPRPEALVYGVAKLQERI 186 >gi|326772151|ref|ZP_08231436.1| NADH dehydrogenase I, B subunit [Actinomyces viscosus C505] gi|326638284|gb|EGE39185.1| NADH dehydrogenase I, B subunit [Actinomyces viscosus C505] Length = 204 Score = 174 bits (442), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 81/160 (50%), Positives = 120/160 (75%), Gaps = 2/160 (1%) Query: 21 KVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLE 80 K + ++ ++E+ + GFL+T+V++L A+ S+ +T GLACCA+EMM A PR+D+ Sbjct: 14 KRNDPYAAAAAEVDNPGFLLTTVEKLAGLAQARSMWPVTMGLACCAIEMMAAGTPRFDMA 73 Query: 81 RFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS 139 RFG+ RASPR +DVMIV+G +++KMA +R VYD MPEP++VISMG+CA+ GG ++ + Sbjct: 74 RFGWEVFRASPRHADVMIVSGRVSHKMAPIVRNVYDSMPEPKWVISMGACASSGGIFN-N 132 Query: 140 YSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179 Y+VV+GCD IVPVDIY+PGCPP E L+ +L L ++I + Sbjct: 133 YAVVQGCDHIVPVDIYLPGCPPRPEMLLNAMLELTRQIEK 172 >gi|159901492|ref|YP_001547739.1| NADH dehydrogenase subunit B [Herpetosiphon aurantiacus ATCC 23779] gi|238065032|sp|A9B478|NUOB2_HERA2 RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName: Full=NADH dehydrogenase I subunit B 2; AltName: Full=NDH-1 subunit B 2 gi|159894531|gb|ABX07611.1| NADH-quinone oxidoreductase, B subunit [Herpetosiphon aurantiacus ATCC 23779] Length = 250 Score = 174 bits (442), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 80/147 (54%), Positives = 108/147 (73%), Gaps = 1/147 (0%) Query: 32 EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASP 90 ++ +G L T++++L W R S+ M FGLACCA+EM+ A+ RYD+ RFG RASP Sbjct: 9 DLEQQGVLFTTINKLYNWGRRSSVWPMQFGLACCAIEMIAAAASRYDISRFGSELFRASP 68 Query: 91 RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150 RQ+DVMIVAGT+T KM + R+++QMPEPRYVISMG+CA GG + Y+VVRG D V Sbjct: 69 RQADVMIVAGTVTKKMVPQVVRLFNQMPEPRYVISMGACATSGGPFRDGYNVVRGVDLYV 128 Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKI 177 PVD+Y+PGCPP EAL++ ++ LQ +I Sbjct: 129 PVDVYIPGCPPRPEALLHALMTLQAQI 155 >gi|257387965|ref|YP_003177738.1| NADH-quinone oxidoreductase subunit beta [Halomicrobium mukohataei DSM 12286] gi|257170272|gb|ACV48031.1| NADH-quinone oxidoreductase, B subunit [Halomicrobium mukohataei DSM 12286] Length = 229 Score = 174 bits (442), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 74/152 (48%), Positives = 108/152 (71%), Gaps = 1/152 (0%) Query: 27 SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA- 85 S++ F++T D+ + W R S+ + FG+ACC++EMM ++DL+RFG Sbjct: 29 SKLREAFGSTPFILTKFDKFMNWVRGSSMFMLQFGIACCSIEMMHTYAVKHDLDRFGAGV 88 Query: 86 PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRG 145 PRASPRQ+DV+IV GT+ +K A ++RVYDQMPEP++V+SMGSC GG + Y+V++G Sbjct: 89 PRASPRQADVIIVPGTIVSKFAPRMKRVYDQMPEPKFVVSMGSCTISGGPFQEGYNVIKG 148 Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 + ++PVDI+VPGCPP EALIYG+ LQ++I Sbjct: 149 AEEVIPVDIHVPGCPPRPEALIYGVAKLQERI 180 >gi|148266253|ref|YP_001232959.1| NADH-quinone oxidoreductase, B subunit [Geobacter uraniireducens Rf4] gi|238065155|sp|A5G9B8|NUOB_GEOUR RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|146399753|gb|ABQ28386.1| NADH dehydrogenase subunit B [Geobacter uraniireducens Rf4] Length = 170 Score = 174 bits (442), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 80/145 (55%), Positives = 107/145 (73%), Gaps = 1/145 (0%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 + S+D LV WAR S+ MTFGLACCA+EMM ++DL+RFG RASPRQSD +I Sbjct: 11 IVTASLDGLVNWARKSSIWPMTFGLACCAIEMMATGAAKHDLDRFGIIFRASPRQSDCII 70 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 +AGT+T KM ++ VY+QMPEP++VI+MG+CA GG + +YSVV+G D +PVD+Y+P Sbjct: 71 IAGTVTKKMLPVIKTVYEQMPEPKWVIAMGACACSGGVFD-TYSVVQGVDEALPVDVYIP 129 Query: 158 GCPPTAEALIYGILLLQKKIRRVGN 182 GCPP EAL+YG++ LQ KI + N Sbjct: 130 GCPPRPEALLYGLMKLQDKIGKERN 154 >gi|76801790|ref|YP_326798.1| NADH dehydrogenase-like complex, subunit B [Natronomonas pharaonis DSM 2160] gi|76557655|emb|CAI49238.1| NADH dehydrogenase-like complex, subunit B [Natronomonas pharaonis DSM 2160] Length = 227 Score = 174 bits (441), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 79/169 (46%), Positives = 115/169 (68%), Gaps = 2/169 (1%) Query: 12 SGQSSCSLEKVDADF-SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMM 70 S Q + + VD F S++ F++T D+ + W R S+ + FG+ACC++EM+ Sbjct: 11 STQQARMGDGVDDRFNSKLREAFGSTPFILTKFDKFMNWVRGNSMFMLQFGIACCSIEMI 70 Query: 71 QASMPRYDLERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSC 129 ++DL+RFG PRASPRQ+DV+IV GT+ +K A ++RVYDQMPEP++V+ MGSC Sbjct: 71 HTYAIKHDLDRFGAGVPRASPRQADVIIVPGTIVSKFAPRMKRVYDQMPEPKFVVGMGSC 130 Query: 130 ANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 GG + Y+V++G + ++PVDI+VPGCPP EALIYGI LQ++IR Sbjct: 131 TISGGPFQEGYNVIKGAEEVIPVDIHVPGCPPRPEALIYGIAKLQERIR 179 >gi|222053571|ref|YP_002535933.1| NADH-quinone oxidoreductase, B subunit [Geobacter sp. FRC-32] gi|238065153|sp|B9LZL8|NUOB_GEOSF RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|221562860|gb|ACM18832.1| NADH-quinone oxidoreductase, B subunit [Geobacter sp. FRC-32] Length = 170 Score = 174 bits (441), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 81/145 (55%), Positives = 107/145 (73%), Gaps = 1/145 (0%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 + S+D LV WAR S+ MTFGLACCA+EMM ++DL+RFG RASPRQ+D +I Sbjct: 11 IVTASLDGLVNWARKTSIWPMTFGLACCAIEMMATGAAKHDLDRFGIIFRASPRQADCII 70 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 +AGT+T KM ++ VY+QMPEP++VI+MG+CA GG + +YSVV+G D +PVD+YVP Sbjct: 71 IAGTVTKKMLPVIKTVYEQMPEPKWVIAMGACACSGGVFD-TYSVVQGIDEALPVDVYVP 129 Query: 158 GCPPTAEALIYGILLLQKKIRRVGN 182 GCPP EAL+YGI+ LQ KI + N Sbjct: 130 GCPPRPEALLYGIMKLQDKIGKERN 154 >gi|257051791|ref|YP_003129624.1| NADH-quinone oxidoreductase, B subunit [Halorhabdus utahensis DSM 12940] gi|256690554|gb|ACV10891.1| NADH-quinone oxidoreductase, B subunit [Halorhabdus utahensis DSM 12940] Length = 231 Score = 174 bits (441), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 78/160 (48%), Positives = 110/160 (68%), Gaps = 2/160 (1%) Query: 20 EKVDADF-SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78 E VD F SR+ + F++T DQ + WAR S+ + FG+ACC++EMM ++D Sbjct: 23 EGVDDRFNSRLREALGSTPFILTKFDQFMNWARGSSMFMLQFGIACCSIEMMHTYSVKHD 82 Query: 79 LERF-GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137 L+RF PRASPRQ+DVMIV GT+ +K A ++RVYDQ+PEP++ I MGSC GG + Sbjct: 83 LDRFHAGVPRASPRQADVMIVPGTIVSKFAPRMKRVYDQVPEPKFTIGMGSCTISGGPFQ 142 Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 Y+VV+G + ++P+DI +PGCPP EALIYG+ LQ++I Sbjct: 143 EGYNVVKGAEEVIPIDIQIPGCPPRPEALIYGVAKLQERI 182 >gi|323345257|ref|ZP_08085480.1| NADH-quinone oxidoreductase subunit B [Prevotella oralis ATCC 33269] gi|323093371|gb|EFZ35949.1| NADH-quinone oxidoreductase subunit B [Prevotella oralis ATCC 33269] Length = 242 Score = 174 bits (441), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 78/161 (48%), Positives = 111/161 (68%), Gaps = 3/161 (1%) Query: 21 KVDADFSRISSEITHKGFLVT--SVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78 K ++ +I E+ G V S+DQ++ W R+ SL +TF +CC +E M RYD Sbjct: 17 KDNSSLEQIVDELHEGGVNVVTGSLDQMINWGRSNSLWSLTFATSCCGIEFMAVGCARYD 76 Query: 79 LERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137 RFGF R SPRQ+D+++ AGT+TNKMA A +R+YD+M EP+YVI++G CA GG + Sbjct: 77 FARFGFEVTRNSPRQADLIMCAGTITNKMAPAFKRLYDEMAEPKYVIAVGGCAISGGPFK 136 Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 SY VVRG D IVPVD+++PGCPP EA++YG++ LQ+K++ Sbjct: 137 SSYHVVRGIDEIVPVDVFIPGCPPRPEAIMYGMMQLQRKVK 177 >gi|117927477|ref|YP_872028.1| NADH dehydrogenase subunit B [Acidothermus cellulolyticus 11B] gi|238065066|sp|A0LRI2|NUOB_ACIC1 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|117647940|gb|ABK52042.1| NADH dehydrogenase subunit B [Acidothermus cellulolyticus 11B] Length = 184 Score = 174 bits (441), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 80/143 (55%), Positives = 109/143 (76%), Gaps = 2/143 (1%) Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95 GFL+T+V++ V W R SL TFGLACCA+EMM RYDL RFG RASPRQ+D+ Sbjct: 10 GFLLTTVEKAVGWVRKSSLWPATFGLACCAIEMMATGAGRYDLARFGMEVFRASPRQADL 69 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155 MIVAG ++ KMA LR++YDQMPEP++V++MG CA+ GG ++ +Y++V+G D +VPVD+Y Sbjct: 70 MIVAGRVSQKMAPVLRQIYDQMPEPKWVLAMGVCASSGGMFN-NYAIVQGVDHVVPVDMY 128 Query: 156 VPGCPPTAEALIYGILLLQKKIR 178 +PGCPP E L++ IL L +KI+ Sbjct: 129 LPGCPPRPEMLMHAILELHEKIK 151 >gi|325067538|ref|ZP_08126211.1| NADH-quinone oxidoreductase, B subunit [Actinomyces oris K20] Length = 207 Score = 174 bits (441), Expect = 6e-42, Method: Compositional matrix adjust. Identities = 81/160 (50%), Positives = 119/160 (74%), Gaps = 2/160 (1%) Query: 21 KVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLE 80 K + ++ ++E+ GFL+T+V++L A+ S+ +T GLACCA+EMM A PR+D+ Sbjct: 17 KRNDPYAAAAAEVDSPGFLLTTVEKLAGLAQARSMWPVTMGLACCAIEMMAAGTPRFDMA 76 Query: 81 RFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS 139 RFG+ RASPR +DVMIV+G +++KMA +R VYD MPEP++VISMG+CA+ GG ++ + Sbjct: 77 RFGWEVFRASPRHADVMIVSGRVSHKMAPIVRNVYDSMPEPKWVISMGACASSGGIFN-N 135 Query: 140 YSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179 Y+VV+GCD IVPVDIY+PGCPP E L+ +L L ++I + Sbjct: 136 YAVVQGCDHIVPVDIYLPGCPPRPEMLLNAMLELTRQIEK 175 >gi|281424343|ref|ZP_06255256.1| NADH dehydrogenase I, B subunit [Prevotella oris F0302] gi|281401612|gb|EFB32443.1| NADH dehydrogenase I, B subunit [Prevotella oris F0302] Length = 240 Score = 174 bits (440), Expect = 7e-42, Method: Compositional matrix adjust. Identities = 75/161 (46%), Positives = 111/161 (68%), Gaps = 3/161 (1%) Query: 21 KVDADFSRISSEITHKGF--LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78 K + +I+ E+ G +V S+DQ + W R+ SL +TFG +CC +E M RYD Sbjct: 17 KDNDSLEKITQELNEGGVNVIVGSLDQAINWGRSNSLWSLTFGTSCCGIEFMAVGCARYD 76 Query: 79 LERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137 RFGF R SPRQ+D+++ AGT+TNKMA +R+YD++ EP+YV+++G C GG + Sbjct: 77 FSRFGFEVTRNSPRQADLIMCAGTITNKMAPVFKRLYDEIAEPKYVVAVGGCTISGGPFK 136 Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 SY+VVRG D +VPVD+Y+PGCPP EA++YG++ LQ+K++ Sbjct: 137 KSYNVVRGIDELVPVDVYIPGCPPRPEAILYGMMQLQRKVK 177 >gi|322370548|ref|ZP_08045106.1| NADH-quinone oxidoreductase, B subunit [Haladaptatus paucihalophilus DX253] gi|320549965|gb|EFW91621.1| NADH-quinone oxidoreductase, B subunit [Haladaptatus paucihalophilus DX253] Length = 220 Score = 174 bits (440), Expect = 7e-42, Method: Compositional matrix adjust. Identities = 75/152 (49%), Positives = 108/152 (71%), Gaps = 1/152 (0%) Query: 27 SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA- 85 S++ + F++T D + W R S+ + FG+ACC++EMM ++DL+RFG Sbjct: 20 SKLREALGTSPFILTKFDAFMNWVRGSSMFMLQFGIACCSIEMMHTYAVKHDLDRFGAGV 79 Query: 86 PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRG 145 PRASPRQ+DV+IV GT+ +K A ++RVYDQMPEP++V+SMGSC GG + Y+V++G Sbjct: 80 PRASPRQADVIIVPGTIVSKFAPRMKRVYDQMPEPKFVVSMGSCTCSGGPFQQGYNVIKG 139 Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 + ++PVDI+VPGCPP EALIYGI LQ++I Sbjct: 140 AEEVIPVDIHVPGCPPRPEALIYGIAKLQERI 171 >gi|269926648|ref|YP_003323271.1| NADH-quinone oxidoreductase, B subunit [Thermobaculum terrenum ATCC BAA-798] gi|269790308|gb|ACZ42449.1| NADH-quinone oxidoreductase, B subunit [Thermobaculum terrenum ATCC BAA-798] Length = 175 Score = 174 bits (440), Expect = 7e-42, Method: Compositional matrix adjust. Identities = 88/148 (59%), Positives = 110/148 (74%), Gaps = 3/148 (2%) Query: 34 THKGFLVTSVDQLV-TWARTGSLMWMTFGLACCAVEMMQASMPRYD-LERFGFAPRASPR 91 +G L+ + + + WAR SL MTFGLACCA+EMM AS YD +ER G R SPR Sbjct: 9 NKRGNLLEATQRAIFGWARKSSLWPMTFGLACCAIEMMSASAANYDVMERSGMLFRPSPR 68 Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151 QSD+MIVAG++T KMA LRR+YDQMP+P++VISMGSCA+ GG Y +YS ++G D++VP Sbjct: 69 QSDLMIVAGSVTLKMAPVLRRLYDQMPDPKWVISMGSCASAGGPYP-TYSHLQGVDKVVP 127 Query: 152 VDIYVPGCPPTAEALIYGILLLQKKIRR 179 VD+YVPGCPP EAL YGIL LQ I+R Sbjct: 128 VDVYVPGCPPVPEALFYGILQLQGMIQR 155 >gi|299140925|ref|ZP_07034063.1| proton-translocating NADH-quinone oxidoreductase, B subunit [Prevotella oris C735] gi|298577891|gb|EFI49759.1| proton-translocating NADH-quinone oxidoreductase, B subunit [Prevotella oris C735] Length = 247 Score = 174 bits (440), Expect = 7e-42, Method: Compositional matrix adjust. Identities = 75/161 (46%), Positives = 111/161 (68%), Gaps = 3/161 (1%) Query: 21 KVDADFSRISSEITHKGF--LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78 K + +I+ E+ G +V S+DQ + W R+ SL +TFG +CC +E M RYD Sbjct: 24 KDNDSLEKITQELNEGGVNVIVGSLDQAINWGRSNSLWSLTFGTSCCGIEFMAVGCARYD 83 Query: 79 LERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137 RFGF R SPRQ+D+++ AGT+TNKMA +R+YD++ EP+YV+++G C GG + Sbjct: 84 FSRFGFEVTRNSPRQADLIMCAGTITNKMAPVFKRLYDEIAEPKYVVAVGGCTISGGPFK 143 Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 SY+VVRG D +VPVD+Y+PGCPP EA++YG++ LQ+K++ Sbjct: 144 KSYNVVRGIDELVPVDVYIPGCPPRPEAILYGMMQLQRKVK 184 >gi|228930306|ref|ZP_04093311.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228982015|ref|ZP_04142308.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors [Bacillus thuringiensis Bt407] gi|229020517|ref|ZP_04177264.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors [Bacillus cereus AH1273] gi|229026735|ref|ZP_04183071.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors [Bacillus cereus AH1272] gi|229033931|ref|ZP_04188885.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors [Bacillus cereus AH1271] gi|229158859|ref|ZP_04286917.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors [Bacillus cereus ATCC 4342] gi|229164245|ref|ZP_04292178.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors [Bacillus cereus R309803] gi|229187525|ref|ZP_04314665.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors [Bacillus cereus BGSC 6E1] gi|229193551|ref|ZP_04320495.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors [Bacillus cereus ATCC 10876] gi|228589856|gb|EEK47731.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors [Bacillus cereus ATCC 10876] gi|228595892|gb|EEK53572.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors [Bacillus cereus BGSC 6E1] gi|228619185|gb|EEK76078.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors [Bacillus cereus R309803] gi|228624843|gb|EEK81612.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors [Bacillus cereus ATCC 4342] gi|228728357|gb|EEL79379.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors [Bacillus cereus AH1271] gi|228734566|gb|EEL85224.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors [Bacillus cereus AH1272] gi|228740788|gb|EEL91039.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors [Bacillus cereus AH1273] gi|228777679|gb|EEM25953.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors [Bacillus thuringiensis Bt407] gi|228829349|gb|EEM74981.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 133 Score = 174 bits (440), Expect = 7e-42, Method: Compositional matrix adjust. Identities = 81/121 (66%), Positives = 97/121 (80%) Query: 58 MTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQM 117 MTFGLACCA+EMM YDL+RFG R SPRQSDVMIV+GT+T KMA +RR+YDQM Sbjct: 1 MTFGLACCAIEMMGVGSSHYDLDRFGSFFRTSPRQSDVMIVSGTVTKKMAPIVRRLYDQM 60 Query: 118 PEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 PEP++VI+MGSCA GG Y SY+VV+G D+IVPVD+Y+PGCPP ALIYGI L++KI Sbjct: 61 PEPKWVIAMGSCATAGGPYVNSYAVVKGVDQIVPVDVYIPGCPPNPAALIYGINKLKEKI 120 Query: 178 R 178 R Sbjct: 121 R 121 >gi|225874130|ref|YP_002755589.1| NADH dehydrogenase I, B subunit [Acidobacterium capsulatum ATCC 51196] gi|225792992|gb|ACO33082.1| NADH dehydrogenase I, B subunit [Acidobacterium capsulatum ATCC 51196] Length = 216 Score = 174 bits (440), Expect = 7e-42, Method: Compositional matrix adjust. Identities = 77/147 (52%), Positives = 109/147 (74%), Gaps = 1/147 (0%) Query: 32 EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASP 90 E++ G T++++L W R S+ +TFGLACCA+EM+ +M RYDL RFG R SP Sbjct: 17 ELSKNGVFTTTLEELYNWGRRSSVWPLTFGLACCAIEMIATTMARYDLARFGAEVFRPSP 76 Query: 91 RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150 RQ+D++IV+GT+T KMA + R+Y+QMPEP+YVI+MG+CA GG + Y+V++G DR + Sbjct: 77 RQADLIIVSGTVTKKMAPQVVRLYNQMPEPKYVIAMGACAISGGPFRDGYNVLKGIDRYI 136 Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKI 177 PVD+++PGCPP EALI+ + LQKKI Sbjct: 137 PVDVHIPGCPPRPEALIHAFMTLQKKI 163 >gi|189426186|ref|YP_001953363.1| NADH-quinone oxidoreductase, B subunit [Geobacter lovleyi SZ] gi|238065152|sp|B3E9W8|NUOB_GEOLS RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|189422445|gb|ACD96843.1| NADH-quinone oxidoreductase, B subunit [Geobacter lovleyi SZ] Length = 169 Score = 174 bits (440), Expect = 7e-42, Method: Compositional matrix adjust. Identities = 80/143 (55%), Positives = 106/143 (74%), Gaps = 1/143 (0%) Query: 40 VTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVA 99 VTS+D+LV W R S+ MTFGLACCA+EMM DL+RFG RASPRQ+D +I+A Sbjct: 13 VTSLDKLVNWVRKSSIWPMTFGLACCAIEMMATGASHNDLDRFGIIFRASPRQADCIIIA 72 Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGC 159 GT+T KM ++ VY+QMPEP++VI+MG+CA GG + +YSVV+G D +PVD+Y+PGC Sbjct: 73 GTVTKKMLPVIQTVYEQMPEPKWVIAMGACACSGGIFD-TYSVVQGIDEALPVDVYIPGC 131 Query: 160 PPTAEALIYGILLLQKKIRRVGN 182 PP EAL+YG++ LQ KI + N Sbjct: 132 PPRPEALLYGLMKLQDKIMQESN 154 >gi|329944203|ref|ZP_08292462.1| NADH-quinone oxidoreductase subunit 6 [Actinomyces sp. oral taxon 170 str. F0386] gi|328530933|gb|EGF57789.1| NADH-quinone oxidoreductase subunit 6 [Actinomyces sp. oral taxon 170 str. F0386] Length = 204 Score = 173 bits (439), Expect = 8e-42, Method: Compositional matrix adjust. Identities = 81/160 (50%), Positives = 119/160 (74%), Gaps = 2/160 (1%) Query: 21 KVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLE 80 K + ++ ++E+ GFL+T+V++L A+ S+ +T GLACCA+EMM A PR+D+ Sbjct: 14 KRNDPYAAAAAEVDSPGFLLTTVERLAGLAQARSMWPVTMGLACCAIEMMAAGTPRFDMA 73 Query: 81 RFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS 139 RFG+ RASPR +DVMIV+G +++KMA +R VYD MPEP++VISMG+CA+ GG ++ + Sbjct: 74 RFGWEVFRASPRHADVMIVSGRVSHKMAPIVRNVYDSMPEPKWVISMGACASSGGIFN-N 132 Query: 140 YSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179 Y+VV+GCD IVPVDIY+PGCPP E L+ +L L ++I + Sbjct: 133 YAVVQGCDHIVPVDIYLPGCPPRPEMLLNAMLELTRQIEK 172 >gi|288801144|ref|ZP_06406600.1| NADH dehydrogenase I, B/C/D subunit protein [Prevotella sp. oral taxon 299 str. F0039] gi|288332078|gb|EFC70560.1| NADH dehydrogenase I, B/C/D subunit protein [Prevotella sp. oral taxon 299 str. F0039] Length = 210 Score = 173 bits (439), Expect = 8e-42, Method: Compositional matrix adjust. Identities = 79/161 (49%), Positives = 110/161 (68%), Gaps = 3/161 (1%) Query: 21 KVDADFSRISSEITHKGFLVT--SVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78 K + +I+ E+ G V S+DQL+ W R+ SL +TF +CC +E M RYD Sbjct: 17 KDNETLEQIAQELHEGGVNVVTGSLDQLINWGRSNSLWSLTFATSCCGIEFMSVGCARYD 76 Query: 79 LERFGF-APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137 RFGF R SPRQ+D+++ AGT+TNKMA +R+YD+M EP+Y+I++G CA GG + Sbjct: 77 FARFGFEVTRNSPRQADLIMCAGTITNKMAPVFKRLYDEMAEPKYIIAIGGCAISGGPFK 136 Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 SY VVRG + IVPVD+YVPGCPP EA++YG++ LQ+KI+ Sbjct: 137 ASYHVVRGINEIVPVDVYVPGCPPRPEAILYGMMQLQRKIK 177 >gi|167630265|ref|YP_001680764.1| proton-translocating NADH-ubiquinone oxidoreductase, chain b [Heliobacterium modesticaldum Ice1] gi|238065157|sp|B0TH78|NUOB_HELMI RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|167593005|gb|ABZ84753.1| proton-translocating NADH-ubiquinone oxidoreductase, chain b [Heliobacterium modesticaldum Ice1] Length = 175 Score = 173 bits (439), Expect = 8e-42, Method: Compositional matrix adjust. Identities = 82/168 (48%), Positives = 118/168 (70%), Gaps = 5/168 (2%) Query: 21 KVDADFSRISS----EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPR 76 ++D + +S E+ K ++TS++ + WAR SL ++ GLACCA+EMM R Sbjct: 2 EIDKNVDTLSEGQVDELIKKNIIMTSLEAVFNWARGNSLWPLSSGLACCAIEMMATGASR 61 Query: 77 YDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY 135 +D+ RFG+ R SPRQ+D++I+AGTLT KMA A++RVY+QMPEP+++I+MGSCA GG Sbjct: 62 FDMARFGYEVFRPSPRQADLIIIAGTLTWKMAPAIQRVYEQMPEPKWIIAMGSCACTGGP 121 Query: 136 YHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 + SY+VV G D+++PVD+YVPGCPP EAL+ G L L+ KI+ V Sbjct: 122 FADSYAVVPGVDKVIPVDVYVPGCPPRPEALLDGFLKLKAKIQNPAKV 169 >gi|301167766|emb|CBW27350.1| NADH dehydrogenase I chain B [Bacteriovorax marinus SJ] Length = 168 Score = 173 bits (439), Expect = 8e-42, Method: Compositional matrix adjust. Identities = 83/141 (58%), Positives = 105/141 (74%), Gaps = 2/141 (1%) Query: 39 LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APRASPRQSDVMI 97 ++ +D W R SL MTFGLACCA+EMM +YDLERFG A A+PR++D+MI Sbjct: 14 VLMKLDDFFNWGRKNSLWPMTFGLACCAIEMMATGASKYDLERFGCGAFMATPRRADLMI 73 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGG-YYHYSYSVVRGCDRIVPVDIYV 156 VAGT+T KMA ++ +Y+QM EP+YVISMGSCAN GG Y+ + Y V++G D IVPVD+YV Sbjct: 74 VAGTVTLKMAPRIKTLYEQMAEPKYVISMGSCANKGGPYWQHGYHVLKGVDEIVPVDVYV 133 Query: 157 PGCPPTAEALIYGILLLQKKI 177 PGCPP EALI G++ LQKKI Sbjct: 134 PGCPPRPEALIEGLMTLQKKI 154 >gi|57234306|ref|YP_181649.1| proton-translocating NADH-quinone oxidoreductase, B subunit [Dehalococcoides ethenogenes 195] gi|123618656|sp|Q3Z800|NUOB_DEHE1 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|57224754|gb|AAW39811.1| proton-translocating NADH-quinone oxidoreductase, B subunit [Dehalococcoides ethenogenes 195] Length = 200 Score = 173 bits (439), Expect = 8e-42, Method: Compositional matrix adjust. Identities = 84/157 (53%), Positives = 114/157 (72%), Gaps = 1/157 (0%) Query: 29 ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-R 87 ++SE G VTSV++++ W+R SL + FGLACCA+EMM + R+DL RFG R Sbjct: 43 LNSEEPPPGVFVTSVEKVLNWSRHYSLWPVMFGLACCAIEMMCMAASRWDLARFGMDIFR 102 Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCD 147 ASPRQ+D+MIVAGTLT KMA L+R+YDQMPEP++V++MG+C GG + SYSVV G + Sbjct: 103 ASPRQADLMIVAGTLTWKMAPWLKRIYDQMPEPKWVLAMGACGTSGGLFRDSYSVVPGFN 162 Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 +VPVD+YVPGCPP EAL+ I+ + +KI + +K Sbjct: 163 MVVPVDVYVPGCPPRPEALLRAIMDIHEKIDKTRIIK 199 >gi|78224544|ref|YP_386291.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit [Geobacter metallireducens GS-15] gi|123570771|sp|Q39QA8|NUOB_GEOMG RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|78195799|gb|ABB33566.1| NADH dehydrogenase subunit B [Geobacter metallireducens GS-15] Length = 170 Score = 173 bits (439), Expect = 9e-42, Method: Compositional matrix adjust. Identities = 79/145 (54%), Positives = 106/145 (73%), Gaps = 1/145 (0%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 F+ S+D LV WAR S+ MTFGLACCA+EMM DL+RFG RASPRQ+D +I Sbjct: 11 FITASLDGLVNWARKSSIWPMTFGLACCAIEMMATGASHNDLDRFGIIFRASPRQADCII 70 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 +AGT+T KM ++ VY+QMPEP++V++MG+CA GG + +YSVV+G D +PVD+Y+P Sbjct: 71 IAGTVTKKMLPVIQTVYEQMPEPKWVVAMGACACSGGVFD-TYSVVQGIDEALPVDVYIP 129 Query: 158 GCPPTAEALIYGILLLQKKIRRVGN 182 GCPP EAL+YG++ LQ KI + N Sbjct: 130 GCPPRPEALLYGLIKLQDKIMKDKN 154 >gi|282891849|ref|ZP_06300329.1| hypothetical protein pah_c198o042 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281498282|gb|EFB40621.1| hypothetical protein pah_c198o042 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 157 Score = 173 bits (439), Expect = 9e-42, Method: Compositional matrix adjust. Identities = 84/142 (59%), Positives = 108/142 (76%), Gaps = 2/142 (1%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVM 96 F+V + +L+ WAR+ SL FGLACCA+EMM A+ RYD+ RFG RASPRQSDVM Sbjct: 11 FIVAPLQKLIDWARSNSLWPAQFGLACCAIEMMSAAASRYDMARFGMEVFRASPRQSDVM 70 Query: 97 IVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV 156 IVAG ++ KMA LR +Y+QM EP++VI+MG CA+ GG Y+ +Y+V+ G D+IVPVD+YV Sbjct: 71 IVAGRVSQKMAPVLRTIYEQMLEPKWVIAMGDCASTGGVYN-NYAVIPGVDQIVPVDVYV 129 Query: 157 PGCPPTAEALIYGILLLQKKIR 178 GCPP EALI G++LLQ KIR Sbjct: 130 AGCPPRPEALIDGLILLQNKIR 151 >gi|229007607|ref|ZP_04165201.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors [Bacillus mycoides Rock1-4] gi|229087789|ref|ZP_04219909.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors [Bacillus cereus Rock3-44] gi|228695517|gb|EEL48382.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors [Bacillus cereus Rock3-44] gi|228753618|gb|EEM03062.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors [Bacillus mycoides Rock1-4] Length = 133 Score = 173 bits (439), Expect = 9e-42, Method: Compositional matrix adjust. Identities = 81/121 (66%), Positives = 97/121 (80%) Query: 58 MTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQM 117 MTFGLACCA+EMM YDL+RFG R SPRQSDVMIV+GT+T KMA +RR+YDQM Sbjct: 1 MTFGLACCAIEMMGVGSSHYDLDRFGSFFRTSPRQSDVMIVSGTVTKKMAPIVRRLYDQM 60 Query: 118 PEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 PEP++VI+MGSCA GG Y SY+VV+G D+IVPVD+Y+PGCPP ALIYGI L++KI Sbjct: 61 PEPKWVIAMGSCATAGGPYVNSYAVVKGVDQIVPVDVYIPGCPPNPAALIYGINKLKEKI 120 Query: 178 R 178 R Sbjct: 121 R 121 >gi|229064950|ref|ZP_04200248.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors [Bacillus cereus AH603] gi|229136115|ref|ZP_04264868.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors [Bacillus cereus BDRD-ST196] gi|229170007|ref|ZP_04297699.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors [Bacillus cereus AH621] gi|228613432|gb|EEK70565.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors [Bacillus cereus AH621] gi|228647274|gb|EEL03356.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors [Bacillus cereus BDRD-ST196] gi|228716251|gb|EEL67963.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors [Bacillus cereus AH603] Length = 133 Score = 173 bits (439), Expect = 9e-42, Method: Compositional matrix adjust. Identities = 81/121 (66%), Positives = 97/121 (80%) Query: 58 MTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQM 117 MTFGLACCA+EMM YDL+RFG R SPRQSDVMIV+GT+T KMA +RR+YDQM Sbjct: 1 MTFGLACCAIEMMGVGSSHYDLDRFGSFFRTSPRQSDVMIVSGTVTKKMAPIVRRLYDQM 60 Query: 118 PEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 PEP++VI+MGSCA GG Y SY+VV+G D+IVPVD+Y+PGCPP ALIYGI L++KI Sbjct: 61 PEPKWVIAMGSCATAGGPYVNSYAVVKGVDQIVPVDVYIPGCPPNPAALIYGINKLKEKI 120 Query: 178 R 178 R Sbjct: 121 R 121 >gi|269794074|ref|YP_003313529.1| NADH dehydrogenase subunit B [Sanguibacter keddieii DSM 10542] gi|269096259|gb|ACZ20695.1| NADH dehydrogenase subunit B [Sanguibacter keddieii DSM 10542] Length = 183 Score = 173 bits (439), Expect = 9e-42, Method: Compositional matrix adjust. Identities = 84/148 (56%), Positives = 111/148 (75%), Gaps = 2/148 (1%) Query: 32 EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASP 90 E GFL+T+V+ L + R GSL +TFGLACCA+EMM A R+DL RFG RASP Sbjct: 4 EEAPSGFLLTTVEDLAGYFRKGSLWPVTFGLACCAIEMMAAGASRFDLSRFGMEVFRASP 63 Query: 91 RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150 RQ+D+MIVAG ++ KMA +R+VYDQMPEP++V+SMG CA+ GG ++ +Y++V+G D IV Sbjct: 64 RQADLMIVAGRVSQKMAPVVRQVYDQMPEPKWVLSMGVCASSGGMFN-NYAIVQGVDHIV 122 Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIR 178 PVDIY+PGCPP E LI IL L ++I+ Sbjct: 123 PVDIYLPGCPPRPEMLINSILALHQQIQ 150 >gi|320532540|ref|ZP_08033350.1| NADH dehydrogenase subunit B [Actinomyces sp. oral taxon 171 str. F0337] gi|320135245|gb|EFW27383.1| NADH dehydrogenase subunit B [Actinomyces sp. oral taxon 171 str. F0337] Length = 204 Score = 173 bits (438), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 80/151 (52%), Positives = 115/151 (76%), Gaps = 2/151 (1%) Query: 30 SSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RA 88 ++E+ GFL+T+V++L A+ S+ +T GLACCA+EMM A PR+D+ RFG+ RA Sbjct: 23 AAEVDSPGFLLTTVEKLAGLAQARSMWPVTMGLACCAIEMMAAGTPRFDMARFGWEVFRA 82 Query: 89 SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 148 SPR +DVMIV+G +++KMA +R VYD MPEP++VISMG+CA+ GG ++ +Y+VV+GCD Sbjct: 83 SPRHADVMIVSGRVSHKMAPIVRNVYDSMPEPKWVISMGACASSGGIFN-NYAVVQGCDH 141 Query: 149 IVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179 IVPVDIY+PGCPP E L+ +L L ++I + Sbjct: 142 IVPVDIYLPGCPPRPEMLLNAMLELTRQIEK 172 >gi|300711699|ref|YP_003737513.1| NADH dehydrogenase-like complex subunit B [Halalkalicoccus jeotgali B3] gi|299125382|gb|ADJ15721.1| NADH dehydrogenase-like complex subunit B [Halalkalicoccus jeotgali B3] Length = 233 Score = 173 bits (438), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 75/158 (47%), Positives = 112/158 (70%), Gaps = 2/158 (1%) Query: 22 VDADF-SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLE 80 VD F SR+ F++T D+ + WAR S+ + FG+ACC++EMM ++DL+ Sbjct: 27 VDNRFNSRLREAFGSSPFILTKFDKFLNWARGSSMFMLQFGIACCSLEMMHTYAVKHDLD 86 Query: 81 RFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS 139 RFG PRASPRQ+D +I+ GT+ +K A ++RVYDQM EP++V++MGSCA GG + Sbjct: 87 RFGSGVPRASPRQADTIIIPGTIVSKFAPRMKRVYDQMAEPKFVVNMGSCAISGGPFQEG 146 Query: 140 YSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 Y+V++G + ++PVDI+VPGCPP EAL+YG++ LQ++I Sbjct: 147 YNVIKGAEEVIPVDIHVPGCPPRPEALVYGVVKLQERI 184 >gi|317503351|ref|ZP_07961398.1| NADH-quinone oxidoreductase subunit B [Prevotella salivae DSM 15606] gi|315665530|gb|EFV05150.1| NADH-quinone oxidoreductase subunit B [Prevotella salivae DSM 15606] Length = 240 Score = 173 bits (438), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 75/161 (46%), Positives = 111/161 (68%), Gaps = 3/161 (1%) Query: 21 KVDADFSRISSEITHKGF--LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78 K + +I+ E+ G +V S+DQ + W R+ SL +TFG +CC +E M RYD Sbjct: 17 KDNDTLEKITKELNEGGVNVIVGSLDQAINWGRSNSLWSLTFGTSCCGIEFMAVGCARYD 76 Query: 79 LERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137 RFGF R SPRQ+D+++ AGT+TNKMA +R+YD++ EP+YV+++G C GG + Sbjct: 77 FSRFGFEVTRNSPRQADLIMCAGTITNKMAPVFKRLYDEIAEPKYVVAVGGCTISGGPFK 136 Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 SY+VVRG D +VPVD+Y+PGCPP EA++YG++ LQ+K++ Sbjct: 137 KSYNVVRGIDELVPVDVYIPGCPPRPEAILYGMMQLQRKVK 177 >gi|29831381|ref|NP_826015.1| NADH dehydrogenase subunit B [Streptomyces avermitilis MA-4680] gi|81718124|sp|Q82DY0|NUOB1_STRAW RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName: Full=NADH dehydrogenase I subunit B 1; AltName: Full=NDH-1 subunit B 1 gi|29608496|dbj|BAC72550.1| putative NADH dehydrogenase I chain B (complex I) [Streptomyces avermitilis MA-4680] Length = 184 Score = 172 bits (437), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 84/149 (56%), Positives = 106/149 (71%), Gaps = 2/149 (1%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RAS 89 E GFL+T+V+Q W R S+ TFGLACCA+EMM RYDL RFG R S Sbjct: 4 EEKLPSGFLLTTVEQAAGWVRKASVFPATFGLACCAIEMMTTGAGRYDLARFGMEVFRGS 63 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQ+D+MIVAG ++ KMA LR+VYDQMP P++VISMG CA+ GG ++ +Y++V+G D I Sbjct: 64 PRQADLMIVAGRVSQKMAPVLRQVYDQMPNPKWVISMGVCASSGGMFN-NYAIVQGVDHI 122 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIR 178 VPVDIY+PGCPP E LI IL L +KI+ Sbjct: 123 VPVDIYLPGCPPRPEMLIDAILKLHQKIQ 151 >gi|159899599|ref|YP_001545846.1| NADH dehydrogenase subunit B [Herpetosiphon aurantiacus ATCC 23779] gi|238065011|sp|A9B4Z5|NUOB1_HERA2 RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName: Full=NADH dehydrogenase I subunit B 1; AltName: Full=NDH-1 subunit B 1 gi|159892638|gb|ABX05718.1| NADH-quinone oxidoreductase, B subunit [Herpetosiphon aurantiacus ATCC 23779] Length = 179 Score = 172 bits (437), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 81/144 (56%), Positives = 108/144 (75%), Gaps = 2/144 (1%) Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95 G + T+++ +V W RT ++ M FGLACCA+EMM YD+ RFG RASPRQ+D+ Sbjct: 11 GIVTTTLEGVVNWGRTKAMWPMLFGLACCAIEMMAGQASNYDMSRFGLELMRASPRQADL 70 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155 MIVAG ++ KMA LRR+YDQMPEP++V++MG CA+ GG Y+ +Y++V+G D IVPVD+Y Sbjct: 71 MIVAGRVSRKMAPVLRRLYDQMPEPKWVVAMGDCASCGGVYN-NYAIVQGVDEIVPVDVY 129 Query: 156 VPGCPPTAEALIYGILLLQKKIRR 179 V GCPP EALI GIL L +KI+R Sbjct: 130 VAGCPPRPEALIDGILQLHEKIKR 153 >gi|320095549|ref|ZP_08027213.1| NADH-quinone oxidoreductase subunit B [Actinomyces sp. oral taxon 178 str. F0338] gi|319977527|gb|EFW09206.1| NADH-quinone oxidoreductase subunit B [Actinomyces sp. oral taxon 178 str. F0338] Length = 184 Score = 172 bits (437), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 80/142 (56%), Positives = 112/142 (78%), Gaps = 2/142 (1%) Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95 G +TSV++++ AR S +T GLACCA+EMM A PR+D+ RFG RASPR SD+ Sbjct: 10 GIALTSVEKVLGLARKHSQWPVTMGLACCAIEMMAAGTPRFDMARFGLEVFRASPRHSDL 69 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155 MIV+G +++KMA +RRVYD MPEP++VISMG+CA+ GG ++ +Y+VV+GCD IVPVD+Y Sbjct: 70 MIVSGRVSHKMAPIIRRVYDSMPEPKWVISMGACASSGGVFN-NYAVVQGCDHIVPVDVY 128 Query: 156 VPGCPPTAEALIYGILLLQKKI 177 +PGCPP EALI+ +L+L+++I Sbjct: 129 LPGCPPRPEALIHAVLVLREQI 150 >gi|55378230|ref|YP_136080.1| NADH dehydrogenase I B subunit [Haloarcula marismortui ATCC 43049] gi|55230955|gb|AAV46374.1| NADH dehydrogenase I B subunit [Haloarcula marismortui ATCC 43049] Length = 230 Score = 172 bits (437), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 72/141 (51%), Positives = 105/141 (74%), Gaps = 1/141 (0%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQSDVM 96 F++T D+ + W R S+ + FG+ACC++EM+ ++DL+RFG PRASPRQ+DV+ Sbjct: 41 FILTKFDKFMNWVRGSSMFMLQFGIACCSIEMIHTYAIKHDLDRFGSGVPRASPRQADVI 100 Query: 97 IVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV 156 IV GT+ +K A ++RVYDQMPEP++V+SMGSC GG + Y+V++G + ++PVDI+V Sbjct: 101 IVPGTIVSKFAPRMKRVYDQMPEPKFVVSMGSCTISGGPFQEGYNVIKGAEEVIPVDIHV 160 Query: 157 PGCPPTAEALIYGILLLQKKI 177 PGCPP EALIYG+ LQ++I Sbjct: 161 PGCPPRPEALIYGVAKLQERI 181 >gi|270308195|ref|YP_003330253.1| NADH-quinone oxidoreductase, B subunit [Dehalococcoides sp. VS] gi|270154087|gb|ACZ61925.1| NADH-quinone oxidoreductase, B subunit [Dehalococcoides sp. VS] Length = 200 Score = 172 bits (437), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 83/157 (52%), Positives = 114/157 (72%), Gaps = 1/157 (0%) Query: 29 ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-R 87 +S + + G +TSV++++ W+R SL + FGLACCA+EMM + R+DL RFG R Sbjct: 43 LSGDESPPGVFITSVEKVLNWSRHYSLWPVMFGLACCAIEMMCMAASRWDLARFGMDIFR 102 Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCD 147 ASPRQ+D+MIVAGTLT KMA LRR+YDQMPEP++V++MG+C GG + SYSVV G + Sbjct: 103 ASPRQADLMIVAGTLTWKMAPWLRRIYDQMPEPKWVLAMGACGTSGGLFRDSYSVVPGFN 162 Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 +VPVD+YVPGCPP EAL+ I+ + +KI + +K Sbjct: 163 LVVPVDVYVPGCPPRPEALMRAIMDIHEKIDKTRIIK 199 >gi|332669450|ref|YP_004452458.1| NADH-quinone oxidoreductase subunit B [Cellulomonas fimi ATCC 484] gi|332338488|gb|AEE45071.1| NADH-quinone oxidoreductase, B subunit [Cellulomonas fimi ATCC 484] Length = 183 Score = 172 bits (436), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 84/148 (56%), Positives = 110/148 (74%), Gaps = 2/148 (1%) Query: 32 EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASP 90 E GFL+T+V+ LV + R GSL +TFGLACCA+EMM A PRYDL RFG RASP Sbjct: 4 EEAPSGFLLTTVEDLVGYFRKGSLWPVTFGLACCAIEMMAAGAPRYDLSRFGMEVFRASP 63 Query: 91 RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150 RQ+D+MIVAG ++ KMA +R+VYDQM P++V+SMG CA+ GG ++ +Y++V+G D +V Sbjct: 64 RQADLMIVAGRVSQKMAPVVRQVYDQMSAPKWVLSMGVCASSGGMFN-NYAIVQGVDHVV 122 Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIR 178 PVDIY+PGCPP E LI IL L +I+ Sbjct: 123 PVDIYLPGCPPRPEMLINAILTLHDQIQ 150 >gi|319950452|ref|ZP_08024366.1| NADH dehydrogenase subunit B [Dietzia cinnamea P4] gi|319435875|gb|EFV91081.1| NADH dehydrogenase subunit B [Dietzia cinnamea P4] Length = 184 Score = 172 bits (436), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 85/151 (56%), Positives = 111/151 (73%), Gaps = 2/151 (1%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RAS 89 E GFL+T+V+QL + R GSL TFGLACCA+EMM S RYDL RFG RAS Sbjct: 4 EEKLPAGFLLTTVEQLAGYMRKGSLWPATFGLACCAIEMMATSGGRYDLARFGTEVFRAS 63 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQ+D+MIVAG ++ KMA LR+VYDQM EP++V+SMG CA+ GG ++ +Y++V+G D I Sbjct: 64 PRQADLMIVAGRVSQKMAPVLRQVYDQMAEPKWVLSMGVCASSGGMFN-NYAIVQGVDHI 122 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 VPVDIY+PGCPP E L++ I+ L KI+ + Sbjct: 123 VPVDIYLPGCPPRPEMLMHAIITLHDKIQNM 153 >gi|227497895|ref|ZP_03928075.1| NADH dehydrogenase (quinone) [Actinomyces urogenitalis DSM 15434] gi|226832687|gb|EEH65070.1| NADH dehydrogenase (quinone) [Actinomyces urogenitalis DSM 15434] Length = 209 Score = 172 bits (436), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 81/144 (56%), Positives = 111/144 (77%), Gaps = 2/144 (1%) Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95 GFL+TSV++L A+ SL +T GLACCA+EMM + PR+DL RFG+ RASPR +DV Sbjct: 35 GFLLTSVEKLSALAQARSLWPVTMGLACCAIEMMATAAPRFDLSRFGWEVFRASPRHADV 94 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155 M+V+G +++KMA +R VYD MPEP++VISMG+CA+ GG ++ +Y++V+GCD IVPVDIY Sbjct: 95 MLVSGRVSHKMAPIVRNVYDAMPEPKWVISMGACASSGGIFN-NYAIVQGCDHIVPVDIY 153 Query: 156 VPGCPPTAEALIYGILLLQKKIRR 179 +PGCPP E LI +L L ++I R Sbjct: 154 LPGCPPRPEMLINAMLELTRQIER 177 >gi|256371181|ref|YP_003109005.1| NADH-quinone oxidoreductase, B subunit [Acidimicrobium ferrooxidans DSM 10331] gi|256007765|gb|ACU53332.1| NADH-quinone oxidoreductase, B subunit [Acidimicrobium ferrooxidans DSM 10331] Length = 180 Score = 172 bits (436), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 83/143 (58%), Positives = 104/143 (72%), Gaps = 2/143 (1%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVM 96 FL ++ LV WAR S+ TFGLACCA+EMM A +DL RFG RASPRQ+D+M Sbjct: 10 FLTARLEDLVNWARKSSVWPATFGLACCAIEMMAAGAADFDLARFGMEVFRASPRQADLM 69 Query: 97 IVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV 156 IVAG ++ KMA LR+VYDQMPEP++VISMG CA+ GG ++ +Y++V+G D IVPVD+Y Sbjct: 70 IVAGRVSQKMAPVLRQVYDQMPEPKWVISMGVCASSGGMFN-NYAIVQGVDEIVPVDVYA 128 Query: 157 PGCPPTAEALIYGILLLQKKIRR 179 PGCPP E LI IL L +KIR Sbjct: 129 PGCPPGPETLIRAILTLHEKIRH 151 >gi|313156901|gb|EFR56339.1| NADH-quinone oxidoreductase, B subunit [Alistipes sp. HGB5] Length = 218 Score = 172 bits (435), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 78/161 (48%), Positives = 113/161 (70%), Gaps = 6/161 (3%) Query: 19 LEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78 LEK+ A+ ++ + +V +D+L+ W R+ SL +TF +CC +E M RYD Sbjct: 23 LEKMVAELRDNNTNV-----IVGCLDELIEWGRSNSLWPLTFATSCCGIEFMAVGAARYD 77 Query: 79 LERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137 RFGF RASPRQ+D ++VAGT+T+KMA LRR+YDQM +P+YVI++G CA GG + Sbjct: 78 FARFGFEVARASPRQADFIMVAGTITHKMAPVLRRLYDQMADPKYVIAVGGCAISGGPFK 137 Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 SY V+ G DRI+PVD+Y+PGCPP EA++YG++ LQ+K++ Sbjct: 138 KSYHVLNGVDRILPVDVYIPGCPPRPEAMLYGLMQLQRKVK 178 >gi|188996814|ref|YP_001931065.1| NADH-quinone oxidoreductase, B subunit [Sulfurihydrogenibium sp. YO3AOP1] gi|238065219|sp|B2V988|NUOB_SULSY RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|188931881|gb|ACD66511.1| NADH-quinone oxidoreductase, B subunit [Sulfurihydrogenibium sp. YO3AOP1] Length = 171 Score = 172 bits (435), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 75/142 (52%), Positives = 109/142 (76%), Gaps = 1/142 (0%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 +T G ++T+V+++++W R SL ++ GLACCA+EMM + R+D +R G R SPRQ Sbjct: 3 MTSSGIILTTVEEVLSWGRRNSLWPVSVGLACCAIEMMHTAASRFDTDRLGIIFRGSPRQ 62 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 SDV+IVAGT+ NK+A LR +Y+QMP+P++VISMG CA+ GG + +Y ++G DRI+PV Sbjct: 63 SDVLIVAGTVVNKVAPMLRLIYEQMPDPKWVISMGGCASAGGPFP-TYPTLQGVDRIIPV 121 Query: 153 DIYVPGCPPTAEALIYGILLLQ 174 D+Y+PGCPPT +AL++GIL LQ Sbjct: 122 DVYIPGCPPTPQALLWGILELQ 143 >gi|291285958|ref|YP_003502774.1| NADH-quinone oxidoreductase, B subunit [Denitrovibrio acetiphilus DSM 12809] gi|290883118|gb|ADD66818.1| NADH-quinone oxidoreductase, B subunit [Denitrovibrio acetiphilus DSM 12809] Length = 158 Score = 172 bits (435), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 79/142 (55%), Positives = 105/142 (73%), Gaps = 1/142 (0%) Query: 36 KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDV 95 + L TS+D ++ + R GS+ +TFGLACCA+EMM ++DL+R G RA+PRQ+D+ Sbjct: 10 ENVLTTSIDNVINYCRKGSIWPVTFGLACCAIEMMATGAAKFDLDRMGIIFRATPRQADL 69 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155 MIVAGT+T KMA +R+VY QMPEP++VI+MGSCA GG Y +YS V+G D ++PVD Y Sbjct: 70 MIVAGTVTRKMAPVVRKVYVQMPEPKWVIAMGSCATSGGIYD-TYSTVQGVDEVIPVDFY 128 Query: 156 VPGCPPTAEALIYGILLLQKKI 177 VPGCPP EAL+ I+ LQ KI Sbjct: 129 VPGCPPRPEALLDAIVALQSKI 150 >gi|328884313|emb|CCA57552.1| NADH-ubiquinone oxidoreductase chain B [Streptomyces venezuelae ATCC 10712] Length = 184 Score = 172 bits (435), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 83/149 (55%), Positives = 106/149 (71%), Gaps = 2/149 (1%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RAS 89 E GFL+T+V+Q W R S+ TFGLACCA+EMM RYDL RFG R S Sbjct: 4 EEKLPSGFLLTTVEQAAGWVRKASVFPATFGLACCAIEMMTTGAGRYDLARFGMEVFRGS 63 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQ+D+MIVAG ++ KMA LR+VYDQMP P++VISMG CA+ GG ++ +Y++V+G D I Sbjct: 64 PRQADLMIVAGRVSQKMAPVLRQVYDQMPNPKWVISMGVCASSGGMFN-NYAIVQGVDHI 122 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIR 178 VPVDIY+PGCPP E L+ IL L +KI+ Sbjct: 123 VPVDIYLPGCPPRPEMLLDAILKLHQKIQ 151 >gi|198276152|ref|ZP_03208683.1| hypothetical protein BACPLE_02341 [Bacteroides plebeius DSM 17135] gi|198270964|gb|EDY95234.1| hypothetical protein BACPLE_02341 [Bacteroides plebeius DSM 17135] Length = 193 Score = 172 bits (435), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 74/143 (51%), Positives = 105/143 (73%), Gaps = 1/143 (0%) Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APRASPRQSDV 95 G ++ +VD+L+ W R+ SL +TFG +CCA+E M RYD+ RFGF R SPRQ+D+ Sbjct: 36 GIVLGTVDELINWGRSNSLWSLTFGTSCCAIEFMALGAARYDMARFGFEVTRNSPRQADM 95 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155 ++V GT+T+KMA L+R+YDQM EP+YV+++G C GG + SY VV G D+I+PVD+Y Sbjct: 96 IMVLGTITHKMAPVLKRLYDQMAEPKYVVAVGGCTISGGPFIKSYHVVNGIDKIIPVDVY 155 Query: 156 VPGCPPTAEALIYGILLLQKKIR 178 +PGCPP EA YG++ LQ+KI+ Sbjct: 156 IPGCPPRPEAFFYGMMQLQRKIK 178 >gi|298246351|ref|ZP_06970157.1| NADH-quinone oxidoreductase, B subunit [Ktedonobacter racemifer DSM 44963] gi|297553832|gb|EFH87697.1| NADH-quinone oxidoreductase, B subunit [Ktedonobacter racemifer DSM 44963] Length = 200 Score = 171 bits (434), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 80/144 (55%), Positives = 110/144 (76%), Gaps = 2/144 (1%) Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95 G L T V +++ W+R+ SL FGLACCA+EMM S R+DL RFG RASPRQ+D+ Sbjct: 32 GVLTTQVSKILDWSRSSSLWPALFGLACCAIEMMSTSASRFDLARFGAEVYRASPRQADL 91 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155 MIVAG + KMA LR++YDQMPEP++VISMG+CA+ GG ++ +Y++V+G D+IVPVD++ Sbjct: 92 MIVAGRCSVKMAPVLRQIYDQMPEPKWVISMGACASCGGVFN-NYAIVQGVDKIVPVDVF 150 Query: 156 VPGCPPTAEALIYGILLLQKKIRR 179 +PGCPPT + L++G LQ+KIR Sbjct: 151 IPGCPPTPDMLLFGFNELQRKIRE 174 >gi|315605129|ref|ZP_07880180.1| NADH-quinone oxidoreductase subunit B [Actinomyces sp. oral taxon 180 str. F0310] gi|315313165|gb|EFU61231.1| NADH-quinone oxidoreductase subunit B [Actinomyces sp. oral taxon 180 str. F0310] Length = 184 Score = 171 bits (434), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 80/142 (56%), Positives = 112/142 (78%), Gaps = 2/142 (1%) Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95 G +TSV++++ AR S +T GLACCA+EMM A PR+D+ RFG RASPR SD+ Sbjct: 10 GIALTSVEKVLGLARKYSQWPVTMGLACCAIEMMAAGTPRFDMARFGLEVFRASPRHSDM 69 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155 MIV+G +++KMA +RRVYD MPEP++VISMG+CA+ GG ++ +Y+VV+GCD IVPVD+Y Sbjct: 70 MIVSGRVSHKMAPIIRRVYDSMPEPKWVISMGACASSGGVFN-NYAVVQGCDHIVPVDVY 128 Query: 156 VPGCPPTAEALIYGILLLQKKI 177 +PGCPP EALI+ +L+L+++I Sbjct: 129 LPGCPPRPEALIHAVLVLREQI 150 >gi|297201624|ref|ZP_06919021.1| NADH dehydrogenase subunit B [Streptomyces sviceus ATCC 29083] gi|197711005|gb|EDY55039.1| NADH dehydrogenase subunit B [Streptomyces sviceus ATCC 29083] Length = 184 Score = 171 bits (434), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 83/149 (55%), Positives = 106/149 (71%), Gaps = 2/149 (1%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RAS 89 E GFL+T+V+Q W R S+ TFGLACCA+EMM RYDL RFG R S Sbjct: 4 EEKLPSGFLLTTVEQAAGWVRKASVFPATFGLACCAIEMMTTGAGRYDLARFGMEVFRGS 63 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQ+D+MIVAG ++ KMA LR+VYDQMP P++VISMG CA+ GG ++ +Y++V+G D I Sbjct: 64 PRQADLMIVAGRVSQKMAPVLRQVYDQMPNPKWVISMGVCASSGGMFN-NYAIVQGVDHI 122 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIR 178 VPVDIY+PGCPP E L+ IL L +KI+ Sbjct: 123 VPVDIYLPGCPPRPEMLMDAILKLHQKIQ 151 >gi|295837124|ref|ZP_06824057.1| NADH-quinone oxidoreductase, B subunit [Streptomyces sp. SPB74] gi|318057842|ref|ZP_07976565.1| NADH dehydrogenase subunit B [Streptomyces sp. SA3_actG] gi|318078940|ref|ZP_07986272.1| NADH dehydrogenase subunit B [Streptomyces sp. SA3_actF] gi|333025118|ref|ZP_08453182.1| putative NADH dehydrogenase subunit B [Streptomyces sp. Tu6071] gi|197697234|gb|EDY44167.1| NADH-quinone oxidoreductase, B subunit [Streptomyces sp. SPB74] gi|332744970|gb|EGJ75411.1| putative NADH dehydrogenase subunit B [Streptomyces sp. Tu6071] Length = 184 Score = 171 bits (434), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 82/149 (55%), Positives = 106/149 (71%), Gaps = 2/149 (1%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RAS 89 E GFL+T+V+Q W R S+ TFGLACCA+EMM RYDL RFG R S Sbjct: 4 EEKLPSGFLLTTVEQAAGWVRKSSMFPATFGLACCAIEMMTTGAGRYDLARFGMEVFRGS 63 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQ+D+MIVAG ++ KMA LR+VYDQMP P++VISMG CA+ GG ++ +Y++V+G D + Sbjct: 64 PRQADLMIVAGRVSQKMAPVLRQVYDQMPNPKWVISMGVCASSGGMFN-NYAIVQGVDHV 122 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIR 178 VPVDIY+PGCPP E LI IL L +K++ Sbjct: 123 VPVDIYLPGCPPRPEMLIDAILKLHQKVQ 151 >gi|313126885|ref|YP_004037155.1| NADH dehydrogenase subunit b [Halogeometricum borinquense DSM 11551] gi|312293250|gb|ADQ67710.1| NADH dehydrogenase subunit B [Halogeometricum borinquense DSM 11551] Length = 236 Score = 171 bits (434), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 77/182 (42%), Positives = 113/182 (62%), Gaps = 11/182 (6%) Query: 7 NQKIISGQSSCSLEKVDADF----------SRISSEITHKGFLVTSVDQLVTWARTGSLM 56 NQ ++ + E DA S++ F++T D + W R S+ Sbjct: 6 NQPFVTDDTQVQTETRDARMTGSGADNRFNSKLREAFGSSPFILTKFDNFMNWVRGSSMF 65 Query: 57 WMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYD 115 + FG+ACC++EMM ++DL+RF PRASPRQ+DV+IV GT+ +K A ++RVYD Sbjct: 66 MLQFGIACCSIEMMHTYSVKHDLDRFAAGVPRASPRQADVIIVPGTIVSKFAPRMKRVYD 125 Query: 116 QMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175 QMPEP++V+ MGSC GG + Y+V++G + ++PVDI+VPGCPP EALIYG+ LQ+ Sbjct: 126 QMPEPKFVVGMGSCTVSGGPFQEGYNVIKGAEEVIPVDIHVPGCPPRPEALIYGVAKLQQ 185 Query: 176 KI 177 +I Sbjct: 186 RI 187 >gi|322435876|ref|YP_004218088.1| NADH-quinone oxidoreductase, B subunit [Acidobacterium sp. MP5ACTX9] gi|321163603|gb|ADW69308.1| NADH-quinone oxidoreductase, B subunit [Acidobacterium sp. MP5ACTX9] Length = 205 Score = 171 bits (434), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 78/144 (54%), Positives = 109/144 (75%), Gaps = 2/144 (1%) Query: 36 KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSD 94 +G ++ S+D + W R S+ MTFGLACCA+EMM RYD+ RFG R SPRQSD Sbjct: 50 EGIVLASLDAAINWVRKNSVWPMTFGLACCAIEMMSMGGSRYDIARFGAEVFRPSPRQSD 109 Query: 95 VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154 +MI+AG ++ KMA +RR+Y+QMPEP++VISMG+CA GG ++ +Y++++G ++I+PVDI Sbjct: 110 LMIIAGRVSQKMAPVIRRLYEQMPEPKWVISMGACATSGGVFN-NYALLQGVNQIIPVDI 168 Query: 155 YVPGCPPTAEALIYGILLLQKKIR 178 YVPGCPP E L+Y I LLQ+KI+ Sbjct: 169 YVPGCPPRPEQLLYAITLLQEKIQ 192 >gi|294630797|ref|ZP_06709357.1| NADH-quinone oxidoreductase, B subunit [Streptomyces sp. e14] gi|292834130|gb|EFF92479.1| NADH-quinone oxidoreductase, B subunit [Streptomyces sp. e14] Length = 184 Score = 171 bits (434), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 83/149 (55%), Positives = 106/149 (71%), Gaps = 2/149 (1%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RAS 89 E GFL+T+V+Q W R S+ TFGLACCA+EMM RYDL RFG R S Sbjct: 4 EEKLPSGFLLTTVEQAAGWVRKASVFPATFGLACCAIEMMTTGAGRYDLARFGMEVFRGS 63 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQ+D+MIVAG ++ KMA LR+VYDQMP P++VISMG CA+ GG ++ +Y++V+G D I Sbjct: 64 PRQADLMIVAGRVSQKMAPVLRQVYDQMPNPKWVISMGVCASSGGMFN-NYAIVQGVDHI 122 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIR 178 VPVDIY+PGCPP E L+ IL L +KI+ Sbjct: 123 VPVDIYLPGCPPRPEMLMDAILKLHQKIQ 151 >gi|290958259|ref|YP_003489441.1| NADH dehydrogenase subunit NuoB [Streptomyces scabiei 87.22] gi|260647785|emb|CBG70890.1| NuoB, NADH dehydrogenase subunit [Streptomyces scabiei 87.22] Length = 184 Score = 171 bits (434), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 83/149 (55%), Positives = 106/149 (71%), Gaps = 2/149 (1%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RAS 89 E GFL+T+V+Q W R S+ TFGLACCA+EMM RYDL RFG R S Sbjct: 4 EEKLPSGFLLTTVEQAAGWVRKASVFPATFGLACCAIEMMTTGAGRYDLARFGMEVFRGS 63 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQ+D+MIVAG ++ KMA LR+VYDQMP P++VISMG CA+ GG ++ +Y++V+G D I Sbjct: 64 PRQADLMIVAGRVSQKMAPVLRQVYDQMPNPKWVISMGVCASSGGMFN-NYAIVQGVDHI 122 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIR 178 VPVDIY+PGCPP E L+ IL L +KI+ Sbjct: 123 VPVDIYLPGCPPRPEMLMDAILKLHQKIQ 151 >gi|284992924|ref|YP_003411478.1| NADH-quinone oxidoreductase subunit B [Geodermatophilus obscurus DSM 43160] gi|284066169|gb|ADB77107.1| NADH-quinone oxidoreductase, B subunit [Geodermatophilus obscurus DSM 43160] Length = 226 Score = 171 bits (434), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 83/148 (56%), Positives = 106/148 (71%), Gaps = 2/148 (1%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RAS 89 E G L+TSV++LV W R SL TFGLACCA+EMM RYDL RFG RAS Sbjct: 4 EEKLPSGVLLTSVEKLVNWTRKSSLWPATFGLACCAIEMMATGAGRYDLARFGMEVFRAS 63 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQ+D+MIVAG ++ KMA LR++YDQMPEPR+V++MG CA+ GG ++ +Y++V+G D + Sbjct: 64 PRQADLMIVAGRVSQKMAPVLRQIYDQMPEPRWVLAMGVCASSGGMFN-NYAIVQGVDHV 122 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKI 177 VPVD+Y+PGCPP E L IL L KI Sbjct: 123 VPVDMYLPGCPPRPEMLTDAILKLHHKI 150 >gi|317123870|ref|YP_004097982.1| NADH dehydrogenase subunit B [Intrasporangium calvum DSM 43043] gi|315587958|gb|ADU47255.1| NADH dehydrogenase subunit B [Intrasporangium calvum DSM 43043] Length = 221 Score = 171 bits (434), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 79/136 (58%), Positives = 102/136 (75%), Gaps = 1/136 (0%) Query: 43 VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA-SPRQSDVMIVAGT 101 + L+ W R SL FGLACCA+E + SM R+D R G P A PRQ+D+MIV+GT Sbjct: 30 IKVLLNWGRRYSLWVFNFGLACCAIEFIATSMARHDFMRLGVIPFAPGPRQADLMIVSGT 89 Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP 161 +T+KMA A+RR+YDQMPEP+YVIS G+CAN GG Y SYSV +G D ++PVD+YVPGCPP Sbjct: 90 VTDKMAPAIRRLYDQMPEPKYVISFGACANSGGPYWDSYSVTKGVDTVIPVDVYVPGCPP 149 Query: 162 TAEALIYGILLLQKKI 177 EAL++GI+ LQ++I Sbjct: 150 RPEALLHGIIRLQEQI 165 >gi|219847965|ref|YP_002462398.1| NADH dehydrogenase subunit B [Chloroflexus aggregans DSM 9485] gi|238065007|sp|B8G705|NUOB1_CHLAD RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName: Full=NADH dehydrogenase I subunit B 1; AltName: Full=NDH-1 subunit B 1 gi|219542224|gb|ACL23962.1| NADH-quinone oxidoreductase, B subunit [Chloroflexus aggregans DSM 9485] Length = 174 Score = 171 bits (434), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 79/152 (51%), Positives = 111/152 (73%), Gaps = 2/152 (1%) Query: 29 ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PR 87 I + + G + T+++ +V W RT ++ + FGLACCA+EMM A YDL RFG R Sbjct: 3 IEEKAGNLGIVTTTLETVVNWGRTNAMWPLLFGLACCAIEMMGAQASNYDLSRFGMELNR 62 Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCD 147 ASPRQ+D+MIVAG ++ KMA +RR+YDQMPEP++VI+MG CA GG ++ +Y++V+G D Sbjct: 63 ASPRQADLMIVAGRVSRKMAPVVRRLYDQMPEPKWVIAMGDCAACGGIFN-NYAIVQGVD 121 Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179 +VPVD+YV GCPP EALI GI++L +K+ R Sbjct: 122 EVVPVDVYVAGCPPRPEALIDGIMMLHQKVMR 153 >gi|163848441|ref|YP_001636485.1| NADH dehydrogenase subunit B [Chloroflexus aurantiacus J-10-fl] gi|222526369|ref|YP_002570840.1| NADH dehydrogenase subunit B [Chloroflexus sp. Y-400-fl] gi|238065028|sp|A9WFB2|NUOB2_CHLAA RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName: Full=NADH dehydrogenase I subunit B 2; AltName: Full=NDH-1 subunit B 2 gi|238065030|sp|B9LAU1|NUOB2_CHLSY RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName: Full=NADH dehydrogenase I subunit B 2; AltName: Full=NDH-1 subunit B 2 gi|163669730|gb|ABY36096.1| NADH-quinone oxidoreductase, B subunit [Chloroflexus aurantiacus J-10-fl] gi|222450248|gb|ACM54514.1| NADH-quinone oxidoreductase, B subunit [Chloroflexus sp. Y-400-fl] Length = 174 Score = 171 bits (433), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 79/152 (51%), Positives = 111/152 (73%), Gaps = 2/152 (1%) Query: 29 ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PR 87 I + + G + T+++ +V W RT ++ + FGLACCA+EMM A YDL RFG R Sbjct: 3 IEEKAGNLGIVTTTLETVVNWGRTNAMWPLLFGLACCAIEMMGAQASNYDLSRFGMELNR 62 Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCD 147 ASPRQ+D+MIVAG ++ KMA +RR+YDQMPEP++VI+MG CA GG ++ +Y++V+G D Sbjct: 63 ASPRQADLMIVAGRVSRKMAPVVRRLYDQMPEPKWVIAMGDCAACGGIFN-NYAIVQGVD 121 Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179 +VPVD+YV GCPP EALI GI++L +K+ R Sbjct: 122 EVVPVDVYVAGCPPRPEALIDGIMMLHQKVMR 153 >gi|328953790|ref|YP_004371124.1| NAD(P)H-quinone oxidoreductase subunit K [Desulfobacca acetoxidans DSM 11109] gi|328454114|gb|AEB09943.1| NAD(P)H-quinone oxidoreductase subunit K [Desulfobacca acetoxidans DSM 11109] Length = 174 Score = 171 bits (433), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 82/145 (56%), Positives = 109/145 (75%), Gaps = 2/145 (1%) Query: 36 KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APRASPRQSD 94 L TS++++V WAR SL TFGLACCA+EM+ + RYD+ RFG A RASPRQ+D Sbjct: 9 NNILTTSLEKMVDWARKNSLWPATFGLACCAIEMIVTAANRYDIARFGMEAFRASPRQAD 68 Query: 95 VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154 +MIVAGT+T KM A+ R+Y+QM EP++VI+MG+CA+ GG + SY+VV+G D+ +PVD+ Sbjct: 69 LMIVAGTVTKKMVPAVVRIYEQMTEPKWVIAMGACASSGGIFR-SYAVVQGIDQYLPVDV 127 Query: 155 YVPGCPPTAEALIYGILLLQKKIRR 179 YVPGCPP E L+YGIL L KI + Sbjct: 128 YVPGCPPRPEGLLYGILKLHDKILK 152 >gi|297192787|ref|ZP_06910185.1| NADH dehydrogenase subunit B (NuoB) [Streptomyces pristinaespiralis ATCC 25486] gi|197721026|gb|EDY64934.1| NADH dehydrogenase subunit B (NuoB) [Streptomyces pristinaespiralis ATCC 25486] Length = 184 Score = 171 bits (433), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 83/149 (55%), Positives = 106/149 (71%), Gaps = 2/149 (1%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RAS 89 E GFL+T+V+Q W R S+ TFGLACCA+EMM RYDL RFG R S Sbjct: 4 EEKLPSGFLLTTVEQAAGWVRKSSVFPATFGLACCAIEMMTTGAGRYDLARFGMEVFRGS 63 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQ+D+MIVAG ++ KMA LR+VYDQMP P++VISMG CA+ GG ++ +Y++V+G D I Sbjct: 64 PRQADLMIVAGRVSQKMAPVLRQVYDQMPNPKWVISMGVCASSGGMFN-NYAIVQGVDHI 122 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIR 178 VPVDIY+PGCPP E L+ IL L +KI+ Sbjct: 123 VPVDIYLPGCPPRPEMLMDAILKLHQKIQ 151 >gi|254391138|ref|ZP_05006345.1| NADH dehydrogenase beta subunit [Streptomyces clavuligerus ATCC 27064] gi|294814395|ref|ZP_06773038.1| NADH-quinone oxidoreductase subunit B [Streptomyces clavuligerus ATCC 27064] gi|326442785|ref|ZP_08217519.1| NADH dehydrogenase subunit B [Streptomyces clavuligerus ATCC 27064] gi|197704832|gb|EDY50644.1| NADH dehydrogenase beta subunit [Streptomyces clavuligerus ATCC 27064] gi|294326994|gb|EFG08637.1| NADH-quinone oxidoreductase subunit B [Streptomyces clavuligerus ATCC 27064] Length = 184 Score = 171 bits (433), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 83/149 (55%), Positives = 106/149 (71%), Gaps = 2/149 (1%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RAS 89 E GFL+T+V+Q W R S+ TFGLACCA+EMM RYDL RFG R S Sbjct: 4 EEKLPSGFLLTTVEQAAGWVRKASVFPATFGLACCAIEMMTTGAGRYDLARFGMEVFRGS 63 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQ+D+MIVAG ++ KMA LR+VYDQMP P++VISMG CA+ GG ++ +Y++V+G D I Sbjct: 64 PRQADLMIVAGRVSQKMAPVLRQVYDQMPNPKWVISMGVCASSGGMFN-NYAIVQGVDHI 122 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIR 178 VPVDIY+PGCPP E L+ IL L +KI+ Sbjct: 123 VPVDIYLPGCPPRPEMLMDAILKLHQKIQ 151 >gi|304382881|ref|ZP_07365364.1| NADH-quinone oxidoreductase subunit B [Prevotella marshii DSM 16973] gi|304336066|gb|EFM02313.1| NADH-quinone oxidoreductase subunit B [Prevotella marshii DSM 16973] Length = 207 Score = 171 bits (433), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 81/181 (44%), Positives = 117/181 (64%), Gaps = 7/181 (3%) Query: 1 MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWM 58 MG+ N K I + K + +I+ E+ G ++ ++D L+ W R+ SL + Sbjct: 1 MGMKKPNIKSIPYKEF----KDNESLEKIAQELHEGGTNVVLGTLDDLINWGRSNSLWSL 56 Query: 59 TFGLACCAVEMMQASMPRYDLERFGF-APRASPRQSDVMIVAGTLTNKMASALRRVYDQM 117 TF +CC +E M RYD RFGF R SPRQ+D+++ AGT+TNKMA +R+YD+M Sbjct: 57 TFATSCCGIEFMSVGCARYDFARFGFEVTRNSPRQADLIMCAGTITNKMAPVFKRLYDEM 116 Query: 118 PEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 EP+YVI++G CA GG + SY VVRG + IVPVD+Y+PGCPP EA++YG++ LQ+KI Sbjct: 117 AEPKYVIAVGGCAISGGPFKSSYHVVRGINEIVPVDVYIPGCPPRPEAILYGMMQLQRKI 176 Query: 178 R 178 + Sbjct: 177 K 177 >gi|239929613|ref|ZP_04686566.1| NADH dehydrogenase subunit B [Streptomyces ghanaensis ATCC 14672] gi|291437937|ref|ZP_06577327.1| NuoB [Streptomyces ghanaensis ATCC 14672] gi|291340832|gb|EFE67788.1| NuoB [Streptomyces ghanaensis ATCC 14672] Length = 184 Score = 171 bits (433), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 82/149 (55%), Positives = 106/149 (71%), Gaps = 2/149 (1%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RAS 89 E GFL+T+V+Q W R S+ TFGLACCA+EMM RYDL RFG R S Sbjct: 4 EEKLPSGFLLTTVEQAAGWVRKSSVFPATFGLACCAIEMMTTGAGRYDLARFGMEVFRGS 63 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQ+D+MIVAG ++ KMA LR+VYDQMP P++VISMG CA+ GG ++ +Y++V+G D + Sbjct: 64 PRQADLMIVAGRVSQKMAPVLRQVYDQMPNPKWVISMGVCASSGGMFN-NYAIVQGVDHV 122 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIR 178 VPVDIY+PGCPP E L+ IL L +KI+ Sbjct: 123 VPVDIYLPGCPPRPEMLLDAILKLHQKIQ 151 >gi|302559106|ref|ZP_07311448.1| NADH-quinone oxidoreductase, B subunit [Streptomyces griseoflavus Tu4000] gi|302476724|gb|EFL39817.1| NADH-quinone oxidoreductase, B subunit [Streptomyces griseoflavus Tu4000] Length = 184 Score = 171 bits (433), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 82/149 (55%), Positives = 106/149 (71%), Gaps = 2/149 (1%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RAS 89 E GFL+T+V+Q W R S+ TFGLACCA+EMM RYDL RFG R S Sbjct: 4 EEKLPSGFLLTTVEQAAGWVRKSSMFPATFGLACCAIEMMTTGAGRYDLARFGMEVFRGS 63 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQ+D+MIVAG ++ KMA LR+VYDQMP P++VISMG CA+ GG ++ +Y++V+G D + Sbjct: 64 PRQADLMIVAGRVSQKMAPVLRQVYDQMPNPKWVISMGVCASSGGMFN-NYAIVQGVDHV 122 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIR 178 VPVDIY+PGCPP E L+ IL L +KI+ Sbjct: 123 VPVDIYLPGCPPRPEMLMDAILKLHQKIQ 151 >gi|73748692|ref|YP_307931.1| proton-translocating NADH-quinone oxidoreductase, B subunit [Dehalococcoides sp. CBDB1] gi|289432718|ref|YP_003462591.1| NADH-quinone oxidoreductase subunit beta [Dehalococcoides sp. GT] gi|123619736|sp|Q3ZXS0|NUOB_DEHSC RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|73660408|emb|CAI83015.1| proton-translocating NADH-quinone oxidoreductase, B subunit [Dehalococcoides sp. CBDB1] gi|288946438|gb|ADC74135.1| NADH-quinone oxidoreductase, B subunit [Dehalococcoides sp. GT] Length = 200 Score = 171 bits (433), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 87/180 (48%), Positives = 121/180 (67%), Gaps = 5/180 (2%) Query: 6 VNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACC 65 V Q +G +S + D ++ E G +TSV++++ W+R SL + FGLACC Sbjct: 24 VIQSFRTGHTSPYPDPADW----LNGEEPPPGVFITSVEKVLNWSRHYSLWPVMFGLACC 79 Query: 66 AVEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 A+EMM + R+DL RFG RASPRQ+D+MIVAGTLT KMA L+R+YDQMPEP++V+ Sbjct: 80 AIEMMCMAASRWDLARFGMDIFRASPRQADLMIVAGTLTWKMAPWLKRIYDQMPEPKWVL 139 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 +MG+C GG + SYSVV G + +VPVD+YVPGCPP EAL+ I+ + +KI + +K Sbjct: 140 AMGACGTSGGLFRDSYSVVPGFNLVVPVDVYVPGCPPRPEALMRAIMDIHEKIDKTRILK 199 >gi|292655139|ref|YP_003535036.1| NADH dehydrogenase-like complex subunit B [Haloferax volcanii DS2] gi|291372435|gb|ADE04662.1| NADH dehydrogenase-like complex subunit B [Haloferax volcanii DS2] Length = 233 Score = 171 bits (433), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 72/152 (47%), Positives = 106/152 (69%), Gaps = 1/152 (0%) Query: 27 SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA- 85 S++ F++T D+ + W R S+ + FG+ACC++EMM ++DL+RF Sbjct: 33 SKLREAFGSSPFILTKFDKFMNWVRGSSMFMLQFGIACCSIEMMHTYSVKHDLDRFAAGV 92 Query: 86 PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRG 145 PRASPRQ+DV+IV GT+ +K A ++RVYDQMPEP++V+ MGSC GG + Y+V++G Sbjct: 93 PRASPRQADVIIVPGTIVSKFAPRMKRVYDQMPEPKFVVGMGSCTISGGPFQEGYNVIKG 152 Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 + ++PVDI++PGCPP EALIYGI LQ++I Sbjct: 153 AEEVIPVDIHIPGCPPRPEALIYGIAKLQERI 184 >gi|189459784|ref|ZP_03008569.1| hypothetical protein BACCOP_00413 [Bacteroides coprocola DSM 17136] gi|189433513|gb|EDV02498.1| hypothetical protein BACCOP_00413 [Bacteroides coprocola DSM 17136] Length = 200 Score = 171 bits (432), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 77/156 (49%), Positives = 108/156 (69%), Gaps = 3/156 (1%) Query: 26 FSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFG 83 R+ E+ G ++ +VDQL+ W R+ SL +TFG +CCA+E M RYD+ RFG Sbjct: 22 LQRMVDELNRDGAGVVIGTVDQLIEWGRSNSLWSLTFGTSCCAIEFMALGAARYDMARFG 81 Query: 84 F-APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142 F R SPRQ+D+++V GT+T KMA L+R+YDQM EP+YV+++G C GG + SY V Sbjct: 82 FEVTRNSPRQADMIMVLGTITYKMAPVLKRLYDQMAEPKYVVAVGGCTISGGPFIKSYHV 141 Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 V G D+I+PVD+Y+PGCPP EA YG++ LQ+KI+ Sbjct: 142 VNGIDKIIPVDVYIPGCPPRPEAFYYGMMQLQRKIK 177 >gi|325280124|ref|YP_004252666.1| NAD(P)H-quinone oxidoreductase subunit K [Odoribacter splanchnicus DSM 20712] gi|324311933|gb|ADY32486.1| NAD(P)H-quinone oxidoreductase subunit K [Odoribacter splanchnicus DSM 20712] Length = 201 Score = 171 bits (432), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 77/141 (54%), Positives = 103/141 (73%), Gaps = 1/141 (0%) Query: 39 LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APRASPRQSDVMI 97 +V +D L+ W R+ S+ +TF +CC +E M RYD RFGF RASPRQ+DV+I Sbjct: 31 IVGCLDDLINWGRSNSVWPLTFATSCCGIEFMAVGAARYDFARFGFEVTRASPRQADVII 90 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGT+ KMA LRR+YDQM EP+YVI+MG CA GG + SY VV+G ++I+PVD+YVP Sbjct: 91 VAGTIVYKMAPVLRRLYDQMAEPKYVIAMGGCAISGGPFKKSYHVVKGVNQILPVDVYVP 150 Query: 158 GCPPTAEALIYGILLLQKKIR 178 GCPP E+L+YG++ LQ+KI+ Sbjct: 151 GCPPRPESLLYGMMQLQRKIK 171 >gi|311897891|dbj|BAJ30299.1| putative NADH-quinone oxidoreductase subunit B [Kitasatospora setae KM-6054] Length = 184 Score = 171 bits (432), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 82/144 (56%), Positives = 104/144 (72%), Gaps = 2/144 (1%) Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95 GFL+TSV+ W R SL TFGLACCA+EMM RYDL RFG R SPRQ+D+ Sbjct: 10 GFLLTSVEAAAGWVRKASLFPATFGLACCAIEMMTTGAGRYDLARFGMEVFRGSPRQADL 69 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155 MIVAG ++ KMA LR+VYDQMP P++VISMG CA+ GG ++ +Y++V+G D IVPVDIY Sbjct: 70 MIVAGRVSQKMAPVLRQVYDQMPNPKWVISMGVCASSGGMFN-NYAIVQGVDHIVPVDIY 128 Query: 156 VPGCPPTAEALIYGILLLQKKIRR 179 +PGCPP E L+ I+ L +KI+ Sbjct: 129 LPGCPPRPEMLLDAIIKLHEKIQH 152 >gi|289641426|ref|ZP_06473590.1| NADH-quinone oxidoreductase, B subunit [Frankia symbiont of Datisca glomerata] gi|289508762|gb|EFD29697.1| NADH-quinone oxidoreductase, B subunit [Frankia symbiont of Datisca glomerata] Length = 267 Score = 171 bits (432), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 80/142 (56%), Positives = 107/142 (75%), Gaps = 2/142 (1%) Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95 G L+T+V+++ W+R SL TFGLACCA+EMM RYDL RFG RASPRQ+D+ Sbjct: 10 GLLLTTVEKMANWSRRSSLWPATFGLACCAIEMMSTGAGRYDLARFGMEVFRASPRQADL 69 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155 MIVAG ++ KMA LR++YDQMPEP++V+SMG CA+ GG ++ +Y++V+G D IVPVD+Y Sbjct: 70 MIVAGRVSQKMAPVLRQIYDQMPEPKWVLSMGVCASSGGMFN-NYAIVQGVDHIVPVDMY 128 Query: 156 VPGCPPTAEALIYGILLLQKKI 177 +PGCPP E L+ IL L +KI Sbjct: 129 LPGCPPRPEMLMDAILKLHEKI 150 >gi|291515382|emb|CBK64592.1| NADH dehydrogenase subunit B [Alistipes shahii WAL 8301] Length = 218 Score = 171 bits (432), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 76/156 (48%), Positives = 109/156 (69%), Gaps = 3/156 (1%) Query: 26 FSRISSEITHKGFLVTS--VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFG 83 ++ E+ G V + +D+++ W R+ SL +TF +CC +E M RYD RFG Sbjct: 22 LEQMVRELRENGTHVVAGCLDEVINWGRSNSLWPLTFATSCCGIEFMAVGAARYDFARFG 81 Query: 84 FA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142 F RASPRQ+D ++VAGT+T+KMA LRR+YDQM +P+YVI++G CA GG + SY V Sbjct: 82 FEVARASPRQADFIMVAGTITHKMAPVLRRLYDQMADPKYVIAVGGCAISGGPFKKSYHV 141 Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 V G DRI+PVD+Y+PGCPP EA++YG++ LQ+K++ Sbjct: 142 VNGVDRILPVDVYIPGCPPRPEAMLYGLMQLQRKVK 177 >gi|320009203|gb|ADW04053.1| NADH-quinone oxidoreductase, B subunit [Streptomyces flavogriseus ATCC 33331] Length = 184 Score = 171 bits (432), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 83/149 (55%), Positives = 106/149 (71%), Gaps = 2/149 (1%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RAS 89 E GF++T+V+Q W R S+ TFGLACCA+EMM RYDL RFG R S Sbjct: 4 EEKLPSGFVLTTVEQAAGWVRKSSVFPATFGLACCAIEMMTTGAGRYDLARFGMEVFRGS 63 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQ+D+MIVAG ++ KMA LR+VYDQMP P++VISMG CA+ GG ++ +Y++V+G D I Sbjct: 64 PRQADLMIVAGRVSQKMAPVLRQVYDQMPSPKWVISMGVCASSGGMFN-NYAIVQGVDHI 122 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIR 178 VPVDIY+PGCPP E LI IL L +KI+ Sbjct: 123 VPVDIYLPGCPPRPEMLIDAILKLHQKIQ 151 >gi|284034118|ref|YP_003384049.1| NADH-quinone oxidoreductase subunit B [Kribbella flavida DSM 17836] gi|283813411|gb|ADB35250.1| NADH-quinone oxidoreductase, B subunit [Kribbella flavida DSM 17836] Length = 178 Score = 171 bits (432), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 81/136 (59%), Positives = 102/136 (75%), Gaps = 1/136 (0%) Query: 43 VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS-PRQSDVMIVAGT 101 V L+ W R SL FGLACCA+E + ASM R+D R G P A PRQ+D+M+V+GT Sbjct: 19 VRYLLNWGRKYSLWVFNFGLACCAIEFIAASMGRHDFIRLGVIPFAPGPRQADLMVVSGT 78 Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP 161 +T+KMA A++R+YDQMPEP+YVIS GSC+N GG Y SY V +G D+I+PVD+YVPGCPP Sbjct: 79 VTDKMAPAIKRLYDQMPEPKYVISFGSCSNSGGPYWDSYCVTKGVDQIIPVDVYVPGCPP 138 Query: 162 TAEALIYGILLLQKKI 177 EAL+ GIL LQ+KI Sbjct: 139 RPEALLQGILKLQEKI 154 >gi|21222946|ref|NP_628725.1| NADH dehydrogenase subunit B [Streptomyces coelicolor A3(2)] gi|256785940|ref|ZP_05524371.1| NADH dehydrogenase subunit B [Streptomyces lividans TK24] gi|329935996|ref|ZP_08285796.1| NADH dehydrogenase subunit B [Streptomyces griseoaurantiacus M045] gi|81625663|sp|Q9XAQ5|NUOB1_STRCO RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName: Full=NADH dehydrogenase I subunit B 1; AltName: Full=NDH-1 subunit B 1 gi|5042276|emb|CAB44530.1| NuoB, NADH dehydrogenase subunit [Streptomyces coelicolor A3(2)] gi|329304474|gb|EGG48352.1| NADH dehydrogenase subunit B [Streptomyces griseoaurantiacus M045] Length = 184 Score = 171 bits (432), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 82/149 (55%), Positives = 106/149 (71%), Gaps = 2/149 (1%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RAS 89 E GFL+T+V+Q W R S+ TFGLACCA+EMM RYDL RFG R S Sbjct: 4 EEKLPSGFLLTTVEQAAGWVRKSSVFPATFGLACCAIEMMTTGAGRYDLARFGMEVFRGS 63 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQ+D+MIVAG ++ KMA LR+VYDQMP P++VISMG CA+ GG ++ +Y++V+G D + Sbjct: 64 PRQADLMIVAGRVSQKMAPVLRQVYDQMPNPKWVISMGVCASSGGMFN-NYAIVQGVDHV 122 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIR 178 VPVDIY+PGCPP E L+ IL L +KI+ Sbjct: 123 VPVDIYLPGCPPRPEMLMDAILKLHQKIQ 151 >gi|167752198|ref|ZP_02424325.1| hypothetical protein ALIPUT_00440 [Alistipes putredinis DSM 17216] gi|167660439|gb|EDS04569.1| hypothetical protein ALIPUT_00440 [Alistipes putredinis DSM 17216] Length = 219 Score = 171 bits (432), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 73/137 (53%), Positives = 102/137 (74%), Gaps = 1/137 (0%) Query: 43 VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQSDVMIVAGT 101 +D+++ W R+ SL +TF +CC +E M RYD RFGF RASPRQ+D ++VAGT Sbjct: 41 LDEVINWGRSNSLWPLTFATSCCGIEFMAVGAARYDFARFGFEVARASPRQADFIMVAGT 100 Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP 161 +T+KMA LRR+YDQM +P+YVI+ GSCA GG + SY VV G D+I+PVD+Y+PGCPP Sbjct: 101 ITHKMAPVLRRLYDQMADPKYVIATGSCAVSGGPFKKSYHVVNGVDKILPVDVYIPGCPP 160 Query: 162 TAEALIYGILLLQKKIR 178 EA++YG++ LQ+K++ Sbjct: 161 RPEAMLYGMMQLQRKVK 177 >gi|116622878|ref|YP_825034.1| NADH-quinone oxidoreductase subunit B [Candidatus Solibacter usitatus Ellin6076] gi|122253898|sp|Q020B6|NUOB1_SOLUE RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName: Full=NADH dehydrogenase I subunit B 1; AltName: Full=NDH-1 subunit B 1 gi|116226040|gb|ABJ84749.1| NADH-quinone oxidoreductase, B subunit [Candidatus Solibacter usitatus Ellin6076] Length = 188 Score = 171 bits (432), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 78/144 (54%), Positives = 109/144 (75%), Gaps = 2/144 (1%) Query: 35 HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQS 93 + F+ T+VD + WAR +L +TFGLACCA+EM+ +S R+D+ RFG R SPRQS Sbjct: 10 EQNFITTNVDHVFNWARKSALWPLTFGLACCAIEMIASSTSRFDIARFGAEVFRPSPRQS 69 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD 153 D+MIVAGT+T KMA L+R++DQMP+P++ ISMG+C++ GG ++ +Y+V++G D+IVPVD Sbjct: 70 DLMIVAGTVTLKMAPVLKRIWDQMPDPKWCISMGACSSVGGPFN-TYAVLQGVDKIVPVD 128 Query: 154 IYVPGCPPTAEALIYGILLLQKKI 177 +YV GCPP E L Y +L LQ KI Sbjct: 129 VYVTGCPPRPENLFYALLKLQDKI 152 >gi|302536169|ref|ZP_07288511.1| NADH dehydrogenase subunit B [Streptomyces sp. C] gi|302445064|gb|EFL16880.1| NADH dehydrogenase subunit B [Streptomyces sp. C] Length = 184 Score = 171 bits (432), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 83/149 (55%), Positives = 106/149 (71%), Gaps = 2/149 (1%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RAS 89 E GFL+T+V+Q W R S+ TFGLACCA+EMM RYDL RFG R S Sbjct: 4 EEKLPSGFLLTTVEQAAGWVRKSSVFPATFGLACCAIEMMTTGAGRYDLARFGMEVFRGS 63 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQ+D+MIVAG ++ KMA LR+VYDQMP P++VISMG CA+ GG ++ +Y++V+G D I Sbjct: 64 PRQADLMIVAGRVSQKMAPVLRQVYDQMPAPKWVISMGVCASSGGMFN-NYAIVQGVDHI 122 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIR 178 VPVDIY+PGCPP E L+ IL L +KI+ Sbjct: 123 VPVDIYLPGCPPRPEMLMDAILKLHQKIQ 151 >gi|330465203|ref|YP_004402946.1| NADH dehydrogenase subunit B [Verrucosispora maris AB-18-032] gi|328808174|gb|AEB42346.1| NADH dehydrogenase subunit B [Verrucosispora maris AB-18-032] Length = 225 Score = 171 bits (432), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 81/142 (57%), Positives = 109/142 (76%), Gaps = 2/142 (1%) Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95 G L+TSV++LV W+R S+ TFGLACCA+EMM A P YD+ R+G RASPRQ+D+ Sbjct: 10 GVLLTSVEKLVNWSRKSSVWGATFGLACCAIEMMAAGGPHYDMGRWGMEVFRASPRQADL 69 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155 MIVAG ++ KMA LR++YDQM EPR+V+SMG CA+ GG ++ +Y++V+G D +VPVD+Y Sbjct: 70 MIVAGRVSQKMAPVLRQIYDQMAEPRWVLSMGVCASSGGMFN-NYAIVQGVDHVVPVDMY 128 Query: 156 VPGCPPTAEALIYGILLLQKKI 177 +PGCPP E LI IL L++KI Sbjct: 129 LPGCPPRPEMLIDAILKLREKI 150 >gi|238062212|ref|ZP_04606921.1| NADH-quinone oxidoreductase, B subunit [Micromonospora sp. ATCC 39149] gi|237884023|gb|EEP72851.1| NADH-quinone oxidoreductase, B subunit [Micromonospora sp. ATCC 39149] Length = 225 Score = 171 bits (432), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 82/142 (57%), Positives = 109/142 (76%), Gaps = 2/142 (1%) Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95 G L+TSV++LV W+R S+ TFGLACCA+EMM A P YD+ R+G RASPRQ+D+ Sbjct: 10 GVLLTSVEKLVNWSRKSSVWGATFGLACCAIEMMAAGGPHYDMGRWGMEVFRASPRQADL 69 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155 MIVAG ++ KMA LR++YDQM EPR+V+SMG CA+ GG ++ +Y++V+G D IVPVD+Y Sbjct: 70 MIVAGRVSQKMAPVLRQIYDQMAEPRWVLSMGVCASSGGMFN-NYAIVQGVDHIVPVDMY 128 Query: 156 VPGCPPTAEALIYGILLLQKKI 177 +PGCPP E LI IL L++KI Sbjct: 129 LPGCPPRPEMLIDAILKLREKI 150 >gi|268317701|ref|YP_003291420.1| NADH-quinone oxidoreductase, B subunit [Rhodothermus marinus DSM 4252] gi|262335235|gb|ACY49032.1| NADH-quinone oxidoreductase, B subunit [Rhodothermus marinus DSM 4252] Length = 194 Score = 171 bits (432), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 80/144 (55%), Positives = 110/144 (76%), Gaps = 2/144 (1%) Query: 36 KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APRASPRQSD 94 +GFL T +D L+ WAR+ SLM M GLACCA+EMM + P+YD+ RFG A R SPRQ+D Sbjct: 6 EGFLTTRLDVLLNWARSNSLMPMPMGLACCAIEMMAFAGPKYDVARFGSEAMRFSPRQAD 65 Query: 95 VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154 +MIVAG + KMA A+RRV+DQMP+P++ I+MG+CA+ GG H Y VV+G D +PVD+ Sbjct: 66 LMIVAGWCSYKMAHAIRRVWDQMPDPKWCIAMGACASTGG-MHRCYGVVQGVDNFLPVDV 124 Query: 155 YVPGCPPTAEALIYGILLLQKKIR 178 Y+PGCPP EA+++ ++ +Q+KIR Sbjct: 125 YIPGCPPRPEAVLHALMDIQEKIR 148 >gi|147669451|ref|YP_001214269.1| NADH-quinone oxidoreductase, B subunit [Dehalococcoides sp. BAV1] gi|238055291|sp|A5FQY4|NUOB_DEHSB RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|146270399|gb|ABQ17391.1| NADH dehydrogenase subunit B [Dehalococcoides sp. BAV1] Length = 200 Score = 170 bits (431), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 87/180 (48%), Positives = 121/180 (67%), Gaps = 5/180 (2%) Query: 6 VNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACC 65 V Q +G +S + D ++ E G +TSV++++ W+R SL + FGLACC Sbjct: 24 VIQSFRTGHTSPYPDPADW----LNGEEPPPGVFITSVEKVLNWSRHYSLWPVMFGLACC 79 Query: 66 AVEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 A+EMM + R+DL RFG RASPRQ+D+MIVAGTLT KMA L+R+YDQMPEP++V+ Sbjct: 80 AIEMMCMAASRWDLARFGMDIFRASPRQADLMIVAGTLTWKMAPWLKRIYDQMPEPKWVL 139 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 +MG+C GG + SYSVV G + +VPVD+YVPGCPP EAL+ I+ + +KI + +K Sbjct: 140 AMGACGTSGGLFRDSYSVVPGFNLVVPVDVYVPGCPPRPEALMRAIMDIHEKIDKTCILK 199 >gi|307696866|gb|ADN85879.1| NADH-ubiquinone oxidoreductase subunit 10 [Nyctotherus ovalis] Length = 155 Score = 170 bits (431), Expect = 7e-41, Method: Compositional matrix adjust. Identities = 73/128 (57%), Positives = 100/128 (78%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 FL T L++WAR G++ +TFGLACCA+EMM + RYD++RFGF R SPR D +I Sbjct: 4 FLTTRSTALISWARGGAMWPLTFGLACCAIEMMHMTASRYDMDRFGFLFRPSPRHVDFLI 63 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 ++GT+T KM+ ++R+Y Q+ +P++VISMGSCAN GG Y+YSY+VVRG D I+PVD+Y+P Sbjct: 64 ISGTVTYKMSYTVKRLYSQLLDPKWVISMGSCANTGGLYYYSYAVVRGVDNIIPVDVYIP 123 Query: 158 GCPPTAEA 165 GCPP AE+ Sbjct: 124 GCPPHAES 131 >gi|320106231|ref|YP_004181821.1| NADH-quinone oxidoreductase subunit B [Terriglobus saanensis SP1PR4] gi|319924752|gb|ADV81827.1| NADH-quinone oxidoreductase, B subunit [Terriglobus saanensis SP1PR4] Length = 205 Score = 170 bits (431), Expect = 7e-41, Method: Compositional matrix adjust. Identities = 77/145 (53%), Positives = 110/145 (75%), Gaps = 2/145 (1%) Query: 36 KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSD 94 +G ++ S+D + W R S+ MTFGLACCA+EMM RYD+ RFG R SPRQSD Sbjct: 50 EGIVLASMDAAINWVRKNSVWPMTFGLACCAIEMMSMGGSRYDIARFGAEVFRPSPRQSD 109 Query: 95 VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154 +MI+AG ++ KMA +RR+Y+QMPEP++VISMG+CA GG ++ +Y++++G ++I+PVD+ Sbjct: 110 LMIIAGRVSQKMAPVIRRLYEQMPEPKWVISMGACATSGGVFN-NYALLQGVNQIIPVDL 168 Query: 155 YVPGCPPTAEALIYGILLLQKKIRR 179 YVPGCPP E L+Y I LLQ+KI++ Sbjct: 169 YVPGCPPRPEQLLYAITLLQEKIQQ 193 >gi|282860763|ref|ZP_06269829.1| NADH-quinone oxidoreductase, B subunit [Streptomyces sp. ACTE] gi|282564499|gb|EFB70035.1| NADH-quinone oxidoreductase, B subunit [Streptomyces sp. ACTE] Length = 211 Score = 170 bits (431), Expect = 7e-41, Method: Compositional matrix adjust. Identities = 80/135 (59%), Positives = 103/135 (76%), Gaps = 1/135 (0%) Query: 46 LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA-SPRQSDVMIVAGTLTN 104 ++ W R SL FGLACCA+E + ASM R+D R G P A PRQ+D+M+V+GT+T+ Sbjct: 41 VLNWGRRYSLWVFNFGLACCAIEFIAASMARHDFMRMGVIPFAPGPRQADLMVVSGTVTD 100 Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164 KMA A+RR+Y+QMPEP+YVIS G+C+N GG Y SYSV +G D+I+PVD+YVPGCPP E Sbjct: 101 KMAPAVRRLYEQMPEPKYVISFGACSNCGGPYWDSYSVTKGVDQIIPVDVYVPGCPPRPE 160 Query: 165 ALIYGILLLQKKIRR 179 AL+ GIL LQ+KI R Sbjct: 161 ALLQGILKLQEKIAR 175 >gi|297192751|ref|ZP_06910149.1| NADH dehydrogenase subunit I B [Streptomyces pristinaespiralis ATCC 25486] gi|297151481|gb|EDY64969.2| NADH dehydrogenase subunit I B [Streptomyces pristinaespiralis ATCC 25486] Length = 232 Score = 170 bits (431), Expect = 7e-41, Method: Compositional matrix adjust. Identities = 80/135 (59%), Positives = 103/135 (76%), Gaps = 1/135 (0%) Query: 46 LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS-PRQSDVMIVAGTLTN 104 ++ W R SL FGLACCA+E + ASM R+D R G P A PRQ+D+MIV+GT+T+ Sbjct: 48 ILNWGRRYSLWVFNFGLACCAIEFIAASMARHDFIRLGVIPFAPGPRQADLMIVSGTVTD 107 Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164 KMA A++R+Y+QMPEP+YVIS G+C+N GG Y SYSV +G D+I+PVD+YVPGCPP E Sbjct: 108 KMAPAVKRLYEQMPEPKYVISFGACSNCGGPYWDSYSVTKGVDQIIPVDVYVPGCPPRPE 167 Query: 165 ALIYGILLLQKKIRR 179 AL+ GIL LQ+KI R Sbjct: 168 ALLQGILKLQEKIAR 182 >gi|332885916|gb|EGK06160.1| NADH-quinone oxidoreductase subunit B [Dysgonomonas mossii DSM 22836] Length = 194 Score = 170 bits (431), Expect = 7e-41, Method: Compositional matrix adjust. Identities = 76/141 (53%), Positives = 102/141 (72%), Gaps = 1/141 (0%) Query: 39 LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APRASPRQSDVMI 97 +V +D L+ W R+ S+ + F +CC +E M ++ RYDL RFG R SPRQ+D M+ Sbjct: 37 IVGKLDDLINWGRSNSVWPLAFATSCCGIEFMASAAARYDLARFGMEVTRNSPRQADTMV 96 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGT+ +KMA L+RVYDQM EP+YV++MGSCA GG + SY VV+G D I+PVD+YVP Sbjct: 97 VAGTIVHKMAPLLKRVYDQMAEPKYVVAMGSCAISGGPFVDSYHVVKGIDEIIPVDVYVP 156 Query: 158 GCPPTAEALIYGILLLQKKIR 178 GCPP EAL YG++ LQ+KI+ Sbjct: 157 GCPPRPEALFYGLMQLQRKIK 177 >gi|297159509|gb|ADI09221.1| NADH dehydrogenase subunit B [Streptomyces bingchenggensis BCW-1] Length = 184 Score = 170 bits (431), Expect = 7e-41, Method: Compositional matrix adjust. Identities = 83/144 (57%), Positives = 105/144 (72%), Gaps = 2/144 (1%) Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95 GFL+T+V+Q AR S+ TFGLACCA+EMM RYDL RFG R SPRQ+D+ Sbjct: 10 GFLLTTVEQAAGLARKSSVFPATFGLACCAIEMMTTGAGRYDLARFGMEVFRGSPRQADL 69 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155 MIVAG ++ KMA LR+VYDQMP P++VISMG CA+ GG ++ +Y++V+G D IVPVDIY Sbjct: 70 MIVAGRVSQKMAPVLRQVYDQMPNPKWVISMGVCASSGGMFN-NYAIVQGVDHIVPVDIY 128 Query: 156 VPGCPPTAEALIYGILLLQKKIRR 179 +PGCPP E L+ IL L +KIR Sbjct: 129 LPGCPPRPEMLLDAILKLHQKIRE 152 >gi|254883413|ref|ZP_05256123.1| NADH-quinone oxidoreductase [Bacteroides sp. 4_3_47FAA] gi|254836206|gb|EET16515.1| NADH-quinone oxidoreductase [Bacteroides sp. 4_3_47FAA] Length = 205 Score = 170 bits (431), Expect = 7e-41, Method: Compositional matrix adjust. Identities = 74/141 (52%), Positives = 104/141 (73%), Gaps = 1/141 (0%) Query: 39 LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APRASPRQSDVMI 97 LV +D L+ W R+ SL +TF +CC +E M RYD RFGF RASPRQ+D+++ Sbjct: 44 LVGCLDDLINWGRSNSLWPLTFATSCCGIEFMAVGAARYDFARFGFEVARASPRQADMIM 103 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGT+T+KMA L+R+YDQM +P+YVI++G CA GG + SY V+ G D+I+PVD+Y+P Sbjct: 104 VAGTITHKMAPVLKRLYDQMADPKYVIAVGGCAISGGPFKKSYHVLNGVDKILPVDVYIP 163 Query: 158 GCPPTAEALIYGILLLQKKIR 178 GCPP EAL+YG++ LQ+K++ Sbjct: 164 GCPPRPEALLYGMIQLQRKVK 184 >gi|212693812|ref|ZP_03301940.1| hypothetical protein BACDOR_03333 [Bacteroides dorei DSM 17855] gi|237709340|ref|ZP_04539821.1| trifunctional NADH dehydrogenase I subunit B/C/D [Bacteroides sp. 9_1_42FAA] gi|237724574|ref|ZP_04555055.1| trifunctional NADH dehydrogenase I subunit B/C/D [Bacteroides sp. D4] gi|265755015|ref|ZP_06089929.1| NADH-quinone oxidoreductase [Bacteroides sp. 3_1_33FAA] gi|212663701|gb|EEB24275.1| hypothetical protein BACDOR_03333 [Bacteroides dorei DSM 17855] gi|229437133|gb|EEO47210.1| trifunctional NADH dehydrogenase I subunit B/C/D [Bacteroides dorei 5_1_36/D4] gi|229456725|gb|EEO62446.1| trifunctional NADH dehydrogenase I subunit B/C/D [Bacteroides sp. 9_1_42FAA] gi|263234626|gb|EEZ20205.1| NADH-quinone oxidoreductase [Bacteroides sp. 3_1_33FAA] Length = 198 Score = 170 bits (431), Expect = 7e-41, Method: Compositional matrix adjust. Identities = 74/141 (52%), Positives = 104/141 (73%), Gaps = 1/141 (0%) Query: 39 LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APRASPRQSDVMI 97 LV +D L+ W R+ SL +TF +CC +E M RYD RFGF RASPRQ+D+++ Sbjct: 37 LVGCLDDLINWGRSNSLWPLTFATSCCGIEFMAVGAARYDFARFGFEVARASPRQADMIM 96 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGT+T+KMA L+R+YDQM +P+YVI++G CA GG + SY V+ G D+I+PVD+Y+P Sbjct: 97 VAGTITHKMAPVLKRLYDQMADPKYVIAVGGCAISGGPFKKSYHVLNGVDKILPVDVYIP 156 Query: 158 GCPPTAEALIYGILLLQKKIR 178 GCPP EAL+YG++ LQ+K++ Sbjct: 157 GCPPRPEALLYGMIQLQRKVK 177 >gi|154508638|ref|ZP_02044280.1| hypothetical protein ACTODO_01139 [Actinomyces odontolyticus ATCC 17982] gi|293191717|ref|ZP_06609274.1| NADH dehydrogenase I subunit B [Actinomyces odontolyticus F0309] gi|153798272|gb|EDN80692.1| hypothetical protein ACTODO_01139 [Actinomyces odontolyticus ATCC 17982] gi|292820489|gb|EFF79471.1| NADH dehydrogenase I subunit B [Actinomyces odontolyticus F0309] Length = 184 Score = 170 bits (431), Expect = 7e-41, Method: Compositional matrix adjust. Identities = 79/142 (55%), Positives = 112/142 (78%), Gaps = 2/142 (1%) Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95 G +TSV++++ AR S +T GLACCA+EMM A PR+D+ RFG RASPR +D+ Sbjct: 10 GIALTSVEKVLGLARKYSQWPVTMGLACCAIEMMAAGTPRFDMARFGLEVFRASPRHADM 69 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155 MIV+G +++KMA +RRVYD MPEP++VISMG+CA+ GG ++ +Y+VV+GCD IVPVD+Y Sbjct: 70 MIVSGRVSHKMAPIIRRVYDSMPEPKWVISMGACASSGGVFN-NYAVVQGCDHIVPVDVY 128 Query: 156 VPGCPPTAEALIYGILLLQKKI 177 +PGCPP EALI+ +L+L+++I Sbjct: 129 LPGCPPRPEALIHAVLVLREQI 150 >gi|294674399|ref|YP_003575015.1| proton-translocating NADH-quinone oxidoreductase subunit B [Prevotella ruminicola 23] gi|294473976|gb|ADE83365.1| putative proton-translocating NADH-quinone oxidoreductase, B subunit [Prevotella ruminicola 23] Length = 263 Score = 170 bits (431), Expect = 7e-41, Method: Compositional matrix adjust. Identities = 76/159 (47%), Positives = 110/159 (69%), Gaps = 3/159 (1%) Query: 23 DADFSRISSEITHKGFLVT--SVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLE 80 + +I E+ G V S+DQL+ W R+ SL +TF +CC +E M RYD Sbjct: 19 NESLEKIIDELHEGGVNVVTGSLDQLINWGRSNSLWSLTFATSCCGIEFMACGCSRYDFA 78 Query: 81 RFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS 139 RFGF R SPRQ+D+++ AGT+T+KMA AL+R+YDQM EP+YV+++G CA GG + S Sbjct: 79 RFGFEVTRNSPRQADLIMCAGTITHKMAPALKRLYDQMAEPKYVVAVGGCAISGGPFKSS 138 Query: 140 YSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 Y VV+G + IVPVD+++PGCPP EA++YG++ LQ+K++ Sbjct: 139 YHVVKGIEEIVPVDVFIPGCPPRPEAIMYGMMQLQRKVK 177 >gi|239980151|ref|ZP_04702675.1| NADH dehydrogenase subunit B [Streptomyces albus J1074] gi|291452006|ref|ZP_06591396.1| NuoB [Streptomyces albus J1074] gi|291354955|gb|EFE81857.1| NuoB [Streptomyces albus J1074] Length = 184 Score = 170 bits (431), Expect = 7e-41, Method: Compositional matrix adjust. Identities = 81/149 (54%), Positives = 106/149 (71%), Gaps = 2/149 (1%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RAS 89 E GFL+T+V+Q W R S+ TFGLACCA+EMM RYDL RFG R S Sbjct: 4 EEKLPSGFLLTTVEQAAGWVRKSSMFPATFGLACCAIEMMTTGAGRYDLARFGMEVFRGS 63 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQ+D+MIVAG ++ KMA LR+VYDQMP P++VISMG CA+ GG ++ +Y++V+G D I Sbjct: 64 PRQADLMIVAGRVSQKMAPVLRQVYDQMPNPKWVISMGVCASSGGMFN-NYAIVQGVDHI 122 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIR 178 VPVDIY+PGCPP E L+ I+ L +K++ Sbjct: 123 VPVDIYLPGCPPRPEMLVDAIVKLHQKVQ 151 >gi|82658723|gb|ABB88530.1| menaquinone oxidoreductase [Streptomyces sp. Eco86] Length = 184 Score = 170 bits (431), Expect = 7e-41, Method: Compositional matrix adjust. Identities = 82/149 (55%), Positives = 106/149 (71%), Gaps = 2/149 (1%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RAS 89 E GFL+++V+Q W R S+ TFGLACCA E+M A RYDL RFG R S Sbjct: 4 EESLPSGFLLSTVEQAAGWVRKASVFPATFGLACCAFELMAAGAGRYDLARFGMEVFRGS 63 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQ+D+MIVAG ++ KMA LR++YDQMP P++VISMG CA+ GG ++ +Y++V+G D I Sbjct: 64 PRQADLMIVAGRVSQKMAPVLRQIYDQMPNPKWVISMGVCASSGGMFN-NYAIVQGVDHI 122 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIR 178 VPVDIY+PGCPP E L+ IL L +KIR Sbjct: 123 VPVDIYLPGCPPRPEMLMDAILKLHEKIR 151 >gi|307328622|ref|ZP_07607795.1| NADH-quinone oxidoreductase, B subunit [Streptomyces violaceusniger Tu 4113] gi|306885734|gb|EFN16747.1| NADH-quinone oxidoreductase, B subunit [Streptomyces violaceusniger Tu 4113] Length = 184 Score = 170 bits (431), Expect = 7e-41, Method: Compositional matrix adjust. Identities = 84/150 (56%), Positives = 106/150 (70%), Gaps = 2/150 (1%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RAS 89 E GFL+T+V+Q AR S+ TFGLACCA+EMM RYDL RFG R S Sbjct: 4 EEKLPSGFLLTTVEQAAGLARKSSVFPATFGLACCAIEMMTTGAGRYDLARFGMEVFRGS 63 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQ+D+MIVAG ++ KMA LR+VYDQMP P++VISMG CA+ GG ++ +Y++V+G D I Sbjct: 64 PRQADLMIVAGRVSQKMAPVLRQVYDQMPNPKWVISMGVCASSGGMFN-NYAIVQGVDHI 122 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRR 179 VPVDIY+PGCPP E L+ IL L +KIR Sbjct: 123 VPVDIYLPGCPPRPEMLLDSILKLHQKIRE 152 >gi|253570156|ref|ZP_04847565.1| NADH-quinone oxidoreductase [Bacteroides sp. 1_1_6] gi|251840537|gb|EES68619.1| NADH-quinone oxidoreductase [Bacteroides sp. 1_1_6] Length = 197 Score = 170 bits (431), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 77/162 (47%), Positives = 111/162 (68%), Gaps = 6/162 (3%) Query: 18 SLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRY 77 SLEK+ + + + + + +D LV W R+ SL +TF +CC +E M RY Sbjct: 22 SLEKLVKELNAGGANV-----FLGVLDDLVNWGRSNSLWPLTFATSCCGIEFMALGAARY 76 Query: 78 DLERFGF-APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY 136 D+ RFGF RASPRQ+D+++V GT+TNKMA L+R+YDQMP+P+YV+++G CA GG + Sbjct: 77 DMARFGFEVARASPRQADMIMVCGTITNKMAPVLKRLYDQMPDPKYVVAVGGCAVSGGPF 136 Query: 137 HYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 SY VV G D+I+PVD+Y+PGCPP EA YG++ LQ+K++ Sbjct: 137 KKSYHVVNGVDKILPVDVYIPGCPPRPEAFYYGMMQLQRKVK 178 >gi|302864902|ref|YP_003833539.1| NADH-quinone oxidoreductase subunit B [Micromonospora aurantiaca ATCC 27029] gi|315501187|ref|YP_004080074.1| NADH-quinone oxidoreductase, b subunit [Micromonospora sp. L5] gi|302567761|gb|ADL43963.1| NADH-quinone oxidoreductase, B subunit [Micromonospora aurantiaca ATCC 27029] gi|315407806|gb|ADU05923.1| NADH-quinone oxidoreductase, B subunit [Micromonospora sp. L5] Length = 226 Score = 170 bits (431), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 81/142 (57%), Positives = 108/142 (76%), Gaps = 2/142 (1%) Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95 G L+TSV++LV W R S+ TFGLACCA+EMM A P YD+ R+G RASPRQ+D+ Sbjct: 10 GVLLTSVEKLVNWTRKTSVWGATFGLACCAIEMMAAGGPHYDMGRWGMEVFRASPRQADL 69 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155 MIVAG ++ KMA LR++YDQM EPR+VISMG CA+ GG ++ +Y++V+G D +VPVD+Y Sbjct: 70 MIVAGRVSQKMAPVLRQIYDQMAEPRWVISMGVCASSGGMFN-NYAIVQGVDHVVPVDMY 128 Query: 156 VPGCPPTAEALIYGILLLQKKI 177 +PGCPP E LI +L L++KI Sbjct: 129 LPGCPPRPEMLIDAVLKLREKI 150 >gi|302536203|ref|ZP_07288545.1| NADH dehydrogenase subunit NuoB2 [Streptomyces sp. C] gi|302445098|gb|EFL16914.1| NADH dehydrogenase subunit NuoB2 [Streptomyces sp. C] Length = 203 Score = 170 bits (431), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 80/135 (59%), Positives = 103/135 (76%), Gaps = 1/135 (0%) Query: 46 LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS-PRQSDVMIVAGTLTN 104 ++ W R SL FGLACCA+E + ASM R+D R G P A PRQ+D+MIV+GT+T+ Sbjct: 38 VLNWGRRYSLWVFNFGLACCAIEFIAASMARHDFIRLGVIPFAPGPRQADLMIVSGTVTD 97 Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164 KMA A++R+Y+QMPEP+YVIS G+C+N GG Y SYSV +G D+I+PVD+YVPGCPP E Sbjct: 98 KMAPAVKRLYEQMPEPKYVISFGACSNCGGPYWDSYSVTKGVDQIIPVDVYVPGCPPRPE 157 Query: 165 ALIYGILLLQKKIRR 179 AL+ GIL LQ+KI R Sbjct: 158 ALLQGILKLQEKIAR 172 >gi|291303411|ref|YP_003514689.1| NADH-quinone oxidoreductase subunit B [Stackebrandtia nassauensis DSM 44728] gi|290572631|gb|ADD45596.1| NADH-quinone oxidoreductase, B subunit [Stackebrandtia nassauensis DSM 44728] Length = 188 Score = 170 bits (431), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 78/142 (54%), Positives = 106/142 (74%), Gaps = 1/142 (0%) Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA-SPRQSDV 95 G L + ++ W R SL FGLACCA+E + +SM R+D R G P A PRQ+D+ Sbjct: 15 GVLGEPIRFVLNWGRRYSLWVFNFGLACCAIEFIASSMGRHDFMRLGVIPFAHGPRQADL 74 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155 M+V+GT+T+KMA A++R+YDQMPEP+YVIS G+C+N GG Y SYSV +G D+++PVD+Y Sbjct: 75 MVVSGTVTDKMAPAIKRLYDQMPEPKYVISFGACSNSGGPYWDSYSVTKGVDQLIPVDVY 134 Query: 156 VPGCPPTAEALIYGILLLQKKI 177 VPGCPP EAL++GI+ LQ+KI Sbjct: 135 VPGCPPRPEALLHGIMRLQEKI 156 >gi|239943477|ref|ZP_04695414.1| NADH dehydrogenase subunit B [Streptomyces roseosporus NRRL 15998] gi|239989931|ref|ZP_04710595.1| NADH dehydrogenase subunit B [Streptomyces roseosporus NRRL 11379] gi|291446948|ref|ZP_06586338.1| NADH dehydrogenase subunit B [Streptomyces roseosporus NRRL 15998] gi|291349895|gb|EFE76799.1| NADH dehydrogenase subunit B [Streptomyces roseosporus NRRL 15998] Length = 184 Score = 170 bits (431), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 82/149 (55%), Positives = 106/149 (71%), Gaps = 2/149 (1%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RAS 89 E GF++T+V+Q W R S+ TFGLACCA+EMM RYDL RFG R S Sbjct: 4 EEKLPSGFVLTTVEQAAGWVRKASVFPATFGLACCAIEMMTTGAGRYDLARFGMEVFRGS 63 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQ+D+MIVAG ++ KMA LR+VYDQMP P++VISMG CA+ GG ++ +Y++V+G D I Sbjct: 64 PRQADLMIVAGRVSQKMAPVLRQVYDQMPNPKWVISMGVCASSGGMFN-NYAIVQGVDHI 122 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIR 178 VPVDIY+PGCPP E L+ IL L +KI+ Sbjct: 123 VPVDIYLPGCPPRPEMLLDAILKLHQKIQ 151 >gi|225872572|ref|YP_002754027.1| NADH dehydrogenase I, B subunit [Acidobacterium capsulatum ATCC 51196] gi|225792841|gb|ACO32931.1| NADH dehydrogenase I, B subunit [Acidobacterium capsulatum ATCC 51196] Length = 186 Score = 170 bits (430), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 75/144 (52%), Positives = 108/144 (75%), Gaps = 2/144 (1%) Query: 36 KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSD 94 +G +T++D + W R S+ MTFGLACCA+EMM R+D+ RFG R SPRQ+D Sbjct: 31 EGVFLTTLDSAINWVRKSSIWPMTFGLACCAIEMMSMGASRFDVARFGAEVFRPSPRQAD 90 Query: 95 VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154 +M++AG ++ KMA +RR+YDQMPEP++VISMG+CA GG ++ +Y++++G ++++PVDI Sbjct: 91 LMVIAGRVSQKMAPVIRRLYDQMPEPKWVISMGACATSGGVFN-NYALLQGVNQVIPVDI 149 Query: 155 YVPGCPPTAEALIYGILLLQKKIR 178 YVPGCPP E LIY LLQ+KI+ Sbjct: 150 YVPGCPPRPEQLIYAFTLLQEKIQ 173 >gi|224026051|ref|ZP_03644417.1| hypothetical protein BACCOPRO_02804 [Bacteroides coprophilus DSM 18228] gi|224019287|gb|EEF77285.1| hypothetical protein BACCOPRO_02804 [Bacteroides coprophilus DSM 18228] Length = 200 Score = 170 bits (430), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 74/143 (51%), Positives = 104/143 (72%), Gaps = 1/143 (0%) Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APRASPRQSDV 95 G ++ ++D+L+ W R+ SL +TFG +CCA+E M RYD+ RFGF R SPRQ+D+ Sbjct: 35 GIIIGTIDELIEWGRSNSLWSLTFGTSCCAIEFMALGAARYDMARFGFEVTRNSPRQADM 94 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155 ++V GT+T KMA L+R+YDQM EP+YVI++G C GG + SY VV G D+I+PVD+Y Sbjct: 95 IMVLGTITYKMAPVLKRLYDQMAEPKYVIAVGGCTISGGPFIKSYHVVNGIDKIIPVDVY 154 Query: 156 VPGCPPTAEALIYGILLLQKKIR 178 +PGCPP EA YG++ LQ+KI+ Sbjct: 155 IPGCPPRPEAFYYGMMQLQRKIK 177 >gi|299137549|ref|ZP_07030730.1| NADH-quinone oxidoreductase, B subunit [Acidobacterium sp. MP5ACTX8] gi|298600190|gb|EFI56347.1| NADH-quinone oxidoreductase, B subunit [Acidobacterium sp. MP5ACTX8] Length = 205 Score = 170 bits (430), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 77/148 (52%), Positives = 110/148 (74%), Gaps = 2/148 (1%) Query: 32 EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASP 90 E +G ++ S+D + W R S+ MTFGLACCA+EMM RYD+ RFG R SP Sbjct: 46 EEQPEGVVLASLDAAINWVRKNSVWPMTFGLACCAIEMMSMGGSRYDIARFGAEVFRPSP 105 Query: 91 RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150 RQSD+MI+AG ++ KMA +RR+Y+QMPEP++VISMG+CA GG ++ +Y++++G ++++ Sbjct: 106 RQSDLMIIAGRVSQKMAPVIRRLYEQMPEPKWVISMGACATSGGVFN-NYALLQGVNQVI 164 Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIR 178 PVD+YVPGCPP E L+Y I LLQ+KI+ Sbjct: 165 PVDVYVPGCPPRPEQLLYAITLLQEKIQ 192 >gi|182436717|ref|YP_001824436.1| putative NADH dehydrogenase chain B [Streptomyces griseus subsp. griseus NBRC 13350] gi|238065043|sp|B1W4V9|NUOB2_STRGG RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName: Full=NADH dehydrogenase I subunit B 2; AltName: Full=NDH-1 subunit B 2 gi|178465233|dbj|BAG19753.1| putative NADH dehydrogenase chain B [Streptomyces griseus subsp. griseus NBRC 13350] Length = 235 Score = 170 bits (430), Expect = 9e-41, Method: Compositional matrix adjust. Identities = 80/135 (59%), Positives = 103/135 (76%), Gaps = 1/135 (0%) Query: 46 LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS-PRQSDVMIVAGTLTN 104 ++ W R SL FGLACCA+E + ASM R+D R G P A PRQ+D+MIV+GT+T+ Sbjct: 45 VLNWGRRYSLWVFNFGLACCAIEFIAASMARHDFIRLGVIPFAPGPRQADLMIVSGTVTD 104 Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164 KMA A++R+Y+QMPEP+YVIS G+C+N GG Y SYSV +G D+I+PVD+YVPGCPP E Sbjct: 105 KMAPAVKRLYEQMPEPKYVISFGACSNCGGPYWDSYSVTKGVDQIIPVDVYVPGCPPRPE 164 Query: 165 ALIYGILLLQKKIRR 179 AL+ GIL LQ+KI R Sbjct: 165 ALLQGILKLQEKIAR 179 >gi|150004312|ref|YP_001299056.1| NADH dehydrogenase subunit B [Bacteroides vulgatus ATCC 8482] gi|294776877|ref|ZP_06742340.1| NADH-quinone oxidoreductase, B subunit [Bacteroides vulgatus PC510] gi|319644247|ref|ZP_07998760.1| NADH dehydrogenase subunit I B [Bacteroides sp. 3_1_40A] gi|238065064|sp|A6L170|NUOB_BACV8 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|149932736|gb|ABR39434.1| NADH dehydrogenase I chain B [Bacteroides vulgatus ATCC 8482] gi|294449353|gb|EFG17890.1| NADH-quinone oxidoreductase, B subunit [Bacteroides vulgatus PC510] gi|317384238|gb|EFV65210.1| NADH dehydrogenase subunit I B [Bacteroides sp. 3_1_40A] Length = 198 Score = 170 bits (430), Expect = 9e-41, Method: Compositional matrix adjust. Identities = 74/141 (52%), Positives = 104/141 (73%), Gaps = 1/141 (0%) Query: 39 LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APRASPRQSDVMI 97 LV +D L+ W R+ SL +TF +CC +E M RYD RFGF RASPRQ+D+++ Sbjct: 37 LVGCLDDLINWGRSNSLWPLTFATSCCGIEFMAVGAARYDFARFGFEVARASPRQADMIM 96 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGT+T+KMA L+R+YDQM +P+YVI++G CA GG + SY V+ G D+I+PVD+Y+P Sbjct: 97 VAGTITHKMAPVLKRLYDQMADPKYVIAVGGCAISGGPFKKSYHVLNGVDKILPVDVYIP 156 Query: 158 GCPPTAEALIYGILLLQKKIR 178 GCPP EAL+YG++ LQ+K++ Sbjct: 157 GCPPRPEALLYGMIQLQRKVK 177 >gi|332826700|gb|EGJ99522.1| NADH-quinone oxidoreductase subunit B [Dysgonomonas gadei ATCC BAA-286] Length = 197 Score = 170 bits (430), Expect = 9e-41, Method: Compositional matrix adjust. Identities = 78/151 (51%), Positives = 105/151 (69%), Gaps = 3/151 (1%) Query: 31 SEITHKGF--LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APR 87 E+ G +V +D L+ W R+ S+ + F +CC +E M ++ RYDL RFG R Sbjct: 34 KELNENGVPVVVGKLDDLINWGRSNSVWPLAFATSCCGIEFMASAAARYDLARFGMEVTR 93 Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCD 147 SPRQ+D M+VAGT+ +KMA L+RVYDQM EP+YV++MGSCA GG + SY VV+G D Sbjct: 94 NSPRQADTMVVAGTIVHKMAPLLKRVYDQMAEPKYVVAMGSCAISGGPFVDSYHVVKGID 153 Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 I+PVD+YVPGCPP EAL YG++ LQ+KI+ Sbjct: 154 EIMPVDVYVPGCPPRPEALFYGLMQLQRKIK 184 >gi|182436776|ref|YP_001824495.1| NADH dehydrogenase subunit B [Streptomyces griseus subsp. griseus NBRC 13350] gi|326777371|ref|ZP_08236636.1| NAD(P)H-quinone oxidoreductase subunit K [Streptomyces cf. griseus XylebKG-1] gi|238065022|sp|B1W518|NUOB1_STRGG RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName: Full=NADH dehydrogenase I subunit B 1; AltName: Full=NDH-1 subunit B 1 gi|178465292|dbj|BAG19812.1| putative NADH dehydrogenase chain B [Streptomyces griseus subsp. griseus NBRC 13350] gi|326657704|gb|EGE42550.1| NAD(P)H-quinone oxidoreductase subunit K [Streptomyces cf. griseus XylebKG-1] Length = 184 Score = 170 bits (430), Expect = 9e-41, Method: Compositional matrix adjust. Identities = 82/149 (55%), Positives = 106/149 (71%), Gaps = 2/149 (1%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RAS 89 E GF++T+V+Q W R S+ TFGLACCA+EMM RYDL RFG R S Sbjct: 4 EEKLPSGFVLTTVEQAAGWVRKSSVFPATFGLACCAIEMMTTGAGRYDLARFGMEVFRGS 63 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQ+D+MIVAG ++ KMA LR+VYDQMP P++VISMG CA+ GG ++ +Y++V+G D I Sbjct: 64 PRQADLMIVAGRVSQKMAPVLRQVYDQMPNPKWVISMGVCASSGGMFN-NYAIVQGVDHI 122 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIR 178 VPVDIY+PGCPP E L+ IL L +KI+ Sbjct: 123 VPVDIYLPGCPPRPEMLLDAILKLHQKIQ 151 >gi|159039974|ref|YP_001539227.1| NADH-quinone oxidoreductase, B subunit [Salinispora arenicola CNS-205] gi|238065040|sp|A8M621|NUOB2_SALAI RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName: Full=NADH dehydrogenase I subunit B 2; AltName: Full=NDH-1 subunit B 2 gi|157918809|gb|ABW00237.1| NADH-quinone oxidoreductase, B subunit [Salinispora arenicola CNS-205] Length = 226 Score = 170 bits (430), Expect = 9e-41, Method: Compositional matrix adjust. Identities = 80/142 (56%), Positives = 109/142 (76%), Gaps = 2/142 (1%) Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95 G L+TSV++LV W+R S+ TFGLACCA+EMM A P YD+ R+G RASPRQ+D+ Sbjct: 10 GVLLTSVEKLVNWSRKSSVWGATFGLACCAIEMMAAGGPHYDMGRWGMEVFRASPRQADL 69 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155 MIVAG ++ KMA LR++YDQM EPR+V+SMG CA+ GG ++ +Y++V+G D +VPVD+Y Sbjct: 70 MIVAGRVSQKMAPVLRQIYDQMAEPRWVLSMGVCASSGGMFN-NYAIVQGVDHVVPVDMY 128 Query: 156 VPGCPPTAEALIYGILLLQKKI 177 +PGCPP E LI +L L++KI Sbjct: 129 LPGCPPRPEMLIDAVLKLREKI 150 >gi|328884356|emb|CCA57595.1| NADH-ubiquinone oxidoreductase chain B [Streptomyces venezuelae ATCC 10712] Length = 193 Score = 170 bits (430), Expect = 9e-41, Method: Compositional matrix adjust. Identities = 80/135 (59%), Positives = 103/135 (76%), Gaps = 1/135 (0%) Query: 46 LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA-SPRQSDVMIVAGTLTN 104 ++ W R SL FGLACCA+E + ASM R+D R G P A PRQ+D+MIV+GT+T+ Sbjct: 29 VLNWGRRYSLWVFNFGLACCAIEFIAASMARHDFIRLGVIPFAPGPRQADLMIVSGTVTD 88 Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164 KMA A++R+Y+QMPEP+YVIS G+C+N GG Y SYSV +G D+I+PVD+YVPGCPP E Sbjct: 89 KMAPAVKRLYEQMPEPKYVISFGACSNCGGPYWDSYSVTKGVDQIIPVDVYVPGCPPRPE 148 Query: 165 ALIYGILLLQKKIRR 179 AL+ GIL LQ+KI R Sbjct: 149 ALLQGILKLQEKIAR 163 >gi|297201676|ref|ZP_06919073.1| NADH dehydrogenase subunit NuoB2 [Streptomyces sviceus ATCC 29083] gi|297147941|gb|EDY54985.2| NADH dehydrogenase subunit NuoB2 [Streptomyces sviceus ATCC 29083] Length = 234 Score = 170 bits (430), Expect = 9e-41, Method: Compositional matrix adjust. Identities = 79/135 (58%), Positives = 103/135 (76%), Gaps = 1/135 (0%) Query: 46 LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA-SPRQSDVMIVAGTLTN 104 ++ W R SL FGLACCA+E + ASM R+D R G P A PRQ+D+M+V+GT+T+ Sbjct: 45 ILNWGRRYSLWVFNFGLACCAIEFIAASMARHDFIRLGVIPFAPGPRQADLMVVSGTVTD 104 Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164 KMA A++R+Y+QMPEP+YVIS G+C+N GG Y SYSV +G D+I+PVD+YVPGCPP E Sbjct: 105 KMAPAVKRLYEQMPEPKYVISFGACSNCGGPYWDSYSVTKGVDQIIPVDVYVPGCPPRPE 164 Query: 165 ALIYGILLLQKKIRR 179 AL+ GIL LQ+KI R Sbjct: 165 ALLQGILKLQEKIAR 179 >gi|193215671|ref|YP_001996870.1| NADH-quinone oxidoreductase subunit B [Chloroherpeton thalassium ATCC 35110] gi|238065009|sp|B3QUS2|NUOB1_CHLT3 RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName: Full=NADH dehydrogenase I subunit B 1; AltName: Full=NDH-1 subunit B 1 gi|193089148|gb|ACF14423.1| NADH-quinone oxidoreductase, B subunit [Chloroherpeton thalassium ATCC 35110] Length = 186 Score = 170 bits (430), Expect = 9e-41, Method: Compositional matrix adjust. Identities = 75/144 (52%), Positives = 110/144 (76%), Gaps = 2/144 (1%) Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95 GFL T++D + W R S+ M GL+CCA+EMM + PRYD+ RFG R SPRQSD+ Sbjct: 10 GFLTTTLDAITNWGRANSIWPMPMGLSCCAIEMMAMAGPRYDIARFGAEVFRFSPRQSDL 69 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155 MIVAGT+T KMA+ +++++DQMPEP++ I+MG+C++ GG + SY VV+G D+ +PVD+Y Sbjct: 70 MIVAGTVTYKMATVVKKIWDQMPEPKWCIAMGACSSSGGMFR-SYPVVQGIDQFLPVDVY 128 Query: 156 VPGCPPTAEALIYGILLLQKKIRR 179 VPGCPP +A+I+ ++ +Q+KI+R Sbjct: 129 VPGCPPRPDAVIHAVMEIQEKIKR 152 >gi|271962234|ref|YP_003336430.1| NADH dehydrogenase (quinone) [Streptosporangium roseum DSM 43021] gi|270505409|gb|ACZ83687.1| NADH dehydrogenase (quinone) [Streptosporangium roseum DSM 43021] Length = 173 Score = 170 bits (430), Expect = 9e-41, Method: Compositional matrix adjust. Identities = 77/133 (57%), Positives = 104/133 (78%), Gaps = 1/133 (0%) Query: 46 LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS-PRQSDVMIVAGTLTN 104 ++ W R SL FGLACCA+E + +M R+D RFG P A+ PRQ+D+MIV+GT+T+ Sbjct: 23 ILNWGRRYSLWAFNFGLACCAIEFIATTMSRHDFIRFGVIPFANGPRQADLMIVSGTVTD 82 Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164 KMA A++R+Y+QMPEP+YVIS G+C+N GG Y SY V +G D+I+PVD+YVPGCPP E Sbjct: 83 KMAPAVKRLYEQMPEPKYVISFGACSNSGGPYWDSYCVTKGVDQIIPVDVYVPGCPPRPE 142 Query: 165 ALIYGILLLQKKI 177 AL++GI+LLQ+KI Sbjct: 143 ALLHGIMLLQEKI 155 >gi|254382442|ref|ZP_04997801.1| NuoB [Streptomyces sp. Mg1] gi|194341346|gb|EDX22312.1| NuoB [Streptomyces sp. Mg1] Length = 184 Score = 170 bits (430), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 83/149 (55%), Positives = 105/149 (70%), Gaps = 2/149 (1%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RAS 89 E GFL+T+V+Q W R S+ TFGLACCA+EMM RYDL RFG R S Sbjct: 4 EEKLPSGFLLTTVEQAAGWVRKSSVFPATFGLACCAIEMMTTGAGRYDLARFGMEVFRGS 63 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQ+D+MIVAG ++ KMA LR+VYDQMP P++VISMG CA+ GG ++ +Y++V+G D I Sbjct: 64 PRQADLMIVAGRVSQKMAPVLRQVYDQMPAPKWVISMGVCASSGGMFN-NYAIVQGVDHI 122 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIR 178 VPVDIY+PGCPP E L+ IL L KI+ Sbjct: 123 VPVDIYLPGCPPRPEMLMDAILKLHHKIQ 151 >gi|158317835|ref|YP_001510343.1| NADH dehydrogenase subunit B [Frankia sp. EAN1pec] gi|238065147|sp|A8LCA0|NUOB_FRASN RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|158113240|gb|ABW15437.1| NADH-quinone oxidoreductase, B subunit [Frankia sp. EAN1pec] Length = 264 Score = 170 bits (430), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 80/142 (56%), Positives = 107/142 (75%), Gaps = 2/142 (1%) Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95 G L+T+V++L W+R SL TFGLACCA+EMM RYDL RFG RASPRQ+D+ Sbjct: 10 GVLLTTVEKLANWSRRSSLWPATFGLACCAIEMMSTGAGRYDLSRFGMEVFRASPRQADL 69 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155 MIVAG ++ KMA LR++YDQMPEP++V+SMG CA+ GG ++ +Y++V+G D IVPVD+Y Sbjct: 70 MIVAGRVSQKMAPVLRQIYDQMPEPKWVLSMGVCASSGGMFN-NYAIVQGVDHIVPVDMY 128 Query: 156 VPGCPPTAEALIYGILLLQKKI 177 +PGCPP E L+ I+ L +KI Sbjct: 129 LPGCPPRPEMLMDAIVKLHEKI 150 >gi|294814429|ref|ZP_06773072.1| NADH dehydrogenase I chain B [Streptomyces clavuligerus ATCC 27064] gi|326442819|ref|ZP_08217553.1| putative NADH dehydrogenase chain B [Streptomyces clavuligerus ATCC 27064] gi|294327028|gb|EFG08671.1| NADH dehydrogenase I chain B [Streptomyces clavuligerus ATCC 27064] Length = 239 Score = 170 bits (430), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 80/135 (59%), Positives = 103/135 (76%), Gaps = 1/135 (0%) Query: 46 LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA-SPRQSDVMIVAGTLTN 104 ++ W R SL FGLACCA+E + ASM R+D R G P A PRQ+D+MIV+GT+T+ Sbjct: 56 VLNWGRRYSLWVFNFGLACCAIEFIAASMARHDFIRLGVIPFAPGPRQADLMIVSGTVTD 115 Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164 KMA A++R+Y+QMPEP+YVIS G+C+N GG Y SYSV +G D+I+PVD+YVPGCPP E Sbjct: 116 KMAPAVKRLYEQMPEPKYVISFGACSNCGGPYWDSYSVTKGVDQIIPVDVYVPGCPPRPE 175 Query: 165 ALIYGILLLQKKIRR 179 AL+ GIL LQ+KI R Sbjct: 176 ALLQGILKLQEKIAR 190 >gi|239943528|ref|ZP_04695465.1| putative NADH dehydrogenase chain B [Streptomyces roseosporus NRRL 15998] gi|239989982|ref|ZP_04710646.1| putative NADH dehydrogenase chain B [Streptomyces roseosporus NRRL 11379] Length = 226 Score = 170 bits (430), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 80/135 (59%), Positives = 103/135 (76%), Gaps = 1/135 (0%) Query: 46 LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS-PRQSDVMIVAGTLTN 104 ++ W R SL FGLACCA+E + ASM R+D R G P A PRQ+D+MIV+GT+T+ Sbjct: 47 VLNWGRRYSLWVFNFGLACCAIEFIAASMARHDFIRLGVIPFAPGPRQADLMIVSGTVTD 106 Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164 KMA A++R+Y+QMPEP+YVIS G+C+N GG Y SYSV +G D+I+PVD+YVPGCPP E Sbjct: 107 KMAPAVKRLYEQMPEPKYVISFGACSNCGGPYWDSYSVTKGVDQIIPVDVYVPGCPPRPE 166 Query: 165 ALIYGILLLQKKIRR 179 AL+ GIL LQ+KI R Sbjct: 167 ALLQGILKLQEKIAR 181 >gi|254391175|ref|ZP_05006382.1| NADH dehydrogenase I chain B [Streptomyces clavuligerus ATCC 27064] gi|197704869|gb|EDY50681.1| NADH dehydrogenase I chain B [Streptomyces clavuligerus ATCC 27064] Length = 237 Score = 170 bits (430), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 80/135 (59%), Positives = 103/135 (76%), Gaps = 1/135 (0%) Query: 46 LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA-SPRQSDVMIVAGTLTN 104 ++ W R SL FGLACCA+E + ASM R+D R G P A PRQ+D+MIV+GT+T+ Sbjct: 54 VLNWGRRYSLWVFNFGLACCAIEFIAASMARHDFIRLGVIPFAPGPRQADLMIVSGTVTD 113 Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164 KMA A++R+Y+QMPEP+YVIS G+C+N GG Y SYSV +G D+I+PVD+YVPGCPP E Sbjct: 114 KMAPAVKRLYEQMPEPKYVISFGACSNCGGPYWDSYSVTKGVDQIIPVDVYVPGCPPRPE 173 Query: 165 ALIYGILLLQKKIRR 179 AL+ GIL LQ+KI R Sbjct: 174 ALLQGILKLQEKIAR 188 >gi|260885204|ref|ZP_05734514.2| NADH dehydrogenase I subunit B [Prevotella tannerae ATCC 51259] gi|260853160|gb|EEX73029.1| NADH dehydrogenase I subunit B [Prevotella tannerae ATCC 51259] Length = 214 Score = 169 bits (429), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 74/161 (45%), Positives = 111/161 (68%), Gaps = 3/161 (1%) Query: 21 KVDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78 K + + ++ +E+ G +V +D L+ W R+ SL +TF +CC +E M RYD Sbjct: 19 KDNETYEKLVAELNANGANVIVKPLDDLINWGRSNSLWPLTFATSCCGIEFMAVCAARYD 78 Query: 79 LERFGF-APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137 + RFGF R SPRQ+DV++V+GT+TNKMA L+R+YDQM +P+YV+++G CA GG + Sbjct: 79 IARFGFEVTRNSPRQADVILVSGTITNKMAPVLKRLYDQMADPKYVVAIGGCATTGGPFV 138 Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 SY VV+G D I+PV++YVPGCPP EA +YG++ LQ+ ++ Sbjct: 139 KSYHVVKGVDEIIPVNVYVPGCPPRPEAFLYGMMQLQRIVK 179 >gi|322417697|ref|YP_004196920.1| NADH dehydrogenase I subunit D [Geobacter sp. M18] gi|320124084|gb|ADW11644.1| NADH dehydrogenase I, D subunit [Geobacter sp. M18] Length = 794 Score = 169 bits (429), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 81/153 (52%), Positives = 110/153 (71%), Gaps = 2/153 (1%) Query: 27 SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP 86 S E + L+TS+D L+ W R SL M FGL+CC VEMM + RYD+ RFG Sbjct: 2 SERDDEKIPENVLLTSLDDLINWGRANSLWPMFFGLSCCFVEMMTSFTSRYDVSRFGAEV 61 Query: 87 -RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRG 145 R +PR+SD+M++AGT+ KMA ++ R+Y+QM EP++VISMGSCAN GG Y YSVV+G Sbjct: 62 LRGTPRESDLMVIAGTVFKKMAPSILRLYEQMAEPKWVISMGSCANSGGMYDV-YSVVQG 120 Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 ++I+PVD+Y+PGCPP E+ + G++LLQKKIR Sbjct: 121 VNQILPVDLYIPGCPPRPESFLEGLMLLQKKIR 153 >gi|302543443|ref|ZP_07295785.1| NADH dehydrogenase I, B subunit [Streptomyces hygroscopicus ATCC 53653] gi|302461061|gb|EFL24154.1| NADH dehydrogenase I, B subunit [Streptomyces himastatinicus ATCC 53653] Length = 184 Score = 169 bits (429), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 84/150 (56%), Positives = 106/150 (70%), Gaps = 2/150 (1%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RAS 89 E GFL+T+V+Q AR S+ TFGLACCA+EMM RYDL RFG R S Sbjct: 4 EEKLPSGFLLTTVEQAAGLARKSSVFPATFGLACCAIEMMTTGAGRYDLARFGMEVFRGS 63 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQ+D+MIVAG ++ KMA LR+VYDQMP P++VISMG CA+ GG ++ +Y++V+G D I Sbjct: 64 PRQADLMIVAGRVSQKMAPVLRQVYDQMPNPKWVISMGVCASTGGMFN-NYAIVQGVDHI 122 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRR 179 VPVDIY+PGCPP E L+ IL L +KIR Sbjct: 123 VPVDIYLPGCPPRPEMLMDAILKLHEKIRE 152 >gi|282860720|ref|ZP_06269786.1| NADH-quinone oxidoreductase, B subunit [Streptomyces sp. ACTE] gi|282564456|gb|EFB69992.1| NADH-quinone oxidoreductase, B subunit [Streptomyces sp. ACTE] Length = 184 Score = 169 bits (429), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 82/149 (55%), Positives = 106/149 (71%), Gaps = 2/149 (1%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RAS 89 E GF++T+V+Q W R S+ TFGLACCA+EMM RYDL RFG R S Sbjct: 4 EEKLPSGFVLTTVEQAAGWVRKSSVFPATFGLACCAIEMMTTGAGRYDLARFGMEVFRGS 63 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQ+D+MIVAG ++ KMA LR+VYDQMP P++VISMG CA+ GG ++ +Y++V+G D I Sbjct: 64 PRQADLMIVAGRVSQKMAPVLRQVYDQMPSPKWVISMGVCASSGGMFN-NYAIVQGVDHI 122 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIR 178 VPVDIY+PGCPP E L+ IL L +KI+ Sbjct: 123 VPVDIYLPGCPPRPEMLMDAILKLHQKIQ 151 >gi|320160240|ref|YP_004173464.1| NADH-quinone oxidoreductase subunit B [Anaerolinea thermophila UNI-1] gi|319994093|dbj|BAJ62864.1| NADH-quinone oxidoreductase chain B [Anaerolinea thermophila UNI-1] Length = 160 Score = 169 bits (429), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 79/157 (50%), Positives = 112/157 (71%), Gaps = 2/157 (1%) Query: 29 ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-R 87 + ++ + G + +++ V WART ++ M FGLACCA+EMM A YD+ RFG R Sbjct: 3 VEQKLGNMGVVTLKLEEAVNWARTNAMWPMLFGLACCAIEMMAAQASNYDMSRFGMELMR 62 Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCD 147 ASPRQSD+MIVAG ++ KMA LR++YDQMP P++VI+MG CA+ GG ++ +Y++++G D Sbjct: 63 ASPRQSDLMIVAGRVSRKMAPVLRQLYDQMPYPKWVIAMGDCASCGGVFN-NYAILQGVD 121 Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 IVPVD+YV GCPP E LI+G+L L K+R+ VK Sbjct: 122 EIVPVDVYVAGCPPRPEGLIHGVLTLHDKVRKEKLVK 158 >gi|320009166|gb|ADW04016.1| NADH-quinone oxidoreductase, B subunit [Streptomyces flavogriseus ATCC 33331] Length = 205 Score = 169 bits (429), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 79/135 (58%), Positives = 103/135 (76%), Gaps = 1/135 (0%) Query: 46 LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS-PRQSDVMIVAGTLTN 104 ++ W R SL FGLACCA+E + ASM R+D R G P A PRQ+D+M+V+GT+T+ Sbjct: 35 VLNWGRRYSLWVFNFGLACCAIEFIAASMARHDFIRLGVIPFAPGPRQADLMVVSGTVTD 94 Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164 KMA A++R+Y+QMPEP+YVIS G+C+N GG Y SYSV +G D+I+PVD+YVPGCPP E Sbjct: 95 KMAPAVKRLYEQMPEPKYVISFGACSNCGGPYWDSYSVTKGVDQIIPVDVYVPGCPPRPE 154 Query: 165 ALIYGILLLQKKIRR 179 AL+ GIL LQ+KI R Sbjct: 155 ALLQGILKLQEKIAR 169 >gi|290958206|ref|YP_003489388.1| NADH dehydrogenase subunit NuoB2 [Streptomyces scabiei 87.22] gi|260647732|emb|CBG70837.1| NADH dehydrogenase subunit NuoB2 [Streptomyces scabiei 87.22] Length = 226 Score = 169 bits (429), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 79/135 (58%), Positives = 103/135 (76%), Gaps = 1/135 (0%) Query: 46 LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS-PRQSDVMIVAGTLTN 104 ++ W R SL FGLACCA+E + ASM R+D R G P A PRQ+D+M+V+GT+T+ Sbjct: 41 ILNWGRRYSLWVFNFGLACCAIEFIAASMARHDFIRLGVIPFAPGPRQADLMVVSGTVTD 100 Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164 KMA A++R+Y+QMPEP+YVIS G+C+N GG Y SYSV +G D+I+PVD+YVPGCPP E Sbjct: 101 KMAPAVKRLYEQMPEPKYVISFGACSNCGGPYWDSYSVTKGVDQIIPVDVYVPGCPPRPE 160 Query: 165 ALIYGILLLQKKIRR 179 AL+ GIL LQ+KI R Sbjct: 161 ALLQGILKLQEKIAR 175 >gi|326777317|ref|ZP_08236582.1| NAD(P)H-quinone oxidoreductase subunit K [Streptomyces cf. griseus XylebKG-1] gi|326657650|gb|EGE42496.1| NAD(P)H-quinone oxidoreductase subunit K [Streptomyces cf. griseus XylebKG-1] Length = 230 Score = 169 bits (429), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 80/135 (59%), Positives = 103/135 (76%), Gaps = 1/135 (0%) Query: 46 LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS-PRQSDVMIVAGTLTN 104 ++ W R SL FGLACCA+E + ASM R+D R G P A PRQ+D+MIV+GT+T+ Sbjct: 45 VLNWGRRYSLWVFNFGLACCAIEFIAASMARHDFIRLGVIPFAPGPRQADLMIVSGTVTD 104 Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164 KMA A++R+Y+QMPEP+YVIS G+C+N GG Y SYSV +G D+I+PVD+YVPGCPP E Sbjct: 105 KMAPAVKRLYEQMPEPKYVISFGACSNCGGPYWDSYSVTKGVDQIIPVDVYVPGCPPRPE 164 Query: 165 ALIYGILLLQKKIRR 179 AL+ GIL LQ+KI R Sbjct: 165 ALLQGILKLQEKIAR 179 >gi|281419772|ref|ZP_06250771.1| NADH-quinone oxidoreductase chain B [Prevotella copri DSM 18205] gi|281406148|gb|EFB36828.1| NADH-quinone oxidoreductase chain B [Prevotella copri DSM 18205] Length = 241 Score = 169 bits (429), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 74/161 (45%), Positives = 109/161 (67%), Gaps = 3/161 (1%) Query: 21 KVDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78 K + +I+ E+ G +V S+D + W R+ SL +TFG +CC +E M RYD Sbjct: 18 KDNDTLEKIAQELNEGGANVVVGSLDAAINWGRSNSLWSLTFGTSCCGIEFMAVGCARYD 77 Query: 79 LERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137 RFGF R SPRQ+D+++ AGT+TNKMA +R+YD+M EP+YV+++G C GG + Sbjct: 78 FSRFGFEVTRNSPRQADLIMCAGTITNKMAPVFKRLYDEMAEPKYVVAVGGCTISGGPFK 137 Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 SY+VVRG +VPVD+Y+PGCPP EA++YG++ LQ+K++ Sbjct: 138 KSYNVVRGISELVPVDVYIPGCPPRPEAILYGMMQLQRKVK 178 >gi|302559060|ref|ZP_07311402.1| NADH dehydrogenase I, 20 kDa subunit [Streptomyces griseoflavus Tu4000] gi|302476678|gb|EFL39771.1| NADH dehydrogenase I, 20 kDa subunit [Streptomyces griseoflavus Tu4000] Length = 205 Score = 169 bits (429), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 85/175 (48%), Positives = 115/175 (65%), Gaps = 10/175 (5%) Query: 6 VNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACC 65 VN ++G K +R++ E + ++ W R SL FGLACC Sbjct: 3 VNPAAVAGPVPLPEPKRLGALARLAPE---------PMKVVLNWGRRYSLWVFNFGLACC 53 Query: 66 AVEMMQASMPRYDLERFGFAPRA-SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 A+E + ASM R+D R G P A PRQ+D+M+V+GT+T+KMA A++R+Y+QMPEP+YVI Sbjct: 54 AIEFIAASMARHDFIRLGVIPFAPGPRQADLMVVSGTVTDKMAPAVKRLYEQMPEPKYVI 113 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179 S G+C+N GG Y SYSV +G D+I+PVD+YVPGCPP EAL+ GIL LQ+KI R Sbjct: 114 SFGACSNCGGPYWDSYSVTKGVDQIIPVDVYVPGCPPRPEALLQGILKLQEKIAR 168 >gi|302553480|ref|ZP_07305822.1| NADH dehydrogenase subunit I B [Streptomyces viridochromogenes DSM 40736] gi|302471098|gb|EFL34191.1| NADH dehydrogenase subunit I B [Streptomyces viridochromogenes DSM 40736] Length = 206 Score = 169 bits (429), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 79/135 (58%), Positives = 103/135 (76%), Gaps = 1/135 (0%) Query: 46 LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS-PRQSDVMIVAGTLTN 104 ++ W R SL FGLACCA+E + ASM R+D R G P A PRQ+D+M+V+GT+T+ Sbjct: 30 ILNWGRRYSLWVFNFGLACCAIEFIAASMARHDFIRLGVIPFAPGPRQADLMVVSGTVTD 89 Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164 KMA A++R+Y+QMPEP+YVIS G+C+N GG Y SYSV +G D+I+PVD+YVPGCPP E Sbjct: 90 KMAPAVKRLYEQMPEPKYVISFGACSNCGGPYWDSYSVTKGVDQIIPVDVYVPGCPPRPE 149 Query: 165 ALIYGILLLQKKIRR 179 AL+ GIL LQ+KI R Sbjct: 150 ALLQGILKLQEKIAR 164 >gi|288917184|ref|ZP_06411553.1| NADH-quinone oxidoreductase, B subunit [Frankia sp. EUN1f] gi|288351375|gb|EFC85583.1| NADH-quinone oxidoreductase, B subunit [Frankia sp. EUN1f] Length = 264 Score = 169 bits (428), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 80/142 (56%), Positives = 106/142 (74%), Gaps = 2/142 (1%) Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95 G L+T+V+ L W+R SL TFGLACCA+EMM RYDL RFG RASPRQ+D+ Sbjct: 10 GVLLTTVEMLANWSRRSSLWPATFGLACCAIEMMSTGAGRYDLSRFGMEVFRASPRQADL 69 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155 MIVAG ++ KMA LR++YDQMPEP++V+SMG CA+ GG ++ +Y++V+G D IVPVD+Y Sbjct: 70 MIVAGRVSQKMAPVLRQIYDQMPEPKWVLSMGVCASSGGMFN-NYAIVQGVDHIVPVDMY 128 Query: 156 VPGCPPTAEALIYGILLLQKKI 177 +PGCPP E L+ I+ L +KI Sbjct: 129 LPGCPPRPEMLMDAIIKLHEKI 150 >gi|223937077|ref|ZP_03628985.1| NADH-quinone oxidoreductase, B subunit [bacterium Ellin514] gi|223894358|gb|EEF60811.1| NADH-quinone oxidoreductase, B subunit [bacterium Ellin514] Length = 169 Score = 169 bits (428), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 81/142 (57%), Positives = 106/142 (74%), Gaps = 2/142 (1%) Query: 39 LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMI 97 +VT VD + W R SL M GLACCA+E+M A RYD+ RFG R SPRQSDVM+ Sbjct: 18 IVTRVDAALNWFRKNSLWPMPMGLACCAIELMAAGASRYDIARFGSEVMRFSPRQSDVMV 77 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGT+T KMA A++R+YDQMPEP++VI+MG+CA+ GG Y SY+V++G DRI+PVD+YV Sbjct: 78 VAGTVTYKMAMAVKRIYDQMPEPKWVIAMGACASTGGMYR-SYAVLQGVDRIIPVDVYVA 136 Query: 158 GCPPTAEALIYGILLLQKKIRR 179 GCPP EAL+ ++ LQ K+ + Sbjct: 137 GCPPRPEALLDALIKLQNKVSK 158 >gi|225850946|ref|YP_002731180.1| NADH dehydrogenase subunit B [Persephonella marina EX-H1] gi|225646636|gb|ACO04822.1| NADH-quinone oxidoreductase chain b (nadh dehydrogenasei, chain b) (ndh-1, chain b) [Persephonella marina EX-H1] Length = 181 Score = 169 bits (428), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 73/140 (52%), Positives = 108/140 (77%), Gaps = 1/140 (0%) Query: 35 HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSD 94 + G ++T+V+++++W R SL + GLACCA+EMM + R+D +R G R SPRQSD Sbjct: 6 NNGIILTTVEEVLSWGRRNSLWPASVGLACCAIEMMHTAASRFDTDRLGIIFRGSPRQSD 65 Query: 95 VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154 V+IVAGT+ NK+A L+ +YDQMP+P++VI+MG C++ GG + +Y+ ++G DRI+PVD+ Sbjct: 66 VLIVAGTVVNKVAPMLKLIYDQMPDPKWVIAMGGCSSAGGPFP-TYATLQGVDRIIPVDV 124 Query: 155 YVPGCPPTAEALIYGILLLQ 174 YVPGCPPT +AL++GIL LQ Sbjct: 125 YVPGCPPTPQALLWGILELQ 144 >gi|84494897|ref|ZP_00994016.1| putative NADH dehydrogenase I chain B [Janibacter sp. HTCC2649] gi|84384390|gb|EAQ00270.1| putative NADH dehydrogenase I chain B [Janibacter sp. HTCC2649] Length = 212 Score = 169 bits (428), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 77/133 (57%), Positives = 103/133 (77%), Gaps = 1/133 (0%) Query: 46 LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA-SPRQSDVMIVAGTLTN 104 ++ W R SL FGLACCA+E + ASM R+D R G P A PRQ+D+M+V+GT+T+ Sbjct: 28 VLNWGRRYSLWVFNFGLACCAIEFIAASMGRHDFIRLGVIPFAPGPRQADLMVVSGTVTD 87 Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164 KMA A+RR+YDQMPEP+YVIS G+C+N GG Y SYSV +G D+++PVD+YVPGCPP E Sbjct: 88 KMAPAIRRLYDQMPEPKYVISFGACSNSGGPYWDSYSVTKGVDQLIPVDVYVPGCPPRPE 147 Query: 165 ALIYGILLLQKKI 177 AL++GI+ LQ++I Sbjct: 148 ALLHGIIKLQEQI 160 >gi|145596575|ref|YP_001160872.1| NADH-quinone oxidoreductase, B subunit [Salinispora tropica CNB-440] gi|238065041|sp|A4XC37|NUOB2_SALTO RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName: Full=NADH dehydrogenase I subunit B 2; AltName: Full=NDH-1 subunit B 2 gi|145305912|gb|ABP56494.1| NADH-quinone oxidoreductase, B subunit [Salinispora tropica CNB-440] Length = 226 Score = 169 bits (428), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 80/142 (56%), Positives = 108/142 (76%), Gaps = 2/142 (1%) Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95 G L+TSV++ V W+R S+ TFGLACCA+EMM A P YD+ R+G RASPRQ+D+ Sbjct: 10 GVLLTSVEKFVNWSRKSSVWGATFGLACCAIEMMAAGGPHYDMGRWGMEVFRASPRQADL 69 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155 MIVAG ++ KMA LR++YDQM EPR+V+SMG CA+ GG ++ +Y++V+G D +VPVD+Y Sbjct: 70 MIVAGRVSQKMAPVLRQIYDQMAEPRWVLSMGVCASSGGMFN-NYAIVQGVDHVVPVDMY 128 Query: 156 VPGCPPTAEALIYGILLLQKKI 177 +PGCPP E LI IL L++KI Sbjct: 129 LPGCPPRPEMLIDAILKLREKI 150 >gi|255691139|ref|ZP_05414814.1| NADH dehydrogenase I, B subunit [Bacteroides finegoldii DSM 17565] gi|260623232|gb|EEX46103.1| NADH dehydrogenase I, B subunit [Bacteroides finegoldii DSM 17565] Length = 200 Score = 169 bits (428), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 77/162 (47%), Positives = 110/162 (67%), Gaps = 6/162 (3%) Query: 18 SLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRY 77 SLEK+ + + + I + +D + W R+ SL +TF +CC +E M RY Sbjct: 22 SLEKLVKELNAGGANIA-----LGVLDDFINWGRSNSLWPLTFATSCCGIEFMALGAARY 76 Query: 78 DLERFGF-APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY 136 D+ RFGF RASPRQ+D+++V GT+TNKMA L+R+YDQMP+P+YVI++G CA GG + Sbjct: 77 DMARFGFEVARASPRQADMIMVCGTITNKMAPVLKRLYDQMPDPKYVIAVGGCAVSGGPF 136 Query: 137 HYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 SY VV G D+I+PVD+Y+PGCPP EA YG++ LQ+K++ Sbjct: 137 KKSYHVVNGVDKILPVDVYIPGCPPRPEAFYYGMMQLQRKVK 178 >gi|29349474|ref|NP_812977.1| NADH dehydrogenase subunit B [Bacteroides thetaiotaomicron VPI-5482] gi|81586646|sp|Q8A0F5|NUOB_BACTN RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|29341383|gb|AAO79171.1| NADH dehydrogenase I, chain B [Bacteroides thetaiotaomicron VPI-5482] Length = 197 Score = 169 bits (428), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 76/162 (46%), Positives = 111/162 (68%), Gaps = 6/162 (3%) Query: 18 SLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRY 77 SLEK+ + + + + + +D LV W R+ SL +TF +CC +E M RY Sbjct: 22 SLEKLVKELNTGGANV-----FLGVLDDLVNWGRSNSLWPLTFATSCCGIEFMALGAARY 76 Query: 78 DLERFGF-APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY 136 D+ RFGF RASPRQ+D+++V GT+TNKMA L+R+YDQMP+P+YV+++G CA GG + Sbjct: 77 DMARFGFEVARASPRQADMIMVCGTITNKMAPVLKRLYDQMPDPKYVVAVGGCAVSGGPF 136 Query: 137 HYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 SY V+ G D+I+PVD+Y+PGCPP EA YG++ LQ+K++ Sbjct: 137 KKSYHVLNGVDKILPVDVYIPGCPPRPEAFYYGMMQLQRKVK 178 >gi|94969279|ref|YP_591327.1| NADH dehydrogenase subunit B [Candidatus Koribacter versatilis Ellin345] gi|238065004|sp|Q1IPE7|NUOB1_ACIBL RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName: Full=NADH dehydrogenase I subunit B 1; AltName: Full=NDH-1 subunit B 1 gi|94551329|gb|ABF41253.1| NADH dehydrogenase subunit B [Candidatus Koribacter versatilis Ellin345] Length = 213 Score = 169 bits (428), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 79/148 (53%), Positives = 108/148 (72%), Gaps = 2/148 (1%) Query: 32 EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASP 90 E +G ++T++D V W R S+ MTFGLACCA+EMM R+D+ RFG R SP Sbjct: 50 EQPEEGIVLTTLDNAVNWIRKNSIWPMTFGLACCAIEMMSMGASRFDIARFGAEVFRPSP 109 Query: 91 RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150 RQSD+MI+AG ++ KMA +R +Y QMPEP++VISMG+CA GG ++ +Y++V+G ++ + Sbjct: 110 RQSDLMIIAGRVSQKMAPVIRHLYLQMPEPKWVISMGACATSGGVFN-NYALVQGVNQYI 168 Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIR 178 PVDIYVPGCPP E LIY I LLQ+KI+ Sbjct: 169 PVDIYVPGCPPRPEQLIYAITLLQEKIQ 196 >gi|298384973|ref|ZP_06994532.1| proton-translocating NADH-quinone oxidoreductase, B subunit [Bacteroides sp. 1_1_14] gi|298262117|gb|EFI04982.1| proton-translocating NADH-quinone oxidoreductase, B subunit [Bacteroides sp. 1_1_14] Length = 197 Score = 169 bits (428), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 76/162 (46%), Positives = 111/162 (68%), Gaps = 6/162 (3%) Query: 18 SLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRY 77 SLEK+ + + + + + +D LV W R+ SL +TF +CC +E M RY Sbjct: 22 SLEKLVKELNAGGANV-----FLGVLDDLVNWGRSNSLWPLTFATSCCGIEFMALGAARY 76 Query: 78 DLERFGF-APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY 136 D+ RFGF RASPRQ+D+++V GT+TNKMA L+R+YDQMP+P+YV+++G CA GG + Sbjct: 77 DMARFGFEVARASPRQADMIMVCGTITNKMAPVLKRLYDQMPDPKYVVAVGGCAVSGGPF 136 Query: 137 HYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 SY V+ G D+I+PVD+Y+PGCPP EA YG++ LQ+K++ Sbjct: 137 KKSYHVLNGVDKILPVDVYIPGCPPRPEAFYYGMMQLQRKVK 178 >gi|55376749|ref|YP_134600.1| NADH dehydrogenase/oxidoreductase [Haloarcula marismortui ATCC 43049] gi|55229474|gb|AAV44894.1| NADH dehydrogenase/oxidoreductase [Haloarcula marismortui ATCC 43049] Length = 228 Score = 169 bits (428), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 72/141 (51%), Positives = 103/141 (73%), Gaps = 1/141 (0%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQSDVM 96 F++T D + W R S+ + FG+ACC +EMM ++DL+RF PRASPRQ+D++ Sbjct: 40 FILTKFDTFLNWVRGSSMFVLQFGIACCTIEMMGTLATKHDLDRFAAGVPRASPRQADLI 99 Query: 97 IVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV 156 IV GT+ +K A ++RVYDQMPEP++V+SMGSC GG + Y+V++G ++++PVDI+V Sbjct: 100 IVPGTIVSKFAPRMKRVYDQMPEPKFVVSMGSCTISGGPFQEGYNVIKGAEQVIPVDIHV 159 Query: 157 PGCPPTAEALIYGILLLQKKI 177 PGCPP EALIYGI LQ++I Sbjct: 160 PGCPPRPEALIYGIAKLQERI 180 >gi|309812337|ref|ZP_07706092.1| NADH-quinone oxidoreductase, B subunit [Dermacoccus sp. Ellin185] gi|308433642|gb|EFP57519.1| NADH-quinone oxidoreductase, B subunit [Dermacoccus sp. Ellin185] Length = 249 Score = 169 bits (428), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 77/133 (57%), Positives = 100/133 (75%), Gaps = 1/133 (0%) Query: 46 LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS-PRQSDVMIVAGTLTN 104 ++ W R SL FGLACCA+E + SM R+D R G P A PRQ+D+M+V+GT+T+ Sbjct: 53 VLNWGRRYSLWVFNFGLACCAIEFIAGSMSRHDFIRLGVIPFAPGPRQADLMVVSGTVTD 112 Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164 KMA A+RR+YDQMPEP+YVIS G+C+N GG Y SYSV +G D++VPVD+YVPGCPP E Sbjct: 113 KMAPAVRRLYDQMPEPKYVISFGACSNSGGPYWDSYSVTKGVDQLVPVDVYVPGCPPRPE 172 Query: 165 ALIYGILLLQKKI 177 AL+ GI+ LQ +I Sbjct: 173 ALLQGIVTLQNQI 185 >gi|269128612|ref|YP_003301982.1| NADH-quinone oxidoreductase subunit B [Thermomonospora curvata DSM 43183] gi|268313570|gb|ACY99944.1| NADH-quinone oxidoreductase, B subunit [Thermomonospora curvata DSM 43183] Length = 183 Score = 169 bits (427), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 81/143 (56%), Positives = 107/143 (74%), Gaps = 2/143 (1%) Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQSDV 95 GFL+T+V+Q+V WAR S TFGLACCA+EMM A PR+D R+G A+PRQ+D+ Sbjct: 10 GFLLTTVEQVVGWARRSSTWPATFGLACCAIEMMAAGDPRHDFSRWGMERASATPRQADL 69 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155 MIVAG ++ KMA LR++YDQM EP++VI+MG CA+ GG ++ +Y+VV+G D IVPVDIY Sbjct: 70 MIVAGRVSQKMAPVLRQIYDQMTEPKWVIAMGVCASSGGMFN-NYAVVQGVDHIVPVDIY 128 Query: 156 VPGCPPTAEALIYGILLLQKKIR 178 +PGCPP E LI I+ L KI+ Sbjct: 129 LPGCPPRPEMLIDAIVKLHDKIQ 151 >gi|29831425|ref|NP_826059.1| NADH dehydrogenase I chain B [Streptomyces avermitilis MA-4680] gi|81718089|sp|Q82DT6|NUOB2_STRAW RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName: Full=NADH dehydrogenase I subunit B 2; AltName: Full=NDH-1 subunit B 2 gi|29608540|dbj|BAC72594.1| putative NADH dehydrogenase I chain B (complex I) [Streptomyces avermitilis MA-4680] Length = 203 Score = 169 bits (427), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 79/135 (58%), Positives = 103/135 (76%), Gaps = 1/135 (0%) Query: 46 LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS-PRQSDVMIVAGTLTN 104 ++ W R SL FGLACCA+E + ASM R+D R G P A PRQ+D+M+V+GT+T+ Sbjct: 30 VLNWGRRYSLWVFNFGLACCAIEFIAASMARHDFIRLGVIPFAPGPRQADLMVVSGTVTD 89 Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164 KMA A++R+Y+QMPEP+YVIS G+C+N GG Y SYSV +G D+I+PVD+YVPGCPP E Sbjct: 90 KMAPAVKRLYEQMPEPKYVISFGACSNCGGPYWDSYSVTKGVDQIIPVDVYVPGCPPRPE 149 Query: 165 ALIYGILLLQKKIRR 179 AL+ GIL LQ+KI R Sbjct: 150 ALLQGILKLQEKIAR 164 >gi|238065263|sp|Q0RRW7|NUOB_FRAAA RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B Length = 281 Score = 169 bits (427), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 80/142 (56%), Positives = 106/142 (74%), Gaps = 2/142 (1%) Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95 G L+ SV++L W+R SL TFGLACCA+EMM RYDL RFG RASPRQ+D+ Sbjct: 10 GVLLASVEKLANWSRRSSLWPATFGLACCAIEMMSTGAGRYDLSRFGMEVFRASPRQADL 69 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155 MIVAG ++ KMA LR++YDQMPEP++V+SMG CA+ GG ++ +Y++V+G D IVPVD+Y Sbjct: 70 MIVAGRVSQKMAPVLRQIYDQMPEPKWVLSMGVCASSGGMFN-NYAIVQGVDHIVPVDMY 128 Query: 156 VPGCPPTAEALIYGILLLQKKI 177 +PGCPP E L+ I+ L +KI Sbjct: 129 LPGCPPRPEMLMDAIIKLHEKI 150 >gi|291298799|ref|YP_003510077.1| NADH-quinone oxidoreductase subunit B [Stackebrandtia nassauensis DSM 44728] gi|290568019|gb|ADD40984.1| NADH-quinone oxidoreductase, B subunit [Stackebrandtia nassauensis DSM 44728] Length = 216 Score = 169 bits (427), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 80/142 (56%), Positives = 103/142 (72%), Gaps = 2/142 (1%) Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95 G L+TSV++LV W R S TFGLACCA+EMM RYD RFG RASPRQ+D+ Sbjct: 10 GILLTSVEKLVNWTRKASFWPATFGLACCAIEMMATGAARYDTARFGMEVFRASPRQADL 69 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155 MIVAG ++ KMA LR++YDQM EP++V+SMG CA+ GG ++ +Y++V+G D +VPVDIY Sbjct: 70 MIVAGRVSQKMAPVLRQIYDQMSEPKWVLSMGVCASSGGMFN-NYAIVQGVDHVVPVDIY 128 Query: 156 VPGCPPTAEALIYGILLLQKKI 177 +PGCPP E L+ IL L KI Sbjct: 129 LPGCPPRPEMLLDAILKLHDKI 150 >gi|86739252|ref|YP_479652.1| NADH dehydrogenase subunit B [Frankia sp. CcI3] gi|123765293|sp|Q2JFL9|NUOB_FRASC RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|86566114|gb|ABD09923.1| NADH dehydrogenase subunit B [Frankia sp. CcI3] Length = 271 Score = 169 bits (427), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 80/142 (56%), Positives = 106/142 (74%), Gaps = 2/142 (1%) Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95 G L+ SV++L W+R SL TFGLACCA+EMM RYDL RFG RASPRQ+D+ Sbjct: 10 GVLLASVEKLANWSRRSSLWPATFGLACCAIEMMSTGAGRYDLSRFGMEVFRASPRQADL 69 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155 MIVAG ++ KMA LR++YDQMPEP++V+SMG CA+ GG ++ +Y++V+G D IVPVD+Y Sbjct: 70 MIVAGRVSQKMAPVLRQIYDQMPEPKWVLSMGVCASSGGMFN-NYAIVQGVDHIVPVDMY 128 Query: 156 VPGCPPTAEALIYGILLLQKKI 177 +PGCPP E L+ I+ L +KI Sbjct: 129 LPGCPPRPEMLMDAIIKLHEKI 150 >gi|262200419|ref|YP_003271627.1| NADH-quinone oxidoreductase subunit B [Gordonia bronchialis DSM 43247] gi|262083766|gb|ACY19734.1| NADH-quinone oxidoreductase, B subunit [Gordonia bronchialis DSM 43247] Length = 184 Score = 169 bits (427), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 80/145 (55%), Positives = 111/145 (76%), Gaps = 2/145 (1%) Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APRASPRQSDV 95 GFL+++V++L + R GSL TFGLACCA+EMM + RYDL RFG A RASPRQ+D+ Sbjct: 10 GFLLSTVEELAGFMRKGSLWPATFGLACCAIEMMATTSGRYDLARFGMEAFRASPRQADL 69 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155 MIVAG ++ KMA LR++YDQM EP++V++MG CA+ GG ++ +Y++V+G D +VPVDIY Sbjct: 70 MIVAGRVSQKMAPVLRQIYDQMVEPKWVLAMGVCASSGGMFN-NYAIVQGVDHVVPVDIY 128 Query: 156 VPGCPPTAEALIYGILLLQKKIRRV 180 +PGCPP E L+ IL L +KI+ + Sbjct: 129 LPGCPPRPEMLLNAILKLHEKIQEM 153 >gi|291437889|ref|ZP_06577279.1| NADH dehydrogenase subunit NuoB2 [Streptomyces ghanaensis ATCC 14672] gi|291340784|gb|EFE67740.1| NADH dehydrogenase subunit NuoB2 [Streptomyces ghanaensis ATCC 14672] Length = 229 Score = 169 bits (427), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 79/135 (58%), Positives = 103/135 (76%), Gaps = 1/135 (0%) Query: 46 LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA-SPRQSDVMIVAGTLTN 104 ++ W R SL FGLACCA+E + ASM R+D R G P A PRQ+D+M+V+GT+T+ Sbjct: 46 VLNWGRRYSLWVFNFGLACCAIEFIAASMARHDFIRLGVIPFAPGPRQADLMVVSGTVTD 105 Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164 KMA A++R+Y+QMPEP+YVIS G+C+N GG Y SYSV +G D+I+PVD+YVPGCPP E Sbjct: 106 KMAPAVKRLYEQMPEPKYVISFGACSNCGGPYWDSYSVTKGVDQIIPVDVYVPGCPPRPE 165 Query: 165 ALIYGILLLQKKIRR 179 AL+ GIL LQ+KI R Sbjct: 166 ALLQGILKLQEKIAR 180 >gi|239929563|ref|ZP_04686516.1| NADH dehydrogenase I chain B [Streptomyces ghanaensis ATCC 14672] Length = 231 Score = 169 bits (427), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 79/135 (58%), Positives = 103/135 (76%), Gaps = 1/135 (0%) Query: 46 LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA-SPRQSDVMIVAGTLTN 104 ++ W R SL FGLACCA+E + ASM R+D R G P A PRQ+D+M+V+GT+T+ Sbjct: 48 VLNWGRRYSLWVFNFGLACCAIEFIAASMARHDFIRLGVIPFAPGPRQADLMVVSGTVTD 107 Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164 KMA A++R+Y+QMPEP+YVIS G+C+N GG Y SYSV +G D+I+PVD+YVPGCPP E Sbjct: 108 KMAPAVKRLYEQMPEPKYVISFGACSNCGGPYWDSYSVTKGVDQIIPVDVYVPGCPPRPE 167 Query: 165 ALIYGILLLQKKIRR 179 AL+ GIL LQ+KI R Sbjct: 168 ALLQGILKLQEKIAR 182 >gi|296268308|ref|YP_003650940.1| NADH-quinone oxidoreductase subunit B [Thermobispora bispora DSM 43833] gi|296091095|gb|ADG87047.1| NADH-quinone oxidoreductase, B subunit [Thermobispora bispora DSM 43833] Length = 170 Score = 169 bits (427), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 78/133 (58%), Positives = 104/133 (78%), Gaps = 1/133 (0%) Query: 46 LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS-PRQSDVMIVAGTLTN 104 ++ W R SL FGLACCA+E + SM R+D RFG P A+ PRQ+D+MIV+GT+T+ Sbjct: 23 VLNWGRRYSLWVFNFGLACCAIEFIATSMSRHDFIRFGVIPFANGPRQADLMIVSGTVTD 82 Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164 KMA A++R+Y+QMP+P+YVIS G+C+N GG Y SYSV +G D+I+PVD+YVPGCPP E Sbjct: 83 KMAPAVKRLYEQMPDPKYVISFGACSNCGGPYWDSYSVTKGVDQIIPVDVYVPGCPPRPE 142 Query: 165 ALIYGILLLQKKI 177 AL++GIL LQ+KI Sbjct: 143 ALLHGILKLQEKI 155 >gi|21222983|ref|NP_628762.1| NADH dehydrogenase subunit NuoB2 [Streptomyces coelicolor A3(2)] gi|81621857|sp|Q9F2W1|NUOB2_STRCO RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName: Full=NADH dehydrogenase I subunit B 2; AltName: Full=NDH-1 subunit B 2 gi|10129745|emb|CAC08301.1| NADH dehydrogenase subunit NuoB2 [Streptomyces coelicolor A3(2)] Length = 232 Score = 169 bits (427), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 79/135 (58%), Positives = 103/135 (76%), Gaps = 1/135 (0%) Query: 46 LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS-PRQSDVMIVAGTLTN 104 ++ W R SL FGLACCA+E + ASM R+D R G P A PRQ+D+M+V+GT+T+ Sbjct: 34 VLNWGRRYSLWVFNFGLACCAIEFIAASMARHDFIRLGVIPFAPGPRQADLMVVSGTVTD 93 Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164 KMA A++R+Y+QMPEP+YVIS G+C+N GG Y SYSV +G D+I+PVD+YVPGCPP E Sbjct: 94 KMAPAVKRLYEQMPEPKYVISFGACSNCGGPYWDSYSVTKGVDQIIPVDVYVPGCPPRPE 153 Query: 165 ALIYGILLLQKKIRR 179 AL+ GIL LQ+KI R Sbjct: 154 ALLQGILKLQEKIAR 168 >gi|256785904|ref|ZP_05524335.1| NADH dehydrogenase subunit NuoB2 [Streptomyces lividans TK24] Length = 232 Score = 168 bits (426), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 79/135 (58%), Positives = 103/135 (76%), Gaps = 1/135 (0%) Query: 46 LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS-PRQSDVMIVAGTLTN 104 ++ W R SL FGLACCA+E + ASM R+D R G P A PRQ+D+M+V+GT+T+ Sbjct: 36 VLNWGRRYSLWVFNFGLACCAIEFIAASMARHDFIRLGVIPFAPGPRQADLMVVSGTVTD 95 Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164 KMA A++R+Y+QMPEP+YVIS G+C+N GG Y SYSV +G D+I+PVD+YVPGCPP E Sbjct: 96 KMAPAVKRLYEQMPEPKYVISFGACSNCGGPYWDSYSVTKGVDQIIPVDVYVPGCPPRPE 155 Query: 165 ALIYGILLLQKKIRR 179 AL+ GIL LQ+KI R Sbjct: 156 ALLQGILKLQEKIAR 170 >gi|159036128|ref|YP_001535381.1| NADH-quinone oxidoreductase, B subunit [Salinispora arenicola CNS-205] gi|238065019|sp|A8M069|NUOB1_SALAI RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName: Full=NADH dehydrogenase I subunit B 1; AltName: Full=NDH-1 subunit B 1 gi|157914963|gb|ABV96390.1| NADH-quinone oxidoreductase, B subunit [Salinispora arenicola CNS-205] Length = 188 Score = 168 bits (426), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 78/137 (56%), Positives = 103/137 (75%), Gaps = 1/137 (0%) Query: 46 LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA-SPRQSDVMIVAGTLTN 104 ++ W R SL FGLACCA+E + SM R+D R G P A PRQ+D+M+V+GT+T+ Sbjct: 14 VLNWGRRYSLWVFNFGLACCAIEFIATSMSRHDFMRLGVIPFAHGPRQADLMVVSGTVTD 73 Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164 KMA A++R+YDQMPEP+YVIS G+C+N GG Y SYSV +G D+++PVD+YVPGCPP E Sbjct: 74 KMAPAIKRLYDQMPEPKYVISFGACSNCGGPYWDSYSVTKGVDQLIPVDVYVPGCPPRPE 133 Query: 165 ALIYGILLLQKKIRRVG 181 AL++GIL LQ+KI G Sbjct: 134 ALLHGILRLQEKIAAEG 150 >gi|46446194|ref|YP_007559.1| NADH-ubiquinone oxidoreductase chain B [Candidatus Protochlamydia amoebophila UWE25] gi|81627441|sp|Q6MDR5|NUOB_PARUW RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|46399835|emb|CAF23284.1| probable NADH-ubiquinone oxidoreductase chain B [Candidatus Protochlamydia amoebophila UWE25] Length = 164 Score = 168 bits (426), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 78/142 (54%), Positives = 108/142 (76%), Gaps = 2/142 (1%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVM 96 FL+ +++LV WAR+ SL FGLACCA+EMM + RYDL RFG RASPRQSDVM Sbjct: 12 FLIAPLEKLVNWARSNSLWPAQFGLACCAIEMMSTAASRYDLARFGMEVFRASPRQSDVM 71 Query: 97 IVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV 156 IVAG ++ KMA L+ +Y+QM EP++VI+MG CA+ GG Y+ +Y++++G D++VPVD+Y+ Sbjct: 72 IVAGRVSQKMAPVLQTIYEQMLEPKWVIAMGDCASCGGVYN-NYAIIQGVDKLVPVDVYL 130 Query: 157 PGCPPTAEALIYGILLLQKKIR 178 GCPP EALI +++LQ KI+ Sbjct: 131 AGCPPRPEALIDALIMLQNKIK 152 >gi|257054393|ref|YP_003132225.1| NADH dehydrogenase subunit B [Saccharomonospora viridis DSM 43017] gi|256584265|gb|ACU95398.1| NADH dehydrogenase subunit B [Saccharomonospora viridis DSM 43017] Length = 182 Score = 168 bits (426), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 81/151 (53%), Positives = 110/151 (72%), Gaps = 6/151 (3%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFG---FAPR 87 E GFL+T+++ +V WAR S+ TFGLACCA+EMM RYD+ RFG FA Sbjct: 4 EEKLPNGFLLTTLEGVVNWARKNSMWPATFGLACCAIEMMTTGGSRYDIARFGMERFA-- 61 Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCD 147 A+PRQ+D+MIVAG +T KMA LR++YDQMPEP++V++MG CA+ GG ++ +Y+VV+G D Sbjct: 62 ATPRQADLMIVAGRVTQKMAPVLRQIYDQMPEPKWVLAMGVCASSGGMFN-NYAVVQGVD 120 Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 IVPVD+Y+PGCPP E L+ IL L K++ Sbjct: 121 HIVPVDMYLPGCPPRPEMLLDAILKLHAKVQ 151 >gi|255007685|ref|ZP_05279811.1| NADH-quinone oxidoreductase chain B [Bacteroides fragilis 3_1_12] Length = 196 Score = 168 bits (426), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 77/162 (47%), Positives = 110/162 (67%), Gaps = 6/162 (3%) Query: 18 SLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRY 77 SLEK+ + + + + V +D L+ W R+ SL +TF +CC +E M RY Sbjct: 22 SLEKMVKELNEGGANV-----FVGVLDDLINWGRSNSLWPLTFATSCCGIEFMALGAARY 76 Query: 78 DLERFGF-APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY 136 D+ RFGF RASPRQ+D+++V GT+TNKMA L+R+YDQM +P+YVI++G CA GG + Sbjct: 77 DMARFGFEVARASPRQADMIMVCGTITNKMAPVLKRLYDQMADPKYVIAVGGCAVSGGPF 136 Query: 137 HYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 SY VV G D+I+PVD+Y+PGCPP EA YG++ LQ+K++ Sbjct: 137 RKSYHVVNGVDKILPVDVYIPGCPPRPEAFYYGMMQLQRKVK 178 >gi|53712161|ref|YP_098153.1| NADH dehydrogenase subunit B [Bacteroides fragilis YCH46] gi|60680345|ref|YP_210489.1| NADH dehydrogenase subunit B [Bacteroides fragilis NCTC 9343] gi|253563801|ref|ZP_04841258.1| NADH dehydrogenase I [Bacteroides sp. 3_2_5] gi|265765492|ref|ZP_06093767.1| NADH dehydrogenase I [Bacteroides sp. 2_1_16] gi|81316585|sp|Q5LH49|NUOB_BACFN RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|81608667|sp|Q64Y07|NUOB_BACFR RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|52215026|dbj|BAD47619.1| NADH dehydrogenase I chain B [Bacteroides fragilis YCH46] gi|60491779|emb|CAH06537.1| NADH-quinone oxidoreductase chain B [Bacteroides fragilis NCTC 9343] gi|251947577|gb|EES87859.1| NADH dehydrogenase I [Bacteroides sp. 3_2_5] gi|263254876|gb|EEZ26310.1| NADH dehydrogenase I [Bacteroides sp. 2_1_16] gi|301161878|emb|CBW21422.1| NADH-quinone oxidoreductase chain B [Bacteroides fragilis 638R] Length = 196 Score = 168 bits (426), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 77/162 (47%), Positives = 110/162 (67%), Gaps = 6/162 (3%) Query: 18 SLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRY 77 SLEK+ + + + + V +D L+ W R+ SL +TF +CC +E M RY Sbjct: 22 SLEKMVKELNEGGANV-----FVGVLDDLINWGRSNSLWPLTFATSCCGIEFMALGAARY 76 Query: 78 DLERFGF-APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY 136 D+ RFGF RASPRQ+D+++V GT+TNKMA L+R+YDQM +P+YVI++G CA GG + Sbjct: 77 DMARFGFEVARASPRQADMIMVCGTITNKMAPVLKRLYDQMADPKYVIAVGGCAVSGGPF 136 Query: 137 HYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 SY VV G D+I+PVD+Y+PGCPP EA YG++ LQ+K++ Sbjct: 137 RKSYHVVNGVDKILPVDVYIPGCPPRPEAFYYGMMQLQRKVK 178 >gi|311896699|dbj|BAJ29107.1| putative NADH-quinone oxidoreductase subunit B [Kitasatospora setae KM-6054] Length = 209 Score = 168 bits (426), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 80/137 (58%), Positives = 103/137 (75%), Gaps = 1/137 (0%) Query: 42 SVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS-PRQSDVMIVAG 100 V ++ W R SL FGLACCA+E + ASM ++D R G P A PRQ+D+MIV+G Sbjct: 44 PVKVVLNWGRRYSLWCFNFGLACCAIEFIAASMAKHDFIRMGVIPFAPGPRQADLMIVSG 103 Query: 101 TLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCP 160 T+T+KMA A++R+Y+QMPEP+YVIS G+CAN GG Y SYSV +G D+I+PVD+YVPGCP Sbjct: 104 TVTDKMAPAVKRLYEQMPEPKYVISFGACANSGGPYWDSYSVTKGVDQIIPVDVYVPGCP 163 Query: 161 PTAEALIYGILLLQKKI 177 P EAL+ GIL LQ+KI Sbjct: 164 PRPEALLQGILKLQEKI 180 >gi|313145380|ref|ZP_07807573.1| trifunctional NADH dehydrogenase I subunit B/C/D [Bacteroides fragilis 3_1_12] gi|313134147|gb|EFR51507.1| trifunctional NADH dehydrogenase I subunit B/C/D [Bacteroides fragilis 3_1_12] Length = 203 Score = 168 bits (426), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 77/162 (47%), Positives = 110/162 (67%), Gaps = 6/162 (3%) Query: 18 SLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRY 77 SLEK+ + + + + V +D L+ W R+ SL +TF +CC +E M RY Sbjct: 29 SLEKMVKELNEGGANV-----FVGVLDDLINWGRSNSLWPLTFATSCCGIEFMALGAARY 83 Query: 78 DLERFGF-APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY 136 D+ RFGF RASPRQ+D+++V GT+TNKMA L+R+YDQM +P+YVI++G CA GG + Sbjct: 84 DMARFGFEVARASPRQADMIMVCGTITNKMAPVLKRLYDQMADPKYVIAVGGCAVSGGPF 143 Query: 137 HYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 SY VV G D+I+PVD+Y+PGCPP EA YG++ LQ+K++ Sbjct: 144 RKSYHVVNGVDKILPVDVYIPGCPPRPEAFYYGMMQLQRKVK 185 >gi|148262416|ref|YP_001229122.1| trifunctional NADH dehydrogenase I subunit B/C/D [Geobacter uraniireducens Rf4] gi|218528048|sp|A5GCZ4|NUBCD_GEOUR RecName: Full=NADH-quinone oxidoreductase subunit B/C/D; AltName: Full=NADH dehydrogenase I subunit B/C/D; AltName: Full=NDH-1 subunit B/C/D gi|146395916|gb|ABQ24549.1| NADH dehydrogenase subunit D / NADH dehydrogenase subunit B / NADH dehydrogenase subunit C [Geobacter uraniireducens Rf4] Length = 793 Score = 168 bits (426), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 77/145 (53%), Positives = 107/145 (73%), Gaps = 2/145 (1%) Query: 35 HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQS 93 H ++ ++D L+ W R SL M FGL+CC VEMM + RYD+ RFG R +PR++ Sbjct: 9 HNNVILANLDDLINWGRANSLWPMFFGLSCCFVEMMTSFTSRYDISRFGAEVLRGTPREA 68 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD 153 D+M++AGT+ KMA ++ R+Y+QM EPR+VISMGSCAN GG Y YSVV+G ++I+PVD Sbjct: 69 DLMVIAGTVFKKMAPSILRLYEQMAEPRWVISMGSCANSGGMYDV-YSVVQGVNQIIPVD 127 Query: 154 IYVPGCPPTAEALIYGILLLQKKIR 178 +YVPGCPP EA + G++LLQ+KI+ Sbjct: 128 VYVPGCPPRPEAFLQGLMLLQEKIK 152 >gi|48478473|ref|YP_024179.1| NADH dehydrogenase subunit B [Picrophilus torridus DSM 9790] gi|48431121|gb|AAT43986.1| NADH-quinone oxidoreductase chain B [Picrophilus torridus DSM 9790] Length = 154 Score = 168 bits (426), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 81/143 (56%), Positives = 105/143 (73%), Gaps = 1/143 (0%) Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95 G+ +T+V++ + WAR+ SL +T GLACCA+EMM D+ RFG R SPRQ+D+ Sbjct: 7 GYQLTTVEKALEWARSNSLWPLTMGLACCAIEMMATQGSNLDIARFGSEIFRNSPRQADL 66 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155 MIVAGT T +MA +RR+Y++MP P+YVI+MG C GG Y YSVV G DR++PVD+Y Sbjct: 67 MIVAGTTTKRMAPRVRRIYEEMPYPKYVIAMGVCVIQGGPYVDGYSVVLGVDRVIPVDVY 126 Query: 156 VPGCPPTAEALIYGILLLQKKIR 178 VPGCPP+ +AL GILLLQKKIR Sbjct: 127 VPGCPPSPQALTNGILLLQKKIR 149 >gi|307328659|ref|ZP_07607832.1| NADH-quinone oxidoreductase, B subunit [Streptomyces violaceusniger Tu 4113] gi|306885771|gb|EFN16784.1| NADH-quinone oxidoreductase, B subunit [Streptomyces violaceusniger Tu 4113] Length = 231 Score = 168 bits (426), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 78/135 (57%), Positives = 103/135 (76%), Gaps = 1/135 (0%) Query: 46 LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS-PRQSDVMIVAGTLTN 104 ++ W R SL FGLACCA+E + ASM R+D R G P A PRQ+D+M+V+GT+T+ Sbjct: 56 VLNWGRRYSLWVFNFGLACCAIEFIAASMARHDFIRLGVIPFAPGPRQADLMVVSGTVTD 115 Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164 KMA A++R+Y+QMPEP+YVIS G+C+N GG Y SY+V +G D+I+PVD+YVPGCPP E Sbjct: 116 KMAPAVKRLYEQMPEPKYVISFGACSNCGGPYWDSYAVTKGVDQIIPVDVYVPGCPPRPE 175 Query: 165 ALIYGILLLQKKIRR 179 AL+ GIL LQ+KI R Sbjct: 176 ALLQGILKLQEKIAR 190 >gi|289769797|ref|ZP_06529175.1| NADH dehydrogenase subunit NuoB2 [Streptomyces lividans TK24] gi|289699996|gb|EFD67425.1| NADH dehydrogenase subunit NuoB2 [Streptomyces lividans TK24] Length = 219 Score = 168 bits (426), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 79/135 (58%), Positives = 103/135 (76%), Gaps = 1/135 (0%) Query: 46 LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS-PRQSDVMIVAGTLTN 104 ++ W R SL FGLACCA+E + ASM R+D R G P A PRQ+D+M+V+GT+T+ Sbjct: 23 VLNWGRRYSLWVFNFGLACCAIEFIAASMARHDFIRLGVIPFAPGPRQADLMVVSGTVTD 82 Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164 KMA A++R+Y+QMPEP+YVIS G+C+N GG Y SYSV +G D+I+PVD+YVPGCPP E Sbjct: 83 KMAPAVKRLYEQMPEPKYVISFGACSNCGGPYWDSYSVTKGVDQIIPVDVYVPGCPPRPE 142 Query: 165 ALIYGILLLQKKIRR 179 AL+ GIL LQ+KI R Sbjct: 143 ALLQGILKLQEKIAR 157 >gi|237714284|ref|ZP_04544765.1| trifunctional NADH dehydrogenase I subunit B/C/D [Bacteroides sp. D1] gi|229445776|gb|EEO51567.1| trifunctional NADH dehydrogenase I subunit B/C/D [Bacteroides sp. D1] Length = 207 Score = 168 bits (426), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 71/137 (51%), Positives = 100/137 (72%), Gaps = 1/137 (0%) Query: 43 VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APRASPRQSDVMIVAGT 101 +D + W R+ SL +TF +CC +E M RYD+ RFGF RASPRQ+D+++V GT Sbjct: 49 LDDFINWGRSNSLWPLTFATSCCGIEFMALGAARYDMARFGFEVARASPRQADMIMVCGT 108 Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP 161 +TNKMA L+R+YDQMP+P+YV+++G CA GG + SY VV G D+I+PVD+Y+PGCPP Sbjct: 109 ITNKMAPVLKRLYDQMPDPKYVVAVGGCAVSGGPFKKSYHVVNGVDKILPVDVYIPGCPP 168 Query: 162 TAEALIYGILLLQKKIR 178 EA YG++ LQ+K++ Sbjct: 169 RPEAFYYGMMQLQRKVK 185 >gi|332881564|ref|ZP_08449213.1| NADH-quinone oxidoreductase subunit B [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332680562|gb|EGJ53510.1| NADH-quinone oxidoreductase subunit B [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 204 Score = 168 bits (426), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 73/143 (51%), Positives = 103/143 (72%), Gaps = 1/143 (0%) Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQSDV 95 G ++ ++D L+ W R+ SL +TFG +CCA+E M RYD+ RFGF R SPRQ+D+ Sbjct: 37 GIVLGTLDDLINWGRSNSLWSLTFGTSCCAIEFMALGAARYDMARFGFEVTRNSPRQADM 96 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155 ++V GT+T +MA L+R+YDQM EP+YV+++G C GG + SY VV G DRI+PVD+Y Sbjct: 97 IMVLGTITYRMAPVLKRLYDQMAEPKYVVAVGGCTISGGPFRRSYHVVNGIDRIIPVDVY 156 Query: 156 VPGCPPTAEALIYGILLLQKKIR 178 +PGCPP EA YG++ LQ+KI+ Sbjct: 157 IPGCPPRPEAFFYGMMQLQRKIK 179 >gi|160886847|ref|ZP_02067850.1| hypothetical protein BACOVA_04861 [Bacteroides ovatus ATCC 8483] gi|260171803|ref|ZP_05758215.1| NADH dehydrogenase I, chain B [Bacteroides sp. D2] gi|299148405|ref|ZP_07041467.1| proton-translocating NADH-quinone oxidoreductase, B subunit [Bacteroides sp. 3_1_23] gi|315920115|ref|ZP_07916355.1| NADH-quinone oxidoreductase [Bacteroides sp. D2] gi|156107258|gb|EDO09003.1| hypothetical protein BACOVA_04861 [Bacteroides ovatus ATCC 8483] gi|298513166|gb|EFI37053.1| proton-translocating NADH-quinone oxidoreductase, B subunit [Bacteroides sp. 3_1_23] gi|313693990|gb|EFS30825.1| NADH-quinone oxidoreductase [Bacteroides sp. D2] Length = 200 Score = 168 bits (426), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 71/137 (51%), Positives = 100/137 (72%), Gaps = 1/137 (0%) Query: 43 VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APRASPRQSDVMIVAGT 101 +D + W R+ SL +TF +CC +E M RYD+ RFGF RASPRQ+D+++V GT Sbjct: 42 LDDFINWGRSNSLWPLTFATSCCGIEFMALGAARYDMARFGFEVARASPRQADMIMVCGT 101 Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP 161 +TNKMA L+R+YDQMP+P+YV+++G CA GG + SY VV G D+I+PVD+Y+PGCPP Sbjct: 102 ITNKMAPVLKRLYDQMPDPKYVVAVGGCAVSGGPFKKSYHVVNGVDKILPVDVYIPGCPP 161 Query: 162 TAEALIYGILLLQKKIR 178 EA YG++ LQ+K++ Sbjct: 162 RPEAFYYGMMQLQRKVK 178 >gi|145592956|ref|YP_001157253.1| NADH-quinone oxidoreductase, B subunit [Salinispora tropica CNB-440] gi|238065020|sp|A4X1X5|NUOB1_SALTO RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName: Full=NADH dehydrogenase I subunit B 1; AltName: Full=NDH-1 subunit B 1 gi|145302293|gb|ABP52875.1| NADH-quinone oxidoreductase, B subunit [Salinispora tropica CNB-440] Length = 188 Score = 168 bits (426), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 77/133 (57%), Positives = 102/133 (76%), Gaps = 1/133 (0%) Query: 46 LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA-SPRQSDVMIVAGTLTN 104 ++ W R SL FGLACCA+E + SM R+D R G P A PRQ+D+M+V+GT+T+ Sbjct: 14 VLNWGRRYSLWVFNFGLACCAIEFIATSMSRHDFMRLGVIPFAHGPRQADLMVVSGTVTD 73 Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164 KMA A++R+YDQMPEP+YVIS G+C+N GG Y SYSV +G D+++PVD+YVPGCPP E Sbjct: 74 KMAPAIKRLYDQMPEPKYVISFGACSNCGGPYWDSYSVTKGVDQLIPVDVYVPGCPPRPE 133 Query: 165 ALIYGILLLQKKI 177 AL++GIL LQ+KI Sbjct: 134 ALLHGILRLQEKI 146 >gi|239980104|ref|ZP_04702628.1| NADH dehydrogenase subunit NuoB2 [Streptomyces albus J1074] Length = 216 Score = 168 bits (425), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 78/135 (57%), Positives = 103/135 (76%), Gaps = 1/135 (0%) Query: 46 LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS-PRQSDVMIVAGTLTN 104 ++ W R SL FGLACCA+E + ASM R+D R G P A PRQ+D+M+V+GT+T+ Sbjct: 41 VLNWGRRYSLWVFNFGLACCAIEFIAASMARHDFMRLGVIPFAPGPRQADLMVVSGTVTD 100 Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164 KMA A++R+Y+QMPEP+YVIS G+C+N GG Y SYSV +G D+I+PVD+YVPGCPP E Sbjct: 101 KMAPAVKRLYEQMPEPKYVISFGACSNCGGPYWDSYSVTKGVDQIIPVDVYVPGCPPRPE 160 Query: 165 ALIYGILLLQKKIRR 179 AL+ GI+ LQ+KI R Sbjct: 161 ALLQGIIKLQEKIAR 175 >gi|153807451|ref|ZP_01960119.1| hypothetical protein BACCAC_01731 [Bacteroides caccae ATCC 43185] gi|149129813|gb|EDM21025.1| hypothetical protein BACCAC_01731 [Bacteroides caccae ATCC 43185] Length = 200 Score = 168 bits (425), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 71/137 (51%), Positives = 100/137 (72%), Gaps = 1/137 (0%) Query: 43 VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APRASPRQSDVMIVAGT 101 +D + W R+ SL +TF +CC +E M RYD+ RFGF RASPRQ+D+++V GT Sbjct: 42 LDDFINWGRSNSLWPLTFATSCCGIEFMALGAARYDMARFGFEVARASPRQADMIMVCGT 101 Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP 161 +TNKMA L+R+YDQMP+P+YV+++G CA GG + SY VV G D+I+PVD+Y+PGCPP Sbjct: 102 ITNKMAPVLKRLYDQMPDPKYVVAVGGCAVSGGPFKKSYHVVNGVDKILPVDVYIPGCPP 161 Query: 162 TAEALIYGILLLQKKIR 178 EA YG++ LQ+K++ Sbjct: 162 RPEAFYYGMMQLQRKVK 178 >gi|226306213|ref|YP_002766173.1| NADH-quinone oxidoreductase chain B [Rhodococcus erythropolis PR4] gi|229490898|ref|ZP_04384733.1| NADH-quinone oxidoreductase subunit b [Rhodococcus erythropolis SK121] gi|259514682|sp|C0ZYJ9|NUOB_RHOE4 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|226185330|dbj|BAH33434.1| NADH-quinone oxidoreductase chain B [Rhodococcus erythropolis PR4] gi|229322288|gb|EEN88074.1| NADH-quinone oxidoreductase subunit b [Rhodococcus erythropolis SK121] Length = 184 Score = 168 bits (425), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 82/151 (54%), Positives = 111/151 (73%), Gaps = 2/151 (1%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APRAS 89 E GFL+T+V+ L +AR GSL TFGLACCA+EMM + R+DL RFG A RAS Sbjct: 4 EEKLPSGFLLTTVEGLAGYARKGSLWPATFGLACCAIEMMATTSGRFDLARFGMEAFRAS 63 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQ+D++IVAG ++ KM LR+VYDQM EP++V++MG CA+ GG ++ +Y+VV+G D I Sbjct: 64 PRQADLLIVAGRVSQKMGPVLRQVYDQMAEPKWVLAMGVCASSGGMFN-NYAVVQGVDHI 122 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 VPVDIY+PGCPP E L+ I+ L +KI+ + Sbjct: 123 VPVDIYLPGCPPRPEMLLNAIIELHRKIQEM 153 >gi|291451958|ref|ZP_06591348.1| NADH dehydrogenase subunit NuoB2 [Streptomyces albus J1074] gi|291354907|gb|EFE81809.1| NADH dehydrogenase subunit NuoB2 [Streptomyces albus J1074] Length = 214 Score = 168 bits (425), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 78/135 (57%), Positives = 103/135 (76%), Gaps = 1/135 (0%) Query: 46 LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS-PRQSDVMIVAGTLTN 104 ++ W R SL FGLACCA+E + ASM R+D R G P A PRQ+D+M+V+GT+T+ Sbjct: 39 VLNWGRRYSLWVFNFGLACCAIEFIAASMARHDFMRLGVIPFAPGPRQADLMVVSGTVTD 98 Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164 KMA A++R+Y+QMPEP+YVIS G+C+N GG Y SYSV +G D+I+PVD+YVPGCPP E Sbjct: 99 KMAPAVKRLYEQMPEPKYVISFGACSNCGGPYWDSYSVTKGVDQIIPVDVYVPGCPPRPE 158 Query: 165 ALIYGILLLQKKIRR 179 AL+ GI+ LQ+KI R Sbjct: 159 ALLQGIIKLQEKIAR 173 >gi|295086644|emb|CBK68167.1| NADH dehydrogenase subunit B [Bacteroides xylanisolvens XB1A] Length = 195 Score = 168 bits (425), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 71/137 (51%), Positives = 100/137 (72%), Gaps = 1/137 (0%) Query: 43 VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APRASPRQSDVMIVAGT 101 +D + W R+ SL +TF +CC +E M RYD+ RFGF RASPRQ+D+++V GT Sbjct: 42 LDDFINWGRSNSLWPLTFATSCCGIEFMALGAARYDMARFGFEVARASPRQADMIMVCGT 101 Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP 161 +TNKMA L+R+YDQMP+P+YV+++G CA GG + SY VV G D+I+PVD+Y+PGCPP Sbjct: 102 ITNKMAPVLKRLYDQMPDPKYVVAVGGCAVSGGPFKKSYHVVNGVDKILPVDVYIPGCPP 161 Query: 162 TAEALIYGILLLQKKIR 178 EA YG++ LQ+K++ Sbjct: 162 RPEAFYYGMMQLQRKVK 178 >gi|237719852|ref|ZP_04550333.1| NADH dehydrogenase subunit I B [Bacteroides sp. 2_2_4] gi|262408339|ref|ZP_06084886.1| NADH-quinone oxidoreductase subunit C/D [Bacteroides sp. 2_1_22] gi|293373614|ref|ZP_06619962.1| NADH-quinone oxidoreductase, B subunit [Bacteroides ovatus SD CMC 3f] gi|294809425|ref|ZP_06768130.1| NADH-quinone oxidoreductase, B subunit [Bacteroides xylanisolvens SD CC 1b] gi|298480351|ref|ZP_06998549.1| proton-translocating NADH-quinone oxidoreductase, B subunit [Bacteroides sp. D22] gi|229451121|gb|EEO56912.1| NADH dehydrogenase subunit I B [Bacteroides sp. 2_2_4] gi|262353891|gb|EEZ02984.1| NADH-quinone oxidoreductase subunit C/D [Bacteroides sp. 2_1_22] gi|292631439|gb|EFF50069.1| NADH-quinone oxidoreductase, B subunit [Bacteroides ovatus SD CMC 3f] gi|294443361|gb|EFG12123.1| NADH-quinone oxidoreductase, B subunit [Bacteroides xylanisolvens SD CC 1b] gi|298273632|gb|EFI15195.1| proton-translocating NADH-quinone oxidoreductase, B subunit [Bacteroides sp. D22] Length = 200 Score = 168 bits (425), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 71/137 (51%), Positives = 100/137 (72%), Gaps = 1/137 (0%) Query: 43 VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APRASPRQSDVMIVAGT 101 +D + W R+ SL +TF +CC +E M RYD+ RFGF RASPRQ+D+++V GT Sbjct: 42 LDDFINWGRSNSLWPLTFATSCCGIEFMALGAARYDMARFGFEVARASPRQADMIMVCGT 101 Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP 161 +TNKMA L+R+YDQMP+P+YV+++G CA GG + SY VV G D+I+PVD+Y+PGCPP Sbjct: 102 ITNKMAPVLKRLYDQMPDPKYVVAVGGCAVSGGPFKKSYHVVNGVDKILPVDVYIPGCPP 161 Query: 162 TAEALIYGILLLQKKIR 178 EA YG++ LQ+K++ Sbjct: 162 RPEAFYYGMMQLQRKVK 178 >gi|300727166|ref|ZP_07060584.1| NADH dehydrogenase I, b subunit [Prevotella bryantii B14] gi|299775552|gb|EFI72144.1| NADH dehydrogenase I, b subunit [Prevotella bryantii B14] Length = 254 Score = 168 bits (425), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 74/162 (45%), Positives = 112/162 (69%), Gaps = 6/162 (3%) Query: 18 SLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRY 77 SLEK+ A+ + + + ++ S+D + W R+ S +TFG +CC +E M RY Sbjct: 22 SLEKIAAELNEGGANV-----VLGSLDAAINWGRSNSPWSLTFGTSCCGIEFMAIGCARY 76 Query: 78 DLERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY 136 D+ RFG+ R SPRQ+D+++ AGT+TNKMA +R+YD+M EP+YV+++G C GG + Sbjct: 77 DMSRFGWEVTRNSPRQADLIMCAGTITNKMAPVFKRLYDEMAEPKYVVAVGGCTISGGPF 136 Query: 137 HYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 SY+VVRG + +VPVD+Y+PGCPP EA+IYG++ LQ+KI+ Sbjct: 137 KKSYNVVRGINELVPVDVYIPGCPPRPEAIIYGMMQLQRKIK 178 >gi|134103329|ref|YP_001108990.1| NADH dehydrogenase subunit B [Saccharopolyspora erythraea NRRL 2338] gi|291004452|ref|ZP_06562425.1| NADH dehydrogenase subunit B [Saccharopolyspora erythraea NRRL 2338] gi|238065203|sp|A4FPU0|NUOB_SACEN RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|133915952|emb|CAM06065.1| NADH dehydrogenase I chain B [Saccharopolyspora erythraea NRRL 2338] Length = 220 Score = 168 bits (425), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 80/148 (54%), Positives = 105/148 (70%), Gaps = 2/148 (1%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RAS 89 E G L+ +V++LV W R S+ FGLACCA+EMM RYD+ RFG A+ Sbjct: 4 EEKLPNGILLANVEKLVNWTRKTSVWPAAFGLACCAIEMMTVGGSRYDIARFGMERFSAT 63 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQ+D+M+VAG +TNKMA LR+VYDQMPEPR+VI+MG CA+ GG ++ +Y+VV+G D + Sbjct: 64 PRQADLMVVAGRVTNKMAPVLRQVYDQMPEPRWVIAMGVCASSGGMFN-NYAVVQGVDHV 122 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKI 177 VPVD+Y+PGCPP E L+ IL L KI Sbjct: 123 VPVDMYLPGCPPRPEMLLDAILKLHAKI 150 >gi|271962156|ref|YP_003336352.1| NADH dehydrogenase (quinone) [Streptosporangium roseum DSM 43021] gi|270505331|gb|ACZ83609.1| NADH dehydrogenase (quinone) [Streptosporangium roseum DSM 43021] Length = 183 Score = 168 bits (425), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 77/143 (53%), Positives = 107/143 (74%), Gaps = 2/143 (1%) Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQSDV 95 GF++++V+Q+ WAR S+ TFGLACCA+E+M P++DL RFG ASPRQ+D+ Sbjct: 10 GFMLSTVEQVAGWARKNSVWPATFGLACCAIELMSTGGPKHDLARFGMERASASPRQADL 69 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155 MIVAG L+ KMA LR++YDQM EP++VI+MG CA+ GG ++ +Y++V+G D +VPVDIY Sbjct: 70 MIVAGRLSQKMAPVLRQIYDQMAEPKWVIAMGVCASSGGMFN-NYAIVQGVDHVVPVDIY 128 Query: 156 VPGCPPTAEALIYGILLLQKKIR 178 +PGCPP E LI I+ L KI+ Sbjct: 129 LPGCPPRPEMLIDAIVKLHDKIQ 151 >gi|189468077|ref|ZP_03016862.1| hypothetical protein BACINT_04471 [Bacteroides intestinalis DSM 17393] gi|189436341|gb|EDV05326.1| hypothetical protein BACINT_04471 [Bacteroides intestinalis DSM 17393] Length = 199 Score = 168 bits (425), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 71/137 (51%), Positives = 100/137 (72%), Gaps = 1/137 (0%) Query: 43 VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APRASPRQSDVMIVAGT 101 +D + W R+ SL +TF +CC +E M RYD+ RFGF RASPRQ+D+++V GT Sbjct: 42 LDDFINWGRSNSLWPLTFATSCCGIEFMALGAARYDMARFGFEVARASPRQADMIMVCGT 101 Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP 161 +TNKMA L+R+YDQMP+P+YV+++G CA GG + SY VV G D+I+PVD+Y+PGCPP Sbjct: 102 ITNKMAPVLKRLYDQMPDPKYVVAVGGCAVSGGPFKKSYHVVNGVDKILPVDVYIPGCPP 161 Query: 162 TAEALIYGILLLQKKIR 178 EA YG++ LQ+K++ Sbjct: 162 RPEAFYYGMMQLQRKVK 178 >gi|330470216|ref|YP_004407959.1| NADH-quinone oxidoreductase subunit B [Verrucosispora maris AB-18-032] gi|328813187|gb|AEB47359.1| NADH-quinone oxidoreductase, B subunit [Verrucosispora maris AB-18-032] Length = 197 Score = 168 bits (425), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 77/133 (57%), Positives = 102/133 (76%), Gaps = 1/133 (0%) Query: 46 LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA-SPRQSDVMIVAGTLTN 104 ++ W R SL FGLACCA+E + SM R+D R G P A PRQ+D+M+V+GT+T+ Sbjct: 14 VLNWGRRYSLWVFNFGLACCAIEFIATSMSRHDFMRLGVIPFAHGPRQADLMVVSGTVTD 73 Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164 KMA A++R+YDQMPEP+YVIS G+C+N GG Y SYSV +G D+++PVD+YVPGCPP E Sbjct: 74 KMAPAIKRLYDQMPEPKYVISFGACSNCGGPYWDSYSVTKGVDQLIPVDVYVPGCPPRPE 133 Query: 165 ALIYGILLLQKKI 177 AL++GIL LQ+KI Sbjct: 134 ALLHGILRLQEKI 146 >gi|297159540|gb|ADI09252.1| NADH dehydrogenase subunit NuoB2 [Streptomyces bingchenggensis BCW-1] Length = 214 Score = 167 bits (424), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 78/135 (57%), Positives = 103/135 (76%), Gaps = 1/135 (0%) Query: 46 LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS-PRQSDVMIVAGTLTN 104 ++ W R SL FGLACCA+E + ASM R+D R G P A PRQ+D+M+V+GT+T+ Sbjct: 38 VLNWGRRYSLWVFNFGLACCAIEFIAASMARHDFIRLGVIPFAPGPRQADLMVVSGTVTD 97 Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164 KMA A++R+Y+QMPEP+YVIS G+C+N GG Y SY+V +G D+I+PVD+YVPGCPP E Sbjct: 98 KMAPAVKRLYEQMPEPKYVISFGACSNCGGPYWDSYAVTKGVDQIIPVDVYVPGCPPRPE 157 Query: 165 ALIYGILLLQKKIRR 179 AL+ GIL LQ+KI R Sbjct: 158 ALLQGILKLQEKIAR 172 >gi|295837078|ref|ZP_06824011.1| proton-translocating NADH-quinone oxidoreductase, B subunit [Streptomyces sp. SPB74] gi|197697185|gb|EDY44118.1| proton-translocating NADH-quinone oxidoreductase, B subunit [Streptomyces sp. SPB74] Length = 204 Score = 167 bits (424), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 78/135 (57%), Positives = 103/135 (76%), Gaps = 1/135 (0%) Query: 46 LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS-PRQSDVMIVAGTLTN 104 ++ W R SL FGLACCA+E + ASM R+D R G P A PRQ+D+M+V+GT+T+ Sbjct: 42 VLNWGRRYSLWVFNFGLACCAIEFIAASMSRHDFIRLGVIPFAPGPRQADLMVVSGTVTD 101 Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164 KMA A++R+Y+QMPEP+YVIS G+C+N GG Y SYSV +G D+I+PVD+YVPGCPP E Sbjct: 102 KMAPAVKRLYEQMPEPKYVISFGACSNCGGPYWDSYSVTKGVDQIIPVDVYVPGCPPRPE 161 Query: 165 ALIYGILLLQKKIRR 179 AL+ GIL LQ+KI + Sbjct: 162 ALLQGILKLQEKIAK 176 >gi|78043958|ref|YP_360256.1| NADH dehydrogenase subunit B [Carboxydothermus hydrogenoformans Z-2901] gi|123576172|sp|Q3AC78|NUOB_CARHZ RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|77996073|gb|ABB14972.1| proton-translocating NADH-quinone oxidoreductase, B subunit [Carboxydothermus hydrogenoformans Z-2901] Length = 166 Score = 167 bits (424), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 80/156 (51%), Positives = 108/156 (69%), Gaps = 1/156 (0%) Query: 30 SSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RA 88 ++ K +T++D + WAR SL +TFGLACCA+E+M A P+YD RFG+ R Sbjct: 10 EEKLIGKNVFLTTLDAVFNWARGNSLWPLTFGLACCAIEVMAAGGPKYDFSRFGYEVWRP 69 Query: 89 SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 148 SPR +D+MIVAGT+T KM + R+Y+QM EP+YVI+MGSCA GG + SY VV G + Sbjct: 70 SPRHADLMIVAGTITKKMQPLVLRLYEQMAEPKYVIAMGSCAISGGPFVDSYHVVPGANT 129 Query: 149 IVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 +PVD+Y+PGCPP EAL+YG L L++KI+ VK Sbjct: 130 FLPVDVYIPGCPPRPEALLYGWLELKRKIQNPRVVK 165 >gi|288928299|ref|ZP_06422146.1| NADH dehydrogenase I, B/C/D subunit [Prevotella sp. oral taxon 317 str. F0108] gi|288331133|gb|EFC69717.1| NADH dehydrogenase I, B/C/D subunit [Prevotella sp. oral taxon 317 str. F0108] Length = 207 Score = 167 bits (424), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 75/161 (46%), Positives = 111/161 (68%), Gaps = 3/161 (1%) Query: 21 KVDADFSRISSEITHKGF--LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78 K + +I +E+ G +V S+DQ + W R+ SL +TF +CC +E M RYD Sbjct: 17 KDNDTLEQIMNELHEGGVNVVVGSLDQAINWGRSNSLWSLTFATSCCGIEFMSVGCARYD 76 Query: 79 LERFGF-APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137 RFGF R SPRQ+D+++ AGT+TNKMA ++R+YD+M +P+YVI++G CA GG + Sbjct: 77 FARFGFEVTRNSPRQADLIMCAGTITNKMAPVMKRLYDEMADPKYVIAVGGCAISGGPFK 136 Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 SY VVRG + IVPVD+++PGCPP EA++YG++ LQ+K++ Sbjct: 137 SSYHVVRGIEEIVPVDVFIPGCPPRPEAILYGMMQLQRKVK 177 >gi|260912210|ref|ZP_05918762.1| NADH dehydrogenase I [Prevotella sp. oral taxon 472 str. F0295] gi|260633644|gb|EEX51782.1| NADH dehydrogenase I [Prevotella sp. oral taxon 472 str. F0295] Length = 207 Score = 167 bits (424), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 75/161 (46%), Positives = 111/161 (68%), Gaps = 3/161 (1%) Query: 21 KVDADFSRISSEITHKGF--LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78 K + +I +E+ G +V S+DQ + W R+ SL +TF +CC +E M RYD Sbjct: 17 KDNDTLEQIMNELHEGGVNVVVGSLDQAINWGRSNSLWSLTFATSCCGIEFMSVGCARYD 76 Query: 79 LERFGF-APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137 RFGF R SPRQ+D+++ AGT+TNKMA ++R+YD+M +P+YVI++G CA GG + Sbjct: 77 FARFGFEVTRNSPRQADLIMCAGTITNKMAPVMKRLYDEMADPKYVIAVGGCAISGGPFK 136 Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 SY VVRG + IVPVD+++PGCPP EA++YG++ LQ+K++ Sbjct: 137 SSYHVVRGIEEIVPVDVFIPGCPPRPEAILYGMMQLQRKVK 177 >gi|226227067|ref|YP_002761173.1| NADH-quinone oxidoreductase chain B [Gemmatimonas aurantiaca T-27] gi|226090258|dbj|BAH38703.1| NADH-quinone oxidoreductase chain B [Gemmatimonas aurantiaca T-27] Length = 212 Score = 167 bits (424), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 81/167 (48%), Positives = 114/167 (68%), Gaps = 10/167 (5%) Query: 12 SGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQ 71 G+ + ++ VDA H G++ T +D LV W R GSL M FG ACCA+E M Sbjct: 8 EGRGASAITHVDAG--------GHDGWITTRLDFLVNWGRAGSLWPMPFGTACCAIEFMA 59 Query: 72 ASMPRYDLERFGFAPRA-SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCA 130 + R+DL RFG + SPRQ+DV++ AG + K+A LRR+Y QMP+P++VISMG+CA Sbjct: 60 TAASRFDLSRFGMERLSYSPRQADVLLCAGRVPLKLAPVLRRIYQQMPQPKWVISMGACA 119 Query: 131 NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 + GG + +Y+VV+G D I+PVD+YVPGCPP EAL++ I++LQKK+ Sbjct: 120 STGGMFD-NYAVVQGIDTIIPVDVYVPGCPPRPEALMHAIIMLQKKV 165 >gi|312139310|ref|YP_004006646.1| NADH dehydrogenase (quinone) chain b nuob [Rhodococcus equi 103S] gi|325673384|ref|ZP_08153075.1| NADH-quinone oxidoreductase subunit B [Rhodococcus equi ATCC 33707] gi|311888649|emb|CBH47961.1| NADH dehydrogenase (quinone) chain B NuoB [Rhodococcus equi 103S] gi|325555405|gb|EGD25076.1| NADH-quinone oxidoreductase subunit B [Rhodococcus equi ATCC 33707] Length = 190 Score = 167 bits (424), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 82/149 (55%), Positives = 110/149 (73%), Gaps = 2/149 (1%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APRAS 89 E GFL+++V+ + +AR GSL TFGLACCA+EMM + RYDL RFG A RAS Sbjct: 4 EEKVPGGFLLSTVETVAGYARKGSLWPATFGLACCAIEMMATTSGRYDLARFGMEAFRAS 63 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQ+D+MIVAG ++ KMA LR+VYDQM EP++V++MG CA+ GG ++ +Y++V+G D + Sbjct: 64 PRQADLMIVAGRVSQKMAPVLRQVYDQMVEPKWVLAMGVCASSGGMFN-NYAIVQGVDHV 122 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIR 178 VPVDIY+PGCPP E L+ IL L KI+ Sbjct: 123 VPVDIYLPGCPPRPEMLLDAILALHAKIQ 151 >gi|253698814|ref|YP_003020003.1| trifunctional NADH dehydrogenase I subunit B/C/D [Geobacter sp. M21] gi|251773664|gb|ACT16245.1| NADH dehydrogenase I, D subunit [Geobacter sp. M21] Length = 794 Score = 167 bits (424), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 78/144 (54%), Positives = 106/144 (73%), Gaps = 2/144 (1%) Query: 36 KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSD 94 + L S+D ++ W R SL M FGL+CC VEMM + RYD+ RFG R +PR+SD Sbjct: 11 ENVLFASLDDMINWGRANSLWPMFFGLSCCFVEMMTSFTSRYDVSRFGAEVLRGTPRESD 70 Query: 95 VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154 +M++AGT+ KMA ++ R+YDQM EP++VISMGSCAN GG Y YSVV+G D+I+PVD+ Sbjct: 71 LMVIAGTVFKKMAPSILRLYDQMAEPKWVISMGSCANSGGMYDV-YSVVQGVDQILPVDL 129 Query: 155 YVPGCPPTAEALIYGILLLQKKIR 178 Y+PGCPP E+ + G++LLQ+KIR Sbjct: 130 YIPGCPPRPESFLEGLMLLQQKIR 153 >gi|318056637|ref|ZP_07975360.1| NADH dehydrogenase I chain B [Streptomyces sp. SA3_actG] gi|318080916|ref|ZP_07988248.1| NADH dehydrogenase I chain B [Streptomyces sp. SA3_actF] Length = 204 Score = 167 bits (424), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 78/133 (58%), Positives = 102/133 (76%), Gaps = 1/133 (0%) Query: 46 LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS-PRQSDVMIVAGTLTN 104 ++ W R SL FGLACCA+E + ASM R+D R G P A PRQ+D+M+V+GT+T+ Sbjct: 42 VLNWGRRYSLWVFNFGLACCAIEFIAASMSRHDFIRLGVIPFAPGPRQADLMVVSGTVTD 101 Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164 KMA A++R+Y+QMPEP+YVIS G+C+N GG Y SYSV +G D+I+PVD+YVPGCPP E Sbjct: 102 KMAPAVKRLYEQMPEPKYVISFGACSNCGGPYWDSYSVTKGVDQIIPVDVYVPGCPPRPE 161 Query: 165 ALIYGILLLQKKI 177 AL+ GIL LQ+KI Sbjct: 162 ALLQGILKLQEKI 174 >gi|269955278|ref|YP_003325067.1| NADH-quinone oxidoreductase subunit B [Xylanimonas cellulosilytica DSM 15894] gi|269303959|gb|ACZ29509.1| NADH-quinone oxidoreductase, B subunit [Xylanimonas cellulosilytica DSM 15894] Length = 183 Score = 167 bits (423), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 81/147 (55%), Positives = 108/147 (73%), Gaps = 2/147 (1%) Query: 32 EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASP 90 E GFL+T+++ L + R SL +TFGLACCA+EMM A R+DL RFG RASP Sbjct: 4 EEAPSGFLLTTIEDLAGYLRKASLWPVTFGLACCAIEMMAAGASRFDLSRFGMEVFRASP 63 Query: 91 RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150 RQ+D+MIVAG ++ KMA +R+VYDQM EP++V+SMG CA+ GG ++ +Y++V+G D IV Sbjct: 64 RQADLMIVAGRVSQKMAPVVRQVYDQMSEPKWVLSMGVCASSGGMFN-NYAIVQGVDHIV 122 Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKI 177 PVDIY+PGCPP E LI IL L ++I Sbjct: 123 PVDIYLPGCPPRPEMLINAILALHQQI 149 >gi|78221378|ref|YP_383125.1| trifunctional NADH dehydrogenase I subunit B/C/D [Geobacter metallireducens GS-15] gi|123572941|sp|Q39ZC4|NUBCD_GEOMG RecName: Full=NADH-quinone oxidoreductase subunit B/C/D; AltName: Full=NADH dehydrogenase I subunit B/C/D; AltName: Full=NDH-1 subunit B/C/D gi|78192633|gb|ABB30400.1| NADH dehydrogenase subunit D / NADH dehydrogenase subunit C / NADH dehydrogenase subunit B [Geobacter metallireducens GS-15] Length = 791 Score = 167 bits (423), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 77/145 (53%), Positives = 108/145 (74%), Gaps = 2/145 (1%) Query: 36 KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSD 94 + ++T +D L+ W R SL M FGL+CC VEMM + RYD+ RFG R +PR++D Sbjct: 8 QNIVLTRLDDLINWGRANSLWPMFFGLSCCFVEMMTSFTSRYDISRFGAEVLRGTPREAD 67 Query: 95 VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154 +M++AGT+ KMA ++ R+Y+QM EP++VISMGSCAN GG Y YSVV+G ++I+PVD+ Sbjct: 68 LMVIAGTVFKKMAPSILRLYEQMAEPKWVISMGSCANSGGMYDV-YSVVQGVNQIIPVDV 126 Query: 155 YVPGCPPTAEALIYGILLLQKKIRR 179 +VPGCPP EA + G++LLQ+KIRR Sbjct: 127 HVPGCPPRPEAFLQGVMLLQEKIRR 151 >gi|294630833|ref|ZP_06709393.1| NADH dehydrogenase I, 20 kDa subunit [Streptomyces sp. e14] gi|292834166|gb|EFF92515.1| NADH dehydrogenase I, 20 kDa subunit [Streptomyces sp. e14] Length = 236 Score = 167 bits (423), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 78/133 (58%), Positives = 102/133 (76%), Gaps = 1/133 (0%) Query: 46 LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS-PRQSDVMIVAGTLTN 104 ++ W R SL FGLACCA+E + ASM R+D R G P A PRQ+D+M+V+GT+T+ Sbjct: 51 VLNWGRRYSLWVFNFGLACCAIEFIAASMARHDFIRLGVIPFAPGPRQADLMVVSGTVTD 110 Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164 KMA A++R+Y+QMPEP+YVIS G+C+N GG Y SYSV +G D+I+PVD+YVPGCPP E Sbjct: 111 KMAPAVKRLYEQMPEPKYVISFGACSNCGGPYWDSYSVTKGVDQIIPVDVYVPGCPPRPE 170 Query: 165 ALIYGILLLQKKI 177 AL+ GIL LQ+KI Sbjct: 171 ALLQGILKLQEKI 183 >gi|156741308|ref|YP_001431437.1| NADH dehydrogenase subunit B [Roseiflexus castenholzii DSM 13941] gi|238065017|sp|A7NIW1|NUOB1_ROSCS RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName: Full=NADH dehydrogenase I subunit B 1; AltName: Full=NDH-1 subunit B 1 gi|156232636|gb|ABU57419.1| NADH-quinone oxidoreductase, B subunit [Roseiflexus castenholzii DSM 13941] Length = 167 Score = 167 bits (423), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 79/153 (51%), Positives = 111/153 (72%), Gaps = 2/153 (1%) Query: 29 ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PR 87 I + G + S++Q+V W+R+ ++ + FGLACCA+EMM A YDL RFG R Sbjct: 3 IEQKAGDMGIVTASLEQVVNWSRSNAMWPLLFGLACCAIEMMGAQGANYDLSRFGMEINR 62 Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCD 147 ASPRQ+D+MIVAG ++ KMA +RR+YDQM +P++VI+MG CA GG ++ +Y++V+G D Sbjct: 63 ASPRQADLMIVAGRVSRKMAPVVRRLYDQMADPKWVIAMGDCAACGGVFN-NYAIVQGVD 121 Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 IVPVD+YV GCPP EALI GI+ L +K+RR+ Sbjct: 122 EIVPVDVYVAGCPPRPEALIDGIIHLHEKVRRM 154 >gi|148657777|ref|YP_001277982.1| NADH dehydrogenase subunit B [Roseiflexus sp. RS-1] gi|238065039|sp|A5UZH9|NUOB2_ROSS1 RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName: Full=NADH dehydrogenase I subunit B 2; AltName: Full=NDH-1 subunit B 2 gi|148569887|gb|ABQ92032.1| NADH-quinone oxidoreductase, B subunit [Roseiflexus sp. RS-1] Length = 167 Score = 167 bits (423), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 79/153 (51%), Positives = 111/153 (72%), Gaps = 2/153 (1%) Query: 29 ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PR 87 I + G + S++QLV W+R+ ++ + FGLACCA+EMM A YDL RFG R Sbjct: 3 IEQKAGDMGIVTASLEQLVNWSRSSAMWPLLFGLACCAIEMMGAQGANYDLSRFGMEINR 62 Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCD 147 ASPRQ+D+MIVAG ++ KMA +RR+YDQM +P++VI+MG CA GG ++ +Y++V+G D Sbjct: 63 ASPRQADLMIVAGRVSRKMAPVVRRLYDQMADPKWVIAMGDCAACGGVFN-NYAIVQGVD 121 Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 IVPVD+YV GCPP EALI GI+ L +K++R+ Sbjct: 122 EIVPVDVYVAGCPPRPEALIDGIIHLHEKVKRM 154 >gi|302543406|ref|ZP_07295748.1| NADH dehydrogenase I, 20 kDa subunit [Streptomyces hygroscopicus ATCC 53653] gi|302461024|gb|EFL24117.1| NADH dehydrogenase I, 20 kDa subunit [Streptomyces himastatinicus ATCC 53653] Length = 241 Score = 167 bits (423), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 78/135 (57%), Positives = 103/135 (76%), Gaps = 1/135 (0%) Query: 46 LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS-PRQSDVMIVAGTLTN 104 ++ W R SL FGLACCA+E + ASM R+D R G P A PRQ+D+M+V+GT+T+ Sbjct: 73 VLNWGRRYSLWVFNFGLACCAIEFIAASMARHDFIRLGVIPFAPGPRQADLMVVSGTVTD 132 Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164 KMA A++R+Y+QMPEP+YVIS G+C+N GG Y SY+V +G D+I+PVD+YVPGCPP E Sbjct: 133 KMAPAVKRLYEQMPEPKYVISFGACSNCGGPYWDSYAVTKGVDQIIPVDVYVPGCPPRPE 192 Query: 165 ALIYGILLLQKKIRR 179 AL+ GIL LQ+KI R Sbjct: 193 ALLQGILKLQEKIAR 207 >gi|302870016|ref|YP_003838653.1| NADH-quinone oxidoreductase subunit B [Micromonospora aurantiaca ATCC 27029] gi|315503712|ref|YP_004082599.1| NADH-quinone oxidoreductase, b subunit [Micromonospora sp. L5] gi|302572875|gb|ADL49077.1| NADH-quinone oxidoreductase, B subunit [Micromonospora aurantiaca ATCC 27029] gi|315410331|gb|ADU08448.1| NADH-quinone oxidoreductase, B subunit [Micromonospora sp. L5] Length = 186 Score = 167 bits (423), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 77/133 (57%), Positives = 102/133 (76%), Gaps = 1/133 (0%) Query: 46 LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA-SPRQSDVMIVAGTLTN 104 ++ W R SL FGLACCA+E + SM R+D R G P A PRQ+D+M+V+GT+T+ Sbjct: 14 VLNWGRRYSLWVFNFGLACCAIEFIATSMGRHDFMRLGVIPFAHGPRQADLMVVSGTVTD 73 Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164 KMA A++R+YDQMPEP+YVIS G+C+N GG Y SYSV +G D+++PVD+YVPGCPP E Sbjct: 74 KMAPAVKRLYDQMPEPKYVISFGACSNCGGPYWDSYSVTKGVDQLIPVDVYVPGCPPRPE 133 Query: 165 ALIYGILLLQKKI 177 AL++GIL LQ+KI Sbjct: 134 ALLHGILRLQEKI 146 >gi|296268274|ref|YP_003650906.1| NADH-quinone oxidoreductase subunit B [Thermobispora bispora DSM 43833] gi|296091061|gb|ADG87013.1| NADH-quinone oxidoreductase, B subunit [Thermobispora bispora DSM 43833] Length = 183 Score = 167 bits (423), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 78/145 (53%), Positives = 108/145 (74%), Gaps = 2/145 (1%) Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQSDV 95 GFL+T+V++ V WAR S+ TFGLACCA+E+M P++DL RFG A+PRQ+D+ Sbjct: 10 GFLLTTVEKAVGWARKNSVWPATFGLACCAIELMATGGPKHDLARFGMERASATPRQADL 69 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155 MIVAG ++ KMA +RR+YDQM EP++VI+MG CA+ GG ++ +Y+VV+G D IVPVD+Y Sbjct: 70 MIVAGRVSQKMAPVVRRIYDQMAEPKWVIAMGVCASSGGMFN-NYAVVQGVDHIVPVDVY 128 Query: 156 VPGCPPTAEALIYGILLLQKKIRRV 180 +PGCPP E LI I+ L KI+ + Sbjct: 129 LPGCPPRPEMLIDAIVKLHDKIQNM 153 >gi|218528061|sp|Q67P21|NUOB1_SYMTH RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName: Full=NADH dehydrogenase I subunit B 1; AltName: Full=NDH-1 subunit B 1 Length = 166 Score = 167 bits (423), Expect = 7e-40, Method: Compositional matrix adjust. Identities = 76/147 (51%), Positives = 113/147 (76%), Gaps = 3/147 (2%) Query: 35 HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQ-ASMPRYDLERFGF-APRASPRQ 92 GF+ T+VD + WA++ S+ +TFGLACCA+EMM AS PRYD+ RFG A RASPRQ Sbjct: 10 QGGFVTTTVDSFLRWAQSNSIWPLTFGLACCAIEMMNLASGPRYDIARFGSEAFRASPRQ 69 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 +D++ ++G ++NKMA ++RVY QM EP++V++ G+CA+ GG + +Y++++G D ++PV Sbjct: 70 ADLIFISGRVSNKMAPVIKRVYSQMLEPKWVVAFGACASSGGIFD-NYAIMQGVDNLLPV 128 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179 DIYVPGCPPT EA+IY + L+ +IR+ Sbjct: 129 DIYVPGCPPTPEAVIYAVQKLRDRIRK 155 >gi|302521251|ref|ZP_07273593.1| NADH dehydrogenase subunit NuoB2 [Streptomyces sp. SPB78] gi|302430146|gb|EFL01962.1| NADH dehydrogenase subunit NuoB2 [Streptomyces sp. SPB78] Length = 243 Score = 167 bits (422), Expect = 7e-40, Method: Compositional matrix adjust. Identities = 78/133 (58%), Positives = 102/133 (76%), Gaps = 1/133 (0%) Query: 46 LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS-PRQSDVMIVAGTLTN 104 ++ W R SL FGLACCA+E + ASM R+D R G P A PRQ+D+M+V+GT+T+ Sbjct: 81 VLNWGRRYSLWVFNFGLACCAIEFIAASMSRHDFIRLGVIPFAPGPRQADLMVVSGTVTD 140 Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164 KMA A++R+Y+QMPEP+YVIS G+C+N GG Y SYSV +G D+I+PVD+YVPGCPP E Sbjct: 141 KMAPAVKRLYEQMPEPKYVISFGACSNCGGPYWDSYSVTKGVDQIIPVDVYVPGCPPRPE 200 Query: 165 ALIYGILLLQKKI 177 AL+ GIL LQ+KI Sbjct: 201 ALLQGILKLQEKI 213 >gi|111220500|ref|YP_711294.1| NADH dehydrogenase subunit B [Frankia alni ACN14a] gi|111148032|emb|CAJ59698.1| NADH dehydrogenase subunit [Frankia alni ACN14a] Length = 271 Score = 167 bits (422), Expect = 7e-40, Method: Compositional matrix adjust. Identities = 79/141 (56%), Positives = 105/141 (74%), Gaps = 2/141 (1%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVM 96 L+ SV++L W+R SL TFGLACCA+EMM RYDL RFG RASPRQ+D+M Sbjct: 1 MLLASVEKLANWSRRSSLWPATFGLACCAIEMMSTGAGRYDLSRFGMEVFRASPRQADLM 60 Query: 97 IVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV 156 IVAG ++ KMA LR++YDQMPEP++V+SMG CA+ GG ++ +Y++V+G D IVPVD+Y+ Sbjct: 61 IVAGRVSQKMAPVLRQIYDQMPEPKWVLSMGVCASSGGMFN-NYAIVQGVDHIVPVDMYL 119 Query: 157 PGCPPTAEALIYGILLLQKKI 177 PGCPP E L+ I+ L +KI Sbjct: 120 PGCPPRPEMLMDAIIKLHEKI 140 >gi|222054362|ref|YP_002536724.1| NADH dehydrogenase I, D subunit [Geobacter sp. FRC-32] gi|221563651|gb|ACM19623.1| NADH dehydrogenase I, D subunit [Geobacter sp. FRC-32] Length = 792 Score = 167 bits (422), Expect = 7e-40, Method: Compositional matrix adjust. Identities = 79/141 (56%), Positives = 106/141 (75%), Gaps = 2/141 (1%) Query: 39 LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMI 97 L+T++D L+ W R SL M FGL+CC VEMM + RYD+ RFG R +PR++D+M+ Sbjct: 12 LLTNLDDLINWGRANSLWPMFFGLSCCFVEMMTSFTSRYDISRFGAEVLRGTPREADLMV 71 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 +AGT+ KMA ++ +Y+QM EPR+VISMGSCAN GG Y YSVV+G ++I+PVD+YVP Sbjct: 72 IAGTVFKKMAPSILTLYEQMAEPRWVISMGSCANSGGMYDV-YSVVQGVNQILPVDVYVP 130 Query: 158 GCPPTAEALIYGILLLQKKIR 178 GCPP EA + G+LLLQ+KIR Sbjct: 131 GCPPRPEAFMQGLLLLQEKIR 151 >gi|320529348|ref|ZP_08030436.1| NADH dehydrogenase subunit B [Selenomonas artemidis F0399] gi|320138314|gb|EFW30208.1| NADH dehydrogenase subunit B [Selenomonas artemidis F0399] Length = 178 Score = 167 bits (422), Expect = 8e-40, Method: Compositional matrix adjust. Identities = 80/152 (52%), Positives = 108/152 (71%), Gaps = 2/152 (1%) Query: 27 SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP 86 R+ + H F+V +DQL WA S+ ++ GLACCA+EMM + R+DL RFG+ Sbjct: 5 ERVPESLRHNVFVV-KIDQLFRWAHASSIWPLSSGLACCAIEMMSTATARFDLARFGYEV 63 Query: 87 -RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRG 145 R PRQ+D++IVAGTLT KMA + R+Y+QMPEP+YVI+MG+C GG + SYSVV G Sbjct: 64 FRPCPRQADLLIVAGTLTWKMAEPIVRLYEQMPEPKYVIAMGACTIAGGPFADSYSVVPG 123 Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 D I+PVD+Y+PGCPP EAL+ G+L L++KI Sbjct: 124 IDDILPVDVYIPGCPPRPEALMDGMLKLREKI 155 >gi|149034569|gb|EDL89306.1| NADH dehydrogenase (ubiquinone) Fe-S protein 7, isoform CRA_b [Rattus norvegicus] Length = 94 Score = 167 bits (422), Expect = 8e-40, Method: Compositional matrix adjust. Identities = 78/89 (87%), Positives = 84/89 (94%) Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155 MIVAGTLTNKMA ALR+VYDQMPEPRYV+SMGSCANGGGYYHYSYSVVRGCDRIVPVDIY Sbjct: 1 MIVAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 60 Query: 156 VPGCPPTAEALIYGILLLQKKIRRVGNVK 184 VPGCPPTAEAL+YGIL LQ+KI+R +K Sbjct: 61 VPGCPPTAEALLYGILQLQRKIKREQKLK 89 >gi|168705443|ref|ZP_02737720.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit [Gemmata obscuriglobus UQM 2246] Length = 203 Score = 166 bits (421), Expect = 9e-40, Method: Compositional matrix adjust. Identities = 84/148 (56%), Positives = 113/148 (76%), Gaps = 2/148 (1%) Query: 35 HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APRASPRQS 93 GF+ T+++ + WAR SL MTFGLACCA+EMM PRYD++RFG A RA+PRQ+ Sbjct: 9 RDGFVATNLEHAINWARESSLWPMTFGLACCAIEMMATGAPRYDIDRFGAGAFRATPRQA 68 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCA-NGGGYYHYSYSVVRGCDRIVPV 152 D+MIVAGT+ KMA +RR+Y+QMP+P++VI+MG+C GG YY Y Y+V +G D IVPV Sbjct: 69 DLMIVAGTVNLKMAERVRRLYNQMPDPKFVIAMGACTCGGGPYYKYGYNVAKGVDLIVPV 128 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRV 180 D+YVPGCPP EAL+ G++ +Q KIR++ Sbjct: 129 DVYVPGCPPRPEALLEGLMRVQDKIRKM 156 >gi|111074959|gb|ABH04821.1| NAD(P)H-quinone oxidoreductase 20 kDa subunit [Heliobacillus mobilis] Length = 175 Score = 166 bits (421), Expect = 9e-40, Method: Compositional matrix adjust. Identities = 76/149 (51%), Positives = 111/149 (74%), Gaps = 1/149 (0%) Query: 32 EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASP 90 E+ K ++TS++ + WAR S ++ GLACCA+EMM ++ PR+D+ RFG+ R S Sbjct: 17 ELVQKNIIMTSLESVFNWARGNSFWPLSSGLACCAIEMMASAGPRFDIARFGYEVFRPSV 76 Query: 91 RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150 RQ+D +I+AGT+T KMA AL R+Y+QMPEP+++++MGSCA GG + SY+VV G D+I+ Sbjct: 77 RQADCIIIAGTVTWKMAPALVRLYEQMPEPKWILAMGSCACTGGPFVDSYAVVPGVDKIL 136 Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRR 179 PVD+Y+PGCPP EALI G L L++K++ Sbjct: 137 PVDVYIPGCPPRPEALIDGFLKLKEKVQN 165 >gi|330997245|ref|ZP_08321098.1| NADH-quinone oxidoreductase, B subunit [Paraprevotella xylaniphila YIT 11841] gi|329571040|gb|EGG52747.1| NADH-quinone oxidoreductase, B subunit [Paraprevotella xylaniphila YIT 11841] Length = 204 Score = 166 bits (421), Expect = 9e-40, Method: Compositional matrix adjust. Identities = 72/143 (50%), Positives = 102/143 (71%), Gaps = 1/143 (0%) Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQSDV 95 G ++ ++D L+ W R+ SL +TFG +CCA+E M RYD+ RFGF R SPRQ+D+ Sbjct: 37 GIVLGTLDDLINWGRSNSLWSLTFGTSCCAIEFMALGAARYDMARFGFEVTRNSPRQADM 96 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155 ++V GT+T +MA L+R+YDQM EP+YV+++G C GG + SY VV G D I+PVD+Y Sbjct: 97 IMVLGTITYRMAPVLKRLYDQMAEPKYVVAVGGCTISGGPFRKSYHVVNGIDEIIPVDVY 156 Query: 156 VPGCPPTAEALIYGILLLQKKIR 178 +PGCPP EA YG++ LQ+KI+ Sbjct: 157 IPGCPPRPEAFFYGMMQLQRKIK 179 >gi|329938298|ref|ZP_08287749.1| NADH dehydrogenase subunit NuoB2 [Streptomyces griseoaurantiacus M045] gi|329302787|gb|EGG46677.1| NADH dehydrogenase subunit NuoB2 [Streptomyces griseoaurantiacus M045] Length = 308 Score = 166 bits (421), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 77/135 (57%), Positives = 103/135 (76%), Gaps = 1/135 (0%) Query: 46 LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA-SPRQSDVMIVAGTLTN 104 ++ W R SL FGLACCA+E + ASM R+D R G P A PRQ+D+M+V+GT+T+ Sbjct: 75 VLNWGRRYSLWVFNFGLACCAIEFIAASMSRHDFMRLGVIPFAPGPRQADLMVVSGTVTD 134 Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164 KMA A++R+Y+QMPEP+YVIS G+C+N GG Y SY+V +G D+I+PVD+YVPGCPP E Sbjct: 135 KMAPAVKRLYEQMPEPKYVISFGACSNCGGPYWDSYAVTKGVDQIIPVDVYVPGCPPRPE 194 Query: 165 ALIYGILLLQKKIRR 179 AL+ GI+ LQ+KI R Sbjct: 195 ALLQGIIKLQEKIAR 209 >gi|169629221|ref|YP_001702870.1| NADH dehydrogenase subunit B [Mycobacterium abscessus ATCC 19977] gi|238065175|sp|B1MPG5|NUOB_MYCA9 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|169241188|emb|CAM62216.1| NADH-quinone oxidoreductase, B subunit NuoB [Mycobacterium abscessus] Length = 184 Score = 166 bits (421), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 76/142 (53%), Positives = 108/142 (76%), Gaps = 2/142 (1%) Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95 GFL+++V+ L + R GSL TFGLACCA+EMM + PR+D+ RFG A+PRQ+D+ Sbjct: 10 GFLLSTVETLAGYVRKGSLWPATFGLACCAIEMMSTAGPRFDIARFGMERFSATPRQADL 69 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155 MIVAG ++ KMA LR++YDQM EP++V++MG CA+ GG ++ +Y++V+G D +VPVDIY Sbjct: 70 MIVAGRVSQKMAPVLRQIYDQMAEPKWVLAMGVCASSGGMFN-NYAIVQGVDHVVPVDIY 128 Query: 156 VPGCPPTAEALIYGILLLQKKI 177 +PGCPP E L++ IL L +KI Sbjct: 129 LPGCPPRPEMLLHAILKLHEKI 150 >gi|308275204|emb|CBX31801.1| NADH-quinone oxidoreductase subunit B 2 [uncultured Desulfobacterium sp.] Length = 183 Score = 166 bits (421), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 77/139 (55%), Positives = 102/139 (73%), Gaps = 2/139 (1%) Query: 43 VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL 102 V L+ AR SL +TFG+ACCA+EMM A M R+DL+RFG RASPRQSDVM+VAGT+ Sbjct: 27 VQNLLNLARVNSLWPITFGIACCAIEMMAAGMARFDLDRFGTIFRASPRQSDVMVVAGTI 86 Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS--YSVVRGCDRIVPVDIYVPGCP 160 + K+ +R +YDQMP P++V++MG+CA GG + Y Y++V G D+I+PVDIY+PGCP Sbjct: 87 SKKLVPTIRTLYDQMPGPKWVMAMGNCAISGGPFAYDGQYAIVNGTDKIIPVDIYIPGCP 146 Query: 161 PTAEALIYGILLLQKKIRR 179 P EA I G+L LQ I + Sbjct: 147 PRPEAFIQGLLKLQTLISK 165 >gi|313895909|ref|ZP_07829463.1| NADH-quinone oxidoreductase, B subunit [Selenomonas sp. oral taxon 137 str. F0430] gi|312975334|gb|EFR40795.1| NADH-quinone oxidoreductase, B subunit [Selenomonas sp. oral taxon 137 str. F0430] Length = 178 Score = 166 bits (421), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 80/152 (52%), Positives = 108/152 (71%), Gaps = 2/152 (1%) Query: 27 SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP 86 R+ + H F+V +DQL WA S+ ++ GLACCA+EMM + R+DL RFG+ Sbjct: 5 ERVPESLRHNVFVV-KIDQLFRWAHASSIWPLSSGLACCAIEMMSTATARFDLARFGYEV 63 Query: 87 -RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRG 145 R PRQ+D++IVAGTLT KMA + R+Y+QMPEP+YVI+MG+C GG + SYSVV G Sbjct: 64 FRPCPRQADLLIVAGTLTWKMAEPIVRLYEQMPEPKYVIAMGACTIAGGPFADSYSVVPG 123 Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 D I+PVD+Y+PGCPP EAL+ G+L L++KI Sbjct: 124 IDDILPVDVYIPGCPPRPEALMDGMLKLREKI 155 >gi|254674105|emb|CBA09889.1| NADH dehydrogenase I chain B [Neisseria meningitidis alpha275] Length = 111 Score = 166 bits (421), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 74/93 (79%), Positives = 86/93 (92%) Query: 91 RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150 RQ+D+MIVAGTLTNKMA ALRRVYDQ+ EPR+V+SMGSCANGGGYYHYSYSVVRG DR+V Sbjct: 15 RQADLMIVAGTLTNKMAPALRRVYDQLAEPRWVLSMGSCANGGGYYHYSYSVVRGADRVV 74 Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 PVD+YVPGCPPTAEALIYG++ LQ+KI+R + Sbjct: 75 PVDVYVPGCPPTAEALIYGLIQLQQKIKRTSTI 107 >gi|111022873|ref|YP_705845.1| NADH dehydrogenase subunit B [Rhodococcus jostii RHA1] gi|122955232|sp|Q0S449|NUOB_RHOSR RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|110822403|gb|ABG97687.1| probable NADH dehydrogenase subunit B [Rhodococcus jostii RHA1] Length = 184 Score = 166 bits (421), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 80/151 (52%), Positives = 112/151 (74%), Gaps = 2/151 (1%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APRAS 89 E GFL+T+V+ L + R GSL +FGLACCA+EMM + R+D+ RFG A RAS Sbjct: 4 EEKLPSGFLLTTVEGLAGYVRKGSLWPASFGLACCAIEMMATAGGRFDIARFGMEAFRAS 63 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQ+D+MIVAG ++ KMA LR++YDQM EP++V++MG CA+ GG ++ +Y++V+G D I Sbjct: 64 PRQADLMIVAGRVSQKMAPVLRQIYDQMVEPKWVLAMGVCASSGGMFN-NYAIVQGVDHI 122 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 VPVDIY+PGCPP E L+ IL L +KI+++ Sbjct: 123 VPVDIYLPGCPPRPEMLLNAILTLHEKIQQM 153 >gi|296130550|ref|YP_003637800.1| NADH-quinone oxidoreductase, B subunit [Cellulomonas flavigena DSM 20109] gi|296022365|gb|ADG75601.1| NADH-quinone oxidoreductase, B subunit [Cellulomonas flavigena DSM 20109] Length = 183 Score = 166 bits (420), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 81/148 (54%), Positives = 109/148 (73%), Gaps = 2/148 (1%) Query: 32 EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASP 90 E GFL+T+V+ LV + R SL +TFGLACCA+EMM A RYD+ R G RASP Sbjct: 4 EEAPSGFLLTTVEDLVGYFRKASLWPVTFGLACCAIEMMAAGTSRYDISRLGMEVFRASP 63 Query: 91 RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150 RQSD+MIVAG ++ KMA +R+VYDQM P++V+SMG CA+ GG ++ +Y++V+G D IV Sbjct: 64 RQSDLMIVAGRVSQKMAPIVRQVYDQMAGPKWVLSMGVCASSGGMFN-NYAIVQGVDHIV 122 Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIR 178 PVDIY+PGCPP E L++ IL L ++I+ Sbjct: 123 PVDIYLPGCPPRPEMLLHAILALHQQIQ 150 >gi|197116578|ref|YP_002137005.1| trifunctional NADH dehydrogenase subunit I B/C/D [Geobacter bemidjiensis Bem] gi|218528047|sp|B5E972|NUBCD_GEOBB RecName: Full=NADH-quinone oxidoreductase subunit B/C/D; AltName: Full=NADH dehydrogenase I subunit B/C/D; AltName: Full=NDH-1 subunit B/C/D gi|197085938|gb|ACH37209.1| NADH dehydrogenase I, B/C/D subunits [Geobacter bemidjiensis Bem] Length = 794 Score = 166 bits (420), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 77/144 (53%), Positives = 107/144 (74%), Gaps = 2/144 (1%) Query: 36 KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSD 94 + L+ S+D ++ W R SL M FGL+CC VEMM + RYD+ RFG R +PR+SD Sbjct: 11 ENVLLASLDDMINWGRANSLWPMFFGLSCCFVEMMTSFTSRYDVSRFGAEVLRGTPRESD 70 Query: 95 VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154 +M++AGT+ KMA ++ R+YDQM EP++VISMGSCAN GG Y YSVV+G ++I+PVD+ Sbjct: 71 LMVIAGTVFKKMAPSILRLYDQMAEPKWVISMGSCANSGGMYDV-YSVVQGVNQILPVDL 129 Query: 155 YVPGCPPTAEALIYGILLLQKKIR 178 Y+PGCPP E+ + G++LLQ+KIR Sbjct: 130 YIPGCPPRPESFLEGLMLLQQKIR 153 >gi|226365381|ref|YP_002783164.1| NADH dehydrogenase subunit B [Rhodococcus opacus B4] gi|254767797|sp|C1AYM4|NUOB_RHOOB RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|226243871|dbj|BAH54219.1| NADH-quinone oxidoreductase chain B [Rhodococcus opacus B4] Length = 184 Score = 166 bits (420), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 80/151 (52%), Positives = 112/151 (74%), Gaps = 2/151 (1%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APRAS 89 E GFL+T+V+ L + R GSL +FGLACCA+EMM + R+D+ RFG A RAS Sbjct: 4 EEKLPSGFLLTTVEGLAGYVRKGSLWPASFGLACCAIEMMATAGGRFDIARFGMEAFRAS 63 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQ+D+MIVAG ++ KMA LR++YDQM EP++V++MG CA+ GG ++ +Y++V+G D I Sbjct: 64 PRQADLMIVAGRVSQKMAPVLRQIYDQMVEPKWVLAMGVCASSGGMFN-NYAIVQGVDHI 122 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 VPVDIY+PGCPP E L+ IL L +KI+++ Sbjct: 123 VPVDIYLPGCPPRPEMLLNAILTLHEKIQQM 153 >gi|171910632|ref|ZP_02926102.1| NADH-quinone oxidoreductase, B subunit [Verrucomicrobium spinosum DSM 4136] Length = 177 Score = 166 bits (420), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 79/154 (51%), Positives = 110/154 (71%), Gaps = 7/154 (4%) Query: 27 SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP 86 S+I S + ++T +D + W R SL M GLACCA+E+M + RYD+ RFG Sbjct: 14 SKIESNV-----VITRLDAAINWMRKNSLWPMPMGLACCAIELMATASSRYDISRFGAEV 68 Query: 87 -RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRG 145 R SPRQSDVM+VAGT+T KMA A++R++DQMPEP++ I+MG+CA+ GG Y SY+V++G Sbjct: 69 FRFSPRQSDVMVVAGTVTYKMALAVKRIWDQMPEPKWCIAMGACASSGGMYR-SYAVLQG 127 Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179 DR++PVD+Y+ GCPP EAL+ G LQ+KI + Sbjct: 128 IDRLIPVDVYISGCPPRPEALLEGFFRLQQKIEK 161 >gi|218129269|ref|ZP_03458073.1| hypothetical protein BACEGG_00846 [Bacteroides eggerthii DSM 20697] gi|317475241|ref|ZP_07934508.1| NADH-quinone oxidoreductase [Bacteroides eggerthii 1_2_48FAA] gi|217988647|gb|EEC54967.1| hypothetical protein BACEGG_00846 [Bacteroides eggerthii DSM 20697] gi|316908694|gb|EFV30381.1| NADH-quinone oxidoreductase [Bacteroides eggerthii 1_2_48FAA] Length = 194 Score = 166 bits (420), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 72/137 (52%), Positives = 99/137 (72%), Gaps = 1/137 (0%) Query: 43 VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APRASPRQSDVMIVAGT 101 +D V W R+ SL +TF +CC +E M RYD+ RFGF RASPRQ+D+++V GT Sbjct: 42 LDDFVNWGRSNSLWPLTFATSCCGIEFMALGAARYDMARFGFEVARASPRQADMIMVCGT 101 Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP 161 +TNKMA L+R+YDQM +P+YVI++G CA GG + SY VV G D+I+PVD+Y+PGCPP Sbjct: 102 ITNKMAPVLKRLYDQMADPKYVIAVGGCAVSGGPFKKSYHVVNGVDKILPVDVYIPGCPP 161 Query: 162 TAEALIYGILLLQKKIR 178 EA YG++ LQ+K++ Sbjct: 162 RPEAFYYGMMQLQRKVK 178 >gi|296140852|ref|YP_003648095.1| NADH-quinone oxidoreductase subunit beta [Tsukamurella paurometabola DSM 20162] gi|296028986|gb|ADG79756.1| NADH-quinone oxidoreductase, B subunit [Tsukamurella paurometabola DSM 20162] Length = 184 Score = 166 bits (420), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 77/142 (54%), Positives = 109/142 (76%), Gaps = 2/142 (1%) Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APRASPRQSDV 95 GFL+++++ + +AR GSL TFGLACCA+EMM + PR+D+ RFG A RASPRQ+D+ Sbjct: 10 GFLLSTLETVAGYARKGSLWPATFGLACCAIEMMATTGPRFDIARFGMEAFRASPRQADL 69 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155 MIVAG ++ KMA LR+VYDQM EP++V++MG CA+ GG ++ +Y+VV+G D +VPVDIY Sbjct: 70 MIVAGRVSQKMAPVLRQVYDQMAEPKWVLAMGVCASSGGMFN-NYAVVQGVDHVVPVDIY 128 Query: 156 VPGCPPTAEALIYGILLLQKKI 177 +PGCPP E L+ ++ L K+ Sbjct: 129 LPGCPPRPEMLLNALIALHDKV 150 >gi|166363918|ref|YP_001656191.1| NADH dehydrogenase subunit B [Microcystis aeruginosa NIES-843] gi|218527913|sp|B0JSV5|NDHK_MICAN RecName: Full=NAD(P)H-quinone oxidoreductase subunit K; AltName: Full=NAD(P)H dehydrogenase I subunit K; AltName: Full=NDH-1 subunit K; Short=NDH-K gi|166086291|dbj|BAG00999.1| NADH dehydrogenase subunit [Microcystis aeruginosa NIES-843] Length = 247 Score = 166 bits (420), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 78/175 (44%), Positives = 119/175 (68%), Gaps = 4/175 (2%) Query: 4 TTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLA 63 T+ ++II QS L ++ ++++ +++ ++T+VD L WAR SL M +G A Sbjct: 6 TSEFKQIIEQQSEKILNPIER--TKVTQDLSE-NVILTTVDDLYNWARLSSLWPMLYGTA 62 Query: 64 CCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYV 123 CC +E R+D +RFG PR+SPRQ+D++I AGT+T KMA AL R+Y++MPEP+YV Sbjct: 63 CCFIEFAALIGSRFDFDRFGLVPRSSPRQADLIITAGTITMKMAPALVRLYEEMPEPKYV 122 Query: 124 ISMGSCA-NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 I+MG+C GG + S + VRG D+++PVD+Y+PGCPP EA+I I+ L+KK+ Sbjct: 123 IAMGACTITGGMFSSDSTTAVRGVDKLIPVDVYIPGCPPRPEAIIDAIIKLRKKV 177 >gi|329962484|ref|ZP_08300484.1| putative NADH dehydrogenase I subunit B [Bacteroides fluxus YIT 12057] gi|328530040|gb|EGF56928.1| putative NADH dehydrogenase I subunit B [Bacteroides fluxus YIT 12057] Length = 196 Score = 166 bits (420), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 72/137 (52%), Positives = 99/137 (72%), Gaps = 1/137 (0%) Query: 43 VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APRASPRQSDVMIVAGT 101 +D V W R+ SL +TF +CC +E M RYD+ RFGF RASPRQ+D+++V GT Sbjct: 42 LDDFVNWGRSNSLWPLTFATSCCGIEFMALGAARYDMARFGFEVARASPRQADMIMVCGT 101 Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP 161 +TNKMA L+R+YDQM +P+YVI++G CA GG + SY VV G D+I+PVD+Y+PGCPP Sbjct: 102 ITNKMAPVLKRLYDQMADPKYVIAVGGCAVSGGPFKKSYHVVNGVDKILPVDVYIPGCPP 161 Query: 162 TAEALIYGILLLQKKIR 178 EA YG++ LQ+K++ Sbjct: 162 RPEAFYYGMMQLQRKVK 178 >gi|261879876|ref|ZP_06006303.1| NADH dehydrogenase I subunit B [Prevotella bergensis DSM 17361] gi|270333469|gb|EFA44255.1| NADH dehydrogenase I subunit B [Prevotella bergensis DSM 17361] Length = 262 Score = 166 bits (419), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 74/161 (45%), Positives = 109/161 (67%), Gaps = 3/161 (1%) Query: 21 KVDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78 K + RI+ E+ G ++ S+D + W R+ S +TFG +CC +E M RYD Sbjct: 18 KDNDTLERIAKELNDGGANVVLGSLDAAINWGRSNSPWSLTFGTSCCGIEFMAIGCSRYD 77 Query: 79 LERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137 + RFG+ R SPRQ+D+++ AGT+TNKMA +R+YD+M EP+YV+++G C GG + Sbjct: 78 MARFGWEVTRNSPRQADLIMCAGTITNKMAPVFKRLYDEMAEPKYVVAVGGCTISGGPFK 137 Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 SY+VVRG +VPVD+Y+PGCPP E+LIYG++ LQ+KI+ Sbjct: 138 KSYNVVRGISELVPVDVYIPGCPPRPESLIYGMMQLQRKIK 178 >gi|238061184|ref|ZP_04605893.1| NADH-quinone oxidoreductase, B subunit [Micromonospora sp. ATCC 39149] gi|237882995|gb|EEP71823.1| NADH-quinone oxidoreductase, B subunit [Micromonospora sp. ATCC 39149] Length = 204 Score = 166 bits (419), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 76/133 (57%), Positives = 102/133 (76%), Gaps = 1/133 (0%) Query: 46 LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA-SPRQSDVMIVAGTLTN 104 ++ W R SL FGLACCA+E + SM R+D R G P A PRQ+D+M+V+GT+T+ Sbjct: 14 VLNWGRRYSLWVFNFGLACCAIEFIATSMGRHDFIRLGVIPFAHGPRQADLMVVSGTVTD 73 Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164 KMA A++R+Y+QMPEP+YVIS G+C+N GG Y SYSV +G D+++PVD+YVPGCPP E Sbjct: 74 KMAPAIKRLYEQMPEPKYVISFGACSNCGGPYWDSYSVTKGVDQLIPVDVYVPGCPPRPE 133 Query: 165 ALIYGILLLQKKI 177 AL++GIL LQ+KI Sbjct: 134 ALLHGILRLQEKI 146 >gi|294140414|ref|YP_003556392.1| NADH dehydrogenase I subunit B [Shewanella violacea DSS12] gi|293326883|dbj|BAJ01614.1| NADH dehydrogenase I, B subunit [Shewanella violacea DSS12] Length = 219 Score = 166 bits (419), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 76/148 (51%), Positives = 107/148 (72%), Gaps = 2/148 (1%) Query: 32 EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASP 90 E+ K LVT ++ LV W R+ SL FGL+CC VEM + R+D+ RFG RA+P Sbjct: 26 EVVEKNLLVTRLEDLVAWGRSNSLWPFNFGLSCCYVEMATSFTSRHDIARFGSEVIRATP 85 Query: 91 RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150 R++D+++++GT+ KMA ++ +YDQM EP++VISMGSCAN GG Y YSVV+G D+ + Sbjct: 86 READLIVISGTVFLKMAPVIKHLYDQMLEPKWVISMGSCANSGGMYDV-YSVVQGADKFL 144 Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIR 178 P+D+YVPGCPP EAL+YG+ LLQ+ I+ Sbjct: 145 PIDLYVPGCPPRPEALMYGLTLLQEAIK 172 >gi|83589827|ref|YP_429836.1| NADH dehydrogenase subunit B [Moorella thermoacetica ATCC 39073] gi|123524686|sp|Q2RJU6|NUOB_MOOTA RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|83572741|gb|ABC19293.1| NADH dehydrogenase subunit B [Moorella thermoacetica ATCC 39073] Length = 166 Score = 166 bits (419), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 80/142 (56%), Positives = 106/142 (74%), Gaps = 1/142 (0%) Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95 ++++VD ++ + R S +TFGLACCA+EMM A RYD+ RFG+ R SPRQ+D+ Sbjct: 16 NIILSTVDAMLNYCRAHSFWPVTFGLACCAIEMMAAGGARYDIARFGYEVFRPSPRQADL 75 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155 MIVAGT+T KMA +RR+Y+QMP P++VI+MGSCA GG + SY+VV G D IVPVD+Y Sbjct: 76 MIVAGTVTRKMAPLVRRLYEQMPAPKWVIAMGSCAISGGPFVDSYNVVPGVDTIVPVDVY 135 Query: 156 VPGCPPTAEALIYGILLLQKKI 177 VPGC P EALI G+L L+KK+ Sbjct: 136 VPGCAPRPEALINGLLALKKKV 157 >gi|159026401|emb|CAO88930.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 247 Score = 166 bits (419), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 78/175 (44%), Positives = 119/175 (68%), Gaps = 4/175 (2%) Query: 4 TTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLA 63 T+ ++II QS L ++ ++++ +++ ++T+VD L WAR SL M +G A Sbjct: 6 TSEFKQIIEQQSEKILNPIER--TKVTQDLSE-NVILTTVDDLYNWARLSSLWPMLYGTA 62 Query: 64 CCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYV 123 CC +E R+D +RFG PR+SPRQ+D++I AGT+T KMA AL R+Y++MPEP+YV Sbjct: 63 CCFIEFAALIGSRFDFDRFGLVPRSSPRQADLIITAGTVTMKMAPALVRLYEEMPEPKYV 122 Query: 124 ISMGSCA-NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 I+MG+C GG + S + VRG D+++PVD+Y+PGCPP EA+I I+ L+KK+ Sbjct: 123 IAMGACTITGGMFSSDSTTAVRGVDKLIPVDVYIPGCPPRPEAIIDAIIKLRKKV 177 >gi|296133536|ref|YP_003640783.1| NADH-quinone oxidoreductase, B subunit [Thermincola sp. JR] gi|296032114|gb|ADG82882.1| NADH-quinone oxidoreductase, B subunit [Thermincola potens JR] Length = 170 Score = 166 bits (419), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 79/148 (53%), Positives = 106/148 (71%), Gaps = 1/148 (0%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RAS 89 E+ ++++V+ W R+ SL +TFGLACCA+EMM A+ RYDL RFG R S Sbjct: 10 DELVRNNVVLSTVEAAFNWCRSRSLWPLTFGLACCAIEMMAAADTRYDLARFGSEVFRPS 69 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQ D+MI+AGT+T KM + R+Y+QM EP+YV++MGSCA GG + SY+VV G D Sbjct: 70 PRQCDLMIIAGTITKKMQPVVLRLYEQMAEPKYVLAMGSCAISGGPFVDSYNVVLGGDTF 129 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKI 177 +PVD+YVPGCPP EALIYGI+ L++K+ Sbjct: 130 LPVDVYVPGCPPRPEALIYGIMQLREKV 157 >gi|329957597|ref|ZP_08298072.1| putative NADH dehydrogenase I subunit B [Bacteroides clarus YIT 12056] gi|328522474|gb|EGF49583.1| putative NADH dehydrogenase I subunit B [Bacteroides clarus YIT 12056] Length = 195 Score = 166 bits (419), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 72/137 (52%), Positives = 99/137 (72%), Gaps = 1/137 (0%) Query: 43 VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APRASPRQSDVMIVAGT 101 +D V W R+ SL +TF +CC +E M RYD+ RFGF RASPRQ+D+++V GT Sbjct: 42 LDDFVNWGRSNSLWPLTFATSCCGIEFMALGAARYDMARFGFEVARASPRQADMIMVCGT 101 Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP 161 +TNKMA L+R+YDQM +P+YVI++G CA GG + SY VV G D+I+PVD+Y+PGCPP Sbjct: 102 ITNKMAPVLKRLYDQMADPKYVIAVGGCAVSGGPFKKSYHVVNGVDKILPVDVYIPGCPP 161 Query: 162 TAEALIYGILLLQKKIR 178 EA YG++ LQ+K++ Sbjct: 162 RPEAFYYGMMQLQRKVK 178 >gi|300782452|ref|YP_003762743.1| NADH dehydrogenase I subunit B [Amycolatopsis mediterranei U32] gi|299791966|gb|ADJ42341.1| NADH dehydrogenase I subunit B [Amycolatopsis mediterranei U32] Length = 182 Score = 166 bits (419), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 81/149 (54%), Positives = 105/149 (70%), Gaps = 2/149 (1%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RAS 89 E G L+ S++ LV WAR SL TFGLACCA+EMM RYD+ RFG A+ Sbjct: 4 EEKLPNGILLASLEGLVNWARKNSLWPATFGLACCAIEMMTVGGSRYDIARFGMERFSAT 63 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQ+D+MIVAG +T KMA LR++YDQM EPR+V++MG CA+ GG ++ +Y+VV+G D I Sbjct: 64 PRQADLMIVAGRVTQKMAPVLRQIYDQMAEPRWVLAMGVCASSGGMFN-NYAVVQGVDHI 122 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIR 178 VPVD+Y+PGCPP E L+ IL L KI+ Sbjct: 123 VPVDMYLPGCPPRPEMLLDAILKLHAKIQ 151 >gi|238927268|ref|ZP_04659028.1| proton-translocating NADH-ubiquinone oxidoreductase, subunit B [Selenomonas flueggei ATCC 43531] gi|238884855|gb|EEQ48493.1| proton-translocating NADH-ubiquinone oxidoreductase, subunit B [Selenomonas flueggei ATCC 43531] Length = 179 Score = 166 bits (419), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 79/154 (51%), Positives = 108/154 (70%), Gaps = 1/154 (0%) Query: 32 EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASP 90 E + V +D+L+ WA S+ ++ GLACCA+EMM + R+DL RFG+ R P Sbjct: 9 ESLRENVFVVKLDELLRWAHANSIWPLSSGLACCAIEMMTTATARFDLARFGYEVFRPCP 68 Query: 91 RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150 RQ+D+ IVAGTLT KMA A+ R+Y++MPEP+YVI+MG+CA GG + SYSVV G D ++ Sbjct: 69 RQADLFIVAGTLTWKMAPAVVRLYEEMPEPKYVIAMGACAIAGGPFADSYSVVSGVDELL 128 Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 PVD+Y+PGCPP EALI G+L L++KI V+ Sbjct: 129 PVDVYIPGCPPRPEALIDGMLKLREKILHPERVR 162 >gi|254446527|ref|ZP_05060003.1| NADH-quinone oxidoreductase, B subunit subfamily [Verrucomicrobiae bacterium DG1235] gi|198260835|gb|EDY85143.1| NADH-quinone oxidoreductase, B subunit subfamily [Verrucomicrobiae bacterium DG1235] Length = 171 Score = 165 bits (418), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 78/142 (54%), Positives = 104/142 (73%), Gaps = 2/142 (1%) Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95 G +V+ D ++ W RT SL M GLACCA+E+M A ++D+ RFG R SPRQSDV Sbjct: 17 GVIVSKADAVINWIRTHSLWPMPMGLACCAIELMAAGASKFDISRFGAEVMRFSPRQSDV 76 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155 MIVAGT+T KMA +RR+YDQM EP++VI+MG+CA+ GG Y SY+ ++G DRIVPVD+Y Sbjct: 77 MIVAGTVTYKMAPIVRRIYDQMAEPKWVIAMGACASSGGMYR-SYATLQGVDRIVPVDVY 135 Query: 156 VPGCPPTAEALIYGILLLQKKI 177 + GCPP EAL+ ++ LQ K+ Sbjct: 136 ISGCPPRPEALLDALIKLQDKV 157 >gi|326329611|ref|ZP_08195933.1| NADH dehydrogenase I, B subunit [Nocardioidaceae bacterium Broad-1] gi|325952607|gb|EGD44625.1| NADH dehydrogenase I, B subunit [Nocardioidaceae bacterium Broad-1] Length = 184 Score = 165 bits (418), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 80/150 (53%), Positives = 108/150 (72%), Gaps = 2/150 (1%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RAS 89 E G L+T+V+ L + R SL TFGLACCA+EMM + P+YDL R+G RAS Sbjct: 4 EEKLPSGVLLTTVEGLAGYFRKASLWPATFGLACCAIEMMTSGGPKYDLARYGMEVFRAS 63 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQ+D+MIVAG ++ KMA LR++YDQMPEP++V++MG CA+ GG ++ +Y++V+G D I Sbjct: 64 PRQADLMIVAGRVSQKMAPVLRQIYDQMPEPKWVLAMGVCASSGGMFN-NYAIVQGVDHI 122 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRR 179 VPVD+Y+PGCPP E LI IL L KI+ Sbjct: 123 VPVDMYLPGCPPRPEMLIDAILKLHDKIQH 152 >gi|304437258|ref|ZP_07397218.1| NADH-quinone oxidoreductase subunit B [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304369750|gb|EFM23415.1| NADH-quinone oxidoreductase subunit B [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 179 Score = 165 bits (418), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 79/154 (51%), Positives = 108/154 (70%), Gaps = 1/154 (0%) Query: 32 EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASP 90 E + V +D+L+ WA S+ ++ GLACCA+EMM + R+DL RFG+ R P Sbjct: 9 ECLRENVFVVKLDELLRWAHANSVWPLSSGLACCAIEMMTTATARFDLARFGYEVFRPCP 68 Query: 91 RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150 RQ+D+ IVAGTLT KMA A+ R+Y++MPEP+YVI+MG+CA GG + SYSVV G D ++ Sbjct: 69 RQADLFIVAGTLTWKMAPAVVRLYEEMPEPKYVIAMGACAIAGGPFADSYSVVSGVDELL 128 Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 PVD+Y+PGCPP EALI G+L L++KI V+ Sbjct: 129 PVDVYIPGCPPRPEALIDGMLKLREKILHPERVR 162 >gi|160891170|ref|ZP_02072173.1| hypothetical protein BACUNI_03617 [Bacteroides uniformis ATCC 8492] gi|317481067|ref|ZP_07940146.1| NADH-quinone oxidoreductase [Bacteroides sp. 4_1_36] gi|156859391|gb|EDO52822.1| hypothetical protein BACUNI_03617 [Bacteroides uniformis ATCC 8492] gi|316902780|gb|EFV24655.1| NADH-quinone oxidoreductase [Bacteroides sp. 4_1_36] Length = 193 Score = 165 bits (418), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 71/137 (51%), Positives = 99/137 (72%), Gaps = 1/137 (0%) Query: 43 VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APRASPRQSDVMIVAGT 101 +D V W R+ SL +TF +CC +E M RYD+ RFGF RASPRQ+D+++V GT Sbjct: 42 LDDFVNWGRSNSLWPLTFATSCCGIEFMALGAARYDMARFGFEVARASPRQADMIMVCGT 101 Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP 161 +TNKMA L+R+YDQM +P+YV+++G CA GG + SY VV G D+I+PVD+Y+PGCPP Sbjct: 102 ITNKMAPVLKRLYDQMADPKYVVAVGGCAVSGGPFKKSYHVVNGVDKILPVDVYIPGCPP 161 Query: 162 TAEALIYGILLLQKKIR 178 EA YG++ LQ+K++ Sbjct: 162 RPEAFYYGMMQLQRKVK 178 >gi|269128582|ref|YP_003301952.1| NADH-quinone oxidoreductase subunit B [Thermomonospora curvata DSM 43183] gi|268313540|gb|ACY99914.1| NADH-quinone oxidoreductase, B subunit [Thermomonospora curvata DSM 43183] Length = 323 Score = 165 bits (418), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 77/133 (57%), Positives = 101/133 (75%), Gaps = 1/133 (0%) Query: 46 LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS-PRQSDVMIVAGTLTN 104 ++ W R SL FGLACCA+E + ASM R+D R G P A PRQ+D+M+V+GT+T+ Sbjct: 25 VLNWGRRYSLWVFNFGLACCAIEFIAASMSRHDFIRLGVIPFAPGPRQADLMVVSGTVTD 84 Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164 KMA A+RR+Y+QMPEP+YVIS G+C+N GG Y SY V +G D+I+PVD+YVPGCPP E Sbjct: 85 KMAPAVRRLYEQMPEPKYVISFGACSNCGGPYWDSYCVTKGVDQIIPVDVYVPGCPPRPE 144 Query: 165 ALIYGILLLQKKI 177 AL+ GI+ LQ+KI Sbjct: 145 ALLQGIVRLQEKI 157 >gi|167764930|ref|ZP_02437051.1| hypothetical protein BACSTE_03322 [Bacteroides stercoris ATCC 43183] gi|167697599|gb|EDS14178.1| hypothetical protein BACSTE_03322 [Bacteroides stercoris ATCC 43183] Length = 195 Score = 165 bits (417), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 71/137 (51%), Positives = 99/137 (72%), Gaps = 1/137 (0%) Query: 43 VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APRASPRQSDVMIVAGT 101 +D + W R+ SL +TF +CC +E M RYD+ RFGF RASPRQ+D+++V GT Sbjct: 42 LDDFIDWGRSNSLWPLTFATSCCGIEFMALGAARYDMARFGFEVARASPRQADMIMVCGT 101 Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP 161 +TNKMA L+R+YDQM +P+YVI++G CA GG + SY VV G D+I+PVD+Y+PGCPP Sbjct: 102 ITNKMAPVLKRLYDQMADPKYVIAVGGCAVSGGPFKKSYHVVNGVDKILPVDVYIPGCPP 161 Query: 162 TAEALIYGILLLQKKIR 178 EA YG++ LQ+K++ Sbjct: 162 RPEAFYYGMMQLQRKVK 178 >gi|326382762|ref|ZP_08204452.1| NADH dehydrogenase subunit B [Gordonia neofelifaecis NRRL B-59395] gi|326198352|gb|EGD55536.1| NADH dehydrogenase subunit B [Gordonia neofelifaecis NRRL B-59395] Length = 184 Score = 165 bits (417), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 78/145 (53%), Positives = 110/145 (75%), Gaps = 2/145 (1%) Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APRASPRQSDV 95 GF++++V+ L + R GSL TFGLACCA+EMM + RYDL RFG A RASPRQ+D+ Sbjct: 10 GFVLSTVESLAGYFRKGSLWPATFGLACCAIEMMATTAGRYDLARFGMEAFRASPRQADL 69 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155 MIVAG ++ KMA LR++YDQM EP++V++MG CA+ GG ++ +Y++V+G D +VPVDIY Sbjct: 70 MIVAGRVSQKMAPVLRQIYDQMAEPKWVLAMGVCASSGGMFN-NYAIVQGVDHVVPVDIY 128 Query: 156 VPGCPPTAEALIYGILLLQKKIRRV 180 +PGCPP E L+ IL L +I+++ Sbjct: 129 LPGCPPRPEMLLNAILELHDQIQQM 153 >gi|163751847|ref|ZP_02159062.1| NADH dehydrogenase beta subunit [Shewanella benthica KT99] gi|161328263|gb|EDP99425.1| NADH dehydrogenase beta subunit [Shewanella benthica KT99] Length = 218 Score = 165 bits (417), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 75/148 (50%), Positives = 107/148 (72%), Gaps = 2/148 (1%) Query: 32 EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASP 90 E+ K L+T ++ LV W R+ SL FGL+CC VEM + R+D+ RFG RA+P Sbjct: 25 EVVEKNLLITRLEDLVAWGRSNSLWPFNFGLSCCYVEMATSFTSRHDIARFGSEVIRATP 84 Query: 91 RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150 R++D+++++GT+ KMA ++ +YDQM EP++VISMGSCAN GG Y YSVV+G D+ + Sbjct: 85 READLIVISGTVFLKMAPVIKHLYDQMLEPKWVISMGSCANSGGMYDV-YSVVQGADKFL 143 Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIR 178 P+D+YVPGCPP EAL+YG+ LLQ+ I+ Sbjct: 144 PIDLYVPGCPPRPEALMYGLTLLQEAIK 171 >gi|196231863|ref|ZP_03130719.1| NADH-quinone oxidoreductase, B subunit [Chthoniobacter flavus Ellin428] gi|196223985|gb|EDY18499.1| NADH-quinone oxidoreductase, B subunit [Chthoniobacter flavus Ellin428] Length = 178 Score = 164 bits (416), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 76/141 (53%), Positives = 106/141 (75%), Gaps = 2/141 (1%) Query: 39 LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMI 97 ++T +D + W R SL M GLACCA+E+M A R+D+ RFG R SPRQSDVMI Sbjct: 18 IITQLDAAMNWMRKNSLWPMPMGLACCAIELMAAGASRFDIARFGAEVMRFSPRQSDVMI 77 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGT+T KMA A++R++DQMPEP++ I+MG+CA+ GG Y SY+V++G D+++PVD+Y+ Sbjct: 78 VAGTVTYKMALAVKRIWDQMPEPKWCIAMGACASSGGMYR-SYAVLQGIDQLIPVDVYIS 136 Query: 158 GCPPTAEALIYGILLLQKKIR 178 GCPP EAL+ G++ LQ+KI Sbjct: 137 GCPPRPEALLEGLMKLQRKIE 157 >gi|145225061|ref|YP_001135739.1| NADH dehydrogenase subunit B [Mycobacterium gilvum PYR-GCK] gi|315445430|ref|YP_004078309.1| NADH dehydrogenase subunit B [Mycobacterium sp. Spyr1] gi|238065177|sp|A4TDB9|NUOB_MYCGI RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|145217547|gb|ABP46951.1| NADH dehydrogenase subunit B [Mycobacterium gilvum PYR-GCK] gi|315263733|gb|ADU00475.1| NADH dehydrogenase subunit B [Mycobacterium sp. Spyr1] Length = 184 Score = 164 bits (416), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 75/145 (51%), Positives = 110/145 (75%), Gaps = 2/145 (1%) Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95 G L+++V+++ + R GSL TFGLACCA+EMM + PR+D+ RFG A+PRQ+D+ Sbjct: 10 GILLSTVEKVAGYVRKGSLWPATFGLACCAIEMMATAGPRFDISRFGMERFSATPRQADL 69 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155 MIVAG ++ KMA LR++YDQM EP++V++MG CA+ GG ++ +Y+VV+G D +VPVDIY Sbjct: 70 MIVAGRVSQKMAPVLRQIYDQMAEPKWVLAMGVCASSGGMFN-NYAVVQGVDHVVPVDIY 128 Query: 156 VPGCPPTAEALIYGILLLQKKIRRV 180 +PGCPP E L++ IL L KI+++ Sbjct: 129 LPGCPPRPEMLLHAILKLHDKIQQM 153 >gi|296081619|emb|CBI20624.3| unnamed protein product [Vitis vinifera] Length = 94 Score = 164 bits (415), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 76/84 (90%), Positives = 81/84 (96%) Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155 MIVAGTLTNKMA ALR+VYDQMPEPR+V+SMGSCANGGGYYHYSYSVVRGCDRIVPVDIY Sbjct: 1 MIVAGTLTNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 60 Query: 156 VPGCPPTAEALIYGILLLQKKIRR 179 VPGCPPTAEAL+YG+L LQKKI R Sbjct: 61 VPGCPPTAEALLYGLLQLQKKINR 84 >gi|256390056|ref|YP_003111620.1| NADH-quinone oxidoreductase subunit beta [Catenulispora acidiphila DSM 44928] gi|256356282|gb|ACU69779.1| NADH-quinone oxidoreductase, B subunit [Catenulispora acidiphila DSM 44928] Length = 291 Score = 164 bits (415), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 75/133 (56%), Positives = 100/133 (75%), Gaps = 1/133 (0%) Query: 46 LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS-PRQSDVMIVAGTLTN 104 ++ W R SL FGLACCA+E + SM R+D R G P A PRQ+D+M+V+GT+++ Sbjct: 41 VLNWGRRYSLWVFNFGLACCAIEFIATSMARHDFIRLGVIPFAPGPRQADLMVVSGTVSD 100 Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164 KMA A++R+YDQMPEP+YVIS GSC+N GG Y SY V +G D+++PVD+YVPGCPP E Sbjct: 101 KMAPAVKRLYDQMPEPKYVISFGSCSNCGGPYWDSYCVTKGVDQVIPVDVYVPGCPPRPE 160 Query: 165 ALIYGILLLQKKI 177 AL+ GI+ LQ+KI Sbjct: 161 ALLQGIIKLQEKI 173 >gi|298244920|ref|ZP_06968726.1| NADH-quinone oxidoreductase, B subunit [Ktedonobacter racemifer DSM 44963] gi|297552401|gb|EFH86266.1| NADH-quinone oxidoreductase, B subunit [Ktedonobacter racemifer DSM 44963] Length = 201 Score = 164 bits (415), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 79/136 (58%), Positives = 104/136 (76%), Gaps = 2/136 (1%) Query: 48 TWARTGSLMWMTFGLACCAVEMM-QASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNK 105 WAR+ S+ + +GLACCA+EM+ AS P+YDL RFG R+SPRQ+D+MIVAGT++ K Sbjct: 55 NWARSKSVWPLGYGLACCAIEMIASASAPQYDLSRFGSEVFRSSPRQADLMIVAGTVSIK 114 Query: 106 MASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEA 165 M LR +Y+QMPEP++VISMG CAN GG ++ SY V+G D IVPVD+Y+PGCPP EA Sbjct: 115 MGPRLRLLYEQMPEPKWVISMGQCANSGGEFYDSYYTVQGVDTIVPVDVYIPGCPPRPEA 174 Query: 166 LIYGILLLQKKIRRVG 181 LI G+L L++KI + G Sbjct: 175 LIEGLLKLREKIAKQG 190 >gi|302523878|ref|ZP_07276220.1| NADH dehydrogenase subunit I B [Streptomyces sp. AA4] gi|302432773|gb|EFL04589.1| NADH dehydrogenase subunit I B [Streptomyces sp. AA4] Length = 182 Score = 164 bits (415), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 81/149 (54%), Positives = 104/149 (69%), Gaps = 2/149 (1%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RAS 89 E G L+ S++ LV WAR SL TFGLACCA EMM RYD+ RFG A+ Sbjct: 4 EEKLPNGILLASLEGLVNWARKNSLWPATFGLACCAFEMMSVGGSRYDIARFGMERFSAT 63 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQ+D+MIVAG +T KMA LR++YDQM EP++V+SMG CA+ GG ++ +Y+VV+G D I Sbjct: 64 PRQADLMIVAGRVTQKMAPVLRQIYDQMAEPKWVLSMGVCASSGGMFN-NYAVVQGVDHI 122 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIR 178 VPVD+Y+PGCPP E L+ IL L KI+ Sbjct: 123 VPVDMYLPGCPPRPEMLLDAILKLHAKIQ 151 >gi|182412567|ref|YP_001817633.1| NADH-quinone oxidoreductase, B subunit [Opitutus terrae PB90-1] gi|238065033|sp|B1ZUJ0|NUOB2_OPITP RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName: Full=NADH dehydrogenase I subunit B 2; AltName: Full=NDH-1 subunit B 2 gi|177839781|gb|ACB74033.1| NADH-quinone oxidoreductase, B subunit [Opitutus terrae PB90-1] Length = 191 Score = 164 bits (415), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 81/142 (57%), Positives = 102/142 (71%), Gaps = 7/142 (4%) Query: 41 TSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFG---FAPRASPRQSDVMI 97 +D L+ R SL +TFGLACCA+EMM A M R+D+ RFG F R SPRQ+DVMI Sbjct: 39 AKLDDLLALGRANSLWPLTFGLACCAIEMMAAGMARFDISRFGAEVF--RPSPRQADVMI 96 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY--SYSVVRGCDRIVPVDIY 155 VAGT+ KMA A++ +YDQM EP++VI+MG CA GG + Y Y+VV G D++ PVD+Y Sbjct: 97 VAGTVNKKMAPAVKLLYDQMLEPKWVIAMGQCAISGGPFKYPGQYAVVEGVDQLFPVDVY 156 Query: 156 VPGCPPTAEALIYGILLLQKKI 177 VPGCPP EALI GIL L++KI Sbjct: 157 VPGCPPRPEALIEGILKLEEKI 178 >gi|170727205|ref|YP_001761231.1| NADH-quinone oxidoreductase subunit B [Shewanella woodyi ATCC 51908] gi|238065215|sp|B1KJU9|NUOB_SHEWM RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|169812552|gb|ACA87136.1| NADH-quinone oxidoreductase, B subunit [Shewanella woodyi ATCC 51908] Length = 213 Score = 164 bits (414), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 76/149 (51%), Positives = 106/149 (71%), Gaps = 2/149 (1%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RAS 89 E+ K LVT ++ LV W R+ SL FGL+CC VEM + R+D+ RFG RA+ Sbjct: 19 QEVVEKNLLVTRLEDLVAWGRSNSLWPFNFGLSCCYVEMATSFTSRHDIARFGSEVIRAT 78 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PR++D+++++GT+ KMA ++ +YDQM EP++VI MGSCAN GG Y YSVV+G DR Sbjct: 79 PREADLIVISGTVFLKMAPVIKHLYDQMLEPKWVICMGSCANSGGMYDV-YSVVQGADRF 137 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIR 178 +P+D+YVPGCPP EAL+YG+ LLQ+ I+ Sbjct: 138 LPIDLYVPGCPPRPEALMYGLTLLQEAIK 166 >gi|120402882|ref|YP_952711.1| NADH dehydrogenase subunit B [Mycobacterium vanbaalenii PYR-1] gi|238065183|sp|A1T6A5|NUOB_MYCVP RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|119955700|gb|ABM12705.1| NADH dehydrogenase subunit B [Mycobacterium vanbaalenii PYR-1] Length = 184 Score = 164 bits (414), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 75/145 (51%), Positives = 110/145 (75%), Gaps = 2/145 (1%) Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95 G L+++V+++ + R GSL TFGLACCA+EMM + PR+D+ RFG A+PRQ+D+ Sbjct: 10 GILLSTVEKVAGYVRKGSLWPATFGLACCAIEMMATAGPRFDISRFGMERFSATPRQADL 69 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155 MIVAG ++ KMA LR++YDQM EP++V++MG CA+ GG ++ +Y+VV+G D +VPVDIY Sbjct: 70 MIVAGRVSQKMAPVLRQIYDQMAEPKWVLAMGVCASSGGMFN-NYAVVQGVDHVVPVDIY 128 Query: 156 VPGCPPTAEALIYGILLLQKKIRRV 180 +PGCPP E L++ IL L KI+++ Sbjct: 129 LPGCPPRPEMLLHAILKLHDKIQQM 153 >gi|227494504|ref|ZP_03924820.1| NADH dehydrogenase (quinone) [Actinomyces coleocanis DSM 15436] gi|226832238|gb|EEH64621.1| NADH dehydrogenase (quinone) [Actinomyces coleocanis DSM 15436] Length = 184 Score = 164 bits (414), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 75/144 (52%), Positives = 110/144 (76%), Gaps = 2/144 (1%) Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95 G +TS++ ++ AR S +T GLACC++EMM A PR+D+ RFG RASPR +D+ Sbjct: 10 GVALTSIEAVLDLARKHSQWPVTMGLACCSIEMMSAGTPRFDMARFGLEVFRASPRHADL 69 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155 MI+AG +++KMA +RRVYD MPEP++VI+MG+CA+ GG ++ +Y++V+G D IVPVD+Y Sbjct: 70 MIIAGRMSHKMAPIVRRVYDSMPEPKWVIAMGACASSGGMFN-NYALVQGADHIVPVDVY 128 Query: 156 VPGCPPTAEALIYGILLLQKKIRR 179 +PGCPP EALI IL+L+++I + Sbjct: 129 LPGCPPRPEALINSILVLREQISK 152 >gi|255019940|ref|ZP_05292014.1| NADH-ubiquinone oxidoreductase chain B [Acidithiobacillus caldus ATCC 51756] gi|254970599|gb|EET28087.1| NADH-ubiquinone oxidoreductase chain B [Acidithiobacillus caldus ATCC 51756] Length = 162 Score = 164 bits (414), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 78/143 (54%), Positives = 105/143 (73%), Gaps = 2/143 (1%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APRASPRQSDVM 96 L +D+L+ W+R GSL + FG +CC +EM+ A PR+D+ RFG R+SPRQ+DV+ Sbjct: 10 LLAGKLDELIAWSRAGSLWPLNFGTSCCFIEMVAAVTPRHDIARFGAEVLRSSPRQADVL 69 Query: 97 IVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV 156 I +GT+ KMA + +Y QM EP++VISMGSCAN GG Y YSV++G D+I+PVD+YV Sbjct: 70 ICSGTVFAKMAPMIVEIYAQMLEPKWVISMGSCANSGGMYDV-YSVIQGLDQILPVDVYV 128 Query: 157 PGCPPTAEALIYGILLLQKKIRR 179 PGCPP EAL G+LLLQ+KIR+ Sbjct: 129 PGCPPRPEALTDGLLLLQRKIRQ 151 >gi|312200066|ref|YP_004020127.1| NADH-quinone oxidoreductase B subunit [Frankia sp. EuI1c] gi|311231402|gb|ADP84257.1| NADH-quinone oxidoreductase, B subunit [Frankia sp. EuI1c] Length = 276 Score = 164 bits (414), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 79/149 (53%), Positives = 107/149 (71%), Gaps = 2/149 (1%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RAS 89 E G L+ SV++L R SL +TFGLACCA+EMM RYDL RFG RAS Sbjct: 4 EEKLPSGVLLASVEKLAGMGRKSSLWPVTFGLACCAIEMMGTGAARYDLARFGMEVFRAS 63 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQ+D+MIVAG ++ KMA LR++YDQMPEP++V+SMG CA+ GG ++ +Y++V+G D I Sbjct: 64 PRQADLMIVAGRVSQKMAPVLRQIYDQMPEPKWVLSMGVCASSGGMFN-NYAIVQGVDHI 122 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIR 178 VPVD+Y+PGCPP E L+ I+ + +KI+ Sbjct: 123 VPVDMYLPGCPPRPEMLMDAIMKIHRKIQ 151 >gi|297563968|ref|YP_003682941.1| NADH-quinone oxidoreductase, B subunit [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296848417|gb|ADH70435.1| NADH-quinone oxidoreductase, B subunit [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 181 Score = 164 bits (414), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 75/143 (52%), Positives = 106/143 (74%), Gaps = 2/143 (1%) Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95 G ++T+V+Q+V AR S+ TFGLACCA+EMM P YDL RFG A+PRQ+D+ Sbjct: 10 GIMLTTVEQVVGLARKSSMWPATFGLACCAIEMMSVGGPHYDLARFGMEKFGATPRQADL 69 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155 MIVAG ++ KMA LR++YDQMPEP++VI+MG CA+ GG ++ +Y++V+G D +VPVD+Y Sbjct: 70 MIVAGRVSQKMAPVLRQIYDQMPEPKWVIAMGVCASSGGMFN-NYAIVQGVDHVVPVDMY 128 Query: 156 VPGCPPTAEALIYGILLLQKKIR 178 +PGCPP E L+ +L L K++ Sbjct: 129 LPGCPPRPEMLLDAVLKLHDKVQ 151 >gi|38505806|ref|NP_942425.1| NADH dehydrogenase subunit B [Synechocystis sp. PCC 6803] gi|131407|sp|P17062|NDHK2_SYNY3 RecName: Full=NAD(P)H-quinone oxidoreductase subunit K 2; AltName: Full=NAD(P)H dehydrogenase I subunit K 2; AltName: Full=NDH-1 subunit K 2; Short=NDH-K 2 gi|48068|emb|CAA35236.1| unnamed protein product [Synechocystis sp. PCC 6803] gi|38423830|dbj|BAD02039.1| NADH dehydrogenase subunit [Synechocystis sp. PCC 6803] Length = 219 Score = 164 bits (414), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 75/151 (49%), Positives = 110/151 (72%), Gaps = 2/151 (1%) Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87 +++ E++ + ++T +D + WAR +L M FG ACC +E M A PR+DLERFG PR Sbjct: 18 QVTKELS-ENVILTCLDDIYNWARLSTLYPMMFGTACCFMEFMAAFGPRFDLERFGSIPR 76 Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGC 146 A+PRQ+D+MI AGT+T K A AL ++Y+Q+PEP+YVI+MG+C G + S + VRG Sbjct: 77 ATPRQADLMITAGTITMKYAPALVQLYEQIPEPKYVIAMGACTITAGMFSADSPTAVRGV 136 Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 D+++PVD+Y+PGCPP EA+I GI+ L+KK+ Sbjct: 137 DKLIPVDVYIPGCPPRPEAVIDGIIKLRKKV 167 >gi|41409300|ref|NP_962136.1| NADH dehydrogenase subunit B [Mycobacterium avium subsp. paratuberculosis K-10] gi|118465722|ref|YP_883186.1| NADH dehydrogenase subunit B [Mycobacterium avium 104] gi|254776456|ref|ZP_05217972.1| NADH dehydrogenase subunit B [Mycobacterium avium subsp. avium ATCC 25291] gi|296169191|ref|ZP_06850844.1| NADH-quinone oxidoreductase subunit B [Mycobacterium parascrofulaceum ATCC BAA-614] gi|81571071|sp|Q73V14|NUOB_MYCPA RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|238065174|sp|A0QJU8|NUOB_MYCA1 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|41398120|gb|AAS05750.1| NuoB [Mycobacterium avium subsp. paratuberculosis K-10] gi|118167009|gb|ABK67906.1| NADH-quinone oxidoreductase chain b [Mycobacterium avium 104] gi|295896089|gb|EFG75756.1| NADH-quinone oxidoreductase subunit B [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 184 Score = 164 bits (414), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 74/145 (51%), Positives = 110/145 (75%), Gaps = 2/145 (1%) Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95 G L+++V+++ + R SL TFGLACCA+EMM + PR+D+ RFG A+PRQ+D+ Sbjct: 10 GILLSTVEKVAGYVRKNSLWPATFGLACCAIEMMATAGPRFDIARFGMERFSATPRQADL 69 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155 MIVAG ++ KMA LR++YDQM EP++V++MG CA+ GG ++ +Y++V+G D +VPVDIY Sbjct: 70 MIVAGRVSQKMAPVLRQIYDQMAEPKWVLAMGVCASSGGMFN-NYAIVQGVDHVVPVDIY 128 Query: 156 VPGCPPTAEALIYGILLLQKKIRRV 180 +PGCPP E L+Y IL L +KI+++ Sbjct: 129 LPGCPPRPEMLLYAILKLHEKIQQM 153 >gi|108798549|ref|YP_638746.1| NADH dehydrogenase subunit B [Mycobacterium sp. MCS] gi|126434147|ref|YP_001069838.1| NADH dehydrogenase subunit B [Mycobacterium sp. JLS] gi|122977218|sp|Q1BBP4|NUOB_MYCSS RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|238065180|sp|A3PWS0|NUOB_MYCSJ RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|108768968|gb|ABG07690.1| NADH dehydrogenase subunit B [Mycobacterium sp. MCS] gi|126233947|gb|ABN97347.1| NADH dehydrogenase subunit B [Mycobacterium sp. JLS] Length = 184 Score = 164 bits (414), Expect = 8e-39, Method: Compositional matrix adjust. Identities = 73/145 (50%), Positives = 111/145 (76%), Gaps = 2/145 (1%) Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95 G L+++V+++ + R GSL TFGLACCA+EMM + PR+D+ RFG A+PRQ+D+ Sbjct: 10 GILLSTVEKVAGYVRAGSLWPATFGLACCAIEMMSTAGPRFDISRFGMERFSATPRQADL 69 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155 MIVAG ++ KMA LR++YDQM EP++V++MG CA+ GG ++ +Y++V+G D +VPVDIY Sbjct: 70 MIVAGRVSQKMAPVLRQIYDQMAEPKWVLAMGVCASSGGMFN-NYAIVQGVDHVVPVDIY 128 Query: 156 VPGCPPTAEALIYGILLLQKKIRRV 180 +PGCPP E L++ I+ L +KI+++ Sbjct: 129 LPGCPPRPEMLLHAIIKLHEKIQQM 153 >gi|54024635|ref|YP_118877.1| NADH dehydrogenase subunit B [Nocardia farcinica IFM 10152] gi|81602742|sp|Q5YWC8|NUOB_NOCFA RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|54016143|dbj|BAD57513.1| putative NADH dehydrogenase I chain B [Nocardia farcinica IFM 10152] Length = 184 Score = 163 bits (413), Expect = 8e-39, Method: Compositional matrix adjust. Identities = 79/150 (52%), Positives = 107/150 (71%), Gaps = 2/150 (1%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APRAS 89 E GFL+++V+ + R GS+ TFGLACCA+EMM R+D+ RFG A RAS Sbjct: 4 EEKLPSGFLLSTVESFAGYLRKGSVWPATFGLACCAIEMMATGAGRFDIARFGMEAFRAS 63 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQ+D+MIVAG ++ KMA LR+VYDQM EP++V++MG CA+ GG ++ +Y+VV+G D + Sbjct: 64 PRQADLMIVAGRVSQKMAPVLRQVYDQMAEPKWVLAMGVCASSGGMFN-NYAVVQGVDHV 122 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRR 179 VPVDIY+PGCPP E L+ IL L KI+ Sbjct: 123 VPVDIYLPGCPPRPEMLLNAILALHDKIQH 152 >gi|116624397|ref|YP_826553.1| NADH dehydrogenase subunit B [Candidatus Solibacter usitatus Ellin6076] gi|122252953|sp|Q01VP7|NUOB2_SOLUE RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName: Full=NADH dehydrogenase I subunit B 2; AltName: Full=NDH-1 subunit B 2 gi|116227559|gb|ABJ86268.1| NADH-quinone oxidoreductase, B subunit [Candidatus Solibacter usitatus Ellin6076] Length = 184 Score = 163 bits (413), Expect = 8e-39, Method: Compositional matrix adjust. Identities = 75/151 (49%), Positives = 112/151 (74%), Gaps = 4/151 (2%) Query: 36 KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSD 94 +G ++T++D V WAR S+ MTFGLACCA+EMM S R+D+ RFG R SPRQSD Sbjct: 31 EGIVMTTLDAAVNWARKNSIWPMTFGLACCAIEMMSMSASRFDIARFGAEVFRGSPRQSD 90 Query: 95 VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154 +MI+AG ++NKMA +R +Y QMPEP++ ISMG+CA G ++ +Y+++ ++++P+D+ Sbjct: 91 LMIIAGRVSNKMAPVIRHLYQQMPEPKWAISMGACATSTGVFN-NYALI-PVNQVIPIDV 148 Query: 155 YVPGCPPTAEALIYGILLLQKKIR-RVGNVK 184 +VPGCPP E LIY +++LQ+KI+ + G VK Sbjct: 149 FVPGCPPRPEQLIYALMMLQEKIKNQSGTVK 179 >gi|254821135|ref|ZP_05226136.1| NADH dehydrogenase subunit B [Mycobacterium intracellulare ATCC 13950] Length = 184 Score = 163 bits (412), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 74/145 (51%), Positives = 109/145 (75%), Gaps = 2/145 (1%) Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95 G L+++V+++ + R SL TFGLACCA+EMM + PR+D+ RFG A+PRQ+D+ Sbjct: 10 GILLSTVEKVAGYVRKNSLWPATFGLACCAIEMMATAGPRFDIARFGMERFSATPRQADL 69 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155 MIVAG ++ KMA LR++YDQM EP++V++MG CA+ GG ++ +Y++V+G D +VPVDIY Sbjct: 70 MIVAGRVSQKMAPVLRQIYDQMAEPKWVLAMGVCASSGGMFN-NYAIVQGVDHVVPVDIY 128 Query: 156 VPGCPPTAEALIYGILLLQKKIRRV 180 +PGCPP E L+Y IL L +KI+ + Sbjct: 129 LPGCPPRPEMLLYAILKLHEKIQEM 153 >gi|313202843|ref|YP_004041500.1| NADH dehydrogenase subunit b [Paludibacter propionicigenes WB4] gi|312442159|gb|ADQ78515.1| NADH dehydrogenase subunit B [Paludibacter propionicigenes WB4] Length = 194 Score = 163 bits (412), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 68/141 (48%), Positives = 104/141 (73%), Gaps = 1/141 (0%) Query: 39 LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APRASPRQSDVMI 97 +++ +D+L+ W R+ S+ + + +CC +E M ++ +D+ RFG R SPRQ+D+MI Sbjct: 44 VLSKIDELINWGRSNSVWPLIYATSCCGIEFMASAAAHHDISRFGMEVTRNSPRQADLMI 103 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGT+ +KMA ++RVYDQM EP+YV++MG+CA GG + SY VV G D+I+PVD+Y+P Sbjct: 104 VAGTMVHKMAPLIKRVYDQMAEPKYVVAMGACAISGGPFVNSYHVVPGVDQIIPVDVYIP 163 Query: 158 GCPPTAEALIYGILLLQKKIR 178 GCPP E+L YG++ LQ+KI+ Sbjct: 164 GCPPRPESLFYGLMQLQRKIK 184 >gi|72163093|ref|YP_290750.1| NADH dehydrogenase subunit B [Thermobifida fusca YX] gi|123628754|sp|Q47LE5|NUOB_THEFY RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|71916825|gb|AAZ56727.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit [Thermobifida fusca YX] Length = 185 Score = 163 bits (412), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 77/143 (53%), Positives = 106/143 (74%), Gaps = 2/143 (1%) Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95 G L+T+V+Q+V + R S+ TFGLACCA+EMM A PR+D+ RFG A+PRQ+D+ Sbjct: 10 GVLLTTVEQIVGFVRKTSMWPATFGLACCAIEMMAAGGPRFDIARFGMERFSATPRQADL 69 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155 MIVAG ++ KMA LR +YDQM EP++VI+MG CA+ GG ++ +Y++V+G D IVPVDIY Sbjct: 70 MIVAGRVSQKMAPVLRTIYDQMAEPKWVIAMGVCASSGGMFN-NYAIVQGVDHIVPVDIY 128 Query: 156 VPGCPPTAEALIYGILLLQKKIR 178 +PGCPP E L+ IL L K++ Sbjct: 129 LPGCPPRPEMLLDAILKLHDKVQ 151 >gi|187736633|ref|YP_001878745.1| NADH-quinone oxidoreductase, B subunit [Akkermansia muciniphila ATCC BAA-835] gi|238065050|sp|B2UPT6|NUOB_AKKM8 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|187426685|gb|ACD05964.1| NADH-quinone oxidoreductase, B subunit [Akkermansia muciniphila ATCC BAA-835] Length = 193 Score = 162 bits (411), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 76/142 (53%), Positives = 105/142 (73%), Gaps = 2/142 (1%) Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APRASPRQSDV 95 F+ T++D + W R SL M GL+CCA+E M + RYDL RFG R SPRQ+DV Sbjct: 22 NFVYTTLDAAINWIRKNSLWPMPMGLSCCAIEFMAVACSRYDLSRFGSEVTRFSPRQADV 81 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155 MIVAGT+T KMA A+RR++DQMPEP++ I+MG+CA+ GG + SYSV++G D+I+PVD+Y Sbjct: 82 MIVAGTVTYKMALAVRRIWDQMPEPKWCIAMGACASTGGMFR-SYSVLQGVDKILPVDVY 140 Query: 156 VPGCPPTAEALIYGILLLQKKI 177 + GCPP EA++ +L L+KK+ Sbjct: 141 ISGCPPRPEAILEALLTLRKKL 162 >gi|90579190|ref|ZP_01235000.1| NADH dehydrogenase beta subunit [Vibrio angustum S14] gi|90440023|gb|EAS65204.1| NADH dehydrogenase beta subunit [Vibrio angustum S14] Length = 183 Score = 162 bits (411), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 77/141 (54%), Positives = 104/141 (73%), Gaps = 2/141 (1%) Query: 39 LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMI 97 +V VD L++++R SL FG +CC VEMM A+ PRYD+ RFG R SPRQSDV+I Sbjct: 25 IVGKVDDLISYSRKHSLWPYNFGTSCCFVEMMTAATPRYDMARFGSEVLRGSPRQSDVLI 84 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 AGT KMA ++ +YDQM EP++VISMGSC+N GG Y YSVV+G D+I+PVD+YVP Sbjct: 85 TAGTCFVKMAPLMKHIYDQMLEPKWVISMGSCSNSGGMYDI-YSVVQGVDKILPVDVYVP 143 Query: 158 GCPPTAEALIYGILLLQKKIR 178 GCPP +AL+ G+++LQ+ ++ Sbjct: 144 GCPPRPDALLEGLIMLQEHVQ 164 >gi|51892725|ref|YP_075416.1| NADH dehydrogenase I subunit B [Symbiobacterium thermophilum IAM 14863] gi|51856414|dbj|BAD40572.1| NADH dehydrogenase I subunit B [Symbiobacterium thermophilum IAM 14863] Length = 153 Score = 162 bits (411), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 74/143 (51%), Positives = 111/143 (77%), Gaps = 3/143 (2%) Query: 39 LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQ-ASMPRYDLERFGF-APRASPRQSDVM 96 + T+VD + WA++ S+ +TFGLACCA+EMM AS PRYD+ RFG A RASPRQ+D++ Sbjct: 1 MTTTVDSFLRWAQSNSIWPLTFGLACCAIEMMNLASGPRYDIARFGSEAFRASPRQADLI 60 Query: 97 IVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV 156 ++G ++NKMA ++RVY QM EP++V++ G+CA+ GG + +Y++++G D ++PVDIYV Sbjct: 61 FISGRVSNKMAPVIKRVYSQMLEPKWVVAFGACASSGGIFD-NYAIMQGVDNLLPVDIYV 119 Query: 157 PGCPPTAEALIYGILLLQKKIRR 179 PGCPPT EA+IY + L+ +IR+ Sbjct: 120 PGCPPTPEAVIYAVQKLRDRIRK 142 >gi|257077079|ref|ZP_05571440.1| NADH dehydrogenase subunit B [Ferroplasma acidarmanus fer1] Length = 157 Score = 162 bits (411), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 76/143 (53%), Positives = 102/143 (71%), Gaps = 1/143 (0%) Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95 G T++++ + W R+ SL +T GLACCA+EMM D+ RFG R SPRQSD+ Sbjct: 10 GVKTTTLEKALQWGRSNSLWPLTMGLACCAIEMMATQAADLDMARFGSEIFRNSPRQSDL 69 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155 MIVAGT T +MA ++R+Y++MP P+YVI+MG C GG Y YSVV G D+++PVD+Y Sbjct: 70 MIVAGTTTKRMAPRVKRIYEEMPYPKYVIAMGVCVIQGGPYVDGYSVVLGVDKVIPVDVY 129 Query: 156 VPGCPPTAEALIYGILLLQKKIR 178 VPGCPP+ +AL YG++ LQKKIR Sbjct: 130 VPGCPPSPQALTYGLITLQKKIR 152 >gi|89073316|ref|ZP_01159846.1| NADH dehydrogenase beta subunit [Photobacterium sp. SKA34] gi|89051026|gb|EAR56490.1| NADH dehydrogenase beta subunit [Photobacterium sp. SKA34] Length = 183 Score = 162 bits (411), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 77/141 (54%), Positives = 104/141 (73%), Gaps = 2/141 (1%) Query: 39 LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMI 97 +V VD L++++R SL FG +CC VEMM A+ PRYD+ RFG R SPRQSDV+I Sbjct: 25 IVGKVDDLISYSRKHSLWPYNFGTSCCFVEMMTAATPRYDMARFGSEVLRGSPRQSDVLI 84 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 AGT KMA ++ +YDQM EP++VISMGSC+N GG Y YSVV+G D+I+PVD+YVP Sbjct: 85 TAGTCFVKMAPLMKHIYDQMLEPKWVISMGSCSNSGGMYDI-YSVVQGVDKILPVDVYVP 143 Query: 158 GCPPTAEALIYGILLLQKKIR 178 GCPP +AL+ G+++LQ+ ++ Sbjct: 144 GCPPRPDALLEGLIMLQEHVQ 164 >gi|323702663|ref|ZP_08114324.1| NADH-quinone oxidoreductase, B subunit [Desulfotomaculum nigrificans DSM 574] gi|323532326|gb|EGB22204.1| NADH-quinone oxidoreductase, B subunit [Desulfotomaculum nigrificans DSM 574] Length = 203 Score = 162 bits (410), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 85/161 (52%), Positives = 117/161 (72%), Gaps = 4/161 (2%) Query: 19 LEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVE-MMQASMPRY 77 L+K+ AD + I E+T K V +++L+ AR SL + FGLACCA+E +M A+M R+ Sbjct: 36 LKKIGADPAVIG-EVT-KTVSVGPLEKLLNLARANSLWPLGFGLACCAIEGLMAANMARF 93 Query: 78 DLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY 136 DL RFG+ RASPRQ+DVMIV GT+T K A + R+Y+QM EP+YVI+MGSCA GG + Sbjct: 94 DLSRFGYEVMRASPRQADVMIVCGTVTKKAAPFVVRLYEQMAEPKYVIAMGSCAISGGPF 153 Query: 137 HYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 SY+VV G D+++PVD+Y+PGCPP +ALI+ L L++KI Sbjct: 154 VDSYAVVPGVDKLIPVDVYLPGCPPRPDALIHAFLKLKEKI 194 >gi|189218226|ref|YP_001938868.1| NADH dehydrogenase subunit B [Methylacidiphilum infernorum V4] gi|238065168|sp|B3DXN5|NUOB_METI4 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|189185084|gb|ACD82269.1| NADH:ubiquinone oxidoreductase 20 kD subunit or related Fe-S oxidoreductase [Methylacidiphilum infernorum V4] Length = 170 Score = 162 bits (410), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 76/147 (51%), Positives = 110/147 (74%), Gaps = 2/147 (1%) Query: 39 LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMI 97 +VT +D + W R SL M GLACCA+E+M ++ R+D+ RFG R SPRQ DVMI Sbjct: 18 VVTRLDAAINWMRKNSLWPMPMGLACCAIELMASACARFDISRFGAEVMRFSPRQCDVMI 77 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGT+T KMA +++R+Y+QMP+P++VISMG+CA+ GG Y SYSV++G D+++PVD+YV Sbjct: 78 VAGTVTYKMAYSVKRIYEQMPDPKWVISMGACASSGGMYR-SYSVLQGIDQLIPVDVYVS 136 Query: 158 GCPPTAEALIYGILLLQKKIRRVGNVK 184 GCPP EAL+ ++ LQ+KI + +++ Sbjct: 137 GCPPRPEALLDALIKLQEKIDKEASLR 163 >gi|42524476|ref|NP_969856.1| NADH dehydrogenase I chain B [Bdellovibrio bacteriovorus HD100] gi|81616434|sp|Q6MIR4|NUOB_BDEBA RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|39576685|emb|CAE80849.1| NADH dehydrogenase I chain B [Bdellovibrio bacteriovorus HD100] Length = 187 Score = 162 bits (410), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 82/172 (47%), Positives = 114/172 (66%), Gaps = 12/172 (6%) Query: 8 QKIISGQSSCSLEKVDADFSRISSEITHKGFLVTS-VDQLVTWARTGSLMWMTFGLACCA 66 Q ++S + VD D SR GF TS +D +V W R SL M +G ACC Sbjct: 7 QGLVSHDGMTGTQAVD-DMSR--------GFAFTSKLDAIVAWGRKNSLWPMPYGTACCG 57 Query: 67 VEMMQASMPRYDLERFGF-APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVIS 125 +E M P+YDL RFG R SPRQ+D+++VAGT+T KMA + R+Y QM EP+YV+S Sbjct: 58 IEFMSVMGPKYDLARFGAEVARFSPRQADLLVVAGTITEKMAPVIVRIYQQMLEPKYVLS 117 Query: 126 MGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 MG+CA+ GG+Y +Y V++G D+++PVD+Y+PGCPPT EA++ GI+ LQ+ I Sbjct: 118 MGACASSGGFYR-AYHVLQGVDKVIPVDVYIPGCPPTPEAVMDGIMALQRMI 168 >gi|261416729|ref|YP_003250412.1| NADH-quinone oxidoreductase, B subunit [Fibrobacter succinogenes subsp. succinogenes S85] gi|261373185|gb|ACX75930.1| NADH-quinone oxidoreductase, B subunit [Fibrobacter succinogenes subsp. succinogenes S85] gi|302325376|gb|ADL24577.1| NADH-quinone oxidoreductase, B/C subunit [Fibrobacter succinogenes subsp. succinogenes S85] Length = 419 Score = 162 bits (410), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 74/152 (48%), Positives = 112/152 (73%), Gaps = 2/152 (1%) Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP- 86 +I I ++V ++D +V WAR S+ +T+G +CCA+EMM +SM RYD+ RFG Sbjct: 9 KILDPIPGGKYVVNAIDYVVNWARANSIWPLTYGTSCCAIEMMSSSMARYDIARFGSEVF 68 Query: 87 RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRG 145 R+SPRQ+D+ I+AGT+T +MA A++ +++Q+P P+YVI+MG+C GG + Y +YSVVRG Sbjct: 69 RSSPRQADLFILAGTITRRMAPAIQMLWEQIPGPKYVIAMGACTISGGPFIYDNYSVVRG 128 Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 ++PVD++VPGCPP EAL +G+L L++KI Sbjct: 129 AQNLIPVDVFVPGCPPRPEALFHGLLTLREKI 160 >gi|118467443|ref|YP_886423.1| NADH dehydrogenase subunit B [Mycobacterium smegmatis str. MC2 155] gi|238065179|sp|A0QU35|NUOB_MYCS2 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|118168730|gb|ABK69626.1| NADH-quinone oxidoreductase, B subunit [Mycobacterium smegmatis str. MC2 155] Length = 184 Score = 162 bits (410), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 75/145 (51%), Positives = 109/145 (75%), Gaps = 2/145 (1%) Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95 G L+++V+ + + R GSL TFGLACCA+EMM + PR+D+ RFG A+PRQ+D+ Sbjct: 10 GILLSTVETVAGYVRKGSLWPATFGLACCAIEMMSTAGPRFDIARFGMERFSATPRQADL 69 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155 MIVAG ++ KMA LR++YDQM EP++V++MG CA+ GG ++ +Y+VV+G D +VPVDIY Sbjct: 70 MIVAGRVSQKMAPVLRQIYDQMVEPKWVLAMGVCASSGGMFN-NYAVVQGVDHVVPVDIY 128 Query: 156 VPGCPPTAEALIYGILLLQKKIRRV 180 +PGCPP E L++ IL L KI+++ Sbjct: 129 LPGCPPRPEMLLHAILKLHDKIQQM 153 >gi|311744393|ref|ZP_07718195.1| NADH-quinone oxidoreductase subunit B [Aeromicrobium marinum DSM 15272] gi|311312359|gb|EFQ82274.1| NADH-quinone oxidoreductase subunit B [Aeromicrobium marinum DSM 15272] Length = 184 Score = 162 bits (409), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 78/149 (52%), Positives = 104/149 (69%), Gaps = 2/149 (1%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RAS 89 E G L+++V+ L + R S TFGLACCA+EMM PRYD RFG R S Sbjct: 4 EEKLPSGVLLSTVEDLAGYFRKASFWPATFGLACCAIEMMTFGAPRYDSSRFGMEVFRPS 63 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQ+D+MIVAG ++NKMA LR++YDQM EP+YV++MG CA+ GG ++ +Y++V+G D + Sbjct: 64 PRQADLMIVAGRVSNKMAPVLRQIYDQMAEPKYVLAMGVCASSGGMFN-NYAIVQGVDHV 122 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIR 178 VPVD+Y+PGCPP E LI IL L KI+ Sbjct: 123 VPVDMYLPGCPPRPEMLIDAILKLHDKIQ 151 >gi|298674246|ref|YP_003725996.1| NADH-quinone oxidoreductase subunit B [Methanohalobium evestigatum Z-7303] gi|298287234|gb|ADI73200.1| NADH-quinone oxidoreductase, B subunit [Methanohalobium evestigatum Z-7303] Length = 189 Score = 162 bits (409), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 71/137 (51%), Positives = 94/137 (68%) Query: 41 TSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAG 100 T V ++ W R SL +MT + CC VEM+ YD +RFG PR SPRQ+DVMI++G Sbjct: 40 TKVQDIINWGRKNSLWFMTQPMGCCGVEMIATGCAHYDTDRFGIIPRNSPRQADVMIISG 99 Query: 101 TLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCP 160 +T K AL++VY+QMP P++VI+MG CA GG ++ SYS V+ D I P+D+Y+PGCP Sbjct: 100 YVTKKYFPALKKVYEQMPSPKWVIAMGDCAISGGPFYESYSTVQNIDEIFPIDVYIPGCP 159 Query: 161 PTAEALIYGILLLQKKI 177 P EALI G + LQKKI Sbjct: 160 PRPEALIQGFVELQKKI 176 >gi|240169669|ref|ZP_04748328.1| NADH dehydrogenase subunit B [Mycobacterium kansasii ATCC 12478] Length = 184 Score = 162 bits (409), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 74/145 (51%), Positives = 109/145 (75%), Gaps = 2/145 (1%) Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95 G L+++V+++ + R SL TFGLACCA+EMM + PR+DL RFG A+PRQ+D+ Sbjct: 10 GILLSTVEKVAGYVRKNSLWPATFGLACCAIEMMATAGPRFDLARFGMERFSATPRQADL 69 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155 MIVAG ++ KMA LR++YDQM EP++V++MG CA+ GG ++ +Y++V+G D +VPVDIY Sbjct: 70 MIVAGRVSQKMAPVLRQIYDQMAEPKWVLAMGVCASSGGMFN-NYAIVQGVDHVVPVDIY 128 Query: 156 VPGCPPTAEALIYGILLLQKKIRRV 180 +PGCPP E L++ IL L +KI+ + Sbjct: 129 LPGCPPRPEMLLHAILKLHEKIQEM 153 >gi|229821708|ref|YP_002883234.1| NADH-quinone oxidoreductase, B subunit [Beutenbergia cavernae DSM 12333] gi|259514655|sp|C5C0S6|NUOB_BEUC1 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|229567621|gb|ACQ81472.1| NADH-quinone oxidoreductase, B subunit [Beutenbergia cavernae DSM 12333] Length = 184 Score = 161 bits (408), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 78/149 (52%), Positives = 105/149 (70%), Gaps = 2/149 (1%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RAS 89 E GF++ V LV R SL +T GLACCA+EMM PR+D+ RFG RAS Sbjct: 4 EEKAPSGFMLAKVSDLVGLIRKSSLWPVTMGLACCAIEMMATGTPRFDISRFGMEVFRAS 63 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQ+D+MIV+G ++ KMA +R+VYDQM EP++V+SMG CA+ GG ++ +Y+VV+G D I Sbjct: 64 PRQADLMIVSGRVSQKMAPVVRQVYDQMSEPKWVLSMGVCASSGGMFN-NYAVVQGVDHI 122 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIR 178 +PVDIY+PGCPP E L+ IL L ++IR Sbjct: 123 LPVDIYLPGCPPRPEMLLNAILELHEQIR 151 >gi|325298883|ref|YP_004258800.1| NAD(P)H-quinone oxidoreductase subunit K [Bacteroides salanitronis DSM 18170] gi|324318436|gb|ADY36327.1| NAD(P)H-quinone oxidoreductase subunit K [Bacteroides salanitronis DSM 18170] Length = 205 Score = 161 bits (408), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 67/143 (46%), Positives = 102/143 (71%), Gaps = 1/143 (0%) Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APRASPRQSDV 95 G ++T+ D+L+ W R+ S+ + G +CCA+E M RYD+ RFGF R SPRQ+DV Sbjct: 33 GVILTTFDELINWGRSNSVWGLLLGTSCCAIEFMALGAARYDMARFGFEVTRNSPRQADV 92 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155 ++V GT+T + A ++R+YDQM EP+YV+++G C GG + SY+VV G D+++PVD+Y Sbjct: 93 LVVMGTITYRTAPVMKRLYDQMAEPKYVVAVGGCTISGGPFIKSYNVVNGIDKVIPVDVY 152 Query: 156 VPGCPPTAEALIYGILLLQKKIR 178 +PGCPP EA YG++ LQ+K++ Sbjct: 153 IPGCPPRPEAFYYGLMQLQRKMK 175 >gi|34501411|ref|NP_904198.1| NADH dehydrogenase subunit K [Physcomitrella patens subsp. patens] gi|75294073|sp|Q6YXQ9|NDHK_PHYPA RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K gi|34494781|dbj|BAC85048.1| NADH dehydrogenase 27 kD subunit [Physcomitrella patens subsp. patens] Length = 261 Score = 161 bits (408), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 71/150 (47%), Positives = 103/150 (68%), Gaps = 1/150 (0%) Query: 29 ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88 S++ ++T+ + WAR SL + +G +CC +E R+D +R+G PR+ Sbjct: 29 FSNQENPNSVILTTFNDFTNWARLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRS 88 Query: 89 SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCD 147 SPRQ+D++I AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D Sbjct: 89 SPRQADLIITAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVD 148 Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 +++PVDIY+PGCPP EA+I I+ L+KKI Sbjct: 149 KLIPVDIYLPGCPPKPEAIIDAIIKLRKKI 178 >gi|75908080|ref|YP_322376.1| NADH dehydrogenase subunit B [Anabaena variabilis ATCC 29413] gi|6685694|sp|Q9XBL7|NDHK_ANAVT RecName: Full=NAD(P)H-quinone oxidoreductase subunit K; AltName: Full=NAD(P)H dehydrogenase I subunit K; AltName: Full=NDH-1 subunit K; Short=NDH-K gi|5139342|emb|CAB45647.1| NDH-K protein [Anabaena variabilis] gi|75701805|gb|ABA21481.1| NADH dehydrogenase subunit B [Anabaena variabilis ATCC 29413] Length = 245 Score = 161 bits (407), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 73/143 (51%), Positives = 101/143 (70%), Gaps = 1/143 (0%) Query: 36 KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDV 95 + ++T+VD L WAR SL + FG ACC +E R+D +RFG PR+SPRQ+D+ Sbjct: 30 ENVILTTVDDLYNWARLSSLWPLLFGTACCFIEFAALIGSRFDFDRFGLIPRSSPRQADL 89 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPVDI 154 +I AGT+T KMA L R+Y+QMPEP+YVI+MG+C GG + S + VRG D+++PVD+ Sbjct: 90 IITAGTITMKMAPQLVRLYEQMPEPKYVIAMGACTITGGMFSVDSPTAVRGVDKLIPVDV 149 Query: 155 YVPGCPPTAEALIYGILLLQKKI 177 Y+PGCPP EA+I I+ L+KKI Sbjct: 150 YLPGCPPRPEAIIDAIIKLRKKI 172 >gi|15610282|ref|NP_217662.1| NADH dehydrogenase subunit B [Mycobacterium tuberculosis H37Rv] gi|15842722|ref|NP_337759.1| NADH dehydrogenase subunit B [Mycobacterium tuberculosis CDC1551] gi|31794322|ref|NP_856815.1| NADH dehydrogenase subunit B [Mycobacterium bovis AF2122/97] gi|121639029|ref|YP_979253.1| NADH dehydrogenase subunit B [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148663001|ref|YP_001284524.1| NADH dehydrogenase subunit B [Mycobacterium tuberculosis H37Ra] gi|148824340|ref|YP_001289094.1| NADH dehydrogenase subunit B [Mycobacterium tuberculosis F11] gi|167970182|ref|ZP_02552459.1| NADH dehydrogenase subunit B [Mycobacterium tuberculosis H37Ra] gi|215405144|ref|ZP_03417325.1| NADH dehydrogenase subunit B [Mycobacterium tuberculosis 02_1987] gi|215432105|ref|ZP_03430024.1| NADH dehydrogenase subunit B [Mycobacterium tuberculosis EAS054] gi|215447436|ref|ZP_03434188.1| NADH dehydrogenase subunit B [Mycobacterium tuberculosis T85] gi|218754926|ref|ZP_03533722.1| NADH dehydrogenase subunit B [Mycobacterium tuberculosis GM 1503] gi|219559192|ref|ZP_03538268.1| NADH dehydrogenase subunit B [Mycobacterium tuberculosis T17] gi|224991521|ref|YP_002646210.1| NADH dehydrogenase subunit B [Mycobacterium bovis BCG str. Tokyo 172] gi|253800180|ref|YP_003033181.1| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis KZN 1435] gi|254233766|ref|ZP_04927091.1| NADH dehydrogenase I (chain B) nuoB (NADH-ubiquinone oxidoreductase chain B) [Mycobacterium tuberculosis C] gi|254365771|ref|ZP_04981816.1| NADH dehydrogenase I (chain B) nuoB (NADH-ubiquinone oxidoreductase chain B) [Mycobacterium tuberculosis str. Haarlem] gi|254552237|ref|ZP_05142684.1| NADH dehydrogenase subunit B [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260188187|ref|ZP_05765661.1| NADH dehydrogenase subunit B [Mycobacterium tuberculosis CPHL_A] gi|260202292|ref|ZP_05769783.1| NADH dehydrogenase subunit B [Mycobacterium tuberculosis T46] gi|260206485|ref|ZP_05773976.1| NADH dehydrogenase subunit B [Mycobacterium tuberculosis K85] gi|289444710|ref|ZP_06434454.1| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis T46] gi|289448826|ref|ZP_06438570.1| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis CPHL_A] gi|289555419|ref|ZP_06444629.1| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis KZN 605] gi|289571357|ref|ZP_06451584.1| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis T17] gi|289575858|ref|ZP_06456085.1| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis K85] gi|289746955|ref|ZP_06506333.1| NADH dehydrogenase subunit beta [Mycobacterium tuberculosis 02_1987] gi|289755265|ref|ZP_06514643.1| NADH dehydrogenase subunit B [Mycobacterium tuberculosis EAS054] gi|289759276|ref|ZP_06518654.1| NADH dehydrogenase subunit B [Mycobacterium tuberculosis T85] gi|289763329|ref|ZP_06522707.1| NADH dehydrogenase I (chain B) nuoB (NADH-ubiquinone oxidoreductase chain B) [Mycobacterium tuberculosis GM 1503] gi|294993125|ref|ZP_06798816.1| NADH dehydrogenase subunit B [Mycobacterium tuberculosis 210] gi|297635789|ref|ZP_06953569.1| NADH dehydrogenase subunit B [Mycobacterium tuberculosis KZN 4207] gi|297732786|ref|ZP_06961904.1| NADH dehydrogenase subunit B [Mycobacterium tuberculosis KZN R506] gi|306794900|ref|ZP_07433202.1| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis SUMu005] gi|306973581|ref|ZP_07486242.1| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis SUMu010] gi|307085892|ref|ZP_07495005.1| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis SUMu012] gi|313660119|ref|ZP_07816999.1| NADH dehydrogenase subunit B [Mycobacterium tuberculosis KZN V2475] gi|54037922|sp|P65576|NUOB_MYCBO RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|54041673|sp|P65575|NUOB_MYCTU RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|238065176|sp|A1KNE2|NUOB_MYCBP RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|238065181|sp|A5U7G2|NUOB_MYCTA RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|254767796|sp|C1AGR3|NUOB_MYCBT RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|1781222|emb|CAB06270.1| PROBABLE NADH DEHYDROGENASE I (CHAIN B) NUOB (NADH-UBIQUINONE OXIDOREDUCTASE CHAIN B) [Mycobacterium tuberculosis H37Rv] gi|13883044|gb|AAK47573.1| NADH dehydrogenase I, B subunit [Mycobacterium tuberculosis CDC1551] gi|31619918|emb|CAD95262.1| PROBABLE NADH DEHYDROGENASE I (CHAIN B) NUOB (NADH-UBIQUINONE OXIDOREDUCTASE CHAIN B) [Mycobacterium bovis AF2122/97] gi|121494677|emb|CAL73158.1| Probable NADH dehydrogenase I (chain B) nuoB [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|124599295|gb|EAY58399.1| NADH dehydrogenase I (chain B) nuoB (NADH-ubiquinone oxidoreductase chain B) [Mycobacterium tuberculosis C] gi|134151284|gb|EBA43329.1| NADH dehydrogenase I (chain B) nuoB (NADH-ubiquinone oxidoreductase chain B) [Mycobacterium tuberculosis str. Haarlem] gi|148507153|gb|ABQ74962.1| NADH dehydrogenase subunit beta [Mycobacterium tuberculosis H37Ra] gi|148722867|gb|ABR07492.1| NADH dehydrogenase I chain B nuoB (NADH-ubiquinone oxidoreductase chain B) [Mycobacterium tuberculosis F11] gi|224774636|dbj|BAH27442.1| NADH dehydrogenase subunit B [Mycobacterium bovis BCG str. Tokyo 172] gi|253321683|gb|ACT26286.1| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis KZN 1435] gi|289417629|gb|EFD14869.1| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis T46] gi|289421784|gb|EFD18985.1| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis CPHL_A] gi|289440051|gb|EFD22544.1| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis KZN 605] gi|289540289|gb|EFD44867.1| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis K85] gi|289545111|gb|EFD48759.1| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis T17] gi|289687483|gb|EFD54971.1| NADH dehydrogenase subunit beta [Mycobacterium tuberculosis 02_1987] gi|289695852|gb|EFD63281.1| NADH dehydrogenase subunit B [Mycobacterium tuberculosis EAS054] gi|289710835|gb|EFD74851.1| NADH dehydrogenase I (chain B) nuoB (NADH-ubiquinone oxidoreductase chain B) [Mycobacterium tuberculosis GM 1503] gi|289714840|gb|EFD78852.1| NADH dehydrogenase subunit B [Mycobacterium tuberculosis T85] gi|308336686|gb|EFP25537.1| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis SUMu005] gi|308357065|gb|EFP45916.1| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis SUMu010] gi|308364627|gb|EFP53478.1| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis SUMu012] gi|323718234|gb|EGB27414.1| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis CDC1551A] gi|326902630|gb|EGE49563.1| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis W-148] gi|328459917|gb|AEB05340.1| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis KZN 4207] Length = 184 Score = 161 bits (407), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 73/145 (50%), Positives = 110/145 (75%), Gaps = 2/145 (1%) Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95 G L+++V+++ + R SL TFGLACCA+EMM + PR+D+ RFG A+PRQ+D+ Sbjct: 10 GILLSTVEKVAGYVRKNSLWPATFGLACCAIEMMATAGPRFDIARFGMERFSATPRQADL 69 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155 MIVAG ++ KMA LR++YDQM EP++V++MG CA+ GG ++ +Y++V+G D +VPVDIY Sbjct: 70 MIVAGRVSQKMAPVLRQIYDQMAEPKWVLAMGVCASSGGMFN-NYAIVQGVDHVVPVDIY 128 Query: 156 VPGCPPTAEALIYGILLLQKKIRRV 180 +PGCPP E L++ IL L +KI+++ Sbjct: 129 LPGCPPRPEMLLHAILKLHEKIQQM 153 >gi|124024214|ref|YP_001018521.1| NADH dehydrogenase subunit B [Prochlorococcus marinus str. MIT 9303] gi|218527919|sp|A2CCP6|NDHK_PROM3 RecName: Full=NAD(P)H-quinone oxidoreductase subunit K; AltName: Full=NAD(P)H dehydrogenase I subunit K; AltName: Full=NDH-1 subunit K; Short=NDH-K gi|123964500|gb|ABM79256.1| putative respiratory-chain NADH dehydrogenase subunit [Prochlorococcus marinus str. MIT 9303] Length = 250 Score = 161 bits (407), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 73/150 (48%), Positives = 108/150 (72%), Gaps = 2/150 (1%) Query: 29 ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88 ++SE++ + ++TS+D L WAR SL + +G ACC +E R+D +RFG PR+ Sbjct: 26 VTSELS-ENIILTSLDDLHNWARLSSLWPLLYGTACCFIEFAALIGSRFDFDRFGLVPRS 84 Query: 89 SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCD 147 SPRQ+D++IVAGT+T KMA AL R+Y+QMPEP+YVI+MG+C GG + S + VRG D Sbjct: 85 SPRQADLLIVAGTVTMKMAPALVRLYEQMPEPKYVIAMGACTITGGMFSADSTTAVRGVD 144 Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 +++PVD+Y+PGCPP EA+ ++ L+KK+ Sbjct: 145 KLIPVDLYLPGCPPRPEAIFDAVIKLRKKV 174 >gi|215413013|ref|ZP_03421714.1| NADH dehydrogenase subunit B [Mycobacterium tuberculosis 94_M4241A] gi|298526620|ref|ZP_07014029.1| NADH dehydrogenase I, B subunit [Mycobacterium tuberculosis 94_M4241A] gi|298496414|gb|EFI31708.1| NADH dehydrogenase I, B subunit [Mycobacterium tuberculosis 94_M4241A] Length = 184 Score = 161 bits (407), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 73/145 (50%), Positives = 110/145 (75%), Gaps = 2/145 (1%) Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95 G L+++V+++ + R SL TFGLACCA+EMM + PR+D+ RFG A+PRQ+D+ Sbjct: 10 GILLSNVEKVAGYVRKNSLWPATFGLACCAIEMMATAGPRFDIARFGMERFSATPRQADL 69 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155 MIVAG ++ KMA LR++YDQM EP++V++MG CA+ GG ++ +Y++V+G D +VPVDIY Sbjct: 70 MIVAGRVSQKMAPVLRQIYDQMAEPKWVLAMGVCASSGGMFN-NYAIVQGVDHVVPVDIY 128 Query: 156 VPGCPPTAEALIYGILLLQKKIRRV 180 +PGCPP E L++ IL L +KI+++ Sbjct: 129 LPGCPPRPEMLLHAILKLHEKIQQM 153 >gi|119511864|ref|ZP_01630964.1| NADH dehydrogenase beta subunit [Nodularia spumigena CCY9414] gi|119463506|gb|EAW44443.1| NADH dehydrogenase beta subunit [Nodularia spumigena CCY9414] Length = 246 Score = 161 bits (407), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 73/143 (51%), Positives = 101/143 (70%), Gaps = 1/143 (0%) Query: 36 KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDV 95 + ++T+VD L WAR SL + FG ACC +E R+D +RFG PR+SPRQ+D+ Sbjct: 30 ENVILTTVDDLYNWARLSSLWPLLFGTACCFIEFAALIGSRFDFDRFGLIPRSSPRQADL 89 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPVDI 154 +I AGT+T KMA L R+Y+QMPEP+YVI+MG+C GG + S + VRG D+++PVD+ Sbjct: 90 IITAGTITMKMAPQLVRLYEQMPEPKYVIAMGACTITGGMFSMDSPTAVRGVDKLIPVDV 149 Query: 155 YVPGCPPTAEALIYGILLLQKKI 177 Y+PGCPP EA+I I+ L+KKI Sbjct: 150 YLPGCPPRPEAIIDAIIKLRKKI 172 >gi|223931071|ref|YP_002586932.1| NADH-plastoquinone oxidoreductase subunit K [Syntrichia ruralis] gi|219562285|gb|ACL27616.1| NADH-plastoquinone oxidoreductase subunit K [Syntrichia ruralis] Length = 249 Score = 161 bits (407), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 70/150 (46%), Positives = 104/150 (69%), Gaps = 1/150 (0%) Query: 29 ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88 +S++ ++T+ + WAR SL + +G +CC +E R+D +R+G PR+ Sbjct: 25 LSNQKNPNSIILTTFNDFSNWARLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRS 84 Query: 89 SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCD 147 SPRQ+D++I AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D Sbjct: 85 SPRQADLIITAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVD 144 Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 +++PVDIY+PGCPP EA+I I+ L+KK+ Sbjct: 145 KLIPVDIYLPGCPPKPEAIIDAIIKLRKKV 174 >gi|17231333|ref|NP_487881.1| NADH dehydrogenase subunit B [Nostoc sp. PCC 7120] gi|20141594|sp|Q44240|NDHK_ANASP RecName: Full=NAD(P)H-quinone oxidoreductase subunit K; AltName: Full=NAD(P)H dehydrogenase I subunit K; AltName: Full=NDH-1 subunit K; Short=NDH-K gi|17132975|dbj|BAB75540.1| NADH dehydrogenase chain K [Nostoc sp. PCC 7120] Length = 245 Score = 161 bits (407), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 73/143 (51%), Positives = 101/143 (70%), Gaps = 1/143 (0%) Query: 36 KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDV 95 + ++T+VD L WAR SL + FG ACC +E R+D +RFG PR+SPRQ+D+ Sbjct: 30 ENVILTTVDDLYNWARLSSLWPLLFGTACCFIEFAALIGSRFDFDRFGLIPRSSPRQADL 89 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPVDI 154 +I AGT+T KMA L R+Y+QMPEP+YVI+MG+C GG + S + VRG D+++PVD+ Sbjct: 90 IITAGTITMKMAPQLVRLYEQMPEPKYVIAMGACTITGGMFSVDSPTAVRGVDKLIPVDV 149 Query: 155 YVPGCPPTAEALIYGILLLQKKI 177 Y+PGCPP EA+I I+ L+KKI Sbjct: 150 YLPGCPPRPEAIIDAIIKLRKKI 172 >gi|186685599|ref|YP_001868795.1| NADH dehydrogenase subunit B [Nostoc punctiforme PCC 73102] gi|218527915|sp|B2J6S6|NDHK_NOSP7 RecName: Full=NAD(P)H-quinone oxidoreductase subunit K; AltName: Full=NAD(P)H dehydrogenase I subunit K; AltName: Full=NDH-1 subunit K; Short=NDH-K gi|186468051|gb|ACC83852.1| NADH-quinone oxidoreductase, B subunit [Nostoc punctiforme PCC 73102] Length = 245 Score = 161 bits (407), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 73/143 (51%), Positives = 101/143 (70%), Gaps = 1/143 (0%) Query: 36 KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDV 95 + ++T+VD L WAR SL + FG ACC +E R+D +RFG PR+SPRQ+D+ Sbjct: 30 ENVILTTVDDLYDWARLSSLWPLLFGTACCFIEFAALIGSRFDFDRFGLIPRSSPRQADL 89 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPVDI 154 +I AGT+T KMA L R+Y+QMPEP+YVI+MG+C GG + S + VRG D+++PVD+ Sbjct: 90 IITAGTITMKMAPQLVRLYEQMPEPKYVIAMGACTITGGMFSVDSPTAVRGVDKLIPVDV 149 Query: 155 YVPGCPPTAEALIYGILLLQKKI 177 Y+PGCPP EA+I I+ L+KKI Sbjct: 150 YLPGCPPRPEAIIDAIIKLRKKI 172 >gi|123965561|ref|YP_001010642.1| NADH dehydrogenase subunit B [Prochlorococcus marinus str. MIT 9515] gi|218527921|sp|A2BUS4|NDHK_PROM5 RecName: Full=NAD(P)H-quinone oxidoreductase subunit K; AltName: Full=NAD(P)H dehydrogenase I subunit K; AltName: Full=NDH-1 subunit K; Short=NDH-K gi|123199927|gb|ABM71535.1| putative respiratory-chain NADH dehydrogenase subunit [Prochlorococcus marinus str. MIT 9515] Length = 244 Score = 161 bits (407), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 74/148 (50%), Positives = 104/148 (70%), Gaps = 4/148 (2%) Query: 36 KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDV 95 + ++TS+D L WAR SL + +G ACC +E R+D +RFG PR+SPRQ+D+ Sbjct: 32 ENIIMTSLDDLHNWARLSSLWPLLYGTACCFIEFAALIGSRFDFDRFGLVPRSSPRQADL 91 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPVDI 154 +IVAGT+T KMA AL R+Y+QMPEP+YVI+MG+C GG + S + VRG D+++PVD+ Sbjct: 92 LIVAGTVTMKMAPALVRLYEQMPEPKYVIAMGACTITGGMFSADSTTAVRGVDKLIPVDL 151 Query: 155 YVPGCPPTAEALIYGILLLQKKIRRVGN 182 Y+PGCPP EA+ ++ L+KK VGN Sbjct: 152 YLPGCPPRPEAIFDAVIKLRKK---VGN 176 >gi|218527891|sp|A2CI36|NDHK_CHLAT RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K Length = 274 Score = 161 bits (407), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 72/162 (44%), Positives = 109/162 (67%), Gaps = 4/162 (2%) Query: 20 EKVDADFSRISSEITH---KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPR 76 E + S + ++T ++T+++ L WAR SL + +G +CC +E R Sbjct: 43 ETSGKELSEATPQVTQSLSNQLILTTLNDLYNWARLSSLWPLLYGTSCCFIEFASLLGSR 102 Query: 77 YDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY 136 +D +RFG PR+SPRQ+D++I AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + Sbjct: 103 FDFDRFGLVPRSSPRQADLIITAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMF 162 Query: 137 HY-SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 SYS VRG D+++PVD+Y+PGCPP EA+I ++ L+KK+ Sbjct: 163 STDSYSTVRGVDKLIPVDVYLPGCPPKPEAIIDAVIKLRKKV 204 >gi|88808082|ref|ZP_01123593.1| NADH dehydrogenase beta subunit [Synechococcus sp. WH 7805] gi|88788121|gb|EAR19277.1| NADH dehydrogenase beta subunit [Synechococcus sp. WH 7805] Length = 248 Score = 161 bits (407), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 75/165 (45%), Positives = 111/165 (67%), Gaps = 1/165 (0%) Query: 14 QSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQAS 73 ++SC AD + ++ + ++TS+D L WAR SL + +G ACC +E Sbjct: 16 EASCGPVAGAADGAPTVTQDLSENVILTSLDDLHNWARLSSLWPLLYGTACCFIEFAALL 75 Query: 74 MPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGG 133 R+D +RFG PR+SPRQ+D++IVAGT+T KMA AL R+Y+QMPEP+YVI+MG+C G Sbjct: 76 GSRFDFDRFGLVPRSSPRQADLLIVAGTVTMKMAPALVRLYEQMPEPKYVIAMGACTITG 135 Query: 134 GYYHY-SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 G + S + VRG D+++PVD+Y+PGCPP EA+ ++ L+KK+ Sbjct: 136 GMFSADSTTAVRGVDKLIPVDLYMPGCPPRPEAIFDAVIKLRKKV 180 >gi|254526480|ref|ZP_05138532.1| NADH dehydrogenase i chain b or ndhk [Prochlorococcus marinus str. MIT 9202] gi|221537904|gb|EEE40357.1| NADH dehydrogenase i chain b or ndhk [Prochlorococcus marinus str. MIT 9202] Length = 241 Score = 161 bits (407), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 71/143 (49%), Positives = 102/143 (71%), Gaps = 1/143 (0%) Query: 36 KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDV 95 + ++TS+D L WAR SL + +G ACC +E R+D +RFG PR+SPRQ+D+ Sbjct: 32 ENIILTSLDDLHNWARLSSLWPLLYGTACCFIEFAALIGSRFDFDRFGLVPRSSPRQADL 91 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPVDI 154 +IVAGT+T KMA AL R+Y+QMPEP+YVI+MG+C GG + S + VRG D+++PVD+ Sbjct: 92 LIVAGTVTMKMAPALVRLYEQMPEPKYVIAMGACTITGGMFSADSTTAVRGVDKLIPVDL 151 Query: 155 YVPGCPPTAEALIYGILLLQKKI 177 Y+PGCPP EA+ ++ L+KK+ Sbjct: 152 YLPGCPPRPEAIFDAVIKLRKKV 174 >gi|33860851|ref|NP_892412.1| NADH dehydrogenase subunit B [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|81576412|sp|Q7V303|NDHK_PROMP RecName: Full=NAD(P)H-quinone oxidoreductase subunit K; AltName: Full=NAD(P)H dehydrogenase I subunit K; AltName: Full=NDH-1 subunit K; Short=NDH-K gi|33633793|emb|CAE18752.1| putative respiratory-chain NADH dehydrogenase subunit [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 244 Score = 161 bits (407), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 71/143 (49%), Positives = 102/143 (71%), Gaps = 1/143 (0%) Query: 36 KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDV 95 + ++TS+D L WAR SL + +G ACC +E R+D +RFG PR+SPRQ+D+ Sbjct: 32 ENIIMTSLDDLHNWARLSSLWPLLYGTACCFIEFAALIGSRFDFDRFGLVPRSSPRQADL 91 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPVDI 154 +IVAGT+T KMA AL R+Y+QMPEP+YVI+MG+C GG + S + VRG D+++PVD+ Sbjct: 92 LIVAGTVTMKMAPALVRLYEQMPEPKYVIAMGACTITGGMFSADSTTAVRGVDKLIPVDL 151 Query: 155 YVPGCPPTAEALIYGILLLQKKI 177 Y+PGCPP EA+ ++ L+KK+ Sbjct: 152 YLPGCPPRPEAIFDAVIKLRKKV 174 >gi|11466706|ref|NP_039302.1| NADH dehydrogenase subunit K [Marchantia polymorpha] gi|131322|sp|P06410|NDHK_MARPO RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K gi|11676|emb|CAA28088.1| psbG [Marchantia polymorpha] Length = 243 Score = 161 bits (407), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 74/165 (44%), Positives = 112/165 (67%), Gaps = 2/165 (1%) Query: 14 QSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQAS 73 +S ++ K + S I+ +T+ ++T+ + WAR SL + +G +CC +E Sbjct: 16 DNSTTMLKNSIESSFINKTLTN-SIILTTFNDFSNWARLSSLWPLLYGTSCCFIEFASLI 74 Query: 74 MPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGG 133 R+D +R+G PR+SPRQ+D++I AGT+T KMA +L R+Y+QMPEP+YVI+MG+C G Sbjct: 75 GSRFDFDRYGLVPRSSPRQADLIITAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITG 134 Query: 134 GYYHY-SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 G + SY+ VRG D+++PVDIY+PGCPP EA+I I+ L+KKI Sbjct: 135 GMFSTDSYTTVRGVDKLIPVDIYLPGCPPKPEAIIDAIIKLRKKI 179 >gi|118617947|ref|YP_906279.1| NADH dehydrogenase subunit B [Mycobacterium ulcerans Agy99] gi|183981497|ref|YP_001849788.1| NADH dehydrogenase I (chain B) NuoB (NADH- ubiquinone oxidoreductase chain B) [Mycobacterium marinum M] gi|238065178|sp|B2HGE7|NUOB_MYCMM RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|238065182|sp|A0PR39|NUOB_MYCUA RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|118570057|gb|ABL04808.1| NADH dehydrogenase I (chain B) NuoB (NADH- ubiquinone oxidoreductase chain B) [Mycobacterium ulcerans Agy99] gi|183174823|gb|ACC39933.1| NADH dehydrogenase I (chain B) NuoB (NADH- ubiquinone oxidoreductase chain B) [Mycobacterium marinum M] Length = 184 Score = 161 bits (407), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 73/145 (50%), Positives = 109/145 (75%), Gaps = 2/145 (1%) Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95 G L+++V+++ + R SL TFGLACCA+EMM + PR+D+ RFG A+PRQ+D+ Sbjct: 10 GILLSTVEKVAGYVRKNSLWPATFGLACCAIEMMATAGPRFDIARFGMERFSATPRQADL 69 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155 MIVAG ++ KMA LR++YDQM EP++V++MG CA+ GG ++ +Y++V+G D +VPVDIY Sbjct: 70 MIVAGRVSQKMAPVLRQIYDQMAEPKWVLAMGVCASSGGMFN-NYAIVQGVDHVVPVDIY 128 Query: 156 VPGCPPTAEALIYGILLLQKKIRRV 180 +PGCPP E L++ IL L +KI+ + Sbjct: 129 LPGCPPRPEMLLHAILKLHEKIQEM 153 >gi|157412655|ref|YP_001483521.1| NADH dehydrogenase subunit B [Prochlorococcus marinus str. MIT 9215] gi|218527918|sp|A8G2V4|NDHK_PROM2 RecName: Full=NAD(P)H-quinone oxidoreductase subunit K; AltName: Full=NAD(P)H dehydrogenase I subunit K; AltName: Full=NDH-1 subunit K; Short=NDH-K gi|157387230|gb|ABV49935.1| putative respiratory-chain NADH dehydrogenase subunit [Prochlorococcus marinus str. MIT 9215] Length = 241 Score = 160 bits (406), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 74/148 (50%), Positives = 104/148 (70%), Gaps = 4/148 (2%) Query: 36 KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDV 95 + ++TS+D L WAR SL + +G ACC +E R+D +RFG PR+SPRQ+D+ Sbjct: 32 ENIILTSLDDLHNWARLSSLWPLLYGTACCFIEFAALIGSRFDFDRFGLVPRSSPRQADL 91 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPVDI 154 +IVAGT+T KMA AL R+Y+QMPEP+YVI+MG+C GG + S + VRG D+++PVD+ Sbjct: 92 LIVAGTVTMKMAPALVRLYEQMPEPKYVIAMGACTITGGMFSADSTTAVRGVDKLIPVDL 151 Query: 155 YVPGCPPTAEALIYGILLLQKKIRRVGN 182 Y+PGCPP EA+ ++ L+KK VGN Sbjct: 152 YLPGCPPRPEAIFDAVIKLRKK---VGN 176 >gi|124112067|ref|YP_001019118.1| 27 kDa subunit of NADH-ubiquinone oxidoreductase [Chlorokybus atmophyticus] gi|124012183|gb|ABM87958.1| 27 kDa subunit of NADH-ubiquinone oxidoreductase [Chlorokybus atmophyticus] Length = 281 Score = 160 bits (406), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 72/162 (44%), Positives = 109/162 (67%), Gaps = 4/162 (2%) Query: 20 EKVDADFSRISSEITH---KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPR 76 E + S + ++T ++T+++ L WAR SL + +G +CC +E R Sbjct: 50 ETSGKELSEATPQVTQSLSNQLILTTLNDLYNWARLSSLWPLLYGTSCCFIEFASLLGSR 109 Query: 77 YDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY 136 +D +RFG PR+SPRQ+D++I AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + Sbjct: 110 FDFDRFGLVPRSSPRQADLIITAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMF 169 Query: 137 HY-SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 SYS VRG D+++PVD+Y+PGCPP EA+I ++ L+KK+ Sbjct: 170 STDSYSTVRGVDKLIPVDVYLPGCPPKPEAIIDAVIKLRKKV 211 >gi|148238589|ref|YP_001223976.1| NADH dehydrogenase subunit B [Synechococcus sp. WH 7803] gi|218527932|sp|A5GIB4|NDHK_SYNPW RecName: Full=NAD(P)H-quinone oxidoreductase subunit K; AltName: Full=NAD(P)H dehydrogenase I subunit K; AltName: Full=NDH-1 subunit K; Short=NDH-K gi|147847128|emb|CAK22679.1| NAD(P)H-quinone oxidoreductase subunit K [Synechococcus sp. WH 7803] Length = 248 Score = 160 bits (406), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 75/165 (45%), Positives = 111/165 (67%), Gaps = 1/165 (0%) Query: 14 QSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQAS 73 ++SC AD + ++ + ++TS+D L WAR SL + +G ACC +E Sbjct: 16 EASCGPVAGAADGAPTVTQDLSENVILTSLDDLHNWARLSSLWPLLYGTACCFIEFAALL 75 Query: 74 MPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGG 133 R+D +RFG PR+SPRQ+D++IVAGT+T KMA AL R+Y+QMPEP+YVI+MG+C G Sbjct: 76 GSRFDFDRFGLVPRSSPRQADLLIVAGTVTMKMAPALVRLYEQMPEPKYVIAMGACTITG 135 Query: 134 GYYHY-SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 G + S + VRG D+++PVD+Y+PGCPP EA+ ++ L+KK+ Sbjct: 136 GMFSADSTTAVRGVDKLIPVDLYMPGCPPRPEAIFDAVIKLRKKV 180 >gi|269218338|ref|ZP_06162192.1| NADH-quinone oxidoreductase, B subunit [Actinomyces sp. oral taxon 848 str. F0332] gi|269212197|gb|EEZ78537.1| NADH-quinone oxidoreductase, B subunit [Actinomyces sp. oral taxon 848 str. F0332] Length = 199 Score = 160 bits (406), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 73/145 (50%), Positives = 107/145 (73%), Gaps = 2/145 (1%) Query: 36 KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSD 94 +G +TSV+ + WA T S +T GLACCA+EMM PR+D RFG RASPRQ+D Sbjct: 22 QGVFLTSVEAVANWAVTNSQWPVTMGLACCAIEMMSFGTPRFDAARFGMEVFRASPRQAD 81 Query: 95 VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154 +MIV+G +++KMA +R +YD+M +P++V+SMG CA+ GG ++ +Y++V+GCD IVPVD+ Sbjct: 82 LMIVSGRVSHKMAPVVRDIYDKMTDPKWVVSMGVCASSGGMFN-NYAIVQGCDHIVPVDV 140 Query: 155 YVPGCPPTAEALIYGILLLQKKIRR 179 Y+PGCPP E LI +L L++ ++R Sbjct: 141 YLPGCPPRPEMLINAVLELREHVKR 165 >gi|170079340|ref|YP_001735978.1| NADH dehydrogenase subunit B [Synechococcus sp. PCC 7002] gi|218527931|sp|B1XMK4|NDHK_SYNP2 RecName: Full=NAD(P)H-quinone oxidoreductase subunit K; AltName: Full=NAD(P)H dehydrogenase I subunit K; AltName: Full=NDH-1 subunit K; Short=NDH-K gi|169887009|gb|ACB00723.1| NADH dehydrogenase subunit K [Synechococcus sp. PCC 7002] Length = 243 Score = 160 bits (406), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 72/152 (47%), Positives = 110/152 (72%), Gaps = 2/152 (1%) Query: 27 SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP 86 S+++ +++ + ++T+VD L WAR SL + +G ACC +E R+D +RFG P Sbjct: 23 SQVTQDLS-ENVILTTVDDLYNWARLSSLWPLLYGTACCFIEFAALLGSRFDFDRFGLVP 81 Query: 87 RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCA-NGGGYYHYSYSVVRG 145 R+SPRQ+D+++VAGT+T KMA AL R+Y++MPEP+YVI+MG+C GG + S + VRG Sbjct: 82 RSSPRQADLILVAGTVTMKMAPALVRLYEEMPEPKYVIAMGACTITGGMFSSDSTTAVRG 141 Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 D+++PVD+Y+PGCPP EA+I I+ L+KK+ Sbjct: 142 VDKLIPVDLYIPGCPPRPEAIIDAIIKLRKKV 173 >gi|123967853|ref|YP_001008711.1| NADH dehydrogenase subunit B [Prochlorococcus marinus str. AS9601] gi|218527922|sp|A2BP93|NDHK_PROMS RecName: Full=NAD(P)H-quinone oxidoreductase subunit K; AltName: Full=NAD(P)H dehydrogenase I subunit K; AltName: Full=NDH-1 subunit K; Short=NDH-K gi|123197963|gb|ABM69604.1| putative respiratory-chain NADH dehydrogenase subunit [Prochlorococcus marinus str. AS9601] Length = 244 Score = 160 bits (406), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 71/143 (49%), Positives = 102/143 (71%), Gaps = 1/143 (0%) Query: 36 KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDV 95 + ++TS+D L WAR SL + +G ACC +E R+D +RFG PR+SPRQ+D+ Sbjct: 32 ENIILTSLDDLHNWARLSSLWPLLYGTACCFIEFAALIGSRFDFDRFGLVPRSSPRQADL 91 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPVDI 154 +IVAGT+T KMA AL R+Y+QMPEP+YVI+MG+C GG + S + VRG D+++PVD+ Sbjct: 92 LIVAGTVTMKMAPALVRLYEQMPEPKYVIAMGACTITGGMFSADSTTAVRGVDKLIPVDL 151 Query: 155 YVPGCPPTAEALIYGILLLQKKI 177 Y+PGCPP EA+ ++ L+KK+ Sbjct: 152 YLPGCPPRPEAIFDAVIKLRKKV 174 >gi|330850634|ref|YP_004376515.1| NADH-plastoquinone oxidoreductase subunit K [Ptilidium pulcherrimum] gi|302024763|gb|ADK89609.1| NADH-plastoquinone oxidoreductase subunit K [Ptilidium pulcherrimum] Length = 250 Score = 160 bits (406), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 73/156 (46%), Positives = 106/156 (67%), Gaps = 2/156 (1%) Query: 23 DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82 D +FS + +T ++T+ + WAR SL + +G +CC +E R+D +R+ Sbjct: 25 DIEFSLFNKTVTD-SIILTTFNDFSNWARLSSLWPLLYGTSCCFIEFASLIGSRFDFDRY 83 Query: 83 GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYS 141 G PR+SPRQ+D++I AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SY+ Sbjct: 84 GLVPRSSPRQADLIITAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYT 143 Query: 142 VVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 VRG D+++PVDIY+PGCPP EA+I I L+KKI Sbjct: 144 TVRGVDKLIPVDIYLPGCPPKPEAIIDAITKLRKKI 179 >gi|298490489|ref|YP_003720666.1| NADH-quinone oxidoreductase subunit B ['Nostoc azollae' 0708] gi|298232407|gb|ADI63543.1| NADH-quinone oxidoreductase, B subunit ['Nostoc azollae' 0708] Length = 244 Score = 160 bits (406), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 73/143 (51%), Positives = 101/143 (70%), Gaps = 1/143 (0%) Query: 36 KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDV 95 + ++T+VD L WAR SL + FG ACC +E R+D +RFG PR+SPRQ+D+ Sbjct: 30 ENVILTTVDDLYNWARLSSLWPLLFGTACCFIEFAALIGSRFDFDRFGLIPRSSPRQADL 89 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPVDI 154 +I AGT+T KMA L R+Y+QMPEP+YVI+MG+C GG + S + VRG D+++PVD+ Sbjct: 90 IITAGTITMKMAPQLVRLYEQMPEPKYVIAMGACTITGGMFSVDSPTAVRGVDKLIPVDV 149 Query: 155 YVPGCPPTAEALIYGILLLQKKI 177 Y+PGCPP EA+I I+ L+KKI Sbjct: 150 YLPGCPPRPEAIIDAIIKLRKKI 172 >gi|91069905|gb|ABE10834.1| putative respiratory-chain NADH dehydrogenase subunit [uncultured Prochlorococcus marinus clone ASNC2150] Length = 244 Score = 160 bits (406), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 74/148 (50%), Positives = 104/148 (70%), Gaps = 4/148 (2%) Query: 36 KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDV 95 + ++TS+D L WAR SL + +G ACC +E R+D +RFG PR+SPRQ+D+ Sbjct: 32 ENIILTSLDDLHNWARLSSLWPLLYGTACCFIEFAALIGSRFDFDRFGLVPRSSPRQADL 91 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPVDI 154 +IVAGT+T KMA AL R+Y+QMPEP+YVI+MG+C GG + S + VRG D+++PVD+ Sbjct: 92 LIVAGTVTMKMAPALVRLYEQMPEPKYVIAMGACTITGGMFSADSTTAVRGVDKLIPVDL 151 Query: 155 YVPGCPPTAEALIYGILLLQKKIRRVGN 182 Y+PGCPP EA+ ++ L+KK VGN Sbjct: 152 YLPGCPPRPEAIFDAVIKLRKK---VGN 176 >gi|126695655|ref|YP_001090541.1| NADH dehydrogenase subunit B [Prochlorococcus marinus str. MIT 9301] gi|218527916|sp|A3PB15|NDHK_PROM0 RecName: Full=NAD(P)H-quinone oxidoreductase subunit K; AltName: Full=NAD(P)H dehydrogenase I subunit K; AltName: Full=NDH-1 subunit K; Short=NDH-K gi|126542698|gb|ABO16940.1| putative respiratory-chain NADH dehydrogenase subunit [Prochlorococcus marinus str. MIT 9301] Length = 244 Score = 160 bits (406), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 71/143 (49%), Positives = 102/143 (71%), Gaps = 1/143 (0%) Query: 36 KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDV 95 + ++TS+D L WAR SL + +G ACC +E R+D +RFG PR+SPRQ+D+ Sbjct: 32 ENIILTSLDDLHNWARLSSLWPLLYGTACCFIEFAALIGSRFDFDRFGLVPRSSPRQADL 91 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPVDI 154 +IVAGT+T KMA AL R+Y+QMPEP+YVI+MG+C GG + S + VRG D+++PVD+ Sbjct: 92 LIVAGTVTMKMAPALVRLYEQMPEPKYVIAMGACTITGGMFSADSTTAVRGVDKLIPVDL 151 Query: 155 YVPGCPPTAEALIYGILLLQKKI 177 Y+PGCPP EA+ ++ L+KK+ Sbjct: 152 YLPGCPPRPEAIFDAVIKLRKKV 174 >gi|289751824|ref|ZP_06511202.1| LOW QUALITY PROTEIN: NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis T92] gi|289692411|gb|EFD59840.1| LOW QUALITY PROTEIN: NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis T92] Length = 185 Score = 160 bits (406), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 73/145 (50%), Positives = 110/145 (75%), Gaps = 2/145 (1%) Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95 G L+++V+++ + R SL TFGLACCA+EMM + PR+D+ RFG A+PRQ+D+ Sbjct: 10 GILLSTVEKVAGYVRKNSLWPATFGLACCAIEMMATAGPRFDIARFGMERFSATPRQADL 69 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155 MIVAG ++ KMA LR++YDQM EP++V++MG CA+ GG ++ +Y++V+G D +VPVDIY Sbjct: 70 MIVAGRVSQKMAPVLRQIYDQMAEPKWVLAMGVCASSGGMFN-NYAIVQGVDHVVPVDIY 128 Query: 156 VPGCPPTAEALIYGILLLQKKIRRV 180 +PGCPP E L++ IL L +KI+++ Sbjct: 129 LPGCPPRPEMLLHAILKLHEKIQQM 153 >gi|22652005|gb|AAN03554.1|AF381040_4 NADH dehydrogenase subunit K [Synechococcus sp. PCC 7002] Length = 241 Score = 160 bits (406), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 72/152 (47%), Positives = 110/152 (72%), Gaps = 2/152 (1%) Query: 27 SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP 86 S+++ +++ + ++T+VD L WAR SL + +G ACC +E R+D +RFG P Sbjct: 21 SQVTQDLS-ENVILTTVDDLYNWARLSSLWPLLYGTACCFIEFAALLGSRFDFDRFGLVP 79 Query: 87 RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCA-NGGGYYHYSYSVVRG 145 R+SPRQ+D+++VAGT+T KMA AL R+Y++MPEP+YVI+MG+C GG + S + VRG Sbjct: 80 RSSPRQADLILVAGTVTMKMAPALVRLYEEMPEPKYVIAMGACTITGGMFSSDSTTAVRG 139 Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 D+++PVD+Y+PGCPP EA+I I+ L+KK+ Sbjct: 140 VDKLIPVDLYIPGCPPRPEAIIDAIIKLRKKV 171 >gi|83814127|ref|YP_444539.1| NADH-quinone oxidoreductase chain b [Salinibacter ruber DSM 13855] gi|294506285|ref|YP_003570343.1| NADH-quinone oxidoreductase chain B [Salinibacter ruber M8] gi|123529616|sp|Q2S5J2|NUOB_SALRD RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|83755521|gb|ABC43634.1| NADH-quinone oxidoreductase chain b [Salinibacter ruber DSM 13855] gi|294342613|emb|CBH23391.1| NADH-quinone oxidoreductase chain B [Salinibacter ruber M8] Length = 213 Score = 160 bits (406), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 77/151 (50%), Positives = 107/151 (70%), Gaps = 2/151 (1%) Query: 30 SSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APRA 88 SS +GF T VD + WAR+ SLM M GLACCA+EMM + P+YD RFG A R Sbjct: 4 SSGTNGQGFFTTRVDTFLNWARSNSLMPMPMGLACCAIEMMGFAGPKYDSARFGSEAMRF 63 Query: 89 SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 148 SPRQ+D+MIVAG + KM+ A+RRV+DQM +P++ I+MG+CA+ GG H Y VV+G D Sbjct: 64 SPRQADLMIVAGWCSYKMSHAIRRVWDQMGDPKWCIAMGACASTGG-MHRCYGVVQGVDN 122 Query: 149 IVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179 +PVD+Y+ GCPP E++++ ++ +Q+KIR Sbjct: 123 FLPVDVYISGCPPRPESVLHALMDIQEKIRN 153 >gi|119714785|ref|YP_921750.1| NADH dehydrogenase subunit B [Nocardioides sp. JS614] gi|238065185|sp|A1SE28|NUOB_NOCSJ RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|119535446|gb|ABL80063.1| NADH dehydrogenase subunit B [Nocardioides sp. JS614] Length = 184 Score = 160 bits (406), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 75/144 (52%), Positives = 106/144 (73%), Gaps = 2/144 (1%) Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95 G L+++V+ L + R S +FGLACCA+EMM + P++DL RFG RASPRQ+DV Sbjct: 10 GVLLSTVEGLAGYMRKASFWPASFGLACCAIEMMTSGGPKHDLGRFGMEVFRASPRQADV 69 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155 MIVAG ++ KMA LR++YDQMPEP++V++MG CA+ GG ++ +Y+VV+G D +VPVD+Y Sbjct: 70 MIVAGRVSQKMAPVLRQIYDQMPEPKWVLAMGVCASSGGMFN-NYAVVQGVDHVVPVDMY 128 Query: 156 VPGCPPTAEALIYGILLLQKKIRR 179 +PGCPP + LI IL L K++ Sbjct: 129 LPGCPPRPQMLIDAILKLHDKVQH 152 >gi|78778680|ref|YP_396792.1| NADH dehydrogenase subunit B [Prochlorococcus marinus str. MIT 9312] gi|123554667|sp|Q31CN9|NDHK_PROM9 RecName: Full=NAD(P)H-quinone oxidoreductase subunit K; AltName: Full=NAD(P)H dehydrogenase I subunit K; AltName: Full=NDH-1 subunit K; Short=NDH-K gi|78712179|gb|ABB49356.1| NADH dehydrogenase subunit B [Prochlorococcus marinus str. MIT 9312] Length = 244 Score = 160 bits (405), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 71/143 (49%), Positives = 102/143 (71%), Gaps = 1/143 (0%) Query: 36 KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDV 95 + ++TS+D L WAR SL + +G ACC +E R+D +RFG PR+SPRQ+D+ Sbjct: 32 ENIILTSLDDLHNWARLSSLWPLLYGTACCFIEFAALIGSRFDFDRFGLVPRSSPRQADL 91 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPVDI 154 +IVAGT+T KMA AL R+Y+QMPEP+YVI+MG+C GG + S + VRG D+++PVD+ Sbjct: 92 LIVAGTVTMKMAPALVRLYEQMPEPKYVIAMGACTITGGMFSADSTTAVRGVDKLIPVDL 151 Query: 155 YVPGCPPTAEALIYGILLLQKKI 177 Y+PGCPP EA+ ++ L+KK+ Sbjct: 152 YLPGCPPRPEAIFDAVIKLRKKV 174 >gi|29337233|sp|Q31791|NDHK_ANTFO RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K gi|29122638|dbj|BAC55353.2| NADH dehydrogenase 27 kDa subunit [Anthoceros formosae] Length = 247 Score = 160 bits (405), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 72/154 (46%), Positives = 104/154 (67%), Gaps = 1/154 (0%) Query: 27 SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP 86 S + E T ++T+ + WAR SL + +G +CC +E R+D +R+G P Sbjct: 24 SSLPDETTSDSIILTTFNDFSNWARLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVP 83 Query: 87 RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRG 145 R+SPRQ+D++I AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG Sbjct: 84 RSSPRQADLIITAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRG 143 Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179 D+++PVDIY+PGCPP EA+I I+ L+K + R Sbjct: 144 VDKLIPVDIYLPGCPPKPEAIIDAIIKLRKGVAR 177 >gi|27808002|dbj|BAC55447.1| NADH dehydrogenase 27 kDa subunit [Anthoceros formosae] Length = 247 Score = 160 bits (405), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 72/154 (46%), Positives = 104/154 (67%), Gaps = 1/154 (0%) Query: 27 SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP 86 S + E T ++T+ + WAR SL + +G +CC +E R+D +R+G P Sbjct: 24 SSLPDETTSDSIILTTFNDFSNWARLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVP 83 Query: 87 RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRG 145 R+SPRQ+D++I AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG Sbjct: 84 RSSPRQADLIITAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRG 143 Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179 D+++PVDIY+PGCPP EA+I I+ L+K + R Sbjct: 144 VDKLIPVDIYLPGCPPKPEAIIDAIIKLRKGVAR 177 >gi|294056096|ref|YP_003549754.1| NADH-quinone oxidoreductase, B subunit [Coraliomargarita akajimensis DSM 45221] gi|293615429|gb|ADE55584.1| NADH-quinone oxidoreductase, B subunit [Coraliomargarita akajimensis DSM 45221] Length = 183 Score = 160 bits (405), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 78/154 (50%), Positives = 107/154 (69%), Gaps = 7/154 (4%) Query: 27 SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP 86 S++ E+ +VT D ++ W R S+ M GLACCA+E+M A R+D+ RFG Sbjct: 12 SKVEGEV-----IVTQADAVINWIRKHSVWPMPMGLACCAIELMAAGGSRFDISRFGMEV 66 Query: 87 -RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRG 145 R SPRQ+D MIVAGT+T KMA +RR+Y+QM EP++V++MG+CA+ GG Y SYS ++G Sbjct: 67 MRFSPRQADCMIVAGTVTYKMAEVVRRIYEQMAEPKWVVAMGACASSGGMYR-SYSTLQG 125 Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179 DRIVPVD+Y+ GCPP EAL+ ++ LQ KI R Sbjct: 126 VDRIVPVDVYISGCPPRPEALLDAMIKLQDKIGR 159 >gi|194132108|gb|ACF33362.1| NADH-plastoquinone oxidoreductase subunit K [Gonystylus bancanus] Length = 229 Score = 160 bits (405), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 71/147 (48%), Positives = 103/147 (70%), Gaps = 1/147 (0%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93 TH + T+++ L W+R SL + +G +CC +E R+D +R+G PR+SPRQ+ Sbjct: 13 THNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 72 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152 D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++PV Sbjct: 73 DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 132 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179 D+Y+PGCPP EA+I I L+KKI R Sbjct: 133 DVYLPGCPPKPEAVIDAITKLRKKISR 159 >gi|282897133|ref|ZP_06305135.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit [Raphidiopsis brookii D9] gi|281197785|gb|EFA72679.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit [Raphidiopsis brookii D9] Length = 244 Score = 160 bits (405), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 73/143 (51%), Positives = 100/143 (69%), Gaps = 1/143 (0%) Query: 36 KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDV 95 + ++T+VD L WAR SL + FG ACC +E R+D +RFG PR+SPRQ+D+ Sbjct: 30 ENVILTTVDDLYNWARLSSLWPLLFGTACCFIEFAALIGSRFDFDRFGLIPRSSPRQADL 89 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPVDI 154 +I AGT+T KM L R+Y+QMPEP+YVI+MG+C GG + S S VRG D+++PVD+ Sbjct: 90 LITAGTITMKMGPQLVRLYEQMPEPKYVIAMGACTITGGMFSVDSPSAVRGVDKLIPVDV 149 Query: 155 YVPGCPPTAEALIYGILLLQKKI 177 Y+PGCPP EA+I I+ L+KKI Sbjct: 150 YLPGCPPRPEAIIDAIIKLRKKI 172 >gi|215428603|ref|ZP_03426522.1| NADH dehydrogenase subunit C [Mycobacterium tuberculosis T92] Length = 420 Score = 160 bits (404), Expect = 9e-38, Method: Compositional matrix adjust. Identities = 73/145 (50%), Positives = 110/145 (75%), Gaps = 2/145 (1%) Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95 G L+++V+++ + R SL TFGLACCA+EMM + PR+D+ RFG A+PRQ+D+ Sbjct: 10 GILLSTVEKVAGYVRKNSLWPATFGLACCAIEMMATAGPRFDIARFGMERFSATPRQADL 69 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155 MIVAG ++ KMA LR++YDQM EP++V++MG CA+ GG ++ +Y++V+G D +VPVDIY Sbjct: 70 MIVAGRVSQKMAPVLRQIYDQMAEPKWVLAMGVCASSGGMFN-NYAIVQGVDHVVPVDIY 128 Query: 156 VPGCPPTAEALIYGILLLQKKIRRV 180 +PGCPP E L++ IL L +KI+++ Sbjct: 129 LPGCPPRPEMLLHAILKLHEKIQQM 153 >gi|84494929|ref|ZP_00994048.1| NADH dehydrogenase beta subunit [Janibacter sp. HTCC2649] gi|84384422|gb|EAQ00302.1| NADH dehydrogenase beta subunit [Janibacter sp. HTCC2649] Length = 198 Score = 160 bits (404), Expect = 9e-38, Method: Compositional matrix adjust. Identities = 73/144 (50%), Positives = 105/144 (72%), Gaps = 2/144 (1%) Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95 GF++T+++ + + R S+ TFGLACCA+EMM P YD+ RFG A+PRQ+D+ Sbjct: 10 GFVLTTLESVAGYMRKASIWPATFGLACCAIEMMAVGTPDYDIARFGMERFSATPRQADL 69 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155 MIVAG ++NKMA +R+VYDQMP P++VISMG CA+ GG ++ +Y++V+G D I+PVDIY Sbjct: 70 MIVAGRVSNKMAPVVRQVYDQMPNPKWVISMGVCASSGGMFN-NYAIVQGVDHIIPVDIY 128 Query: 156 VPGCPPTAEALIYGILLLQKKIRR 179 +PGCPP E L+ I+ L +I+ Sbjct: 129 LPGCPPRPEMLLNAIIELHDQIQN 152 >gi|172072907|ref|YP_001806668.1| NADH dehydrogenase subunit K [Cryptomeria japonica] gi|171854926|dbj|BAG16666.1| NADH-plastoquinone oxidoreductase subunit K [Cryptomeria japonica] gi|239794295|dbj|BAH73292.1| NADH-plastoquinone oxidoreductase subunit K [Cryptomeria japonica] gi|239794377|dbj|BAH73373.1| NADH-plastoquinone oxidoreductase subunit K [Cryptomeria japonica] Length = 268 Score = 160 bits (404), Expect = 9e-38, Method: Compositional matrix adjust. Identities = 72/152 (47%), Positives = 105/152 (69%), Gaps = 1/152 (0%) Query: 27 SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP 86 S + + T + T+++ L WAR SL + +G +CC +E R+D +R+G P Sbjct: 36 SSLLDQTTSNSVISTTLNDLSNWARLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVP 95 Query: 87 RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRG 145 R+SPRQ+D++I AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG Sbjct: 96 RSSPRQADLLITAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRG 155 Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 D+++PVDIY+PGCPP EA+I I+ L++KI Sbjct: 156 VDKLIPVDIYLPGCPPKPEAIIDAIIKLREKI 187 >gi|154795238|ref|NP_777417.3| NADH dehydrogenase subunit K [Anthoceros formosae] Length = 229 Score = 160 bits (404), Expect = 9e-38, Method: Compositional matrix adjust. Identities = 72/154 (46%), Positives = 104/154 (67%), Gaps = 1/154 (0%) Query: 27 SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP 86 S + E T ++T+ + WAR SL + +G +CC +E R+D +R+G P Sbjct: 6 SSLPDETTSDSIILTTFNDFSNWARLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVP 65 Query: 87 RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRG 145 R+SPRQ+D++I AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG Sbjct: 66 RSSPRQADLIITAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRG 125 Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179 D+++PVDIY+PGCPP EA+I I+ L+K + R Sbjct: 126 VDKLIPVDIYLPGCPPKPEAIIDAIIKLRKGVAR 159 >gi|158339661|ref|YP_001520668.1| NADH dehydrogenase subunit B [Acaryochloris marina MBIC11017] gi|218527877|sp|A8ZK18|NDHK2_ACAM1 RecName: Full=NAD(P)H-quinone oxidoreductase subunit K 2; AltName: Full=NAD(P)H dehydrogenase I subunit K 2; AltName: Full=NDH-1 subunit K 2; Short=NDH-K 2 gi|158309902|gb|ABW31518.1| proton-translocating NAD(P)H-quinone oxidoreductase, chain B, putative [Acaryochloris marina MBIC11017] Length = 209 Score = 160 bits (404), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 75/150 (50%), Positives = 105/150 (70%), Gaps = 4/150 (2%) Query: 32 EITHK---GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88 E+T + ++T++D L W + SL FG ACC +E M A R+D+ERFG PRA Sbjct: 18 EVTQELSDNVILTALDDLYDWVKMSSLYPFMFGTACCFMEFMGAYASRFDMERFGMIPRA 77 Query: 89 SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCD 147 +PRQ+D++I AGT+T K A AL R+Y+QMPEP+YV++MG+C GG + S S VRG D Sbjct: 78 TPRQADLLITAGTITMKYAPALVRLYEQMPEPKYVMAMGACTITGGMFSADSPSAVRGVD 137 Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 +++PVD+Y+PGCPP AEA++ I L+KKI Sbjct: 138 KLIPVDVYIPGCPPRAEAVLDAITKLRKKI 167 >gi|78183815|ref|YP_376249.1| NADH dehydrogenase subunit B [Synechococcus sp. CC9902] gi|123582227|sp|Q3B0C2|NDHK_SYNS9 RecName: Full=NAD(P)H-quinone oxidoreductase subunit K; AltName: Full=NAD(P)H dehydrogenase I subunit K; AltName: Full=NDH-1 subunit K; Short=NDH-K gi|78168109|gb|ABB25206.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit [Synechococcus sp. CC9902] Length = 244 Score = 160 bits (404), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 72/151 (47%), Positives = 108/151 (71%), Gaps = 2/151 (1%) Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87 +++E++ + ++TS+D L WAR SL + +G ACC +E R+D +RFG PR Sbjct: 25 EVTNELS-ENIILTSLDDLHNWARLSSLWPLLYGTACCFIEFAALLGSRFDFDRFGLVPR 83 Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGC 146 +SPRQ+D++IVAGT+T KMA AL R+Y+QMPEP+YVI+MG+C GG + S + VRG Sbjct: 84 SSPRQADLLIVAGTVTMKMAPALVRLYEQMPEPKYVIAMGACTITGGMFSADSTTAVRGV 143 Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 D+++PVD+Y+PGCPP EA+ ++ L+KK+ Sbjct: 144 DKLIPVDLYLPGCPPRPEAIFDAVIKLRKKV 174 >gi|313679548|ref|YP_004057287.1| NADH dehydrogenase subunit b [Oceanithermus profundus DSM 14977] gi|313152263|gb|ADR36114.1| NADH dehydrogenase subunit B [Oceanithermus profundus DSM 14977] Length = 184 Score = 160 bits (404), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 78/149 (52%), Positives = 109/149 (73%) Query: 29 ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88 + S+ + ++ ++D L+ AR+ S+ +TFG+ACCA+EMM P+ D +RFG R Sbjct: 4 LGSDERPRDIILGTLDDLINMARSRSMWPLTFGIACCAIEMMATWDPKIDADRFGMFFRN 63 Query: 89 SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 148 +PRQ+DVMIV+GT+ K+A LRR+YDQM EP++VISMG+CAN GG + YSVV G D+ Sbjct: 64 TPRQADVMIVSGTVNKKLAKRLRRLYDQMAEPKWVISMGACANQGGPFRQGYSVVEGVDK 123 Query: 149 IVPVDIYVPGCPPTAEALIYGILLLQKKI 177 IVPVD+Y+PGCPP EAL+ +LLL+ KI Sbjct: 124 IVPVDVYIPGCPPRPEALLQALLLLRDKI 152 >gi|282901528|ref|ZP_06309450.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit [Cylindrospermopsis raciborskii CS-505] gi|281193571|gb|EFA68546.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit [Cylindrospermopsis raciborskii CS-505] Length = 245 Score = 160 bits (404), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 73/143 (51%), Positives = 100/143 (69%), Gaps = 1/143 (0%) Query: 36 KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDV 95 + ++T+VD L WAR SL + FG ACC +E R+D +RFG PR+SPRQ+D+ Sbjct: 31 ENVILTTVDDLYNWARLSSLWPLLFGTACCFIEFAALIGSRFDFDRFGLIPRSSPRQADL 90 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPVDI 154 +I AGT+T KM L R+Y+QMPEP+YVI+MG+C GG + S S VRG D+++PVD+ Sbjct: 91 LITAGTITVKMGPQLVRLYEQMPEPKYVIAMGACTITGGMFSVDSPSAVRGVDKLIPVDV 150 Query: 155 YVPGCPPTAEALIYGILLLQKKI 177 Y+PGCPP EA+I I+ L+KKI Sbjct: 151 YLPGCPPRPEAIIDAIIKLRKKI 173 >gi|116071575|ref|ZP_01468843.1| NADH dehydrogenase beta subunit [Synechococcus sp. BL107] gi|116065198|gb|EAU70956.1| NADH dehydrogenase beta subunit [Synechococcus sp. BL107] Length = 244 Score = 160 bits (404), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 72/150 (48%), Positives = 108/150 (72%), Gaps = 2/150 (1%) Query: 29 ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88 +++E++ + ++TS+D L WAR SL + +G ACC +E R+D +RFG PR+ Sbjct: 26 VTNELS-ENIILTSLDDLHNWARLSSLWPLLYGTACCFIEFAALLGSRFDFDRFGLVPRS 84 Query: 89 SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCD 147 SPRQ+D++IVAGT+T KMA AL R+Y+QMPEP+YVI+MG+C GG + S + VRG D Sbjct: 85 SPRQADLLIVAGTVTMKMAPALVRLYEQMPEPKYVIAMGACTITGGMFSADSTTAVRGVD 144 Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 +++PVD+Y+PGCPP EA+ ++ L+KK+ Sbjct: 145 KLIPVDLYLPGCPPRPEAIFDAVIKLRKKV 174 >gi|218527900|sp|B1VKF5|NDHK_CRYJA RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K Length = 238 Score = 160 bits (404), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 72/152 (47%), Positives = 105/152 (69%), Gaps = 1/152 (0%) Query: 27 SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP 86 S + + T + T+++ L WAR SL + +G +CC +E R+D +R+G P Sbjct: 6 SSLLDQTTSNSVISTTLNDLSNWARLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVP 65 Query: 87 RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRG 145 R+SPRQ+D++I AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG Sbjct: 66 RSSPRQADLLITAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRG 125 Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 D+++PVDIY+PGCPP EA+I I+ L++KI Sbjct: 126 VDKLIPVDIYLPGCPPKPEAIIDAIIKLREKI 157 >gi|5139325|emb|CAB45640.1| NDH-K protein [Nostoc sp. PCC 7120] Length = 245 Score = 160 bits (404), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 72/143 (50%), Positives = 101/143 (70%), Gaps = 1/143 (0%) Query: 36 KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDV 95 + ++T+VD L WAR SL + FG ACC +E R+D +RFG PR+SPRQ+D+ Sbjct: 30 ENVILTTVDDLYNWARLSSLWPLLFGTACCFIEFAALIGSRFDFDRFGLIPRSSPRQADL 89 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPVDI 154 +I AGT+T KMA L R+Y+QMPEP+YVI+MG+C GG + S + VRG D+++PVD+ Sbjct: 90 IITAGTITMKMAPQLVRLYEQMPEPKYVIAMGACTITGGMFSVDSPTAVRGVDKLIPVDV 149 Query: 155 YVPGCPPTAEALIYGILLLQKKI 177 Y+PGCPP EA+I ++ L+KKI Sbjct: 150 YLPGCPPRPEAIIDAMIKLRKKI 172 >gi|94267895|ref|ZP_01291027.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit [delta proteobacterium MLMS-1] gi|93451814|gb|EAT02564.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit [delta proteobacterium MLMS-1] Length = 177 Score = 160 bits (404), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 74/138 (53%), Positives = 102/138 (73%), Gaps = 3/138 (2%) Query: 43 VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGT 101 +D+L+ R SL +TFGLACCA+EMM R+DL+RFG R +P+QSDVMIVAGT Sbjct: 25 LDKLLNLGRANSLWPLTFGLACCAIEMMATGASRFDLDRFGMGVFRPAPKQSDVMIVAGT 84 Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS--YSVVRGCDRIVPVDIYVPGC 159 ++ KMA A+ +Y+QMP P++VI+MG+CA GG + + Y +V G D+IVPVD+Y+PGC Sbjct: 85 VSKKMAPAVVTLYEQMPHPKWVIAMGNCAISGGPFAFEGQYGIVEGADKIVPVDVYIPGC 144 Query: 160 PPTAEALIYGILLLQKKI 177 PP EALI G+L L++K+ Sbjct: 145 PPRPEALIEGLLQLEEKL 162 >gi|194476962|ref|YP_002049141.1| NADH dehydrogenase beta subunit [Paulinella chromatophora] gi|218527929|sp|B1X4R2|NDHK_PAUCH RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, organellar chromatophore; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K gi|171191969|gb|ACB42931.1| NADH dehydrogenase beta subunit [Paulinella chromatophora] Length = 246 Score = 160 bits (404), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 74/148 (50%), Positives = 104/148 (70%), Gaps = 4/148 (2%) Query: 36 KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDV 95 + ++TS+D L WAR SL + +G ACC +E R+D +RFG PR+SPRQ+D+ Sbjct: 30 ENIILTSLDDLHNWARLSSLWPLLYGTACCFIEFAALIGSRFDFDRFGLVPRSSPRQADL 89 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCA-NGGGYYHYSYSVVRGCDRIVPVDI 154 +IVAGT+T KMA AL R+Y+QMPEP+YVI+MG+C GG + S + VRG D+++PVD+ Sbjct: 90 IIVAGTVTMKMAPALVRLYEQMPEPKYVIAMGACTITGGMFSSDSTTAVRGVDKLIPVDL 149 Query: 155 YVPGCPPTAEALIYGILLLQKKIRRVGN 182 Y+PGCPP EA+ ++ L+KK VGN Sbjct: 150 YLPGCPPRPEAIFDAVIKLRKK---VGN 174 >gi|77917822|ref|YP_355637.1| trifunctional NADH dehydrogenase I subunit B/C/D [Pelobacter carbinolicus DSM 2380] gi|123575097|sp|Q3A825|NUBCD_PELCD RecName: Full=NADH-quinone oxidoreductase subunit B/C/D; AltName: Full=NADH dehydrogenase I subunit B/C/D; AltName: Full=NDH-1 subunit B/C/D gi|77543905|gb|ABA87467.1| NADH dehydrogenase subunit B / NADH dehydrogenase subunit D / NADH dehydrogenase subunit C [Pelobacter carbinolicus DSM 2380] Length = 794 Score = 160 bits (404), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 73/150 (48%), Positives = 108/150 (72%), Gaps = 2/150 (1%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RAS 89 SE K ++T++D + W R S+ M FGL+CC VEMM + PR+DL RFG R + Sbjct: 2 SESIPKNIILTTLDDAINWGRKNSMWPMFFGLSCCFVEMMGSMTPRFDLARFGAEVLRGT 61 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PR++D+M++AGT KMA+++ RVY++M P++VI+MGSCAN GG Y YSV++G +++ Sbjct: 62 PREADLMVIAGTPFKKMAASMLRVYEEMANPKWVIAMGSCANSGGMYDV-YSVMQGVNQV 120 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRR 179 +PVD+Y+PGCPP EA + G++ LQ+KI R Sbjct: 121 LPVDVYIPGCPPRPEAFMQGLMTLQEKIAR 150 >gi|317123846|ref|YP_004097958.1| NADH dehydrogenase subunit B [Intrasporangium calvum DSM 43043] gi|315587934|gb|ADU47231.1| NADH dehydrogenase subunit B [Intrasporangium calvum DSM 43043] Length = 184 Score = 160 bits (404), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 74/149 (49%), Positives = 107/149 (71%), Gaps = 2/149 (1%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RAS 89 E GFL+++V+ L + R S+ +TFGLACCA+EMM P YD+ RFG A+ Sbjct: 4 EEKLPAGFLLSTVEGLAGYMRKASMWPVTFGLACCAIEMMAVGTPDYDIARFGMERFSAT 63 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQ+D+MIVAG ++ KMA +R+VYDQMP P++VISMG CA+ GG ++ +Y++V+G D I Sbjct: 64 PRQADLMIVAGRVSQKMAPVVRQVYDQMPNPKWVISMGVCASSGGMFN-NYAIVQGVDHI 122 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIR 178 +PVDIY+PGCPP + L+ I+ L K+++ Sbjct: 123 IPVDIYLPGCPPRPQMLLNAIIELHKQVQ 151 >gi|148241313|ref|YP_001226470.1| NADH dehydrogenase subunit B [Synechococcus sp. RCC307] gi|218527933|sp|A5GQF8|NDHK_SYNR3 RecName: Full=NAD(P)H-quinone oxidoreductase subunit K; AltName: Full=NAD(P)H dehydrogenase I subunit K; AltName: Full=NDH-1 subunit K; Short=NDH-K gi|147849623|emb|CAK27117.1| NAD(P)H-quinone oxidoreductase subunit K [Synechococcus sp. RCC307] Length = 242 Score = 160 bits (404), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 74/152 (48%), Positives = 106/152 (69%), Gaps = 4/152 (2%) Query: 30 SSEIT---HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP 86 S E+T + ++TS+D L WAR SL + +G ACC +E R+D +RFG P Sbjct: 22 SPEVTTDLSENVILTSLDDLHNWARLSSLWPLLYGTACCFIEFAALIGSRFDFDRFGLVP 81 Query: 87 RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRG 145 R+SPRQ+D++IVAGT+T KMA AL R+Y+QMPEP+YVI+MG+C GG + S + VRG Sbjct: 82 RSSPRQADLLIVAGTVTMKMAPALVRLYEQMPEPKYVIAMGACTITGGMFSADSTTAVRG 141 Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 D+++PVD+Y+PGCPP EA+ ++ L+KK+ Sbjct: 142 VDKLIPVDLYLPGCPPRPEAIFDAVIKLRKKV 173 >gi|78211756|ref|YP_380535.1| NADH dehydrogenase subunit B [Synechococcus sp. CC9605] gi|123578940|sp|Q3AN52|NDHK_SYNSC RecName: Full=NAD(P)H-quinone oxidoreductase subunit K; AltName: Full=NAD(P)H dehydrogenase I subunit K; AltName: Full=NDH-1 subunit K; Short=NDH-K gi|78196215|gb|ABB33980.1| NADH-quinone oxidoreductase, B subunit [Synechococcus sp. CC9605] Length = 246 Score = 159 bits (403), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 71/143 (49%), Positives = 102/143 (71%), Gaps = 1/143 (0%) Query: 36 KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDV 95 + ++TS+D L WAR SL + +G ACC +E R+D +RFG PR+SPRQ+D+ Sbjct: 34 ENVILTSLDDLHNWARLSSLWPLLYGTACCFIEFAALLGSRFDFDRFGLVPRSSPRQADL 93 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPVDI 154 +IVAGT+T KMA AL R+Y+QMPEP+YVI+MG+C GG + S + VRG D+++PVD+ Sbjct: 94 LIVAGTVTMKMAPALVRLYEQMPEPKYVIAMGACTITGGMFSADSTTAVRGVDKLIPVDL 153 Query: 155 YVPGCPPTAEALIYGILLLQKKI 177 Y+PGCPP EA+ ++ L+KK+ Sbjct: 154 YLPGCPPRPEAIFDAVIKLRKKV 176 >gi|33864158|ref|NP_895718.1| NADH dehydrogenase subunit B [Prochlorococcus marinus str. MIT 9313] gi|81576854|sp|Q7V4Q5|NDHK_PROMM RecName: Full=NAD(P)H-quinone oxidoreductase subunit K; AltName: Full=NAD(P)H dehydrogenase I subunit K; AltName: Full=NDH-1 subunit K; Short=NDH-K gi|33635742|emb|CAE22067.1| putative respiratory-chain NADH dehydrogenase subunit [Prochlorococcus marinus str. MIT 9313] Length = 250 Score = 159 bits (403), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 72/150 (48%), Positives = 108/150 (72%), Gaps = 2/150 (1%) Query: 29 ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88 ++S+++ + ++TS+D L WAR SL + +G ACC +E R+D +RFG PR+ Sbjct: 26 VTSDLS-ENIILTSLDDLHNWARLSSLWPLLYGTACCFIEFAALIGSRFDFDRFGLVPRS 84 Query: 89 SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCD 147 SPRQ+D++IVAGT+T KMA AL R+Y+QMPEP+YVI+MG+C GG + S + VRG D Sbjct: 85 SPRQADLLIVAGTVTMKMAPALVRLYEQMPEPKYVIAMGACTITGGMFSADSTTAVRGVD 144 Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 +++PVD+Y+PGCPP EA+ ++ L+KK+ Sbjct: 145 KLIPVDLYLPGCPPRPEAIFDAVIKLRKKV 174 >gi|33864744|ref|NP_896303.1| NADH dehydrogenase subunit B [Synechococcus sp. WH 8102] gi|81575356|sp|Q7U9P5|NDHK_SYNPX RecName: Full=NAD(P)H-quinone oxidoreductase subunit K; AltName: Full=NAD(P)H dehydrogenase I subunit K; AltName: Full=NDH-1 subunit K; Short=NDH-K gi|33632267|emb|CAE06723.1| NADH dehydrogenase I chain B or NdhK [Synechococcus sp. WH 8102] Length = 246 Score = 159 bits (403), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 72/150 (48%), Positives = 108/150 (72%), Gaps = 2/150 (1%) Query: 29 ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88 ++S+++ + ++TS+D L WAR SL + +G ACC +E R+D +RFG PR+ Sbjct: 28 VTSDLS-ENVILTSLDDLHNWARLSSLWPLLYGTACCFIEFAALLGSRFDFDRFGLVPRS 86 Query: 89 SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCD 147 SPRQ+D++IVAGT+T KMA AL R+Y+QMPEP+YVI+MG+C GG + S + VRG D Sbjct: 87 SPRQADLLIVAGTVTMKMAPALVRLYEQMPEPKYVIAMGACTITGGMFSADSTTAVRGVD 146 Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 +++PVD+Y+PGCPP EA+ ++ L+KK+ Sbjct: 147 KLIPVDLYMPGCPPRPEAIFDAVIKLRKKV 176 >gi|256831780|ref|YP_003160507.1| NADH-quinone oxidoreductase, B subunit [Jonesia denitrificans DSM 20603] gi|256685311|gb|ACV08204.1| NADH-quinone oxidoreductase, B subunit [Jonesia denitrificans DSM 20603] Length = 183 Score = 159 bits (403), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 75/144 (52%), Positives = 105/144 (72%), Gaps = 2/144 (1%) Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95 GF S++ + R GS+ +TFGLACCA+EMM + R+D+ RFG RASPRQ+D+ Sbjct: 9 GFFTASLEDVAGLFRKGSMWPVTFGLACCAIEMMATASSRFDVARFGMEVFRASPRQADL 68 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155 MIVAG ++ KMA +R+VYDQM EP++V+SMG CA+ GG ++ +Y++V+G D IVPVDIY Sbjct: 69 MIVAGRVSQKMAPVVRQVYDQMAEPKWVLSMGVCASSGGMFN-NYAIVQGVDHIVPVDIY 127 Query: 156 VPGCPPTAEALIYGILLLQKKIRR 179 +PGCPP E LI +L L K+++ Sbjct: 128 LPGCPPRPEMLINAMLELHKQVQE 151 >gi|57864900|gb|AAW57074.1| NADH dehydrogenase subunit K [cyanobacterium endosymbiont of Rhopalodia gibba] Length = 281 Score = 159 bits (403), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 71/152 (46%), Positives = 108/152 (71%), Gaps = 2/152 (1%) Query: 27 SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP 86 S+++ +++ + ++T+VD L WAR SL + +G ACC +E R+D +RFG P Sbjct: 58 SQVTQDLS-ENVILTTVDDLHNWARLSSLWPLLYGTACCFIEFAALIGSRFDFDRFGLVP 116 Query: 87 RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCA-NGGGYYHYSYSVVRG 145 R+SPRQ+D++I AGT+T KMA AL R+Y+QMP+P+YVI+MG+C GG + S + VRG Sbjct: 117 RSSPRQADLIITAGTITMKMAPALVRLYEQMPDPKYVIAMGACTITGGMFSSDSTTAVRG 176 Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 D+++PVD+Y+PGCPP EA+ I+ L+KK+ Sbjct: 177 VDKLIPVDVYIPGCPPRPEAIFDAIIKLRKKV 208 >gi|75248911|sp|Q8WI14|NDHK_PSINU RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K gi|18389468|dbj|BAB84220.1| NADH dehydrogenase 27kD subunit [Psilotum nudum] Length = 207 Score = 159 bits (403), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 71/152 (46%), Positives = 105/152 (69%), Gaps = 1/152 (0%) Query: 27 SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP 86 S +S T ++T+++ WAR SL + +G +CC +E R+D +R+G P Sbjct: 10 SLVSKPNTSNSIILTNLNDFSNWARLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVP 69 Query: 87 RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRG 145 R+SPRQ+D++I AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG Sbjct: 70 RSSPRQADLIITAGTVTMKMAPSLIRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRG 129 Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 D+++PVDIY+PGCPP EA+I ++ L+KK+ Sbjct: 130 VDKLIPVDIYLPGCPPKPEAIIDAVIKLRKKV 161 >gi|218440674|ref|YP_002379003.1| NADH dehydrogenase subunit B [Cyanothece sp. PCC 7424] gi|238065002|sp|B7KJ51|NDHK_CYAP7 RecName: Full=NAD(P)H-quinone oxidoreductase subunit K; AltName: Full=NAD(P)H dehydrogenase I subunit K; AltName: Full=NDH-1 subunit K; Short=NDH-K gi|218173402|gb|ACK72135.1| NADH-quinone oxidoreductase, B subunit [Cyanothece sp. PCC 7424] Length = 247 Score = 159 bits (403), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 71/154 (46%), Positives = 109/154 (70%), Gaps = 2/154 (1%) Query: 25 DFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF 84 + S+++ +++ + ++T+VD L WAR SL + +G ACC +E R+D +RFG Sbjct: 25 NHSQVTQDLS-ENVILTTVDDLYNWARLSSLWPLLYGTACCFIEFAALIGSRFDFDRFGL 83 Query: 85 APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCA-NGGGYYHYSYSVV 143 PR+SPRQ+D++I AGT+T KMA AL R+Y+QMP+P+YVI+MG+C GG + S + V Sbjct: 84 VPRSSPRQADLIITAGTITMKMAPALVRLYEQMPDPKYVIAMGACTITGGMFSSDSTTAV 143 Query: 144 RGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 RG D+++PVD+Y+PGCPP EA+ I+ L+KK+ Sbjct: 144 RGVDKLIPVDVYIPGCPPRPEAIFDAIVKLRKKV 177 >gi|21228592|ref|NP_634514.1| F420H2 dehydrogenase subunit [Methanosarcina mazei Go1] gi|7649014|gb|AAF65732.1|AF228525_2 F420H2 dehydrogenase subunit FpoB [Methanosarcina mazei Go1] gi|20907086|gb|AAM32186.1| F420H2 dehydrogenase subunit [Methanosarcina mazei Go1] Length = 184 Score = 159 bits (403), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 73/159 (45%), Positives = 101/159 (63%), Gaps = 1/159 (0%) Query: 20 EKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDL 79 E+V + +S I H T ++ W R SL +MT + CC VEM+ YD Sbjct: 18 EEVPGVITTTTSAI-HNFLKKTKAQDIINWGRKNSLWFMTQPMGCCGVEMIATGCAHYDT 76 Query: 80 ERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS 139 +RFG PR SPR +DVMI++G +T K AL+R++DQMP P++VI+MG CA GG ++ S Sbjct: 77 DRFGIIPRNSPRHADVMIISGYVTKKYLPALKRLWDQMPAPKWVIAMGDCAISGGPFYES 136 Query: 140 YSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 YS V+ D I P+D+Y+PGCPP EALI G + LQ+KI+ Sbjct: 137 YSTVQNIDEIFPIDVYIPGCPPRPEALIQGFVELQEKIK 175 >gi|116075555|ref|ZP_01472814.1| NADH dehydrogenase subunit B [Synechococcus sp. RS9916] gi|116066870|gb|EAU72625.1| NADH dehydrogenase subunit B [Synechococcus sp. RS9916] Length = 255 Score = 159 bits (403), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 71/143 (49%), Positives = 102/143 (71%), Gaps = 1/143 (0%) Query: 36 KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDV 95 + ++TS+D L WAR SL + +G ACC +E R+D +RFG PR+SPRQ+D+ Sbjct: 39 ENVILTSLDDLHNWARLSSLWPLLYGTACCFIEFAALIGSRFDFDRFGLVPRSSPRQADL 98 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPVDI 154 +IVAGT+T KMA AL R+Y+QMPEP+YVI+MG+C GG + S + VRG D+++PVD+ Sbjct: 99 LIVAGTVTMKMAPALVRLYEQMPEPKYVIAMGACTITGGMFSADSTTAVRGVDKLIPVDL 158 Query: 155 YVPGCPPTAEALIYGILLLQKKI 177 Y+PGCPP EA+ ++ L+KK+ Sbjct: 159 YLPGCPPRPEAIFDAVIKLRKKV 181 >gi|154813768|ref|NP_569633.2| NADH dehydrogenase subunit K [Psilotum nudum] Length = 203 Score = 159 bits (403), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 71/152 (46%), Positives = 105/152 (69%), Gaps = 1/152 (0%) Query: 27 SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP 86 S +S T ++T+++ WAR SL + +G +CC +E R+D +R+G P Sbjct: 6 SLVSKPNTSNSIILTNLNDFSNWARLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVP 65 Query: 87 RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRG 145 R+SPRQ+D++I AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG Sbjct: 66 RSSPRQADLIITAGTVTMKMAPSLIRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRG 125 Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 D+++PVDIY+PGCPP EA+I ++ L+KK+ Sbjct: 126 VDKLIPVDIYLPGCPPKPEAIIDAVIKLRKKV 157 >gi|332706504|ref|ZP_08426565.1| NADH-quinone oxidoreductase, B subunit [Lyngbya majuscula 3L] gi|332354388|gb|EGJ33867.1| NADH-quinone oxidoreductase, B subunit [Lyngbya majuscula 3L] Length = 248 Score = 159 bits (403), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 71/143 (49%), Positives = 101/143 (70%), Gaps = 1/143 (0%) Query: 36 KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDV 95 + ++T+VD L WAR SL M +G ACC +E R+D +RFG PR+SPRQ+D+ Sbjct: 35 ENVILTTVDDLYNWARLSSLWPMLYGTACCFIEFAAMIGSRFDFDRFGLVPRSSPRQADL 94 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPVDI 154 +I AGT+T KM AL R+Y+QMPEP+YVI+MG+C GG + S + VRG D+++PVD+ Sbjct: 95 IITAGTITMKMGPALVRLYEQMPEPKYVIAMGACTITGGMFSVDSPTAVRGVDKLIPVDV 154 Query: 155 YVPGCPPTAEALIYGILLLQKKI 177 Y+PGCPP EA++ I+ L+KK+ Sbjct: 155 YIPGCPPRPEAIMDAIVKLRKKV 177 >gi|77164635|ref|YP_343160.1| NADH dehydrogenase subunit B [Nitrosococcus oceani ATCC 19707] gi|254434174|ref|ZP_05047682.1| NADH-quinone oxidoreductase, B subunit subfamily, putative [Nitrosococcus oceani AFC27] gi|123594559|sp|Q3JC16|NUOB1_NITOC RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName: Full=NADH dehydrogenase I subunit B 1; AltName: Full=NDH-1 subunit B 1 gi|76882949|gb|ABA57630.1| NADH dehydrogenase subunit B [Nitrosococcus oceani ATCC 19707] gi|207090507|gb|EDZ67778.1| NADH-quinone oxidoreductase, B subunit subfamily, putative [Nitrosococcus oceani AFC27] Length = 212 Score = 159 bits (403), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 77/165 (46%), Positives = 110/165 (66%), Gaps = 6/165 (3%) Query: 14 QSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQAS 73 Q++ S+E+ F + + L + LV W R SL FGL+CC VEM+ + Sbjct: 9 QAATSIEQSKGSFE----DAIRRNLLFAQLQDLVAWGRKNSLWPYNFGLSCCYVEMVTSF 64 Query: 74 MPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANG 132 +YD+ RFG RA+PR++D+M+++GT+ KMA ++R+Y+QM EPR+VISMGSCAN Sbjct: 65 TSKYDIARFGAEVIRATPREADLMVISGTVFIKMAPVIKRLYEQMMEPRWVISMGSCANS 124 Query: 133 GGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 GG Y YSVV+G D+ +PVD+YVPGCPP +A + G+LLLQ+ I Sbjct: 125 GGMYDI-YSVVQGVDKFLPVDVYVPGCPPRPDAFLEGLLLLQEAI 168 >gi|22711920|ref|NP_683807.1| NADH dehydrogenase subunit K [Chaetosphaeridium globosum] gi|75272587|sp|Q8M9X9|NDHK_CHAGL RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K gi|22416924|gb|AAM96524.1| subunit K of NADH-ubiquinone oxidoreductase [Chaetosphaeridium globosum] Length = 242 Score = 159 bits (403), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 72/158 (45%), Positives = 108/158 (68%), Gaps = 6/158 (3%) Query: 21 KVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLE 80 K +D +S+ I ++T+++ WAR SL + +G +CC +E R+D + Sbjct: 26 KTSSDKEELSNSI-----ILTTLNDFSNWARLSSLWPLLYGTSCCFIEFAALIGSRFDFD 80 Query: 81 RFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-S 139 R+G PR+SPRQ+D++I AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + S Sbjct: 81 RYGLVPRSSPRQADLIITAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDS 140 Query: 140 YSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 YS VRG D+++PVDIY+PGCPP EA+I ++ L+KK+ Sbjct: 141 YSTVRGVDKLIPVDIYLPGCPPKPEAIIDAVIKLRKKV 178 >gi|33239776|ref|NP_874718.1| NADH dehydrogenase subunit B [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|81664982|sp|Q7VDP4|NDHK_PROMA RecName: Full=NAD(P)H-quinone oxidoreductase subunit K; AltName: Full=NAD(P)H dehydrogenase I subunit K; AltName: Full=NDH-1 subunit K; Short=NDH-K gi|33237302|gb|AAP99370.1| NAD(P)H-quinone oxidoreductase subunit K [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 242 Score = 159 bits (402), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 71/150 (47%), Positives = 108/150 (72%), Gaps = 2/150 (1%) Query: 29 ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88 ++S+++ + ++TS+D L WAR SL + +G ACC +E R+D +RFG PR+ Sbjct: 26 VTSDLS-ENIILTSLDDLHNWARLSSLWPLLYGTACCFIEFAALIGSRFDFDRFGLVPRS 84 Query: 89 SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCD 147 SPRQ+D++IVAGT+T KMA AL R+Y+QMP+P+YVI+MG+C GG + S + VRG D Sbjct: 85 SPRQADLLIVAGTVTMKMAPALVRLYEQMPDPKYVIAMGACTITGGMFSADSTTAVRGVD 144 Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 +++PVD+Y+PGCPP EA+ ++ L+KK+ Sbjct: 145 KLIPVDLYLPGCPPRPEAIFDAVIKLRKKV 174 >gi|108773214|ref|YP_635742.1| NADH dehydrogenase subunit K [Chara vulgaris] gi|122231312|sp|Q1ACK5|NDHK_CHAVU RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K gi|77157870|gb|ABA61911.1| 27 kDa subunit of NADH-ubiquinone oxidoreductase [Chara vulgaris] Length = 244 Score = 159 bits (402), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 74/167 (44%), Positives = 113/167 (67%), Gaps = 7/167 (4%) Query: 18 SLEKVDADFSRISSE------ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQ 71 SL++ + DF S+E I ++T+++ L WAR SL + +G +CC +E Sbjct: 14 SLKETNHDFLINSTERLTTNQILSTSVILTTMNDLTNWARLSSLWPLLYGTSCCFIEFAS 73 Query: 72 ASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCAN 131 R+D +R+G PR+SPRQ+D++I AGT+T KMA +L R+Y+QM EP+YVI+MG+C Sbjct: 74 LIGSRFDFDRYGLVPRSSPRQADLIITAGTVTMKMAPSLVRLYEQMAEPKYVIAMGACTI 133 Query: 132 GGGYYHY-SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 GG + SYS VRG D+++PV++Y+PGCPP EA+I G++ L+K+I Sbjct: 134 TGGMFSTDSYSTVRGVDKLIPVNVYLPGCPPKPEAIIDGVIKLRKQI 180 >gi|307154794|ref|YP_003890178.1| NADH-quinone oxidoreductase subunit B [Cyanothece sp. PCC 7822] gi|306985022|gb|ADN16903.1| NADH-quinone oxidoreductase, B subunit [Cyanothece sp. PCC 7822] Length = 248 Score = 159 bits (402), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 75/175 (42%), Positives = 115/175 (65%), Gaps = 4/175 (2%) Query: 4 TTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLA 63 TT + I Q L ++ ++++ +++ + ++T+VD L WAR SL M +G A Sbjct: 6 TTQSDLFIQQQKEQILNPINR--TKVTQDLS-ENVILTTVDDLYNWARLSSLWPMLYGTA 62 Query: 64 CCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYV 123 CC +E R+D +RFG PR+SPRQ+D++I AGT+T KM AL R+Y+QMP+P+YV Sbjct: 63 CCFIEFAALIGSRFDFDRFGLVPRSSPRQADLIITAGTITMKMGPALVRLYEQMPDPKYV 122 Query: 124 ISMGSCA-NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 I+MG+C GG + S + VRG D+++PVD+Y+PGCPP EA+ I+ L+KK+ Sbjct: 123 IAMGACTITGGMFSSDSTTAVRGVDKLIPVDVYIPGCPPRPEAIFDAIIKLRKKV 177 >gi|159902860|ref|YP_001550204.1| NADH dehydrogenase subunit B [Prochlorococcus marinus str. MIT 9211] gi|218527920|sp|A9BDU0|NDHK_PROM4 RecName: Full=NAD(P)H-quinone oxidoreductase subunit K; AltName: Full=NAD(P)H dehydrogenase I subunit K; AltName: Full=NDH-1 subunit K; Short=NDH-K gi|159888036|gb|ABX08250.1| putative respiratory-chain NADH dehydrogenase subunit [Prochlorococcus marinus str. MIT 9211] Length = 252 Score = 159 bits (402), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 71/150 (47%), Positives = 108/150 (72%), Gaps = 2/150 (1%) Query: 29 ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88 +++E++ + ++TS+D L WAR SL + +G ACC +E R+D +RFG PR+ Sbjct: 39 VTNELS-ENIILTSLDDLHNWARLSSLWPLLYGTACCFIEFAALIGSRFDFDRFGLVPRS 97 Query: 89 SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCD 147 SPRQ+D++IVAGT+T KMA AL R+Y+QMP+P+YVI+MG+C GG + S + VRG D Sbjct: 98 SPRQADLLIVAGTVTMKMAPALVRLYEQMPDPKYVIAMGACTITGGMFSADSTTAVRGVD 157 Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 +++PVD+Y+PGCPP EA+ ++ L+KK+ Sbjct: 158 KLIPVDLYLPGCPPRPEAIFDAVIKLRKKV 187 >gi|260436695|ref|ZP_05790665.1| NAD(P)H-quinone oxidoreductase subunit K [Synechococcus sp. WH 8109] gi|260414569|gb|EEX07865.1| NAD(P)H-quinone oxidoreductase subunit K [Synechococcus sp. WH 8109] Length = 246 Score = 159 bits (402), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 71/143 (49%), Positives = 102/143 (71%), Gaps = 1/143 (0%) Query: 36 KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDV 95 + ++TS+D L WAR SL + +G ACC +E R+D +RFG PR+SPRQ+D+ Sbjct: 34 ENVILTSLDDLHNWARLSSLWPLLYGTACCFIEFAALLGSRFDFDRFGLVPRSSPRQADL 93 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPVDI 154 +IVAGT+T KMA AL R+Y+QMPEP+YVI+MG+C GG + S + VRG D+++PVD+ Sbjct: 94 LIVAGTVTMKMAPALVRLYEQMPEPKYVIAMGACTITGGMFSADSTTAVRGVDKLIPVDL 153 Query: 155 YVPGCPPTAEALIYGILLLQKKI 177 Y+PGCPP EA+ ++ L+KK+ Sbjct: 154 YLPGCPPRPEAIFDAVIKLRKKV 176 >gi|218886689|ref|YP_002436010.1| NADH-quinone oxidoreductase subunit beta [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|238065123|sp|B8DS03|NUOB_DESVM RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|218757643|gb|ACL08542.1| NADH-quinone oxidoreductase, B subunit [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 187 Score = 159 bits (402), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 78/141 (55%), Positives = 102/141 (72%), Gaps = 3/141 (2%) Query: 40 VTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMIV 98 V V +++ R SL MTFGLACCA+EMM M R+D+ RFG R SPRQSD+MIV Sbjct: 27 VAPVQKILDVCRAMSLWPMTFGLACCAIEMMAVGMARFDISRFGAEVFRPSPRQSDLMIV 86 Query: 99 AGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS--YSVVRGCDRIVPVDIYV 156 AGT+T KMA AL R+Y+QMP PRYV+++G+CA GG +++ Y++V G D +VPVD+YV Sbjct: 87 AGTVTRKMAPALVRLYEQMPAPRYVMALGNCAISGGPFNFEGQYAIVEGVDNLVPVDVYV 146 Query: 157 PGCPPTAEALIYGILLLQKKI 177 PGCPP EAL+ G+ +Q KI Sbjct: 147 PGCPPRPEALLEGLFQIQHKI 167 >gi|218245900|ref|YP_002371271.1| NADH dehydrogenase subunit B [Cyanothece sp. PCC 8801] gi|257058948|ref|YP_003136836.1| NADH dehydrogenase subunit B [Cyanothece sp. PCC 8802] gi|238065003|sp|B7K0X4|NDHK_CYAP8 RecName: Full=NAD(P)H-quinone oxidoreductase subunit K; AltName: Full=NAD(P)H dehydrogenase I subunit K; AltName: Full=NDH-1 subunit K; Short=NDH-K gi|218166378|gb|ACK65115.1| NADH-quinone oxidoreductase, B subunit [Cyanothece sp. PCC 8801] gi|256589114|gb|ACV00001.1| NADH-quinone oxidoreductase, B subunit [Cyanothece sp. PCC 8802] Length = 250 Score = 159 bits (402), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 70/143 (48%), Positives = 101/143 (70%), Gaps = 1/143 (0%) Query: 36 KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDV 95 + ++T+VD L WAR SL + +G ACC +E R+D +RFG PR+SPRQ+D+ Sbjct: 35 ENIILTTVDDLHNWARLSSLWPLLYGTACCFIEFAALIGSRFDFDRFGLVPRSSPRQADL 94 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCA-NGGGYYHYSYSVVRGCDRIVPVDI 154 +I AGT+T KMA AL R+Y++MPEP+YVI+MG+C GG + S + VRG D+++PVD+ Sbjct: 95 IITAGTITMKMAPALVRLYEEMPEPKYVIAMGACTITGGMFSSDSTTAVRGVDKLIPVDV 154 Query: 155 YVPGCPPTAEALIYGILLLQKKI 177 Y+PGCPP EA+ I+ L+KK+ Sbjct: 155 YIPGCPPRPEAIFDAIIKLRKKV 177 >gi|224178049|ref|YP_002600947.1| 27 kDa subunit of NADH-ubiquinone oxidoreductase [Pyramimonas parkeae] gi|215882716|gb|ACJ71089.1| 27 kDa subunit of NADH-ubiquinone oxidoreductase [Pyramimonas parkeae] Length = 232 Score = 159 bits (402), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 75/173 (43%), Positives = 113/173 (65%), Gaps = 12/173 (6%) Query: 6 VNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACC 65 +N+K+ ++S KV D S + T+++ L WAR SL + +G +CC Sbjct: 3 LNEKL---KNSLESSKVTEDLS--------TNVIFTTLNDLHNWARLSSLWPLLYGTSCC 51 Query: 66 AVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVIS 125 +E R+D +RFG PR+SPRQ+D++I AGT+T KMA +L R+Y+QMPEP+YVI+ Sbjct: 52 FIEFASLIGSRFDFDRFGLVPRSSPRQADLIITAGTVTMKMAPSLVRLYEQMPEPKYVIA 111 Query: 126 MGSCANGGGYYHY-SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 MG+C GG + SY+ VRG D+++PVD+Y+PGCPP EA+I ++ L+KK+ Sbjct: 112 MGACTITGGMFSTDSYTTVRGVDKLIPVDVYLPGCPPKPEAIIDAVIKLRKKV 164 >gi|87123074|ref|ZP_01078925.1| putative respiratory-chain NADH dehydrogenase subunit [Synechococcus sp. RS9917] gi|86168794|gb|EAQ70050.1| putative respiratory-chain NADH dehydrogenase subunit [Synechococcus sp. RS9917] Length = 246 Score = 159 bits (402), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 72/150 (48%), Positives = 108/150 (72%), Gaps = 2/150 (1%) Query: 29 ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88 ++S+++ + ++TS+D L WAR SL + +G ACC +E R+D +RFG PR+ Sbjct: 22 VTSDLS-ENVILTSLDDLHNWARLSSLWPLLYGTACCFIEFAALIGSRFDFDRFGLVPRS 80 Query: 89 SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCD 147 SPRQ+D++IVAGT+T KMA AL R+Y+QMPEP+YVI+MG+C GG + S + VRG D Sbjct: 81 SPRQADLLIVAGTVTMKMAPALVRLYEQMPEPKYVIAMGACTITGGMFSADSTTAVRGVD 140 Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 +++PVD+Y+PGCPP EA+ ++ L+KK+ Sbjct: 141 KLIPVDLYLPGCPPRPEAIFDAVIKLRKKV 170 >gi|320352991|ref|YP_004194330.1| NADH dehydrogenase subunit B [Desulfobulbus propionicus DSM 2032] gi|320121493|gb|ADW17039.1| NADH dehydrogenase subunit B [Desulfobulbus propionicus DSM 2032] Length = 165 Score = 159 bits (401), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 76/140 (54%), Positives = 101/140 (72%), Gaps = 3/140 (2%) Query: 41 TSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMIVA 99 +D+L+ R SL MTFGLACCA+EMM RYD+ RFG R SPRQSDVMIVA Sbjct: 14 AQLDKLLNLGRANSLWPMTFGLACCAIEMMCTGGSRYDISRFGAEVFRPSPRQSDVMIVA 73 Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY--SYSVVRGCDRIVPVDIYVP 157 GT+ K+ A++ +YDQMPEP++VI+MG+CA GG + +Y+VV G D++ PVD+Y+P Sbjct: 74 GTINKKLELAVKTLYDQMPEPKWVIAMGNCAISGGPFKVKENYNVVEGADKLFPVDVYIP 133 Query: 158 GCPPTAEALIYGILLLQKKI 177 GCPP EAL+ GI+ L++KI Sbjct: 134 GCPPRPEALLEGIMALEEKI 153 >gi|114329660|ref|YP_740479.1| NADH-plastoquinone oxidoreductase subunit K [Citrus sinensis] gi|122166179|sp|Q09MH4|NDHK_CITSI RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K gi|113952626|gb|ABI49024.1| NADH-plastoquinone oxidoreductase subunit K [Citrus sinensis] Length = 227 Score = 159 bits (401), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 71/147 (48%), Positives = 102/147 (69%), Gaps = 1/147 (0%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93 T F+ T+ + L W+R SL + +G +CC +E R+D +R+G PR+SPRQ+ Sbjct: 13 TPNSFISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 72 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152 D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++PV Sbjct: 73 DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 132 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179 D+Y+PGCPP EA+I I L+KKI R Sbjct: 133 DVYLPGCPPKPEAVIDAITKLRKKISR 159 >gi|11467814|ref|NP_050865.1| NADH dehydrogenase subunit K [Nephroselmis olivacea] gi|59798437|sp|Q9TKY0|NDHK_NEPOL RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K gi|5880743|gb|AAD54836.1|AF137379_59 subunit K of NADH-ubiquinone oxidoreductase [Nephroselmis olivacea] Length = 237 Score = 159 bits (401), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 74/169 (43%), Positives = 113/169 (66%), Gaps = 2/169 (1%) Query: 10 IISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEM 69 +IS S+ S I+ E+ + ++T+++ L WAR SL + +G +CC +E Sbjct: 2 VISSLSNSQPLNAPVSSSPITQELAN-NLILTTLNDLYNWARLSSLWPLLYGTSCCFIEF 60 Query: 70 MQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSC 129 R+D +RFG PR+SPRQ+D++I AGT+T KMA +L R+Y+QMP+P+YVI+MG+C Sbjct: 61 ACLIGSRFDFDRFGLVPRSSPRQADLIITAGTVTMKMAPSLVRLYEQMPDPKYVIAMGAC 120 Query: 130 ANGGGYYHY-SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 GG + SYS VRG D+++PVD+Y+PGCPP EA+I ++ L+KK+ Sbjct: 121 TITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEAIIDAVIKLRKKV 169 >gi|87300572|ref|ZP_01083414.1| NADH dehydrogenase beta subunit [Synechococcus sp. WH 5701] gi|87284443|gb|EAQ76395.1| NADH dehydrogenase beta subunit [Synechococcus sp. WH 5701] Length = 253 Score = 159 bits (401), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 74/155 (47%), Positives = 109/155 (70%), Gaps = 5/155 (3%) Query: 29 ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88 ++S+++ + ++TS+D L WAR SL + +G ACC +E R+D +RFG PR+ Sbjct: 35 VTSDLS-ENVILTSLDDLHNWARLSSLWPLLYGTACCFIEFAALIGSRFDFDRFGLVPRS 93 Query: 89 SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCD 147 SPRQ+D++I AGT+T KMA AL R+Y+QMPEP+YVI+MG+C GG + S + VRG D Sbjct: 94 SPRQADLLITAGTVTMKMAPALVRLYEQMPEPKYVIAMGACTITGGMFSADSTTAVRGVD 153 Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182 +++PVD+Y+PGCPP EA+ ++ L+KK VGN Sbjct: 154 KLIPVDLYIPGCPPRPEAIFDAVIKLRKK---VGN 185 >gi|290489722|gb|ADD31245.1| NADH-plastoquinone oxidoreductase subunit K protein [Rhododendron simsii] Length = 225 Score = 159 bits (401), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 71/148 (47%), Positives = 103/148 (69%), Gaps = 1/148 (0%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 IT + T+++ L W+R SL + +G +CC +E R+D +R+G PR+SPRQ Sbjct: 12 ITQNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQ 71 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVP 151 +D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++P Sbjct: 72 ADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIP 131 Query: 152 VDIYVPGCPPTAEALIYGILLLQKKIRR 179 VD+Y+PGCPP EA+I I L+KKI R Sbjct: 132 VDVYLPGCPPKPEAVIDAITKLRKKISR 159 >gi|67925382|ref|ZP_00518732.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit [Crocosphaera watsonii WH 8501] gi|67852778|gb|EAM48187.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit [Crocosphaera watsonii WH 8501] Length = 247 Score = 159 bits (401), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 70/152 (46%), Positives = 108/152 (71%), Gaps = 2/152 (1%) Query: 27 SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP 86 S+++ +++ + ++T+VD L WAR SL + +G ACC +E R+D +RFG P Sbjct: 27 SQVTQDLS-ENIILTTVDDLHNWARLSSLWPLLYGTACCFIEFAALIGSRFDFDRFGLVP 85 Query: 87 RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCA-NGGGYYHYSYSVVRG 145 R+SPRQ+D++I AGT+T KMA AL R+Y++MP+P+YVI+MG+C GG + S + VRG Sbjct: 86 RSSPRQADLLITAGTVTMKMAPALVRLYEEMPDPKYVIAMGACTITGGMFSSDSTTAVRG 145 Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 D+++PVD+Y+PGCPP EA+ I+ L+KK+ Sbjct: 146 VDKLIPVDVYIPGCPPRPEAIFDAIIKLRKKV 177 >gi|317968579|ref|ZP_07969969.1| NADH dehydrogenase subunit B [Synechococcus sp. CB0205] Length = 249 Score = 159 bits (401), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 74/155 (47%), Positives = 110/155 (70%), Gaps = 5/155 (3%) Query: 29 ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88 ++S+++ + ++T++D L WAR SL + +G ACC +E R+D +RFG PR+ Sbjct: 35 VTSDLS-ENVILTTLDDLHNWARLSSLWPLLYGTACCFIEFAALIGSRFDFDRFGLVPRS 93 Query: 89 SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCD 147 SPRQ+D++IVAGT+T KMA AL R+Y+QMPEP+YVI+MG+C GG + S + VRG D Sbjct: 94 SPRQADLLIVAGTVTMKMAPALVRLYEQMPEPKYVIAMGACTITGGMFSADSTTAVRGVD 153 Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182 +++PVD+Y+PGCPP EA+ ++ L+KK VGN Sbjct: 154 KLIPVDLYLPGCPPRPEAIFDAVVKLRKK---VGN 185 >gi|307822802|ref|ZP_07653033.1| NADH-quinone oxidoreductase, B subunit [Methylobacter tundripaludum SV96] gi|307736406|gb|EFO07252.1| NADH-quinone oxidoreductase, B subunit [Methylobacter tundripaludum SV96] Length = 212 Score = 159 bits (401), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 74/148 (50%), Positives = 103/148 (69%), Gaps = 2/148 (1%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RAS 89 E + FL ++ +V W ++ S+ FGL+CC VEM A R+D+ RFG R S Sbjct: 22 EEALRRNFLFARLEDMVAWGQSNSVWPFNFGLSCCYVEMATAFTSRHDIARFGSEVIRGS 81 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQ+D+++++GT+ KMA ++R+YDQ+ EPR+VISMGSCAN GG Y YSVV+G D+ Sbjct: 82 PRQADLIVISGTVFRKMAPVVKRLYDQLLEPRWVISMGSCANSGGMYDI-YSVVQGVDKF 140 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKI 177 +PVD+YVPGCPP EAL+ G++LLQ I Sbjct: 141 LPVDVYVPGCPPRPEALLQGLMLLQDAI 168 >gi|220910063|ref|YP_002485374.1| NADH dehydrogenase subunit B [Cyanothece sp. PCC 7425] gi|238065001|sp|B8HLE8|NDHK2_CYAP4 RecName: Full=NAD(P)H-quinone oxidoreductase subunit K 2; AltName: Full=NAD(P)H dehydrogenase I subunit K 2; AltName: Full=NDH-1 subunit K 2; Short=NDH-K 2 gi|219866674|gb|ACL47013.1| NADH-quinone oxidoreductase, B subunit [Cyanothece sp. PCC 7425] Length = 259 Score = 159 bits (401), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 69/143 (48%), Positives = 102/143 (71%), Gaps = 1/143 (0%) Query: 36 KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDV 95 + ++TS+D + WAR S+ + +G ACC +E R+D+ERFG PRASPRQ+D+ Sbjct: 24 ENIILTSLDDIYNWARISSIYPLMYGTACCFIEFAAMIASRFDMERFGMFPRASPRQADL 83 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPVDI 154 +I+AGTLT +MA RR+YDQMPEP+YVI+MG+C GG + S + +RG D+++P+D+ Sbjct: 84 IILAGTLTMQMAVPTRRLYDQMPEPKYVIAMGACMITGGMFSADSPTALRGADKLLPIDV 143 Query: 155 YVPGCPPTAEALIYGILLLQKKI 177 Y+PGCPP EA++ + L+KKI Sbjct: 144 YIPGCPPRPEAILDAVTKLRKKI 166 >gi|95928469|ref|ZP_01311217.1| NADH-quinone oxidoreductase, B subunit [Desulfuromonas acetoxidans DSM 684] gi|95135740|gb|EAT17391.1| NADH-quinone oxidoreductase, B subunit [Desulfuromonas acetoxidans DSM 684] Length = 196 Score = 159 bits (401), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 78/137 (56%), Positives = 101/137 (73%), Gaps = 3/137 (2%) Query: 44 DQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTL 102 D+++ R SL MTFGLACCA+EMM + M R+D+ R+G R SPRQSD+MIVAGT+ Sbjct: 44 DKILNLCRANSLWPMTFGLACCAIEMMCSGMARFDISRYGAEVFRPSPRQSDLMIVAGTV 103 Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYY--HYSYSVVRGCDRIVPVDIYVPGCP 160 KMA A+ +Y+QMP PRYVI++G+CA GG + +Y VV G D+++PVD+YVPGCP Sbjct: 104 NKKMAPAVVTLYEQMPAPRYVIALGNCAISGGPFAVEANYDVVLGVDQLIPVDVYVPGCP 163 Query: 161 PTAEALIYGILLLQKKI 177 P EALI GIL LQ+KI Sbjct: 164 PRPEALIEGILQLQEKI 180 >gi|297837993|ref|XP_002886878.1| NADH dehydrogenase subunit K [Arabidopsis lyrata subsp. lyrata] gi|297332719|gb|EFH63137.1| NADH dehydrogenase subunit K [Arabidopsis lyrata subsp. lyrata] Length = 225 Score = 159 bits (401), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 71/147 (48%), Positives = 103/147 (70%), Gaps = 1/147 (0%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93 T K + T+++ L W+R SL + +G +CC +E R+D +R+G PR+SPRQ+ Sbjct: 13 TKKSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 72 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152 D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++PV Sbjct: 73 DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 132 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179 D+Y+PGCPP EA+I I L+KKI R Sbjct: 133 DVYLPGCPPKPEAVIDAITKLRKKIAR 159 >gi|254432198|ref|ZP_05045901.1| NADH dehydrogenase i chain b or ndhk [Cyanobium sp. PCC 7001] gi|197626651|gb|EDY39210.1| NADH dehydrogenase i chain b or ndhk [Cyanobium sp. PCC 7001] Length = 279 Score = 158 bits (400), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 74/155 (47%), Positives = 110/155 (70%), Gaps = 5/155 (3%) Query: 29 ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88 ++S+++ + ++T++D L WAR SL + +G ACC +E R+D +RFG PR+ Sbjct: 38 VTSDLS-ENVILTTLDDLHNWARLSSLWPLLYGTACCFIEFAALIGSRFDFDRFGLVPRS 96 Query: 89 SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCD 147 SPRQ+D++IVAGT+T KMA AL R+Y+QMPEP+YVI+MG+C GG + S + VRG D Sbjct: 97 SPRQADLLIVAGTVTMKMAPALVRLYEQMPEPKYVIAMGACTITGGMFSADSTTAVRGVD 156 Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182 +++PVD+Y+PGCPP EA+ ++ L+KK VGN Sbjct: 157 KLIPVDLYLPGCPPRPEAIFDAVIKLRKK---VGN 188 >gi|16330876|ref|NP_441604.1| NADH dehydrogenase subunit B [Synechocystis sp. PCC 6803] gi|131406|sp|P19050|NDHK1_SYNY3 RecName: Full=NAD(P)H-quinone oxidoreductase subunit K 1; AltName: Full=NAD(P)H dehydrogenase I subunit K 1; AltName: Full=NDH-1 subunit K 1; Short=NDH-K 1; Flags: Precursor gi|48047|emb|CAA35485.1| unnamed protein product [Synechocystis sp. PCC 6803] gi|1653370|dbj|BAA18284.1| NADH dehydrogenase subunit; NdhK [Synechocystis sp. PCC 6803] Length = 248 Score = 158 bits (400), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 71/155 (45%), Positives = 109/155 (70%), Gaps = 2/155 (1%) Query: 24 ADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFG 83 A S+++ +++ + ++T+VD L WA+ SL + +G ACC +E R+D +RFG Sbjct: 23 ASRSQVTQDLS-ENVILTTVDDLYNWAKLSSLWPLLYGTACCFIEFAALIGSRFDFDRFG 81 Query: 84 FAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCA-NGGGYYHYSYSV 142 PR+SPRQ+D++I AGT+T KMA AL R+Y++MPEP+YVI+MG+C GG + S + Sbjct: 82 LVPRSSPRQADLIITAGTITMKMAPALVRLYEEMPEPKYVIAMGACTITGGMFSSDSTTA 141 Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 VRG D+++PVD+Y+PGCPP EA+ I+ L+KK+ Sbjct: 142 VRGVDKLIPVDVYIPGCPPRPEAIFDAIIKLRKKV 176 >gi|154795217|ref|NP_054940.3| NADH dehydrogenase subunit K [Spinacia oleracea] gi|218512134|sp|Q9M3M0|NDHK_SPIOL RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K Length = 227 Score = 158 bits (400), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 71/149 (47%), Positives = 102/149 (68%), Gaps = 1/149 (0%) Query: 32 EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPR 91 +I + T+ + L W+R SL + +G +CC +E R+D +R+G PRASPR Sbjct: 11 QIAQNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRASPR 70 Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIV 150 Q+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++ Sbjct: 71 QADLILTAGTVTMKMAPSLLRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLI 130 Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRR 179 PVD+Y+PGCPP EA+I I L+KKI R Sbjct: 131 PVDVYLPGCPPKPEAVIDAITKLRKKISR 159 >gi|313199634|ref|YP_004021250.1| no product string in file [Isoetes flaccida] gi|291575363|gb|ADE18076.1| no product string in file [Isoetes flaccida] Length = 250 Score = 158 bits (400), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 71/154 (46%), Positives = 105/154 (68%), Gaps = 1/154 (0%) Query: 27 SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP 86 S + T ++T+ + L WAR SL + +G +CC +E R+D +R+G P Sbjct: 27 SSLLDRTTPNSIVLTTFNDLSNWARLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVP 86 Query: 87 RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRG 145 R+SPRQ+D++I AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG Sbjct: 87 RSSPRQADLIITAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRG 146 Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179 D+++PVD+Y+PGCPP EA+I I+ L+K++ R Sbjct: 147 VDKLIPVDVYLPGCPPKPEAIIDAIVKLRKRVAR 180 >gi|56750378|ref|YP_171079.1| NADH dehydrogenase subunit B [Synechococcus elongatus PCC 6301] gi|81299990|ref|YP_400198.1| NADH dehydrogenase subunit B [Synechococcus elongatus PCC 7942] gi|81596704|sp|Q5N560|NDHK_SYNP6 RecName: Full=NAD(P)H-quinone oxidoreductase subunit K; AltName: Full=NAD(P)H dehydrogenase I subunit K; AltName: Full=NDH-1 subunit K; Short=NDH-K gi|123556951|sp|Q31P08|NDHK_SYNE7 RecName: Full=NAD(P)H-quinone oxidoreductase subunit K; AltName: Full=NAD(P)H dehydrogenase I subunit K; AltName: Full=NDH-1 subunit K; Short=NDH-K gi|56685337|dbj|BAD78559.1| NADH dehydrogenase subunit NdhK [Synechococcus elongatus PCC 6301] gi|81168871|gb|ABB57211.1| NADH-quinone oxidoreductase, B subunit [Synechococcus elongatus PCC 7942] Length = 235 Score = 158 bits (400), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 74/150 (49%), Positives = 104/150 (69%), Gaps = 4/150 (2%) Query: 32 EITH---KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88 EIT + ++T++D L WAR SL + +G ACC +E R+D +RFG PR Sbjct: 17 EITQGLSENVILTTLDDLYNWARLSSLWPLMYGTACCFIEFAALIGSRFDFDRFGLVPRC 76 Query: 89 SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCD 147 SPRQ+D++I AGT+T KMA AL R+Y+QMPEP+YVI+MG+C GG + S + VRG D Sbjct: 77 SPRQADLLITAGTVTMKMAPALVRLYEQMPEPKYVIAMGACTITGGMFSADSTTTVRGVD 136 Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 +++PVD+Y+PGCPP EA+I I+ L+KK+ Sbjct: 137 KLLPVDVYIPGCPPRPEAIIDAIVKLRKKV 166 >gi|53804524|ref|YP_113819.1| NADH dehydrogenase subunit B [Methylococcus capsulatus str. Bath] gi|81682183|sp|Q608X8|NUOB_METCA RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|53758285|gb|AAU92576.1| NADH dehydrogenase I, B subunit [Methylococcus capsulatus str. Bath] Length = 213 Score = 158 bits (400), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 73/148 (49%), Positives = 102/148 (68%), Gaps = 2/148 (1%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RAS 89 E + L +D LV W R S+ FGL+CC VEM A R+D+ RFG RAS Sbjct: 22 EEALRRNILFARLDDLVRWGRKNSIWPFNFGLSCCYVEMATAFTSRFDIARFGSEVIRAS 81 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQ+D+M+++GT+ KMA ++ +YDQ+ EP+++ISMGSCAN GG Y YSVV+G D+ Sbjct: 82 PRQADLMVISGTVFRKMAPVVKHLYDQLLEPKWIISMGSCANSGGMYDI-YSVVQGVDKF 140 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKI 177 +PVD+YVPGCPP EAL+ G+++LQ+ + Sbjct: 141 LPVDVYVPGCPPRPEALLEGLMMLQESV 168 >gi|32399383|emb|CAD28725.1| photosystem II G protein [Calycanthus floridus var. glaucus] Length = 248 Score = 158 bits (400), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 74/174 (42%), Positives = 110/174 (63%), Gaps = 2/174 (1%) Query: 7 NQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCA 66 NQ G+ S +F + T + T+++ L W+R SL + +G +CC Sbjct: 10 NQNQKEGKDSIETVMNSTEFPLLD-RTTQNSVISTTLNDLSNWSRLSSLWPLLYGTSCCF 68 Query: 67 VEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISM 126 +E R+D +R+G PR+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+M Sbjct: 69 IEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAM 128 Query: 127 GSCANGGGYYHY-SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179 G+C GG + SYS VRG D+++PVD+Y+PGCPP EA+I I L+KK+ R Sbjct: 129 GACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKKVSR 182 >gi|284034168|ref|YP_003384099.1| NADH-quinone oxidoreductase subunit B [Kribbella flavida DSM 17836] gi|283813461|gb|ADB35300.1| NADH-quinone oxidoreductase, B subunit [Kribbella flavida DSM 17836] Length = 184 Score = 158 bits (400), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 74/144 (51%), Positives = 102/144 (70%), Gaps = 2/144 (1%) Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95 G L+T+++ L + R SL TFGLACCA+EMM PRYD RFG RASPRQ+D+ Sbjct: 10 GVLLTTIEGLSGYMRKASLWPATFGLACCAIEMMTTGAPRYDAARFGMEVFRASPRQADL 69 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155 MIVAG ++ KMA LR++YDQMP P++V++MG CA+ GG ++ +Y++V+G D +VPVD+Y Sbjct: 70 MIVAGRVSQKMAPVLRQIYDQMPNPKWVLAMGVCASSGGMFN-NYAIVQGVDHVVPVDMY 128 Query: 156 VPGCPPTAEALIYGILLLQKKIRR 179 +PGCPP E L+ L L I+ Sbjct: 129 LPGCPPRPEMLLDAFLKLHDDIQH 152 >gi|254421629|ref|ZP_05035347.1| NADH-quinone oxidoreductase, B subunit subfamily, putative [Synechococcus sp. PCC 7335] gi|196189118|gb|EDX84082.1| NADH-quinone oxidoreductase, B subunit subfamily, putative [Synechococcus sp. PCC 7335] Length = 242 Score = 158 bits (400), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 71/143 (49%), Positives = 101/143 (70%), Gaps = 1/143 (0%) Query: 36 KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDV 95 + ++T+VD L W R SL + +G ACC +E R+D +RFG APRASPRQ+D+ Sbjct: 27 ENVILTTVDDLYNWTRLSSLFPLLYGTACCFIEFAALLGSRFDFDRFGLAPRASPRQADL 86 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPVDI 154 +IVAGT+T KMA AL R+Y+QMP+P YV++MG+C GG + S + +RG D+I+PVD+ Sbjct: 87 IIVAGTVTMKMAPALVRLYEQMPKPAYVMAMGACTITGGMFSADSPTALRGVDKIIPVDV 146 Query: 155 YVPGCPPTAEALIYGILLLQKKI 177 Y+PGCPP EA+ ++ L+KKI Sbjct: 147 YIPGCPPRPEAIFDAVIKLRKKI 169 >gi|50843385|ref|YP_056612.1| NADH dehydrogenase subunit B [Propionibacterium acnes KPA171202] gi|289425667|ref|ZP_06427439.1| NADH dehydrogenase subunit B [Propionibacterium acnes SK187] gi|289426988|ref|ZP_06428707.1| NADH dehydrogenase subunit B [Propionibacterium acnes J165] gi|295131459|ref|YP_003582122.1| NADH-ubiquinone oxidoreductase chain B [Propionibacterium acnes SK137] gi|81611154|sp|Q6A6F9|NUOB_PROAC RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|50840987|gb|AAT83654.1| NADH dehydrogenase I chain B [Propionibacterium acnes KPA171202] gi|289153968|gb|EFD02661.1| NADH dehydrogenase subunit B [Propionibacterium acnes SK187] gi|289159810|gb|EFD07995.1| NADH dehydrogenase subunit B [Propionibacterium acnes J165] gi|291376052|gb|ADD99906.1| NADH-ubiquinone oxidoreductase chain B [Propionibacterium acnes SK137] gi|332676328|gb|AEE73144.1| NADH-quinone oxidoreductase subunit B [Propionibacterium acnes 266] Length = 185 Score = 158 bits (399), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 72/144 (50%), Positives = 108/144 (75%), Gaps = 2/144 (1%) Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95 G ++TS++ +V W R S +T GLACCA+EM+ PR D R+G RASPRQ+D+ Sbjct: 11 GIVMTSMEAIVGWLRKTSFWPLTMGLACCAIEMISYGGPRADAARWGHEVFRASPRQADL 70 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155 MIV+G ++ KMA +R++YDQMPEP++VISMG+CA+ GG ++ +Y+VV+GCD IVPVD+Y Sbjct: 71 MIVSGRVSQKMAPVVRQLYDQMPEPKWVISMGACASSGGIFN-NYAVVQGCDHIVPVDVY 129 Query: 156 VPGCPPTAEALIYGILLLQKKIRR 179 +PGCPP+ + LI + ++++I+ Sbjct: 130 LPGCPPSPDMLIDAVFKIREQIQH 153 >gi|290489714|gb|ADD31241.1| NADH-plastoquinone oxidoreductase subunit K protein [Lonicera japonica] Length = 247 Score = 158 bits (399), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 70/149 (46%), Positives = 103/149 (69%), Gaps = 1/149 (0%) Query: 32 EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPR 91 + T + T+++ L W+R SL + +G +CC +E R+D +R+G PR+SPR Sbjct: 33 QTTQNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPR 92 Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIV 150 Q+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++ Sbjct: 93 QADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLI 152 Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRR 179 PVD+Y+PGCPP EA+I I L+KKI R Sbjct: 153 PVDVYLPGCPPKPEAVIDAITKLRKKISR 181 >gi|333031513|ref|ZP_08459574.1| NAD(P)H-quinone oxidoreductase subunit K [Bacteroides coprosuis DSM 18011] gi|332742110|gb|EGJ72592.1| NAD(P)H-quinone oxidoreductase subunit K [Bacteroides coprosuis DSM 18011] Length = 214 Score = 158 bits (399), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 67/132 (50%), Positives = 96/132 (72%), Gaps = 1/132 (0%) Query: 48 TWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQSDVMIVAGTLTNKM 106 W R+ SL +TF +CC +E M R+D RFGF R SPRQ+D ++VAGT+T+KM Sbjct: 51 NWGRSNSLWPLTFATSCCGIEFMAIGAARHDFARFGFEVARPSPRQADFIMVAGTITDKM 110 Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL 166 A L+R+YDQM +P+YVI+ G+C GG + SY VV+G D+I+PVD+++PGCPP EA+ Sbjct: 111 APVLKRLYDQMADPKYVIACGACTITGGPFKNSYHVVKGIDKILPVDVFIPGCPPRPEAM 170 Query: 167 IYGILLLQKKIR 178 IYG++ LQ+K++ Sbjct: 171 IYGLMQLQRKVK 182 >gi|282855273|ref|ZP_06264605.1| NADH dehydrogenase subunit B [Propionibacterium acnes J139] gi|282581861|gb|EFB87246.1| NADH dehydrogenase subunit B [Propionibacterium acnes J139] Length = 185 Score = 158 bits (399), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 72/144 (50%), Positives = 108/144 (75%), Gaps = 2/144 (1%) Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95 G ++TS++ +V W R S +T GLACCA+EM+ PR D R+G RASPRQ+D+ Sbjct: 11 GIVMTSMEAIVGWLRKTSFWPLTMGLACCAIEMISYGGPRADAARWGHEVFRASPRQADL 70 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155 MIV+G ++ KMA +R++YDQMPEP++VISMG+CA+ GG ++ +Y+VV+GCD IVPVD+Y Sbjct: 71 MIVSGRVSQKMAPVVRQLYDQMPEPKWVISMGACASSGGIFN-NYAVVQGCDHIVPVDVY 129 Query: 156 VPGCPPTAEALIYGILLLQKKIRR 179 +PGCPP+ + LI + ++++I+ Sbjct: 130 LPGCPPSPDMLIDAVFKIREQIQH 153 >gi|328906302|gb|EGG26077.1| NADH dehydrogenase subunit B [Propionibacterium sp. P08] Length = 185 Score = 158 bits (399), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 72/144 (50%), Positives = 108/144 (75%), Gaps = 2/144 (1%) Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95 G ++TS++ +V W R S +T GLACCA+EM+ PR D R+G RASPRQ+D+ Sbjct: 11 GIVMTSMEAIVGWLRKTSFWPLTMGLACCAIEMISYGGPRADAARWGHEVFRASPRQADL 70 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155 MIV+G ++ KMA +R++YDQMPEP++VISMG+CA+ GG ++ +Y+VV+GCD IVPVD+Y Sbjct: 71 MIVSGRVSQKMAPVVRQLYDQMPEPKWVISMGACASSGGIFN-NYAVVQGCDHIVPVDVY 129 Query: 156 VPGCPPTAEALIYGILLLQKKIRR 179 +PGCPP+ + LI + ++++I+ Sbjct: 130 LPGCPPSPDMLIDAVFKIREQIQH 153 >gi|318042790|ref|ZP_07974746.1| NADH dehydrogenase subunit B [Synechococcus sp. CB0101] Length = 241 Score = 158 bits (399), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 76/168 (45%), Positives = 114/168 (67%), Gaps = 4/168 (2%) Query: 11 ISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMM 70 + Q S S V A ++S+++ + ++T++D L WAR SL + +G ACC +E Sbjct: 10 LRDQRSASCNPVAA--PSVTSDLS-ENVILTTLDDLHNWARLSSLWPLLYGTACCFIEFA 66 Query: 71 QASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCA 130 R+D +RFG PR+SPRQ+D++IVAGT+T KMA AL R+Y+QMPEP+YVI+MG+C Sbjct: 67 ALIGSRFDFDRFGLVPRSSPRQADLLIVAGTVTMKMAPALVRLYEQMPEPKYVIAMGACT 126 Query: 131 NGGGYYHY-SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 GG + S + VRG D+++PVD+Y+PGCPP EA+ ++ L+KK+ Sbjct: 127 ITGGMFSADSTTAVRGVDKLIPVDLYLPGCPPRPEAIFDAVIKLRKKV 174 >gi|126657571|ref|ZP_01728727.1| NADH dehydrogenase subunit B [Cyanothece sp. CCY0110] gi|126621275|gb|EAZ91988.1| NADH dehydrogenase subunit B [Cyanothece sp. CCY0110] Length = 247 Score = 158 bits (399), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 69/143 (48%), Positives = 101/143 (70%), Gaps = 1/143 (0%) Query: 36 KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDV 95 + ++T+VD L WAR SL + +G ACC +E R+D +RFG PR+SPRQ+D+ Sbjct: 35 ENIILTTVDDLHNWARLSSLWPLLYGTACCFIEFAALIGSRFDFDRFGLVPRSSPRQADL 94 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCA-NGGGYYHYSYSVVRGCDRIVPVDI 154 +I AGT+T KMA AL R+Y++MP+P+YVI+MG+C GG + S + VRG D+++PVD+ Sbjct: 95 IITAGTITMKMAPALVRLYEEMPDPKYVIAMGACTITGGMFSSDSTTAVRGVDKLIPVDV 154 Query: 155 YVPGCPPTAEALIYGILLLQKKI 177 Y+PGCPP EA+ I+ L+KK+ Sbjct: 155 YIPGCPPRPEAIFDAIIKLRKKV 177 >gi|119491043|ref|ZP_01623201.1| NADH dehydrogenase beta subunit [Lyngbya sp. PCC 8106] gi|119453588|gb|EAW34748.1| NADH dehydrogenase beta subunit [Lyngbya sp. PCC 8106] Length = 241 Score = 158 bits (399), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 72/151 (47%), Positives = 106/151 (70%), Gaps = 2/151 (1%) Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87 +++ E++ + ++T+VD L WAR SL + +G ACC +E R+D +RFG PR Sbjct: 21 QVTQELS-ENVVLTTVDDLYNWARLSSLWPLLYGTACCFIEFAALIGSRFDFDRFGLVPR 79 Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGC 146 +SPRQ+D++I AGT+T K A L R+Y+QMPEP+YVI+MG+C GG + S + VRG Sbjct: 80 SSPRQADLLITAGTITMKYAPVLVRLYEQMPEPKYVIAMGACTITGGMFSMDSTTAVRGV 139 Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 D+++PVD+Y+PGCPP EA+I I+ L+KKI Sbjct: 140 DKLIPVDVYIPGCPPRPEAIIDAIIKLRKKI 170 >gi|51893915|ref|YP_076606.1| NADH dehydrogenase I subunit B [Symbiobacterium thermophilum IAM 14863] gi|81610392|sp|Q67KN6|NUOB2_SYMTH RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName: Full=NADH dehydrogenase I subunit B 2; AltName: Full=NDH-1 subunit B 2 gi|51857604|dbj|BAD41762.1| NADH dehydrogenase I subunit B [Symbiobacterium thermophilum IAM 14863] Length = 182 Score = 158 bits (399), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 75/151 (49%), Positives = 106/151 (70%), Gaps = 1/151 (0%) Query: 29 ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APR 87 + +E G L + +++ W S + FG+ACCA+EMM A +YD+ RFG A R Sbjct: 22 VVNENVIAGKLPDVIKKVLGWGYGNSTWPLGFGIACCAIEMMAACSSKYDIARFGSEAMR 81 Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCD 147 SPRQ+DVMIVAGT+ KMA +RR+YDQM EP++VI+MG+CA+ GG Y +Y+VV G Sbjct: 82 MSPRQADVMIVAGTVNEKMAVVVRRLYDQMSEPKFVIAMGACASNGGPYWDTYNVVDGVH 141 Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 ++VPVD+YVPGCPP EAL+ G++ +Q+ I+ Sbjct: 142 KVVPVDVYVPGCPPRPEALLQGLMEIQEMIK 172 >gi|254415153|ref|ZP_05028915.1| NADH-quinone oxidoreductase, B subunit subfamily, putative [Microcoleus chthonoplastes PCC 7420] gi|196177959|gb|EDX72961.1| NADH-quinone oxidoreductase, B subunit subfamily, putative [Microcoleus chthonoplastes PCC 7420] Length = 247 Score = 158 bits (399), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 75/168 (44%), Positives = 109/168 (64%), Gaps = 2/168 (1%) Query: 12 SGQSSCSLEKVDADFSRIS-SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMM 70 + Q EK+ SR ++ + ++T+VD L WAR SL M +G ACC +E Sbjct: 9 ASQQQQPKEKIINPISRPQVTQNLSENVILTTVDDLYNWARLSSLWPMMYGTACCFIEFA 68 Query: 71 QASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCA 130 R+D +RFG PR SPRQ+D++I AGT+T KM AL R+Y+QMPEP+YV++MG+C Sbjct: 69 AMIGSRFDFDRFGLVPRCSPRQADLIITAGTITMKMTPALVRLYEQMPEPKYVMAMGACT 128 Query: 131 NGGGYYHY-SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 GG + S + VRG D+++PVD+Y+PGCPP EA++ I+ L+KK+ Sbjct: 129 ITGGMFSVDSPTAVRGVDKLIPVDVYIPGCPPRPEAIMDAIVKLRKKV 176 >gi|167391809|ref|YP_001671687.1| NADH dehydrogenase subunit K [Carica papaya] gi|218527885|sp|B1A939|NDHK_CARPA RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K gi|166344136|gb|ABY86786.1| NADH-plastoquinone oxidoreductase subunit K [Carica papaya] Length = 225 Score = 158 bits (399), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 70/147 (47%), Positives = 102/147 (69%), Gaps = 1/147 (0%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93 T + T+++ L W+R SL + +G +CC +E R+D +R+G PR+SPRQ+ Sbjct: 13 TQNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 72 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152 D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++PV Sbjct: 73 DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 132 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179 D+Y+PGCPP EA+I I L+KKI R Sbjct: 133 DVYLPGCPPKPEAVIDAITKLRKKISR 159 >gi|314923993|gb|EFS87824.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL001PA1] gi|314965057|gb|EFT09156.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL082PA2] gi|314983077|gb|EFT27169.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL110PA3] gi|315090610|gb|EFT62586.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL110PA4] gi|315093903|gb|EFT65879.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL060PA1] gi|315104122|gb|EFT76098.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL050PA2] gi|327325785|gb|EGE67577.1| NADH dehydrogenase I, B subunit [Propionibacterium acnes HL103PA1] Length = 188 Score = 158 bits (399), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 72/144 (50%), Positives = 108/144 (75%), Gaps = 2/144 (1%) Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95 G ++TS++ +V W R S +T GLACCA+EM+ PR D R+G RASPRQ+D+ Sbjct: 14 GIVMTSMEAIVGWLRKTSFWPLTMGLACCAIEMISYGGPRADAARWGHEVFRASPRQADL 73 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155 MIV+G ++ KMA +R++YDQMPEP++VISMG+CA+ GG ++ +Y+VV+GCD IVPVD+Y Sbjct: 74 MIVSGRVSQKMAPVVRQLYDQMPEPKWVISMGACASSGGIFN-NYAVVQGCDHIVPVDVY 132 Query: 156 VPGCPPTAEALIYGILLLQKKIRR 179 +PGCPP+ + LI + ++++I+ Sbjct: 133 LPGCPPSPDMLIDAVFKIREQIQH 156 >gi|227874585|ref|ZP_03992748.1| NADH dehydrogenase (quinone) [Mobiluncus mulieris ATCC 35243] gi|269977615|ref|ZP_06184582.1| NADH-quinone oxidoreductase subunit b [Mobiluncus mulieris 28-1] gi|306817869|ref|ZP_07451608.1| NADH-quinone oxidoreductase subunit B [Mobiluncus mulieris ATCC 35239] gi|307701323|ref|ZP_07638344.1| NADH dehydrogenase subunit B [Mobiluncus mulieris FB024-16] gi|227844794|gb|EEJ54940.1| NADH dehydrogenase (quinone) [Mobiluncus mulieris ATCC 35243] gi|269934218|gb|EEZ90785.1| NADH-quinone oxidoreductase subunit b [Mobiluncus mulieris 28-1] gi|304649348|gb|EFM46634.1| NADH-quinone oxidoreductase subunit B [Mobiluncus mulieris ATCC 35239] gi|307613484|gb|EFN92732.1| NADH dehydrogenase subunit B [Mobiluncus mulieris FB024-16] Length = 184 Score = 158 bits (399), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 74/149 (49%), Positives = 112/149 (75%), Gaps = 4/149 (2%) Query: 32 EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASP 90 EI+ KG +D +V +AR+ S+ +T GLACCA+EMM + PR+D+ RFG RASP Sbjct: 7 EISEKGG--KPLDTVVDFARSLSIWPVTMGLACCAIEMMATAAPRFDIARFGSEVFRASP 64 Query: 91 RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150 R +DVM+V+G +++KMA+ +R VYD+M +P++VISMG+CA+ GG ++ +Y++V+GCD +V Sbjct: 65 RHADVMLVSGRVSHKMATIMRNVYDEMADPKWVISMGACASSGGIFN-NYAIVQGCDHVV 123 Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRR 179 PVDIY+PGCPP E L+ +L L+ I++ Sbjct: 124 PVDIYLPGCPPRPEMLLGALLALRDHIKK 152 >gi|73921507|sp|O98679|NDHK_PEA RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K gi|4138389|emb|CAA06191.1| NADH-plastoquinone oxidoreductase subunit, NdhK [Pisum sativum] Length = 227 Score = 158 bits (399), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 70/147 (47%), Positives = 102/147 (69%), Gaps = 1/147 (0%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93 T + T+++ L W+R SL + +G +CC +E R+D +R+G PR+SPRQ+ Sbjct: 13 TKNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 72 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152 D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++PV Sbjct: 73 DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 132 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179 D+Y+PGCPP EA+I I L+KKI R Sbjct: 133 DVYLPGCPPKPEAVIDAITKLRKKISR 159 >gi|313836201|gb|EFS73915.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL037PA2] gi|314971365|gb|EFT15463.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL037PA3] Length = 188 Score = 158 bits (399), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 72/144 (50%), Positives = 108/144 (75%), Gaps = 2/144 (1%) Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95 G ++TS++ +V W R S +T GLACCA+EM+ PR D R+G RASPRQ+D+ Sbjct: 14 GIVMTSMEAIVGWLRKTSFWPLTMGLACCAIEMISYGGPRADAARWGHEVFRASPRQADL 73 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155 MIV+G ++ KMA +R++YDQMPEP++VISMG+CA+ GG ++ +Y+VV+GCD IVPVD+Y Sbjct: 74 MIVSGRVSQKMAPVVRQLYDQMPEPKWVISMGACASSGGIFN-NYAVVQGCDHIVPVDVY 132 Query: 156 VPGCPPTAEALIYGILLLQKKIRR 179 +PGCPP+ + LI + ++++I+ Sbjct: 133 LPGCPPSPDMLIDAVFKIREQIQH 156 >gi|313763285|gb|EFS34649.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL013PA1] gi|313773331|gb|EFS39297.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL074PA1] gi|313793607|gb|EFS41647.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL110PA1] gi|313802882|gb|EFS44095.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL110PA2] gi|313806328|gb|EFS44844.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL087PA2] gi|313810766|gb|EFS48480.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL083PA1] gi|313813675|gb|EFS51389.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL025PA1] gi|313814975|gb|EFS52689.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL059PA1] gi|313819439|gb|EFS57153.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL046PA2] gi|313821245|gb|EFS58959.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL036PA1] gi|313822300|gb|EFS60014.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL036PA2] gi|313826142|gb|EFS63856.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL063PA1] gi|313829369|gb|EFS67083.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL063PA2] gi|313831077|gb|EFS68791.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL007PA1] gi|313833207|gb|EFS70921.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL056PA1] gi|313838150|gb|EFS75864.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL086PA1] gi|314916739|gb|EFS80570.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL005PA4] gi|314919135|gb|EFS82966.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL050PA1] gi|314921215|gb|EFS85046.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL050PA3] gi|314925991|gb|EFS89822.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL036PA3] gi|314930357|gb|EFS94188.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL067PA1] gi|314956140|gb|EFT00536.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL027PA1] gi|314959673|gb|EFT03775.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL002PA1] gi|314962247|gb|EFT06348.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL002PA2] gi|314963239|gb|EFT07339.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL082PA1] gi|314969782|gb|EFT13880.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL037PA1] gi|314973939|gb|EFT18035.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL053PA1] gi|314976867|gb|EFT20962.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL045PA1] gi|314979332|gb|EFT23426.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL072PA2] gi|314984989|gb|EFT29081.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL005PA1] gi|314986337|gb|EFT30429.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL005PA2] gi|314988567|gb|EFT32658.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL005PA3] gi|315079684|gb|EFT51672.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL053PA2] gi|315081012|gb|EFT52988.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL078PA1] gi|315083925|gb|EFT55901.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL027PA2] gi|315085062|gb|EFT57038.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL002PA3] gi|315089491|gb|EFT61467.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL072PA1] gi|315097690|gb|EFT69666.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL038PA1] gi|315098103|gb|EFT70079.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL059PA2] gi|315102679|gb|EFT74655.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL046PA1] gi|315107941|gb|EFT79917.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL030PA1] gi|315108821|gb|EFT80797.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL030PA2] gi|327325710|gb|EGE67507.1| NADH dehydrogenase I, B subunit [Propionibacterium acnes HL096PA3] gi|327330842|gb|EGE72587.1| NADH dehydrogenase I, B subunit [Propionibacterium acnes HL096PA2] gi|327442865|gb|EGE89519.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL043PA2] gi|327445257|gb|EGE91911.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL043PA1] gi|327447757|gb|EGE94411.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL013PA2] gi|327451632|gb|EGE98286.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL087PA3] gi|327452285|gb|EGE98939.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL083PA2] gi|327452502|gb|EGE99156.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL092PA1] gi|328752118|gb|EGF65734.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL025PA2] gi|328755062|gb|EGF68678.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL020PA1] gi|328757010|gb|EGF70626.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL087PA1] gi|328761546|gb|EGF75064.1| NADH dehydrogenase I, B subunit [Propionibacterium acnes HL099PA1] Length = 188 Score = 158 bits (399), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 72/144 (50%), Positives = 108/144 (75%), Gaps = 2/144 (1%) Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95 G ++TS++ +V W R S +T GLACCA+EM+ PR D R+G RASPRQ+D+ Sbjct: 14 GIVMTSMEAIVGWLRKTSFWPLTMGLACCAIEMISYGGPRADAARWGHEVFRASPRQADL 73 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155 MIV+G ++ KMA +R++YDQMPEP++VISMG+CA+ GG ++ +Y+VV+GCD IVPVD+Y Sbjct: 74 MIVSGRVSQKMAPVVRQLYDQMPEPKWVISMGACASSGGIFN-NYAVVQGCDHIVPVDVY 132 Query: 156 VPGCPPTAEALIYGILLLQKKIRR 179 +PGCPP+ + LI + ++++I+ Sbjct: 133 LPGCPPSPDMLIDAVFKIREQIQH 156 >gi|172036678|ref|YP_001803179.1| NADH dehydrogenase subunit B [Cyanothece sp. ATCC 51142] gi|218527887|sp|B1WZG1|NDHK_CYAA5 RecName: Full=NAD(P)H-quinone oxidoreductase subunit K; AltName: Full=NAD(P)H dehydrogenase I subunit K; AltName: Full=NDH-1 subunit K; Short=NDH-K gi|171698132|gb|ACB51113.1| NADH dehydrogenase subunit K [Cyanothece sp. ATCC 51142] Length = 247 Score = 158 bits (399), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 69/143 (48%), Positives = 101/143 (70%), Gaps = 1/143 (0%) Query: 36 KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDV 95 + ++T+VD L WAR SL + +G ACC +E R+D +RFG PR+SPRQ+D+ Sbjct: 35 ENIILTTVDDLHNWARLSSLWPLLYGTACCFIEFAALIGSRFDFDRFGLVPRSSPRQADL 94 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCA-NGGGYYHYSYSVVRGCDRIVPVDI 154 +I AGT+T KMA AL R+Y++MP+P+YVI+MG+C GG + S + VRG D+++PVD+ Sbjct: 95 IITAGTITMKMAPALVRLYEEMPDPKYVIAMGACTITGGMFSSDSTTAVRGVDKLIPVDV 154 Query: 155 YVPGCPPTAEALIYGILLLQKKI 177 Y+PGCPP EA+ I+ L+KK+ Sbjct: 155 YIPGCPPRPEAIFDAIIKLRKKV 177 >gi|332702769|ref|ZP_08422857.1| NAD(P)H-quinone oxidoreductase subunit K [Desulfovibrio africanus str. Walvis Bay] gi|332552918|gb|EGJ49962.1| NAD(P)H-quinone oxidoreductase subunit K [Desulfovibrio africanus str. Walvis Bay] Length = 179 Score = 158 bits (399), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 75/136 (55%), Positives = 100/136 (73%), Gaps = 3/136 (2%) Query: 45 QLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLT 103 Q + R SL MTFGLACCA+EMM +MPR+D RFG R SPRQSD+M+VAGT++ Sbjct: 26 QFLDVCRAMSLWPMTFGLACCAIEMMAMTMPRFDASRFGAEVFRPSPRQSDLMLVAGTVS 85 Query: 104 NKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY--SYSVVRGCDRIVPVDIYVPGCPP 161 NKMA A+ R+Y+QMP P+YVI++G+CA GG + + Y +V G D+++PVD+YVPGCPP Sbjct: 86 NKMAQAVVRLYEQMPAPKYVIAIGNCAISGGPFLFKGQYGIVEGIDKLIPVDVYVPGCPP 145 Query: 162 TAEALIYGILLLQKKI 177 EA + G+ LQ+KI Sbjct: 146 RPEAFLEGLFKLQEKI 161 >gi|289065093|ref|YP_003433979.1| NADH-plastoquinone oxidoreductase subunit K [Typha latifolia] gi|281371776|gb|ADA63703.1| NADH-plastoquinone oxidoreductase subunit K [Typha latifolia] Length = 255 Score = 158 bits (399), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 71/149 (47%), Positives = 102/149 (68%), Gaps = 1/149 (0%) Query: 32 EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPR 91 E T + T+ + L W+R SL + +G +CC +E R+D +R+G PR+SPR Sbjct: 33 ETTPNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPR 92 Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIV 150 Q+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++ Sbjct: 93 QADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLI 152 Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRR 179 PVD+Y+PGCPP EA+I I L+KKI R Sbjct: 153 PVDVYLPGCPPKPEAVIDAITKLRKKISR 181 >gi|256396791|ref|YP_003118355.1| NADH-quinone oxidoreductase subunit beta [Catenulispora acidiphila DSM 44928] gi|256363017|gb|ACU76514.1| NADH-quinone oxidoreductase, B subunit [Catenulispora acidiphila DSM 44928] Length = 184 Score = 158 bits (399), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 78/149 (52%), Positives = 105/149 (70%), Gaps = 2/149 (1%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RAS 89 E GFL+T+V+ L + R S+ TFGLACCA+EMM RYDL RFG A+ Sbjct: 4 EEKLPAGFLLTTVEGLAGYMRKSSVWPATFGLACCAIEMMATGAGRYDLARFGMERFSAT 63 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQ+D+MIVAG ++ KMA LR+VYDQM P++VI+MG CA+ GG ++ +Y++V+G D I Sbjct: 64 PRQADLMIVAGRVSQKMAPVLRQVYDQMANPKWVIAMGVCASSGGMFN-NYAIVQGVDHI 122 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIR 178 VPVDIY+PGCPP E L+ IL L ++I+ Sbjct: 123 VPVDIYLPGCPPRPEMLLDAILKLHEQIQ 151 >gi|295136982|ref|YP_003587528.1| NADH dehydrogenase subunit K [Pisum sativum] gi|293338554|gb|ADE43527.1| NADH dehydrogenase subunit K [Pisum sativum] Length = 227 Score = 158 bits (399), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 70/147 (47%), Positives = 102/147 (69%), Gaps = 1/147 (0%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93 T + T+++ L W+R SL + +G +CC +E R+D +R+G PR+SPRQ+ Sbjct: 13 TKNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 72 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152 D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++PV Sbjct: 73 DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 132 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179 D+Y+PGCPP EA+I I L+KKI R Sbjct: 133 DVYLPGCPPKPEAVIDAITKLRKKISR 159 >gi|197359657|gb|ACH69871.1| NADH-plastoquinone oxidoreductase subunit K [Aneura sp. Wickett 473] Length = 231 Score = 158 bits (399), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 72/158 (45%), Positives = 106/158 (67%), Gaps = 2/158 (1%) Query: 23 DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82 D F +T ++T+++ WAR SL + +G +CC +E R+D +R+ Sbjct: 3 DTKFHPFDKTVTD-SIILTTLNDFSNWARLSSLWPLLYGTSCCFIEFASLIGSRFDFDRY 61 Query: 83 GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYS 141 G PR+SPRQ+D++I AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SY+ Sbjct: 62 GLVPRSSPRQADLVITAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYT 121 Query: 142 VVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179 VRG D+++PVDIY+PGCPP EA+I ++ L+KKI R Sbjct: 122 TVRGVDKLIPVDIYLPGCPPRPEAIIDAVIKLRKKIAR 159 >gi|154795237|ref|YP_740654.2| NADH-plastoquinone oxidoreductase subunit K [Nandina domestica] gi|218527960|sp|Q09FV7|NDHK_NANDO RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K Length = 225 Score = 158 bits (399), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 70/148 (47%), Positives = 102/148 (68%), Gaps = 1/148 (0%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 IT + T+ + L W+R SL + +G +CC +E R+D +R+G PR+SPRQ Sbjct: 12 ITQNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQ 71 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVP 151 +D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++P Sbjct: 72 ADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIP 131 Query: 152 VDIYVPGCPPTAEALIYGILLLQKKIRR 179 VD+Y+PGCPP EA+I I L+KK+ R Sbjct: 132 VDVYLPGCPPKPEAVIDAITKLRKKVSR 159 >gi|124025086|ref|YP_001014202.1| NADH dehydrogenase subunit B [Prochlorococcus marinus str. NATL1A] gi|218527917|sp|A2C0C7|NDHK_PROM1 RecName: Full=NAD(P)H-quinone oxidoreductase subunit K; AltName: Full=NAD(P)H dehydrogenase I subunit K; AltName: Full=NDH-1 subunit K; Short=NDH-K gi|123960154|gb|ABM74937.1| putative respiratory-chain NADH dehydrogenase subunit [Prochlorococcus marinus str. NATL1A] Length = 249 Score = 158 bits (399), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 69/143 (48%), Positives = 102/143 (71%), Gaps = 1/143 (0%) Query: 36 KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDV 95 + ++TS++ L WAR SL + +G ACC +E R+D +RFG PR+SPRQ+D+ Sbjct: 37 ENIILTSLEDLHNWARLSSLWPLLYGTACCFIEFAALIGSRFDFDRFGLVPRSSPRQADL 96 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPVDI 154 +IVAGT+T KMA AL R+Y+QMP+P+YVI+MG+C GG + S + VRG D+++PVD+ Sbjct: 97 LIVAGTVTMKMAPALVRLYEQMPDPKYVIAMGACTITGGMFSADSTTAVRGVDKLIPVDL 156 Query: 155 YVPGCPPTAEALIYGILLLQKKI 177 Y+PGCPP EA+ ++ L+KK+ Sbjct: 157 YLPGCPPRPEAIFDAVIKLRKKV 179 >gi|7636113|emb|CAB88733.1| NADH dehydrogenase 32kDa subunit [Spinacia oleracea] Length = 281 Score = 158 bits (399), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 71/149 (47%), Positives = 102/149 (68%), Gaps = 1/149 (0%) Query: 32 EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPR 91 +I + T+ + L W+R SL + +G +CC +E R+D +R+G PRASPR Sbjct: 65 QIAQNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRASPR 124 Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIV 150 Q+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++ Sbjct: 125 QADLILTAGTVTMKMAPSLLRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLI 184 Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRR 179 PVD+Y+PGCPP EA+I I L+KKI R Sbjct: 185 PVDVYLPGCPPKPEAVIDAITKLRKKISR 213 >gi|72383495|ref|YP_292850.1| NADH dehydrogenase subunit B [Prochlorococcus marinus str. NATL2A] gi|123621504|sp|Q46M05|NDHK_PROMT RecName: Full=NAD(P)H-quinone oxidoreductase subunit K; AltName: Full=NAD(P)H dehydrogenase I subunit K; AltName: Full=NDH-1 subunit K; Short=NDH-K gi|72003345|gb|AAZ59147.1| NADH dehydrogenase subunit B [Prochlorococcus marinus str. NATL2A] Length = 249 Score = 158 bits (399), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 69/143 (48%), Positives = 102/143 (71%), Gaps = 1/143 (0%) Query: 36 KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDV 95 + ++TS++ L WAR SL + +G ACC +E R+D +RFG PR+SPRQ+D+ Sbjct: 37 ENIILTSLEDLHNWARLSSLWPLLYGTACCFIEFAALIGSRFDFDRFGLVPRSSPRQADL 96 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPVDI 154 +IVAGT+T KMA AL R+Y+QMP+P+YVI+MG+C GG + S + VRG D+++PVD+ Sbjct: 97 LIVAGTVTMKMAPALVRLYEQMPDPKYVIAMGACTITGGMFSADSTTAVRGVDKLIPVDL 156 Query: 155 YVPGCPPTAEALIYGILLLQKKI 177 Y+PGCPP EA+ ++ L+KK+ Sbjct: 157 YLPGCPPRPEAIFDAVIKLRKKV 179 >gi|81176254|ref|YP_398333.1| NADH dehydrogenase subunit K [Lactuca sativa] gi|122212029|sp|Q332X4|NDHK_LACSA RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K gi|78675172|dbj|BAE47598.1| NAD(P)H-quinone oxidoreductase chain K [Lactuca sativa] gi|88656987|gb|ABD47237.1| NADH-plastoquinone oxidoreductase subunit K [Lactuca sativa] Length = 225 Score = 158 bits (399), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 70/147 (47%), Positives = 102/147 (69%), Gaps = 1/147 (0%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93 T + T+++ L W+R SL + +G +CC +E R+D +R+G PR+SPRQ+ Sbjct: 13 TQNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 72 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152 D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++PV Sbjct: 73 DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 132 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179 D+Y+PGCPP EA+I I L+KKI R Sbjct: 133 DVYLPGCPPKPEAIIDAITKLRKKISR 159 >gi|91214129|ref|YP_538751.1| NADH dehydrogenase subunit K [Glycine max] gi|88984614|sp|P31175|NDHK_SOYBN RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K gi|83595730|gb|ABC25111.1| NADH-plastoquinone oxidoreductase subunit K [Glycine max] Length = 212 Score = 158 bits (399), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 70/149 (46%), Positives = 103/149 (69%), Gaps = 1/149 (0%) Query: 32 EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPR 91 + T + T+++ L W+R SL + +G +CC +E R+D +R+G PR+SPR Sbjct: 11 QTTKNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPR 70 Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIV 150 Q+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++ Sbjct: 71 QADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLI 130 Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRR 179 PVD+Y+PGCPP EA+I I L+KKI R Sbjct: 131 PVDVYLPGCPPKPEAIIDAITKLRKKISR 159 >gi|14423817|sp|Q9MUR0|NDHK_MESVI RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K gi|7259539|gb|AAF43840.1|AF166114_52 subunit K of NADH-ubiquinone oxidoreductase [Mesostigma viride] Length = 247 Score = 157 bits (398), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 69/141 (48%), Positives = 101/141 (71%), Gaps = 1/141 (0%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 ++T+++ L WAR SL + +G +CC +E R+D +RFG PR SPRQ+D++I Sbjct: 38 LILTTLNDLYNWARLSSLWPLLYGTSCCFIEFACLLGSRFDFDRFGLVPRCSPRQADLII 97 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPVDIYV 156 AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++PVD+Y+ Sbjct: 98 TAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYL 157 Query: 157 PGCPPTAEALIYGILLLQKKI 177 PGCPP EA+I ++ L+KK+ Sbjct: 158 PGCPPKPEAIIDAVIKLRKKV 178 >gi|314927636|gb|EFS91467.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL044PA1] Length = 188 Score = 157 bits (398), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 72/144 (50%), Positives = 108/144 (75%), Gaps = 2/144 (1%) Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95 G ++TS++ +V W R S +T GLACCA+EM+ PR D R+G RASPRQ+D+ Sbjct: 14 GIVMTSMEAIVGWLRKTSFWPLTMGLACCAIEMISYGGPRADAARWGHEVFRASPRQADL 73 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155 MIV+G ++ KMA +R++YDQMPEP++VISMG+CA+ GG ++ +Y+VV+GCD IVPVD+Y Sbjct: 74 MIVSGRVSQKMAPVVRQLYDQMPEPKWVISMGACASSGGIFN-NYAVVQGCDHIVPVDVY 132 Query: 156 VPGCPPTAEALIYGILLLQKKIRR 179 +PGCPP+ + LI + ++++I+ Sbjct: 133 LPGCPPSPDMLIDAVFKIREQIQH 156 >gi|327333123|gb|EGE74850.1| NADH dehydrogenase I, B subunit [Propionibacterium acnes HL097PA1] Length = 188 Score = 157 bits (398), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 72/144 (50%), Positives = 108/144 (75%), Gaps = 2/144 (1%) Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95 G ++TS++ +V W R S +T GLACCA+EM+ PR D R+G RASPRQ+D+ Sbjct: 14 GIVMTSMEAIVGWLRKTSFWPLTMGLACCAIEMISYGGPRADAARWGHEVFRASPRQADL 73 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155 MIV+G ++ KMA +R++YDQMPEP++VISMG+CA+ GG ++ +Y+VV+GCD IVPVD+Y Sbjct: 74 MIVSGRVSQKMAPVVRQLYDQMPEPKWVISMGACASSGGIFN-NYAVVQGCDHIVPVDVY 132 Query: 156 VPGCPPTAEALIYGILLLQKKIRR 179 +PGCPP+ + LI + ++++I+ Sbjct: 133 LPGCPPSPDMLIDAVFKIREQIQH 156 >gi|300869242|ref|ZP_07113836.1| NAD(P)H-quinone oxidoreductase subunit K [Oscillatoria sp. PCC 6506] gi|300332787|emb|CBN59034.1| NAD(P)H-quinone oxidoreductase subunit K [Oscillatoria sp. PCC 6506] Length = 240 Score = 157 bits (398), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 73/151 (48%), Positives = 106/151 (70%), Gaps = 2/151 (1%) Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87 I+S+++ + ++T+VD L WAR SL + +G ACC +E R+D +RFG PR Sbjct: 20 EITSQLS-ENVILTTVDDLYNWARLSSLWPLLYGTACCFIEFAALIGSRFDFDRFGLVPR 78 Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGC 146 +SPRQ+D++I AGT+T K A L R+Y+QMPEP+YVI+MG+C GG + S + VRG Sbjct: 79 SSPRQADLIITAGTITMKYAPILVRLYEQMPEPKYVIAMGACTITGGMFSMDSPTAVRGV 138 Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 D+++PVD+Y+PGCPP EA+I I+ L+KKI Sbjct: 139 DKLIPVDVYIPGCPPRPEAIIDAIIKLRKKI 169 >gi|218527950|sp|Q0IDJ3|NDHK_SYNS3 RecName: Full=NAD(P)H-quinone oxidoreductase subunit K; AltName: Full=NAD(P)H dehydrogenase I subunit K; AltName: Full=NDH-1 subunit K; Short=NDH-K Length = 253 Score = 157 bits (398), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 74/165 (44%), Positives = 109/165 (66%), Gaps = 1/165 (0%) Query: 14 QSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQAS 73 ++SC A+ S + + ++TS+D L WAR SL + +G ACC +E Sbjct: 18 EASCGPVGGAAEGSPTVTNDLSENVILTSLDDLHNWARLSSLWPLLYGTACCFIEFAALL 77 Query: 74 MPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGG 133 R+D +RFG PR+SPRQ+D++IVAGT+T KM AL R+Y+QMPEP+YVI+MG+C G Sbjct: 78 GSRFDFDRFGLVPRSSPRQADLLIVAGTVTMKMGPALVRLYEQMPEPKYVIAMGACTITG 137 Query: 134 GYYHY-SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 G + S + VRG D+++PVD+Y+PGCPP EA+ ++ L+KK+ Sbjct: 138 GMFSADSTTAVRGVDKLIPVDLYLPGCPPRPEAIFDAVIKLRKKV 182 >gi|113954408|ref|YP_729479.1| NADH dehydrogenase subunit B [Synechococcus sp. CC9311] gi|113881759|gb|ABI46717.1| NADH dehydrogenase I chain B or NdhK [Synechococcus sp. CC9311] Length = 259 Score = 157 bits (398), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 74/165 (44%), Positives = 109/165 (66%), Gaps = 1/165 (0%) Query: 14 QSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQAS 73 ++SC A+ S + + ++TS+D L WAR SL + +G ACC +E Sbjct: 24 EASCGPVGGAAEGSPTVTNDLSENVILTSLDDLHNWARLSSLWPLLYGTACCFIEFAALL 83 Query: 74 MPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGG 133 R+D +RFG PR+SPRQ+D++IVAGT+T KM AL R+Y+QMPEP+YVI+MG+C G Sbjct: 84 GSRFDFDRFGLVPRSSPRQADLLIVAGTVTMKMGPALVRLYEQMPEPKYVIAMGACTITG 143 Query: 134 GYYHY-SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 G + S + VRG D+++PVD+Y+PGCPP EA+ ++ L+KK+ Sbjct: 144 GMFSADSTTAVRGVDKLIPVDLYLPGCPPRPEAIFDAVIKLRKKV 188 >gi|281190728|ref|YP_003330965.1| NADH dehydrogenase subunit K [Parthenium argentatum] gi|269924841|gb|ACZ52714.1| NADH dehydrogenase subunit K [Parthenium argentatum] Length = 225 Score = 157 bits (398), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 70/147 (47%), Positives = 102/147 (69%), Gaps = 1/147 (0%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93 T + T+++ L W+R SL + +G +CC +E R+D +R+G PR+SPRQ+ Sbjct: 13 TQNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 72 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152 D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++PV Sbjct: 73 DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 132 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179 D+Y+PGCPP EA+I I L+KKI R Sbjct: 133 DVYLPGCPPKPEAIIDAITKLRKKISR 159 >gi|193237704|dbj|BAG50114.1| NADH dehydrogenase 27 kD subunit [Takakia lepidozioides] Length = 259 Score = 157 bits (398), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 69/143 (48%), Positives = 100/143 (69%), Gaps = 1/143 (0%) Query: 36 KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDV 95 ++T+ + WAR SL + +G +CC +E R+D +R+G PR+SPRQ+D+ Sbjct: 36 NSIILTTFNDFSNWARLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADL 95 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPVDI 154 +I AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++PVDI Sbjct: 96 VITAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDI 155 Query: 155 YVPGCPPTAEALIYGILLLQKKI 177 Y+PGCPP EA+I I+ L+KK+ Sbjct: 156 YLPGCPPKPEAIIDAIIKLRKKV 178 >gi|193237723|dbj|BAG50130.1| NADH dehydrogenase 27 kD subunit [Takakia lepidozioides] Length = 257 Score = 157 bits (398), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 69/143 (48%), Positives = 100/143 (69%), Gaps = 1/143 (0%) Query: 36 KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDV 95 ++T+ + WAR SL + +G +CC +E R+D +R+G PR+SPRQ+D+ Sbjct: 36 NSIILTTFNDFSNWARLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADL 95 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPVDI 154 +I AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++PVDI Sbjct: 96 VITAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDI 155 Query: 155 YVPGCPPTAEALIYGILLLQKKI 177 Y+PGCPP EA+I I+ L+KK+ Sbjct: 156 YLPGCPPKPEAIIDAIIKLRKKV 178 >gi|183217745|ref|YP_001837364.1| NADH dehydrogenase subunit K [Guizotia abyssinica] gi|218527890|sp|B2LMJ7|NDHK_GUIAB RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K gi|179366260|gb|ACB86531.1| NADH dehydrogenase subunit K [Guizotia abyssinica] Length = 225 Score = 157 bits (398), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 70/147 (47%), Positives = 102/147 (69%), Gaps = 1/147 (0%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93 T + T+++ L W+R SL + +G +CC +E R+D +R+G PR+SPRQ+ Sbjct: 13 TQNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 72 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152 D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++PV Sbjct: 73 DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 132 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179 D+Y+PGCPP EA+I I L+KKI R Sbjct: 133 DVYLPGCPPKPEAIIDAITKLRKKISR 159 >gi|301059635|ref|ZP_07200544.1| NADH dehydrogenase subunit B [delta proteobacterium NaphS2] gi|300446281|gb|EFK10137.1| NADH dehydrogenase subunit B [delta proteobacterium NaphS2] Length = 176 Score = 157 bits (398), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 77/137 (56%), Positives = 101/137 (73%), Gaps = 3/137 (2%) Query: 44 DQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTL 102 ++L R SL MTFGLACCA+EMM M R+DL RFG R SPRQSD+MIVAGT+ Sbjct: 25 EKLQNVCRAMSLWPMTFGLACCAIEMMSVGMARFDLARFGAEVFRPSPRQSDLMIVAGTV 84 Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY--SYSVVRGCDRIVPVDIYVPGCP 160 T+K+A A+ R+Y+QMP P++VI+MG+CA GG + + Y+V+ G D+I+PVD+YVPGCP Sbjct: 85 THKLAPAIERLYEQMPAPKWVIAMGNCAISGGPFKFPGQYAVLEGVDKIIPVDVYVPGCP 144 Query: 161 PTAEALIYGILLLQKKI 177 EAL+ G+ LQKKI Sbjct: 145 ARPEALLEGLFELQKKI 161 >gi|126165911|ref|YP_358680.2| NADH dehydrogenase subunit K [Nicotiana sylvestris] gi|126165916|ref|NP_054503.2| NADH dehydrogenase subunit K [Nicotiana tabacum] Length = 247 Score = 157 bits (398), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 70/147 (47%), Positives = 102/147 (69%), Gaps = 1/147 (0%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93 T + T+++ L W+R SL + +G +CC +E R+D +R+G PR+SPRQ+ Sbjct: 35 TQNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 94 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152 D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++PV Sbjct: 95 DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 154 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179 D+Y+PGCPP EA+I I L+KKI R Sbjct: 155 DVYLPGCPPKPEAVIDAITKLRKKISR 181 >gi|313199706|ref|YP_004021320.1| NADH-plastoquinone oxidoreductase subunit K [Theobroma cacao] gi|309321270|gb|ADO64813.1| NADH-plastoquinone oxidoreductase subunit K [Theobroma cacao] gi|328924787|gb|ADO64894.2| NADH-plastoquinone oxidoreductase subunit K [Theobroma cacao] Length = 225 Score = 157 bits (398), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 70/147 (47%), Positives = 102/147 (69%), Gaps = 1/147 (0%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93 T + T+++ L W+R SL + +G +CC +E R+D +R+G PR+SPRQ+ Sbjct: 13 TQNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 72 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152 D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++PV Sbjct: 73 DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 132 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179 D+Y+PGCPP EA+I I L+KKI R Sbjct: 133 DVYLPGCPPKPEAVIDAITKLRKKISR 159 >gi|94502495|ref|YP_588121.1| NADH dehydrogenase subunit K [Helianthus annuus] gi|122179574|sp|Q1KXV5|NDHK_HELAN RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K gi|88656899|gb|ABD47150.1| NADH-plastoquinone oxidoreductase subunit K [Helianthus annuus] Length = 225 Score = 157 bits (398), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 70/147 (47%), Positives = 102/147 (69%), Gaps = 1/147 (0%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93 T + T+++ L W+R SL + +G +CC +E R+D +R+G PR+SPRQ+ Sbjct: 13 TQNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 72 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152 D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++PV Sbjct: 73 DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 132 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179 D+Y+PGCPP EA+I I L+KKI R Sbjct: 133 DVYLPGCPPKPEAIIDAITKLRKKISR 159 >gi|218511714|sp|P06409|NDHK_TOBAC RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K gi|218527957|sp|Q3C1J8|NDHK_NICSY RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K Length = 225 Score = 157 bits (398), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 70/147 (47%), Positives = 102/147 (69%), Gaps = 1/147 (0%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93 T + T+++ L W+R SL + +G +CC +E R+D +R+G PR+SPRQ+ Sbjct: 13 TQNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 72 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152 D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++PV Sbjct: 73 DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 132 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179 D+Y+PGCPP EA+I I L+KKI R Sbjct: 133 DVYLPGCPPKPEAVIDAITKLRKKISR 159 >gi|297616443|ref|YP_003701602.1| NADH-quinone oxidoreductase subunit beta [Syntrophothermus lipocalidus DSM 12680] gi|297144280|gb|ADI01037.1| NADH-quinone oxidoreductase, B subunit [Syntrophothermus lipocalidus DSM 12680] Length = 160 Score = 157 bits (398), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 70/146 (47%), Positives = 103/146 (70%), Gaps = 1/146 (0%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQ 92 T +VT+++++ W R+ S +T+G CC +EMM A R+D+ R+G+ RASPRQ Sbjct: 5 TGPNIIVTTLEKIWNWGRSRSFWPLTYGCNCCPIEMMAAGAARFDIARYGYEVFRASPRQ 64 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 +D++IVAG +T KM + RV+ QMPEP++V++MG+CA GG + YSV+ GCD +PV Sbjct: 65 ADLLIVAGPVTLKMKPVVERVWAQMPEPKWVLAMGNCATSGGPFKDGYSVLPGCDSFLPV 124 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIR 178 D+YVPGCPP EAL +G+L L+KK+ Sbjct: 125 DVYVPGCPPRPEALFHGLLELKKKVE 150 >gi|154795219|ref|YP_740121.2| NADH-plastoquinone oxidoreductase subunit K [Daucus carota] gi|218527898|sp|Q0G9V8|NDHK_DAUCA RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K Length = 225 Score = 157 bits (397), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 70/147 (47%), Positives = 101/147 (68%), Gaps = 1/147 (0%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93 T + T+ + L W+R SL + +G +CC +E R+D +R+G PR+SPRQ+ Sbjct: 13 TQNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 72 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152 D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++PV Sbjct: 73 DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTISGGMFSTDSYSTVRGVDKLIPV 132 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179 D+Y+PGCPP EA+I I L+KKI R Sbjct: 133 DVYLPGCPPKPEAVIDAITKLRKKISR 159 >gi|139390352|ref|YP_001122950.1| photosystem II G protein [Aethionema cordifolium] gi|218527879|sp|A4QJB9|NDHK_AETCO RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K gi|134286145|dbj|BAF49774.1| photosystem II G protein [Aethionema cordifolium] Length = 229 Score = 157 bits (397), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 70/147 (47%), Positives = 102/147 (69%), Gaps = 1/147 (0%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93 T + T+++ L W+R SL + +G +CC +E R+D +R+G PR+SPRQ+ Sbjct: 13 TKNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 72 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152 D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++PV Sbjct: 73 DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 132 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179 D+Y+PGCPP EA+I I L+KKI R Sbjct: 133 DVYLPGCPPKPEAVIDAITKLRKKIAR 159 >gi|218527895|sp|Q49KZ4|NDHK_EUCGG RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K Length = 225 Score = 157 bits (397), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 70/147 (47%), Positives = 102/147 (69%), Gaps = 1/147 (0%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93 T + T+++ L W+R SL + +G +CC +E R+D +R+G PR+SPRQ+ Sbjct: 13 TQNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 72 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152 D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++PV Sbjct: 73 DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 132 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179 D+Y+PGCPP EA+I I L+KKI R Sbjct: 133 DVYLPGCPPKPEAVIDAITKLRKKIAR 159 >gi|153012225|ref|YP_001381740.1| NADH-plastoquinone oxidoreductase subunit K [Medicago truncatula] Length = 235 Score = 157 bits (397), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 70/147 (47%), Positives = 102/147 (69%), Gaps = 1/147 (0%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93 T + T+++ L W+R SL + +G +CC +E R+D +R+G PR+SPRQ+ Sbjct: 21 TKNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 80 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152 D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++PV Sbjct: 81 DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 140 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179 D+Y+PGCPP EA+I I L+KKI R Sbjct: 141 DVYLPGCPPKPEAVIDAITKLRKKISR 167 >gi|139389646|ref|YP_001123203.1| photosystem II G protein [Arabis hirsuta] gi|218527883|sp|A4QK22|NDHK_ARAHI RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K gi|134286401|dbj|BAF50027.1| photosystem II G protein [Arabis hirsuta] Length = 225 Score = 157 bits (397), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 70/147 (47%), Positives = 102/147 (69%), Gaps = 1/147 (0%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93 T + T+++ L W+R SL + +G +CC +E R+D +R+G PR+SPRQ+ Sbjct: 13 TKNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 72 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152 D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++PV Sbjct: 73 DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 132 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179 D+Y+PGCPP EA+I I L+KKI R Sbjct: 133 DVYLPGCPPKPEAVIDAITKLRKKIAR 159 >gi|1173548|gb|AAC44353.1| NADH dehydrogenase type 1 subunit [Nostoc sp. PCC 7120] Length = 245 Score = 157 bits (397), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 70/143 (48%), Positives = 101/143 (70%), Gaps = 1/143 (0%) Query: 36 KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDV 95 + ++T+VD L WAR SL + FG ACC +E R+D +RFG PR+SPRQ+D+ Sbjct: 30 ENVILTTVDDLYNWARLSSLWPLLFGTACCFIEFAALIGSRFDFDRFGLIPRSSPRQADL 89 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPVDI 154 +I AGT+T KMA + R+Y++MPEP+YVI+MG+C GG + S + VRG D+++PVD+ Sbjct: 90 IITAGTITMKMAPQMVRLYEKMPEPKYVIAMGACTITGGMFSVESPTAVRGVDKLIPVDV 149 Query: 155 YVPGCPPTAEALIYGILLLQKKI 177 Y+PGCPP EA+I ++ L+KKI Sbjct: 150 YLPGCPPRPEAIIDAMIKLRKKI 172 >gi|323149086|ref|YP_004222650.1| NADH-plastoquinone oxidoreductase subunit K [Anthriscus cerefolium] gi|289645579|gb|ADD13642.1| NADH-plastoquinone oxidoreductase subunit K [Anthriscus cerefolium] Length = 225 Score = 157 bits (397), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 70/147 (47%), Positives = 101/147 (68%), Gaps = 1/147 (0%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93 T + T+ + L W+R SL + +G +CC +E R+D +R+G PR+SPRQ+ Sbjct: 13 TQNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 72 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152 D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++PV Sbjct: 73 DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTISGGMFSTDSYSTVRGVDKLIPV 132 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179 D+Y+PGCPP EA+I I L+KKI R Sbjct: 133 DVYLPGCPPKPEAVIDAITKLRKKISR 159 >gi|197294100|ref|YP_002149721.1| NADH-plastoquinone oxidoreductase subunit K [Cicer arietinum] gi|197089788|gb|ACH41058.1| NADH-plastoquinone oxidoreductase subunit K [Cicer arietinum] Length = 227 Score = 157 bits (397), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 70/147 (47%), Positives = 102/147 (69%), Gaps = 1/147 (0%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93 T + T+++ L W+R SL + +G +CC +E R+D +R+G PR+SPRQ+ Sbjct: 13 TKNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 72 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152 D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++PV Sbjct: 73 DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 132 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179 D+Y+PGCPP EA+I I L+KKI R Sbjct: 133 DVYLPGCPPKPEAVIDAITKLRKKISR 159 >gi|139389100|ref|YP_001123818.1| NADH dehydrogenase subunit K [Nasturtium officinale] gi|218527914|sp|A4QLT7|NDHK_NASOF RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K gi|134287023|dbj|BAF50642.1| photosystem II G protein [Nasturtium officinale] Length = 225 Score = 157 bits (397), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 70/147 (47%), Positives = 102/147 (69%), Gaps = 1/147 (0%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93 T + T+++ L W+R SL + +G +CC +E R+D +R+G PR+SPRQ+ Sbjct: 13 TKNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 72 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152 D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++PV Sbjct: 73 DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 132 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179 D+Y+PGCPP EA+I I L+KKI R Sbjct: 133 DVYLPGCPPKPEAVIDAITKLRKKIAR 159 >gi|156586759|gb|ABU85211.1| NADH-plastoquinone oxidoreductase subunit K [Anethum graveolens] Length = 225 Score = 157 bits (397), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 70/147 (47%), Positives = 101/147 (68%), Gaps = 1/147 (0%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93 T + T+ + L W+R SL + +G +CC +E R+D +R+G PR+SPRQ+ Sbjct: 13 TQNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 72 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152 D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++PV Sbjct: 73 DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTISGGMFSTDSYSTVRGVDKLIPV 132 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179 D+Y+PGCPP EA+I I L+KKI R Sbjct: 133 DVYLPGCPPKPEAVIDAITKLRKKISR 159 >gi|182412309|ref|YP_001817375.1| NADH dehydrogenase subunit B [Opitutus terrae PB90-1] gi|238065012|sp|B1ZRT2|NUOB1_OPITP RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName: Full=NADH dehydrogenase I subunit B 1; AltName: Full=NDH-1 subunit B 1 gi|177839523|gb|ACB73775.1| NADH-quinone oxidoreductase, B subunit [Opitutus terrae PB90-1] Length = 171 Score = 157 bits (397), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 75/149 (50%), Positives = 103/149 (69%), Gaps = 2/149 (1%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APRAS 89 S G +V+ D ++ W RT S+ M GLACCA+E+MQ R+D+ RFG R S Sbjct: 11 SSAIEGGIVVSKADAVINWIRTNSMWPMPMGLACCAIELMQVGNGRFDIARFGAEVMRFS 70 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQSD MIVAG++T KMA +RR+YDQM P++VI+MG+CA+ GG Y SY+ ++G DRI Sbjct: 71 PRQSDCMIVAGSVTYKMAPQIRRIYDQMMSPKWVIAMGACASSGGMYR-SYAHMQGVDRI 129 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIR 178 +PVD+Y+ GCPP E ++ ++ LQ KIR Sbjct: 130 LPVDVYISGCPPRPEGILDALMKLQAKIR 158 >gi|283850904|ref|ZP_06368190.1| NADH dehydrogenase I, D subunit [Desulfovibrio sp. FW1012B] gi|283573827|gb|EFC21801.1| NADH dehydrogenase I, D subunit [Desulfovibrio sp. FW1012B] Length = 790 Score = 157 bits (397), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 77/140 (55%), Positives = 99/140 (70%), Gaps = 2/140 (1%) Query: 39 LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMI 97 L D ++ WAR S+ FGL+CC VE A PRYD+ R+G R SPRQ+DV+I Sbjct: 8 LFRPTDHIINWARKNSIWPFFFGLSCCFVEEATAWGPRYDIARYGSEVFRGSPRQADVLI 67 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 V+GTL K+A R+Y+QM +P++VISMGSC+N GG Y YSVV+G D+I+PVD+Y+P Sbjct: 68 VSGTLFTKVAPVALRLYEQMSDPKWVISMGSCSNSGGMYDV-YSVVQGTDQILPVDVYIP 126 Query: 158 GCPPTAEALIYGILLLQKKI 177 GCPP EAL G+LLLQKKI Sbjct: 127 GCPPRPEALFDGLLLLQKKI 146 >gi|262400780|gb|ACY66269.1| NADH dehydrogenase subunit K [Brassica napus] Length = 225 Score = 157 bits (397), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 70/147 (47%), Positives = 102/147 (69%), Gaps = 1/147 (0%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93 T + T+++ L W+R SL + +G +CC +E R+D +R+G PR+SPRQ+ Sbjct: 13 TKNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 72 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152 D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++PV Sbjct: 73 DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 132 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179 D+Y+PGCPP EA+I I L+KKI R Sbjct: 133 DVYLPGCPPKPEAVIDAITKLRKKIAR 159 >gi|154795255|ref|NP_862758.2| NADH dehydrogenase subunit K [Calycanthus floridus var. glaucus] gi|218527905|sp|Q7YJW8|NDHK_CALFG RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K Length = 225 Score = 157 bits (397), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 69/147 (46%), Positives = 102/147 (69%), Gaps = 1/147 (0%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93 T + T+++ L W+R SL + +G +CC +E R+D +R+G PR+SPRQ+ Sbjct: 13 TQNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 72 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152 D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++PV Sbjct: 73 DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 132 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179 D+Y+PGCPP EA+I I L+KK+ R Sbjct: 133 DVYLPGCPPKPEAVIDAITKLRKKVSR 159 >gi|139390156|ref|YP_001123729.1| NADH dehydrogenase subunit K [Lobularia maritima] gi|218527911|sp|A4QLJ8|NDHK_LOBMA RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K gi|134286933|dbj|BAF50553.1| photosystem II G protein [Lobularia maritima] Length = 225 Score = 157 bits (397), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 70/147 (47%), Positives = 102/147 (69%), Gaps = 1/147 (0%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93 T + T+++ L W+R SL + +G +CC +E R+D +R+G PR+SPRQ+ Sbjct: 13 TKNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 72 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152 D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++PV Sbjct: 73 DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 132 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179 D+Y+PGCPP EA+I I L+KKI R Sbjct: 133 DVYLPGCPPKPEAVIDAITKLRKKIAR 159 >gi|295136907|ref|YP_003587739.1| NADH dehydrogenase subunit K [Lathyrus sativus] gi|293338629|gb|ADE43601.1| NADH dehydrogenase subunit K [Lathyrus sativus] Length = 225 Score = 157 bits (397), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 70/147 (47%), Positives = 102/147 (69%), Gaps = 1/147 (0%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93 T + T+++ L W+R SL + +G +CC +E R+D +R+G PR+SPRQ+ Sbjct: 13 TKNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 72 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152 D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++PV Sbjct: 73 DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 132 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179 D+Y+PGCPP EA+I I L+KKI R Sbjct: 133 DVYLPGCPPKPEAVIDAITKLRKKISR 159 >gi|139388098|ref|YP_001123290.1| photosystem II G protein [Barbarea verna] gi|218527881|sp|A4QKA9|NDHK_BARVE RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K gi|134286489|dbj|BAF50114.1| photosystem II G protein [Barbarea verna] Length = 225 Score = 157 bits (397), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 70/147 (47%), Positives = 102/147 (69%), Gaps = 1/147 (0%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93 T + T+++ L W+R SL + +G +CC +E R+D +R+G PR+SPRQ+ Sbjct: 13 TKNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 72 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152 D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++PV Sbjct: 73 DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 132 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179 D+Y+PGCPP EA+I I L+KKI R Sbjct: 133 DVYLPGCPPKPEAVIDAITKLRKKIAR 159 >gi|1709406|sp|P52766|NDHK_LUPLU RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K gi|881443|gb|AAB86906.1| NADH-ubiquinone oxidoreductase subunit [Lupinus luteus] Length = 226 Score = 157 bits (397), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 69/147 (46%), Positives = 103/147 (70%), Gaps = 1/147 (0%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93 T + T++++L W+R SL + +G +CC +E R+D +R+G PR+SPRQ+ Sbjct: 13 TQNSVISTTLNELSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 72 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152 D+++ AGT+T KMA +L R+Y+QMPEP+YVI++G+C GG + SYS VRG D+++PV Sbjct: 73 DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAIGACTITGGMFSTDSYSTVRGVDKLIPV 132 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179 D+Y+PGCPP EA+I I L+KKI R Sbjct: 133 DVYLPGCPPKPEAVIDAITKLRKKISR 159 >gi|52220814|ref|YP_086970.1| NADH dehydrogenase subunit K [Panax ginseng] gi|75254105|sp|Q68S02|NDHK_PANGI RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K gi|51235317|gb|AAT98513.1| NADH dehydrogenase 32 kDa subunit [Panax ginseng] Length = 225 Score = 157 bits (397), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 70/147 (47%), Positives = 101/147 (68%), Gaps = 1/147 (0%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93 T + T+ + L W+R SL + +G +CC +E R+D +R+G PR+SPRQ+ Sbjct: 13 TQNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 72 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152 D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++PV Sbjct: 73 DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTISGGMFSTDSYSTVRGVDKLIPV 132 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179 D+Y+PGCPP EA+I I L+KKI R Sbjct: 133 DVYLPGCPPKPEAVIDAITKLRKKISR 159 >gi|66876449|gb|AAY58005.1| NdhK [Evolvulus glomeratus] Length = 228 Score = 157 bits (397), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 70/147 (47%), Positives = 102/147 (69%), Gaps = 1/147 (0%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93 T + T+++ L W+R SL + +G +CC +E R+D +R+G PR+SPRQ+ Sbjct: 20 TTNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 79 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152 D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++PV Sbjct: 80 DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 139 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179 D+Y+PGCPP EA+I I L+KKI R Sbjct: 140 DVYLPGCPPKPEAVIDAITKLRKKISR 166 >gi|328952909|ref|YP_004370243.1| NAD(P)H-quinone oxidoreductase subunit K [Desulfobacca acetoxidans DSM 11109] gi|328453233|gb|AEB09062.1| NAD(P)H-quinone oxidoreductase subunit K [Desulfobacca acetoxidans DSM 11109] Length = 162 Score = 157 bits (397), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 75/138 (54%), Positives = 103/138 (74%), Gaps = 3/138 (2%) Query: 43 VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGT 101 +++++ R SL +TFGLACCA+EMM A R+DL+RFG R SPRQSD+MIVAGT Sbjct: 15 LEEVLNLCRANSLWPITFGLACCAIEMMAAGASRFDLDRFGAGVFRPSPRQSDLMIVAGT 74 Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS--YSVVRGCDRIVPVDIYVPGC 159 ++ KMA + R+Y+QMP P++VI+MG+CA GG + Y Y++V G D+I+PVD+YVPGC Sbjct: 75 ISKKMADPVIRLYEQMPAPKWVIAMGNCAISGGPFLYEGQYAIVPGADQIIPVDVYVPGC 134 Query: 160 PPTAEALIYGILLLQKKI 177 PP E L+ GIL L++KI Sbjct: 135 PPRPEGLLEGILQLEEKI 152 >gi|91208905|ref|YP_538939.1| NADH dehydrogenase subunit K [Gossypium hirsutum] gi|119368503|ref|YP_913191.1| NADH dehydrogenase 27kD subunit [Gossypium barbadense] gi|325210934|ref|YP_004286008.1| NADH-plastoquinone oxidoreductase subunit K [Gossypium thurberi] gi|122201392|sp|Q2L909|NDHK_GOSHI RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K gi|218527889|sp|A0ZZ39|NDHK_GOSBA RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K gi|85687419|gb|ABC73631.1| NADH-plastoquinone oxidoreductase subunit K [Gossypium hirsutum] gi|119224865|dbj|BAF41251.1| NADH dehydrogenase 27kD subunit [Gossypium barbadense] gi|290775796|gb|ADD62292.1| NADH-plastoquinone oxidoreductase subunit K [Gossypium thurberi] Length = 225 Score = 157 bits (397), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 70/147 (47%), Positives = 102/147 (69%), Gaps = 1/147 (0%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93 T + T+++ L W+R SL + +G +CC +E R+D +R+G PR+SPRQ+ Sbjct: 13 TQNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 72 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152 D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++PV Sbjct: 73 DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 132 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179 D+Y+PGCPP EA+I I L+KKI R Sbjct: 133 DVYLPGCPPKPEAVIDAITKLRKKISR 159 >gi|303248401|ref|ZP_07334661.1| NADH dehydrogenase I, D subunit [Desulfovibrio fructosovorans JJ] gi|302490199|gb|EFL50117.1| NADH dehydrogenase I, D subunit [Desulfovibrio fructosovorans JJ] Length = 790 Score = 157 bits (396), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 76/140 (54%), Positives = 100/140 (71%), Gaps = 2/140 (1%) Query: 39 LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMI 97 + + D ++ WAR SL FGL+CC VE A PRYD+ R+G R SPRQ+DV+I Sbjct: 8 VFSPTDHIINWARKNSLWPFFFGLSCCFVEEATAWGPRYDIARYGSEVFRGSPRQADVLI 67 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 V+GT+ K+A R+Y+QM +P++VISMGSC+N GG Y YSVV+G D+I+PVD+Y+P Sbjct: 68 VSGTMFKKIAPVALRLYEQMSDPKWVISMGSCSNSGGMYDV-YSVVQGSDQILPVDVYIP 126 Query: 158 GCPPTAEALIYGILLLQKKI 177 GCPP EAL G+LLLQKKI Sbjct: 127 GCPPRPEALFDGLLLLQKKI 146 >gi|290489730|gb|ADD31249.1| NADH-plastoquinone oxidoreductase subunit K protein [Euonymus americanus] Length = 228 Score = 157 bits (396), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 70/147 (47%), Positives = 101/147 (68%), Gaps = 1/147 (0%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93 T + T+ + L W+R SL + +G +CC +E R+D +R+G PR+SPRQ+ Sbjct: 13 TQNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 72 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCA-NGGGYYHYSYSVVRGCDRIVPV 152 D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++PV Sbjct: 73 DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTESYSTVRGVDKLIPV 132 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179 D+Y+PGCPP EA+I I L+KKI R Sbjct: 133 DVYLPGCPPKPEAVIDAITKLRKKISR 159 >gi|164597808|ref|NP_084666.2| NADH dehydrogenase subunit K [Oenothera elata subsp. hookeri] gi|169142697|ref|YP_001687124.1| NADH dehydrogenase subunit K [Oenothera argillicola] gi|169142847|ref|YP_001687270.1| NADH dehydrogenase subunit K [Oenothera glazioviana] gi|169142932|ref|YP_001687354.1| NADH dehydrogenase subunit K [Oenothera biennis] gi|169143018|ref|YP_001687438.1| NADH dehydrogenase subunit K [Oenothera parviflora] gi|172045789|sp|Q9MTP4|NDHK_OENEH RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K gi|218527924|sp|B0Z4L3|NDHK_OENAR RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K gi|218527925|sp|B0Z4U7|NDHK_OENBI RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K gi|218527926|sp|B0Z531|NDHK_OENGL RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K gi|218527927|sp|B0Z5B5|NDHK_OENPA RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K gi|159792935|gb|ABW98691.1| NADH dehydrogenase subunit K [Oenothera argillicola] gi|159793105|gb|ABW98859.1| NADH dehydrogenase subunit K [Oenothera biennis] gi|159895459|gb|ABX10024.1| NADH dehydrogenase subunit K [Oenothera glazioviana] gi|159895544|gb|ABX10108.1| NADH dehydrogenase subunit K [Oenothera parviflora] gi|162423675|emb|CAB67131.2| NADH dehydrogenase subunit K [Oenothera elata subsp. hookeri] Length = 225 Score = 157 bits (396), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 70/147 (47%), Positives = 101/147 (68%), Gaps = 1/147 (0%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93 T + T+ + L W+R SL + +G +CC +E R+D +R+G PR+SPRQ+ Sbjct: 13 TQNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 72 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152 D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++PV Sbjct: 73 DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 132 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179 D+Y+PGCPP EA+I I L+KKI R Sbjct: 133 DVYLPGCPPKPEAIIDAITKLRKKISR 159 >gi|154795561|ref|NP_038400.2| NADH dehydrogenase subunit K [Mesostigma viride] Length = 223 Score = 157 bits (396), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 69/141 (48%), Positives = 101/141 (71%), Gaps = 1/141 (0%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 ++T+++ L WAR SL + +G +CC +E R+D +RFG PR SPRQ+D++I Sbjct: 14 LILTTLNDLYNWARLSSLWPLLYGTSCCFIEFACLLGSRFDFDRFGLVPRCSPRQADLII 73 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPVDIYV 156 AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++PVD+Y+ Sbjct: 74 TAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYL 133 Query: 157 PGCPPTAEALIYGILLLQKKI 177 PGCPP EA+I ++ L+KK+ Sbjct: 134 PGCPPKPEAIIDAVIKLRKKV 154 >gi|37520318|ref|NP_923695.1| NADH dehydrogenase subunit B [Gloeobacter violaceus PCC 7421] gi|81710972|sp|Q7NML6|NDHK1_GLOVI RecName: Full=NAD(P)H-quinone oxidoreductase subunit K 1; AltName: Full=NAD(P)H dehydrogenase I subunit K 1; AltName: Full=NDH-1 subunit K 1; Short=NDH-K 1 gi|35211311|dbj|BAC88690.1| NADH dehydrogenase subunit [Gloeobacter violaceus PCC 7421] Length = 232 Score = 157 bits (396), Expect = 8e-37, Method: Compositional matrix adjust. Identities = 71/151 (47%), Positives = 107/151 (70%), Gaps = 2/151 (1%) Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87 ++SE+T+ ++T+++ L WAR S+ + +G +CC +E R+D +RFG PR Sbjct: 14 EVTSELTN-NVVLTTLNDLYNWARLSSVWPLMYGTSCCFIEFAGLIGSRFDFDRFGLVPR 72 Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGC 146 ASPRQ+D++I AGT+T KMA AL +Y+QMPEP+YVI+MG+C GG + SY+ VRG Sbjct: 73 ASPRQADLIITAGTVTMKMAPALVTLYEQMPEPKYVIAMGACTITGGMFSTDSYTTVRGV 132 Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 D+++PVD+Y+PGCPP EA+ I+ L+KK+ Sbjct: 133 DKLIPVDVYIPGCPPRPEAIFDAIVKLRKKM 163 >gi|122893994|ref|YP_001004190.1| NADH-plastoquinone oxidoreductase subunit K [Ranunculus macranthus] gi|218527923|sp|A1XGP2|NDHK_RANMC RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K gi|85540808|gb|ABC70760.1| NADH-plastoquinone oxidoreductase subunit K [Ranunculus macranthus] Length = 227 Score = 157 bits (396), Expect = 8e-37, Method: Compositional matrix adjust. Identities = 69/150 (46%), Positives = 103/150 (68%), Gaps = 1/150 (0%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP 90 ++ T + T+ + L W+R SL + +G +CC +E R+D +R+G PR+SP Sbjct: 10 NQTTQNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSP 69 Query: 91 RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRI 149 RQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D++ Sbjct: 70 RQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKL 129 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRR 179 +PVD+Y+PGCPP EA+I I L+KK+ R Sbjct: 130 IPVDVYLPGCPPKPEAVIDAITKLRKKVSR 159 >gi|7525037|ref|NP_051063.1| NADH dehydrogenase subunit K [Arabidopsis thaliana] gi|6685682|sp|P56756|NDHK_ARATH RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K gi|5881698|dbj|BAA84389.1| photosystem II G protein [Arabidopsis thaliana] Length = 225 Score = 157 bits (396), Expect = 8e-37, Method: Compositional matrix adjust. Identities = 71/152 (46%), Positives = 103/152 (67%), Gaps = 1/152 (0%) Query: 29 ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88 I T + T+++ L W+R SL + +G +CC +E R+D +R+G PR+ Sbjct: 8 ILDRTTKNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRS 67 Query: 89 SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCD 147 SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D Sbjct: 68 SPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVD 127 Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179 +++PVD+Y+PGCPP EA+I I L+KKI R Sbjct: 128 KLIPVDVYLPGCPPKPEAVIDAITKLRKKIAR 159 >gi|139389422|ref|YP_001123119.1| NADH dehydrogenase subunit K [Olimarabidopsis pumila] gi|218527928|sp|A4QJT7|NDHK_OLIPU RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K gi|134286316|dbj|BAF49943.1| photosystem II G protein [Olimarabidopsis pumila] Length = 225 Score = 157 bits (396), Expect = 8e-37, Method: Compositional matrix adjust. Identities = 70/147 (47%), Positives = 102/147 (69%), Gaps = 1/147 (0%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93 T + T+++ L W+R SL + +G +CC +E R+D +R+G PR+SPRQ+ Sbjct: 13 TKNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 72 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152 D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++PV Sbjct: 73 DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 132 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179 D+Y+PGCPP EA+I I L+KKI R Sbjct: 133 DVYLPGCPPKPEAVIDAITKLRKKIAR 159 >gi|156598395|gb|ABU85457.1| NADH-plastoquinone oxidoreductase subunit K [Musa acuminata] Length = 284 Score = 157 bits (396), Expect = 8e-37, Method: Compositional matrix adjust. Identities = 72/156 (46%), Positives = 107/156 (68%), Gaps = 2/156 (1%) Query: 25 DFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF 84 +F + IT+ + T+++ L W+R SL + +G +CC +E R+D +R+G Sbjct: 64 EFPLVDKTITN-SVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGL 122 Query: 85 APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVV 143 PR+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS V Sbjct: 123 VPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTV 182 Query: 144 RGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179 RG D+++PVD+Y+PGCPP EA+I I L+KKI R Sbjct: 183 RGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKKISR 218 >gi|108796798|ref|YP_636385.1| NADH dehydrogenase subunit K [Staurastrum punctulatum] gi|122211808|sp|Q32RZ1|NDHK_STAPU RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K gi|61393566|gb|AAX45707.1| 27 kDa subunit of NADH-ubiquinone oxidoreductase [Staurastrum punctulatum] Length = 280 Score = 157 bits (396), Expect = 8e-37, Method: Compositional matrix adjust. Identities = 72/177 (40%), Positives = 113/177 (63%), Gaps = 5/177 (2%) Query: 6 VNQKIISGQSSCSLEKVDADFSRISSEITHKGF----LVTSVDQLVTWARTGSLMWMTFG 61 +N ++ +S E ++ + +S IT + ++T+ W R SL + +G Sbjct: 3 INSELFRSSNSFQEEGFESVTNGLSFSITEENISDSVILTTFHDFTNWIRLSSLWPLLYG 62 Query: 62 LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPR 121 +CC +E R+D +R+G PR+SPRQ+D++I AGT+T KMA +L R+Y+QMPEP+ Sbjct: 63 TSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLIITAGTVTMKMAPSLVRLYEQMPEPK 122 Query: 122 YVISMGSCANGGGYYHY-SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 YVI+MG+C GG + SYS VRG D+++PVD+Y+PGCPP EA+I ++ L+KK+ Sbjct: 123 YVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEAIIDAVIKLRKKV 179 >gi|290489732|gb|ADD31250.1| NADH-plastoquinone oxidoreductase subunit K protein [Ficus sp. Moore 315] Length = 253 Score = 157 bits (396), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 70/147 (47%), Positives = 100/147 (68%), Gaps = 1/147 (0%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93 T + T+ L W+R SL + +G +CC +E R+D +R+G PR+SPRQ+ Sbjct: 41 TQNSVISTTSSDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 100 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152 D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++PV Sbjct: 101 DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 160 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179 D+Y+PGCPP EA+I I L+KKI R Sbjct: 161 DVYLPGCPPKPEAVIDAITKLRKKISR 187 >gi|161784196|ref|YP_001595512.1| ndhK protein [Lemna minor] gi|88696774|gb|ABD48499.1| ndhK protein [Lemna minor] Length = 243 Score = 157 bits (396), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 69/140 (49%), Positives = 100/140 (71%), Gaps = 1/140 (0%) Query: 41 TSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAG 100 T+++ L W+R SL + +G +CC +E R+D +R+G PR+SPRQ+D+++ AG Sbjct: 38 TTLNDLSNWSRLSSLWPLLYGTSCCFIEFAALIGSRFDFDRYGLVPRSSPRQADLILTAG 97 Query: 101 TLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPVDIYVPGC 159 T+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++PVD+Y+PGC Sbjct: 98 TVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGC 157 Query: 160 PPTAEALIYGILLLQKKIRR 179 PP EA+I I L+KKI R Sbjct: 158 PPKPEAVIDAITKLRKKISR 177 >gi|290489742|gb|ADD31255.1| NADH-plastoquinone oxidoreductase subunit K protein [Plumbago auriculata] Length = 285 Score = 157 bits (396), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 70/146 (47%), Positives = 102/146 (69%), Gaps = 1/146 (0%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 IT + T+++ L W+R SL + +G +CC +E R+D +R+G PR+SPRQ Sbjct: 72 ITQNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQ 131 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVP 151 +D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++P Sbjct: 132 ADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIP 191 Query: 152 VDIYVPGCPPTAEALIYGILLLQKKI 177 VD+Y+PGCPP EA+I I L+KKI Sbjct: 192 VDVYLPGCPPKPEAVIDAITKLRKKI 217 >gi|218512132|sp|Q2MI96|NDHK_SOLLC RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K gi|218512133|sp|Q2VEH3|NDHK_SOLTU RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K gi|218527953|sp|Q2MII3|NDHK_SOLBU RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K Length = 225 Score = 157 bits (396), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 70/140 (50%), Positives = 100/140 (71%), Gaps = 1/140 (0%) Query: 41 TSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAG 100 T+++ L W+R SL + +G +CC +E R+D +R+G PR+SPRQSD+++ AG Sbjct: 20 TTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQSDLILTAG 79 Query: 101 TLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPVDIYVPGC 159 T+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++PVD+Y+PGC Sbjct: 80 TVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGC 139 Query: 160 PPTAEALIYGILLLQKKIRR 179 PP EA+I I L+KKI R Sbjct: 140 PPKPEAVIDAITKLRKKISR 159 >gi|124360833|gb|ABN08805.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit [Medicago truncatula] Length = 227 Score = 157 bits (396), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 70/147 (47%), Positives = 102/147 (69%), Gaps = 1/147 (0%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93 T + T+++ L W+R SL + +G +CC +E R+D +R+G PR+SPRQ+ Sbjct: 13 TKNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 72 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152 D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++PV Sbjct: 73 DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 132 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179 D+Y+PGCPP EA+I I L+KKI R Sbjct: 133 DVYLPGCPPKPEAVIDAITKLRKKISR 159 >gi|309322179|ref|YP_003934094.1| NADH-plastoquinone oxidoreductase subunit K [Geranium palmatum] gi|197131358|gb|ACH47197.1| NADH-plastoquinone oxidoreductase subunit K [Geranium palmatum] gi|300069272|gb|ADJ66393.1| NADH-plastoquinone oxidoreductase subunit K [Geranium palmatum] Length = 225 Score = 157 bits (396), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 72/150 (48%), Positives = 102/150 (68%), Gaps = 1/150 (0%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93 T L T+ + L W+R SL + +G +CC +E R+D +R+G PR+SPRQ+ Sbjct: 13 TQNSVLSTTPNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 72 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152 D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++PV Sbjct: 73 DLVLTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 132 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGN 182 D+Y+PGCPP EA+I I L+KKI R N Sbjct: 133 DVYLPGCPPKPEAVIDAITKLRKKISREIN 162 >gi|154795239|ref|YP_001312203.2| NADH dehydrogenase subunit K [Cycas taitungensis] gi|218527897|sp|A6H5H8|NDHK_CYCTA RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K Length = 261 Score = 157 bits (396), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 70/149 (46%), Positives = 103/149 (69%), Gaps = 1/149 (0%) Query: 32 EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPR 91 + T + T+++ L WAR SL + +G +CC +E R+D +R+G PR+SPR Sbjct: 11 QTTPNSVISTTLNDLSNWARLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPR 70 Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIV 150 Q+D++I AGT+T KMA +L R+Y+QMP P+YVI+MG+C GG + SYS VRG D+++ Sbjct: 71 QADLIITAGTVTMKMAPSLVRLYEQMPGPKYVIAMGACTITGGMFSTDSYSTVRGVDKLI 130 Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRR 179 PVD+Y+PGCPP EA+I I+ L+KK+ R Sbjct: 131 PVDVYLPGCPPKPEAIIDAIIKLRKKVAR 159 >gi|114054474|gb|ABI49867.1| NADH-plastoquinone oxidoreductase subunit K [Nandina domestica] Length = 285 Score = 157 bits (396), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 70/148 (47%), Positives = 102/148 (68%), Gaps = 1/148 (0%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 IT + T+ + L W+R SL + +G +CC +E R+D +R+G PR+SPRQ Sbjct: 72 ITQNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQ 131 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVP 151 +D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++P Sbjct: 132 ADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIP 191 Query: 152 VDIYVPGCPPTAEALIYGILLLQKKIRR 179 VD+Y+PGCPP EA+I I L+KK+ R Sbjct: 192 VDVYLPGCPPKPEAVIDAITKLRKKVSR 219 >gi|50250331|emb|CAF28597.1| photosystem II G protein [Nymphaea alba] Length = 253 Score = 157 bits (396), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 69/147 (46%), Positives = 102/147 (69%), Gaps = 1/147 (0%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93 T + T+++ L W+R SL + +G +CC +E R+D +R+G PR+SPRQ+ Sbjct: 41 TPNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 100 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152 D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++PV Sbjct: 101 DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 160 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179 D+Y+PGCPP EA+I I L+KK+ R Sbjct: 161 DVYLPGCPPKPEAIIDAITKLRKKVSR 187 >gi|218527934|sp|A9QC82|NDHK_TRACE RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K gi|156598845|gb|ABU85675.1| NADH-plastoquinone oxidoreductase subunit K [Trachelium caeruleum] Length = 227 Score = 157 bits (396), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 70/147 (47%), Positives = 102/147 (69%), Gaps = 1/147 (0%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93 T + T+ ++L W+R SL + +G +CC +E R+D +R+G PR+SPRQ+ Sbjct: 13 TQNSVISTTPNELSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 72 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152 D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++PV Sbjct: 73 DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLLPV 132 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179 D+Y+PGCPP EA+I I L+KKI R Sbjct: 133 DVYLPGCPPKPEAVIDAITKLRKKISR 159 >gi|290489720|gb|ADD31244.1| NADH-plastoquinone oxidoreductase subunit K protein [Nerium oleander] Length = 246 Score = 157 bits (396), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 69/146 (47%), Positives = 101/146 (69%), Gaps = 1/146 (0%) Query: 35 HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSD 94 + T+++ L W+R SL + +G +CC +E R+D +R+G PR+SPRQ+D Sbjct: 33 QNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQAD 92 Query: 95 VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPVD 153 +++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++PVD Sbjct: 93 LILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVD 152 Query: 154 IYVPGCPPTAEALIYGILLLQKKIRR 179 +Y+PGCPP EA+I I L+KKI R Sbjct: 153 VYLPGCPPKPEAVIDAITKLRKKISR 178 >gi|154795230|ref|YP_567080.2| NADH dehydrogenase subunit K [Vitis vinifera] gi|218527949|sp|Q0ZJ16|NDHK_VITVI RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K Length = 225 Score = 157 bits (396), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 70/147 (47%), Positives = 101/147 (68%), Gaps = 1/147 (0%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93 T + T+ + L W+R SL + +G +CC +E R+D +R+G PR+SPRQ+ Sbjct: 13 TQNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 72 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152 D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++PV Sbjct: 73 DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 132 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179 D+Y+PGCPP EA+I I L+KKI R Sbjct: 133 DVYLPGCPPKPEAVIDAITKLRKKISR 159 >gi|82702143|ref|YP_411709.1| NADH dehydrogenase subunit B [Nitrosospira multiformis ATCC 25196] gi|123544779|sp|Q2YAA4|NUOB1_NITMU RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName: Full=NADH dehydrogenase I subunit B 1; AltName: Full=NDH-1 subunit B 1 gi|82410208|gb|ABB74317.1| NADH dehydrogenase subunit B [Nitrosospira multiformis ATCC 25196] Length = 221 Score = 157 bits (396), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 78/148 (52%), Positives = 101/148 (68%), Gaps = 2/148 (1%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RAS 89 E + L+T + LV W R S+ FGL+CC VEM + +YDL RFG RAS Sbjct: 29 EEDGRRSVLLTRLQDLVAWGRKNSVWPYNFGLSCCYVEMATSFTSKYDLARFGSEVIRAS 88 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQ+D+++++GT+ KMA L+R+YDQM EPR+VISMGSCAN GG Y YSVV+G DR Sbjct: 89 PRQADLIVISGTVFIKMAPVLQRLYDQMLEPRWVISMGSCANSGGMYDI-YSVVQGVDRF 147 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKI 177 +PVD+YVPGCPP +A + G+ LLQ I Sbjct: 148 LPVDVYVPGCPPRPDAFMQGLNLLQDAI 175 >gi|218527882|sp|A2T337|NDHK_ANGEV RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K gi|110628308|gb|ABG79604.1| NADH-plastoquinone oxidoreductase subunit K [Angiopteris evecta] Length = 250 Score = 156 bits (395), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 68/138 (49%), Positives = 99/138 (71%), Gaps = 1/138 (0%) Query: 41 TSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAG 100 T+++ WAR SL + +G +CC +E R+D +R+G PR+SPRQ+D++I AG Sbjct: 38 TNLNDFSNWARLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLIITAG 97 Query: 101 TLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPVDIYVPGC 159 T+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++PVD+Y+PGC Sbjct: 98 TVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGIDKLIPVDVYLPGC 157 Query: 160 PPTAEALIYGILLLQKKI 177 PP EA+I I+ L+KK+ Sbjct: 158 PPKPEAIIDAIIKLRKKV 175 >gi|197131362|gb|ACH47199.1| NADH-plastoquinone oxidoreductase subunit K [Sarcocaulon vanderietiae] Length = 213 Score = 156 bits (395), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 72/150 (48%), Positives = 102/150 (68%), Gaps = 1/150 (0%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93 T L T+ + L W+R SL + +G +CC +E R+D +R+G PR+SPRQ+ Sbjct: 13 TQNSVLSTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 72 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152 D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++PV Sbjct: 73 DLVLTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 132 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGN 182 D+Y+PGCPP EA+I I L+KKI R N Sbjct: 133 DVYLPGCPPKPEAVIDAITKLRKKIAREIN 162 >gi|157325534|ref|YP_001468312.1| NADH dehydrogenase subunit K [Ipomoea purpurea] gi|218527909|sp|A7Y3E1|NDHK_IPOPU RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K gi|157056762|gb|ABV02352.1| NADH-plastoquinone oxidoreductase subunit K [Ipomoea purpurea] Length = 235 Score = 156 bits (395), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 69/142 (48%), Positives = 101/142 (71%), Gaps = 1/142 (0%) Query: 39 LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIV 98 + T+++ L W+R SL + +G +CC +E R+D +R+G PR+SPRQ+D+++ Sbjct: 18 ISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILT 77 Query: 99 AGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPVDIYVP 157 AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++PVD+Y+P Sbjct: 78 AGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLP 137 Query: 158 GCPPTAEALIYGILLLQKKIRR 179 GCPP EA+I I L+KKI R Sbjct: 138 GCPPKPEAIIDAITKLRKKISR 159 >gi|154795251|ref|YP_001001538.2| NADH-plastoquinone oxidoreductase subunit K [Nuphar advena] gi|218527955|sp|A1XFV9|NDHK_NUPAD RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K Length = 225 Score = 156 bits (395), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 69/147 (46%), Positives = 102/147 (69%), Gaps = 1/147 (0%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93 T + T+++ L W+R SL + +G +CC +E R+D +R+G PR+SPRQ+ Sbjct: 13 TPNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 72 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152 D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++PV Sbjct: 73 DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 132 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179 D+Y+PGCPP EA+I I L+KK+ R Sbjct: 133 DVYLPGCPPKPEAIIDAITKLRKKVSR 159 >gi|317051070|ref|YP_004112186.1| NADH-quinone oxidoreductase subunit B [Desulfurispirillum indicum S5] gi|316946154|gb|ADU65630.1| NADH-quinone oxidoreductase, B subunit [Desulfurispirillum indicum S5] Length = 183 Score = 156 bits (395), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 70/142 (49%), Positives = 105/142 (73%), Gaps = 2/142 (1%) Query: 39 LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMI 97 + T++D +V WAR SL MTFG ACCA+E M A+ ++DL RFG R SPRQ+D+++ Sbjct: 16 ITTTMDAVVNWARQYSLWPMTFGTACCAIEFMSAAASQHDLSRFGAEVIRFSPRQADLLL 75 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGT++ K A L+R+Y+QMP+P++VISMG+CA GG+Y +Y ++G D+++PVD Y+ Sbjct: 76 VAGTISMKQAPVLKRIYEQMPDPKWVISMGACACSGGFYD-NYCTLQGIDQVIPVDAYIS 134 Query: 158 GCPPTAEALIYGILLLQKKIRR 179 GCPP EA++ + L+QKK++ Sbjct: 135 GCPPRPEAILDALFLIQKKLKE 156 >gi|134299891|ref|YP_001113387.1| NADH-quinone oxidoreductase subunit B [Desulfotomaculum reducens MI-1] gi|218527989|sp|A4J659|NUOB_DESRM RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|134052591|gb|ABO50562.1| NADH dehydrogenase subunit B [Desulfotomaculum reducens MI-1] Length = 196 Score = 156 bits (395), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 76/140 (54%), Positives = 105/140 (75%), Gaps = 2/140 (1%) Query: 40 VTSVDQLVTWARTGSLMWMTFGLACCAVE-MMQASMPRYDLERFGFAP-RASPRQSDVMI 97 V +++L+ AR SL M FGLACCA+E +M A+M R+DL RFG+ RASPRQ+DVM+ Sbjct: 45 VGPLEKLLNLARANSLWPMGFGLACCAIEGLMAANMARFDLARFGYEVMRASPRQADVML 104 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 V GT+T K A + R+Y+QM EP+YVI+MGSCA GG + SYSVV G D+++PVD+Y+P Sbjct: 105 VCGTVTKKAAPFVVRLYEQMAEPKYVIAMGSCAISGGPFVDSYSVVPGVDKLIPVDVYIP 164 Query: 158 GCPPTAEALIYGILLLQKKI 177 GC P +A+I+G + L++KI Sbjct: 165 GCAPRPDAVIHGFMKLKEKI 184 >gi|158334544|ref|YP_001515716.1| NADH dehydrogenase subunit B [Acaryochloris marina MBIC11017] gi|218527876|sp|B0C6I1|NDHK1_ACAM1 RecName: Full=NAD(P)H-quinone oxidoreductase subunit K 1; AltName: Full=NAD(P)H dehydrogenase I subunit K 1; AltName: Full=NDH-1 subunit K 1; Short=NDH-K 1 gi|158304785|gb|ABW26402.1| proton-translocating NAD(P)H-quinone oxidoreductase, chain B, putative [Acaryochloris marina MBIC11017] Length = 232 Score = 156 bits (395), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 76/163 (46%), Positives = 112/163 (68%), Gaps = 7/163 (4%) Query: 27 SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP 86 S+I E++ + +++SV L WAR SL + +G ACC +E+ R+D +RFG P Sbjct: 13 SQIPQELS-ENVILSSVSDLYDWARLSSLWPLMYGTACCFIEIAAMIGSRFDFDRFGLVP 71 Query: 87 RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCA-NGGGYYHYSYSVVRG 145 R+SPRQ+D++I AGT+T KMA AL R+Y+QMP+P+YVI+MG+C GG + S + VRG Sbjct: 72 RSSPRQADLIITAGTVTMKMAPALVRLYEQMPDPKYVIAMGACTITGGMFSSDSTTAVRG 131 Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKI-----RRVGNV 183 D+++PVD+Y+PGCPP EA++ I+ L+KKI R GN+ Sbjct: 132 VDKLIPVDVYLPGCPPRPEAVMDAIVKLRKKIANEDVRERGNL 174 >gi|139387440|ref|YP_001122794.1| NADH-plastoquinone oxidoreductase subunit K [Phaseolus vulgaris] gi|218527930|sp|A4GG93|NDHK_PHAVU RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K gi|112030962|gb|ABH88074.1| NADH-plastoquinone oxidoreductase subunit K [Phaseolus vulgaris] gi|158187161|gb|ABW22794.1| NADH-plastoquinone oxidoreductase subunit K [Phaseolus vulgaris] Length = 212 Score = 156 bits (395), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 69/149 (46%), Positives = 102/149 (68%), Gaps = 1/149 (0%) Query: 32 EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPR 91 + T + T+++ W+R SL + +G +CC +E R+D +R+G PR+SPR Sbjct: 11 QTTQNSVISTTLNDFSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPR 70 Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIV 150 Q+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++ Sbjct: 71 QADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLI 130 Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRR 179 PVD+Y+PGCPP EA+I I L+KKI R Sbjct: 131 PVDVYLPGCPPKPEAIIDAITKLRKKISR 159 >gi|284928645|ref|YP_003421167.1| NADH dehydrogenase subunit B [cyanobacterium UCYN-A] gi|284809104|gb|ADB94809.1| NADH dehydrogenase subunit B [cyanobacterium UCYN-A] Length = 247 Score = 156 bits (395), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 75/177 (42%), Positives = 113/177 (63%), Gaps = 5/177 (2%) Query: 6 VNQKIISGQSSCSLEKVDADFSRISS-EITH---KGFLVTSVDQLVTWARTGSLMWMTFG 61 +NQ + S+ + + + IS IT + ++T+VD L WAR SL + +G Sbjct: 1 MNQNLTPDLSTIEQSQKEKVLNPISPGNITQDLSENIILTTVDDLHNWARLSSLWPLLYG 60 Query: 62 LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPR 121 ACC +E R+D +RFG PR SPRQ+D+++VAGT+T KMA AL R+Y++MP P+ Sbjct: 61 TACCFIEFAALIGSRFDFDRFGLVPRCSPRQADLLLVAGTVTMKMAPALVRLYEEMPSPK 120 Query: 122 YVISMGSCA-NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 YVI+MG+C GG + S + VRG D+++PVD+Y+PGCPP EA+ ++ L+KK+ Sbjct: 121 YVIAMGACTITGGMFSRDSTTTVRGVDKLIPVDVYIPGCPPRPEAIFDAVIKLRKKV 177 >gi|154795231|ref|YP_053159.2| NADH dehydrogenase subunit K [Nymphaea alba] gi|218527956|sp|Q6EW44|NDHK_NYMAL RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K Length = 225 Score = 156 bits (395), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 69/147 (46%), Positives = 102/147 (69%), Gaps = 1/147 (0%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93 T + T+++ L W+R SL + +G +CC +E R+D +R+G PR+SPRQ+ Sbjct: 13 TPNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 72 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152 D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++PV Sbjct: 73 DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 132 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179 D+Y+PGCPP EA+I I L+KK+ R Sbjct: 133 DVYLPGCPPKPEAIIDAITKLRKKVSR 159 >gi|154795253|ref|YP_001294274.2| NADH-plastoquinone oxidoreductase subunit K [Illicium oligandrum] gi|218527944|sp|A6MMU8|NDHK_ILLOL RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K Length = 225 Score = 156 bits (395), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 69/147 (46%), Positives = 101/147 (68%), Gaps = 1/147 (0%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93 T + T+ + L W+R SL + +G +CC +E R+D +R+G PR+SPRQ+ Sbjct: 13 TQNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 72 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152 D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++PV Sbjct: 73 DIILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 132 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179 D+Y+PGCPP EA+I I L+KK+ R Sbjct: 133 DVYLPGCPPKPEAIIDAITKLRKKLSR 159 >gi|154795216|ref|YP_740206.2| NADH-plastoquinone oxidoreductase subunit K [Liriodendron tulipifera] gi|218527962|sp|Q0G9L5|NDHK_LIRTU RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K Length = 225 Score = 156 bits (395), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 69/147 (46%), Positives = 101/147 (68%), Gaps = 1/147 (0%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93 T + T+ + L W+R SL + +G +CC +E R+D +R+G PR+SPRQ+ Sbjct: 13 TQNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 72 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152 D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++PV Sbjct: 73 DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 132 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179 D+Y+PGCPP EA+I I L+KK+ R Sbjct: 133 DVYLPGCPPKPEAVIDAITKLRKKVSR 159 >gi|108802647|ref|YP_636303.1| NADH dehydrogenase subunit K [Eucalyptus globulus subsp. globulus] gi|60460813|gb|AAX21033.1| NADH-plastoquinone oxidoreductase subunit K [Eucalyptus globulus subsp. globulus] Length = 284 Score = 156 bits (395), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 70/147 (47%), Positives = 102/147 (69%), Gaps = 1/147 (0%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93 T + T+++ L W+R SL + +G +CC +E R+D +R+G PR+SPRQ+ Sbjct: 72 TQNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 131 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152 D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++PV Sbjct: 132 DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 191 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179 D+Y+PGCPP EA+I I L+KKI R Sbjct: 192 DVYLPGCPPKPEAVIDAITKLRKKIAR 218 >gi|290489712|gb|ADD31240.1| NADH-plastoquinone oxidoreductase subunit K protein [Ilex cornuta] Length = 225 Score = 156 bits (395), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 70/147 (47%), Positives = 101/147 (68%), Gaps = 1/147 (0%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93 T + T+ + L W+R SL + +G +CC +E R+D +R+G PR+SPRQ+ Sbjct: 13 TQNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 72 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152 D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++PV Sbjct: 73 DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 132 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179 D+Y+PGCPP EA+I I L+KKI R Sbjct: 133 DVYLPGCPPKPEAVIDAITKLRKKISR 159 >gi|290489734|gb|ADD31251.1| NADH-plastoquinone oxidoreductase subunit K protein [Gunnera manicata] Length = 283 Score = 156 bits (395), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 70/147 (47%), Positives = 101/147 (68%), Gaps = 1/147 (0%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93 T + T+ + L W+R SL + +G +CC +E R+D +R+G PR+SPRQ+ Sbjct: 71 TQNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 130 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152 D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++PV Sbjct: 131 DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 190 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179 D+Y+PGCPP EA+I I L+KKI R Sbjct: 191 DVYLPGCPPKPEAVIDAITKLRKKISR 217 >gi|139388914|ref|YP_001123641.1| NADH dehydrogenase subunit K [Lepidium virginicum] gi|218527910|sp|A4QLB0|NDHK_LEPVR RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K gi|134286844|dbj|BAF50465.1| photosystem II G protein [Lepidium virginicum] Length = 225 Score = 156 bits (395), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 70/147 (47%), Positives = 102/147 (69%), Gaps = 1/147 (0%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93 T + T+++ L W+R SL + +G +CC +E R+D +R+G PR+SPRQ+ Sbjct: 13 TTNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 72 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152 D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++PV Sbjct: 73 DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 132 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179 D+Y+PGCPP EA+I I L+KKI R Sbjct: 133 DVYLPGCPPKPEAVIDAITKLRKKIAR 159 >gi|139387256|ref|YP_001123377.1| NADH dehydrogenase subunit K [Capsella bursa-pastoris] gi|218527884|sp|A4QKJ6|NDHK_CAPBU RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K gi|134286577|dbj|BAF50201.1| photosystem II G protein [Capsella bursa-pastoris] Length = 225 Score = 156 bits (395), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 70/147 (47%), Positives = 101/147 (68%), Gaps = 1/147 (0%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93 T + T+++ L W R SL + +G +CC +E R+D +R+G PR+SPRQ+ Sbjct: 13 TKNSVISTTLNDLSNWTRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 72 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152 D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++PV Sbjct: 73 DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 132 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179 D+Y+PGCPP EA+I I L+KKI R Sbjct: 133 DVYLPGCPPKPEAVIDAITKLRKKIAR 159 >gi|197359653|gb|ACH69868.1| NADH-plastoquinone oxidoreductase subunit K [Aneura sp. Shaw 702] Length = 232 Score = 156 bits (395), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 70/151 (46%), Positives = 104/151 (68%), Gaps = 1/151 (0%) Query: 30 SSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS 89 S + ++T+++ WAR SL + +G +CC +E R+D +R+G PR+S Sbjct: 9 SDKTVTDSIILTTLNDFSNWARLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSS 68 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDR 148 PRQ+D++I AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SY+ VRG D+ Sbjct: 69 PRQADLVITAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYTTVRGVDK 128 Query: 149 IVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179 ++PVDIY+PGCPP EA+I I+ L+K+I R Sbjct: 129 LIPVDIYLPGCPPRPEAVIDAIIKLRKRIAR 159 >gi|139389954|ref|YP_001123554.1| photosystem II G protein [Draba nemorosa] gi|218527888|sp|A4QL23|NDHK_DRANE RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K gi|134286756|dbj|BAF50378.1| photosystem II G protein [Draba nemorosa] Length = 225 Score = 156 bits (395), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 70/147 (47%), Positives = 101/147 (68%), Gaps = 1/147 (0%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93 T + T+++ L W+R SL +G +CC +E R+D +R+G PR+SPRQ+ Sbjct: 13 TKNSVISTTLNDLSNWSRLSSLWPFLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 72 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152 D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++PV Sbjct: 73 DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 132 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179 D+Y+PGCPP EA+I I L+KKI R Sbjct: 133 DVYLPGCPPKPEAVIDAITKLRKKIAR 159 >gi|113200912|gb|ABI32428.1| NADH-plastoquinone oxidoreductase subunit K [Daucus carota] Length = 283 Score = 156 bits (395), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 70/147 (47%), Positives = 101/147 (68%), Gaps = 1/147 (0%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93 T + T+ + L W+R SL + +G +CC +E R+D +R+G PR+SPRQ+ Sbjct: 71 TQNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 130 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152 D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++PV Sbjct: 131 DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTISGGMFSTDSYSTVRGVDKLIPV 190 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179 D+Y+PGCPP EA+I I L+KKI R Sbjct: 191 DVYLPGCPPKPEAVIDAITKLRKKISR 217 >gi|283794972|ref|YP_003359363.1| photosystem II G protein [Olea europaea] gi|330850747|ref|YP_004376425.1| photosystem II protein G [Olea europaea subsp. europaea] gi|281428691|gb|ADA69930.1| photosystem II G protein [Olea europaea] gi|291059257|gb|ADD72093.1| NADH-plastoquinone oxidoreductase subunit K [Olea europaea] gi|328795437|emb|CBR30319.1| photosystem II protein G [Olea europaea subsp. europaea] Length = 225 Score = 156 bits (395), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 69/149 (46%), Positives = 102/149 (68%), Gaps = 1/149 (0%) Query: 32 EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPR 91 + + T+++ L W+R SL + +G +CC +E R+D +R+G PR+SPR Sbjct: 11 QTVQNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPR 70 Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIV 150 Q+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++ Sbjct: 71 QADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLI 130 Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRR 179 PVD+Y+PGCPP EA+I I L+KKI R Sbjct: 131 PVDVYLPGCPPKPEAVIDAITKLRKKISR 159 >gi|68164807|ref|YP_247603.1| NADH dehydrogenase subunit K [Cucumis sativus] gi|75317261|sp|Q4VZH1|NDHK_CUCSA RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K gi|67511402|emb|CAJ00762.1| NADH dehydrogenase subunit K [Cucumis sativus] gi|74027105|gb|AAZ94655.1| NADH dehydrogenase 32 kDa subunit [Cucumis sativus] gi|115432808|gb|ABI97421.1| NADH-plastoquinone oxidoreductase subunit K [Cucumis sativus] Length = 226 Score = 156 bits (395), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 70/147 (47%), Positives = 101/147 (68%), Gaps = 1/147 (0%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93 T + T+ + L W+R SL + +G +CC +E R+D +R+G PR+SPRQ+ Sbjct: 13 TQTSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 72 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152 D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++PV Sbjct: 73 DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 132 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179 D+Y+PGCPP EA+I I L+KKI R Sbjct: 133 DVYLPGCPPKPEAVIDAITKLRKKISR 159 >gi|118430392|ref|YP_874657.1| NADH-plastoquinone oxidoreductase subunit K [Hordeum vulgare subsp. vulgare] gi|29367118|gb|AAO72306.1| NdhK [Hordeum vulgare] gi|118201046|gb|ABK79417.1| NADH-plastoquinone oxidoreductase subunit K [Hordeum vulgare subsp. vulgare] Length = 245 Score = 156 bits (395), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 68/149 (45%), Positives = 103/149 (69%), Gaps = 1/149 (0%) Query: 32 EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPR 91 + + + T+++ L W+R SL + +G +CC +E R+D +R+G PR+SPR Sbjct: 31 QTSSNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPR 90 Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIV 150 Q+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++ Sbjct: 91 QADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLI 150 Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRR 179 PVD+Y+PGCPP EA+I + L+KKI R Sbjct: 151 PVDVYLPGCPPKPEAVIDALTKLRKKISR 179 >gi|66876431|gb|AAY57993.1| NdhK [Operculina aequisepala] Length = 235 Score = 156 bits (395), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 69/142 (48%), Positives = 101/142 (71%), Gaps = 1/142 (0%) Query: 39 LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIV 98 + T+++ L W+R SL + +G +CC +E R+D +R+G PR+SPRQ+D+++ Sbjct: 18 ISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILT 77 Query: 99 AGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPVDIYVP 157 AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++PVD+Y+P Sbjct: 78 AGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLP 137 Query: 158 GCPPTAEALIYGILLLQKKIRR 179 GCPP EA+I I L+KKI R Sbjct: 138 GCPPKPEAVIDAITKLRKKISR 159 >gi|284054939|ref|ZP_06385149.1| NADH dehydrogenase subunit B [Arthrospira platensis str. Paraca] gi|291566379|dbj|BAI88651.1| NADH dehydrogenase subunit K [Arthrospira platensis NIES-39] Length = 241 Score = 156 bits (395), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 71/151 (47%), Positives = 106/151 (70%), Gaps = 2/151 (1%) Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87 +++ E++ + ++T+VD L WAR SL + +G ACC +E R+D +RFG PR Sbjct: 20 QVTQELS-ENVILTTVDDLYNWARLSSLWPLLYGTACCFIEFAGLIGSRFDFDRFGLVPR 78 Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGC 146 +SPRQ+D++I AGT+T K + L R+Y+QMPEP+YVI+MG+C GG + S + VRG Sbjct: 79 SSPRQADLLITAGTITMKYSPMLVRLYEQMPEPKYVIAMGACTVTGGMFSMDSTTAVRGV 138 Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 D+++PVD+Y+PGCPP EA+I I+ L+KKI Sbjct: 139 DKLIPVDVYIPGCPPRPEAIIDAIIKLRKKI 169 >gi|156573611|gb|ABU85141.1| NADH-plastoquinone oxidoreductase subunit K [Yucca schidigera] Length = 239 Score = 156 bits (395), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 70/149 (46%), Positives = 102/149 (68%), Gaps = 1/149 (0%) Query: 32 EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPR 91 + T + T+ + L W+R SL + +G +CC +E R+D +R+G PR+SPR Sbjct: 25 QTTPNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPR 84 Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIV 150 Q+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++ Sbjct: 85 QADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLI 144 Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRR 179 PVD+Y+PGCPP EA+I I L+KKI R Sbjct: 145 PVDVYLPGCPPKPEAVIDAITKLRKKISR 173 >gi|147917399|gb|ABQ52523.1| NADH-plastoquinone oxidoreductase subunit K [Illicium oligandrum] Length = 283 Score = 156 bits (395), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 69/147 (46%), Positives = 101/147 (68%), Gaps = 1/147 (0%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93 T + T+ + L W+R SL + +G +CC +E R+D +R+G PR+SPRQ+ Sbjct: 71 TQNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 130 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152 D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++PV Sbjct: 131 DIILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 190 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179 D+Y+PGCPP EA+I I L+KK+ R Sbjct: 191 DVYLPGCPPKPEAIIDAITKLRKKLSR 217 >gi|154795257|ref|YP_784477.2| NADH-plastoquinone oxidoreductase subunit K [Piper cenocladum] gi|218527951|sp|Q06GQ6|NDHK_PIPCE RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K Length = 229 Score = 156 bits (395), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 68/147 (46%), Positives = 102/147 (69%), Gaps = 1/147 (0%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93 T + T+++ L W+R SL + +G +CC +E R+D +R+G PR+SPRQ+ Sbjct: 13 TQSSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 72 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152 D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++PV Sbjct: 73 DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 132 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179 D+Y+PGCPP EA++ I L+KK+ R Sbjct: 133 DVYLPGCPPKPEAILDAITKLRKKVSR 159 >gi|110456608|gb|ABG74735.1| NADH dehydrogenase 32 kDa subunit [Forsythia europaea] Length = 225 Score = 156 bits (395), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 69/149 (46%), Positives = 102/149 (68%), Gaps = 1/149 (0%) Query: 32 EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPR 91 + + T+++ L W+R SL + +G +CC +E R+D +R+G PR+SPR Sbjct: 11 QTVQNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPR 70 Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIV 150 Q+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++ Sbjct: 71 QADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLI 130 Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRR 179 PVD+Y+PGCPP EA+I I L+KKI R Sbjct: 131 PVDVYLPGCPPKPEAVIDAITKLRKKISR 159 >gi|290489726|gb|ADD31247.1| NADH-plastoquinone oxidoreductase subunit K protein [Bulnesia arborea] Length = 225 Score = 156 bits (395), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 70/147 (47%), Positives = 101/147 (68%), Gaps = 1/147 (0%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93 T + T+++ W+R SL + +G +CC +E R+D +R+G PR+SPRQ+ Sbjct: 13 TKNSVISTTLNDFSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 72 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152 D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++PV Sbjct: 73 DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 132 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179 DIY+PGCPP EA+I I L+KKI R Sbjct: 133 DIYLPGCPPKPEAVIDAITKLRKKISR 159 >gi|290489736|gb|ADD31252.1| NADH-plastoquinone oxidoreductase subunit K protein [Heuchera sanguinea] Length = 255 Score = 156 bits (395), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 70/147 (47%), Positives = 101/147 (68%), Gaps = 1/147 (0%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93 T + T+ + L W+R SL + +G +CC +E R+D +R+G PR+SPRQ+ Sbjct: 43 TQNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 102 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152 D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++PV Sbjct: 103 DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 162 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179 D+Y+PGCPP EA+I I L+KKI R Sbjct: 163 DVYLPGCPPKPEAVIDAITKLRKKISR 189 >gi|218527963|sp|A9L9A0|NDHK_LEMMI RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K Length = 225 Score = 156 bits (395), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 69/140 (49%), Positives = 100/140 (71%), Gaps = 1/140 (0%) Query: 41 TSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAG 100 T+++ L W+R SL + +G +CC +E R+D +R+G PR+SPRQ+D+++ AG Sbjct: 20 TTLNDLSNWSRLSSLWPLLYGTSCCFIEFAALIGSRFDFDRYGLVPRSSPRQADLILTAG 79 Query: 101 TLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPVDIYVPGC 159 T+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++PVD+Y+PGC Sbjct: 80 TVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGC 139 Query: 160 PPTAEALIYGILLLQKKIRR 179 PP EA+I I L+KKI R Sbjct: 140 PPKPEAVIDAITKLRKKISR 159 >gi|77463673|ref|YP_353177.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit [Rhodobacter sphaeroides 2.4.1] gi|221639516|ref|YP_002525778.1| NADH dehydrogenase subunit B [Rhodobacter sphaeroides KD131] gi|332558529|ref|ZP_08412851.1| NADH dehydrogenase subunit B [Rhodobacter sphaeroides WS8N] gi|123591710|sp|Q3J1Q8|NUOB2_RHOS4 RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName: Full=NADH dehydrogenase I subunit B 2; AltName: Full=NDH-1 subunit B 2 gi|238065037|sp|B9KJI0|NUOB2_RHOSK RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName: Full=NADH dehydrogenase I subunit B 2; AltName: Full=NDH-1 subunit B 2 gi|77388091|gb|ABA79276.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit [Rhodobacter sphaeroides 2.4.1] gi|221160297|gb|ACM01277.1| NADH-quinone oxidoreductase, B subunit [Rhodobacter sphaeroides KD131] gi|332276241|gb|EGJ21556.1| NADH dehydrogenase subunit B [Rhodobacter sphaeroides WS8N] Length = 205 Score = 156 bits (395), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 83/163 (50%), Positives = 107/163 (65%), Gaps = 5/163 (3%) Query: 16 SCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMP 75 S ++ + DA+ +H L T +D LV W+R SL FGL+CC VEM A P Sbjct: 2 SWTIGRPDAEAPEDRMAASH---LFTRLDDLVAWSRKHSLWPFNFGLSCCYVEMATALTP 58 Query: 76 RYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGG 134 YD RFG R++PRQ+D++IV+GT+ KMA L R+Y QM EPR+VISMG+CAN GG Sbjct: 59 VYDQARFGAEVIRSTPRQADLLIVSGTVFRKMAVPLYRLYSQMREPRWVISMGACANSGG 118 Query: 135 YYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 Y YSVV+G D +PVD+YVPGCPP EAL+ ++LLQ KI Sbjct: 119 MYDI-YSVVQGVDSFLPVDVYVPGCPPRPEALMEALVLLQSKI 160 >gi|290489706|gb|ADD31237.1| NADH-plastoquinone oxidoreductase subunit K protein [Aucuba japonica] Length = 254 Score = 156 bits (395), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 70/147 (47%), Positives = 102/147 (69%), Gaps = 1/147 (0%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93 T + T+++ L W+R SL + +G +CC +E R+D +R+G PR+SPRQ+ Sbjct: 42 TPNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 101 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152 D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++PV Sbjct: 102 DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 161 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179 D+Y+PGCPP EA+I I L+KKI R Sbjct: 162 DVYLPGCPPKPEAVIDAITKLRKKISR 188 >gi|209525746|ref|ZP_03274282.1| NADH-quinone oxidoreductase, B subunit [Arthrospira maxima CS-328] gi|209493719|gb|EDZ94038.1| NADH-quinone oxidoreductase, B subunit [Arthrospira maxima CS-328] Length = 241 Score = 156 bits (394), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 71/148 (47%), Positives = 102/148 (68%), Gaps = 1/148 (0%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP 90 +E + ++T+VD L WAR SL + +G ACC +E R+D +RFG PR+SP Sbjct: 22 TEELSENVILTTVDDLYNWARLSSLWPLLYGTACCFIEFAGLIGSRFDFDRFGLVPRSSP 81 Query: 91 RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRI 149 RQ+D++I AGT+T K + L R+Y+QMPEP+YVI+MG+C GG + S + VRG D++ Sbjct: 82 RQADLLITAGTITMKYSPMLVRLYEQMPEPKYVIAMGACTVTGGMFSMDSPTAVRGVDKL 141 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKI 177 +PVD+Y+PGCPP EA+I I+ L+KKI Sbjct: 142 IPVDVYIPGCPPRPEAIIDAIIKLRKKI 169 >gi|290489724|gb|ADD31246.1| NADH-plastoquinone oxidoreductase subunit K protein [Berberidopsis corallina] Length = 285 Score = 156 bits (394), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 70/147 (47%), Positives = 102/147 (69%), Gaps = 1/147 (0%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93 T ++T+ + L W+R SL + +G +CC +E R+D +R+G PR+SPRQ+ Sbjct: 73 TQNSAILTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 132 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152 D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++PV Sbjct: 133 DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 192 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179 D+Y+PGCPP EA+I I L+KKI R Sbjct: 193 DVYLPGCPPKPEAVIDAITKLRKKISR 219 >gi|292559512|ref|YP_003540935.1| NADH-plastoquinone oxidoreductase subunit K [Phoenix dactylifera] gi|290790920|gb|ADD63175.1| NADH-plastoquinone oxidoreductase subunit K [Phoenix dactylifera] gi|294620581|gb|ADF28150.1| NADH-plastoquinone oxidoreductase subunit K [Phoenix dactylifera] Length = 255 Score = 156 bits (394), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 69/149 (46%), Positives = 103/149 (69%), Gaps = 1/149 (0%) Query: 32 EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPR 91 + T + T+ + L W+R SL + +G +CC +E R+D +R+G P++SPR Sbjct: 33 QTTPNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPKSSPR 92 Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIV 150 Q+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++ Sbjct: 93 QADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLI 152 Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRR 179 PVD+Y+PGCPP EA+I I+ L+KKI R Sbjct: 153 PVDVYLPGCPPKPEAVIDAIMKLRKKISR 181 >gi|323148834|ref|YP_004221927.1| NADH-plastoquinone oxidoreductase subunit K [Erodium carvifolium] gi|316926298|gb|ADU58151.1| NADH-plastoquinone oxidoreductase subunit K [Erodium carvifolium] Length = 227 Score = 156 bits (394), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 71/147 (48%), Positives = 101/147 (68%), Gaps = 1/147 (0%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93 T L T+ + L W+R SL + +G +CC +E R+D +R+G PR+SPRQ+ Sbjct: 13 TQNSVLSTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 72 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152 D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++PV Sbjct: 73 DLVLTAGTVTLKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 132 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179 D+Y+PGCPP EA+I I L+KKI R Sbjct: 133 DVYLPGCPPKPEAVIDAITKLRKKISR 159 >gi|22298247|ref|NP_681494.1| NADH dehydrogenase subunit B [Thermosynechococcus elongatus BP-1] gi|81743557|sp|Q8DKZ4|NDHK_THEEB RecName: Full=NAD(P)H-quinone oxidoreductase subunit K; AltName: Full=NAD(P)H dehydrogenase I subunit K; AltName: Full=NDH-1 subunit K; Short=NDH-K gi|22294426|dbj|BAC08256.1| NADH dehydrogenase subunit [Thermosynechococcus elongatus BP-1] Length = 237 Score = 156 bits (394), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 70/143 (48%), Positives = 101/143 (70%), Gaps = 1/143 (0%) Query: 36 KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDV 95 + ++TS++ + WAR SL + +G ACC +E R+D +RFG PR SPRQ+D+ Sbjct: 24 ENIILTSLNDVYDWARLSSLWPLMYGTACCFIEFAAMIGSRFDFDRFGLVPRNSPRQADL 83 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCA-NGGGYYHYSYSVVRGCDRIVPVDI 154 +I +GT+T KMA AL R+Y+QMP P+YVI+MG+C GG + SYS VRG D+++PVD+ Sbjct: 84 IITSGTITMKMAPALVRLYEQMPSPKYVIAMGACTITGGMFSSDSYSAVRGVDKLIPVDV 143 Query: 155 YVPGCPPTAEALIYGILLLQKKI 177 Y+PGCPP EA++ I+ L+KKI Sbjct: 144 YLPGCPPRPEAIMDAIVKLRKKI 166 >gi|11837|emb|CAA77357.1| NADH dehydrogenase 27kD subunit [Nicotiana tabacum] gi|77799566|dbj|BAE46655.1| NADH dehydrogenase 27kD subunit [Nicotiana sylvestris] gi|225205|prf||1211235AK bhpB gene Length = 284 Score = 156 bits (394), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 70/147 (47%), Positives = 102/147 (69%), Gaps = 1/147 (0%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93 T + T+++ L W+R SL + +G +CC +E R+D +R+G PR+SPRQ+ Sbjct: 72 TQNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 131 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152 D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++PV Sbjct: 132 DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 191 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179 D+Y+PGCPP EA+I I L+KKI R Sbjct: 192 DVYLPGCPPKPEAVIDAITKLRKKISR 218 >gi|66876443|gb|AAY58001.1| NdhK [Falkia repens] Length = 235 Score = 156 bits (394), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 69/140 (49%), Positives = 100/140 (71%), Gaps = 1/140 (0%) Query: 41 TSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAG 100 T+++ L W+R SL + +G +CC +E R+D +R+G PR+SPRQ+D+++ AG Sbjct: 20 TTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAG 79 Query: 101 TLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPVDIYVPGC 159 T+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++PVD+Y+PGC Sbjct: 80 TVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGC 139 Query: 160 PPTAEALIYGILLLQKKIRR 179 PP EA+I I L+KKI R Sbjct: 140 PPKPEAVIDAITKLRKKISR 159 >gi|154795229|ref|YP_001023705.2| NADH dehydrogenase subunit K [Angiopteris evecta] Length = 232 Score = 156 bits (394), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 68/138 (49%), Positives = 99/138 (71%), Gaps = 1/138 (0%) Query: 41 TSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAG 100 T+++ WAR SL + +G +CC +E R+D +R+G PR+SPRQ+D++I AG Sbjct: 20 TNLNDFSNWARLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLIITAG 79 Query: 101 TLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPVDIYVPGC 159 T+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++PVD+Y+PGC Sbjct: 80 TVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGIDKLIPVDVYLPGC 139 Query: 160 PPTAEALIYGILLLQKKI 177 PP EA+I I+ L+KK+ Sbjct: 140 PPKPEAIIDAIIKLRKKV 157 >gi|126462505|ref|YP_001043619.1| NADH dehydrogenase subunit B [Rhodobacter sphaeroides ATCC 17029] gi|238065036|sp|A3PKI1|NUOB2_RHOS1 RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName: Full=NADH dehydrogenase I subunit B 2; AltName: Full=NDH-1 subunit B 2 gi|126104169|gb|ABN76847.1| NADH-quinone oxidoreductase, B subunit [Rhodobacter sphaeroides ATCC 17029] Length = 205 Score = 156 bits (394), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 83/163 (50%), Positives = 107/163 (65%), Gaps = 5/163 (3%) Query: 16 SCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMP 75 S ++ + DA+ +H L T +D LV W+R SL FGL+CC VEM A P Sbjct: 2 SWTIGRPDAEAPEDRMAASH---LFTRLDDLVAWSRKHSLWPFNFGLSCCYVEMATALTP 58 Query: 76 RYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGG 134 YD RFG R++PRQ+D++IV+GT+ KMA L R+Y QM EPR+VISMG+CAN GG Sbjct: 59 VYDQARFGAEVIRSTPRQADLLIVSGTVFRKMAVPLYRLYSQMREPRWVISMGACANSGG 118 Query: 135 YYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 Y YSVV+G D +PVD+YVPGCPP EAL+ ++LLQ KI Sbjct: 119 MYDI-YSVVQGVDSFLPVDVYVPGCPPRPEALMEALVLLQSKI 160 >gi|27904647|ref|NP_777773.1| NADH dehydrogenase subunit B [Buchnera aphidicola str. Bp (Baizongia pistaciae)] gi|38372478|sp|Q89AU5|NUOB_BUCBP RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|27904044|gb|AAO26878.1| NADH dehydrogenase I chain B [Buchnera aphidicola str. Bp (Baizongia pistaciae)] Length = 222 Score = 156 bits (394), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 76/144 (52%), Positives = 99/144 (68%), Gaps = 2/144 (1%) Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95 G L + LV W R SL FGL+CC VEM+ + +D+ RFG RASPRQ+D Sbjct: 40 GTLSKVLHNLVNWGRKNSLWPYNFGLSCCYVEMVTSFTSVHDISRFGSEVLRASPRQADF 99 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155 M++AGT KM ++R+YDQM EP++VISMGSCAN GG Y YSVV+G D+ +PVD+Y Sbjct: 100 MVIAGTPFIKMVPIIQRLYDQMLEPKWVISMGSCANSGGMYDI-YSVVQGVDKFLPVDVY 158 Query: 156 VPGCPPTAEALIYGILLLQKKIRR 179 +PGCPP EA I+G++LLQK I + Sbjct: 159 IPGCPPRPEAYIHGLMLLQKSISK 182 >gi|317046177|ref|YP_004072466.1| NADH dehydrogenase 32 kDa subunit [Corynocarpus laevigata] gi|309252894|gb|ADO60314.1| NADH dehydrogenase 32 kDa subunit [Corynocarpus laevigata] Length = 226 Score = 156 bits (394), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 70/147 (47%), Positives = 101/147 (68%), Gaps = 1/147 (0%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93 T + T+ + L W+R SL + +G +CC +E R+D +R+G PR+SPRQ+ Sbjct: 13 TQTSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 72 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152 D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++PV Sbjct: 73 DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 132 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179 D+Y+PGCPP EA+I I L+KKI R Sbjct: 133 DVYLPGCPPKPEAVIDAITKLRKKISR 159 >gi|289066814|ref|YP_003434332.1| NADH-plastoquinone oxidoreductase subunit K [Vigna radiata] gi|259020001|gb|ACV90199.1| NADH-plastoquinone oxidoreductase subunit K [Vigna radiata] Length = 212 Score = 156 bits (394), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 69/149 (46%), Positives = 102/149 (68%), Gaps = 1/149 (0%) Query: 32 EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPR 91 + T + T+++ W+R SL + +G +CC +E R+D +R+G PR+SPR Sbjct: 11 QTTKNSVISTTLNDFSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPR 70 Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIV 150 Q+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++ Sbjct: 71 QADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLI 130 Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRR 179 PVD+Y+PGCPP EA+I I L+KKI R Sbjct: 131 PVDVYLPGCPPKPEAIIDAITKLRKKISR 159 >gi|154795256|ref|YP_784390.2| NADH-plastoquinone oxidoreductase subunit K [Drimys granadensis] gi|218527894|sp|Q06GZ3|NDHK_DRIGR RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K Length = 227 Score = 156 bits (394), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 69/147 (46%), Positives = 101/147 (68%), Gaps = 1/147 (0%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93 T + T+ + L W+R SL + +G +CC +E R+D +R+G PR+SPRQ+ Sbjct: 13 TQNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 72 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152 D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++PV Sbjct: 73 DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 132 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179 D+Y+PGCPP EA+I I L+KK+ R Sbjct: 133 DVYLPGCPPKPEAVIDAITKLRKKVSR 159 >gi|13518424|ref|NP_084784.1| NADH dehydrogenase subunit K [Lotus japonicus] gi|18202728|sp|Q9BBT7|NDHK_LOTJA RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K gi|13358965|dbj|BAB33182.1| photosystem II G protein [Lotus japonicus] Length = 230 Score = 156 bits (394), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 68/147 (46%), Positives = 102/147 (69%), Gaps = 1/147 (0%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93 T + T+++ L W+R SL + +G +CC +E R+D +R+G PR+SPRQ+ Sbjct: 13 TQNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 72 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152 D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++PV Sbjct: 73 DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 132 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179 D+Y+PGCPP E+++ I L+KKI R Sbjct: 133 DVYLPGCPPKPESILDAITKLRKKISR 159 >gi|42795491|gb|AAS46058.1| NADH dehydrogenase subunit K [Oryza sativa Indica Group] gi|42795558|gb|AAS46124.1| NADH dehydrogenase subunit K [Oryza sativa Japonica Group] gi|42795622|gb|AAS46187.1| NADH dehydrogenase subunit K [Oryza sativa Japonica Group] gi|290790577|gb|ADD62837.1| NADH-plastoquinone oxidoreductase subunit K [Oryza sativa Japonica Group] gi|290790646|gb|ADD62905.1| NADH-plastoquinone oxidoreductase subunit K [Oryza meridionalis] gi|290790715|gb|ADD62973.1| NADH-plastoquinone oxidoreductase subunit K [Oryza australiensis] Length = 253 Score = 156 bits (394), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 68/149 (45%), Positives = 102/149 (68%), Gaps = 1/149 (0%) Query: 32 EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPR 91 + + + T++ L W+R SL + +G +CC +E R+D +R+G PR+SPR Sbjct: 39 QTSSNSVISTTLKDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPR 98 Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIV 150 Q+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++ Sbjct: 99 QADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLI 158 Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRR 179 PVD+Y+PGCPP EA+I + L+KKI R Sbjct: 159 PVDVYLPGCPPKPEAVIDALTKLRKKISR 187 >gi|218527893|sp|Q85XC3|NDHK_HORVU RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K Length = 225 Score = 156 bits (394), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 68/149 (45%), Positives = 103/149 (69%), Gaps = 1/149 (0%) Query: 32 EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPR 91 + + + T+++ L W+R SL + +G +CC +E R+D +R+G PR+SPR Sbjct: 11 QTSSNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPR 70 Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIV 150 Q+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++ Sbjct: 71 QADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLI 130 Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRR 179 PVD+Y+PGCPP EA+I + L+KKI R Sbjct: 131 PVDVYLPGCPPKPEAVIDALTKLRKKISR 159 >gi|218527959|sp|Q09X13|NDHK_MORIN RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K Length = 226 Score = 156 bits (394), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 70/147 (47%), Positives = 100/147 (68%), Gaps = 1/147 (0%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93 T + T+ L W+R SL + +G +CC +E R+D +R+G PR+SPRQ+ Sbjct: 14 TQNSVISTTSSDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 73 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152 D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++PV Sbjct: 74 DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 133 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179 D+Y+PGCPP EA+I I L+KKI R Sbjct: 134 DVYLPGCPPKPEAVIDAITKLRKKISR 160 >gi|197131356|gb|ACH47196.1| NADH-plastoquinone oxidoreductase subunit K [Geranium macrorrhizum] Length = 217 Score = 156 bits (394), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 71/147 (48%), Positives = 101/147 (68%), Gaps = 1/147 (0%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93 T L T+ + L W+R SL + +G +CC +E R+D +R+G PR+SPRQ+ Sbjct: 13 TQNSVLSTTPNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 72 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152 D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++PV Sbjct: 73 DLVLTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 132 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179 D+Y+PGCPP EA+I I L+KKI R Sbjct: 133 DVYLPGCPPKPEAVIDAITKLRKKISR 159 >gi|225164240|ref|ZP_03726513.1| NADH dehydrogenase (quinone) [Opitutaceae bacterium TAV2] gi|224801145|gb|EEG19468.1| NADH dehydrogenase (quinone) [Opitutaceae bacterium TAV2] Length = 178 Score = 156 bits (394), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 71/142 (50%), Positives = 104/142 (73%), Gaps = 2/142 (1%) Query: 39 LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMI 97 ++++ D ++ W R+ S+ M GLACC +E+M R+D+ RFG R SPRQ D MI Sbjct: 19 VISTADAVINWIRSNSIWPMPMGLACCGIELMGVGGARFDISRFGAEVMRFSPRQCDCMI 78 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGT+T KMAS +RR+YDQM EP++VI+MG+CA+ GG Y SY+ ++G DRI+PVD+Y+ Sbjct: 79 VAGTVTYKMASHVRRIYDQMAEPKWVIAMGACASSGGMYR-SYATLQGVDRIIPVDVYIS 137 Query: 158 GCPPTAEALIYGILLLQKKIRR 179 GCPP EA++ ++ +Q+KI+R Sbjct: 138 GCPPRPEAVLDALVKMQEKIKR 159 >gi|91701654|gb|ABE47538.1| NADH-plastoquinone oxidoreductase subunit K [Vitis vinifera] gi|147769052|emb|CAN63542.1| hypothetical protein VITISV_025533 [Vitis vinifera] Length = 283 Score = 156 bits (394), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 70/147 (47%), Positives = 101/147 (68%), Gaps = 1/147 (0%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93 T + T+ + L W+R SL + +G +CC +E R+D +R+G PR+SPRQ+ Sbjct: 71 TQNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 130 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152 D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++PV Sbjct: 131 DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 190 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179 D+Y+PGCPP EA+I I L+KKI R Sbjct: 191 DVYLPGCPPKPEAVIDAITKLRKKISR 217 >gi|49614999|dbj|BAD26782.1| NADH dehydrogenase subunit K [Oryza nivara] Length = 246 Score = 156 bits (394), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 68/149 (45%), Positives = 102/149 (68%), Gaps = 1/149 (0%) Query: 32 EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPR 91 + + + T++ L W+R SL + +G +CC +E R+D +R+G PR+SPR Sbjct: 32 QTSSNSVISTTLKDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPR 91 Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIV 150 Q+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++ Sbjct: 92 QADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLI 151 Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRR 179 PVD+Y+PGCPP EA+I + L+KKI R Sbjct: 152 PVDVYLPGCPPKPEAVIDALTKLRKKISR 180 >gi|313183927|ref|YP_004021781.1| NADH-plastoquinone oxidoreductase subunit K [Equisetum arvense] gi|281371647|gb|ADA63580.1| NADH-plastoquinone oxidoreductase subunit K [Equisetum arvense] Length = 250 Score = 156 bits (394), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 72/176 (40%), Positives = 115/176 (65%), Gaps = 8/176 (4%) Query: 6 VNQKIISGQSSCSLE-KVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLAC 64 +N II + S+E +D++ + + ++T++ WAR SL + +G +C Sbjct: 10 LNPSIIHEKIRFSMEPSIDSNTNELD------AIILTNLKDFSNWARLSSLWPLLYGTSC 63 Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E R+D +R+G PR+SPRQ+D++I AGT+T KMA +L R+Y+QMPEP+YVI Sbjct: 64 CFIEFASLIGSRFDFDRYGLVPRSSPRQADLLITAGTVTMKMAPSLVRLYEQMPEPKYVI 123 Query: 125 SMGSCANGGGYYHY-SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179 +MG+C GG + SYS VRG D+++PV++Y+PGCPP EA+I ++ L+K++ R Sbjct: 124 AMGACTITGGMFSTDSYSTVRGVDKLIPVNVYLPGCPPKPEAIIDAVVKLRKEVAR 179 >gi|126165891|ref|NP_783236.2| NADH dehydrogenase subunit K [Atropa belladonna] Length = 247 Score = 156 bits (394), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 69/146 (47%), Positives = 101/146 (69%), Gaps = 1/146 (0%) Query: 35 HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSD 94 + T+++ L W+R SL + +G +CC +E R+D +R+G PR+SPRQ+D Sbjct: 36 QNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQAD 95 Query: 95 VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPVD 153 +++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++PVD Sbjct: 96 LILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVD 155 Query: 154 IYVPGCPPTAEALIYGILLLQKKIRR 179 +Y+PGCPP EA+I I L+KKI R Sbjct: 156 VYLPGCPPKPEAVIDAITKLRKKISR 181 >gi|290489704|gb|ADD31236.1| NADH-plastoquinone oxidoreductase subunit K protein [Antirrhinum majus] Length = 254 Score = 155 bits (393), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 69/140 (49%), Positives = 100/140 (71%), Gaps = 1/140 (0%) Query: 41 TSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAG 100 T+++ L W+R SL + +G +CC +E R+D +R+G PR+SPRQ+D+++ AG Sbjct: 49 TTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAG 108 Query: 101 TLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPVDIYVPGC 159 T+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++PVD+Y+PGC Sbjct: 109 TVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGC 168 Query: 160 PPTAEALIYGILLLQKKIRR 179 PP EA+I I L+KKI R Sbjct: 169 PPKPEAVIDAITKLRKKISR 188 >gi|154795222|ref|YP_319769.3| NADH dehydrogenase subunit K [Acorus calamus] gi|161622314|ref|YP_001586186.1| NADH dehydrogenase subunit K [Acorus americanus] gi|218527878|sp|A9LYA5|NDHK_ACOAM RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K gi|218527908|sp|Q3V530|NDHK_ACOCL RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K gi|160369857|gb|ABX38748.1| NADH-plastoquinone oxidoreductase subunit K [Acorus americanus] Length = 239 Score = 155 bits (393), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 69/147 (46%), Positives = 102/147 (69%), Gaps = 1/147 (0%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93 T + T+++ L W+R SL + +G +CC +E R+D +R+G PR+SPRQ+ Sbjct: 13 TPNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 72 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152 D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++PV Sbjct: 73 DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 132 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179 D+Y+PGCPP EA+I I L+KK+ R Sbjct: 133 DVYLPGCPPKPEAVIDAITKLRKKLSR 159 >gi|126165918|ref|YP_398867.2| NADH dehydrogenase subunit K [Nicotiana tomentosiformis] Length = 247 Score = 155 bits (393), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 69/140 (49%), Positives = 100/140 (71%), Gaps = 1/140 (0%) Query: 41 TSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAG 100 T+++ L W+R SL + +G +CC +E R+D +R+G PR+SPRQ+D+++ AG Sbjct: 42 TTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAG 101 Query: 101 TLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPVDIYVPGC 159 T+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++PVD+Y+PGC Sbjct: 102 TVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGC 161 Query: 160 PPTAEALIYGILLLQKKIRR 179 PP EA+I I L+KKI R Sbjct: 162 PPKPEAVIDAITKLRKKISR 181 >gi|309322102|ref|YP_003933918.1| NADH-plastoquinone oxidoreductase subunit K [Erodium texanum] gi|197131352|gb|ACH47194.1| NADH-plastoquinone oxidoreductase subunit K [Erodium texanum] gi|300069195|gb|ADJ66317.1| NADH-plastoquinone oxidoreductase subunit K [Erodium texanum] Length = 227 Score = 155 bits (393), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 72/150 (48%), Positives = 101/150 (67%), Gaps = 1/150 (0%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93 T L T+ L W+R SL + +G +CC +E R+D +R+G PR+SPRQ+ Sbjct: 13 TQNSVLSTTSKDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 72 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152 D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++PV Sbjct: 73 DLVLTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 132 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGN 182 D+Y+PGCPP EA+I I L+KKI R N Sbjct: 133 DVYLPGCPPKPEAVIDAITKLRKKISREIN 162 >gi|295065732|ref|YP_003587672.1| NADH dehydrogenase subunit K [Anomochloa marantoidea] gi|251765256|gb|ACT15410.1| NADH dehydrogenase subunit K [Anomochloa marantoidea] Length = 222 Score = 155 bits (393), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 69/149 (46%), Positives = 102/149 (68%), Gaps = 1/149 (0%) Query: 32 EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPR 91 + T + T+ + L W+R SL + +G +CC +E R+D +R+G PR+SPR Sbjct: 11 QTTSNSVISTTPNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPR 70 Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIV 150 Q+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++ Sbjct: 71 QADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLI 130 Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRR 179 PVD+Y+PGCPP EA+I + L+KKI R Sbjct: 131 PVDVYLPGCPPKPEAVIDALTKLRKKISR 159 >gi|290489718|gb|ADD31243.1| NADH-plastoquinone oxidoreductase subunit K protein [Nelumbo nucifera] Length = 285 Score = 155 bits (393), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 69/147 (46%), Positives = 102/147 (69%), Gaps = 1/147 (0%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93 T + T+++ L W+R SL + +G +CC +E R+D +R+G PR+SPRQ+ Sbjct: 73 TQNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 132 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152 D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++PV Sbjct: 133 DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 192 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179 D+Y+PGCPP EA+I I L+KK+ R Sbjct: 193 DVYLPGCPPKPEAVIDAITKLRKKVSR 219 >gi|218527958|sp|Q33C30|NDHK_NICTO RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K Length = 225 Score = 155 bits (393), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 69/140 (49%), Positives = 100/140 (71%), Gaps = 1/140 (0%) Query: 41 TSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAG 100 T+++ L W+R SL + +G +CC +E R+D +R+G PR+SPRQ+D+++ AG Sbjct: 20 TTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAG 79 Query: 101 TLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPVDIYVPGC 159 T+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++PVD+Y+PGC Sbjct: 80 TVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGC 139 Query: 160 PPTAEALIYGILLLQKKIRR 179 PP EA+I I L+KKI R Sbjct: 140 PPKPEAVIDAITKLRKKISR 159 >gi|115531919|ref|YP_784075.1| NADH-plastoquinone oxidoreductase subunit K [Pelargonium x hortorum] gi|122164275|sp|Q06FV6|NDHK_PELHO RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K gi|112382073|gb|ABI17266.1| NADH-plastoquinone oxidoreductase subunit K [Pelargonium x hortorum] Length = 227 Score = 155 bits (393), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 70/147 (47%), Positives = 101/147 (68%), Gaps = 1/147 (0%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93 T + T+ + L W+R SL + +G +CC +E R+D +R+G PR+SPRQ+ Sbjct: 13 TKNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 72 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152 D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++PV Sbjct: 73 DLVLTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 132 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179 D+Y+PGCPP EA+I I L+KKI R Sbjct: 133 DVYLPGCPPKPEAVIDAITKLRKKISR 159 >gi|110456747|gb|ABG74842.1| NADH dehydrogenase 32 kDa subunit [Menodora longiflora] Length = 213 Score = 155 bits (393), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 69/140 (49%), Positives = 100/140 (71%), Gaps = 1/140 (0%) Query: 41 TSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAG 100 T+++ L W+R SL + +G +CC +E R+D +R+G PR+SPRQ+D+++ AG Sbjct: 20 TTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAG 79 Query: 101 TLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPVDIYVPGC 159 T+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++PVD+Y+PGC Sbjct: 80 TVTMKMAPSLMRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGC 139 Query: 160 PPTAEALIYGILLLQKKIRR 179 PP EA+I I L+KKI R Sbjct: 140 PPKPEAVIDAITKLRKKISR 159 >gi|89280639|ref|YP_514856.1| NADH dehydrogenase subunit K [Solanum lycopersicum] gi|91208992|ref|YP_538852.1| NADH dehydrogenase subunit K [Solanum bulbocastanum] gi|108773134|ref|YP_635643.1| NADH dehydrogenase subunit K [Solanum tuberosum] gi|84371899|gb|ABC56217.1| NADH-plastoquinone oxidoreductase subunit K [Solanum bulbocastanum] gi|84371987|gb|ABC56304.1| NADH-plastoquinone oxidoreductase subunit K [Solanum lycopersicum] gi|88656808|gb|ABD47061.1| NADH-plastoquinone oxidoreductase subunit K [Solanum tuberosum] gi|89241675|emb|CAJ32397.1| NADH dehydrogenase subunit K [Solanum lycopersicum] Length = 284 Score = 155 bits (393), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 70/140 (50%), Positives = 100/140 (71%), Gaps = 1/140 (0%) Query: 41 TSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAG 100 T+++ L W+R SL + +G +CC +E R+D +R+G PR+SPRQSD+++ AG Sbjct: 79 TTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQSDLILTAG 138 Query: 101 TLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPVDIYVPGC 159 T+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++PVD+Y+PGC Sbjct: 139 TVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGC 198 Query: 160 PPTAEALIYGILLLQKKIRR 179 PP EA+I I L+KKI R Sbjct: 199 PPKPEAVIDAITKLRKKISR 218 >gi|313183826|ref|YP_004021669.1| NADH-plastoquinone oxidoreductase subunit K [Prunus persica] gi|309321438|gb|ADO64979.1| NADH-plastoquinone oxidoreductase subunit K [Prunus persica] Length = 226 Score = 155 bits (393), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 70/147 (47%), Positives = 100/147 (68%), Gaps = 1/147 (0%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93 T + T+ L W+R SL + +G +CC +E R+D +R+G PR+SPRQ+ Sbjct: 14 TQNSVISTTSSDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 73 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152 D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++PV Sbjct: 74 DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 133 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179 D+Y+PGCPP EA+I I L+KKI R Sbjct: 134 DVYLPGCPPKPEAVIDAITKLRKKISR 160 >gi|326200285|gb|ADZ52324.1| NADH dehydrogenase 32 kDa subunit [Asclepias syriaca] Length = 227 Score = 155 bits (393), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 69/140 (49%), Positives = 100/140 (71%), Gaps = 1/140 (0%) Query: 41 TSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAG 100 T+++ L W+R SL + +G +CC +E R+D +R+G PR+SPRQ+D+++ AG Sbjct: 20 TTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAG 79 Query: 101 TLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPVDIYVPGC 159 T+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++PVD+Y+PGC Sbjct: 80 TVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGC 139 Query: 160 PPTAEALIYGILLLQKKIRR 179 PP EA+I I L+KKI R Sbjct: 140 PPKPEAVIDAITKLRKKISR 159 >gi|218512130|sp|P06670|NDHK_MAIZE RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K Length = 227 Score = 155 bits (393), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 68/149 (45%), Positives = 103/149 (69%), Gaps = 1/149 (0%) Query: 32 EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPR 91 + + + T+++ L W+R SL + +G +CC +E R+D +R+G PR+SPR Sbjct: 11 QTSSNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPR 70 Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIV 150 Q+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++ Sbjct: 71 QADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLI 130 Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRR 179 PVD+Y+PGCPP EA+I + L+KKI R Sbjct: 131 PVDVYLPGCPPKPEAVIDALTKLRKKIAR 159 >gi|197131364|gb|ACH47200.1| NADH-plastoquinone oxidoreductase subunit K [Pelargonium cotyledonis] Length = 227 Score = 155 bits (393), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 70/147 (47%), Positives = 101/147 (68%), Gaps = 1/147 (0%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93 T + T+ + L W+R SL + +G +CC +E R+D +R+G PR+SPRQ+ Sbjct: 13 TKNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 72 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152 D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++PV Sbjct: 73 DLVLTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 132 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179 D+Y+PGCPP EA+I I L+KKI R Sbjct: 133 DVYLPGCPPKPEAVIDAITKLRKKISR 159 >gi|218527902|sp|Q8S8X1|NDHK_ATRBE RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K Length = 225 Score = 155 bits (393), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 69/146 (47%), Positives = 101/146 (69%), Gaps = 1/146 (0%) Query: 35 HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSD 94 + T+++ L W+R SL + +G +CC +E R+D +R+G PR+SPRQ+D Sbjct: 14 QNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQAD 73 Query: 95 VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPVD 153 +++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++PVD Sbjct: 74 LILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVD 133 Query: 154 IYVPGCPPTAEALIYGILLLQKKIRR 179 +Y+PGCPP EA+I I L+KKI R Sbjct: 134 VYLPGCPPKPEAVIDAITKLRKKISR 159 >gi|115391908|ref|YP_778496.1| NADH dehydrogenase subunit K [Jasminum nudiflorum] gi|122164967|sp|Q06RC5|NDHK_JASNU RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K gi|110456229|gb|ABG74634.1| NADH dehydrogenase 32 kDa subunit [Jasminum nudiflorum] gi|110456646|gb|ABG74765.1| NADH dehydrogenase 32 kDa subunit [Jasminum leratii] gi|110456683|gb|ABG74792.1| NADH dehydrogenase 32 kDa subunit [Jasminum abyssinicum] gi|110456715|gb|ABG74818.1| NADH dehydrogenase 32 kDa subunit [Jasminum subhumile] Length = 213 Score = 155 bits (393), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 69/149 (46%), Positives = 101/149 (67%), Gaps = 1/149 (0%) Query: 32 EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPR 91 + T+++ L W+R SL + +G +CC +E R+D +R+G PR+SPR Sbjct: 11 QTVQNSVFSTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPR 70 Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIV 150 Q+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++ Sbjct: 71 QADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLI 130 Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRR 179 PVD+Y+PGCPP EA+I I L+KKI R Sbjct: 131 PVDVYLPGCPPKPEAVIDAITKLRKKISR 159 >gi|258514491|ref|YP_003190713.1| NADH-quinone oxidoreductase, B subunit [Desulfotomaculum acetoxidans DSM 771] gi|257778196|gb|ACV62090.1| NADH-quinone oxidoreductase, B subunit [Desulfotomaculum acetoxidans DSM 771] Length = 175 Score = 155 bits (393), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 74/140 (52%), Positives = 105/140 (75%), Gaps = 2/140 (1%) Query: 40 VTSVDQLVTWARTGSLMWMTFGLACCAVE-MMQASMPRYDLERFGF-APRASPRQSDVMI 97 + +++++ AR S+ M FGLACCA+E +M A+ PRYDL RFG+ R SPRQ+DVM+ Sbjct: 28 IGPLEKILNLARAHSMWPMAFGLACCAIEALMGATGPRYDLARFGYEVLRPSPRQADVMV 87 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGT+T K A + R+Y+QMP+P++VI++GSCA GG + SY VV G D+++PVD+YVP Sbjct: 88 VAGTITRKSAPFVVRLYEQMPDPKWVIAVGSCAISGGPFVDSYYVVPGADKLIPVDVYVP 147 Query: 158 GCPPTAEALIYGILLLQKKI 177 GCPP EA+I G ++L+ KI Sbjct: 148 GCPPRPEAVIDGFIMLKNKI 167 >gi|11988|emb|CAA34000.1| unnamed protein product [Oryza sativa Japonica Group] gi|226609|prf||1603356AF photosystem II G protein Length = 246 Score = 155 bits (393), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 68/140 (48%), Positives = 99/140 (70%), Gaps = 1/140 (0%) Query: 41 TSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAG 100 T++ L W+R SL + +G +CC +E R+D +R+G PR+SPRQ+D+++ AG Sbjct: 41 TTLKDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAG 100 Query: 101 TLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPVDIYVPGC 159 T+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++PVD+Y+PGC Sbjct: 101 TVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGC 160 Query: 160 PPTAEALIYGILLLQKKIRR 179 PP EA+I + L+KKI R Sbjct: 161 PPKPEAVIDALTKLRKKISR 180 >gi|325126869|ref|YP_004286106.1| NADH-plastoquinone oxidoreductase subunit K [Fragaria vesca subsp. vesca] gi|324022781|gb|ADY15355.1| NADH-plastoquinone oxidoreductase subunit K [Fragaria vesca subsp. vesca] Length = 226 Score = 155 bits (393), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 70/147 (47%), Positives = 100/147 (68%), Gaps = 1/147 (0%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93 T + T+ L W+R SL + +G +CC +E R+D +R+G PR+SPRQ+ Sbjct: 14 TQNSVISTTSSDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 73 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152 D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++PV Sbjct: 74 DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 133 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179 D+Y+PGCPP EA+I I L+KKI R Sbjct: 134 DVYLPGCPPKPEAVIDAITKLRKKISR 160 >gi|112253755|gb|ABI14476.1| NADH-plastoquinone oxidoreductase subunit K [Piper cenocladum] Length = 289 Score = 155 bits (393), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 68/147 (46%), Positives = 102/147 (69%), Gaps = 1/147 (0%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93 T + T+++ L W+R SL + +G +CC +E R+D +R+G PR+SPRQ+ Sbjct: 73 TQSSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 132 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152 D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++PV Sbjct: 133 DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 192 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179 D+Y+PGCPP EA++ I L+KK+ R Sbjct: 193 DVYLPGCPPKPEAILDAITKLRKKVSR 219 >gi|298373133|ref|ZP_06983123.1| NADH dehydrogenase I, B subunit [Bacteroidetes oral taxon 274 str. F0058] gi|298276037|gb|EFI17588.1| NADH dehydrogenase I, B subunit [Bacteroidetes oral taxon 274 str. F0058] Length = 204 Score = 155 bits (393), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 67/140 (47%), Positives = 96/140 (68%), Gaps = 1/140 (0%) Query: 40 VTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APRASPRQSDVMIV 98 + +D ++ W R+ S+ +TF +CC +E M R+D RFG+ R SPRQ+DV+ Sbjct: 38 IAKLDDIINWGRSNSVWPLTFATSCCGIEFMSLGAARFDFSRFGWEVTRNSPRQADVVFC 97 Query: 99 AGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPG 158 GT+ +KMA L+R+YDQM EP+YVI++G CA GG + SY V G D+I+PVD+YVPG Sbjct: 98 FGTIVHKMAPVLKRLYDQMSEPKYVIAVGGCAISGGPFKKSYHTVMGIDQIIPVDVYVPG 157 Query: 159 CPPTAEALIYGILLLQKKIR 178 CPP+ A+IYG+L L +KI+ Sbjct: 158 CPPSPNAIIYGMLQLSRKIK 177 >gi|169794077|ref|YP_001718441.1| NADH dehydrogenase subunit K [Manihot esculenta] gi|326909397|ref|YP_004327666.1| NADH dehydrogenase subunit K [Hevea brasiliensis] gi|218527912|sp|B1NWF4|NDHK_MANES RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K gi|157695889|gb|ABV66158.1| NADH-plastoquinone oxidoreductase subunit K [Manihot esculenta] gi|308523511|gb|ADO33561.1| NADH dehydrogenase subunit K [Hevea brasiliensis] Length = 225 Score = 155 bits (393), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 70/147 (47%), Positives = 101/147 (68%), Gaps = 1/147 (0%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93 T + T+ + L W+R SL + +G +CC +E R+D +R+G PR+SPRQ+ Sbjct: 13 TQISVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 72 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152 D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++PV Sbjct: 73 DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 132 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179 D+Y+PGCPP EA+I I L+KKI R Sbjct: 133 DVYLPGCPPKPEAVIDAITKLRKKISR 159 >gi|113200998|gb|ABI32513.1| NADH-plastoquinone oxidoreductase subunit K [Liriodendron tulipifera] Length = 285 Score = 155 bits (392), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 69/147 (46%), Positives = 101/147 (68%), Gaps = 1/147 (0%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93 T + T+ + L W+R SL + +G +CC +E R+D +R+G PR+SPRQ+ Sbjct: 73 TQNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 132 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152 D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++PV Sbjct: 133 DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 192 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179 D+Y+PGCPP EA+I I L+KK+ R Sbjct: 193 DVYLPGCPPKPEAVIDAITKLRKKVSR 219 >gi|154795221|ref|YP_740569.2| NADH-plastoquinone oxidoreductase subunit K [Platanus occidentalis] gi|218527952|sp|Q09G42|NDHK_PLAOC RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K Length = 225 Score = 155 bits (392), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 69/147 (46%), Positives = 101/147 (68%), Gaps = 1/147 (0%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93 T + T+ + L W+R SL + +G +CC +E R+D +R+G PR+SPRQ+ Sbjct: 13 TQNSVISTTPNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 72 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152 D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++PV Sbjct: 73 DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 132 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179 D+Y+PGCPP EA+I I L+KK+ R Sbjct: 133 DVYLPGCPPKPEAVIDAITKLRKKVSR 159 >gi|290790784|gb|ADD63041.1| NADH-plastoquinone oxidoreductase subunit K [Potamophila parviflora] Length = 253 Score = 155 bits (392), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 68/149 (45%), Positives = 102/149 (68%), Gaps = 1/149 (0%) Query: 32 EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPR 91 + + + T+ + L W+R SL + +G +CC +E R+D +R+G PR+SPR Sbjct: 39 QTSSNSVISTTPNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPR 98 Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIV 150 Q+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++ Sbjct: 99 QADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLI 158 Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRR 179 PVD+Y+PGCPP EA+I + L+KKI R Sbjct: 159 PVDVYLPGCPPKPEAVIDALTKLRKKISR 187 >gi|84682208|gb|ABC60462.1| NADH-plastoquinone oxidoreductase subunit K [Nuphar advena] Length = 283 Score = 155 bits (392), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 69/147 (46%), Positives = 102/147 (69%), Gaps = 1/147 (0%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93 T + T+++ L W+R SL + +G +CC +E R+D +R+G PR+SPRQ+ Sbjct: 71 TPNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 130 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152 D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++PV Sbjct: 131 DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 190 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179 D+Y+PGCPP EA+I I L+KK+ R Sbjct: 191 DVYLPGCPPKPEAIIDAITKLRKKVSR 217 >gi|82754631|gb|ABB90045.1| NADH dehydrogenase subunit K [Solanum tuberosum] Length = 284 Score = 155 bits (392), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 70/140 (50%), Positives = 100/140 (71%), Gaps = 1/140 (0%) Query: 41 TSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAG 100 T+++ L W+R SL + +G +CC +E R+D +R+G PR+SPRQSD+++ AG Sbjct: 79 TTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQSDLILTAG 138 Query: 101 TLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPVDIYVPGC 159 T+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++PVD+Y+PGC Sbjct: 139 TVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGC 198 Query: 160 PPTAEALIYGILLLQKKIRR 179 PP EA+I I L+KKI R Sbjct: 199 PPKPEAVIDAITKLRKKISR 218 >gi|154795223|ref|YP_052753.2| NADH dehydrogenase subunit K [Oryza nivara] gi|154795235|ref|YP_654218.2| NADH dehydrogenase subunit K [Oryza sativa Indica Group] gi|218511705|sp|Q6ENH0|NDHK_ORYNI RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K gi|218511706|sp|P0C341|NDHK_ORYSA RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K gi|218511707|sp|P0C342|NDHK_ORYSI RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K gi|218511708|sp|P0C343|NDHK_ORYSJ RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K gi|20146751|gb|AAM12487.1|AC074232_14 PSII G protein 5'-partial [Oryza sativa Japonica Group] Length = 225 Score = 155 bits (392), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 68/149 (45%), Positives = 102/149 (68%), Gaps = 1/149 (0%) Query: 32 EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPR 91 + + + T++ L W+R SL + +G +CC +E R+D +R+G PR+SPR Sbjct: 11 QTSSNSVISTTLKDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPR 70 Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIV 150 Q+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++ Sbjct: 71 QADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLI 130 Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRR 179 PVD+Y+PGCPP EA+I + L+KKI R Sbjct: 131 PVDVYLPGCPPKPEAVIDALTKLRKKISR 159 >gi|290489710|gb|ADD31239.1| NADH-plastoquinone oxidoreductase subunit K protein [Ehretia acuminata] Length = 284 Score = 155 bits (392), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 70/147 (47%), Positives = 102/147 (69%), Gaps = 1/147 (0%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93 T + T+++ L W+R SL + +G +CC +E R+D +R+G PR+SPRQ+ Sbjct: 72 TPNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 131 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152 D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++PV Sbjct: 132 DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 191 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179 D+Y+PGCPP EA+I I L+KKI R Sbjct: 192 DVYLPGCPPKPEAVIDAITKLRKKISR 218 >gi|149941520|dbj|BAF64944.1| NADH dehydrogenase subunit K [Cycas taitungensis] gi|156598045|gb|ABU85288.1| NADH-plastoquinone oxidoreductase subunit K [Cycas micronesica] Length = 319 Score = 155 bits (392), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 70/149 (46%), Positives = 103/149 (69%), Gaps = 1/149 (0%) Query: 32 EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPR 91 + T + T+++ L WAR SL + +G +CC +E R+D +R+G PR+SPR Sbjct: 69 QTTPNSVISTTLNDLSNWARLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPR 128 Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIV 150 Q+D++I AGT+T KMA +L R+Y+QMP P+YVI+MG+C GG + SYS VRG D+++ Sbjct: 129 QADLIITAGTVTMKMAPSLVRLYEQMPGPKYVIAMGACTITGGMFSTDSYSTVRGVDKLI 188 Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRR 179 PVD+Y+PGCPP EA+I I+ L+KK+ R Sbjct: 189 PVDVYLPGCPPKPEAIIDAIIKLRKKVAR 217 >gi|146277729|ref|YP_001167888.1| NADH dehydrogenase subunit B [Rhodobacter sphaeroides ATCC 17025] gi|238065015|sp|A4WT69|NUOB1_RHOS5 RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName: Full=NADH dehydrogenase I subunit B 1; AltName: Full=NDH-1 subunit B 1 gi|145555970|gb|ABP70583.1| NADH-quinone oxidoreductase, B subunit [Rhodobacter sphaeroides ATCC 17025] Length = 205 Score = 155 bits (392), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 79/140 (56%), Positives = 98/140 (70%), Gaps = 2/140 (1%) Query: 39 LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMI 97 L T +D LV W+R SL FGL+CC VEM A P YD RFG R++PRQ+D++I Sbjct: 22 LFTRLDDLVAWSRKHSLWPFNFGLSCCYVEMATALTPVYDQARFGAEVIRSTPRQADLLI 81 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 V+GT+ KMA L R+Y QM EPR+VISMG+CAN GG Y YSVV+G D +PVD+YVP Sbjct: 82 VSGTVFRKMAVPLYRLYQQMREPRWVISMGACANSGGMYDI-YSVVQGVDSFLPVDVYVP 140 Query: 158 GCPPTAEALIYGILLLQKKI 177 GCPP EAL+ ++LLQ KI Sbjct: 141 GCPPRPEALMEALVLLQSKI 160 >gi|114804269|ref|YP_762265.1| NADH-plastoquinone oxidoreductase subunit K [Morus indica] gi|78100321|gb|ABB20962.1| NADH-plastoquinone oxidoreductase subunit K [Morus indica] Length = 282 Score = 155 bits (392), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 70/147 (47%), Positives = 100/147 (68%), Gaps = 1/147 (0%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93 T + T+ L W+R SL + +G +CC +E R+D +R+G PR+SPRQ+ Sbjct: 70 TQNSVISTTSSDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 129 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152 D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++PV Sbjct: 130 DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 189 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179 D+Y+PGCPP EA+I I L+KKI R Sbjct: 190 DVYLPGCPPKPEAVIDAITKLRKKISR 216 >gi|113477002|ref|YP_723063.1| NADH dehydrogenase subunit B [Trichodesmium erythraeum IMS101] gi|123160442|sp|Q10YT4|NDHK_TRIEI RecName: Full=NAD(P)H-quinone oxidoreductase subunit K; AltName: Full=NAD(P)H dehydrogenase I subunit K; AltName: Full=NDH-1 subunit K; Short=NDH-K gi|110168050|gb|ABG52590.1| NADH-quinone oxidoreductase, B subunit [Trichodesmium erythraeum IMS101] Length = 240 Score = 155 bits (392), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 76/172 (44%), Positives = 110/172 (63%), Gaps = 11/172 (6%) Query: 7 NQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCA 66 NQKII+ +E+ +S I ++T+VD L WA+ SL + +G ACC Sbjct: 8 NQKIIN-----PIEESPTVTQELSENI-----VLTTVDDLYNWAKLSSLWPLLYGTACCF 57 Query: 67 VEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISM 126 +E R+D +RFG PR+SPRQ+D++I AGT+T K L R+Y+QMPEP+YVI+M Sbjct: 58 IEFAALIGSRFDFDRFGLVPRSSPRQADLLITAGTITMKYTPTLVRLYEQMPEPKYVIAM 117 Query: 127 GSCANGGGYYHY-SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 G+C GG + S + VRG D+++PVD+Y+PGCPP EA+I ++ L+KKI Sbjct: 118 GACTITGGMFSMDSPTAVRGVDKLIPVDVYIPGCPPRPEAIIDAVIKLRKKI 169 >gi|153004158|ref|YP_001378483.1| NADH dehydrogenase subunit B [Anaeromyxobacter sp. Fw109-5] gi|238065026|sp|A7H9V3|NUOB2_ANADF RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName: Full=NADH dehydrogenase I subunit B 2; AltName: Full=NDH-1 subunit B 2 gi|152027731|gb|ABS25499.1| NADH-quinone oxidoreductase, B subunit [Anaeromyxobacter sp. Fw109-5] Length = 183 Score = 155 bits (392), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 75/144 (52%), Positives = 103/144 (71%), Gaps = 2/144 (1%) Query: 36 KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQSD 94 +GFL V + + WAR SL F ACC +E M + RYDL+RFG A PR SPRQ+D Sbjct: 19 QGFLQGLVSKGLGWARKYSLFQYPFVTACCGMEFMTVASARYDLDRFGAALPRFSPRQAD 78 Query: 95 VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154 ++IV GT+ K A LRRVY+Q+ EP++V++ G CA+ GG+Y +Y+ V+G DRIVPVD+ Sbjct: 79 LLIVVGTVNCKQAPILRRVYEQIAEPKWVVAFGVCASSGGFYD-NYATVQGIDRIVPVDV 137 Query: 155 YVPGCPPTAEALIYGILLLQKKIR 178 Y+PGCPP E ++ GI+LLQ+KI+ Sbjct: 138 YIPGCPPRPEQVLDGIMLLQQKIQ 161 >gi|197131354|gb|ACH47195.1| NADH-plastoquinone oxidoreductase subunit K [Geranium carolinianum] Length = 225 Score = 155 bits (392), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 72/150 (48%), Positives = 102/150 (68%), Gaps = 1/150 (0%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93 T L T+ + L W+R SL + +G +CC +E R+D +R+G PR+SPRQ+ Sbjct: 13 TPNSVLSTTPNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 72 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152 D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++PV Sbjct: 73 DLVLTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 132 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGN 182 D+Y+PGCPP EA+I I L+KKI R N Sbjct: 133 DVYLPGCPPKPEAVIDAITKLRKKISREIN 162 >gi|260887648|ref|ZP_05898911.1| NADH dehydrogenase I, B subunit [Selenomonas sputigena ATCC 35185] gi|330838007|ref|YP_004412587.1| NADH-quinone oxidoreductase, B subunit [Selenomonas sputigena ATCC 35185] gi|260862664|gb|EEX77164.1| NADH dehydrogenase I, B subunit [Selenomonas sputigena ATCC 35185] gi|329745771|gb|AEB99127.1| NADH-quinone oxidoreductase, B subunit [Selenomonas sputigena ATCC 35185] Length = 169 Score = 155 bits (392), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 73/146 (50%), Positives = 104/146 (71%), Gaps = 1/146 (0%) Query: 35 HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQS 93 + +VTSVD + WAR+ S+ + GLACC++EMM + R+DL RFG+ RA PRQ+ Sbjct: 12 RENVIVTSVDAVFKWARSRSIWPLASGLACCSIEMMATAASRFDLARFGYEVFRACPRQA 71 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD 153 D++IVAGTLT KM L R+Y++MPEP+YVI+MG+C GG + SY+ V+ D ++PVD Sbjct: 72 DLLIVAGTLTWKMTPPLIRLYEEMPEPKYVIAMGNCNIHGGPFTDSYATVKCLDEVLPVD 131 Query: 154 IYVPGCPPTAEALIYGILLLQKKIRR 179 +Y+PGCPP EALI ++ L+ KI+ Sbjct: 132 LYLPGCPPRPEALIDAMIKLRNKIQH 157 >gi|154795227|ref|NP_904103.3| NADH dehydrogenase subunit K [Amborella trichopoda] gi|218527907|sp|Q70XZ9|NDHK_AMBTC RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K Length = 225 Score = 155 bits (392), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 69/147 (46%), Positives = 101/147 (68%), Gaps = 1/147 (0%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93 T + T+ + L W+R SL + +G +CC +E R+D +R+G PR+SPRQ+ Sbjct: 13 TPNSVISTTPNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 72 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152 D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++PV Sbjct: 73 DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 132 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179 D+Y+PGCPP EA+I I L+KK+ R Sbjct: 133 DVYLPGCPPKPEAIIDAITKLRKKVSR 159 >gi|139389268|ref|YP_001123034.1| photosystem II G protein [Aethionema grandiflorum] gi|218527880|sp|A4QJK3|NDHK_AETGR RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K gi|134286230|dbj|BAF49858.1| photosystem II G protein [Aethionema grandiflorum] Length = 229 Score = 155 bits (392), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 69/147 (46%), Positives = 101/147 (68%), Gaps = 1/147 (0%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93 T + T+++ L W+R SL + +G +CC +E R+D +R+G PR+SPRQ+ Sbjct: 13 TKNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 72 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152 D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++PV Sbjct: 73 DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 132 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179 D+Y+PGCPP EA+I I L+ KI R Sbjct: 133 DVYLPGCPPKPEAVIDAITKLRTKIAR 159 >gi|14017576|ref|NP_114263.1| NADH dehydrogenase subunit K [Triticum aestivum] gi|556460|gb|AAA84731.1| thylakoid membrane protein [Triticum aestivum] gi|13928209|dbj|BAB47038.1| NADH dehydrogenase 27kDa subunit [Triticum aestivum] Length = 245 Score = 155 bits (392), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 68/149 (45%), Positives = 102/149 (68%), Gaps = 1/149 (0%) Query: 32 EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPR 91 + + + T+ + L W+R SL + +G +CC +E R+D +R+G PR+SPR Sbjct: 31 QTSSNSVISTTPNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPR 90 Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIV 150 Q+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++ Sbjct: 91 QADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLI 150 Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRR 179 PVD+Y+PGCPP EA+I + L+KKI R Sbjct: 151 PVDVYLPGCPPKPEAVIDALTKLRKKISR 179 >gi|112032666|gb|ABH88301.1| NADH-plastoquinone oxidoreductase subunit K [Drimys granadensis] Length = 287 Score = 155 bits (392), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 69/147 (46%), Positives = 101/147 (68%), Gaps = 1/147 (0%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93 T + T+ + L W+R SL + +G +CC +E R+D +R+G PR+SPRQ+ Sbjct: 73 TQNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 132 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152 D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++PV Sbjct: 133 DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 192 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179 D+Y+PGCPP EA+I I L+KK+ R Sbjct: 193 DVYLPGCPPKPEAVIDAITKLRKKVSR 219 >gi|66876455|gb|AAY58009.1| NdhK [Dinetus truncatus] Length = 224 Score = 155 bits (392), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 69/142 (48%), Positives = 100/142 (70%), Gaps = 1/142 (0%) Query: 39 LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIV 98 + T+ + L W+R SL + +G +CC +E R+D +R+G PR+SPRQ+D+++ Sbjct: 18 ISTTFNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILT 77 Query: 99 AGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPVDIYVP 157 AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++PVD+Y+P Sbjct: 78 AGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLP 137 Query: 158 GCPPTAEALIYGILLLQKKIRR 179 GCPP EA+I I L+KKI R Sbjct: 138 GCPPKPEAVIDAITKLRKKISR 159 >gi|159106868|ref|YP_001531287.1| NADH-plastoquinone oxidoreductase subunit K [Lolium perenne] gi|158934402|emb|CAO85980.1| NADH-plastoquinone oxidoreductase subunit K [Lolium perenne] Length = 246 Score = 155 bits (392), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 68/149 (45%), Positives = 102/149 (68%), Gaps = 1/149 (0%) Query: 32 EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPR 91 + + + T+ + L W+R SL + +G +CC +E R+D +R+G PR+SPR Sbjct: 32 QTSSNSVISTTPNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPR 91 Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIV 150 Q+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++ Sbjct: 92 QADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLI 151 Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRR 179 PVD+Y+PGCPP EA+I + L+KKI R Sbjct: 152 PVDVYLPGCPPKPEAVIDALTKLRKKISR 180 >gi|290489716|gb|ADD31242.1| NADH-plastoquinone oxidoreductase subunit K protein [Meliosma aff. cuneifolia Moore 333] Length = 285 Score = 155 bits (392), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 69/147 (46%), Positives = 101/147 (68%), Gaps = 1/147 (0%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93 T + T+ + L W+R SL + +G +CC +E R+D +R+G PR+SPRQ+ Sbjct: 73 TQNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 132 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152 D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++PV Sbjct: 133 DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 192 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179 D+Y+PGCPP EA+I I L+KK+ R Sbjct: 193 DVYLPGCPPKPEAVIDAITKLRKKVSR 219 >gi|225544128|ref|YP_002720116.1| ndhK [Jatropha curcas] gi|224979569|gb|ACN72696.1| ndhK [Jatropha curcas] Length = 225 Score = 155 bits (392), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 70/149 (46%), Positives = 102/149 (68%), Gaps = 1/149 (0%) Query: 32 EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPR 91 + T + T+ + L W+R SL + +G +CC +E R+D +R+G PR+SPR Sbjct: 11 QTTKISVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPR 70 Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIV 150 Q+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++ Sbjct: 71 QADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLI 130 Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRR 179 PVD+Y+PGCPP EA+I I L+KKI R Sbjct: 131 PVDVYLPGCPPKPEAVIDAITKLRKKISR 159 >gi|218527904|sp|A6MM40|NDHK_BUXMI RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K Length = 200 Score = 155 bits (392), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 69/147 (46%), Positives = 101/147 (68%), Gaps = 1/147 (0%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93 T + T+ + L W+R SL + +G +CC +E R+D +R+G PR+SPRQ+ Sbjct: 13 TQNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 72 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152 D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++PV Sbjct: 73 DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 132 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179 D+Y+PGCPP EA+I I L+KK+ R Sbjct: 133 DVYLPGCPPKPEAVIDAITKLRKKVSR 159 >gi|156598545|gb|ABU85530.1| NADH-plastoquinone oxidoreductase subunit K [Passiflora biflora] Length = 237 Score = 155 bits (392), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 70/142 (49%), Positives = 99/142 (69%), Gaps = 1/142 (0%) Query: 39 LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIV 98 + T+ + L WAR SL + +G +CC +E R+D +R+G PR+SPRQ+D+++ Sbjct: 25 ISTTPNDLSNWARLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILT 84 Query: 99 AGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPVDIYVP 157 AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++PVD Y+P Sbjct: 85 AGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDAYLP 144 Query: 158 GCPPTAEALIYGILLLQKKIRR 179 GCPP EA+I I L+KKI R Sbjct: 145 GCPPKPEAVIDAITKLRKKISR 166 >gi|296936675|gb|ADH94347.1| NADH-plastoquinone oxidoreductase subunit K [Syzygium cumini] Length = 284 Score = 155 bits (392), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 70/147 (47%), Positives = 101/147 (68%), Gaps = 1/147 (0%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93 T + T+ + L W+R SL + +G +CC +E R+D +R+G PR+SPRQ+ Sbjct: 72 TQNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 131 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152 D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++PV Sbjct: 132 DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 191 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179 D+Y+PGCPP EA+I I L+KKI R Sbjct: 192 DVYLPGCPPKPEAVIDAITKLRKKIAR 218 >gi|290489738|gb|ADD31253.1| NADH-plastoquinone oxidoreductase subunit K protein [Liquidambar styraciflua] Length = 285 Score = 155 bits (392), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 70/147 (47%), Positives = 101/147 (68%), Gaps = 1/147 (0%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93 T + T+ + L W+R SL + +G +CC +E R+D +R+G PR+SPRQ+ Sbjct: 73 TQNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 132 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152 D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++PV Sbjct: 133 DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 192 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179 D+Y+PGCPP EA+I I L+KKI R Sbjct: 193 DVYLPGCPPKPEAVIDAITKLRKKISR 219 >gi|73670849|ref|YP_306864.1| F420H2 dehydrogenase subunit B [Methanosarcina barkeri str. Fusaro] gi|72398011|gb|AAZ72284.1| F420H2 dehydrogenase subunit B [Methanosarcina barkeri str. Fusaro] Length = 184 Score = 155 bits (392), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 73/174 (41%), Positives = 109/174 (62%), Gaps = 3/174 (1%) Query: 6 VNQKIISGQSSCSLEKVDADFSRISSEITHKGFLV-TSVDQLVTWARTGSLMWMTFGLAC 64 V +K S S E++ + S+ I+ FL T V ++ W R SL +MT + C Sbjct: 4 VKEKKTSKPYETSEEEIPGVITTTSNAISE--FLKKTKVQDIINWGRKNSLWFMTQPMGC 61 Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C VEM+ YD +RFG PR SPRQ+DVM+++G +T K AL+R+++QMP P++VI Sbjct: 62 CGVEMIAMGCAHYDTDRFGIIPRNSPRQADVMLISGYVTKKYLPALKRLWEQMPSPKWVI 121 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 + G C+ GG ++ SYS V+ D I P+D++VPGCPP EA++ G + LQ+KI+ Sbjct: 122 AFGDCSISGGPFYESYSTVQNIDEIFPIDVFVPGCPPRPEAMLQGFVELQEKIK 175 >gi|218527896|sp|B2XWK8|NDHK_FAGEA RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K Length = 225 Score = 155 bits (392), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 70/146 (47%), Positives = 101/146 (69%), Gaps = 1/146 (0%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 IT + T+ + L W+R SL + +G +CC +E R+D +R+G PR+SPRQ Sbjct: 12 ITPNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQ 71 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVP 151 +D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++P Sbjct: 72 ADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIP 131 Query: 152 VDIYVPGCPPTAEALIYGILLLQKKI 177 VD+Y+PGCPP EA+I I L+KKI Sbjct: 132 VDVYLPGCPPKPEAVIDAITKLRKKI 157 >gi|309322236|ref|YP_003934314.1| NADH-plastoquinone oxidoreductase subunit K [Monsonia speciosa] gi|197131360|gb|ACH47198.1| NADH-plastoquinone oxidoreductase subunit K [Monsonia speciosa] gi|300069329|gb|ADJ66449.1| NADH-plastoquinone oxidoreductase subunit K [Monsonia speciosa] Length = 225 Score = 155 bits (392), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 71/147 (48%), Positives = 100/147 (68%), Gaps = 1/147 (0%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93 T L T+ L W+R SL + +G +CC +E R+D +R+G PR+SPRQ+ Sbjct: 13 TQNSVLSTTSTDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 72 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152 D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++PV Sbjct: 73 DLVLTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 132 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179 D+Y+PGCPP EA+I I L+KKI R Sbjct: 133 DVYLPGCPPKPEAVIDAITKLRKKIAR 159 >gi|66876438|gb|AAY57998.1| NdhK [Jacquemontia tamnifolia] Length = 224 Score = 155 bits (392), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 68/149 (45%), Positives = 101/149 (67%), Gaps = 1/149 (0%) Query: 32 EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPR 91 + + T++ L W+R SL + +G +CC +E R+D +R+G PR+SPR Sbjct: 11 QTAKNSVISTTLTDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPR 70 Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIV 150 Q+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++ Sbjct: 71 QADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLI 130 Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRR 179 PVD+Y+PGCPP EA++ I L+KKI R Sbjct: 131 PVDVYLPGCPPKPEAILDAITKLRKKISR 159 >gi|319789707|ref|YP_004151340.1| NADH-quinone oxidoreductase, B subunit [Thermovibrio ammonificans HB-1] gi|317114209|gb|ADU96699.1| NADH-quinone oxidoreductase, B subunit [Thermovibrio ammonificans HB-1] Length = 157 Score = 155 bits (391), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 67/145 (46%), Positives = 100/145 (68%), Gaps = 1/145 (0%) Query: 35 HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSD 94 +G +T + L+ W R G+L + F ACC +EMM A+ RYD +RFG R +PRQ D Sbjct: 4 REGVFLTKLQDLINWGRKGALWPLAFATACCGIEMMAAAASRYDFDRFGVIFRNTPRQCD 63 Query: 95 VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154 ++I+ GT++ KMA ++R++DQMP+P++ I++GSCA G + +YS +RG D IVPVD+ Sbjct: 64 LLIMCGTISRKMAPIIKRLWDQMPDPKWAIAIGSCAISGNIFQ-TYSTLRGLDCIVPVDV 122 Query: 155 YVPGCPPTAEALIYGILLLQKKIRR 179 YVPGC P EA +++LQ+KI+R Sbjct: 123 YVPGCAPKPEAFYEALIMLQEKIKR 147 >gi|294496248|ref|YP_003542741.1| F420H2 dehydrogenase subunit B [Methanohalophilus mahii DSM 5219] gi|292667247|gb|ADE37096.1| F420H2 dehydrogenase subunit B [Methanohalophilus mahii DSM 5219] Length = 191 Score = 155 bits (391), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 69/149 (46%), Positives = 95/149 (63%) Query: 30 SSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS 89 +S+ +K T + W R SL +M + CC VE++ M D +RFG PR S Sbjct: 32 TSQEINKFLQKTKAQDFINWGRKNSLWFMAQAMGCCGVEIIVTGMSPMDTDRFGIIPRNS 91 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQ+DVMI++G +T K AL+++YDQMP P++VI MG C+ GG ++ SYS V+ D I Sbjct: 92 PRQADVMIISGYVTKKYLPALKKLYDQMPSPKWVICMGDCSISGGPFYESYSTVQNIDEI 151 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIR 178 PVD+++PGCPP EALI G L +QKKI Sbjct: 152 FPVDVFIPGCPPRPEALIQGFLEIQKKIE 180 >gi|156598694|gb|ABU85602.1| NADH-plastoquinone oxidoreductase subunit K [Scaevola aemula] Length = 222 Score = 155 bits (391), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 69/147 (46%), Positives = 101/147 (68%), Gaps = 1/147 (0%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93 T + T+++ L W+R SL + +G +CC +E R+D +R+G PR+SPRQ+ Sbjct: 10 TQNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 69 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152 D+++ AGT+T KM +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++PV Sbjct: 70 DLILTAGTVTMKMGPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 129 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179 D+Y+PGCPP EA+I I L+KKI R Sbjct: 130 DVYLPGCPPKPEAVIDAITKLRKKISR 156 >gi|118430306|ref|YP_874740.1| NADH-plastoquinone oxidoreductase subunit K [Agrostis stolonifera] gi|118201215|gb|ABK79584.1| NADH-plastoquinone oxidoreductase subunit K [Agrostis stolonifera] Length = 245 Score = 155 bits (391), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 68/149 (45%), Positives = 102/149 (68%), Gaps = 1/149 (0%) Query: 32 EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPR 91 + + + T+ + L W+R SL + +G +CC +E R+D +R+G PR+SPR Sbjct: 31 QTSSNSVISTTPNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPR 90 Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIV 150 Q+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++ Sbjct: 91 QADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLI 150 Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRR 179 PVD+Y+PGCPP EA+I + L+KKI R Sbjct: 151 PVDVYLPGCPPKPEAVIDALTKLRKKISR 179 >gi|290489740|gb|ADD31254.1| NADH-plastoquinone oxidoreductase subunit K protein [Oxalis latifolia] Length = 246 Score = 155 bits (391), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 69/147 (46%), Positives = 101/147 (68%), Gaps = 1/147 (0%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93 T + T+ + L W+R SL + +G +CC +E R+D +R+G PR+SPRQ+ Sbjct: 34 TKNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 93 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152 D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++PV Sbjct: 94 DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 153 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179 D+Y+PGCPP EA+I I L+KKI + Sbjct: 154 DVYLPGCPPKPEAVIDAITKLRKKISQ 180 >gi|254283162|ref|ZP_04958130.1| NADH dehydrogenase i, b subunit [gamma proteobacterium NOR51-B] gi|219679365|gb|EED35714.1| NADH dehydrogenase i, b subunit [gamma proteobacterium NOR51-B] Length = 214 Score = 155 bits (391), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 71/148 (47%), Positives = 102/148 (68%), Gaps = 2/148 (1%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RAS 89 +E + + ++ L+ W R SL FGL+CC VEM + R+D+ RFG RA+ Sbjct: 24 AEQIRRNVMFARLEDLIAWGRAHSLWPFNFGLSCCYVEMATSFTSRHDIARFGSEVIRAT 83 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQ+D+M+++GT+ KMA ++ +YDQ+ EPR++ISMGSCAN GG Y YSVV+G D+ Sbjct: 84 PRQADLMVISGTVFRKMAPVVQHLYDQLLEPRWIISMGSCANSGGMYDI-YSVVQGVDKF 142 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKI 177 +PVD+YVPGCPP EAL+ G+++LQ I Sbjct: 143 IPVDVYVPGCPPRPEALMQGLMMLQDAI 170 >gi|154795236|ref|NP_039387.2| NADH dehydrogenase subunit K [Oryza sativa Japonica Group] Length = 225 Score = 155 bits (391), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 68/140 (48%), Positives = 99/140 (70%), Gaps = 1/140 (0%) Query: 41 TSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAG 100 T++ L W+R SL + +G +CC +E R+D +R+G PR+SPRQ+D+++ AG Sbjct: 20 TTLKDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAG 79 Query: 101 TLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPVDIYVPGC 159 T+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++PVD+Y+PGC Sbjct: 80 TVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGC 139 Query: 160 PPTAEALIYGILLLQKKIRR 179 PP EA+I + L+KKI R Sbjct: 140 PPKPEAVIDALTKLRKKISR 159 >gi|218176248|ref|YP_002364505.1| NADH-plastoquinone oxidoreductase subunit K [Festuca arundinacea] gi|215882332|gb|ACJ70762.1| NADH-plastoquinone oxidoreductase subunit K [Festuca arundinacea] Length = 246 Score = 155 bits (391), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 68/140 (48%), Positives = 99/140 (70%), Gaps = 1/140 (0%) Query: 41 TSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAG 100 T+ + L W+R SL + +G +CC +E R+D +R+G PR+SPRQ+D+++ AG Sbjct: 41 TTPNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAG 100 Query: 101 TLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPVDIYVPGC 159 T+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++PVD+Y+PGC Sbjct: 101 TVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGC 160 Query: 160 PPTAEALIYGILLLQKKIRR 179 PP EA+I + L+KKI R Sbjct: 161 PPKPEAVIDALTKLRKKISR 180 >gi|218527961|sp|A8Y9H4|NDHK_LOLPR RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K Length = 225 Score = 155 bits (391), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 68/149 (45%), Positives = 102/149 (68%), Gaps = 1/149 (0%) Query: 32 EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPR 91 + + + T+ + L W+R SL + +G +CC +E R+D +R+G PR+SPR Sbjct: 11 QTSSNSVISTTPNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPR 70 Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIV 150 Q+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++ Sbjct: 71 QADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLI 130 Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRR 179 PVD+Y+PGCPP EA+I + L+KKI R Sbjct: 131 PVDVYLPGCPPKPEAVIDALTKLRKKISR 159 >gi|290790852|gb|ADD63108.1| NADH-plastoquinone oxidoreductase subunit K [Microlaena stipoides] Length = 253 Score = 155 bits (391), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 68/149 (45%), Positives = 102/149 (68%), Gaps = 1/149 (0%) Query: 32 EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPR 91 + + + T+ + L W+R SL + +G +CC +E R+D +R+G PR+SPR Sbjct: 39 QTSSNSVISTTPNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPR 98 Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIV 150 Q+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++ Sbjct: 99 QADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLI 158 Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRR 179 PVD+Y+PGCPP EA+I + L+KKI R Sbjct: 159 PVDVYLPGCPPKPEAVIDALTKLRKKIAR 187 >gi|139389805|ref|YP_001123466.1| NADH dehydrogenase subunit K [Crucihimalaya wallichii] gi|218527886|sp|A4QKT5|NDHK_CRUWA RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K gi|134286667|dbj|BAF50290.1| photosystem II G protein [Crucihimalaya wallichii] Length = 225 Score = 155 bits (391), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 69/147 (46%), Positives = 101/147 (68%), Gaps = 1/147 (0%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93 T + T+++ L W+ SL + +G +CC +E R+D +R+G PR+SPRQ+ Sbjct: 13 TKNSVISTTLNDLSNWSELSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 72 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152 D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++PV Sbjct: 73 DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 132 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179 D+Y+PGCPP EA+I I L+KKI R Sbjct: 133 DVYLPGCPPKPEAVIDAITKLRKKIAR 159 >gi|162448793|ref|YP_001611160.1| NADH dehydrogenase (ubiquinone) [Sorangium cellulosum 'So ce 56'] gi|238065021|sp|A9GUX6|NUOB1_SORC5 RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName: Full=NADH dehydrogenase I subunit B 1; AltName: Full=NDH-1 subunit B 1 gi|161159375|emb|CAN90680.1| NADH dehydrogenase (ubiquinone) [Sorangium cellulosum 'So ce 56'] Length = 194 Score = 155 bits (391), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 70/149 (46%), Positives = 104/149 (69%), Gaps = 2/149 (1%) Query: 32 EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASP 90 E + GF T VD L+ WA+ SL F ACC +E M + PR+D+ RFG PR SP Sbjct: 15 EGSEHGFATTRVDALLNWAKKYSLFQYPFVTACCGMEYMAMASPRFDMARFGAEVPRFSP 74 Query: 91 RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150 RQ+D++ V GT++ + A AL+R+Y+QM +P++V++ G+CA+ GG+Y +Y+ V G D+++ Sbjct: 75 RQADLLWVVGTISQRQAPALKRIYEQMADPKWVLAFGTCASCGGFYD-NYTTVAGIDKVI 133 Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRR 179 P D+YVPGCPP EA++ G++LLQ KI R Sbjct: 134 PCDVYVPGCPPRPEAVLDGLMLLQDKIAR 162 >gi|254480961|ref|ZP_05094207.1| NADH-quinone oxidoreductase, B subunit subfamily, putative [marine gamma proteobacterium HTCC2148] gi|41582331|gb|AAS07945.1| NADH-quinone oxidoreductase, B subunit [uncultured marine bacterium 463] gi|214038756|gb|EEB79417.1| NADH-quinone oxidoreductase, B subunit subfamily, putative [marine gamma proteobacterium HTCC2148] Length = 214 Score = 155 bits (391), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 71/150 (47%), Positives = 101/150 (67%), Gaps = 2/150 (1%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RAS 89 E + ++ L+ W R SL FGL+CC VEM + R+D+ RFG RA+ Sbjct: 24 EEQIKRNVFFARLEDLIAWGRAHSLWPFNFGLSCCYVEMATSFTSRHDIARFGSEVIRAT 83 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQ+D+M+++GT+ KMA ++ +YDQ+ EPR++ISMGSCAN GG Y YSVV+G D+ Sbjct: 84 PRQADLMVISGTVFRKMAPVVQHLYDQLLEPRWIISMGSCANSGGMYDI-YSVVQGVDKF 142 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRR 179 +PVD+YVPGCPP EAL+ G+++LQ I + Sbjct: 143 IPVDVYVPGCPPRPEALMQGLMMLQDAIEQ 172 >gi|218511715|sp|P26304|NDHK_WHEAT RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K Length = 225 Score = 155 bits (391), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 68/149 (45%), Positives = 102/149 (68%), Gaps = 1/149 (0%) Query: 32 EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPR 91 + + + T+ + L W+R SL + +G +CC +E R+D +R+G PR+SPR Sbjct: 11 QTSSNSVISTTPNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPR 70 Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIV 150 Q+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++ Sbjct: 71 QADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLI 130 Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRR 179 PVD+Y+PGCPP EA+I + L+KKI R Sbjct: 131 PVDVYLPGCPPKPEAVIDALTKLRKKISR 159 >gi|242910158|ref|YP_002970648.1| NADH-plastoquinone oxidoreductase subunit K [Alsophila spinulosa] gi|218454827|gb|ACK77164.1| NADH-plastoquinone oxidoreductase subunit K [Alsophila spinulosa] Length = 251 Score = 155 bits (391), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 66/142 (46%), Positives = 100/142 (70%), Gaps = 1/142 (0%) Query: 39 LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIV 98 L+ +++ W+R SL + +G +CC +E R+D +R+G PR+SPRQ+D+++ Sbjct: 41 LLANINDFSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLIVT 100 Query: 99 AGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPVDIYVP 157 AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++PVD+Y+P Sbjct: 101 AGTITMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDLYLP 160 Query: 158 GCPPTAEALIYGILLLQKKIRR 179 GCPP EA+I + L+KK+ R Sbjct: 161 GCPPKPEAIIDAVTKLRKKMAR 182 >gi|74381713|emb|CAI53798.1| photosystem II G protein [Acorus calamus] gi|156573647|gb|ABU85157.1| NADH-plastoquinone oxidoreductase subunit K [Acorus americanus] Length = 297 Score = 155 bits (391), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 69/147 (46%), Positives = 102/147 (69%), Gaps = 1/147 (0%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93 T + T+++ L W+R SL + +G +CC +E R+D +R+G PR+SPRQ+ Sbjct: 71 TPNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 130 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152 D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++PV Sbjct: 131 DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 190 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179 D+Y+PGCPP EA+I I L+KK+ R Sbjct: 191 DVYLPGCPPKPEAVIDAITKLRKKLSR 217 >gi|156598201|gb|ABU85364.1| NADH-plastoquinone oxidoreductase subunit K [Elaeis oleifera] Length = 287 Score = 155 bits (391), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 69/149 (46%), Positives = 103/149 (69%), Gaps = 1/149 (0%) Query: 32 EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPR 91 + T + T+ + L W+R SL + +G +CC +E R+D +R+G P++SPR Sbjct: 70 QTTPNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPKSSPR 129 Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIV 150 Q+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++ Sbjct: 130 QADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLI 189 Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRR 179 PVD+Y+PGCPP EA+I I+ L+KKI R Sbjct: 190 PVDVYLPGCPPKPEAVIDAIMKLRKKISR 218 >gi|194033153|ref|YP_002000491.1| NADH dehydrogenase subunit K [Brachypodium distachyon] gi|193075561|gb|ACF08644.1| NADH dehydrogenase 27kDa subunit [Brachypodium distachyon] Length = 245 Score = 154 bits (390), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 68/149 (45%), Positives = 102/149 (68%), Gaps = 1/149 (0%) Query: 32 EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPR 91 + + + T+ + L W+R SL + +G +CC +E R+D +R+G PR+SPR Sbjct: 31 QTSSNSVISTTPNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPR 90 Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIV 150 Q+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++ Sbjct: 91 QADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLI 150 Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRR 179 PVD+Y+PGCPP EA+I + L+KKI R Sbjct: 151 PVDVYLPGCPPKPEAVIDALTKLRKKISR 179 >gi|12427|emb|CAA35482.1| unnamed protein product [Zea mays] gi|552735|gb|AAA84484.1| PSII-G [Zea mays] gi|48478677|gb|AAT44697.1| NADH dehydrogenase subunit K [Saccharum hybrid cultivar SP80-3280] gi|49659516|dbj|BAD27297.1| NADH dehydrogenase 27kD subunit [Saccharum hybrid cultivar NCo 310] gi|118201130|gb|ABK79500.1| NADH-plastoquinone oxidoreductase subunit K [Sorghum bicolor] Length = 248 Score = 154 bits (390), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 68/149 (45%), Positives = 102/149 (68%), Gaps = 1/149 (0%) Query: 32 EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPR 91 + + + T+ + L W+R SL + +G +CC +E R+D +R+G PR+SPR Sbjct: 32 QTSSNSVISTTPNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPR 91 Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIV 150 Q+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++ Sbjct: 92 QADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLI 151 Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRR 179 PVD+Y+PGCPP EA+I + L+KKI R Sbjct: 152 PVDVYLPGCPPKPEAVIDALTKLRKKIAR 180 >gi|290489746|gb|ADD31257.1| NADH-plastoquinone oxidoreductase subunit K protein [Staphylea colchica] Length = 226 Score = 154 bits (390), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 69/142 (48%), Positives = 100/142 (70%), Gaps = 1/142 (0%) Query: 39 LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIV 98 + T+ + L W+R SL + +G +CC +E R+D +R+G PR+SPRQ+D+++ Sbjct: 18 ISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILT 77 Query: 99 AGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPVDIYVP 157 AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++PVD+Y+P Sbjct: 78 AGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLP 137 Query: 158 GCPPTAEALIYGILLLQKKIRR 179 GCPP EA+I I L+KKI R Sbjct: 138 GCPPKPEAVIDAITKLRKKISR 159 >gi|218527903|sp|B3TN55|NDHK_BRADI RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K Length = 225 Score = 154 bits (390), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 68/149 (45%), Positives = 102/149 (68%), Gaps = 1/149 (0%) Query: 32 EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPR 91 + + + T+ + L W+R SL + +G +CC +E R+D +R+G PR+SPR Sbjct: 11 QTSSNSVISTTPNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPR 70 Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIV 150 Q+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++ Sbjct: 71 QADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLI 130 Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRR 179 PVD+Y+PGCPP EA+I + L+KKI R Sbjct: 131 PVDVYLPGCPPKPEAVIDALTKLRKKISR 159 >gi|20068335|emb|CAC88048.1| NADH dehydrogenase 32kD subunit [Atropa belladonna] Length = 284 Score = 154 bits (390), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 69/140 (49%), Positives = 100/140 (71%), Gaps = 1/140 (0%) Query: 41 TSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAG 100 T+++ L W+R SL + +G +CC +E R+D +R+G PR+SPRQ+D+++ AG Sbjct: 79 TTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAG 138 Query: 101 TLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPVDIYVPGC 159 T+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++PVD+Y+PGC Sbjct: 139 TVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGC 198 Query: 160 PPTAEALIYGILLLQKKIRR 179 PP EA+I I L+KKI R Sbjct: 199 PPKPEAVIDAITKLRKKISR 218 >gi|218527906|sp|A1EA12|NDHK_AGRST RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K Length = 225 Score = 154 bits (390), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 68/149 (45%), Positives = 102/149 (68%), Gaps = 1/149 (0%) Query: 32 EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPR 91 + + + T+ + L W+R SL + +G +CC +E R+D +R+G PR+SPR Sbjct: 11 QTSSNSVISTTPNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPR 70 Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIV 150 Q+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++ Sbjct: 71 QADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLI 130 Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRR 179 PVD+Y+PGCPP EA+I + L+KKI R Sbjct: 131 PVDVYLPGCPPKPEAVIDALTKLRKKISR 159 >gi|80750929|dbj|BAE48005.1| NADH dehydrogenase 27kD subunit [Nicotiana tomentosiformis] Length = 284 Score = 154 bits (390), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 69/140 (49%), Positives = 100/140 (71%), Gaps = 1/140 (0%) Query: 41 TSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAG 100 T+++ L W+R SL + +G +CC +E R+D +R+G PR+SPRQ+D+++ AG Sbjct: 79 TTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAG 138 Query: 101 TLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPVDIYVPGC 159 T+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++PVD+Y+PGC Sbjct: 139 TVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGC 198 Query: 160 PPTAEALIYGILLLQKKIRR 179 PP EA+I I L+KKI R Sbjct: 199 PPKPEAVIDAITKLRKKISR 218 >gi|116617112|ref|YP_817486.1| NADH-plastoquinone oxidoreductase subunit K [Coffea arabica] gi|122153625|sp|A0A339|NDHK_COFAR RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K gi|116242168|gb|ABJ89683.1| NADH-plastoquinone oxidoreductase subunit K [Coffea arabica] Length = 229 Score = 154 bits (390), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 68/142 (47%), Positives = 100/142 (70%), Gaps = 1/142 (0%) Query: 39 LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIV 98 + T+++ W+R SL + +G +CC +E R+D +R+G PR+SPRQ+D+++ Sbjct: 18 ISTTLNDFSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILT 77 Query: 99 AGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPVDIYVP 157 AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++PVD+Y+P Sbjct: 78 AGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLP 137 Query: 158 GCPPTAEALIYGILLLQKKIRR 179 GCPP EA+I I L+KKI R Sbjct: 138 GCPPKPEAVIDAITKLRKKISR 159 >gi|159161164|ref|YP_001542451.1| NADH-plastoquinone oxidoreductase subunit K [Ceratophyllum demersum] gi|148508447|gb|ABQ81454.1| NADH-plastoquinone oxidoreductase subunit K [Ceratophyllum demersum] gi|227481123|emb|CAP62502.1| photosystem II G protein [Ceratophyllum demersum] Length = 249 Score = 154 bits (390), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 68/147 (46%), Positives = 101/147 (68%), Gaps = 1/147 (0%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93 T + T+ + L W+R SL + +G +CC +E R+D +R+G PR+SPRQ+ Sbjct: 34 TKNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 93 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152 D+++ AGT+T KMA +L R+Y+QMP+P+YVI+MG+C GG + SYS VRG D+++PV Sbjct: 94 DLILTAGTITMKMAPSLVRLYEQMPKPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 153 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179 D+Y+PGCPP EA+I I L+KK+ R Sbjct: 154 DVYLPGCPPKPEAVIDAITKLRKKVSR 180 >gi|218527901|sp|A8SEA7|NDHK_CERDE RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K Length = 228 Score = 154 bits (390), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 68/147 (46%), Positives = 101/147 (68%), Gaps = 1/147 (0%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93 T + T+ + L W+R SL + +G +CC +E R+D +R+G PR+SPRQ+ Sbjct: 13 TKNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 72 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152 D+++ AGT+T KMA +L R+Y+QMP+P+YVI+MG+C GG + SYS VRG D+++PV Sbjct: 73 DLILTAGTITMKMAPSLVRLYEQMPKPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 132 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179 D+Y+PGCPP EA+I I L+KK+ R Sbjct: 133 DVYLPGCPPKPEAVIDAITKLRKKVSR 159 >gi|902226|emb|CAA60290.1| ndhK [Zea mays] Length = 248 Score = 154 bits (390), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 68/149 (45%), Positives = 102/149 (68%), Gaps = 1/149 (0%) Query: 32 EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPR 91 + + + T+ + L W+R SL + +G +CC +E R+D +R+G PR+SPR Sbjct: 32 QTSSNSVISTTPNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPR 91 Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIV 150 Q+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++ Sbjct: 92 QADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLI 151 Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRR 179 PVD+Y+PGCPP EA+I + L+KKI R Sbjct: 152 PVDVYLPGCPPKPEAVIDALTKLRKKIAR 180 >gi|149390544|ref|YP_001294188.1| NADH-plastoquinone oxidoreductase subunit K [Buxus microphylla] gi|146762289|gb|ABQ45253.1| NADH-plastoquinone oxidoreductase subunit K [Buxus microphylla] Length = 257 Score = 154 bits (390), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 69/147 (46%), Positives = 101/147 (68%), Gaps = 1/147 (0%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93 T + T+ + L W+R SL + +G +CC +E R+D +R+G PR+SPRQ+ Sbjct: 70 TQNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 129 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152 D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++PV Sbjct: 130 DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 189 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179 D+Y+PGCPP EA+I I L+KK+ R Sbjct: 190 DVYLPGCPPKPEAVIDAITKLRKKVSR 216 >gi|34481633|emb|CAD45111.1| photosystem II G protein [Amborella trichopoda] Length = 283 Score = 154 bits (390), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 69/147 (46%), Positives = 101/147 (68%), Gaps = 1/147 (0%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93 T + T+ + L W+R SL + +G +CC +E R+D +R+G PR+SPRQ+ Sbjct: 71 TPNSVISTTPNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 130 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152 D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++PV Sbjct: 131 DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 190 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179 D+Y+PGCPP EA+I I L+KK+ R Sbjct: 191 DVYLPGCPPKPEAIIDAITKLRKKVSR 217 >gi|156598283|gb|ABU85403.1| NADH-plastoquinone oxidoreductase subunit K [Ginkgo biloba] Length = 288 Score = 154 bits (390), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 71/154 (46%), Positives = 104/154 (67%), Gaps = 1/154 (0%) Query: 27 SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP 86 S + + T + T+ + + WAR SL + +G +CC++E R+D +R+G P Sbjct: 64 SPLPNRTTPNSVISTTPNDMSNWARLTSLWPLLYGTSCCSIEFASLIGSRFDFDRYGLVP 123 Query: 87 RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRG 145 R+SPRQ+D++I AGT+T KMA +L R+Y+QMPEPRYVI+MG+C GG + SYS VRG Sbjct: 124 RSSPRQADLIITAGTVTMKMAPSLVRLYEQMPEPRYVIAMGACTITGGMFSTDSYSTVRG 183 Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179 D+++PVD+Y+PGCPP E +I I L++KI R Sbjct: 184 VDKLIPVDVYLPGCPPKPEVIIDAITKLREKIAR 217 >gi|114054388|gb|ABI49782.1| NADH-plastoquinone oxidoreductase subunit K [Platanus occidentalis] Length = 285 Score = 154 bits (390), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 69/147 (46%), Positives = 101/147 (68%), Gaps = 1/147 (0%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93 T + T+ + L W+R SL + +G +CC +E R+D +R+G PR+SPRQ+ Sbjct: 73 TQNSVISTTPNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 132 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152 D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++PV Sbjct: 133 DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 192 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179 D+Y+PGCPP EA+I I L+KK+ R Sbjct: 193 DVYLPGCPPKPEAVIDAITKLRKKVSR 219 >gi|21672438|ref|NP_660505.1| NADH dehydrogenase subunit B [Buchnera aphidicola str. Sg (Schizaphis graminum)] gi|25008859|sp|Q8K9Y6|NUOB_BUCAP RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|21623050|gb|AAM67716.1| NADH dehydrogenase I chain B [Buchnera aphidicola str. Sg (Schizaphis graminum)] Length = 223 Score = 154 bits (389), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 76/142 (53%), Positives = 99/142 (69%), Gaps = 2/142 (1%) Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95 G + + ++V W R SL FGL+CC VEM+ A +D+ RFG RASPRQ+DV Sbjct: 39 GKVTKLLHKIVNWGRKNSLWPYNFGLSCCYVEMVTAFTSVHDVARFGSEVLRASPRQADV 98 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155 M++AGT KMA ++R+YDQM EP++VISMG+CAN GG Y YSVV+G D+ +PVDIY Sbjct: 99 MVIAGTPFIKMAPVIQRLYDQMLEPKWVISMGACANSGGMYDI-YSVVQGVDKFLPVDIY 157 Query: 156 VPGCPPTAEALIYGILLLQKKI 177 +PGCPP EA I+ + LLQK I Sbjct: 158 IPGCPPRPEAYIHALTLLQKTI 179 >gi|212550775|ref|YP_002309092.1| NADH dehydrogenase I subunit B [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] gi|238065056|sp|B6YR59|NUOB_AZOPC RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|212549013|dbj|BAG83681.1| NADH dehydrogenase I subunit B [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] Length = 191 Score = 154 bits (389), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 66/140 (47%), Positives = 97/140 (69%), Gaps = 1/140 (0%) Query: 40 VTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APRASPRQSDVMIV 98 + ++ L+ W R+ S+ +TF +CC +E M RYD RFG+ R SPRQ+DV+ Sbjct: 28 IAKLNDLINWGRSNSVWPLTFATSCCGIEFMCLGAARYDFARFGWEVTRNSPRQADVVFC 87 Query: 99 AGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPG 158 GT+ +KMA L+R+YDQM EP+YVI++GSCA GG + SY + G D+I+PVD+Y+PG Sbjct: 88 CGTIVHKMAPVLKRLYDQMSEPKYVIALGSCAISGGPFKSSYHTIMGIDKIIPVDVYIPG 147 Query: 159 CPPTAEALIYGILLLQKKIR 178 CPP +A+IYG++ L +KI+ Sbjct: 148 CPPRPDAMIYGMIQLARKIK 167 >gi|154795224|ref|YP_054635.2| NADH dehydrogenase subunit K [Saccharum officinarum] gi|154795225|ref|YP_899411.2| NADH-plastoquinone oxidoreductase subunit K [Sorghum bicolor] gi|154795226|ref|NP_043029.2| NADH dehydrogenase subunit K [Zea mays] gi|154795254|ref|YP_024383.2| NADH dehydrogenase subunit K [Saccharum hybrid cultivar SP-80-3280] gi|242057527|ref|XP_002457909.1| hypothetical protein SORBIDRAFT_03g020200 [Sorghum bicolor] gi|218511709|sp|Q6L395|NDHK_SACHY RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K gi|218511710|sp|Q6ENV9|NDHK_SACOF RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K gi|218527954|sp|A1E9S8|NDHK_SORBI RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K gi|241929884|gb|EES03029.1| hypothetical protein SORBIDRAFT_03g020200 [Sorghum bicolor] Length = 227 Score = 154 bits (389), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 68/149 (45%), Positives = 102/149 (68%), Gaps = 1/149 (0%) Query: 32 EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPR 91 + + + T+ + L W+R SL + +G +CC +E R+D +R+G PR+SPR Sbjct: 11 QTSSNSVISTTPNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPR 70 Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIV 150 Q+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++ Sbjct: 71 QADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLI 130 Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRR 179 PVD+Y+PGCPP EA+I + L+KKI R Sbjct: 131 PVDVYLPGCPPKPEAVIDALTKLRKKIAR 159 >gi|15616775|ref|NP_239987.1| NADH dehydrogenase subunit B [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|219681530|ref|YP_002467915.1| NADH dehydrogenase beta subunit [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|219682086|ref|YP_002468470.1| NADH dehydrogenase beta subunit [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|257471211|ref|ZP_05635210.1| NADH dehydrogenase subunit B [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)] gi|11133957|sp|P57253|NUOB_BUCAI RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|238055274|sp|B8D8V6|NUOB_BUCA5 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|238055275|sp|B8D760|NUOB_BUCAT RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|25299001|pir||A84948 NADH2 dehydrogenase (ubiquinone) (EC 1.6.5.3) chain B [imported] - Buchnera sp. (strain APS) gi|10038838|dbj|BAB12873.1| NADH dehydrogenase I chain B [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|219621819|gb|ACL29975.1| NADH dehydrogenase beta subunit [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|219624373|gb|ACL30528.1| NADH dehydrogenase beta subunit [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|311085897|gb|ADP65979.1| NADH dehydrogenase subunit B [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)] gi|311086470|gb|ADP66551.1| NADH dehydrogenase subunit B [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)] gi|311087051|gb|ADP67131.1| NADH dehydrogenase subunit B [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)] gi|311087610|gb|ADP67689.1| NADH dehydrogenase subunit B [Buchnera aphidicola str. JF98 (Acyrthosiphon pisum)] Length = 224 Score = 154 bits (389), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 78/163 (47%), Positives = 104/163 (63%), Gaps = 2/163 (1%) Query: 18 SLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRY 77 ++E V + G + + +LV W R SL FGL+CC VEM+ A + Sbjct: 21 TIESVSDPLEEYLKKNIFMGKITQLLHKLVNWGRKNSLWPYNFGLSCCYVEMVSAFTSVH 80 Query: 78 DLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY 136 D+ RFG RASPRQ+DVM++AGT KMA ++R+YDQM EP++VISMG+CAN GG Y Sbjct: 81 DVARFGSEVLRASPRQADVMVIAGTPFIKMAPVIQRLYDQMLEPKWVISMGACANSGGMY 140 Query: 137 HYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179 YSVV+G D+ +PVDIY+PGCPP EA + ++LLQK I Sbjct: 141 DI-YSVVQGVDKFLPVDIYIPGCPPRPEAYMQALILLQKLINE 182 >gi|148668050|gb|ABR01434.1| NADH-plastoquinone oxidoreductase subunit K [Dioscorea elephantipes] Length = 247 Score = 154 bits (389), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 69/149 (46%), Positives = 101/149 (67%), Gaps = 1/149 (0%) Query: 32 EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPR 91 + T + T+ + L W+R SL + +G +CC +E R+D +R+G PR+SPR Sbjct: 33 QTTPNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPR 92 Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIV 150 Q+D+++ AGT+T KMA +L R+Y+QM EP+YVI+MG+C GG + SYS VRG D+++ Sbjct: 93 QADLILTAGTVTMKMAPSLVRLYEQMAEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLI 152 Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRR 179 PVD+Y+PGCPP EA+I I L+KKI R Sbjct: 153 PVDVYLPGCPPKPEAVIDAITKLRKKISR 181 >gi|290489728|gb|ADD31248.1| NADH-plastoquinone oxidoreductase subunit K protein [Cornus florida] Length = 252 Score = 154 bits (389), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 69/147 (46%), Positives = 101/147 (68%), Gaps = 1/147 (0%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93 T + T+ + L W+R SL + +G +CC +E R+D +R+G PR+SPRQ+ Sbjct: 40 TPNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 99 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152 D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++PV Sbjct: 100 DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 159 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179 D+Y+PGCPP EA+I I L+KKI + Sbjct: 160 DVYLPGCPPKPEAVIDAITKLRKKISQ 186 >gi|20090355|ref|NP_616430.1| F(420)H(2) dehydrogenase, subunit FpoB [Methanosarcina acetivorans C2A] gi|19915360|gb|AAM04910.1| F(420)H(2) dehydrogenase, subunit FpoB [Methanosarcina acetivorans C2A] Length = 184 Score = 154 bits (389), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 65/138 (47%), Positives = 93/138 (67%) Query: 41 TSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAG 100 T L+ W R SL +MT + CC VEM+ YD +RFG PR SPR +DVMI++G Sbjct: 38 TKAQDLINWGRKNSLWFMTQPMGCCGVEMIATGCAHYDTDRFGIIPRNSPRHADVMIISG 97 Query: 101 TLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCP 160 +T K AL+R+++QMP P++VI+MG C+ GG ++ SYS V+ D + P+D+++PGCP Sbjct: 98 YVTKKYLPALKRLWEQMPAPKWVIAMGDCSISGGPFYESYSTVQNIDELFPIDVFIPGCP 157 Query: 161 PTAEALIYGILLLQKKIR 178 P EALI G + LQ+KI+ Sbjct: 158 PRPEALIQGFVELQEKIK 175 >gi|301061312|ref|ZP_07202094.1| NADH dehydrogenase, C subunit [delta proteobacterium NaphS2] gi|300444631|gb|EFK08614.1| NADH dehydrogenase, C subunit [delta proteobacterium NaphS2] Length = 484 Score = 154 bits (389), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 71/141 (50%), Positives = 102/141 (72%), Gaps = 2/141 (1%) Query: 39 LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMI 97 +++ D ++ WAR S M FGL+CC +E M RYD+ RFG R +PRQ+D++I Sbjct: 11 VISMADDVINWARQYSFWPMFFGLSCCFIEQMVTYTSRYDISRFGAEVLRGTPRQADLLI 70 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 +GT+ K+A + R+Y+QMPEP++V+SMGSC+N GG Y YSVV+G D+I+PVDIY+P Sbjct: 71 TSGTIFKKIAPVVLRLYEQMPEPKWVMSMGSCSNCGGMYDV-YSVVQGIDQILPVDIYIP 129 Query: 158 GCPPTAEALIYGILLLQKKIR 178 GCPP EA++ G+ LLQKK++ Sbjct: 130 GCPPRPEAVLQGLTLLQKKVK 150 >gi|168700846|ref|ZP_02733123.1| NADH-quinone oxidoreductase, B subunit [Gemmata obscuriglobus UQM 2246] Length = 201 Score = 154 bits (389), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 74/147 (50%), Positives = 101/147 (68%), Gaps = 2/147 (1%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APRASPRQSDVM 96 F++ +D L AR SL M F ACC +E+M + RYD+ RFG A R SPRQ DVM Sbjct: 10 FMIAPLDYLANMARKHSLWPMPFATACCGIELMATASSRYDIARFGSEAMRFSPRQCDVM 69 Query: 97 IVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV 156 IVAG + KM ++R++ QMPEP++ ISMG+CA+ GG + +Y+VV+G DR +PVD+YV Sbjct: 70 IVAGRVAMKMVPVMQRIWLQMPEPKWCISMGACASSGGVFD-TYAVVQGIDRFIPVDVYV 128 Query: 157 PGCPPTAEALIYGILLLQKKIRRVGNV 183 PGCPP E LI +L LQ+KI++ G + Sbjct: 129 PGCPPRPEQLIRAVLDLQEKIQKTGTI 155 >gi|116747649|ref|YP_844336.1| NADH-quinone oxidoreductase subunit B [Syntrophobacter fumaroxidans MPOB] gi|116696713|gb|ABK15901.1| NADH-quinone oxidoreductase, B subunit [Syntrophobacter fumaroxidans MPOB] Length = 176 Score = 154 bits (389), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 79/154 (51%), Positives = 105/154 (68%), Gaps = 5/154 (3%) Query: 27 SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP 86 +R++ E F V ++ ++ AR SL MTFGLACCA+EMM A R+DL+RFG Sbjct: 5 NRVAPEEPAIQFAV--LEDILNLARANSLWPMTFGLACCAIEMMAAGASRFDLDRFGAGV 62 Query: 87 -RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS--YSVV 143 R SPRQSD+MIVAGT++ KM A++ ++DQMP P++ I+MG+CA GG + Y Y++V Sbjct: 63 FRPSPRQSDLMIVAGTISKKMGPAVQMLWDQMPNPKWCIAMGNCAISGGPFEYEGQYAIV 122 Query: 144 RGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 G IVPVDI++PGCPP EALI G L L KI Sbjct: 123 PGAHLIVPVDIFIPGCPPRPEALIQGFLALGDKI 156 >gi|239905979|ref|YP_002952718.1| NADH-quinone oxidoreductase chain B/C/D [Desulfovibrio magneticus RS-1] gi|239795843|dbj|BAH74832.1| NADH-quinone oxidoreductase chain B/C/D [Desulfovibrio magneticus RS-1] Length = 793 Score = 154 bits (389), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 74/140 (52%), Positives = 99/140 (70%), Gaps = 2/140 (1%) Query: 39 LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMI 97 L D ++ WAR SL FGL+CC VE A PRYD+ RFG R SPRQ+DV+I Sbjct: 8 LFRPADAVINWARKNSLWPFFFGLSCCFVEEATAWGPRYDIARFGSEVFRGSPRQADVLI 67 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 V+GT+ K+A ++Y+QM +P++VISMGSC+N GG Y YSVV+G D+I+P+D+Y+P Sbjct: 68 VSGTMFKKIAPVALQLYEQMSDPKWVISMGSCSNSGGMYDV-YSVVQGSDQILPIDVYIP 126 Query: 158 GCPPTAEALIYGILLLQKKI 177 GCPP EA+ G++LLQKKI Sbjct: 127 GCPPRPEAVFEGLMLLQKKI 146 >gi|189162275|ref|YP_001936521.1| NADH dehydrogenase subunit K [Fagopyrum esculentum subsp. ancestrale] gi|166065361|gb|ABY79736.1| NADH dehydrogenase subunit K [Fagopyrum esculentum subsp. ancestrale] Length = 285 Score = 154 bits (388), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 70/146 (47%), Positives = 101/146 (69%), Gaps = 1/146 (0%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 IT + T+ + L W+R SL + +G +CC +E R+D +R+G PR+SPRQ Sbjct: 72 ITPNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQ 131 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVP 151 +D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++P Sbjct: 132 ADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIP 191 Query: 152 VDIYVPGCPPTAEALIYGILLLQKKI 177 VD+Y+PGCPP EA+I I L+KKI Sbjct: 192 VDVYLPGCPPKPEAVIDAITKLRKKI 217 >gi|154795252|ref|YP_001294356.2| NADH dehydrogenase subunit K [Dioscorea elephantipes] gi|218527899|sp|A6MML1|NDHK_DIOEL RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K Length = 225 Score = 154 bits (388), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 69/149 (46%), Positives = 101/149 (67%), Gaps = 1/149 (0%) Query: 32 EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPR 91 + T + T+ + L W+R SL + +G +CC +E R+D +R+G PR+SPR Sbjct: 11 QTTPNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPR 70 Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIV 150 Q+D+++ AGT+T KMA +L R+Y+QM EP+YVI+MG+C GG + SYS VRG D+++ Sbjct: 71 QADLILTAGTVTMKMAPSLVRLYEQMAEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLI 130 Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRR 179 PVD+Y+PGCPP EA+I I L+KKI R Sbjct: 131 PVDVYLPGCPPKPEAVIDAITKLRKKISR 159 >gi|229577758|ref|YP_002836094.1| NADH-plastoquinone oxidoreductase subunit K [Megaleranthis saniculifolia] gi|226933886|gb|ACO92019.1| NADH-plastoquinone oxidoreductase subunit K [Megaleranthis saniculifolia] Length = 217 Score = 154 bits (388), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 68/142 (47%), Positives = 100/142 (70%), Gaps = 1/142 (0%) Query: 39 LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIV 98 + T+ + L W+R SL + +G +CC +E R+D +R+G PR+SPRQ+D+++ Sbjct: 20 ISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILT 79 Query: 99 AGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPVDIYVP 157 AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++PVD+Y+P Sbjct: 80 AGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLP 139 Query: 158 GCPPTAEALIYGILLLQKKIRR 179 GCPP EA+I I L+KK+ R Sbjct: 140 GCPPKPEAVIDAITKLRKKVSR 161 >gi|167042391|gb|ABZ07118.1| putative NADH ubiquinone oxidoreductase, 20 Kd subunit [uncultured marine crenarchaeote HF4000_ANIW97P9] Length = 185 Score = 154 bits (388), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 77/135 (57%), Positives = 95/135 (70%), Gaps = 1/135 (0%) Query: 47 VTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR-ASPRQSDVMIVAGTLTNK 105 + W R SL + ACC+VE AS PRYD+ERFG S RQ D+++V GT+T K Sbjct: 48 INWGRLWSLWPVHIETACCSVEFGAASGPRYDVERFGIIEAFGSLRQCDLVVVQGTITRK 107 Query: 106 MASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEA 165 MA LR VYDQMPEP+YVI+MG+CA GG Y SY+V+ G D I+PVD+YVPGCPP E Sbjct: 108 MAPRLRLVYDQMPEPKYVIAMGACAITGGLYFDSYNVLPGIDGILPVDVYVPGCPPRPET 167 Query: 166 LIYGILLLQKKIRRV 180 LI G LLLQ+KI+R+ Sbjct: 168 LIQGCLLLQEKIKRM 182 >gi|122211719|sp|Q32RI3|NDHK_ZYGCR RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K gi|61393680|gb|AAX45822.1| 27 kDa subunit of NADH-ubiquinone oxidoreductase [Zygnema circumcarinatum] Length = 255 Score = 154 bits (388), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 66/144 (45%), Positives = 101/144 (70%), Gaps = 1/144 (0%) Query: 35 HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSD 94 + ++T++ + W R SL + +G +CC +E R+D +R+G PR+SPRQ+D Sbjct: 18 YDSVVLTTLQDVSNWVRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQAD 77 Query: 95 VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPVD 153 ++I AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++PVD Sbjct: 78 LIITAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVD 137 Query: 154 IYVPGCPPTAEALIYGILLLQKKI 177 +Y+PGCPP EA++ I+ L+KK+ Sbjct: 138 VYLPGCPPKPEAIVDAIIKLRKKV 161 >gi|220908787|ref|YP_002484098.1| NADH dehydrogenase subunit B [Cyanothece sp. PCC 7425] gi|238065000|sp|B8HQR6|NDHK1_CYAP4 RecName: Full=NAD(P)H-quinone oxidoreductase subunit K 1; AltName: Full=NAD(P)H dehydrogenase I subunit K 1; AltName: Full=NDH-1 subunit K 1; Short=NDH-K 1 gi|219865398|gb|ACL45737.1| NADH-quinone oxidoreductase, B subunit [Cyanothece sp. PCC 7425] Length = 238 Score = 154 bits (388), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 69/144 (47%), Positives = 101/144 (70%), Gaps = 1/144 (0%) Query: 35 HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSD 94 + ++TS++ + +W R SL + +G ACC +E R+D +RFG PR SPRQ+D Sbjct: 25 QENIILTSLNDVYSWCRLSSLWPLMYGTACCFIEFAAMIGSRFDFDRFGLVPRCSPRQAD 84 Query: 95 VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPVD 153 ++I AGT+T KMA AL ++Y+QMPEP+YVI+MG+C GG + S + VRG D+++PVD Sbjct: 85 LLITAGTITMKMAPALVKLYEQMPEPKYVIAMGACTITGGMFSTDSPTAVRGVDKLIPVD 144 Query: 154 IYVPGCPPTAEALIYGILLLQKKI 177 IY+PGCPP EA++ I+ L+KKI Sbjct: 145 IYLPGCPPRPEAIMDAIVKLRKKI 168 >gi|154795232|ref|YP_636543.2| NADH dehydrogenase subunit K [Zygnema circumcarinatum] Length = 248 Score = 154 bits (388), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 66/144 (45%), Positives = 101/144 (70%), Gaps = 1/144 (0%) Query: 35 HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSD 94 + ++T++ + W R SL + +G +CC +E R+D +R+G PR+SPRQ+D Sbjct: 11 YDSVVLTTLQDVSNWVRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQAD 70 Query: 95 VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPVD 153 ++I AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++PVD Sbjct: 71 LIITAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVD 130 Query: 154 IYVPGCPPTAEALIYGILLLQKKI 177 +Y+PGCPP EA++ I+ L+KK+ Sbjct: 131 VYLPGCPPKPEAIVDAIIKLRKKV 154 >gi|116749375|ref|YP_846062.1| trifunctional NADH dehydrogenase I subunit B/C/D [Syntrophobacter fumaroxidans MPOB] gi|218534237|sp|A0LJM5|NUBCD_SYNFM RecName: Full=NADH-quinone oxidoreductase subunit B/C/D; AltName: Full=NADH dehydrogenase I subunit B/C/D; AltName: Full=NDH-1 subunit B/C/D gi|116698439|gb|ABK17627.1| NADH dehydrogenase I, D subunit [Syntrophobacter fumaroxidans MPOB] Length = 787 Score = 153 bits (387), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 74/140 (52%), Positives = 103/140 (73%), Gaps = 2/140 (1%) Query: 39 LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMI 97 +++ D ++ W+R SL + FGL+CC VE A PRYD+ RFG R SPRQ+D++I Sbjct: 5 FLSAADFVLNWSRKYSLWPLFFGLSCCFVEEATAFTPRYDMARFGAEVLRPSPRQADLLI 64 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 V+GT+ K+A + R+Y+QM EP++VISMGSC+N GG Y YSVV+G D+I+PVD+Y+P Sbjct: 65 VSGTVFKKIAPVVLRLYEQMAEPKWVISMGSCSNCGGMYDV-YSVVQGIDQILPVDVYIP 123 Query: 158 GCPPTAEALIYGILLLQKKI 177 GCPP EA++ G+ LLQKKI Sbjct: 124 GCPPRPEAVLQGLTLLQKKI 143 >gi|68565803|sp|Q85FL6|NDHK_ADICA RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K gi|48476003|gb|AAP29396.2| NADH dehydrogenase subunit K [Adiantum capillus-veneris] Length = 250 Score = 153 bits (387), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 72/165 (43%), Positives = 107/165 (64%), Gaps = 6/165 (3%) Query: 21 KVDADFSRISSEITHKG-----FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMP 75 K + FS S++ +G + S+ W+R SL + +G +CC +E Sbjct: 19 KGEDSFSNSMSKLPLQGGMSDSIFMASISDFSNWSRLSSLWPLLYGTSCCFIEFASLIGS 78 Query: 76 RYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY 135 R+D +R+G PR+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG Sbjct: 79 RFDFDRYGLVPRSSPRQADLIVTAGTITMKMAPSLIRLYEQMPEPKYVIAMGACTITGGM 138 Query: 136 YHY-SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179 + SYS VRG D+++PVDIY+PGCPP EA++ + L+KKI R Sbjct: 139 FSTDSYSTVRGVDKLIPVDIYLPGCPPKPEAIMDAVTKLRKKIAR 183 >gi|161527785|ref|YP_001581611.1| NADH-quinone oxidoreductase subunit B [Nitrosopumilus maritimus SCM1] gi|160339086|gb|ABX12173.1| NADH-quinone oxidoreductase, B subunit [Nitrosopumilus maritimus SCM1] Length = 174 Score = 153 bits (386), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 75/135 (55%), Positives = 95/135 (70%), Gaps = 1/135 (0%) Query: 47 VTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR-ASPRQSDVMIVAGTLTNK 105 + W R SL + ACC+VE AS PRYD+ERFG S RQ D+++V GT+T K Sbjct: 34 INWGRIWSLWPVHIETACCSVEFGAASSPRYDVERFGIIEAFGSLRQCDLVVVQGTITRK 93 Query: 106 MASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEA 165 MA LR VYDQMPEP+YVI+MG+CA GG Y SY+V+ G D ++PVD+YVPGCPP E Sbjct: 94 MAPRLRLVYDQMPEPKYVIAMGACAITGGLYFDSYNVLPGIDGVIPVDVYVPGCPPRPET 153 Query: 166 LIYGILLLQKKIRRV 180 LI G +LLQ+KI+R+ Sbjct: 154 LIQGCILLQEKIKRM 168 >gi|118474832|ref|YP_891363.1| NADH-quinone oxidoreductase chain b [Campylobacter fetus subsp. fetus 82-40] gi|238055277|sp|A0RMD0|NUOB_CAMFF RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|118414058|gb|ABK82478.1| NADH-quinone oxidoreductase chain b [Campylobacter fetus subsp. fetus 82-40] Length = 168 Score = 153 bits (386), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 71/148 (47%), Positives = 100/148 (67%), Gaps = 2/148 (1%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RAS 89 + ++T +D L W R SL M FG ACCA+E M A ++DL RFG R S Sbjct: 4 ENLVQNDVVLTRLDALFNWGRKNSLWPMIFGTACCAIEFMSAVSSKHDLSRFGAEVMRFS 63 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQ+D+MI+AGT++ K A L+ +YDQM EP++V+SMG+CA GG+Y +Y+ ++G D+I Sbjct: 64 PRQADLMIIAGTISFKQAPILKEIYDQMCEPKWVVSMGACACSGGFYD-NYTTLQGIDQI 122 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKI 177 +PVD+Y+ GCPP EA+I IL +Q KI Sbjct: 123 IPVDVYISGCPPRPEAIIDAILAIQDKI 150 >gi|296274177|ref|YP_003656808.1| NADH-quinone oxidoreductase subunit B [Arcobacter nitrofigilis DSM 7299] gi|296098351|gb|ADG94301.1| NADH-quinone oxidoreductase, B subunit [Arcobacter nitrofigilis DSM 7299] Length = 171 Score = 153 bits (386), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 70/139 (50%), Positives = 101/139 (72%), Gaps = 2/139 (1%) Query: 39 LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APRASPRQSDVMI 97 + T +D+ V WAR+ SL M FG ACC +E M + +YD+ RFG R SPRQ+D++I Sbjct: 14 ITTRLDKAVNWARSYSLWPMVFGTACCGIEFMSVAAAKYDISRFGAEVVRFSPRQADLLI 73 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 +AGT+T K A L+++YDQM EP++VISMG+CA+ GG+Y +Y+ ++G D+I+PVD YV Sbjct: 74 IAGTITYKQAPVLKKIYDQMCEPKWVISMGACASSGGFYD-NYTTLQGVDQIIPVDEYVS 132 Query: 158 GCPPTAEALIYGILLLQKK 176 GCPP EA++ I+ +QKK Sbjct: 133 GCPPRPEAVLDAIISIQKK 151 >gi|313183997|ref|YP_004021154.1| NADH-plastoquinone oxidoreductase subunit K [Castanea mollissima] gi|309321524|gb|ADO65064.1| NADH-plastoquinone oxidoreductase subunit K [Castanea mollissima] Length = 255 Score = 153 bits (386), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 67/140 (47%), Positives = 99/140 (70%), Gaps = 1/140 (0%) Query: 41 TSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAG 100 T+ + L W+R SL + +G +CC +E R+D +R+G PR+SPRQ+D+++ AG Sbjct: 47 TTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAG 106 Query: 101 TLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPVDIYVPGC 159 T+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SY+ VRG D+++PVD+Y+PGC Sbjct: 107 TVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYTTVRGVDKLIPVDVYLPGC 166 Query: 160 PPTAEALIYGILLLQKKIRR 179 PP EA+I I L+KK+ R Sbjct: 167 PPKPEAVIDAITKLRKKLSR 186 >gi|290489744|gb|ADD31256.1| NADH-plastoquinone oxidoreductase subunit K protein [Quercus nigra] Length = 230 Score = 153 bits (386), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 67/140 (47%), Positives = 99/140 (70%), Gaps = 1/140 (0%) Query: 41 TSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAG 100 T+ + L W+R SL + +G +CC +E R+D +R+G PR+SPRQ+D+++ AG Sbjct: 22 TTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAG 81 Query: 101 TLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPVDIYVPGC 159 T+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SY+ VRG D+++PVD+Y+PGC Sbjct: 82 TVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYTTVRGVDKLIPVDVYLPGC 141 Query: 160 PPTAEALIYGILLLQKKIRR 179 PP EA+I I L+KK+ R Sbjct: 142 PPKPEAVIDAITKLRKKLSR 161 >gi|218527892|sp|A6MMC6|NDHK_CHLSC RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K Length = 222 Score = 153 bits (386), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 67/142 (47%), Positives = 100/142 (70%), Gaps = 1/142 (0%) Query: 39 LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIV 98 + T+ + L W+R SL + +G +CC +E R+D +R+G PR+SPRQ+D+++ Sbjct: 18 ISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILT 77 Query: 99 AGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPVDIYVP 157 AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++PVD+Y+P Sbjct: 78 AGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLP 137 Query: 158 GCPPTAEALIYGILLLQKKIRR 179 GCPP EA+I I L+K++ R Sbjct: 138 GCPPKPEAVIDAITKLRKRVSR 159 >gi|183220687|ref|YP_001838683.1| NADH dehydrogenase subunit B [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189910788|ref|YP_001962343.1| NADH dehydrogenase subunit B [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|238065164|sp|B0SFT5|NUOB_LEPBA RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|238065165|sp|B0SP83|NUOB_LEPBP RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|167775464|gb|ABZ93765.1| NADH dehydrogenase (ubiquinone), B chain [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167779109|gb|ABZ97407.1| NADH-quinone oxidoreductase chain B [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 186 Score = 152 bits (385), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 70/145 (48%), Positives = 103/145 (71%), Gaps = 2/145 (1%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQSDVM 96 F V ++D +V W ++ SL F ACC +E M + YD+ RFG P SPRQ+D++ Sbjct: 18 FQVATLDNVVQWGQSFSLWPYPFATACCGIEYMSTACADYDIARFGAERPSFSPRQADMI 77 Query: 97 IVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV 156 +V GT+T KMA LR++YDQ+ EP++VIS+G+CA+ GG +H +Y V++G DRI+PVD+YV Sbjct: 78 LVLGTITYKMAPVLRQIYDQLAEPKFVISVGACASSGGMFH-TYGVLQGVDRILPVDVYV 136 Query: 157 PGCPPTAEALIYGILLLQKKIRRVG 181 PGCPP EA++ ++ LQKK++ G Sbjct: 137 PGCPPRPEAILDALVKLQKKVQSQG 161 >gi|239907416|ref|YP_002954157.1| NADH-quinone oxidoreductase chain B [Desulfovibrio magneticus RS-1] gi|239797282|dbj|BAH76271.1| NADH-quinone oxidoreductase chain B [Desulfovibrio magneticus RS-1] Length = 176 Score = 152 bits (385), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 73/139 (52%), Positives = 102/139 (73%), Gaps = 3/139 (2%) Query: 42 SVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAG 100 +V +LV R S+ MTFGLACCA+EMM M R+D+ R+G R SPRQSD+MIVAG Sbjct: 24 AVQKLVDVCRAMSIWPMTFGLACCAIEMMAVGMARFDIARYGAEVFRPSPRQSDLMIVAG 83 Query: 101 TLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS--YSVVRGCDRIVPVDIYVPG 158 T+ KMA A+ R+Y+QMP PRYV+++G+CA GG ++ Y+V++G D ++PVD+YVPG Sbjct: 84 TVNKKMAPAVVRLYEQMPAPRYVMALGNCAISGGPFNIENQYNVIQGVDTLIPVDVYVPG 143 Query: 159 CPPTAEALIYGILLLQKKI 177 CPP EAL+ G+ +Q+K+ Sbjct: 144 CPPRPEALLEGLFAIQEKM 162 >gi|317153001|ref|YP_004121049.1| NADH-quinone oxidoreductase subunit B [Desulfovibrio aespoeensis Aspo-2] gi|316943252|gb|ADU62303.1| NADH-quinone oxidoreductase, B subunit [Desulfovibrio aespoeensis Aspo-2] Length = 181 Score = 152 bits (385), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 74/130 (56%), Positives = 96/130 (73%), Gaps = 3/130 (2%) Query: 51 RTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASA 109 R+ SL MTFGLACCA+EMM M R+D+ RFG R SPRQSDVMIVAGT+T KMA A Sbjct: 38 RSMSLWPMTFGLACCAIEMMATGMARFDMARFGAEVFRPSPRQSDVMIVAGTVTKKMAPA 97 Query: 110 LRRVYDQMPEPRYVISMGSCANGGGYYHY--SYSVVRGCDRIVPVDIYVPGCPPTAEALI 167 + R+Y+QMP P++VI+MG+CA GG + +Y+V+ G D ++PVD+YVPGCPP E L+ Sbjct: 98 VVRLYEQMPGPKWVIAMGNCAISGGPFKIKDNYNVIEGVDTLIPVDVYVPGCPPRPEGLL 157 Query: 168 YGILLLQKKI 177 G LQ++I Sbjct: 158 EGFFQLQRQI 167 >gi|167044398|gb|ABZ09075.1| putative NADH ubiquinone oxidoreductase, 20 Kd subunit [uncultured marine crenarchaeote HF4000_APKG6D3] Length = 185 Score = 152 bits (385), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 76/135 (56%), Positives = 95/135 (70%), Gaps = 1/135 (0%) Query: 47 VTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR-ASPRQSDVMIVAGTLTNK 105 + W R SL + ACC+VE AS PRYD+ERFG S RQ D+++V GT+T K Sbjct: 48 INWGRLWSLWPVHIETACCSVEFGAASGPRYDVERFGIIEAFGSLRQCDLVVVQGTITRK 107 Query: 106 MASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEA 165 MA LR VYDQMPEP+YVI+MG+CA GG Y SY+V+ G D I+PVD+YVPGCPP E Sbjct: 108 MAPRLRLVYDQMPEPKYVIAMGACAITGGLYFDSYNVLPGIDGILPVDVYVPGCPPRPET 167 Query: 166 LIYGILLLQKKIRRV 180 LI G +LLQ+KI+R+ Sbjct: 168 LIQGCILLQEKIKRM 182 >gi|329765844|ref|ZP_08257410.1| NADH-quinone oxidoreductase, B subunit [Candidatus Nitrosoarchaeum limnia SFB1] gi|329137687|gb|EGG41957.1| NADH-quinone oxidoreductase, B subunit [Candidatus Nitrosoarchaeum limnia SFB1] Length = 174 Score = 152 bits (385), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 75/135 (55%), Positives = 95/135 (70%), Gaps = 1/135 (0%) Query: 47 VTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR-ASPRQSDVMIVAGTLTNK 105 + W R SL + ACC+VE AS PRYD+ERFG S RQ D+++V GT+T K Sbjct: 34 INWGRIWSLWPVHIETACCSVEFGAASSPRYDVERFGIIEAFGSLRQCDLIVVQGTITRK 93 Query: 106 MASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEA 165 MA LR VYDQMPEP+YVI+MG+CA GG Y SY+V+ G D ++PVD+YVPGCPP E Sbjct: 94 MAPRLRLVYDQMPEPKYVIAMGACAITGGLYFDSYNVLPGIDGVLPVDVYVPGCPPRPET 153 Query: 166 LIYGILLLQKKIRRV 180 LI G +LLQ+KI+R+ Sbjct: 154 LIQGCMLLQEKIKRM 168 >gi|154795228|ref|NP_848064.3| NADH dehydrogenase subunit K [Adiantum capillus-veneris] Length = 223 Score = 152 bits (385), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 67/142 (47%), Positives = 98/142 (69%), Gaps = 1/142 (0%) Query: 39 LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIV 98 + S+ W+R SL + +G +CC +E R+D +R+G PR+SPRQ+D+++ Sbjct: 15 FMASISDFSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLIVT 74 Query: 99 AGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPVDIYVP 157 AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++PVDIY+P Sbjct: 75 AGTITMKMAPSLIRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDIYLP 134 Query: 158 GCPPTAEALIYGILLLQKKIRR 179 GCPP EA++ + L+KKI R Sbjct: 135 GCPPKPEAIMDAVTKLRKKIAR 156 >gi|91975807|ref|YP_568466.1| NADH-quinone oxidoreductase, B subunit [Rhodopseudomonas palustris BisB5] gi|123735640|sp|Q13BH4|NUOB1_RHOPS RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName: Full=NADH dehydrogenase I subunit B 1; AltName: Full=NDH-1 subunit B 1 gi|91682263|gb|ABE38565.1| NADH-quinone oxidoreductase, B subunit [Rhodopseudomonas palustris BisB5] Length = 208 Score = 152 bits (384), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 73/148 (49%), Positives = 103/148 (69%), Gaps = 2/148 (1%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RAS 89 E + L T+++ L W+R SL FGL+CC VE + P YD RFG RAS Sbjct: 18 EEHMARSNLFTTLEDLTAWSRKHSLWPFNFGLSCCYVEQVTVLTPVYDQARFGAEVIRAS 77 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQ+D+++V+GT+ +KMA+ L R+Y+QM PR+VISMG+CAN GG Y YSVV+G DR Sbjct: 78 PRQADLLVVSGTVFHKMAAPLLRLYEQMRAPRWVISMGACANSGGMYDI-YSVVQGVDRF 136 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKI 177 +PVD+Y+PGCPP EA++ +++LQ++I Sbjct: 137 IPVDVYIPGCPPRPEAMLDALIMLQQQI 164 >gi|304312241|ref|YP_003811839.1| NADH dehydrogenase I, chain B [gamma proteobacterium HdN1] gi|301797974|emb|CBL46196.1| NADH dehydrogenase I, chain B [gamma proteobacterium HdN1] Length = 222 Score = 152 bits (384), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 70/148 (47%), Positives = 105/148 (70%), Gaps = 2/148 (1%) Query: 32 EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASP 90 E + ++ ++++V+W+++ SL FGL+CC VEM ++DL RFG R SP Sbjct: 32 EALRQNVVMGKLEEMVSWSQSNSLWPFNFGLSCCYVEMATTFTSQFDLARFGAEVIRGSP 91 Query: 91 RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150 RQ+D+++++GT+ KMA L R+Y+Q+ EPR+VISMGSCAN GG Y YSVV+G D+ + Sbjct: 92 RQADLIVISGTVFRKMAPVLERLYEQLIEPRWVISMGSCANSGGMYDI-YSVVQGVDKFL 150 Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIR 178 PVD+YV GCPP +AL+ G++LLQ +I+ Sbjct: 151 PVDVYVQGCPPRPDALLEGLILLQNQIK 178 >gi|290489708|gb|ADD31238.1| NADH-plastoquinone oxidoreductase subunit K protein [Dillenia indica] Length = 251 Score = 152 bits (384), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 68/140 (48%), Positives = 98/140 (70%), Gaps = 1/140 (0%) Query: 41 TSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAG 100 T+ + L W+R SL + +G +CC +E R+D +R+G PR+SPRQ+D+++ AG Sbjct: 46 TTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAG 105 Query: 101 TLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPVDIYVPGC 159 T+T KMA +L R+Y+QM EP+YVI+MG+C GG + SYS VRG D+++PVD+Y+PGC Sbjct: 106 TVTMKMAPSLVRLYEQMAEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGC 165 Query: 160 PPTAEALIYGILLLQKKIRR 179 PP EA+I I L+KKI R Sbjct: 166 PPKPEAVIDAITKLRKKISR 185 >gi|149390272|ref|YP_001294102.1| NADH-plastoquinone oxidoreductase subunit K [Chloranthus spicatus] gi|146744192|gb|ABQ43264.1| NADH-plastoquinone oxidoreductase subunit K [Chloranthus spicatus] Length = 275 Score = 152 bits (384), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 67/142 (47%), Positives = 100/142 (70%), Gaps = 1/142 (0%) Query: 39 LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIV 98 + T+ + L W+R SL + +G +CC +E R+D +R+G PR+SPRQ+D+++ Sbjct: 71 ISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILT 130 Query: 99 AGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPVDIYVP 157 AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++PVD+Y+P Sbjct: 131 AGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLP 190 Query: 158 GCPPTAEALIYGILLLQKKIRR 179 GCPP EA+I I L+K++ R Sbjct: 191 GCPPKPEAVIDAITKLRKRVSR 212 >gi|257453968|ref|ZP_05619244.1| NADH-quinone oxidoreductase subunit b [Enhydrobacter aerosaccus SK60] gi|257448633|gb|EEV23600.1| NADH-quinone oxidoreductase subunit b [Enhydrobacter aerosaccus SK60] Length = 220 Score = 152 bits (384), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 83/175 (47%), Positives = 108/175 (61%), Gaps = 14/175 (8%) Query: 18 SLEKVDADFSR--------ISSEITHKGFLVTSVDQLV----TWARTGSLMWMTFGLACC 65 +L K + D R I E +K ++T ++ L W R SL FG +CC Sbjct: 4 TLTKANPDADRFPDQTRQIIDEEEVNKNVVMTRLEDLTHSLANWGRKHSLWPFNFGTSCC 63 Query: 66 AVEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 VE +DL RFG RASPRQ+DVMIVAGT KMA ++R+Y+QM EP++VI Sbjct: 64 YVEYATTLTGVHDLSRFGAEVIRASPRQADVMIVAGTCFMKMAPVIQRLYEQMLEPKWVI 123 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179 SMG+CAN GG Y YSVV+G D+I+PVD+Y+PGCPP EALI I+LLQ+ I + Sbjct: 124 SMGACANSGGMYDV-YSVVQGVDKIIPVDVYIPGCPPRPEALIQAIMLLQESITK 177 >gi|148653495|ref|YP_001280588.1| NADH dehydrogenase subunit B [Psychrobacter sp. PRwf-1] gi|238065199|sp|A5WG47|NUOB_PSYWF RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|148572579|gb|ABQ94638.1| NADH-quinone oxidoreductase, B subunit [Psychrobacter sp. PRwf-1] Length = 222 Score = 152 bits (384), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 80/155 (51%), Positives = 100/155 (64%), Gaps = 5/155 (3%) Query: 29 ISSEITHKGFLVTSVDQL---VTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA 85 I E+ F+ D + W R SL FG +CC VE +DL RFG Sbjct: 27 IEDEVNRNVFMGKLEDMVHASANWGRKNSLWPFNFGTSCCYVEYATTLTAVHDLSRFGAE 86 Query: 86 P-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR 144 RASPRQ+DVMIVAGT KMA ++R+Y+QM EP++VISMGSCAN GG Y YSVV+ Sbjct: 87 VIRASPRQADVMIVAGTCFVKMAPVIQRLYEQMLEPKWVISMGSCANSGGMYDI-YSVVQ 145 Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179 G D+I+PVD+YVPGCPP EALI G++LLQ+ I + Sbjct: 146 GVDKIIPVDVYVPGCPPRPEALIQGLMLLQESITK 180 >gi|261416512|ref|YP_003250195.1| NADH-quinone oxidoreductase, B subunit [Fibrobacter succinogenes subsp. succinogenes S85] gi|261372968|gb|ACX75713.1| NADH-quinone oxidoreductase, B subunit [Fibrobacter succinogenes subsp. succinogenes S85] gi|302327904|gb|ADL27105.1| NADH-quinone oxidoreductase, B subunit [Fibrobacter succinogenes subsp. succinogenes S85] Length = 211 Score = 152 bits (384), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 72/151 (47%), Positives = 99/151 (65%), Gaps = 2/151 (1%) Query: 29 ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PR 87 + +E + +S+D LV W R+ SL +G ACCA+E M + RYDL R G R Sbjct: 1 MGNEAEKPNIITSSLDFLVNWGRSNSLWPFPYGTACCAIEFMSTEVGRYDLSRIGSEYVR 60 Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCD 147 +PRQSDV++VAGT+T K A L+R+Y+QM EPR+VI+MG+CA+ GG+Y Y V G D Sbjct: 61 FTPRQSDVLLVAGTITYKQAPILKRIYEQMAEPRWVIAMGACASSGGFYD-CYCTVPGID 119 Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 I+PVD+Y+ GCPP EA + LQKK++ Sbjct: 120 HIIPVDVYIGGCPPRPEAFFDAMFDLQKKVK 150 >gi|133712065|gb|ABO36708.1| photosystem II G protein [Populus trichocarpa] Length = 237 Score = 152 bits (384), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 68/142 (47%), Positives = 99/142 (69%), Gaps = 1/142 (0%) Query: 39 LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIV 98 + T+ + L W+R SL + +G +CC +E R+D +R+G PR+SPRQ+D+++ Sbjct: 30 ISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILT 89 Query: 99 AGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPVDIYVP 157 AGT+T KMA +L R+Y+QMPE +YVI+MG+C GG + SYS VRG D+++PVD+Y+P Sbjct: 90 AGTVTMKMAPSLVRLYEQMPEQKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLP 149 Query: 158 GCPPTAEALIYGILLLQKKIRR 179 GCPP EA+I I L+KKI R Sbjct: 150 GCPPKPEAIIDAITKLRKKISR 171 >gi|268591136|ref|ZP_06125357.1| NADH dehydrogenase I subunit B [Providencia rettgeri DSM 1131] gi|291313438|gb|EFE53891.1| NADH dehydrogenase I subunit B [Providencia rettgeri DSM 1131] Length = 224 Score = 152 bits (383), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 75/142 (52%), Positives = 98/142 (69%), Gaps = 2/142 (1%) Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95 G L ++ +V W R SL FGL+CC VEM+ + +D+ RFG RASPRQ+D Sbjct: 40 GKLSHALHDVVNWGRKNSLWPYNFGLSCCYVEMVTSFTAVHDVARFGAEVLRASPRQADF 99 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155 M+VAGT KMA ++R+YDQM EP++VISMGSCAN GG Y YSVV+G D+ +PVD+Y Sbjct: 100 MVVAGTCFTKMAPVIQRLYDQMLEPKWVISMGSCANSGGMYDI-YSVVQGVDKFIPVDVY 158 Query: 156 VPGCPPTAEALIYGILLLQKKI 177 +PGCPP EA + +LLLQ+ I Sbjct: 159 IPGCPPRPEAYMQALLLLQESI 180 >gi|183599635|ref|ZP_02961128.1| hypothetical protein PROSTU_03122 [Providencia stuartii ATCC 25827] gi|188021887|gb|EDU59927.1| hypothetical protein PROSTU_03122 [Providencia stuartii ATCC 25827] Length = 224 Score = 152 bits (383), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 75/142 (52%), Positives = 98/142 (69%), Gaps = 2/142 (1%) Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95 G L ++ +V W R SL FGL+CC VEM+ + +D+ RFG RASPRQ+D Sbjct: 40 GKLSHALHDVVNWGRKNSLWPYNFGLSCCYVEMVTSFTAVHDVARFGAEVLRASPRQADF 99 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155 M+VAGT KMA ++R+YDQM EP++VISMGSCAN GG Y YSVV+G D+ +PVD+Y Sbjct: 100 MVVAGTCFTKMAPVIQRLYDQMLEPKWVISMGSCANSGGMYDI-YSVVQGVDKFIPVDVY 158 Query: 156 VPGCPPTAEALIYGILLLQKKI 177 +PGCPP EA + +LLLQ+ I Sbjct: 159 IPGCPPRPEAYMQALLLLQESI 180 >gi|86609773|ref|YP_478535.1| NADH dehydrogenase subunit B [Synechococcus sp. JA-2-3B'a(2-13)] gi|123501307|sp|Q2JJA9|NDHK_SYNJB RecName: Full=NAD(P)H-quinone oxidoreductase subunit K; AltName: Full=NAD(P)H dehydrogenase I subunit K; AltName: Full=NDH-1 subunit K; Short=NDH-K gi|86558315|gb|ABD03272.1| NADH-ubiquinone/plastoquinone oxidoreductase, K subunit [Synechococcus sp. JA-2-3B'a(2-13)] Length = 244 Score = 152 bits (383), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 72/162 (44%), Positives = 106/162 (65%), Gaps = 4/162 (2%) Query: 20 EKVDADFSRISSEIT---HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPR 76 EK F + ++T ++T+V+ L WA+ SL + +G ACC +E R Sbjct: 4 EKSQVLFPGAAPQVTTDLSNNVVLTTVNDLYNWAKMSSLWPLLYGTACCFIEFAAMLGSR 63 Query: 77 YDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY 136 +D +RFG PR+SPR +D++I AGT+T KMA AL ++Y QM EP+YVI+MG+C GG + Sbjct: 64 FDFDRFGLLPRSSPRTADLIITAGTVTMKMAPALVKLYQQMAEPKYVIAMGACTISGGMF 123 Query: 137 HY-SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 SY+ VRG D+++PVD+Y+PGCPP EA++ I+ L+KKI Sbjct: 124 SSDSYTAVRGVDKLIPVDVYIPGCPPRPEAIMDAIVKLRKKI 165 >gi|212712277|ref|ZP_03320405.1| hypothetical protein PROVALCAL_03363 [Providencia alcalifaciens DSM 30120] gi|212685023|gb|EEB44551.1| hypothetical protein PROVALCAL_03363 [Providencia alcalifaciens DSM 30120] Length = 224 Score = 152 bits (383), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 75/144 (52%), Positives = 99/144 (68%), Gaps = 2/144 (1%) Query: 35 HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQS 93 + G L ++ +V W R SL FGL+CC VEM+ + +D+ RFG RASPRQ+ Sbjct: 38 YMGKLSHALHDVVNWGRKNSLWPYNFGLSCCYVEMVTSFTAVHDVARFGAEVLRASPRQA 97 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD 153 D M+VAGT KMA ++R+YDQM EP++VISMGSCAN GG Y YSVV+G D+ +PVD Sbjct: 98 DFMVVAGTCFTKMAPVIQRLYDQMLEPKWVISMGSCANSGGMYDI-YSVVQGVDKFIPVD 156 Query: 154 IYVPGCPPTAEALIYGILLLQKKI 177 +Y+PGCPP EA + +LLLQ+ I Sbjct: 157 VYIPGCPPRPEAYMQALLLLQESI 180 >gi|225847872|ref|YP_002728035.1| NADH dehydrogenase subunit B [Sulfurihydrogenibium azorense Az-Fu1] gi|225643594|gb|ACN98644.1| NADH-quinone oxidoreductase, b subunit [Sulfurihydrogenibium azorense Az-Fu1] Length = 172 Score = 152 bits (383), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 73/140 (52%), Positives = 110/140 (78%), Gaps = 1/140 (0%) Query: 35 HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSD 94 + G ++T+V+++++W R SL ++ GLACCA+EMM + R+D +R G R SPRQSD Sbjct: 6 NSGIILTTVEEVLSWGRRNSLWPVSIGLACCAIEMMHTAASRFDTDRLGIIFRGSPRQSD 65 Query: 95 VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154 V+IVAGT+ NK+A L+ +Y+QMP+P++VISMG C++GGG + +YS ++G DRI+PVD+ Sbjct: 66 VLIVAGTVVNKVAPMLKLIYEQMPDPKWVISMGGCSSGGGPFP-TYSTLQGVDRIIPVDV 124 Query: 155 YVPGCPPTAEALIYGILLLQ 174 Y+PGCPPT +AL++GI+ LQ Sbjct: 125 YIPGCPPTPQALLWGIMELQ 144 >gi|261346156|ref|ZP_05973800.1| NADH dehydrogenase I subunit B [Providencia rustigianii DSM 4541] gi|282565809|gb|EFB71344.1| NADH dehydrogenase I subunit B [Providencia rustigianii DSM 4541] Length = 224 Score = 152 bits (383), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 75/144 (52%), Positives = 99/144 (68%), Gaps = 2/144 (1%) Query: 35 HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQS 93 + G L ++ +V W R SL FGL+CC VEM+ + +D+ RFG RASPRQ+ Sbjct: 38 YMGKLSHALHDVVNWGRKNSLWPYNFGLSCCYVEMVTSFTSVHDVARFGAEVLRASPRQA 97 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD 153 D M+VAGT KMA ++R+YDQM EP++VISMGSCAN GG Y YSVV+G D+ +PVD Sbjct: 98 DFMVVAGTCFTKMAPVIQRLYDQMLEPKWVISMGSCANSGGMYDI-YSVVQGVDKFIPVD 156 Query: 154 IYVPGCPPTAEALIYGILLLQKKI 177 +Y+PGCPP EA + +LLLQ+ I Sbjct: 157 VYIPGCPPRPEAYMQALLLLQESI 180 >gi|317492622|ref|ZP_07951049.1| NADH-quinone oxidoreductase [Enterobacteriaceae bacterium 9_2_54FAA] gi|316919372|gb|EFV40704.1| NADH-quinone oxidoreductase [Enterobacteriaceae bacterium 9_2_54FAA] Length = 224 Score = 152 bits (383), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 74/142 (52%), Positives = 98/142 (69%), Gaps = 2/142 (1%) Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95 G L ++ +V W R SL FGL+CC VEM+ + +D+ RFG RASPRQ+D Sbjct: 40 GKLENALHDMVNWGRKNSLWPYNFGLSCCYVEMVTSFTAVHDVARFGAEVLRASPRQADF 99 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155 M+VAGT KMA ++R+YDQM EP++VISMGSCAN GG Y YSVV+G D+ +PVD+Y Sbjct: 100 MVVAGTCFTKMAPVIQRLYDQMLEPKWVISMGSCANSGGMYDI-YSVVQGVDKFIPVDVY 158 Query: 156 VPGCPPTAEALIYGILLLQKKI 177 +PGCPP EA + ++LLQ+ I Sbjct: 159 IPGCPPRPEAYMQALMLLQESI 180 >gi|301058551|ref|ZP_07199556.1| NADH dehydrogenase I subunit B [delta proteobacterium NaphS2] gi|300447283|gb|EFK11043.1| NADH dehydrogenase I subunit B [delta proteobacterium NaphS2] Length = 210 Score = 152 bits (383), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 72/140 (51%), Positives = 101/140 (72%), Gaps = 2/140 (1%) Query: 39 LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APRASPRQSDVMI 97 ++T + ++ W+R SL FGL+CC VEMM A RYD+ RFG RASPR++D++I Sbjct: 28 ILTRLQDMLAWSRKHSLWPFGFGLSCCFVEMMTAITSRYDISRFGAEVVRASPREADMII 87 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 +AGT+ KM ++R+Y+QM PR+VISMGSCAN GG + YSVV+G D+ +PVD+YVP Sbjct: 88 IAGTMFVKMVPVVKRLYEQMMAPRWVISMGSCANSGGMFDI-YSVVQGVDQFLPVDVYVP 146 Query: 158 GCPPTAEALIYGILLLQKKI 177 GCPP+ A + G+ LLQ+K+ Sbjct: 147 GCPPSPMAFMEGLTLLQEKV 166 >gi|110227083|ref|YP_665562.1| NADH dehydrogenase subunit K [Populus alba] gi|122243414|sp|Q14FF3|NDHK_POPAL RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K gi|109945521|dbj|BAE97209.1| NADH dehydrogenase subunit K [Populus alba] Length = 225 Score = 151 bits (382), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 68/142 (47%), Positives = 99/142 (69%), Gaps = 1/142 (0%) Query: 39 LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIV 98 + T+ + L W+R SL + +G +CC +E R+D +R+G PR+SPRQ+D+++ Sbjct: 18 ISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILT 77 Query: 99 AGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPVDIYVP 157 AGT+T KMA +L R+Y+QMPE +YVI+MG+C GG + SYS VRG D+++PVD+Y+P Sbjct: 78 AGTVTMKMAPSLVRLYEQMPEQKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLP 137 Query: 158 GCPPTAEALIYGILLLQKKIRR 179 GCPP EA+I I L+KKI R Sbjct: 138 GCPPKPEAIIDAITKLRKKISR 159 >gi|86606638|ref|YP_475401.1| NADH dehydrogenase subunit B [Synechococcus sp. JA-3-3Ab] gi|123505801|sp|Q2JT69|NDHK_SYNJA RecName: Full=NAD(P)H-quinone oxidoreductase subunit K; AltName: Full=NAD(P)H dehydrogenase I subunit K; AltName: Full=NDH-1 subunit K; Short=NDH-K gi|86555180|gb|ABD00138.1| NADH-ubiquinone/plastoquinone oxidoreductase, K subunit [Synechococcus sp. JA-3-3Ab] Length = 244 Score = 151 bits (382), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 69/155 (44%), Positives = 108/155 (69%), Gaps = 2/155 (1%) Query: 24 ADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFG 83 A ++++++++ ++T+V+ L WA+ SL + +G ACC +E R+D +RFG Sbjct: 12 ASAPQVTTDLSN-NVVLTTVNDLYNWAKMSSLWPLLYGTACCFIEFAAMLGSRFDFDRFG 70 Query: 84 FAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSV 142 PR+SPR +D++I AGT+T KMA AL ++Y QM EP+YVI+MG+C GG + SY+ Sbjct: 71 LLPRSSPRTADLIITAGTVTMKMAPALVKLYQQMAEPKYVIAMGACTISGGMFSSDSYTA 130 Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 VRG D+++PVD+Y+PGCPP EA++ I+ L+KKI Sbjct: 131 VRGVDKLIPVDVYIPGCPPRPEAIMDAIVKLRKKI 165 >gi|253989001|ref|YP_003040357.1| NADH dehydrogenase subunit B [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253780451|emb|CAQ83613.1| nadh dehydrogenase i chain b (nadh-ubiquinone oxidoreductase chain 2 (nuo2) [Photorhabdus asymbiotica] Length = 224 Score = 151 bits (382), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 75/142 (52%), Positives = 97/142 (68%), Gaps = 2/142 (1%) Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95 G L ++ LV W R SL FGL+CC VEM + +D+ RFG RASPRQ+D Sbjct: 40 GKLEHALHDLVNWGRKNSLWPYNFGLSCCYVEMATSFTAVHDVARFGAEVLRASPRQADF 99 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155 M+VAGT KMA ++R+YDQM EP++VISMG+CAN GG Y YSVV+G D+ +PVD+Y Sbjct: 100 MVVAGTCFTKMAPVIQRLYDQMLEPKWVISMGACANSGGMYDI-YSVVQGVDKFIPVDVY 158 Query: 156 VPGCPPTAEALIYGILLLQKKI 177 +PGCPP EA + +LLLQ+ I Sbjct: 159 IPGCPPRPEAYMQALLLLQESI 180 >gi|283852201|ref|ZP_06369474.1| NADH-quinone oxidoreductase, B subunit [Desulfovibrio sp. FW1012B] gi|283572427|gb|EFC20414.1| NADH-quinone oxidoreductase, B subunit [Desulfovibrio sp. FW1012B] Length = 176 Score = 151 bits (382), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 73/139 (52%), Positives = 102/139 (73%), Gaps = 3/139 (2%) Query: 42 SVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAG 100 +V +LV R S+ MTFGLACCA+EMM M R+D+ R+G R SPRQSD+MIVAG Sbjct: 24 AVQKLVDVCRAMSIWPMTFGLACCAIEMMAVGMARFDIARYGAEVFRPSPRQSDLMIVAG 83 Query: 101 TLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS--YSVVRGCDRIVPVDIYVPG 158 T+ K+A A+ R+++QMP PRYV+++G+CA GG ++ Y+VV+G D ++PVD+YVPG Sbjct: 84 TVNKKIAPAVVRLFEQMPAPRYVMALGNCAISGGPFNIEGQYNVVQGVDTLIPVDVYVPG 143 Query: 159 CPPTAEALIYGILLLQKKI 177 CPP EAL+ G+ +Q+KI Sbjct: 144 CPPRPEALLEGLFAIQQKI 162 >gi|154795218|ref|YP_001109505.2| NADH dehydrogenase subunit K [Populus trichocarpa] gi|224173986|ref|XP_002339836.1| predicted protein [Populus trichocarpa] gi|218527945|sp|A4GYR4|NDHK_POPTR RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K gi|222832334|gb|EEE70811.1| predicted protein [Populus trichocarpa] Length = 225 Score = 151 bits (382), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 68/142 (47%), Positives = 99/142 (69%), Gaps = 1/142 (0%) Query: 39 LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIV 98 + T+ + L W+R SL + +G +CC +E R+D +R+G PR+SPRQ+D+++ Sbjct: 18 ISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILT 77 Query: 99 AGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPVDIYVP 157 AGT+T KMA +L R+Y+QMPE +YVI+MG+C GG + SYS VRG D+++PVD+Y+P Sbjct: 78 AGTVTMKMAPSLVRLYEQMPEQKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLP 137 Query: 158 GCPPTAEALIYGILLLQKKIRR 179 GCPP EA+I I L+KKI R Sbjct: 138 GCPPKPEAIIDAITKLRKKISR 159 >gi|15802834|ref|NP_288861.1| NADH dehydrogenase subunit B [Escherichia coli O157:H7 EDL933] gi|25298992|pir||D85869 NADH dehydrogenase I chain B [imported] - Escherichia coli (strain O157:H7, substrain EDL933) gi|12516640|gb|AAG57416.1|AE005461_1 NADH dehydrogenase I chain B [Escherichia coli O157:H7 str. EDL933] Length = 220 Score = 151 bits (382), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 74/160 (46%), Positives = 107/160 (66%), Gaps = 3/160 (1%) Query: 19 LEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78 L+K + + E+ +K + ++ +V W R S+ FGL+CC VEM+ + +D Sbjct: 19 LQKQEIVTDPLEQEV-NKNVFMGKLNDMVNWGRKNSIWPYNFGLSCCYVEMVTSFTAVHD 77 Query: 79 LERFG-FAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137 + RFG RASPRQ+D+M+VAGT KMA ++R+YDQM EP++VISMG+CAN GG Y Sbjct: 78 VARFGAXVLRASPRQADLMVVAGTCFTKMAPVIQRLYDQMLEPKWVISMGACANSGGMYD 137 Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 YSVV+G D+ +PVD+Y+PGCPP EA + ++LLQ+ I Sbjct: 138 I-YSVVQGVDKFIPVDVYIPGCPPRPEAYMQALMLLQESI 176 >gi|82777695|ref|YP_404044.1| NADH dehydrogenase subunit B [Shigella dysenteriae Sd197] gi|309785009|ref|ZP_07679642.1| NADH-quinone oxidoreductase, B subunit [Shigella dysenteriae 1617] gi|123562059|sp|Q32DQ2|NUOB_SHIDS RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|81241843|gb|ABB62553.1| NADH dehydrogenase I chain B [Shigella dysenteriae Sd197] gi|308927379|gb|EFP72853.1| NADH-quinone oxidoreductase, B subunit [Shigella dysenteriae 1617] Length = 220 Score = 151 bits (381), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 74/162 (45%), Positives = 108/162 (66%), Gaps = 3/162 (1%) Query: 19 LEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78 L+K + + E+ +K + ++ +V W R S+ FGL+CC VEM+ + +D Sbjct: 19 LQKQEIVTDPLEQEV-NKNVFMGKLNDMVNWGRKNSIWPYNFGLSCCYVEMVTSFTAVHD 77 Query: 79 LERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137 + RFG RASPRQ+D+M+VAGT KMA ++R+YDQM EP++VISMG+CAN GG Y Sbjct: 78 VARFGAEVLRASPRQADLMVVAGTCFTKMAPVIQRLYDQMLEPKWVISMGACANSGGMYD 137 Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179 YSVV+G D+ +PVD+Y+PGCPP EA + ++LLQ+ I + Sbjct: 138 I-YSVVQGVDKFIPVDVYIPGCPPRPEAYMQALMLLQESIAK 178 >gi|91200364|emb|CAJ73410.1| strongly similar to NADH dehydrogenase I chain B [Candidatus Kuenenia stuttgartiensis] Length = 212 Score = 151 bits (381), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 70/148 (47%), Positives = 100/148 (67%), Gaps = 2/148 (1%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RAS 89 E K ++ ++ L+ W R SL FGL+CC VEM + +YD+ RFG R + Sbjct: 22 EEAVQKTVVLCNLQNLIAWGRKNSLWPFNFGLSCCYVEMATSLTSKYDIARFGAEVIRGT 81 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PR++DVMI AGT+ KMA ++R+Y+QM EPR++ISMGSC+N GG Y YSVV+G D+ Sbjct: 82 PREADVMITAGTIFIKMAPIIKRLYEQMMEPRWIISMGSCSNSGGMYDI-YSVVQGVDKF 140 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKI 177 +PVD+YVPGCPP +A + G+L+L+ + Sbjct: 141 MPVDVYVPGCPPRPDAFMEGLLMLRDSV 168 >gi|320102221|ref|YP_004177812.1| NADH-quinone oxidoreductase subunit B [Isosphaera pallida ATCC 43644] gi|319749503|gb|ADV61263.1| NADH-quinone oxidoreductase, B subunit [Isosphaera pallida ATCC 43644] Length = 247 Score = 151 bits (381), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 72/153 (47%), Positives = 102/153 (66%), Gaps = 2/153 (1%) Query: 32 EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASP 90 E +G ++TS+D +V W R S M F ACC +E+M R+D+ RFG R SP Sbjct: 44 EELPEGVILTSLDSVVNWCRKYSFWPMPFATACCGIELMSVGASRFDIARFGAEVMRFSP 103 Query: 91 RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150 RQ D+MIVAG + KM L+R++ QMPEP++ ISMG+CA+ GG + +Y+VV+G DR + Sbjct: 104 RQCDLMIVAGRVVMKMMPVLQRIWLQMPEPKWCISMGACASTGGIFD-TYAVVQGIDRFI 162 Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 PVD+Y+PGCPP E ++ IL LQ K++R G + Sbjct: 163 PVDVYIPGCPPRPEQILRAILDLQDKVQRGGKL 195 >gi|154795234|ref|YP_209525.2| NADH dehydrogenase subunit K [Huperzia lucidula] Length = 242 Score = 151 bits (381), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 69/152 (45%), Positives = 102/152 (67%), Gaps = 1/152 (0%) Query: 27 SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP 86 S + + T ++T+ + WAR SL + +G +CC +E R D +R+G P Sbjct: 6 SSLLDKTTSNSIVLTTFNDFSNWARLSSLWPLLYGTSCCFIESASLIGSRSDSDRYGLVP 65 Query: 87 RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRG 145 R+SPRQ+D++I AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG Sbjct: 66 RSSPRQADLVITAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRG 125 Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 D+ +PVD+Y+PGCPP EA+I I+ L+K++ Sbjct: 126 VDKPIPVDVYLPGCPPKPEAIIDAIVKLRKRV 157 >gi|75286712|sp|Q5SD03|NDHK_HUPLU RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K gi|50659999|gb|AAT80721.1| NADH-plastoquinone oxidoreductase subunit K [Huperzia lucidula] Length = 263 Score = 151 bits (381), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 69/152 (45%), Positives = 102/152 (67%), Gaps = 1/152 (0%) Query: 27 SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP 86 S + + T ++T+ + WAR SL + +G +CC +E R D +R+G P Sbjct: 27 SSLLDKTTSNSIVLTTFNDFSNWARLSSLWPLLYGTSCCFIESASLIGSRSDSDRYGLVP 86 Query: 87 RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRG 145 R+SPRQ+D++I AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG Sbjct: 87 RSSPRQADLVITAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRG 146 Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 D+ +PVD+Y+PGCPP EA+I I+ L+K++ Sbjct: 147 VDKPIPVDVYLPGCPPKPEAIIDAIVKLRKRV 178 >gi|33519943|ref|NP_878775.1| NADH dehydrogenase subunit B [Candidatus Blochmannia floridanus] gi|81666912|sp|Q7VRV3|NUOB_BLOFL RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|33504289|emb|CAD83181.1| NADH dehydrogenase I chain B [Candidatus Blochmannia floridanus] Length = 223 Score = 151 bits (381), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 76/144 (52%), Positives = 97/144 (67%), Gaps = 2/144 (1%) Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95 G L + + V W R+ SL FGL+CC VEM A +D+ RFG R+SPRQSD Sbjct: 41 GKLKNLLHKAVNWGRSNSLWPYNFGLSCCYVEMTTAFTAVHDVARFGSEVLRSSPRQSDF 100 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155 M++AGT KM ++R+YDQM EP++VISMGSCAN GG Y YSVV+G D+ +PVDIY Sbjct: 101 MVIAGTPFLKMVPIIQRLYDQMLEPKWVISMGSCANSGGMYDI-YSVVQGVDKFLPVDIY 159 Query: 156 VPGCPPTAEALIYGILLLQKKIRR 179 +PGCPP EA I +LLL+K I + Sbjct: 160 IPGCPPRPEAYIQALLLLKKSINK 183 >gi|24213594|ref|NP_711075.1| NADH dehydrogenase (ubiquinone) chain B [Leptospira interrogans serovar Lai str. 56601] gi|45658576|ref|YP_002662.1| NADH dehydrogenase subunit B [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|81471022|sp|Q8F7Q0|NUOB_LEPIN RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|81567883|sp|Q72NT7|NUOB_LEPIC RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|24194386|gb|AAN48093.1| NADH dehydrogenase (ubiquinone) chain B [Leptospira interrogans serovar Lai str. 56601] gi|45601820|gb|AAS71299.1| NADH dehydrogenase I B subunit [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 186 Score = 151 bits (381), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 71/159 (44%), Positives = 106/159 (66%), Gaps = 2/159 (1%) Query: 24 ADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFG 83 +D S+ + + +V+ ++ W R+ SL F ACC +E M + YD+ RFG Sbjct: 4 SDLSKTPGQALGDMVQLGNVESVIQWGRSYSLWPYPFATACCGIEYMSTACSDYDIARFG 63 Query: 84 FA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142 P SPRQ+D+++V GT+T KMA LR++YDQM EP++VIS+G+CA+ GG +H +Y V Sbjct: 64 AERPSFSPRQADMILVLGTITYKMAPVLRQIYDQMAEPKFVISVGACASSGGMFH-TYGV 122 Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181 ++G DRI+PVD+YVPGCPP EA++ +L LQ K++ G Sbjct: 123 LQGVDRILPVDVYVPGCPPRPEAILDALLKLQTKLKTQG 161 >gi|115523729|ref|YP_780640.1| NADH-quinone oxidoreductase, B subunit [Rhodopseudomonas palustris BisA53] gi|122296835|sp|Q07QX4|NUOB1_RHOP5 RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName: Full=NADH dehydrogenase I subunit B 1; AltName: Full=NDH-1 subunit B 1 gi|115517676|gb|ABJ05660.1| NADH-quinone oxidoreductase, B subunit [Rhodopseudomonas palustris BisA53] Length = 205 Score = 151 bits (381), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 72/140 (51%), Positives = 101/140 (72%), Gaps = 2/140 (1%) Query: 39 LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMI 97 L T ++ LV W+R SL FGL+CC VE + A P +D RFG RASPRQ+D+++ Sbjct: 23 LFTRLEDLVAWSRKNSLWPFNFGLSCCYVEQVTALTPVFDQARFGAEVIRASPRQADLLV 82 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 V+GT+ +KMA+ L R+Y+QM PR+VISMG+CAN GG Y YSVV+G D +PVD+Y+P Sbjct: 83 VSGTVFHKMAAPLLRLYEQMRAPRWVISMGACANSGGMYDV-YSVVQGVDSFLPVDVYIP 141 Query: 158 GCPPTAEALIYGILLLQKKI 177 GCPP EA++ ++LLQ+++ Sbjct: 142 GCPPRPEAVLDALILLQQQV 161 >gi|332971177|gb|EGK10141.1| NADH-quinone oxidoreductase subunit B [Psychrobacter sp. 1501(2011)] Length = 222 Score = 151 bits (381), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 79/144 (54%), Positives = 96/144 (66%), Gaps = 2/144 (1%) Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95 G L V W R SL FG +CC VE +DL RFG RASPRQ+DV Sbjct: 38 GKLEDMVHASANWGRKHSLWPFNFGTSCCYVEYATTLTAVHDLSRFGAEVIRASPRQADV 97 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155 MIVAGT KMA ++R+Y+QM EP++VISMGSCAN GG Y YSVV+G D+I+PVD+Y Sbjct: 98 MIVAGTCFVKMAPVIQRLYEQMLEPKWVISMGSCANSGGMYDI-YSVVQGVDKIIPVDVY 156 Query: 156 VPGCPPTAEALIYGILLLQKKIRR 179 VPGCPP EALI G++LLQ+ I + Sbjct: 157 VPGCPPRPEALIQGLMLLQESITK 180 >gi|261885026|ref|ZP_06009065.1| NADH-quinone oxidoreductase chain b [Campylobacter fetus subsp. venerealis str. Azul-94] Length = 168 Score = 151 bits (381), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 70/148 (47%), Positives = 99/148 (66%), Gaps = 2/148 (1%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF-GFAPRAS 89 + ++T +D L W R SL M FG ACCA+E M A ++DL RF R S Sbjct: 4 ENLVQNDVVLTRLDALFNWGRKNSLWPMIFGTACCAIEFMSAVSSKHDLSRFEAEVMRFS 63 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQ+D+MI+AGT++ K A L+ +YDQM EP++V+SMG+CA GG+Y +Y+ ++G D+I Sbjct: 64 PRQADLMIIAGTISFKQAPILKEIYDQMCEPKWVVSMGACACSGGFYD-NYTTLQGIDQI 122 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKI 177 +PVD+Y+ GCPP EA+I IL +Q KI Sbjct: 123 IPVDVYISGCPPRPEAIIDAILAIQDKI 150 >gi|292488843|ref|YP_003531730.1| NADH dehydrogenase I subunit B [Erwinia amylovora CFBP1430] gi|292899993|ref|YP_003539362.1| NADH dehydrogenase I chain B [Erwinia amylovora ATCC 49946] gi|291199841|emb|CBJ46965.1| NADH dehydrogenase I chain B [Erwinia amylovora ATCC 49946] gi|291554277|emb|CBA21599.1| NADH dehydrogenase I chain B [Erwinia amylovora CFBP1430] gi|312173002|emb|CBX81257.1| NADH dehydrogenase I chain B [Erwinia amylovora ATCC BAA-2158] Length = 224 Score = 151 bits (381), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 74/142 (52%), Positives = 97/142 (68%), Gaps = 2/142 (1%) Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95 G L ++ +V W R SL FGL+CC VEM + +D+ RFG RASPRQ+D Sbjct: 40 GKLEHALHDMVNWGRKNSLWPFNFGLSCCYVEMTTSFTAVHDVARFGSEVIRASPRQADF 99 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155 M+VAGT KMA ++R+YDQM EP++VISMG+CAN GG Y YSVV+G D+ +PVD+Y Sbjct: 100 MVVAGTCFTKMAPVIQRLYDQMLEPKWVISMGACANSGGMYDI-YSVVQGVDKFLPVDVY 158 Query: 156 VPGCPPTAEALIYGILLLQKKI 177 +PGCPP EA + +LLLQ+ I Sbjct: 159 IPGCPPRPEAYMQALLLLQESI 180 >gi|15832425|ref|NP_311198.1| NADH dehydrogenase subunit B [Escherichia coli O157:H7 str. Sakai] gi|16130222|ref|NP_416790.1| NADH:ubiquinone oxidoreductase, chain B [Escherichia coli str. K-12 substr. MG1655] gi|24113659|ref|NP_708169.1| NADH dehydrogenase subunit B [Shigella flexneri 2a str. 301] gi|26248674|ref|NP_754714.1| NADH dehydrogenase subunit B [Escherichia coli CFT073] gi|30063713|ref|NP_837884.1| NADH dehydrogenase subunit B [Shigella flexneri 2a str. 2457T] gi|74312805|ref|YP_311224.1| NADH dehydrogenase subunit B [Shigella sonnei Ss046] gi|82544765|ref|YP_408712.1| NADH dehydrogenase subunit B [Shigella boydii Sb227] gi|89109105|ref|AP_002885.1| NADH:ubiquinone oxidoreductase, chain B [Escherichia coli str. K-12 substr. W3110] gi|91211579|ref|YP_541565.1| NADH dehydrogenase subunit B [Escherichia coli UTI89] gi|110642491|ref|YP_670221.1| NADH dehydrogenase subunit B [Escherichia coli 536] gi|110806250|ref|YP_689770.1| NADH dehydrogenase subunit B [Shigella flexneri 5 str. 8401] gi|117624476|ref|YP_853389.1| NADH dehydrogenase subunit B [Escherichia coli APEC O1] gi|157155733|ref|YP_001463630.1| NADH dehydrogenase subunit B [Escherichia coli E24377A] gi|157161775|ref|YP_001459093.1| NADH dehydrogenase subunit B [Escherichia coli HS] gi|168748136|ref|ZP_02773158.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli O157:H7 str. EC4113] gi|168755039|ref|ZP_02780046.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli O157:H7 str. EC4401] gi|168761274|ref|ZP_02786281.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli O157:H7 str. EC4501] gi|168767913|ref|ZP_02792920.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli O157:H7 str. EC4486] gi|168772987|ref|ZP_02797994.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli O157:H7 str. EC4196] gi|168780142|ref|ZP_02805149.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli O157:H7 str. EC4076] gi|168787194|ref|ZP_02812201.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli O157:H7 str. EC869] gi|168798457|ref|ZP_02823464.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli O157:H7 str. EC508] gi|170019404|ref|YP_001724358.1| NADH dehydrogenase subunit B [Escherichia coli ATCC 8739] gi|170081904|ref|YP_001731224.1| NADH:ubiquinone oxidoreductase, chain B [Escherichia coli str. K-12 substr. DH10B] gi|170681065|ref|YP_001744485.1| NADH dehydrogenase subunit B [Escherichia coli SMS-3-5] gi|170767483|ref|ZP_02901936.1| NADH-quinone oxidoreductase, B subunit [Escherichia albertii TW07627] gi|187732051|ref|YP_001881108.1| NADH dehydrogenase subunit B [Shigella boydii CDC 3083-94] gi|188491795|ref|ZP_02999065.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli 53638] gi|191166481|ref|ZP_03028311.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli B7A] gi|191169994|ref|ZP_03031548.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli F11] gi|193062269|ref|ZP_03043364.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli E22] gi|193068244|ref|ZP_03049208.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli E110019] gi|194427226|ref|ZP_03059777.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli B171] gi|194433374|ref|ZP_03065654.1| NADH-quinone oxidoreductase, B subunit [Shigella dysenteriae 1012] gi|194435968|ref|ZP_03068070.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli 101-1] gi|195935664|ref|ZP_03081046.1| NADH dehydrogenase subunit B [Escherichia coli O157:H7 str. EC4024] gi|208808363|ref|ZP_03250700.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli O157:H7 str. EC4206] gi|208814079|ref|ZP_03255408.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli O157:H7 str. EC4045] gi|208821251|ref|ZP_03261571.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli O157:H7 str. EC4042] gi|209400872|ref|YP_002271696.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli O157:H7 str. EC4115] gi|209919735|ref|YP_002293819.1| NADH dehydrogenase subunit B [Escherichia coli SE11] gi|215487500|ref|YP_002329931.1| NADH dehydrogenase subunit B [Escherichia coli O127:H6 str. E2348/69] gi|217327914|ref|ZP_03443997.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli O157:H7 str. TW14588] gi|218548264|ref|YP_002382055.1| NADH dehydrogenase subunit B [Escherichia fergusonii ATCC 35469] gi|218554843|ref|YP_002387756.1| NADH dehydrogenase subunit B [Escherichia coli IAI1] gi|218559200|ref|YP_002392113.1| NADH dehydrogenase subunit B [Escherichia coli S88] gi|218690447|ref|YP_002398659.1| NADH dehydrogenase subunit B [Escherichia coli ED1a] gi|218695886|ref|YP_002403553.1| NADH dehydrogenase subunit B [Escherichia coli 55989] gi|218700761|ref|YP_002408390.1| NADH dehydrogenase subunit B [Escherichia coli IAI39] gi|218705817|ref|YP_002413336.1| NADH dehydrogenase subunit B [Escherichia coli UMN026] gi|227887343|ref|ZP_04005148.1| NADH dehydrogenase subunit B [Escherichia coli 83972] gi|237704761|ref|ZP_04535242.1| trifunctional NADH dehydrogenase I subunit B/C/D [Escherichia sp. 3_2_53FAA] gi|238901462|ref|YP_002927258.1| NADH:ubiquinone oxidoreductase, chain B [Escherichia coli BW2952] gi|253772791|ref|YP_003035622.1| NADH dehydrogenase subunit B [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254162296|ref|YP_003045404.1| NADH dehydrogenase subunit B [Escherichia coli B str. REL606] gi|254794179|ref|YP_003079016.1| NADH dehydrogenase subunit B [Escherichia coli O157:H7 str. TW14359] gi|256017557|ref|ZP_05431422.1| NADH dehydrogenase subunit B [Shigella sp. D9] gi|256022029|ref|ZP_05435894.1| NADH dehydrogenase subunit B [Escherichia sp. 4_1_40B] gi|260844874|ref|YP_003222652.1| NADH:ubiquinone oxidoreductase, chain B [Escherichia coli O103:H2 str. 12009] gi|260856331|ref|YP_003230222.1| NADH:ubiquinone oxidoreductase, chain B [Escherichia coli O26:H11 str. 11368] gi|260869010|ref|YP_003235412.1| NADH:ubiquinone oxidoreductase, chain B [Escherichia coli O111:H- str. 11128] gi|261223259|ref|ZP_05937540.1| NADH:ubiquinone oxidoreductase, chain B [Escherichia coli O157:H7 str. FRIK2000] gi|261259191|ref|ZP_05951724.1| NADH:ubiquinone oxidoreductase, chain B [Escherichia coli O157:H7 str. FRIK966] gi|291283528|ref|YP_003500346.1| NADH-quinone oxidoreductase subunit B [Escherichia coli O55:H7 str. CB9615] gi|293405753|ref|ZP_06649745.1| NADH-quinone oxidoreductase subunit B [Escherichia coli FVEC1412] gi|293410647|ref|ZP_06654223.1| NADH dehydrogenase subunit B [Escherichia coli B354] gi|293415580|ref|ZP_06658223.1| NADH-quinone oxidoreductase subunit B [Escherichia coli B185] gi|293446624|ref|ZP_06663046.1| NADH dehydrogenase I subunit B [Escherichia coli B088] gi|297517328|ref|ZP_06935714.1| NADH dehydrogenase subunit B [Escherichia coli OP50] gi|298381436|ref|ZP_06991035.1| NADH-quinone oxidoreductase subunit B [Escherichia coli FVEC1302] gi|300818112|ref|ZP_07098324.1| NADH dehydrogenase subunit B [Escherichia coli MS 107-1] gi|300822158|ref|ZP_07102300.1| NADH dehydrogenase subunit B [Escherichia coli MS 119-7] gi|300896961|ref|ZP_07115442.1| NADH dehydrogenase subunit B [Escherichia coli MS 198-1] gi|300903672|ref|ZP_07121588.1| NADH dehydrogenase subunit B [Escherichia coli MS 84-1] gi|300924546|ref|ZP_07140510.1| NADH dehydrogenase subunit B [Escherichia coli MS 182-1] gi|300931360|ref|ZP_07146691.1| NADH dehydrogenase subunit B [Escherichia coli MS 187-1] gi|300936852|ref|ZP_07151741.1| NADH dehydrogenase subunit B [Escherichia coli MS 21-1] gi|300948569|ref|ZP_07162662.1| NADH dehydrogenase subunit B [Escherichia coli MS 116-1] gi|300956453|ref|ZP_07168742.1| NADH dehydrogenase subunit B [Escherichia coli MS 175-1] gi|300981071|ref|ZP_07175343.1| NADH dehydrogenase subunit B [Escherichia coli MS 200-1] gi|300983382|ref|ZP_07176566.1| NADH dehydrogenase subunit B [Escherichia coli MS 45-1] gi|301024085|ref|ZP_07187799.1| NADH dehydrogenase subunit B [Escherichia coli MS 69-1] gi|301049040|ref|ZP_07196025.1| NADH dehydrogenase subunit B [Escherichia coli MS 185-1] gi|301303254|ref|ZP_07209379.1| NADH dehydrogenase subunit B [Escherichia coli MS 124-1] gi|301328779|ref|ZP_07221827.1| NADH dehydrogenase subunit B [Escherichia coli MS 78-1] gi|301647616|ref|ZP_07247412.1| NADH dehydrogenase subunit B [Escherichia coli MS 146-1] gi|306814602|ref|ZP_07448764.1| NADH dehydrogenase subunit B [Escherichia coli NC101] gi|307138951|ref|ZP_07498307.1| NADH dehydrogenase subunit B [Escherichia coli H736] gi|307311153|ref|ZP_07590797.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli W] gi|309793166|ref|ZP_07687594.1| NADH dehydrogenase subunit B [Escherichia coli MS 145-7] gi|312967585|ref|ZP_07781800.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli 2362-75] gi|312973454|ref|ZP_07787626.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli 1827-70] gi|331642925|ref|ZP_08344060.1| NADH dehydrogenase I subunit B [Escherichia coli H736] gi|331647942|ref|ZP_08349034.1| NADH dehydrogenase I subunit B [Escherichia coli M605] gi|331653729|ref|ZP_08354730.1| NADH dehydrogenase I subunit B [Escherichia coli M718] gi|331658369|ref|ZP_08359331.1| NADH dehydrogenase I subunit B [Escherichia coli TA206] gi|331663802|ref|ZP_08364712.1| NADH dehydrogenase I subunit B [Escherichia coli TA143] gi|331668985|ref|ZP_08369833.1| NADH dehydrogenase I subunit B [Escherichia coli TA271] gi|331673790|ref|ZP_08374553.1| NADH dehydrogenase I subunit B [Escherichia coli TA280] gi|331678233|ref|ZP_08378908.1| NADH dehydrogenase I subunit B [Escherichia coli H591] gi|331683958|ref|ZP_08384554.1| NADH dehydrogenase I subunit B [Escherichia coli H299] gi|332278567|ref|ZP_08390980.1| NADH:ubiquinone oxidoreductase chain B [Shigella sp. D9] gi|84028744|sp|P0AFC9|NUOB_ECO57 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B; AltName: Full=NUO2 gi|84028745|sp|P0AFC8|NUOB_ECOL6 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B; AltName: Full=NUO2 gi|84028746|sp|P0AFC7|NUOB_ECOLI RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B; AltName: Full=NUO2 gi|84028747|sp|P0AFD0|NUOB_SHIFL RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|122423113|sp|Q1R9D0|NUOB_ECOUT RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|122957324|sp|Q0T2K0|NUOB_SHIF8 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|123147875|sp|Q0TFF9|NUOB_ECOL5 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|123559142|sp|Q31YH4|NUOB_SHIBS RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|123616691|sp|Q3YZS3|NUOB_SHISS RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|238065125|sp|A7ZPA1|NUOB_ECO24 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|238065126|sp|B7UFU5|NUOB_ECO27 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|238065127|sp|B7MG51|NUOB_ECO45 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|238065128|sp|B7LBP8|NUOB_ECO55 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|238065129|sp|B5YXS7|NUOB_ECO5E RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|238065130|sp|B7NNW6|NUOB_ECO7I RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|238065131|sp|B7MXW6|NUOB_ECO81 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|238065132|sp|B7M5W6|NUOB_ECO8A RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|238065133|sp|B1X8Z9|NUOB_ECODH RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|238065134|sp|A8A2F6|NUOB_ECOHS RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|238065135|sp|A1ADD5|NUOB_ECOK1 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|238065136|sp|B1IXQ5|NUOB_ECOLC RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|238065137|sp|B7N5P9|NUOB_ECOLU RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|238065138|sp|B6I7N7|NUOB_ECOSE RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|238065139|sp|B1LLP0|NUOB_ECOSM RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|238065143|sp|B7LM45|NUOB_ESCF3 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|238065216|sp|B2TW68|NUOB_SHIB3 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|259514662|sp|C4ZUD0|NUOB_ECOBW RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|26109079|gb|AAN81282.1|AE016763_241 NADH dehydrogenase I chain B [Escherichia coli CFT073] gi|1788624|gb|AAC75347.1| NADH:ubiquinone oxidoreductase, chain B [Escherichia coli str. K-12 substr. MG1655] gi|13362641|dbj|BAB36594.1| NADH dehydrogenase I chain B [Escherichia coli O157:H7 str. Sakai] gi|24052724|gb|AAN43876.1| NADH dehydrogenase I chain B [Shigella flexneri 2a str. 301] gi|30041968|gb|AAP17694.1| NADH dehydrogenase I chain B [Shigella flexneri 2a str. 2457T] gi|73856282|gb|AAZ88989.1| NADH dehydrogenase I chain B [Shigella sonnei Ss046] gi|81246176|gb|ABB66884.1| NADH dehydrogenase I chain B [Shigella boydii Sb227] gi|85675345|dbj|BAA16121.2| NADH:ubiquinone oxidoreductase, chain B [Escherichia coli str. K12 substr. W3110] gi|91073153|gb|ABE08034.1| NADH dehydrogenase I chain B [Escherichia coli UTI89] gi|110344083|gb|ABG70320.1| NADH dehydrogenase I chain B [Escherichia coli 536] gi|110615798|gb|ABF04465.1| NADH dehydrogenase I chain B [Shigella flexneri 5 str. 8401] gi|115513600|gb|ABJ01675.1| NADH dehydrogenase subunit B [Escherichia coli APEC O1] gi|157067455|gb|ABV06710.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli HS] gi|157077763|gb|ABV17471.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli E24377A] gi|169754332|gb|ACA77031.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli ATCC 8739] gi|169889739|gb|ACB03446.1| NADH:ubiquinone oxidoreductase, chain B [Escherichia coli str. K-12 substr. DH10B] gi|170123817|gb|EDS92748.1| NADH-quinone oxidoreductase, B subunit [Escherichia albertii TW07627] gi|170518783|gb|ACB16961.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli SMS-3-5] gi|187429043|gb|ACD08317.1| NADH-quinone oxidoreductase, B subunit [Shigella boydii CDC 3083-94] gi|187771211|gb|EDU35055.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli O157:H7 str. EC4196] gi|188017366|gb|EDU55488.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli O157:H7 str. EC4113] gi|188486994|gb|EDU62097.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli 53638] gi|189001940|gb|EDU70926.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli O157:H7 str. EC4076] gi|189357731|gb|EDU76150.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli O157:H7 str. EC4401] gi|189362998|gb|EDU81417.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli O157:H7 str. EC4486] gi|189368240|gb|EDU86656.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli O157:H7 str. EC4501] gi|189372840|gb|EDU91256.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli O157:H7 str. EC869] gi|189378981|gb|EDU97397.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli O157:H7 str. EC508] gi|190903441|gb|EDV63160.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli B7A] gi|190909510|gb|EDV69095.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli F11] gi|192931935|gb|EDV84534.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli E22] gi|192958523|gb|EDV88962.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli E110019] gi|194414847|gb|EDX31118.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli B171] gi|194418468|gb|EDX34557.1| NADH-quinone oxidoreductase, B subunit [Shigella dysenteriae 1012] gi|194424696|gb|EDX40681.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli 101-1] gi|208728164|gb|EDZ77765.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli O157:H7 str. EC4206] gi|208735356|gb|EDZ84043.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli O157:H7 str. EC4045] gi|208741374|gb|EDZ89056.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli O157:H7 str. EC4042] gi|209162272|gb|ACI39705.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli O157:H7 str. EC4115] gi|209765078|gb|ACI80851.1| NADH dehydrogenase I chain B [Escherichia coli] gi|209765080|gb|ACI80852.1| NADH dehydrogenase I chain B [Escherichia coli] gi|209765082|gb|ACI80853.1| NADH dehydrogenase I chain B [Escherichia coli] gi|209765084|gb|ACI80854.1| NADH dehydrogenase I chain B [Escherichia coli] gi|209765086|gb|ACI80855.1| NADH dehydrogenase I chain B [Escherichia coli] gi|209912994|dbj|BAG78068.1| NADH dehydrogenase I chain B [Escherichia coli SE11] gi|215265572|emb|CAS09975.1| NADH: ubiquinone oxidoreductase, chain B [Escherichia coli O127:H6 str. E2348/69] gi|217320281|gb|EEC28706.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli O157:H7 str. TW14588] gi|218352618|emb|CAU98399.1| NADH:ubiquinone oxidoreductase, chain B [Escherichia coli 55989] gi|218355805|emb|CAQ88418.1| NADH:ubiquinone oxidoreductase, chain B [Escherichia fergusonii ATCC 35469] gi|218361611|emb|CAQ99203.1| NADH:ubiquinone oxidoreductase, chain B [Escherichia coli IAI1] gi|218365969|emb|CAR03713.1| NADH:ubiquinone oxidoreductase, chain B [Escherichia coli S88] gi|218370747|emb|CAR18560.1| NADH:ubiquinone oxidoreductase, chain B [Escherichia coli IAI39] gi|218428011|emb|CAR08932.2| NADH:ubiquinone oxidoreductase, chain B [Escherichia coli ED1a] gi|218432914|emb|CAR13808.1| NADH:ubiquinone oxidoreductase, chain B [Escherichia coli UMN026] gi|222034043|emb|CAP76784.1| NadH-quinone oxidoreductase subunit B [Escherichia coli LF82] gi|226901127|gb|EEH87386.1| trifunctional NADH dehydrogenase I subunit B/C/D [Escherichia sp. 3_2_53FAA] gi|227835693|gb|EEJ46159.1| NADH dehydrogenase subunit B [Escherichia coli 83972] gi|238861867|gb|ACR63865.1| NADH:ubiquinone oxidoreductase, chain B [Escherichia coli BW2952] gi|242377920|emb|CAQ32689.1| NADH:ubiquinone oxidoreductase, chain B, subunit of connecting fragment of NADH dehydrogenase I and NADH:ubiquinone oxidoreductase I [Escherichia coli BL21(DE3)] gi|253323835|gb|ACT28437.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253974197|gb|ACT39868.1| NADH dehydrogenase subunit B [Escherichia coli B str. REL606] gi|253978364|gb|ACT44034.1| NADH dehydrogenase subunit B [Escherichia coli BL21(DE3)] gi|254593579|gb|ACT72940.1| NADH:ubiquinone oxidoreductase, chain B [Escherichia coli O157:H7 str. TW14359] gi|257754980|dbj|BAI26482.1| NADH:ubiquinone oxidoreductase, chain B [Escherichia coli O26:H11 str. 11368] gi|257760021|dbj|BAI31518.1| NADH:ubiquinone oxidoreductase, chain B [Escherichia coli O103:H2 str. 12009] gi|257765366|dbj|BAI36861.1| NADH:ubiquinone oxidoreductase, chain B [Escherichia coli O111:H- str. 11128] gi|260448620|gb|ACX39042.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli DH1] gi|281179374|dbj|BAI55704.1| NADH dehydrogenase I chain B [Escherichia coli SE15] gi|281601728|gb|ADA74712.1| NADH-quinone oxidoreductase subunit B [Shigella flexneri 2002017] gi|284922275|emb|CBG35360.1| NADH-quinone oxidoreductase subunit B [Escherichia coli 042] gi|290763401|gb|ADD57362.1| NADH-quinone oxidoreductase subunit B [Escherichia coli O55:H7 str. CB9615] gi|291323454|gb|EFE62882.1| NADH dehydrogenase I subunit B [Escherichia coli B088] gi|291427961|gb|EFF00988.1| NADH-quinone oxidoreductase subunit B [Escherichia coli FVEC1412] gi|291433228|gb|EFF06207.1| NADH-quinone oxidoreductase subunit B [Escherichia coli B185] gi|291471115|gb|EFF13599.1| NADH dehydrogenase subunit B [Escherichia coli B354] gi|294490294|gb|ADE89050.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli IHE3034] gi|298278878|gb|EFI20392.1| NADH-quinone oxidoreductase subunit B [Escherichia coli FVEC1302] gi|300299149|gb|EFJ55534.1| NADH dehydrogenase subunit B [Escherichia coli MS 185-1] gi|300307684|gb|EFJ62204.1| NADH dehydrogenase subunit B [Escherichia coli MS 200-1] gi|300316723|gb|EFJ66507.1| NADH dehydrogenase subunit B [Escherichia coli MS 175-1] gi|300359229|gb|EFJ75099.1| NADH dehydrogenase subunit B [Escherichia coli MS 198-1] gi|300396741|gb|EFJ80279.1| NADH dehydrogenase subunit B [Escherichia coli MS 69-1] gi|300404328|gb|EFJ87866.1| NADH dehydrogenase subunit B [Escherichia coli MS 84-1] gi|300408548|gb|EFJ92086.1| NADH dehydrogenase subunit B [Escherichia coli MS 45-1] gi|300419264|gb|EFK02575.1| NADH dehydrogenase subunit B [Escherichia coli MS 182-1] gi|300451917|gb|EFK15537.1| NADH dehydrogenase subunit B [Escherichia coli MS 116-1] gi|300458039|gb|EFK21532.1| NADH dehydrogenase subunit B [Escherichia coli MS 21-1] gi|300460822|gb|EFK24315.1| NADH dehydrogenase subunit B [Escherichia coli MS 187-1] gi|300525288|gb|EFK46357.1| NADH dehydrogenase subunit B [Escherichia coli MS 119-7] gi|300529256|gb|EFK50318.1| NADH dehydrogenase subunit B [Escherichia coli MS 107-1] gi|300841428|gb|EFK69188.1| NADH dehydrogenase subunit B [Escherichia coli MS 124-1] gi|300844841|gb|EFK72601.1| NADH dehydrogenase subunit B [Escherichia coli MS 78-1] gi|301074243|gb|EFK89049.1| NADH dehydrogenase subunit B [Escherichia coli MS 146-1] gi|305851996|gb|EFM52448.1| NADH dehydrogenase subunit B [Escherichia coli NC101] gi|306908659|gb|EFN39156.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli W] gi|307554349|gb|ADN47124.1| NADH dehydrogenase I chain B [Escherichia coli ABU 83972] gi|307626177|gb|ADN70481.1| NADH dehydrogenase subunit B [Escherichia coli UM146] gi|308123452|gb|EFO60714.1| NADH dehydrogenase subunit B [Escherichia coli MS 145-7] gi|309702599|emb|CBJ01927.1| NADH-quinone oxidoreductase subunit B [Escherichia coli ETEC H10407] gi|310332049|gb|EFP99284.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli 1827-70] gi|312287782|gb|EFR15687.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli 2362-75] gi|312946905|gb|ADR27732.1| NADH dehydrogenase subunit B [Escherichia coli O83:H1 str. NRG 857C] gi|313651110|gb|EFS15509.1| NADH-quinone oxidoreductase, B subunit [Shigella flexneri 2a str. 2457T] gi|315061579|gb|ADT75906.1| NADH:ubiquinone oxidoreductase, chain B [Escherichia coli W] gi|315136921|dbj|BAJ44080.1| NADH-quinone oxidoreductase subunit B [Escherichia coli DH1] gi|315255221|gb|EFU35189.1| NADH dehydrogenase subunit B [Escherichia coli MS 85-1] gi|315285913|gb|EFU45351.1| NADH dehydrogenase subunit B [Escherichia coli MS 110-3] gi|315292240|gb|EFU51592.1| NADH dehydrogenase subunit B [Escherichia coli MS 153-1] gi|315298114|gb|EFU57383.1| NADH dehydrogenase subunit B [Escherichia coli MS 16-3] gi|315615556|gb|EFU96188.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli 3431] gi|320177169|gb|EFW52181.1| NADH-ubiquinone oxidoreductase chain B [Shigella dysenteriae CDC 74-1112] gi|320178740|gb|EFW53703.1| NADH-ubiquinone oxidoreductase chain B [Shigella boydii ATCC 9905] gi|320183382|gb|EFW58234.1| NADH-ubiquinone oxidoreductase chain B [Shigella flexneri CDC 796-83] gi|320192092|gb|EFW66737.1| NADH-ubiquinone oxidoreductase chain B [Escherichia coli O157:H7 str. EC1212] gi|320196154|gb|EFW70778.1| NADH-ubiquinone oxidoreductase chain B [Escherichia coli WV_060327] gi|320199875|gb|EFW74464.1| NADH-ubiquinone oxidoreductase chain B [Escherichia coli EC4100B] gi|320641114|gb|EFX10593.1| NADH dehydrogenase subunit B [Escherichia coli O157:H7 str. G5101] gi|320646502|gb|EFX15421.1| NADH dehydrogenase subunit B [Escherichia coli O157:H- str. 493-89] gi|320651599|gb|EFX19979.1| NADH dehydrogenase subunit B [Escherichia coli O157:H- str. H 2687] gi|320657351|gb|EFX25153.1| NADH dehydrogenase subunit B [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320663053|gb|EFX30370.1| NADH dehydrogenase subunit B [Escherichia coli O55:H7 str. USDA 5905] gi|320667871|gb|EFX34779.1| NADH dehydrogenase subunit B [Escherichia coli O157:H7 str. LSU-61] gi|323156437|gb|EFZ42592.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli EPECa14] gi|323161621|gb|EFZ47506.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli E128010] gi|323168543|gb|EFZ54223.1| NADH-quinone oxidoreductase, B subunit [Shigella sonnei 53G] gi|323171969|gb|EFZ57613.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli LT-68] gi|323176788|gb|EFZ62378.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli 1180] gi|323184394|gb|EFZ69770.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli 1357] gi|323187988|gb|EFZ73283.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli RN587/1] gi|323377841|gb|ADX50109.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli KO11] gi|323936577|gb|EGB32864.1| NADH-quinone oxidoreductase [Escherichia coli E1520] gi|323941016|gb|EGB37203.1| NADH-quinone oxidoreductase [Escherichia coli E482] gi|323944800|gb|EGB40866.1| NADH-quinone oxidoreductase [Escherichia coli H120] gi|323952080|gb|EGB47954.1| NADH-quinone oxidoreductase [Escherichia coli H252] gi|323956053|gb|EGB51806.1| NADH-quinone oxidoreductase [Escherichia coli H263] gi|323961470|gb|EGB57080.1| NADH-quinone oxidoreductase [Escherichia coli H489] gi|323967728|gb|EGB63140.1| NADH-quinone oxidoreductase [Escherichia coli M863] gi|323973008|gb|EGB68202.1| NADH-quinone oxidoreductase [Escherichia coli TA007] gi|323977512|gb|EGB72598.1| NADH-quinone oxidoreductase [Escherichia coli TW10509] gi|324006663|gb|EGB75882.1| NADH dehydrogenase subunit B [Escherichia coli MS 57-2] gi|324013173|gb|EGB82392.1| NADH dehydrogenase subunit B [Escherichia coli MS 60-1] gi|324020883|gb|EGB90102.1| NADH dehydrogenase subunit B [Escherichia coli MS 117-3] gi|324112819|gb|EGC06795.1| NADH-quinone oxidoreductase [Escherichia fergusonii B253] gi|324117835|gb|EGC11734.1| NADH-quinone oxidoreductase [Escherichia coli E1167] gi|325496678|gb|EGC94537.1| NADH dehydrogenase subunit B [Escherichia fergusonii ECD227] gi|326339638|gb|EGD63449.1| NADH-ubiquinone oxidoreductase chain B [Escherichia coli O157:H7 str. 1125] gi|326344100|gb|EGD67861.1| NADH-ubiquinone oxidoreductase chain B [Escherichia coli O157:H7 str. 1044] gi|327252557|gb|EGE64216.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli STEC_7v] gi|330912112|gb|EGH40622.1| NADH-ubiquinone oxidoreductase chain B [Escherichia coli AA86] gi|331039723|gb|EGI11943.1| NADH dehydrogenase I subunit B [Escherichia coli H736] gi|331043666|gb|EGI15804.1| NADH dehydrogenase I subunit B [Escherichia coli M605] gi|331048578|gb|EGI20654.1| NADH dehydrogenase I subunit B [Escherichia coli M718] gi|331056617|gb|EGI28626.1| NADH dehydrogenase I subunit B [Escherichia coli TA206] gi|331059601|gb|EGI31578.1| NADH dehydrogenase I subunit B [Escherichia coli TA143] gi|331064179|gb|EGI36090.1| NADH dehydrogenase I subunit B [Escherichia coli TA271] gi|331069063|gb|EGI40455.1| NADH dehydrogenase I subunit B [Escherichia coli TA280] gi|331074693|gb|EGI46013.1| NADH dehydrogenase I subunit B [Escherichia coli H591] gi|331078910|gb|EGI50112.1| NADH dehydrogenase I subunit B [Escherichia coli H299] gi|332088417|gb|EGI93535.1| NADH-quinone oxidoreductase, B subunit [Shigella boydii 5216-82] gi|332090619|gb|EGI95715.1| NADH-quinone oxidoreductase, B subunit [Shigella dysenteriae 155-74] gi|332093356|gb|EGI98414.1| NADH-quinone oxidoreductase, B subunit [Shigella boydii 3594-74] gi|332100919|gb|EGJ04265.1| NADH:ubiquinone oxidoreductase chain B [Shigella sp. D9] gi|332344068|gb|AEE57402.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli UMNK88] gi|332754935|gb|EGJ85300.1| NADH-quinone oxidoreductase, B subunit [Shigella flexneri 4343-70] gi|332755336|gb|EGJ85700.1| NADH-quinone oxidoreductase, B subunit [Shigella flexneri K-671] gi|332756446|gb|EGJ86797.1| NADH-quinone oxidoreductase, B subunit [Shigella flexneri 2747-71] gi|332766106|gb|EGJ96316.1| nuoB [Shigella flexneri 2930-71] gi|333001431|gb|EGK20999.1| NADH-quinone oxidoreductase, B subunit [Shigella flexneri VA-6] gi|333001890|gb|EGK21456.1| NADH-quinone oxidoreductase, B subunit [Shigella flexneri K-218] gi|333002654|gb|EGK22214.1| NADH-quinone oxidoreductase, B subunit [Shigella flexneri K-272] gi|333016449|gb|EGK35780.1| NADH-quinone oxidoreductase, B subunit [Shigella flexneri K-304] gi|333016538|gb|EGK35868.1| NADH-quinone oxidoreductase, B subunit [Shigella flexneri K-227] Length = 220 Score = 151 bits (381), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 74/160 (46%), Positives = 107/160 (66%), Gaps = 3/160 (1%) Query: 19 LEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78 L+K + + E+ +K + ++ +V W R S+ FGL+CC VEM+ + +D Sbjct: 19 LQKQEIVTDPLEQEV-NKNVFMGKLNDMVNWGRKNSIWPYNFGLSCCYVEMVTSFTAVHD 77 Query: 79 LERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137 + RFG RASPRQ+D+M+VAGT KMA ++R+YDQM EP++VISMG+CAN GG Y Sbjct: 78 VARFGAEVLRASPRQADLMVVAGTCFTKMAPVIQRLYDQMLEPKWVISMGACANSGGMYD 137 Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 YSVV+G D+ +PVD+Y+PGCPP EA + ++LLQ+ I Sbjct: 138 I-YSVVQGVDKFIPVDVYIPGCPPRPEAYMQALMLLQESI 176 >gi|259907928|ref|YP_002648284.1| NADH dehydrogenase subunit B [Erwinia pyrifoliae Ep1/96] gi|224963550|emb|CAX55040.1| NADH dehydrogenase I chain B [Erwinia pyrifoliae Ep1/96] gi|283477809|emb|CAY73725.1| NADH dehydrogenase I chain B [Erwinia pyrifoliae DSM 12163] Length = 224 Score = 151 bits (381), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 74/142 (52%), Positives = 97/142 (68%), Gaps = 2/142 (1%) Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95 G L ++ +V W R SL FGL+CC VEM + +D+ RFG RASPRQ+D Sbjct: 40 GKLEHALHDMVNWGRKNSLWPFNFGLSCCYVEMTTSFTAVHDVARFGSEVIRASPRQADF 99 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155 M+VAGT KMA ++R+YDQM EP++VISMG+CAN GG Y YSVV+G D+ +PVD+Y Sbjct: 100 MVVAGTCFTKMAPVIQRLYDQMLEPKWVISMGACANSGGMYDI-YSVVQGVDKFLPVDVY 158 Query: 156 VPGCPPTAEALIYGILLLQKKI 177 +PGCPP EA + +LLLQ+ I Sbjct: 159 IPGCPPRPEAYMQALLLLQESI 180 >gi|322831985|ref|YP_004212012.1| NADH-quinone oxidoreductase, B subunit [Rahnella sp. Y9602] gi|321167186|gb|ADW72885.1| NADH-quinone oxidoreductase, B subunit [Rahnella sp. Y9602] Length = 224 Score = 151 bits (381), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 75/142 (52%), Positives = 98/142 (69%), Gaps = 2/142 (1%) Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95 G L S+ +V W R SL FGL+CC VEM+ + +D+ RFG RASPRQ+D Sbjct: 40 GNLQESLHGMVNWGRKNSLWPYNFGLSCCYVEMVTSFTAVHDVARFGAEVLRASPRQADF 99 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155 M+VAGT KMA ++R+YDQM EP++VISMG+CAN GG Y YSVV+G D+ +PVD+Y Sbjct: 100 MVVAGTCFTKMAPVIQRLYDQMLEPKWVISMGACANSGGMYDI-YSVVQGVDKFLPVDVY 158 Query: 156 VPGCPPTAEALIYGILLLQKKI 177 +PGCPP EA + +LLLQ+ I Sbjct: 159 IPGCPPRPEAYMQALLLLQESI 180 >gi|71065152|ref|YP_263879.1| NADH dehydrogenase subunit B [Psychrobacter arcticus 273-4] gi|123649364|sp|Q4FU63|NUOB_PSYA2 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|71038137|gb|AAZ18445.1| NADH dehydrogenase I, B subunit [Psychrobacter arcticus 273-4] Length = 222 Score = 151 bits (381), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 78/144 (54%), Positives = 96/144 (66%), Gaps = 2/144 (1%) Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95 G L V W R SL FG +CC VE +DL RFG RASPRQ+DV Sbjct: 38 GRLEDLVHSTANWGRKHSLWPFNFGTSCCYVEYATTLTAVHDLSRFGAEVIRASPRQADV 97 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155 MIVAGT KMA ++R+Y+QM EP++VISMG+CAN GG Y YSVV+G D+I+PVD+Y Sbjct: 98 MIVAGTCFVKMAPVIQRLYEQMLEPKWVISMGACANSGGMYDI-YSVVQGVDKIIPVDVY 156 Query: 156 VPGCPPTAEALIYGILLLQKKIRR 179 VPGCPP EALI G++LLQ+ I + Sbjct: 157 VPGCPPRPEALIQGLMLLQESITK 180 >gi|304413372|ref|ZP_07394845.1| NADH:ubiquinone oxidoreductase, chain B [Candidatus Regiella insecticola LSR1] gi|304284215|gb|EFL92608.1| NADH:ubiquinone oxidoreductase, chain B [Candidatus Regiella insecticola LSR1] Length = 225 Score = 151 bits (381), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 74/144 (51%), Positives = 99/144 (68%), Gaps = 2/144 (1%) Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95 G L ++ +V W R SL FGL+CC VEM+ + +D+ RFG RASPRQ+D Sbjct: 41 GKLENALHDMVNWGRKNSLWPYNFGLSCCYVEMVTSFTAVHDVARFGAEVLRASPRQADF 100 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155 M+VAGT KMA ++R+Y+QM EP++VISMG+CAN GG Y YSVV+G D+ +PVD+Y Sbjct: 101 MVVAGTCFTKMAPVIQRLYEQMLEPKWVISMGACANSGGMYDI-YSVVQGVDKFLPVDVY 159 Query: 156 VPGCPPTAEALIYGILLLQKKIRR 179 +PGCPP EA + +LLLQK I + Sbjct: 160 IPGCPPRPEAYMQALLLLQKSIDK 183 >gi|93005404|ref|YP_579841.1| NADH dehydrogenase subunit B [Psychrobacter cryohalolentis K5] gi|122415842|sp|Q1QD96|NUOB_PSYCK RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|92393082|gb|ABE74357.1| NADH-quinone oxidoreductase, B subunit [Psychrobacter cryohalolentis K5] Length = 222 Score = 151 bits (381), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 78/144 (54%), Positives = 96/144 (66%), Gaps = 2/144 (1%) Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95 G L V W R SL FG +CC VE +DL RFG RASPRQ+DV Sbjct: 38 GRLEDLVHSTANWGRKHSLWPFNFGTSCCYVEYATTLTAVHDLSRFGAEVIRASPRQADV 97 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155 MIVAGT KMA ++R+Y+QM EP++VISMG+CAN GG Y YSVV+G D+I+PVD+Y Sbjct: 98 MIVAGTCFVKMAPVIQRLYEQMLEPKWVISMGACANSGGMYDI-YSVVQGVDKIIPVDVY 156 Query: 156 VPGCPPTAEALIYGILLLQKKIRR 179 VPGCPP EALI G++LLQ+ I + Sbjct: 157 VPGCPPRPEALIQGLMLLQESITK 180 >gi|283778533|ref|YP_003369288.1| NADH-quinone oxidoreductase, B subunit [Pirellula staleyi DSM 6068] gi|283436986|gb|ADB15428.1| NADH-quinone oxidoreductase, B subunit [Pirellula staleyi DSM 6068] Length = 192 Score = 151 bits (381), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 73/149 (48%), Positives = 98/149 (65%), Gaps = 2/149 (1%) Query: 36 KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSD 94 + +VT +D+L W R SL M F ACC +E+M R+DL RFG R SPRQ D Sbjct: 7 ENVMVTKLDELANWCRKNSLWPMPFATACCGIELMATGASRHDLARFGAEVFRFSPRQCD 66 Query: 95 VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154 +MIVAG + KM L+R++ QM EP++ ISMG+CA+ GG + +Y+VV+G DR +PVD+ Sbjct: 67 LMIVAGRVVMKMLPVLQRIWQQMHEPKWCISMGACASTGGVFD-TYAVVQGIDRFIPVDM 125 Query: 155 YVPGCPPTAEALIYGILLLQKKIRRVGNV 183 YVPGCPP E L I+ LQ KI+R G + Sbjct: 126 YVPGCPPRPEQLTQAIIDLQDKIQREGTI 154 >gi|300918548|ref|ZP_07135138.1| NADH dehydrogenase subunit B [Escherichia coli MS 115-1] gi|300414283|gb|EFJ97593.1| NADH dehydrogenase subunit B [Escherichia coli MS 115-1] Length = 220 Score = 150 bits (380), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 71/144 (49%), Positives = 100/144 (69%), Gaps = 2/144 (1%) Query: 35 HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQS 93 +K + ++ +V W R S+ FGL+CC VEM+ + +D+ RFG RASPRQ+ Sbjct: 34 NKNVFMGKLNDMVNWGRKNSIWPYNFGLSCCYVEMVTSFTAVHDVARFGAEVLRASPRQA 93 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD 153 D+M+VAGT KMA ++R+YDQM EP++VISMG+CAN GG Y YSVV+G D+ +PVD Sbjct: 94 DLMVVAGTCFTKMAPVIQRLYDQMLEPKWVISMGACANSGGMYDI-YSVVQGVDKFIPVD 152 Query: 154 IYVPGCPPTAEALIYGILLLQKKI 177 +Y+PGCPP EA + ++LLQ+ I Sbjct: 153 VYIPGCPPRPEAYMQALMLLQESI 176 >gi|301026957|ref|ZP_07190350.1| NADH dehydrogenase subunit B [Escherichia coli MS 196-1] gi|299879504|gb|EFI87715.1| NADH dehydrogenase subunit B [Escherichia coli MS 196-1] Length = 220 Score = 150 bits (380), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 71/144 (49%), Positives = 100/144 (69%), Gaps = 2/144 (1%) Query: 35 HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQS 93 +K + ++ +V W R S+ FGL+CC VEM+ + +D+ RFG RASPRQ+ Sbjct: 34 NKNVFMGKLNDMVNWGRKNSIWPYNFGLSCCYVEMVTSFTAVHDVARFGAEVLRASPRQA 93 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD 153 D+M+VAGT KMA ++R+YDQM EP++VISMG+CAN GG Y YSVV+G D+ +PVD Sbjct: 94 DLMVVAGTCFTKMAPVIQRLYDQMLEPKWVISMGACANSGGMYDI-YSVVQGVDKFIPVD 152 Query: 154 IYVPGCPPTAEALIYGILLLQKKI 177 +Y+PGCPP EA + ++LLQ+ I Sbjct: 153 VYIPGCPPRPEAYMQALMLLQESI 176 >gi|23092541|gb|AAN08352.1| NADH dehydrogenase I subunit B [Photorhabdus temperata subsp. temperata] Length = 224 Score = 150 bits (380), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 74/142 (52%), Positives = 97/142 (68%), Gaps = 2/142 (1%) Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95 G L ++ LV W R SL FGL+CC VEM + +D+ RFG RASPRQ+D Sbjct: 40 GKLEHALHDLVNWGRKNSLWPYNFGLSCCYVEMATSFTAVHDVARFGAEVLRASPRQADF 99 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155 M+VAGT KMA ++R+YDQM EP++VISMG+CAN GG Y YSVV+G D+ +PVD+Y Sbjct: 100 MVVAGTCFTKMAPVIQRLYDQMLEPKWVISMGACANSGGMYDI-YSVVQGVDKFIPVDVY 158 Query: 156 VPGCPPTAEALIYGILLLQKKI 177 +PGCPP EA + ++LLQ+ I Sbjct: 159 IPGCPPRPEAYMQALMLLQESI 180 >gi|290489748|gb|ADD31258.1| NADH-plastoquinone oxidoreductase subunit K protein [Trochodendron aralioides] Length = 285 Score = 150 bits (380), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 67/147 (45%), Positives = 100/147 (68%), Gaps = 1/147 (0%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93 T + T+ + L W+R SL + +G +CC +E R+D +R+G PR+SPRQ+ Sbjct: 73 TQNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 132 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPV 152 D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++PV Sbjct: 133 DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 192 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179 +Y+PGCPP EA++ I L+KK+ R Sbjct: 193 HVYLPGCPPKPEAVMDAITKLRKKVSR 219 >gi|310768164|gb|ADP13114.1| NADH dehydrogenase subunit B [Erwinia sp. Ejp617] Length = 224 Score = 150 bits (380), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 74/142 (52%), Positives = 97/142 (68%), Gaps = 2/142 (1%) Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95 G L ++ +V W R SL FGL+CC VEM + +D+ RFG RASPRQ+D Sbjct: 40 GKLEHALHDMVNWGRKNSLWPFNFGLSCCYVEMTTSFTAVHDVARFGSEVIRASPRQADF 99 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155 M+VAGT KMA ++R+YDQM EP++VISMG+CAN GG Y YSVV+G D+ +PVD+Y Sbjct: 100 MVVAGTCFTKMAPVVQRLYDQMLEPKWVISMGACANSGGMYDI-YSVVQGVDKFLPVDVY 158 Query: 156 VPGCPPTAEALIYGILLLQKKI 177 +PGCPP EA + +LLLQ+ I Sbjct: 159 IPGCPPRPEAYMQALLLLQESI 180 >gi|213022740|ref|ZP_03337187.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 184 Score = 150 bits (380), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 75/160 (46%), Positives = 105/160 (65%), Gaps = 2/160 (1%) Query: 19 LEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78 L+K + + E+ K T+ +V W R S+ FGL+CC VEM+ + +D Sbjct: 19 LQKQEIVTDPLEQEVKQKRVHGTNCMTVVNWGRKNSIWPYNFGLSCCYVEMVTSFTAVHD 78 Query: 79 LERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137 + RFG RASPRQ+D+M+VAGT KMA ++R+YDQM EP++VISMG+CAN GG Y Sbjct: 79 VARFGAEVLRASPRQADLMVVAGTCFTKMAPVIQRLYDQMLEPKWVISMGACANSGGMYD 138 Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 YSVV+G D+ +PVD+Y+PGCPP EA + ++LLQ+ I Sbjct: 139 I-YSVVQGVDKFIPVDVYIPGCPPRPEAYMQALMLLQESI 177 >gi|308232348|ref|ZP_07415800.2| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis SUMu001] gi|308370160|ref|ZP_07420526.2| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis SUMu002] gi|308371244|ref|ZP_07424331.2| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis SUMu003] gi|308372436|ref|ZP_07428696.2| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis SUMu004] gi|308374785|ref|ZP_07437401.2| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis SUMu006] gi|308376000|ref|ZP_07445800.2| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis SUMu007] gi|308377233|ref|ZP_07441611.2| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis SUMu008] gi|308378201|ref|ZP_07668686.1| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis SUMu009] gi|308380583|ref|ZP_07490460.2| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis SUMu011] gi|308214175|gb|EFO73574.1| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis SUMu001] gi|308324950|gb|EFP13801.1| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis SUMu002] gi|308329366|gb|EFP18217.1| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis SUMu003] gi|308333195|gb|EFP22046.1| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis SUMu004] gi|308340526|gb|EFP29377.1| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis SUMu006] gi|308344466|gb|EFP33317.1| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis SUMu007] gi|308348462|gb|EFP37313.1| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis SUMu008] gi|308353092|gb|EFP41943.1| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis SUMu009] gi|308361019|gb|EFP49870.1| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis SUMu011] Length = 157 Score = 150 bits (380), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 69/127 (54%), Positives = 99/127 (77%), Gaps = 3/127 (2%) Query: 56 MW-MTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRV 113 MW TFGLACCA+EMM + PR+D+ RFG A+PRQ+D+MIVAG ++ KMA LR++ Sbjct: 1 MWPATFGLACCAIEMMATAGPRFDIARFGMERFSATPRQADLMIVAGRVSQKMAPVLRQI 60 Query: 114 YDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLL 173 YDQM EP++V++MG CA+ GG ++ +Y++V+G D +VPVDIY+PGCPP E L++ IL L Sbjct: 61 YDQMAEPKWVLAMGVCASSGGMFN-NYAIVQGVDHVVPVDIYLPGCPPRPEMLLHAILKL 119 Query: 174 QKKIRRV 180 +KI+++ Sbjct: 120 HEKIQQM 126 >gi|118576844|ref|YP_876587.1| NADH-ubiquinone oxidoreductase, subunit B [Cenarchaeum symbiosum A] gi|118195365|gb|ABK78283.1| NADH-ubiquinone oxidoreductase, subunit B [Cenarchaeum symbiosum A] Length = 160 Score = 150 bits (380), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 74/135 (54%), Positives = 95/135 (70%), Gaps = 1/135 (0%) Query: 47 VTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR-ASPRQSDVMIVAGTLTNK 105 + W R SL + ACC+VE AS P+YD+ERFG S RQ D+++V GT+T K Sbjct: 20 INWGRIWSLWPVHIETACCSVEFGAASGPKYDVERFGIIEAFGSLRQCDLIVVQGTITRK 79 Query: 106 MASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEA 165 MA LR VYDQMPEP+YVI+MG+CA GG Y SY+V+ G D ++PVD+YVPGCPP E Sbjct: 80 MAPRLRLVYDQMPEPKYVIAMGACAITGGLYFDSYNVLPGIDGVLPVDVYVPGCPPRPET 139 Query: 166 LIYGILLLQKKIRRV 180 LI G +LLQ+KI+R+ Sbjct: 140 LIQGCMLLQEKIKRM 154 >gi|37526976|ref|NP_930320.1| NADH dehydrogenase subunit B [Photorhabdus luminescens subsp. laumondii TTO1] gi|81572443|sp|Q7N2I8|NUOB_PHOLL RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|36786409|emb|CAE15462.1| NADH dehydrogenase I chain B (NADH-ubiquinone oxidoreductase chain 2) (NUO2) [Photorhabdus luminescens subsp. laumondii TTO1] Length = 224 Score = 150 bits (380), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 74/142 (52%), Positives = 97/142 (68%), Gaps = 2/142 (1%) Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95 G L ++ +V W R SL FGL+CC VEM + +D+ RFG RASPRQ+D Sbjct: 40 GKLEHALHDMVNWGRKNSLWPYNFGLSCCYVEMATSFTAVHDVARFGAEVLRASPRQADF 99 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155 M+VAGT KMA ++R+YDQM EP++VISMG+CAN GG Y YSVV+G D+ +PVD+Y Sbjct: 100 MVVAGTCFTKMAPVIQRLYDQMLEPKWVISMGACANSGGMYDI-YSVVQGVDKFIPVDVY 158 Query: 156 VPGCPPTAEALIYGILLLQKKI 177 +PGCPP EA + +LLLQ+ I Sbjct: 159 IPGCPPRPEAYMQALLLLQESI 180 >gi|238753753|ref|ZP_04615114.1| NADH-quinone oxidoreductase subunit B [Yersinia ruckeri ATCC 29473] gi|238707989|gb|EEQ00346.1| NADH-quinone oxidoreductase subunit B [Yersinia ruckeri ATCC 29473] Length = 225 Score = 150 bits (379), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 77/168 (45%), Positives = 108/168 (64%), Gaps = 6/168 (3%) Query: 11 ISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMM 70 + Q + S + ++ D R + G L ++ +V W R SL FGL+CC VEM+ Sbjct: 19 LQSQETISGDPLEQDIHRS----VYMGKLEHAMHDMVNWGRKNSLWPYNFGLSCCYVEMV 74 Query: 71 QASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSC 129 + +D+ RFG RASPRQ+D M+VAGT KMA ++R+Y+QM EP++VISMG+C Sbjct: 75 TSFTAVHDVARFGAEVLRASPRQADFMVVAGTCFTKMAPVIQRLYEQMLEPKWVISMGAC 134 Query: 130 ANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 AN GG Y YSVV+G D+ +PVD+Y+PGCPP EA + +LLLQ+ I Sbjct: 135 ANSGGMYDI-YSVVQGVDKFLPVDVYIPGCPPRPEAYMQALLLLQESI 181 >gi|300717650|ref|YP_003742453.1| NADH dehydrogenase I chain B [Erwinia billingiae Eb661] gi|299063486|emb|CAX60606.1| NADH dehydrogenase I chain B [Erwinia billingiae Eb661] Length = 224 Score = 150 bits (379), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 74/142 (52%), Positives = 97/142 (68%), Gaps = 2/142 (1%) Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95 G L ++ +V W R SL FGL+CC VEM + +D+ RFG RASPRQ+D Sbjct: 40 GKLEHAMHDMVNWGRKNSLWPFNFGLSCCYVEMTTSFTSVHDVARFGSEVIRASPRQADF 99 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155 M+VAGT KMA ++R+YDQM EP++VISMG+CAN GG Y YSVV+G D+ +PVD+Y Sbjct: 100 MVVAGTCFTKMAPVVQRLYDQMLEPKWVISMGACANSGGMYDI-YSVVQGVDKFLPVDVY 158 Query: 156 VPGCPPTAEALIYGILLLQKKI 177 +PGCPP EA + +LLLQ+ I Sbjct: 159 IPGCPPRPEAYMQALLLLQESI 180 >gi|188533348|ref|YP_001907145.1| NADH dehydrogenase subunit B [Erwinia tasmaniensis Et1/99] gi|238065142|sp|B2VIV4|NUOB_ERWT9 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|188028390|emb|CAO96251.1| NADH dehydrogenase I chain B [Erwinia tasmaniensis Et1/99] Length = 224 Score = 150 bits (379), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 74/142 (52%), Positives = 97/142 (68%), Gaps = 2/142 (1%) Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95 G L ++ +V W R SL FGL+CC VEM + +D+ RFG RASPRQ+D Sbjct: 40 GKLEHALHDMVNWGRKNSLWPFNFGLSCCYVEMTTSFTAVHDVARFGSEVIRASPRQADF 99 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155 M+VAGT KMA ++R+YDQM EP++VISMG+CAN GG Y YSVV+G D+ +PVD+Y Sbjct: 100 MVVAGTCFTKMAPVVQRLYDQMLEPKWVISMGACANSGGMYDI-YSVVQGVDKFLPVDVY 158 Query: 156 VPGCPPTAEALIYGILLLQKKI 177 +PGCPP EA + +LLLQ+ I Sbjct: 159 IPGCPPRPEAYMQALLLLQESI 180 >gi|71892265|ref|YP_277999.1| NADH dehydrogenase subunit B [Candidatus Blochmannia pennsylvanicus str. BPEN] gi|123640866|sp|Q492H7|NUOB_BLOPB RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|71796371|gb|AAZ41122.1| NADH dehydrogenase I chain B, binds FeS cluster N2 [Candidatus Blochmannia pennsylvanicus str. BPEN] Length = 236 Score = 150 bits (379), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 75/142 (52%), Positives = 97/142 (68%), Gaps = 2/142 (1%) Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95 G L + ++V W R SL FGL+CC VEM A +D+ RFG RASPRQ+D Sbjct: 41 GKLSAFLHKIVNWGRGNSLWPYNFGLSCCYVEMTTAFTAIHDVARFGSEVLRASPRQADF 100 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155 M++AGT KM ++R+YDQM EP++VISMG+CAN GG Y YSVV+G D+ +PVD+Y Sbjct: 101 MVIAGTPFLKMVPVIQRLYDQMLEPKWVISMGACANSGGMYDI-YSVVQGVDKFLPVDLY 159 Query: 156 VPGCPPTAEALIYGILLLQKKI 177 +PGCPP EA I G+LLL+K I Sbjct: 160 IPGCPPRPEAYIQGLLLLKKSI 181 >gi|227488707|ref|ZP_03919023.1| NADH dehydrogenase subunit B [Corynebacterium glucuronolyticum ATCC 51867] gi|227542294|ref|ZP_03972343.1| NADH dehydrogenase subunit B [Corynebacterium glucuronolyticum ATCC 51866] gi|227091368|gb|EEI26680.1| NADH dehydrogenase subunit B [Corynebacterium glucuronolyticum ATCC 51867] gi|227181894|gb|EEI62866.1| NADH dehydrogenase subunit B [Corynebacterium glucuronolyticum ATCC 51866] Length = 189 Score = 150 bits (379), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 74/148 (50%), Positives = 103/148 (69%), Gaps = 2/148 (1%) Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95 G+L T+ + L R S+ TFGLACCA EMM + PRYD R+G RASPRQ+D+ Sbjct: 10 GYLTTTTEWLFGLTREWSVWPATFGLACCAFEMMSYAGPRYDSSRWGQEVFRASPRQADL 69 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155 +IV+G ++ KMA +RRVYDQMP+P++VI+MG+C++ GG ++ +Y++V+G D IVPVD+Y Sbjct: 70 LIVSGRVSQKMAPIMRRVYDQMPDPKWVIAMGACSSSGGIFN-NYAIVQGADHIVPVDVY 128 Query: 156 VPGCPPTAEALIYGILLLQKKIRRVGNV 183 VPGCPP E LI L+ I + V Sbjct: 129 VPGCPPRPEMLIDASFKLRAIIAKQTKV 156 >gi|15597834|ref|NP_251328.1| NADH dehydrogenase subunit B [Pseudomonas aeruginosa PAO1] gi|107102158|ref|ZP_01366076.1| hypothetical protein PaerPA_01003208 [Pseudomonas aeruginosa PACS2] gi|116050625|ref|YP_790556.1| NADH dehydrogenase subunit B [Pseudomonas aeruginosa UCBPP-PA14] gi|218891201|ref|YP_002440067.1| NADH dehydrogenase subunit B [Pseudomonas aeruginosa LESB58] gi|254235623|ref|ZP_04928946.1| NADH dehydrogenase I chain B [Pseudomonas aeruginosa C3719] gi|254241070|ref|ZP_04934392.1| NADH dehydrogenase I chain B [Pseudomonas aeruginosa 2192] gi|296388901|ref|ZP_06878376.1| NADH dehydrogenase subunit B [Pseudomonas aeruginosa PAb1] gi|313107676|ref|ZP_07793858.1| NADH dehydrogenase I chain B [Pseudomonas aeruginosa 39016] gi|81622300|sp|Q9I0K0|NUOB_PSEAE RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|122259748|sp|Q02ND0|NUOB_PSEAB RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|238065194|sp|B7VAR4|NUOB_PSEA8 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|9948706|gb|AAG06026.1|AE004692_5 NADH dehydrogenase I chain B [Pseudomonas aeruginosa PAO1] gi|115585846|gb|ABJ11861.1| NADH dehydrogenase I chain B [Pseudomonas aeruginosa UCBPP-PA14] gi|126167554|gb|EAZ53065.1| NADH dehydrogenase I chain B [Pseudomonas aeruginosa C3719] gi|126194448|gb|EAZ58511.1| NADH dehydrogenase I chain B [Pseudomonas aeruginosa 2192] gi|218771426|emb|CAW27193.1| NADH dehydrogenase I chain B [Pseudomonas aeruginosa LESB58] gi|310880360|gb|EFQ38954.1| NADH dehydrogenase I chain B [Pseudomonas aeruginosa 39016] Length = 225 Score = 150 bits (379), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 74/142 (52%), Positives = 97/142 (68%), Gaps = 2/142 (1%) Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95 G L ++ V W R SL FGL+CC VEM A +D+ RFG RASPRQ+D Sbjct: 41 GKLEDVLNSTVNWGRKNSLWPYNFGLSCCYVEMTTAFTAPHDIARFGAEVIRASPRQADF 100 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155 M++AGT KMA ++R+Y+QM EP++VISMGSCAN GG Y YSVV+G D+ +PVD+Y Sbjct: 101 MVIAGTCFIKMAPVIQRLYEQMLEPKWVISMGSCANSGGMYDI-YSVVQGVDKFLPVDVY 159 Query: 156 VPGCPPTAEALIYGILLLQKKI 177 +PGCPP EA + G++LLQ+ I Sbjct: 160 IPGCPPRPEAFLQGLMLLQESI 181 >gi|330810464|ref|YP_004354926.1| NADH-quinone oxidoreductase subunit B [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|9719438|gb|AAF97798.1|AF281148_2 NADH dehydrogenase I subunit B [Pseudomonas fluorescens] gi|327378572|gb|AEA69922.1| NADH-quinone oxidoreductase subunit B [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 224 Score = 150 bits (379), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 75/142 (52%), Positives = 97/142 (68%), Gaps = 2/142 (1%) Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95 G L ++ V W R SL FGL+CC VEM A +D+ RFG RASPRQ+D Sbjct: 40 GKLEDVLNSTVNWGRKNSLWPYNFGLSCCYVEMTTAFTAPHDIARFGAEVIRASPRQADF 99 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155 M++AGT KMA ++R+Y+QM EP++VISMGSCAN GG Y YSVV+G D+ +PVD+Y Sbjct: 100 MVIAGTCFIKMAPIIQRLYEQMLEPKWVISMGSCANSGGMYDI-YSVVQGVDKFLPVDVY 158 Query: 156 VPGCPPTAEALIYGILLLQKKI 177 VPGCPP EA + G++LLQ+ I Sbjct: 159 VPGCPPRPEAFLQGLMLLQESI 180 >gi|260551032|ref|ZP_05825237.1| NADH:ubiquinone oxidoreductase 20 kDa subunit [Acinetobacter sp. RUH2624] gi|262280145|ref|ZP_06057930.1| NADH-quinone oxidoreductase subunit C/D [Acinetobacter calcoaceticus RUH2202] gi|299771418|ref|YP_003733444.1| NADH dehydrogenase subunit B [Acinetobacter sp. DR1] gi|260405980|gb|EEW99467.1| NADH:ubiquinone oxidoreductase 20 kDa subunit [Acinetobacter sp. RUH2624] gi|262260496|gb|EEY79229.1| NADH-quinone oxidoreductase subunit C/D [Acinetobacter calcoaceticus RUH2202] gi|298701506|gb|ADI92071.1| NADH dehydrogenase subunit B [Acinetobacter sp. DR1] Length = 225 Score = 150 bits (379), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 78/154 (50%), Positives = 100/154 (64%), Gaps = 5/154 (3%) Query: 29 ISSEITHKGFLVTSVDQL---VTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA 85 + E+ F+ D L V W R SL FG +CC VE +DL RFG Sbjct: 27 LEEEVNKNVFMTRLEDVLHTAVNWGRKNSLWPFNFGTSCCYVEYATTLTGVHDLSRFGAE 86 Query: 86 P-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR 144 RASPRQ+D+MIVAGT KMA ++R+Y+QM EP++VISMG+CAN GG Y YSVV+ Sbjct: 87 VIRASPRQADLMIVAGTCFVKMAPVIQRLYEQMLEPKWVISMGACANSGGMYDI-YSVVQ 145 Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 G D+I+PVD+YVPGCPP EALI ++LLQ +I+ Sbjct: 146 GVDKIIPVDVYVPGCPPRPEALIQALMLLQDQIQ 179 >gi|293609138|ref|ZP_06691441.1| NADH-quinone oxidoreductase [Acinetobacter sp. SH024] gi|292829711|gb|EFF88073.1| NADH-quinone oxidoreductase [Acinetobacter sp. SH024] gi|325121082|gb|ADY80605.1| NADH dehydrogenase I chain B [Acinetobacter calcoaceticus PHEA-2] Length = 225 Score = 150 bits (379), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 78/154 (50%), Positives = 100/154 (64%), Gaps = 5/154 (3%) Query: 29 ISSEITHKGFLVTSVDQL---VTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA 85 + E+ F+ D L V W R SL FG +CC VE +DL RFG Sbjct: 27 LEEEVNKNVFMTRLEDVLHTAVNWGRKNSLWPFNFGTSCCYVEYATTLTGVHDLSRFGAE 86 Query: 86 P-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR 144 RASPRQ+D+MIVAGT KMA ++R+Y+QM EP++VISMG+CAN GG Y YSVV+ Sbjct: 87 VIRASPRQADLMIVAGTCFVKMAPVIQRLYEQMLEPKWVISMGACANSGGMYDI-YSVVQ 145 Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 G D+I+PVD+YVPGCPP EALI ++LLQ +I+ Sbjct: 146 GVDKIIPVDVYVPGCPPRPEALIQALMLLQDQIQ 179 >gi|326567954|gb|EGE18051.1| NADH dehydrogenase subunit B [Moraxella catarrhalis BC1] gi|326577449|gb|EGE27333.1| NADH dehydrogenase subunit B [Moraxella catarrhalis O35E] Length = 223 Score = 150 bits (379), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 78/144 (54%), Positives = 95/144 (65%), Gaps = 2/144 (1%) Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95 G L L W R SL FG +CC VE +DL RFG RASPRQ+DV Sbjct: 38 GRLSDLTHNLANWGRKNSLWPFNFGTSCCYVEYATTLTGVHDLSRFGAEVIRASPRQADV 97 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155 MIVAGT KMA + R+Y+QM EP++VISMG+CAN GG Y YSVV+G D+I+PVD+Y Sbjct: 98 MIVAGTCFVKMAPVILRLYEQMLEPKWVISMGACANSGGMYDI-YSVVQGVDKILPVDVY 156 Query: 156 VPGCPPTAEALIYGILLLQKKIRR 179 VPGCPP EALI I+LLQ+ I++ Sbjct: 157 VPGCPPRPEALIQAIMLLQESIQK 180 >gi|283786355|ref|YP_003366220.1| NADH-quinone oxidoreductase subunit B [Citrobacter rodentium ICC168] gi|282949809|emb|CBG89432.1| NADH-quinone oxidoreductase subunit B [Citrobacter rodentium ICC168] Length = 220 Score = 150 bits (379), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 75/160 (46%), Positives = 105/160 (65%), Gaps = 3/160 (1%) Query: 19 LEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78 L+K + + E+ +K + + LV W R S+ FGL+CC VEM+ + +D Sbjct: 19 LQKQEIVTDPLEQEV-NKNVFMGKLHDLVNWGRKNSIWPYNFGLSCCYVEMVTSFTAVHD 77 Query: 79 LERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137 + RFG RASPRQ+D+M+VAGT KMA ++R+YDQM EP++VISMG+CAN GG Y Sbjct: 78 VARFGAEVLRASPRQADLMVVAGTCFTKMAPVIQRLYDQMLEPKWVISMGACANSGGMYD 137 Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 YSVV+G D+ +PVD+Y+PGCPP EA + ++LLQ I Sbjct: 138 I-YSVVQGVDKFIPVDVYIPGCPPRPEAYMQALMLLQDSI 176 >gi|397899|emb|CAA48361.1| NADH dehydrogenase I, subunit nuoB [Escherichia coli] Length = 220 Score = 150 bits (378), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 74/160 (46%), Positives = 106/160 (66%), Gaps = 3/160 (1%) Query: 19 LEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78 L+K + + E+ +K + ++ +V W R S+ FGL+CC VEM+ +D Sbjct: 19 LQKQEIVTDPLEQEV-NKNVFMGKLNDMVNWGRKNSIWPYNFGLSCCYVEMVTLFTAVHD 77 Query: 79 LERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137 + RFG RASPRQ+D+M+VAGT KMA ++R+YDQM EP++VISMG+CAN GG Y Sbjct: 78 VARFGAEVLRASPRQADLMVVAGTCFTKMAPVIQRLYDQMLEPKWVISMGACANSGGMYD 137 Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 YSVV+G D+ +PVD+Y+PGCPP EA + ++LLQ+ I Sbjct: 138 I-YSVVQGVDKFIPVDVYIPGCPPRPEAYMQALMLLQESI 176 >gi|169634180|ref|YP_001707916.1| NADH dehydrogenase subunit B [Acinetobacter baumannii SDF] gi|169797057|ref|YP_001714850.1| NADH dehydrogenase subunit B [Acinetobacter baumannii AYE] gi|184157030|ref|YP_001845369.1| NADH dehydrogenase subunit B [Acinetobacter baumannii ACICU] gi|213156537|ref|YP_002318198.1| NADH dehydrogenase I chain B [Acinetobacter baumannii AB0057] gi|215484518|ref|YP_002326753.1| NAD(P)H-quinone oxidoreductase subunit K [Acinetobacter baumannii AB307-0294] gi|239501293|ref|ZP_04660603.1| NADH dehydrogenase subunit B [Acinetobacter baumannii AB900] gi|260555651|ref|ZP_05827871.1| NADH:ubiquinone oxidoreductase 20 kDa subunit [Acinetobacter baumannii ATCC 19606] gi|301347793|ref|ZP_07228534.1| NADH dehydrogenase subunit B [Acinetobacter baumannii AB056] gi|301510628|ref|ZP_07235865.1| NADH dehydrogenase subunit B [Acinetobacter baumannii AB058] gi|301595913|ref|ZP_07240921.1| NADH dehydrogenase subunit B [Acinetobacter baumannii AB059] gi|332852146|ref|ZP_08433973.1| NADH dehydrogenase I subunit B [Acinetobacter baumannii 6013150] gi|332867545|ref|ZP_08437698.1| NADH dehydrogenase I subunit B [Acinetobacter baumannii 6013113] gi|332872605|ref|ZP_08440573.1| NADH dehydrogenase I subunit B [Acinetobacter baumannii 6014059] gi|238065045|sp|B7GZC0|NUOB_ACIB3 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|238065046|sp|B7I740|NUOB_ACIB5 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|238065047|sp|B2HU42|NUOB_ACIBC RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|238065048|sp|B0VU55|NUOB_ACIBS RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|238065065|sp|B0V7U7|NUOB_ACIBY RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|238065077|sp|A3M2P9|NUOB_ACIBT RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|169149984|emb|CAM87878.1| NADH dehydrogenase I chain B [Acinetobacter baumannii AYE] gi|169152972|emb|CAP02018.1| NADH dehydrogenase I chain B [Acinetobacter baumannii] gi|183208624|gb|ACC56022.1| NADH:ubiquinone oxidoreductase 20 kD subunit [Acinetobacter baumannii ACICU] gi|193076535|gb|ABO11193.2| NADH dehydrogenase I chain B [Acinetobacter baumannii ATCC 17978] gi|213055697|gb|ACJ40599.1| NADH dehydrogenase I chain B [Acinetobacter baumannii AB0057] gi|213987919|gb|ACJ58218.1| NAD(P)H-quinone oxidoreductase subunit K [Acinetobacter baumannii AB307-0294] gi|260410562|gb|EEX03860.1| NADH:ubiquinone oxidoreductase 20 kDa subunit [Acinetobacter baumannii ATCC 19606] gi|322506929|gb|ADX02383.1| nuoB [Acinetobacter baumannii 1656-2] gi|323516796|gb|ADX91177.1| NADH dehydrogenase subunit B [Acinetobacter baumannii TCDC-AB0715] gi|332729518|gb|EGJ60857.1| NADH dehydrogenase I subunit B [Acinetobacter baumannii 6013150] gi|332733962|gb|EGJ65107.1| NADH dehydrogenase I subunit B [Acinetobacter baumannii 6013113] gi|332739134|gb|EGJ69993.1| NADH dehydrogenase I subunit B [Acinetobacter baumannii 6014059] Length = 225 Score = 150 bits (378), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 78/154 (50%), Positives = 100/154 (64%), Gaps = 5/154 (3%) Query: 29 ISSEITHKGFLVTSVDQL---VTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA 85 + E+ F+ D L V W R SL FG +CC VE +DL RFG Sbjct: 27 LEEEVNKNVFMTRLEDVLHTAVNWGRKNSLWPFNFGTSCCYVEYATTLTGVHDLSRFGAE 86 Query: 86 P-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR 144 RASPRQ+D+MIVAGT KMA ++R+Y+QM EP++VISMG+CAN GG Y YSVV+ Sbjct: 87 VIRASPRQADLMIVAGTCFVKMAPVIQRLYEQMLEPKWVISMGACANSGGMYDI-YSVVQ 145 Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 G D+I+PVD+YVPGCPP EALI ++LLQ +I+ Sbjct: 146 GVDKIIPVDVYVPGCPPRPEALIQALMLLQDQIQ 179 >gi|296112931|ref|YP_003626869.1| NADH-quinone oxidoreductase subunit B [Moraxella catarrhalis RH4] gi|295920625|gb|ADG60976.1| NADH-quinone oxidoreductase subunit B [Moraxella catarrhalis RH4] gi|326561154|gb|EGE11519.1| NADH dehydrogenase subunit B [Moraxella catarrhalis 7169] Length = 223 Score = 150 bits (378), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 78/144 (54%), Positives = 95/144 (65%), Gaps = 2/144 (1%) Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95 G L L W R SL FG +CC VE +DL RFG RASPRQ+DV Sbjct: 38 GRLSDLTHNLANWGRKNSLWPFNFGTSCCYVEYATTLTGVHDLSRFGAEVIRASPRQADV 97 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155 MIVAGT KMA + R+Y+QM EP++VISMG+CAN GG Y YSVV+G D+I+PVD+Y Sbjct: 98 MIVAGTCFVKMAPVILRLYEQMLEPKWVISMGACANSGGMYDI-YSVVQGVDKILPVDVY 156 Query: 156 VPGCPPTAEALIYGILLLQKKIRR 179 VPGCPP EALI I+LLQ+ I++ Sbjct: 157 VPGCPPRPEALIQAIMLLQESIQK 180 >gi|152988699|ref|YP_001347933.1| NADH dehydrogenase subunit B [Pseudomonas aeruginosa PA7] gi|238065193|sp|A6V4E8|NUOB_PSEA7 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|150963857|gb|ABR85882.1| NADH dehydrogenase I chain B [Pseudomonas aeruginosa PA7] Length = 225 Score = 150 bits (378), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 74/142 (52%), Positives = 97/142 (68%), Gaps = 2/142 (1%) Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95 G L ++ V W R SL FGL+CC VEM A +D+ RFG RASPRQ+D Sbjct: 41 GKLEDVLNSTVNWGRKNSLWPYNFGLSCCYVEMTTAFTAPHDIARFGAEVIRASPRQADF 100 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155 M++AGT KMA ++R+Y+QM EP++VISMGSCAN GG Y YSVV+G D+ +PVD+Y Sbjct: 101 MVIAGTCFIKMAPVIQRLYEQMLEPKWVISMGSCANSGGMYDI-YSVVQGVDKFLPVDVY 159 Query: 156 VPGCPPTAEALIYGILLLQKKI 177 +PGCPP EA + G++LLQ+ I Sbjct: 160 IPGCPPRPEAFLQGLMLLQESI 181 >gi|297570897|ref|YP_003696671.1| NADH-quinone oxidoreductase subunit beta [Arcanobacterium haemolyticum DSM 20595] gi|296931244|gb|ADH92052.1| NADH-quinone oxidoreductase, B subunit [Arcanobacterium haemolyticum DSM 20595] Length = 185 Score = 150 bits (378), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 71/150 (47%), Positives = 102/150 (68%), Gaps = 2/150 (1%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RAS 89 E G +T+V+ L WA+ S +T GLACCA+EMM R+D R G RAS Sbjct: 4 EEKVPAGIGLTTVEALAGWAQQRSPWPVTMGLACCAIEMMSFGATRFDASRIGMEVFRAS 63 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PR +D+MIV+G +++KMA +R +YDQMP+P++VISMG+CA+ GG ++ +Y++V+G D I Sbjct: 64 PRHADIMIVSGRVSHKMAPVVRNIYDQMPDPKWVISMGACASSGGVFN-NYAIVQGIDHI 122 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRR 179 VPVDIY+PGCPP E LI + L+ + + Sbjct: 123 VPVDIYLPGCPPRPEMLINAVFELRNNVMK 152 >gi|37521948|ref|NP_925325.1| NADH dehydrogenase subunit B [Gloeobacter violaceus PCC 7421] gi|81709608|sp|Q7NI05|NDHK2_GLOVI RecName: Full=NAD(P)H-quinone oxidoreductase subunit K 2; AltName: Full=NAD(P)H dehydrogenase I subunit K 2; AltName: Full=NDH-1 subunit K 2; Short=NDH-K 2 gi|35212947|dbj|BAC90320.1| NADH dehydrogenase subunit K [Gloeobacter violaceus PCC 7421] Length = 249 Score = 150 bits (378), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 69/150 (46%), Positives = 104/150 (69%), Gaps = 2/150 (1%) Query: 29 ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88 ++SE+++ ++T+++ L WAR S+ + +G ACC +E R+D +RFG PRA Sbjct: 20 VTSELSN-NVVLTTLNDLYNWARLSSVWPLMYGTACCFIEFAGLIGSRFDFDRFGLVPRA 78 Query: 89 SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCD 147 SPRQ+D++I AGT+T K A AL +Y QMPEP+YVI+MG+C GG + S + VRG D Sbjct: 79 SPRQADLIITAGTITMKFAPALVTLYQQMPEPKYVIAMGACTITGGMFSTDSPTTVRGVD 138 Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 +++PVD+Y+PGCPP EA+ I+ L+KK+ Sbjct: 139 KLIPVDVYIPGCPPRPEAIFDAIIKLRKKM 168 >gi|298530619|ref|ZP_07018021.1| NADH-quinone oxidoreductase, B subunit [Desulfonatronospira thiodismutans ASO3-1] gi|298509993|gb|EFI33897.1| NADH-quinone oxidoreductase, B subunit [Desulfonatronospira thiodismutans ASO3-1] Length = 182 Score = 150 bits (378), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 80/168 (47%), Positives = 105/168 (62%), Gaps = 8/168 (4%) Query: 13 GQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQA 72 Q + +L AD S I H V +++ R SL MTFGLACCA+EMM Sbjct: 2 AQENQTLTHAYADTSYDEPIIDH-----APVQKILNICRAMSLWPMTFGLACCAIEMMGF 56 Query: 73 SMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCAN 131 M R+D RFG R SPRQSD+MIVAGT+ K++ + +Y+QMP P++VI+MG+CA Sbjct: 57 GMARFDSARFGAEVFRPSPRQSDLMIVAGTVNKKLSPLVTMLYEQMPSPKWVIAMGNCAI 116 Query: 132 GGGYYHY--SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 GG + Y Y +V G DRI+PVD+YVPGCPP E L+ G+ +QKKI Sbjct: 117 SGGPFVYKNQYGIVEGVDRIIPVDVYVPGCPPRPEGLLEGLFQVQKKI 164 >gi|157144782|ref|YP_001452101.1| NADH dehydrogenase subunit B [Citrobacter koseri ATCC BAA-895] gi|238055287|sp|A8ADV2|NUOB_CITK8 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|157081987|gb|ABV11665.1| hypothetical protein CKO_00509 [Citrobacter koseri ATCC BAA-895] Length = 224 Score = 150 bits (378), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 76/163 (46%), Positives = 107/163 (65%), Gaps = 5/163 (3%) Query: 19 LEKVDADFSRISSEIT---HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMP 75 L+K + + EI + G L ++ +V W R S+ FGL+CC VEM+ + Sbjct: 19 LQKQEIVTDPLEQEINKSVYMGKLEHALHDMVNWGRKNSIWPYNFGLSCCYVEMVTSFTA 78 Query: 76 RYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGG 134 +D+ RFG RASPRQ+D+M+VAGT KMA ++R+YDQM EP++VISMG+CAN GG Sbjct: 79 VHDVARFGAEVLRASPRQADLMVVAGTCFTKMAPVIQRLYDQMLEPKWVISMGACANSGG 138 Query: 135 YYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 Y YSVV+G D+ +PVD+Y+PGCPP EA + ++LLQ+ I Sbjct: 139 MYDI-YSVVQGVDKFIPVDVYIPGCPPRPEAYMQALMLLQESI 180 >gi|16761252|ref|NP_456869.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|16765654|ref|NP_461269.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|29141052|ref|NP_804394.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56412776|ref|YP_149851.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62180897|ref|YP_217314.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161502528|ref|YP_001569640.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|161612945|ref|YP_001586910.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167549674|ref|ZP_02343433.1| NADH-quinone oxidoreductase, B subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|167994675|ref|ZP_02575766.1| NADH-quinone oxidoreductase, B subunit [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168229696|ref|ZP_02654754.1| NADH-quinone oxidoreductase, B subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168237344|ref|ZP_02662402.1| NADH-quinone oxidoreductase, B subunit [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168242445|ref|ZP_02667377.1| NADH-quinone oxidoreductase, B subunit [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168261657|ref|ZP_02683630.1| NADH-quinone oxidoreductase, B subunit [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168465970|ref|ZP_02699840.1| NADH-quinone oxidoreductase, B subunit [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168817943|ref|ZP_02829943.1| NADH-quinone oxidoreductase, B subunit [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194443155|ref|YP_002041587.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194449154|ref|YP_002046380.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194472303|ref|ZP_03078287.1| NADH-quinone oxidoreductase, B subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194736744|ref|YP_002115396.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197249243|ref|YP_002147285.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197261696|ref|ZP_03161770.1| NADH-quinone oxidoreductase, B subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197361710|ref|YP_002141346.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|198241862|ref|YP_002216397.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200386648|ref|ZP_03213260.1| NADH-quinone oxidoreductase, B subunit [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204928974|ref|ZP_03220117.1| NADH-quinone oxidoreductase, B subunit [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205353442|ref|YP_002227243.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207857745|ref|YP_002244396.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|213052942|ref|ZP_03345820.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213420337|ref|ZP_03353403.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] gi|213427012|ref|ZP_03359762.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213581020|ref|ZP_03362846.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213610191|ref|ZP_03370017.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|213647303|ref|ZP_03377356.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|224583187|ref|YP_002636985.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|238912394|ref|ZP_04656231.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|289827447|ref|ZP_06546059.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|75482044|sp|Q57M29|NUOB_SALCH RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|81416296|sp|Q7CQ50|NUOB_SALTY RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|81599848|sp|Q5PN54|NUOB_SALPA RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|81628072|sp|Q8XGN7|NUOB_SALTI RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|238065204|sp|B5EZK8|NUOB_SALA4 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|238065205|sp|A9MJ98|NUOB_SALAR RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|238065206|sp|B5FPG8|NUOB_SALDC RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|238065207|sp|B5R308|NUOB_SALEP RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|238065208|sp|B5RCF2|NUOB_SALG2 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|238065209|sp|B4TBJ3|NUOB_SALHS RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|238065210|sp|B4SYZ8|NUOB_SALNS RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|238065211|sp|A9N581|NUOB_SALPB RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|238065212|sp|B5BCL9|NUOB_SALPK RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|238065213|sp|B4TPK9|NUOB_SALSV RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|254767798|sp|C0Q040|NUOB_SALPC RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|25299003|pir||AE0797 NADH2 dehydrogenase (ubiquinone) (EC 1.6.5.3) - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16420868|gb|AAL21228.1| NADH dehydrogenase I chain B [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|16503551|emb|CAD07559.1| NADH dehydrogenase I chain B [Salmonella enterica subsp. enterica serovar Typhi] gi|29136678|gb|AAO68243.1| NADH dehydrogenase I chain B [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56127033|gb|AAV76539.1| NADH dehydrogenase I chain B [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62128530|gb|AAX66233.1| NADH dehydrogenase I chain B [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|160863875|gb|ABX20498.1| hypothetical protein SARI_00572 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] gi|161362309|gb|ABX66077.1| hypothetical protein SPAB_00651 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194401818|gb|ACF62040.1| NADH-quinone oxidoreductase, B subunit [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194407458|gb|ACF67677.1| NADH-quinone oxidoreductase, B subunit [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194458667|gb|EDX47506.1| NADH-quinone oxidoreductase, B subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194712246|gb|ACF91467.1| NADH-quinone oxidoreductase, B subunit [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195631416|gb|EDX49976.1| NADH-quinone oxidoreductase, B subunit [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197093186|emb|CAR58630.1| NADH dehydrogenase I chain B [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197212946|gb|ACH50343.1| NADH-quinone oxidoreductase, B subunit [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197239951|gb|EDY22571.1| NADH-quinone oxidoreductase, B subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197289718|gb|EDY29081.1| NADH-quinone oxidoreductase, B subunit [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|197936378|gb|ACH73711.1| NADH-quinone oxidoreductase, B subunit [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199603746|gb|EDZ02291.1| NADH-quinone oxidoreductase, B subunit [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204321518|gb|EDZ06717.1| NADH-quinone oxidoreductase, B subunit [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205273223|emb|CAR38186.1| NADH dehydrogenase I chain B [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205325363|gb|EDZ13202.1| NADH-quinone oxidoreductase, B subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205327503|gb|EDZ14267.1| NADH-quinone oxidoreductase, B subunit [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205335598|gb|EDZ22362.1| NADH-quinone oxidoreductase, B subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205338322|gb|EDZ25086.1| NADH-quinone oxidoreductase, B subunit [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205345026|gb|EDZ31790.1| NADH-quinone oxidoreductase, B subunit [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205349478|gb|EDZ36109.1| NADH-quinone oxidoreductase, B subunit [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206709548|emb|CAR33893.1| NADH dehydrogenase I chain B [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224467714|gb|ACN45544.1| NADH dehydrogenase beta subunit [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|261247533|emb|CBG25360.1| NADH dehydrogenase I chain B [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267994422|gb|ACY89307.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301158885|emb|CBW18398.1| NADH dehydrogenase I chain B [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312913318|dbj|BAJ37292.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320086761|emb|CBY96533.1| NADH dehydrogenase I chain B [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321222972|gb|EFX48043.1| NADH-ubiquinone oxidoreductase chain B [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322617073|gb|EFY13979.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322617621|gb|EFY14520.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322624749|gb|EFY21578.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322630298|gb|EFY27068.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322634479|gb|EFY31212.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322639189|gb|EFY35881.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322640052|gb|EFY36719.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322645727|gb|EFY42251.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322651503|gb|EFY47878.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322656062|gb|EFY52361.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322659415|gb|EFY55662.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322665875|gb|EFY62058.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322669885|gb|EFY66026.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322673871|gb|EFY69968.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322678629|gb|EFY74685.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322683575|gb|EFY79589.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322687651|gb|EFY83621.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|322715376|gb|EFZ06947.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323130658|gb|ADX18088.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|323193515|gb|EFZ78720.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323198420|gb|EFZ83522.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323201934|gb|EFZ86996.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323208528|gb|EFZ93467.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323209763|gb|EFZ94687.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323218299|gb|EGA03009.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323222944|gb|EGA07293.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323227379|gb|EGA11544.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323232294|gb|EGA16397.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323235672|gb|EGA19756.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323241167|gb|EGA25203.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323244909|gb|EGA28911.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323250028|gb|EGA33922.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323254449|gb|EGA38264.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323254951|gb|EGA38742.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323260331|gb|EGA43950.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323268093|gb|EGA51570.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323270814|gb|EGA54252.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|326624148|gb|EGE30493.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326628534|gb|EGE34877.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] gi|332989260|gb|AEF08243.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 220 Score = 150 bits (378), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 74/160 (46%), Positives = 106/160 (66%), Gaps = 3/160 (1%) Query: 19 LEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78 L+K + + E+ +K + + +V W R S+ FGL+CC VEM+ + +D Sbjct: 19 LQKQEIVTDPLEQEV-NKNVFMGKLHDMVNWGRKNSIWPYNFGLSCCYVEMVTSFTAVHD 77 Query: 79 LERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137 + RFG RASPRQ+D+M+VAGT KMA ++R+YDQM EP++VISMG+CAN GG Y Sbjct: 78 VARFGAEVLRASPRQADLMVVAGTCFTKMAPVIQRLYDQMLEPKWVISMGACANSGGMYD 137 Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 YSVV+G D+ +PVD+Y+PGCPP EA + ++LLQ+ I Sbjct: 138 I-YSVVQGVDKFIPVDVYIPGCPPRPEAYMQALMLLQESI 176 >gi|26990814|ref|NP_746239.1| NADH dehydrogenase subunit B [Pseudomonas putida KT2440] gi|148546983|ref|YP_001267085.1| NADH dehydrogenase subunit B [Pseudomonas putida F1] gi|81586001|sp|Q88FH6|NUOB_PSEPK RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|238065196|sp|A5W191|NUOB_PSEP1 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|24985820|gb|AAN69703.1|AE016606_6 NADH dehydrogenase I, B subunit [Pseudomonas putida KT2440] gi|148511041|gb|ABQ77901.1| NADH-quinone oxidoreductase, B subunit [Pseudomonas putida F1] gi|313498030|gb|ADR59396.1| NuoB [Pseudomonas putida BIRD-1] Length = 225 Score = 150 bits (378), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 75/156 (48%), Positives = 102/156 (65%), Gaps = 6/156 (3%) Query: 27 SRISSEITHKGFLVTSVDQL----VTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82 ++ + HK + ++ + V W R SL FGL+CC VEM A +D+ RF Sbjct: 27 DQLLEDQVHKNIFMGKLEDVLRGAVNWGRKNSLWPYNFGLSCCYVEMTTAFTAPHDIARF 86 Query: 83 GFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYS 141 G RASPRQ+D M++AGT KMA ++R+Y+QM EP++VISMGSCAN GG Y YS Sbjct: 87 GAEVIRASPRQADFMVIAGTCFVKMAPIIQRLYEQMLEPKWVISMGSCANSGGMYDI-YS 145 Query: 142 VVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 VV+G D+ +PVD+YVPGCPP EA + G++LLQ+ I Sbjct: 146 VVQGVDKFLPVDVYVPGCPPRPEAFLQGLMLLQESI 181 >gi|325277477|ref|ZP_08143082.1| NADH dehydrogenase subunit B [Pseudomonas sp. TJI-51] gi|324097393|gb|EGB95634.1| NADH dehydrogenase subunit B [Pseudomonas sp. TJI-51] Length = 225 Score = 150 bits (378), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 75/156 (48%), Positives = 102/156 (65%), Gaps = 6/156 (3%) Query: 27 SRISSEITHKGFLVTSVDQL----VTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82 ++ + HK + ++ + V W R SL FGL+CC VEM A +D+ RF Sbjct: 27 DQLLEDQVHKNIFMGKLEDVLRGAVNWGRKNSLWPYNFGLSCCYVEMTTAFTAPHDIARF 86 Query: 83 GFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYS 141 G RASPRQ+D M++AGT KMA ++R+Y+QM EP++VISMGSCAN GG Y YS Sbjct: 87 GAEVIRASPRQADFMVIAGTCFVKMAPIIQRLYEQMLEPKWVISMGSCANSGGMYDI-YS 145 Query: 142 VVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 VV+G D+ +PVD+YVPGCPP EA + G++LLQ+ I Sbjct: 146 VVQGVDKFLPVDVYVPGCPPRPEAFLQGLMLLQESI 181 >gi|255961387|ref|YP_003097580.1| NADH dehydrogenase 27 kDa subunit [Dendrocalamus latiflorus] gi|255040264|gb|ACT99924.1| NADH dehydrogenase 27 kDa subunit [Dendrocalamus latiflorus] Length = 246 Score = 150 bits (378), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 65/149 (43%), Positives = 102/149 (68%), Gaps = 1/149 (0%) Query: 32 EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPR 91 + + + T+ + L W++ SL + +G +CC +E R+D +R+G+ P++SPR Sbjct: 32 QTSSNSVISTTPNDLSNWSKLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGWVPKSSPR 91 Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIV 150 Q+++++ AGT T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++ Sbjct: 92 QANLILTAGTETMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLI 151 Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRR 179 PVD+Y+PGCPP EA+I + L+KKI R Sbjct: 152 PVDVYLPGCPPKPEAVIDALTKLRKKISR 180 >gi|152971215|ref|YP_001336324.1| NADH dehydrogenase subunit B [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|206576675|ref|YP_002237325.1| NADH-quinone oxidoreductase, B subunit [Klebsiella pneumoniae 342] gi|238895804|ref|YP_002920540.1| NADH dehydrogenase subunit B [Klebsiella pneumoniae NTUH-K2044] gi|262043327|ref|ZP_06016456.1| NADH dehydrogenase I subunit B [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|288934255|ref|YP_003438314.1| NADH-quinone oxidoreductase subunit beta [Klebsiella variicola At-22] gi|290508458|ref|ZP_06547829.1| NADH dehydrogenase I subunit B [Klebsiella sp. 1_1_55] gi|311278756|ref|YP_003940987.1| NADH-quinone oxidoreductase, B subunit [Enterobacter cloacae SCF1] gi|330003557|ref|ZP_08304672.1| NADH dehydrogenase I subunit B [Klebsiella sp. MS 92-3] gi|238065162|sp|B5XNV5|NUOB_KLEP3 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|238065163|sp|A6TBX3|NUOB_KLEP7 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|150956064|gb|ABR78094.1| NADH dehydrogenase beta subunit [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|206565733|gb|ACI07509.1| NADH-quinone oxidoreductase, B subunit [Klebsiella pneumoniae 342] gi|238548122|dbj|BAH64473.1| NADH dehydrogenase beta subunit [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|259039351|gb|EEW40493.1| NADH dehydrogenase I subunit B [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|288888984|gb|ADC57302.1| NADH-quinone oxidoreductase, B subunit [Klebsiella variicola At-22] gi|289777852|gb|EFD85849.1| NADH dehydrogenase I subunit B [Klebsiella sp. 1_1_55] gi|308747951|gb|ADO47703.1| NADH-quinone oxidoreductase, B subunit [Enterobacter cloacae SCF1] gi|328536897|gb|EGF63196.1| NADH dehydrogenase I subunit B [Klebsiella sp. MS 92-3] Length = 224 Score = 150 bits (378), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 72/144 (50%), Positives = 100/144 (69%), Gaps = 2/144 (1%) Query: 35 HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQS 93 + G L ++ +V W R S+ FGL+CC VEM+ + +D+ RFG RASPRQ+ Sbjct: 38 YMGKLEHALHDMVNWGRKNSIWPYNFGLSCCYVEMVTSFTAVHDVARFGAEVLRASPRQA 97 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD 153 D+M+VAGT KMA ++R+YDQM EP++VISMG+CAN GG Y YSVV+G D+ +PVD Sbjct: 98 DLMVVAGTCFTKMAPVIQRLYDQMLEPKWVISMGACANSGGMYDI-YSVVQGVDKFIPVD 156 Query: 154 IYVPGCPPTAEALIYGILLLQKKI 177 +Y+PGCPP EA + ++LLQ+ I Sbjct: 157 VYIPGCPPRPEAYMQALMLLQESI 180 >gi|308187603|ref|YP_003931734.1| NADH dehydrogenase I chain B [Pantoea vagans C9-1] gi|308058113|gb|ADO10285.1| NADH dehydrogenase I chain B [Pantoea vagans C9-1] Length = 225 Score = 150 bits (378), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 73/142 (51%), Positives = 97/142 (68%), Gaps = 2/142 (1%) Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95 G L ++ +V W R SL FGL+CC VEM + +D+ RFG RASPRQ+D Sbjct: 41 GKLENALHDMVNWGRKNSLWPYNFGLSCCYVEMTTSFTAVHDVARFGAEVMRASPRQADF 100 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155 M++AGT KMA ++R+YDQM EP++VISMG+CAN GG Y YSVV+G D+ +PVD+Y Sbjct: 101 MVIAGTPFTKMAPVIQRLYDQMLEPKWVISMGACANSGGMYDI-YSVVQGVDKFLPVDVY 159 Query: 156 VPGCPPTAEALIYGILLLQKKI 177 +PGCPP EA + +LLLQ+ I Sbjct: 160 IPGCPPRPEAYMQALLLLQESI 181 >gi|226227808|ref|YP_002761914.1| NADH-quinone oxidoreductase chain B [Gemmatimonas aurantiaca T-27] gi|226090999|dbj|BAH39444.1| NADH-quinone oxidoreductase chain B [Gemmatimonas aurantiaca T-27] Length = 171 Score = 150 bits (378), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 75/141 (53%), Positives = 99/141 (70%), Gaps = 2/141 (1%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQSDVM 96 +L T D+LV WAR SL F ACCA+E M S YD +RFG A PR SPRQ+D++ Sbjct: 20 YLTTRKDELVGWARKFSLFPYPFVTACCAMEFMAVSASAYDTDRFGAALPRFSPRQADLL 79 Query: 97 IVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV 156 +V GT+T K A L +VY+QM EP++V++ G CA+ GG+Y +Y+ + G DRI+PVDIYV Sbjct: 80 MVVGTVTQKQAPILLKVYEQMCEPKWVMAFGVCASTGGFYQ-NYASLPGIDRIIPVDIYV 138 Query: 157 PGCPPTAEALIYGILLLQKKI 177 PGCPP E +I GI+ LQ+KI Sbjct: 139 PGCPPRPEMVIDGIMRLQEKI 159 >gi|197285619|ref|YP_002151491.1| NADH dehydrogenase subunit B [Proteus mirabilis HI4320] gi|226327884|ref|ZP_03803402.1| hypothetical protein PROPEN_01765 [Proteus penneri ATCC 35198] gi|227356122|ref|ZP_03840512.1| NADH-quinone oxidoreductase chain B [Proteus mirabilis ATCC 29906] gi|238065191|sp|B4EZC9|NUOB_PROMH RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|194683106|emb|CAR43667.1| NADH-quinone oxidoreductase chain B [Proteus mirabilis HI4320] gi|225203588|gb|EEG85942.1| hypothetical protein PROPEN_01765 [Proteus penneri ATCC 35198] gi|227163767|gb|EEI48679.1| NADH-quinone oxidoreductase chain B [Proteus mirabilis ATCC 29906] Length = 224 Score = 150 bits (378), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 73/142 (51%), Positives = 98/142 (69%), Gaps = 2/142 (1%) Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95 G L ++ +V W R SL FGL+CC VEM+ + +D+ RFG RASPRQ+D Sbjct: 40 GKLEHALHDVVNWGRKNSLWPYNFGLSCCYVEMVTSFTAVHDVARFGSEVLRASPRQADF 99 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155 M+VAGT KMA ++R+YDQM EP++VISMG+CAN GG Y YSVV+G D+ +PVD+Y Sbjct: 100 MVVAGTCFTKMAPVIQRLYDQMLEPKWVISMGACANSGGMYDI-YSVVQGVDKFIPVDVY 158 Query: 156 VPGCPPTAEALIYGILLLQKKI 177 +PGCPP EA + ++LLQ+ I Sbjct: 159 IPGCPPRPEAYMQALMLLQESI 180 >gi|242239967|ref|YP_002988148.1| NADH dehydrogenase subunit B [Dickeya dadantii Ech703] gi|242132024|gb|ACS86326.1| NADH-quinone oxidoreductase, B subunit [Dickeya dadantii Ech703] Length = 224 Score = 150 bits (378), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 74/143 (51%), Positives = 99/143 (69%), Gaps = 2/143 (1%) Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95 G L ++ +V W R+ SL FGL+CC VEM + +D+ RFG RASPRQ+D Sbjct: 40 GNLEHALHNMVNWGRSNSLWPYNFGLSCCYVEMATSFTAVHDVARFGSEVIRASPRQADF 99 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155 M+VAGT KMA ++R+YDQM EP++VISMG+CAN GG Y YSVV+G D+ +PVD+Y Sbjct: 100 MVVAGTPFLKMAPVIQRLYDQMLEPKWVISMGACANSGGMYDI-YSVVQGVDKFLPVDVY 158 Query: 156 VPGCPPTAEALIYGILLLQKKIR 178 +PGCPP EA + +LLL++ IR Sbjct: 159 IPGCPPRPEAYMQALLLLKESIR 181 >gi|319760615|ref|YP_004124553.1| NADH-quinone oxidoreductase, subunit B [Candidatus Blochmannia vafer str. BVAF] gi|318039329|gb|ADV33879.1| NADH-quinone oxidoreductase, subunit B [Candidatus Blochmannia vafer str. BVAF] Length = 222 Score = 149 bits (377), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 75/142 (52%), Positives = 96/142 (67%), Gaps = 2/142 (1%) Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95 G L + ++V W R SL FGL+CC VEM A +D+ RFG R+SPRQSD Sbjct: 41 GKLTAFLHKIVNWGRGNSLWPYNFGLSCCYVEMTTAFTAVHDVARFGSEVLRSSPRQSDF 100 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155 M++AGT KM ++R+YDQM EP++VISMG+CAN GG Y YSVV+G D+ +PVDIY Sbjct: 101 MVIAGTPFIKMVPVIQRLYDQMLEPKWVISMGACANSGGMYDI-YSVVQGVDKFLPVDIY 159 Query: 156 VPGCPPTAEALIYGILLLQKKI 177 +PGCPP EA I +LLL+K I Sbjct: 160 IPGCPPRPEAYIQALLLLKKSI 181 >gi|326565205|gb|EGE15391.1| NADH dehydrogenase subunit B [Moraxella catarrhalis 103P14B1] gi|326574002|gb|EGE23951.1| NADH dehydrogenase subunit B [Moraxella catarrhalis CO72] gi|326577029|gb|EGE26924.1| NADH dehydrogenase subunit B [Moraxella catarrhalis 101P30B1] Length = 222 Score = 149 bits (377), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 78/144 (54%), Positives = 95/144 (65%), Gaps = 2/144 (1%) Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95 G L L W R SL FG +CC VE +DL RFG RASPRQ+DV Sbjct: 38 GRLSDLTHNLANWGRKNSLWPFNFGTSCCYVEYATTLTGVHDLSRFGAEVIRASPRQADV 97 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155 MIVAGT KMA + R+Y+QM EP++VISMG+CAN GG Y YSVV+G D+I+PVD+Y Sbjct: 98 MIVAGTCFVKMAPVILRLYEQMLEPKWVISMGACANSGGMYDI-YSVVQGVDKILPVDVY 156 Query: 156 VPGCPPTAEALIYGILLLQKKIRR 179 VPGCPP EALI I+LLQ+ I++ Sbjct: 157 VPGCPPRPEALIQAIMLLQESIQK 180 >gi|52550302|gb|AAU84151.1| F420H2 dehydrogenase subunit B [uncultured archaeon GZfos37B2] Length = 175 Score = 149 bits (377), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 65/144 (45%), Positives = 94/144 (65%) Query: 35 HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSD 94 H+ + ++ W R SL +MT + CC VEM+ A YD +RFG PR SPR +D Sbjct: 20 HEFLKKSPAQDVINWGRKNSLWFMTQPMGCCGVEMIAAGCSHYDTDRFGIIPRCSPRHAD 79 Query: 95 VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154 VM+++G + K AL+R+Y+QMP P++VI MG+C+ GG ++ SY+ ++ D I PVD+ Sbjct: 80 VMVISGYIVRKYFPALKRLYEQMPSPKWVICMGNCSISGGPFYRSYNTLQNIDEIFPVDV 139 Query: 155 YVPGCPPTAEALIYGILLLQKKIR 178 Y+ GCPP EALI G + LQKKI+ Sbjct: 140 YITGCPPRPEALIQGFIELQKKIK 163 >gi|296103968|ref|YP_003614114.1| NADH dehydrogenase subunit B [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295058427|gb|ADF63165.1| NADH dehydrogenase subunit B [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295098074|emb|CBK87164.1| NADH dehydrogenase subunit B [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 224 Score = 149 bits (377), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 72/144 (50%), Positives = 100/144 (69%), Gaps = 2/144 (1%) Query: 35 HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQS 93 + G L ++ +V W R S+ FGL+CC VEM+ + +D+ RFG RASPRQ+ Sbjct: 38 YMGKLEHAMHDMVNWGRKNSIWPYNFGLSCCYVEMVTSFTAVHDVARFGAEVLRASPRQA 97 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD 153 D+M+VAGT KMA ++R+YDQM EP++VISMG+CAN GG Y YSVV+G D+ +PVD Sbjct: 98 DLMVVAGTCFTKMAPVIQRLYDQMLEPKWVISMGACANSGGMYDI-YSVVQGVDKFIPVD 156 Query: 154 IYVPGCPPTAEALIYGILLLQKKI 177 +Y+PGCPP EA + ++LLQ+ I Sbjct: 157 VYIPGCPPRPEAYMQALMLLQESI 180 >gi|304398215|ref|ZP_07380089.1| NADH-quinone oxidoreductase, B subunit [Pantoea sp. aB] gi|304354081|gb|EFM18454.1| NADH-quinone oxidoreductase, B subunit [Pantoea sp. aB] Length = 225 Score = 149 bits (377), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 73/142 (51%), Positives = 97/142 (68%), Gaps = 2/142 (1%) Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95 G L ++ +V W R SL FGL+CC VEM + +D+ RFG RASPRQ+D Sbjct: 41 GKLENALHDMVNWGRKNSLWPYNFGLSCCYVEMTTSFTAVHDVARFGAEVMRASPRQADF 100 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155 M++AGT KMA ++R+YDQM EP++VISMG+CAN GG Y YSVV+G D+ +PVD+Y Sbjct: 101 MVIAGTPFTKMAPVIQRLYDQMLEPKWVISMGACANSGGMYDI-YSVVQGVDKFLPVDVY 159 Query: 156 VPGCPPTAEALIYGILLLQKKI 177 +PGCPP EA + +LLLQ+ I Sbjct: 160 IPGCPPRPEAYMQALLLLQESI 181 >gi|70731257|ref|YP_260998.1| NADH dehydrogenase subunit B [Pseudomonas fluorescens Pf-5] gi|123654431|sp|Q4K9T5|NUOB_PSEF5 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|68345556|gb|AAY93162.1| NADH-quinone oxidoreductase, B subunit [Pseudomonas fluorescens Pf-5] Length = 224 Score = 149 bits (377), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 75/148 (50%), Positives = 99/148 (66%), Gaps = 6/148 (4%) Query: 35 HKGFLVTSVDQL----VTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RAS 89 HK + ++ + V W R SL FGL+CC VEM A +D+ RFG RAS Sbjct: 34 HKNIFMGKLEDVLSGAVNWGRKNSLWPYNFGLSCCYVEMTTAFTAPHDIARFGAEVIRAS 93 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQ+D M++AGT KMA ++R+Y+QM EP++VISMGSCAN GG Y YSVV+G D+ Sbjct: 94 PRQADFMVIAGTCFIKMAPIIQRLYEQMLEPKWVISMGSCANSGGMYDI-YSVVQGVDKF 152 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKI 177 +PVD+YVPGCPP EA + G++LLQ+ I Sbjct: 153 LPVDVYVPGCPPRPEAFLQGLMLLQESI 180 >gi|77459826|ref|YP_349333.1| NADH dehydrogenase subunit B [Pseudomonas fluorescens Pf0-1] gi|123604056|sp|Q3KA62|NUOB_PSEPF RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|77383829|gb|ABA75342.1| NADH dehydrogenase subunit B [Pseudomonas fluorescens Pf0-1] Length = 224 Score = 149 bits (377), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 75/148 (50%), Positives = 99/148 (66%), Gaps = 6/148 (4%) Query: 35 HKGFLVTSVDQL----VTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RAS 89 HK + ++ + V W R SL FGL+CC VEM A +D+ RFG RAS Sbjct: 34 HKNIFMGKLEDVLSGAVNWGRKNSLWPYNFGLSCCYVEMTTAFTAPHDIARFGAEVIRAS 93 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQ+D M++AGT KMA ++R+Y+QM EP++VISMGSCAN GG Y YSVV+G D+ Sbjct: 94 PRQADFMVIAGTCFIKMAPIIQRLYEQMLEPKWVISMGSCANSGGMYDI-YSVVQGVDKF 152 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKI 177 +PVD+YVPGCPP EA + G++LLQ+ I Sbjct: 153 LPVDVYVPGCPPRPEAFLQGLMLLQESI 180 >gi|301353373|ref|YP_003795584.1| NADH-plastoquinone oxidoreductase subunit K [Pteridium aquilinum subsp. aquilinum] gi|301016291|gb|ADK47578.1| NADH-plastoquinone oxidoreductase subunit K [Pteridium aquilinum subsp. aquilinum] Length = 252 Score = 149 bits (377), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 66/142 (46%), Positives = 97/142 (68%), Gaps = 1/142 (0%) Query: 39 LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIV 98 + ++ W+R SL + +G +CC +E R+D +R+G PR+SPRQ+D+++ Sbjct: 42 FLANISDFSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLIVT 101 Query: 99 AGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPVDIYVP 157 AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG SYS VRG D+++PVDI++P Sbjct: 102 AGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMSSTDSYSTVRGVDKLIPVDIHLP 161 Query: 158 GCPPTAEALIYGILLLQKKIRR 179 GCPP EA+I + L+KKI R Sbjct: 162 GCPPKPEAIIDAVTKLRKKIAR 183 >gi|116515039|ref|YP_802668.1| NADH dehydrogenase subunit B [Buchnera aphidicola str. Cc (Cinara cedri)] gi|122285565|sp|Q057X4|NUOB_BUCCC RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|116256893|gb|ABJ90575.1| NADH dehydrogenase I chain B [Buchnera aphidicola str. Cc (Cinara cedri)] Length = 225 Score = 149 bits (377), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 83/180 (46%), Positives = 107/180 (59%), Gaps = 4/180 (2%) Query: 3 LTTVNQK--IISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTF 60 LT VN K I SL+K + G + + ++ W R SL F Sbjct: 5 LTRVNTKNSISKKYPLRSLKKTSDPIKKQIKNNIFFGTISKYMQYIMNWGRKNSLWPYNF 64 Query: 61 GLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119 GL+CC VEM+ A +D+ RFG R SPRQ+D M++AGT KMA ++R+YD M E Sbjct: 65 GLSCCYVEMVSAFTSIHDISRFGSEVLRTSPRQADFMVIAGTPFIKMAPVIQRLYDLMLE 124 Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179 P++VISMGSCAN GG Y YSVV+G D+ +PVDIY+PGCPP EA I+ I LLQK I + Sbjct: 125 PKWVISMGSCANSGGMYDI-YSVVQGVDKFLPVDIYIPGCPPRPEAYIHAITLLQKAISK 183 >gi|261340675|ref|ZP_05968533.1| NADH dehydrogenase I subunit B [Enterobacter cancerogenus ATCC 35316] gi|288317089|gb|EFC56027.1| NADH dehydrogenase I subunit B [Enterobacter cancerogenus ATCC 35316] Length = 224 Score = 149 bits (377), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 72/144 (50%), Positives = 100/144 (69%), Gaps = 2/144 (1%) Query: 35 HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQS 93 + G L ++ +V W R S+ FGL+CC VEM+ + +D+ RFG RASPRQ+ Sbjct: 38 YMGKLEHAMHDMVNWGRKNSIWPYNFGLSCCYVEMVTSFTAVHDVARFGAEVLRASPRQA 97 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD 153 D+M+VAGT KMA ++R+YDQM EP++VISMG+CAN GG Y YSVV+G D+ +PVD Sbjct: 98 DLMVVAGTCFTKMAPVIQRLYDQMLEPKWVISMGACANSGGMYDI-YSVVQGVDKFIPVD 156 Query: 154 IYVPGCPPTAEALIYGILLLQKKI 177 +Y+PGCPP EA + ++LLQ+ I Sbjct: 157 VYIPGCPPRPEAYMQALMLLQESI 180 >gi|28870530|ref|NP_793149.1| NADH dehydrogenase I subunit B [Pseudomonas syringae pv. tomato str. DC3000] gi|71737615|ref|YP_275280.1| NADH dehydrogenase subunit B [Pseudomonas syringae pv. phaseolicola 1448A] gi|213970034|ref|ZP_03398166.1| NADH dehydrogenase subunit B [Pseudomonas syringae pv. tomato T1] gi|237800544|ref|ZP_04589005.1| NADH dehydrogenase subunit B [Pseudomonas syringae pv. oryzae str. 1_6] gi|257485440|ref|ZP_05639481.1| NADH dehydrogenase subunit B [Pseudomonas syringae pv. tabaci ATCC 11528] gi|289625427|ref|ZP_06458381.1| NADH dehydrogenase subunit B [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289649290|ref|ZP_06480633.1| NADH dehydrogenase subunit B [Pseudomonas syringae pv. aesculi str. 2250] gi|289679197|ref|ZP_06500087.1| NADH dehydrogenase subunit B [Pseudomonas syringae pv. syringae FF5] gi|298487549|ref|ZP_07005591.1| NADH-ubiquinone oxidoreductase chain B [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|301381389|ref|ZP_07229807.1| NADH dehydrogenase subunit B [Pseudomonas syringae pv. tomato Max13] gi|302062160|ref|ZP_07253701.1| NADH dehydrogenase subunit B [Pseudomonas syringae pv. tomato K40] gi|302130363|ref|ZP_07256353.1| NADH dehydrogenase subunit B [Pseudomonas syringae pv. tomato NCPPB 1108] gi|302185024|ref|ZP_07261697.1| NADH dehydrogenase subunit B [Pseudomonas syringae pv. syringae 642] gi|81730555|sp|Q87ZQ8|NUOB_PSESM RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|123635950|sp|Q48H53|NUOB_PSE14 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|28853778|gb|AAO56844.1| NADH dehydrogenase I, B subunit [Pseudomonas syringae pv. tomato str. DC3000] gi|71558168|gb|AAZ37379.1| NADH-quinone oxidoreductase, B subunit [Pseudomonas syringae pv. phaseolicola 1448A] gi|213925138|gb|EEB58701.1| NADH dehydrogenase subunit B [Pseudomonas syringae pv. tomato T1] gi|298157933|gb|EFH99011.1| NADH-ubiquinone oxidoreductase chain B [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|320323789|gb|EFW79873.1| NADH dehydrogenase subunit B [Pseudomonas syringae pv. glycinea str. B076] gi|320327928|gb|EFW83933.1| NADH dehydrogenase subunit B [Pseudomonas syringae pv. glycinea str. race 4] gi|330866837|gb|EGH01546.1| NADH dehydrogenase subunit B [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330875772|gb|EGH09921.1| NADH dehydrogenase subunit B [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|330889659|gb|EGH22320.1| NADH dehydrogenase subunit B [Pseudomonas syringae pv. mori str. 301020] gi|330900626|gb|EGH32045.1| NADH dehydrogenase subunit B [Pseudomonas syringae pv. japonica str. M301072PT] gi|330940383|gb|EGH43487.1| NADH dehydrogenase subunit B [Pseudomonas syringae pv. pisi str. 1704B] gi|330954562|gb|EGH54822.1| NADH dehydrogenase subunit B [Pseudomonas syringae Cit 7] gi|330965590|gb|EGH65850.1| NADH dehydrogenase subunit B [Pseudomonas syringae pv. actinidiae str. M302091] gi|330981370|gb|EGH79473.1| NADH dehydrogenase subunit B [Pseudomonas syringae pv. aptata str. DSM 50252] gi|330987943|gb|EGH86046.1| NADH dehydrogenase subunit B [Pseudomonas syringae pv. lachrymans str. M301315] gi|331010726|gb|EGH90782.1| NADH dehydrogenase subunit B [Pseudomonas syringae pv. tabaci ATCC 11528] gi|331017272|gb|EGH97328.1| NADH dehydrogenase subunit B [Pseudomonas syringae pv. lachrymans str. M302278PT] gi|331023404|gb|EGI03461.1| NADH dehydrogenase subunit B [Pseudomonas syringae pv. oryzae str. 1_6] Length = 224 Score = 149 bits (377), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 75/144 (52%), Positives = 98/144 (68%), Gaps = 2/144 (1%) Query: 35 HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQS 93 + G L ++ V W R SL FGL+CC VEM A +D+ RFG RASPRQ+ Sbjct: 38 YMGKLEDVLNGAVNWGRKNSLWPYNFGLSCCYVEMTTAFTAPHDIARFGAEVIRASPRQA 97 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD 153 D M++AGT KMA ++R+Y+QM EP++VISMGSCAN GG Y YSVV+G D+ +PVD Sbjct: 98 DFMVIAGTCFIKMAPIIQRLYEQMLEPKWVISMGSCANSGGMYDI-YSVVQGVDKFLPVD 156 Query: 154 IYVPGCPPTAEALIYGILLLQKKI 177 +YVPGCPP EA + G++LLQ+ I Sbjct: 157 VYVPGCPPRPEAFLQGLMLLQESI 180 >gi|237732318|ref|ZP_04562799.1| trifunctional NADH dehydrogenase I subunit B/C/D [Citrobacter sp. 30_2] gi|283832283|ref|ZP_06352024.1| NADH dehydrogenase I subunit B [Citrobacter youngae ATCC 29220] gi|226907857|gb|EEH93775.1| trifunctional NADH dehydrogenase I subunit B/C/D [Citrobacter sp. 30_2] gi|291071927|gb|EFE10036.1| NADH dehydrogenase I subunit B [Citrobacter youngae ATCC 29220] Length = 220 Score = 149 bits (377), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 74/160 (46%), Positives = 105/160 (65%), Gaps = 3/160 (1%) Query: 19 LEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78 L+K + + E+ +K + + +V W R S+ FGL+CC VEM+ + +D Sbjct: 19 LQKQEIVTDPLEQEV-NKNVFMGKLHDMVNWGRKNSIWPYNFGLSCCYVEMVTSFTAVHD 77 Query: 79 LERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137 + RFG RASPRQ+D+M+VAGT KMA ++R+YDQM EP++VISMG+CAN GG Y Sbjct: 78 VARFGAEVLRASPRQADLMVVAGTCFTKMAPVIQRLYDQMLEPKWVISMGACANSGGMYD 137 Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 YSVV+G D+ +PVD+Y+PGCPP EA + ++LLQ I Sbjct: 138 I-YSVVQGVDKFIPVDVYIPGCPPRPEAYMQALMLLQDSI 176 >gi|222632346|gb|EEE64478.1| hypothetical protein OsJ_19328 [Oryza sativa Japonica Group] Length = 976 Score = 149 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 64/73 (87%), Positives = 69/73 (94%) Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL 166 AS+ +VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL Sbjct: 894 ASSASQVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL 953 Query: 167 IYGILLLQKKIRR 179 +YG+L LQKKI R Sbjct: 954 LYGVLQLQKKINR 966 >gi|323148910|ref|YP_004222465.1| NADH-plastoquinone oxidoreductase subunit K [Smilax china] gi|308742601|gb|ADO33452.1| NADH-plastoquinone oxidoreductase subunit K [Smilax china] Length = 284 Score = 149 bits (376), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 67/147 (45%), Positives = 101/147 (68%), Gaps = 1/147 (0%) Query: 32 EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPR 91 + T + T+++ L W+R SL + +G +CC +E R+D +R+G PR+SPR Sbjct: 70 QTTPNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPR 129 Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIV 150 ++ +++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++ Sbjct: 130 KAALILPAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLI 189 Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKI 177 PVD+Y+PGCPP EA+I I L+KKI Sbjct: 190 PVDVYLPGCPPKPEAVIDAITKLRKKI 216 >gi|291618188|ref|YP_003520930.1| NuoB [Pantoea ananatis LMG 20103] gi|291153218|gb|ADD77802.1| NuoB [Pantoea ananatis LMG 20103] gi|327394581|dbj|BAK12003.1| NADH-quinone oxidoreductase chain B NuoB [Pantoea ananatis AJ13355] Length = 225 Score = 149 bits (376), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 73/142 (51%), Positives = 97/142 (68%), Gaps = 2/142 (1%) Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95 G L ++ +V W R SL FGL+CC VEM + +D+ RFG RASPRQ+D Sbjct: 41 GKLEHALHDMVNWGRKNSLWPYNFGLSCCYVEMTTSFTAVHDVARFGAEVMRASPRQADF 100 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155 M++AGT KMA ++R+YDQM EP++VISMG+CAN GG Y YSVV+G D+ +PVD+Y Sbjct: 101 MVIAGTPFTKMAPVIQRLYDQMLEPKWVISMGACANSGGMYDI-YSVVQGVDKFLPVDVY 159 Query: 156 VPGCPPTAEALIYGILLLQKKI 177 +PGCPP EA + +LLLQ+ I Sbjct: 160 IPGCPPRPEAYMQALLLLQESI 181 >gi|330503270|ref|YP_004380139.1| NADH dehydrogenase subunit B [Pseudomonas mendocina NK-01] gi|328917556|gb|AEB58387.1| NADH dehydrogenase subunit B [Pseudomonas mendocina NK-01] Length = 225 Score = 149 bits (376), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 74/144 (51%), Positives = 98/144 (68%), Gaps = 2/144 (1%) Query: 35 HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQS 93 + G L ++ V W R SL FGL+CC VEM A +D+ RFG RASPRQ+ Sbjct: 39 YMGKLSDVLNGAVNWGRKNSLWPYNFGLSCCYVEMTTAFTAPHDVARFGAEVIRASPRQA 98 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD 153 D M++AGT KMA ++R+Y+QM EP++VISMGSCAN GG Y YSVV+G D+ +PVD Sbjct: 99 DFMVIAGTCFIKMAPVIQRLYEQMLEPKWVISMGSCANSGGMYDI-YSVVQGVDKFLPVD 157 Query: 154 IYVPGCPPTAEALIYGILLLQKKI 177 +Y+PGCPP EA + G++LLQ+ I Sbjct: 158 VYIPGCPPRPEAFLQGLMLLQESI 181 >gi|94677027|ref|YP_588824.1| NADH dehydrogenase subunit B [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] gi|238055242|sp|Q1LT90|NUOB_BAUCH RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|94220177|gb|ABF14336.1| NADH-quinone oxidoreductase, B subunit [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] Length = 224 Score = 149 bits (376), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 79/170 (46%), Positives = 108/170 (63%), Gaps = 5/170 (2%) Query: 12 SGQSSCSLEKVDADFSRISSEIT---HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVE 68 S ++ SL++ D+ I + + G L + +V W R SL FGL+CC VE Sbjct: 12 SKENRKSLQEDDSATLLIEQHVNSNIYLGKLKHILKSIVKWGRGNSLWPYNFGLSCCYVE 71 Query: 69 MMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMG 127 M + +D+ RFG RASPRQ+D M++AGT KMA ++R+YDQM EP++VISMG Sbjct: 72 MTTSFTAVHDVARFGSEVIRASPRQADFMVIAGTPFIKMAPVIKRLYDQMLEPKWVISMG 131 Query: 128 SCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 SCAN GG Y YSVV+G D+ +PVD+Y+PGCPP EA I +LLL++ I Sbjct: 132 SCANSGGMYDI-YSVVQGVDKFLPVDVYIPGCPPRPEAYIQALLLLKEAI 180 >gi|320540451|ref|ZP_08040101.1| putative NADH:ubiquinone oxidoreductase, chain B [Serratia symbiotica str. Tucson] gi|320029382|gb|EFW11411.1| putative NADH:ubiquinone oxidoreductase, chain B [Serratia symbiotica str. Tucson] Length = 224 Score = 149 bits (376), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 72/142 (50%), Positives = 99/142 (69%), Gaps = 2/142 (1%) Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95 G L +V +V W R S+ FGL+CC VEM+ + +D+ RFG RASPRQ+D+ Sbjct: 40 GKLEHAVHDMVNWGRKNSIWPYNFGLSCCYVEMVNSFTAVHDVARFGAEVLRASPRQADL 99 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155 M+VAGT KMA ++R+Y+QM EP++VISMG+CAN GG Y YSVV+G D+ +PVD+Y Sbjct: 100 MVVAGTCFTKMAPVIQRLYEQMLEPKWVISMGACANSGGMYDI-YSVVQGVDKFLPVDVY 158 Query: 156 VPGCPPTAEALIYGILLLQKKI 177 +PGCPP EA + ++LLQ+ I Sbjct: 159 IPGCPPRPEAYMQALMLLQESI 180 >gi|318606467|emb|CBY27965.1| NADH-ubiquinone oxidoreductase chain B [Yersinia enterocolitica subsp. palearctica Y11] Length = 225 Score = 149 bits (376), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 73/142 (51%), Positives = 98/142 (69%), Gaps = 2/142 (1%) Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95 G L ++ +V W R SL FGL+CC VEM+ + +D+ RFG RASPRQ+D Sbjct: 41 GKLENAMHDMVNWGRKNSLWPYNFGLSCCYVEMVTSFTAVHDVARFGAEVLRASPRQADF 100 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155 M+VAGT KMA ++R+Y+QM EP++VISMG+CAN GG Y YSVV+G D+ +PVD+Y Sbjct: 101 MVVAGTCFTKMAPVIQRLYEQMLEPKWVISMGACANSGGMYDI-YSVVQGVDKFLPVDVY 159 Query: 156 VPGCPPTAEALIYGILLLQKKI 177 +PGCPP EA + +LLLQ+ I Sbjct: 160 IPGCPPRPEAYMQALLLLQESI 181 >gi|156933123|ref|YP_001437039.1| NADH dehydrogenase subunit B [Cronobacter sakazakii ATCC BAA-894] gi|260598704|ref|YP_003211275.1| NADH dehydrogenase subunit B [Cronobacter turicensis z3032] gi|238065141|sp|A7MH23|NUOB_ENTS8 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|156531377|gb|ABU76203.1| hypothetical protein ESA_00933 [Cronobacter sakazakii ATCC BAA-894] gi|260217881|emb|CBA32432.1| NADH-quinone oxidoreductase subunit B [Cronobacter turicensis z3032] Length = 224 Score = 149 bits (376), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 73/142 (51%), Positives = 98/142 (69%), Gaps = 2/142 (1%) Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95 G L ++ +V W R SL FGL+CC VEM+ + +D+ RFG RASPRQ+D Sbjct: 40 GKLEHALHDMVNWGRKNSLWPYNFGLSCCYVEMVTSFTAVHDVARFGAEVLRASPRQADF 99 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155 M+VAGT KMA ++R+YDQM EP++VISMG+CAN GG Y YSVV+G D+ +PVD+Y Sbjct: 100 MVVAGTPFTKMAPVIQRLYDQMLEPKWVISMGACANSGGMYDI-YSVVQGVDKFLPVDVY 158 Query: 156 VPGCPPTAEALIYGILLLQKKI 177 +PGCPP EA + ++LLQ+ I Sbjct: 159 IPGCPPRPEAYMQALMLLQESI 180 >gi|146312473|ref|YP_001177547.1| NADH dehydrogenase subunit B [Enterobacter sp. 638] gi|238065140|sp|A4WCR6|NUOB_ENT38 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|145319349|gb|ABP61496.1| NADH dehydrogenase subunit B [Enterobacter sp. 638] Length = 224 Score = 149 bits (376), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 76/163 (46%), Positives = 106/163 (65%), Gaps = 5/163 (3%) Query: 19 LEKVDADFSRISSEIT---HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMP 75 L+K + + EI + G L ++ +V W R S+ FGL+CC VEM+ + Sbjct: 19 LQKQEIVTDPLEQEINKSVYMGKLEHAMHDMVNWGRKNSIWPYNFGLSCCYVEMVTSFTA 78 Query: 76 RYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGG 134 +D+ RFG RASPRQ+D+M+VAGT KMA ++R+YDQM EP++VISMG+CAN GG Sbjct: 79 VHDVARFGAEVLRASPRQADLMVVAGTCFTKMAPVIQRLYDQMLEPKWVISMGACANSGG 138 Query: 135 YYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 Y YSVV+G D+ +PVD+Y+PGCPP EA + ++LLQ I Sbjct: 139 MYDI-YSVVQGVDKFIPVDVYIPGCPPRPEAYMQALMLLQDSI 180 >gi|226953551|ref|ZP_03824015.1| NADH dehydrogenase I subunit B [Acinetobacter sp. ATCC 27244] gi|294649461|ref|ZP_06726885.1| NADH-quinone oxidoreductase subunit B [Acinetobacter haemolyticus ATCC 19194] gi|226835729|gb|EEH68112.1| NADH dehydrogenase I subunit B [Acinetobacter sp. ATCC 27244] gi|292824631|gb|EFF83410.1| NADH-quinone oxidoreductase subunit B [Acinetobacter haemolyticus ATCC 19194] Length = 225 Score = 149 bits (376), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 76/153 (49%), Positives = 102/153 (66%), Gaps = 6/153 (3%) Query: 31 SEITHKGFLVTSVDQL----VTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP 86 E +K ++T ++ + V W R SL FG +CC VE +DL RFG Sbjct: 28 EEEVNKSVMMTRLEDVLHTAVNWGRKNSLWPFNFGTSCCYVEYATTLTGVHDLSRFGAEV 87 Query: 87 -RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRG 145 RASPRQ+D+MIVAGT KMA ++R+Y+QM EP++VISMG+CAN GG Y YSVV+G Sbjct: 88 IRASPRQADLMIVAGTCFVKMAPVIQRLYEQMLEPKWVISMGACANSGGMYDI-YSVVQG 146 Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 D+I+PVD+Y+PGCPP EALI ++LLQ +I+ Sbjct: 147 VDKIIPVDVYIPGCPPRPEALIQALMLLQDQIQ 179 >gi|262373374|ref|ZP_06066653.1| trifunctional NADH dehydrogenase I subunit B/C/D [Acinetobacter junii SH205] gi|262313399|gb|EEY94484.1| trifunctional NADH dehydrogenase I subunit B/C/D [Acinetobacter junii SH205] Length = 225 Score = 149 bits (376), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 76/153 (49%), Positives = 102/153 (66%), Gaps = 6/153 (3%) Query: 31 SEITHKGFLVTSVDQL----VTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP 86 E +K ++T ++ + V W R SL FG +CC VE +DL RFG Sbjct: 28 EEEVNKSVMMTRLEDVLHTAVNWGRKNSLWPFNFGTSCCYVEYATTLTGVHDLSRFGAEV 87 Query: 87 -RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRG 145 RASPRQ+D+MIVAGT KMA ++R+Y+QM EP++VISMG+CAN GG Y YSVV+G Sbjct: 88 IRASPRQADLMIVAGTCFVKMAPVIQRLYEQMLEPKWVISMGACANSGGMYDI-YSVVQG 146 Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 D+I+PVD+Y+PGCPP EALI ++LLQ +I+ Sbjct: 147 VDKIIPVDVYIPGCPPRPEALIQALMLLQDQIQ 179 >gi|146307436|ref|YP_001187901.1| NADH dehydrogenase subunit B [Pseudomonas mendocina ymp] gi|238065195|sp|A4XV03|NUOB_PSEMY RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|145575637|gb|ABP85169.1| NADH dehydrogenase subunit B [Pseudomonas mendocina ymp] Length = 225 Score = 149 bits (376), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 73/149 (48%), Positives = 100/149 (67%), Gaps = 6/149 (4%) Query: 34 THKGFLVTSVDQL----VTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RA 88 HK + ++++ + W R SL FGL+CC VEM A +D+ RFG RA Sbjct: 34 VHKNIYMGKLEEVLNGAINWGRKNSLWPYNFGLSCCYVEMTTAFTAPHDVARFGAEVIRA 93 Query: 89 SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 148 SPRQ+D M++AGT KMA ++R+Y+QM EP++VISMGSCAN GG Y YSVV+G D+ Sbjct: 94 SPRQADFMVIAGTCFIKMAPVIQRLYEQMLEPKWVISMGSCANSGGMYDI-YSVVQGVDK 152 Query: 149 IVPVDIYVPGCPPTAEALIYGILLLQKKI 177 +PVD+Y+PGCPP EA + G++LLQ+ I Sbjct: 153 FLPVDVYIPGCPPRPEAFLQGLMLLQESI 181 >gi|22125526|ref|NP_668949.1| NADH dehydrogenase subunit B [Yersinia pestis KIM 10] gi|45442154|ref|NP_993693.1| NADH dehydrogenase subunit B [Yersinia pestis biovar Microtus str. 91001] gi|51596905|ref|YP_071096.1| NADH dehydrogenase subunit B [Yersinia pseudotuberculosis IP 32953] gi|108808041|ref|YP_651957.1| NADH dehydrogenase subunit B [Yersinia pestis Antiqua] gi|108812311|ref|YP_648078.1| NADH dehydrogenase subunit B [Yersinia pestis Nepal516] gi|123441677|ref|YP_001005661.1| NADH dehydrogenase subunit B [Yersinia enterocolitica subsp. enterocolitica 8081] gi|145599244|ref|YP_001163320.1| NADH dehydrogenase subunit B [Yersinia pestis Pestoides F] gi|149365540|ref|ZP_01887575.1| NADH dehydrogenase I chain B [Yersinia pestis CA88-4125] gi|162419739|ref|YP_001606303.1| NADH dehydrogenase subunit B [Yersinia pestis Angola] gi|165925479|ref|ZP_02221311.1| NADH-quinone oxidoreductase, B subunit [Yersinia pestis biovar Orientalis str. F1991016] gi|165937679|ref|ZP_02226241.1| NADH-quinone oxidoreductase, B subunit [Yersinia pestis biovar Orientalis str. IP275] gi|166008478|ref|ZP_02229376.1| NADH-quinone oxidoreductase, B subunit [Yersinia pestis biovar Antiqua str. E1979001] gi|166213868|ref|ZP_02239903.1| NADH-quinone oxidoreductase, B subunit [Yersinia pestis biovar Antiqua str. B42003004] gi|167398671|ref|ZP_02304195.1| NADH-quinone oxidoreductase, B subunit [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167422249|ref|ZP_02314002.1| NADH-quinone oxidoreductase, B subunit [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167424429|ref|ZP_02316182.1| NADH-quinone oxidoreductase, B subunit [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167470575|ref|ZP_02335279.1| NADH-quinone oxidoreductase, B subunit [Yersinia pestis FV-1] gi|170023802|ref|YP_001720307.1| NADH dehydrogenase subunit B [Yersinia pseudotuberculosis YPIII] gi|186895986|ref|YP_001873098.1| NADH dehydrogenase subunit B [Yersinia pseudotuberculosis PB1/+] gi|218929640|ref|YP_002347515.1| NADH dehydrogenase subunit B [Yersinia pestis CO92] gi|229838096|ref|ZP_04458255.1| NADH:ubiquinone oxidoreductase, chain B [Yersinia pestis biovar Orientalis str. PEXU2] gi|229895295|ref|ZP_04510469.1| NADH:ubiquinone oxidoreductase, chain B [Yersinia pestis Pestoides A] gi|229898656|ref|ZP_04513801.1| NADH:ubiquinone oxidoreductase, chain B [Yersinia pestis biovar Orientalis str. India 195] gi|229902655|ref|ZP_04517772.1| NADH:ubiquinone oxidoreductase, chain B [Yersinia pestis Nepal516] gi|238759963|ref|ZP_04621116.1| NADH-quinone oxidoreductase subunit B [Yersinia aldovae ATCC 35236] gi|238763927|ref|ZP_04624884.1| NADH-quinone oxidoreductase subunit B [Yersinia kristensenii ATCC 33638] gi|238784999|ref|ZP_04628997.1| NADH-quinone oxidoreductase subunit B [Yersinia bercovieri ATCC 43970] gi|238794606|ref|ZP_04638213.1| NADH-quinone oxidoreductase subunit B [Yersinia intermedia ATCC 29909] gi|238798405|ref|ZP_04641886.1| NADH-quinone oxidoreductase subunit B [Yersinia mollaretii ATCC 43969] gi|270490163|ref|ZP_06207237.1| NADH dehydrogenase subunit B [Yersinia pestis KIM D27] gi|294504368|ref|YP_003568430.1| NADH dehydrogenase beta subunit [Yersinia pestis Z176003] gi|332162388|ref|YP_004298965.1| NADH dehydrogenase subunit B [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|81639043|sp|Q669A1|NUOB_YERPS RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|122979538|sp|Q1C6B0|NUOB_YERPA RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|122980104|sp|Q1CHQ2|NUOB_YERPN RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|123777024|sp|Q7CJ93|NUOB_YERPE RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|238065222|sp|A1JLG4|NUOB_YERE8 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|238065224|sp|B2K820|NUOB_YERPB RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|238065225|sp|A9R6L9|NUOB_YERPG RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|238065226|sp|A4TM35|NUOB_YERPP RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|238065227|sp|B1JGL4|NUOB_YERPY RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|21958425|gb|AAM85200.1|AE013766_3 NADH dehydrogenase I chain B [Yersinia pestis KIM 10] gi|45437018|gb|AAS62570.1| NADH dehydrogenase I chain B [Yersinia pestis biovar Microtus str. 91001] gi|51590187|emb|CAH21824.1| NADH dehydrogenase I chain B [Yersinia pseudotuberculosis IP 32953] gi|108775959|gb|ABG18478.1| NADH dehydrogenase I chain B [Yersinia pestis Nepal516] gi|108779954|gb|ABG14012.1| NADH dehydrogenase I chain B [Yersinia pestis Antiqua] gi|115348251|emb|CAL21179.1| NADH dehydrogenase I chain B [Yersinia pestis CO92] gi|122088638|emb|CAL11433.1| NADH dehydrogenase I chain B [Yersinia enterocolitica subsp. enterocolitica 8081] gi|145210940|gb|ABP40347.1| NADH dehydrogenase I chain B [Yersinia pestis Pestoides F] gi|149291953|gb|EDM42027.1| NADH dehydrogenase I chain B [Yersinia pestis CA88-4125] gi|162352554|gb|ABX86502.1| NADH-quinone oxidoreductase, B subunit [Yersinia pestis Angola] gi|165914429|gb|EDR33044.1| NADH-quinone oxidoreductase, B subunit [Yersinia pestis biovar Orientalis str. IP275] gi|165922588|gb|EDR39739.1| NADH-quinone oxidoreductase, B subunit [Yersinia pestis biovar Orientalis str. F1991016] gi|165992860|gb|EDR45161.1| NADH-quinone oxidoreductase, B subunit [Yersinia pestis biovar Antiqua str. E1979001] gi|166205042|gb|EDR49522.1| NADH-quinone oxidoreductase, B subunit [Yersinia pestis biovar Antiqua str. B42003004] gi|166958755|gb|EDR55776.1| NADH-quinone oxidoreductase, B subunit [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167051175|gb|EDR62583.1| NADH-quinone oxidoreductase, B subunit [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167056311|gb|EDR66080.1| NADH-quinone oxidoreductase, B subunit [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169750336|gb|ACA67854.1| NADH-quinone oxidoreductase, B subunit [Yersinia pseudotuberculosis YPIII] gi|186699012|gb|ACC89641.1| NADH-quinone oxidoreductase, B subunit [Yersinia pseudotuberculosis PB1/+] gi|229680102|gb|EEO76201.1| NADH:ubiquinone oxidoreductase, chain B [Yersinia pestis Nepal516] gi|229688204|gb|EEO80275.1| NADH:ubiquinone oxidoreductase, chain B [Yersinia pestis biovar Orientalis str. India 195] gi|229694462|gb|EEO84509.1| NADH:ubiquinone oxidoreductase, chain B [Yersinia pestis biovar Orientalis str. PEXU2] gi|229701781|gb|EEO89806.1| NADH:ubiquinone oxidoreductase, chain B [Yersinia pestis Pestoides A] gi|238697895|gb|EEP90655.1| NADH-quinone oxidoreductase subunit B [Yersinia kristensenii ATCC 33638] gi|238701790|gb|EEP94354.1| NADH-quinone oxidoreductase subunit B [Yersinia aldovae ATCC 35236] gi|238714115|gb|EEQ06129.1| NADH-quinone oxidoreductase subunit B [Yersinia bercovieri ATCC 43970] gi|238717719|gb|EEQ09554.1| NADH-quinone oxidoreductase subunit B [Yersinia mollaretii ATCC 43969] gi|238726092|gb|EEQ17639.1| NADH-quinone oxidoreductase subunit B [Yersinia intermedia ATCC 29909] gi|262362643|gb|ACY59364.1| NADH dehydrogenase beta subunit [Yersinia pestis D106004] gi|270338667|gb|EFA49444.1| NADH dehydrogenase subunit B [Yersinia pestis KIM D27] gi|294354827|gb|ADE65168.1| NADH dehydrogenase beta subunit [Yersinia pestis Z176003] gi|320014608|gb|ADV98179.1| NADH:ubiquinone oxidoreductase, chain B [Yersinia pestis biovar Medievalis str. Harbin 35] gi|325666618|gb|ADZ43262.1| NADH dehydrogenase subunit B [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330860335|emb|CBX70648.1| NADH-quinone oxidoreductase subunit B [Yersinia enterocolitica W22703] Length = 225 Score = 149 bits (376), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 73/142 (51%), Positives = 98/142 (69%), Gaps = 2/142 (1%) Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95 G L ++ +V W R SL FGL+CC VEM+ + +D+ RFG RASPRQ+D Sbjct: 41 GKLENAMHDMVNWGRKNSLWPYNFGLSCCYVEMVTSFTAVHDVARFGAEVLRASPRQADF 100 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155 M+VAGT KMA ++R+Y+QM EP++VISMG+CAN GG Y YSVV+G D+ +PVD+Y Sbjct: 101 MVVAGTCFTKMAPVIQRLYEQMLEPKWVISMGACANSGGMYDI-YSVVQGVDKFLPVDVY 159 Query: 156 VPGCPPTAEALIYGILLLQKKI 177 +PGCPP EA + +LLLQ+ I Sbjct: 160 IPGCPPRPEAYMQALLLLQESI 181 >gi|149374626|ref|ZP_01892400.1| NADH dehydrogenase subunit B [Marinobacter algicola DG893] gi|149361329|gb|EDM49779.1| NADH dehydrogenase subunit B [Marinobacter algicola DG893] Length = 225 Score = 149 bits (376), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 75/144 (52%), Positives = 96/144 (66%), Gaps = 2/144 (1%) Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95 G L ++ V W R SL FGL+CC VEM A +D+ RFG RASPRQ+D Sbjct: 41 GKLSDVLNSAVNWGRKNSLWPYNFGLSCCYVEMTTAFTAPHDIARFGSEVIRASPRQADF 100 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155 M++AGT KMA ++++YDQM EP++VISMGSCAN GG Y YSVV+G D+ +PVD+Y Sbjct: 101 MVIAGTCFIKMAPVIQQLYDQMLEPKWVISMGSCANSGGMYDI-YSVVQGVDKFLPVDVY 159 Query: 156 VPGCPPTAEALIYGILLLQKKIRR 179 VPGCPP EA + G+ LLQ I+ Sbjct: 160 VPGCPPRPEAFLQGLQLLQDSIQE 183 >gi|50083950|ref|YP_045460.1| NADH dehydrogenase subunit B [Acinetobacter sp. ADP1] gi|81393679|sp|Q6FE70|NUOB_ACIAD RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|49529926|emb|CAG67638.1| NADH dehydrogenase I chain B [Acinetobacter sp. ADP1] Length = 225 Score = 149 bits (376), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 77/154 (50%), Positives = 100/154 (64%), Gaps = 5/154 (3%) Query: 29 ISSEITHKGFLVTSVDQL---VTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA 85 + E+ F+ D L V W R S+ FG +CC VE +DL RFG Sbjct: 27 LQEEVNKNVFMTRLEDVLHNVVNWGRKNSVWPFNFGTSCCYVEYATTLTGVHDLSRFGAE 86 Query: 86 P-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR 144 RASPRQ+D+MIVAGT KMA ++R+Y+QM EP++VISMG+CAN GG Y YSVV+ Sbjct: 87 VIRASPRQADLMIVAGTCFVKMAPVIQRLYEQMLEPKWVISMGACANSGGMYDI-YSVVQ 145 Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 G D+I+PVD+YVPGCPP EALI ++LLQ +I+ Sbjct: 146 GVDKIIPVDVYVPGCPPRPEALIQALMLLQDQIQ 179 >gi|170721056|ref|YP_001748744.1| NADH dehydrogenase subunit B [Pseudomonas putida W619] gi|238065198|sp|B1J6N3|NUOB_PSEPW RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|169759059|gb|ACA72375.1| NADH-quinone oxidoreductase, B subunit [Pseudomonas putida W619] Length = 225 Score = 149 bits (375), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 75/156 (48%), Positives = 102/156 (65%), Gaps = 6/156 (3%) Query: 27 SRISSEITHKGFLVTSVDQL----VTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82 ++ + HK + ++ + V W R SL FGL+CC VEM A +D+ RF Sbjct: 27 DQLLEDQVHKNIYMGKLEDVLRGAVNWGRKNSLWPYNFGLSCCYVEMTTAFTAPHDIARF 86 Query: 83 GFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYS 141 G RASPRQ+D M++AGT KMA ++R+Y+QM EP++VISMGSCAN GG Y YS Sbjct: 87 GAEVIRASPRQADFMVIAGTCFIKMAPIIQRLYEQMLEPKWVISMGSCANSGGMYDI-YS 145 Query: 142 VVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 VV+G D+ +PVD+YVPGCPP EA + G++LLQ+ I Sbjct: 146 VVQGVDKFLPVDVYVPGCPPRPEAFLQGLMLLQESI 181 >gi|256422834|ref|YP_003123487.1| NADH-quinone oxidoreductase, B subunit [Chitinophaga pinensis DSM 2588] gi|256037742|gb|ACU61286.1| NADH-quinone oxidoreductase, B subunit [Chitinophaga pinensis DSM 2588] Length = 212 Score = 149 bits (375), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 69/148 (46%), Positives = 100/148 (67%), Gaps = 2/148 (1%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RAS 89 E + ++T+V L+ W R S+ FGL+CC VEM + +YD+ RFG R + Sbjct: 22 EEAVSRSIMLTTVQDLLAWGRKNSMWPFHFGLSCCFVEMATSITSKYDVARFGAEVIRGT 81 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PR++DVM++AGT+ KM ++R+++QM EPR+VISMGSCAN GG Y YSVV+G D+ Sbjct: 82 PREADVMVIAGTVFIKMVPIIKRLHEQMMEPRWVISMGSCANSGGMYDI-YSVVQGVDKF 140 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKI 177 +PVD+YVPGCPP +A + G++LL + Sbjct: 141 LPVDVYVPGCPPRPDAFMQGLVLLGNSV 168 >gi|104782522|ref|YP_609020.1| NADH dehydrogenase subunit B [Pseudomonas entomophila L48] gi|167034688|ref|YP_001669919.1| NADH dehydrogenase subunit B [Pseudomonas putida GB-1] gi|122402719|sp|Q1I7Z9|NUOB_PSEE4 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|238065197|sp|B0KMX9|NUOB_PSEPG RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|95111509|emb|CAK16229.1| NADH dehydrogenase I chain B [Pseudomonas entomophila L48] gi|166861176|gb|ABY99583.1| NADH-quinone oxidoreductase, B subunit [Pseudomonas putida GB-1] Length = 225 Score = 149 bits (375), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 75/156 (48%), Positives = 102/156 (65%), Gaps = 6/156 (3%) Query: 27 SRISSEITHKGFLVTSVDQL----VTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82 ++ + HK + ++ + V W R SL FGL+CC VEM A +D+ RF Sbjct: 27 DQLLEDQVHKNIYMGKLEDVLRGAVNWGRKNSLWPYNFGLSCCYVEMTTAFTAPHDIARF 86 Query: 83 GFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYS 141 G RASPRQ+D M++AGT KMA ++R+Y+QM EP++VISMGSCAN GG Y YS Sbjct: 87 GAEVIRASPRQADFMVIAGTCFVKMAPIIQRLYEQMLEPKWVISMGSCANSGGMYDI-YS 145 Query: 142 VVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 VV+G D+ +PVD+YVPGCPP EA + G++LLQ+ I Sbjct: 146 VVQGVDKFLPVDVYVPGCPPRPEAFLQGLMLLQESI 181 >gi|242278962|ref|YP_002991091.1| NADH-quinone oxidoreductase, B subunit [Desulfovibrio salexigens DSM 2638] gi|242121856|gb|ACS79552.1| NADH-quinone oxidoreductase, B subunit [Desulfovibrio salexigens DSM 2638] Length = 179 Score = 149 bits (375), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 69/130 (53%), Positives = 96/130 (73%), Gaps = 3/130 (2%) Query: 51 RTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASA 109 R+ SL MTFGLACCA+EMM M R+D+ RFG R S RQ+D+MIVAGT+T KMA A Sbjct: 32 RSMSLWPMTFGLACCAIEMMAVGMARFDMARFGAEVFRPSARQADLMIVAGTVTKKMAPA 91 Query: 110 LRRVYDQMPEPRYVISMGSCANGGGYYHYS--YSVVRGCDRIVPVDIYVPGCPPTAEALI 167 + R+Y+QMP P++V+++G+CA GG + + Y +V G D ++PVD+YVPGCPP EAL+ Sbjct: 92 VVRLYEQMPAPKWVLALGNCAISGGPFKFKGQYGIVEGVDNLIPVDVYVPGCPPRPEALL 151 Query: 168 YGILLLQKKI 177 G+ +Q+K+ Sbjct: 152 EGLFQIQEKV 161 >gi|86158991|ref|YP_465776.1| NADH dehydrogenase subunit B [Anaeromyxobacter dehalogenans 2CP-C] gi|123498617|sp|Q2IL12|NUOB1_ANADE RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName: Full=NADH dehydrogenase I subunit B 1; AltName: Full=NDH-1 subunit B 1 gi|85775502|gb|ABC82339.1| NADH dehydrogenase subunit B [Anaeromyxobacter dehalogenans 2CP-C] Length = 182 Score = 149 bits (375), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 72/144 (50%), Positives = 102/144 (70%), Gaps = 2/144 (1%) Query: 36 KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQSD 94 +GFL V + + WAR SL F ACC +E M + RYD +RFG A PR SPRQ+D Sbjct: 19 EGFLQGLVSKSLGWARKYSLFTYPFVTACCGMEYMTMASARYDSDRFGAAMPRFSPRQAD 78 Query: 95 VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154 +++V GT+ K A L+R+Y+QM +P++V++ G CA+ GG+Y +Y+ V+G DRI+PVD+ Sbjct: 79 LLMVVGTVNCKQAPILQRIYEQMADPKWVMAFGVCASSGGFYD-NYATVQGIDRIIPVDV 137 Query: 155 YVPGCPPTAEALIYGILLLQKKIR 178 YVPGCPP E ++ GI+LLQKKI+ Sbjct: 138 YVPGCPPRPEQVLDGIMLLQKKIQ 161 >gi|300723691|ref|YP_003712998.1| NADH dehydrogenase I subunit B [Xenorhabdus nematophila ATCC 19061] gi|297630215|emb|CBJ90866.1| NADH dehydrogenase I chain B [Xenorhabdus nematophila ATCC 19061] Length = 224 Score = 149 bits (375), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 72/142 (50%), Positives = 98/142 (69%), Gaps = 2/142 (1%) Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95 G L ++ +V W R SL FGL+CC VEM+ + +D+ RFG RASPRQ+D Sbjct: 40 GKLENALHDMVNWGRKNSLWPYNFGLSCCYVEMVTSFTAVHDVARFGAEVLRASPRQADF 99 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155 M+++GT KMA ++R+YDQM EP++VISMG+CAN GG Y YSVV+G D+ +PVD+Y Sbjct: 100 MVISGTCFVKMAPVIQRLYDQMLEPKWVISMGACANSGGMYDI-YSVVQGVDKFIPVDVY 158 Query: 156 VPGCPPTAEALIYGILLLQKKI 177 +PGCPP EA + +LLLQ+ I Sbjct: 159 IPGCPPRPEAYMQALLLLQESI 180 >gi|197121690|ref|YP_002133641.1| NADH dehydrogenase subunit B [Anaeromyxobacter sp. K] gi|238065027|sp|B4UIA7|NUOB2_ANASK RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName: Full=NADH dehydrogenase I subunit B 2; AltName: Full=NDH-1 subunit B 2 gi|196171539|gb|ACG72512.1| NADH-quinone oxidoreductase, B subunit [Anaeromyxobacter sp. K] Length = 182 Score = 149 bits (375), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 72/144 (50%), Positives = 102/144 (70%), Gaps = 2/144 (1%) Query: 36 KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQSD 94 +GFL V + + WAR SL F ACC +E M + RYD +RFG A PR SPRQ+D Sbjct: 19 EGFLQGLVSKSLGWARKYSLFTYPFVTACCGMEYMTMASARYDSDRFGAAMPRFSPRQAD 78 Query: 95 VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154 +++V GT+ K A L+RVY+QM +P++V++ G CA+ GG+Y +Y+ V+G DR++PVD+ Sbjct: 79 LLMVVGTVNCKQAPILQRVYEQMADPKWVMAFGVCASSGGFYD-NYATVQGIDRVIPVDV 137 Query: 155 YVPGCPPTAEALIYGILLLQKKIR 178 YVPGCPP E ++ GI+LLQKKI+ Sbjct: 138 YVPGCPPRPEQVLDGIMLLQKKIQ 161 >gi|220916486|ref|YP_002491790.1| NADH-quinone oxidoreductase, B subunit [Anaeromyxobacter dehalogenans 2CP-1] gi|238065052|sp|B8JH22|NUOB_ANAD2 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|219954340|gb|ACL64724.1| NADH-quinone oxidoreductase, B subunit [Anaeromyxobacter dehalogenans 2CP-1] Length = 182 Score = 149 bits (375), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 72/144 (50%), Positives = 102/144 (70%), Gaps = 2/144 (1%) Query: 36 KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQSD 94 +GFL V + + WAR SL F ACC +E M + RYD +RFG A PR SPRQ+D Sbjct: 19 EGFLQGLVSKSLGWARKYSLFTYPFVTACCGMEYMTMASARYDSDRFGAAMPRFSPRQAD 78 Query: 95 VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154 +++V GT+ K A L+RVY+QM +P++V++ G CA+ GG+Y +Y+ V+G DR++PVD+ Sbjct: 79 LLMVVGTVNCKQAPILQRVYEQMADPKWVMAFGVCASSGGFYD-NYATVQGIDRVIPVDV 137 Query: 155 YVPGCPPTAEALIYGILLLQKKIR 178 YVPGCPP E ++ GI+LLQKKI+ Sbjct: 138 YVPGCPPRPEQVLDGIMLLQKKIQ 161 >gi|238751247|ref|ZP_04612741.1| NADH-quinone oxidoreductase subunit B [Yersinia rohdei ATCC 43380] gi|238788653|ref|ZP_04632445.1| NADH-quinone oxidoreductase subunit B [Yersinia frederiksenii ATCC 33641] gi|238710521|gb|EEQ02745.1| NADH-quinone oxidoreductase subunit B [Yersinia rohdei ATCC 43380] gi|238723248|gb|EEQ14896.1| NADH-quinone oxidoreductase subunit B [Yersinia frederiksenii ATCC 33641] Length = 186 Score = 149 bits (375), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 73/142 (51%), Positives = 98/142 (69%), Gaps = 2/142 (1%) Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95 G L ++ +V W R SL FGL+CC VEM+ + +D+ RFG RASPRQ+D Sbjct: 2 GKLENAMHDMVNWGRKNSLWPYNFGLSCCYVEMVTSFTAVHDVARFGAEVLRASPRQADF 61 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155 M+VAGT KMA ++R+Y+QM EP++VISMG+CAN GG Y YSVV+G D+ +PVD+Y Sbjct: 62 MVVAGTCFTKMAPVIQRLYEQMLEPKWVISMGACANSGGMYDI-YSVVQGVDKFLPVDVY 120 Query: 156 VPGCPPTAEALIYGILLLQKKI 177 +PGCPP EA + +LLLQ+ I Sbjct: 121 IPGCPPRPEAYMQALLLLQESI 142 >gi|86748473|ref|YP_484969.1| NADH-quinone oxidoreductase, B subunit [Rhodopseudomonas palustris HaA2] gi|123408621|sp|Q2J0F2|NUOB_RHOP2 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|86571501|gb|ABD06058.1| NADH-quinone oxidoreductase, B subunit [Rhodopseudomonas palustris HaA2] Length = 208 Score = 149 bits (375), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 70/140 (50%), Positives = 101/140 (72%), Gaps = 2/140 (1%) Query: 39 LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMI 97 L T+++ L W+R SL FGL+CC VE + A P YD RFG RASPRQ+D+++ Sbjct: 26 LFTTLEDLTAWSRKHSLWPFNFGLSCCYVEQVTALTPVYDQARFGAEVIRASPRQADLLV 85 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 V+GT+ +KMA+ L R+Y+QM PR+VI+MG+CA GG Y YSVV+G DR +PVD+Y+P Sbjct: 86 VSGTVFHKMAAPLLRLYEQMRAPRWVIAMGACACSGGMYDI-YSVVQGVDRFIPVDVYIP 144 Query: 158 GCPPTAEALIYGILLLQKKI 177 GCPP EA++ +++LQ+++ Sbjct: 145 GCPPRPEAMLDALIMLQQQV 164 >gi|119719986|ref|YP_920481.1| NADH-quinone oxidoreductase, B subunit [Thermofilum pendens Hrk 5] gi|119525106|gb|ABL78478.1| NADH-quinone oxidoreductase, B subunit [Thermofilum pendens Hrk 5] Length = 171 Score = 149 bits (375), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 68/139 (48%), Positives = 96/139 (69%), Gaps = 1/139 (0%) Query: 41 TSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAG 100 T + L WA T SL + F +CC E S PR+D ERFGF P SPRQ+++M++ G Sbjct: 28 TPIRSLRDWAITFSLWPVHFTTSCCGAEFAATSAPRFDAERFGFLPFNSPRQTNLMVIEG 87 Query: 101 TLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCP 160 TLT KM A + VYDQMP P++VI+MG+CA GG ++ SY++VR D I+PV+ ++PGCP Sbjct: 88 TLTKKMGEAAKIVYDQMPWPKFVIAMGACAIDGGLFYNSYNIVRPKD-ILPVEYFIPGCP 146 Query: 161 PTAEALIYGILLLQKKIRR 179 P EA+ I++LQ+K+R+ Sbjct: 147 PRPEAVAQAIIMLQEKVRK 165 >gi|11304|emb|CAA45612.1| ndhK [Glycine max] Length = 224 Score = 149 bits (375), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 67/149 (44%), Positives = 100/149 (67%), Gaps = 1/149 (0%) Query: 32 EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPR 91 + T + T++ L W+R SL + +G +CC +E R+D +R+G PR+SPR Sbjct: 8 QTTKNSVISTTLIDLSNWSRLPSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPR 67 Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIV 150 Q+D+++ GT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++ Sbjct: 68 QADLILTVGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLI 127 Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRR 179 PVD+Y+PGCP EA+I I L+K+I R Sbjct: 128 PVDVYLPGCPTKPEAIIDAITKLRKEISR 156 >gi|312961687|ref|ZP_07776185.1| NADH-quinone oxidoreductase subunit B [Pseudomonas fluorescens WH6] gi|311283946|gb|EFQ62529.1| NADH-quinone oxidoreductase subunit B [Pseudomonas fluorescens WH6] Length = 224 Score = 149 bits (375), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 75/148 (50%), Positives = 99/148 (66%), Gaps = 6/148 (4%) Query: 35 HKGFLVTSVDQL----VTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RAS 89 HK + ++ + V W R SL FGL+CC VEM A +D+ RFG RAS Sbjct: 34 HKNIYMGKLEDVLSGAVNWGRKNSLWPYNFGLSCCYVEMTTAFTAPHDIARFGAEVIRAS 93 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQ+D M++AGT KMA ++R+Y+QM EP++VISMGSCAN GG Y YSVV+G D+ Sbjct: 94 PRQADFMVIAGTCFIKMAPIIQRLYEQMLEPKWVISMGSCANSGGMYDI-YSVVQGVDKF 152 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKI 177 +PVD+YVPGCPP EA + G++LLQ+ I Sbjct: 153 LPVDVYVPGCPPRPEAFLQGLMLLQESI 180 >gi|116329153|ref|YP_798873.1| NADH dehydrogenase (ubiquinone), B chain [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116330239|ref|YP_799957.1| NADH dehydrogenase (ubiquinone), B chain [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|122281998|sp|Q04V71|NUOB_LEPBJ RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|122283065|sp|Q04YA5|NUOB_LEPBL RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|116121897|gb|ABJ79940.1| NADH dehydrogenase (ubiquinone), B chain [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116123928|gb|ABJ75199.1| NADH dehydrogenase (ubiquinone), B chain [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 186 Score = 149 bits (375), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 69/159 (43%), Positives = 105/159 (66%), Gaps = 2/159 (1%) Query: 24 ADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFG 83 +D S+ + + +++ ++ W R SL F ACC +E M + YD+ RFG Sbjct: 4 SDLSKAPGQALGDMLQLGNIESVIQWGRGNSLWPFPFATACCGIEYMSTACSDYDIARFG 63 Query: 84 FA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142 P SPRQ+D+++V GT+T KMA LR++YDQM EP++VIS+G+CA+ GG ++ +Y V Sbjct: 64 AERPSFSPRQADMILVLGTITYKMAPVLRQIYDQMAEPKFVISVGACASSGGMFN-TYGV 122 Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181 ++G DRI+PVDIYVPGCPP EA++ ++ LQ K++ G Sbjct: 123 LQGVDRILPVDIYVPGCPPRPEAILDALVKLQTKLKTQG 161 >gi|293395171|ref|ZP_06639457.1| NADH dehydrogenase I subunit B [Serratia odorifera DSM 4582] gi|291422348|gb|EFE95591.1| NADH dehydrogenase I subunit B [Serratia odorifera DSM 4582] Length = 224 Score = 149 bits (375), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 73/142 (51%), Positives = 98/142 (69%), Gaps = 2/142 (1%) Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95 G L ++ +V W R SL FGL+CC VEM+ + +D+ RFG RASPRQ+D Sbjct: 40 GKLEHALHDMVNWGRKNSLWPYNFGLSCCYVEMVTSFTAVHDVARFGAEVLRASPRQADF 99 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155 M+VAGT KMA ++R+Y+QM EP++VISMG+CAN GG Y YSVV+G D+ +PVD+Y Sbjct: 100 MVVAGTCFTKMAPVIQRLYEQMLEPKWVISMGACANSGGMYDI-YSVVQGVDKFLPVDVY 158 Query: 156 VPGCPPTAEALIYGILLLQKKI 177 +PGCPP EA + +LLLQ+ I Sbjct: 159 IPGCPPRPEAYMQALLLLQESI 180 >gi|229591254|ref|YP_002873373.1| NADH dehydrogenase subunit B [Pseudomonas fluorescens SBW25] gi|259514679|sp|C3JY82|NUOB_PSEFS RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|229363120|emb|CAY50138.1| NADH-quinone oxidoreductase chain B [Pseudomonas fluorescens SBW25] Length = 224 Score = 149 bits (375), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 75/148 (50%), Positives = 99/148 (66%), Gaps = 6/148 (4%) Query: 35 HKGFLVTSVDQL----VTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RAS 89 HK + ++ + V W R SL FGL+CC VEM A +D+ RFG RAS Sbjct: 34 HKNIYMGKLEDVLSGAVNWGRKNSLWPYNFGLSCCYVEMTTAFTAPHDIARFGAEVIRAS 93 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQ+D M++AGT KMA ++R+Y+QM EP++VISMGSCAN GG Y YSVV+G D+ Sbjct: 94 PRQADFMVIAGTCFIKMAPIIQRLYEQMLEPKWVISMGSCANSGGMYDI-YSVVQGVDKF 152 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKI 177 +PVD+YVPGCPP EA + G++LLQ+ I Sbjct: 153 LPVDVYVPGCPPRPEAFLQGLMLLQESI 180 >gi|329296020|ref|ZP_08253356.1| NADH dehydrogenase subunit B [Plautia stali symbiont] Length = 225 Score = 149 bits (375), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 73/142 (51%), Positives = 97/142 (68%), Gaps = 2/142 (1%) Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95 G L ++ +V W R SL FGL+CC VEM + +D+ RFG RASPRQ+D Sbjct: 41 GKLEHALHDMVNWGRKNSLWPYNFGLSCCYVEMTTSFTAVHDVARFGAEVMRASPRQADF 100 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155 M++AGT KMA ++R+YDQM EP++VISMG+CAN GG Y YSVV+G D+ +PVD+Y Sbjct: 101 MVIAGTPFTKMAPVIQRLYDQMLEPKWVISMGACANSGGMYDI-YSVVQGVDKFLPVDVY 159 Query: 156 VPGCPPTAEALIYGILLLQKKI 177 +PGCPP EA + +LLL+K I Sbjct: 160 IPGCPPRPEAYMQALLLLRKSI 181 >gi|66046427|ref|YP_236268.1| NADH dehydrogenase subunit B [Pseudomonas syringae pv. syringae B728a] gi|75501522|sp|Q4ZRJ2|NUOB_PSEU2 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|63257134|gb|AAY38230.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit [Pseudomonas syringae pv. syringae B728a] gi|330972908|gb|EGH72974.1| NADH dehydrogenase subunit B [Pseudomonas syringae pv. aceris str. M302273PT] Length = 224 Score = 149 bits (375), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 75/148 (50%), Positives = 99/148 (66%), Gaps = 6/148 (4%) Query: 35 HKGFLVTSVDQL----VTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RAS 89 HK + ++ + V W R SL FGL+CC VEM A +D+ RFG RAS Sbjct: 34 HKNIYMGKLEDVLSGAVNWGRKNSLWPYNFGLSCCYVEMTTAFTAPHDIARFGAEVIRAS 93 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQ+D M++AGT KMA ++R+Y+QM EP++VISMGSCAN GG Y YSVV+G D+ Sbjct: 94 PRQADFMVIAGTCFIKMAPIIQRLYEQMLEPKWVISMGSCANSGGMYDI-YSVVQGVDKF 152 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKI 177 +PVD+YVPGCPP EA + G++LLQ+ I Sbjct: 153 LPVDVYVPGCPPRPEAFLQGLMLLQESI 180 >gi|92115246|ref|YP_575174.1| NADH dehydrogenase subunit B [Chromohalobacter salexigens DSM 3043] gi|122419105|sp|Q1QST3|NUOB_CHRSD RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|91798336|gb|ABE60475.1| NADH dehydrogenase subunit B [Chromohalobacter salexigens DSM 3043] Length = 226 Score = 148 bits (374), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 80/181 (44%), Positives = 110/181 (60%), Gaps = 5/181 (2%) Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGF---LVTSVDQLVTWARTGSLMWMT 59 LT +Q+ +S L + ++ + ++ F L ++ V W R SL Sbjct: 5 LTRADQEPAPDGASYPLGRRESTSDPMQEQVHRNVFTGKLEDVLNSTVNWGRKHSLWPYN 64 Query: 60 FGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMP 118 FGL+CC VEM A +D+ RFG RASPRQ+D M++AGT KMA ++++YDQM Sbjct: 65 FGLSCCYVEMTTAFTAPHDVARFGSEVIRASPRQADFMVIAGTCFIKMAPVIQQLYDQML 124 Query: 119 EPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 EP++VISMGSCAN GG Y YSVV+G D+ +PVD+YVPGCPP EA + G+ LLQ I+ Sbjct: 125 EPKWVISMGSCANSGGMYDI-YSVVQGVDKFLPVDVYVPGCPPRPEAFLQGLQLLQDSIQ 183 Query: 179 R 179 Sbjct: 184 E 184 >gi|330958158|gb|EGH58418.1| NADH dehydrogenase subunit B [Pseudomonas syringae pv. maculicola str. ES4326] Length = 224 Score = 148 bits (374), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 74/148 (50%), Positives = 99/148 (66%), Gaps = 6/148 (4%) Query: 35 HKGFLVTSVDQL----VTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RAS 89 HK + ++ + V W R SL FGL+CC VEM A +D+ RFG RAS Sbjct: 34 HKNIFMGKLEDVLNGAVNWGRKNSLWPYNFGLSCCYVEMTTAFTAPHDIARFGAEVIRAS 93 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQ+D M++AGT KMA ++R+Y+QM EP++VISMG+CAN GG Y YSVV+G D+ Sbjct: 94 PRQADFMVIAGTPFLKMAPIIQRLYEQMLEPKWVISMGACANSGGMYDI-YSVVQGVDKF 152 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKI 177 +PVD+YVPGCPP EA + G++LLQ+ I Sbjct: 153 LPVDVYVPGCPPRPEAFLQGLMLLQESI 180 >gi|238897506|ref|YP_002923185.1| NADH dehydrogenase I chain B, binds FeS cluster N2 [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229465263|gb|ACQ67037.1| NADH dehydrogenase I chain B, binds FeS cluster N2 [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 226 Score = 148 bits (374), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 77/168 (45%), Positives = 105/168 (62%), Gaps = 6/168 (3%) Query: 11 ISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMM 70 + Q + S + +D R + G L ++ V W R SL FGL+CC VEM+ Sbjct: 20 LQTQKNVSRDPLDEQAHRN----IYMGKLEHALHDTVNWGRKNSLWPYNFGLSCCYVEMV 75 Query: 71 QASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSC 129 + +D+ RFG RASPRQ+D M+VAGT KMA ++R+YDQM EP++VISMG+C Sbjct: 76 TSFTAVHDVARFGAEVLRASPRQADFMVVAGTCFTKMAPVIQRLYDQMLEPKWVISMGAC 135 Query: 130 ANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 AN GG Y YSVV+G D+ +PVD+Y+PGCPP EA + + LLQ+ I Sbjct: 136 ANSGGMYDI-YSVVQGVDKFLPVDVYIPGCPPRPEAYMQALFLLQESI 182 >gi|323698263|ref|ZP_08110175.1| NADH-quinone oxidoreductase, B subunit [Desulfovibrio sp. ND132] gi|323458195|gb|EGB14060.1| NADH-quinone oxidoreductase, B subunit [Desulfovibrio desulfuricans ND132] Length = 181 Score = 148 bits (374), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 72/130 (55%), Positives = 94/130 (72%), Gaps = 3/130 (2%) Query: 51 RTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASA 109 R SL MTFGLACCA+EMM M R+D+ RFG R SPRQSDVMIVAGT+ KMA + Sbjct: 38 RAMSLWPMTFGLACCAIEMMATGMARFDMARFGAEVFRPSPRQSDVMIVAGTVNKKMAPS 97 Query: 110 LRRVYDQMPEPRYVISMGSCANGGGYYHY--SYSVVRGCDRIVPVDIYVPGCPPTAEALI 167 + R+Y+QMP P++VI+MG+CA GG + +Y+V++G D ++PVD+YVPGCPP E L+ Sbjct: 98 VVRLYEQMPGPKWVIAMGNCAISGGPFKIKDNYNVIQGVDTLIPVDVYVPGCPPRPEGLL 157 Query: 168 YGILLLQKKI 177 G LQ+ I Sbjct: 158 EGFFELQRLI 167 >gi|284009321|emb|CBA76481.1| NADH-quinone oxidoreductase chain B [Arsenophonus nasoniae] Length = 229 Score = 148 bits (374), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 73/142 (51%), Positives = 97/142 (68%), Gaps = 2/142 (1%) Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95 G L ++ +V W R SL FGL+CC VEM+ + +D+ RFG RASPRQ+D Sbjct: 45 GKLEHALHNMVNWGRKNSLWPYNFGLSCCYVEMVTSFTAVHDVARFGAEVLRASPRQADF 104 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155 M+VAGT KMA ++R+YDQM P++VISMG+CAN GG Y YSVV+G D+ +PVD+Y Sbjct: 105 MVVAGTCFTKMAPVIQRLYDQMLAPKWVISMGACANSGGMYDI-YSVVQGVDKFLPVDVY 163 Query: 156 VPGCPPTAEALIYGILLLQKKI 177 +PGCPP EA + +LLLQ+ I Sbjct: 164 IPGCPPRPEAYMQALLLLQESI 185 >gi|326559970|gb|EGE10368.1| NADH dehydrogenase subunit B [Moraxella catarrhalis 46P47B1] gi|326567656|gb|EGE17764.1| NADH dehydrogenase subunit B [Moraxella catarrhalis 12P80B1] gi|326569465|gb|EGE19525.1| NADH dehydrogenase subunit B [Moraxella catarrhalis BC8] gi|326572775|gb|EGE22761.1| NADH dehydrogenase subunit B [Moraxella catarrhalis BC7] Length = 223 Score = 148 bits (374), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 77/144 (53%), Positives = 93/144 (64%), Gaps = 2/144 (1%) Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95 G L L W R SL FG +CC VE +DL RFG RASPRQ+DV Sbjct: 38 GRLSDLTHNLANWGRKNSLWPFNFGTSCCYVEYATTLTGVHDLSRFGAEVIRASPRQADV 97 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155 MIVAGT KMA + R+Y+QM EP++VISMG+CAN GG Y YSVV+G D+I+PVD+Y Sbjct: 98 MIVAGTCFVKMAPVILRLYEQMLEPKWVISMGACANSGGMYDI-YSVVQGVDKILPVDVY 156 Query: 156 VPGCPPTAEALIYGILLLQKKIRR 179 VPGCPP EALI ++LLQ I+ Sbjct: 157 VPGCPPRPEALIQALMLLQNSIQE 180 >gi|238920566|ref|YP_002934081.1| NADH dehydrogenase subunit B [Edwardsiella ictaluri 93-146] gi|269139729|ref|YP_003296430.1| NADH:ubiquinone oxidoreductase 20 kD subunit and related Fe-S oxidoreductase [Edwardsiella tarda EIB202] gi|259514663|sp|C5B8I5|NUOB_EDWI9 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|238870135|gb|ACR69846.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146] gi|267985390|gb|ACY85219.1| NADH:ubiquinone oxidoreductase 20 kD subunit and related Fe-S oxidoreductase [Edwardsiella tarda EIB202] gi|304559596|gb|ADM42260.1| NADH-ubiquinone oxidoreductase chain B [Edwardsiella tarda FL6-60] Length = 224 Score = 148 bits (373), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 72/142 (50%), Positives = 98/142 (69%), Gaps = 2/142 (1%) Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95 G L ++ +V W R SL FGL+CC VEM+ + +D+ RFG RASPRQ+D Sbjct: 40 GKLDHALHDMVNWGRKNSLWPYNFGLSCCYVEMVTSFTAVHDVARFGAEVLRASPRQADF 99 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155 M+VAGT KMA ++R+Y+QM EP++VISMG+CAN GG Y YSVV+G D+ +PVD+Y Sbjct: 100 MVVAGTCFTKMAPVIQRLYEQMLEPKWVISMGACANSGGMYDI-YSVVQGVDKFIPVDVY 158 Query: 156 VPGCPPTAEALIYGILLLQKKI 177 +PGCPP EA + ++LLQ+ I Sbjct: 159 IPGCPPRPEAYMQALMLLQESI 180 >gi|238508138|ref|XP_002385270.1| NADH dehydrogenase, putative [Aspergillus flavus NRRL3357] gi|220688789|gb|EED45141.1| NADH dehydrogenase, putative [Aspergillus flavus NRRL3357] Length = 94 Score = 148 bits (373), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 66/84 (78%), Positives = 76/84 (90%) Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155 M+VAGT+TNKMA ALR+ YDQMP+P++VISMGSCANGGGYYHYSYSVVRG DRIVPVD+Y Sbjct: 1 MVVAGTVTNKMAPALRQCYDQMPDPKWVISMGSCANGGGYYHYSYSVVRGVDRIVPVDVY 60 Query: 156 VPGCPPTAEALIYGILLLQKKIRR 179 +PGCPPT EA +YGI LQKK+R Sbjct: 61 IPGCPPTPEAFLYGIFQLQKKMRH 84 >gi|108758077|ref|YP_630950.1| NADH dehydrogenase subunit B [Myxococcus xanthus DK 1622] gi|123247854|sp|Q1D8S3|NUOB_MYXXD RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|108461957|gb|ABF87142.1| NADH dehydrogenase I, B subunit [Myxococcus xanthus DK 1622] Length = 187 Score = 148 bits (373), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 71/158 (44%), Positives = 107/158 (67%), Gaps = 4/158 (2%) Query: 23 DADFSRISSEITHK--GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLE 80 DAD + I + + G+L + V + + WAR SL + ACC +E M + R+D+ Sbjct: 3 DADLANIVTTRRDESMGWLQSIVSKGLGWARKYSLFTYPYATACCGMEYMSVAASRHDIS 62 Query: 81 RFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS 139 RFG PR SPRQ+D+++V GT+ K A L+RVY+QM EP++V++ G CA+ GG+Y + Sbjct: 63 RFGAEFPRFSPRQADLLMVVGTINLKQAPILKRVYEQMAEPKWVVAFGVCASSGGFYD-N 121 Query: 140 YSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 Y+V++G DRI+PVD+Y+PGCPP E ++ G++LLQ KI Sbjct: 122 YAVLQGIDRIIPVDVYIPGCPPRPEQVLDGLMLLQDKI 159 >gi|294637178|ref|ZP_06715486.1| NADH dehydrogenase I subunit B [Edwardsiella tarda ATCC 23685] gi|291089642|gb|EFE22203.1| NADH dehydrogenase I subunit B [Edwardsiella tarda ATCC 23685] Length = 224 Score = 148 bits (373), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 72/142 (50%), Positives = 98/142 (69%), Gaps = 2/142 (1%) Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95 G L ++ +V W R SL FGL+CC VEM+ + +D+ RFG RASPRQ+D Sbjct: 40 GKLDHALHDMVNWGRKNSLWPYNFGLSCCYVEMVTSFTAVHDVARFGAEVLRASPRQADF 99 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155 M+VAGT KMA ++R+Y+QM EP++VISMG+CAN GG Y YSVV+G D+ +PVD+Y Sbjct: 100 MVVAGTCFTKMAPVIQRLYEQMLEPKWVISMGACANSGGMYDI-YSVVQGVDKFIPVDVY 158 Query: 156 VPGCPPTAEALIYGILLLQKKI 177 +PGCPP EA + ++LLQ+ I Sbjct: 159 IPGCPPRPEAYMQALMLLQESI 180 >gi|298346119|ref|YP_003718806.1| NADH dehydrogenase [Mobiluncus curtisii ATCC 43063] gi|304390121|ref|ZP_07372075.1| NADH-quinone oxidoreductase subunit B [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|315654698|ref|ZP_07907604.1| NADH-quinone oxidoreductase subunit B [Mobiluncus curtisii ATCC 51333] gi|315657378|ref|ZP_07910260.1| NADH-quinone oxidoreductase subunit B [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|298236180|gb|ADI67312.1| NADH dehydrogenase (quinone) [Mobiluncus curtisii ATCC 43063] gi|304326603|gb|EFL93847.1| NADH-quinone oxidoreductase subunit B [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|315491162|gb|EFU80781.1| NADH-quinone oxidoreductase subunit B [Mobiluncus curtisii ATCC 51333] gi|315491850|gb|EFU81459.1| NADH-quinone oxidoreductase subunit B [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 181 Score = 148 bits (373), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 66/137 (48%), Positives = 105/137 (76%), Gaps = 2/137 (1%) Query: 44 DQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTL 102 +++ +AR+ S+ +T GLACCA+EMM + R+D+ RFG R+SPR +DVM+V+G + Sbjct: 14 EKITDFARSLSIWPVTMGLACCAIEMMATAASRFDIARFGSEVFRSSPRHADVMLVSGRV 73 Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162 ++KMA+ +R VYD+M +P++VISMG+CA+ GG ++ +Y++V+GCD +VPVDIY+PGCPP Sbjct: 74 SHKMATIMRNVYDEMADPKWVISMGACASSGGVFN-NYAIVQGCDHVVPVDIYLPGCPPR 132 Query: 163 AEALIYGILLLQKKIRR 179 E L+ +L L+ I++ Sbjct: 133 PEMLLGALLSLRDHIKQ 149 >gi|330881187|gb|EGH15336.1| NADH dehydrogenase subunit B [Pseudomonas syringae pv. glycinea str. race 4] Length = 224 Score = 148 bits (373), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 74/144 (51%), Positives = 97/144 (67%), Gaps = 2/144 (1%) Query: 35 HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQS 93 + G L ++ V W R SL FGL+CC VEM A +D+ RFG R SPRQ+ Sbjct: 38 YMGKLEDVLNGAVNWGRKNSLWPYNFGLSCCYVEMTTAFTAPHDIARFGAEVIRGSPRQA 97 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD 153 D M++AGT KMA ++R+Y+QM EP++VISMGSCAN GG Y YSVV+G D+ +PVD Sbjct: 98 DFMVIAGTCFIKMAPIIQRLYEQMLEPKWVISMGSCANSGGMYDI-YSVVQGVDKFLPVD 156 Query: 154 IYVPGCPPTAEALIYGILLLQKKI 177 +YVPGCPP EA + G++LLQ+ I Sbjct: 157 VYVPGCPPRPEAFLQGLMLLQESI 180 >gi|262376776|ref|ZP_06070004.1| trifunctional NADH dehydrogenase I subunit B/C/D [Acinetobacter lwoffii SH145] gi|262308486|gb|EEY89621.1| trifunctional NADH dehydrogenase I subunit B/C/D [Acinetobacter lwoffii SH145] Length = 226 Score = 148 bits (373), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 76/163 (46%), Positives = 104/163 (63%), Gaps = 5/163 (3%) Query: 20 EKVDADFSRISSEITHKGFLVTSVDQL---VTWARTGSLMWMTFGLACCAVEMMQASMPR 76 E++ + + E+ F+ D + V W R S+ FG +CC VE Sbjct: 19 ERIVVEDPLLEEEVNKNVFMTRLEDVVHTAVNWGRKNSVWPFNFGTSCCYVEYATTLTGV 78 Query: 77 YDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY 135 +DL RFG RASPRQ+D+MIVAGT KMA ++R+Y+QM EP++VISMG+CAN GG Sbjct: 79 HDLSRFGAEVIRASPRQADLMIVAGTCFVKMAPVIQRLYEQMLEPKWVISMGACANSGGM 138 Query: 136 YHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 Y YSVV+G D+I+PVD+Y+PGCPP EALI ++LLQ +I+ Sbjct: 139 YDI-YSVVQGVDKIIPVDVYIPGCPPRPEALIQALMLLQDQIQ 180 >gi|85059578|ref|YP_455280.1| NADH dehydrogenase subunit B [Sodalis glossinidius str. 'morsitans'] gi|123519200|sp|Q2NSK0|NUOB_SODGM RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|84780098|dbj|BAE74875.1| NADH dehydrogenase I subunit B [Sodalis glossinidius str. 'morsitans'] Length = 224 Score = 147 bits (372), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 74/142 (52%), Positives = 96/142 (67%), Gaps = 2/142 (1%) Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95 G L ++ V W R SL FGL+CC VEM + +D+ RFG RASPRQ+D Sbjct: 40 GKLERALHNAVNWGRGNSLWPYNFGLSCCYVEMTTSFTAVHDVARFGSEVIRASPRQADF 99 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155 M+VAGT KMA ++R+YDQM EP++VISMG+CAN GG Y YSVV+G D+ +PVD+Y Sbjct: 100 MVVAGTPFTKMAPVIQRLYDQMLEPKWVISMGACANSGGMYDI-YSVVQGVDKFLPVDVY 158 Query: 156 VPGCPPTAEALIYGILLLQKKI 177 +PGCPP EA I +LLL++ I Sbjct: 159 IPGCPPRPEAYIQALLLLKESI 180 >gi|126640811|ref|YP_001083795.1| NADH dehydrogenase I chain B [Acinetobacter baumannii ATCC 17978] Length = 189 Score = 147 bits (372), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 74/133 (55%), Positives = 93/133 (69%), Gaps = 2/133 (1%) Query: 47 VTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNK 105 V W R SL FG +CC VE +DL RFG RASPRQ+D+MIVAGT K Sbjct: 12 VNWGRKNSLWPFNFGTSCCYVEYATTLTGVHDLSRFGAEVIRASPRQADLMIVAGTCFVK 71 Query: 106 MASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEA 165 MA ++R+Y+QM EP++VISMG+CAN GG Y YSVV+G D+I+PVD+YVPGCPP EA Sbjct: 72 MAPVIQRLYEQMLEPKWVISMGACANSGGMYDI-YSVVQGVDKIIPVDVYVPGCPPRPEA 130 Query: 166 LIYGILLLQKKIR 178 LI ++LLQ +I+ Sbjct: 131 LIQALMLLQDQIQ 143 >gi|221136116|ref|XP_002171279.1| PREDICTED: similar to NADH dehydrogenase (ubiquinone) Fe-S protein 7 [Hydra magnipapillata] Length = 175 Score = 147 bits (372), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 67/144 (46%), Positives = 102/144 (70%), Gaps = 2/144 (1%) Query: 36 KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA-SPRQSD 94 +GF T +DQ+V AR SL + F +CC +E M YDL RFG + SPRQ+D Sbjct: 11 EGFFATKLDQVVGLARANSLWPLPFATSCCGIEFMATMASHYDLARFGSERVSFSPRQAD 70 Query: 95 VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154 +++V GT++ KMA LR+VY+QM EPR+VI++G+CA+ GG + +YSV++G D+++PVD+ Sbjct: 71 MLLVMGTISKKMAPILRQVYEQMSEPRWVIAVGACASSGGIFD-TYSVLQGIDKVIPVDV 129 Query: 155 YVPGCPPTAEALIYGILLLQKKIR 178 YVPGCPP E ++ G++ LQ+ ++ Sbjct: 130 YVPGCPPRPEQIVDGVMQLQELVK 153 >gi|162148253|ref|YP_001602714.1| NADH dehydrogenase subunit B [Gluconacetobacter diazotrophicus PAl 5] gi|209542893|ref|YP_002275122.1| NADH dehydrogenase subunit B [Gluconacetobacter diazotrophicus PAl 5] gi|238065010|sp|A9HN98|NUOB1_GLUDA RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName: Full=NADH dehydrogenase I subunit B 1; AltName: Full=NDH-1 subunit B 1 gi|161786830|emb|CAP56413.1| putative NADH-quinone oxidoreductase chain B [Gluconacetobacter diazotrophicus PAl 5] gi|209530570|gb|ACI50507.1| NADH-quinone oxidoreductase, B subunit [Gluconacetobacter diazotrophicus PAl 5] Length = 211 Score = 147 bits (371), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 69/148 (46%), Positives = 101/148 (68%), Gaps = 2/148 (1%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RAS 89 +E + ++ + V+W + S+ FGL+CC VEM A +YD+ RFG RA+ Sbjct: 21 TETVKRNLVMGRLQDFVSWGQKNSIWPFNFGLSCCYVEMATAFTSKYDIARFGSEVLRAT 80 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PR++D+++++GT+ KMA ++ +YDQM EPR+VISMGSCAN GG Y YSVV+G D Sbjct: 81 PREADLIVISGTVFVKMAPIVKYLYDQMLEPRWVISMGSCANSGGMYDI-YSVVQGVDSF 139 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKI 177 +PVD+YVPGCPP +AL+ G++LLQ + Sbjct: 140 LPVDVYVPGCPPRPDALLEGLMLLQDSV 167 >gi|226944919|ref|YP_002799992.1| NADH dehydrogenase subunit B [Azotobacter vinelandii DJ] gi|259514652|sp|C1DL15|NUOB_AZOVD RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|226719846|gb|ACO79017.1| NADH-ubiquinone oxidoreductase, chain beta [Azotobacter vinelandii DJ] Length = 224 Score = 147 bits (371), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 72/148 (48%), Positives = 99/148 (66%), Gaps = 6/148 (4%) Query: 35 HKGFLVTSVDQL----VTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RAS 89 H+ + ++ + V W R SL FGL+CC VEM A +D+ RFG RAS Sbjct: 34 HRNIFMGKLEDVLSGAVNWGRKNSLWPYNFGLSCCYVEMTTAFTAPHDIARFGAEVIRAS 93 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQ+D M++AGT KMA ++R+Y+QM EP++VISMGSCAN GG Y YSVV+G D+ Sbjct: 94 PRQADFMVIAGTCFIKMAPIIQRLYEQMLEPKWVISMGSCANSGGMYDI-YSVVQGVDKF 152 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKI 177 +P+D+Y+PGCPP EA + G++LLQ+ I Sbjct: 153 LPIDVYIPGCPPRPEAFLQGLMLLQESI 180 >gi|262369334|ref|ZP_06062662.1| NADH dehydrogenase subunit I B [Acinetobacter johnsonii SH046] gi|262315402|gb|EEY96441.1| NADH dehydrogenase subunit I B [Acinetobacter johnsonii SH046] Length = 225 Score = 147 bits (371), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 75/153 (49%), Positives = 101/153 (66%), Gaps = 6/153 (3%) Query: 31 SEITHKGFLVTSVDQL----VTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP 86 E +K +T ++ + V W R S+ FG +CC VE +DL RFG Sbjct: 28 EEEVNKNVFMTRLEDVAHTAVNWGRKNSVWPFNFGTSCCYVEYATTLTGVHDLSRFGAEV 87 Query: 87 -RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRG 145 RASPRQ+D+MIVAGT KMA ++R+Y+QM EP++VISMG+CAN GG Y YSVV+G Sbjct: 88 IRASPRQADLMIVAGTCFVKMAPVIQRLYEQMLEPKWVISMGACANSGGMYDI-YSVVQG 146 Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 D+I+PVD+Y+PGCPP EALI ++LLQ +I+ Sbjct: 147 VDKIIPVDVYIPGCPPRPEALIQALMLLQDQIQ 179 >gi|157371544|ref|YP_001479533.1| NADH dehydrogenase subunit B [Serratia proteamaculans 568] gi|238065214|sp|A8GH15|NUOB_SERP5 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|157323308|gb|ABV42405.1| NADH-quinone oxidoreductase, B subunit [Serratia proteamaculans 568] Length = 224 Score = 147 bits (371), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 71/142 (50%), Positives = 99/142 (69%), Gaps = 2/142 (1%) Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95 G L ++ +V W R S+ FGL+CC VEM+ + +D+ RFG RASPRQ+D+ Sbjct: 40 GKLEHALHDMVNWGRKNSIWPYNFGLSCCYVEMVTSFTAVHDVARFGAEVLRASPRQADL 99 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155 M+VAGT KMA ++R+Y+QM EP++VISMG+CAN GG Y YSVV+G D+ +PVD+Y Sbjct: 100 MVVAGTCFTKMAPVIQRLYEQMLEPKWVISMGACANSGGMYDI-YSVVQGVDKFLPVDVY 158 Query: 156 VPGCPPTAEALIYGILLLQKKI 177 +PGCPP EA + ++LLQ+ I Sbjct: 159 IPGCPPRPEAYMQALMLLQESI 180 >gi|315427038|dbj|BAJ48655.1| NADH dehydrogenase I subunit B [Candidatus Caldiarchaeum subterraneum] Length = 168 Score = 147 bits (371), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 73/134 (54%), Positives = 91/134 (67%), Gaps = 2/134 (1%) Query: 46 LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTN 104 L+ W R SL ACC+VE PRYD ERFG+ P S RQSDV++V GT+T+ Sbjct: 29 LLNWGRMASLFPAHITTACCSVEFAATHSPRYDPERFGWLPATGSLRQSDVLVVEGTVTS 88 Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGCDRIVPVDIYVPGCPPTA 163 KMA LR VYDQMPEP++VI+MG+CA GG Y SY+V++G D I+PVD+YVPGCPP Sbjct: 89 KMAQRLRLVYDQMPEPKWVIAMGACAISGGLYAKDSYNVIQGIDDILPVDVYVPGCPPNP 148 Query: 164 EALIYGILLLQKKI 177 ILLL++KI Sbjct: 149 STFFQAILLLREKI 162 >gi|270262813|ref|ZP_06191084.1| NADH-quinone oxidoreductase subunit B [Serratia odorifera 4Rx13] gi|270043497|gb|EFA16590.1| NADH-quinone oxidoreductase subunit B [Serratia odorifera 4Rx13] Length = 224 Score = 147 bits (371), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 71/142 (50%), Positives = 99/142 (69%), Gaps = 2/142 (1%) Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95 G L ++ +V W R S+ FGL+CC VEM+ + +D+ RFG RASPRQ+D+ Sbjct: 40 GKLEHALHDMVNWGRKNSIWPYNFGLSCCYVEMVTSFTAVHDVARFGAEVLRASPRQADL 99 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155 M+VAGT KMA ++R+Y+QM EP++VISMG+CAN GG Y YSVV+G D+ +PVD+Y Sbjct: 100 MVVAGTCFTKMAPVIQRLYEQMLEPKWVISMGACANSGGMYDI-YSVVQGVDKFLPVDVY 158 Query: 156 VPGCPPTAEALIYGILLLQKKI 177 +PGCPP EA + ++LLQ+ I Sbjct: 159 IPGCPPRPEAYMQALMLLQESI 180 >gi|126666305|ref|ZP_01737284.1| NADH dehydrogenase subunit B [Marinobacter sp. ELB17] gi|126629106|gb|EAZ99724.1| NADH dehydrogenase subunit B [Marinobacter sp. ELB17] Length = 226 Score = 147 bits (371), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 74/145 (51%), Positives = 97/145 (66%), Gaps = 2/145 (1%) Query: 35 HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQS 93 + G L +++ V W R SL FGL+CC VEM A +D+ RFG RASPRQ+ Sbjct: 40 YTGKLKDALNSTVNWGRKNSLWPYNFGLSCCYVEMTTAFTSPHDIARFGAEVIRASPRQA 99 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD 153 D M++AGT KMA ++++YDQM EP++VISMGSCAN GG Y YSVV+G D+ +PVD Sbjct: 100 DFMVIAGTCFVKMAPIIQQLYDQMLEPKWVISMGSCANSGGMYDI-YSVVQGVDKFLPVD 158 Query: 154 IYVPGCPPTAEALIYGILLLQKKIR 178 +YV GCPP EA + G+ LLQ I+ Sbjct: 159 VYVAGCPPRPEAFLQGLQLLQDSIQ 183 >gi|317048938|ref|YP_004116586.1| NADH-quinone oxidoreductase subunit B [Pantoea sp. At-9b] gi|316950555|gb|ADU70030.1| NADH-quinone oxidoreductase, B subunit [Pantoea sp. At-9b] Length = 225 Score = 147 bits (371), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 72/142 (50%), Positives = 97/142 (68%), Gaps = 2/142 (1%) Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95 G L ++ +V W R SL FGL+CC VEM + +D+ RFG RASPRQ+D Sbjct: 41 GKLEHALHDMVNWGRKNSLWPYNFGLSCCYVEMTTSFTAVHDVARFGAEVMRASPRQADF 100 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155 M++AGT KMA ++R+YDQM EP++VISMG+CAN GG Y YSVV+G D+ +PVD+Y Sbjct: 101 MVIAGTPFTKMAPVIQRLYDQMLEPKWVISMGACANSGGMYDI-YSVVQGVDKFLPVDVY 159 Query: 156 VPGCPPTAEALIYGILLLQKKI 177 +PGCPP EA + +LLL++ I Sbjct: 160 IPGCPPRPEAYMQALLLLRESI 181 >gi|290475916|ref|YP_003468811.1| NADH dehydrogenase I subunit B [Xenorhabdus bovienii SS-2004] gi|289175244|emb|CBJ82047.1| NADH dehydrogenase I chain B [Xenorhabdus bovienii SS-2004] Length = 224 Score = 147 bits (371), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 71/142 (50%), Positives = 98/142 (69%), Gaps = 2/142 (1%) Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95 G L ++ +V W R SL FGL+CC VEM+ + +D+ RFG RASPRQ+D Sbjct: 40 GKLEHALHDMVNWGRKNSLWPYNFGLSCCYVEMVTSFTAVHDVARFGAEVLRASPRQADF 99 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155 M+++GT KMA ++R+YDQ+ EP++VISMG+CAN GG Y YSVV+G D+ +PVD+Y Sbjct: 100 MVISGTCFVKMAPVIQRLYDQLLEPKWVISMGACANSGGMYDI-YSVVQGVDKFIPVDVY 158 Query: 156 VPGCPPTAEALIYGILLLQKKI 177 +PGCPP EA + +LLLQ+ I Sbjct: 159 IPGCPPRPEAYMQALLLLQESI 180 >gi|300114494|ref|YP_003761069.1| NADH-quinone oxidoreductase subunit B [Nitrosococcus watsonii C-113] gi|299540431|gb|ADJ28748.1| NADH-quinone oxidoreductase, B subunit [Nitrosococcus watsonii C-113] Length = 212 Score = 147 bits (370), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 79/172 (45%), Positives = 113/172 (65%), Gaps = 6/172 (3%) Query: 9 KIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVE 68 ++ Q++ S+E+ F + + L + LV W R SL FGL+CC VE Sbjct: 4 RLSKPQTAASVEQSKGSFE----DAIRRNLLFARLQDLVAWGRKNSLWPYNFGLSCCYVE 59 Query: 69 MMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMG 127 M + +YD+ RFG RA+PR++D+M+++GT+ KMA ++R+Y+QM EPR+VISMG Sbjct: 60 MATSFTSKYDIARFGAEVIRATPREADLMVISGTVFIKMAPVIKRLYEQMMEPRWVISMG 119 Query: 128 SCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179 SCAN GG Y YSVV+G D+ +PVD+YVPGCPP +AL+ G+LLLQ+ I R Sbjct: 120 SCANSGGMYDI-YSVVQGVDKFLPVDVYVPGCPPRPDALLEGLLLLQEAIGR 170 >gi|290559400|gb|EFD92732.1| NADH-quinone oxidoreductase, B subunit [Candidatus Parvarchaeum acidophilus ARMAN-5] Length = 172 Score = 147 bits (370), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 66/138 (47%), Positives = 94/138 (68%), Gaps = 1/138 (0%) Query: 43 VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFG-FAPRASPRQSDVMIVAGT 101 +D ++ W R+ SL +TFG +CCA+EMM + D +R G SPRQSD+++V+GT Sbjct: 24 IDTVLNWGRSNSLWPLTFGTSCCAIEMMTFGATKVDSDRLGVLFVGDSPRQSDLILVSGT 83 Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP 161 +T KMA L VY+QMP+P+YVI++G+C GG YH SY+ + G DRI+PVD +VPGCPP Sbjct: 84 ITKKMARRLLNVYEQMPDPKYVIAVGACNISGGLYHDSYNTIDGIDRIMPVDAFVPGCPP 143 Query: 162 TAEALIYGILLLQKKIRR 179 E + + +LQK I+ Sbjct: 144 RPEEFLDAVRVLQKLIKE 161 >gi|90425545|ref|YP_533915.1| NADH-quinone oxidoreductase, B subunit [Rhodopseudomonas palustris BisB18] gi|122475341|sp|Q20Z40|NUOB2_RHOPB RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName: Full=NADH dehydrogenase I subunit B 2; AltName: Full=NDH-1 subunit B 2 gi|90107559|gb|ABD89596.1| NADH-quinone oxidoreductase, B subunit [Rhodopseudomonas palustris BisB18] Length = 205 Score = 147 bits (370), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 75/163 (46%), Positives = 108/163 (66%), Gaps = 4/163 (2%) Query: 16 SCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMP 75 S +L++ D S E + L ++ LV W+R SL FGL+CC VE + A Sbjct: 2 SYTLQRPGEDIS--VEEHMARTSLFARLEDLVAWSRKNSLWPFNFGLSCCYVEQVTALTS 59 Query: 76 RYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGG 134 YD RFG RASPRQ+D+++V+GT+ +KMA+ L R+Y+QM PR+VISMG+CAN GG Sbjct: 60 VYDQARFGAEVIRASPRQADLLVVSGTVFHKMAAPLLRLYEQMRAPRWVISMGACANSGG 119 Query: 135 YYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 Y YSVV+G D +PVD+Y+PGCPP EA++ +++LQ+++ Sbjct: 120 MYDI-YSVVQGVDSFLPVDVYIPGCPPRPEAVLDALIMLQQQV 161 >gi|326799001|ref|YP_004316820.1| NAD(P)H-quinone oxidoreductase subunit K [Sphingobacterium sp. 21] gi|326549765|gb|ADZ78150.1| NAD(P)H-quinone oxidoreductase subunit K [Sphingobacterium sp. 21] Length = 183 Score = 146 bits (369), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 69/147 (46%), Positives = 99/147 (67%), Gaps = 2/147 (1%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPR 91 +T GF T++D+ V AR SL + F +CC +E M YDL RFG P SPR Sbjct: 13 VTGSGFFATTLDKAVGLARANSLWPLPFATSCCGIEFMATMGATYDLARFGAERPSFSPR 72 Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151 QSD+++V GT+ KM L++VY QM EPR+VI++G+CA+ GG + +YSV++G D ++P Sbjct: 73 QSDMLLVMGTIAKKMGPVLKQVYIQMAEPRWVIAVGACASSGGIFD-TYSVLQGIDEVIP 131 Query: 152 VDIYVPGCPPTAEALIYGILLLQKKIR 178 VD+YVPGCPP EA++ G++ LQ +R Sbjct: 132 VDVYVPGCPPRPEAILDGVMRLQDIVR 158 >gi|296124090|ref|YP_003631868.1| NADH-quinone oxidoreductase, subunit beta [Planctomyces limnophilus DSM 3776] gi|296016430|gb|ADG69669.1| NADH-quinone oxidoreductase, B subunit [Planctomyces limnophilus DSM 3776] Length = 230 Score = 146 bits (369), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 70/147 (47%), Positives = 100/147 (68%), Gaps = 2/147 (1%) Query: 39 LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMI 97 +T+++ +WAR SL M F ACC +E+M + R+DL RFG R SPRQ D+MI Sbjct: 34 FLTTLNAASSWARKNSLWPMPFATACCGIELMATASSRHDLARFGAEVMRFSPRQCDLMI 93 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAG + KM L+R++ QMPEP++ ISMG+CA GG + +Y+VV+G DR +PVD+YVP Sbjct: 94 VAGRVAMKMMPVLQRIWLQMPEPKWCISMGACACTGGVFD-TYAVVQGIDRFIPVDLYVP 152 Query: 158 GCPPTAEALIYGILLLQKKIRRVGNVK 184 GCPP E LI GI+ +Q +++ G ++ Sbjct: 153 GCPPRPEQLIAGIMQIQDLVQKTGTMQ 179 >gi|39937323|ref|NP_949599.1| NADH dehydrogenase subunit B [Rhodopseudomonas palustris CGA009] gi|192293103|ref|YP_001993708.1| NADH dehydrogenase subunit B [Rhodopseudomonas palustris TIE-1] gi|81619355|sp|Q6N1Y9|NUOB2_RHOPA RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName: Full=NADH dehydrogenase I subunit B 2; AltName: Full=NDH-1 subunit B 2 gi|238065035|sp|B3Q6T4|NUOB2_RHOPT RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName: Full=NADH dehydrogenase I subunit B 2; AltName: Full=NDH-1 subunit B 2 gi|39651181|emb|CAE29704.1| NADH-ubiquinone dehydrogenase chain B [Rhodopseudomonas palustris CGA009] gi|192286852|gb|ACF03233.1| NADH-quinone oxidoreductase, B subunit [Rhodopseudomonas palustris TIE-1] Length = 208 Score = 146 bits (369), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 72/154 (46%), Positives = 103/154 (66%), Gaps = 2/154 (1%) Query: 25 DFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF 84 D R E L T+++ L W+R SL FGL+CC VE + P YD RFG Sbjct: 12 DEQRSVEEHMALSSLFTTLEDLTAWSRKHSLWPFNFGLSCCYVEQVTVLTPVYDQARFGA 71 Query: 85 AP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVV 143 RASPRQ+D+++V+GT+ +KMA+ L R+Y+QM PR+VI+MG+CA GG Y YSVV Sbjct: 72 EVIRASPRQADLLVVSGTVFHKMAAPLLRLYEQMRAPRWVIAMGACACSGGMYDI-YSVV 130 Query: 144 RGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 +G DR +PVD+Y+PGCPP EA++ +++LQ+++ Sbjct: 131 QGVDRFIPVDVYIPGCPPRPEAVLDALIMLQQQV 164 >gi|300771676|ref|ZP_07081551.1| NADH-quinone oxidoreductase subunit B [Sphingobacterium spiritivorum ATCC 33861] gi|300761665|gb|EFK58486.1| NADH-quinone oxidoreductase subunit B [Sphingobacterium spiritivorum ATCC 33861] Length = 184 Score = 146 bits (369), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 68/148 (45%), Positives = 100/148 (67%), Gaps = 2/148 (1%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPR 91 + GF T++D+ + AR SL + F +CC +E M YDL RFG P SPR Sbjct: 13 VEGSGFFATTLDKAIGLARANSLWPLPFATSCCGIEFMATMGSTYDLARFGAERPSFSPR 72 Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151 Q+D+++V GT+ KMA L++VY QM EPR+VI++G+CA+ GG + +YSV++G D I+P Sbjct: 73 QADMLLVMGTIAKKMAPVLKQVYVQMAEPRWVIAVGACASSGGIFD-TYSVLQGIDEIIP 131 Query: 152 VDIYVPGCPPTAEALIYGILLLQKKIRR 179 VD+YVPGCPP EA++ G+L LQ+ ++ Sbjct: 132 VDVYVPGCPPRPEAILDGVLRLQEIVKN 159 >gi|316935784|ref|YP_004110766.1| NADH-quinone oxidoreductase subunit B [Rhodopseudomonas palustris DX-1] gi|315603498|gb|ADU46033.1| NADH-quinone oxidoreductase, B subunit [Rhodopseudomonas palustris DX-1] Length = 208 Score = 146 bits (369), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 69/140 (49%), Positives = 100/140 (71%), Gaps = 2/140 (1%) Query: 39 LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMI 97 L T+++ L W+R SL FGL+CC VE + P YD RFG RASPRQ+D+++ Sbjct: 26 LFTTLEDLTAWSRKHSLWPFNFGLSCCYVEQVTVLTPVYDQARFGAEVIRASPRQADLLV 85 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 V+GT+ +KMA+ L R+Y+QM PR+VI+MG+CA GG Y YSVV+G DR +PVD+Y+P Sbjct: 86 VSGTVFHKMAAPLLRLYEQMRAPRWVIAMGACACSGGMYDI-YSVVQGVDRFIPVDVYIP 144 Query: 158 GCPPTAEALIYGILLLQKKI 177 GCPP EA++ +++LQ+++ Sbjct: 145 GCPPRPEAVLDALIMLQQQV 164 >gi|227535970|ref|ZP_03966019.1| NADH dehydrogenase I, chain B [Sphingobacterium spiritivorum ATCC 33300] gi|227244213|gb|EEI94228.1| NADH dehydrogenase I, chain B [Sphingobacterium spiritivorum ATCC 33300] Length = 184 Score = 146 bits (369), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 68/148 (45%), Positives = 100/148 (67%), Gaps = 2/148 (1%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPR 91 + GF T++D+ + AR SL + F +CC +E M YDL RFG P SPR Sbjct: 13 VEGSGFFATTLDKAIGLARANSLWPLPFATSCCGIEFMATMGSTYDLARFGAERPSFSPR 72 Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151 Q+D+++V GT+ KMA L++VY QM EPR+VI++G+CA+ GG + +YSV++G D I+P Sbjct: 73 QADMLLVMGTIAKKMAPVLKQVYVQMAEPRWVIAVGACASSGGIFD-TYSVLQGIDEIIP 131 Query: 152 VDIYVPGCPPTAEALIYGILLLQKKIRR 179 VD+YVPGCPP EA++ G+L LQ+ ++ Sbjct: 132 VDVYVPGCPPRPEAILDGVLRLQEIVKN 159 >gi|271501267|ref|YP_003334292.1| NADH-quinone oxidoreductase subunit B [Dickeya dadantii Ech586] gi|307131813|ref|YP_003883829.1| NADH:ubiquinone oxidoreductase subunit B [Dickeya dadantii 3937] gi|270344822|gb|ACZ77587.1| NADH-quinone oxidoreductase, B subunit [Dickeya dadantii Ech586] gi|306529342|gb|ADM99272.1| NADH:ubiquinone oxidoreductase, chain B [Dickeya dadantii 3937] Length = 224 Score = 146 bits (368), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 73/142 (51%), Positives = 97/142 (68%), Gaps = 2/142 (1%) Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95 G L S+ +V W R+ SL FGL+CC VEM + +D+ RFG RASPRQ+D Sbjct: 40 GNLEQSLHSMVNWGRSNSLWPYNFGLSCCYVEMATSFTSVHDVARFGSEVIRASPRQADF 99 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155 M+VAGT KMA ++R+YDQM P++VISMG+CAN GG Y YSVV+G D+ +PVD+Y Sbjct: 100 MVVAGTPFLKMAPVIQRLYDQMLAPKWVISMGACANSGGMYDI-YSVVQGVDKFLPVDVY 158 Query: 156 VPGCPPTAEALIYGILLLQKKI 177 +PGCPP EA + +LLL++ I Sbjct: 159 IPGCPPRPEAYMQALLLLKESI 180 >gi|308746024|ref|YP_003934562.1| NADH-plastoquinone oxidoreductase subunit K [Cheilanthes lindheimeri] gi|302375457|gb|ADL29831.1| NADH-plastoquinone oxidoreductase subunit K [Cheilanthes lindheimeri] Length = 250 Score = 146 bits (368), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 65/142 (45%), Positives = 96/142 (67%), Gaps = 1/142 (0%) Query: 39 LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIV 98 + S+ +R SL + +G +CC +E R+D +R+G PR+SPRQ+D+++ Sbjct: 42 FLASISDFSNRSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLIVT 101 Query: 99 AGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPVDIYVP 157 AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++PVDI++P Sbjct: 102 AGTITMKMAPSLIRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDIHLP 161 Query: 158 GCPPTAEALIYGILLLQKKIRR 179 GCPP EA+ + L+KKI R Sbjct: 162 GCPPKPEAITDAVTKLRKKIAR 183 >gi|261820793|ref|YP_003258899.1| NADH dehydrogenase subunit B [Pectobacterium wasabiae WPP163] gi|261604806|gb|ACX87292.1| NADH-quinone oxidoreductase, B subunit [Pectobacterium wasabiae WPP163] Length = 224 Score = 146 bits (368), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 72/142 (50%), Positives = 97/142 (68%), Gaps = 2/142 (1%) Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95 G L ++ V W R SL FGL+CC VEM+ + +D+ RFG RASPRQ+D Sbjct: 40 GKLEHALHDTVNWGRQNSLWPYNFGLSCCYVEMVTSFTAVHDVARFGAEVLRASPRQADF 99 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155 M+VAGT KMA ++R+Y+QM EP++VISMG+CAN GG Y YSVV+G D+ +PVD+Y Sbjct: 100 MVVAGTCFTKMAPVIQRLYEQMLEPKWVISMGACANSGGMYDI-YSVVQGVDKFLPVDVY 158 Query: 156 VPGCPPTAEALIYGILLLQKKI 177 +PGCPP EA + +LLL++ I Sbjct: 159 IPGCPPRPEAYMQALLLLKESI 180 >gi|118579068|ref|YP_900318.1| NADH-quinone oxidoreductase subunit B [Pelobacter propionicus DSM 2379] gi|118580047|ref|YP_901297.1| NADH-quinone oxidoreductase subunit B [Pelobacter propionicus DSM 2379] gi|118581593|ref|YP_902843.1| NADH-quinone oxidoreductase subunit B [Pelobacter propionicus DSM 2379] gi|218528002|sp|A1ALP0|NUOB_PELPD RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|118501778|gb|ABK98260.1| NADH dehydrogenase subunit B [Pelobacter propionicus DSM 2379] gi|118502757|gb|ABK99239.1| NADH dehydrogenase subunit B [Pelobacter propionicus DSM 2379] gi|118504303|gb|ABL00786.1| NADH dehydrogenase subunit B [Pelobacter propionicus DSM 2379] Length = 163 Score = 146 bits (368), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 69/141 (48%), Positives = 98/141 (69%), Gaps = 2/141 (1%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQSDVM 96 +L T D+L+ W R S+ F ACC +E M + YD +RFG A PR +PRQSD++ Sbjct: 6 YLTTRKDELIGWVRKFSIFPYPFVTACCGMEFMAVASTLYDTDRFGAALPRFTPRQSDLL 65 Query: 97 IVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV 156 +V GT+T+K A ++RVYDQM +P++V++ G+CA GG Y +Y+V++G DRI+PVDIY+ Sbjct: 66 MVVGTITHKEAPVIKRVYDQMCDPKWVMAFGACATSGGVYR-NYTVLQGVDRIIPVDIYI 124 Query: 157 PGCPPTAEALIYGILLLQKKI 177 PGCPP E +I I+ LQ KI Sbjct: 125 PGCPPRPEMVIDAIMKLQDKI 145 >gi|251789015|ref|YP_003003736.1| NADH dehydrogenase subunit B [Dickeya zeae Ech1591] gi|247537636|gb|ACT06257.1| NADH-quinone oxidoreductase, B subunit [Dickeya zeae Ech1591] Length = 224 Score = 146 bits (368), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 73/142 (51%), Positives = 97/142 (68%), Gaps = 2/142 (1%) Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95 G L S+ +V W R+ SL FGL+CC VEM + +D+ RFG RASPRQ+D Sbjct: 40 GNLEQSLHSMVNWGRSNSLWPYNFGLSCCYVEMATSFTSVHDVARFGSEVIRASPRQADF 99 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155 M+VAGT KMA ++R+YDQM P++VISMG+CAN GG Y YSVV+G D+ +PVD+Y Sbjct: 100 MVVAGTPFLKMAPVIQRLYDQMLAPKWVISMGACANSGGMYDI-YSVVQGVDKFLPVDVY 158 Query: 156 VPGCPPTAEALIYGILLLQKKI 177 +PGCPP EA + +LLL++ I Sbjct: 159 IPGCPPRPEAYMQALLLLKESI 180 >gi|227112326|ref|ZP_03825982.1| NADH dehydrogenase subunit B [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 224 Score = 146 bits (368), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 72/142 (50%), Positives = 97/142 (68%), Gaps = 2/142 (1%) Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95 G L ++ V W R SL FGL+CC VEM+ + +D+ RFG RASPRQ+D Sbjct: 40 GKLEHALHDTVNWGRQNSLWPYNFGLSCCYVEMVTSFTAVHDVARFGAEVLRASPRQADF 99 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155 M+VAGT KMA ++R+Y+QM EP++VISMG+CAN GG Y YSVV+G D+ +PVD+Y Sbjct: 100 MVVAGTCFTKMAPVIQRLYEQMLEPKWVISMGACANSGGMYDI-YSVVQGVDKFLPVDVY 158 Query: 156 VPGCPPTAEALIYGILLLQKKI 177 +PGCPP EA + +LLL++ I Sbjct: 159 IPGCPPRPEAYMQALLLLKESI 180 >gi|50121950|ref|YP_051117.1| NADH dehydrogenase subunit B [Pectobacterium atrosepticum SCRI1043] gi|227326166|ref|ZP_03830190.1| NADH dehydrogenase subunit B [Pectobacterium carotovorum subsp. carotovorum WPP14] gi|253689147|ref|YP_003018337.1| NADH-quinone oxidoreductase, B subunit [Pectobacterium carotovorum subsp. carotovorum PC1] gi|6647661|sp|O85274|NUOB_PECCC RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|81644464|sp|Q6D2R8|NUOB_ERWCT RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|259514671|sp|C6DA45|NUOB_PECCP RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|3273736|gb|AAC38641.1| NADH dehydrogenase chain B [Pectobacterium carotovorum subsp. carotovorum] gi|49612476|emb|CAG75926.1| NADH-quinone oxidoreductase chain B [Pectobacterium atrosepticum SCRI1043] gi|251755725|gb|ACT13801.1| NADH-quinone oxidoreductase, B subunit [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 224 Score = 145 bits (367), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 72/142 (50%), Positives = 97/142 (68%), Gaps = 2/142 (1%) Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95 G L ++ V W R SL FGL+CC VEM+ + +D+ RFG RASPRQ+D Sbjct: 40 GKLEHALHDTVNWGRQNSLWPYNFGLSCCYVEMVTSFTAVHDVARFGAEVLRASPRQADF 99 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155 M+VAGT KMA ++R+Y+QM EP++VISMG+CAN GG Y YSVV+G D+ +PVD+Y Sbjct: 100 MVVAGTCFTKMAPVIQRLYEQMLEPKWVISMGACANSGGMYDI-YSVVQGVDKFLPVDVY 158 Query: 156 VPGCPPTAEALIYGILLLQKKI 177 +PGCPP EA + +LLL++ I Sbjct: 159 IPGCPPRPEAYMQALLLLKESI 180 >gi|146299005|ref|YP_001193596.1| NADH-quinone oxidoreductase, B subunit [Flavobacterium johnsoniae UW101] gi|238065144|sp|A5FKI9|NUOB_FLAJ1 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|146153423|gb|ABQ04277.1| NADH dehydrogenase subunit B [Flavobacterium johnsoniae UW101] Length = 182 Score = 145 bits (367), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 66/147 (44%), Positives = 103/147 (70%), Gaps = 2/147 (1%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA-SPR 91 +T +GF T ++ +V AR SL + F +CC +E M YDL RFG + SPR Sbjct: 15 LTGEGFFATKLNDVVGLARANSLWPLPFATSCCGIEFMATMAAHYDLARFGSERVSFSPR 74 Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151 Q+D+++V GT++ KMA LR+VY+QM EPR+VI++G+CA+ GG + +YSV++G D+++P Sbjct: 75 QADMLLVMGTISKKMAPILRQVYEQMSEPRWVIAVGACASSGGVFD-TYSVLQGIDKVIP 133 Query: 152 VDIYVPGCPPTAEALIYGILLLQKKIR 178 VD+YVPGCPP E ++ G++ LQ+ ++ Sbjct: 134 VDVYVPGCPPRPEQIVDGVMRLQELVK 160 >gi|66219963|gb|AAY42996.1| Nqo6 [Rhodothermus marinus] Length = 169 Score = 145 bits (367), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 69/124 (55%), Positives = 95/124 (76%), Gaps = 2/124 (1%) Query: 56 MWMTFGLACCAVEMMQASMPRYDLERFGF-APRASPRQSDVMIVAGTLTNKMASALRRVY 114 M M GLACCA+EMM + P+YD+ RFG A R SPRQ+D+MIVAG + KMA A+RRV+ Sbjct: 1 MPMPMGLACCAIEMMAFAGPKYDVARFGSEAMRFSPRQADLMIVAGWCSYKMAHAIRRVW 60 Query: 115 DQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQ 174 DQMP+P++ I+MG+CA+ GG H Y VV+G D +PVD+Y+PGCPP EA+++ ++ +Q Sbjct: 61 DQMPDPKWCIAMGACASTGG-MHRCYGVVQGVDNFLPVDVYIPGCPPRPEAVLHALMDIQ 119 Query: 175 KKIR 178 +KIR Sbjct: 120 EKIR 123 >gi|284042616|ref|YP_003392956.1| NADH-quinone oxidoreductase, B subunit [Conexibacter woesei DSM 14684] gi|283946837|gb|ADB49581.1| NADH-quinone oxidoreductase, B subunit [Conexibacter woesei DSM 14684] Length = 229 Score = 145 bits (367), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 70/140 (50%), Positives = 102/140 (72%), Gaps = 3/140 (2%) Query: 39 LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APRASPRQSDVMI 97 L T++D++ WAR S+ TFGLACCA+EMM R D+ RFGF A RASPRQ+D++I Sbjct: 49 LTTTLDKVTAWARGNSMFPATFGLACCAIEMMSLPGARLDIGRFGFEAFRASPRQADMLI 108 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 ++G ++ KMA +RR+YDQM EPR+ ISMG+C + G ++ +Y++V D+ +P+D++VP Sbjct: 109 LSGRVSIKMAPIVRRIYDQMLEPRWAISMGACCSSMGVFN-NYALV-PADKFMPIDVHVP 166 Query: 158 GCPPTAEALIYGILLLQKKI 177 GCPP EAL + IL L+ K+ Sbjct: 167 GCPPRPEALAHAILKLRSKV 186 >gi|218660809|ref|ZP_03516739.1| NADH-ubiquinone oxidoreductase protein, chain B [Rhizobium etli IE4771] Length = 118 Score = 145 bits (367), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 67/104 (64%), Positives = 86/104 (82%), Gaps = 1/104 (0%) Query: 76 RYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY 135 RYDL+RFG R SPRQSDVMI+AGT+T K A +RR+YDQMPEPR+VI+MG+CA GG Sbjct: 1 RYDLDRFGVVFRPSPRQSDVMIIAGTVTRKFAPVVRRLYDQMPEPRWVIAMGTCAISGGV 60 Query: 136 YHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179 Y+ +Y+VV+G + VPVD++VPGCPP EAL++G LLLQ+KI+R Sbjct: 61 YN-TYAVVQGSETFVPVDVHVPGCPPRPEALMHGFLLLQEKIKR 103 >gi|303247493|ref|ZP_07333765.1| NADH-quinone oxidoreductase, B subunit [Desulfovibrio fructosovorans JJ] gi|302491189|gb|EFL51081.1| NADH-quinone oxidoreductase, B subunit [Desulfovibrio fructosovorans JJ] Length = 178 Score = 145 bits (367), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 68/139 (48%), Positives = 100/139 (71%), Gaps = 3/139 (2%) Query: 42 SVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAG 100 +V ++V R S+ MTFG+ACCA+EMM M R+D+ RFG R SPRQSD+MIVAG Sbjct: 26 AVQKIVDVCRAMSIWPMTFGIACCAIEMMAVGMARFDIARFGAEVFRPSPRQSDLMIVAG 85 Query: 101 TLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS--YSVVRGCDRIVPVDIYVPG 158 T+ K+A + R+++QMP PR+V+++G+CA GG ++ Y+VV+G D ++PVD+YVPG Sbjct: 86 TVNKKLAPLVVRLFEQMPAPRFVMALGNCAISGGPFNIEGQYNVVQGVDTLIPVDVYVPG 145 Query: 159 CPPTAEALIYGILLLQKKI 177 CPP E L+ G+ +Q+K+ Sbjct: 146 CPPRPEGLLEGLFAIQQKM 164 >gi|295798101|emb|CAX68920.1| NADH:quinone oxidoreductase, subunit PSST/NdhK/NuoB [uncultured bacterium] Length = 155 Score = 145 bits (366), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 67/144 (46%), Positives = 100/144 (69%), Gaps = 2/144 (1%) Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQSDV 95 ++ + V+ L+ WAR SL F ACC +E M S +DL+RFG A PR SPRQ+DV Sbjct: 8 NYITSRVNDLLGWARKYSLFQYPFVTACCGMEYMSVSCAHHDLDRFGAAFPRFSPRQADV 67 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155 ++V GT+++K+A LR VYDQM +P++V++ G C GG+Y +Y+ V+G D I+PVD+Y Sbjct: 68 LLVVGTISHKLAPVLRNVYDQMCDPKWVVAFGVCTCTGGFYD-NYATVQGIDTILPVDVY 126 Query: 156 VPGCPPTAEALIYGILLLQKKIRR 179 +PGCPP E ++ G++ LQ+KI+ Sbjct: 127 IPGCPPRPENVLDGLMRLQEKIQN 150 >gi|297625729|ref|YP_003687492.1| NADH-quinone oxidoreductase chain B [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296921494|emb|CBL56048.1| NADH-quinone oxidoreductase chain B [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 185 Score = 145 bits (365), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 69/146 (47%), Positives = 100/146 (68%), Gaps = 2/146 (1%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RAS 89 E G +T+V+Q+ W R S +T GLACCA+EM+ PR D R+G RAS Sbjct: 4 EEKLPAGIFLTTVEQVQGWMRQASFWPLTMGLACCAIEMISYGGPRADCSRWGQEIFRAS 63 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQ+D+MIVAG + K+A +R+++DQMP P++ I+MG+CA+ GG ++ +Y+VV+G D I Sbjct: 64 PRQADLMIVAGRVGQKLAPVVRQLWDQMPNPKWCIAMGACASSGGVFN-NYAVVQGVDHI 122 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQK 175 VPVD+Y+PGCPP + LI + L+K Sbjct: 123 VPVDMYLPGCPPRPDMLIDAVFKLKK 148 >gi|150026262|ref|YP_001297088.1| NADH dehydrogenase I, B subunit [Flavobacterium psychrophilum JIP02/86] gi|238065145|sp|A6H1R3|NUOB_FLAPJ RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|149772803|emb|CAL44287.1| NADH dehydrogenase I, B subunit [Flavobacterium psychrophilum JIP02/86] Length = 181 Score = 145 bits (365), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 65/147 (44%), Positives = 103/147 (70%), Gaps = 2/147 (1%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA-SPR 91 +T +GF T ++ +V AR S+ + F +CC +E M YDL RFG + SPR Sbjct: 14 VTGEGFFATKLNDVVGLARANSMWPLPFATSCCGIEFMATMASHYDLARFGSERVSFSPR 73 Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151 Q+D+++V GT++ KMA LR+VY+QM EPR+VI++G+CA+ GG + +YSV++G D+++P Sbjct: 74 QADMLMVMGTISKKMAPILRQVYEQMAEPRWVIAVGACASSGGIFD-TYSVLQGIDKVIP 132 Query: 152 VDIYVPGCPPTAEALIYGILLLQKKIR 178 VD+YVPGCPP E ++ G++ LQ+ ++ Sbjct: 133 VDVYVPGCPPRPEQIVDGVMRLQELVK 159 >gi|110637786|ref|YP_677993.1| NADH dehydrogenase subunit B [Cytophaga hutchinsonii ATCC 33406] gi|123163626|sp|Q11VB3|NUOB2_CYTH3 RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName: Full=NADH dehydrogenase I subunit B 2; AltName: Full=NDH-1 subunit B 2 gi|110280467|gb|ABG58653.1| NADH dehydrogenase subunit B [Cytophaga hutchinsonii ATCC 33406] Length = 181 Score = 145 bits (365), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 66/139 (47%), Positives = 95/139 (68%), Gaps = 2/139 (1%) Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQSDV 95 GF TS+D ++ AR SL + F +CC +E M YD+ RFG P SPRQ+DV Sbjct: 17 GFFATSLDSVIGLARKNSLWPLPFATSCCGIEFMATMASTYDIARFGAERPSFSPRQADV 76 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155 ++V GT+ KM LR VY+QM EP++V+++G+CA+ GG + +YSV++G DRI+PVD+Y Sbjct: 77 LLVMGTIAKKMGPVLRHVYEQMAEPKWVVAVGACASSGGIFD-TYSVLQGIDRIIPVDVY 135 Query: 156 VPGCPPTAEALIYGILLLQ 174 VPGCPP E +I G++ +Q Sbjct: 136 VPGCPPRPEQIIQGLMRVQ 154 >gi|269986278|gb|EEZ92586.1| NADH-quinone oxidoreductase, B subunit [Candidatus Parvarchaeum acidiphilum ARMAN-4] Length = 172 Score = 144 bits (364), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 63/138 (45%), Positives = 94/138 (68%), Gaps = 1/138 (0%) Query: 43 VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA-SPRQSDVMIVAGT 101 ++ ++ W R+ SL +TFG +CCA+EMM + D +R G SPRQSD+++V+GT Sbjct: 24 INTVLNWGRSNSLWPLTFGTSCCAIEMMTFGATKVDADRLGVLFNGDSPRQSDLILVSGT 83 Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP 161 +T KMA L VY+Q+P+P+YVI++G+C GG YH SY+ + G DRI+PVD ++PGCPP Sbjct: 84 ITKKMARRLLNVYEQIPDPKYVIAVGACNVSGGLYHDSYNTIEGIDRIMPVDAFIPGCPP 143 Query: 162 TAEALIYGILLLQKKIRR 179 E + + +LQK I+ Sbjct: 144 RPEEFLDAVRVLQKLIKE 161 >gi|157736575|ref|YP_001489258.1| NADH-quinone oxidoreductase, B subunit [Arcobacter butzleri RM4018] gi|315635738|ref|ZP_07891001.1| NADH-quinone oxidoreductase subunit B [Arcobacter butzleri JV22] gi|238065055|sp|A8ERL5|NUOB_ARCB4 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|157698429|gb|ABV66589.1| NADH-quinone oxidoreductase, B subunit [Arcobacter butzleri RM4018] gi|315480035|gb|EFU70705.1| NADH-quinone oxidoreductase subunit B [Arcobacter butzleri JV22] Length = 171 Score = 144 bits (364), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 69/148 (46%), Positives = 100/148 (67%), Gaps = 2/148 (1%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APRASPRQSDVM 96 + T +D V W R+ SL M FG ACC +E M + +YD+ RFG R SPRQ+D++ Sbjct: 13 IVTTRLDHAVNWGRSYSLWPMAFGTACCGIEFMAVAGAKYDVSRFGAEVVRFSPRQADLL 72 Query: 97 IVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV 156 IVAGT++ K A L+++Y+QM EP++VISMG+CA GG+Y +Y+ V+G D I+PVD YV Sbjct: 73 IVAGTISYKQAPILKKIYEQMCEPKWVISMGACACSGGFYD-NYTTVQGIDEIIPVDEYV 131 Query: 157 PGCPPTAEALIYGILLLQKKIRRVGNVK 184 GCPP EA++ I+ +Q+K + +K Sbjct: 132 AGCPPRPEAVLDAIMRIQEKAKTESIIK 159 >gi|292492188|ref|YP_003527627.1| NADH-quinone oxidoreductase subunit beta [Nitrosococcus halophilus Nc4] gi|291580783|gb|ADE15240.1| NADH-quinone oxidoreductase, B subunit [Nitrosococcus halophilus Nc4] Length = 212 Score = 144 bits (363), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 76/165 (46%), Positives = 110/165 (66%), Gaps = 6/165 (3%) Query: 14 QSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQAS 73 +++ S+E+ F + + L + L+ W R S+ FGL+CC VEM + Sbjct: 9 KTAASIEQSKGSFE----DAIRRNLLFARLQDLIAWGRKNSIWPFNFGLSCCYVEMATSF 64 Query: 74 MPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANG 132 +YDL RFG RA+PR++D+M+++GT+ KMA ++R+Y+QM EPR+VISMGSCAN Sbjct: 65 TSKYDLGRFGSEIIRATPREADLMVISGTVFIKMAPVIKRLYEQMMEPRWVISMGSCANS 124 Query: 133 GGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 GG Y YSVV+G D+ +PVD+YVPGCPP +AL+ G+LLLQ+ I Sbjct: 125 GGMYDI-YSVVQGVDKFLPVDVYVPGCPPRPDALLEGLLLLQEAI 168 >gi|312131895|ref|YP_003999235.1| NADH dehydrogenase subunit b [Leadbetterella byssophila DSM 17132] gi|311908441|gb|ADQ18882.1| NADH dehydrogenase subunit B [Leadbetterella byssophila DSM 17132] Length = 185 Score = 144 bits (363), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 66/140 (47%), Positives = 99/140 (70%), Gaps = 2/140 (1%) Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQSDV 95 GF TS+D+++ AR+ SL + F +CC +E M YD+ RFG P SPRQSDV Sbjct: 17 GFFATSLDKVIGLARSHSLWPLPFATSCCGIEFMATMGAHYDISRFGAERPSFSPRQSDV 76 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155 ++V GT+ KMA +++VY QM EPR+VI++G+CA+ GG + +YSV++G DR++PVD+Y Sbjct: 77 LLVMGTIAKKMAPVVKQVYLQMAEPRWVIAVGACASSGGIFD-TYSVLQGIDRVIPVDVY 135 Query: 156 VPGCPPTAEALIYGILLLQK 175 VPGCPP E ++ G++ +Q+ Sbjct: 136 VPGCPPRPEQILDGLMQVQE 155 >gi|326402924|ref|YP_004283005.1| NADH-quinone oxidoreductase subunit B [Acidiphilium multivorum AIU301] gi|325049785|dbj|BAJ80123.1| NADH-quinone oxidoreductase subunit B [Acidiphilium multivorum AIU301] Length = 231 Score = 144 bits (363), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 67/148 (45%), Positives = 101/148 (68%), Gaps = 2/148 (1%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RAS 89 ++ + + ++ +V W R S+ FGL+CC VEM A ++D+ RFG RA+ Sbjct: 41 TDAVRRNVALGRLEDMVAWGRKYSIWPFNFGLSCCYVEMATAFTSKFDIARFGSEVLRAT 100 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PR++D+++++GT+ KMA ++ +YDQM EPR+VISMG+CAN GG Y Y+VV+G D Sbjct: 101 PREADLIVISGTVFVKMAPVIKYLYDQMLEPRWVISMGACANSGGMYDI-YAVVQGADSF 159 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKI 177 +PVD+YVPGCPP +AL+ G++LLQ I Sbjct: 160 LPVDVYVPGCPPRPDALLEGLMLLQNSI 187 >gi|148260123|ref|YP_001234250.1| NADH-quinone oxidoreductase, B subunit [Acidiphilium cryptum JF-5] gi|238065025|sp|A5FXJ9|NUOB2_ACICJ RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName: Full=NADH dehydrogenase I subunit B 2; AltName: Full=NDH-1 subunit B 2 gi|146401804|gb|ABQ30331.1| NADH dehydrogenase subunit B [Acidiphilium cryptum JF-5] Length = 231 Score = 144 bits (363), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 67/148 (45%), Positives = 101/148 (68%), Gaps = 2/148 (1%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RAS 89 ++ + + ++ +V W R S+ FGL+CC VEM A ++D+ RFG RA+ Sbjct: 41 TDAVRRNVALGRLEDMVAWGRKYSIWPFNFGLSCCYVEMATAFTSKFDIARFGSEVLRAT 100 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PR++D+++++GT+ KMA ++ +YDQM EPR+VISMG+CAN GG Y Y+VV+G D Sbjct: 101 PREADLIVISGTVFVKMAPVIKYLYDQMLEPRWVISMGACANSGGMYDI-YAVVQGADSF 159 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKI 177 +PVD+YVPGCPP +AL+ G++LLQ I Sbjct: 160 LPVDVYVPGCPPRPDALLEGLMLLQNSI 187 >gi|325105666|ref|YP_004275320.1| NADH dehydrogenase subunit B [Pedobacter saltans DSM 12145] gi|324974514|gb|ADY53498.1| NADH dehydrogenase subunit B [Pedobacter saltans DSM 12145] Length = 180 Score = 144 bits (363), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 67/158 (42%), Positives = 101/158 (63%), Gaps = 2/158 (1%) Query: 23 DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82 D + + + GF T++DQ++ AR+ SL + F +CC +E M YD RF Sbjct: 3 DIKMANAPAGVEGSGFFATTLDQVIGLARSHSLWPLPFATSCCGIEFMATMGAHYDFSRF 62 Query: 83 GFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYS 141 G P SPRQ+D+++V GT+ KMA L++VY QM EPR+VI++G+CA+ GG + +YS Sbjct: 63 GSERPSFSPRQADLLMVMGTIAKKMAPVLKQVYTQMAEPRWVIAVGACASSGGIFD-TYS 121 Query: 142 VVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179 V++G D I+PVD+YVPGCPP E +I G +Q+ ++ Sbjct: 122 VLQGIDEIIPVDVYVPGCPPRPEGIIDGFNKIQELVKN 159 >gi|91773272|ref|YP_565964.1| F420H2 dehydrogenase subunit B [Methanococcoides burtonii DSM 6242] gi|91712287|gb|ABE52214.1| F420H2 dehydrogenase subunit B [Methanococcoides burtonii DSM 6242] Length = 184 Score = 144 bits (363), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 62/137 (45%), Positives = 89/137 (64%) Query: 41 TSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAG 100 T L+ W R SL ++T + CC VEM+ YD +RFG PR SPR +DVMI++G Sbjct: 38 TKAQDLINWGRKNSLWFLTQPMGCCGVEMIATGCAHYDTDRFGIIPRNSPRAADVMIISG 97 Query: 101 TLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCP 160 +T K AL +++QM P++VI MG C+ GG ++ SYS V+ D++ P+D+++PGCP Sbjct: 98 YVTKKYLPALNTLWEQMAAPKWVICMGDCSISGGPFYESYSTVQNIDKMFPIDVFIPGCP 157 Query: 161 PTAEALIYGILLLQKKI 177 P EAL+ G + LQKKI Sbjct: 158 PRPEALLQGFIELQKKI 174 >gi|284039943|ref|YP_003389873.1| NADH-quinone oxidoreductase subunit beta [Spirosoma linguale DSM 74] gi|283819236|gb|ADB41074.1| NADH-quinone oxidoreductase, B subunit [Spirosoma linguale DSM 74] Length = 181 Score = 144 bits (363), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 67/154 (43%), Positives = 100/154 (64%), Gaps = 2/154 (1%) Query: 23 DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82 D + + GF TS D+++ AR SL + F +CC +E M YDL RF Sbjct: 4 DIKLAEAPASYDGPGFSATSFDKIIGLARANSLWPLPFATSCCGIEFMSTMASHYDLARF 63 Query: 83 GFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYS 141 G P SPRQ+D+++VAGT+ KM +++VY QM EPR+VI++G+CA+ GG + +YS Sbjct: 64 GSERPSFSPRQADMLLVAGTIAKKMGPIVKQVYLQMAEPRWVIAIGACASSGGIFD-TYS 122 Query: 142 VVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175 V++G DRI+PVD+YVPGCPP E ++ G++ +Q+ Sbjct: 123 VLQGIDRIIPVDVYVPGCPPRPEQILEGVMQVQE 156 >gi|254496122|ref|ZP_05109021.1| NADH dehydrogenase I, truncated B subunit [Legionella drancourtii LLAP12] gi|254354663|gb|EET13299.1| NADH dehydrogenase I, truncated B subunit [Legionella drancourtii LLAP12] Length = 80 Score = 144 bits (362), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 65/74 (87%), Positives = 71/74 (95%) Query: 106 MASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEA 165 MA ALR+VYDQMPEPR+V+SMGSCANGGGYYHYSYSVVRGCDRIVPVD+YVPGCPPTAEA Sbjct: 1 MAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEA 60 Query: 166 LIYGILLLQKKIRR 179 L+YGI+ LQ KIRR Sbjct: 61 LLYGIIQLQNKIRR 74 >gi|317050795|ref|YP_004111911.1| NADH-quinone oxidoreductase subunit B [Desulfurispirillum indicum S5] gi|316945879|gb|ADU65355.1| NADH-quinone oxidoreductase, B subunit [Desulfurispirillum indicum S5] Length = 208 Score = 144 bits (362), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 63/145 (43%), Positives = 101/145 (69%), Gaps = 1/145 (0%) Query: 36 KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSD 94 +G ++T+++++ W R+ SL +++ ACC +EM+ +S P++D+ RFG RASPRQ+D Sbjct: 25 QGVIITTLEKVYNWGRSNSLWPLSYATACCGIEMISSSCPQHDIARFGSEVFRASPRQAD 84 Query: 95 VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154 +MI+AGT+T KM + +++Q+ EP+Y I+MG+C GG + YS SVV +P+D+ Sbjct: 85 LMILAGTITKKMMPQVVTLWEQIAEPKYAIAMGNCVITGGIFKYSPSVVANVPDYIPIDV 144 Query: 155 YVPGCPPTAEALIYGILLLQKKIRR 179 ++PGC P EAL GI+ LQ +IRR Sbjct: 145 FIPGCAPRPEALFNGIITLQHQIRR 169 >gi|115378556|ref|ZP_01465711.1| NADH-quinone oxidoreductase chain b [Stigmatella aurantiaca DW4/3-1] gi|310820744|ref|YP_003953102.1| NADH-quinone oxidoreductase chain b [Stigmatella aurantiaca DW4/3-1] gi|115364428|gb|EAU63508.1| NADH-quinone oxidoreductase chain b [Stigmatella aurantiaca DW4/3-1] gi|309393816|gb|ADO71275.1| NADH-quinone oxidoreductase chain B [Stigmatella aurantiaca DW4/3-1] Length = 187 Score = 144 bits (362), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 69/141 (48%), Positives = 98/141 (69%), Gaps = 2/141 (1%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQSDVM 96 FL V + + WAR SL + ACC +E M + R+DL RFG PR SPRQ+D++ Sbjct: 20 FLQRVVSKGLGWARKYSLFTYPYATACCGMEYMSVAGGRHDLARFGAEYPRFSPRQADML 79 Query: 97 IVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV 156 +V GT+ K A L+RVY+QM EP++V++ G CA+ GG+Y +Y+V++G DRI+PVD+Y+ Sbjct: 80 LVTGTINLKQAPILKRVYEQMCEPKWVVAFGVCASSGGFYD-NYAVLQGIDRIIPVDVYI 138 Query: 157 PGCPPTAEALIYGILLLQKKI 177 PGCPP E ++ ILLLQ+KI Sbjct: 139 PGCPPRPEQVLDAILLLQEKI 159 >gi|304311496|ref|YP_003811094.1| NADH dehydrogenase I, chain B [gamma proteobacterium HdN1] gi|301797229|emb|CBL45449.1| NADH dehydrogenase I, chain B [gamma proteobacterium HdN1] Length = 224 Score = 143 bits (361), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 73/142 (51%), Positives = 95/142 (66%), Gaps = 2/142 (1%) Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95 G L + +V W R S+ FGL+CC VE+ A +D+ RFG RASPRQ+D+ Sbjct: 40 GRLEDMLHGVVNWGRKNSIWPYNFGLSCCYVEVTTAFTAPHDIARFGSEVLRASPRQADL 99 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155 M+VAGT KMA ++R+Y+QM EPR+VISMG+CAN GG Y YSVV+G D+ +PVD+Y Sbjct: 100 MVVAGTCFVKMAPVVQRLYEQMLEPRWVISMGACANSGGMYDI-YSVVQGVDKFLPVDVY 158 Query: 156 VPGCPPTAEALIYGILLLQKKI 177 VPGCPP EA + + LLQ I Sbjct: 159 VPGCPPRPEAFLQALQLLQDSI 180 >gi|262197697|ref|YP_003268906.1| NADH-quinone oxidoreductase subunit beta [Haliangium ochraceum DSM 14365] gi|262081044|gb|ACY17013.1| NADH-quinone oxidoreductase, B subunit [Haliangium ochraceum DSM 14365] Length = 167 Score = 143 bits (360), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 62/143 (43%), Positives = 95/143 (66%), Gaps = 2/143 (1%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQSDVM 96 + T V+ W R SL F ACC +E M + P+YD+ RFG PR SPRQSD++ Sbjct: 5 LVTTRVEDAANWGRKFSLFTYPFVTACCGMEFMSVAAPKYDIARFGAEFPRFSPRQSDLL 64 Query: 97 IVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV 156 +V GT+T + L+RVY+QM EP +V++ G CA+ GG+Y +YS + G D+++PVDIY+ Sbjct: 65 MVVGTITERQGPVLKRVYEQMAEPNWVVAFGVCASTGGFYQ-NYSAMPGADQVIPVDIYI 123 Query: 157 PGCPPTAEALIYGILLLQKKIRR 179 PGCPP E ++ +++LQ++++ Sbjct: 124 PGCPPRPEQVLDALIMLQQRVQE 146 >gi|330830046|ref|YP_004392998.1| NADH-quinone oxidoreductase subunit B [Aeromonas veronii B565] gi|328805182|gb|AEB50381.1| NADH-quinone oxidoreductase subunit B [Aeromonas veronii B565] Length = 224 Score = 143 bits (360), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 72/159 (45%), Positives = 101/159 (63%), Gaps = 2/159 (1%) Query: 20 EKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDL 79 + VD ++ ++ G L + V W R SL FG++CC VEM A +D+ Sbjct: 23 QTVDDPLAQEATRGIMMGRLEEVLQDTVNWGRKNSLWPYNFGISCCYVEMCTAFTSPHDV 82 Query: 80 ERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY 138 RFG RASPRQ+D M++AGT KMA ++R+Y+Q+ EP++VISMG+CAN GG Y Sbjct: 83 ARFGAEVIRASPRQADFMVIAGTPFIKMAPVIQRLYEQLLEPKWVISMGACANSGGMYDI 142 Query: 139 SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 YSVV+G D+ +PVD+Y+PGCPP EA + ++LLQ I Sbjct: 143 -YSVVQGVDKFLPVDVYIPGCPPRPEAFLQALMLLQDSI 180 >gi|145298722|ref|YP_001141563.1| NADH dehydrogenase subunit B [Aeromonas salmonicida subsp. salmonicida A449] gi|238065069|sp|A4SLP3|NUOB_AERS4 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|142851494|gb|ABO89815.1| NADH dehydrogenase I, B subunit [Aeromonas salmonicida subsp. salmonicida A449] Length = 224 Score = 143 bits (360), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 72/159 (45%), Positives = 101/159 (63%), Gaps = 2/159 (1%) Query: 20 EKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDL 79 + VD ++ ++ G L + V W R SL FG++CC VEM A +D+ Sbjct: 23 QTVDDPLAQDATRGIMMGRLEEVLQDTVNWGRKNSLWPYNFGISCCYVEMCTAFTSPHDV 82 Query: 80 ERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY 138 RFG RASPRQ+D M++AGT KMA ++R+Y+Q+ EP++VISMG+CAN GG Y Sbjct: 83 ARFGAEVIRASPRQADFMVIAGTPFIKMAPVIQRLYEQLLEPKWVISMGACANSGGMYDI 142 Query: 139 SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 YSVV+G D+ +PVD+Y+PGCPP EA + ++LLQ I Sbjct: 143 -YSVVQGVDKFLPVDVYIPGCPPRPEAFLQALMLLQDSI 180 >gi|24372606|ref|NP_716648.1| NADH dehydrogenase subunit B [Shewanella oneidensis MR-1] gi|81589369|sp|Q8EI30|NUOB_SHEON RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|24346631|gb|AAN54093.1|AE015546_10 NADH dehydrogenase I, B subunit [Shewanella oneidensis MR-1] Length = 224 Score = 143 bits (360), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 72/159 (45%), Positives = 101/159 (63%), Gaps = 2/159 (1%) Query: 20 EKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDL 79 + VD ++ ++ G L + V W R SL FG++CC VEM A +D+ Sbjct: 23 QTVDDPLAQEATRGIMMGRLEEVLKDTVNWGRKNSLWPYNFGISCCYVEMCTAFTSPHDV 82 Query: 80 ERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY 138 RFG RASPRQ+D M++AGT KMA ++R+Y+Q+ EP++VISMG+CAN GG Y Sbjct: 83 ARFGAEVIRASPRQADFMVIAGTPFIKMAPVIQRLYEQLLEPKWVISMGACANSGGMYDI 142 Query: 139 SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 YSVV+G D+ +PVD+Y+PGCPP EA + ++LLQ I Sbjct: 143 -YSVVQGVDKFLPVDVYIPGCPPRPEAFLQALMLLQDSI 180 >gi|320354161|ref|YP_004195500.1| NADH dehydrogenase subunit B [Desulfobulbus propionicus DSM 2032] gi|320122663|gb|ADW18209.1| NADH dehydrogenase subunit B [Desulfobulbus propionicus DSM 2032] Length = 170 Score = 143 bits (360), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 64/141 (45%), Positives = 98/141 (69%), Gaps = 2/141 (1%) Query: 39 LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APRASPRQSDVMI 97 L T +D ++ W R SL FG ACCA+E M A+ + D+ R+G R SPRQ+D+++ Sbjct: 14 LTTKLDAVINWGREYSLWPFVFGTACCAIEFMSAAASQLDISRWGAEVVRFSPRQADLLL 73 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 V GT++ K A L+R+Y+QMPEP++V++MG+CA+ GG Y +Y V+G D I+PVD+Y+ Sbjct: 74 VCGTISYKQAPILKRIYEQMPEPKWVVAMGACASSGGVYD-NYCTVQGIDTIIPVDVYIS 132 Query: 158 GCPPTAEALIYGILLLQKKIR 178 GCPP EA++ ++ +Q KI+ Sbjct: 133 GCPPRPEAVLDALMKIQDKIK 153 >gi|332662314|ref|YP_004445102.1| NAD(P)H-quinone oxidoreductase subunit K [Haliscomenobacter hydrossis DSM 1100] gi|332331128|gb|AEE48229.1| NAD(P)H-quinone oxidoreductase subunit K [Haliscomenobacter hydrossis DSM 1100] Length = 179 Score = 143 bits (360), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 66/147 (44%), Positives = 100/147 (68%), Gaps = 2/147 (1%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA-SPRQ 92 T +GF TS D+ + AR S+ + F +CC +E M YDL RFG + SPRQ Sbjct: 13 TGQGFFATSFDKAIGLARANSIWPLPFATSCCGIEFMATMGAHYDLARFGSERLSFSPRQ 72 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 +D+++V GT+ KM L++VY QM EPR+V+S+G+CA GG + +YSV++G D+++PV Sbjct: 73 ADLLMVMGTIAKKMGPVLKQVYLQMAEPRWVLSVGACACSGGIFD-TYSVLQGIDKVIPV 131 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179 D+YVPGCPPT EA+I G++ +Q+ ++ Sbjct: 132 DVYVPGCPPTPEAIIDGVMKIQELVKN 158 >gi|312890395|ref|ZP_07749932.1| NADH dehydrogenase subunit B [Mucilaginibacter paludis DSM 18603] gi|311297165|gb|EFQ74297.1| NADH dehydrogenase subunit B [Mucilaginibacter paludis DSM 18603] Length = 180 Score = 142 bits (359), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 71/148 (47%), Positives = 101/148 (68%), Gaps = 4/148 (2%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS--P 90 + GF TS+D+ V AR+ SL + F +CC +E M YDL RFG A R S P Sbjct: 13 VEGSGFFATSLDKAVGLARSYSLWPLPFATSCCGIEFMATMGSHYDLSRFG-AERLSFSP 71 Query: 91 RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150 RQ+D+++V GT+ KMA LR+VY QM EPR+V+++G+CA+ GG + +YSV++G D I+ Sbjct: 72 RQADLLMVMGTIAKKMAPVLRQVYLQMAEPRWVMAVGACASSGGIFD-TYSVLQGIDEII 130 Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIR 178 PVD+YVPGCPP EA+I G + +QK ++ Sbjct: 131 PVDVYVPGCPPRPEAIIDGFMNIQKLVQ 158 >gi|297569884|ref|YP_003691228.1| NADH-quinone oxidoreductase, B subunit [Desulfurivibrio alkaliphilus AHT2] gi|296925799|gb|ADH86609.1| NADH-quinone oxidoreductase, B subunit [Desulfurivibrio alkaliphilus AHT2] Length = 177 Score = 142 bits (358), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 66/122 (54%), Positives = 90/122 (73%), Gaps = 3/122 (2%) Query: 43 VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGT 101 +D+L+ R SL MTFGLACCA+EMM R+DL+RFG R +P+QSDVMIVAGT Sbjct: 25 LDKLLNLGRANSLWPMTFGLACCAIEMMATGASRFDLDRFGAGVFRPAPKQSDVMIVAGT 84 Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS--YSVVRGCDRIVPVDIYVPGC 159 ++ KMA A+ +Y+QMP P++VI+MG+CA GG + + Y +V G D+I+PVD+Y+PGC Sbjct: 85 ISKKMAPAIVTLYEQMPHPKWVIAMGNCAISGGPFVFEGQYGIVEGADKILPVDVYIPGC 144 Query: 160 PP 161 PP Sbjct: 145 PP 146 >gi|117619274|ref|YP_856317.1| NADH dehydrogenase subunit B [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|238065068|sp|A0KJ66|NUOB_AERHH RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|117560681|gb|ABK37629.1| NADH-quinone oxidoreductase chain b [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 224 Score = 142 bits (357), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 70/142 (49%), Positives = 94/142 (66%), Gaps = 2/142 (1%) Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95 G L + V W R SL FG++CC VEM A +D+ RFG RASPRQ+D Sbjct: 40 GRLEEVLQDTVNWGRKNSLWPYNFGISCCYVEMCTAFTSPHDVARFGAEVIRASPRQADF 99 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155 M++AGT KMA ++R+Y+Q+ EP++VISMG+CAN GG Y YSVV+G D+ +PVD+Y Sbjct: 100 MVIAGTPFIKMAPVIQRLYEQLLEPKWVISMGACANSGGMYDI-YSVVQGVDKFLPVDVY 158 Query: 156 VPGCPPTAEALIYGILLLQKKI 177 +PGCPP EA + ++LLQ I Sbjct: 159 IPGCPPRPEAFLQALMLLQDSI 180 >gi|116754357|ref|YP_843475.1| NADH-quinone oxidoreductase, B subunit [Methanosaeta thermophila PT] gi|116665808|gb|ABK14835.1| F420H2 dehydrogenase subunit B [Methanosaeta thermophila PT] Length = 190 Score = 142 bits (357), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 60/155 (38%), Positives = 98/155 (63%) Query: 25 DFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF 84 D ++E H+ + + ++ W R SL ++ + CC VEM+ P YD +RFG Sbjct: 29 DVWFTTTEKIHQIIQMGPIKNVLNWGRKNSLWFLMQPMGCCGVEMLVFGCPHYDCDRFGI 88 Query: 85 APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR 144 PRA+PRQ+DVMI++G +T K A++ +++QM EP++ I++G CA GG ++ SY++++ Sbjct: 89 IPRATPRQADVMIISGYITRKYLPAIKNLWEQMLEPKWCIAVGECAISGGPFYDSYNIIQ 148 Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179 P+D+YVPGCPP E I G + LQ+KI++ Sbjct: 149 NTSDFFPIDVYVPGCPPRPEQFIKGFVELQEKIKQ 183 >gi|332830189|gb|EGK02817.1| NADH-quinone oxidoreductase subunit B [Dysgonomonas gadei ATCC BAA-286] Length = 183 Score = 141 bits (356), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 64/147 (43%), Positives = 99/147 (67%), Gaps = 2/147 (1%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA-SPRQ 92 T GF T D ++ AR SL + F +CC +E M YD+ RFG + SPRQ Sbjct: 17 TGHGFFATKFDYVIGLARANSLWPLPFATSCCGIEFMATMASTYDMGRFGAERNSFSPRQ 76 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 +D+++V GT++ KMA LR VY+QM EP++VI++G+CA+ GG + +YSV++G D+++PV Sbjct: 77 ADMLLVMGTISKKMAPILRHVYEQMAEPKWVIAVGACASSGGIFD-TYSVLQGIDKVIPV 135 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179 D+YVPGCPP E ++ G++ LQ+ ++ Sbjct: 136 DVYVPGCPPRPEQILDGVMQLQELVKH 162 >gi|255037834|ref|YP_003088455.1| NADH dehydrogenase subunit B [Dyadobacter fermentans DSM 18053] gi|254950590|gb|ACT95290.1| NADH-quinone oxidoreductase, B subunit [Dyadobacter fermentans DSM 18053] Length = 180 Score = 141 bits (355), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 68/149 (45%), Positives = 101/149 (67%), Gaps = 7/149 (4%) Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQSDV 95 GF TS D+ + AR+ SL + F +CC +E M YD+ RFG P SPRQ+D+ Sbjct: 17 GFFATSFDEAIGLARSYSLWPLPFATSCCGIEFMATMGAHYDISRFGSERPSFSPRQADL 76 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155 ++V GT+ KMA +++VY QM EPR+V+++G+CA+ GG + +YSV++G DRI+PVD+Y Sbjct: 77 LMVMGTIAKKMAPVVKQVYLQMAEPRWVMAVGACASSGGIFD-TYSVLQGIDRIIPVDVY 135 Query: 156 VPGCPPTAEALIYGILLLQ-----KKIRR 179 VPGCPP E +I G++ +Q +K+RR Sbjct: 136 VPGCPPRPEQIIDGLMQIQYLAQNEKLRR 164 >gi|167045512|gb|ABZ10165.1| putative NADH ubiquinone oxidoreductase, 20 Kd subunit [uncultured marine microorganism HF4000_APKG10H11] Length = 182 Score = 141 bits (355), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 65/142 (45%), Positives = 93/142 (65%) Query: 40 VTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVA 99 V V +L+TW R SL + CC+ E + YD+ERFG A+ RQ D++I+ Sbjct: 31 VPLVKKLITWGRKNSLWVVHLTTGCCSPEFAALAGAGYDMERFGPLVMAAMRQCDILIIE 90 Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGC 159 G + +KMA ++R YDQMP+P+YVI++G+CA GG+Y SYS+V G D+I+PVD+YVPGC Sbjct: 91 GQVADKMAEVVKRTYDQMPDPKYVIAVGNCAISGGFYWDSYSMVMGIDKIIPVDVYVPGC 150 Query: 160 PPTAEALIYGILLLQKKIRRVG 181 PP E I I L+Q ++ + G Sbjct: 151 PPRPEDWIDAIRLVQTRMDKEG 172 >gi|332883543|gb|EGK03826.1| NADH-quinone oxidoreductase subunit B [Dysgonomonas mossii DSM 22836] Length = 183 Score = 140 bits (353), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 63/144 (43%), Positives = 98/144 (68%), Gaps = 2/144 (1%) Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA-SPRQSDV 95 GF T D ++ AR SL + F +CC +E M YD+ RFG + SPRQ+D+ Sbjct: 20 GFFATKFDYVIGLARANSLWPLPFATSCCGIEFMATMAATYDMGRFGAERNSFSPRQADM 79 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155 ++V GT++ KMA LR VY+QM EP++VI++G+CA+ GG + +YSV++G D+++PVD+Y Sbjct: 80 LMVMGTISKKMAPILRHVYEQMAEPKWVIAVGACASSGGIFD-TYSVLQGIDKVIPVDVY 138 Query: 156 VPGCPPTAEALIYGILLLQKKIRR 179 VPGCPP E ++ G++ LQ+ ++ Sbjct: 139 VPGCPPRPEQILDGVMQLQELVKH 162 >gi|313206215|ref|YP_004045392.1| NADH dehydrogenase subunit b [Riemerella anatipestifer DSM 15868] gi|312445531|gb|ADQ81886.1| NADH dehydrogenase subunit B [Riemerella anatipestifer DSM 15868] gi|315023100|gb|EFT36113.1| NADH dehydrogenase subunit B [Riemerella anatipestifer RA-YM] gi|325336338|gb|ADZ12612.1| NADH:ubiquinone oxidoreductase 20 kD subunit related Fe-S oxidoreductases [Riemerella anatipestifer RA-GD] Length = 184 Score = 140 bits (353), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 65/143 (45%), Positives = 100/143 (69%), Gaps = 4/143 (2%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS--PR 91 + +GF T + L+ AR+ SL + F +CC +E M +MP YD+ RFG A R S PR Sbjct: 18 SGEGFFATKLSSLIGMARSYSLWPLPFATSCCGIEFMAMAMPTYDMARFG-AERMSFSPR 76 Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151 Q+D ++V GT++ K+A L++VY QM EP++VI++G+CA+ GG + +YSV++G D+I+P Sbjct: 77 QADCLLVCGTISKKLAPVLKQVYSQMAEPKWVIAVGACASSGGIFD-TYSVLQGIDKIIP 135 Query: 152 VDIYVPGCPPTAEALIYGILLLQ 174 VD+YVPGCPP E ++ G + +Q Sbjct: 136 VDVYVPGCPPRPEQILEGFMQVQ 158 >gi|297303011|ref|XP_002806097.1| PREDICTED: NADH-quinone oxidoreductase subunit B-like, partial [Macaca mulatta] Length = 170 Score = 140 bits (353), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 70/126 (55%), Positives = 90/126 (71%), Gaps = 2/126 (1%) Query: 53 GSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALR 111 SL FGL+CC VEM A +D+ RFG RASPRQ+D M++AGT KMA ++ Sbjct: 2 NSLWPYNFGLSCCYVEMTTAFTAPHDIARFGAEVIRASPRQADFMVIAGTCFIKMAPIIQ 61 Query: 112 RVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171 R+Y+QM EP++VISMGSCAN GG Y YSVV+G D+ +PVD+YVPGCPP EA + G++ Sbjct: 62 RLYEQMLEPKWVISMGSCANSGGMYDI-YSVVQGVDKFLPVDVYVPGCPPRPEAFLQGLM 120 Query: 172 LLQKKI 177 LLQ+ I Sbjct: 121 LLQESI 126 >gi|312183553|gb|ADQ42346.1| NADH:ubiquinone oxidoreductase B [Methanosaeta harundinacea] Length = 190 Score = 140 bits (352), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 57/156 (36%), Positives = 98/156 (62%) Query: 24 ADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFG 83 D ++E H+ + + ++ W R SL ++ + CC VEM+ P YD +RFG Sbjct: 28 TDVWFTTTEKIHEIIDMGPIKNVLNWGRKNSLWFLMQPMGCCGVEMLVFGCPHYDCDRFG 87 Query: 84 FAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVV 143 PRA+PRQ DVMI++G +T K A++ +++++PEP++V+++G CA GG ++ SY+++ Sbjct: 88 IFPRATPRQVDVMIISGYITRKYLPAIKNLWEEIPEPKWVMAIGECAISGGPFYDSYNII 147 Query: 144 RGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179 + P+D+++PGCPP E I G LQ+KI++ Sbjct: 148 NDTSKFFPIDVFIPGCPPRPEKFIEGFRGLQEKIKQ 183 >gi|153948912|ref|YP_001400434.1| NADH dehydrogenase subunit B [Yersinia pseudotuberculosis IP 31758] gi|238065223|sp|A7FGQ6|NUOB_YERP3 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|152960407|gb|ABS47868.1| NADH-quinone oxidoreductase, B subunit [Yersinia pseudotuberculosis IP 31758] Length = 227 Score = 139 bits (350), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 68/132 (51%), Positives = 91/132 (68%), Gaps = 2/132 (1%) Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95 G L ++ +V W R SL FGL+CC VEM+ + +D+ RFG RASPRQ+D Sbjct: 41 GKLENAMHDMVNWGRKNSLWPYNFGLSCCYVEMVTSFTAVHDVARFGAEVLRASPRQADF 100 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155 M+VAGT KMA ++R+Y+QM EP++VISMG+CAN GG Y YSVV+G D+ +PVD+Y Sbjct: 101 MVVAGTCFTKMAPVIQRLYEQMLEPKWVISMGACANSGGMYDI-YSVVQGVDKFLPVDVY 159 Query: 156 VPGCPPTAEALI 167 +PGCPP EA + Sbjct: 160 IPGCPPRPEAYM 171 >gi|256425967|ref|YP_003126620.1| NADH dehydrogenase subunit B [Chitinophaga pinensis DSM 2588] gi|256040875|gb|ACU64419.1| NADH-quinone oxidoreductase, B subunit [Chitinophaga pinensis DSM 2588] Length = 187 Score = 139 bits (350), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 64/143 (44%), Positives = 98/143 (68%), Gaps = 2/143 (1%) Query: 36 KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA-SPRQSD 94 +GF T+ DQ++ AR S+ + F +CC +E M YD+ RFG A +PRQ D Sbjct: 23 EGFFATTFDQVIGLARKNSIWPLPFATSCCGIEFMATMASTYDMSRFGSERMAFTPRQCD 82 Query: 95 VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154 +++V GT++ KMA LR+VY QM EPR+V+++G+CA+ GG + +YSV++G D+++PVD+ Sbjct: 83 LLMVMGTISKKMAPVLRQVYLQMAEPRWVVAVGACASSGGVFD-TYSVLQGIDQVIPVDV 141 Query: 155 YVPGCPPTAEALIYGILLLQKKI 177 YVPGCPP EA+I G + +Q + Sbjct: 142 YVPGCPPRPEAIIDGFMRVQDLV 164 >gi|255513406|gb|EET89672.1| NADH-quinone oxidoreductase, B subunit [Candidatus Micrarchaeum acidiphilum ARMAN-2] Length = 206 Score = 139 bits (350), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 62/133 (46%), Positives = 91/133 (68%), Gaps = 1/133 (0%) Query: 46 LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTN 104 +V W+R+ S+ M FGLACCA+E+M R D ER G+ R +PRQ DVMIVAG +T Sbjct: 50 VVKWSRSNSMWPMLFGLACCAIELMDFGAARIDAERKGYLLFRGTPRQCDVMIVAGWVTK 109 Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164 M ++R+Y+QM P+YV++ G CA GG ++ SY++V+G D+++PVD+Y GCPP E Sbjct: 110 SMVPRVKRLYEQMASPKYVVAYGECATAGGPWYESYNIVKGIDQVLPVDVYAIGCPPKPE 169 Query: 165 ALIYGILLLQKKI 177 L ++ LQ+K+ Sbjct: 170 NLFAALMKLQEKV 182 >gi|119188401|ref|XP_001244807.1| hypothetical protein CIMG_04248 [Coccidioides immitis RS] Length = 84 Score = 139 bits (350), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 63/74 (85%), Positives = 69/74 (93%) Query: 106 MASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEA 165 MA ALR+VYDQMP+PR+VISMGSCANGGGYYHYSYSV RGCDRIVPVDIYVPGCPPT+EA Sbjct: 1 MAPALRQVYDQMPDPRWVISMGSCANGGGYYHYSYSVTRGCDRIVPVDIYVPGCPPTSEA 60 Query: 166 LIYGILLLQKKIRR 179 L+YGI LQKK+R Sbjct: 61 LMYGIFQLQKKMRH 74 >gi|327403945|ref|YP_004344783.1| NADH dehydrogenase subunit B [Fluviicola taffensis DSM 16823] gi|327319453|gb|AEA43945.1| NADH dehydrogenase subunit B [Fluviicola taffensis DSM 16823] Length = 182 Score = 139 bits (350), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 63/147 (42%), Positives = 103/147 (70%), Gaps = 2/147 (1%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA-SPR 91 I +GF +T +D+++ AR S+ + F +CC +E M YD+ RFG + SPR Sbjct: 13 INGEGFQLTLLDKVIGAARANSVWPLPFATSCCGIEYMGTMGSNYDVARFGMERMSFSPR 72 Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151 Q+D++IVAGT++ K+A L++VY+QM EP++V+S+G+CA+ GG + +YSV++G DR++P Sbjct: 73 QADLLIVAGTISKKLAPILKQVYEQMAEPKWVLSVGACASSGGIFD-TYSVLQGIDRVIP 131 Query: 152 VDIYVPGCPPTAEALIYGILLLQKKIR 178 VD+YVPGCPP E +I G + + + ++ Sbjct: 132 VDVYVPGCPPRPEQIIEGCMNIHRLVK 158 >gi|330834139|ref|YP_004408867.1| NADH-quinone oxidoreductase, B subunit [Metallosphaera cuprina Ar-4] gi|329566278|gb|AEB94383.1| NADH-quinone oxidoreductase, B subunit [Metallosphaera cuprina Ar-4] Length = 170 Score = 138 bits (348), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 68/142 (47%), Positives = 90/142 (63%) Query: 43 VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL 102 + L W + SL F +CC E + R+D ERFG P AS RQS+++ + GTL Sbjct: 28 IRTLRDWGISFSLWPPHFTTSCCGTEFGAFAAARFDAERFGMLPFASSRQSNILTIEGTL 87 Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162 T KMA A R VYDQMPEP+YVI+MG+C GG + SY+ V D +PVD+Y+PGCP Sbjct: 88 TRKMARAARIVYDQMPEPKYVIAMGACILEGGIFWNSYNTVLPSDVGIPVDLYIPGCPIR 147 Query: 163 AEALIYGILLLQKKIRRVGNVK 184 EA+ G+L+LQKKIR G ++ Sbjct: 148 PEAIARGLLMLQKKIRSQGAIR 169 >gi|146304760|ref|YP_001192076.1| NADH-quinone oxidoreductase subunit B [Metallosphaera sedula DSM 5348] gi|145703010|gb|ABP96152.1| NADH dehydrogenase subunit B [Metallosphaera sedula DSM 5348] Length = 170 Score = 137 bits (346), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 68/142 (47%), Positives = 89/142 (62%) Query: 43 VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL 102 V L W SL F +CC E + R+D ERFG P AS RQS+++ + GTL Sbjct: 28 VKTLRDWGIAFSLWPPHFTTSCCGTEFGAFAAARFDAERFGMLPFASSRQSNILTIEGTL 87 Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162 T KMA A R VYDQMPEP+YVI++G+C GG + SY+ V D +PVD+Y+PGCP Sbjct: 88 TRKMARAARIVYDQMPEPKYVIALGACILEGGIFWNSYNTVLPSDVGIPVDLYLPGCPTR 147 Query: 163 AEALIYGILLLQKKIRRVGNVK 184 EA+ G+L+LQKKIR G ++ Sbjct: 148 PEAIARGLLMLQKKIRTQGAIR 169 >gi|255533962|ref|YP_003094334.1| NADH dehydrogenase subunit B [Pedobacter heparinus DSM 2366] gi|255346946|gb|ACU06272.1| NADH-quinone oxidoreductase, B subunit [Pedobacter heparinus DSM 2366] Length = 180 Score = 137 bits (345), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 65/148 (43%), Positives = 99/148 (66%), Gaps = 2/148 (1%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA-SPR 91 I GF TS+D+++ AR+ SL + F +CC +E M YD RFG + SPR Sbjct: 13 IEGSGFFATSLDKVIGLARSHSLWPLPFATSCCGIEFMATMGSHYDFGRFGSERLSFSPR 72 Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151 Q+D+++V GT+ KM+ L++VY QM EPR+V+++G+CA+ GG + +YSV++G D I+P Sbjct: 73 QADLLMVMGTIAKKMSPVLKQVYLQMAEPRWVMAVGACASSGGIFD-TYSVLQGIDEIIP 131 Query: 152 VDIYVPGCPPTAEALIYGILLLQKKIRR 179 VD+YVPGCPP EA++ G +Q+ +R Sbjct: 132 VDVYVPGCPPRPEAILDGFGKIQELVRN 159 >gi|253729561|ref|YP_003029744.1| NdhK [Bambusa oldhamii] gi|246367071|gb|ACS94682.1| NdhK [Bambusa oldhamii] Length = 253 Score = 137 bits (345), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 61/149 (40%), Positives = 94/149 (63%), Gaps = 1/149 (0%) Query: 32 EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPR 91 + + T+ + W++ SL + +G +CC +E R+D +R+G+ P++SPR Sbjct: 39 QTSSNSVFSTTPNDFSNWSKLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGWVPKSSPR 98 Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIV 150 Q+++++ AG T KMA +L R Y Q PEP+YVI+ G+C GG + SYS VRG D++ Sbjct: 99 QANLILTAGPETMKMAPSLVRFYKQRPEPKYVIARGACTITGGMFSTDSYSTVRGVDKLN 158 Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRR 179 PVD+Y+PGCPP EA+I + L+KKI R Sbjct: 159 PVDVYLPGCPPKPEAVIDALTKLRKKISR 187 >gi|325954435|ref|YP_004238095.1| NAD(P)H-quinone oxidoreductase subunit K [Weeksella virosa DSM 16922] gi|323437053|gb|ADX67517.1| NAD(P)H-quinone oxidoreductase subunit K [Weeksella virosa DSM 16922] Length = 191 Score = 136 bits (343), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 63/144 (43%), Positives = 98/144 (68%), Gaps = 2/144 (1%) Query: 36 KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA-SPRQSD 94 +GF+ + ++V AR S+ + F +CC +E M +YDL RFG A +PRQ D Sbjct: 27 EGFMAMQLSKVVGLARKNSIWPLPFATSCCGIEFMATMGSKYDLARFGSERLAFTPRQCD 86 Query: 95 VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154 +++V GT++ KMA L++VY QM EPR+VI++G+CA+ GG + +YSV++G D ++PVD+ Sbjct: 87 LLMVMGTISKKMAPVLKQVYIQMAEPRWVIAVGACASSGGIFD-TYSVLQGIDEVIPVDV 145 Query: 155 YVPGCPPTAEALIYGILLLQKKIR 178 YVPGCPP E +I G++ +Q+ I Sbjct: 146 YVPGCPPRPEGIIEGVMRIQELIE 169 >gi|255318317|ref|ZP_05359552.1| NADH-quinone oxidoreductase, B subunit [Acinetobacter radioresistens SK82] gi|262379061|ref|ZP_06072217.1| trifunctional NADH dehydrogenase I subunit B/C/D [Acinetobacter radioresistens SH164] gi|255304629|gb|EET83811.1| NADH-quinone oxidoreductase, B subunit [Acinetobacter radioresistens SK82] gi|262298518|gb|EEY86431.1| trifunctional NADH dehydrogenase I subunit B/C/D [Acinetobacter radioresistens SH164] Length = 225 Score = 136 bits (343), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 70/140 (50%), Positives = 90/140 (64%), Gaps = 5/140 (3%) Query: 29 ISSEITHKGFLVTSVDQL---VTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA 85 + SE+ F+ D L V W R S+ FG +CC VE +D+ RFG Sbjct: 27 LESEVNKNVFMTRLEDVLHTAVNWGRKNSIWPFNFGTSCCYVEYATTLTGVHDMSRFGAE 86 Query: 86 P-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR 144 RASPRQ+D+MIVAGT KMA ++R+Y+QM EP++VISMG+CAN GG Y YSVV+ Sbjct: 87 VIRASPRQADLMIVAGTCFTKMAPVIQRLYEQMLEPKWVISMGACANSGGMYDI-YSVVQ 145 Query: 145 GCDRIVPVDIYVPGCPPTAE 164 G D+I+PVD+YVPGCPP E Sbjct: 146 GVDKIIPVDVYVPGCPPRPE 165 >gi|14325377|dbj|BAB60281.1| NADH dehydrogenase I chain B [Thermoplasma volcanium GSS1] Length = 116 Score = 135 bits (341), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 67/111 (60%), Positives = 81/111 (72%), Gaps = 1/111 (0%) Query: 69 MMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMG 127 MM D+ RFG R SPRQSD+MIV+GT+T KMA +RR+YD+MP P+YVI+ G Sbjct: 1 MMAIQASDMDISRFGSEIFRNSPRQSDLMIVSGTVTKKMAPRVRRIYDEMPYPKYVIAQG 60 Query: 128 SCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 C GG Y+ YSVV G D++VPVD+YVPGCPPT EAL GI+LLQKKIR Sbjct: 61 VCVIQGGPYNQGYSVVLGVDKVVPVDVYVPGCPPTPEALTNGIILLQKKIR 111 >gi|255535796|ref|YP_003096167.1| NADH dehydrogenase subunit B [Flavobacteriaceae bacterium 3519-10] gi|255341992|gb|ACU08105.1| NADH-ubiquinone oxidoreductase chain B [Flavobacteriaceae bacterium 3519-10] Length = 185 Score = 135 bits (340), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 64/150 (42%), Positives = 99/150 (66%), Gaps = 7/150 (4%) Query: 36 KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA-SPRQSD 94 +GF T + ++ AR SL + F +CC +E M P YD RFG + SPRQ+D Sbjct: 21 EGFFATKLSSVIGMARKYSLWPLPFATSCCGIEFMAVLNPTYDASRFGMERNSFSPRQAD 80 Query: 95 VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154 +++V GT++ K+ L++VY QM EPR+V+++G+CA+ GG + +YSV++G D+I+PVD+ Sbjct: 81 MLMVCGTISKKLGPVLKQVYTQMAEPRWVVAVGACASSGGIFD-TYSVLQGIDKIIPVDV 139 Query: 155 YVPGCPPTAEALIYGILLLQ-----KKIRR 179 YVPGCPP E +I G++ +Q + IRR Sbjct: 140 YVPGCPPRPEQIIEGVMQVQALCEGESIRR 169 >gi|300775173|ref|ZP_07085035.1| NADH-quinone oxidoreductase subunit B [Chryseobacterium gleum ATCC 35910] gi|300505913|gb|EFK37049.1| NADH-quinone oxidoreductase subunit B [Chryseobacterium gleum ATCC 35910] Length = 186 Score = 135 bits (339), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 63/150 (42%), Positives = 98/150 (65%), Gaps = 7/150 (4%) Query: 36 KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA-SPRQSD 94 +GF T + ++ AR SL + F +CC +E M P YD RFG + SPRQ+D Sbjct: 21 EGFFATKLSSVIGMARKFSLWPLPFATSCCGIEFMATLNPTYDASRFGMERNSFSPRQAD 80 Query: 95 VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154 +++V GT++ K+ L+ VY QM EP++V+++G+CA+ GG + +YSV++G D+I+PVD+ Sbjct: 81 MLMVCGTISKKLGPVLKEVYTQMAEPKWVVAVGACASSGGIFD-TYSVLQGIDKIIPVDV 139 Query: 155 YVPGCPPTAEALIYGILLLQ-----KKIRR 179 YVPGCPP E +I G++ +Q + IRR Sbjct: 140 YVPGCPPRPEQIIEGVMQVQALAESESIRR 169 >gi|302348182|ref|YP_003815820.1| NADH-quinone oxidoreductase subunit B subunit [Acidilobus saccharovorans 345-15] gi|302328594|gb|ADL18789.1| NADH-quinone oxidoreductase subunit B subunit [Acidilobus saccharovorans 345-15] Length = 210 Score = 134 bits (338), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 63/154 (40%), Positives = 102/154 (66%), Gaps = 1/154 (0%) Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87 +++++ + + ++ ++V WA SL + +CC E+ A PR+D ER+G P Sbjct: 24 EVAAQLAKESLIKGTIAKVVDWATAFSLWPVHLMTSCCGCEIGAAWGPRFDNERYGSLPW 83 Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCD 147 SPRQ++++I+ GT+T KMA +R ++QMP P++VI+MG+C+ GG ++ SY++VR Sbjct: 84 VSPRQTNLIIIEGTVTKKMACTVRITWEQMPFPKFVIAMGACSLDGGIFYNSYNIVRPW- 142 Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181 ++VPVDIY+PGCPP EA+ I+ LQK IR G Sbjct: 143 QVVPVDIYIPGCPPRPEAVARSIVELQKIIRSRG 176 >gi|224373442|ref|YP_002607814.1| NADH-ubiquinone oxidoreductase 20 kda subunit [Nautilia profundicola AmH] gi|223588944|gb|ACM92680.1| NADH-ubiquinone oxidoreductase 20 kda subunit [Nautilia profundicola AmH] Length = 157 Score = 134 bits (337), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 61/138 (44%), Positives = 92/138 (66%) Query: 42 SVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGT 101 V +AR+ S + F CC++EM+ A PRYD ER+G+ +PRQ+D+M + G Sbjct: 3 KVLDFFNYARSKSPWIVHFCSGCCSLEMLAAMGPRYDWERYGYIMTPTPRQADIMFITGL 62 Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP 161 ++ K+ AL R Y+QMPEPRYV+++G+CA GG Y+ S SV++ I+P D++V GCPP Sbjct: 63 VSKKILPALLRTYEQMPEPRYVVAIGACAYDGGPYNDSVSVIKNMTEILPADVFVAGCPP 122 Query: 162 TAEALIYGILLLQKKIRR 179 EA+I G+ L++KI+R Sbjct: 123 RPEAIIAGLEELKEKIKR 140 >gi|18313693|ref|NP_560360.1| NADH-ubiquinone oxidoreductase subunit [Pyrobaculum aerophilum str. IM2] gi|18161245|gb|AAL64542.1| NADH-ubiquinone oxidoreductase subunit [Pyrobaculum aerophilum str. IM2] Length = 190 Score = 134 bits (337), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 62/137 (45%), Positives = 92/137 (67%), Gaps = 1/137 (0%) Query: 42 SVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGT 101 ++++ W SL + +CC VE+ S P +D ER+G P + RQ++V+IV GT Sbjct: 14 KLERVFKWGVRWSLWPVHLVTSCCGVEVAHTSAPGFDAERWGVLPFNTMRQTNVIIVEGT 73 Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP 161 +T KMA L++VY+QMPEP++V++MG+CA GG + SY VV+ D IVPVD+Y+ GCPP Sbjct: 74 ITRKMAKVLKQVYEQMPEPKFVLAMGACAVRGGLFWNSYHVVQ-VDTIVPVDVYIAGCPP 132 Query: 162 TAEALIYGILLLQKKIR 178 T EA+I ++L KI+ Sbjct: 133 TPEAVIRAFIMLHNKIK 149 >gi|170289764|ref|YP_001736580.1| F420H2 dehydrogenase subunit [Candidatus Korarchaeum cryptofilum OPF8] gi|170173844|gb|ACB06897.1| F420H2 dehydrogenase subunit [Candidatus Korarchaeum cryptofilum OPF8] Length = 174 Score = 134 bits (336), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 64/136 (47%), Positives = 89/136 (65%), Gaps = 1/136 (0%) Query: 49 WARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108 W SL + F ACC E ++ P+YD ER GF P RQ +V+ + GTL+ KMA Sbjct: 37 WGIAFSLWPVHFTTACCGAEFAASAAPKYDAERLGFLPFIGIRQCNVLFIEGTLSKKMAE 96 Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168 A VY+QMPEP++VI MG+CA GG + SY++VR D I+PV++++PGCPP EA+ Sbjct: 97 AAIWVYEQMPEPKFVIGMGACAIDGGIFWNSYNIVRPMD-ILPVNVFIPGCPPRPEAVAQ 155 Query: 169 GILLLQKKIRRVGNVK 184 I++LQ+KIR+ VK Sbjct: 156 AIIMLQRKIRKGELVK 171 >gi|15897574|ref|NP_342179.1| NADH dehydrogenase subunit B (NuoB) [Sulfolobus solfataricus P2] gi|284174895|ref|ZP_06388864.1| NADH dehydrogenase subunit B (NuoB) [Sulfolobus solfataricus 98/2] gi|6015810|emb|CAB57637.1| hypothetical protein [Sulfolobus solfataricus P2] gi|13813833|gb|AAK40969.1| NADH dehydrogenase subunit B (NuoB) [Sulfolobus solfataricus P2] gi|261602337|gb|ACX91940.1| NADH-quinone oxidoreductase, B subunit [Sulfolobus solfataricus 98/2] Length = 170 Score = 133 bits (335), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 64/142 (45%), Positives = 90/142 (63%) Query: 43 VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL 102 + ++ W + SL F +CC E + R+D ER+G P +S RQS+++I+ GTL Sbjct: 28 IKSIIDWGISFSLWPPHFTTSCCGTEFGAFAAARFDAERYGMLPFSSARQSNILILEGTL 87 Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162 + KM A R VYDQMPEP+YVI++G+C GG + SY+ V D +PVD+YVPGCP Sbjct: 88 SRKMGRAARIVYDQMPEPKYVIALGACILEGGIFWNSYNTVLPSDIGIPVDLYVPGCPIR 147 Query: 163 AEALIYGILLLQKKIRRVGNVK 184 EA+ +L+LQKKIR G +K Sbjct: 148 PEAVARAVLMLQKKIRTQGALK 169 >gi|237809381|ref|YP_002893821.1| NADH dehydrogenase subunit B [Tolumonas auensis DSM 9187] gi|259514690|sp|C4LB32|NUOB_TOLAT RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|237501642|gb|ACQ94235.1| NADH-quinone oxidoreductase, B subunit [Tolumonas auensis DSM 9187] Length = 223 Score = 133 bits (334), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 65/129 (50%), Positives = 87/129 (67%), Gaps = 2/129 (1%) Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95 G L ++ V W R SL FG++CC VEM A +D+ RFG RASPRQ+D Sbjct: 39 GKLENVLNSTVNWGRKNSLWPYNFGISCCYVEMTTAFTAVHDVARFGAEVIRASPRQADF 98 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155 M++AGT KMA ++R+Y+Q+ EP++VISMG+CAN GG Y YSVV+G D+ +PVD+Y Sbjct: 99 MVIAGTPFIKMAPVIQRLYEQLLEPKWVISMGACANSGGMYDI-YSVVQGVDKFLPVDVY 157 Query: 156 VPGCPPTAE 164 +PGCPP E Sbjct: 158 IPGCPPRPE 166 >gi|124027080|ref|YP_001012400.1| NAD(P)H-quinone oxidoreductase chain K [Hyperthermus butylicus DSM 5456] gi|123977774|gb|ABM80055.1| NAD(P)H-quinone oxidoreductase chain K [Hyperthermus butylicus DSM 5456] Length = 209 Score = 133 bits (334), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 62/137 (45%), Positives = 91/137 (66%), Gaps = 1/137 (0%) Query: 43 VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL 102 + L+ W + SL + +CC E P+YD ER G P PR ++V++V GTL Sbjct: 33 IKSLLDWGISFSLWPVHLTTSCCGAEFAAVYDPKYDSERLGSLPFTHPRNTNVLLVEGTL 92 Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162 T KMA A R V++QMP P++VI+MG+CA GG ++ SY++VR ++I+PVD YVPGCPPT Sbjct: 93 TRKMARAARLVWEQMPWPKFVIAMGACAITGGIFYNSYNIVR-VNQILPVDYYVPGCPPT 151 Query: 163 AEALIYGILLLQKKIRR 179 EA+ ++ LQ+K+R+ Sbjct: 152 PEAVANALIKLQEKVRK 168 >gi|159041010|ref|YP_001540262.1| NADH-quinone oxidoreductase, B subunit [Caldivirga maquilingensis IC-167] gi|157919845|gb|ABW01272.1| NADH-quinone oxidoreductase, B subunit [Caldivirga maquilingensis IC-167] Length = 374 Score = 133 bits (334), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 65/135 (48%), Positives = 86/135 (63%), Gaps = 1/135 (0%) Query: 44 DQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLT 103 D L +W S+ ACC VE AS P YD ER+GF P PRQ++ +++ GT+T Sbjct: 25 DSLASWGTKFSIWPAHLVTACCGVEFAHASAPGYDAERWGFLPIFGPRQTNSIVIEGTVT 84 Query: 104 NKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTA 163 KMA ++ Y+QMP P++VI+MGSCA GG + SY VVR + IVPVD +V GCPPT Sbjct: 85 RKMARIVKTAYEQMPYPKFVIAMGSCAMEGGVFWNSYHVVR-VNEIVPVDAWVMGCPPTP 143 Query: 164 EALIYGILLLQKKIR 178 EA+I I ++Q KI Sbjct: 144 EAVIRAIRMVQSKIE 158 >gi|255961309|ref|YP_003097491.1| NADH dehydrogenase subunit K [Selaginella moellendorffii] gi|254941481|gb|ACT88996.1| NADH dehydrogenase subunit K [Selaginella moellendorffii] Length = 213 Score = 132 bits (333), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 70/180 (38%), Positives = 100/180 (55%), Gaps = 12/180 (6%) Query: 1 MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTF 60 +G TVN +++ S ++ D + T+++ WAR S + + Sbjct: 14 IGNNTVNDLMVNPMGRPSGDRATPD-----------SIVPTTLNDSTNWARLSSSRPLPY 62 Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 G +CC++E R D +R G PR+SPRQ+D+ I AGT T KMA +L R Y+QMPEP Sbjct: 63 GTSCCSIEFAPLIGSRSDSDRHGSVPRSSPRQADLTITAGTATMKMAPSLVRSYEQMPEP 122 Query: 121 RYVISMGS-CANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179 +Y I+MG+ GG +S VRG D+ +P DIY PGCPP EALI I+ +KK+ R Sbjct: 123 KYAIAMGARTVTGGMLSTDPHSTVRGVDKSIPADIYPPGCPPKPEALIDAIIKPRKKVSR 182 >gi|302824537|ref|XP_002993911.1| hypothetical protein SELMODRAFT_4550 [Selaginella moellendorffii] gi|302824543|ref|XP_002993914.1| hypothetical protein SELMODRAFT_4549 [Selaginella moellendorffii] gi|300138278|gb|EFJ05052.1| hypothetical protein SELMODRAFT_4550 [Selaginella moellendorffii] gi|300138281|gb|EFJ05055.1| hypothetical protein SELMODRAFT_4549 [Selaginella moellendorffii] Length = 209 Score = 132 bits (333), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 70/180 (38%), Positives = 100/180 (55%), Gaps = 12/180 (6%) Query: 1 MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTF 60 +G TVN +++ S ++ D + T+++ WAR S + + Sbjct: 14 IGNNTVNDLMVNPMGRPSGDRATPD-----------SIVPTTLNDSTNWARLSSSRPLPY 62 Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 G +CC++E R D +R G PR+SPRQ+D+ I AGT T KMA +L R Y+QMPEP Sbjct: 63 GTSCCSIEFAPLIGSRSDSDRHGSVPRSSPRQADLTITAGTATMKMAPSLVRSYEQMPEP 122 Query: 121 RYVISMGS-CANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179 +Y I+MG+ GG +S VRG D+ +P DIY PGCPP EALI I+ +KK+ R Sbjct: 123 KYAIAMGARTVTGGMLSTDPHSTVRGVDKSIPADIYPPGCPPKPEALIDAIIKPRKKVSR 182 >gi|327311105|ref|YP_004338002.1| NADH-quinone oxidoreductase subunit B [Thermoproteus uzoniensis 768-20] gi|326947584|gb|AEA12690.1| NADH-quinone oxidoreductase subunit B [Thermoproteus uzoniensis 768-20] Length = 202 Score = 132 bits (333), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 62/136 (45%), Positives = 90/136 (66%), Gaps = 1/136 (0%) Query: 42 SVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGT 101 +D+++ W S+ + +CC VE+ S P +D ER+G P + RQ++V++V GT Sbjct: 16 KLDRIIRWGIKWSMWPVHLVTSCCGVEVAHTSAPVFDAERWGVLPFNTMRQTNVILVEGT 75 Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP 161 +T KMA L+ VY+QMPEP++VI+MG+CA GG + SY VV+ D IVPVD Y+PGCPP Sbjct: 76 ITRKMAKVLKWVYEQMPEPKFVIAMGACAVRGGLFWNSYHVVQ-VDTIVPVDAYIPGCPP 134 Query: 162 TAEALIYGILLLQKKI 177 T EA+I ++ KI Sbjct: 135 TPEAVIRAFFMVGNKI 150 >gi|330508771|ref|YP_004385199.1| F420H2 dehydrogenase subunit B [Methanosaeta concilii GP-6] gi|328929579|gb|AEB69381.1| F420H2 dehydrogenase, subunit B [Methanosaeta concilii GP-6] Length = 190 Score = 132 bits (333), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 54/155 (34%), Positives = 95/155 (61%) Query: 30 SSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS 89 ++E H+ + + + W R S+ ++ + CC VEM YD +RFG PR + Sbjct: 34 TTEKIHEIIQMGPIKNIFNWGRKNSVYFLMQPMGCCGVEMFVFGAAPYDSDRFGCIPRNT 93 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQ+DVMI++G LT K + +++ MPEP++ I++G CA GG ++ SY++++ Sbjct: 94 PRQTDVMIISGYLTRKYLPVFKNLWENMPEPKWCIAIGECAISGGPFYDSYNIIQNTGDY 153 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 P+D+Y+PGCPP E + G++ LQ+KI++ +++ Sbjct: 154 FPIDVYIPGCPPRPEQFLEGLMNLQEKIKQRKDLR 188 >gi|296399240|gb|ADH10415.1| NADH-plastoquinone oxidoreductase subunit K [Selaginella moellendorffii] Length = 212 Score = 132 bits (333), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 70/180 (38%), Positives = 100/180 (55%), Gaps = 12/180 (6%) Query: 1 MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTF 60 +G TVN +++ S ++ D + T+++ WAR S + + Sbjct: 14 IGNNTVNDLMVNPMGRPSGDRATPD-----------SIVPTTLNDSTNWARLSSSRPLPY 62 Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 G +CC++E R D +R G PR+SPRQ+D+ I AGT T KMA +L R Y+QMPEP Sbjct: 63 GTSCCSIEFAPLIGSRSDSDRHGSVPRSSPRQADLTITAGTATMKMAPSLVRSYEQMPEP 122 Query: 121 RYVISMGS-CANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179 +Y I+MG+ GG +S VRG D+ +P DIY PGCPP EALI I+ +KK+ R Sbjct: 123 KYAIAMGARTVTGGMLSTDPHSTVRGVDKSIPADIYPPGCPPKPEALIDAIIKPRKKVSR 182 >gi|218670928|ref|ZP_03520599.1| NuoB2 NADH I chain B [Rhizobium etli GR56] Length = 117 Score = 132 bits (332), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 61/106 (57%), Positives = 82/106 (77%), Gaps = 1/106 (0%) Query: 39 LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIV 98 L T+ D +++W+R +L TFG+ACCA+EM+ A RYDL+RFG R SPRQSDVMI+ Sbjct: 13 LFTTADSIISWSRRSALWPETFGIACCAIEMISAGCARYDLDRFGVVFRPSPRQSDVMII 72 Query: 99 AGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR 144 AGT+T K A +RR+YDQMPEPR+VI+MG+CA GG Y+ +Y+VV+ Sbjct: 73 AGTVTRKFAPVVRRLYDQMPEPRWVIAMGTCAISGGVYN-TYAVVQ 117 >gi|171186232|ref|YP_001795151.1| NADH-quinone oxidoreductase, B subunit [Thermoproteus neutrophilus V24Sta] gi|170935444|gb|ACB40705.1| NADH-quinone oxidoreductase, B subunit [Thermoproteus neutrophilus V24Sta] Length = 182 Score = 132 bits (332), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 62/137 (45%), Positives = 91/137 (66%), Gaps = 1/137 (0%) Query: 42 SVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGT 101 +++L W SL + +CC VE+ S P +D ER+G P + RQS+V++V GT Sbjct: 14 KLEKLFKWGVRWSLWPVHLVTSCCGVEVAHTSGPGFDAERWGVLPFHTMRQSNVILVEGT 73 Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP 161 +T KMA L+ VY+QMPEP+YV++MG+CA GG + SY VV+ D ++PVD+Y+ GCPP Sbjct: 74 ITRKMARVLKMVYEQMPEPKYVLAMGACAVRGGLFWNSYHVVQ-VDTVLPVDVYIAGCPP 132 Query: 162 TAEALIYGILLLQKKIR 178 T EA+I ++L KI+ Sbjct: 133 TPEAVIRAFMMLHNKIK 149 >gi|149195032|ref|ZP_01872124.1| proton-translocating NADH-quinone oxidoreductase, B subunit [Caminibacter mediatlanticus TB-2] gi|149134745|gb|EDM23229.1| proton-translocating NADH-quinone oxidoreductase, B subunit [Caminibacter mediatlanticus TB-2] Length = 157 Score = 132 bits (331), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 59/138 (42%), Positives = 92/138 (66%) Query: 42 SVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGT 101 V +AR+ S + F CC++EM+ A PRYD ER+G+ +PRQ+D++ + G Sbjct: 3 KVLDFFNYARSKSPWIVHFCSGCCSLEMLAAMGPRYDWERYGYMMTPTPRQADIIFITGL 62 Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP 161 ++ K+ AL R Y+QMPEPRYV+++G+CA GG Y+ S SV++ I+P D++V GCPP Sbjct: 63 VSKKILPALLRTYEQMPEPRYVVAIGACAYDGGPYNDSPSVIKNMTEILPADVFVAGCPP 122 Query: 162 TAEALIYGILLLQKKIRR 179 EA++ G+ L++KI+R Sbjct: 123 KPEAIVAGLEELKEKIKR 140 >gi|70607377|ref|YP_256247.1| NADH:ubiquinone oxidoreductase, B subunit [Sulfolobus acidocaldarius DSM 639] gi|68568025|gb|AAY80954.1| NADH:ubiquinone oxidoreductase, B subunit [Sulfolobus acidocaldarius DSM 639] Length = 171 Score = 132 bits (331), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 63/157 (40%), Positives = 92/157 (58%) Query: 22 VDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLER 81 + + +S ++ + + L W + SL +CC E + R+D ER Sbjct: 7 LTGNLEEVSKKVVNWLLNRKPIKSLKDWGTSFSLWPPHLTTSCCGTEFGAFAAARFDAER 66 Query: 82 FGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYS 141 +G P +S RQ++++++ GTLT KM A + VYDQMPEP++VI+MG+CA GG + SY+ Sbjct: 67 YGVLPFSSARQTNLLVIEGTLTRKMGRAAKIVYDQMPEPKFVIAMGACALEGGIFWNSYN 126 Query: 142 VVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 V D +PVDIY PGCP EAL +LLLQK+IR Sbjct: 127 TVLPSDLGIPVDIYAPGCPTRPEALARAVLLLQKRIR 163 >gi|126464931|ref|YP_001040040.1| NADH-quinone oxidoreductase, B subunit [Staphylothermus marinus F1] gi|126013754|gb|ABN69132.1| NADH-quinone oxidoreductase, B subunit [Staphylothermus marinus F1] Length = 165 Score = 131 bits (329), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 55/114 (48%), Positives = 83/114 (72%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E++ A P YD ERFG S R +D+++V G +T K A L+R+Y+QMP+P++V+ Sbjct: 44 CDIEVLAAITPLYDPERFGIKLAPSIRHADILVVTGAVTKKAAERLKRLYEQMPDPKFVV 103 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 ++G+CA GG +H SYSV+ G D+++PVDIYVPGCPP EA++ GI+ L K++ Sbjct: 104 AVGACAISGGVFHNSYSVLAGTDKVIPVDIYVPGCPPRPEAILDGIVKLLKRLE 157 >gi|15921820|ref|NP_377489.1| NADH-ubiquinone oxidoreductase subunit K [Sulfolobus tokodaii str. 7] gi|15622607|dbj|BAB66598.1| 173aa long hypothetical NADH-ubiquinone oxidoreductase subunit K [Sulfolobus tokodaii str. 7] Length = 173 Score = 131 bits (329), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 63/142 (44%), Positives = 88/142 (61%) Query: 43 VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL 102 + L+ W + SL +CC E + R+D ERFG P +S RQ++++++ GTL Sbjct: 28 IKNLIDWGISFSLWPPHLTTSCCGTEFGAFAAARFDAERFGVLPFSSARQTNLLVIEGTL 87 Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162 T KMA A + VYDQMPEP++VI+MG+C+ GG + SY+ V + +PVDIY PGCP Sbjct: 88 TRKMARAAKIVYDQMPEPKWVIAMGACSLEGGIFWNSYNTVLPSEIGIPVDIYAPGCPTR 147 Query: 163 AEALIYGILLLQKKIRRVGNVK 184 EAL I+ LQK+IR VK Sbjct: 148 PEALARAIITLQKRIRSNQTVK 169 >gi|229579262|ref|YP_002837660.1| NADH-quinone oxidoreductase, B subunit [Sulfolobus islandicus Y.G.57.14] gi|229581977|ref|YP_002840376.1| NADH-quinone oxidoreductase, B subunit [Sulfolobus islandicus Y.N.15.51] gi|228009976|gb|ACP45738.1| NADH-quinone oxidoreductase, B subunit [Sulfolobus islandicus Y.G.57.14] gi|228012693|gb|ACP48454.1| NADH-quinone oxidoreductase, B subunit [Sulfolobus islandicus Y.N.15.51] Length = 170 Score = 131 bits (329), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 62/139 (44%), Positives = 88/139 (63%) Query: 43 VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL 102 + ++ W + SL F +CC E + R+D ER+G P +S RQS+++I+ GTL Sbjct: 28 IKSIIDWGISFSLWPPHFTTSCCGTEFGAFAAARFDAERYGMLPFSSARQSNILILEGTL 87 Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162 + KM A R VYDQMPEP++VI++G+C GG + SY+ V D +PVD+YVPGCP Sbjct: 88 SRKMGRAARIVYDQMPEPKFVIALGACILEGGIFWNSYNTVLPSDLGIPVDLYVPGCPIR 147 Query: 163 AEALIYGILLLQKKIRRVG 181 EA+ +L+LQKKIR G Sbjct: 148 PEAVARAVLMLQKKIRTQG 166 >gi|227827741|ref|YP_002829521.1| NADH-quinone oxidoreductase subunit beta [Sulfolobus islandicus M.14.25] gi|227830450|ref|YP_002832230.1| NADH-quinone oxidoreductase, B subunit [Sulfolobus islandicus L.S.2.15] gi|229585012|ref|YP_002843514.1| NADH-quinone oxidoreductase, B subunit [Sulfolobus islandicus M.16.27] gi|238619913|ref|YP_002914739.1| NADH-quinone oxidoreductase, B subunit [Sulfolobus islandicus M.16.4] gi|284997944|ref|YP_003419711.1| NADH-quinone oxidoreductase, B subunit [Sulfolobus islandicus L.D.8.5] gi|227456898|gb|ACP35585.1| NADH-quinone oxidoreductase, B subunit [Sulfolobus islandicus L.S.2.15] gi|227459537|gb|ACP38223.1| NADH-quinone oxidoreductase, B subunit [Sulfolobus islandicus M.14.25] gi|228020062|gb|ACP55469.1| NADH-quinone oxidoreductase, B subunit [Sulfolobus islandicus M.16.27] gi|238380983|gb|ACR42071.1| NADH-quinone oxidoreductase, B subunit [Sulfolobus islandicus M.16.4] gi|284445839|gb|ADB87341.1| NADH-quinone oxidoreductase, B subunit [Sulfolobus islandicus L.D.8.5] gi|323474809|gb|ADX85415.1| NADH-quinone oxidoreductase, B subunit [Sulfolobus islandicus REY15A] gi|323477516|gb|ADX82754.1| NADH-quinone oxidoreductase, B subunit [Sulfolobus islandicus HVE10/4] Length = 170 Score = 131 bits (329), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 62/139 (44%), Positives = 88/139 (63%) Query: 43 VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL 102 + ++ W + SL F +CC E + R+D ER+G P +S RQS+++I+ GTL Sbjct: 28 IKSIIDWGISFSLWPPHFTTSCCGTEFGAFAAARFDAERYGMLPFSSARQSNILILEGTL 87 Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162 + KM A R VYDQMPEP++VI++G+C GG + SY+ V D +PVD+YVPGCP Sbjct: 88 SRKMGRAARIVYDQMPEPKFVIALGACILEGGIFWNSYNTVLPSDLGIPVDLYVPGCPIR 147 Query: 163 AEALIYGILLLQKKIRRVG 181 EA+ +L+LQKKIR G Sbjct: 148 PEAVARAVLMLQKKIRTQG 166 >gi|118431453|ref|NP_147936.2| NuoB-like protein [Aeropyrum pernix K1] gi|116062777|dbj|BAA80425.2| NuoB homolog [Aeropyrum pernix K1] Length = 199 Score = 131 bits (329), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 58/136 (42%), Positives = 92/136 (67%), Gaps = 1/136 (0%) Query: 43 VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL 102 +D++V WA + SL + +CC+ E PR D E+FG P PRQ++++I+ GT+ Sbjct: 31 LDKMVDWATSFSLWPVHLTTSCCSTEFAATFAPRIDGEQFGALPWVGPRQTNLIIIEGTV 90 Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162 T KMA A+R ++QMP P++ I+MG+CA GG ++ SY++V+ +++P+DIY+PGCPP Sbjct: 91 TKKMACAVRLTWEQMPHPKFAIAMGACALDGGLFYNSYNIVKPW-QVLPIDIYIPGCPPR 149 Query: 163 AEALIYGILLLQKKIR 178 E + I+ LQ+KIR Sbjct: 150 PEGVARAIVELQRKIR 165 >gi|51245172|ref|YP_065056.1| NADH dehydrogenase, subunit 10 [Desulfotalea psychrophila LSv54] gi|50876209|emb|CAG36049.1| probable NADH dehydrogenase, subunit 10 [Desulfotalea psychrophila LSv54] Length = 128 Score = 130 bits (328), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 63/112 (56%), Positives = 82/112 (73%), Gaps = 3/112 (2%) Query: 69 MMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMG 127 MM A RYDL RFG R S RQSDVMIVAGT++ KMA ++ +YDQMPEP++VI+MG Sbjct: 1 MMSAGCARYDLSRFGAEVFRPSARQSDVMIVAGTISKKMAEGIKTLYDQMPEPKWVIAMG 60 Query: 128 SCANGGGYYHYS--YSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 +CA GG + + Y ++ G D+I+PVDIY+PGCPP EALI GI+ L+ +I Sbjct: 61 NCAISGGPFVFEGQYGIIEGADKILPVDIYIPGCPPRPEALIEGIIELEHQI 112 >gi|119871844|ref|YP_929851.1| NADH-quinone oxidoreductase, B subunit [Pyrobaculum islandicum DSM 4184] gi|119673252|gb|ABL87508.1| NADH-quinone oxidoreductase, B subunit [Pyrobaculum islandicum DSM 4184] Length = 147 Score = 130 bits (326), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 63/142 (44%), Positives = 91/142 (64%), Gaps = 1/142 (0%) Query: 36 KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDV 95 +G + +V ++ W SL ACC VE P YD ERFG P S RQS++ Sbjct: 2 RGAISQAVSRVARWGTKWSLWPPHLVTACCGVEFAHTFGPAYDAERFGMLPIGSLRQSNI 61 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155 +I+ GT+T KMA ++ +YDQMPEP+YVI+MG+CA GG ++ SY +V ++VPV++Y Sbjct: 62 LILEGTITLKMAKFVKYIYDQMPEPKYVIAMGACAIKGGVFYGSYHMVPA-SKVVPVNVY 120 Query: 156 VPGCPPTAEALIYGILLLQKKI 177 V GCPPT EA++ + +QK+I Sbjct: 121 VSGCPPTPEAVLKAVEKIQKQI 142 >gi|257053296|ref|YP_003131129.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Halorhabdus utahensis DSM 12940] gi|256692059|gb|ACV12396.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Halorhabdus utahensis DSM 12940] Length = 183 Score = 130 bits (326), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 61/136 (44%), Positives = 90/136 (66%), Gaps = 5/136 (3%) Query: 45 QLVTWARTGS--LMWMTFGLAC--CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAG 100 +++ WAR S ++ M G +C C +E + A MPRYD+ERFG + +PR +DV++ G Sbjct: 3 RIIDWARNRSPWILHMNCG-SCNGCDIETLDALMPRYDVERFGIQQKDTPRHADVLVATG 61 Query: 101 TLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCP 160 +T +MA L R+Y+QMPEP+ VI+ GSCA GG + Y+ G D ++PVD+YVPGCP Sbjct: 62 PVTKQMAPRLERIYEQMPEPKLVIAAGSCAATGGVFQDCYNCHEGIDDVIPVDMYVPGCP 121 Query: 161 PTAEALIYGILLLQKK 176 + E LI GI+ L ++ Sbjct: 122 ISPETLIDGIVALLEE 137 >gi|12001974|gb|AAG43130.1|AF060512_1 My017 protein [Homo sapiens] Length = 214 Score = 129 bits (325), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 75/156 (48%), Positives = 92/156 (58%), Gaps = 27/156 (17%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 ++V +D LV WAR SL MTFGLACCAVEMM + PRYD++RFG RASPRQSDVMI Sbjct: 62 YVVAKLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQSDVMI 121 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI--- 154 VAGTLTNKMA ALR+ P P + G + +R R++P+ + Sbjct: 122 VAGTLTNKMAPALRK---SPPRP----------DAGAALRGLHGELRQRGRLLPLFLLGG 168 Query: 155 -----------YVPGCPPTAEALIYGILLLQKKIRR 179 P P TAEAL+YGIL LQ+KI+R Sbjct: 169 EGLRPHRARGHLHPRLPTTAEALLYGILQLQRKIKR 204 >gi|320161606|ref|YP_004174831.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit family protein [Anaerolinea thermophila UNI-1] gi|319995460|dbj|BAJ64231.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit family protein [Anaerolinea thermophila UNI-1] Length = 173 Score = 129 bits (324), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 57/139 (41%), Positives = 88/139 (63%), Gaps = 3/139 (2%) Query: 43 VDQLVTWARTGSLMWMTFGLACCA---VEMMQASMPRYDLERFGFAPRASPRQSDVMIVA 99 +D++ WAR S + + C +E++ PRYDLERFG SPR +DV+I Sbjct: 14 LDKVRLWARVNSPWAIHYNSGSCNGCDIEIVATLTPRYDLERFGVKLEGSPRHADVLICT 73 Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGC 159 G +T + L R+Y QMPEP++V+++GSC GG +H Y++ G D ++PVD+++PGC Sbjct: 74 GPVTRQSRDRLLRIYHQMPEPKFVVAVGSCGLSGGVFHGLYNIAGGIDEVLPVDVFIPGC 133 Query: 160 PPTAEALIYGILLLQKKIR 178 PP EA+IYG++ L + +R Sbjct: 134 PPRPEAIIYGLVQLLEGLR 152 >gi|224087817|ref|XP_002194923.1| PREDICTED: similar to NADH-ubiquinone oxidoreductase Fe-S protein 7 [Taeniopygia guttata] Length = 183 Score = 129 bits (323), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 77/169 (45%), Positives = 94/169 (55%), Gaps = 40/169 (23%) Query: 12 SGQSSCSLEKVDADFSRISSEITHKG-FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMM 70 + SS ++K A R S + +G +++ +D LV WAR SL MTFGLACCAVEMM Sbjct: 44 AADSSVQVQKSSAVVPRKSYVPSSRGEYVIAKLDDLVNWARRSSLWPMTFGLACCAVEMM 103 Query: 71 QASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCA 130 + PRYD++RFG RASPRQ+DVMIVAGTLTNKMA ALR+ Sbjct: 104 HMAAPRYDMDRFGVVFRASPRQADVMIVAGTLTNKMAPALRK------------------ 145 Query: 131 NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179 RG CPPTAEAL+YGIL LQ+KI+R Sbjct: 146 ---------KPPCRG------------RCPPTAEALLYGILQLQRKIKR 173 >gi|145592467|ref|YP_001154469.1| NADH-quinone oxidoreductase, B subunit [Pyrobaculum arsenaticum DSM 13514] gi|145284235|gb|ABP51817.1| NADH-quinone oxidoreductase, B subunit [Pyrobaculum arsenaticum DSM 13514] Length = 144 Score = 128 bits (321), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 66/139 (47%), Positives = 89/139 (64%), Gaps = 1/139 (0%) Query: 39 LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIV 98 ++ VD+L W SL ACC VE A YD ERFG P S RQS+++++ Sbjct: 4 ILKVVDRLRRWGTKWSLWPPHLVTACCGVEFGHAFGSAYDAERFGMLPMGSLRQSNIIVI 63 Query: 99 AGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPG 158 GT+T KMA ++ VY+QMPEP+YVI+MG+CA GG ++ SY +V ++VPVD YV G Sbjct: 64 EGTITLKMAKFVKYVYEQMPEPKYVIAMGACAIKGGVFYGSYHMVPA-PKVVPVDGYVSG 122 Query: 159 CPPTAEALIYGILLLQKKI 177 CPPT EAL+ + LQ+KI Sbjct: 123 CPPTPEALLKAVKELQEKI 141 >gi|126460649|ref|YP_001056927.1| NADH-quinone oxidoreductase, B subunit [Pyrobaculum calidifontis JCM 11548] gi|126250370|gb|ABO09461.1| NADH-quinone oxidoreductase, B subunit [Pyrobaculum calidifontis JCM 11548] Length = 145 Score = 128 bits (321), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 65/140 (46%), Positives = 87/140 (62%), Gaps = 1/140 (0%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 L +VD++ W SL ACC VE A YD ERFG P S RQS++++ Sbjct: 4 LLKKTVDKVAKWGTKWSLWPPHLVTACCGVEFGHAFGSAYDAERFGMLPMGSLRQSNIIV 63 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 + GT+T KMA ++ VY+QMPEP+YVI+MG+CA GG ++ SY +V ++VPV YV Sbjct: 64 IEGTITMKMAKFVKYVYEQMPEPKYVIAMGACAIKGGVFYGSYHMVPA-SKVVPVHQYVS 122 Query: 158 GCPPTAEALIYGILLLQKKI 177 GCPPT EAL+ + LQ KI Sbjct: 123 GCPPTPEALLKAVKNLQDKI 142 >gi|326484679|gb|EGE08689.1| NADH-ubiquinone oxidoreductase 20 kDa subunit [Trichophyton equinum CBS 127.97] Length = 204 Score = 127 bits (319), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 60/108 (55%), Positives = 76/108 (70%) Query: 20 EKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDL 79 E+++ E T ++T DQ+ WAR GSL +TFGLACC VEMM SMPRYDL Sbjct: 63 ERLEVPLPSQGEEPTPLRHILTKFDQVANWARQGSLWPLTFGLACCGVEMMAVSMPRYDL 122 Query: 80 ERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMG 127 +R G RASPRQ+DV+IV+GT+TNKM ALR +YDQMP+P++V S G Sbjct: 123 DRMGIIYRASPRQADVLIVSGTVTNKMGPALRLLYDQMPDPKWVTSCG 170 >gi|326471804|gb|EGD95813.1| NADH-ubiquinone oxidoreductase 20 kDa subunit [Trichophyton tonsurans CBS 112818] Length = 204 Score = 127 bits (319), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 60/108 (55%), Positives = 76/108 (70%) Query: 20 EKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDL 79 E+++ E T ++T DQ+ WAR GSL +TFGLACC VEMM SMPRYDL Sbjct: 63 ERLEVPLPSQGEEPTPLRHILTKFDQVANWARQGSLWPLTFGLACCGVEMMAVSMPRYDL 122 Query: 80 ERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMG 127 +R G RASPRQ+DV+IV+GT+TNKM ALR +YDQMP+P++V S G Sbjct: 123 DRMGIIYRASPRQADVLIVSGTVTNKMGPALRLLYDQMPDPKWVTSCG 170 >gi|224035581|gb|ACN36866.1| unknown [Zea mays] Length = 73 Score = 127 bits (319), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 58/63 (92%), Positives = 61/63 (96%) Query: 117 MPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKK 176 MPEPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG+L LQKK Sbjct: 1 MPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGVLQLQKK 60 Query: 177 IRR 179 I R Sbjct: 61 INR 63 >gi|152992439|ref|YP_001358160.1| NADH-quinone oxidoreductase, chain B [Sulfurovum sp. NBC37-1] gi|151424300|dbj|BAF71803.1| NADH-quinone oxidoreductase, chain B [Sulfurovum sp. NBC37-1] Length = 140 Score = 127 bits (319), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 53/120 (44%), Positives = 84/120 (70%) Query: 60 FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119 F CC++EM A PRYD ER+G+ P +PRQ+DV+++ G ++ K+ AL R Y QMPE Sbjct: 4 FCTGCCSLEMAAAMGPRYDWERYGYMPTPTPRQADVLMITGLVSKKILPALLRTYAQMPE 63 Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179 P+YV+++G+C+ GG Y+ S SV++ I+P D+++ GCPP EA+I G+ +++KI+ Sbjct: 64 PKYVVALGACSFDGGPYNDSLSVIKNPTEILPADVFIAGCPPKPEAIIEGLEQVKQKIKN 123 >gi|294646453|ref|ZP_06724094.1| NADH-quinone oxidoreductase, B subunit [Bacteroides ovatus SD CC 2a] gi|292638224|gb|EFF56601.1| NADH-quinone oxidoreductase, B subunit [Bacteroides ovatus SD CC 2a] Length = 115 Score = 127 bits (319), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 53/92 (57%), Positives = 75/92 (81%) Query: 87 RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGC 146 RASPRQ+D+++V GT+TNKMA L+R+YDQMP+P+YV+++G CA GG + SY VV G Sbjct: 2 RASPRQADMIMVCGTITNKMAPVLKRLYDQMPDPKYVVAVGGCAVSGGPFKKSYHVVNGV 61 Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 D+I+PVD+Y+PGCPP EA YG++ LQ+K++ Sbjct: 62 DKILPVDVYIPGCPPRPEAFYYGMMQLQRKVK 93 >gi|326483737|gb|EGE07747.1| NADH dehydrogenase beta subunit [Trichophyton equinum CBS 127.97] Length = 147 Score = 126 bits (317), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 60/108 (55%), Positives = 76/108 (70%) Query: 20 EKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDL 79 E+++ E T ++T DQ+ WAR GSL +TFGLACC VEMM SMPRYDL Sbjct: 6 ERLEVPLPSQGEEPTPLRHILTKFDQVANWARQGSLWPLTFGLACCGVEMMAVSMPRYDL 65 Query: 80 ERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMG 127 +R G RASPRQ+DV+IV+GT+TNKM ALR +YDQMP+P++V S G Sbjct: 66 DRMGIIYRASPRQADVLIVSGTVTNKMGPALRLLYDQMPDPKWVTSCG 113 >gi|115948823|ref|XP_001196585.1| PREDICTED: similar to mitochondrial complex I subunit NDUFS7, partial [Strongylocentrotus purpuratus] Length = 82 Score = 126 bits (316), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 61/76 (80%), Positives = 66/76 (86%) Query: 53 GSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRR 112 SL MTFGLACCAVEMM + PRYD++RFG RASPRQSDVMIVAGTLTNKMA ALR+ Sbjct: 7 SSLWPMTFGLACCAVEMMHFAAPRYDMDRFGVVFRASPRQSDVMIVAGTLTNKMAPALRK 66 Query: 113 VYDQMPEPRYVISMGS 128 VYDQMPEPR+VISMGS Sbjct: 67 VYDQMPEPRWVISMGS 82 >gi|171186236|ref|YP_001795155.1| NADH-quinone oxidoreductase, B subunit [Thermoproteus neutrophilus V24Sta] gi|170935448|gb|ACB40709.1| NADH-quinone oxidoreductase, B subunit [Thermoproteus neutrophilus V24Sta] Length = 147 Score = 125 bits (315), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 62/144 (43%), Positives = 89/144 (61%), Gaps = 1/144 (0%) Query: 36 KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDV 95 KG + +V ++ W SL ACC VE A YD ERFG P S RQS++ Sbjct: 2 KGAISQAVSRVARWGTKWSLWPPHLVTACCGVEFAHAFGSAYDAERFGMLPMGSLRQSNI 61 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155 +I+ GT+T KMA ++ +YDQMPEP+YVI+MG+CA GG ++ SY +V ++VPV Y Sbjct: 62 LILEGTITLKMAKFVKYIYDQMPEPKYVIAMGACAIKGGVFYGSYHMVPA-SKVVPVHAY 120 Query: 156 VPGCPPTAEALIYGILLLQKKIRR 179 + GCPPT EA++ + +Q++I Sbjct: 121 ISGCPPTPEAVLKAVEKVQERISH 144 >gi|224372676|ref|YP_002607048.1| hydrogenase-4 component I [Nautilia profundicola AmH] gi|223589154|gb|ACM92890.1| hydrogenase-4 component I [Nautilia profundicola AmH] Length = 164 Score = 125 bits (315), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 53/117 (45%), Positives = 81/117 (69%) Query: 55 LMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVY 114 L + T G C +E++ A P+YD+ERFG R +P+QSD+++V G +T + LRR+Y Sbjct: 15 LHYNTGGCNGCDIEILAALAPKYDIERFGMLNRGNPKQSDILLVTGPVTKRCRDVLRRLY 74 Query: 115 DQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171 +MPEP+ V++MG+CA+GGG + Y V G D I+PVD+++PGC P EA+I G++ Sbjct: 75 LEMPEPKVVVAMGACAHGGGIFRDFYHVENGVDNIIPVDVWIPGCAPRVEAVIDGMV 131 >gi|117925498|ref|YP_866115.1| NADH dehydrogenase subunit B [Magnetococcus sp. MC-1] gi|117609254|gb|ABK44709.1| Membrane bound protein complex subunit mbxJ [Magnetococcus sp. MC-1] Length = 213 Score = 125 bits (315), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 63/155 (40%), Positives = 91/155 (58%) Query: 25 DFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF 84 D+ ++ G + V+ L WAR+ S+ + FG C A+EM PR+D R+G Sbjct: 25 DYFCEATPTVQTGEYLQIVEDLFNWARSNSIWVLGFGTGCGAIEMRPLMTPRFDAYRYGV 84 Query: 85 APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR 144 RA+PRQS++ IV+G L+ K + R Y+QM P+YV+ +GSC GG Y SY+ ++ Sbjct: 85 QWRATPRQSNLFIVSGYLSVKTLKRVVRAYEQMQSPKYVMGLGSCTINGGMYWDSYNTIK 144 Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179 D +PVD+YV GC P EAL+ GI L+K IR Sbjct: 145 QLDDYLPVDLYVTGCMPRPEALLSGIEALKKIIRE 179 >gi|327304110|ref|XP_003236747.1| NADH-ubiquinone oxidoreductase subunit B [Trichophyton rubrum CBS 118892] gi|326462089|gb|EGD87542.1| NADH-ubiquinone oxidoreductase subunit B [Trichophyton rubrum CBS 118892] Length = 182 Score = 125 bits (314), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 58/105 (55%), Positives = 75/105 (71%) Query: 20 EKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDL 79 ++++ E T ++T DQ+ WAR GSL +TFGLACC VEMM SMPRYDL Sbjct: 63 KRLEVPLPSQGEEPTPLRHILTKFDQVANWARQGSLWPLTFGLACCGVEMMAVSMPRYDL 122 Query: 80 ERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 +R G RASPRQ+DV+IV+GT+TNKM ALR +YDQMP+P++VI Sbjct: 123 DRMGIIYRASPRQADVLIVSGTVTNKMGPALRLLYDQMPDPKWVI 167 >gi|116191457|ref|XP_001221541.1| hypothetical protein CHGG_05446 [Chaetomium globosum CBS 148.51] gi|88181359|gb|EAQ88827.1| hypothetical protein CHGG_05446 [Chaetomium globosum CBS 148.51] Length = 189 Score = 125 bits (314), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 69/140 (49%), Positives = 79/140 (56%), Gaps = 44/140 (31%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 + ++++D L+ WAR GSL M+FGLACCA+EMM SMPRYD +R G RASPRQSDVMI Sbjct: 81 YALSTLDGLINWARQGSLWPMSFGLACCAIEMMHLSMPRYDNDRQGIIFRASPRQSDVMI 140 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAG G DRIVPVDIYVP Sbjct: 141 VAG--------------------------------------------GVDRIVPVDIYVP 156 Query: 158 GCPPTAEALIYGILLLQKKI 177 GCPPTAEAL YGI LQKK+ Sbjct: 157 GCPPTAEALQYGIFQLQKKM 176 >gi|297720477|ref|NP_001172600.1| Os01g0791600 [Oryza sativa Japonica Group] gi|255673769|dbj|BAH91330.1| Os01g0791600 [Oryza sativa Japonica Group] Length = 379 Score = 125 bits (314), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 53/93 (56%), Positives = 75/93 (80%), Gaps = 1/93 (1%) Query: 76 RYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY 135 R+D +R+G PR+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG Sbjct: 152 RFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGM 211 Query: 136 YHY-SYSVVRGCDRIVPVDIYVPGCPPTAEALI 167 + SYS VRG D+++PVD+Y+PGCPP EA+I Sbjct: 212 FSTDSYSTVRGVDKLIPVDVYLPGCPPKPEAVI 244 >gi|115691401|ref|XP_794478.2| PREDICTED: similar to mitochondrial complex I subunit NDUFS7, partial [Strongylocentrotus purpuratus] Length = 81 Score = 124 bits (312), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 60/74 (81%), Positives = 65/74 (87%) Query: 54 SLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRV 113 SL MTFGLACCAVEMM + PRYD++RFG RASPRQSDVMIVAGTLTNKMA ALR+V Sbjct: 8 SLWPMTFGLACCAVEMMHFAAPRYDMDRFGVVFRASPRQSDVMIVAGTLTNKMAPALRKV 67 Query: 114 YDQMPEPRYVISMG 127 YDQMPEPR+VISMG Sbjct: 68 YDQMPEPRWVISMG 81 >gi|325969611|ref|YP_004245803.1| NADH-quinone oxidoreductase subunits B and C [Vulcanisaeta moutnovskia 768-28] gi|323708814|gb|ADY02301.1| NADH-quinone oxidoreductase subunits B and C [Vulcanisaeta moutnovskia 768-28] Length = 419 Score = 124 bits (311), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 62/130 (47%), Positives = 83/130 (63%), Gaps = 1/130 (0%) Query: 49 WARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108 W SL + ACC VEM P YD ER G P SPRQ+++++V GT++ KMA Sbjct: 13 WGTKYSLWPVHLVTACCGVEMAHTWNPTYDAERLGSLPWHSPRQTNLILVEGTISFKMAR 72 Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168 LR +++QM +P+YVI+MGSCA GG + SY V ++IVPVD Y GCPPT EA+I Sbjct: 73 VLRYIWEQMSDPKYVIAMGSCAAEGGVFWNSYHAV-PVNKIVPVDAYAIGCPPTPEAVIQ 131 Query: 169 GILLLQKKIR 178 I ++Q+KI Sbjct: 132 MIRIVQRKIE 141 >gi|307595389|ref|YP_003901706.1| NADH-quinone oxidoreductase subunit B [Vulcanisaeta distributa DSM 14429] gi|307550590|gb|ADN50655.1| NADH-quinone oxidoreductase, B subunit [Vulcanisaeta distributa DSM 14429] Length = 420 Score = 124 bits (311), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 62/140 (44%), Positives = 87/140 (62%), Gaps = 1/140 (0%) Query: 39 LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIV 98 L +++ W SL + ACC VEM P YD ER G P +PRQ+++++V Sbjct: 3 LDKALEPYKKWGTKYSLWPVHLVTACCGVEMAHTWNPTYDAERLGSLPWHAPRQTNLILV 62 Query: 99 AGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPG 158 GT+T KMA LR V++QM +P+YVI+MGSCA GG + SY V ++I+P+D Y G Sbjct: 63 EGTITFKMARVLRYVWEQMSDPKYVIAMGSCAAEGGIFWNSYHAV-PVNKIIPIDAYAIG 121 Query: 159 CPPTAEALIYGILLLQKKIR 178 CPPT EA+I I ++Q+KI Sbjct: 122 CPPTPEAVIQMIKIVQRKIE 141 >gi|254166707|ref|ZP_04873561.1| NADH-quinone oxidoreductase, B subunit subfamily [Aciduliprofundum boonei T469] gi|254167366|ref|ZP_04874218.1| NADH-quinone oxidoreductase, B subunit subfamily [Aciduliprofundum boonei T469] gi|289596350|ref|YP_003483046.1| NADH-quinone oxidoreductase, B subunit [Aciduliprofundum boonei T469] gi|197623629|gb|EDY36192.1| NADH-quinone oxidoreductase, B subunit subfamily [Aciduliprofundum boonei T469] gi|197624317|gb|EDY36878.1| NADH-quinone oxidoreductase, B subunit subfamily [Aciduliprofundum boonei T469] gi|289534137|gb|ADD08484.1| NADH-quinone oxidoreductase, B subunit [Aciduliprofundum boonei T469] Length = 146 Score = 123 bits (309), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 52/116 (44%), Positives = 79/116 (68%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E++ A PRYD+ERFG SPR +D ++V G +T M ++R Y+Q+P+P+ VI Sbjct: 26 CDIEILAALTPRYDVERFGIKLVGSPRHADALLVTGPVTRDMEDKVKRFYEQVPDPKVVI 85 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 +GSC GG +H SY++V D+++PVD+YVPGCPP EA+I G++ K+ R+ Sbjct: 86 VIGSCGISGGVFHESYNLVGPVDKVIPVDVYVPGCPPRPEAIIDGVVKAWMKLERL 141 >gi|296242362|ref|YP_003649849.1| NADH-quinone oxidoreductase subunit B [Thermosphaera aggregans DSM 11486] gi|296094946|gb|ADG90897.1| NADH-quinone oxidoreductase, B subunit [Thermosphaera aggregans DSM 11486] Length = 155 Score = 123 bits (308), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 55/118 (46%), Positives = 78/118 (66%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E++ + P YD ERFG S R D+++V G LT K LRR+YDQMP P++V+ Sbjct: 35 CDIEVLASITPLYDPERFGVKLAPSIRHGDILVVTGALTKKAGERLRRLYDQMPNPKFVV 94 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182 ++G+CA GG ++ SYSV G D+ VPV +Y+PGCPP EA++ GI+ L KK+ G Sbjct: 95 AVGACAVDGGVFYKSYSVEGGADKAVPVAMYIPGCPPRPEAILDGIVKLLKKLEESGE 152 >gi|221104717|ref|XP_002169223.1| PREDICTED: similar to CG9172 CG9172-PA, partial [Hydra magnipapillata] Length = 70 Score = 123 bits (308), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 58/70 (82%), Positives = 63/70 (90%) Query: 58 MTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQM 117 MTFGLACCAVEMM + PRYD++RFG RASPRQ+DVMIVAGTLTNKMA ALRRVYDQM Sbjct: 1 MTFGLACCAVEMMHFAAPRYDMDRFGVVFRASPRQADVMIVAGTLTNKMAPALRRVYDQM 60 Query: 118 PEPRYVISMG 127 PEPR+VISMG Sbjct: 61 PEPRWVISMG 70 >gi|323700400|ref|ZP_08112312.1| NADH dehydrogenase (quinone) [Desulfovibrio sp. ND132] gi|323460332|gb|EGB16197.1| NADH dehydrogenase (quinone) [Desulfovibrio desulfuricans ND132] Length = 147 Score = 122 bits (307), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 53/121 (43%), Positives = 82/121 (67%), Gaps = 1/121 (0%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E++ P YD+ERFG +P+ +DV++V GT+ ++ L+ +YDQMPEP+ VI Sbjct: 27 CDIEVLACLTPLYDVERFGIVHVGNPKHADVLLVTGTVNHRNKKVLKNLYDQMPEPKAVI 86 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILL-LQKKIRRVGNV 183 ++GSC N GG + +Y+VV G D+++PVD+YVPGCP EA+I G++ L K ++V Sbjct: 87 AIGSCGNTGGIFREAYNVVGGVDKVIPVDVYVPGCPAKPEAIIDGVVAGLAKFAQKVEEA 146 Query: 184 K 184 K Sbjct: 147 K 147 >gi|149194384|ref|ZP_01871481.1| NADH:ubiquinone oxidoreductase 20 kD subunit and related Fe-S oxidoreductase [Caminibacter mediatlanticus TB-2] gi|149135559|gb|EDM24038.1| NADH:ubiquinone oxidoreductase 20 kD subunit and related Fe-S oxidoreductase [Caminibacter mediatlanticus TB-2] Length = 164 Score = 122 bits (307), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 53/117 (45%), Positives = 80/117 (68%) Query: 55 LMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVY 114 L + T G C +E++ P+YD+ERFG R +P+QSD+++V G +T LRR+Y Sbjct: 15 LHYNTGGCNGCDIEILATLAPKYDIERFGALNRGNPKQSDILLVTGPVTMHCKDVLRRLY 74 Query: 115 DQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171 +MPEP+ V++MG+C +GGG + + Y+V G D I+PVD+++PGC P EALI GI+ Sbjct: 75 LEMPEPKVVVAMGACGHGGGVFRHLYNVNDGVDSIIPVDVWIPGCCPRPEALIDGIV 131 >gi|256380641|ref|YP_003104301.1| NADH-quinone oxidoreductase, B subunit [Actinosynnema mirum DSM 43827] gi|255924944|gb|ACU40455.1| NADH-quinone oxidoreductase, B subunit [Actinosynnema mirum DSM 43827] Length = 137 Score = 122 bits (306), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 57/129 (44%), Positives = 83/129 (64%) Query: 49 WARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108 W T + + GLACC VE+M A +DL+ G P S ++ V++V+GT+T+ M Sbjct: 8 WGTTYRVTVLDLGLACCGVEVMAALEGGHDLDALGVDPVRSAGEAHVLVVSGTVTDVMLP 67 Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168 A+ Y +MPEPRYV+S+G+C+N GG Y SYSV +G D+ +PV + VPGCPP EAL+ Sbjct: 68 AVLAAYQEMPEPRYVLSVGACSNTGGPYWDSYSVTKGIDQALPVHVAVPGCPPRPEALLE 127 Query: 169 GILLLQKKI 177 G+ L + + Sbjct: 128 GLAALHRMV 136 >gi|22002572|gb|AAM82723.1| NdhK [Synechococcus elongatus PCC 7942] Length = 235 Score = 122 bits (305), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 63/150 (42%), Positives = 92/150 (61%), Gaps = 4/150 (2%) Query: 32 EITH---KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88 EIT + ++T++D L WAR SL + +G ACC +E R+D +RF + Sbjct: 17 EITQGLSENVILTTLDDLYNWARLSSLWPLMYGTACCFIEFAALIGSRFDFDRFAWCLVV 76 Query: 89 SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCD 147 + V +T KMA AL R+Y+QMPEP+YVI+MG+C GG + S + VRG D Sbjct: 77 ASAGRFVDHKPVPVTMKMAPALVRLYEQMPEPKYVIAMGACTITGGMFSADSTTTVRGVD 136 Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 +++PVD+Y+PGCPP EA+I I+ L+KK+ Sbjct: 137 KLLPVDVYIPGCPPRPEAIIDAIVKLRKKV 166 >gi|228903773|ref|ZP_04067890.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors [Bacillus thuringiensis IBL 4222] gi|228924034|ref|ZP_04087310.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228942446|ref|ZP_04104983.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228975378|ref|ZP_04135934.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|229147840|ref|ZP_04276181.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors [Bacillus cereus BDRD-ST24] gi|229199422|ref|ZP_04326086.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors [Bacillus cereus m1293] gi|228584050|gb|EEK42204.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors [Bacillus cereus m1293] gi|228635490|gb|EEK91979.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors [Bacillus cereus BDRD-ST24] gi|228784360|gb|EEM32383.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228817188|gb|EEM63276.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228835524|gb|EEM80889.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228855862|gb|EEN00405.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors [Bacillus thuringiensis IBL 4222] Length = 95 Score = 122 bits (305), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 55/83 (66%), Positives = 69/83 (83%) Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155 MIV+GT+T KMA +RR+YDQMPEP++VI+MGSCA GG Y SY+VV+G D+IVPVD+Y Sbjct: 1 MIVSGTVTKKMAPIVRRLYDQMPEPKWVIAMGSCATAGGPYVNSYAVVKGVDQIVPVDVY 60 Query: 156 VPGCPPTAEALIYGILLLQKKIR 178 +PGCPP ALIYGI L++KIR Sbjct: 61 IPGCPPNPAALIYGINKLKEKIR 83 >gi|327400429|ref|YP_004341268.1| NADH-quinone oxidoreductase subunit B [Archaeoglobus veneficus SNP6] gi|327315937|gb|AEA46553.1| NADH-quinone oxidoreductase, B subunit [Archaeoglobus veneficus SNP6] Length = 362 Score = 122 bits (305), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 61/131 (46%), Positives = 80/131 (61%), Gaps = 1/131 (0%) Query: 49 WARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108 W SL + ACC VE+ YD ER+G RQ++++IV G ++ KMA Sbjct: 24 WGAKWSLWAVHLVTACCGVELAHTYASGYDAERWGSLNFGMMRQTNLIIVEGAISKKMAR 83 Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168 ALR ++QMPEP++VI MG+C GG + SY + R + IVPVD Y+PGCPPT EALI Sbjct: 84 ALRITWEQMPEPKFVIVMGACGIEGGLFWNSYHIARPSE-IVPVDYYIPGCPPTPEALIR 142 Query: 169 GILLLQKKIRR 179 I LQKKI + Sbjct: 143 AIRALQKKIEK 153 >gi|187251539|ref|YP_001876021.1| NiFe-hydrogenase III small subunit [Elusimicrobium minutum Pei191] gi|186971699|gb|ACC98684.1| NiFe-hydrogenase III small subunit [Elusimicrobium minutum Pei191] Length = 149 Score = 122 bits (305), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 56/133 (42%), Positives = 85/133 (63%), Gaps = 3/133 (2%) Query: 44 DQLVTWARTGS---LMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAG 100 +Q+V WAR S L + + C +E + A P++D+ERFG +PR +DVM+V+G Sbjct: 6 EQVVAWARRKSPWILHYNSGSCNGCDIETVAALTPKFDVERFGILQHGTPRHADVMVVSG 65 Query: 101 TLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCP 160 ++ + L R+Y+QM EP++V+++G+CA GG Y V+ G D+I+PV Y+PGCP Sbjct: 66 AVSRQQEKRLLRIYNQMAEPKFVVAVGACACSGGVLQGCYGVLGGVDKILPVSAYIPGCP 125 Query: 161 PTAEALIYGILLL 173 P EALI GI+ L Sbjct: 126 PRPEALIDGIVKL 138 >gi|317154076|ref|YP_004122124.1| NADH dehydrogenase (quinone) [Desulfovibrio aespoeensis Aspo-2] gi|316944327|gb|ADU63378.1| NADH dehydrogenase (quinone) [Desulfovibrio aespoeensis Aspo-2] Length = 147 Score = 121 bits (304), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 48/108 (44%), Positives = 77/108 (71%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E++ P YD+ERFG +P+ +DV++V GT+ ++ L+ +YDQMPEP+ VI Sbjct: 27 CDIEVLACLTPLYDVERFGIINVGNPKHADVLLVTGTVNHRNKKVLKNIYDQMPEPKAVI 86 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILL 172 ++G+C N GG + +Y+VV G D+++PVD+YVPGCP EA+I G+++ Sbjct: 87 AIGACGNTGGVFRDAYNVVGGVDKVIPVDVYVPGCPAKPEAIIDGVVV 134 >gi|332796230|ref|YP_004457730.1| NADH-quinone oxidoreductase subunit B [Acidianus hospitalis W1] gi|332693965|gb|AEE93432.1| NADH-quinone oxidoreductase, B subunit [Acidianus hospitalis W1] Length = 170 Score = 121 bits (304), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 64/142 (45%), Positives = 90/142 (63%) Query: 43 VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL 102 + L W SL F +CC E + R+D ERFG P +S RQS+++++ GT+ Sbjct: 28 IRDLRDWGTAFSLWPPHFTTSCCGAEFGAFAAARFDAERFGMLPFSSSRQSNILVIEGTM 87 Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162 T KMA A R VY+QMPEP+YV+++G+C+ GG + SY+ V + +PVDIYVPGCP Sbjct: 88 TRKMARAARIVYEQMPEPKYVMAIGACSLEGGIFWNSYNTVLPSEVGIPVDIYVPGCPIR 147 Query: 163 AEALIYGILLLQKKIRRVGNVK 184 EA+ G+L+LQKKIR +K Sbjct: 148 PEAIARGLLMLQKKIRHQSTIK 169 >gi|228994019|ref|ZP_04153920.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors [Bacillus pseudomycoides DSM 12442] gi|229000087|ref|ZP_04159657.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors [Bacillus mycoides Rock3-17] gi|228759624|gb|EEM08600.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors [Bacillus mycoides Rock3-17] gi|228765667|gb|EEM14320.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors [Bacillus pseudomycoides DSM 12442] Length = 95 Score = 121 bits (304), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 55/83 (66%), Positives = 69/83 (83%) Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155 MIV+GT+T KMA +RR+YDQMPEP++VI+MGSCA GG Y SY+VV+G D+IVPVD+Y Sbjct: 1 MIVSGTVTKKMAPIVRRLYDQMPEPKWVIAMGSCATAGGPYVNSYAVVKGVDQIVPVDVY 60 Query: 156 VPGCPPTAEALIYGILLLQKKIR 178 +PGCPP ALIYGI L++KIR Sbjct: 61 IPGCPPNPAALIYGINKLKEKIR 83 >gi|229014468|ref|ZP_04171586.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors [Bacillus mycoides DSM 2048] gi|228746818|gb|EEL96703.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors [Bacillus mycoides DSM 2048] Length = 95 Score = 121 bits (304), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 55/83 (66%), Positives = 69/83 (83%) Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155 MIV+GT+T KMA +RR+YDQMPEP++VI+MGSCA GG Y SY+VV+G D+IVPVD+Y Sbjct: 1 MIVSGTVTKKMAPIVRRLYDQMPEPKWVIAMGSCATAGGPYVNSYAVVKGVDQIVPVDVY 60 Query: 156 VPGCPPTAEALIYGILLLQKKIR 178 +PGCPP ALIYGI L++KIR Sbjct: 61 IPGCPPNPAALIYGINKLKEKIR 83 >gi|322419366|ref|YP_004198589.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Geobacter sp. M18] gi|320125753|gb|ADW13313.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Geobacter sp. M18] Length = 164 Score = 121 bits (304), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 52/117 (44%), Positives = 78/117 (66%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E++ P YD+ERFG +P+ +DV++V GT+ ++ L +YDQMPEP+ V+ Sbjct: 27 CDIEVLACLTPLYDVERFGILNVGNPKHADVLVVTGTVNHRNRKVLENIYDQMPEPKVVV 86 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181 ++G+C GG + S++VV G DR+VPVD YVPGC P EA+I GI+L +K+ G Sbjct: 87 AVGACGCSGGVFRDSFNVVGGVDRVVPVDAYVPGCAPKPEAIIDGIVLALEKLAEKG 143 >gi|212224742|ref|YP_002307978.1| membrane bound hydrogenase, NiFe-hydrogenase small subunit [Thermococcus onnurineus NA1] gi|212009699|gb|ACJ17081.1| membrane bound hydrogenase, NiFe-hydrogenase small subunit [Thermococcus onnurineus NA1] Length = 175 Score = 120 bits (302), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 58/162 (35%), Positives = 95/162 (58%), Gaps = 2/162 (1%) Query: 21 KVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLAC--CAVEMMQASMPRYD 78 KV AD +R + + + L + QL + ++ +C C +E++ A PRYD Sbjct: 4 KVPADQNRTNGTTSEREMLEKRIAQLCRFIGRSPWVFHVNSGSCNGCDIEIIAALTPRYD 63 Query: 79 LERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY 138 ERFG SPR +DV++V G +T++ ++ VY+Q P+P+ VI++GSC GG ++ Sbjct: 64 AERFGVKLVGSPRHADVLLVTGPVTDQSLERVKLVYEQTPDPKIVIAVGSCPTGGSVFYE 123 Query: 139 SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 S I+PVD+YVPGCPP EA++YG++L +K+ ++ Sbjct: 124 SPFTNAPLSNIIPVDVYVPGCPPRPEAILYGVVLALEKLAKI 165 >gi|297616846|ref|YP_003702005.1| NADH dehydrogenase (quinone) [Syntrophothermus lipocalidus DSM 12680] gi|297144683|gb|ADI01440.1| NADH dehydrogenase (quinone) [Syntrophothermus lipocalidus DSM 12680] Length = 165 Score = 120 bits (301), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 57/137 (41%), Positives = 82/137 (59%), Gaps = 3/137 (2%) Query: 46 LVTWARTGSLMWMTF---GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL 102 LV AR+ S M F G C++E+ P YDLERFG +P+ +DV++V GT+ Sbjct: 3 LVHRARSKSPWVMHFDTAGCNGCSIEVFACFTPLYDLERFGIVNVGNPKHADVLLVTGTV 62 Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162 +K L+ VYDQM P+ ++++G CA G +H SY+ + G D++VPVD+YVPGC Sbjct: 63 NHKAKRVLKTVYDQMNHPKVIVAVGICATSGNVFHQSYNCLGGVDKVVPVDVYVPGCAAR 122 Query: 163 AEALIYGILLLQKKIRR 179 E +I GI L KK+ Sbjct: 123 PEVIIDGIFLALKKLEE 139 >gi|327310885|ref|YP_004337782.1| NADH-quinone oxidoreductase subunits B and D [Thermoproteus uzoniensis 768-20] gi|326947364|gb|AEA12470.1| NADH-quinone oxidoreductase subunits B and D [Thermoproteus uzoniensis 768-20] Length = 561 Score = 120 bits (301), Expect = 8e-26, Method: Composition-based stats. Identities = 58/129 (44%), Positives = 82/129 (63%), Gaps = 1/129 (0%) Query: 49 WARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108 W SL ACC VE+ A P YD ER G P S R S+++I+ GT+T KMA Sbjct: 16 WGTKWSLWPPHLVTACCGVELAHAFGPAYDAERLGVLPMPSARHSNLLIIEGTITLKMAK 75 Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168 ++ VY+QMPEP+YV++MG+CA GG ++ SY +V + +V VD+YV GCPPT EAL+ Sbjct: 76 FVKWVYEQMPEPKYVVAMGACAIKGGVFYGSYHMVPASN-VVGVDVYVSGCPPTPEALLK 134 Query: 169 GILLLQKKI 177 + +Q+ + Sbjct: 135 AVEKVQENV 143 >gi|242399265|ref|YP_002994689.1| Membrane-bound hydrogenase MBH 2, subunit Mbh2J (hydrogenase subunit) [Thermococcus sibiricus MM 739] gi|242265658|gb|ACS90340.1| Membrane-bound hydrogenase MBH 2, subunit Mbh2J (hydrogenase subunit) [Thermococcus sibiricus MM 739] Length = 148 Score = 120 bits (300), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 50/116 (43%), Positives = 76/116 (65%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E++ A PRYD ERFG SPR +DV++V G + A LRR+Y+QMP+P+ VI Sbjct: 24 CDIEIIAALTPRYDAERFGIKLVGSPRHADVLLVTGAIPKDFADKLRRIYEQMPDPKAVI 83 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 +G+C GG ++ SY++ D I+PVD+YVPGCPP EA++ ++ K+ ++ Sbjct: 84 VIGNCGTSGGVFYDSYNIAGPIDEIIPVDVYVPGCPPRPEAIVDAVVKAWLKLEKL 139 >gi|218883730|ref|YP_002428112.1| NADH-quinone oxidoreductase, B subunit [Desulfurococcus kamchatkensis 1221n] gi|218765346|gb|ACL10745.1| NADH-quinone oxidoreductase, B subunit [Desulfurococcus kamchatkensis 1221n] Length = 160 Score = 119 bits (298), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 54/114 (47%), Positives = 77/114 (67%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E++ A P YD ERFG S R D+++V G +T K A L+R+YDQMP P++VI Sbjct: 35 CDIEVLAAITPLYDPERFGVKLAPSIRHGDILVVTGAVTKKAAERLKRLYDQMPCPKFVI 94 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 ++G+CA GG + SY V+ G D+ VPV +Y+PGCPP EA++ GI+ L KK+ Sbjct: 95 AVGACACTGGVFSKSYPVLAGADKAVPVSMYIPGCPPRPEAILDGIVKLLKKLE 148 >gi|239904914|ref|YP_002951652.1| Ech hydrogenase subunit EchC [Desulfovibrio magneticus RS-1] gi|239794777|dbj|BAH73766.1| Ech hydrogenase subunit EchC [Desulfovibrio magneticus RS-1] Length = 147 Score = 119 bits (298), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 47/116 (40%), Positives = 79/116 (68%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E++ P YD+ERFG +P+ +DV++V GT+ + L+ +YDQMP P+ VI Sbjct: 27 CDIEVLACLTPLYDIERFGILNIGNPKHADVLLVTGTVNQRNKHVLKNIYDQMPTPKAVI 86 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 ++G+C GG + +Y+VV G D+++PVD+YVPGCP EA+I G++ +K++++ Sbjct: 87 AIGACGCSGGVFREAYNVVGGVDKVIPVDVYVPGCPARPEAIIDGVVAALEKVKKL 142 >gi|126465551|ref|YP_001040660.1| NADH-quinone oxidoreductase, B subunit [Staphylothermus marinus F1] gi|126014374|gb|ABN69752.1| NADH-quinone oxidoreductase, B subunit [Staphylothermus marinus F1] Length = 179 Score = 119 bits (297), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 58/132 (43%), Positives = 79/132 (59%) Query: 46 LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNK 105 W R+ S+ + + AC A+E+ M D ER+G P SPRQ+DV+++ G +T K Sbjct: 11 FAEWVRSRSIWMIHYCSACGAIELPPNMMAPLDAERWGIMPAPSPRQADVLVIMGYVTKK 70 Query: 106 MASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEA 165 L R+Y QMPEPRYV+ +C GG Y SYS V+ D +PVD++VPGC P AE Sbjct: 71 TLKVLMRLYHQMPEPRYVMVGCNCPATGGLYWDSYSTVKAVDEFLPVDVWVPGCMPRAED 130 Query: 166 LIYGILLLQKKI 177 + G L L+KKI Sbjct: 131 WLQGFLKLRKKI 142 >gi|156937336|ref|YP_001435132.1| NADH-quinone oxidoreductase, B subunit [Ignicoccus hospitalis KIN4/I] gi|156566320|gb|ABU81725.1| NADH-quinone oxidoreductase, B subunit [Ignicoccus hospitalis KIN4/I] Length = 207 Score = 118 bits (296), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 61/162 (37%), Positives = 91/162 (56%), Gaps = 13/162 (8%) Query: 26 FSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA 85 F ++S E+ K V + + W+R SL + G+ CCA+EMMQA+ +D ER G Sbjct: 6 FKKVSRELIKKS---APVKEALKWSRRNSLWLLHLGIMCCAIEMMQAAFAFHDFERLGVL 62 Query: 86 PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRG 145 RA+PRQ DV+++ G + K+A LRR++ Q P PR+VI MG CA GG + S V+ G Sbjct: 63 ARATPRQVDVILINGPVNRKLAERLRRLFMQTPGPRFVIVMGECAINGGPWWQSDYVLDG 122 Query: 146 CDRIVP-------VDIYV---PGCPPTAEALIYGILLLQKKI 177 ++ D++V GCPP E L+ IL +++ I Sbjct: 123 IHEVIESLPEEYRKDVHVVNLAGCPPRPEGLLRAILKMEELI 164 >gi|206890862|ref|YP_002248820.1| hydrogenase-4 component I [Thermodesulfovibrio yellowstonii DSM 11347] gi|206742800|gb|ACI21857.1| hydrogenase-4 component I [Thermodesulfovibrio yellowstonii DSM 11347] Length = 156 Score = 118 bits (295), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 50/118 (42%), Positives = 79/118 (66%), Gaps = 4/118 (3%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E++ P YD+ERFG +SPR +D ++++G +T ++ VY+ PEP+ VI Sbjct: 29 CDIELLDVLTPYYDIERFGMKAVSSPRHADALVISGPVTRPTVEFVKSVYEATPEPKIVI 88 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKKIR 178 ++GSCA GG + SY+VV G D+I+PV +Y+PGCPP EA+++GI + +KKI+ Sbjct: 89 ALGSCATAGGIWFDSYNVVGGVDKIIPVHLYIPGCPPRPEAILFGIAQALGISKKKIK 146 >gi|262366272|gb|ACY62829.1| NADH dehydrogenase I chain B [Yersinia pestis D182038] Length = 145 Score = 118 bits (295), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 57/103 (55%), Positives = 75/103 (72%), Gaps = 5/103 (4%) Query: 75 PRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGG 134 PR+ E RASPRQ+D M+VAGT KMA ++R+Y+QM EP++VISMG+CAN GG Sbjct: 4 PRFGAEVL----RASPRQADFMVVAGTCFTKMAPVIQRLYEQMLEPKWVISMGACANSGG 59 Query: 135 YYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 Y YSVV+G D+ +PVD+Y+PGCPP EA + +LLLQ+ I Sbjct: 60 MYDI-YSVVQGVDKFLPVDVYIPGCPPRPEAYMQALLLLQESI 101 >gi|118581926|ref|YP_903176.1| NADH-quinone oxidoreductase subunit B [Pelobacter propionicus DSM 2379] gi|118504636|gb|ABL01119.1| NADH-quinone oxidoreductase, B subunit [Pelobacter propionicus DSM 2379] Length = 144 Score = 117 bits (294), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 54/140 (38%), Positives = 90/140 (64%), Gaps = 3/140 (2%) Query: 42 SVDQLVTWARTGSLMWMTFGL-AC--CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIV 98 ++D+LVTWAR S + F AC C +E++ + PR+DLERFG + +PR +DV++ Sbjct: 3 ALDKLVTWARIKSPWVIHFNTGACNGCDIEIVDSLTPRFDLERFGIQLKGTPRHADVLLC 62 Query: 99 AGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPG 158 +G +T + L R+Y+QM +P++VI++G+CA G + Y+V+ G D ++PV Y+PG Sbjct: 63 SGPVTRQTKDRLLRIYEQMADPKFVIAVGTCACSAGVFQGCYNVLGGTDTVLPVSAYIPG 122 Query: 159 CPPTAEALIYGILLLQKKIR 178 C EA+I G++ L ++ Sbjct: 123 CAARPEAIIDGVVKLLSTLK 142 >gi|303248163|ref|ZP_07334427.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfovibrio fructosovorans JJ] gi|302490427|gb|EFL50336.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfovibrio fructosovorans JJ] Length = 147 Score = 117 bits (294), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 47/114 (41%), Positives = 77/114 (67%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E++ P YD+ERFG +P+ +DV++V GT+ + L+ +YDQMP P+ VI Sbjct: 27 CDIEVLACLTPLYDIERFGIVNVGNPKHADVLLVTGTVNQRNKHVLKNIYDQMPGPKAVI 86 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 ++G+C GG + +Y+VV G D+++PVD+YVPGCP EA+I G++ +K++ Sbjct: 87 AIGACGCTGGVFREAYNVVGGVDKVIPVDVYVPGCPARPEAIIDGVVAALEKVK 140 >gi|283853893|ref|ZP_06371106.1| NADH-quinone oxidoreductase, B subunit [Desulfovibrio sp. FW1012B] gi|283570716|gb|EFC18763.1| NADH-quinone oxidoreductase, B subunit [Desulfovibrio sp. FW1012B] Length = 147 Score = 117 bits (294), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 47/114 (41%), Positives = 78/114 (68%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E++ P YD+ERFG +P+ +DV++V GT+ ++ L+ +YDQMP P+ VI Sbjct: 27 CDIEVLACLTPLYDIERFGIINVGNPKHADVLLVTGTVNHRNKHVLKNIYDQMPGPKAVI 86 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 ++G+C GG + +Y+VV G D+++PVD+YVPGCP EA+I G++ +K++ Sbjct: 87 AIGACGCTGGVFREAYNVVGGVDKVIPVDVYVPGCPARPEAIIDGVVAALEKVK 140 >gi|57642024|ref|YP_184502.1| membrane bound hydrogenase, NiFe-hydrogenase small subunit [Thermococcus kodakarensis KOD1] gi|57160348|dbj|BAD86278.1| membrane bound hydrogenase, NiFe-hydrogenase small subunit [Thermococcus kodakarensis KOD1] Length = 176 Score = 117 bits (294), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 49/116 (42%), Positives = 79/116 (68%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E++ A PRYD ERFG SPR +D+++V G +TN+ ++ VY+Q P+P+ VI Sbjct: 50 CDIEIIAALTPRYDAERFGVKLVGSPRHADILVVTGPVTNQSLERVKLVYEQTPDPKIVI 109 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 ++G+C GG ++ S DR++PVD+YVPGCPP EA+++G++L +K+ R+ Sbjct: 110 AVGACPTGGSVFYESPFTNAPLDRVIPVDVYVPGCPPRPEAILHGVVLALEKLARM 165 >gi|14591227|ref|NP_143304.1| NADH-ubiquinone oxidoreductase subunit [Pyrococcus horikoshii OT3] gi|3257858|dbj|BAA30541.1| 173aa long hypothetical NADH-ubiquinone oxidoreductase subunit [Pyrococcus horikoshii OT3] Length = 173 Score = 117 bits (294), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 49/116 (42%), Positives = 79/116 (68%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E++ A PRYD ERFG SPR +D+++V G +TN+ ++ VY+Q P+P+ VI Sbjct: 46 CDIEIIAALTPRYDAERFGVKLVGSPRHADILLVTGPVTNQSLERVKLVYEQTPDPKIVI 105 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 ++GSCA GG ++ S D ++PVD++VPGCPP EA++YG++L +K+ ++ Sbjct: 106 AVGSCATGGSVFYESPFTNAPLDNVIPVDVFVPGCPPRPEAILYGVVLALEKLAKM 161 >gi|14520931|ref|NP_126406.1| CO-induced hydrogenase related, subunit L [Pyrococcus abyssi GE5] gi|5458148|emb|CAB49637.1| NADH ubiquinone oxidoreductase subunit [Pyrococcus abyssi GE5] Length = 170 Score = 117 bits (293), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 49/116 (42%), Positives = 79/116 (68%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E++ A PRYD ERFG SPR +D+++V G +TN+ ++ VY+Q PEP+ VI Sbjct: 43 CDIEIIAALTPRYDAERFGVKLVGSPRHADILLVTGPVTNQSLERVKLVYEQTPEPKIVI 102 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 ++GSC GG ++ S DR++PVD++VPGCPP EA+++G++L +K+ ++ Sbjct: 103 AIGSCPTGGSVFYESPFTNAPLDRVIPVDVFVPGCPPRPEAILHGVVLALEKLAKM 158 >gi|124485778|ref|YP_001030394.1| membrane bound hydrogenase subunit mbhJ [Methanocorpusculum labreanum Z] gi|124363319|gb|ABN07127.1| Membrane bound hydrogenase subunit mbhJ [Methanocorpusculum labreanum Z] Length = 143 Score = 117 bits (293), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 53/116 (45%), Positives = 76/116 (65%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E++ PRYD ERFG SPR +DV++V G +TN+MA LRRVY QM P+ V+ Sbjct: 24 CDIEIVATLTPRYDPERFGVKLVGSPRHADVLLVTGPVTNQMADRLRRVYAQMAGPKVVM 83 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 +G+C GG + SY++ D+I+PVD+YVPGC P EA+I G++ K+ R+ Sbjct: 84 VVGTCGQSGGVFSTSYNLAGPVDQIIPVDVYVPGCAPRPEAIINGVVTAIAKLERL 139 >gi|242280696|ref|YP_002992825.1| NADH dehydrogenase (quinone) [Desulfovibrio salexigens DSM 2638] gi|242123590|gb|ACS81286.1| NADH dehydrogenase (quinone) [Desulfovibrio salexigens DSM 2638] Length = 144 Score = 117 bits (293), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 48/114 (42%), Positives = 76/114 (66%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E++ P YD+ERFG +P+ +DV++V GT+ ++ A LR +YDQMP+P+ VI Sbjct: 27 CDIEVLACLTPLYDVERFGVVNVGNPKHADVLLVTGTVNHRNAKVLRNIYDQMPDPKGVI 86 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 ++G+C GG + Y+V+ G D+++PVD+YVPGCP EA+I G++ K Sbjct: 87 AIGACGLSGGVFRECYNVLGGVDKVIPVDVYVPGCPAKPEAIIDGVVAALAKFE 140 >gi|315231237|ref|YP_004071673.1| NADH-ubiquinone oxidoreductase subunit B [Thermococcus barophilus MP] gi|315184265|gb|ADT84450.1| NADH-ubiquinone oxidoreductase chain B [Thermococcus barophilus MP] Length = 148 Score = 117 bits (293), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 49/107 (45%), Positives = 72/107 (67%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E++ PRYD+ERFG SPR +DV++V G + A LRR+Y+QMP+P+ VI Sbjct: 24 CDIEIVALLTPRYDVERFGIKLAGSPRHADVLLVTGAIPRDFADKLRRIYEQMPDPKAVI 83 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171 +G+C GG ++ SY++ D I+PVD+YVPGCPP EA+I ++ Sbjct: 84 VVGNCGTSGGVFYDSYNIAGPIDEIIPVDVYVPGCPPRPEAIIDAVV 130 >gi|83591661|ref|YP_425413.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit [Rhodospirillum rubrum ATCC 11170] gi|83574575|gb|ABC21126.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit [Rhodospirillum rubrum ATCC 11170] Length = 173 Score = 117 bits (292), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 51/106 (48%), Positives = 72/106 (67%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E + A P YD ERFG SPR +DV++++G +T LRR+Y+Q P P+ VI Sbjct: 29 CDIEEVNAFTPYYDAERFGLKLVGSPRHADVLLISGPVTRTAEPRLRRLYEQTPNPKVVI 88 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGI 170 + GSCA GGG + SY V+ G D++VPVD Y+PGCPP EA+++G+ Sbjct: 89 ACGSCAVGGGMWFDSYHVLGGADKVVPVDFYIPGCPPRPEAILWGV 134 >gi|154175443|ref|YP_001407625.1| hypothetical protein CCV52592_1637 [Campylobacter curvus 525.92] gi|112802282|gb|EAT99626.1| HsdS [Campylobacter curvus 525.92] Length = 274 Score = 117 bits (292), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 54/145 (37%), Positives = 89/145 (61%), Gaps = 3/145 (2%) Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLAC--CAVEMMQASMPRYDLERFGFA 85 ++ +I L ++ L R+ S+ + G +C C +E+ A P +D ERFGF Sbjct: 5 QVPQDIKTANDLTAKLEHLKNIKRSFSVYRIDCG-SCNGCEIEIFAAITPMWDPERFGFK 63 Query: 86 PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRG 145 A+PR +D++I +G +T +M L R Y+ P+P+ V++ G+C + GG +H +YSV G Sbjct: 64 LVANPRHADILICSGPVTRQMYYPLLRAYEAAPDPKIVVAFGACGSSGGIFHDAYSVWGG 123 Query: 146 CDRIVPVDIYVPGCPPTAEALIYGI 170 D+I+PVD+Y+PGCPP ++IYG+ Sbjct: 124 IDKIIPVDVYIPGCPPHPASVIYGL 148 >gi|320101012|ref|YP_004176604.1| NADH-quinone oxidoreductase subunit B [Desulfurococcus mucosus DSM 2162] gi|319753364|gb|ADV65122.1| NADH-quinone oxidoreductase, B subunit [Desulfurococcus mucosus DSM 2162] Length = 161 Score = 117 bits (292), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 51/114 (44%), Positives = 78/114 (68%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E++ A P YD ERFG S R D+++V G +T K L+R+Y+QMP P++VI Sbjct: 35 CDIEVLAAITPLYDPERFGVRLAPSIRHGDILVVTGAVTKKSGERLKRLYEQMPCPKFVI 94 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 ++G+CA GG + SY+V+ G D++VPV +Y+PGCPP EA++ GI+ L K++ Sbjct: 95 AVGACACSGGVFSKSYTVLAGADKVVPVSMYIPGCPPRPEAILDGIVKLLKRVE 148 >gi|332701743|ref|ZP_08421831.1| NADH-quinone oxidoreductase, B subunit [Desulfovibrio africanus str. Walvis Bay] gi|332551892|gb|EGJ48936.1| NADH-quinone oxidoreductase, B subunit [Desulfovibrio africanus str. Walvis Bay] Length = 179 Score = 116 bits (291), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 48/112 (42%), Positives = 75/112 (66%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E + P YD+ERFG +P+ +DV++V GT+ + L+ +Y+QMP P+ V+ Sbjct: 29 CDIETLAVLTPLYDVERFGIINVGNPKHADVLLVTGTVNYRNQHVLKTIYEQMPHPKAVV 88 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKK 176 ++G+C GG + Y+VV G DR++PVD+YVPGCPP EA+I G++L +K Sbjct: 89 AIGACGLSGGVFRDCYNVVGGVDRVIPVDVYVPGCPPKPEAIIDGVVLGLEK 140 >gi|260575431|ref|ZP_05843430.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Rhodobacter sp. SW2] gi|259022351|gb|EEW25648.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Rhodobacter sp. SW2] Length = 177 Score = 116 bits (291), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 55/120 (45%), Positives = 76/120 (63%), Gaps = 3/120 (2%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E+ S P YDLERFG ASPR +DV++V G +T MA AL R Y PEP++V+ Sbjct: 58 CELEINALSNPYYDLERFGLHFVASPRHADVLLVTGPVTRNMAEALERTYAATPEPKWVV 117 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 + G CA GG + SY++V G ++PVD+++PGCPP AL+ G+L L I R G + Sbjct: 118 ACGDCARDGGCFAGSYAIVGGVAAVLPVDLHIPGCPPNPTALLQGLLAL---IERAGTAR 174 >gi|46578848|ref|YP_009656.1| ech hydrogenase subunit EchC [Desulfovibrio vulgaris str. Hildenborough] gi|120603546|ref|YP_967946.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Desulfovibrio vulgaris DP4] gi|46448260|gb|AAS94915.1| Ech hydrogenase, subunit EchC, putative [Desulfovibrio vulgaris str. Hildenborough] gi|120563775|gb|ABM29519.1| ech hydrogenase subunit C [Desulfovibrio vulgaris DP4] gi|311232712|gb|ADP85566.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfovibrio vulgaris RCH1] Length = 157 Score = 116 bits (291), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 45/107 (42%), Positives = 75/107 (70%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E++ P +D+ERFG +P+ +DV++V GT+ ++ L+ +YDQMP+P+ VI Sbjct: 29 CDIEVLACLTPVFDVERFGIINVGNPKHADVLLVTGTVNHRNKKVLKNIYDQMPDPKAVI 88 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171 ++G+C + GG + Y+VV G D+++PVD+YVPGCP EA+I G++ Sbjct: 89 AIGACGSSGGVFRECYNVVGGVDQVIPVDVYVPGCPAKPEAIIDGVV 135 >gi|182414281|ref|YP_001819347.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Opitutus terrae PB90-1] gi|177841495|gb|ACB75747.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Opitutus terrae PB90-1] Length = 279 Score = 116 bits (291), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 52/115 (45%), Positives = 75/115 (65%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C VE+ S P YDLERFG ASPR +D+++V G +T M ALR+ YD PEPR V+ Sbjct: 164 CEVEINALSGPIYDLERFGIHLVASPRHADMLLVTGPVTRNMELALRKTYDATPEPRLVV 223 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179 ++G+C GG + +Y+ D ++PVD+Y+PGCPP AL++GILL ++ + Sbjct: 224 AVGACGCSGGMFGRNYATCGSVDSVLPVDVYIPGCPPNPFALLHGILLAVGRLEK 278 >gi|34558135|ref|NP_907950.1| hydrogenase-Ni,Fe-hydrogenase III small subunit [Wolinella succinogenes DSM 1740] gi|34483853|emb|CAE10850.1| HYDROGENASE-Ni,Fe-hydrogenase III small subunit [Wolinella succinogenes] Length = 276 Score = 116 bits (291), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 48/120 (40%), Positives = 83/120 (69%), Gaps = 4/120 (3%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E+ A P +D ERFGF A+PR +D+++ G +T +M L R Y+ P+P+ V+ Sbjct: 43 CEIEIFAAITPLWDPERFGFKLVANPRHADILLCTGPVTRQMYYPLLRAYEAAPDPKLVV 102 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKKIRRV 180 ++G+C + GG ++ +YSV+ G D+I+PVD+Y+PGCPP ++IYG+ ++++K++RV Sbjct: 103 ALGACGSTGGIFYDAYSVLSGIDKIIPVDVYIPGCPPHPASIIYGLTTALGVMEQKLQRV 162 >gi|73669936|ref|YP_305951.1| ech hydrogenase subunit C [Methanosarcina barkeri str. Fusaro] gi|72397098|gb|AAZ71371.1| ech hydrogenase subunit C [Methanosarcina barkeri str. Fusaro] Length = 163 Score = 116 bits (290), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 52/124 (41%), Positives = 84/124 (67%), Gaps = 6/124 (4%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E++ P YD ERFG +P+Q+D+M+V G + K + L +Y+Q+P+P+ VI Sbjct: 20 CDIEVIACLTPLYDAERFGVLNIGTPKQADIMVVTGAVNYKNVNVLINIYNQIPDPKVVI 79 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKKIRRV 180 ++G+CA+ GG +H Y+V+ G D+++PVDIYVPGC P EA++ GI+ +L+ K +R Sbjct: 80 AVGACASTGGIFHSCYNVIGGVDQVIPVDIYVPGCCPRPEAILDGIIAALPILEDKKKR- 138 Query: 181 GNVK 184 N+K Sbjct: 139 -NIK 141 >gi|303327574|ref|ZP_07358015.1| carbon monoxide-induced hydrogenase, CooL subunit [Desulfovibrio sp. 3_1_syn3] gi|302862514|gb|EFL85447.1| carbon monoxide-induced hydrogenase, CooL subunit [Desulfovibrio sp. 3_1_syn3] Length = 187 Score = 116 bits (290), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 53/138 (38%), Positives = 86/138 (62%), Gaps = 7/138 (5%) Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCA---VEMMQASMPRYDLERFGFAPRASPRQS 93 GFL D ++ +R S + F C +E++ P YD+ERFG +P+ + Sbjct: 2 GFL----DAMIKRSRLKSPWIIHFDCGSCNGCDIEVLACLTPMYDVERFGVVNTGNPKHA 57 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD 153 DV++V GT+ ++ LR++YDQMPEP+ V+S+G+C GG + SY+++ G ++PVD Sbjct: 58 DVLLVTGTVNHRNRHVLRQIYDQMPEPKAVVSIGACNLSGGVFKDSYNILNGAYNVIPVD 117 Query: 154 IYVPGCPPTAEALIYGIL 171 ++VPGCPP EA+I G++ Sbjct: 118 VFVPGCPPKPEAIIDGVV 135 >gi|254168030|ref|ZP_04874878.1| NADH-quinone oxidoreductase, B subunit subfamily [Aciduliprofundum boonei T469] gi|254168134|ref|ZP_04874981.1| NADH-quinone oxidoreductase, B subunit subfamily [Aciduliprofundum boonei T469] gi|289596054|ref|YP_003482750.1| NADH-quinone oxidoreductase, B subunit [Aciduliprofundum boonei T469] gi|197622900|gb|EDY35468.1| NADH-quinone oxidoreductase, B subunit subfamily [Aciduliprofundum boonei T469] gi|197623073|gb|EDY35640.1| NADH-quinone oxidoreductase, B subunit subfamily [Aciduliprofundum boonei T469] gi|289533841|gb|ADD08188.1| NADH-quinone oxidoreductase, B subunit [Aciduliprofundum boonei T469] Length = 180 Score = 116 bits (290), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 55/123 (44%), Positives = 78/123 (63%), Gaps = 1/123 (0%) Query: 56 MWMT-FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVY 114 +WM F C A+EM RYD+ERFG P A+PRQ+D+M+V G + K + RVY Sbjct: 27 LWMIHFCTGCGAMEMPPVMTSRYDMERFGIIPMATPRQADLMLVTGYVATKTLKRIVRVY 86 Query: 115 DQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQ 174 +QM +P+YVI+ GSC GG Y SY++++ D+ +PVD+Y+ GC P EA++ L L Sbjct: 87 EQMQDPKYVIAFGSCPINGGIYWDSYNIIKRLDKYIPVDLYIAGCMPRPEAIMDAFLKLM 146 Query: 175 KKI 177 K I Sbjct: 147 KDI 149 >gi|332157667|ref|YP_004422946.1| NADH-ubiquinone oxidoreductase subunit [Pyrococcus sp. NA2] gi|331033130|gb|AEC50942.1| NADH-ubiquinone oxidoreductase subunit [Pyrococcus sp. NA2] Length = 172 Score = 115 bits (289), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 48/116 (41%), Positives = 78/116 (67%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E++ A PRYD ERFG SPR +D+++V G +TN+ ++ VY+Q P+P+ VI Sbjct: 46 CDIEIIAALTPRYDAERFGVKLVGSPRHADILLVTGPVTNQSLERVKLVYEQTPDPKIVI 105 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 ++GSC GG ++ S D ++PVD++VPGCPP EA++YG++L +K+ ++ Sbjct: 106 AVGSCPTGGSVFYESPFTNAPLDNVIPVDVFVPGCPPRPEAILYGVVLALEKLAKI 161 >gi|119719977|ref|YP_920472.1| NADH-quinone oxidoreductase, B subunit [Thermofilum pendens Hrk 5] gi|119525097|gb|ABL78469.1| NADH-quinone oxidoreductase, B subunit [Thermofilum pendens Hrk 5] Length = 142 Score = 115 bits (289), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 48/106 (45%), Positives = 73/106 (68%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E + A PR+DLER G SPR +DV++V G +T A AL+ +YDQ+PEPR V+ Sbjct: 25 CDIEFVAALTPRFDLERLGVQLVPSPRHADVLVVTGPVTRASADALKTIYDQVPEPRIVV 84 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGI 170 + G+CA GG + Y+V+ G D+++PVD+ +PGCPP E+L++ + Sbjct: 85 AFGTCACSGGVFSNCYNVLGGADKVLPVDVKIPGCPPKPESLLHAL 130 >gi|67968299|dbj|BAE00199.1| NADH dehydrogenase subunit K [Selaginella uncinata] Length = 215 Score = 115 bits (289), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 57/147 (38%), Positives = 82/147 (55%), Gaps = 1/147 (0%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93 T + T+ + AR S +G +CC E R D +R G PR+SPRQ+ Sbjct: 38 TPDSIIPTTPNDFTNRARLPSSRPPPYGTSCCFTEFAPLIGSRSDSDRHGSVPRSSPRQA 97 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS-YSVVRGCDRIVPV 152 D++I AGT T KMA +L R Y+Q PEP++ I+MG+C GG +S VRG D+ +P Sbjct: 98 DLIITAGTATTKMAPSLVRSYEQTPEPKHAIAMGACTVTGGMLSTDPHSTVRGVDKSIPA 157 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179 D Y PG PP EA++ + ++K+ R Sbjct: 158 DTYPPGRPPKPEAIVDATIKPREKVSR 184 >gi|18977804|ref|NP_579161.1| mbh10 NADH dehydrogenase subunit [Pyrococcus furiosus DSM 3638] gi|18893553|gb|AAL81556.1| mbh10 NADH dehydrogenase subunit (like cCoL, EchC, HycH) [Pyrococcus furiosus DSM 3638] Length = 167 Score = 115 bits (289), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 48/116 (41%), Positives = 79/116 (68%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E++ A PRYD ERFG SPR +D+++V G +TN+ ++ VY+Q P+P+ VI Sbjct: 38 CDIEIIAALTPRYDAERFGVKLVGSPRHADILLVTGPVTNQSLERVKLVYEQTPDPKIVI 97 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 ++G+C GG ++ S DRI+PVD++VPGCPP EA+++G++L +K+ ++ Sbjct: 98 AIGACPTGGSVFYESPFTNAPLDRIIPVDVFVPGCPPRPEAILHGVVLALEKLAKM 153 >gi|157164480|ref|YP_001466173.1| hydrogenase-4 component I [Campylobacter concisus 13826] gi|112801502|gb|EAT98846.1| hydrogenase-4 component I [Campylobacter concisus 13826] Length = 274 Score = 115 bits (288), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 53/145 (36%), Positives = 89/145 (61%), Gaps = 3/145 (2%) Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLAC--CAVEMMQASMPRYDLERFGFA 85 ++ +I L ++ L R+ S+ + G +C C +E+ A P +D ERFGF Sbjct: 5 QVPEDIKTANDLTAKLEHLKNIKRSFSVYRIDCG-SCNGCEIEIFAAITPMWDPERFGFK 63 Query: 86 PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRG 145 A+PR +D+++ +G +T +M L R Y+ P+P+ V++ G+C + GG +H +YSV G Sbjct: 64 LVANPRHADILLCSGPVTRQMYYPLLRAYEAAPDPKIVVAFGACGSTGGIFHDAYSVWGG 123 Query: 146 CDRIVPVDIYVPGCPPTAEALIYGI 170 D+I+PVD+Y+PGCPP ++IYG+ Sbjct: 124 IDKIIPVDVYIPGCPPHPASVIYGL 148 >gi|83309305|ref|YP_419569.1| Ni,Fe-hydrogenase III small subunit [Magnetospirillum magneticum AMB-1] gi|82944146|dbj|BAE49010.1| Ni,Fe-hydrogenase III small subunit [Magnetospirillum magneticum AMB-1] Length = 178 Score = 115 bits (288), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 50/113 (44%), Positives = 74/113 (65%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E+ + P YDLERFG ASPR +DV++V G +T M ALRR + PEPR+++ Sbjct: 63 CELEIHAVNHPIYDLERFGIRFVASPRHADVLLVTGPVTRNMEEALRRTVEATPEPRWIV 122 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 +MG C GG + SY+VV G +VPVD+++PGCPP+ ++ G+L L + + Sbjct: 123 AMGDCGKDGGCFAGSYAVVGGVSDVVPVDLHIPGCPPSPRQILAGLLALLETV 175 >gi|118474722|ref|YP_891335.1| hydrogenase-Ni,Fe-hydrogenase III small subunit [Campylobacter fetus subsp. fetus 82-40] gi|118413948|gb|ABK82368.1| hydrogenase-ni,fe-hydrogenase III small subunit [Campylobacter fetus subsp. fetus 82-40] Length = 271 Score = 115 bits (288), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 56/157 (35%), Positives = 94/157 (59%), Gaps = 7/157 (4%) Query: 29 ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLAC--CAVEMMQASMPRYDLERFGFAP 86 + +I L + ++ L R+ S+ + G +C C +E+ A P +D ERFGF Sbjct: 4 VPDDIQRSNDLNSKLNLLKNIKRSFSVFRIDCG-SCNGCEIEIFAALSPLWDPERFGFKL 62 Query: 87 RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGC 146 A+PR +D++IV+G +T +M L R Y+ P+P+ V+ G+C GG +H SY+V G Sbjct: 63 VANPRHADILIVSGPITRQMYYPLLRAYEATPDPKIVVGFGACGVSGGIFHDSYAVWGGA 122 Query: 147 DRIVPVDIYVPGCPPTAEALIYGIL----LLQKKIRR 179 D+I+PVD++VPGCPP ++IY + L+++K+ + Sbjct: 123 DKILPVDVFVPGCPPHPASIIYALATAVGLIEQKLEK 159 >gi|319789460|ref|YP_004151093.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Thermovibrio ammonificans HB-1] gi|317113962|gb|ADU96452.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Thermovibrio ammonificans HB-1] Length = 177 Score = 115 bits (288), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 50/117 (42%), Positives = 77/117 (65%) Query: 55 LMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVY 114 L + T C +E++ P+YDLERFG R +P+QSDV+IV G +T + L R+Y Sbjct: 14 LHYNTGSCNGCDIEILACLAPKYDLERFGILNRGNPKQSDVLIVTGPVTKRAKERLLRLY 73 Query: 115 DQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171 +MPEP+ V+++G+CA GG + + Y+V G D ++PVD+YVPGC E++I G++ Sbjct: 74 YEMPEPKVVVAVGACACTGGVFRHMYNVENGVDSVIPVDVYVPGCAARPESIIDGVI 130 >gi|288575153|ref|ZP_06393510.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Dethiosulfovibrio peptidovorans DSM 11002] gi|288570894|gb|EFC92451.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Dethiosulfovibrio peptidovorans DSM 11002] Length = 151 Score = 115 bits (287), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 55/124 (44%), Positives = 80/124 (64%), Gaps = 7/124 (5%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E++ PRYD+ERFG +PR +DV++V G +T M L R+Y Q+P+P+ VI Sbjct: 27 CDIEIVSTVSPRYDIERFGMKLTGTPRHADVLLVTGPVTRFMKEKLERIYAQIPDPKVVI 86 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYG----ILLLQKK---I 177 ++G+CA G Y SY++V DRI+PVD+YV GCPP EA+I G +L L+ K + Sbjct: 87 AVGNCACSGDVYFKSYNLVGPVDRIIPVDVYVHGCPPRPEAIIEGAAKAVLKLEAKRAEL 146 Query: 178 RRVG 181 R+ G Sbjct: 147 RKAG 150 >gi|52549748|gb|AAU83597.1| F420H2-quinone oxidoreductase 45 kD subunit [uncultured archaeon GZfos32E4] Length = 788 Score = 115 bits (287), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 61/150 (40%), Positives = 86/150 (57%), Gaps = 5/150 (3%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 I H G L WA SL F +CC VE+ YD+ER G RQ Sbjct: 12 ILHSGVFTP----LRRWATKWSLWPCHFLTSCCGVELAHTGACGYDMERLGTLNMGISRQ 67 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 ++ ++V GT+T KMA ALR V++QMP+P++V +G+C GG + SY++ R D IVPV Sbjct: 68 ANFIMVEGTITRKMARALRIVWEQMPDPKFVNVIGTCGQRGGIFWNSYNITRPSD-IVPV 126 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGN 182 D ++PGCP T E+L+ G+ +Q+KI N Sbjct: 127 DFFIPGCPITPESLLRGVRAVQEKIEGRDN 156 >gi|52548540|gb|AAU82389.1| F420H2-quinone oxidoreductase 45 kD subunit [uncultured archaeon GZfos17C7] Length = 788 Score = 115 bits (287), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 61/150 (40%), Positives = 86/150 (57%), Gaps = 5/150 (3%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 I H G L WA SL F +CC VE+ YD+ER G RQ Sbjct: 12 ILHSGVFTP----LRRWATKWSLWPCHFLTSCCGVELAHTGACGYDMERLGTLNMGISRQ 67 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 ++ ++V GT+T KMA ALR V++QMP+P++V +G+C GG + SY++ R D IVPV Sbjct: 68 ANFIMVEGTITRKMARALRIVWEQMPDPKFVNVIGTCGQRGGIFWNSYNITRPSD-IVPV 126 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGN 182 D ++PGCP T E+L+ G+ +Q+KI N Sbjct: 127 DFFIPGCPITPESLLRGVRAVQEKIEGRDN 156 >gi|218886615|ref|YP_002435936.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|193479935|gb|ACF17988.1| EchC [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218757569|gb|ACL08468.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 157 Score = 115 bits (287), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 44/107 (41%), Positives = 74/107 (69%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E++ P +D+ERFG +P+ +DV++V GT+ ++ L+ +YDQMP+P+ VI Sbjct: 29 CDIEVLACLTPVFDVERFGIINVGNPKHADVLLVTGTVNHRNKKVLKNIYDQMPDPKAVI 88 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171 ++G+C GG + Y+VV G D+++PVD+YVPGCP +A+I G++ Sbjct: 89 AIGACGTSGGVFRECYNVVGGVDQVIPVDVYVPGCPAKPDAIIDGVV 135 >gi|302872081|ref|YP_003840717.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Caldicellulosiruptor obsidiansis OB47] gi|312127862|ref|YP_003992736.1| NADH ubiquinone oxidoreductase 20 kda subunit [Caldicellulosiruptor hydrothermalis 108] gi|302574940|gb|ADL42731.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Caldicellulosiruptor obsidiansis OB47] gi|311777881|gb|ADQ07367.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Caldicellulosiruptor hydrothermalis 108] Length = 154 Score = 115 bits (287), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 48/120 (40%), Positives = 81/120 (67%), Gaps = 4/120 (3%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E++ P YD+ERFG +P+ +D+++V+G++ ++ A L+ +YDQMP P+ V+ Sbjct: 24 CDIEILATLTPVYDVERFGIINVGNPKHADILVVSGSVNHRNARVLKTIYDQMPHPKAVV 83 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKKIRRV 180 ++G+CA GG + Y+ + G D +VPVD+YVPGC P EA++ GIL LL++K + + Sbjct: 84 AIGACACSGGIFKECYNTLGGADTVVPVDVYVPGCAPRPEAIMEGILKAAQLLEEKKKNM 143 >gi|268680487|ref|YP_003304918.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Sulfurospirillum deleyianum DSM 6946] gi|268618518|gb|ACZ12883.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Sulfurospirillum deleyianum DSM 6946] Length = 274 Score = 115 bits (287), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 54/159 (33%), Positives = 98/159 (61%), Gaps = 7/159 (4%) Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLAC--CAVEMMQASMPRYDLERFGFA 85 + S+I L ++ L R+ S+ + G +C C +E+ A P +D ERFGF Sbjct: 5 EVPSDIALANSLEEKLELLKHIGRSFSVFRIDCG-SCNGCEIEIFAAITPLWDPERFGFK 63 Query: 86 PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRG 145 A+PR +D+++ G +T +M L R Y+ P+P+ V+++G+C GG ++ +YSV+ G Sbjct: 64 LVANPRHADILLCTGPVTRQMYYPLLRAYEATPDPKIVVALGACGATGGIFYDAYSVLSG 123 Query: 146 CDRIVPVDIYVPGCPPTAEALIYGIL----LLQKKIRRV 180 D+I+PVD+Y+PGCPP ++IYG+ ++++++++V Sbjct: 124 IDKIIPVDVYIPGCPPHPASIIYGLTTALGVMEQRLQKV 162 >gi|269104123|ref|ZP_06156819.1| formate hydrogenlyase subunit 7 [Photobacterium damselae subsp. damselae CIP 102761] gi|268160763|gb|EEZ39260.1| formate hydrogenlyase subunit 7 [Photobacterium damselae subsp. damselae CIP 102761] Length = 287 Score = 115 bits (287), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 53/122 (43%), Positives = 74/122 (60%), Gaps = 4/122 (3%) Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 G C +E+ A+ P +D ERFG ASPR +D+++ G +T M + R Y+ P+P Sbjct: 48 GCNACEIEIFAATTPVFDAERFGIKVVASPRHADILLFTGAVTRAMRAPALRAYEAAPDP 107 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176 + VIS G+C GG +H Y V G D+IVPVD+Y+PGCPPT A IYG LL +K Sbjct: 108 KIVISYGACGCDGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATIYGFAVALGLLDQK 167 Query: 177 IR 178 ++ Sbjct: 168 LK 169 >gi|254173172|ref|ZP_04879845.1| hydrogenase-4 component I [Thermococcus sp. AM4] gi|214032581|gb|EEB73410.1| hydrogenase-4 component I [Thermococcus sp. AM4] Length = 173 Score = 115 bits (287), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 48/116 (41%), Positives = 77/116 (66%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E++ A PRYD ERFG SPR +D+++V G +TN+ ++ VY+Q PEP+ VI Sbjct: 46 CDIEIIAALTPRYDAERFGVKLVGSPRHADILLVTGPVTNQSLERVKLVYEQTPEPKIVI 105 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 ++GSC GG ++ S ++PVD+YVPGCPP EA+++G++L +K+ ++ Sbjct: 106 AVGSCPTGGSVFYESPFTNAPLSNVIPVDVYVPGCPPRPEAILHGVVLALEKLAKI 161 >gi|220904936|ref|YP_002480248.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219869235|gb|ACL49570.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 185 Score = 114 bits (286), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 49/132 (37%), Positives = 84/132 (63%), Gaps = 3/132 (2%) Query: 43 VDQLVTWARTGSLMWMTFGLACCA---VEMMQASMPRYDLERFGFAPRASPRQSDVMIVA 99 VD+++ +R S + F C +E++ P YD+ERFG +P+ +DV++V Sbjct: 4 VDKMIKRSRLKSPWIVHFDCGSCNGCDIEVLACLTPMYDVERFGVVNAGNPKHADVLLVT 63 Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGC 159 GT+ ++ L+++Y+QMP P+ VIS+G+C GG + +Y+V+ G ++PVD++VPGC Sbjct: 64 GTVNHRNRHVLKQIYEQMPSPKAVISLGACNLSGGVFKDTYNVLNGAHNVIPVDVFVPGC 123 Query: 160 PPTAEALIYGIL 171 PP EA+I G++ Sbjct: 124 PPKPEAIIDGVV 135 >gi|89074820|ref|ZP_01161274.1| hydrogenase-4 component I [Photobacterium sp. SKA34] gi|89049395|gb|EAR54957.1| hydrogenase-4 component I [Photobacterium sp. SKA34] Length = 277 Score = 114 bits (286), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 53/122 (43%), Positives = 75/122 (61%), Gaps = 4/122 (3%) Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 G C +E+ A+ P +D ERFG ASPR +D+++ G++T M + R Y+ P+P Sbjct: 48 GCNACEIEIFAATTPVFDTERFGIKIVASPRHADILLYTGSVTRAMRAPALRAYEAAPDP 107 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176 + VIS G+C GG +H Y V G D+IVPVD+Y+PGCPPT A IYG LL +K Sbjct: 108 KIVISYGACGCDGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATIYGFAVALGLLDQK 167 Query: 177 IR 178 ++ Sbjct: 168 LK 169 >gi|221041900|dbj|BAH12627.1| unnamed protein product [Homo sapiens] Length = 148 Score = 114 bits (286), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 64/112 (57%), Positives = 79/112 (70%), Gaps = 8/112 (7%) Query: 6 VNQKI-ISGQSSC--SLEKVDADFSRISSEITHKG-FLVTSVDQLVTWARTGSLMWMTFG 61 V+Q + I G SS +L K A ++ + + +G ++V +D LV WAR SL MTFG Sbjct: 30 VHQSVAIDGPSSTQPALPKARA----VAPKPSSRGEYVVAKLDDLVNWARRSSLWPMTFG 85 Query: 62 LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRV 113 LACCAVEMM + PRYD++RFG RASPRQSDVMIVAGTLTNKMA ALR+V Sbjct: 86 LACCAVEMMHMAAPRYDMDRFGVVFRASPRQSDVMIVAGTLTNKMAPALRKV 137 >gi|88603826|ref|YP_504004.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Methanospirillum hungatei JF-1] gi|88189288|gb|ABD42285.1| Membrane bound hydrogenase subunit mbhJ [Methanospirillum hungatei JF-1] Length = 145 Score = 114 bits (286), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 50/116 (43%), Positives = 79/116 (68%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E++ A PRYD ERFG SPR +DV++V G +T++M ++RVY+QM P+ V+ Sbjct: 24 CDIEIVAALCPRYDPERFGIKLVGSPRHADVLLVTGPVTHQMRDRVKRVYEQMAAPKVVM 83 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 +G+C GG ++ SY++ D+++PVD+YVPGC P EA+IYG++ K+ R+ Sbjct: 84 CVGTCGQSGGVFYDSYNLDGPIDQVIPVDVYVPGCAPRPEAIIYGVVQAIAKLERL 139 >gi|90578223|ref|ZP_01234034.1| hydrogenase-4 component I [Vibrio angustum S14] gi|90441309|gb|EAS66489.1| hydrogenase-4 component I [Vibrio angustum S14] Length = 277 Score = 114 bits (286), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 56/141 (39%), Positives = 81/141 (57%), Gaps = 6/141 (4%) Query: 44 DQLVTWARTGSLMWMTF--GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGT 101 D L+ R + ++ G C +E+ A+ P +D ERFG ASPR +D+++ G Sbjct: 29 DALIKQIRRSAYVYRVDCGGCNACEIEIFAATTPVFDTERFGIKVVASPRHADILLFTGA 88 Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP 161 +T M + R Y+ P+P+ VIS G+C GG +H Y V G D+IVPVD+Y+PGCPP Sbjct: 89 VTRAMRAPALRAYEAAPDPKIVISYGACGCDGGIFHDLYCVWGGTDKIVPVDVYIPGCPP 148 Query: 162 TAEALIYGIL----LLQKKIR 178 T A IYG LL +K++ Sbjct: 149 TPAATIYGFAVALGLLDQKLK 169 >gi|170289385|ref|YP_001739623.1| NADH-quinone oxidoreductase, B subunit [Thermotoga sp. RQ2] gi|170176888|gb|ACB09940.1| NADH-quinone oxidoreductase, B subunit [Thermotoga sp. RQ2] Length = 178 Score = 114 bits (286), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 52/129 (40%), Positives = 79/129 (61%) Query: 51 RTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASAL 110 R+ S+ + + C AVE+ + R+D+ERFG AP A+PRQ+D++++ G L K + Sbjct: 15 RSRSIWMLHYCTGCGAVELPPSMTSRFDMERFGIAPMATPRQADILLITGYLNTKTLRRV 74 Query: 111 RRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGI 170 Y+QMP+P+YV+ GSC GG Y SY+ V D +PVD+Y+ GC P EA++ Sbjct: 75 IYTYEQMPDPKYVVGFGSCTINGGIYFDSYATVNRLDYYIPVDVYIAGCMPRPEAILEAF 134 Query: 171 LLLQKKIRR 179 L +KIR+ Sbjct: 135 NYLMEKIRK 143 >gi|224538211|ref|ZP_03678750.1| hypothetical protein BACCELL_03102 [Bacteroides cellulosilyticus DSM 14838] gi|224520179|gb|EEF89284.1| hypothetical protein BACCELL_03102 [Bacteroides cellulosilyticus DSM 14838] Length = 104 Score = 114 bits (286), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 47/85 (55%), Positives = 68/85 (80%) Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD 153 D+++V GT+TNKMA L+R+YDQMP+P+YV+++G CA GG + SY VV G D+I+PVD Sbjct: 1 DMIMVCGTITNKMAPVLKRLYDQMPDPKYVVAVGGCAVSGGPFKKSYHVVNGVDKILPVD 60 Query: 154 IYVPGCPPTAEALIYGILLLQKKIR 178 +Y+PGCPP EA YG++ LQ+K++ Sbjct: 61 VYIPGCPPRPEAFYYGMMQLQRKVK 85 >gi|118579032|ref|YP_900282.1| NADH-quinone oxidoreductase subunit B [Pelobacter propionicus DSM 2379] gi|118501742|gb|ABK98224.1| ech hydrogenase subunit C [Pelobacter propionicus DSM 2379] Length = 164 Score = 114 bits (286), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 51/140 (36%), Positives = 87/140 (62%), Gaps = 3/140 (2%) Query: 43 VDQLVTWARTGS---LMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVA 99 +D++V WAR S + + T C +E++ P +D+ERFG + +PR +DV++ + Sbjct: 4 IDRIVNWARIKSPWVIHYNTGACNGCDIEIVATLTPVFDIERFGCQLKGTPRHADVLLCS 63 Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGC 159 G +T + + R+Y+QMPEP++V+++GSCA GG + Y+++ G D ++PV YVPGC Sbjct: 64 GPVTRQSRDRIIRIYEQMPEPKFVVAVGSCACSGGVFQGCYNILGGIDSVIPVSAYVPGC 123 Query: 160 PPTAEALIYGILLLQKKIRR 179 EA+I G++ L + R Sbjct: 124 AARPEAIIDGVVKLLTTLER 143 >gi|15643970|ref|NP_229019.1| NADH dehydrogenase subunit B [Thermotoga maritima MSB8] gi|4981767|gb|AAD36289.1|AE001778_10 NADH dehydrogenase, putative [Thermotoga maritima MSB8] Length = 178 Score = 114 bits (285), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 52/129 (40%), Positives = 79/129 (61%) Query: 51 RTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASAL 110 R+ S+ + + C AVE+ + R+D+ERFG AP A+PRQ+D++++ G L K + Sbjct: 15 RSRSIWMLHYCTGCGAVELPPSMTSRFDMERFGIAPMATPRQADILLITGYLNTKTLRRV 74 Query: 111 RRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGI 170 Y+QMP+P+YV+ GSC GG Y SY+ V D +PVD+Y+ GC P EA++ Sbjct: 75 IYTYEQMPDPKYVVGFGSCTINGGIYFDSYATVNRLDYYIPVDVYIAGCMPRPEAILEAF 134 Query: 171 LLLQKKIRR 179 L +KIR+ Sbjct: 135 NYLMEKIRK 143 >gi|317486369|ref|ZP_07945197.1| NADH ubiquinone oxidoreductase [Bilophila wadsworthia 3_1_6] gi|316922358|gb|EFV43616.1| NADH ubiquinone oxidoreductase [Bilophila wadsworthia 3_1_6] Length = 163 Score = 114 bits (285), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 47/114 (41%), Positives = 75/114 (65%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E++ P +D+ERFG P+ +DV++V GT+ + L+ +YDQMPEP+ VI Sbjct: 35 CDIEVLACLTPVFDVERFGIVNIGDPKHADVLLVTGTVNQRNKDVLKNLYDQMPEPKAVI 94 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 ++G+CA GG + Y+VV G D ++PVD+YVPGC EA+I G++L + ++ Sbjct: 95 AIGACACTGGVFQDCYNVVGGVDHVIPVDVYVPGCAAKPEAIIDGVVLALEVVK 148 >gi|330448643|ref|ZP_08312291.1| hydrogenase 3 and formate hydrogenlyase complex, HycG subunit [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328492834|dbj|GAA06788.1| hydrogenase 3 and formate hydrogenlyase complex, HycG subunit [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 277 Score = 114 bits (285), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 56/141 (39%), Positives = 81/141 (57%), Gaps = 6/141 (4%) Query: 44 DQLVTWARTGSLMWMTF--GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGT 101 D L+ R + ++ G C +E+ A+ P +D ERFG ASPR +D+++ G Sbjct: 29 DALIKQIRRSAYVYRVDCGGCNACEIEIFAATTPVFDAERFGIKVVASPRHADILLFTGA 88 Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP 161 +T M + R Y+ P+P+ VIS G+C GG +H Y V G D+IVPVD+Y+PGCPP Sbjct: 89 VTRAMRAPALRAYEAAPDPKIVISYGACGCDGGIFHDLYCVWGGTDKIVPVDVYIPGCPP 148 Query: 162 TAEALIYGIL----LLQKKIR 178 T A IYG LL +K++ Sbjct: 149 TPAATIYGFAVALGLLDQKLK 169 >gi|222100331|ref|YP_002534899.1| NADH dehydrogenase [Thermotoga neapolitana DSM 4359] gi|221572721|gb|ACM23533.1| NADH dehydrogenase [Thermotoga neapolitana DSM 4359] Length = 178 Score = 114 bits (285), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 52/129 (40%), Positives = 79/129 (61%) Query: 51 RTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASAL 110 R+ S+ + + C AVE+ + R+D+ERFG AP A+PRQ+D++++ G L K + Sbjct: 15 RSRSIWMLHYCTGCGAVELPPSMTSRFDMERFGIAPMATPRQADILLITGYLNTKTLRRV 74 Query: 111 RRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGI 170 Y+QMP+P+YV+ GSC GG Y SY+ V D +PVD+Y+ GC P EA++ Sbjct: 75 IYTYEQMPDPKYVVGFGSCTINGGIYFDSYATVNRLDYYIPVDVYIAGCMPRPEAILEAF 134 Query: 171 LLLQKKIRR 179 L +KIR+ Sbjct: 135 NYLMEKIRK 143 >gi|146296549|ref|YP_001180320.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145410125|gb|ABP67129.1| ech hydrogenase subunit C [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 154 Score = 114 bits (285), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 46/120 (38%), Positives = 81/120 (67%), Gaps = 4/120 (3%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E++ P YD+ERFG +P+ +D+++V+G++ ++ A L+ +YDQMP P+ V+ Sbjct: 24 CDIEILSTLTPVYDVERFGIINVGNPKHADILVVSGSVNHRNARVLKNIYDQMPHPKAVV 83 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKKIRRV 180 ++G+CA GG + Y+ + G D ++PVD+YVPGC P EA++ GIL +L++K + + Sbjct: 84 AIGACACSGGIFKECYNTLGGADTVIPVDVYVPGCAPRPEAIMEGILKAAEILEEKKKNM 143 >gi|169831261|ref|YP_001717243.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Candidatus Desulforudis audaxviator MP104C] gi|169638105|gb|ACA59611.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Candidatus Desulforudis audaxviator MP104C] Length = 141 Score = 114 bits (285), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 46/116 (39%), Positives = 77/116 (66%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E++ P YD+ERFG +P+ +D+++V G + + L+ +YDQMPEP+ V+ Sbjct: 25 CDIEILACLTPYYDVERFGILNIGNPKHADLLVVTGPANMRCSRVLKNLYDQMPEPKLVM 84 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 ++G+CA GG +H Y+++ G DR++PVD+YVPGC EA+I G++L K+ + Sbjct: 85 AVGACAATGGVFHNCYNILGGIDRVIPVDVYVPGCAARPEAIIDGVVLALDKLSNI 140 >gi|312793271|ref|YP_004026194.1| NADH ubiquinone oxidoreductase 20 kda subunit [Caldicellulosiruptor kristjanssonii 177R1B] gi|312180411|gb|ADQ40581.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Caldicellulosiruptor kristjanssonii 177R1B] Length = 154 Score = 114 bits (285), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 47/120 (39%), Positives = 81/120 (67%), Gaps = 4/120 (3%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E++ P YD+ERFG +P+ +D+++V+G++ ++ A L+ +Y+QMP P+ V+ Sbjct: 24 CDIEILATLTPVYDVERFGIINVGNPKHADILVVSGSVNHRNARVLKTIYEQMPHPKAVV 83 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKKIRRV 180 ++G+CA GG + Y+ + G D +VPVD+YVPGC P EA++ GIL LL++K + + Sbjct: 84 AIGACACSGGIFKECYNTLGGADTVVPVDVYVPGCAPRPEAIMEGILKAAQLLEEKKKNI 143 >gi|282163150|ref|YP_003355535.1| Ech hydrogenase subunit C [Methanocella paludicola SANAE] gi|282155464|dbj|BAI60552.1| Ech hydrogenase subunit C [Methanocella paludicola SANAE] Length = 156 Score = 114 bits (284), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 54/126 (42%), Positives = 80/126 (63%), Gaps = 4/126 (3%) Query: 59 TFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMP 118 T G C +E++ PRYD+ RFG +P+ +DVM+V G +T K ++ +YDQMP Sbjct: 19 TGGCNGCDLEILACLTPRYDVSRFGVMSTGNPKHADVMLVVGPVTIKYKEIIKNLYDQMP 78 Query: 119 EPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILL----LQ 174 +P+ VIS+G+CA+ GG Y Y G D++VPVD+YVPGC EA+I G++L L Sbjct: 79 DPKVVISVGTCASTGGIYQGCYGHCGGVDKVVPVDVYVPGCNVRPEAVIDGLVLALDILN 138 Query: 175 KKIRRV 180 +K R++ Sbjct: 139 EKERKI 144 >gi|126460561|ref|YP_001056839.1| NADH-quinone oxidoreductase, B subunit [Pyrobaculum calidifontis JCM 11548] gi|126250282|gb|ABO09373.1| NADH-quinone oxidoreductase, B subunit [Pyrobaculum calidifontis JCM 11548] Length = 192 Score = 114 bits (284), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 60/137 (43%), Positives = 88/137 (64%), Gaps = 1/137 (0%) Query: 42 SVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGT 101 ++ L W SL + +CC VE+ S P +D ER+G P + RQS+V++V GT Sbjct: 16 KLEPLFKWGVRWSLWPVHLVTSCCGVEVAHTSAPGFDAERWGVLPFHTMRQSNVILVEGT 75 Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP 161 +T KMA L++VY+QMPEP++VI+MG+CA GG + SY VV+ + VD+Y+ GCPP Sbjct: 76 VTKKMAKVLKQVYEQMPEPKFVIAMGACAVRGGLFWNSYHVVQVDTVVP-VDVYIAGCPP 134 Query: 162 TAEALIYGILLLQKKIR 178 T EA+I ++L KI+ Sbjct: 135 TPEAVIRAFIMLHNKIK 151 >gi|296272277|ref|YP_003654908.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Arcobacter nitrofigilis DSM 7299] gi|296096452|gb|ADG92402.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Arcobacter nitrofigilis DSM 7299] Length = 271 Score = 114 bits (284), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 51/144 (35%), Positives = 88/144 (61%), Gaps = 3/144 (2%) Query: 29 ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLAC--CAVEMMQASMPRYDLERFGFAP 86 + EI + L ++ L R+ ++ + G +C C +E+ A P +D ER GF Sbjct: 7 VPEEIENSNTLEAKLEHLKNIKRSFNVYRVDCG-SCNGCEIEVFAAITPMWDPERLGFKL 65 Query: 87 RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGC 146 ASPR +D+++ +G +T +M L R Y+ P+P+ V+++G+C + GG +H +YSV G Sbjct: 66 VASPRHADILLCSGPVTRQMYYPLLRAYEATPDPKVVVAIGACGSSGGIFHDAYSVWGGI 125 Query: 147 DRIVPVDIYVPGCPPTAEALIYGI 170 D+++PVD+Y+PGCPP +I+G+ Sbjct: 126 DKVIPVDVYIPGCPPHPATIIHGL 149 >gi|240102096|ref|YP_002958404.1| membrane bound hydrogenase, MbhJ subunit (MbhJ) [Thermococcus gammatolerans EJ3] gi|239909649|gb|ACS32540.1| membrane bound hydrogenase, MbhJ subunit (MbhJ) [Thermococcus gammatolerans EJ3] Length = 174 Score = 113 bits (283), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 46/116 (39%), Positives = 78/116 (67%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E++ PRYD ERFG SPR +D+++V G +TN+ ++ VY+Q P+P+ V+ Sbjct: 47 CDIEIIAILTPRYDAERFGVKLVGSPRHADILLVTGPVTNQSLERVKLVYEQTPDPKIVV 106 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 ++G+CA GGG ++ S ++PVD+YVPGCPP EA+++G++L +K+ ++ Sbjct: 107 AVGACATGGGVFYESPFTNAPLSNVIPVDVYVPGCPPRPEAILHGVVLALEKLAKI 162 >gi|297526163|ref|YP_003668187.1| NADH-quinone oxidoreductase, B subunit [Staphylothermus hellenicus DSM 12710] gi|297255079|gb|ADI31288.1| NADH-quinone oxidoreductase, B subunit [Staphylothermus hellenicus DSM 12710] Length = 179 Score = 113 bits (283), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 56/132 (42%), Positives = 78/132 (59%) Query: 46 LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNK 105 W R+ S+ + + AC A+E+ + D ER+G SPRQ+DV++V G +T K Sbjct: 11 FAEWVRSRSIWMIHYCTACGAIELPPNIVAPLDAERWGIMAAPSPRQADVLVVMGYVTKK 70 Query: 106 MASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEA 165 L R+Y QMPEPRYV+ +C GG Y SYS ++ D +PVD++VPGC P AE Sbjct: 71 TLKILMRLYHQMPEPRYVMVGCNCPATGGLYWDSYSTIKAVDEFLPVDVWVPGCMPRAED 130 Query: 166 LIYGILLLQKKI 177 + G L L+KKI Sbjct: 131 WLQGFLRLRKKI 142 >gi|315180292|gb|ADT87206.1| hydrogenase-4 component I [Vibrio furnissii NCTC 11218] Length = 272 Score = 113 bits (283), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 52/122 (42%), Positives = 74/122 (60%), Gaps = 4/122 (3%) Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 G C +E+ A+ P YD ERFG ASPR +D+++ G +T M + R Y+ P+P Sbjct: 48 GCNACEIEIFAATTPVYDTERFGIKVVASPRHADILLFTGAVTRAMRAPALRAYEAAPDP 107 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176 + V+S G+C GG +H Y V G D+IVPVD+Y+PGCPPT A +YG LL++K Sbjct: 108 KIVVSYGACGCDGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAVALGLLEQK 167 Query: 177 IR 178 + Sbjct: 168 MH 169 >gi|91202885|emb|CAJ72524.1| strongly similar to membrane-bound [NiFe]-hydrogenase-3, small subunit (chain G) [Candidatus Kuenenia stuttgartiensis] Length = 262 Score = 113 bits (283), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 49/115 (42%), Positives = 76/115 (66%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C E++ P +DL+RFG ASPR +D ++V G T + +AL + Y PEP+ VI Sbjct: 148 CEWEVVALLNPVHDLQRFGIDIVASPRHADCLLVTGPPTRNLETALIKGYHATPEPKMVI 207 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179 ++G+CA GG + SY+ G D++VPVD+Y+PGCPP +A+IYG LL +++++ Sbjct: 208 ALGTCACSGGIFSNSYATKNGIDKVVPVDVYIPGCPPRPQAIIYGFLLALERVQK 262 >gi|312877215|ref|ZP_07737184.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Caldicellulosiruptor lactoaceticus 6A] gi|311796024|gb|EFR12384.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Caldicellulosiruptor lactoaceticus 6A] Length = 154 Score = 113 bits (283), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 47/120 (39%), Positives = 81/120 (67%), Gaps = 4/120 (3%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E++ P YD+ERFG +P+ +D+++V+G++ ++ A L+ +Y+QMP P+ V+ Sbjct: 24 CDIEILATLTPVYDVERFGIINVGNPKHADILVVSGSVNHRNARVLKTIYEQMPHPKAVV 83 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKKIRRV 180 ++G+CA GG + Y+ + G D +VPVD+YVPGC P EA++ GIL LL++K + + Sbjct: 84 AIGACACSGGIFKECYNTLGGADTVVPVDVYVPGCAPRPEAIMEGILKAAQLLEEKKKNM 143 >gi|20093160|ref|NP_619235.1| hydrogenase-3, subunit G (HycG homolog) [Methanosarcina acetivorans C2A] gi|19918502|gb|AAM07715.1| hydrogenase-3, subunit G (HycG-like protein) [Methanosarcina acetivorans C2A] Length = 170 Score = 113 bits (283), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 48/116 (41%), Positives = 77/116 (66%) Query: 64 CCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYV 123 +E+ P YD+ERFG + ASPR +D+++V G +T MA A+++ Y+ MP P++V Sbjct: 55 STEIEISNLGNPHYDVERFGISFVASPRHADILLVTGAVTLNMAEAVKKTYEAMPSPKFV 114 Query: 124 ISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179 +++G A GG Y SY+V+ G D+I+PVD+ +PG PP+ + ++ GIL L KK + Sbjct: 115 VAVGDDACDGGIYKDSYAVLSGVDKILPVDMKIPGNPPSPKEILKGILALVKKASK 170 >gi|260768583|ref|ZP_05877517.1| formate hydrogenlyase subunit 7 [Vibrio furnissii CIP 102972] gi|260616613|gb|EEX41798.1| formate hydrogenlyase subunit 7 [Vibrio furnissii CIP 102972] Length = 272 Score = 113 bits (283), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 52/122 (42%), Positives = 74/122 (60%), Gaps = 4/122 (3%) Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 G C +E+ A+ P YD ERFG ASPR +D+++ G +T M + R Y+ P+P Sbjct: 48 GCNACEIEIFAATTPVYDTERFGIKVVASPRHADILLFTGAVTRAMRAPALRAYEAAPDP 107 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176 + V+S G+C GG +H Y V G D+IVPVD+Y+PGCPPT A +YG LL++K Sbjct: 108 KIVVSYGACGCDGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAVALGLLEQK 167 Query: 177 IR 178 + Sbjct: 168 MH 169 >gi|90410736|ref|ZP_01218751.1| hydrogenase-4 component I [Photobacterium profundum 3TCK] gi|90328367|gb|EAS44665.1| hydrogenase-4 component I [Photobacterium profundum 3TCK] Length = 277 Score = 113 bits (282), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 55/141 (39%), Positives = 80/141 (56%), Gaps = 6/141 (4%) Query: 44 DQLVTWARTGSLMWMTFGLAC--CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGT 101 D L+ R + ++ C C +E+ A+ P +D ERFG ASPR +D+++ G Sbjct: 29 DALIKQIRRSAYVYRVDCGGCNGCEIEIFAATTPVFDTERFGIKVVASPRHADILLFTGA 88 Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP 161 +T M + R Y+ P+P+ V+S G+C GG +H Y V G D+IVPVD+Y+PGCPP Sbjct: 89 VTRAMRAPALRAYEAAPDPKIVVSYGACGCDGGIFHDLYCVWGGTDKIVPVDVYIPGCPP 148 Query: 162 TAEALIYGIL----LLQKKIR 178 T A IYG LL +K+ Sbjct: 149 TPAATIYGFAVALGLLDQKLH 169 >gi|21228424|ref|NP_634346.1| ech hydrogenase subunit [Methanosarcina mazei Go1] gi|20906901|gb|AAM32018.1| Ech Hydrogenase, Subunit [Methanosarcina mazei Go1] Length = 156 Score = 113 bits (282), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 45/107 (42%), Positives = 76/107 (71%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E++ P YD ERFG +P+Q+D+M+V G++ K + L+ +Y+Q+P+P+ V+ Sbjct: 20 CDIEVVACLTPLYDAERFGVLNIGTPKQADIMVVTGSVNYKNVNVLKNLYNQIPDPKVVL 79 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171 ++G+CA+ GG +H Y+V+ G D+I+PVD YVPGC P EA++ G++ Sbjct: 80 AVGACASTGGIFHNCYNVIGGVDQIIPVDAYVPGCCPRPEAILDGVV 126 >gi|304315647|ref|YP_003850792.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302777149|gb|ADL67708.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 157 Score = 113 bits (282), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 50/120 (41%), Positives = 75/120 (62%), Gaps = 5/120 (4%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E++ P YD+ERFG +P+ +D++IV GT+ K L+ VYD MPEP+ V+ Sbjct: 28 CDIEVLACMTPIYDMERFGMVNVGNPKHADILIVTGTVNEKNKDVLKNVYDMMPEPKVVV 87 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGI-----LLLQKKIRR 179 + G CA GG + Y+V+ G D+++PVD+Y+PGCP EA+I G+ +L K RR Sbjct: 88 AAGICACSGGIFRDCYNVLGGIDKVIPVDVYIPGCPAKPEAMIDGLYKAAQILKDKYSRR 147 >gi|73667700|ref|YP_303715.1| ech hydrogenase subunit C [Methanosarcina barkeri str. Fusaro] gi|3005969|emb|CAA76119.1| echC [Methanosarcina barkeri] gi|72394862|gb|AAZ69135.1| ech hydrogenase subunit C [Methanosarcina barkeri str. Fusaro] Length = 156 Score = 113 bits (282), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 44/107 (41%), Positives = 76/107 (71%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E++ P YD ERFG +P+Q+D+M+V G++ K + L+ +Y+Q+P+P+ V+ Sbjct: 20 CDIEVVACLTPLYDAERFGVLNIGTPKQADIMVVTGSVNYKNVNVLKNIYNQIPDPKVVL 79 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171 ++G+CA+ GG +H Y+V+ G D+++PVD YVPGC P EA++ G++ Sbjct: 80 AVGACASTGGIFHDCYNVIGGVDQVIPVDAYVPGCCPRPEAILDGVV 126 >gi|222529076|ref|YP_002572958.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Caldicellulosiruptor bescii DSM 6725] gi|312134931|ref|YP_004002269.1| NADH ubiquinone oxidoreductase 20 kda subunit [Caldicellulosiruptor owensensis OL] gi|312622668|ref|YP_004024281.1| NADH ubiquinone oxidoreductase 20 kda subunit [Caldicellulosiruptor kronotskyensis 2002] gi|222455923|gb|ACM60185.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Caldicellulosiruptor bescii DSM 6725] gi|311774982|gb|ADQ04469.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Caldicellulosiruptor owensensis OL] gi|312203135|gb|ADQ46462.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Caldicellulosiruptor kronotskyensis 2002] Length = 154 Score = 113 bits (282), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 47/120 (39%), Positives = 81/120 (67%), Gaps = 4/120 (3%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E++ P YD+ERFG +P+ +D+++V+G++ ++ A L+ +Y+QMP P+ V+ Sbjct: 24 CDIEILATLTPVYDVERFGIINVGNPKHADILVVSGSVNHRNARVLKTIYEQMPHPKAVV 83 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKKIRRV 180 ++G+CA GG + Y+ + G D +VPVD+YVPGC P EA++ GIL LL++K + + Sbjct: 84 AIGACACSGGIFKECYNTLGGADTVVPVDVYVPGCAPRPEAIMEGILKAAQLLEEKKKNM 143 >gi|323706313|ref|ZP_08117879.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Thermoanaerobacterium xylanolyticum LX-11] gi|323534365|gb|EGB24150.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Thermoanaerobacterium xylanolyticum LX-11] Length = 157 Score = 113 bits (282), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 49/119 (41%), Positives = 76/119 (63%), Gaps = 4/119 (3%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E++ P YD+ERFG +P+ +D++IV GT+ K L+ VYD MP+P+ V+ Sbjct: 28 CDIEVLACMTPIYDMERFGMVNVGNPKHADILIVTGTVNEKNKDVLKNVYDMMPDPKVVV 87 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKKIRR 179 + G CA GG + Y+V+ G D+++PVD+YVPGCP EA+I G+ +L++K R Sbjct: 88 AAGICACSGGIFRDCYNVLGGIDKVIPVDVYVPGCPAKPEAMIDGLYKAAQILKEKYSR 146 >gi|90407577|ref|ZP_01215758.1| hydrogenase-4 component I [Psychromonas sp. CNPT3] gi|90311280|gb|EAS39384.1| hydrogenase-4 component I [Psychromonas sp. CNPT3] Length = 261 Score = 112 bits (281), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 52/118 (44%), Positives = 72/118 (61%), Gaps = 4/118 (3%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E+ A+ P +D ERFG ASPR +D+++ G +T M R Y+ P+P+ VI Sbjct: 52 CEIEIFAATTPVFDTERFGIKIVASPRHADILLFTGAVTRAMRMPALRAYEAAPDPKIVI 111 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKKIR 178 S G+C GG +H Y V G D+IVPVD+Y+PGCPPT A IYG LL +K++ Sbjct: 112 SYGACGCDGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATIYGFAMALGLLDQKLK 169 >gi|307130311|ref|YP_003882327.1| hydrogenase 4, Fe-S subunit [Dickeya dadantii 3937] gi|306527840|gb|ADM97770.1| hydrogenase 4, Fe-S subunit [Dickeya dadantii 3937] Length = 263 Score = 112 bits (281), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 53/122 (43%), Positives = 73/122 (59%), Gaps = 4/122 (3%) Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 G C +E+ A P +D ERFG ASPR +D+++ G +T M S R Y+ P+P Sbjct: 46 GCNGCEIEIFSAITPLFDAERFGIKVVASPRHADILLFTGAVTRAMRSPALRAYESAPDP 105 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176 + IS G+C GGG +H Y V G D+IVP+D+Y+PGCPPT A IYG LL++K Sbjct: 106 KICISYGACGCGGGIFHDLYCVWGGSDKIVPIDVYIPGCPPTPAATIYGFAVALGLLEQK 165 Query: 177 IR 178 + Sbjct: 166 LH 167 >gi|255322773|ref|ZP_05363915.1| NADH ubiquinone oxidoreductase, 20 Kd subunit [Campylobacter showae RM3277] gi|255300115|gb|EET79390.1| NADH ubiquinone oxidoreductase, 20 Kd subunit [Campylobacter showae RM3277] Length = 276 Score = 112 bits (281), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 52/145 (35%), Positives = 88/145 (60%), Gaps = 3/145 (2%) Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLAC--CAVEMMQASMPRYDLERFGFA 85 ++ I L ++ L R+ S+ + G +C C +E+ A P +D ERFGF Sbjct: 5 QVPENIKTANDLTAKLEHLKNIKRSFSVYRIDCG-SCNGCEIEIFAAITPMWDPERFGFK 63 Query: 86 PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRG 145 A+PR +D+++ +G +T +M L R Y+ P+P+ V++ G+C + GG ++ +YSV G Sbjct: 64 LVANPRHADILVCSGPVTRQMYYPLLRAYEAAPDPKIVVAFGACGSTGGIFYDAYSVWGG 123 Query: 146 CDRIVPVDIYVPGCPPTAEALIYGI 170 D+I+PVD+Y+PGCPP ++IYG+ Sbjct: 124 IDKIIPVDVYIPGCPPHPASVIYGL 148 >gi|260892452|ref|YP_003238549.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Ammonifex degensii KC4] gi|260864593|gb|ACX51699.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Ammonifex degensii KC4] Length = 143 Score = 112 bits (281), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 52/136 (38%), Positives = 86/136 (63%), Gaps = 3/136 (2%) Query: 46 LVTWARTGSLMWMTF-GLAC--CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL 102 L+T AR S + F +C C +E++ P YD+ERFG +P+ +D+++V G Sbjct: 3 LLTKARVKSPWLLHFCSGSCNGCDIEILACLTPYYDVERFGILHMGNPKHADILLVTGPA 62 Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162 + L+ +Y QMP+P+ V+++G+CA GG +H Y+++ G D+++PVD+YVPGC Sbjct: 63 NRRNYKVLQNLYAQMPDPKVVVAVGTCACTGGIFHNCYNIMGGIDKVIPVDVYVPGCAAR 122 Query: 163 AEALIYGILLLQKKIR 178 EA+I G++L KK+R Sbjct: 123 PEAIIDGVVLALKKLR 138 >gi|257460517|ref|ZP_05625618.1| formate hydrogenlyase subunit 7 [Campylobacter gracilis RM3268] gi|257441848|gb|EEV16990.1| formate hydrogenlyase subunit 7 [Campylobacter gracilis RM3268] Length = 274 Score = 112 bits (280), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 52/145 (35%), Positives = 88/145 (60%), Gaps = 3/145 (2%) Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLAC--CAVEMMQASMPRYDLERFGFA 85 ++ I + L ++ L R+ S+ + G +C C +E+ + P +D ERFGF Sbjct: 5 QVPENIKNANDLTAKLELLKNIKRSFSVYRIDCG-SCNGCEIEIFASITPMWDPERFGFK 63 Query: 86 PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRG 145 A+PR +D+++ G +T +M L R Y+ P+P+ V+++ +C + GG +H +YSV G Sbjct: 64 LVANPRHADILVCTGPVTRQMYYPLLRAYEAAPDPKIVVALRACGSTGGIFHDAYSVWSG 123 Query: 146 CDRIVPVDIYVPGCPPTAEALIYGI 170 D+IVPVD+Y+PGCPP ++IYG+ Sbjct: 124 IDKIVPVDVYIPGCPPHPASIIYGL 148 >gi|34536232|dbj|BAC87587.1| unnamed protein product [Homo sapiens] Length = 155 Score = 112 bits (280), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 55/86 (63%), Positives = 67/86 (77%), Gaps = 1/86 (1%) Query: 29 ISSEITHKG-FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87 ++ + + +G ++V +D LV WAR SL MTFGLACCAVEMM + PRYD++RFG R Sbjct: 59 VAPKPSSRGEYVVAKLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFR 118 Query: 88 ASPRQSDVMIVAGTLTNKMASALRRV 113 ASPRQSDVMIVAGTLTNKMA ALR+V Sbjct: 119 ASPRQSDVMIVAGTLTNKMAPALRKV 144 >gi|169247665|gb|ACA51664.1| EchC [Thermoanaerobacterium saccharolyticum] Length = 157 Score = 112 bits (280), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 50/120 (41%), Positives = 75/120 (62%), Gaps = 5/120 (4%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E++ P YD+ERFG +P+ +D++IV GT+ K L+ VYD MP+P+ V+ Sbjct: 28 CDIEVLACMTPIYDMERFGMVNVGNPKHADILIVTGTVNEKNKDVLKNVYDMMPDPKVVV 87 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGI-----LLLQKKIRR 179 + G CA GG + Y+V+ G D+++PVD+YVPGCP EA+I G+ +L K RR Sbjct: 88 AAGICACSGGIFRDCYNVLGGIDKVIPVDVYVPGCPAKPEAMIDGLYKAAQILKDKYSRR 147 >gi|312136850|ref|YP_004004187.1| NADH ubiquinone oxidoreductase 20 kda subunit [Methanothermus fervidus DSM 2088] gi|311224569|gb|ADP77425.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanothermus fervidus DSM 2088] Length = 157 Score = 112 bits (280), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 48/116 (41%), Positives = 78/116 (67%), Gaps = 4/116 (3%) Query: 56 MWM----TFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALR 111 MW+ + G C +E + A P YD+ER G +SPR +D+++V G +T + S+L+ Sbjct: 18 MWLFHFNSGGCNGCDIEFVAALTPLYDVERMGIQLVSSPRHADILVVTGPVTLQSLSSLK 77 Query: 112 RVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALI 167 +Y+QMP P+YVI++G+CA G + SY+V+ G D+++PVD+Y+PGCPP+ A+ Sbjct: 78 LIYEQMPSPKYVIAVGNCACDGCVFKDSYNVLEGVDKVLPVDVYIPGCPPSPRAIF 133 >gi|305664299|ref|YP_003860587.1| ech hydrogenase subunit C [Ignisphaera aggregans DSM 17230] gi|304378868|gb|ADM28707.1| ech hydrogenase subunit C [Ignisphaera aggregans DSM 17230] Length = 145 Score = 112 bits (280), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 54/119 (45%), Positives = 80/119 (67%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E++ A P YD ER+G S R D++IV G +T K A L+R+Y QMP +YV+ Sbjct: 22 CDIEVLAAITPLYDPERYGIKLAPSIRHGDILIVTGVVTKKAAERLKRLYSQMPNLKYVV 81 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 ++G+CA GG + SYSVV G ++++PVD+YVPGCPP E ++ +LLL ++ + V NV Sbjct: 82 AVGACAYDGGVFKGSYSVVGGVNKVIPVDVYVPGCPPRPEEILRALLLLLQREKGVENV 140 >gi|11499417|ref|NP_070656.1| F420H2:quinone oxidoreductase, 39.7 kDa subunit, putative [Archaeoglobus fulgidus DSM 4304] gi|2648716|gb|AAB89421.1| F420H2:quinone oxidoreductase, 39.7 kDa subunit, putative [Archaeoglobus fulgidus DSM 4304] Length = 353 Score = 112 bits (280), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 57/130 (43%), Positives = 77/130 (59%), Gaps = 1/130 (0%) Query: 49 WARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108 W SL + ACC E+ A YD ER G RQ++++IV G +T KMA Sbjct: 22 WGTKWSLWPVHLVTACCGAELAHAFACGYDGERIGALNYGIARQTNLIIVEGAITRKMAK 81 Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168 LR ++QMP+P++VI MG+C GG + Y +V+ D +VPVD ++PGCPPT EAL+ Sbjct: 82 VLRITWEQMPDPKFVIVMGACGLQGGIFWNGYHMVKPSD-VVPVDFFIPGCPPTPEALLR 140 Query: 169 GILLLQKKIR 178 GI LQ KI Sbjct: 141 GIRQLQFKIE 150 >gi|21227166|ref|NP_633088.1| formate hydrogenlyase subunit 7 [Methanosarcina mazei Go1] gi|20905501|gb|AAM30760.1| Formate hydrogenlyase subunit 7 [Methanosarcina mazei Go1] Length = 170 Score = 112 bits (280), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 51/116 (43%), Positives = 75/116 (64%) Query: 64 CCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYV 123 +E+ P YD+ERFG + ASPR +DV++V G +T MA A ++ Y+ MP P+YV Sbjct: 55 STEMEISNLGNPHYDVERFGISFVASPRHADVLLVTGAVTLNMAEAAKKTYEAMPYPKYV 114 Query: 124 ISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179 I++G A GG Y SY+V+ G D+I+PVD+ +PG PP+ + ++ GI L KK R Sbjct: 115 IAVGDDACDGGIYKGSYAVLGGVDKILPVDVKIPGNPPSPKEILQGIFALVKKARE 170 >gi|325290171|ref|YP_004266352.1| ech hydrogenase subunit C [Syntrophobotulus glycolicus DSM 8271] gi|324965572|gb|ADY56351.1| ech hydrogenase subunit C [Syntrophobotulus glycolicus DSM 8271] Length = 145 Score = 112 bits (279), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 45/123 (36%), Positives = 80/123 (65%), Gaps = 4/123 (3%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E++ P YD+ERFG +P+ +D+ ++ G++ + + ++ +YDQMPEP+ V+ Sbjct: 21 CDIEVLACLTPLYDVERFGVLNIGNPKHADIFVITGSVNEQNKTVIKNIYDQMPEPKVVV 80 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKKIRRV 180 ++G+CA GG + Y+V G D+++PVD+YVPGC EA+I G++ +L+ K + + Sbjct: 81 AIGACATSGGVFRQCYNVQGGVDKVIPVDVYVPGCAARPEAIIDGVVQGLAVLESKYKNM 140 Query: 181 GNV 183 G V Sbjct: 141 GKV 143 >gi|251790300|ref|YP_003005021.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Dickeya zeae Ech1591] gi|247538921|gb|ACT07542.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Dickeya zeae Ech1591] Length = 263 Score = 112 bits (279), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 52/122 (42%), Positives = 73/122 (59%), Gaps = 4/122 (3%) Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 G C +E+ A P +D ERFG ASPR +D+++ G +T M + R Y+ P+P Sbjct: 46 GCNGCEIEIFSAITPLFDAERFGIKVVASPRHADILLFTGAVTRAMRTPALRAYESAPDP 105 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176 + IS G+C GGG +H Y V G D+IVP+D+Y+PGCPPT A IYG LL++K Sbjct: 106 KICISYGACGCGGGIFHDLYCVWGGSDKIVPIDVYIPGCPPTPAATIYGFAVALGLLEQK 165 Query: 177 IR 178 + Sbjct: 166 LH 167 >gi|271501147|ref|YP_003334172.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Dickeya dadantii Ech586] gi|270344702|gb|ACZ77467.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Dickeya dadantii Ech586] Length = 262 Score = 112 bits (279), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 52/122 (42%), Positives = 73/122 (59%), Gaps = 4/122 (3%) Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 G C +E+ A P +D ERFG ASPR +D+++ G +T M + R Y+ P+P Sbjct: 46 GCNGCEIEIFSAITPLFDAERFGIKVVASPRHADILLFTGAVTRAMRTPALRAYESAPDP 105 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176 + IS G+C GGG +H Y V G D+IVP+D+Y+PGCPPT A IYG LL++K Sbjct: 106 KICISYGACGCGGGIFHDLYCVWGGSDKIVPIDVYIPGCPPTPAATIYGFAVALGLLEQK 165 Query: 177 IR 178 + Sbjct: 166 LH 167 >gi|242238721|ref|YP_002986902.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Dickeya dadantii Ech703] gi|242130778|gb|ACS85080.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Dickeya dadantii Ech703] Length = 263 Score = 112 bits (279), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 52/122 (42%), Positives = 73/122 (59%), Gaps = 4/122 (3%) Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 G C +E+ A P +D ERFG ASPR +D+++ G +T M + R Y+ P+P Sbjct: 46 GCNGCEIEIFSAITPLFDAERFGIKVVASPRHADILLFTGAVTRAMRTPALRAYESAPDP 105 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176 + IS G+C GGG +H Y V G D+IVP+D+Y+PGCPPT A IYG LL++K Sbjct: 106 KICISYGACGCGGGIFHDLYCVWGGSDKIVPIDVYIPGCPPTPAATIYGFAVALGLLEQK 165 Query: 177 IR 178 + Sbjct: 166 LH 167 >gi|149194128|ref|ZP_01871226.1| HYDROGENASE-Ni,Fe-hydrogenase III small subunit [Caminibacter mediatlanticus TB-2] gi|149136081|gb|EDM24559.1| HYDROGENASE-Ni,Fe-hydrogenase III small subunit [Caminibacter mediatlanticus TB-2] Length = 280 Score = 112 bits (279), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 50/120 (41%), Positives = 77/120 (64%), Gaps = 4/120 (3%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E+ A P +D ERFGF ASPR +D+++ G LT +M L R Y+ P+P+ VI Sbjct: 46 CEIEIFAAITPMWDPERFGFKLVASPRHADILLCTGPLTRQMYYPLLRAYEATPDPKVVI 105 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKKIRRV 180 ++G+C GG +H SY+V G D +PVD+Y+PGCPP +I+G+ +L +K+++V Sbjct: 106 AVGACGCTGGIFHDSYAVWSGIDSTLPVDVYIPGCPPHPATIIHGLAVALGILDQKMKKV 165 >gi|326390323|ref|ZP_08211882.1| NADH-quinone oxidoreductase, B subunit [Thermoanaerobacter ethanolicus JW 200] gi|325993600|gb|EGD52033.1| NADH-quinone oxidoreductase, B subunit [Thermoanaerobacter ethanolicus JW 200] Length = 198 Score = 112 bits (279), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 52/136 (38%), Positives = 83/136 (61%) Query: 43 VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL 102 +D L+ + R S+ + + C AVE+ + R+D+ERFG P A+PRQ+DV++V G + Sbjct: 13 IDNLIDFFRKRSIWMLHYCTGCGAVELPPSMTSRWDIERFGIVPMATPRQADVLLVTGYV 72 Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162 + K + ++Y+QMPEP++V++ GSC GG Y SY+ + +PVDI V GC P Sbjct: 73 SLKTLKRIIKIYEQMPEPKWVLAFGSCTVNGGIYWDSYNTITNLAEYIPVDITVSGCMPR 132 Query: 163 AEALIYGILLLQKKIR 178 EA+I + L + I+ Sbjct: 133 PEAVIDALQTLMEMIQ 148 >gi|217077746|ref|YP_002335464.1| NADH dehydrogenase subunit B [Thermosipho africanus TCF52B] gi|217037601|gb|ACJ76123.1| NADH dehydrogenase beta subunit [Thermosipho africanus TCF52B] Length = 180 Score = 111 bits (278), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 58/149 (38%), Positives = 83/149 (55%), Gaps = 10/149 (6%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93 +G DQL R+ SL + + C A+E+ + R+D+ERFG P A+PRQ+ Sbjct: 4 NERGIWEKIADQL----RSKSLWMLYYCTGCGAIELPPSMTSRFDMERFGMGPMATPRQT 59 Query: 94 DVMIVAGTLTNKMASALRRV---YDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150 D++ + G L+ K LRRV Y+ M EP+YV+ GSC GG Y+ SY+ + D + Sbjct: 60 DILFITGYLSTK---TLRRVIYTYEMMSEPKYVVGFGSCTLNGGIYYDSYATINKLDNYI 116 Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRR 179 PVD+Y+ GC P EAL+ L K IR Sbjct: 117 PVDLYIAGCMPRPEALLNAFNELMKMIRN 145 >gi|315231251|ref|YP_004071687.1| membrane bound hydrogenase NiFe-hydrogenase small subunit [Thermococcus barophilus MP] gi|315184279|gb|ADT84464.1| membrane bound hydrogenase NiFe-hydrogenase small subunit [Thermococcus barophilus MP] Length = 151 Score = 111 bits (278), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 47/121 (38%), Positives = 81/121 (66%), Gaps = 1/121 (0%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E++ A PRYD ERFG +PR +D+++V G +T++ ++ +Y+Q P+P+ VI Sbjct: 30 CDIEIIAALTPRYDAERFGVKLVGTPRHADILLVTGPITDQSLERVKLIYEQTPDPKVVI 89 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILL-LQKKIRRVGNV 183 ++G+C GG ++ S D+ +PVD++VPGCPP EA++YG++L L+K I+++ Sbjct: 90 AVGACPTGGSVFYESPFTNAPLDKHIPVDVFVPGCPPRPEAILYGVVLGLEKLIKKIEGE 149 Query: 184 K 184 K Sbjct: 150 K 150 >gi|307265396|ref|ZP_07546952.1| NADH-quinone oxidoreductase, B subunit [Thermoanaerobacter wiegelii Rt8.B1] gi|306919510|gb|EFN49728.1| NADH-quinone oxidoreductase, B subunit [Thermoanaerobacter wiegelii Rt8.B1] Length = 198 Score = 111 bits (278), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 52/136 (38%), Positives = 83/136 (61%) Query: 43 VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL 102 +D L+ + R S+ + + C AVE+ + R+D+ERFG P A+PRQ+DV++V G + Sbjct: 13 IDNLIDFFRKRSIWILHYCTGCGAVELPPSMTSRWDIERFGIVPMATPRQADVLLVTGYV 72 Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162 + K + ++Y+QMPEP++V++ GSC GG Y SY+ + +PVDI V GC P Sbjct: 73 SLKTLKRIIKIYEQMPEPKWVLAFGSCTVNGGIYWDSYNTITNLAEYIPVDITVSGCMPR 132 Query: 163 AEALIYGILLLQKKIR 178 EA+I + L + I+ Sbjct: 133 PEAVIDALQTLMEMIQ 148 >gi|145591231|ref|YP_001153233.1| NADH-quinone oxidoreductase, B subunit [Pyrobaculum arsenaticum DSM 13514] gi|145282999|gb|ABP50581.1| NADH-quinone oxidoreductase, B subunit [Pyrobaculum arsenaticum DSM 13514] Length = 196 Score = 111 bits (278), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 57/137 (41%), Positives = 88/137 (64%), Gaps = 1/137 (0%) Query: 42 SVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGT 101 ++++ W SL + +CC VE+ S P +D ER+G P + RQS+V++V GT Sbjct: 21 KLEKIFNWGVRWSLWPVHLVTSCCGVEVAHTSGPGFDAERWGVLPFHTMRQSNVILVEGT 80 Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP 161 +T KMA L+ VY+QMPEP++V++MG+CA GG + SY VV+ + VD+Y+ GCPP Sbjct: 81 ITRKMAKVLKMVYEQMPEPKFVLAMGACAVRGGLFWNSYHVVQVDTVVP-VDVYIAGCPP 139 Query: 162 TAEALIYGILLLQKKIR 178 T EA++ ++L KI+ Sbjct: 140 TPEAVVRAFIMLHNKIK 156 >gi|116255492|ref|YP_771325.1| putative formate hydrogenlyase subunit 7 [Rhizobium leguminosarum bv. viciae 3841] gi|115260140|emb|CAK03241.1| putative formate hydrogenlyase subunit 7 [Rhizobium leguminosarum bv. viciae 3841] Length = 177 Score = 111 bits (277), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 49/119 (41%), Positives = 75/119 (63%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +EM YD+ERFG ASPR +DV++V G +T M AL R Y P+P++V+ Sbjct: 58 CELEMHALGNTFYDIERFGLRFVASPRHADVLLVTGPVTRNMVQALERTYIATPDPKWVV 117 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 ++G C GG + SY+V+ G ++VPVD+++PGCPP+ ++ G+L L + + R G V Sbjct: 118 ALGDCGRDGGCFAGSYAVLGGVSKVVPVDLHIPGCPPSPMDILKGLLALLEDVNREGRV 176 >gi|147919461|ref|YP_686799.1| hydrogenase, small subunit-like protein (HycG-like) [uncultured methanogenic archaeon RC-I] gi|110622195|emb|CAJ37473.1| hydrogenase, small subunit-like protein (HycG-like) [uncultured methanogenic archaeon RC-I] Length = 247 Score = 111 bits (277), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 51/108 (47%), Positives = 71/108 (65%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C VE+ S YD+ERFG ASPR +D ++V G +T M L + Y+ P+P+ VI Sbjct: 130 CEVEVNSLSNAIYDIERFGLHIVASPRHADALLVTGPVTRNMERGLMQSYNATPDPKMVI 189 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILL 172 +MG+CA GG + SY+V G D +VPVD+Y+PGCPP +A+I GI+L Sbjct: 190 AMGACAITGGIFRDSYAVYNGVDALVPVDVYIPGCPPRPQAIIQGIML 237 >gi|150021104|ref|YP_001306458.1| NADH dehydrogenase subunit B [Thermosipho melanesiensis BI429] gi|149793625|gb|ABR31073.1| NADH-quinone oxidoreductase, B subunit [Thermosipho melanesiensis BI429] Length = 180 Score = 111 bits (277), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 56/131 (42%), Positives = 78/131 (59%), Gaps = 6/131 (4%) Query: 51 RTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASAL 110 R+ SL + + C AVE+ R+D+ERFG P A+PRQ+D++ + G L+ A L Sbjct: 17 RSKSLWMLHYCTGCGAVELPPTMTSRFDMERFGMGPMATPRQADILFITGYLS---AKTL 73 Query: 111 RRV---YDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALI 167 RRV Y+QM EP+YVI GSC GG Y+ SY+ + D +PVD+Y+ GC P EAL+ Sbjct: 74 RRVIYTYEQMAEPKYVIGFGSCTLNGGIYYDSYATINKLDYYIPVDLYIAGCMPRPEALL 133 Query: 168 YGILLLQKKIR 178 L + IR Sbjct: 134 EAFNKLMRMIR 144 >gi|238788858|ref|ZP_04632649.1| Formate hydrogenlyase subunit 7 [Yersinia frederiksenii ATCC 33641] gi|238723163|gb|EEQ14812.1| Formate hydrogenlyase subunit 7 [Yersinia frederiksenii ATCC 33641] Length = 224 Score = 110 bits (276), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 50/118 (42%), Positives = 72/118 (61%), Gaps = 4/118 (3%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E+ A P +D ERFG ASPR +D+++ G +T M + R Y+ P+P+ + Sbjct: 9 CEIEIFAAITPLFDTERFGIKVVASPRHADILLFTGAVTRAMRTPALRAYESAPDPKICV 68 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKKIR 178 S G+C GGG +H Y V G D IVP+D+Y+PGCPPT A IYG LL++K++ Sbjct: 69 SYGACGCGGGIFHDLYCVWGGSDTIVPIDVYIPGCPPTPAATIYGFAVALGLLEQKLK 126 >gi|242399279|ref|YP_002994703.1| Membrane-bound hydrogenase MBH 1, subunit Mbh1J (hydrogenase subunit) [Thermococcus sibiricus MM 739] gi|242265672|gb|ACS90354.1| Membrane-bound hydrogenase MBH 1, subunit Mbh1J (hydrogenase subunit) [Thermococcus sibiricus MM 739] Length = 156 Score = 110 bits (276), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 46/121 (38%), Positives = 80/121 (66%), Gaps = 1/121 (0%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E++ A PRYD ERFG +PR +D+++V G +T++ ++ +Y+Q P+P+ V+ Sbjct: 35 CDIEIIAALTPRYDAERFGIKLVGTPRHADILLVTGPITDQSLERVKLIYEQTPDPKVVV 94 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILL-LQKKIRRVGNV 183 ++G+C GG + S DR +PVD+++PGCPP EA++YG++L L+K I+++ Sbjct: 95 AIGACPTGGSVFFESPFTNAPLDRHIPVDVFIPGCPPRPEAVLYGVVLGLEKFIKKIEGE 154 Query: 184 K 184 K Sbjct: 155 K 155 >gi|119871850|ref|YP_929857.1| NADH-quinone oxidoreductase, B subunit [Pyrobaculum islandicum DSM 4184] gi|119673258|gb|ABL87514.1| NADH-quinone oxidoreductase, B subunit [Pyrobaculum islandicum DSM 4184] gi|164472821|dbj|BAF32936.2| NADH-ubiquinone oxidoreductase subunit [Pyrobaculum islandicum DSM 4184] Length = 183 Score = 110 bits (276), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 60/130 (46%), Positives = 84/130 (64%), Gaps = 1/130 (0%) Query: 49 WARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108 W SL + +CC VE+ S P +D ER+G P + RQS+V++V GT+T KMA Sbjct: 21 WGVRWSLWPVHLVTSCCGVEVAHTSGPGFDAERWGVLPFHTMRQSNVILVEGTITKKMAK 80 Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168 L+ VY+QMPEP+YVI+MG+CA GG + SY VV+ + VD+Y+ GCPPT EA+I Sbjct: 81 VLKMVYEQMPEPKYVIAMGACAVRGGLFWNSYHVVQVDTVVP-VDVYIAGCPPTPEAVIR 139 Query: 169 GILLLQKKIR 178 ++L KI+ Sbjct: 140 AFIMLHNKIK 149 >gi|18977816|ref|NP_579173.1| NADH dehydrogenase subunit B [Pyrococcus furiosus DSM 3638] gi|18893567|gb|AAL81568.1| NADH dehydrogenase subunit [Pyrococcus furiosus DSM 3638] Length = 192 Score = 110 bits (275), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 53/135 (39%), Positives = 77/135 (57%) Query: 44 DQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLT 103 + L WAR SL + F C +EM RYDLERFG P SPRQ D+ ++ G +T Sbjct: 8 EPLFNWARKKSLWIVAFCTGCGGIEMPPLMTARYDLERFGIMPDPSPRQYDLFLITGYVT 67 Query: 104 NKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTA 163 K + Y+ P+P+YV++ GSC GG Y +Y+ ++ D+ +PVD+Y+ GC P Sbjct: 68 PKTLKRIIITYEMAPDPKYVLAHGSCPINGGIYWDAYNAIKQLDKYIPVDVYIAGCMPRP 127 Query: 164 EALIYGILLLQKKIR 178 EA++ GI L + I Sbjct: 128 EAVMDGIKKLMEMIE 142 >gi|225466336|ref|XP_002274046.1| PREDICTED: similar to NADH-plastoquinone oxidoreductase subunit K, partial [Vitis vinifera] Length = 155 Score = 110 bits (275), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 50/89 (56%), Positives = 69/89 (77%), Gaps = 1/89 (1%) Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIV 150 Q+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++ Sbjct: 1 QADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLI 60 Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRR 179 PVD+Y+PGCPP EA+I I L+KKI R Sbjct: 61 PVDVYLPGCPPKPEAVIDAITKLRKKISR 89 >gi|14520920|ref|NP_126395.1| NADH dehydrogenase subunit B [Pyrococcus abyssi GE5] gi|5458137|emb|CAB49626.1| nuoB NADH dehydrogenase I, subunit B [Pyrococcus abyssi GE5] Length = 195 Score = 110 bits (275), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 52/135 (38%), Positives = 78/135 (57%) Query: 44 DQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLT 103 + L WAR SL ++F C +EM RYD+ERFG P SPRQ D+ ++ G +T Sbjct: 11 EPLFNWARKKSLWIVSFCTGCGGIEMPPLMTSRYDIERFGMIPDPSPRQYDLFLITGYVT 70 Query: 104 NKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTA 163 K + Y+ P+P+YV++ GSC GG Y SY+ ++ D+ +PVD+++ GC P Sbjct: 71 PKTLKRIIITYELSPDPKYVLAHGSCPLNGGIYWDSYNAIKHLDKYIPVDVFIAGCMPRP 130 Query: 164 EALIYGILLLQKKIR 178 EA++ GI L + I Sbjct: 131 EAVLDGIYKLMEMIE 145 >gi|238799239|ref|ZP_04642686.1| Formate hydrogenlyase subunit 7 [Yersinia mollaretii ATCC 43969] gi|238716904|gb|EEQ08773.1| Formate hydrogenlyase subunit 7 [Yersinia mollaretii ATCC 43969] Length = 250 Score = 110 bits (275), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 50/118 (42%), Positives = 72/118 (61%), Gaps = 4/118 (3%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E+ + P +D ERFG ASPR +D+++ G +T M S R Y+ P+P+ + Sbjct: 35 CEIEIFSSITPLFDTERFGIKVVASPRHADILLFTGAVTRAMRSPALRAYESAPDPKICV 94 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKKIR 178 S G+C GGG +H Y V G D IVP+D+Y+PGCPPT A IYG LL++K++ Sbjct: 95 SYGACGCGGGIFHDLYCVWGGSDTIVPIDVYIPGCPPTPAATIYGFAVALGLLEQKLK 152 >gi|322831876|ref|YP_004211903.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Rahnella sp. Y9602] gi|321167077|gb|ADW72776.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Rahnella sp. Y9602] Length = 265 Score = 110 bits (275), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 53/122 (43%), Positives = 71/122 (58%), Gaps = 4/122 (3%) Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 G C +E+ A P +D ERFG SPR +D+++ G +T M R +D P+P Sbjct: 48 GCNGCEIEIFAAISPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRIPALRAWDSAPDP 107 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176 + IS G+C N GG +H Y V G D+IVPVD+Y+PGCPPT A IYG LL +K Sbjct: 108 KICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATIYGFAMALGLLDQK 167 Query: 177 IR 178 I+ Sbjct: 168 IK 169 >gi|332161095|ref|YP_004297672.1| hydrogenase-4 component I [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325665325|gb|ADZ41969.1| hydrogenase-4 component I [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330863809|emb|CBX73904.1| formate hydrogenlyase subunit 7 [Yersinia enterocolitica W22703] Length = 267 Score = 110 bits (274), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 49/118 (41%), Positives = 72/118 (61%), Gaps = 4/118 (3%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E+ + P +D ERFG ASPR +D+++ G +T M + R Y+ P+P+ + Sbjct: 53 CEIEIFSSITPLFDTERFGIKVVASPRHADILLFTGAVTRAMRTPALRAYESAPDPKICV 112 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKKIR 178 S G+C GGG +H Y V G D IVP+D+Y+PGCPPT A IYG LL++K++ Sbjct: 113 SYGACGCGGGIFHDLYCVWGGSDTIVPIDVYIPGCPPTPAATIYGFAVALGLLEQKLK 170 >gi|317054477|ref|YP_004118502.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Pantoea sp. At-9b] gi|316952472|gb|ADU71946.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Pantoea sp. At-9b] Length = 254 Score = 110 bits (274), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 52/122 (42%), Positives = 71/122 (58%), Gaps = 4/122 (3%) Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 G C +E+ A P +D ERFG SPR +D+++ G +T M S R + P+P Sbjct: 47 GCNGCEIEIFAALTPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDP 106 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176 + IS G+C N GG +H Y V G D+IVPVD+Y+PGCPPT A +YG LL++K Sbjct: 107 KICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQK 166 Query: 177 IR 178 I Sbjct: 167 IH 168 >gi|219853280|ref|YP_002467712.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanosphaerula palustris E1-9c] gi|219547539|gb|ACL17989.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanosphaerula palustris E1-9c] Length = 147 Score = 110 bits (274), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 44/121 (36%), Positives = 78/121 (64%), Gaps = 4/121 (3%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E++ P YDLERFG +P+ +D+ +V G + + + ++ +YDQMPEP+ VI Sbjct: 21 CDIEVLACLTPMYDLERFGIINTGNPKHADIFLVTGGVNEQNRAVIKNIYDQMPEPKVVI 80 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKKIRRV 180 ++G CA GG + Y+++ G D+++PVD+Y+PGCP E +I ++ +L++K R++ Sbjct: 81 ALGVCATSGGVFRECYNIIGGIDKVIPVDVYLPGCPVRPEQIIDSVVKSLSILEEKQRQL 140 Query: 181 G 181 Sbjct: 141 A 141 >gi|318604974|emb|CBY26472.1| formate hydrogenlyase subunit 7 [Yersinia enterocolitica subsp. palearctica Y11] Length = 267 Score = 110 bits (274), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 49/118 (41%), Positives = 72/118 (61%), Gaps = 4/118 (3%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E+ + P +D ERFG ASPR +D+++ G +T M + R Y+ P+P+ + Sbjct: 53 CEIEIFSSITPLFDTERFGIKVVASPRHADILLFTGAVTRAMRTPALRAYESAPDPKICV 112 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKKIR 178 S G+C GGG +H Y V G D IVP+D+Y+PGCPPT A IYG LL++K++ Sbjct: 113 SYGACGCGGGIFHDLYCVWGGSDTIVPIDVYIPGCPPTPAATIYGFAVALGLLEQKLK 170 >gi|270263099|ref|ZP_06191369.1| hypothetical protein SOD_d01150 [Serratia odorifera 4Rx13] gi|270042787|gb|EFA15881.1| hypothetical protein SOD_d01150 [Serratia odorifera 4Rx13] Length = 265 Score = 110 bits (274), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 54/123 (43%), Positives = 71/123 (57%), Gaps = 4/123 (3%) Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 G C +E+ A P +D ERFG SPR +D+++ G +T M R + P+P Sbjct: 48 GCNGCEIEIFAAISPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRIPAIRAWQASPDP 107 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176 + IS G+C N GG +H Y V G DRIVPVD+Y+PGCPPT A IYG LL++K Sbjct: 108 KICISYGACGNSGGIFHDLYCVWGGTDRIVPVDVYIPGCPPTPAATIYGFAMALGLLEQK 167 Query: 177 IRR 179 I R Sbjct: 168 IHR 170 >gi|260462448|ref|ZP_05810655.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Mesorhizobium opportunistum WSM2075] gi|259031644|gb|EEW32913.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Mesorhizobium opportunistum WSM2075] Length = 179 Score = 110 bits (274), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 47/113 (41%), Positives = 73/113 (64%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +EM + +D+ERFG ASPR +DV++V G +T M AL+R YD P P++V+ Sbjct: 58 CELEMHALNNAFHDIERFGIRFVASPRHADVLLVTGPVTKNMREALKRTYDATPNPKWVV 117 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 ++G CA GG + SY+V+RG +PVD+++PGCPP ++ G+L L + + Sbjct: 118 ALGDCAGNGGCFAGSYAVMRGVSEALPVDLHIPGCPPPPIEILKGLLTLLEGV 170 >gi|123443021|ref|YP_001008384.1| hydrogenase-4 component I [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122089982|emb|CAL12839.1| hydrogenase-4 component I [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 268 Score = 109 bits (273), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 49/118 (41%), Positives = 72/118 (61%), Gaps = 4/118 (3%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E+ + P +D ERFG ASPR +D+++ G +T M + R Y+ P+P+ + Sbjct: 54 CEIEIFSSITPLFDTERFGIKVVASPRHADILLFTGAVTRAMRTPALRAYESAPDPKICV 113 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKKIR 178 S G+C GGG +H Y V G D IVP+D+Y+PGCPPT A IYG LL++K++ Sbjct: 114 SYGACGCGGGIFHDLYCVWGGSDTIVPIDVYIPGCPPTPAATIYGFAVALGLLEQKLK 171 >gi|57641152|ref|YP_183630.1| NADH dehydrogenase subunit B [Thermococcus kodakarensis KOD1] gi|57159476|dbj|BAD85406.1| membrane bound hydrogenase, NiFe-hydrogenase small subunit [Thermococcus kodakarensis KOD1] Length = 193 Score = 109 bits (273), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 51/135 (37%), Positives = 79/135 (58%) Query: 44 DQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLT 103 + L WAR SL + F C +EM + RYD ERFG P +PR +D+ ++ G +T Sbjct: 18 EPLFRWARKKSLWIVAFCTGCGGIEMPPLATARYDFERFGIMPNPAPRMADLFLITGYVT 77 Query: 104 NKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTA 163 K + Y+ M +P+YV++ GSC GG Y SY+VV+ D+ +P+D+ + GC P Sbjct: 78 PKTLKRIIITYEMMQDPKYVLAHGSCPINGGVYWDSYNVVKQLDKYIPIDVAIAGCMPRP 137 Query: 164 EALIYGILLLQKKIR 178 EA++ GI+ + +KI Sbjct: 138 EAVMDGIMEIMRKIE 152 >gi|240102769|ref|YP_002959078.1| NADH dehydrogenase subunit B [Thermococcus gammatolerans EJ3] gi|239910323|gb|ACS33214.1| membrane bound oxidoreductase, MbxJ subunit (MbxJ) [Thermococcus gammatolerans EJ3] Length = 194 Score = 109 bits (273), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 51/135 (37%), Positives = 79/135 (58%) Query: 44 DQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLT 103 + L WAR SL + F C +EM + RYD ERFG P +PR +D+ ++ G +T Sbjct: 19 EPLFRWARKKSLWIVAFCTGCGGIEMPPLATARYDFERFGIMPNPAPRMADLFLITGYVT 78 Query: 104 NKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTA 163 K + Y+ M +P+YV++ GSC GG Y SY+VV+ D+ +P+D+ + GC P Sbjct: 79 PKTLKRIIITYEMMQDPKYVLAHGSCPINGGVYWDSYNVVKQLDKYIPIDVAIAGCMPRP 138 Query: 164 EALIYGILLLQKKIR 178 EA++ GI+ + +KI Sbjct: 139 EAVMDGIMEIMRKIE 153 >gi|238755287|ref|ZP_04616631.1| Formate hydrogenlyase subunit 7 [Yersinia ruckeri ATCC 29473] gi|238706521|gb|EEP98894.1| Formate hydrogenlyase subunit 7 [Yersinia ruckeri ATCC 29473] Length = 265 Score = 109 bits (273), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 53/121 (43%), Positives = 70/121 (57%), Gaps = 4/121 (3%) Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 G C +E+ A P +D ERFG SPR +D+++ G +T M R +D P+P Sbjct: 48 GCNGCEIEIFAAISPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRIPALRAWDSAPDP 107 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176 + IS G+C N GG +H Y V G D+IVPVD+Y+PGCPPT A IYG LL +K Sbjct: 108 KISISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATIYGFAMALGLLDQK 167 Query: 177 I 177 I Sbjct: 168 I 168 >gi|332157678|ref|YP_004422957.1| NADH dehydrogenase subunit B [Pyrococcus sp. NA2] gi|331033141|gb|AEC50953.1| NADH dehydrogenase subunit B [Pyrococcus sp. NA2] Length = 192 Score = 109 bits (272), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 52/135 (38%), Positives = 77/135 (57%) Query: 44 DQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLT 103 + L WAR SL + F C +EM RYD+ERFG P SPRQ D+ ++ G +T Sbjct: 8 EPLFNWARKKSLWIVAFCTGCGGIEMPPLMTARYDIERFGIMPDPSPRQYDLFLITGYVT 67 Query: 104 NKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTA 163 K + Y+ P+P+YV++ GSC GG Y SY+ ++ D+ +PVD+++ GC P Sbjct: 68 PKTLKRIIITYELSPDPKYVLAHGSCPLNGGIYWDSYNAIKHLDKYIPVDVFIAGCMPRP 127 Query: 164 EALIYGILLLQKKIR 178 EA++ GI L + I Sbjct: 128 EAVMDGIYKLMEMIE 142 >gi|238749929|ref|ZP_04611433.1| Formate hydrogenlyase subunit 7 [Yersinia rohdei ATCC 43380] gi|238711858|gb|EEQ04072.1| Formate hydrogenlyase subunit 7 [Yersinia rohdei ATCC 43380] Length = 236 Score = 109 bits (272), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 49/118 (41%), Positives = 72/118 (61%), Gaps = 4/118 (3%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E+ + P +D ERFG ASPR +D+++ G +T M + R Y+ P+P+ + Sbjct: 21 CEIEIFSSITPVFDTERFGIKVVASPRHADILLFTGAVTRAMRTPALRAYESAPDPKICV 80 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKKIR 178 S G+C GGG +H Y V G D IVP+D+Y+PGCPPT A IYG LL++K++ Sbjct: 81 SYGACGCGGGIFHDLYCVWGGSDTIVPIDVYIPGCPPTPAATIYGFAVALGLLEQKLK 138 >gi|238761067|ref|ZP_04622044.1| Formate hydrogenlyase subunit 7 [Yersinia kristensenii ATCC 33638] gi|238761320|ref|ZP_04622296.1| Formate hydrogenlyase subunit 7 [Yersinia kristensenii ATCC 33638] gi|238700294|gb|EEP93035.1| Formate hydrogenlyase subunit 7 [Yersinia kristensenii ATCC 33638] gi|238700547|gb|EEP93287.1| Formate hydrogenlyase subunit 7 [Yersinia kristensenii ATCC 33638] Length = 254 Score = 109 bits (272), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 49/118 (41%), Positives = 72/118 (61%), Gaps = 4/118 (3%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E+ + P +D ERFG ASPR +D+++ G +T M + R Y+ P+P+ + Sbjct: 39 CEIEIFSSITPVFDTERFGIKVVASPRHADILLFTGAVTRAMRTPALRAYESAPDPKICV 98 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKKIR 178 S G+C GGG +H Y V G D IVP+D+Y+PGCPPT A IYG LL++K++ Sbjct: 99 SYGACGCGGGIFHDLYCVWGGSDTIVPIDVYIPGCPPTPAATIYGFAVALGLLEQKLK 156 >gi|282856067|ref|ZP_06265353.1| hydrogenase-4 component I [Pyramidobacter piscolens W5455] gi|282586088|gb|EFB91370.1| hydrogenase-4 component I [Pyramidobacter piscolens W5455] Length = 156 Score = 109 bits (272), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 48/106 (45%), Positives = 72/106 (67%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E++ + PRYD+ER G +PR +DV++V G +T M LR++Y Q+P+P+ VI Sbjct: 27 CDIEIVASLTPRYDIERLGLKLTGTPRHADVLLVTGPVTRFMEPKLRQIYAQIPDPKVVI 86 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGI 170 ++G+CA G ++ SY++V DRIVPVD+YV GC EALI G+ Sbjct: 87 AVGNCATSGDVFYKSYNLVGPVDRIVPVDVYVHGCAIRPEALIEGV 132 >gi|238757224|ref|ZP_04618411.1| Formate hydrogenlyase subunit 7 [Yersinia aldovae ATCC 35236] gi|238704602|gb|EEP97132.1| Formate hydrogenlyase subunit 7 [Yersinia aldovae ATCC 35236] Length = 224 Score = 109 bits (272), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 49/118 (41%), Positives = 72/118 (61%), Gaps = 4/118 (3%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E+ + P +D ERFG ASPR +D+++ G +T M + R Y+ P+P+ + Sbjct: 9 CEIEIFSSITPVFDTERFGIKVVASPRHADILLFTGAVTRAMRTPALRAYESAPDPKICV 68 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKKIR 178 S G+C GGG +H Y V G D IVP+D+Y+PGCPPT A IYG LL++K++ Sbjct: 69 SYGACGCGGGIFHDLYCVWGGSDTIVPIDVYIPGCPPTPAATIYGFAVALGLLEQKLK 126 >gi|268324502|emb|CBH38090.1| F420H2-quinone oxidoreductase, subunit BCD fusion [uncultured archaeon] Length = 772 Score = 109 bits (272), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 57/129 (44%), Positives = 77/129 (59%), Gaps = 1/129 (0%) Query: 49 WARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108 W+ SL F +CC VE+ A YD ER G RQS+ +IV GT+T KMA Sbjct: 23 WSSKWSLWPCHFITSCCGVELAHAFASGYDGERLGTLNLGISRQSNYIIVEGTITRKMAR 82 Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168 AL+ V+ QMP+P++V +G+C GG + SY++ D IVPVD ++PGCP T EAL+ Sbjct: 83 ALQFVWGQMPDPKFVNVIGACGQRGGIFWNSYNITHPSD-IVPVDAFIPGCPITPEALLR 141 Query: 169 GILLLQKKI 177 G+ Q KI Sbjct: 142 GVRATQDKI 150 >gi|260597692|ref|YP_003210263.1| formate hydrogenlyase subunit 7 [Cronobacter turicensis z3032] gi|260216869|emb|CBA30407.1| Formate hydrogenlyase subunit 7 [Cronobacter turicensis z3032] Length = 254 Score = 109 bits (272), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 51/122 (41%), Positives = 71/122 (58%), Gaps = 4/122 (3%) Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 G C +E+ P +D ERFG SPR +D+++ G +T M S R ++ P+P Sbjct: 46 GCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWESAPDP 105 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176 + IS G+C N GG +H Y V G D+IVPVD+Y+PGCPPT A +YG LL++K Sbjct: 106 KICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQK 165 Query: 177 IR 178 I Sbjct: 166 IH 167 >gi|156934233|ref|YP_001438149.1| hypothetical protein ESA_02063 [Cronobacter sakazakii ATCC BAA-894] gi|156532487|gb|ABU77313.1| hypothetical protein ESA_02063 [Cronobacter sakazakii ATCC BAA-894] Length = 254 Score = 109 bits (272), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 51/122 (41%), Positives = 71/122 (58%), Gaps = 4/122 (3%) Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 G C +E+ P +D ERFG SPR +D+++ G +T M S R ++ P+P Sbjct: 46 GCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWESAPDP 105 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176 + IS G+C N GG +H Y V G D+IVPVD+Y+PGCPPT A +YG LL++K Sbjct: 106 KICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQK 165 Query: 177 IR 178 I Sbjct: 166 IH 167 >gi|238793444|ref|ZP_04637069.1| Formate hydrogenlyase subunit 7 [Yersinia intermedia ATCC 29909] gi|238727217|gb|EEQ18746.1| Formate hydrogenlyase subunit 7 [Yersinia intermedia ATCC 29909] Length = 262 Score = 109 bits (272), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 50/122 (40%), Positives = 73/122 (59%), Gaps = 4/122 (3%) Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 G C +E+ + P +D ERFG ASPR +D+++ G +T M + R Y+ P+P Sbjct: 43 GCNGCEIEIFSSITPLFDTERFGIKVVASPRHADILLFTGAVTRAMRAPALRAYESAPDP 102 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176 + +S G+C GGG +H Y V G D IVP+D+Y+PGCPPT A IYG LL++K Sbjct: 103 KICVSYGACGCGGGIFHDLYCVWGGSDTIVPIDVYIPGCPPTPAATIYGFAVALGLLEQK 162 Query: 177 IR 178 ++ Sbjct: 163 LK 164 >gi|261868405|ref|YP_003256327.1| hydrogenase-4 subunit I [Aggregatibacter actinomycetemcomitans D11S-1] gi|261413737|gb|ACX83108.1| hydrogenase-4 component I [Aggregatibacter actinomycetemcomitans D11S-1] Length = 258 Score = 109 bits (272), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 51/122 (41%), Positives = 71/122 (58%), Gaps = 4/122 (3%) Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 G C +E+ P +D ERFG ASPR +D+++ G +T M + R Y P+P Sbjct: 46 GCNGCEIEIFSTITPTFDAERFGIKVVASPRHADILLFTGAVTRAMRTPAMRAYQAAPDP 105 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176 + IS G+C GGG +H Y V G D+IVP+D+Y+PGCPPT A IYG LL +K Sbjct: 106 KICISYGACGCGGGIFHDLYCVWGGSDQIVPIDVYIPGCPPTPAATIYGFAMALGLLDQK 165 Query: 177 IR 178 ++ Sbjct: 166 LK 167 >gi|238784034|ref|ZP_04628049.1| Formate hydrogenlyase subunit 7 [Yersinia bercovieri ATCC 43970] gi|238715011|gb|EEQ07008.1| Formate hydrogenlyase subunit 7 [Yersinia bercovieri ATCC 43970] Length = 237 Score = 109 bits (272), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 50/118 (42%), Positives = 71/118 (60%), Gaps = 4/118 (3%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E+ + P +D ERFG ASPR +D+++ G +T M S R Y P+P+ I Sbjct: 22 CEIEIFSSITPLFDTERFGIKVVASPRHADILLFTGAVTRAMRSPALRAYQSAPDPKICI 81 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKKIR 178 S G+C GGG +H Y V G D IVP+D+Y+PGCPPT A +YG LL++K++ Sbjct: 82 SYGACGCGGGIFHDLYCVWGGSDTIVPIDVYIPGCPPTPAATLYGFAVALGLLEQKLK 139 >gi|239618414|ref|YP_002941736.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Kosmotoga olearia TBF 19.5.1] gi|239507245|gb|ACR80732.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Kosmotoga olearia TBF 19.5.1] Length = 179 Score = 108 bits (271), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 55/142 (38%), Positives = 83/142 (58%), Gaps = 6/142 (4%) Query: 41 TSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAG 100 ++ +++ R SL + + C A+E+ R+D+ERFG P A+PRQ+D++++ G Sbjct: 6 SAWNKVANMLRARSLWMLYYCTGCGAIELPPTMTARFDMERFGIGPMATPRQADILLITG 65 Query: 101 TLTNKMASALRRV---YDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 L+ K LRRV Y+QM P+YV+ GSC GG Y SY+ + D +PVD+Y+ Sbjct: 66 YLSTK---TLRRVIYTYEQMQAPKYVVGFGSCTINGGIYFDSYATINRLDLYLPVDLYLA 122 Query: 158 GCPPTAEALIYGILLLQKKIRR 179 GC P EA++ G L KKI R Sbjct: 123 GCMPRPEAIVNGFKELMKKIDR 144 >gi|294102253|ref|YP_003554111.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Aminobacterium colombiense DSM 12261] gi|293617233|gb|ADE57387.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Aminobacterium colombiense DSM 12261] Length = 153 Score = 108 bits (271), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 46/106 (43%), Positives = 70/106 (66%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E++ PRYD+ERFG +PR +DV++V G +T M L R+Y+Q+P+P+ V+ Sbjct: 27 CDIEIVATISPRYDIERFGMKLVGTPRHADVLVVTGPVTKYMKDRLLRIYNQIPDPKVVV 86 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGI 170 +G+C G ++ SYS+ D I+PVD+YV GCPP EA+I G+ Sbjct: 87 VVGNCGASGDVFYKSYSLEGPVDNIIPVDVYVHGCPPRPEAIIEGV 132 >gi|74313286|ref|YP_311705.1| hydrogenase activity [Shigella sonnei Ss046] gi|73856763|gb|AAZ89470.1| hydrogenase activity [Shigella sonnei Ss046] gi|323167106|gb|EFZ52824.1| formate hydrogenlyase subunit 7 [Shigella sonnei 53G] Length = 255 Score = 108 bits (271), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 52/125 (41%), Positives = 71/125 (56%), Gaps = 4/125 (3%) Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 G C +E+ P +D ERFG SPR +D+++ G +T M S R + P+P Sbjct: 47 GCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDP 106 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176 + IS G+C N GG +H Y V G D+IVPVD+Y+PGCPPT A +YG LL++K Sbjct: 107 KICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQK 166 Query: 177 IRRVG 181 I G Sbjct: 167 IHARG 171 >gi|312973071|ref|ZP_07787244.1| formate hydrogenlyase subunit 7 [Escherichia coli 1827-70] gi|310333013|gb|EFQ00227.1| formate hydrogenlyase subunit 7 [Escherichia coli 1827-70] gi|315615107|gb|EFU95744.1| formate hydrogenlyase subunit 7 [Escherichia coli 3431] Length = 239 Score = 108 bits (271), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 52/125 (41%), Positives = 71/125 (56%), Gaps = 4/125 (3%) Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 G C +E+ P +D ERFG SPR +D+++ G +T M S R + P+P Sbjct: 31 GCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDP 90 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176 + IS G+C N GG +H Y V G D+IVPVD+Y+PGCPPT A +YG LL++K Sbjct: 91 KICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQK 150 Query: 177 IRRVG 181 I G Sbjct: 151 IHARG 155 >gi|323180140|gb|EFZ65692.1| formate hydrogenlyase subunit 7 [Escherichia coli 1180] Length = 239 Score = 108 bits (271), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 52/125 (41%), Positives = 71/125 (56%), Gaps = 4/125 (3%) Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 G C +E+ P +D ERFG SPR +D+++ G +T M S R + P+P Sbjct: 31 GCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDP 90 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176 + IS G+C N GG +H Y V G D+IVPVD+Y+PGCPPT A +YG LL++K Sbjct: 91 KICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQK 150 Query: 177 IRRVG 181 I G Sbjct: 151 IHARG 155 >gi|320173428|gb|EFW48627.1| Formate hydrogenlyase subunit 7 [Shigella dysenteriae CDC 74-1112] Length = 255 Score = 108 bits (271), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 52/125 (41%), Positives = 71/125 (56%), Gaps = 4/125 (3%) Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 G C +E+ P +D ERFG SPR +D+++ G +T M S R + P+P Sbjct: 47 GCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDP 106 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176 + IS G+C N GG +H Y V G D+IVPVD+Y+PGCPPT A +YG LL++K Sbjct: 107 KICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQK 166 Query: 177 IRRVG 181 I G Sbjct: 167 IHARG 171 >gi|170765639|ref|ZP_02900450.1| formate hydrogenlyase, subunit G [Escherichia albertii TW07627] gi|170124785|gb|EDS93716.1| formate hydrogenlyase, subunit G [Escherichia albertii TW07627] Length = 255 Score = 108 bits (271), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 52/125 (41%), Positives = 71/125 (56%), Gaps = 4/125 (3%) Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 G C +E+ P +D ERFG SPR +D+++ G +T M S R + P+P Sbjct: 47 GCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDP 106 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176 + IS G+C N GG +H Y V G D+IVPVD+Y+PGCPPT A +YG LL++K Sbjct: 107 KICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQK 166 Query: 177 IRRVG 181 I G Sbjct: 167 IHARG 171 >gi|323139190|ref|ZP_08074246.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methylocystis sp. ATCC 49242] gi|322395573|gb|EFX98118.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methylocystis sp. ATCC 49242] Length = 166 Score = 108 bits (270), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 50/109 (45%), Positives = 71/109 (65%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E+ S P YDLERFG ASPR +DV++V G +T M AL+R YD P P++V+ Sbjct: 49 CELEIHALSNPYYDLERFGLRFVASPRHADVLMVTGPVTKNMCEALQRTYDATPNPKWVV 108 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLL 173 ++G CA GG + SY+ V ++VPVD++V GCPP AL+ G++ L Sbjct: 109 AVGDCAFDGGVFAGSYACVGAVTKVVPVDLHVRGCPPDPIALLKGLIAL 157 >gi|118103240|ref|XP_001234054.1| PREDICTED: hypothetical protein [Gallus gallus] Length = 187 Score = 108 bits (270), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 48/51 (94%), Positives = 50/51 (98%) Query: 129 CANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179 CANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQKKI+R Sbjct: 127 CANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKIKR 177 >gi|194432976|ref|ZP_03065259.1| formate hydrogenlyase, subunit G [Shigella dysenteriae 1012] gi|300941095|ref|ZP_07155607.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 21-1] gi|194418703|gb|EDX34789.1| formate hydrogenlyase, subunit G [Shigella dysenteriae 1012] gi|300454138|gb|EFK17631.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 21-1] gi|323966866|gb|EGB62295.1| NADH ubiquinone oxidoreductase [Escherichia coli M863] gi|323978671|gb|EGB73753.1| NADH ubiquinone oxidoreductase [Escherichia coli TW10509] gi|324111344|gb|EGC05326.1| NADH ubiquinone oxidoreductase [Escherichia fergusonii B253] gi|325496240|gb|EGC94099.1| formate hydrogenlyase, subunit G [Escherichia fergusonii ECD227] gi|327251442|gb|EGE63128.1| formate hydrogenlyase subunit 7 [Escherichia coli STEC_7v] gi|332087440|gb|EGI92568.1| formate hydrogenlyase subunit 7 [Shigella boydii 5216-82] gi|332088649|gb|EGI93762.1| formate hydrogenlyase subunit 7 [Shigella dysenteriae 155-74] Length = 255 Score = 108 bits (270), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 52/125 (41%), Positives = 71/125 (56%), Gaps = 4/125 (3%) Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 G C +E+ P +D ERFG SPR +D+++ G +T M S R + P+P Sbjct: 47 GCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDP 106 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176 + IS G+C N GG +H Y V G D+IVPVD+Y+PGCPPT A +YG LL++K Sbjct: 107 KICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQK 166 Query: 177 IRRVG 181 I G Sbjct: 167 IHARG 171 >gi|320186505|gb|EFW61233.1| Formate hydrogenlyase subunit 7 [Shigella flexneri CDC 796-83] Length = 255 Score = 108 bits (270), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 52/125 (41%), Positives = 71/125 (56%), Gaps = 4/125 (3%) Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 G C +E+ P +D ERFG SPR +D+++ G +T M S R + P+P Sbjct: 47 GCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDP 106 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176 + IS G+C N GG +H Y V G D+IVPVD+Y+PGCPPT A +YG LL++K Sbjct: 107 KICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQK 166 Query: 177 IRRVG 181 I G Sbjct: 167 IHARG 171 >gi|320180858|gb|EFW55781.1| Formate hydrogenlyase subunit 7 [Shigella boydii ATCC 9905] Length = 255 Score = 108 bits (270), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 52/125 (41%), Positives = 71/125 (56%), Gaps = 4/125 (3%) Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 G C +E+ P +D ERFG SPR +D+++ G +T M S R + P+P Sbjct: 47 GCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDP 106 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176 + IS G+C N GG +H Y V G D+IVPVD+Y+PGCPPT A +YG LL++K Sbjct: 107 KICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMVLGLLEQK 166 Query: 177 IRRVG 181 I G Sbjct: 167 IHARG 171 >gi|218547773|ref|YP_002381564.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit [Escherichia fergusonii ATCC 35469] gi|218355314|emb|CAQ87921.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit [Escherichia fergusonii ATCC 35469] Length = 255 Score = 108 bits (270), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 52/125 (41%), Positives = 71/125 (56%), Gaps = 4/125 (3%) Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 G C +E+ P +D ERFG SPR +D+++ G +T M S R + P+P Sbjct: 47 GCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDP 106 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176 + IS G+C N GG +H Y V G D+IVPVD+Y+PGCPPT A +YG LL++K Sbjct: 107 KICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQK 166 Query: 177 IRRVG 181 I G Sbjct: 167 IHARG 171 >gi|26249118|ref|NP_755158.1| formate hydrogenlyase subunit 7 [Escherichia coli CFT073] gi|91212079|ref|YP_542065.1| formate hydrogenlyase subunit 7 [Escherichia coli UTI89] gi|110642842|ref|YP_670572.1| formate hydrogenlyase-3 component G [Escherichia coli 536] gi|117624951|ref|YP_853939.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit [Escherichia coli APEC O1] gi|157157238|ref|YP_001464031.1| formate hydrogenlyase, subunit G [Escherichia coli E24377A] gi|170683663|ref|YP_001744868.1| formate hydrogenlyase, subunit G [Escherichia coli SMS-3-5] gi|191166819|ref|ZP_03028645.1| formate hydrogenlyase, subunit G [Escherichia coli B7A] gi|191171381|ref|ZP_03032930.1| formate hydrogenlyase, subunit G [Escherichia coli F11] gi|193065043|ref|ZP_03046118.1| formate hydrogenlyase, subunit G [Escherichia coli E22] gi|193069668|ref|ZP_03050620.1| formate hydrogenlyase, subunit G [Escherichia coli E110019] gi|194427855|ref|ZP_03060401.1| formate hydrogenlyase, subunit G [Escherichia coli B171] gi|209920158|ref|YP_002294242.1| formate hydrogenlyase subunit [Escherichia coli SE11] gi|218555263|ref|YP_002388176.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit [Escherichia coli IAI1] gi|218559709|ref|YP_002392622.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit [Escherichia coli S88] gi|218690843|ref|YP_002399055.1| hydrogenase 3 and formate hydrogenase complex subunit HycG [Escherichia coli ED1a] gi|218701211|ref|YP_002408840.1| hydrogenase 3 and formate hydrogenase complex subunit HycG [Escherichia coli IAI39] gi|218706213|ref|YP_002413732.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit [Escherichia coli UMN026] gi|227888257|ref|ZP_04006062.1| hydrogenase activity [Escherichia coli 83972] gi|237706658|ref|ZP_04537139.1| formate hydrogenlyase subunit 7 [Escherichia sp. 3_2_53FAA] gi|256019502|ref|ZP_05433367.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit [Shigella sp. D9] gi|260845362|ref|YP_003223140.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit [Escherichia coli O103:H2 str. 12009] gi|293406211|ref|ZP_06650137.1| formate hydrogenlyase subunit 7 [Escherichia coli FVEC1412] gi|293412077|ref|ZP_06654800.1| conserved hypothetical protein [Escherichia coli B354] gi|293449035|ref|ZP_06663456.1| hycG [Escherichia coli B088] gi|298381948|ref|ZP_06991545.1| formate hydrogenlyase subunit 7 [Escherichia coli FVEC1302] gi|300815877|ref|ZP_07096101.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 107-1] gi|300899958|ref|ZP_07118161.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 198-1] gi|300906778|ref|ZP_07124460.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 84-1] gi|300922237|ref|ZP_07138363.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 182-1] gi|300975045|ref|ZP_07172846.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 200-1] gi|300976821|ref|ZP_07173638.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 45-1] gi|301027129|ref|ZP_07190498.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 69-1] gi|301049524|ref|ZP_07196482.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 185-1] gi|301305390|ref|ZP_07211484.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 124-1] gi|301326246|ref|ZP_07219629.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 78-1] gi|306812403|ref|ZP_07446601.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit [Escherichia coli NC101] gi|309795179|ref|ZP_07689598.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 145-7] gi|331658827|ref|ZP_08359769.1| formate hydrogenlyase subunit 7 (FHL subunit 7) (Hydrogenase-3component G) [Escherichia coli TA206] gi|331684332|ref|ZP_08384924.1| formate hydrogenlyase subunit 7 (FHL subunit 7) (Hydrogenase-3component G) [Escherichia coli H299] gi|332280624|ref|ZP_08393037.1| hydrogenase 3 and formate hydrogenase complex [Shigella sp. D9] gi|26109525|gb|AAN81728.1|AE016765_130 Formate hydrogenlyase subunit 7 [Escherichia coli CFT073] gi|91073653|gb|ABE08534.1| formate hydrogenlyase subunit 7 [Escherichia coli UTI89] gi|110344434|gb|ABG70671.1| formate hydrogenlyase-3 component G [Escherichia coli 536] gi|115514075|gb|ABJ02150.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit [Escherichia coli APEC O1] gi|157079268|gb|ABV18976.1| formate hydrogenlyase, subunit G [Escherichia coli E24377A] gi|170521381|gb|ACB19559.1| formate hydrogenlyase, subunit G [Escherichia coli SMS-3-5] gi|190903190|gb|EDV62913.1| formate hydrogenlyase, subunit G [Escherichia coli B7A] gi|190908315|gb|EDV67905.1| formate hydrogenlyase, subunit G [Escherichia coli F11] gi|192927340|gb|EDV81959.1| formate hydrogenlyase, subunit G [Escherichia coli E22] gi|192957031|gb|EDV87482.1| formate hydrogenlyase, subunit G [Escherichia coli E110019] gi|194414088|gb|EDX30364.1| formate hydrogenlyase, subunit G [Escherichia coli B171] gi|209913417|dbj|BAG78491.1| formate hydrogenlyase subunit [Escherichia coli SE11] gi|218362031|emb|CAQ99638.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit [Escherichia coli IAI1] gi|218366478|emb|CAR04230.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit [Escherichia coli S88] gi|218371197|emb|CAR19028.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit [Escherichia coli IAI39] gi|218428407|emb|CAR09332.2| hydrogenase 3 and formate hydrogenase complex, HycG subunit [Escherichia coli ED1a] gi|218433310|emb|CAR14210.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit [Escherichia coli UMN026] gi|222034413|emb|CAP77155.1| Formate hydrogenlyase subunit 7 [Escherichia coli LF82] gi|226899698|gb|EEH85957.1| formate hydrogenlyase subunit 7 [Escherichia sp. 3_2_53FAA] gi|227834526|gb|EEJ44992.1| hydrogenase activity [Escherichia coli 83972] gi|257760509|dbj|BAI32006.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit [Escherichia coli O103:H2 str. 12009] gi|284922655|emb|CBG35743.1| formate hydrogenlyase subunit 7 [Escherichia coli 042] gi|291322125|gb|EFE61554.1| hycG [Escherichia coli B088] gi|291426217|gb|EFE99249.1| formate hydrogenlyase subunit 7 [Escherichia coli FVEC1412] gi|291468848|gb|EFF11339.1| conserved hypothetical protein [Escherichia coli B354] gi|294489961|gb|ADE88717.1| formate hydrogenlyase, subunit G [Escherichia coli IHE3034] gi|298277088|gb|EFI18604.1| formate hydrogenlyase subunit 7 [Escherichia coli FVEC1302] gi|300298755|gb|EFJ55140.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 185-1] gi|300308813|gb|EFJ63333.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 200-1] gi|300356467|gb|EFJ72337.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 198-1] gi|300395161|gb|EFJ78699.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 69-1] gi|300401472|gb|EFJ85010.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 84-1] gi|300410007|gb|EFJ93545.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 45-1] gi|300421367|gb|EFK04678.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 182-1] gi|300531806|gb|EFK52868.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 107-1] gi|300839310|gb|EFK67070.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 124-1] gi|300847091|gb|EFK74851.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 78-1] gi|305854441|gb|EFM54879.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit [Escherichia coli NC101] gi|307554694|gb|ADN47469.1| formate hydrogenlyase subunit 7 [Escherichia coli ABU 83972] gi|307625710|gb|ADN70014.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit [Escherichia coli UM146] gi|308121150|gb|EFO58412.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 145-7] gi|312947248|gb|ADR28075.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit [Escherichia coli O83:H1 str. NRG 857C] gi|315254501|gb|EFU34469.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 85-1] gi|315289284|gb|EFU48679.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 110-3] gi|315293724|gb|EFU53076.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 153-1] gi|315298793|gb|EFU58047.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 16-3] gi|320194857|gb|EFW69486.1| Formate hydrogenlyase subunit 7 [Escherichia coli WV_060327] gi|320202369|gb|EFW76939.1| Formate hydrogenlyase subunit 7 [Escherichia coli EC4100B] gi|323159853|gb|EFZ45824.1| formate hydrogenlyase subunit 7 [Escherichia coli E128010] gi|323183246|gb|EFZ68643.1| formate hydrogenlyase subunit 7 [Escherichia coli 1357] gi|323188867|gb|EFZ74152.1| formate hydrogenlyase subunit 7 [Escherichia coli RN587/1] gi|323946400|gb|EGB42428.1| NADH ubiquinone oxidoreductase [Escherichia coli H120] gi|323951062|gb|EGB46938.1| NADH ubiquinone oxidoreductase [Escherichia coli H252] gi|323957069|gb|EGB52794.1| NADH ubiquinone oxidoreductase [Escherichia coli H263] gi|324005681|gb|EGB74900.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 57-2] gi|324013674|gb|EGB82893.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 60-1] gi|324017032|gb|EGB86251.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 117-3] gi|324119969|gb|EGC13847.1| NADH ubiquinone oxidoreductase [Escherichia coli E1167] gi|331053409|gb|EGI25438.1| formate hydrogenlyase subunit 7 (FHL subunit 7) (Hydrogenase-3component G) [Escherichia coli TA206] gi|331077947|gb|EGI49153.1| formate hydrogenlyase subunit 7 (FHL subunit 7) (Hydrogenase-3component G) [Escherichia coli H299] gi|332102976|gb|EGJ06322.1| hydrogenase 3 and formate hydrogenase complex [Shigella sp. D9] Length = 255 Score = 108 bits (270), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 52/125 (41%), Positives = 71/125 (56%), Gaps = 4/125 (3%) Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 G C +E+ P +D ERFG SPR +D+++ G +T M S R + P+P Sbjct: 47 GCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDP 106 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176 + IS G+C N GG +H Y V G D+IVPVD+Y+PGCPPT A +YG LL++K Sbjct: 107 KICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQK 166 Query: 177 IRRVG 181 I G Sbjct: 167 IHARG 171 >gi|293392055|ref|ZP_06636389.1| hydrogenase-4 component I [Aggregatibacter actinomycetemcomitans D7S-1] gi|290952589|gb|EFE02708.1| hydrogenase-4 component I [Aggregatibacter actinomycetemcomitans D7S-1] Length = 258 Score = 108 bits (270), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 51/122 (41%), Positives = 71/122 (58%), Gaps = 4/122 (3%) Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 G C +E+ P +D ERFG ASPR +D+++ G +T M + R Y P+P Sbjct: 46 GCNGCEIEIFSTITPTFDAERFGIKVVASPRHADILLFTGAVTRAMRTPAIRAYQAAPDP 105 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176 + IS G+C GGG +H Y V G D+IVP+D+Y+PGCPPT A IYG LL +K Sbjct: 106 KICISYGACGCGGGIFHDLYCVWGGSDQIVPIDVYIPGCPPTPAATIYGFAMALGLLDQK 165 Query: 177 IR 178 ++ Sbjct: 166 LK 167 >gi|213610076|ref|ZP_03369902.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 175 Score = 108 bits (270), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 50/118 (42%), Positives = 69/118 (58%), Gaps = 4/118 (3%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E+ P +D ERFG SPR +D+++ G +T M S R + P+P+ I Sbjct: 51 CEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICI 110 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKKIR 178 S G+C N GG +H Y V G D+IVPVD+Y+PGCPPT A +YG LL++KI Sbjct: 111 SYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIH 168 >gi|317493922|ref|ZP_07952339.1| NADH ubiquinone oxidoreductase [Enterobacteriaceae bacterium 9_2_54FAA] gi|316918249|gb|EFV39591.1| NADH ubiquinone oxidoreductase [Enterobacteriaceae bacterium 9_2_54FAA] Length = 274 Score = 108 bits (270), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 52/122 (42%), Positives = 71/122 (58%), Gaps = 4/122 (3%) Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 G C +E+ A P +D ERFG SPR +D+++ G +T M R Y+ P+P Sbjct: 58 GCNGCEIEIFSALTPLFDTERFGIKVVPSPRHADILLFTGAVTRSMRIPAIRAYESAPDP 117 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176 + VIS G+C GG +H Y V G D+IVPVD+Y+PGCPPT A IYG LL +K Sbjct: 118 KIVISYGACGCSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATIYGFAMALGLLDQK 177 Query: 177 IR 178 ++ Sbjct: 178 LK 179 >gi|16130626|ref|NP_417199.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit [Escherichia coli str. K-12 substr. MG1655] gi|89109506|ref|AP_003286.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit [Escherichia coli str. K-12 substr. W3110] gi|157162165|ref|YP_001459483.1| formate hydrogenlyase, subunit G [Escherichia coli HS] gi|170019035|ref|YP_001723989.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Escherichia coli ATCC 8739] gi|170082295|ref|YP_001731615.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit [Escherichia coli str. K-12 substr. DH10B] gi|188491683|ref|ZP_02998953.1| NADH ubiquinone oxidoreductase [Escherichia coli 53638] gi|238901856|ref|YP_002927652.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit [Escherichia coli BW2952] gi|254037758|ref|ZP_04871816.1| hydrogenase 3 and formate hydrogenase complex [Escherichia sp. 1_1_43] gi|256024774|ref|ZP_05438639.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit [Escherichia sp. 4_1_40B] gi|300947003|ref|ZP_07161229.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 116-1] gi|300954959|ref|ZP_07167371.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 175-1] gi|301027398|ref|ZP_07190737.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 196-1] gi|301645301|ref|ZP_07245251.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 146-1] gi|307139406|ref|ZP_07498762.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit [Escherichia coli H736] gi|331643403|ref|ZP_08344534.1| formate hydrogenlyase subunit 7 (FHL subunit 7) (Hydrogenase-3component G) [Escherichia coli H736] gi|2506958|sp|P16433|HYCG_ECOLI RecName: Full=Formate hydrogenlyase subunit 7; Short=FHL subunit 7; AltName: Full=Hydrogenase-3 component G gi|882612|gb|AAA69229.1| formate hydrogenlyase subunit 7 [Escherichia coli str. K-12 substr. MG1655] gi|1789074|gb|AAC75761.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit [Escherichia coli str. K-12 substr. MG1655] gi|85675540|dbj|BAE76796.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit [Escherichia coli str. K12 substr. W3110] gi|157067845|gb|ABV07100.1| formate hydrogenlyase, subunit G [Escherichia coli HS] gi|169753963|gb|ACA76662.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Escherichia coli ATCC 8739] gi|169890130|gb|ACB03837.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit [Escherichia coli str. K-12 substr. DH10B] gi|188486882|gb|EDU61985.1| NADH ubiquinone oxidoreductase [Escherichia coli 53638] gi|226839382|gb|EEH71403.1| hydrogenase 3 and formate hydrogenase complex [Escherichia sp. 1_1_43] gi|238861454|gb|ACR63452.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit [Escherichia coli BW2952] gi|260448231|gb|ACX38653.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Escherichia coli DH1] gi|299879312|gb|EFI87523.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 196-1] gi|300318094|gb|EFJ67878.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 175-1] gi|300453390|gb|EFK17010.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 116-1] gi|301076419|gb|EFK91225.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 146-1] gi|309703078|emb|CBJ02410.1| formate hydrogenlyase subunit 7 [Escherichia coli ETEC H10407] gi|315137326|dbj|BAJ44485.1| hydrogenase 3 and formate hydrogenase complex [Escherichia coli DH1] gi|323172993|gb|EFZ58624.1| formate hydrogenlyase subunit 7 [Escherichia coli LT-68] gi|323935725|gb|EGB32039.1| NADH ubiquinone oxidoreductase [Escherichia coli E1520] gi|331036874|gb|EGI09098.1| formate hydrogenlyase subunit 7 (FHL subunit 7) (Hydrogenase-3component G) [Escherichia coli H736] gi|332344600|gb|AEE57934.1| formate hydrogenlyase subunit 7 [Escherichia coli UMNK88] Length = 255 Score = 108 bits (270), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 52/125 (41%), Positives = 71/125 (56%), Gaps = 4/125 (3%) Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 G C +E+ P +D ERFG SPR +D+++ G +T M S R + P+P Sbjct: 47 GCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDP 106 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176 + IS G+C N GG +H Y V G D+IVPVD+Y+PGCPPT A +YG LL++K Sbjct: 107 KICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQK 166 Query: 177 IRRVG 181 I G Sbjct: 167 IHARG 171 >gi|312965023|ref|ZP_07779263.1| formate hydrogenlyase subunit 7 [Escherichia coli 2362-75] gi|331648437|ref|ZP_08349525.1| formate hydrogenlyase subunit 7 (FHL subunit 7) (Hydrogenase-3component G) [Escherichia coli M605] gi|281179722|dbj|BAI56052.1| formate hydrogenlyase subunit [Escherichia coli SE15] gi|312290579|gb|EFR18459.1| formate hydrogenlyase subunit 7 [Escherichia coli 2362-75] gi|331042184|gb|EGI14326.1| formate hydrogenlyase subunit 7 (FHL subunit 7) (Hydrogenase-3component G) [Escherichia coli M605] Length = 255 Score = 108 bits (270), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 52/125 (41%), Positives = 71/125 (56%), Gaps = 4/125 (3%) Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 G C +E+ P +D ERFG SPR +D+++ G +T M S R + P+P Sbjct: 47 GCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDP 106 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176 + IS G+C N GG +H Y V G D+IVPVD+Y+PGCPPT A +YG LL++K Sbjct: 107 KICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQK 166 Query: 177 IRRVG 181 I G Sbjct: 167 IHARG 171 >gi|215488035|ref|YP_002330466.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit [Escherichia coli O127:H6 str. E2348/69] gi|215266107|emb|CAS10532.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit [Escherichia coli O127:H6 str. E2348/69] Length = 255 Score = 108 bits (270), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 52/125 (41%), Positives = 71/125 (56%), Gaps = 4/125 (3%) Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 G C +E+ P +D ERFG SPR +D+++ G +T M S R + P+P Sbjct: 47 GCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDP 106 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176 + IS G+C N GG +H Y V G D+IVPVD+Y+PGCPPT A +YG LL++K Sbjct: 107 KICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQK 166 Query: 177 IRRVG 181 I G Sbjct: 167 IHARG 171 >gi|307312858|ref|ZP_07592488.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Escherichia coli W] gi|306907293|gb|EFN37799.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Escherichia coli W] gi|315061995|gb|ADT76322.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit [Escherichia coli W] gi|323377422|gb|ADX49690.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Escherichia coli KO11] Length = 255 Score = 108 bits (270), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 52/125 (41%), Positives = 71/125 (56%), Gaps = 4/125 (3%) Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 G C +E+ P +D ERFG SPR +D+++ G +T M S R + P+P Sbjct: 47 GCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDP 106 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176 + IS G+C N GG +H Y V G D+IVPVD+Y+PGCPPT A +YG LL++K Sbjct: 107 KICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQK 166 Query: 177 IRRVG 181 I G Sbjct: 167 IHARG 171 >gi|15803236|ref|NP_289268.1| hydrogenase activity [Escherichia coli O157:H7 EDL933] gi|15832829|ref|NP_311602.1| formate hydrogenlyase subunit-7 component G [Escherichia coli O157:H7 str. Sakai] gi|168749956|ref|ZP_02774978.1| formate hydrogenlyase, subunit G [Escherichia coli O157:H7 str. EC4113] gi|168755464|ref|ZP_02780471.1| formate hydrogenlyase, subunit G [Escherichia coli O157:H7 str. EC4401] gi|168762882|ref|ZP_02787889.1| formate hydrogenlyase, subunit G [Escherichia coli O157:H7 str. EC4501] gi|168768810|ref|ZP_02793817.1| formate hydrogenlyase, subunit G [Escherichia coli O157:H7 str. EC4486] gi|168774749|ref|ZP_02799756.1| formate hydrogenlyase, subunit G [Escherichia coli O157:H7 str. EC4196] gi|168778701|ref|ZP_02803708.1| formate hydrogenlyase, subunit G [Escherichia coli O157:H7 str. EC4076] gi|168787974|ref|ZP_02812981.1| formate hydrogenlyase, subunit G [Escherichia coli O157:H7 str. EC869] gi|168800200|ref|ZP_02825207.1| formate hydrogenlyase, subunit G [Escherichia coli O157:H7 str. EC508] gi|194438988|ref|ZP_03071072.1| formate hydrogenlyase, subunit G [Escherichia coli 101-1] gi|195938469|ref|ZP_03083851.1| formate hydrogenlyase subunit-7 component G [Escherichia coli O157:H7 str. EC4024] gi|208806906|ref|ZP_03249243.1| formate hydrogenlyase, subunit G [Escherichia coli O157:H7 str. EC4206] gi|208812606|ref|ZP_03253935.1| formate hydrogenlyase, subunit G [Escherichia coli O157:H7 str. EC4045] gi|208818509|ref|ZP_03258829.1| formate hydrogenlyase, subunit G [Escherichia coli O157:H7 str. EC4042] gi|209396735|ref|YP_002272182.1| formate hydrogenlyase, subunit G [Escherichia coli O157:H7 str. EC4115] gi|217327730|ref|ZP_03443813.1| formate hydrogenlyase, subunit G [Escherichia coli O157:H7 str. TW14588] gi|253772426|ref|YP_003035257.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254162650|ref|YP_003045758.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit [Escherichia coli B str. REL606] gi|254794659|ref|YP_003079496.1| hydrogenase 3 and formate hydrogenase complex subunit HycG [Escherichia coli O157:H7 str. TW14359] gi|260856826|ref|YP_003230717.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit [Escherichia coli O26:H11 str. 11368] gi|260869394|ref|YP_003235796.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit [Escherichia coli O111:H- str. 11128] gi|261226013|ref|ZP_05940294.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit [Escherichia coli O157:H7 str. FRIK2000] gi|261256729|ref|ZP_05949262.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit [Escherichia coli O157:H7 str. FRIK966] gi|291284046|ref|YP_003500864.1| Formate hydrogenlyase, subunit G [Escherichia coli O55:H7 str. CB9615] gi|293415969|ref|ZP_06658609.1| formate hydrogenlyase subunit 7 [Escherichia coli B185] gi|297519859|ref|ZP_06938245.1| Formate hydrogenlyase, subunit G [Escherichia coli OP50] gi|300919245|ref|ZP_07135768.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 115-1] gi|300930577|ref|ZP_07145969.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 187-1] gi|331654196|ref|ZP_08355196.1| formate hydrogenlyase subunit 7 (FHL subunit 7) (Hydrogenase-3component G) [Escherichia coli M718] gi|331674227|ref|ZP_08374987.1| formate hydrogenlyase subunit 7 (FHL subunit 7) (Hydrogenase-3component G) [Escherichia coli TA280] gi|12517167|gb|AAG57826.1|AE005500_5 hydrogenase activity [Escherichia coli O157:H7 str. EDL933] gi|13363046|dbj|BAB36998.1| formate hydrogenlyase subunit-7 component G [Escherichia coli O157:H7 str. Sakai] gi|187769518|gb|EDU33362.1| formate hydrogenlyase, subunit G [Escherichia coli O157:H7 str. EC4196] gi|188015810|gb|EDU53932.1| formate hydrogenlyase, subunit G [Escherichia coli O157:H7 str. EC4113] gi|189003614|gb|EDU72600.1| formate hydrogenlyase, subunit G [Escherichia coli O157:H7 str. EC4076] gi|189357334|gb|EDU75753.1| formate hydrogenlyase, subunit G [Escherichia coli O157:H7 str. EC4401] gi|189362033|gb|EDU80452.1| formate hydrogenlyase, subunit G [Escherichia coli O157:H7 str. EC4486] gi|189366866|gb|EDU85282.1| formate hydrogenlyase, subunit G [Escherichia coli O157:H7 str. EC4501] gi|189372104|gb|EDU90520.1| formate hydrogenlyase, subunit G [Escherichia coli O157:H7 str. EC869] gi|189377479|gb|EDU95895.1| formate hydrogenlyase, subunit G [Escherichia coli O157:H7 str. EC508] gi|194422109|gb|EDX38112.1| formate hydrogenlyase, subunit G [Escherichia coli 101-1] gi|208726707|gb|EDZ76308.1| formate hydrogenlyase, subunit G [Escherichia coli O157:H7 str. EC4206] gi|208733883|gb|EDZ82570.1| formate hydrogenlyase, subunit G [Escherichia coli O157:H7 str. EC4045] gi|208738632|gb|EDZ86314.1| formate hydrogenlyase, subunit G [Escherichia coli O157:H7 str. EC4042] gi|209158135|gb|ACI35568.1| formate hydrogenlyase, subunit G [Escherichia coli O157:H7 str. EC4115] gi|209761908|gb|ACI79266.1| formate hydrogenlyase subunit-7 component G [Escherichia coli] gi|209761910|gb|ACI79267.1| formate hydrogenlyase subunit-7 component G [Escherichia coli] gi|209761912|gb|ACI79268.1| formate hydrogenlyase subunit-7 component G [Escherichia coli] gi|209761914|gb|ACI79269.1| formate hydrogenlyase subunit-7 component G [Escherichia coli] gi|209761916|gb|ACI79270.1| formate hydrogenlyase subunit-7 component G [Escherichia coli] gi|217320097|gb|EEC28522.1| formate hydrogenlyase, subunit G [Escherichia coli O157:H7 str. TW14588] gi|242378276|emb|CAQ33051.1| hydrogenase 3 and formate hydrogenlyase complex, HycG subunit, subunit of hydrogenase 3 and formate hydrogenlyase complex [Escherichia coli BL21(DE3)] gi|253323470|gb|ACT28072.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253974551|gb|ACT40222.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit [Escherichia coli B str. REL606] gi|253978718|gb|ACT44388.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit [Escherichia coli BL21(DE3)] gi|254594059|gb|ACT73420.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit [Escherichia coli O157:H7 str. TW14359] gi|257755475|dbj|BAI26977.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit [Escherichia coli O26:H11 str. 11368] gi|257765750|dbj|BAI37245.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit [Escherichia coli O111:H- str. 11128] gi|290763919|gb|ADD57880.1| Formate hydrogenlyase, subunit G [Escherichia coli O55:H7 str. CB9615] gi|291432158|gb|EFF05140.1| formate hydrogenlyase subunit 7 [Escherichia coli B185] gi|300413690|gb|EFJ97000.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 115-1] gi|300461519|gb|EFK25012.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 187-1] gi|320189051|gb|EFW63710.1| Formate hydrogenlyase subunit 7 [Escherichia coli O157:H7 str. EC1212] gi|320640362|gb|EFX09901.1| Formate hydrogenlyase, subunit G [Escherichia coli O157:H7 str. G5101] gi|320645909|gb|EFX14890.1| Formate hydrogenlyase, subunit G [Escherichia coli O157:H- str. 493-89] gi|320651209|gb|EFX19644.1| Formate hydrogenlyase, subunit G [Escherichia coli O157:H- str. H 2687] gi|320656759|gb|EFX24647.1| Formate hydrogenlyase, subunit G [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320662302|gb|EFX29699.1| Formate hydrogenlyase, subunit G [Escherichia coli O55:H7 str. USDA 5905] gi|320667353|gb|EFX34311.1| Formate hydrogenlyase, subunit G [Escherichia coli O157:H7 str. LSU-61] gi|323154935|gb|EFZ41127.1| formate hydrogenlyase subunit 7 [Escherichia coli EPECa14] gi|323941450|gb|EGB37633.1| NADH ubiquinone oxidoreductase [Escherichia coli E482] gi|323960621|gb|EGB56247.1| NADH ubiquinone oxidoreductase [Escherichia coli H489] gi|323971552|gb|EGB66785.1| NADH ubiquinone oxidoreductase [Escherichia coli TA007] gi|326339209|gb|EGD63024.1| Formate hydrogenlyase subunit 7 [Escherichia coli O157:H7 str. 1044] gi|326342908|gb|EGD66676.1| Formate hydrogenlyase subunit 7 [Escherichia coli O157:H7 str. 1125] gi|331047578|gb|EGI19655.1| formate hydrogenlyase subunit 7 (FHL subunit 7) (Hydrogenase-3component G) [Escherichia coli M718] gi|331068321|gb|EGI39716.1| formate hydrogenlyase subunit 7 (FHL subunit 7) (Hydrogenase-3component G) [Escherichia coli TA280] Length = 255 Score = 108 bits (270), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 52/125 (41%), Positives = 71/125 (56%), Gaps = 4/125 (3%) Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 G C +E+ P +D ERFG SPR +D+++ G +T M S R + P+P Sbjct: 47 GCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDP 106 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176 + IS G+C N GG +H Y V G D+IVPVD+Y+PGCPPT A +YG LL++K Sbjct: 107 KICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQK 166 Query: 177 IRRVG 181 I G Sbjct: 167 IHARG 171 >gi|213583852|ref|ZP_03365678.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 174 Score = 108 bits (270), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 50/118 (42%), Positives = 69/118 (58%), Gaps = 4/118 (3%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E+ P +D ERFG SPR +D+++ G +T M S R + P+P+ I Sbjct: 51 CEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICI 110 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKKIR 178 S G+C N GG +H Y V G D+IVPVD+Y+PGCPPT A +YG LL++KI Sbjct: 111 SYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIH 168 >gi|110806654|ref|YP_690174.1| hydrogenase activity [Shigella flexneri 5 str. 8401] gi|110616202|gb|ABF04869.1| hydrogenase activity [Shigella flexneri 5 str. 8401] Length = 255 Score = 108 bits (270), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 52/125 (41%), Positives = 71/125 (56%), Gaps = 4/125 (3%) Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 G C +E+ P +D ERFG SPR +D+++ G +T M S R + P+P Sbjct: 47 GCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDP 106 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176 + IS G+C N GG +H Y V G D+IVPVD+Y+PGCPPT A +YG LL++K Sbjct: 107 KICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQK 166 Query: 177 IRRVG 181 I G Sbjct: 167 IHARG 171 >gi|146312833|ref|YP_001177907.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Enterobacter sp. 638] gi|145319709|gb|ABP61856.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Enterobacter sp. 638] Length = 255 Score = 108 bits (270), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 51/122 (41%), Positives = 70/122 (57%), Gaps = 4/122 (3%) Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 G C +E+ P +D ERFG SPR +D+++ G +T M S R + P+P Sbjct: 47 GCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAMTRAMRSPALRAWQSAPDP 106 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176 + IS G+C N GG +H Y V G D+IVPVD+Y+PGCPPT A +YG LL++K Sbjct: 107 KICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQK 166 Query: 177 IR 178 I Sbjct: 167 IH 168 >gi|307265664|ref|ZP_07547217.1| NADH dehydrogenase (quinone) [Thermoanaerobacter wiegelii Rt8.B1] gi|306919308|gb|EFN49529.1| NADH dehydrogenase (quinone) [Thermoanaerobacter wiegelii Rt8.B1] Length = 155 Score = 108 bits (270), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 49/124 (39%), Positives = 83/124 (66%), Gaps = 4/124 (3%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E++ P YD+ERFG +P+ +D+++V GT+ +K L+ +YDQMPEP+ V+ Sbjct: 28 CDIEILACMTPLYDMERFGMVNVGNPKHADILVVTGTVNHKNKEVLKNIYDQMPEPKVVV 87 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKKIRRV 180 ++G CA GG + +Y+V+ G D+++PVD+YVPGCP EA+I G+ +L++K ++ Sbjct: 88 AVGVCAATGGIFREAYNVLGGIDKVIPVDVYVPGCPAKPEAIIDGLYKAAEILKEKYEKM 147 Query: 181 GNVK 184 G + Sbjct: 148 GKAE 151 >gi|23015497|ref|ZP_00055271.1| COG3260: Ni,Fe-hydrogenase III small subunit [Magnetospirillum magnetotacticum MS-1] Length = 180 Score = 108 bits (269), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 47/98 (47%), Positives = 66/98 (67%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E+ + P YDLERFG ASPR +DV++V G +T M ALRR + PEPR+++ Sbjct: 63 CELEIHAVNHPIYDLERFGIRFVASPRHADVLLVTGPVTRNMEEALRRTVEATPEPRWIV 122 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162 +MG C GG + SY+VV G +VPVD+++PGCPP+ Sbjct: 123 AMGDCGKDGGCFAGSYAVVGGVSDVVPVDLHIPGCPPS 160 >gi|149280569|ref|ZP_01886685.1| NADH dehydrogenase I, chain B [Pedobacter sp. BAL39] gi|149228684|gb|EDM34087.1| NADH dehydrogenase I, chain B [Pedobacter sp. BAL39] Length = 128 Score = 108 bits (269), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 51/104 (49%), Positives = 76/104 (73%), Gaps = 2/104 (1%) Query: 76 RYDLERFGFAPRA-SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGG 134 YD RFG + SPRQ+D+++V GT+ KM+ L++VY QM EPR+VI++G+CA+ GG Sbjct: 4 HYDFGRFGSERLSFSPRQADLLMVMGTIAKKMSPVLKQVYLQMAEPRWVIAVGACASSGG 63 Query: 135 YYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 + +YSV++G D I+PVD+YVPGCPP EA++ G +Q+ +R Sbjct: 64 IFD-TYSVLQGIDEIIPVDVYVPGCPPRPEAILDGFGKIQELVR 106 >gi|300820494|ref|ZP_07100645.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 119-7] gi|331669452|ref|ZP_08370298.1| formate hydrogenlyase subunit 7 (FHL subunit 7) (Hydrogenase-3component G) [Escherichia coli TA271] gi|331678693|ref|ZP_08379367.1| formate hydrogenlyase subunit 7 (FHL subunit 7) (Hydrogenase-3component G) [Escherichia coli H591] gi|300526758|gb|EFK47827.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 119-7] gi|331063120|gb|EGI35033.1| formate hydrogenlyase subunit 7 (FHL subunit 7) (Hydrogenase-3component G) [Escherichia coli TA271] gi|331073523|gb|EGI44844.1| formate hydrogenlyase subunit 7 (FHL subunit 7) (Hydrogenase-3component G) [Escherichia coli H591] Length = 255 Score = 108 bits (269), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 51/125 (40%), Positives = 71/125 (56%), Gaps = 4/125 (3%) Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 G C +E+ P +D ERFG SPR +D+++ G +T M S R + P+P Sbjct: 47 GCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDP 106 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176 + IS G+C N GG +H Y V G D+I+PVD+Y+PGCPPT A +YG LL++K Sbjct: 107 KICISYGACGNSGGIFHDLYCVWGGTDKIIPVDVYIPGCPPTPAATLYGFAMALGLLEQK 166 Query: 177 IRRVG 181 I G Sbjct: 167 IHARG 171 >gi|118581190|ref|YP_902440.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Pelobacter propionicus DSM 2379] gi|118581198|ref|YP_902448.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Pelobacter propionicus DSM 2379] gi|118503900|gb|ABL00383.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Pelobacter propionicus DSM 2379] gi|118503908|gb|ABL00391.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Pelobacter propionicus DSM 2379] Length = 179 Score = 108 bits (269), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 49/110 (44%), Positives = 69/110 (62%) Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 G C +E++ P YD+ERFG SPR +DVM+ G AL+R Y MP P Sbjct: 23 GCNGCDIEVLNVLTPYYDVERFGIKLVGSPRHADVMLCQGPAMRSTGKALQRAYAAMPGP 82 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGI 170 + V ++GSCA GGG +H SY+V ++++PV+ YVPGCPP EA+I+G+ Sbjct: 83 KLVFAIGSCACGGGIWHDSYAVHGPVEKLIPVNYYVPGCPPRPEAIIWGV 132 >gi|157148257|ref|YP_001455576.1| hypothetical protein CKO_04074 [Citrobacter koseri ATCC BAA-895] gi|157085462|gb|ABV15140.1| hypothetical protein CKO_04074 [Citrobacter koseri ATCC BAA-895] Length = 255 Score = 108 bits (269), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 51/122 (41%), Positives = 70/122 (57%), Gaps = 4/122 (3%) Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 G C +E+ P +D ERFG SPR +D+++ G +T M S R + P+P Sbjct: 47 GCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDP 106 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176 + IS G+C N GG +H Y V G D+IVPVD+Y+PGCPPT A +YG LL++K Sbjct: 107 KICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQK 166 Query: 177 IR 178 I Sbjct: 167 IH 168 >gi|289522403|ref|ZP_06439257.1| carbon monoxide-induced hydrogenase, CooL subunit [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289504239|gb|EFD25403.1| carbon monoxide-induced hydrogenase, CooL subunit [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 160 Score = 108 bits (269), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 48/106 (45%), Positives = 69/106 (65%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E++ PRYD+ERFG +PR +D ++V G +T M LRRVY QMP P+ VI Sbjct: 30 CDIEIVALLTPRYDIERFGMKLVGTPRHADALLVTGPVTKYMTDRLRRVYAQMPNPKVVI 89 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGI 170 +G+C G ++ SY++ D+I+PVD+YV GCPP EA+I G+ Sbjct: 90 VVGNCGASGDVFYKSYNLDGPVDQILPVDVYVHGCPPRPEAIIDGV 135 >gi|307299704|ref|ZP_07579498.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Thermotogales bacterium mesG1.Ag.4.2] gi|306914631|gb|EFN45023.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Thermotogales bacterium mesG1.Ag.4.2] Length = 179 Score = 108 bits (269), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 53/139 (38%), Positives = 81/139 (58%), Gaps = 6/139 (4%) Query: 44 DQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLT 103 +++ R+ SL + + C A+E+ R+D+ER G P A+PRQ+D+M++ G L+ Sbjct: 9 EKVANMLRSRSLWMLYYCTGCGAIELPPTMTSRFDMERLGIGPMATPRQADIMLITGYLS 68 Query: 104 NKMASALRRV---YDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCP 160 K LRRV Y+QM P+Y++ GSC GG Y+ SY+ + D VPVD+Y+ GC Sbjct: 69 TK---TLRRVIYSYEQMQSPKYIVGFGSCTLNGGIYYDSYATINKLDLYVPVDLYLAGCM 125 Query: 161 PTAEALIYGILLLQKKIRR 179 P EA++ G L KI + Sbjct: 126 PRPEAIVSGFTALMSKIDK 144 >gi|56414799|ref|YP_151874.1| formate hydrogenlyase subunit 7 [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197363727|ref|YP_002143364.1| formate hydrogenlyase subunit 7 [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|56129056|gb|AAV78562.1| formate hydrogenlyase subunit 7 [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197095204|emb|CAR60755.1| formate hydrogenlyase subunit 7 [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 255 Score = 108 bits (269), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 51/122 (41%), Positives = 70/122 (57%), Gaps = 4/122 (3%) Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 G C +E+ P +D ERFG SPR +D+++ G +T M S R + P+P Sbjct: 47 GCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDP 106 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176 + IS G+C N GG +H Y V G D+IVPVD+Y+PGCPPT A +YG LL++K Sbjct: 107 KICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQK 166 Query: 177 IR 178 I Sbjct: 167 IH 168 >gi|41686|emb|CAA35552.1| hycG [Escherichia coli] gi|1093500|prf||2104213G hycG gene Length = 255 Score = 108 bits (269), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 52/125 (41%), Positives = 71/125 (56%), Gaps = 4/125 (3%) Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 G C +E+ P +D ERFG SPR +D+++ G +T M S R + P+P Sbjct: 47 GCNGCEIEIFGTLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDP 106 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176 + IS G+C N GG +H Y V G D+IVPVD+Y+PGCPPT A +YG LL++K Sbjct: 107 KICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQK 166 Query: 177 IRRVG 181 I G Sbjct: 167 IHARG 171 >gi|198244148|ref|YP_002216819.1| formate hydrogenlyase subunit G [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|197938664|gb|ACH75997.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|326624578|gb|EGE30923.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 255 Score = 108 bits (269), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 51/122 (41%), Positives = 70/122 (57%), Gaps = 4/122 (3%) Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 G C +E+ P +D ERFG SPR +D+++ G +T M S R + P+P Sbjct: 47 GCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDP 106 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176 + IS G+C N GG +H Y V G D+IVPVD+Y+PGCPPT A +YG LL++K Sbjct: 107 KICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQK 166 Query: 177 IR 178 I Sbjct: 167 IH 168 >gi|254171859|ref|ZP_04878535.1| NADH dehydrogenase beta subunit [Thermococcus sp. AM4] gi|214033755|gb|EEB74581.1| NADH dehydrogenase beta subunit [Thermococcus sp. AM4] Length = 194 Score = 108 bits (269), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 52/135 (38%), Positives = 78/135 (57%) Query: 43 VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL 102 + L WAR SL + F C +EM RYDLERFG P +PR +D+ ++ G + Sbjct: 18 FEPLFRWARKKSLWIVAFCTGCGGIEMPPLFTARYDLERFGMMPNPAPRMADLFLITGYV 77 Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162 T K + Y+ M +P+YV++ GSC GG Y SY+VV+ D+ +P+D+ + GC P Sbjct: 78 TPKTLKRIIITYEMMQDPKYVLAHGSCPINGGVYWDSYNVVKQLDKYIPIDVAIAGCMPR 137 Query: 163 AEALIYGILLLQKKI 177 EA++ GI + +KI Sbjct: 138 PEAVMDGIREIMRKI 152 >gi|283835553|ref|ZP_06355294.1| hydrogenase-4 component I [Citrobacter youngae ATCC 29220] gi|291068763|gb|EFE06872.1| hydrogenase-4 component I [Citrobacter youngae ATCC 29220] Length = 255 Score = 108 bits (269), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 51/122 (41%), Positives = 70/122 (57%), Gaps = 4/122 (3%) Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 G C +E+ P +D ERFG SPR +D+++ G +T M S R + P+P Sbjct: 47 GCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDP 106 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176 + IS G+C N GG +H Y V G D+IVPVD+Y+PGCPPT A +YG LL++K Sbjct: 107 KICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQK 166 Query: 177 IR 178 I Sbjct: 167 IH 168 >gi|325288319|ref|YP_004264500.1| NADH dehydrogenase (quinone) [Syntrophobotulus glycolicus DSM 8271] gi|324963720|gb|ADY54499.1| NADH dehydrogenase (quinone) [Syntrophobotulus glycolicus DSM 8271] Length = 247 Score = 108 bits (269), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 46/114 (40%), Positives = 75/114 (65%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C EM + P YD++R GF ASPR +DV++V G +T + A+++ + P P+ ++ Sbjct: 134 CDWEMTTLTGPVYDIQRLGFDFVASPRHADVLMVTGPVTRNLRIAVQKTFQATPAPKLIV 193 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 ++G+CA GG SY+ G DR++PVDIY+PGCPP +ALI G++ +++K+ Sbjct: 194 AVGTCACSGGICGKSYASAGGVDRVLPVDIYIPGCPPRPQALIQGLMKIREKLE 247 >gi|295097300|emb|CBK86390.1| Ni,Fe-hydrogenase III small subunit [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 255 Score = 108 bits (269), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 51/122 (41%), Positives = 70/122 (57%), Gaps = 4/122 (3%) Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 G C +E+ P +D ERFG SPR +D+++ G +T M S R + P+P Sbjct: 47 GCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDP 106 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176 + IS G+C N GG +H Y V G D+IVPVD+Y+PGCPPT A +YG LL++K Sbjct: 107 KICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQK 166 Query: 177 IR 178 I Sbjct: 167 IH 168 >gi|168230908|ref|ZP_02655966.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|194445653|ref|YP_002042089.1| formate hydrogenlyase subunit G [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194472446|ref|ZP_03078430.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|197265511|ref|ZP_03165585.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|194404316|gb|ACF64538.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194458810|gb|EDX47649.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|197243766|gb|EDY26386.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|205334465|gb|EDZ21229.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] Length = 255 Score = 108 bits (269), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 51/122 (41%), Positives = 70/122 (57%), Gaps = 4/122 (3%) Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 G C +E+ P +D ERFG SPR +D+++ G +T M S R + P+P Sbjct: 47 GCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDP 106 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176 + IS G+C N GG +H Y V G D+IVPVD+Y+PGCPPT A +YG LL++K Sbjct: 107 KICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQK 166 Query: 177 IR 178 I Sbjct: 167 IH 168 >gi|16761624|ref|NP_457241.1| formate hydrogenlyase subunit 7 [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|213052199|ref|ZP_03345077.1| formate hydrogenlyase subunit 7 [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213426140|ref|ZP_03358890.1| formate hydrogenlyase subunit 7 [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213648116|ref|ZP_03378169.1| formate hydrogenlyase subunit 7 [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213855567|ref|ZP_03383807.1| formate hydrogenlyase subunit 7 [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|289823877|ref|ZP_06543483.1| formate hydrogenlyase subunit 7 [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|25298993|pir||AC0846 formate hydrogenlyase chain 7 [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16503925|emb|CAD05954.1| formate hydrogenlyase subunit 7 [Salmonella enterica subsp. enterica serovar Typhi] Length = 255 Score = 108 bits (269), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 51/122 (41%), Positives = 70/122 (57%), Gaps = 4/122 (3%) Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 G C +E+ P +D ERFG SPR +D+++ G +T M S R + P+P Sbjct: 47 GCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDP 106 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176 + IS G+C N GG +H Y V G D+IVPVD+Y+PGCPPT A +YG LL++K Sbjct: 107 KICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQK 166 Query: 177 IR 178 I Sbjct: 167 IH 168 >gi|237729674|ref|ZP_04560155.1| hydrogenase activity [Citrobacter sp. 30_2] gi|226908280|gb|EEH94198.1| hydrogenase activity [Citrobacter sp. 30_2] Length = 255 Score = 107 bits (268), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 51/122 (41%), Positives = 70/122 (57%), Gaps = 4/122 (3%) Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 G C +E+ P +D ERFG SPR +D+++ G +T M S R + P+P Sbjct: 47 GCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDP 106 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176 + IS G+C N GG +H Y V G D+IVPVD+Y+PGCPPT A +YG LL++K Sbjct: 107 KICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQK 166 Query: 177 IR 178 I Sbjct: 167 IH 168 >gi|16766153|ref|NP_461768.1| hydrogenase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|62181350|ref|YP_217767.1| hydrogenase activity [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161502108|ref|YP_001569220.1| hypothetical protein SARI_00125 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|161615750|ref|YP_001589715.1| hypothetical protein SPAB_03541 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167550313|ref|ZP_02344070.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|167994151|ref|ZP_02575243.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168235879|ref|ZP_02660937.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168242577|ref|ZP_02667509.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168262039|ref|ZP_02684012.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168464027|ref|ZP_02697944.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168820465|ref|ZP_02832465.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194448464|ref|YP_002046808.1| formate hydrogenlyase subunit G [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194734314|ref|YP_002115800.1| formate hydrogenlyase subunit G [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197248973|ref|YP_002147745.1| formate hydrogenlyase subunit G [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|200388880|ref|ZP_03215492.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|224584624|ref|YP_002638422.1| formate hydrogenlyase subunit 7 [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|238909614|ref|ZP_04653451.1| formate hydrogenlyase subunit 7 [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|16421393|gb|AAL21727.1| hydrogenase activity [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|62128983|gb|AAX66686.1| hydrogenase activity [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|160863455|gb|ABX20078.1| hypothetical protein SARI_00125 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] gi|161365114|gb|ABX68882.1| hypothetical protein SPAB_03541 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194406768|gb|ACF66987.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194709816|gb|ACF89037.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195633447|gb|EDX51861.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197212676|gb|ACH50073.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197290829|gb|EDY30183.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|199605978|gb|EDZ04523.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205324705|gb|EDZ12544.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205327917|gb|EDZ14681.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205337969|gb|EDZ24733.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205342888|gb|EDZ29652.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205348984|gb|EDZ35615.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|224469151|gb|ACN46981.1| formate hydrogenlyase subunit 7 [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|261247983|emb|CBG25816.1| formate hydrogenlyase subunit 7 [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267994970|gb|ACY89855.1| hydrogenase [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301159407|emb|CBW18925.1| formate hydrogenlyase subunit 7 [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312913865|dbj|BAJ37839.1| formate hydrogenlyase subunit G [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320087250|emb|CBY97015.1| NAD(P)H-quinone oxidoreductase subunit K, chloroplastic NAD(P)H dehydrogenase subunit K; NADH-plastoquinone oxidoreductase subunit K [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321223400|gb|EFX48466.1| Formate hydrogenlyase subunit 7 [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322614334|gb|EFY11265.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322621601|gb|EFY18454.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322624462|gb|EFY21295.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322628793|gb|EFY25576.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322633480|gb|EFY30222.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322635944|gb|EFY32652.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322639652|gb|EFY36337.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322646835|gb|EFY43338.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322650603|gb|EFY47008.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322654785|gb|EFY51104.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322659005|gb|EFY55258.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322664428|gb|EFY60622.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322668323|gb|EFY64480.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322673697|gb|EFY69798.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322677758|gb|EFY73821.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322681412|gb|EFY77444.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322683814|gb|EFY79824.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|322715833|gb|EFZ07404.1| hydrogenase [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323131198|gb|ADX18628.1| hydrogenase [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|323193797|gb|EFZ79000.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323200267|gb|EFZ85349.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323203230|gb|EFZ88259.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323205523|gb|EFZ90488.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323216337|gb|EGA01064.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323221085|gb|EGA05516.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323226906|gb|EGA11088.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323230810|gb|EGA14928.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323234839|gb|EGA18925.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323238878|gb|EGA22928.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323241578|gb|EGA25609.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323248275|gb|EGA32211.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323251141|gb|EGA35014.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323256024|gb|EGA39762.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323263159|gb|EGA46697.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323264336|gb|EGA47842.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323271163|gb|EGA54591.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|332989719|gb|AEF08702.1| hydrogenase [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 255 Score = 107 bits (268), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 51/122 (41%), Positives = 70/122 (57%), Gaps = 4/122 (3%) Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 G C +E+ P +D ERFG SPR +D+++ G +T M S R + P+P Sbjct: 47 GCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDP 106 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176 + IS G+C N GG +H Y V G D+IVPVD+Y+PGCPPT A +YG LL++K Sbjct: 107 KICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQK 166 Query: 177 IR 178 I Sbjct: 167 IH 168 >gi|288933891|ref|YP_003437950.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Klebsiella variicola At-22] gi|288888620|gb|ADC56938.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Klebsiella variicola At-22] Length = 255 Score = 107 bits (268), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 51/121 (42%), Positives = 70/121 (57%), Gaps = 4/121 (3%) Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 G C +E+ P +D ERFG SPR +D+++ G +T M S R + P+P Sbjct: 47 GCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDP 106 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176 + IS G+C N GG +H Y V G D+IVPVD+Y+PGCPPT A +YG LL++K Sbjct: 107 KICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQK 166 Query: 177 I 177 I Sbjct: 167 I 167 >gi|283786731|ref|YP_003366596.1| formate hydrogenlyase subunit 7 [Citrobacter rodentium ICC168] gi|282950185|emb|CBG89821.1| formate hydrogenlyase subunit 7 [Citrobacter rodentium ICC168] Length = 255 Score = 107 bits (268), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 51/122 (41%), Positives = 70/122 (57%), Gaps = 4/122 (3%) Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 G C +E+ P +D ERFG SPR +D+++ G +T M S R + P+P Sbjct: 47 GCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDP 106 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176 + IS G+C N GG +H Y V G D+IVPVD+Y+PGCPPT A +YG LL++K Sbjct: 107 KICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQK 166 Query: 177 IR 178 I Sbjct: 167 IH 168 >gi|204928419|ref|ZP_03219619.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|204322741|gb|EDZ07938.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] Length = 255 Score = 107 bits (268), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 51/122 (41%), Positives = 70/122 (57%), Gaps = 4/122 (3%) Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 G C +E+ P +D ERFG SPR +D+++ G +T M S R + P+P Sbjct: 47 GCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDP 106 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176 + IS G+C N GG +H Y V G D+IVPVD+Y+PGCPPT A +YG LL++K Sbjct: 107 KICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQK 166 Query: 177 IR 178 I Sbjct: 167 IH 168 >gi|29143108|ref|NP_806450.1| formate hydrogenlyase subunit 7 [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|29138741|gb|AAO70310.1| formate hydrogenlyase subunit 7 [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 255 Score = 107 bits (268), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 51/122 (41%), Positives = 70/122 (57%), Gaps = 4/122 (3%) Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 G C +E+ P +D ERFG SPR +D+++ G +T M S R + P+P Sbjct: 47 GCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGVVTRAMRSPALRAWQSAPDP 106 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176 + IS G+C N GG +H Y V G D+IVPVD+Y+PGCPPT A +YG LL++K Sbjct: 107 KICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQK 166 Query: 177 IR 178 I Sbjct: 167 IH 168 >gi|261345089|ref|ZP_05972733.1| hydrogenase-4 component I [Providencia rustigianii DSM 4541] gi|282566773|gb|EFB72308.1| hydrogenase-4 component I [Providencia rustigianii DSM 4541] Length = 260 Score = 107 bits (268), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 51/121 (42%), Positives = 71/121 (58%), Gaps = 4/121 (3%) Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 G C +E+ A P +D ERFG ASPR +D+++ G +T M R Y+ P+P Sbjct: 46 GCNGCEIEIFSAITPVFDAERFGIKVVASPRHADILLFTGAVTRAMRMPALRAYESAPDP 105 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176 + IS G+C GGG +H Y V G + IVP+D+++PGCPPT A IYG LLQ+K Sbjct: 106 KICISYGACGCGGGIFHDLYCVWGGSEHIVPIDVWIPGCPPTPAATIYGFAVALGLLQQK 165 Query: 177 I 177 + Sbjct: 166 L 166 >gi|207858110|ref|YP_002244761.1| formate hydrogenlyase subunit 7 [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|206709913|emb|CAR34267.1| formate hydrogenlyase subunit 7 [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] Length = 255 Score = 107 bits (268), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 51/122 (41%), Positives = 70/122 (57%), Gaps = 4/122 (3%) Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 G C +E+ P +D ERFG SPR +D+++ G +T M S R + P+P Sbjct: 47 GCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDP 106 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176 + IS G+C N GG +H Y V G D+IVPVD+Y+PGCPPT A +YG LL++K Sbjct: 107 KICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQK 166 Query: 177 IR 178 I Sbjct: 167 IH 168 >gi|152971578|ref|YP_001336687.1| hypothetical protein KPN_03056 [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|206580829|ref|YP_002236935.1| formate hydrogenlyase, subunit G [Klebsiella pneumoniae 342] gi|238896176|ref|YP_002920912.1| hydrogenase 3 small subunit [Klebsiella pneumoniae NTUH-K2044] gi|290511028|ref|ZP_06550397.1| formate hydrogenlyase subunit 7 hycG [Klebsiella sp. 1_1_55] gi|150956427|gb|ABR78457.1| hypothetical protein KPN_03056 [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|206569887|gb|ACI11663.1| formate hydrogenlyase, subunit G [Klebsiella pneumoniae 342] gi|238548494|dbj|BAH64845.1| hydrogenase 3 small subunit [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|289776021|gb|EFD84020.1| formate hydrogenlyase subunit 7 hycG [Klebsiella sp. 1_1_55] Length = 255 Score = 107 bits (268), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 51/121 (42%), Positives = 70/121 (57%), Gaps = 4/121 (3%) Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 G C +E+ P +D ERFG SPR +D+++ G +T M S R + P+P Sbjct: 47 GCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDP 106 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176 + IS G+C N GG +H Y V G D+IVPVD+Y+PGCPPT A +YG LL++K Sbjct: 107 KICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQK 166 Query: 177 I 177 I Sbjct: 167 I 167 >gi|324497290|gb|ADY39445.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [bacterium enrichment culture clone P24-9H] Length = 255 Score = 107 bits (268), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 51/122 (41%), Positives = 70/122 (57%), Gaps = 4/122 (3%) Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 G C +E+ P +D ERFG SPR +D+++ G +T M S R + P+P Sbjct: 47 GCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDP 106 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176 + IS G+C N GG +H Y V G D+IVPVD+Y+PGCPPT A +YG LL++K Sbjct: 107 KICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQK 166 Query: 177 IR 178 I Sbjct: 167 IH 168 >gi|326202175|ref|ZP_08192045.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Clostridium papyrosolvens DSM 2782] gi|325987970|gb|EGD48796.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Clostridium papyrosolvens DSM 2782] Length = 266 Score = 107 bits (268), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 48/107 (44%), Positives = 69/107 (64%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C E+ + P D+ERFG ASPR +D+++V G ++ M AL + Y+ P P+ V+ Sbjct: 154 CDYEIQALNGPYNDIERFGIHFVASPRHADMLLVTGCVSRNMEEALVKTYNATPSPKLVV 213 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171 + G+CA GG + SY+ G D I+PVD+Y+PGCPP +ALIYGIL Sbjct: 214 AAGACACSGGLFKDSYAGRNGIDTILPVDVYIPGCPPRPQALIYGIL 260 >gi|323212811|gb|EFZ97622.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] Length = 228 Score = 107 bits (268), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 51/122 (41%), Positives = 70/122 (57%), Gaps = 4/122 (3%) Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 G C +E+ P +D ERFG SPR +D+++ G +T M S R + P+P Sbjct: 20 GCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDP 79 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176 + IS G+C N GG +H Y V G D+IVPVD+Y+PGCPPT A +YG LL++K Sbjct: 80 KICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQK 139 Query: 177 IR 178 I Sbjct: 140 IH 141 >gi|311278313|ref|YP_003940544.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Enterobacter cloacae SCF1] gi|308747508|gb|ADO47260.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Enterobacter cloacae SCF1] Length = 255 Score = 107 bits (268), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 51/122 (41%), Positives = 70/122 (57%), Gaps = 4/122 (3%) Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 G C +E+ P +D ERFG SPR +D+++ G +T M S R + P+P Sbjct: 47 GCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDP 106 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176 + IS G+C N GG +H Y V G D+IVPVD+Y+PGCPPT A +YG LL++K Sbjct: 107 KICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQK 166 Query: 177 IR 178 I Sbjct: 167 IH 168 >gi|213417095|ref|ZP_03350239.1| formate hydrogenlyase subunit 7 [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 229 Score = 107 bits (268), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 51/122 (41%), Positives = 70/122 (57%), Gaps = 4/122 (3%) Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 G C +E+ P +D ERFG SPR +D+++ G +T M S R + P+P Sbjct: 47 GCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDP 106 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176 + IS G+C N GG +H Y V G D+IVPVD+Y+PGCPPT A +YG LL++K Sbjct: 107 KICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQK 166 Query: 177 IR 178 I Sbjct: 167 IH 168 >gi|307353719|ref|YP_003894770.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanoplanus petrolearius DSM 11571] gi|307156952|gb|ADN36332.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanoplanus petrolearius DSM 11571] Length = 145 Score = 107 bits (268), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 48/116 (41%), Positives = 74/116 (63%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E++ MPR+D ERFG SPR +DV++V G + + M L RVY+QM +P+ VI Sbjct: 24 CDIEIVATLMPRHDPERFGIKLVGSPRHADVLLVTGPVVHAMKERLIRVYEQMADPKVVI 83 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 +G+C GG ++ SY++ ++PVD+YVPGC P EA+I G++ K+ R+ Sbjct: 84 CVGACGQSGGVFYDSYNLDGPVGEVIPVDVYVPGCAPRPEAIINGVVKAIAKLERL 139 >gi|262043973|ref|ZP_06017057.1| hydrogenase-4 component I [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259038699|gb|EEW39886.1| hydrogenase-4 component I [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 255 Score = 107 bits (268), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 51/122 (41%), Positives = 70/122 (57%), Gaps = 4/122 (3%) Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 G C +E+ P +D ERFG SPR +D+++ G +T M S R + P+P Sbjct: 47 GCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDP 106 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176 + IS G+C N GG +H Y V G D+IVPVD+Y+PGCPPT A +YG LL++K Sbjct: 107 KICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQK 166 Query: 177 IR 178 I Sbjct: 167 IH 168 >gi|333001926|gb|EGK21492.1| hydrogenase-4 component I [Shigella flexneri K-218] Length = 252 Score = 107 bits (268), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 52/124 (41%), Positives = 73/124 (58%), Gaps = 4/124 (3%) Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 G C +E+ A P +D ERFG +SPR +D+++ GT+T M R Y+ P+ Sbjct: 43 GCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGTVTRAMRMPALRAYESAPDH 102 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176 + +S G+C GGG +H YSV G D IVP+D+++PGCPPT A I+G LLQ+K Sbjct: 103 KICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHGFAVALGLLQQK 162 Query: 177 IRRV 180 I V Sbjct: 163 IHAV 166 >gi|296104395|ref|YP_003614541.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295058854|gb|ADF63592.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 255 Score = 107 bits (268), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 51/121 (42%), Positives = 70/121 (57%), Gaps = 4/121 (3%) Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 G C +E+ P +D ERFG SPR +D+++ G +T M S R + P+P Sbjct: 47 GCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSTPDP 106 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176 + IS G+C N GG +H Y V G D+IVPVD+Y+PGCPPT A +YG LL++K Sbjct: 107 KICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQK 166 Query: 177 I 177 I Sbjct: 167 I 167 >gi|284006929|emb|CBA72200.1| hydrogenase-4 component I [Arsenophonus nasoniae] Length = 255 Score = 107 bits (268), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 50/122 (40%), Positives = 70/122 (57%), Gaps = 4/122 (3%) Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 G C +E+ P +D ERFG SPR +D+++ G +T M + R + P+P Sbjct: 47 GCNGCEIEIFATLSPMFDAERFGIKVVPSPRHADILLFTGAVTRAMRTPALRAWHSAPDP 106 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176 + IS G+C N GG +H Y V G D+IVPVD+Y+PGCPPT A +YG LL++K Sbjct: 107 KIAISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQK 166 Query: 177 IR 178 I Sbjct: 167 IH 168 >gi|148791384|gb|ABR12484.1| hydrogenase 3 small subunit [Klebsiella oxytoca] Length = 255 Score = 107 bits (268), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 51/121 (42%), Positives = 70/121 (57%), Gaps = 4/121 (3%) Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 G C +E+ P +D ERFG SPR +D+++ G +T M S R + P+P Sbjct: 47 GCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDP 106 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176 + IS G+C N GG +H Y V G D+IVPVD+Y+PGCPPT A +YG LL++K Sbjct: 107 KICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQK 166 Query: 177 I 177 I Sbjct: 167 I 167 >gi|332755132|gb|EGJ85497.1| hydrogenase-4 component I [Shigella flexneri 4343-70] Length = 231 Score = 107 bits (268), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 52/124 (41%), Positives = 73/124 (58%), Gaps = 4/124 (3%) Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 G C +E+ A P +D ERFG +SPR +D+++ GT+T M R Y+ P+ Sbjct: 22 GCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGTVTRAMRMPALRAYESAPDH 81 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176 + +S G+C GGG +H YSV G D IVP+D+++PGCPPT A I+G LLQ+K Sbjct: 82 KICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHGFAVALGLLQQK 141 Query: 177 IRRV 180 I V Sbjct: 142 IHAV 145 >gi|189218530|ref|YP_001939171.1| formate hydrogenlyase subunit 7 [Methylacidiphilum infernorum V4] gi|161075799|gb|ABX56647.1| putative formate hydrogenlyase [Methylacidiphilum infernorum V4] gi|189185388|gb|ACD82573.1| Formate hydrogenlyase subunit 7 [Methylacidiphilum infernorum V4] Length = 177 Score = 107 bits (268), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 49/110 (44%), Positives = 73/110 (66%), Gaps = 1/110 (0%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E+ + P YD+ERFG ASPR +D+++V G +T M AL+R YD MP P++V+ Sbjct: 65 CELEIHALNNPFYDIERFGIRFVASPRHADLLLVTGPVTKNMVEALKRTYDCMPHPKWVV 124 Query: 125 SMGSCANGGGYYHYSYSVVR-GCDRIVPVDIYVPGCPPTAEALIYGILLL 173 + G CA G G + SY+VV+ G + I+PVD+ + GCPPT L+ G++ L Sbjct: 125 AAGDCALGRGVFSQSYAVVKEGVEAIIPVDLRIDGCPPTPLDLLRGLVYL 174 >gi|261342161|ref|ZP_05970019.1| hydrogenase-4 component I [Enterobacter cancerogenus ATCC 35316] gi|288315494|gb|EFC54432.1| hydrogenase-4 component I [Enterobacter cancerogenus ATCC 35316] Length = 255 Score = 107 bits (268), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 51/121 (42%), Positives = 70/121 (57%), Gaps = 4/121 (3%) Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 G C +E+ P +D ERFG SPR +D+++ G +T M S R + P+P Sbjct: 47 GCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDP 106 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176 + IS G+C N GG +H Y V G D+IVPVD+Y+PGCPPT A +YG LL++K Sbjct: 107 KICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQK 166 Query: 177 I 177 I Sbjct: 167 I 167 >gi|205353791|ref|YP_002227592.1| formate hydrogenlyase subunit 7 [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205273572|emb|CAR38559.1| formate hydrogenlyase subunit 7 [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|326628899|gb|EGE35242.1| formate hydrogenlyase subunit 7 [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 255 Score = 107 bits (268), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 51/122 (41%), Positives = 70/122 (57%), Gaps = 4/122 (3%) Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 G C +E+ P +D ERFG SPR +D+++ G +T M S R + P+P Sbjct: 47 GCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPELRAWQSAPDP 106 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176 + IS G+C N GG +H Y V G D+IVPVD+Y+PGCPPT A +YG LL++K Sbjct: 107 KICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQK 166 Query: 177 IR 178 I Sbjct: 167 IH 168 >gi|73748664|ref|YP_307903.1| hydrogenase, group 4, EchC subunit [Dehalococcoides sp. CBDB1] gi|147669423|ref|YP_001214241.1| ech hydrogenase subunit C [Dehalococcoides sp. BAV1] gi|289432690|ref|YP_003462563.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Dehalococcoides sp. GT] gi|73660380|emb|CAI82987.1| hydrogenase, group 4, EchC subunit [Dehalococcoides sp. CBDB1] gi|146270371|gb|ABQ17363.1| ech hydrogenase subunit C [Dehalococcoides sp. BAV1] gi|288946410|gb|ADC74107.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Dehalococcoides sp. GT] Length = 155 Score = 107 bits (268), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 44/108 (40%), Positives = 70/108 (64%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E++ P YD+ERFG +P+ SDV++V G + LR +Y+QMPEP+ VI Sbjct: 25 CDIEILACLTPLYDVERFGIVNMGNPKHSDVLLVTGPANKRNYRVLRNLYEQMPEPKVVI 84 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILL 172 +G+C GG +H +++ G D+++PVD+YVPGC EA+I G+++ Sbjct: 85 VIGTCGCSGGVFHNCPNILGGVDKVIPVDVYVPGCAARPEAIIDGVVM 132 >gi|157370668|ref|YP_001478657.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Serratia proteamaculans 568] gi|157322432|gb|ABV41529.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Serratia proteamaculans 568] Length = 265 Score = 107 bits (268), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 53/122 (43%), Positives = 70/122 (57%), Gaps = 4/122 (3%) Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 G C +E+ A P +D ERFG SPR +D+++ G +T M R + P+P Sbjct: 48 GCNGCEIEIFAAVSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRIPAIRAWQASPDP 107 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176 + IS G+C N GG +H Y V G DRIVPVD+Y+PGCPPT A IYG LL +K Sbjct: 108 KISISYGACGNSGGIFHDLYCVWGGTDRIVPVDVYIPGCPPTPAATIYGFAMALGLLDQK 167 Query: 177 IR 178 I+ Sbjct: 168 IK 169 >gi|295099918|emb|CBK89007.1| ech hydrogenase subunit C [Eubacterium cylindroides T2-87] Length = 143 Score = 107 bits (268), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 42/116 (36%), Positives = 78/116 (67%), Gaps = 4/116 (3%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E++ +MPR+D+ERFG +P +D++++ G + + A ++++Y QMP P+ V+ Sbjct: 21 CDIEVLACTMPRFDIERFGIINTGNPFHADILLITGGVNAQSAEVVKQIYSQMPHPKVVV 80 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176 ++G CA GG + Y+++ G D+++PVD+YVPGC +++I G+L +L+KK Sbjct: 81 AVGICACTGGVFKDCYNILGGVDKVIPVDVYVPGCAARPQSIIDGVLKAVDILEKK 136 >gi|220929108|ref|YP_002506017.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Clostridium cellulolyticum H10] gi|219999436|gb|ACL76037.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Clostridium cellulolyticum H10] Length = 266 Score = 107 bits (267), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 48/107 (44%), Positives = 69/107 (64%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C E+ + P D+ERFG ASPR +D+++V G ++ M AL + Y+ P P+ V+ Sbjct: 154 CDYEVQALNGPYNDIERFGIHFVASPRHADMLLVTGCVSRNMEEALVKTYNATPSPKLVV 213 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171 + G+CA GG + SY+ G D I+PVD+Y+PGCPP +ALIYGIL Sbjct: 214 AAGACACSGGLFKDSYAGRNGIDTILPVDVYIPGCPPRPQALIYGIL 260 >gi|82545206|ref|YP_409153.1| hydrogenase activity [Shigella boydii Sb227] gi|81246617|gb|ABB67325.1| hydrogenase activity [Shigella boydii Sb227] gi|332092087|gb|EGI97165.1| formate hydrogenlyase subunit 7 [Shigella boydii 3594-74] Length = 255 Score = 107 bits (267), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 51/120 (42%), Positives = 69/120 (57%), Gaps = 5/120 (4%) Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 G C +E+ P +D ERFG SPR +D+++ G +T M S R + P+P Sbjct: 47 GCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDP 106 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGI-----LLLQK 175 + IS G+C N GG +H Y V G D+IVPVD+Y+PGCPPT A +YG LL+QK Sbjct: 107 KICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLVQK 166 >gi|288932068|ref|YP_003436128.1| NADH-quinone oxidoreductase subunit beta [Ferroglobus placidus DSM 10642] gi|288894316|gb|ADC65853.1| NADH-quinone oxidoreductase, B subunit [Ferroglobus placidus DSM 10642] Length = 356 Score = 107 bits (267), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 58/146 (39%), Positives = 81/146 (55%), Gaps = 5/146 (3%) Query: 32 EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPR 91 E HKG L L W S+ ACC VE+ A YD ER G R Sbjct: 6 EFLHKGPLAP----LKKWGTKFSIWPTHLVTACCGVELAHAFASGYDGERLGVLNFGMAR 61 Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151 Q++ ++V G +T KMA AL+ Y+QMP+P++VI MG+C GG + Y++V+ + +VP Sbjct: 62 QTNCIVVEGAITRKMARALKITYEQMPDPKFVIVMGACGIKGGIFWNGYNMVKPFE-VVP 120 Query: 152 VDIYVPGCPPTAEALIYGILLLQKKI 177 V + PGCPPT E+L+ LQK+I Sbjct: 121 VKYFAPGCPPTPESLLRCFRSLQKEI 146 >gi|197286367|ref|YP_002152239.1| hydrogenase-4 component I [Proteus mirabilis HI4320] gi|227357421|ref|ZP_03841775.1| hydrogenase-4 component I [Proteus mirabilis ATCC 29906] gi|194683854|emb|CAR44984.1| hydrogenase-4 component I [Proteus mirabilis HI4320] gi|227162379|gb|EEI47379.1| hydrogenase-4 component I [Proteus mirabilis ATCC 29906] Length = 260 Score = 107 bits (267), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 50/122 (40%), Positives = 72/122 (59%), Gaps = 4/122 (3%) Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 G C +E+ A P +D ERFG ASPR +D+++ G +T +M R Y+ P+P Sbjct: 46 GCNGCEIEIFSAITPVFDAERFGIKVVASPRHADILLFTGAVTRQMRVPALRAYESAPDP 105 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176 + IS G+C GGG +H Y V G + IVP+D+++PGCPPT A IYG LL +K Sbjct: 106 KICISYGACGCGGGIFHDLYCVWGGSETIVPIDVWIPGCPPTPAATIYGFAVALGLLDQK 165 Query: 177 IR 178 ++ Sbjct: 166 LK 167 >gi|90426039|ref|YP_534409.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Rhodopseudomonas palustris BisB18] gi|90108053|gb|ABD90090.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Rhodopseudomonas palustris BisB18] Length = 246 Score = 107 bits (267), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 50/118 (42%), Positives = 71/118 (60%), Gaps = 4/118 (3%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E+ A P +D ERFG ASPR +D+++ G +T M R Y+ P+P+ V+ Sbjct: 37 CEIEIFAAITPIFDAERFGIKVVASPRHADILLFTGAVTRAMRMPALRAYEAAPDPKIVV 96 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKKIR 178 S G+C GG +H Y V G D++VPVD+Y+PGCPPT A IYG LL +K++ Sbjct: 97 SYGACGCTGGIFHDLYCVWGGTDQVVPVDVYIPGCPPTPPATIYGFAVALGLLDQKLK 154 >gi|330829825|ref|YP_004392777.1| formate hydrogenlyase subunit 7 [Aeromonas veronii B565] gi|328804961|gb|AEB50160.1| Formate hydrogenlyase subunit 7 [Aeromonas veronii B565] Length = 271 Score = 107 bits (267), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 50/122 (40%), Positives = 71/122 (58%), Gaps = 4/122 (3%) Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 G C +E+ P +D ERFG ASPR +D+++ G +T M R Y+ P+P Sbjct: 51 GCNACEIEIFATITPLFDAERFGIKVVASPRHADILLFTGAVTRAMRVPALRAYEAAPDP 110 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176 + I+ G+C GG +H Y V G D+IVPVD+Y+PGCPPT A IYG LL++K Sbjct: 111 KICIAYGACGCDGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATIYGFAVALGLLEQK 170 Query: 177 IR 178 ++ Sbjct: 171 LK 172 >gi|27381455|ref|NP_772984.1| hydrogenase-3 subunit G [Bradyrhizobium japonicum USDA 110] gi|27354623|dbj|BAC51609.1| hycG [Bradyrhizobium japonicum USDA 110] Length = 177 Score = 107 bits (266), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 47/109 (43%), Positives = 71/109 (65%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E+ + YD+ERFG ASPR +DV++V G +T M AL R Y P+P++V+ Sbjct: 58 CELEIHALNNAYYDVERFGLRFVASPRHADVLMVTGPVTKNMRDALERTYHATPDPKWVV 117 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLL 173 ++G CA GG + SY+VV G ++VPVD+++PGCPP ++ G+L L Sbjct: 118 AVGDCARDGGCFAGSYAVVGGVSQVVPVDLHIPGCPPPPTTILRGLLAL 166 >gi|297545022|ref|YP_003677324.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296842797|gb|ADH61313.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 155 Score = 107 bits (266), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 48/106 (45%), Positives = 73/106 (68%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E++ P YD+ERFG +P+ +D+++V GT+ +K L+ +YDQMPEP+ V+ Sbjct: 28 CDIELLSCMTPLYDMERFGMVNVGNPKHADILVVTGTVNHKNKVVLKNIYDQMPEPKVVV 87 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGI 170 ++G CA GG + Y+VV G D+I+PVD+YVPGCP EA+I G+ Sbjct: 88 AVGVCAATGGIFRECYNVVGGVDKIIPVDVYVPGCPAKPEAIIDGL 133 >gi|238921134|ref|YP_002934649.1| hydrogenase-4 component I [Edwardsiella ictaluri 93-146] gi|238870703|gb|ACR70414.1| hydrogenase-4 component I [Edwardsiella ictaluri 93-146] Length = 274 Score = 107 bits (266), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 51/118 (43%), Positives = 70/118 (59%), Gaps = 4/118 (3%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E+ A P +D ERFG ASPR +D+++ G +T M R Y P+P+ VI Sbjct: 61 CEIEIFAAISPLFDAERFGIKVVASPRHADILLFTGAVTRAMRIPAIRAYQSAPDPKIVI 120 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKKIR 178 S G+C GG +H Y V G D+IVPVD+Y+PGCPPT A +YG LL +K++ Sbjct: 121 SYGACGCSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAVALGLLDQKLK 178 >gi|269140240|ref|YP_003296941.1| hydrogenase activity [Edwardsiella tarda EIB202] gi|267985901|gb|ACY85730.1| hydrogenase activity [Edwardsiella tarda EIB202] gi|304560070|gb|ADM42734.1| Formate hydrogenlyase subunit 7 [Edwardsiella tarda FL6-60] Length = 273 Score = 107 bits (266), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 51/118 (43%), Positives = 70/118 (59%), Gaps = 4/118 (3%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E+ A P +D ERFG ASPR +D+++ G +T M R Y P+P+ VI Sbjct: 60 CEIEIFAAISPLFDAERFGIKVVASPRHADILLFTGAVTRAMRIPAIRAYQSAPDPKIVI 119 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKKIR 178 S G+C GG +H Y V G D+IVPVD+Y+PGCPPT A +YG LL +K++ Sbjct: 120 SYGACGCSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAVALGLLDQKLK 177 >gi|299132789|ref|ZP_07025984.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Afipia sp. 1NLS2] gi|298592926|gb|EFI53126.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Afipia sp. 1NLS2] Length = 169 Score = 107 bits (266), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 49/109 (44%), Positives = 70/109 (64%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E+ S P YDLERFG ASPR +DV++V G +T M L R YD MP P++V+ Sbjct: 58 CELELNALSNPYYDLERFGLRFVASPRHADVLLVTGPVTKNMREPLLRTYDAMPAPKWVV 117 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLL 173 ++G CA GG Y SY+ RG + ++PV++ + GCPP+ L+ G+L L Sbjct: 118 AVGDCAACGGLYADSYACERGANAVLPVNLRIVGCPPSPTQLLEGLLAL 166 >gi|254458925|ref|ZP_05072348.1| hydrogenase-4 component I [Campylobacterales bacterium GD 1] gi|207084196|gb|EDZ61485.1| hydrogenase-4 component I [Campylobacterales bacterium GD 1] Length = 184 Score = 107 bits (266), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 51/120 (42%), Positives = 76/120 (63%), Gaps = 4/120 (3%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E++ A P+YDLERFG +P+QSDV +V G +T + L +Y QMPEP+ V+ Sbjct: 25 CDIEILAALGPKYDLERFGVINTGNPKQSDVFLVTGPVTYRSRERLVELYIQMPEPKVVV 84 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKKIRRV 180 + GSC GG + Y+V G DR +PVD+YVPGC + E LI G++ +L++K + + Sbjct: 85 AFGSCTCTGGVFRDMYNVEDGIDRYIPVDVYVPGCAASPELLIDGLVKALDILKEKTKEM 144 >gi|300921421|ref|ZP_07137781.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 115-1] gi|300411655|gb|EFJ94965.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 115-1] Length = 176 Score = 107 bits (266), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 51/124 (41%), Positives = 72/124 (58%), Gaps = 4/124 (3%) Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 G C +E+ A P +D ERFG +SPR +D+++ G +T M R Y+ P+ Sbjct: 43 GCNACEIEIFAAITPVFDAERFGIKVISSPRHADILLFTGAVTRAMRMPALRAYESAPDH 102 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176 + +S G+C GGG +H YSV G D IVP+D+++PGCPPT A I+G LLQ+K Sbjct: 103 KICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHGFAVALGLLQQK 162 Query: 177 IRRV 180 I V Sbjct: 163 IHAV 166 >gi|289578801|ref|YP_003477428.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Thermoanaerobacter italicus Ab9] gi|289528514|gb|ADD02866.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Thermoanaerobacter italicus Ab9] Length = 155 Score = 107 bits (266), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 48/106 (45%), Positives = 73/106 (68%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E++ P YD+ERFG +P+ +D+++V GT+ +K L+ +YDQMPEP+ V+ Sbjct: 28 CDIELLSCMTPLYDMERFGMVNVGNPKHADILVVTGTVNHKNKVVLKNIYDQMPEPKVVV 87 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGI 170 ++G CA GG + Y+VV G D+I+PVD+YVPGCP EA+I G+ Sbjct: 88 AVGVCAATGGIFRECYNVVGGVDKIIPVDVYVPGCPAKPEAIIDGL 133 >gi|117617723|ref|YP_857018.1| hydrogenase-4 component I [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117559130|gb|ABK36078.1| hydrogenase-4 component I [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 271 Score = 107 bits (266), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 50/122 (40%), Positives = 71/122 (58%), Gaps = 4/122 (3%) Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 G C +E+ P +D ERFG ASPR +D+++ G +T M R Y+ P+P Sbjct: 51 GCNACEIEIFATITPLFDAERFGIKVVASPRHADILLFTGAVTRAMRVPALRAYEAAPDP 110 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176 + I+ G+C GG +H Y V G D+IVPVD+Y+PGCPPT A IYG LL++K Sbjct: 111 KICIAYGACGCDGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATIYGFAVALGLLEQK 170 Query: 177 IR 178 ++ Sbjct: 171 LK 172 >gi|154250405|ref|YP_001411230.1| NADH dehydrogenase subunit B [Fervidobacterium nodosum Rt17-B1] gi|154154341|gb|ABS61573.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Fervidobacterium nodosum Rt17-B1] Length = 181 Score = 107 bits (266), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 57/152 (37%), Positives = 86/152 (56%), Gaps = 10/152 (6%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP 90 S+I + DQL R+ S+ + + C AVE+ + R+D+ER G P A+P Sbjct: 2 SKIDERSVWEKIADQL----RSRSMWMLHYCTGCGAVELPPSMTSRFDMERLGMGPMATP 57 Query: 91 RQSDVMIVAGTLTNKMASALRRV---YDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCD 147 RQ+D+ ++ G L+ A LRRV Y++M +P+YVI GSC GG Y+ SYS + D Sbjct: 58 RQADIFLITGYLS---AKTLRRVIYTYEKMADPKYVIGFGSCTINGGIYYDSYSTINRLD 114 Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179 +PVD+Y+ GC P EA++ L + IR+ Sbjct: 115 YYIPVDLYIAGCMPRPEAILNAFNQLMEMIRK 146 >gi|124486434|ref|YP_001031050.1| ech hydrogenase subunit C [Methanocorpusculum labreanum Z] gi|124363975|gb|ABN07783.1| ech hydrogenase subunit C [Methanocorpusculum labreanum Z] Length = 144 Score = 107 bits (266), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 45/107 (42%), Positives = 69/107 (64%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E++ A P YD+ERFG +P +D+ +V G + + L+ +YDQ+PEP+ V+ Sbjct: 21 CDIEILAALTPVYDVERFGIINTGNPAHADIFVVTGGVNEQNKVVLKNLYDQIPEPKVVV 80 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171 ++G CA+ GG + Y++ G D I+PVD+YVPGC EALI GI+ Sbjct: 81 AVGICASSGGVFRDCYNISGGVDTIIPVDVYVPGCSVRPEALIEGIV 127 >gi|332999462|gb|EGK19047.1| formate hydrogenlyase subunit 7 [Shigella flexneri VA-6] Length = 255 Score = 107 bits (266), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 52/125 (41%), Positives = 70/125 (56%), Gaps = 4/125 (3%) Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 G C +E+ P +D ERFG SPR +D+++ G +T M S R + P+P Sbjct: 47 GCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDP 106 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176 + IS G+C N GG H Y V G D+IVPVD+Y+PGCPPT A +YG LL++K Sbjct: 107 KICISYGACGNSGGILHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQK 166 Query: 177 IRRVG 181 I G Sbjct: 167 IHARG 171 >gi|209964717|ref|YP_002297632.1| hydrogenase-4 Fe-S subunit I [Rhodospirillum centenum SW] gi|209958183|gb|ACI98819.1| hydrogenase-4 Fe-S subunit I [Rhodospirillum centenum SW] Length = 196 Score = 106 bits (265), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 46/110 (41%), Positives = 74/110 (67%) Query: 64 CCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYV 123 C +E+ + P YDLERFGF+ ASPR +DV++V G +T M AL + ++ P+P++V Sbjct: 57 ACEMEIHALNNPVYDLERFGFSFVASPRHADVLLVTGPVTTNMREALLKTWEATPDPKWV 116 Query: 124 ISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLL 173 +++G CA GG + SY+VV G +++VPVD+ +PGCPP ++ ++ L Sbjct: 117 VALGQCAIDGGPFADSYAVVGGVEKVVPVDLMIPGCPPRPVDILAALVAL 166 >gi|154149575|ref|YP_001403193.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Candidatus Methanoregula boonei 6A8] gi|153998127|gb|ABS54550.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Methanoregula boonei 6A8] Length = 163 Score = 106 bits (265), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 43/107 (40%), Positives = 69/107 (64%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E++ P YD+ERFG +P+ +D+ +V G++ + +R +YDQMP+P+ V+ Sbjct: 21 CDIEILACLTPMYDVERFGIINTGNPKHADIFVVTGSVNEQNKYVIRNIYDQMPDPKVVV 80 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171 ++G CA GG + Y+V G D I+PVD+YVPGC E++I GI+ Sbjct: 81 AIGICATSGGIFRECYNVAGGIDTIIPVDVYVPGCAARPESIIDGIV 127 >gi|212710435|ref|ZP_03318563.1| hypothetical protein PROVALCAL_01497 [Providencia alcalifaciens DSM 30120] gi|212686855|gb|EEB46383.1| hypothetical protein PROVALCAL_01497 [Providencia alcalifaciens DSM 30120] Length = 260 Score = 106 bits (265), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 50/121 (41%), Positives = 71/121 (58%), Gaps = 4/121 (3%) Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 G C +E+ A P +D ERFG ASPR +D+++ G +T M R Y+ P+P Sbjct: 46 GCNGCEIEIFSAITPVFDAERFGIKVVASPRHADILLFTGAVTRAMRMPALRAYESAPDP 105 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176 + IS G+C GGG +H Y V G + IVP+D+++PGCPPT A IYG LL++K Sbjct: 106 KICISYGACGCGGGIFHDLYCVWGGSEHIVPIDVWIPGCPPTPAATIYGFAVALGLLKQK 165 Query: 177 I 177 + Sbjct: 166 L 166 >gi|145298794|ref|YP_001141635.1| hydrogenase-4 component I [Aeromonas salmonicida subsp. salmonicida A449] gi|142851566|gb|ABO89887.1| hydrogenase-4 component I [Aeromonas salmonicida subsp. salmonicida A449] Length = 271 Score = 106 bits (265), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 50/121 (41%), Positives = 70/121 (57%), Gaps = 4/121 (3%) Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 G C +E+ P +D ERFG ASPR +D+++ G +T M R Y+ P+P Sbjct: 51 GCNACEIEIFATITPLFDAERFGIKVVASPRHADILLFTGAVTRAMRVPALRAYEAAPDP 110 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176 + I+ G+C GG +H Y V G D+IVPVD+Y+PGCPPT A IYG LL++K Sbjct: 111 KICIAYGACGCDGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATIYGFAVALGLLEQK 170 Query: 177 I 177 + Sbjct: 171 L 171 >gi|289806308|ref|ZP_06536937.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 160 Score = 106 bits (264), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 46/108 (42%), Positives = 64/108 (59%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E+ P +D ERFG SPR +D+++ G +T M S R + P+P+ I Sbjct: 51 CEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICI 110 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILL 172 S G+C N GG +H Y V G D+IVPVD+Y+PGCPPT A +YG + Sbjct: 111 SYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAM 158 >gi|73749343|ref|YP_308582.1| hydrogenase, group 4, HycG subunit [Dehalococcoides sp. CBDB1] gi|147669953|ref|YP_001214771.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Dehalococcoides sp. BAV1] gi|73661059|emb|CAI83666.1| hydrogenase, group 4, HycG subunit [Dehalococcoides sp. CBDB1] gi|146270901|gb|ABQ17893.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Dehalococcoides sp. BAV1] Length = 171 Score = 106 bits (264), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 56/158 (35%), Positives = 91/158 (57%), Gaps = 9/158 (5%) Query: 23 DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCA-VEMMQASMPRYDLER 81 DA+F ++ GF + S + + R+ ++ + G A +E+ S P YD+ER Sbjct: 21 DAEFDKL-------GFALKSEINTI-FGRSLAIRALDSGSDNAAEIELNNLSNPYYDVER 72 Query: 82 FGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYS 141 FG + ASPR +D++IV G +T MA A+R+ +D MP P+ VI++G A GG Y Sbjct: 73 FGISFVASPRHADILIVTGAVTQNMAIAVRKTFDAMPSPKLVIALGDDACSGGIASGGYG 132 Query: 142 VVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179 V+ G D+I+PV++ +PG PP +I +L L + +R+ Sbjct: 133 VLGGVDKILPVNLKIPGNPPEPAQIINSLLGLMQSLRK 170 >gi|126178312|ref|YP_001046277.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Methanoculleus marisnigri JR1] gi|125861106|gb|ABN56295.1| ech hydrogenase subunit C [Methanoculleus marisnigri JR1] Length = 160 Score = 106 bits (264), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 43/116 (37%), Positives = 74/116 (63%), Gaps = 4/116 (3%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E++ P YD+ERFG +P+ +D++++ G + + + +Y+QMPEP+ VI Sbjct: 21 CDIEVLACLTPLYDVERFGMINTGNPKHADILLITGGINTQNREVVENIYEQMPEPKVVI 80 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176 ++G CA GG + Y++V G D+++PVD+YVPGC E +I G++ +L+KK Sbjct: 81 AVGVCAATGGIFRECYNIVGGIDKVIPVDVYVPGCAARPEQIIDGVVTALSILEKK 136 >gi|15803012|ref|NP_289042.1| hydrogenase 4 Fe-S subunit [Escherichia coli O157:H7 EDL933] gi|12516874|gb|AAG57599.1|AE005478_9 hydrogenase 4 Fe-S subunit [Escherichia coli O157:H7 str. EDL933] Length = 252 Score = 106 bits (264), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 51/124 (41%), Positives = 72/124 (58%), Gaps = 4/124 (3%) Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 G C +E+ A P +D ERFG +SPR +D+++ G +T M R Y+ P+ Sbjct: 43 GCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMRMPALRAYESAPDH 102 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176 + +S G+C GGG +H YSV G D IVP+D+++PGCPPT A I+G LLQ+K Sbjct: 103 KICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHGFAVALGLLQQK 162 Query: 177 IRRV 180 I V Sbjct: 163 IHAV 166 >gi|327252139|gb|EGE63811.1| hydrogenase-4 component I [Escherichia coli STEC_7v] Length = 249 Score = 106 bits (264), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 51/124 (41%), Positives = 72/124 (58%), Gaps = 4/124 (3%) Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 G C +E+ A P +D ERFG +SPR +D+++ G +T M R Y+ P+ Sbjct: 40 GCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMRMPALRAYESAPDH 99 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176 + +S G+C GGG +H YSV G D IVP+D+++PGCPPT A I+G LLQ+K Sbjct: 100 KICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHGFAVALGLLQQK 159 Query: 177 IRRV 180 I V Sbjct: 160 IHAV 163 >gi|94468067|gb|ABF20066.1| Ech hydrogenase small subunit [Klebsiella pneumoniae] Length = 255 Score = 106 bits (264), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 51/121 (42%), Positives = 69/121 (57%), Gaps = 4/121 (3%) Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 G C +E+ P +D ERFG SPR +D+++ G +T M S R + P+P Sbjct: 47 GCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDP 106 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176 + IS G+C N GG H Y V G D+IVPVD+Y+PGCPPT A +YG LL++K Sbjct: 107 KICISYGACGNSGGILHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQK 166 Query: 177 I 177 I Sbjct: 167 I 167 >gi|260913690|ref|ZP_05920166.1| hydrogenase-4 component I [Pasteurella dagmatis ATCC 43325] gi|260632229|gb|EEX50404.1| hydrogenase-4 component I [Pasteurella dagmatis ATCC 43325] Length = 254 Score = 106 bits (264), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 49/122 (40%), Positives = 71/122 (58%), Gaps = 4/122 (3%) Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 G C +E+ P +D ERFG ASPR +D+++ G +T M + R Y+ P+P Sbjct: 42 GCNGCEIEIFSTITPVFDAERFGIKVVASPRHADILLFTGAVTRAMLAPALRAYEAAPDP 101 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176 + +S G+C GG +H Y V G D+IVP+D+Y+PGCPPT A IYG LL +K Sbjct: 102 KICVSYGACGCSGGIFHDLYCVWGGSDKIVPIDVYIPGCPPTPAATIYGFAMALGLLDQK 161 Query: 177 IR 178 ++ Sbjct: 162 LK 163 >gi|148264693|ref|YP_001231399.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Geobacter uraniireducens Rf4] gi|146398193|gb|ABQ26826.1| ech hydrogenase subunit C [Geobacter uraniireducens Rf4] Length = 147 Score = 106 bits (264), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 43/107 (40%), Positives = 70/107 (65%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E++ + P YDLERFG +P+ +D++ V G++ K L+ +YDQMP P+ ++ Sbjct: 21 CDIELIASLTPLYDLERFGIMSTGNPKHADILAVTGSVNEKSRQVLQNLYDQMPNPKVIV 80 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171 ++G CA G + Y+V+ G D+++PVD+YVPGC EA+I G+L Sbjct: 81 AVGICATSGCVFQDCYNVLGGVDKVLPVDVYVPGCAARPEAIIDGVL 127 >gi|323170245|gb|EFZ55898.1| hydrogenase-4 component I [Escherichia coli LT-68] Length = 249 Score = 106 bits (264), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 51/124 (41%), Positives = 72/124 (58%), Gaps = 4/124 (3%) Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 G C +E+ A P +D ERFG +SPR +D+++ G +T M R Y+ P+ Sbjct: 40 GCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMRMPALRAYESAPDH 99 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176 + +S G+C GGG +H YSV G D IVP+D+++PGCPPT A I+G LLQ+K Sbjct: 100 KICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHGFAVALGLLQQK 159 Query: 177 IRRV 180 I V Sbjct: 160 IHAV 163 >gi|15832605|ref|NP_311378.1| hydrogenase 4 Fe-S subunit [Escherichia coli O157:H7 str. Sakai] gi|168748455|ref|ZP_02773477.1| hydrogenase-4, I subunit [Escherichia coli O157:H7 str. EC4113] gi|168756258|ref|ZP_02781265.1| hydrogenase-4, I subunit [Escherichia coli O157:H7 str. EC4401] gi|168761095|ref|ZP_02786102.1| hydrogenase-4, I subunit [Escherichia coli O157:H7 str. EC4501] gi|168768578|ref|ZP_02793585.1| hydrogenase-4, I subunit [Escherichia coli O157:H7 str. EC4486] gi|168773600|ref|ZP_02798607.1| hydrogenase-4, I subunit [Escherichia coli O157:H7 str. EC4196] gi|168778452|ref|ZP_02803459.1| hydrogenase-4, I subunit [Escherichia coli O157:H7 str. EC4076] gi|168787832|ref|ZP_02812839.1| hydrogenase-4, I subunit [Escherichia coli O157:H7 str. EC869] gi|168798857|ref|ZP_02823864.1| hydrogenase-4, I subunit [Escherichia coli O157:H7 str. EC508] gi|195936632|ref|ZP_03082014.1| hydrogenase 4 Fe-S subunit [Escherichia coli O157:H7 str. EC4024] gi|208809412|ref|ZP_03251749.1| hydrogenase-4, I subunit [Escherichia coli O157:H7 str. EC4206] gi|208811962|ref|ZP_03253291.1| hydrogenase-4, I subunit [Escherichia coli O157:H7 str. EC4045] gi|208821226|ref|ZP_03261546.1| hydrogenase-4, I subunit [Escherichia coli O157:H7 str. EC4042] gi|209398464|ref|YP_002271958.1| hydrogenase-4, I subunit [Escherichia coli O157:H7 str. EC4115] gi|217327671|ref|ZP_03443754.1| hydrogenase-4, I subunit [Escherichia coli O157:H7 str. TW14588] gi|254794434|ref|YP_003079271.1| hydrogenase 4, Fe-S subunit [Escherichia coli O157:H7 str. TW14359] gi|261223078|ref|ZP_05937359.1| hydrogenase 4, Fe-S subunit [Escherichia coli O157:H7 str. FRIK2000] gi|261259370|ref|ZP_05951903.1| hydrogenase 4, Fe-S subunit [Escherichia coli O157:H7 str. FRIK966] gi|13362821|dbj|BAB36774.1| hydrogenase 4 Fe-S subunit [Escherichia coli O157:H7 str. Sakai] gi|187770648|gb|EDU34492.1| hydrogenase-4, I subunit [Escherichia coli O157:H7 str. EC4196] gi|188017086|gb|EDU55208.1| hydrogenase-4, I subunit [Escherichia coli O157:H7 str. EC4113] gi|189003438|gb|EDU72424.1| hydrogenase-4, I subunit [Escherichia coli O157:H7 str. EC4076] gi|189356622|gb|EDU75041.1| hydrogenase-4, I subunit [Escherichia coli O157:H7 str. EC4401] gi|189362304|gb|EDU80723.1| hydrogenase-4, I subunit [Escherichia coli O157:H7 str. EC4486] gi|189368448|gb|EDU86864.1| hydrogenase-4, I subunit [Escherichia coli O157:H7 str. EC4501] gi|189372275|gb|EDU90691.1| hydrogenase-4, I subunit [Escherichia coli O157:H7 str. EC869] gi|189378584|gb|EDU97000.1| hydrogenase-4, I subunit [Escherichia coli O157:H7 str. EC508] gi|208729213|gb|EDZ78814.1| hydrogenase-4, I subunit [Escherichia coli O157:H7 str. EC4206] gi|208733239|gb|EDZ81926.1| hydrogenase-4, I subunit [Escherichia coli O157:H7 str. EC4045] gi|208741349|gb|EDZ89031.1| hydrogenase-4, I subunit [Escherichia coli O157:H7 str. EC4042] gi|209159864|gb|ACI37297.1| hydrogenase-4, I subunit [Escherichia coli O157:H7 str. EC4115] gi|209763620|gb|ACI80122.1| hydrogenase 4 Fe-S subunit [Escherichia coli] gi|209763622|gb|ACI80123.1| hydrogenase 4 Fe-S subunit [Escherichia coli] gi|209763626|gb|ACI80125.1| hydrogenase 4 Fe-S subunit [Escherichia coli] gi|217320038|gb|EEC28463.1| hydrogenase-4, I subunit [Escherichia coli O157:H7 str. TW14588] gi|254593834|gb|ACT73195.1| hydrogenase 4, Fe-S subunit [Escherichia coli O157:H7 str. TW14359] gi|320188821|gb|EFW63480.1| Hydrogenase-4 component I [Escherichia coli O157:H7 str. EC1212] gi|320640993|gb|EFX10477.1| hydrogenase 4, Fe-S subunit [Escherichia coli O157:H7 str. G5101] gi|326340284|gb|EGD64088.1| Hydrogenase-4 component I [Escherichia coli O157:H7 str. 1125] gi|326344969|gb|EGD68713.1| Hydrogenase-4 component I [Escherichia coli O157:H7 str. 1044] Length = 252 Score = 106 bits (264), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 51/124 (41%), Positives = 72/124 (58%), Gaps = 4/124 (3%) Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 G C +E+ A P +D ERFG +SPR +D+++ G +T M R Y+ P+ Sbjct: 43 GCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMRMPALRAYESAPDH 102 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176 + +S G+C GGG +H YSV G D IVP+D+++PGCPPT A I+G LLQ+K Sbjct: 103 KICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHGFAVALGLLQQK 162 Query: 177 IRRV 180 I V Sbjct: 163 IHAV 166 >gi|191169211|ref|ZP_03030966.1| hydrogenase-4, I subunit [Escherichia coli B7A] gi|190900756|gb|EDV60550.1| hydrogenase-4, I subunit [Escherichia coli B7A] Length = 252 Score = 106 bits (264), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 51/124 (41%), Positives = 72/124 (58%), Gaps = 4/124 (3%) Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 G C +E+ A P +D ERFG +SPR +D+++ G +T M R Y+ P+ Sbjct: 43 GCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMRMPALRAYESAPDH 102 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176 + +S G+C GGG +H YSV G D IVP+D+++PGCPPT A I+G LLQ+K Sbjct: 103 KICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHGFAVALGLLQQK 162 Query: 177 IRRV 180 I V Sbjct: 163 IHAV 166 >gi|323977333|gb|EGB72419.1| NADH ubiquinone oxidoreductase [Escherichia coli TW10509] Length = 252 Score = 106 bits (264), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 51/124 (41%), Positives = 72/124 (58%), Gaps = 4/124 (3%) Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 G C +E+ A P +D ERFG +SPR +D+++ G +T M R Y+ P+ Sbjct: 43 GCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMRMPALRAYESAPDH 102 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176 + +S G+C GGG +H YSV G D IVP+D+++PGCPPT A I+G LLQ+K Sbjct: 103 KICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHGFAVALGLLQQK 162 Query: 177 IRRV 180 I V Sbjct: 163 IHAV 166 >gi|323936381|gb|EGB32671.1| NADH ubiquinone oxidoreductase [Escherichia coli E1520] Length = 252 Score = 106 bits (264), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 51/124 (41%), Positives = 72/124 (58%), Gaps = 4/124 (3%) Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 G C +E+ A P +D ERFG +SPR +D+++ G +T M R Y+ P+ Sbjct: 43 GCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMRMPALRAYESAPDH 102 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176 + +S G+C GGG +H YSV G D IVP+D+++PGCPPT A I+G LLQ+K Sbjct: 103 KICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHGFAVALGLLQQK 162 Query: 177 IRRV 180 I V Sbjct: 163 IHAV 166 >gi|289433303|ref|YP_003463176.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Dehalococcoides sp. GT] gi|288947023|gb|ADC74720.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Dehalococcoides sp. GT] Length = 181 Score = 106 bits (264), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 56/158 (35%), Positives = 91/158 (57%), Gaps = 9/158 (5%) Query: 23 DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCA-VEMMQASMPRYDLER 81 DA+F ++ GF + S + + R+ ++ + G A +E+ S P YD+ER Sbjct: 31 DAEFDKL-------GFALKSEINTI-FGRSLAIRALDSGSDNSAEIELNNLSNPYYDVER 82 Query: 82 FGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYS 141 FG + ASPR +D++IV G +T MA A+R+ +D MP P+ VI++G A GG Y Sbjct: 83 FGISFVASPRHADILIVTGAVTQNMAIAVRKTFDAMPSPKLVIALGDDACSGGIASGGYG 142 Query: 142 VVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179 V+ G D+I+PV++ +PG PP +I +L L + +R+ Sbjct: 143 VLGGVDKILPVNLKIPGNPPEPAQIINALLGLMQSLRK 180 >gi|323967933|gb|EGB63345.1| NADH ubiquinone oxidoreductase [Escherichia coli M863] Length = 252 Score = 106 bits (264), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 51/124 (41%), Positives = 72/124 (58%), Gaps = 4/124 (3%) Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 G C +E+ A P +D ERFG +SPR +D+++ G +T M R Y+ P+ Sbjct: 43 GCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMRMPALRAYESAPDH 102 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176 + +S G+C GGG +H YSV G D IVP+D+++PGCPPT A I+G LLQ+K Sbjct: 103 KICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHGFAVALGLLQQK 162 Query: 177 IRRV 180 I V Sbjct: 163 IHAV 166 >gi|301024711|ref|ZP_07188354.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 69-1] gi|331664046|ref|ZP_08364956.1| hydrogenase-4 component I [Escherichia coli TA143] gi|331673944|ref|ZP_08374707.1| hydrogenase-4 component I [Escherichia coli TA280] gi|300396442|gb|EFJ79980.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 69-1] gi|331059845|gb|EGI31822.1| hydrogenase-4 component I [Escherichia coli TA143] gi|331069217|gb|EGI40609.1| hydrogenase-4 component I [Escherichia coli TA280] Length = 252 Score = 106 bits (264), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 51/124 (41%), Positives = 72/124 (58%), Gaps = 4/124 (3%) Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 G C +E+ A P +D ERFG +SPR +D+++ G +T M R Y+ P+ Sbjct: 43 GCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMRMPALRAYESAPDH 102 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176 + +S G+C GGG +H YSV G D IVP+D+++PGCPPT A I+G LLQ+K Sbjct: 103 KICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHGFAVALGLLQQK 162 Query: 177 IRRV 180 I V Sbjct: 163 IHAV 166 >gi|309702767|emb|CBJ02098.1| hydrogenase-4 component I [Escherichia coli ETEC H10407] Length = 251 Score = 106 bits (264), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 51/124 (41%), Positives = 72/124 (58%), Gaps = 4/124 (3%) Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 G C +E+ A P +D ERFG +SPR +D+++ G +T M R Y+ P+ Sbjct: 42 GCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMRMPALRAYESAPDH 101 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176 + +S G+C GGG +H YSV G D IVP+D+++PGCPPT A I+G LLQ+K Sbjct: 102 KICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHGFAVALGLLQQK 161 Query: 177 IRRV 180 I V Sbjct: 162 IHAV 165 >gi|293415752|ref|ZP_06658395.1| hydrogenase-4 component I [Escherichia coli B185] gi|291433400|gb|EFF06379.1| hydrogenase-4 component I [Escherichia coli B185] Length = 252 Score = 106 bits (264), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 51/124 (41%), Positives = 72/124 (58%), Gaps = 4/124 (3%) Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 G C +E+ A P +D ERFG +SPR +D+++ G +T M R Y+ P+ Sbjct: 43 GCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMRMPALRAYESAPDH 102 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176 + +S G+C GGG +H YSV G D IVP+D+++PGCPPT A I+G LLQ+K Sbjct: 103 KICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHGFAVALGLLQQK 162 Query: 177 IRRV 180 I V Sbjct: 163 IHAV 166 >gi|209763618|gb|ACI80121.1| hydrogenase 4 Fe-S subunit [Escherichia coli] gi|320646275|gb|EFX15202.1| hydrogenase 4, Fe-S subunit [Escherichia coli O157:H- str. 493-89] gi|320651780|gb|EFX20160.1| hydrogenase 4, Fe-S subunit [Escherichia coli O157:H- str. H 2687] gi|320657166|gb|EFX24975.1| hydrogenase 4, Fe-S subunit [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320667576|gb|EFX34491.1| hydrogenase 4, Fe-S subunit [Escherichia coli O157:H7 str. LSU-61] Length = 252 Score = 106 bits (264), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 51/124 (41%), Positives = 72/124 (58%), Gaps = 4/124 (3%) Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 G C +E+ A P +D ERFG +SPR +D+++ G +T M R Y+ P+ Sbjct: 43 GCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMRMPALRAYESAPDH 102 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176 + +S G+C GGG +H YSV G D IVP+D+++PGCPPT A I+G LLQ+K Sbjct: 103 KICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHGFAVALGLLQQK 162 Query: 177 IRRV 180 I V Sbjct: 163 IHAV 166 >gi|170682690|ref|YP_001744672.1| hydrogenase-4, I subunit [Escherichia coli SMS-3-5] gi|218700947|ref|YP_002408576.1| hydrogenase 4, Fe-S subunit [Escherichia coli IAI39] gi|170520408|gb|ACB18586.1| hydrogenase-4, I subunit [Escherichia coli SMS-3-5] gi|218370933|emb|CAR18752.1| hydrogenase 4, Fe-S subunit [Escherichia coli IAI39] Length = 252 Score = 106 bits (264), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 51/124 (41%), Positives = 72/124 (58%), Gaps = 4/124 (3%) Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 G C +E+ A P +D ERFG +SPR +D+++ G +T M R Y+ P+ Sbjct: 43 GCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMRMPALRAYESAPDH 102 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176 + +S G+C GGG +H YSV G D IVP+D+++PGCPPT A I+G LLQ+K Sbjct: 103 KICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHGFAVALGLLQQK 162 Query: 177 IRRV 180 I V Sbjct: 163 IHAV 166 >gi|291283709|ref|YP_003500527.1| Hydrogenase-4, I subunit [Escherichia coli O55:H7 str. CB9615] gi|209763624|gb|ACI80124.1| hydrogenase 4 Fe-S subunit [Escherichia coli] gi|290763582|gb|ADD57543.1| Hydrogenase-4, I subunit [Escherichia coli O55:H7 str. CB9615] gi|320662772|gb|EFX30104.1| hydrogenase 4, Fe-S subunit [Escherichia coli O55:H7 str. USDA 5905] Length = 252 Score = 106 bits (264), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 51/124 (41%), Positives = 72/124 (58%), Gaps = 4/124 (3%) Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 G C +E+ A P +D ERFG +SPR +D+++ G +T M R Y+ P+ Sbjct: 43 GCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMRMPALRAYESAPDH 102 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176 + +S G+C GGG +H YSV G D IVP+D+++PGCPPT A I+G LLQ+K Sbjct: 103 KICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHGFAVALGLLQQK 162 Query: 177 IRRV 180 I V Sbjct: 163 IHAV 166 >gi|315615732|gb|EFU96364.1| hydrogenase-4 component I [Escherichia coli 3431] Length = 249 Score = 106 bits (264), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 51/124 (41%), Positives = 72/124 (58%), Gaps = 4/124 (3%) Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 G C +E+ A P +D ERFG +SPR +D+++ G +T M R Y+ P+ Sbjct: 40 GCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMRMPALRAYESAPDH 99 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176 + +S G+C GGG +H YSV G D IVP+D+++PGCPPT A I+G LLQ+K Sbjct: 100 KICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHGFAVALGLLQQK 159 Query: 177 IRRV 180 I V Sbjct: 160 IHAV 163 >gi|293410884|ref|ZP_06654460.1| hydrogenase 4 [Escherichia coli B354] gi|284922436|emb|CBG35523.1| hydrogenase-4 component I [Escherichia coli 042] gi|291471352|gb|EFF13836.1| hydrogenase 4 [Escherichia coli B354] Length = 252 Score = 106 bits (264), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 51/124 (41%), Positives = 72/124 (58%), Gaps = 4/124 (3%) Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 G C +E+ A P +D ERFG +SPR +D+++ G +T M R Y+ P+ Sbjct: 43 GCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMRMPALRAYESAPDH 102 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176 + +S G+C GGG +H YSV G D IVP+D+++PGCPPT A I+G LLQ+K Sbjct: 103 KICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHGFAVALGLLQQK 162 Query: 177 IRRV 180 I V Sbjct: 163 IHAV 166 >gi|312973273|ref|ZP_07787445.1| hydrogenase-4 component I [Escherichia coli 1827-70] gi|310331868|gb|EFP99103.1| hydrogenase-4 component I [Escherichia coli 1827-70] Length = 249 Score = 106 bits (264), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 51/124 (41%), Positives = 72/124 (58%), Gaps = 4/124 (3%) Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 G C +E+ A P +D ERFG +SPR +D+++ G +T M R Y+ P+ Sbjct: 40 GCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMRMPALRAYESAPDH 99 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176 + +S G+C GGG +H YSV G D IVP+D+++PGCPPT A I+G LLQ+K Sbjct: 100 KICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHGFAVALGLLQQK 159 Query: 177 IRRV 180 I V Sbjct: 160 IHAV 163 >gi|218705988|ref|YP_002413507.1| hydrogenase 4, Fe-S subunit [Escherichia coli UMN026] gi|293405925|ref|ZP_06649917.1| hydrogenase-4 component I [Escherichia coli FVEC1412] gi|298381673|ref|ZP_06991272.1| hydrogenase-4 component I [Escherichia coli FVEC1302] gi|300897630|ref|ZP_07116035.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 198-1] gi|218433085|emb|CAR13980.1| hydrogenase 4, Fe-S subunit [Escherichia coli UMN026] gi|291428133|gb|EFF01160.1| hydrogenase-4 component I [Escherichia coli FVEC1412] gi|298279115|gb|EFI20629.1| hydrogenase-4 component I [Escherichia coli FVEC1302] gi|300358630|gb|EFJ74500.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 198-1] Length = 252 Score = 106 bits (264), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 51/124 (41%), Positives = 72/124 (58%), Gaps = 4/124 (3%) Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 G C +E+ A P +D ERFG +SPR +D+++ G +T M R Y+ P+ Sbjct: 43 GCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMRMPALRAYESAPDH 102 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176 + +S G+C GGG +H YSV G D IVP+D+++PGCPPT A I+G LLQ+K Sbjct: 103 KICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHGFAVALGLLQQK 162 Query: 177 IRRV 180 I V Sbjct: 163 IHAV 166 >gi|187732837|ref|YP_001881279.1| hydrogenase-4, I subunit [Shigella boydii CDC 3083-94] gi|187429829|gb|ACD09103.1| hydrogenase-4, I subunit [Shigella boydii CDC 3083-94] Length = 252 Score = 106 bits (264), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 51/124 (41%), Positives = 72/124 (58%), Gaps = 4/124 (3%) Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 G C +E+ A P +D ERFG +SPR +D+++ G +T M R Y+ P+ Sbjct: 43 GCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMRMPALRAYESAPDH 102 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176 + +S G+C GGG +H YSV G D IVP+D+++PGCPPT A I+G LLQ+K Sbjct: 103 KICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHGFAVALGLLQQK 162 Query: 177 IRRV 180 I V Sbjct: 163 IHAV 166 >gi|157158565|ref|YP_001463811.1| hydrogenase-4, I subunit [Escherichia coli E24377A] gi|300922195|ref|ZP_07138331.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 182-1] gi|301329011|ref|ZP_07222038.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 78-1] gi|157080595|gb|ABV20303.1| hydrogenase-4, I subunit [Escherichia coli E24377A] gi|300421434|gb|EFK04745.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 182-1] gi|300844645|gb|EFK72405.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 78-1] Length = 252 Score = 106 bits (264), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 51/124 (41%), Positives = 72/124 (58%), Gaps = 4/124 (3%) Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 G C +E+ A P +D ERFG +SPR +D+++ G +T M R Y+ P+ Sbjct: 43 GCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMRMPALRAYESAPDH 102 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176 + +S G+C GGG +H YSV G D IVP+D+++PGCPPT A I+G LLQ+K Sbjct: 103 KICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHGFAVALGLLQQK 162 Query: 177 IRRV 180 I V Sbjct: 163 IHAV 166 >gi|309786198|ref|ZP_07680826.1| formate hydrogenlyase subunit 7 [Shigella dysenteriae 1617] gi|308925943|gb|EFP71422.1| formate hydrogenlyase subunit 7 [Shigella dysenteriae 1617] Length = 213 Score = 106 bits (264), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 51/125 (40%), Positives = 70/125 (56%), Gaps = 4/125 (3%) Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 G C +E+ P +D ERFG SPR +D+++ G +T M S R + P+P Sbjct: 5 GCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDP 64 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176 + IS G+C N GG +H Y V G D+IVPVD+Y+P CPPT A +YG LL++K Sbjct: 65 KICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPSCPPTPAATLYGFAMALGLLEQK 124 Query: 177 IRRVG 181 I G Sbjct: 125 IHARG 129 >gi|16130414|ref|NP_416984.1| hydrogenase 4, Fe-S subunit [Escherichia coli str. K-12 substr. MG1655] gi|82544938|ref|YP_408885.1| hydrogenase 4 Fe-S subunit [Shigella boydii Sb227] gi|89109295|ref|AP_003075.1| hydrogenase 4, Fe-S subunit [Escherichia coli str. K-12 substr. W3110] gi|170082099|ref|YP_001731419.1| hydrogenase 4, Fe-S subunit [Escherichia coli str. K-12 substr. DH10B] gi|193068356|ref|ZP_03049319.1| hydrogenase-4, I subunit [Escherichia coli E110019] gi|238901654|ref|YP_002927450.1| hydrogenase 4, Fe-S subunit [Escherichia coli BW2952] gi|300958884|ref|ZP_07170990.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 175-1] gi|301023874|ref|ZP_07187605.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 196-1] gi|301644479|ref|ZP_07244476.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 146-1] gi|307139123|ref|ZP_07498479.1| hydrogenase 4, Fe-S subunit [Escherichia coli H736] gi|331643106|ref|ZP_08344241.1| hydrogenase-4 component I [Escherichia coli H736] gi|331653914|ref|ZP_08354915.1| hydrogenase-4 component I [Escherichia coli M718] gi|2499332|sp|P77668|HYFI_ECOLI RecName: Full=Hydrogenase-4 component I gi|1788834|gb|AAC75542.1| hydrogenase 4, Fe-S subunit [Escherichia coli str. K-12 substr. MG1655] gi|2668498|gb|AAB88571.1| HyfI [Escherichia coli] gi|81246349|gb|ABB67057.1| hydrogenase 4 Fe-S subunit [Shigella boydii Sb227] gi|85675423|dbj|BAA16377.2| hydrogenase 4, Fe-S subunit [Escherichia coli str. K12 substr. W3110] gi|169889934|gb|ACB03641.1| hydrogenase 4, Fe-S subunit [Escherichia coli str. K-12 substr. DH10B] gi|192958308|gb|EDV88748.1| hydrogenase-4, I subunit [Escherichia coli E110019] gi|238861461|gb|ACR63459.1| hydrogenase 4, Fe-S subunit [Escherichia coli BW2952] gi|260448432|gb|ACX38854.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Escherichia coli DH1] gi|299880628|gb|EFI88839.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 196-1] gi|300314486|gb|EFJ64270.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 175-1] gi|301077224|gb|EFK92030.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 146-1] gi|315137112|dbj|BAJ44271.1| hydrogenase 4, Fe-S subunit [Escherichia coli DH1] gi|320185186|gb|EFW59966.1| Hydrogenase-4 component I [Shigella flexneri CDC 796-83] gi|323941252|gb|EGB37437.1| NADH ubiquinone oxidoreductase [Escherichia coli E482] gi|331039904|gb|EGI12124.1| hydrogenase-4 component I [Escherichia coli H736] gi|331048763|gb|EGI20839.1| hydrogenase-4 component I [Escherichia coli M718] gi|332344309|gb|AEE57643.1| hydrogenase-4, subunit I [Escherichia coli UMNK88] Length = 252 Score = 106 bits (264), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 51/124 (41%), Positives = 72/124 (58%), Gaps = 4/124 (3%) Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 G C +E+ A P +D ERFG +SPR +D+++ G +T M R Y+ P+ Sbjct: 43 GCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMRMPALRAYESAPDH 102 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176 + +S G+C GGG +H YSV G D IVP+D+++PGCPPT A I+G LLQ+K Sbjct: 103 KICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHGFAVALGLLQQK 162 Query: 177 IRRV 180 I V Sbjct: 163 IHAV 166 >gi|323169072|gb|EFZ54749.1| hydrogenase-4 component I [Shigella sonnei 53G] Length = 249 Score = 105 bits (263), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 51/124 (41%), Positives = 72/124 (58%), Gaps = 4/124 (3%) Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 G C +E+ A P +D ERFG +SPR +D+++ G +T M R Y+ P+ Sbjct: 40 GCNACEIEIFAAITPVFDAERFGIKVISSPRHADILLFTGAVTRAMRMPALRAYESAPDH 99 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176 + +S G+C GGG +H YSV G D IVP+D+++PGCPPT A I+G LLQ+K Sbjct: 100 KICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHGFAVALGLLQQK 159 Query: 177 IRRV 180 I V Sbjct: 160 IHAV 163 >gi|256021825|ref|ZP_05435690.1| hydrogenase 4, Fe-S subunit [Escherichia sp. 4_1_40B] Length = 252 Score = 105 bits (263), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 51/124 (41%), Positives = 72/124 (58%), Gaps = 4/124 (3%) Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 G C +E+ A P +D ERFG +SPR +D+++ G +T M R Y+ P+ Sbjct: 43 GCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMRMPALRAYESAPDH 102 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176 + +S G+C GGG +H YSV G D IVP+D+++PGCPPT A I+G LLQ+K Sbjct: 103 KICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHGFAVALGLLQQK 162 Query: 177 IRRV 180 I V Sbjct: 163 IHAV 166 >gi|209919965|ref|YP_002294049.1| hydrogenase 4 Fe-S subunit [Escherichia coli SE11] gi|218555015|ref|YP_002387928.1| hydrogenase 4, Fe-S subunit [Escherichia coli IAI1] gi|218696116|ref|YP_002403783.1| hydrogenase 4, Fe-S subunit [Escherichia coli 55989] gi|309794467|ref|ZP_07688890.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 145-7] gi|209913224|dbj|BAG78298.1| hydrogenase 4 Fe-S subunit [Escherichia coli SE11] gi|218352848|emb|CAU98647.1| hydrogenase 4, Fe-S subunit [Escherichia coli 55989] gi|218361783|emb|CAQ99380.1| hydrogenase 4, Fe-S subunit [Escherichia coli IAI1] gi|308121923|gb|EFO59185.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 145-7] gi|320200049|gb|EFW74638.1| Hydrogenase-4 component I [Escherichia coli EC4100B] gi|324020088|gb|EGB89307.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 117-3] gi|324118167|gb|EGC12064.1| NADH ubiquinone oxidoreductase [Escherichia coli E1167] Length = 252 Score = 105 bits (263), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 51/124 (41%), Positives = 72/124 (58%), Gaps = 4/124 (3%) Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 G C +E+ A P +D ERFG +SPR +D+++ G +T M R Y+ P+ Sbjct: 43 GCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMRMPALRAYESAPDH 102 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176 + +S G+C GGG +H YSV G D IVP+D+++PGCPPT A I+G LLQ+K Sbjct: 103 KICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHGFAVALGLLQQK 162 Query: 177 IRRV 180 I V Sbjct: 163 IHAV 166 >gi|74313015|ref|YP_311434.1| hydrogenase 4 Fe-S subunit [Shigella sonnei Ss046] gi|157161949|ref|YP_001459267.1| hydrogenase-4, I subunit [Escherichia coli HS] gi|170019227|ref|YP_001724181.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Escherichia coli ATCC 8739] gi|194437593|ref|ZP_03069689.1| hydrogenase-4, I subunit [Escherichia coli 101-1] gi|253772619|ref|YP_003035450.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254162463|ref|YP_003045571.1| hydrogenase 4, Fe-S subunit [Escherichia coli B str. REL606] gi|297519669|ref|ZP_06938055.1| hydrogenase 4, Fe-S subunit [Escherichia coli OP50] gi|300930126|ref|ZP_07145548.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 187-1] gi|73856492|gb|AAZ89199.1| hydrogenase 4 Fe-S subunit [Shigella sonnei Ss046] gi|157067629|gb|ABV06884.1| hydrogenase-4, I subunit [Escherichia coli HS] gi|169754155|gb|ACA76854.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Escherichia coli ATCC 8739] gi|194423399|gb|EDX39390.1| hydrogenase-4, I subunit [Escherichia coli 101-1] gi|242378087|emb|CAQ32860.1| hydrogenase 4, small subunit, subunit of hydrogenase 4 [Escherichia coli BL21(DE3)] gi|253323663|gb|ACT28265.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253974364|gb|ACT40035.1| hydrogenase 4, Fe-S subunit [Escherichia coli B str. REL606] gi|253978531|gb|ACT44201.1| hydrogenase 4, Fe-S subunit [Escherichia coli BL21(DE3)] gi|300461970|gb|EFK25463.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 187-1] gi|323961283|gb|EGB56895.1| NADH ubiquinone oxidoreductase [Escherichia coli H489] gi|323970989|gb|EGB66238.1| NADH ubiquinone oxidoreductase [Escherichia coli TA007] Length = 252 Score = 105 bits (263), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 51/124 (41%), Positives = 72/124 (58%), Gaps = 4/124 (3%) Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 G C +E+ A P +D ERFG +SPR +D+++ G +T M R Y+ P+ Sbjct: 43 GCNACEIEIFAAITPVFDAERFGIKVISSPRHADILLFTGAVTRAMRMPALRAYESAPDH 102 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176 + +S G+C GGG +H YSV G D IVP+D+++PGCPPT A I+G LLQ+K Sbjct: 103 KICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHGFAVALGLLQQK 162 Query: 177 IRRV 180 I V Sbjct: 163 IHAV 166 >gi|194432188|ref|ZP_03064477.1| hydrogenase-4, I subunit [Shigella dysenteriae 1012] gi|194419717|gb|EDX35797.1| hydrogenase-4, I subunit [Shigella dysenteriae 1012] gi|320180473|gb|EFW55404.1| Hydrogenase-4 component I [Shigella boydii ATCC 9905] gi|332089845|gb|EGI94946.1| hydrogenase-4 component I [Shigella dysenteriae 155-74] Length = 252 Score = 105 bits (263), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 51/124 (41%), Positives = 72/124 (58%), Gaps = 4/124 (3%) Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 G C +E+ A P +D ERFG +SPR +D+++ G +T M R Y+ P+ Sbjct: 43 GCNACEIEIFAAITPVFDAERFGIKVISSPRHADILLFTGAVTRAMRMPALRAYESAPDH 102 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176 + +S G+C GGG +H YSV G D IVP+D+++PGCPPT A I+G LLQ+K Sbjct: 103 KICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHGFAVALGLLQQK 162 Query: 177 IRRV 180 I V Sbjct: 163 IHAV 166 >gi|300817746|ref|ZP_07097961.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 107-1] gi|300529734|gb|EFK50796.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 107-1] Length = 252 Score = 105 bits (263), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 51/124 (41%), Positives = 72/124 (58%), Gaps = 4/124 (3%) Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 G C +E+ A P +D ERFG +SPR +D+++ G +T M R Y+ P+ Sbjct: 43 GCNACEIEIFAAITPVFDAERFGIKVISSPRHADILLFTGAVTRAMRMPALRAYESAPDH 102 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176 + +S G+C GGG +H YSV G D IVP+D+++PGCPPT A I+G LLQ+K Sbjct: 103 KICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHGFAVALGLLQQK 162 Query: 177 IRRV 180 I V Sbjct: 163 IHAV 166 >gi|313650947|gb|EFS15347.1| hydrogenase-4 component I [Shigella flexneri 2a str. 2457T] gi|332766297|gb|EGJ96507.1| hydrogenase 3 and formate hydrogenlyase complex, HycG subunit [Shigella flexneri 2930-71] Length = 249 Score = 105 bits (263), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 51/124 (41%), Positives = 72/124 (58%), Gaps = 4/124 (3%) Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 G C +E+ A P +D ERFG +SPR +D+++ G +T M R Y+ P+ Sbjct: 40 GCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMRMPALRAYESAPDH 99 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176 + +S G+C GGG +H YSV G D IVP+D+++PGCPPT A I+G LLQ+K Sbjct: 100 KICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHGFAVALGLLQQK 159 Query: 177 IRRV 180 I V Sbjct: 160 IHAV 163 >gi|288961303|ref|YP_003451642.1| NADH ubiquinone oxidoreductase [Azospirillum sp. B510] gi|288913611|dbj|BAI75098.1| NADH ubiquinone oxidoreductase [Azospirillum sp. B510] Length = 259 Score = 105 bits (263), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 49/118 (41%), Positives = 71/118 (60%), Gaps = 4/118 (3%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E+ + P +D ERFG ASPR +D+++ G +T M R Y+ P+P+ V+ Sbjct: 38 CEIEIFSSITPVFDAERFGIKVVASPRHADILLFTGAVTRSMRMPALRAYEAAPDPKIVV 97 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKKIR 178 S G+C GG +H Y V G D IVPVD+Y+PGCPPT A I+G LL++K++ Sbjct: 98 SYGACGCTGGIFHDLYCVWGGTDNIVPVDVYIPGCPPTPAATIHGFAVALGLLEQKLK 155 >gi|50120178|ref|YP_049345.1| hydrogenase-4 component I [Pectobacterium atrosepticum SCRI1043] gi|49610704|emb|CAG74149.1| hydrogenase-4 component I [Pectobacterium atrosepticum SCRI1043] Length = 259 Score = 105 bits (263), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 48/124 (38%), Positives = 74/124 (59%), Gaps = 4/124 (3%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E+ A P +D ERFG ASPR +D+++ G +T M R Y+ P+P+ I Sbjct: 50 CEIEIFAAITPLFDAERFGIKVVASPRHADILLFTGAVTRAMRVPALRAYESAPDPKICI 109 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKKIRRV 180 S G+C GGG +H Y V G + IVP+D+++PGCPPT A I+G LL++K++ Sbjct: 110 SYGACGCGGGIFHDLYCVWGGSESIVPIDVWIPGCPPTPAATIHGFAVALGLLEQKLKGQ 169 Query: 181 GNVK 184 +++ Sbjct: 170 DHIQ 173 >gi|332092719|gb|EGI97788.1| hydrogenase-4 component I [Shigella boydii 3594-74] Length = 227 Score = 105 bits (263), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 51/124 (41%), Positives = 72/124 (58%), Gaps = 4/124 (3%) Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 G C +E+ A P +D ERFG +SPR +D+++ G +T M R Y+ P+ Sbjct: 18 GCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMRMPALRAYESAPDH 77 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176 + +S G+C GGG +H YSV G D IVP+D+++PGCPPT A I+G LLQ+K Sbjct: 78 KICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHGFAVALGLLQQK 137 Query: 177 IRRV 180 I V Sbjct: 138 IHAV 141 >gi|14591239|ref|NP_143316.1| NADH dehydrogenase subunit B [Pyrococcus horikoshii OT3] gi|3257873|dbj|BAA30556.1| 195aa long hypothetical NADH-ubiquinone oxidoreductase subunit [Pyrococcus horikoshii OT3] Length = 195 Score = 105 bits (263), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 52/135 (38%), Positives = 75/135 (55%) Query: 44 DQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLT 103 + L WAR SL + F C +EM RYD+ERFG SPRQ D+ ++ G +T Sbjct: 11 EPLFNWARKKSLWIVAFCTGCGGIEMPPLMTARYDIERFGMLSDPSPRQYDLFLITGYVT 70 Query: 104 NKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTA 163 K + Y+ P+P+YV++ GSC GG Y SY+ V+ D+ +PVD+++ GC P Sbjct: 71 PKTLKRIIITYELSPDPKYVLAHGSCPINGGVYWDSYNTVKHLDKYIPVDVFIAGCMPRP 130 Query: 164 EALIYGILLLQKKIR 178 EA++ GI L I Sbjct: 131 EAVMDGIYKLMDMIE 145 >gi|326389233|ref|ZP_08210801.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Thermoanaerobacter ethanolicus JW 200] gi|325994596|gb|EGD53020.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Thermoanaerobacter ethanolicus JW 200] Length = 155 Score = 105 bits (263), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 47/124 (37%), Positives = 82/124 (66%), Gaps = 4/124 (3%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E++ P YD+ERFG +P+ +D+++V GT+ + L+ +YDQMP+P+ V+ Sbjct: 28 CDIEILACMTPLYDMERFGMVNVGNPKHADILVVTGTVNTRNKEVLKNIYDQMPDPKVVV 87 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKKIRRV 180 ++G CA GG + +Y+V+ G D+++PVD+YVPGCP EA+I G+ +L++K ++ Sbjct: 88 AVGVCAATGGVFREAYNVIGGIDKVIPVDVYVPGCPAKPEAIIDGLYKAAEILKEKYEKM 147 Query: 181 GNVK 184 G + Sbjct: 148 GKAE 151 >gi|24113818|ref|NP_708328.1| hydrogenase 4 Fe-S subunit [Shigella flexneri 2a str. 301] gi|30063865|ref|NP_838036.1| hydrogenase 4 Fe-S subunit [Shigella flexneri 2a str. 2457T] gi|110806420|ref|YP_689940.1| hydrogenase 4 Fe-S subunit [Shigella flexneri 5 str. 8401] gi|24052905|gb|AAN44035.1| hydrogenase 4 Fe-S subunit [Shigella flexneri 2a str. 301] gi|30042120|gb|AAP17846.1| hydrogenase 4 Fe-S subunit [Shigella flexneri 2a str. 2457T] gi|110615968|gb|ABF04635.1| hydrogenase 4 Fe-S subunit [Shigella flexneri 5 str. 8401] gi|281601892|gb|ADA74876.1| Hydrogenase 4 Fe-S subunit [Shigella flexneri 2002017] gi|332755532|gb|EGJ85896.1| hydrogenase-4 component I [Shigella flexneri K-671] gi|332756429|gb|EGJ86780.1| hydrogenase-4 component I [Shigella flexneri 2747-71] gi|333001624|gb|EGK21192.1| hydrogenase-4 component I [Shigella flexneri VA-6] gi|333002278|gb|EGK21842.1| hydrogenase-4 component I [Shigella flexneri K-272] gi|333016099|gb|EGK35431.1| hydrogenase-4 component I [Shigella flexneri K-227] gi|333016345|gb|EGK35676.1| hydrogenase-4 component I [Shigella flexneri K-304] Length = 252 Score = 105 bits (263), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 51/124 (41%), Positives = 72/124 (58%), Gaps = 4/124 (3%) Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 G C +E+ A P +D ERFG +SPR +D+++ G +T M R Y+ P+ Sbjct: 43 GCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMRMPALRAYESAPDH 102 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176 + +S G+C GGG +H YSV G D IVP+D+++PGCPPT A I+G LLQ+K Sbjct: 103 KICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHGFAVALGLLQQK 162 Query: 177 IRRV 180 I V Sbjct: 163 IHAV 166 >gi|144900610|emb|CAM77474.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Magnetospirillum gryphiswaldense MSR-1] Length = 176 Score = 105 bits (262), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 54/113 (47%), Positives = 74/113 (65%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E+ + P YDLERFG ASPR +DV++V G ++ MA ALRR + PEPR+V+ Sbjct: 62 CELEIHAVNHPVYDLERFGIKFVASPRHADVLLVTGPVSWNMAEALRRTVEATPEPRWVV 121 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 +MG CA GG + SY+V G IVPVD+ +PGCPPT +I G+L L + + Sbjct: 122 AMGDCAIDGGCFAGSYAVAGGAAAIVPVDMTIPGCPPTPINIIAGLLALLEAV 174 >gi|325295363|ref|YP_004281877.1| NADH-quinone oxidoreductase, B subunit [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065811|gb|ADY73818.1| NADH-quinone oxidoreductase, B subunit [Desulfurobacterium thermolithotrophum DSM 11699] Length = 156 Score = 105 bits (262), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 60/138 (43%), Positives = 84/138 (60%) Query: 45 QLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTN 104 + + W+R S + F CC++E++ PR+D ER+GF SPRQ+D +IV G ++ Sbjct: 4 KFLDWSRANSPWGVHFCSGCCSLEVLALMGPRFDWERYGFMMTPSPRQADFIIVTGLVSK 63 Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164 K+ L RVY QMPEPRYV MG+CA GGG Y S V + +P DI+V GCPP E Sbjct: 64 KVLPVLLRVYQQMPEPRYVFGMGACAGGGGPYWDSDFVAVDVSQYIPFDIFVTGCPPNPE 123 Query: 165 ALIYGILLLQKKIRRVGN 182 A + G+L L++ I + N Sbjct: 124 ATLEGLLKLKEIILKNKN 141 >gi|153869972|ref|ZP_01999467.1| NADH-plastoquinone oxidoreductase subunit K [Beggiatoa sp. PS] gi|152073562|gb|EDN70533.1| NADH-plastoquinone oxidoreductase subunit K [Beggiatoa sp. PS] Length = 250 Score = 105 bits (262), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 53/157 (33%), Positives = 85/157 (54%) Query: 23 DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82 + D S + + + L +D++ R+ SL + + C A+E+ R+D ER Sbjct: 14 NTDISCRTIDPQERSMLRKVIDRIADRCRSRSLFILHYCTGCGAIELPPTITSRFDAERL 73 Query: 83 GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142 G P +PRQ+D++++ G L+ K + Y+QM P+YVI MGSC GG Y +SY+ Sbjct: 74 GIQPMVTPRQADILLITGYLSVKTLKRVILSYEQMQAPKYVIGMGSCTINGGMYWHSYAT 133 Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179 V+ +PVD+Y+ GC P EA++ G L L I + Sbjct: 134 VKRLQEYMPVDMYMAGCMPRPEAILEGFLQLIDNIDK 170 >gi|320176266|gb|EFW51327.1| Hydrogenase-4 component I [Shigella dysenteriae CDC 74-1112] Length = 224 Score = 105 bits (262), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 51/124 (41%), Positives = 72/124 (58%), Gaps = 4/124 (3%) Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 G C +E+ A P +D ERFG +SPR +D+++ G +T M R Y+ P+ Sbjct: 43 GCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMRMPALRAYESAPDH 102 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176 + +S G+C GGG +H YSV G D IVP+D+++PGCPPT A I+G LLQ+K Sbjct: 103 KICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHGFAVALGLLQQK 162 Query: 177 IRRV 180 I V Sbjct: 163 IHAV 166 >gi|300940269|ref|ZP_07154866.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 21-1] gi|300454910|gb|EFK18403.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 21-1] Length = 252 Score = 105 bits (262), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 51/124 (41%), Positives = 72/124 (58%), Gaps = 4/124 (3%) Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 G C +E+ A P +D ERFG +SPR +D+++ G +T M R Y+ P+ Sbjct: 43 GCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMRMPALRAYESAPDH 102 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176 + +S G+C GGG +H YSV G D IVP+D+++PGCPPT A I+G LLQ+K Sbjct: 103 KICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPVATIHGFAVALGLLQQK 162 Query: 177 IRRV 180 I V Sbjct: 163 IHAV 166 >gi|82777869|ref|YP_404218.1| hydrogenase 4 Fe-S subunit [Shigella dysenteriae Sd197] gi|81242017|gb|ABB62727.1| hydrogenase 4 Fe-S subunit [Shigella dysenteriae Sd197] Length = 252 Score = 105 bits (262), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 51/124 (41%), Positives = 72/124 (58%), Gaps = 4/124 (3%) Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 G C +E+ A P +D ERFG +SPR +D+++ G +T M R Y+ P+ Sbjct: 43 GCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMRMPALRAYESAPDH 102 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176 + +S G+C GGG +H YSV G D IVP+D+++PGCPPT A I+G LLQ+K Sbjct: 103 KICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWLPGCPPTPAATIHGFAVALGLLQQK 162 Query: 177 IRRV 180 I V Sbjct: 163 IHAV 166 >gi|86748390|ref|YP_484886.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Rhodopseudomonas palustris HaA2] gi|86571418|gb|ABD05975.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Rhodopseudomonas palustris HaA2] Length = 177 Score = 105 bits (262), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 46/113 (40%), Positives = 73/113 (64%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E+ + YD+ERFG ASPR +DV++V G +T+ M ALR YD +P P++V+ Sbjct: 58 CELEIHALNNAYYDVERFGLRFVASPRHADVLMVTGPVTHNMREALRLTYDAVPGPKWVV 117 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 ++G CA GG + SY+V G ++PVD+++PGCPP+ ++ G+L L + Sbjct: 118 AVGDCAKDGGCFAGSYAVAGGVSAVIPVDLHIPGCPPSPMQILRGLLALLDSV 170 >gi|20806654|ref|NP_621825.1| NADH:ubiquinone oxidoreductase 20 kD subunit and related Fe-S oxidoreductase [Thermoanaerobacter tengcongensis MB4] gi|20515103|gb|AAM23429.1| NADH:ubiquinone oxidoreductase 20 kD subunit and related Fe-S oxidoreductases [Thermoanaerobacter tengcongensis MB4] Length = 155 Score = 105 bits (262), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 47/121 (38%), Positives = 82/121 (67%), Gaps = 4/121 (3%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E++ P YD+ERFG +P+ +D+++V G++ + L+ +YDQMPEP+ V+ Sbjct: 28 CDIEILACMTPIYDMERFGMMNVGNPKHADILVVTGSVNTRNKDVLKNIYDQMPEPKVVV 87 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKKIRRV 180 ++G CA GG + +Y+V+ G D+++PVD+YVPGCP EA+I G+ +L++K +++ Sbjct: 88 AVGVCAATGGVFRDTYNVLGGVDKVIPVDVYVPGCPAKPEAIIDGLYKATEILKEKYKKM 147 Query: 181 G 181 G Sbjct: 148 G 148 >gi|88603078|ref|YP_503256.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Methanospirillum hungatei JF-1] gi|88188540|gb|ABD41537.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Methanospirillum hungatei JF-1] Length = 170 Score = 105 bits (262), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 47/116 (40%), Positives = 72/116 (62%) Query: 64 CCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYV 123 +E+ S P YD+ERFG ASPR +D++ V G +T+ M AL + Y+ PEP++V Sbjct: 54 AAEIELANLSAPHYDVERFGITFVASPRHADILAVTGVVTHGMKEALIKTYEATPEPKFV 113 Query: 124 ISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179 I++G A GG Y +Y+VV D ++PVD+ +PG PPT A++ G+L L ++ Sbjct: 114 IAVGDDACTGGMYIGTYAVVGPVDAVIPVDLKIPGNPPTPAAILEGLLTLMNVAKK 169 >gi|302670765|ref|YP_003830725.1| ech hydrogenase subunit C EchC [Butyrivibrio proteoclasticus B316] gi|302395238|gb|ADL34143.1| ech hydrogenase subunit C EchC [Butyrivibrio proteoclasticus B316] Length = 228 Score = 105 bits (261), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 44/120 (36%), Positives = 79/120 (65%), Gaps = 4/120 (3%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E++ P YD+ERFG +P+ +DV+++ G + + A +R++Y+ MP+P+ V+ Sbjct: 20 CDIEVLATMTPLYDVERFGIINTGNPKHADVLLLTGGVNAQTAPVIRQLYNMMPDPKVVV 79 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKKIRRV 180 + G CA GG + Y+++ G D++VPVD+YVPGC EALI G++ +L++K +++ Sbjct: 80 ACGICACDGGIFKECYNILGGADKVVPVDVYVPGCAVRPEALIEGVVKAVGILEEKRKKL 139 >gi|160879875|ref|YP_001558843.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Clostridium phytofermentans ISDg] gi|160428541|gb|ABX42104.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Clostridium phytofermentans ISDg] Length = 144 Score = 105 bits (261), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 40/107 (37%), Positives = 72/107 (67%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E++ P YD+ERFG +P+ +D++++ G++ + ++++Y+QM EP+ V+ Sbjct: 21 CDIEVLACLTPLYDVERFGIINTGNPKHADILLITGSVNEQNIPVVKQIYEQMAEPKIVV 80 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171 ++G CAN GG + Y+V G D+++PVD+YVPGC EA+I G++ Sbjct: 81 AVGICANSGGIFAECYNVSGGVDKVLPVDVYVPGCAARPEAIIDGVV 127 >gi|309784775|ref|ZP_07679408.1| hydrogenase-4 component I [Shigella dysenteriae 1617] gi|308927145|gb|EFP72619.1| hydrogenase-4 component I [Shigella dysenteriae 1617] Length = 231 Score = 105 bits (261), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 51/124 (41%), Positives = 72/124 (58%), Gaps = 4/124 (3%) Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 G C +E+ A P +D ERFG +SPR +D+++ G +T M R Y+ P+ Sbjct: 22 GCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMRMPALRAYESAPDH 81 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176 + +S G+C GGG +H YSV G D IVP+D+++PGCPPT A I+G LLQ+K Sbjct: 82 KICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWLPGCPPTPAATIHGFAVALGLLQQK 141 Query: 177 IRRV 180 I V Sbjct: 142 IHAV 145 >gi|218696313|ref|YP_002403980.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit [Escherichia coli 55989] gi|218353045|emb|CAU98870.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit [Escherichia coli 55989] Length = 255 Score = 105 bits (261), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 51/125 (40%), Positives = 70/125 (56%), Gaps = 4/125 (3%) Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 G C +E+ P +D ERFG SPR +D+++ G +T M S + P+P Sbjct: 47 GCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALCAWQSAPDP 106 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176 + IS G+C N GG +H Y V G D+IVPVD+Y+PGCPPT A +YG LL++K Sbjct: 107 KICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQK 166 Query: 177 IRRVG 181 I G Sbjct: 167 IHARG 171 >gi|320450490|ref|YP_004202586.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, precursor [Thermus scotoductus SA-01] gi|320150659|gb|ADW22037.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, precursor [Thermus scotoductus SA-01] Length = 262 Score = 105 bits (261), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 54/125 (43%), Positives = 81/125 (64%), Gaps = 4/125 (3%) Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 GLA + ++ P D+ RFGF ASPR +D ++V G ++ MA ALRR Y+ MPEP Sbjct: 138 GLADSEIALL--GNPFNDMGRFGFQVVASPRHADALLVTGPVSRNMAEALRRTYEAMPEP 195 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI--R 178 + V+++G+ A GG + S V+ G D++VPVD+YVPG PP A+++G++LL ++ R Sbjct: 196 KGVVAVGNEAISGGVFAGSPQVLSGVDQVVPVDVYVPGDPPRPGAILHGLMLLVGRMTQR 255 Query: 179 RVGNV 183 VG V Sbjct: 256 LVGGV 260 >gi|296446945|ref|ZP_06888880.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methylosinus trichosporium OB3b] gi|296255512|gb|EFH02604.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methylosinus trichosporium OB3b] Length = 169 Score = 105 bits (261), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 46/109 (42%), Positives = 70/109 (64%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E+ + YDLERFG ASPR +DV++V G +T M A+ R Y P+P++V+ Sbjct: 58 CELEIHALNNAFYDLERFGLRFVASPRHADVLLVTGPMTKNMREAVERTYAATPDPKWVV 117 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLL 173 ++G CA GG Y SY+ G D+++PVD+++ GCPP AL+ G++ L Sbjct: 118 AVGDCACSGGLYAESYACEGGVDKVIPVDLHIRGCPPEPVALLEGLIAL 166 >gi|257064036|ref|YP_003143708.1| ech hydrogenase subunit C [Slackia heliotrinireducens DSM 20476] gi|256791689|gb|ACV22359.1| ech hydrogenase subunit C [Slackia heliotrinireducens DSM 20476] Length = 146 Score = 104 bits (260), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 45/124 (36%), Positives = 77/124 (62%), Gaps = 4/124 (3%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E++ A P YD ERFG +P+ +D+ ++ G++ + ++ +Y+QM EP+ V+ Sbjct: 21 CDIEVLAALSPVYDAERFGVINTGNPKHADIFVITGSVNERNIDVVKELYEQMVEPKVVV 80 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKKIRRV 180 + GSCA GG +H Y+V+ G D +PVD+YVPGC E++I G++ +L++K + Sbjct: 81 ACGSCACSGGIFHDCYNVLGGVDNAIPVDVYVPGCAVRPESIIDGVVEAIGILEEKAAAL 140 Query: 181 GNVK 184 N K Sbjct: 141 KNKK 144 >gi|307825300|ref|ZP_07655520.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methylobacter tundripaludum SV96] gi|307733756|gb|EFO04613.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methylobacter tundripaludum SV96] Length = 171 Score = 104 bits (260), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 47/109 (43%), Positives = 69/109 (63%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E+ + P YD+ERFG ASPR +DV++V G ++ M +AL R Y+ P P++VI Sbjct: 58 CELEIHALNNPFYDIERFGVHFVASPRHADVLLVTGPVSRHMQTALLRTYEATPNPKWVI 117 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLL 173 + G CA GG + SY+ ++PVD+ +PGCPPT AL+ G+L L Sbjct: 118 AAGDCAACGGEFGVSYASCGAVSNVIPVDVVIPGCPPTPLALMKGLLGL 166 >gi|258646992|ref|ZP_05734461.1| NADH dehydrogenase I, B subunit [Dialister invisus DSM 15470] gi|260404433|gb|EEW97980.1| NADH dehydrogenase I, B subunit [Dialister invisus DSM 15470] Length = 156 Score = 104 bits (260), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 47/127 (37%), Positives = 78/127 (61%), Gaps = 2/127 (1%) Query: 47 VTWARTGSLMWMTFGLAC--CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTN 104 + + R + + G +C C +E++ MP YD+ERFG P+ +DV +V G + Sbjct: 1 MAYIRKSAWLIHYDGSSCNGCDIEVLACLMPLYDVERFGIINTGDPKHADVFLVTGGVNV 60 Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164 + +R++Y+QMPEP+ V+++G+CA GG + Y+++ G D VPVD+YVPGC E Sbjct: 61 QNLPVVRQIYEQMPEPKVVVAVGTCACTGGIFKDCYNMIGGMDHAVPVDVYVPGCAARPE 120 Query: 165 ALIYGIL 171 A+I G++ Sbjct: 121 AIIDGVV 127 >gi|323141862|ref|ZP_08076723.1| 4Fe-4S binding domain protein [Phascolarctobacterium sp. YIT 12067] gi|322413609|gb|EFY04467.1| 4Fe-4S binding domain protein [Phascolarctobacterium sp. YIT 12067] Length = 240 Score = 104 bits (259), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 50/106 (47%), Positives = 67/106 (63%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C E+ S P YDL R+G A ASPR +D+++V G +T + ALR YD MPEP+ V+ Sbjct: 124 CDFELGAMSNPVYDLHRYGIAFVASPRHADMLMVTGVVTRNLEQALRMTYDAMPEPKMVM 183 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGI 170 + G+CA GG Y +Y+VV +VPVDI VPGCPP A+I + Sbjct: 184 ACGACACGGETYGSTYAVVGRAADVVPVDIAVPGCPPRPAAIIVAL 229 >gi|218548077|ref|YP_002381868.1| hydrogenase 4, Fe-S subunit [Escherichia fergusonii ATCC 35469] gi|218355618|emb|CAQ88229.1| hydrogenase 4, Fe-S subunit [Escherichia fergusonii ATCC 35469] Length = 268 Score = 104 bits (259), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 50/122 (40%), Positives = 70/122 (57%), Gaps = 4/122 (3%) Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 G C +E+ A P +D ERFG +SPR +D+++ G +T M R Y+ P+ Sbjct: 59 GCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMRMPALRAYESAPDH 118 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176 + +S G+C GGG +H Y V G D IVPVD+++PGCPPT A I+G LLQ+K Sbjct: 119 KICVSYGACGVGGGIFHDLYCVWGGSDTIVPVDVWIPGCPPTPAATIHGFAVALGLLQQK 178 Query: 177 IR 178 I Sbjct: 179 IH 180 >gi|330008023|ref|ZP_08306139.1| NADH ubiquinone oxidoreductase, subunit [Klebsiella sp. MS 92-3] gi|328535254|gb|EGF61746.1| NADH ubiquinone oxidoreductase, subunit [Klebsiella sp. MS 92-3] Length = 255 Score = 104 bits (259), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 50/121 (41%), Positives = 69/121 (57%), Gaps = 4/121 (3%) Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 G C +E+ P +D ERFG SPR +D+++ G +T M S R + P+P Sbjct: 47 GCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDP 106 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176 + IS G+C N GG +H Y V G D+IVPVD+Y+PG PPT A +YG LL++K Sbjct: 107 KICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGSPPTPAATLYGFAMALGLLEQK 166 Query: 177 I 177 I Sbjct: 167 I 167 >gi|91978313|ref|YP_570972.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Rhodopseudomonas palustris BisB5] gi|91684769|gb|ABE41071.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Rhodopseudomonas palustris BisB5] Length = 177 Score = 104 bits (259), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 45/113 (39%), Positives = 72/113 (63%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E+ S YD+ERFG ASPR +DV++V G +T+ M ALR Y+ +P P++V+ Sbjct: 58 CELEIHALSNAYYDVERFGLRFVASPRHADVLMVTGPVTHNMREALRLTYEAVPGPKWVV 117 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 + G CA GG + SY++ G ++PVD+++PGCPP+ ++ G+L L + Sbjct: 118 ATGDCAKDGGCFAGSYAITGGVSAVIPVDLHIPGCPPSPVQILRGLLALLDSV 170 >gi|324112980|gb|EGC06956.1| NADH ubiquinone oxidoreductase [Escherichia fergusonii B253] gi|325496480|gb|EGC94339.1| hydrogenase 4, Fe-S subunit [Escherichia fergusonii ECD227] Length = 255 Score = 104 bits (259), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 50/122 (40%), Positives = 70/122 (57%), Gaps = 4/122 (3%) Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 G C +E+ A P +D ERFG +SPR +D+++ G +T M R Y+ P+ Sbjct: 46 GCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMRMPALRAYESAPDH 105 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176 + +S G+C GGG +H Y V G D IVPVD+++PGCPPT A I+G LLQ+K Sbjct: 106 KICVSYGACGVGGGIFHDLYCVWGGSDTIVPVDVWIPGCPPTPAATIHGFAVALGLLQQK 165 Query: 177 IR 178 I Sbjct: 166 IH 167 >gi|307352628|ref|YP_003893679.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanoplanus petrolearius DSM 11571] gi|307155861|gb|ADN35241.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanoplanus petrolearius DSM 11571] Length = 146 Score = 104 bits (259), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 41/107 (38%), Positives = 69/107 (64%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E++ P YD+ERFG +P+ +DV +V G++ + ++ +Y QMP+P V+ Sbjct: 21 CDIEVLACLTPLYDVERFGIINTGNPKHADVFLVTGSVNEQNKPVIKNIYKQMPKPNVVV 80 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171 ++G+CA GG + Y+V G D+++PVD+YVPGC EA+I G++ Sbjct: 81 AIGACALSGGVFRECYNVAGGVDKLIPVDVYVPGCAAKPEAIIDGVV 127 >gi|284162674|ref|YP_003401297.1| NADH-quinone oxidoreductase subunit beta [Archaeoglobus profundus DSM 5631] gi|284012671|gb|ADB58624.1| NADH-quinone oxidoreductase, B subunit [Archaeoglobus profundus DSM 5631] Length = 709 Score = 104 bits (259), Expect = 7e-21, Method: Composition-based stats. Identities = 62/132 (46%), Positives = 80/132 (60%), Gaps = 1/132 (0%) Query: 46 LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNK 105 L W SL + ACC VE+ A YD ER G RQ++++IV G +T K Sbjct: 2 LKEWGTKWSLWPVHLVTACCGVELAHAYACGYDAERIGSLNYGICRQTNLIIVEGAITRK 61 Query: 106 MASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEA 165 MA LR ++QMP P++VI MG+C GG + SY +VR D + VD++VPGCPPT EA Sbjct: 62 MARVLRITWEQMPNPKFVIVMGACGIKGGLFKNSYHMVRPWDVVP-VDVFVPGCPPTPEA 120 Query: 166 LIYGILLLQKKI 177 LI GI+ LQKKI Sbjct: 121 LIRGIVALQKKI 132 >gi|115522982|ref|YP_779893.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Rhodopseudomonas palustris BisA53] gi|115516929|gb|ABJ04913.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Rhodopseudomonas palustris BisA53] Length = 173 Score = 103 bits (258), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 45/105 (42%), Positives = 68/105 (64%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E+ + YD+ERFG ASPR +DV++V G +T MA AL+ YD P P++V+ Sbjct: 58 CELEIHALNNAYYDIERFGLRFVASPRHADVLLVTGPVTKNMADALKTTYDATPSPKWVV 117 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYG 169 + G CA GG + SY+VV G +++PVD+++PGCPP ++ G Sbjct: 118 ACGDCARDGGCFAGSYAVVGGVSQVIPVDLHIPGCPPPPLQILRG 162 >gi|147919863|ref|YP_686386.1| ech hydrogenase, subunit C [uncultured methanogenic archaeon RC-I] gi|110621782|emb|CAJ37060.1| Ech hydrogenase, subunit C [uncultured methanogenic archaeon RC-I] Length = 157 Score = 103 bits (258), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 48/126 (38%), Positives = 76/126 (60%), Gaps = 4/126 (3%) Query: 59 TFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMP 118 T G C +E++ PRYD+ RFG +P+ +DVM+V G +T K + +Y+QMP Sbjct: 19 TGGCNGCDLEILSCLTPRYDISRFGVYSTGNPKHADVMLVVGPVTLKYKEIITNLYNQMP 78 Query: 119 EPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILL----LQ 174 +P+ V+++GSCA+ G Y Y D+++PVD+YVPGC E +I G++L L Sbjct: 79 DPKVVMAVGSCASTGAIYQGCYGTCGSLDKVIPVDVYVPGCNCRPEGIIDGLVLALDILN 138 Query: 175 KKIRRV 180 +K R++ Sbjct: 139 EKERKI 144 >gi|57234359|ref|YP_181588.1| hydrogenase, group 4, EchC subunit, putative [Dehalococcoides ethenogenes 195] gi|57224807|gb|AAW39864.1| hydrogenase, group 4, EchC subunit, putative [Dehalococcoides ethenogenes 195] Length = 155 Score = 103 bits (258), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 42/108 (38%), Positives = 69/108 (63%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E++ P YD+ERFG +P+ SDV++V G + L+ +Y QMP+P+ VI Sbjct: 25 CDIEILACLTPLYDVERFGIVNMGNPKHSDVLLVTGPANKRNYRVLQNLYQQMPDPKVVI 84 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILL 172 +G+C GG +H +++ G D+++PVD+YVPGC EA+I G+++ Sbjct: 85 VIGTCGCSGGVFHNCPNILGGVDKVIPVDVYVPGCAARPEAIIDGVVM 132 >gi|125975501|ref|YP_001039411.1| ech hydrogenase subunit C [Clostridium thermocellum ATCC 27405] gi|256004211|ref|ZP_05429194.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Clostridium thermocellum DSM 2360] gi|281419466|ref|ZP_06250480.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Clostridium thermocellum JW20] gi|125715726|gb|ABN54218.1| ech hydrogenase subunit C [Clostridium thermocellum ATCC 27405] gi|255991801|gb|EEU01900.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Clostridium thermocellum DSM 2360] gi|281406872|gb|EFB37136.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Clostridium thermocellum JW20] gi|316939621|gb|ADU73655.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Clostridium thermocellum DSM 1313] Length = 145 Score = 103 bits (257), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 40/107 (37%), Positives = 72/107 (67%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E++ P YD+ERFG +P+ +D++++ G++ + S ++++Y+QM +P+ V+ Sbjct: 21 CDIEVLACLTPLYDIERFGVINTGNPKHADILLITGSINEQNKSVVKQLYEQMADPKVVV 80 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171 ++G CA GG + Y+V G D+I+PVD+YVPGC EA+I G++ Sbjct: 81 AVGICAATGGIFSECYNVSGGVDKIIPVDVYVPGCAARPEAIIDGVV 127 >gi|313683183|ref|YP_004060921.1| ech hydrogenase subunit c [Sulfuricurvum kujiense DSM 16994] gi|313156043|gb|ADR34721.1| ech hydrogenase subunit C [Sulfuricurvum kujiense DSM 16994] Length = 173 Score = 103 bits (257), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 46/120 (38%), Positives = 75/120 (62%), Gaps = 4/120 (3%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E++ A P+YDLERFG +P+QSD+ +V G +T + L +Y Q+PEP+ V+ Sbjct: 25 CDIEILAALSPKYDLERFGVINTGNPKQSDIFLVTGPVTYRSRERLVELYSQIPEPKVVV 84 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKKIRRV 180 ++GSC GG + Y+V G DR +PVD+YVPGC + + +I ++ +L+ K + + Sbjct: 85 AVGSCTTTGGVFRGMYNVEDGIDRYIPVDVYVPGCASSPQLIIDALVKAGEILESKSKEI 144 >gi|270308166|ref|YP_003330224.1| hydrogenase, EchC subunit [Dehalococcoides sp. VS] gi|270154058|gb|ACZ61896.1| hydrogenase, EchC subunit [Dehalococcoides sp. VS] Length = 155 Score = 103 bits (257), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 42/108 (38%), Positives = 69/108 (63%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E++ P YD+ERFG +P+ SDV++V G + L+ +Y QMP+P+ VI Sbjct: 25 CDIEILACLTPIYDVERFGIVNMGNPKHSDVLLVTGPANKRNYRVLQNLYQQMPDPKVVI 84 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILL 172 +G+C GG +H +++ G D+++PVD+YVPGC EA+I G+++ Sbjct: 85 VIGTCGCSGGVFHNCPNILGGVDKVIPVDVYVPGCAARPEAIIDGVVM 132 >gi|269215531|ref|ZP_06159385.1| NADH dehydrogenase I, B subunit [Slackia exigua ATCC 700122] gi|269131018|gb|EEZ62093.1| NADH dehydrogenase I, B subunit [Slackia exigua ATCC 700122] Length = 147 Score = 103 bits (257), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 42/124 (33%), Positives = 78/124 (62%), Gaps = 4/124 (3%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E++ + P YD ERFG +P+ +D+ +V G++ + ++ +YDQM +P+ V+ Sbjct: 21 CDIEVLASLTPLYDAERFGVINTGNPKHADIFLVTGSVNERNIKVIQEIYDQMVDPKVVV 80 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKKIRRV 180 ++G CA GG +H Y+V+ G D+ +PVD+YVPGC + E +I G++ +L++K + Sbjct: 81 AVGICACSGGIFHDCYNVIGGVDQAIPVDVYVPGCAASPENIIDGVVRGVAVLEQKAAEL 140 Query: 181 GNVK 184 + + Sbjct: 141 ASAR 144 >gi|296134788|ref|YP_003642030.1| hypothetical protein Tint_0288 [Thiomonas intermedia K12] gi|295794910|gb|ADG29700.1| hypothetical protein Tint_0288 [Thiomonas intermedia K12] Length = 172 Score = 103 bits (257), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 57/151 (37%), Positives = 84/151 (55%), Gaps = 15/151 (9%) Query: 23 DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLAC--CAVEMMQASMPRYDLE 80 DA+ RIS+++ H R ++ + G +C C +E+ S P Y++E Sbjct: 28 DAEVQRISADLLH------------LIGRAPAIRVVDAG-SCNGCELEINALSNPYYNIE 74 Query: 81 RFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSY 140 G ASPR +D+++V G ++ M ALRR YD MPEPR V++ G CA G G + Y Sbjct: 75 GLGVHFVASPRHADLLLVTGPVSRHMELALRRTYDAMPEPRLVVAAGDCAAGCGVHSQGY 134 Query: 141 SVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171 +V ++PVD+ VPGCPP+ AL+ GIL Sbjct: 135 AVCGRVAEVLPVDVTVPGCPPSPVALLQGIL 165 >gi|150401363|ref|YP_001325129.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanococcus aeolicus Nankai-3] gi|150014066|gb|ABR56517.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanococcus aeolicus Nankai-3] Length = 246 Score = 103 bits (257), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 46/115 (40%), Positives = 68/115 (59%) Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 G C ++ + P YDL RFG ASPR +D +++ G +T M AL + YD P P Sbjct: 132 GCNACDADINVLNTPVYDLSRFGIKFVASPRHADGLVITGPVTKNMELALMKTYDATPSP 191 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175 ++VI++G+CA GG + + VV G D+I+PVD+Y+PGCPP +Y + K Sbjct: 192 KFVIAVGTCAISGGIFRENEEVVGGVDKILPVDLYIPGCPPHPFTNLYAFVKFFK 246 >gi|282165307|ref|YP_003357692.1| putative [NiFe]-hydrogenase small subunit [Methanocella paludicola SANAE] gi|282157621|dbj|BAI62709.1| putative [NiFe]-hydrogenase small subunit [Methanocella paludicola SANAE] Length = 136 Score = 103 bits (257), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 50/118 (42%), Positives = 72/118 (61%), Gaps = 2/118 (1%) Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 G C +E++ PRYDLER G ASPR +D+++V G + L RVY Q PEP Sbjct: 18 GCVGCDIELLACMGPRYDLERLGIKWVASPRYADILLVTGPVPLHTKPFLERVYAQTPEP 77 Query: 121 RYVISMGSCANGGGYY--HYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKK 176 + VI+MG+C G + +YS+ ++I+PVD+ +PGCPP EA+I GIL + +K Sbjct: 78 KRVIAMGACGTSCGVFIDDENYSIAGPVEKIIPVDVKIPGCPPKPEAIIDGILKVMRK 135 >gi|83591007|ref|YP_431016.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Moorella thermoacetica ATCC 39073] gi|83573921|gb|ABC20473.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Moorella thermoacetica ATCC 39073] Length = 252 Score = 103 bits (256), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 51/122 (41%), Positives = 70/122 (57%), Gaps = 4/122 (3%) Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 G C +E+ P YD ER GF ASPR +D+++ G +T M R Y P+P Sbjct: 31 GCNGCEIEIFATISPVYDPERLGFKVVASPRHADILLFTGPMTRAMRLPAIRAYQAAPDP 90 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYG----ILLLQKK 176 + V++ G+C GG +H YSV G I PVD+Y+PGCPPT A IYG + LLQ+K Sbjct: 91 KIVVAYGTCGCSGGIFHDCYSVWGGTGSIFPVDVYIPGCPPTPGATIYGLGLALDLLQQK 150 Query: 177 IR 178 ++ Sbjct: 151 MK 152 >gi|212223636|ref|YP_002306872.1| NADH dehydrogenase subunit B [Thermococcus onnurineus NA1] gi|212008593|gb|ACJ15975.1| nuoB NADH dehydrogenase I, subunit B [Thermococcus onnurineus NA1] Length = 190 Score = 103 bits (256), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 50/135 (37%), Positives = 77/135 (57%) Query: 44 DQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLT 103 + L +AR SL ++F C +EM RYDLERFG P SPRQ D+ ++ G +T Sbjct: 8 EPLFNYARKKSLWIVSFCTGCGGIEMPPLMTSRYDLERFGMIPDPSPRQYDLFLITGYVT 67 Query: 104 NKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTA 163 K + Y+ P+P+YV++ GSC GG Y +Y+ ++ D+ +PVD+ + GC P Sbjct: 68 PKTLKRIIITYEMAPDPKYVLAHGSCPLNGGIYWDAYNAIKHLDKYIPVDVVIAGCMPRP 127 Query: 164 EALIYGILLLQKKIR 178 EA++ GI + + I Sbjct: 128 EAVMDGIQKIMEMIE 142 >gi|20808124|ref|NP_623295.1| Ni,Fe-hydrogenase III small subunit [Thermoanaerobacter tengcongensis MB4] gi|254479096|ref|ZP_05092449.1| NADH ubiquinone oxidoreductase, 20 Kd subunit family [Carboxydibrachium pacificum DSM 12653] gi|20516711|gb|AAM24899.1| Ni,Fe-hydrogenase III small subunit [Thermoanaerobacter tengcongensis MB4] gi|214034978|gb|EEB75699.1| NADH ubiquinone oxidoreductase, 20 Kd subunit family [Carboxydibrachium pacificum DSM 12653] Length = 247 Score = 103 bits (256), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 48/118 (40%), Positives = 69/118 (58%), Gaps = 4/118 (3%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E+ A P YD ERFG +SPR +D+++ G +T M R Y P+P+ V+ Sbjct: 35 CEIEIFAAISPVYDPERFGIKIVSSPRHADILLFTGPMTRAMRLPAIRAYKAAPDPKIVV 94 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKKIR 178 + G+C GG +H Y V G D+ PVD+Y+PGCPPT A +YG+ LL +KI+ Sbjct: 95 AYGACGCSGGIFHDCYCVWGGIDKFFPVDVYIPGCPPTPAATLYGLAVALDLLHQKIK 152 >gi|269216332|ref|ZP_06160186.1| hydrogenase-4 component I [Slackia exigua ATCC 700122] gi|269130591|gb|EEZ61669.1| hydrogenase-4 component I [Slackia exigua ATCC 700122] Length = 261 Score = 103 bits (256), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 44/112 (39%), Positives = 65/112 (58%) Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 G C +E+ P +D ERFG SPR +D+++ G +T M R Y+ P+P Sbjct: 49 GCNACEIEIFATITPVFDAERFGIKNTPSPRHADILVFTGAVTRAMRLPAMRAYEGAPDP 108 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILL 172 + V+S G+C GG +H +Y V G D+I+PVD+Y+PGCPP+ IYG + Sbjct: 109 KLVVSYGACGCTGGIFHDNYCVWGGTDQILPVDVYIPGCPPSPAQTIYGFAM 160 >gi|295401603|ref|ZP_06811571.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Geobacillus thermoglucosidasius C56-YS93] gi|294976370|gb|EFG51980.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Geobacillus thermoglucosidasius C56-YS93] Length = 247 Score = 103 bits (256), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 47/122 (38%), Positives = 71/122 (58%), Gaps = 4/122 (3%) Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 G C +E+ A P +D ERFG +PR +D++++ G +T M R Y P+P Sbjct: 31 GCNGCEIEIFSAISPTFDAERFGIKVVPTPRHADILLITGPMTRAMRLPAIRAYQAAPDP 90 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176 + V++ G+C+ GG +H Y V G + PVD+Y+PGCPPT A +YG+ LLQ+K Sbjct: 91 KIVVAYGACSCSGGIFHDCYGVWGGAESAFPVDVYIPGCPPTPAATLYGLAMALDLLQQK 150 Query: 177 IR 178 I+ Sbjct: 151 IK 152 >gi|291519870|emb|CBK75091.1| ech hydrogenase subunit C [Butyrivibrio fibrisolvens 16/4] Length = 147 Score = 103 bits (256), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 39/107 (36%), Positives = 72/107 (67%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E++ + P YD+ERFG +P +D+ ++ G + ++ + ++++Y+QMP+P+ VI Sbjct: 21 CDIEVLACTTPVYDVERFGVINTGNPMHADIFLITGGINSQNEAVVKQIYEQMPQPKVVI 80 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171 ++G+CA GG + Y++ G D ++PVDIYVPGC E++I G++ Sbjct: 81 AVGTCACTGGIFKECYNIKGGADTVIPVDIYVPGCAARPESIIDGVV 127 >gi|312110881|ref|YP_003989197.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Geobacillus sp. Y4.1MC1] gi|311215982|gb|ADP74586.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Geobacillus sp. Y4.1MC1] Length = 247 Score = 103 bits (256), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 47/122 (38%), Positives = 71/122 (58%), Gaps = 4/122 (3%) Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 G C +E+ A P +D ERFG +PR +D++++ G +T M R Y P+P Sbjct: 31 GCNGCEIEIFSAISPTFDAERFGIKVVPTPRHADILLITGPMTRAMRLPAIRAYQAAPDP 90 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176 + V++ G+C+ GG +H Y V G + PVD+Y+PGCPPT A +YG+ LLQ+K Sbjct: 91 KIVVAYGACSCSGGIFHDCYGVWGGAESAFPVDVYIPGCPPTPAATLYGLAIALDLLQQK 150 Query: 177 IR 178 I+ Sbjct: 151 IK 152 >gi|198283919|ref|YP_002220240.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Acidithiobacillus ferrooxidans ATCC 53993] gi|218667213|ref|YP_002426553.1| hydrogenase-4, I subunit [Acidithiobacillus ferrooxidans ATCC 23270] gi|198248440|gb|ACH84033.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Acidithiobacillus ferrooxidans ATCC 53993] gi|218519426|gb|ACK80012.1| hydrogenase-4, I subunit [Acidithiobacillus ferrooxidans ATCC 23270] Length = 165 Score = 103 bits (256), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 47/107 (43%), Positives = 69/107 (64%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E+ P Y LE+ GF ASPR +DV+ V G +T M +AL+ ++ PEPR VI Sbjct: 50 CELELNALGGPHYGLEQAGFHFTASPRHADVLTVTGPVTRHMVAALQDCHNATPEPRRVI 109 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171 ++G CA GGG + SY+V+ ++PVD+ +PGCPP +AL+ G+L Sbjct: 110 AVGDCACGGGAFRGSYAVMGSAAEVLPVDLQIPGCPPDPDALLRGLL 156 >gi|158425979|ref|YP_001527271.1| NADH ubiquinone oxidoreductase [Azorhizobium caulinodans ORS 571] gi|158332868|dbj|BAF90353.1| NADH ubiquinone oxidoreductase [Azorhizobium caulinodans ORS 571] gi|211948048|gb|ACJ13747.1| HyqI [Azorhizobium caulinodans ORS 571] Length = 170 Score = 102 bits (255), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 46/112 (41%), Positives = 70/112 (62%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E+ S YDLERFG ASPR +DV++V G +T M AL R Y+ P P++V+ Sbjct: 58 CELEIHALSNAYYDLERFGLRFVASPRHADVLLVTGPVTTNMREALVRTYEATPGPKWVV 117 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKK 176 + GSCA GG + SY+ + ++PVD+ +PGCPP +L+ G++ L ++ Sbjct: 118 AAGSCACDGGLFAQSYACAGAVENVIPVDLRIPGCPPAPLSLLKGLIALLQR 169 >gi|312880265|ref|ZP_07740065.1| Membrane bound hydrogenase subunit mbhJ [Aminomonas paucivorans DSM 12260] gi|310783556|gb|EFQ23954.1| Membrane bound hydrogenase subunit mbhJ [Aminomonas paucivorans DSM 12260] Length = 153 Score = 102 bits (255), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 43/106 (40%), Positives = 70/106 (66%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E++ PRYD+ER G SPR +D ++V G +T+ M ++R++ Q+P+P+ VI Sbjct: 27 CDIEIVATLTPRYDIERLGMKLVGSPRHADALLVTGPVTHYMVERVKRIHAQIPDPKVVI 86 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGI 170 +G+C G ++ SY++ DR++PVD+YV GCPP EA+I G+ Sbjct: 87 CVGNCGCSGDVFYKSYNLEGPVDRVLPVDVYVHGCPPRPEAMIDGV 132 >gi|303241790|ref|ZP_07328286.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Acetivibrio cellulolyticus CD2] gi|302590671|gb|EFL60423.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Acetivibrio cellulolyticus CD2] Length = 154 Score = 102 bits (255), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 43/124 (34%), Positives = 78/124 (62%), Gaps = 4/124 (3%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E++ P YD ERFG +P+ +D+ +V G++ + ++ +Y+QMP+P+ V+ Sbjct: 21 CDIEVLACLTPMYDAERFGIINTGNPKHADIFVVTGSVNEQNIDVIKNLYNQMPDPKVVV 80 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKKIRRV 180 ++G CA GG + Y++ G D+++PVD+YV GC EA+I GI+ +L++K +++ Sbjct: 81 AVGICAATGGIFSECYNIQGGIDKVLPVDVYVAGCAARPEAIIDGIVQAVGILEEKHKKM 140 Query: 181 GNVK 184 N K Sbjct: 141 KNGK 144 >gi|182679430|ref|YP_001833576.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Beijerinckia indica subsp. indica ATCC 9039] gi|182635313|gb|ACB96087.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Beijerinckia indica subsp. indica ATCC 9039] Length = 177 Score = 102 bits (255), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 49/113 (43%), Positives = 70/113 (61%), Gaps = 1/113 (0%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E+ YDLERFG ASPR +DV++V G +T+ M AL R YD P P++V+ Sbjct: 56 CELEINALGNAFYDLERFGLRFVASPRHADVLLVTGPVTHNMREALLRTYDATPNPKWVV 115 Query: 125 SMGSCANGGGYYHYSYSVVR-GCDRIVPVDIYVPGCPPTAEALIYGILLLQKK 176 + G+CA G G + SY+ + G ++ VD+Y+PGCPPT L+ G+L L K Sbjct: 116 AAGTCALGEGVFAESYACQKGGVSAVIAVDLYIPGCPPTPTDLLKGLLALITK 168 >gi|315230620|ref|YP_004071056.1| NADH-ubiquinone oxidoreductase subunit B [Thermococcus barophilus MP] gi|315183648|gb|ADT83833.1| NADH-ubiquinone oxidoreductase chain B [Thermococcus barophilus MP] Length = 190 Score = 102 bits (255), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 49/135 (36%), Positives = 77/135 (57%) Query: 44 DQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLT 103 + L +AR SL + F C +EM RYDLERFG P +PR +D+ ++ G +T Sbjct: 8 EPLFEFARKRSLWIVAFCTGCGGIEMPPLMTSRYDLERFGMMPNPAPRMADLFLITGYVT 67 Query: 104 NKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTA 163 K + Y+ P+P+YV++ GSC GG Y +Y+ ++ D+ +PVD+Y+ GC P Sbjct: 68 PKTLKRIIITYEMQPDPKYVMAHGSCPLNGGIYWDAYNAIKHLDKYIPVDVYIAGCMPRP 127 Query: 164 EALIYGILLLQKKIR 178 EA++ GI + + I Sbjct: 128 EAVMDGIKKIMEMIE 142 >gi|182415924|ref|YP_001820990.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Opitutus terrae PB90-1] gi|177843138|gb|ACB77390.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Opitutus terrae PB90-1] Length = 338 Score = 102 bits (255), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 40/107 (37%), Positives = 67/107 (62%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E + P YD+ER G +P+ +D+ +V G + + +R +Y Q+PEP+ V+ Sbjct: 21 CDIETLACLTPLYDVERLGVINTGNPKHADIFLVTGAVNEQSKEVIRNIYHQLPEPKVVV 80 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171 ++G CA+ GG + Y++ G DR++PVD+YVPGC EA+I G++ Sbjct: 81 AIGVCASSGGIFRDCYNIAGGVDRVIPVDVYVPGCAARPEAIIDGVV 127 >gi|319790466|ref|YP_004152099.1| NADH-quinone oxidoreductase, B subunit [Thermovibrio ammonificans HB-1] gi|317114968|gb|ADU97458.1| NADH-quinone oxidoreductase, B subunit [Thermovibrio ammonificans HB-1] Length = 156 Score = 102 bits (255), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 59/135 (43%), Positives = 81/135 (60%) Query: 45 QLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTN 104 + W+R S + F CC++E++ PR+D ER+GF SPRQ+D +IV G ++ Sbjct: 4 KFFDWSRANSPWGVHFCSGCCSLEVLALMGPRFDWERYGFMMTPSPRQADFIIVTGLVSR 63 Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164 K+ L RVY QMPEPRYV MG+CA GGG Y S V + +P D++V GCPP E Sbjct: 64 KVLPVLLRVYQQMPEPRYVFGMGACAAGGGPYWDSDFVAVDVSQYIPFDVFVAGCPPNPE 123 Query: 165 ALIYGILLLQKKIRR 179 A + G L L++ I R Sbjct: 124 ATLEGFLRLKEIILR 138 >gi|256826557|ref|YP_003150516.1| Ni,Fe-hydrogenase III small subunit [Cryptobacterium curtum DSM 15641] gi|256582700|gb|ACU93834.1| Ni,Fe-hydrogenase III small subunit [Cryptobacterium curtum DSM 15641] Length = 283 Score = 102 bits (254), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 43/112 (38%), Positives = 65/112 (58%) Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 G C +E+ P +D ERFG ASPR +D+++ G +T M R Y+ P+P Sbjct: 68 GCNGCEIEIFGTLTPVFDAERFGIKNMASPRHADILVYTGAVTRAMRLPALRAYEAAPDP 127 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILL 172 + ++S G+C GG +H +Y V G D++ PVD+Y+PGCPP+ IYG + Sbjct: 128 KLIVSYGACGCTGGIFHDNYCVWGGTDKLFPVDVYIPGCPPSPAQTIYGFAM 179 >gi|261368110|ref|ZP_05980993.1| NADH dehydrogenase I, B subunit [Subdoligranulum variabile DSM 15176] gi|282569868|gb|EFB75403.1| NADH dehydrogenase I, B subunit [Subdoligranulum variabile DSM 15176] Length = 152 Score = 102 bits (254), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 39/107 (36%), Positives = 71/107 (66%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E++ + P+YD+ERFG P Q+D++++ G + ++ +R++Y+QMP P+ V+ Sbjct: 21 CDIEVLACTTPKYDIERFGIINTGDPFQADILLITGGVNSQCEGVVRQLYEQMPNPKVVV 80 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171 ++G CA GG + Y++ G D ++PVD+YVPGC +A+I G++ Sbjct: 81 AVGICACTGGVFKDCYNIKGGIDTVIPVDVYVPGCAARPQAIIDGVV 127 >gi|160902353|ref|YP_001567934.1| NADH dehydrogenase subunit B [Petrotoga mobilis SJ95] gi|160359997|gb|ABX31611.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Petrotoga mobilis SJ95] Length = 195 Score = 102 bits (254), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 55/145 (37%), Positives = 81/145 (55%), Gaps = 12/145 (8%) Query: 44 DQLVTWART-----GSLMWMT-FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 D + W + G +WM + C AVE+ R+D+ER G P A+PRQ+DV++ Sbjct: 19 DTITFWEKIKNIFRGKSLWMLHYCTGCGAVELPPTMTARFDMERLGMGPMATPRQADVLL 78 Query: 98 VAGTLTNKMASALRRV---YDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154 + G L+ K LRRV Y+QM P+Y++ GSC GG Y+ SY+V+ D +PVD+ Sbjct: 79 ITGYLSVK---TLRRVIYTYEQMMTPKYLVGFGSCTINGGIYYDSYAVINRLDYYLPVDL 135 Query: 155 YVPGCPPTAEALIYGILLLQKKIRR 179 YV GC P EA++ L+ I + Sbjct: 136 YVAGCMPRPEAIMNTFKTLENMITK 160 >gi|206895842|ref|YP_002247251.1| hydrogenase-4 component I [Coprothermobacter proteolyticus DSM 5265] gi|206738459|gb|ACI17537.1| hydrogenase-4 component I [Coprothermobacter proteolyticus DSM 5265] Length = 157 Score = 102 bits (253), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 44/107 (41%), Positives = 66/107 (61%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E++ A P+YD ERFG SPR +D+++ G +T ++ RV DQ+PEP+ ++ Sbjct: 23 CDIEILAALTPKYDAERFGVKLVGSPRHADIIVATGPVTAVAKESVLRVIDQVPEPKAIV 82 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171 +G C GG + YS+ D +VPVD+YV GCPP E ++ GIL Sbjct: 83 VVGVCGITGGVFRGGYSIAGPLDTLVPVDVYVFGCPPKPEGIMVGIL 129 >gi|332087933|gb|EGI93058.1| hydrogenase-4 component I [Shigella boydii 5216-82] Length = 252 Score = 102 bits (253), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 50/124 (40%), Positives = 71/124 (57%), Gaps = 4/124 (3%) Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 G C +E+ A P +D ERFG +S R +D+++ G +T M R Y+ P+ Sbjct: 43 GCNACEIEIFAAITPVFDAERFGIKVISSLRHADILLFTGAVTRAMRMPALRAYESAPDH 102 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176 + +S G+C GGG +H YSV G D IVP+D+++PGCPPT A I+G LLQ+K Sbjct: 103 KICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHGFAVALGLLQQK 162 Query: 177 IRRV 180 I V Sbjct: 163 IHAV 166 >gi|297567576|ref|YP_003686547.1| hypothetical protein Mesil_3218 [Meiothermus silvanus DSM 9946] gi|297567775|ref|YP_003686746.1| hypothetical protein Mesil_3429 [Meiothermus silvanus DSM 9946] gi|296852025|gb|ADH65039.1| hypothetical protein Mesil_3218 [Meiothermus silvanus DSM 9946] gi|296852224|gb|ADH65238.1| hypothetical protein Mesil_3429 [Meiothermus silvanus DSM 9946] Length = 290 Score = 102 bits (253), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 47/113 (41%), Positives = 74/113 (65%) Query: 68 EMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMG 127 E+ A P +D+ RFGF+ ASPR +D ++V G ++ M AL R Y PEP+ V+++G Sbjct: 144 EVALAGNPFHDMSRFGFSVVASPRHADALLVTGPVSQNMREALWRTYQATPEPKGVVAVG 203 Query: 128 SCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 + A GG + S +VV G D++VPVD+YVPG P ++++G+LLL + ++V Sbjct: 204 NEAIGGEIFAESAAVVGGVDQVVPVDVYVPGSPARPASILHGLLLLSGQTQQV 256 >gi|258514106|ref|YP_003190328.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfotomaculum acetoxidans DSM 771] gi|257777811|gb|ACV61705.1| Hydrogenase, small subunit-like protein [Desulfotomaculum acetoxidans DSM 771] Length = 236 Score = 102 bits (253), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 44/107 (41%), Positives = 69/107 (64%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C E+ + P YD++++G ASPR +D+++V G +T + AL + Y+ P P V+ Sbjct: 124 CDFEINSMTNPVYDIQQYGVDFVASPRHADMLLVTGVVTRNLEIALHKTYEACPRPALVV 183 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171 ++G+CA GGG + +Y+ G D+ +PVD+YVPGCPPT +I GIL Sbjct: 184 AVGACACGGGVFKEAYASGGGVDKFLPVDVYVPGCPPTPAQIIKGIL 230 >gi|288940086|ref|YP_003442326.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Allochromatium vinosum DSM 180] gi|288895458|gb|ADC61294.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Allochromatium vinosum DSM 180] Length = 154 Score = 102 bits (253), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 40/107 (37%), Positives = 70/107 (65%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E++ P YD+ERFG +P+ +D+ +V G++ + + +Y QMP+P+ V+ Sbjct: 21 CDIELLACLTPTYDVERFGIVNTGNPKHADIFLVTGSVNEESRKVVENLYAQMPDPKVVV 80 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171 ++G+CA GG + +Y+V G D+++PVD+YVPGC E++I GI+ Sbjct: 81 AIGACALSGGIFRDAYNVYGGIDQVLPVDVYVPGCAARPESIIDGIV 127 >gi|188996637|ref|YP_001930888.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Sulfurihydrogenibium sp. YO3AOP1] gi|188931704|gb|ACD66334.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Sulfurihydrogenibium sp. YO3AOP1] Length = 173 Score = 101 bits (252), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 44/112 (39%), Positives = 70/112 (62%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C E+ S P YD+ERFG ASP+ +D +++ G LT M A+ + Y+ +P P+++I Sbjct: 57 CEYEISALSNPYYDIERFGVKFVASPKHADAIMITGCLTRNMYEAVMKAYENVPNPKFII 116 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKK 176 ++G CA GG + SY+V+ G +P+DI++ GCPP +I G+L+L K Sbjct: 117 AVGDCALDGGTFKGSYAVMDGIKDKLPIDIWIKGCPPEPIDIISGLLILLNK 168 >gi|57233683|ref|YP_182267.1| hydrogenase, group 4, HycG subunit, putative [Dehalococcoides ethenogenes 195] gi|57224131|gb|AAW39188.1| hydrogenase, group 4, HycG subunit, putative [Dehalococcoides ethenogenes 195] Length = 171 Score = 101 bits (252), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 56/162 (34%), Positives = 91/162 (56%), Gaps = 9/162 (5%) Query: 19 LEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCA-VEMMQASMPRY 77 + K DADF ++ GF + + V + R+ ++ + G A +E+ S P Y Sbjct: 17 MPKGDADFDKL-------GFALKTEIHAV-FGRSLAIRALDSGSDNSAEIELNNLSNPYY 68 Query: 78 DLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137 D+ERFG + ASPR +D++IV G ++ MA A+R+ +D MP P+ VI++G A G Sbjct: 69 DIERFGLSFVASPRHADILIVTGAVSQNMAIAVRKTFDAMPSPKLVIALGDDACGSSIVC 128 Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179 Y V+ G D+I+PVD+ +PG PP +I +L L + + + Sbjct: 129 GGYGVLGGVDKILPVDLKIPGNPPEPIQIITALLGLMRSLGK 170 >gi|256810299|ref|YP_003127668.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanocaldococcus fervens AG86] gi|256793499|gb|ACV24168.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanocaldococcus fervens AG86] Length = 148 Score = 101 bits (252), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 44/118 (37%), Positives = 75/118 (63%), Gaps = 1/118 (0%) Query: 59 TFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMP 118 T G C +E++ PRYD+E++G +PR++DV++V G +T + A L+ +Y++ P Sbjct: 18 TGGCNGCDIEIVSCLAPRYDIEQYGIYVHNNPREADVLLVTGPVTLQWAERLKEIYEKTP 77 Query: 119 EPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKK 176 EP+ V+++G+CA GG + + VV G D+++PVD +PGCPP +I +L + K Sbjct: 78 EPKVVVAVGACALSGGIFKEGH-VVGGVDKVIPVDAKIPGCPPRPSEIIEAVLKVAPK 134 >gi|241753592|ref|XP_002401137.1| NADH-plastoquinone oxidoreductase, putative [Ixodes scapularis] gi|215508356|gb|EEC17810.1| NADH-plastoquinone oxidoreductase, putative [Ixodes scapularis] Length = 162 Score = 101 bits (252), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 44/48 (91%), Positives = 47/48 (97%) Query: 111 RRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPG 158 R+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRI+PVDIYVPG Sbjct: 78 RKVYDQMLEPRWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVPG 125 >gi|294634805|ref|ZP_06713329.1| hydrogenase-4 component I [Edwardsiella tarda ATCC 23685] gi|291091773|gb|EFE24334.1| hydrogenase-4 component I [Edwardsiella tarda ATCC 23685] Length = 205 Score = 101 bits (251), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 48/108 (44%), Positives = 65/108 (60%), Gaps = 4/108 (3%) Query: 75 PRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGG 134 P +D ERFG ASPR +D+++ G +T M R Y P+P+ VIS G+C GG Sbjct: 2 PLFDAERFGIKVVASPRHADILLFTGAVTRAMRVPALRAYQSAPDPKIVISYGACGCSGG 61 Query: 135 YYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKKIR 178 +H Y V G D+IVPVD+Y+PGCPPT A +YG LL +K++ Sbjct: 62 IFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAVALGLLDQKLK 109 >gi|15668695|ref|NP_247494.1| carbon monoxide dehydrogenase hydrogenase subunit CooL [Methanocaldococcus jannaschii DSM 2661] gi|38503282|sp|Q57936|Y516_METJA RecName: Full=Uncharacterized protein MJ0516 gi|2826290|gb|AAB98505.1| carbon monoxide dehydrogenase, hydrogenase subunit CooL (cooL) [Methanocaldococcus jannaschii DSM 2661] Length = 148 Score = 100 bits (250), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 45/118 (38%), Positives = 75/118 (63%), Gaps = 1/118 (0%) Query: 59 TFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMP 118 T G C +E++ PRYD+E++G +PR++DV++V G +T + A L+ +Y++ P Sbjct: 18 TGGCNGCDIEIVACLAPRYDIEQYGIYVHNNPREADVLLVTGPVTLQWAERLKEIYEKTP 77 Query: 119 EPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKK 176 EP+ V+++G+CA GG + + VV G D+++PVD +PGCPP +I IL + K Sbjct: 78 EPKIVVAVGACALSGGIFKEGH-VVGGVDKVIPVDAKIPGCPPRPSEIIETILKVAPK 134 >gi|154244129|ref|YP_001415087.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Xanthobacter autotrophicus Py2] gi|154158214|gb|ABS65430.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Xanthobacter autotrophicus Py2] Length = 170 Score = 100 bits (250), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 45/98 (45%), Positives = 61/98 (62%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E+ YDLERFG ASPR +DV++V G + MA AL+R YD P P++V+ Sbjct: 56 CELEIHALGNAFYDLERFGLHVVASPRHADVLLVTGPVAKNMAEALKRTYDATPSPKWVV 115 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162 + G CA GG + S + G + IVPVD+ +PGCPPT Sbjct: 116 AAGDCAINGGIFAGSSACAGGVEAIVPVDLRIPGCPPT 153 >gi|2127915|pir||D64364 formate hydrogenlyase, subunit 7 - Methanococcus jannaschii Length = 153 Score = 100 bits (250), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 45/118 (38%), Positives = 75/118 (63%), Gaps = 1/118 (0%) Query: 59 TFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMP 118 T G C +E++ PRYD+E++G +PR++DV++V G +T + A L+ +Y++ P Sbjct: 23 TGGCNGCDIEIVACLAPRYDIEQYGIYVHNNPREADVLLVTGPVTLQWAERLKEIYEKTP 82 Query: 119 EPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKK 176 EP+ V+++G+CA GG + + VV G D+++PVD +PGCPP +I IL + K Sbjct: 83 EPKIVVAVGACALSGGIFKEGH-VVGGVDKVIPVDAKIPGCPPRPSEIIETILKVAPK 139 >gi|31580608|gb|AAP51027.1| EchC [Desulfovibrio gigas] Length = 147 Score = 100 bits (250), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 44/112 (39%), Positives = 71/112 (63%), Gaps = 1/112 (0%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E + P FG +P+ +D++IV+GT+ ++ L +Y+QMP P+ V+ Sbjct: 29 CDIETLACLDPHLRRGTFGIVNVGNPKHADILIVSGTVNHRNKKVLANLYEQMPHPKVVV 88 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILL-LQK 175 ++G+C GG + + +VV G D+++PVD YVPGCPP EA+I G++L LQK Sbjct: 89 AIGACGLSGGVFREAPNVVGGIDKVIPVDAYVPGCPPKPEAIIDGVVLGLQK 140 >gi|239616971|ref|YP_002940293.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Kosmotoga olearia TBF 19.5.1] gi|239505802|gb|ACR79289.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Kosmotoga olearia TBF 19.5.1] Length = 137 Score = 100 bits (250), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 45/106 (42%), Positives = 67/106 (63%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E++ PRYDLERFG S R +DV++V G K++ + R+Y+Q P+P +VI Sbjct: 25 CDIEILDMLTPRYDLERFGIKLVGSVRHADVLLVTGMGGCKVSERVIRIYNQAPKPVFVI 84 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGI 170 ++G+C G + SY+ DR VPVD+Y+PGCPP E +I G+ Sbjct: 85 AVGTCPVAGATFKESYTRCGPLDRFVPVDLYIPGCPPKPETMIAGL 130 >gi|83592758|ref|YP_426510.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Rhodospirillum rubrum ATCC 11170] gi|1515468|gb|AAC45118.1| CooL [Rhodospirillum rubrum] gi|83575672|gb|ABC22223.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Rhodospirillum rubrum ATCC 11170] Length = 142 Score = 100 bits (249), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 46/107 (42%), Positives = 71/107 (66%), Gaps = 1/107 (0%) Query: 65 CAVEM-MQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYV 123 C VE+ A +PRYD+ER G SP+ +D+++V G LT ++ + RVY+++P+P+ Sbjct: 25 CDVELATTACIPRYDVERLGCQYCGSPKHADIVLVTGPLTARVKDKVLRVYEEIPDPKVT 84 Query: 124 ISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGI 170 +++G C GG + SYS+V DR +PVD+ VPGCPP +A+I GI Sbjct: 85 VAIGVCPISGGVFRESYSIVGPIDRYLPVDVNVPGCPPRPQAIIEGI 131 >gi|294338744|emb|CAZ87076.1| putative NADH ubiquinone oxidoreductase domain, 20 kDa subunit [Thiomonas sp. 3As] Length = 172 Score = 100 bits (249), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 47/107 (43%), Positives = 67/107 (62%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E+ S P Y++E G ASPR +D+++V G ++ M ALRR YD MPEPR V+ Sbjct: 59 CELEINALSNPYYNIEGLGVHFVASPRHADLLLVTGPVSRHMELALRRTYDAMPEPRLVV 118 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171 + G CA G G + Y+V ++PVD+ VPGCPP+ AL+ GI+ Sbjct: 119 AAGDCAAGCGVHSQGYAVCGRVAEVLPVDVTVPGCPPSPVALLQGIM 165 >gi|289191770|ref|YP_003457711.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanocaldococcus sp. FS406-22] gi|288938220|gb|ADC68975.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanocaldococcus sp. FS406-22] Length = 148 Score = 100 bits (249), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 44/118 (37%), Positives = 75/118 (63%), Gaps = 1/118 (0%) Query: 59 TFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMP 118 T G C +E++ PRYD+E++G +PR++DV+++ G +T + A L+ +Y++ P Sbjct: 18 TGGCNGCDIEIVACLAPRYDIEQYGIYVHNNPREADVLLITGPVTLQWAERLKEIYEKTP 77 Query: 119 EPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKK 176 EP+ V+++G+CA GG + + VV G D+++PVD +PGCPP +I IL + K Sbjct: 78 EPKIVVAVGACALSGGIFKEGH-VVGGVDKVIPVDAKIPGCPPRPSEIIETILKVAPK 134 >gi|303243875|ref|ZP_07330215.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanothermococcus okinawensis IH1] gi|302485811|gb|EFL48735.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanothermococcus okinawensis IH1] Length = 251 Score = 100 bits (249), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 46/115 (40%), Positives = 68/115 (59%) Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 G C ++ + P YDL RFG ASPR +D ++V G +T M AL + Y+ +P P Sbjct: 137 GCNACDADVNVLNTPVYDLSRFGIKFAASPRHADGLVVTGPITKNMELALMKTYNAIPSP 196 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175 + VI++G+CA GG + + VV G D+I+PVD+Y+PGCPP +Y + K Sbjct: 197 KCVIAVGACAISGGLFRENEEVVGGVDKILPVDLYIPGCPPHPFTNLYAFVKFFK 251 >gi|163785059|ref|ZP_02179780.1| hypothetical protein HG1285_04403 [Hydrogenivirga sp. 128-5-R1-1] gi|159879672|gb|EDP73455.1| hypothetical protein HG1285_04403 [Hydrogenivirga sp. 128-5-R1-1] Length = 171 Score = 100 bits (248), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 44/115 (38%), Positives = 71/115 (61%), Gaps = 1/115 (0%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C E+ S P YD+ERFG ASP+ +D +++ G +T M A+ R Y+ +PEP++VI Sbjct: 57 CEYEISALSNPYYDVERFGIKFVASPKHADAIMITGCMTRNMYKAVLRAYENVPEPKFVI 116 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL-LLQKKIR 178 ++G C GG + SY+ + G +PVD+++ GCPP +I G+L L+++K Sbjct: 117 AVGDCVLDGGVFKGSYATIDGVQDKLPVDVWIKGCPPEPIDIISGVLKLIEEKFE 171 >gi|210631897|ref|ZP_03297109.1| hypothetical protein COLSTE_00999 [Collinsella stercoris DSM 13279] gi|210159822|gb|EEA90793.1| hypothetical protein COLSTE_00999 [Collinsella stercoris DSM 13279] Length = 228 Score = 100 bits (248), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 44/119 (36%), Positives = 72/119 (60%), Gaps = 4/119 (3%) Query: 57 WMTF--GLAC--CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRR 112 W+ G +C C +E++ + MP YD+ERFG +P+ +D+ +V G++ + +R Sbjct: 9 WLIHYDGSSCNGCDIEVLDSMMPLYDIERFGIINTGNPKHADIFLVTGSVNAQNIEVVRH 68 Query: 113 VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171 +YDQM EP+ V++ G CA GG + Y+V+ G D+ +PVD+Y PGC E +I +L Sbjct: 69 IYDQMLEPKVVVACGICACTGGVFRDCYNVIGGVDKAIPVDVYAPGCAVRPETIIDAVL 127 >gi|307353199|ref|YP_003894250.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanoplanus petrolearius DSM 11571] gi|307156432|gb|ADN35812.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanoplanus petrolearius DSM 11571] Length = 171 Score = 100 bits (248), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 57/172 (33%), Positives = 94/172 (54%), Gaps = 9/172 (5%) Query: 9 KIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCA-V 67 K+I + +E D+DF R S + + + SV + R+ ++ + G A + Sbjct: 7 KLIQKPLTERIEVNDSDFERYGSMLKAE---INSV-----FKRSIAIREVDCGSDNAAEI 58 Query: 68 EMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMG 127 E+ S P YD+ERFG ASPR +DV+ V G +T+ M AL++ YD P P++V+++G Sbjct: 59 EINNLSSPYYDVERFGVTFVASPRHADVLFVTGAVTHNMRYALKKTYDATPSPKFVVAIG 118 Query: 128 SCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179 A GG + SY++ +VPVD+ +PG PP +I +L L K+ ++ Sbjct: 119 DEACNGGIFKDSYAICGPVSSVVPVDLEIPGNPPEPVDMIKSLLALMKEAKK 170 >gi|220930729|ref|YP_002507638.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Clostridium cellulolyticum H10] gi|220001057|gb|ACL77658.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Clostridium cellulolyticum H10] Length = 149 Score = 100 bits (248), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 39/107 (36%), Positives = 69/107 (64%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E + P YD ER G +P+ +D+++V G++ + L+ +Y+QMP+P+ V+ Sbjct: 25 CDIETLACLTPMYDAERLGIINVGNPKHADILLVTGSVNKRNELVLKNIYNQMPDPKCVV 84 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171 ++G+CA GG + Y+V+ G + ++PVD++VPGC EA+I GI+ Sbjct: 85 AIGACACTGGIFKECYNVLGGVENVIPVDVFVPGCCARPEAIIDGIV 131 >gi|126465960|ref|YP_001041069.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Staphylothermus marinus F1] gi|126014783|gb|ABN70161.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Staphylothermus marinus F1] Length = 159 Score = 100 bits (248), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 48/125 (38%), Positives = 77/125 (61%), Gaps = 10/125 (8%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E++ A P +D+ERFG ASPR +D++++ G +T K + +P PRYV+ Sbjct: 25 CDIEILDALTPYFDVERFGIKLVASPRHADLVLLTGPITLKTLPKVINALRAVPRPRYVM 84 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRI--------VPVD--IYVPGCPPTAEALIYGILLLQ 174 ++G+CA GGG ++ SYSV+ G D + + +D +YVPGCP EA+IYG+ LL Sbjct: 85 AIGACAVGGGIWYDSYSVIGGVDELKKILEEYGIEIDKIVYVPGCPARPEAIIYGVALLL 144 Query: 175 KKIRR 179 +++ Sbjct: 145 GLVKQ 149 >gi|326202291|ref|ZP_08192160.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Clostridium papyrosolvens DSM 2782] gi|325987409|gb|EGD48236.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Clostridium papyrosolvens DSM 2782] Length = 149 Score = 99.8 bits (247), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 39/107 (36%), Positives = 69/107 (64%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E + P YD ER G +P+ +D+++V G++ + L+ +Y+QMP+P+ V+ Sbjct: 25 CDIETLACLTPLYDAERLGIINVGNPKHADILLVTGSVNKRNEIVLKNIYNQMPDPKCVV 84 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171 ++G+CA GG + Y+V+ G + ++PVD++VPGC EA+I GI+ Sbjct: 85 AIGACACTGGIFRECYNVLGGVENVIPVDVFVPGCCARPEAIIDGIV 131 >gi|154150665|ref|YP_001404283.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Candidatus Methanoregula boonei 6A8] gi|153999217|gb|ABS55640.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Methanoregula boonei 6A8] Length = 172 Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 46/109 (42%), Positives = 70/109 (64%) Query: 67 VEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISM 126 +E+ S YD+ERFG + ASPR +DV++V G +T MA A ++ YD MP P++V+++ Sbjct: 58 IEINNLSNAYYDVERFGISFVASPRHADVLLVTGAITCNMAIAAQKTYDAMPSPKFVVAV 117 Query: 127 GSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175 G A GG Y +Y+V+ G D I PVD+ +PG PP ++ G+L L + Sbjct: 118 GDDACDGGIYKGTYAVLGGADAIFPVDLKIPGNPPAPIQILTGLLALMR 166 >gi|295105899|emb|CBL03442.1| ech hydrogenase subunit C [Gordonibacter pamelaeae 7-10-1-b] Length = 147 Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 43/118 (36%), Positives = 73/118 (61%), Gaps = 4/118 (3%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E++ A P YD+ERFG +P+ +D+ +V G++ + ++ +Y+QM EP+ VI Sbjct: 21 CDIEVLAALCPGYDVERFGIINTGNPKHADIFLVTGSVNEQNIKVVQEIYNQMVEPKVVI 80 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALI----YGILLLQKKIR 178 + G CA G +H Y+V+ G D+ +PVD+Y PGC EA+I G+ +L++K + Sbjct: 81 ACGICACSAGIFHDCYNVIGGVDQAIPVDVYAPGCAVRPEAIIDAVVQGLGILEEKSK 138 >gi|240102300|ref|YP_002958608.1| formate hydrogenlyase I subunit H (Mhy1H) [Thermococcus gammatolerans EJ3] gi|239909853|gb|ACS32744.1| formate hydrogenlyase I subunit H (Mhy1H) [Thermococcus gammatolerans EJ3] Length = 277 Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 50/132 (37%), Positives = 81/132 (61%), Gaps = 18/132 (13%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQM-PEPRYV 123 C +E++ P YDLER G +PR +D + + G LT + AL++ Y+ M P+PR V Sbjct: 22 CDIEVLDVLSPYYDLERLGVKVVPNPRHADALFITGPLTRQTRIALKKAYEAMPPKPRIV 81 Query: 124 ISMGSCANGGGYYHYSYSVV-----RGCDR--------IVPVDIYVPGCPPTAEALIYGI 170 +++G+CA+ GG ++ SY++ RG DR IVP+D+Y+PGCPP+ E ++YG+ Sbjct: 82 VAVGTCASSGGIFYNSYALYNTSPQRGRDRLRSGGPEMIVPIDMYIPGCPPSPEEILYGV 141 Query: 171 LLL----QKKIR 178 L +KK++ Sbjct: 142 AQLLGIKEKKMK 153 >gi|220905144|ref|YP_002480456.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219869443|gb|ACL49778.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 149 Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 44/109 (40%), Positives = 71/109 (65%), Gaps = 1/109 (0%) Query: 65 CAVEM-MQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYV 123 C VE+ A +PRYD+ER G SPR +D++++ G LT ++ + RV+D++PEP+ Sbjct: 28 CDVELATTACIPRYDVERLGCRYCGSPRHADIVLITGPLTTRVRDRVLRVWDEIPEPKVT 87 Query: 124 ISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILL 172 +++G C GG + YS+ DR +PVD+ VPGCPP +A++ G++L Sbjct: 88 VAVGICPISGGVFREGYSIEGPIDRYLPVDVNVPGCPPRPQAILEGVVL 136 >gi|296134448|ref|YP_003641695.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Thermincola sp. JR] gi|296033026|gb|ADG83794.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Thermincola potens JR] Length = 143 Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 46/108 (42%), Positives = 71/108 (65%), Gaps = 1/108 (0%) Query: 65 CAVEMMQASM-PRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYV 123 C VE+ ++ PRYD+ER G SP+ +D+++V G LT K+ + RVYD++P+P+ V Sbjct: 26 CDVELATTALIPRYDVERLGCKYCGSPKHADIVLVTGPLTAKVKDKVLRVYDEIPDPKVV 85 Query: 124 ISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171 +++G C GG + SY+V D +PVD+ VPGCPP +A+I GI+ Sbjct: 86 VAVGICPVSGGVFRDSYAVHGPVDSYIPVDVNVPGCPPRPQAIIDGIV 133 >gi|218888275|ref|YP_002437596.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218759229|gb|ACL10128.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 146 Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 44/108 (40%), Positives = 70/108 (64%), Gaps = 1/108 (0%) Query: 65 CAVEM-MQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYV 123 C VE+ A +PRYD+ER G SPR +D++++ G LT ++ + RV+D++PEP+ Sbjct: 25 CDVELATTACIPRYDVERLGCKYCGSPRHADIVLITGPLTARVKDKVLRVWDEIPEPKVT 84 Query: 124 ISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171 +++G C GG + YS+ DR +PVD+ VPGCPP +A+I G++ Sbjct: 85 VAVGICPVSGGVFRDGYSIEGPIDRYIPVDVNVPGCPPRPQAIIEGVI 132 >gi|226327309|ref|ZP_03802827.1| hypothetical protein PROPEN_01176 [Proteus penneri ATCC 35198] gi|225204527|gb|EEG86881.1| hypothetical protein PROPEN_01176 [Proteus penneri ATCC 35198] Length = 172 Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 42/101 (41%), Positives = 62/101 (61%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E+ A P +D ERFG ASPR +D+++ G +T +M R Y+ P+P+ I Sbjct: 50 CEIEIFSAITPVFDAERFGIKVVASPRHADILLFTGAVTRQMRVPALRAYESAPDPKICI 109 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEA 165 S G+C GGG +H Y V G + IVP+D+++PGCPP A + Sbjct: 110 SYGACGCGGGIFHDLYCVWGGSESIVPIDVWIPGCPPNASS 150 >gi|14521670|ref|NP_127146.1| hydrogenase-4 component i [Pyrococcus abyssi GE5] gi|5458889|emb|CAB50376.1| Hydrogenase 4, component I or formate hydrogen lyase, subunit 7 [Pyrococcus abyssi GE5] Length = 271 Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 47/123 (38%), Positives = 76/123 (61%), Gaps = 14/123 (11%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQM-PEPRYV 123 C +E++ P YDLER G +PR +D +++ G LT + A+++ Y+ M P+PR V Sbjct: 20 CDIEVLDVLTPYYDLERLGIKVVPNPRHADALLITGPLTRQTRMAIKKAYEAMPPKPRIV 79 Query: 124 ISMGSCANGGGYYHYSYSVV-----RGCDR--------IVPVDIYVPGCPPTAEALIYGI 170 +++G+CA GG ++ SY++ RG DR +VPVD+Y+PGCPP+ E ++YG+ Sbjct: 80 VAIGTCACSGGIFYNSYALYNTSPERGRDRLRSGGIEMVVPVDMYIPGCPPSPEEILYGL 139 Query: 171 LLL 173 L Sbjct: 140 AQL 142 >gi|242399881|ref|YP_002995306.1| Membrane-bound NADP+-reducing complex MBX, subunit MbxJ (dehydrogenase subunit) [Thermococcus sibiricus MM 739] gi|242266275|gb|ACS90957.1| Membrane-bound NADP+-reducing complex MBX, subunit MbxJ (dehydrogenase subunit) [Thermococcus sibiricus MM 739] Length = 193 Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 46/127 (36%), Positives = 73/127 (57%) Query: 44 DQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLT 103 + L+ +AR S+ + F C +EM RYDLERFG P +PR +D+ ++ G +T Sbjct: 8 EPLINFARKRSMWIVAFCTGCGGIEMPPLMTSRYDLERFGMMPNPAPRMADLFLITGYVT 67 Query: 104 NKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTA 163 K + Y+ P+P+YV++ GSC GG Y Y+ ++ D+ +PVD+ + GC P Sbjct: 68 PKTLKRIIITYEMQPDPKYVLAHGSCPLNGGIYWDGYNAIKHLDKYLPVDVAIAGCMPRP 127 Query: 164 EALIYGI 170 EA++ GI Sbjct: 128 EAVMDGI 134 >gi|53804774|ref|YP_113607.1| hydrogenase subunit [Methylococcus capsulatus str. Bath] gi|53758535|gb|AAU92826.1| hydrogenase subunit [Methylococcus capsulatus str. Bath] Length = 169 Score = 99.0 bits (245), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 43/109 (39%), Positives = 69/109 (63%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E+ P YD+ER+G ASPR +DV++V G ++ M +AL+ ++ PEP++V+ Sbjct: 58 CELEIAALGNPFYDIERYGVHFVASPRHADVLMVTGPVSRHMQAALQATWEATPEPKWVV 117 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLL 173 ++GSCA GG + +Y+ ++PVD +PGCPPT L+ G+L L Sbjct: 118 AVGSCAADGGEFGVNYASCGAVGNVLPVDAVIPGCPPTPTDLVRGLLSL 166 >gi|301167470|emb|CBW27053.1| putative NADH-quinone oxidoreductase chain B [Bacteriovorax marinus SJ] Length = 172 Score = 99.0 bits (245), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 43/139 (30%), Positives = 84/139 (60%), Gaps = 2/139 (1%) Query: 41 TSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAG 100 T +++ W T S + TF ACC+ E +Y + F F R + SD++I++G Sbjct: 29 TFIERFHNWVNTHSTVPFTFATACCSSEYYSIFDDQYPEDNF-FPERVEAQNSDLLIISG 87 Query: 101 TLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCP 160 ++ K L+ +Y +MP+ ++V+ +G+C GG + S+++V + +PVDI++PGCP Sbjct: 88 SVNLKTYPLLKDIYKEMPKDKWVVVIGACPMSGGPFS-SFNIVPDISKDIPVDIFIPGCP 146 Query: 161 PTAEALIYGILLLQKKIRR 179 P+ + + +G+ LL++++R+ Sbjct: 147 PSPKEIAHGMSLLKERMRK 165 >gi|289549193|ref|YP_003474181.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Thermocrinis albus DSM 14484] gi|289182810|gb|ADC90054.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Thermocrinis albus DSM 14484] Length = 163 Score = 99.0 bits (245), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 44/115 (38%), Positives = 67/115 (58%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C VE+ P Y +E FG ASP+ +DV++V G +T M +AL++ YD P P++VI Sbjct: 44 CEVEVAALGNPHYSIESFGIRFVASPKHADVLLVTGCVTRNMLTALKKAYDNTPSPKWVI 103 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179 ++G C ++ SYSV + +PV ++VPGCPP +I G + L I+R Sbjct: 104 TVGDCTESCPFFKDSYSVEGPVSKHIPVHLHVPGCPPEPSEIISGFIRLMNLIQR 158 >gi|237757076|ref|ZP_04585519.1| NADH-quinone oxidoreductase, chain 6 [Sulfurihydrogenibium yellowstonense SS-5] gi|237690765|gb|EEP59930.1| NADH-quinone oxidoreductase, chain 6 [Sulfurihydrogenibium yellowstonense SS-5] Length = 97 Score = 98.6 bits (244), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 42/70 (60%), Positives = 59/70 (84%), Gaps = 1/70 (1%) Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164 K+A LR +Y+QMP+P++VISMG CA+GGG + +YS ++G DRI+PVD+Y+PGCPPT + Sbjct: 1 KVAPMLRLIYEQMPDPKWVISMGGCASGGGPFP-TYSTLQGVDRIIPVDVYIPGCPPTPQ 59 Query: 165 ALIYGILLLQ 174 AL++GIL LQ Sbjct: 60 ALLWGILELQ 69 >gi|296242761|ref|YP_003650248.1| NADH dehydrogenase 30 kDa subunit [Thermosphaera aggregans DSM 11486] gi|296095345|gb|ADG91296.1| NADH dehydrogenase (ubiquinone) 30 kDa subunit [Thermosphaera aggregans DSM 11486] Length = 339 Score = 98.6 bits (244), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 52/135 (38%), Positives = 75/135 (55%) Query: 43 VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL 102 +D+LV WAR+ S+ + + AC AVE M D ER+G+ P SPRQSD+ + G L Sbjct: 4 LDKLVRWARSRSIWMIHYCSACGAVEFPPLVMSPLDWERYGYMPAPSPRQSDLYVGMGYL 63 Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162 T K +Y Q+PEPR+V + +C GG Y SY+ + D V V+ +VPGC P Sbjct: 64 TKKTVKLFLNMYRQVPEPRFVAAGCNCTATGGLYWDSYATYKRLDEFVEVEGWVPGCMPM 123 Query: 163 AEALIYGILLLQKKI 177 + + L++KI Sbjct: 124 PDDYFSLLEHLRRKI 138 >gi|312113082|ref|YP_004010678.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Rhodomicrobium vannielii ATCC 17100] gi|311218211|gb|ADP69579.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Rhodomicrobium vannielii ATCC 17100] Length = 175 Score = 98.6 bits (244), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 44/109 (40%), Positives = 65/109 (59%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E+ P YD+ERFG ASPR +DV++V G ++ M L R Y P+P++V+ Sbjct: 58 CELEIHALGNPVYDVERFGLKFVASPRHADVLLVTGAVSWNMREGLERTYAATPDPKWVV 117 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLL 173 + G CA G G + S + +I+PVD+ +PGCPPT L+ G+L L Sbjct: 118 AAGDCAAGCGVFAESRACAGAVAKIIPVDLVIPGCPPTPTDLLKGLLAL 166 >gi|258593559|emb|CBE69900.1| HycG protein [NC10 bacterium 'Dutch sediment'] Length = 172 Score = 98.6 bits (244), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 47/107 (43%), Positives = 65/107 (60%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E+ + P YDLERFG ASPR +D ++V G +T MA L+R YD P+P+ V+ Sbjct: 59 CELEIGALNNPYYDLERFGMHFVASPRHADCLLVTGPVTRNMADPLKRTYDATPDPKIVV 118 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171 ++G CA G + Y VV IVPVD+ V GCPP+ ++ GIL Sbjct: 119 AVGDCARDCGIFAGGYGVVGPVSAIVPVDVVVGGCPPSPSMILAGIL 165 >gi|257791323|ref|YP_003181929.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Eggerthella lenta DSM 2243] gi|317490460|ref|ZP_07948942.1| NADH ubiquinone oxidoreductase [Eggerthella sp. 1_3_56FAA] gi|325831504|ref|ZP_08164758.1| NADH ubiquinone oxidoreductase, 20 Kd subunit [Eggerthella sp. HGA1] gi|257475220|gb|ACV55540.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Eggerthella lenta DSM 2243] gi|316910453|gb|EFV32080.1| NADH ubiquinone oxidoreductase [Eggerthella sp. 1_3_56FAA] gi|325486758|gb|EGC89206.1| NADH ubiquinone oxidoreductase, 20 Kd subunit [Eggerthella sp. HGA1] Length = 147 Score = 98.6 bits (244), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 42/118 (35%), Positives = 73/118 (61%), Gaps = 4/118 (3%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E++ A P +D+ERFG +P+ +D+ +V G++ + ++ +Y+QM EP+ VI Sbjct: 21 CDIEVLAALCPGFDVERFGIINTGNPKHADIFLVTGSVNEQNIGVVQEIYNQMVEPKVVI 80 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALI----YGILLLQKKIR 178 + G CA G +H Y+V+ G D+ +PVD+Y PGC EA+I G+ +L++K + Sbjct: 81 ACGICACSAGIFHDCYNVIGGVDQAIPVDVYAPGCAVRPEAIIDAVVQGLGILEEKSK 138 >gi|78043938|ref|YP_360650.1| carbon monoxide-induced hydrogenase subunit CooL [Carboxydothermus hydrogenoformans Z-2901] gi|77996053|gb|ABB14952.1| carbon monoxide-induced hydrogenase, CooL subunit [Carboxydothermus hydrogenoformans Z-2901] Length = 143 Score = 98.6 bits (244), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 42/108 (38%), Positives = 70/108 (64%), Gaps = 1/108 (0%) Query: 65 CAVEM-MQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYV 123 C VE+ A +PRYD+ER G SP+ +D++++ G LT ++ + R+Y+++PEP+ Sbjct: 26 CDVELATTACIPRYDVERLGCKYCGSPKHADIVLITGPLTARVKEKVLRLYEEIPEPKVT 85 Query: 124 ISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171 +++G C GG + SY++ D +PVD+ VPGCPP +A+I GI+ Sbjct: 86 VAIGVCPISGGVFRDSYAITGPIDNFIPVDVNVPGCPPRPQAIIDGII 133 >gi|254173148|ref|ZP_04879821.1| hydrogenase-4 component i [Thermococcus sp. AM4] gi|214032557|gb|EEB73386.1| hydrogenase-4 component i [Thermococcus sp. AM4] Length = 276 Score = 98.2 bits (243), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 49/132 (37%), Positives = 80/132 (60%), Gaps = 18/132 (13%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQM-PEPRYV 123 C +E++ P YDLER G +PR +D + + G LT + L++ Y+ M P+PR V Sbjct: 21 CDIEVLDVLSPYYDLERLGIKVVPNPRHADALFITGPLTRQTRIMLKKAYEAMPPKPRIV 80 Query: 124 ISMGSCANGGGYYHYSYSVV-----RGCDR--------IVPVDIYVPGCPPTAEALIYGI 170 +++G+CA+ GG ++ SY++ RG DR IVP+D+Y+PGCPP+ E ++YG+ Sbjct: 81 VAIGTCASSGGIFYNSYALYNTSPQRGRDRLRSGGPEMIVPIDMYIPGCPPSPEEILYGV 140 Query: 171 LLL----QKKIR 178 L +KK++ Sbjct: 141 AQLLGIKEKKMK 152 >gi|255525491|ref|ZP_05392428.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Clostridium carboxidivorans P7] gi|296188576|ref|ZP_06856964.1| 4Fe-4S binding domain protein [Clostridium carboxidivorans P7] gi|255510856|gb|EET87159.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Clostridium carboxidivorans P7] gi|296046840|gb|EFG86286.1| 4Fe-4S binding domain protein [Clostridium carboxidivorans P7] Length = 242 Score = 98.2 bits (243), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 44/113 (38%), Positives = 70/113 (61%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E+ YDL R+G ASPR +D ++V G +T M AL + YD + +P+ VI Sbjct: 127 CMMEVSNTQNTYYDLSRYGIKFAASPRHADGIVVTGPVTLNMKEALIKTYDAISDPKIVI 186 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 ++GSCA GG + YSV + I+ V++ +PGCPP+ +A++YG+L + K+ Sbjct: 187 AVGSCAYSGGIFKDGYSVCEDLNEILKVNLVIPGCPPSPQAILYGMLKIINKL 239 >gi|296109961|ref|YP_003616910.1| hypothetical protein Metin_1296 [Methanocaldococcus infernus ME] gi|295434775|gb|ADG13946.1| hypothetical protein Metin_1296 [Methanocaldococcus infernus ME] Length = 146 Score = 98.2 bits (243), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 50/141 (35%), Positives = 83/141 (58%), Gaps = 4/141 (2%) Query: 48 TWARTGSL---MWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTN 104 T+ R SL + T G C VE++ PRYDLE++G +PR++D+++V+G +T Sbjct: 3 TFFRKRSLHLCLINTGGCNGCDVEVLSCLAPRYDLEQYGIYFHNNPREADILVVSGPVTL 62 Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164 + ++ +Y+++PEP+ VI++G+CA GG + ++ +G I+PVD VPGCPP Sbjct: 63 QWKERIKELYEKVPEPKIVIALGACALSGGIFKEGHT-CKGVLNILPVDAKVPGCPPKPA 121 Query: 165 ALIYGILLLQKKIRRVGNVKC 185 +I IL + K+ KC Sbjct: 122 EIIKAILKVAPKLIAEREKKC 142 >gi|325294933|ref|YP_004281447.1| NADH dehydrogenase (quinone) [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065381|gb|ADY73388.1| NADH dehydrogenase (quinone) [Desulfurobacterium thermolithotrophum DSM 11699] Length = 182 Score = 98.2 bits (243), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 51/126 (40%), Positives = 79/126 (62%), Gaps = 4/126 (3%) Query: 55 LMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVY 114 L + T C VE++ P+YD+ERFG R +P+QSD+++V G +T + L R+Y Sbjct: 14 LHYNTGSCNGCDVEILACLAPKYDIERFGILNRGNPKQSDILLVTGPVTKRARERLIRLY 73 Query: 115 DQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL--- 171 +MPEP+ V+++G CA GG + Y+V G D+ +PVD+YVPGC E +I G++ Sbjct: 74 MEMPEPKVVVAVGVCACTGGVFRGMYNVENGVDKFIPVDVYVPGCAARPENIIDGVVRAL 133 Query: 172 -LLQKK 176 +L+KK Sbjct: 134 EILEKK 139 >gi|224099657|ref|XP_002334455.1| predicted protein [Populus trichocarpa] gi|222872368|gb|EEF09499.1| predicted protein [Populus trichocarpa] Length = 97 Score = 97.8 bits (242), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 42/93 (45%), Positives = 64/93 (68%) Query: 41 TSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAG 100 T+ + L W+R SL + +G +CC +E R+D +R+G PR+SPRQ+D+++ AG Sbjct: 5 TTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAG 64 Query: 101 TLTNKMASALRRVYDQMPEPRYVISMGSCANGG 133 T+T KMA +L R+Y+QMPE +YVI+MG+C G Sbjct: 65 TVTMKMAPSLVRLYEQMPEQKYVIAMGACTITG 97 >gi|261402604|ref|YP_003246828.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanocaldococcus vulcanius M7] gi|261369597|gb|ACX72346.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanocaldococcus vulcanius M7] Length = 152 Score = 97.8 bits (242), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 42/118 (35%), Positives = 74/118 (62%), Gaps = 1/118 (0%) Query: 59 TFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMP 118 T G C +E++ PRYD+E++G +PR++DV+++ G +T + A L+ +Y++ P Sbjct: 18 TGGCNGCDIEIVSCLSPRYDIEQYGIYVHNNPREADVLLITGPVTLQWAERLKEIYEKTP 77 Query: 119 EPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKK 176 EP+ V+++G+CA GG + + V+ G +++PVD +PGCPP +I IL + K Sbjct: 78 EPKVVVAVGACALSGGIFKEGH-VIGGVHKVIPVDAKIPGCPPRPSEIIETILKVAPK 134 >gi|270308816|ref|YP_003330874.1| hydrogenase, HycG subunit [Dehalococcoides sp. VS] gi|270154708|gb|ACZ62546.1| hydrogenase, HycG subunit [Dehalococcoides sp. VS] Length = 171 Score = 97.8 bits (242), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 45/113 (39%), Positives = 70/113 (61%) Query: 67 VEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISM 126 +E+ S P YD+ERFG + ASPR +D++IV G ++ MA A+R+ +D MP P+ VI++ Sbjct: 58 IELNNLSNPYYDIERFGISFVASPRHADILIVTGAVSQNMAIAVRKTFDAMPSPKLVIAL 117 Query: 127 GSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179 G A G G Y V+ G D+I+ VD+ +PG PP +I +L L + + + Sbjct: 118 GDDACGNGIVCSGYGVLGGVDKILLVDLKIPGNPPEPIQIITALLGLMRSLGK 170 >gi|90422453|ref|YP_530823.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Rhodopseudomonas palustris BisB18] gi|90104467|gb|ABD86504.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Rhodopseudomonas palustris BisB18] Length = 174 Score = 97.4 bits (241), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 42/97 (43%), Positives = 63/97 (64%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E+ S YD+ERFG ASPR +DV++V G +T M AL+ Y+ P P++V+ Sbjct: 58 CELEIHALSNAYYDVERFGIRFVASPRHADVLLVTGPVTKNMRDALKATYEATPSPKWVV 117 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP 161 ++G CA GG + SY+V G ++PVD+++PGCPP Sbjct: 118 ALGDCAKDGGCFAASYAVEGGVSAVIPVDLHIPGCPP 154 >gi|139437055|ref|ZP_01771215.1| Hypothetical protein COLAER_00190 [Collinsella aerofaciens ATCC 25986] gi|133776702|gb|EBA40522.1| Hypothetical protein COLAER_00190 [Collinsella aerofaciens ATCC 25986] Length = 260 Score = 97.4 bits (241), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 45/122 (36%), Positives = 71/122 (58%), Gaps = 4/122 (3%) Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 G C +E+ + P +D+ERFG SPR +DV++ G +T M R ++ P+P Sbjct: 48 GCNGCEIEIFGSITPVFDVERFGIKVVPSPRHADVLLYTGAVTRAMRMPALRAFEAAPDP 107 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176 + V+S G+C GG ++ +Y V G D+I+PVD+Y+PGCPP+ +YG LL +K Sbjct: 108 KIVVSYGACGCTGGIFYDNYCVWGGTDKILPVDVYIPGCPPSPAQTVYGFAMALGLLDQK 167 Query: 177 IR 178 + Sbjct: 168 LH 169 >gi|303325626|ref|ZP_07356069.1| carbon monoxide-induced hydrogenase, CooL subunit [Desulfovibrio sp. 3_1_syn3] gi|302863542|gb|EFL86473.1| carbon monoxide-induced hydrogenase, CooL subunit [Desulfovibrio sp. 3_1_syn3] Length = 149 Score = 97.1 bits (240), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 43/109 (39%), Positives = 70/109 (64%), Gaps = 1/109 (0%) Query: 65 CAVEM-MQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYV 123 C VE+ A +PRYD+ER G SPR +D++++ G LT ++ + RV+ ++PEP+ Sbjct: 28 CDVELATTACIPRYDVERLGCKYCGSPRHADIVLITGPLTTRVRDRVLRVWHEIPEPKVT 87 Query: 124 ISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILL 172 +++G C GG + YS+ DR +PVD+ VPGCPP +A++ G++L Sbjct: 88 VAVGICPISGGVFREGYSIEGPIDRYLPVDVNVPGCPPRPQAILEGVVL 136 >gi|90425976|ref|YP_534346.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Rhodopseudomonas palustris BisB18] gi|90107990|gb|ABD90027.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Rhodopseudomonas palustris BisB18] Length = 144 Score = 97.1 bits (240), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 43/109 (39%), Positives = 71/109 (65%), Gaps = 1/109 (0%) Query: 65 CAVEM-MQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYV 123 C VE+ A +PRYD+ER G SP+ +D++++ G LT ++ + RV+D++P+P+ Sbjct: 27 CDVELATTACIPRYDVERLGCQYCGSPKHADIVLITGPLTARVKDRVLRVFDEIPDPKVT 86 Query: 124 ISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILL 172 +++G C GG + SY++ DR +PVD+ VPGCPP +A+I GI + Sbjct: 87 VAIGICPISGGVFRESYAIEGPIDRYLPVDVNVPGCPPRPQAIIEGIAM 135 >gi|157954631|gb|ABW05548.1| formate hydrogenlyase subunit H [Thermococcus litoralis DSM 5473] Length = 256 Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 48/127 (37%), Positives = 76/127 (59%), Gaps = 16/127 (12%) Query: 63 AC--CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQM-PE 119 AC C +E++ P YD+ER G ++PR + ++V G LT + + +R Y+ M P+ Sbjct: 15 ACNGCDIEILDVLTPYYDVERLGVKLVSTPRHAHALLVTGPLTRQSYYSAKRAYEAMPPK 74 Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRI-------------VPVDIYVPGCPPTAEAL 166 PR VI++G+CA GG ++ SY+V R +R+ +PVD+Y+PGCPP E + Sbjct: 75 PRIVIAIGTCACSGGIFYNSYAVRRESERLGLEYPRAGGTSEFLPVDVYIPGCPPRPEEI 134 Query: 167 IYGILLL 173 +YG+ LL Sbjct: 135 LYGLALL 141 >gi|147920954|ref|YP_685238.1| [NiFe]-hydrogenase, small subunit (EchC-like) [uncultured methanogenic archaeon RC-I] gi|110620634|emb|CAJ35912.1| [NiFe]-hydrogenase, small subunit (EchC-like) [uncultured methanogenic archaeon RC-I] Length = 135 Score = 96.7 bits (239), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 47/113 (41%), Positives = 69/113 (61%), Gaps = 2/113 (1%) Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 G C +E++ + PRYDLER G SPR +DV++V G + L RVY Q PEP Sbjct: 17 GCVGCDIELVASMGPRYDLERLGVRLVPSPRYADVLLVTGPVPLHTKPFLERVYAQTPEP 76 Query: 121 RYVISMGSCANGGGYY--HYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171 + VI++G+C G + +YS+ D+I+PVD+ +PGCPP EA++ GI+ Sbjct: 77 KRVIAIGACGCSCGVFIDDENYSIAGPVDKIIPVDVKIPGCPPKPEAIMEGII 129 >gi|256827153|ref|YP_003151112.1| ech hydrogenase subunit C [Cryptobacterium curtum DSM 15641] gi|256583296|gb|ACU94430.1| ech hydrogenase subunit C [Cryptobacterium curtum DSM 15641] Length = 181 Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 41/116 (35%), Positives = 72/116 (62%), Gaps = 4/116 (3%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E++ A P +D ERFG +P+ +D+++V G++ + ++ +Y+QM EP+ V+ Sbjct: 21 CDIEVLAALCPGFDAERFGVINTGNPKHADILLVTGSVNERNIKVVQELYNQMIEPKAVV 80 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176 + G CA GG +H Y+V+ G + VPVD+Y PGC EA+I ++ +L++K Sbjct: 81 ACGCCACTGGVFHDCYNVIGGVENAVPVDVYAPGCAIRPEAIIDAVVEAVGILEEK 136 >gi|121534188|ref|ZP_01666013.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Thermosinus carboxydivorans Nor1] gi|121307291|gb|EAX48208.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Thermosinus carboxydivorans Nor1] Length = 143 Score = 95.9 bits (237), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 41/108 (37%), Positives = 70/108 (64%), Gaps = 1/108 (0%) Query: 65 CAVEM-MQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYV 123 C VE+ A +PRYD+ER G SP+ +D++++ G LT ++ + R+Y+++P+P+ Sbjct: 26 CDVELATTACIPRYDVERLGCKYCGSPKHADIVLITGPLTVRVKEKVLRLYEEIPDPKVT 85 Query: 124 ISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171 +++G C GG + SY++ D +PVD+ VPGCPP +A+I GI+ Sbjct: 86 VAIGVCPISGGVFRDSYAIAGPIDNFIPVDVNVPGCPPRPQAIIDGII 133 >gi|317126126|ref|YP_004100238.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Intrasporangium calvum DSM 43043] gi|315590214|gb|ADU49511.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Intrasporangium calvum DSM 43043] Length = 157 Score = 95.5 bits (236), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 43/103 (41%), Positives = 64/103 (62%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E++ A P YDLER+G ASPR +DV++V G +T MA LR+ Y+ MP P+ V+ Sbjct: 46 CELEIVSAFGPVYDLERYGVRLVASPRHADVLLVTGPVTRNMADPLRKAYEAMPAPKLVV 105 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALI 167 ++G CA G + +Y V ++PVD + GCPP+ E +I Sbjct: 106 ALGDCARNCGIFAGAYGVFGAVSDVIPVDREISGCPPSPEEII 148 >gi|78223793|ref|YP_385540.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Geobacter metallireducens GS-15] gi|78195048|gb|ABB32815.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Geobacter metallireducens GS-15] Length = 244 Score = 95.5 bits (236), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 48/118 (40%), Positives = 68/118 (57%) Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 G C + S +DL RFG ASPR +D + V G +T MA AL Y+ +P+P Sbjct: 126 GCNACEADTNVLSTIGWDLGRFGIQFVASPRHADGLWVTGPVTEHMAKALLTTYEAIPDP 185 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 + V++ G+CA GG Y + V G D IVPVD+Y+PGCPP ++ G+L + KI+ Sbjct: 186 KIVVACGACAINGGPYIDTPQVCNGVDSIVPVDLYIPGCPPHPATILDGLLRILNKIK 243 >gi|120602015|ref|YP_966415.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Desulfovibrio vulgaris DP4] gi|120562244|gb|ABM27988.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Desulfovibrio vulgaris DP4] Length = 144 Score = 95.1 bits (235), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 42/108 (38%), Positives = 68/108 (62%), Gaps = 1/108 (0%) Query: 65 CAVEM-MQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYV 123 C VE+ A +PRYD+ER G SPR +D++++ G LT ++ + RV+D++P P+ Sbjct: 25 CDVELATTACIPRYDVERLGCKYCGSPRHADIVLITGPLTARVKDKVLRVWDEIPAPKIT 84 Query: 124 ISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171 +++G C GG + Y + DR +P+DI VPGCPP +A+I G++ Sbjct: 85 VAVGICPVSGGVFRDGYPIEGPLDRYIPIDINVPGCPPRPQAIIEGVV 132 >gi|139439383|ref|ZP_01772824.1| Hypothetical protein COLAER_01843 [Collinsella aerofaciens ATCC 25986] gi|133775162|gb|EBA38982.1| Hypothetical protein COLAER_01843 [Collinsella aerofaciens ATCC 25986] Length = 195 Score = 95.1 bits (235), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 43/123 (34%), Positives = 73/123 (59%), Gaps = 6/123 (4%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E++ + P +D ERFG +P+ +D+ +V G++ + +R++Y+QM EP+ V+ Sbjct: 22 CDIEVLASLTPLFDAERFGVVNTGNPKHADIFLVTGSVNAQNLPVVRQIYNQMLEPKCVV 81 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALI------YGILLLQKKIR 178 + G CA GG + +Y+V+ G DR +PVD+Y PGC E +I GIL ++ + Sbjct: 82 ACGICACSGGVFRDAYNVIGGVDRAIPVDVYAPGCAIRPETVIDAIVEACGILDQKEAVM 141 Query: 179 RVG 181 R G Sbjct: 142 RAG 144 >gi|46580693|ref|YP_011501.1| hydrogenase subunit CooL [Desulfovibrio vulgaris str. Hildenborough] gi|46450112|gb|AAS96761.1| hydrogenase, CooL subunit, putative [Desulfovibrio vulgaris str. Hildenborough] gi|311234412|gb|ADP87266.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfovibrio vulgaris RCH1] Length = 144 Score = 95.1 bits (235), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 42/108 (38%), Positives = 68/108 (62%), Gaps = 1/108 (0%) Query: 65 CAVEM-MQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYV 123 C VE+ A +PRYD+ER G SPR +D++++ G LT ++ + RV+D++P P+ Sbjct: 25 CDVELATTACIPRYDVERLGCKYCGSPRHADIVLITGPLTARVKDKVLRVWDEIPAPKIT 84 Query: 124 ISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171 +++G C GG + Y + DR +P+DI VPGCPP +A+I G++ Sbjct: 85 VAVGICPVSGGVFRDGYPIEGPLDRYIPIDINVPGCPPRPQAIIEGVV 132 >gi|89671|pir||PX0053 NADH2 dehydrogenase (ubiquinone) (EC 1.6.5.3) 20K chain - bovine (fragments) Length = 96 Score = 95.1 bits (235), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 45/54 (83%), Positives = 48/54 (88%), Gaps = 4/54 (7%) Query: 110 LRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTA 163 L +VYDQMPEPRYV+SMGSCANGGGYYHYSYSVV RIVPVDIYVPGCPP + Sbjct: 36 LIKVYDQMPEPRYVVSMGSCANGGGYYHYSYSVV----RIVPVDIYVPGCPPAS 85 >gi|212704287|ref|ZP_03312415.1| hypothetical protein DESPIG_02342 [Desulfovibrio piger ATCC 29098] gi|212672249|gb|EEB32732.1| hypothetical protein DESPIG_02342 [Desulfovibrio piger ATCC 29098] Length = 149 Score = 95.1 bits (235), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 42/112 (37%), Positives = 71/112 (63%), Gaps = 1/112 (0%) Query: 65 CAVEM-MQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYV 123 C VE+ A +PRYD+ER G SPR +D++++ G LT ++ + V++++PEP+ Sbjct: 28 CDVELATTACIPRYDVERLGCRYCGSPRHADIVLITGPLTTRVRDRVLAVWNEIPEPKIT 87 Query: 124 ISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175 +++G C GG + YS+ R +PVD+ VPGCPP +A++ G++L +K Sbjct: 88 VAVGICPISGGVFREGYSIEGPISRYIPVDVNVPGCPPRPQAILEGVVLARK 139 >gi|110289458|gb|AAP54717.2| NAD, putative [Oryza sativa Japonica Group] Length = 141 Score = 94.7 bits (234), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 42/75 (56%), Positives = 57/75 (76%), Gaps = 1/75 (1%) Query: 106 MASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPVDIYVPGCPPTAE 164 MA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++PVD+Y+PGCPP E Sbjct: 1 MAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPE 60 Query: 165 ALIYGILLLQKKIRR 179 A+I + L+KKI R Sbjct: 61 AVIDALTKLRKKISR 75 >gi|288961341|ref|YP_003451680.1| NADH dehydrogenase I chain B [Azospirillum sp. B510] gi|288913649|dbj|BAI75136.1| NADH dehydrogenase I chain B [Azospirillum sp. B510] Length = 163 Score = 94.4 bits (233), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 41/107 (38%), Positives = 69/107 (64%), Gaps = 1/107 (0%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E+ PRYD E+ G +P+ +D+++++GTLT + A+ +YDQ+P P+ V+ Sbjct: 29 CDIEITPLLSPRYDAEQLGIELHGTPKHADIVLISGTLTLRSRQAILDIYDQVPSPKAVV 88 Query: 125 SMGSCANGGGYYHYSYSVV-RGCDRIVPVDIYVPGCPPTAEALIYGI 170 ++GSC G + S V+ + D +VPVD++VPGCPP +A++ GI Sbjct: 89 ALGSCPLSGNVFAGSPLVLGQSLDSLVPVDVWVPGCPPRPQAILDGI 135 >gi|258653154|ref|YP_003202310.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Nakamurella multipartita DSM 44233] gi|258556379|gb|ACV79321.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Nakamurella multipartita DSM 44233] Length = 162 Score = 94.0 bits (232), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 45/112 (40%), Positives = 65/112 (58%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C VE+ A P YD ER+G ASPR +D ++V G +T MA LRR Y +P+P+ V+ Sbjct: 51 CEVEIGAAFGPVYDAERYGARLVASPRHADALLVTGVVTRNMAQPLRRTYQAVPDPKLVV 110 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKK 176 ++G CA G + + V IVPVD+ +PGCPP E ++ G+ L + Sbjct: 111 AVGDCARTCGVFRGAPGVAGAVGDIVPVDLEIPGCPPRPEDIVAGLRKLTGR 162 >gi|297837947|ref|XP_002886855.1| hypothetical protein ARALYDRAFT_475566 [Arabidopsis lyrata subsp. lyrata] gi|297840985|ref|XP_002888374.1| hypothetical protein ARALYDRAFT_475599 [Arabidopsis lyrata subsp. lyrata] gi|297332696|gb|EFH63114.1| hypothetical protein ARALYDRAFT_475566 [Arabidopsis lyrata subsp. lyrata] gi|297334215|gb|EFH64633.1| hypothetical protein ARALYDRAFT_475599 [Arabidopsis lyrata subsp. lyrata] Length = 141 Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 43/75 (57%), Positives = 57/75 (76%), Gaps = 1/75 (1%) Query: 106 MASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPVDIYVPGCPPTAE 164 MA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++PVD+Y+PGCPP E Sbjct: 1 MAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPE 60 Query: 165 ALIYGILLLQKKIRR 179 A+I I L+KKI R Sbjct: 61 AVIDAITKLRKKIAR 75 >gi|317485983|ref|ZP_07944838.1| NADH ubiquinone oxidoreductase [Bilophila wadsworthia 3_1_6] gi|316922756|gb|EFV43987.1| NADH ubiquinone oxidoreductase [Bilophila wadsworthia 3_1_6] Length = 144 Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 41/108 (37%), Positives = 69/108 (63%), Gaps = 1/108 (0%) Query: 65 CAVEM-MQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYV 123 C VE+ A + RYD+ER G SPR +D++++ G LT ++ + RV++++PEP+ Sbjct: 25 CDVELATTACISRYDVERLGCKYCGSPRHADIVLITGPLTARVKDKVLRVWNEIPEPKVT 84 Query: 124 ISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171 +++G C GG + YS+ DR +P+D+ VPGCPP +A++ G+L Sbjct: 85 VAVGICPISGGVFREGYSIEGPVDRYLPIDVNVPGCPPRPQAIMEGVL 132 >gi|88603006|ref|YP_503184.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Methanospirillum hungatei JF-1] gi|88188468|gb|ABD41465.1| ech hydrogenase subunit C [Methanospirillum hungatei JF-1] Length = 148 Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 39/116 (33%), Positives = 69/116 (59%), Gaps = 4/116 (3%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E++ P YD+ERFG +P+ +D+ ++ G + + +Y+QMP P+ V+ Sbjct: 21 CDIEVLACLTPLYDVERFGILNTGNPKHADIFVITGGVNEINKEVVLNIYEQMPHPKVVV 80 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176 ++G CA GG + Y++ G ++PVD+YVPGC E++I GI+ +L++K Sbjct: 81 AVGICACSGGVFRECYNISGGVATVIPVDVYVPGCAARPESIIDGIVQALGILEQK 136 >gi|91786823|ref|YP_547775.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Polaromonas sp. JS666] gi|91696048|gb|ABE42877.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Polaromonas sp. JS666] Length = 181 Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 45/117 (38%), Positives = 69/117 (58%), Gaps = 1/117 (0%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E+ + P Y++E G ASPR +D+++V G ++ M ALRR YD PEP+ V+ Sbjct: 57 CELEIHALNNPYYNIEGLGIKFVASPRHADMLLVTGPVSRHMDEALRRTYDATPEPKLVV 116 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181 ++G C GG + SY+ ++PVD+ VPGCPP ++ GIL ++ RR G Sbjct: 117 AVGDCGCTGGIFGDSYASCGRVANVIPVDVTVPGCPPPPIEILRGILTAVRQ-RRPG 172 >gi|150399523|ref|YP_001323290.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanococcus vannielii SB] gi|150012226|gb|ABR54678.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanococcus vannielii SB] Length = 159 Score = 93.2 bits (230), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 41/113 (36%), Positives = 68/113 (60%), Gaps = 1/113 (0%) Query: 59 TFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMP 118 T G C +E++ PRYD+E++G +PR++DV++V G +T L +Y++ P Sbjct: 21 TGGCNGCDIEIVSTLAPRYDIEQYGIYVHNNPREADVLVVTGPVTGAWEKRLLELYEKTP 80 Query: 119 EPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171 EP+ V+S+G+CA GG + + + D+I+PVD +PGCPP +I I+ Sbjct: 81 EPKIVVSIGACALSGGIFKEGH-IFGPVDKIIPVDAKLPGCPPRPSEIISAIV 132 >gi|186470860|ref|YP_001862178.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Burkholderia phymatum STM815] gi|184197169|gb|ACC75132.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Burkholderia phymatum STM815] Length = 176 Score = 93.2 bits (230), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 43/107 (40%), Positives = 65/107 (60%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E+ + P Y++E G ASPR +D+++V G LT M A+RRV+ P P+ V+ Sbjct: 58 CELEIHALNNPYYNIEGLGIRFVASPRHADMLLVTGPLTLNMKEAVRRVWQATPHPKLVV 117 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171 + G CA GG + SY+V ++PVD+ +PGCPP+ L+ GIL Sbjct: 118 AAGDCACTGGIFRDSYAVCGPPSNLLPVDVAIPGCPPSPFDLLTGIL 164 >gi|289641804|ref|ZP_06473961.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Frankia symbiont of Datisca glomerata] gi|289508329|gb|EFD29271.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Frankia symbiont of Datisca glomerata] Length = 160 Score = 93.2 bits (230), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 45/112 (40%), Positives = 65/112 (58%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E+ A P YD ER+G ASPR +DV++V G +T MA LRR + P PR VI Sbjct: 49 CEIEIAAAFGPVYDAERYGARVVASPRHADVLLVTGPVTRNMAEPLRRTVEATPRPRLVI 108 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKK 176 ++G CA G + Y V +VPVD+ VPGCPP +A++ + + ++ Sbjct: 109 AVGDCALNCGEFAGGYGVQGPVADVVPVDLQVPGCPPEPDAIVAALRTVTRR 160 >gi|148260403|ref|YP_001234530.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Acidiphilium cryptum JF-5] gi|146402084|gb|ABQ30611.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Acidiphilium cryptum JF-5] Length = 167 Score = 93.2 bits (230), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 41/101 (40%), Positives = 62/101 (61%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E++ YDLERFG ASPR +DV++V G +T M++A R Y+ MP P++V+ Sbjct: 57 CELEIIALGNVLYDLERFGLKLVASPRHADVLLVTGPMTRNMSAATRLAYEAMPAPKFVV 116 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEA 165 ++G C GG + S + G ++PV + +PGCPPT A Sbjct: 117 AVGDCGRDGGVFAASPHCLGGTASVLPVTLTIPGCPPTPAA 157 >gi|325578545|ref|ZP_08148645.1| hydrogenase-4 component I [Haemophilus parainfluenzae ATCC 33392] gi|325159781|gb|EGC71911.1| hydrogenase-4 component I [Haemophilus parainfluenzae ATCC 33392] Length = 258 Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 51/122 (41%), Positives = 71/122 (58%), Gaps = 4/122 (3%) Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 G C +E+ P +D ERFG ASPR +D+++ G +T M + R Y P+P Sbjct: 46 GCNGCEIEIFSTITPTFDAERFGIKVVASPRHADILLFTGAVTRAMRTPAMRAYQAAPDP 105 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176 + I+ G+C GGG +H Y V G D+IVPVD+Y+PGCPPT A IYG LL +K Sbjct: 106 KICIAYGACGCGGGIFHDLYCVWGGSDQIVPVDVYIPGCPPTPAATIYGFAVALGLLDQK 165 Query: 177 IR 178 ++ Sbjct: 166 LK 167 >gi|301156407|emb|CBW15878.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit [Haemophilus parainfluenzae T3T1] Length = 258 Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 51/122 (41%), Positives = 71/122 (58%), Gaps = 4/122 (3%) Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 G C +E+ P +D ERFG ASPR +D+++ G +T M + R Y P+P Sbjct: 46 GCNGCEIEIFSTITPTFDAERFGIKVVASPRHADILLFTGAVTRAMRTPAMRAYQAAPDP 105 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176 + I+ G+C GGG +H Y V G D+IVPVD+Y+PGCPPT A IYG LL +K Sbjct: 106 KICIAYGACGCGGGIFHDLYCVWGGSDQIVPVDVYIPGCPPTPAATIYGFAVALGLLDQK 165 Query: 177 IR 178 ++ Sbjct: 166 LK 167 >gi|251792877|ref|YP_003007603.1| hydrogenase-4 subunit I [Aggregatibacter aphrophilus NJ8700] gi|247534270|gb|ACS97516.1| hydrogenase-4 component I [Aggregatibacter aphrophilus NJ8700] Length = 258 Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 51/122 (41%), Positives = 72/122 (59%), Gaps = 4/122 (3%) Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 G C +E+ P +D ERFG ASPR +D+++ G++T M + R Y P+P Sbjct: 46 GCNGCEIEIFSTITPVFDAERFGIKVVASPRHADILLFTGSVTRAMRTPAMRAYQAAPDP 105 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176 + I+ G+C GGG +H Y V G D+IVPVD+Y+PGCPPT A IYG LL +K Sbjct: 106 KICIAYGACGCGGGIFHDLYCVWGGSDQIVPVDVYIPGCPPTPAATIYGFAMALGLLDQK 165 Query: 177 IR 178 ++ Sbjct: 166 LK 167 >gi|77554378|gb|ABA97174.1| NAD, putative [Oryza sativa Japonica Group] Length = 141 Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 41/75 (54%), Positives = 56/75 (74%), Gaps = 1/75 (1%) Query: 106 MASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPVDIYVPGCPPTAE 164 MA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++PVD+Y+P CPP E Sbjct: 1 MAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPSCPPKPE 60 Query: 165 ALIYGILLLQKKIRR 179 A+I + L+KKI R Sbjct: 61 AVIDALTKLRKKISR 75 >gi|91780242|ref|YP_555449.1| putative hydrogenase/oxidoreductase subunit [Burkholderia xenovorans LB400] gi|91692902|gb|ABE36099.1| Putative hydrogenase/oxidoreductase subunit [Burkholderia xenovorans LB400] Length = 175 Score = 92.4 bits (228), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 42/107 (39%), Positives = 65/107 (60%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E+ + P Y+LE G ASPR +D+++V G LT M A+R Y+ P+P+ V+ Sbjct: 57 CELEIHALNNPYYNLEGLGIRFVASPRHADMLLVTGPLTVNMTEAVRLAYEATPDPKLVV 116 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171 + G CA GG + SY+V +++PVD+ +PGCPP ++ GIL Sbjct: 117 ATGECACTGGMFKESYAVCGPLAKLLPVDVTIPGCPPPPLDILRGIL 163 >gi|224370960|ref|YP_002605124.1| HyfI [Desulfobacterium autotrophicum HRM2] gi|223693677|gb|ACN16960.1| HyfI [Desulfobacterium autotrophicum HRM2] Length = 258 Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 43/101 (42%), Positives = 61/101 (60%) Query: 77 YDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY 136 +DL RFG ASPR +D ++V G +T M +AL++ YD +P P+ VI+ G+CA GG Y Sbjct: 158 WDLARFGIDFVASPRHADGLLVTGPVTRNMETALKKTYDALPSPKIVIATGACAISGGPY 217 Query: 137 HYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 G D I+PVD+Y+PGCPP ++ +L KI Sbjct: 218 AGHAQQHNGVDAILPVDLYIPGCPPHPFTILEALLCYLGKI 258 >gi|296166652|ref|ZP_06849078.1| NADH-ubiquinone oxidoreductase [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295897987|gb|EFG77567.1| NADH-ubiquinone oxidoreductase [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 159 Score = 92.0 bits (227), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 45/112 (40%), Positives = 62/112 (55%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C VE+ A P YD ERFG ASPR +D ++V G +T+ MA LR + P PR VI Sbjct: 48 CEVEIAGAFGPVYDAERFGARLVASPRHADALLVTGVVTHNMAGPLRTTIEATPRPRRVI 107 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKK 176 + G CA G + +Y V +VPVD+ +PGCPPT ++ + + K Sbjct: 108 ACGDCAIDRGVFGDAYGVAGAVGEVVPVDVEIPGCPPTPAQIVAALRSVTGK 159 >gi|326403595|ref|YP_004283677.1| putative NADH ubiquinone oxidoreductase [Acidiphilium multivorum AIU301] gi|325050457|dbj|BAJ80795.1| putative NADH ubiquinone oxidoreductase [Acidiphilium multivorum AIU301] Length = 167 Score = 92.0 bits (227), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 40/101 (39%), Positives = 61/101 (60%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E++ YDLERFG ASPR +DV++ G +T M++A R Y+ MP P++V+ Sbjct: 57 CELEIIALGNVLYDLERFGLKLVASPRHADVLLATGPMTRNMSAATRLAYEAMPAPKFVV 116 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEA 165 ++G C GG + S + G ++PV + +PGCPPT A Sbjct: 117 AVGDCGRDGGVFAASPHCLGGTASVLPVTLTIPGCPPTPAA 157 >gi|288818462|ref|YP_003432810.1| Ni-Fe hydrogenase small subunit/NADH ubiquinone oxidoreductase 20 kD subunit [Hydrogenobacter thermophilus TK-6] gi|288787862|dbj|BAI69609.1| Ni-Fe hydrogenase small subunit/NADH ubiquinone oxidoreductase 20 kD subunit [Hydrogenobacter thermophilus TK-6] gi|308752052|gb|ADO45535.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Hydrogenobacter thermophilus TK-6] Length = 155 Score = 92.0 bits (227), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 46/141 (32%), Positives = 75/141 (53%), Gaps = 3/141 (2%) Query: 36 KGFLVTSVDQLVTWARTGSLMWM---TFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 + F V + D V + SL T C +E+ + P YD+ERFG ASP+ Sbjct: 7 RSFRVKTEDLKVKHKKVISLFIREVDTGSCNACEIEVANLNNPYYDVERFGIKFVASPKH 66 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 +DV+++ G +T M + + Y+ P P++V+++G C Y+ SY+V + +PV Sbjct: 67 ADVLLITGCVTRNMLIPMIKAYENAPAPKFVLTVGDCTAECPYFKDSYAVEGPVSKHLPV 126 Query: 153 DIYVPGCPPTAEALIYGILLL 173 ++VPGCPP +I G+L L Sbjct: 127 HVHVPGCPPEPAQVIEGLLKL 147 >gi|78708331|gb|ABB47306.1| NAD, putative [Oryza sativa Japonica Group] Length = 141 Score = 91.7 bits (226), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 41/75 (54%), Positives = 56/75 (74%), Gaps = 1/75 (1%) Query: 106 MASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPVDIYVPGCPPTAE 164 MA +L R+Y+QMPEP+YVI+MG+C GG + SYS VR D+++PVD+Y+PGCPP E Sbjct: 1 MAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRRVDKLIPVDVYLPGCPPKPE 60 Query: 165 ALIYGILLLQKKIRR 179 A+I + L+KKI R Sbjct: 61 AVIDALTKLRKKISR 75 >gi|258541876|ref|YP_003187309.1| NADH-ubiquinone oxidoreductase 20 kDa subunit [Acetobacter pasteurianus IFO 3283-01] gi|256632954|dbj|BAH98929.1| NADH-ubiquinone oxidoreductase 20 kDa subunit [Acetobacter pasteurianus IFO 3283-01] gi|256636011|dbj|BAI01980.1| NADH-ubiquinone oxidoreductase 20 kDa subunit [Acetobacter pasteurianus IFO 3283-03] gi|256639066|dbj|BAI05028.1| NADH-ubiquinone oxidoreductase 20 kDa subunit [Acetobacter pasteurianus IFO 3283-07] gi|256642120|dbj|BAI08075.1| NADH-ubiquinone oxidoreductase 20 kDa subunit [Acetobacter pasteurianus IFO 3283-22] gi|256645175|dbj|BAI11123.1| NADH-ubiquinone oxidoreductase 20 kDa subunit [Acetobacter pasteurianus IFO 3283-26] gi|256648230|dbj|BAI14171.1| NADH-ubiquinone oxidoreductase 20 kDa subunit [Acetobacter pasteurianus IFO 3283-32] gi|256651283|dbj|BAI17217.1| NADH-ubiquinone oxidoreductase 20 kDa subunit [Acetobacter pasteurianus IFO 3283-01-42C] gi|256654274|dbj|BAI20201.1| NADH-ubiquinone oxidoreductase 20 kDa subunit [Acetobacter pasteurianus IFO 3283-12] Length = 165 Score = 91.7 bits (226), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 44/118 (37%), Positives = 68/118 (57%) Query: 59 TFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMP 118 T G C +E+ YD+E GF SPR +DV+++ G LT MA L + MP Sbjct: 35 TGGCGGCGMELQALRYAPYDMEGAGFGFVTSPRNADVLLITGALTRAMAPVLEAAWQAMP 94 Query: 119 EPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKK 176 P+ +I++GSCA GG + +Y+V+ G +R V +D+ +PGCPP + ++ G+ L K Sbjct: 95 TPKGLIAVGSCALDGGMFPENYTVLGGLERRVSIDLKIPGCPPAPQDVLNGLCSLFGK 152 >gi|329114352|ref|ZP_08243114.1| Formate hydrogenlyase subunit 7 [Acetobacter pomorum DM001] gi|326696428|gb|EGE48107.1| Formate hydrogenlyase subunit 7 [Acetobacter pomorum DM001] Length = 165 Score = 91.3 bits (225), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 44/118 (37%), Positives = 68/118 (57%) Query: 59 TFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMP 118 T G C +E+ YD+E GF SPR +DV+++ G LT MA L + MP Sbjct: 35 TGGCGGCGMELQALRYAPYDMEGAGFGFVTSPRNADVLLITGALTRAMAPVLEAAWQAMP 94 Query: 119 EPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKK 176 P+ +I++GSCA GG + +Y+V+ G +R V +D+ +PGCPP + ++ G+ L K Sbjct: 95 TPKGLIAVGSCALDGGMFPENYTVLGGLERRVSIDLKIPGCPPAPQDVLNGLCSLFGK 152 >gi|295673893|ref|XP_002797492.1| NADH-ubiquinone oxidoreductase 20 kDa subunit [Paracoccidioides brasiliensis Pb01] gi|226280142|gb|EEH35708.1| NADH-ubiquinone oxidoreductase 20 kDa subunit [Paracoccidioides brasiliensis Pb01] Length = 159 Score = 91.3 bits (225), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 53/129 (41%), Positives = 70/129 (54%), Gaps = 12/129 (9%) Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87 RISS I+ + S+D++V WAR GSL ++FGLACC +EMM SMPRYD +R G R Sbjct: 27 RISSLISLQEEKNGSIDKVVNWAREGSLWPLSFGLACCNMEMMAVSMPRYDQDRLGTIFR 86 Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCD 147 ASPRQSDV+IVA +T + PR ++ G G Y S + Sbjct: 87 ASPRQSDVIIVADAVTKQDG------------PRLAVTRGQVRGQAGSSRYLCSELSSNG 134 Query: 148 RIVPVDIYV 156 R + + YV Sbjct: 135 RDIALSDYV 143 >gi|167839774|ref|ZP_02466458.1| Formate hydrogenlyase subunit 7 [Burkholderia thailandensis MSMB43] Length = 174 Score = 91.3 bits (225), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 44/114 (38%), Positives = 66/114 (57%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E+ P Y++E G ASPR +D++++ G LT M A+R YD P P+ V+ Sbjct: 57 CELELHALGNPYYNIEGLGIKFVASPRHADMLLITGPLTLNMRDAVRLAYDATPAPKLVV 116 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 + G CA GG + SY+V + +VPVDI +PGCPP L+ GI +++R Sbjct: 117 AAGDCACTGGVFAGSYAVCGPVETLVPVDIAIPGCPPRPLDLLRGIRSALERVR 170 >gi|2665481|gb|AAB88386.1| formate hydrogenlyase subunit 7 [Methanococcus maripaludis] Length = 147 Score = 91.3 bits (225), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 46/131 (35%), Positives = 81/131 (61%), Gaps = 8/131 (6%) Query: 55 LMWMTFGLACCAVEMMQASM-PRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRV 113 ++ T G C +E++ + P YD E++ +PR++DV++V G +T ++++L+++ Sbjct: 14 MLVYTGGCNGCDIEVVNCVLSPFYDAEQYNVFLTWNPREADVLVVTGCVTKAVSASLKKI 73 Query: 114 YDQMPEPRYVISMGSCANGGGYYHY------SYSVVRG-CDRIVPVDIYVPGCPPTAEAL 166 YD++PEP+ V++ G+CA GG Y+ + + + G + I+PVDI VPGCPP E + Sbjct: 74 YDEIPEPKAVVAAGACALMGGVYNNIGADLGTSTFIDGPVENIIPVDIKVPGCPPRPEDV 133 Query: 167 IYGILLLQKKI 177 I GI+ KI Sbjct: 134 ITGIVKALPKI 144 >gi|219670289|ref|YP_002460724.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfitobacterium hafniense DCB-2] gi|219540549|gb|ACL22288.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfitobacterium hafniense DCB-2] Length = 155 Score = 91.3 bits (225), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 43/123 (34%), Positives = 67/123 (54%), Gaps = 5/123 (4%) Query: 57 WMTFGLAC-----CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALR 111 W L C C EM P YDL+RFG ASPR +D+++ G ++ + A Sbjct: 33 WHIRHLDCGSCNGCDWEMSALLNPIYDLQRFGLDFVASPRHADILMCTGPMSTHLIQAAL 92 Query: 112 RVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171 Y+ P P+ +I++G CA GG + +Y+ G ++PVDI +PGCPP+ + L+ +L Sbjct: 93 ATYEGTPNPKKIIAVGDCALDGGMFKEAYAAHNGVGEVLPVDIKIPGCPPSPDELLKVLL 152 Query: 172 LLQ 174 L+ Sbjct: 153 QLK 155 >gi|159905433|ref|YP_001549095.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanococcus maripaludis C6] gi|159886926|gb|ABX01863.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanococcus maripaludis C6] Length = 147 Score = 91.3 bits (225), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 47/131 (35%), Positives = 81/131 (61%), Gaps = 8/131 (6%) Query: 55 LMWMTFGLACCAVEMMQASM-PRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRV 113 ++ T G C +E++ + P YD E++ +PR++DV++V G +T ++++L+++ Sbjct: 14 MLVYTGGCNGCDIEVVNCVLSPFYDAEQYNVFLTWNPREADVLVVTGCVTKAVSASLKKI 73 Query: 114 YDQMPEPRYVISMGSCANGGGYYHY------SYSVVRG-CDRIVPVDIYVPGCPPTAEAL 166 YD++PEP+ VI+ G+CA GG Y+ + + V G + I+PVD+ VPGCPP E + Sbjct: 74 YDEIPEPKAVIAAGACALMGGVYNNIGGDLGTSTFVDGPVENIIPVDMKVPGCPPRPEDI 133 Query: 167 IYGILLLQKKI 177 I GI+ KI Sbjct: 134 ITGIVKALPKI 144 >gi|315230909|ref|YP_004071345.1| NADH-ubiquinone oxidoreductase subunit B [Thermococcus barophilus MP] gi|315183937|gb|ADT84122.1| NADH-ubiquinone oxidoreductase chain B [Thermococcus barophilus MP] Length = 192 Score = 91.3 bits (225), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 44/132 (33%), Positives = 72/132 (54%), Gaps = 16/132 (12%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E++ P+ D+ERFG SPR +D + G +T + + + +PEP+ V+ Sbjct: 19 CDIEILNIFAPKQDVERFGIKLVGSPRHADAIAFTGPVTRECLPKVIEAFKAVPEPKIVL 78 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIV-----------PVDIYVPGCPPTAEALIYGI--- 170 ++GSCA GGG ++ +Y+V+ G + P IY+PGCPP EA+IY + Sbjct: 79 AIGSCACGGGIWYDTYAVIGGVKELYKILKEEYGIEPPTTIYIPGCPPKPEAIIYAVAMA 138 Query: 171 --LLLQKKIRRV 180 L+ QK+ R + Sbjct: 139 RGLVKQKQKREI 150 >gi|150402793|ref|YP_001330087.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanococcus maripaludis C7] gi|150033823|gb|ABR65936.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanococcus maripaludis C7] Length = 147 Score = 90.9 bits (224), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 46/131 (35%), Positives = 80/131 (61%), Gaps = 8/131 (6%) Query: 55 LMWMTFGLACCAVEMMQASM-PRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRV 113 ++ T G C +E++ + P YD E++ +PR++DV++V G +T ++++L+++ Sbjct: 14 MLVYTGGCNGCDIEVVNCVLSPFYDAEQYNVFLTWNPREADVLVVTGCVTKAVSASLKKI 73 Query: 114 YDQMPEPRYVISMGSCANGGGYYHY------SYSVVRG-CDRIVPVDIYVPGCPPTAEAL 166 YD++PEP+ V++ G+CA GG Y + S + G + I+PVD+ VPGCPP E + Sbjct: 74 YDEIPEPKAVVAAGACALMGGVYKNIGADLGTSSFIDGPVENIIPVDVKVPGCPPRPEDV 133 Query: 167 IYGILLLQKKI 177 I GI+ KI Sbjct: 134 ITGIVKALPKI 144 >gi|89902056|ref|YP_524527.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Rhodoferax ferrireducens T118] gi|89346793|gb|ABD70996.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Rhodoferax ferrireducens T118] Length = 171 Score = 90.9 bits (224), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 39/107 (36%), Positives = 64/107 (59%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E+ P Y++E G ASPR +D+++V G ++ M +AL+R +D +PEP+ V+ Sbjct: 58 CELEINALGNPYYNIEGLGIKFVASPRHADMLLVTGPVSRNMVTALKRTFDAIPEPKLVV 117 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171 ++G C GG + SY+ ++PVD +PGCPP ++ GIL Sbjct: 118 AVGDCGCDGGIFGESYASCGRVSNVIPVDWVIPGCPPPPIEILRGIL 164 >gi|45359024|ref|NP_988581.1| energy conserving hydrogenase A small subunit [Methanococcus maripaludis S2] gi|45047899|emb|CAF31017.1| energy conserving hydrogenase A small subunit [Methanococcus maripaludis S2] Length = 156 Score = 90.9 bits (224), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 40/114 (35%), Positives = 69/114 (60%), Gaps = 3/114 (2%) Query: 59 TFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMP 118 T G C +E++ PRYD+E++G +PR++DV++V G +T L +Y++ P Sbjct: 18 TGGCNGCDIEIVSCLAPRYDIEQYGIYVHNNPREADVLVVTGPVTGAWEKRLLEIYEKTP 77 Query: 119 EPRYVISMGSCANGGGYYHYSYSVVRG-CDRIVPVDIYVPGCPPTAEALIYGIL 171 EP+ VI++G+CA GG + + + G D+++PVD +PGCPP +I ++ Sbjct: 78 EPKIVIAVGACALSGGIFKEGH--IHGPVDKVIPVDAKLPGCPPRPSEIISAVV 129 >gi|291615014|ref|YP_003525171.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Sideroxydans lithotrophicus ES-1] gi|291585126|gb|ADE12784.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Sideroxydans lithotrophicus ES-1] Length = 171 Score = 90.9 bits (224), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 40/107 (37%), Positives = 64/107 (59%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E+ + Y++E G ASPR +D+++V G ++ M AL+R YD P+P+ V+ Sbjct: 57 CELEIHAVNNAYYNIEGMGIKFVASPRHADLLLVTGPVSRHMEIALKRTYDATPDPKLVV 116 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171 ++G CA GG + SY+ ++PVD+ V GCPP A++ GIL Sbjct: 117 AIGDCACDGGIFGESYASCGKVSNVIPVDVVVSGCPPAPTAILQGIL 163 >gi|296532565|ref|ZP_06895272.1| NADH-quinone oxidoreductase subunit B [Roseomonas cervicalis ATCC 49957] gi|296267104|gb|EFH13022.1| NADH-quinone oxidoreductase subunit B [Roseomonas cervicalis ATCC 49957] Length = 167 Score = 90.9 bits (224), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 42/97 (43%), Positives = 62/97 (63%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 CA+E+ +DLERFG ASPR +DV++V+G +T M A +R + M EP +V+ Sbjct: 22 CALEIAALRGVVHDLERFGLRFVASPRHADVLLVSGPMTRTMTEAAQRAHACMAEPGWVV 81 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP 161 ++G CA GGG + +Y+V G +PVD+ +PGCPP Sbjct: 82 AVGDCALGGGVFAGAYAVEEGVGAALPVDLVIPGCPP 118 >gi|148642373|ref|YP_001272886.1| [NiFe]-hydrogenase-3-type complex, small subunit/NADH:quinone oxidoreductase (complex I), subunit PSST/NdhK/NuoB [Methanobrevibacter smithii ATCC 35061] gi|222444424|ref|ZP_03606939.1| hypothetical protein METSMIALI_00035 [Methanobrevibacter smithii DSM 2375] gi|261351026|ref|ZP_05976443.1| carbon monoxide-induced hydrogenase, CooL subunit [Methanobrevibacter smithii DSM 2374] gi|148551390|gb|ABQ86518.1| [NiFe]-hydrogenase-3-type complex, small subunit/NADH:quinone oxidoreductase (complex I), subunit PSST/NdhK/NuoB [Methanobrevibacter smithii ATCC 35061] gi|222433989|gb|EEE41154.1| hypothetical protein METSMIALI_00035 [Methanobrevibacter smithii DSM 2375] gi|288860366|gb|EFC92664.1| carbon monoxide-induced hydrogenase, CooL subunit [Methanobrevibacter smithii DSM 2374] Length = 149 Score = 90.9 bits (224), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 40/112 (35%), Positives = 66/112 (58%), Gaps = 1/112 (0%) Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 G C VE++ + PRYDLE++G +PR++DV+++ G +T + L+RVYD+ PEP Sbjct: 23 GCNGCDVELVALTSPRYDLEQYGIYVHNNPREADVLLLTGAVTEQWVDNLKRVYDKAPEP 82 Query: 121 RYVISMGSCANGGGYYHYSYSVVRG-CDRIVPVDIYVPGCPPTAEALIYGIL 171 + V+++G+C G ++ V +PVD +PGCPP ++ IL Sbjct: 83 KIVVAVGNCPQSGDVFNQEGGKVYAPASDFIPVDAEIPGCPPRPSEILEAIL 134 >gi|56477805|ref|YP_159394.1| subunit of putative formate hydrogenlyase-like membrane complex [Aromatoleum aromaticum EbN1] gi|56313848|emb|CAI08493.1| subunit of putative formate hydrogenlyase-like membrane complex [Aromatoleum aromaticum EbN1] Length = 187 Score = 90.9 bits (224), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 47/139 (33%), Positives = 78/139 (56%), Gaps = 4/139 (2%) Query: 35 HKGFLVTSVDQLVTWARTGSLMWMTFGLAC--CAVEMMQASMPRYDLERFGFAPRASPRQ 92 H+ L+ + D L R ++ + G +C C +E+ + P Y++E G ASPR Sbjct: 27 HRAHLIHA-DILAILGRALAIRHVDGG-SCNGCELEIHALNNPYYNIEGLGIKFVASPRH 84 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 +D+++V G ++ M AL+R YD +P P+ V+++G C GG + SY+ ++PV Sbjct: 85 ADMLLVTGPVSRHMELALKRTYDAIPAPKLVVAIGDCGCTGGIFGESYASCGRISNVIPV 144 Query: 153 DIYVPGCPPTAEALIYGIL 171 D+ VPGCPP ++ GIL Sbjct: 145 DVTVPGCPPPPADILAGIL 163 >gi|302421904|ref|XP_003008782.1| NADH-ubiquinone oxidoreductase 20 kDa subunit [Verticillium albo-atrum VaMs.102] gi|261351928|gb|EEY14356.1| NADH-ubiquinone oxidoreductase 20 kDa subunit [Verticillium albo-atrum VaMs.102] Length = 67 Score = 90.9 bits (224), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 45/73 (61%), Positives = 52/73 (71%), Gaps = 17/73 (23%) Query: 106 MASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEA 165 MA ALR+VYDQMPEPR Y+VVRGCDRIVPVD+YVPGCPPT+EA Sbjct: 1 MAPALRQVYDQMPEPR-----------------CYAVVRGCDRIVPVDVYVPGCPPTSEA 43 Query: 166 LIYGILLLQKKIR 178 L+YGI LQ+K+R Sbjct: 44 LMYGIFQLQRKMR 56 >gi|45359185|ref|NP_988742.1| energy conserving hydrogenase B small subunit [Methanococcus maripaludis S2] gi|45048060|emb|CAF31178.1| energy conserving hydrogenase B small subunit [Methanococcus maripaludis S2] Length = 147 Score = 90.5 bits (223), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 45/131 (34%), Positives = 81/131 (61%), Gaps = 8/131 (6%) Query: 55 LMWMTFGLACCAVEMMQASM-PRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRV 113 ++ T G C +E++ + P YD E++ +PR++DV++V G +T ++++L+++ Sbjct: 14 MLVYTGGCNGCDIEVVNCVLSPFYDAEQYNVFLTWNPREADVLVVTGCVTKAVSASLKKI 73 Query: 114 YDQMPEPRYVISMGSCANGGGYYHY------SYSVVRG-CDRIVPVDIYVPGCPPTAEAL 166 YD++PEP+ V++ G+CA GG Y+ + + + G + I+PVD+ VPGCPP E + Sbjct: 74 YDEIPEPKAVVAAGACALMGGVYNNIGADLGTSTFIDGPVENIIPVDVKVPGCPPRPEDV 133 Query: 167 IYGILLLQKKI 177 I GI+ KI Sbjct: 134 ITGIVKALPKI 144 >gi|134046813|ref|YP_001098298.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Methanococcus maripaludis C5] gi|132664438|gb|ABO36084.1| membrane-bound hydrogenase subunit ehbM [Methanococcus maripaludis C5] Length = 147 Score = 90.5 bits (223), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 46/131 (35%), Positives = 81/131 (61%), Gaps = 8/131 (6%) Query: 55 LMWMTFGLACCAVEMMQASM-PRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRV 113 ++ T G C +E++ + P YD E++ +PR++DV++V G +T ++++L+++ Sbjct: 14 MLVYTGGCNGCDIEVVNCVLSPFYDAEQYNVFLTWNPREADVLVVTGCVTKAVSASLKKI 73 Query: 114 YDQMPEPRYVISMGSCANGGGYYHY------SYSVVRG-CDRIVPVDIYVPGCPPTAEAL 166 YD++PEP+ VI+ G+CA GG Y+ + + + G + I+PVD+ VPGCPP E + Sbjct: 74 YDEIPEPKAVIAAGACALMGGVYNNIGGDLGTSTFIDGPVENIIPVDMKVPGCPPRPEDI 133 Query: 167 IYGILLLQKKI 177 I GI+ KI Sbjct: 134 ISGIVKALPKI 144 >gi|90186408|gb|ABD91507.1| putative NADH dehydrogenase (ubiquinone) chain PSST precursor [Oryza sativa Indica Group] Length = 93 Score = 90.5 bits (223), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 45/64 (70%), Positives = 49/64 (76%) Query: 47 VTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKM 106 + WAR GS+ MTFGLACCAVEMM A YDL+RFG R SPRQSD MI+AGTLTNKM Sbjct: 1 MNWARRGSIWPMTFGLACCAVEMMHAGASCYDLDRFGVIFRPSPRQSDCMIIAGTLTNKM 60 Query: 107 ASAL 110 A AL Sbjct: 61 APAL 64 >gi|240169554|ref|ZP_04748213.1| oxidoreductase [Mycobacterium kansasii ATCC 12478] Length = 159 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 43/112 (38%), Positives = 63/112 (56%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C VE+ A P YD ERFG ASPR +D ++V G +T MA LR P PR VI Sbjct: 48 CEVEISGAFGPVYDAERFGARLVASPRHADALLVTGVVTRNMAQPLRNTLAATPAPRLVI 107 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKK 176 + G CA G + +Y VV ++PVD+ +PGCPP+ + ++ + + ++ Sbjct: 108 ACGDCALNRGVFGDAYGVVGSVGEVIPVDVEIPGCPPSPDQVVMALRSVTRR 159 >gi|218884266|ref|YP_002428648.1| NADH-quinone oxidoreductase, B subunit [Desulfurococcus kamchatkensis 1221n] gi|218765882|gb|ACL11281.1| NADH-quinone oxidoreductase, B subunit [Desulfurococcus kamchatkensis 1221n] Length = 337 Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 48/135 (35%), Positives = 74/135 (54%) Query: 43 VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL 102 ++++ WA SL + + AC AVE M D ER+G+ P SPRQSD+ I G L Sbjct: 2 LERIARWAYARSLWMIHYCSACGAVEFPPLVMAPLDWERYGYMPTPSPRQSDLYIGMGYL 61 Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162 T K + +Y QMPEP+ V++ +C + GG Y SY+ + D + V+ +VPGC P Sbjct: 62 TKKTVKLVLNMYRQMPEPKLVLAGCNCTSTGGPYWDSYATYKRLDDFIEVEGWVPGCMPM 121 Query: 163 AEALIYGILLLQKKI 177 + + I ++K + Sbjct: 122 PDDYLSMIEYVRKDL 136 >gi|302039526|ref|YP_003799848.1| putative formate hydrogenlyase small subunit [Candidatus Nitrospira defluvii] gi|300607590|emb|CBK43923.1| putative Formate hydrogenlyase, small subunit [Candidatus Nitrospira defluvii] Length = 173 Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 43/111 (38%), Positives = 65/111 (58%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +EM + P YD+ERFG ASPR +D ++V G +T M AL+ VY +P+ VI Sbjct: 56 CEMEMNALANPVYDVERFGVHIAASPRHADALVVTGPVTVNMERALKDVYKATADPKIVI 115 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175 ++G CA G + SY+V DR +PVD+ + GCPP ++ + L++ Sbjct: 116 ALGDCAVNCGMFKGSYAVTGPVDRHIPVDVRISGCPPRPAEILAVLAKLRQ 166 >gi|224373087|ref|YP_002607459.1| hydrogenase-4 component I [Nautilia profundicola AmH] gi|223589382|gb|ACM93118.1| hydrogenase-4 component I [Nautilia profundicola AmH] Length = 142 Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 45/119 (37%), Positives = 71/119 (59%), Gaps = 5/119 (4%) Query: 65 CAVEMMQASM-PRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYV 123 C VE+ +M PRYD+ER G SP+ +D+++V G +T + L V D++P P V Sbjct: 21 CDVELATTAMIPRYDVERLGCRYTGSPKHADILLVTGPITARSKPYLLEVLDELPNPFVV 80 Query: 124 ISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKKIR 178 +++G+C G + SY++ DR V VD+ VPGCPP +A+I G+ + ++KIR Sbjct: 81 VAVGTCPTSCGIFRDSYAIEGPLDRYVKVDVNVPGCPPRPQAIIDGVAKALEIWKQKIR 139 >gi|167819736|ref|ZP_02451416.1| putative hydrogenase subunit [Burkholderia pseudomallei 91] Length = 172 Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 42/106 (39%), Positives = 62/106 (58%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E+ P Y++E G ASPR +D++++ G LT M A+R YD P P+ V+ Sbjct: 57 CELELHALGNPYYNIESLGIKFVASPRHADMLLITGPLTLNMRDAVRLAYDATPAPKLVV 116 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGI 170 + G CA GG + SY+V + +VPVD+ +PGCPP L+ GI Sbjct: 117 AAGDCACTGGVFAGSYAVCGPIETLVPVDVAIPGCPPRPIELLRGI 162 >gi|303243649|ref|ZP_07329990.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanothermococcus okinawensis IH1] gi|302485891|gb|EFL48814.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanothermococcus okinawensis IH1] Length = 155 Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 40/113 (35%), Positives = 69/113 (61%), Gaps = 1/113 (0%) Query: 59 TFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMP 118 T G C +E++ PRYD+E++G +PR++D+++V G +T + L+ +Y++ P Sbjct: 18 TGGCNGCDIELVATLAPRYDIEQYGIHVHNNPREADILVVTGPVTLPWKNRLKEIYEKTP 77 Query: 119 EPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171 EP+ VI++G+CA G + + V D+I+PV+ VPGCPP +I +L Sbjct: 78 EPKIVIAVGACALSCGIFKEGH-VCGPVDKIIPVNAKVPGCPPRPAEIIEAVL 129 >gi|209515026|ref|ZP_03263895.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Burkholderia sp. H160] gi|209504652|gb|EEA04639.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Burkholderia sp. H160] Length = 169 Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 43/108 (39%), Positives = 64/108 (59%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E+ + P Y++E G ASPR +D+++V G +T M +AL YD P P+ V+ Sbjct: 57 CELEIHALNNPYYNIEGLGIKFVASPRHADLLLVTGPVTLNMRAALLAAYDATPAPKLVV 116 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILL 172 + G CA GG + SY+V I+PVD+ +PGCPP L+ GIL+ Sbjct: 117 AAGECACTGGIFADSYAVCGPVSSILPVDVMIPGCPPPPVDLLRGILV 164 >gi|224372780|ref|YP_002607152.1| hydrogenase subunit [Nautilia profundicola AmH] gi|223589533|gb|ACM93269.1| hydrogenase subunit [Nautilia profundicola AmH] Length = 166 Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 43/111 (38%), Positives = 65/111 (58%), Gaps = 3/111 (2%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C E S P YDLER G ASPR +DVM ++G +T M Y+QMP P++VI Sbjct: 56 CEAECNALSNPYYDLERLGIHFVASPRHADVMFLSGVMTMNMYHHAIDCYNQMPSPKWVI 115 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175 ++G C G + +Y+ ++G D + +D ++PGCPP+ + +I G+L K Sbjct: 116 AIGECVKDMGVFEKTYA-IKGND--LKIDYFIPGCPPSPKDIIKGLLKFLK 163 >gi|320355287|ref|YP_004196626.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfobulbus propionicus DSM 2032] gi|320123789|gb|ADW19335.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfobulbus propionicus DSM 2032] Length = 248 Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 43/116 (37%), Positives = 64/116 (55%) Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 G C + + P +DL RFG ASPR +D + V G +T M +AL Y +P P Sbjct: 133 GCNACEADTNVLNTPFFDLSRFGIDFVASPRHADGIHVTGPITRNMRTALLDTYAAVPAP 192 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKK 176 + VI+ G CA GG +H S ++ + ++PVD+Y+PGCPP ++ +L KK Sbjct: 193 KVVIASGCCAISGGPFHGSREILGDLNALIPVDLYIPGCPPHPLTTLHALLAFFKK 248 >gi|295699055|ref|YP_003606948.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Burkholderia sp. CCGE1002] gi|295438268|gb|ADG17437.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Burkholderia sp. CCGE1002] Length = 169 Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 43/107 (40%), Positives = 63/107 (58%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E+ + P Y++E G ASPR +D+++V G +T M +AL YD P P+ V+ Sbjct: 57 CELEIHALNNPYYNIEGLGIKFVASPRHADLLLVTGPVTLNMRAALLAAYDATPAPKLVV 116 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171 + G CA GG + SY+V I+PVD+ +PGCPP L+ GIL Sbjct: 117 AAGECACTGGIFANSYAVCGPVSSILPVDVTIPGCPPPPIDLLRGIL 163 >gi|53722170|ref|YP_111155.1| hydrogenase/oxidoreductase subunit [Burkholderia pseudomallei K96243] gi|126443278|ref|YP_001062608.1| putative hydrogenase subunit [Burkholderia pseudomallei 668] gi|126457616|ref|YP_001075561.1| putative hydrogenase subunit [Burkholderia pseudomallei 1106a] gi|134283533|ref|ZP_01770233.1| putative hydrogenase subunit [Burkholderia pseudomallei 305] gi|167723605|ref|ZP_02406841.1| putative hydrogenase subunit [Burkholderia pseudomallei DM98] gi|167849586|ref|ZP_02475094.1| putative hydrogenase subunit [Burkholderia pseudomallei B7210] gi|167906546|ref|ZP_02493751.1| putative hydrogenase subunit [Burkholderia pseudomallei NCTC 13177] gi|167922746|ref|ZP_02509837.1| putative hydrogenase subunit [Burkholderia pseudomallei BCC215] gi|217418381|ref|ZP_03449888.1| putative hydrogenase subunit [Burkholderia pseudomallei 576] gi|226200219|ref|ZP_03795764.1| putative hydrogenase subunit [Burkholderia pseudomallei Pakistan 9] gi|237510550|ref|ZP_04523265.1| formate hydrogenlyase subunit 7 [Burkholderia pseudomallei MSHR346] gi|242311023|ref|ZP_04810040.1| putative hydrogenase subunit [Burkholderia pseudomallei 1106b] gi|254190228|ref|ZP_04896737.1| putative hydrogenase subunit [Burkholderia pseudomallei Pasteur 52237] gi|254193464|ref|ZP_04899898.1| putative hydrogenase subunit [Burkholderia pseudomallei S13] gi|254262469|ref|ZP_04953334.1| putative hydrogenase subunit [Burkholderia pseudomallei 1710a] gi|52212584|emb|CAH38610.1| putative hydrogenase/oxidoreductase subunit [Burkholderia pseudomallei K96243] gi|126222769|gb|ABN86274.1| putative hydrogenase subunit [Burkholderia pseudomallei 668] gi|126231384|gb|ABN94797.1| putative hydrogenase subunit [Burkholderia pseudomallei 1106a] gi|134245282|gb|EBA45376.1| putative hydrogenase subunit [Burkholderia pseudomallei 305] gi|157937905|gb|EDO93575.1| putative hydrogenase subunit [Burkholderia pseudomallei Pasteur 52237] gi|169650217|gb|EDS82910.1| putative hydrogenase subunit [Burkholderia pseudomallei S13] gi|217397685|gb|EEC37700.1| putative hydrogenase subunit [Burkholderia pseudomallei 576] gi|225927727|gb|EEH23769.1| putative hydrogenase subunit [Burkholderia pseudomallei Pakistan 9] gi|235002755|gb|EEP52179.1| formate hydrogenlyase subunit 7 [Burkholderia pseudomallei MSHR346] gi|242134262|gb|EES20665.1| putative hydrogenase subunit [Burkholderia pseudomallei 1106b] gi|254213471|gb|EET02856.1| putative hydrogenase subunit [Burkholderia pseudomallei 1710a] Length = 172 Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 42/106 (39%), Positives = 62/106 (58%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E+ P Y++E G ASPR +D++++ G LT M A+R YD P P+ V+ Sbjct: 57 CELELHALGNPYYNIEGLGIKFVASPRHADMLLITGPLTLNMRDAVRLAYDATPAPKLVV 116 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGI 170 + G CA GG + SY+V + +VPVD+ +PGCPP L+ GI Sbjct: 117 AAGDCACTGGVFAGSYAVCGPIETLVPVDVAIPGCPPRPIELLRGI 162 >gi|261403244|ref|YP_003247468.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanocaldococcus vulcanius M7] gi|261370237|gb|ACX72986.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanocaldococcus vulcanius M7] Length = 148 Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 45/126 (35%), Positives = 76/126 (60%), Gaps = 8/126 (6%) Query: 54 SLMWMTFGLACCAVEMMQASM-PRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRR 112 +++ T G C +E++ A P YD E++ +PR++D++IV G +T +A +LR+ Sbjct: 13 AMLVYTGGCNACDIEVVNAVFSPYYDAEQYNVFLTFNPREADILIVTGCVTKVVAESLRQ 72 Query: 113 VYDQMPEPRYVISMGSCANGGGYYHY-------SYSVVRGCDRIVPVDIYVPGCPPTAEA 165 +Y+++PEP+ VI++G+CA GG Y S + + I+PVD+ VPGC P E Sbjct: 73 IYEKIPEPKAVIAVGACALMGGVYKNIGGDLGTSEFIAGPVENIIPVDVKVPGCAPRPED 132 Query: 166 LIYGIL 171 +I GI+ Sbjct: 133 IISGIV 138 >gi|289804981|ref|ZP_06535610.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 89 Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 48/89 (53%), Positives = 64/89 (71%), Gaps = 3/89 (3%) Query: 67 VEMMQASMPRYDLERFGF-APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVIS 125 VEM+ + +D+ RFG RASPRQ+D+M+VAGT KMA ++R+YDQM EP++VIS Sbjct: 2 VEMVTSFTAVHDVARFGAEVLRASPRQADLMVVAGTCFTKMAPVIQRLYDQMLEPKWVIS 61 Query: 126 MGSCANGGGYYHYSYSVVRGCDRIVPVDI 154 MG+CAN GG Y YSVV+G + PVD+ Sbjct: 62 MGACANSGGMYDI-YSVVQGLISL-PVDV 88 >gi|167828121|ref|ZP_02459592.1| putative hydrogenase subunit [Burkholderia pseudomallei 9] Length = 165 Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 42/106 (39%), Positives = 62/106 (58%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E+ P Y++E G ASPR +D++++ G LT M A+R YD P P+ V+ Sbjct: 57 CELELHALGNPYYNIEGLGIKFVASPRHADMLLITGPLTLNMRDAVRLAYDATPAPKLVV 116 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGI 170 + G CA GG + SY+V + +VPVD+ +PGCPP L+ GI Sbjct: 117 AAGDCACTGGVFAGSYAVCGPIETLVPVDVAIPGCPPRPIELLRGI 162 >gi|167742571|ref|ZP_02415345.1| putative hydrogenase subunit [Burkholderia pseudomallei 14] gi|167914902|ref|ZP_02501993.1| putative hydrogenase subunit [Burkholderia pseudomallei 112] gi|254300487|ref|ZP_04967933.1| putative hydrogenase subunit [Burkholderia pseudomallei 406e] gi|157810342|gb|EDO87512.1| putative hydrogenase subunit [Burkholderia pseudomallei 406e] Length = 172 Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 42/106 (39%), Positives = 62/106 (58%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E+ P Y++E G ASPR +D++++ G LT M A+R YD P P+ V+ Sbjct: 57 CELELHALGNPYYNIEGLGIKFVASPRHADMLLITGPLTLNMRDAVRLAYDATPAPKLVV 116 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGI 170 + G CA GG + SY+V + +VPVD+ +PGCPP L+ GI Sbjct: 117 AAGDCACTGGVFAGSYAVCGPIETLVPVDVAIPGCPPRPIELLRGI 162 >gi|134045163|ref|YP_001096649.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Methanococcus maripaludis C5] gi|132662788|gb|ABO34434.1| membrane-bound hydrogenase subunit ehaN [Methanococcus maripaludis C5] Length = 156 Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 40/116 (34%), Positives = 69/116 (59%), Gaps = 3/116 (2%) Query: 59 TFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMP 118 T G C +E++ PRYD+E++G +PR++DV++V G +T L +Y++ P Sbjct: 18 TGGCNGCDIEVVSCLAPRYDIEQYGIYVHNNPREADVLVVTGPVTGAWEKRLLEIYEKTP 77 Query: 119 EPRYVISMGSCANGGGYYHYSYSVVRG-CDRIVPVDIYVPGCPPTAEALIYGILLL 173 EP+ VI++G+CA GG + + + G D ++PVD +PGCPP +I ++ + Sbjct: 78 EPKIVIAVGACALSGGIFKEGH--IHGPVDSVIPVDAKLPGCPPRPSEIISAVVTI 131 >gi|89895860|ref|YP_519347.1| formate hydrogenlyase subunit 7 [Desulfitobacterium hafniense Y51] gi|89335308|dbj|BAE84903.1| formate hydrogenlyase subunit 7 [Desulfitobacterium hafniense Y51] Length = 155 Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 43/123 (34%), Positives = 66/123 (53%), Gaps = 5/123 (4%) Query: 57 WMTFGLAC-----CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALR 111 W L C C EM P YDL+RFG ASPR +D+++ G ++ + A Sbjct: 33 WHIRHLDCGSCNGCDWEMSALLNPIYDLQRFGLDFVASPRHADILMCTGPMSTHLIQAAL 92 Query: 112 RVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171 Y+ P P+ +I++G CA GG + +Y+ G +PVDI +PGCPP+ + L+ +L Sbjct: 93 ATYEGTPNPKRIIAVGDCALDGGMFKEAYAAHNGVGEALPVDIKIPGCPPSPDELLKVLL 152 Query: 172 LLQ 174 L+ Sbjct: 153 QLK 155 >gi|320101195|ref|YP_004176787.1| NADH dehydrogenase (ubiquinone) 30 kDa subunit [Desulfurococcus mucosus DSM 2162] gi|319753547|gb|ADV65305.1| NADH dehydrogenase (ubiquinone) 30 kDa subunit [Desulfurococcus mucosus DSM 2162] Length = 338 Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 47/122 (38%), Positives = 67/122 (54%) Query: 43 VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL 102 +++ W+ + SL + + AC AVE M D ER+G+ P SPRQSD+ I G L Sbjct: 3 LEKAAKWSFSRSLWMIHYCSACGAVEFPPLVMSPLDWERYGYMPTPSPRQSDLYIGMGYL 62 Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162 T K +Y QMPEPR V++ +C + GG Y SY+ + D V V+ +VPGC P Sbjct: 63 TKKTVKLFLNMYRQMPEPRLVLAGCNCTSTGGLYWDSYATYKRLDDFVEVEGWVPGCMPM 122 Query: 163 AE 164 + Sbjct: 123 PD 124 >gi|159905595|ref|YP_001549257.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanococcus maripaludis C6] gi|159887088|gb|ABX02025.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanococcus maripaludis C6] Length = 156 Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 40/116 (34%), Positives = 69/116 (59%), Gaps = 3/116 (2%) Query: 59 TFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMP 118 T G C +E++ PRYD+E++G +PR++DV++V G +T L +Y++ P Sbjct: 18 TGGCNGCDIEVVSCLAPRYDIEQYGIYVHNNPREADVLVVTGPVTGAWEKRLLEIYEKTP 77 Query: 119 EPRYVISMGSCANGGGYYHYSYSVVRG-CDRIVPVDIYVPGCPPTAEALIYGILLL 173 EP+ VI++G+CA GG + + + G D ++PVD +PGCPP +I ++ + Sbjct: 78 EPKIVIAVGACALSGGIFKEGH--IHGPVDSVIPVDAKLPGCPPRPSEIISAVVAI 131 >gi|150399680|ref|YP_001323447.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanococcus vannielii SB] gi|150012383|gb|ABR54835.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanococcus vannielii SB] Length = 147 Score = 89.0 bits (219), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 44/131 (33%), Positives = 80/131 (61%), Gaps = 8/131 (6%) Query: 55 LMWMTFGLACCAVEMMQASM-PRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRV 113 ++ T G C +E++ + P YD E++ +PR++D+++V G +T + +L+++ Sbjct: 14 MLVYTGGCNGCDIEVVNCVLSPFYDAEQYNVFLTWNPREADILVVTGCVTKSVTKSLKKI 73 Query: 114 YDQMPEPRYVISMGSCANGGGYYHY------SYSVVRG-CDRIVPVDIYVPGCPPTAEAL 166 Y+++P P+ V+S+G+CA GG Y+ + + V G ++I+PVD+ VPGCPP E + Sbjct: 74 YEEIPNPKAVVSVGACALMGGVYNNIGADLGTSTFVDGPVEKIIPVDVKVPGCPPRPEDV 133 Query: 167 IYGILLLQKKI 177 I GI+ KI Sbjct: 134 ITGIVKALPKI 144 >gi|118463973|ref|YP_884232.1| hydrogenase-4, I subunit, putative [Mycobacterium avium 104] gi|118165260|gb|ABK66157.1| hydrogenase-4, I subunit, putative [Mycobacterium avium 104] Length = 135 Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 45/103 (43%), Positives = 57/103 (55%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C VE+ A P YD ERFG ASPR +D ++V G +T M LR P+PR VI Sbjct: 24 CEVEISGAFGPVYDAERFGARLVASPRHADALLVTGVVTRNMVEPLRNTLAATPQPRVVI 83 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALI 167 + G CA G + +Y VV IVPVD+ V GCPPT ++ Sbjct: 84 ACGDCALNRGVFTDAYGVVGAVGEIVPVDVEVAGCPPTPAQIV 126 >gi|162453072|ref|YP_001615439.1| NAD-dependent dehydrogenase subunit [Sorangium cellulosum 'So ce 56'] gi|161163654|emb|CAN94959.1| NAD-dependent dehydrogenase subunit [Sorangium cellulosum 'So ce 56'] Length = 250 Score = 88.6 bits (218), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 41/113 (36%), Positives = 65/113 (57%) Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 G C +E+ + +D++RFG ASPR +D +++ G LT M A++ +D MP+P Sbjct: 134 GCNACELELNAVTNVNFDVQRFGIEWVASPRHADALVLTGPLTRNMKEAVQLAWDAMPDP 193 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLL 173 R+++++G+CA GG Y + V RG V +YVPGCPP + +L L Sbjct: 194 RFIVAVGACAISGGLYDGAAGVDRGFLERVGPSLYVPGCPPHPLTFVNAVLDL 246 >gi|15669553|ref|NP_248366.1| formate hydrogenlyase subunit 7 [Methanocaldococcus jannaschii DSM 2661] gi|41018429|sp|Q58758|Y1363_METJA RecName: Full=Uncharacterized protein MJ1363 gi|1592007|gb|AAB99371.1| formate hydrogenlyase, subunit 7 [Methanocaldococcus jannaschii DSM 2661] Length = 151 Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 45/131 (34%), Positives = 77/131 (58%), Gaps = 8/131 (6%) Query: 55 LMWMTFGLACCAVEMMQASM-PRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRV 113 ++ T G C +E++ A P YD E++ +PR++D+++V G +T +A +LR++ Sbjct: 17 MLVYTGGCNACDIEVVNAIFSPFYDAEQYNVFLTFNPREADILVVTGCVTKVVAESLRKI 76 Query: 114 YDQMPEPRYVISMGSCANGGGYYH-------YSYSVVRGCDRIVPVDIYVPGCPPTAEAL 166 Y+++PEP+ V+++G+CA GG Y S V + I+PVD+ VPGC P E + Sbjct: 77 YEKIPEPKAVVAVGACALMGGVYKNIGGDLGTSDFVAGPVENIIPVDVKVPGCAPRPEDI 136 Query: 167 IYGILLLQKKI 177 I GI+ K+ Sbjct: 137 IAGIVKALPKV 147 >gi|256810104|ref|YP_003127473.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanocaldococcus fervens AG86] gi|256793304|gb|ACV23973.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanocaldococcus fervens AG86] Length = 147 Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 44/131 (33%), Positives = 77/131 (58%), Gaps = 8/131 (6%) Query: 55 LMWMTFGLACCAVEMMQASM-PRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRV 113 ++ T G C +E++ A P YD E++ +PR++D+++V G +T +A +L+++ Sbjct: 14 MLVYTGGCNACDIEVVNAIFSPFYDAEQYNVFLTFNPREADILVVTGCVTKTVAESLKKI 73 Query: 114 YDQMPEPRYVISMGSCANGGGYYH-------YSYSVVRGCDRIVPVDIYVPGCPPTAEAL 166 Y+++PEP+ V+++G+CA GG Y S V + I+PVD+ VPGC P E + Sbjct: 74 YEKIPEPKAVVAVGACALMGGVYKNIGGDLGTSDFVAGPVENIIPVDVKVPGCAPRPEDI 133 Query: 167 IYGILLLQKKI 177 I GI+ K+ Sbjct: 134 ITGIIRALPKV 144 >gi|167589517|ref|ZP_02381905.1| Putative hydrogenase/oxidoreductase subunit [Burkholderia ubonensis Bu] Length = 169 Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 42/107 (39%), Positives = 63/107 (58%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E+ + P Y++E G ASPR +D+++V G +T M +A+ YD P P+ V+ Sbjct: 57 CELEIHALNNPVYNIEGLGIKFVASPRHADLLLVTGPVTLNMRAAVLAAYDATPSPKLVV 116 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171 + G CA GG + SY+V I+PVD+ +PGCPP L+ GIL Sbjct: 117 AAGECACTGGIFADSYAVCGPVSSILPVDVTIPGCPPPPVDLLRGIL 163 >gi|189425610|ref|YP_001952787.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Geobacter lovleyi SZ] gi|189421869|gb|ACD96267.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Geobacter lovleyi SZ] Length = 252 Score = 88.2 bits (217), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 39/101 (38%), Positives = 63/101 (62%) Query: 77 YDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY 136 +DL RFG ASPR +D + V G ++ M AL + ++ +P P+ V++ G+CA GG + Sbjct: 151 WDLGRFGIQFVASPRHADGIWVTGPVSENMREALLKTWEAIPAPKIVVACGACAIAGGPF 210 Query: 137 HYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 S + G D ++PVD+Y+PGCPP ++ G+L LQ ++ Sbjct: 211 SGSPQISLGLDTLLPVDLYIPGCPPHPATILDGLLRLQGRL 251 >gi|152990463|ref|YP_001356185.1| Ni-Fe hydrogenase, small subunit HycG [Nitratiruptor sp. SB155-2] gi|151422324|dbj|BAF69828.1| Ni-Fe hydrogenase, small subunit HycG [Nitratiruptor sp. SB155-2] Length = 167 Score = 88.2 bits (217), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 40/107 (37%), Positives = 62/107 (57%), Gaps = 1/107 (0%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C E S P YDLER G ASPR +D+++V+G +T M L Y+Q+P P++VI Sbjct: 56 CEAECNALSNPYYDLERLGIRFVASPRHADILLVSGVVTFNMLPHLLDAYEQLPSPKWVI 115 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171 ++G C G + S+++ +PV ++PGCPPT + ++ G L Sbjct: 116 TLGDCTQ-GTLFKDSFAIKGPVKEHLPVAYHIPGCPPTPDEIVRGFL 161 >gi|251772759|gb|EES53321.1| putative hydrogenase-3 subunit (HycG) [Leptospirillum ferrodiazotrophum] Length = 163 Score = 88.2 bits (217), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 40/107 (37%), Positives = 61/107 (57%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E+ P L GF+ ASPR +D+++V G ++ M AL + MP P+ V+ Sbjct: 47 CELELWALENPVTSLSSLGFSFVASPRHADILLVTGPVSCHMKEALETTHQAMPAPKRVL 106 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171 ++G CA GG + SY+ G I+P D+ V GCPP EA++ G+L Sbjct: 107 AVGDCAISGGVFRGSYATHDGLSSILPPDVTVHGCPPPPEAIVEGVL 153 >gi|94313588|ref|YP_586797.1| hydrogenase 4 subunit I [Cupriavidus metallidurans CH34] gi|93357440|gb|ABF11528.1| Hydrogenase-4 subunit I [Cupriavidus metallidurans CH34] Length = 171 Score = 88.2 bits (217), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 40/107 (37%), Positives = 62/107 (57%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E+ P Y++E G ASPR +D+++V G ++ M ALRR Y+ PEP+ V+ Sbjct: 56 CELEIHALGNPYYNIEGLGVRFVASPRHADMLLVTGPVSRHMEEALRRTYEATPEPKLVV 115 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171 ++G C G + SY+ ++PVD+ VPGCPP ++ GIL Sbjct: 116 AVGDCGCTSGIFGESYASCGRVSNVIPVDVSVPGCPPPPIDILRGIL 162 >gi|150402630|ref|YP_001329924.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanococcus maripaludis C7] gi|150033660|gb|ABR65773.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanococcus maripaludis C7] Length = 156 Score = 88.2 bits (217), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 39/116 (33%), Positives = 69/116 (59%), Gaps = 3/116 (2%) Query: 59 TFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMP 118 T G C +E++ P+YD+E++G +PR++DV++V G +T L +Y++ P Sbjct: 18 TGGCNGCDIEVVSCLAPKYDIEQYGIYVHNNPREADVLVVTGPVTGAWEKRLLEIYEKTP 77 Query: 119 EPRYVISMGSCANGGGYYHYSYSVVRG-CDRIVPVDIYVPGCPPTAEALIYGILLL 173 EP+ VI++G+CA GG + + + G D ++PVD +PGCPP +I ++ + Sbjct: 78 EPKIVIAVGACALSGGIFKEGH--IHGPVDSVIPVDAKLPGCPPRPSEIISAVVAI 131 >gi|167572898|ref|ZP_02365772.1| putative hydrogenase subunit [Burkholderia oklahomensis C6786] Length = 174 Score = 88.2 bits (217), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 42/106 (39%), Positives = 62/106 (58%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E+ P Y++E G ASPR +D++++ G LT M A+R YD P P+ V+ Sbjct: 57 CELELHALGNPYYNIEGLGIKFVASPRHADMLLITGPLTLNMRDAVRLAYDATPAPKLVV 116 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGI 170 + G CA GG + SY+V ++ VPVD+ +PGCPP L+ GI Sbjct: 117 AAGDCACTGGVFADSYAVCGPLEKRVPVDLTIPGCPPRPIDLLRGI 162 >gi|5734540|emb|CAB52769.1| hydrogenase small subunit [Methanothermobacter thermautotrophicus] Length = 148 Score = 88.2 bits (217), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 45/133 (33%), Positives = 75/133 (56%), Gaps = 4/133 (3%) Query: 43 VDQLVTWARTGSL---MWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVA 99 +D L + R S+ + T G C +E++ PRYDLE++G +PR++DV++V Sbjct: 2 LDALKSILRKTSIHVCLVNTGGCNGCDIEVLALLSPRYDLEQYGIYVHQNPREADVILVT 61 Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS-YSVVRGCDRIVPVDIYVPG 158 G +T + L+R+Y + PEP+ V+++G+C G ++ SV +PVD+ VPG Sbjct: 62 GAVTEQWREKLQRIYSKAPEPKIVVALGNCPISGDVFNQEGGSVYAPVSDFIPVDVEVPG 121 Query: 159 CPPTAEALIYGIL 171 CPP ++ IL Sbjct: 122 CPPRPFEILEAIL 134 >gi|303325434|ref|ZP_07355877.1| hydrogenase subunit [Desulfovibrio sp. 3_1_syn3] gi|302863350|gb|EFL86281.1| hydrogenase subunit [Desulfovibrio sp. 3_1_syn3] Length = 271 Score = 88.2 bits (217), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 43/103 (41%), Positives = 64/103 (62%), Gaps = 3/103 (2%) Query: 77 YDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY 136 YDL RFG ASPR +D ++V G +T M AL + MPEPR ++++G+CA GG + Sbjct: 168 YDLGRFGIEFTASPRHADGLVVTGPVTENMRRALLDTWAAMPEPRLLVAVGACAISGGLF 227 Query: 137 HYSYSVVRGCD---RIVPVDIYVPGCPPTAEALIYGILLLQKK 176 S G D R+ PVD++VPGCPP +++ G+L L+++ Sbjct: 228 RESPQCHGGLDGGGRLPPVDVFVPGCPPNPWSILDGLLSLRRR 270 >gi|37718833|gb|AAR01704.1| putative NADH ubiquinone oxidoreductase [Oryza sativa Japonica Group] Length = 97 Score = 88.2 bits (217), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 44/83 (53%), Positives = 54/83 (65%), Gaps = 4/83 (4%) Query: 47 VTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKM 106 + WAR GS+ MTFGLAC AVEMM A RYD +RFG SPRQSD MI+ GTLTNKM Sbjct: 1 MNWARRGSIWPMTFGLACFAVEMMHAGASRYDFDRFGVIFHPSPRQSDCMIITGTLTNKM 60 Query: 107 ASALRRVYDQMPEPRYVISMGSC 129 ALR+ P + +++ +C Sbjct: 61 VPALRKAL----IPTFNVNLETC 79 >gi|221198810|ref|ZP_03571855.1| hydrogenase-4 component I [Burkholderia multivorans CGD2M] gi|221205071|ref|ZP_03578087.1| hydrogenase-4 component I [Burkholderia multivorans CGD2] gi|221174862|gb|EEE07293.1| hydrogenase-4 component I [Burkholderia multivorans CGD2] gi|221181261|gb|EEE13663.1| hydrogenase-4 component I [Burkholderia multivorans CGD2M] Length = 171 Score = 88.2 bits (217), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 41/107 (38%), Positives = 63/107 (58%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E+ + P Y++E G ASPR +D+++V G +T M +A+ YD P P+ V+ Sbjct: 57 CELEIHALNNPYYNIEGLGIKFVASPRHADLLLVTGPVTLNMKAAVLAAYDATPAPKLVV 116 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171 + G CA GG + SY+V ++PVD+ +PGCPP L+ GIL Sbjct: 117 AAGECACTGGIFADSYAVCGPVSSVLPVDVTIPGCPPPPIDLLRGIL 163 >gi|289192361|ref|YP_003458302.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanocaldococcus sp. FS406-22] gi|288938811|gb|ADC69566.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanocaldococcus sp. FS406-22] Length = 148 Score = 88.2 bits (217), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 44/124 (35%), Positives = 74/124 (59%), Gaps = 8/124 (6%) Query: 55 LMWMTFGLACCAVEMMQASM-PRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRV 113 ++ T G C +E++ A P YD E++ +PR++D+++V G +T +A +LR++ Sbjct: 14 MLVYTGGCNACDIEVVNAIFSPFYDAEQYNVFLTFNPREADILVVTGCVTKVVAESLRKI 73 Query: 114 YDQMPEPRYVISMGSCANGGGYYHY-------SYSVVRGCDRIVPVDIYVPGCPPTAEAL 166 Y+++PEP+ V+++G+CA GG Y S V + I+PVD+ VPGC P E + Sbjct: 74 YEKIPEPKAVVAVGACALMGGVYKNIGGDLGTSDFVAGPVENIIPVDVKVPGCAPRPEDI 133 Query: 167 IYGI 170 I GI Sbjct: 134 IAGI 137 >gi|296136161|ref|YP_003643403.1| hypothetical protein Tint_1703 [Thiomonas intermedia K12] gi|295796283|gb|ADG31073.1| hypothetical protein Tint_1703 [Thiomonas intermedia K12] Length = 273 Score = 88.2 bits (217), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 40/98 (40%), Positives = 58/98 (59%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C E+ P Y+L R G SPR +D+++V G +T M L R Y+ MP+PR+V+ Sbjct: 149 CESELQALLNPFYNLHRLGVFFTPSPRFADLLLVTGPVTAAMREPLLRTYEAMPQPRWVM 208 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162 + G+CA GG Y+ G D I+PVD+++PGCPP Sbjct: 209 AAGTCATGGSTNGGGYACHEGLDGILPVDVWLPGCPPN 246 >gi|319957574|ref|YP_004168837.1| NADH ubiquinone oxidoreductase 20 kda subunit [Nitratifractor salsuginis DSM 16511] gi|319419978|gb|ADV47088.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Nitratifractor salsuginis DSM 16511] Length = 170 Score = 88.2 bits (217), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 38/107 (35%), Positives = 63/107 (58%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C E S P YDLER G ASPR +D+M+++G LT M + ++Q+PEP++ I Sbjct: 56 CEAECNALSNPYYDLERLGIHFVASPRHADLMLLSGVLTFNMLPHVLDAWEQIPEPKWCI 115 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171 ++G C + ++++V +PV ++PGCPP+ + +I G+L Sbjct: 116 TLGDCPAMQAPFEHTFAVTAPASEHLPVAHHIPGCPPSPDRIIEGLL 162 >gi|148259621|ref|YP_001233748.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Acidiphilium cryptum JF-5] gi|326402829|ref|YP_004282910.1| putative NADH ubiquinone oxidoreductase [Acidiphilium multivorum AIU301] gi|146401302|gb|ABQ29829.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Acidiphilium cryptum JF-5] gi|325049690|dbj|BAJ80028.1| putative NADH ubiquinone oxidoreductase [Acidiphilium multivorum AIU301] Length = 264 Score = 88.2 bits (217), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 44/117 (37%), Positives = 69/117 (58%), Gaps = 2/117 (1%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C E+ + P Y+L R G SPR +D+++V G +T M LRR ++ MP PR+V+ Sbjct: 141 CESELQALNNPFYNLHRLGIFFTPSPRFADLLLVTGPVTRAMLEPLRRTWEAMPAPRWVM 200 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILL-LQKKIRRV 180 + G+CA GG + G + +PVD+Y+PGCPP A+I +L+ L ++ +RV Sbjct: 201 ASGTCAVSGGIAP-GGPCLSGLEEALPVDLYLPGCPPNPAAIIEALLMFLGRRAQRV 256 >gi|296109474|ref|YP_003616423.1| hypothetical protein Metin_0794 [Methanocaldococcus infernus ME] gi|295434288|gb|ADG13459.1| hypothetical protein Metin_0794 [Methanocaldococcus infernus ME] Length = 154 Score = 88.2 bits (217), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 45/125 (36%), Positives = 74/125 (59%), Gaps = 8/125 (6%) Query: 55 LMWMTFGLACCAVEMMQASM-PRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRV 113 ++ T G C +E + A P YD E++ +PR++D++IV+G +T + +LR++ Sbjct: 21 MLVYTGGCNGCDIEAVNAVFSPYYDAEQYNVFLTFNPRETDILIVSGCVTKFVKESLRKI 80 Query: 114 YDQMPEPRYVISMGSCANGGGYYHY-------SYSVVRGCDRIVPVDIYVPGCPPTAEAL 166 Y+++PEP+ V+++GSCA GG Y S V + I+PVD+ VPGC P E + Sbjct: 81 YEKIPEPKAVVAIGSCALTGGVYKNIGGDLGTSDFVAGPVENIIPVDVKVPGCAPRPEDI 140 Query: 167 IYGIL 171 I GI+ Sbjct: 141 ISGIV 145 >gi|313904888|ref|ZP_07838260.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Eubacterium cellulosolvens 6] gi|313470321|gb|EFR65651.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Eubacterium cellulosolvens 6] Length = 156 Score = 87.8 bits (216), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 47/122 (38%), Positives = 74/122 (60%), Gaps = 6/122 (4%) Query: 61 GLAC--CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMP 118 G +C C +E++ + P YD ERFG P Q+D+ +V G + ++ ++++YDQMP Sbjct: 15 GASCNGCDIEVLASLTPVYDAERFGVENTGDPMQADIFLVTGGINDQCYDVVKQLYDQMP 74 Query: 119 EPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQ 174 P+ V+++G CA GG + +Y + G D +PVDIYVPGC +A+I GI+ L Q Sbjct: 75 RPKVVVAVGVCACTGGIFKDAYGIHGGVDTCIPVDIYVPGCAARPQAIIDGIVKAVELFQ 134 Query: 175 KK 176 K+ Sbjct: 135 KR 136 >gi|167565804|ref|ZP_02358720.1| putative hydrogenase subunit [Burkholderia oklahomensis EO147] Length = 174 Score = 87.8 bits (216), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 42/106 (39%), Positives = 62/106 (58%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E+ P Y++E G ASPR +D++++ G LT M A+R YD P P+ V+ Sbjct: 57 CELELHALGNPYYNIEGLGIKFVASPRHADMLLITGPLTLNMRDAVRLAYDATPAPKLVV 116 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGI 170 + G CA GG + SY+V ++ VPVD+ +PGCPP L+ GI Sbjct: 117 AAGDCACTGGVFADSYAVCGPLEKRVPVDLTIPGCPPRPIDLLCGI 162 >gi|296161106|ref|ZP_06843916.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Burkholderia sp. Ch1-1] gi|295888629|gb|EFG68437.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Burkholderia sp. Ch1-1] Length = 176 Score = 87.8 bits (216), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 41/107 (38%), Positives = 63/107 (58%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E+ S P Y++E G ASPR +D+++V G LT M A+ + Y+ P P+ V+ Sbjct: 57 CELEINALSNPYYNIEGLGIRIVASPRHADMLLVTGPLTLNMREAVWQAYEATPHPKLVV 116 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171 + G CA GG + SY+V ++PVD+ +PGCPP ++ GIL Sbjct: 117 AAGECACTGGMFRDSYAVCGPLSTLLPVDVTIPGCPPPPIDILRGIL 163 >gi|320100262|ref|YP_004175854.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfurococcus mucosus DSM 2162] gi|319752614|gb|ADV64372.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfurococcus mucosus DSM 2162] Length = 152 Score = 87.8 bits (216), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 45/120 (37%), Positives = 68/120 (56%), Gaps = 10/120 (8%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E++ A P +D ERFG SPR +DV+++ G +T + + + P PR +I Sbjct: 18 CDIEILDALTPFHDAERFGVKLVGSPRHADVILMTGPVTLETLPKVLNAIEAAPRPRIII 77 Query: 125 SMGSCANGGGYYHYSYSVVRGC--------DRIVPVDI--YVPGCPPTAEALIYGILLLQ 174 ++GSC GGG +H +YS + G +R + VD YVPGCP EAL+Y I L++ Sbjct: 78 ALGSCGVGGGIWHDTYSTIGGIKGLEKMLKERGIRVDAIYYVPGCPIRPEALLYAIALIK 137 >gi|325529420|gb|EGD06341.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Burkholderia sp. TJI49] Length = 273 Score = 87.8 bits (216), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 41/98 (41%), Positives = 57/98 (58%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C E+ P Y+L R G SPR +DV++V G +T M L ++ MP PR+VI Sbjct: 150 CESELQALDNPFYNLHRLGIFFTPSPRFADVLLVTGPVTKAMRQPLLETWEAMPSPRWVI 209 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162 + G+CA GG +Y+ G D ++PVDIY+PGCPP Sbjct: 210 ATGTCAVSGGMTGGNYACGTGLDGVLPVDIYLPGCPPN 247 >gi|218513798|ref|ZP_03510638.1| NADH-ubiquinone oxidoreductase protein, chain B [Rhizobium etli 8C-3] Length = 77 Score = 87.8 bits (216), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 39/63 (61%), Positives = 53/63 (84%), Gaps = 1/63 (1%) Query: 117 MPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKK 176 MPEPR+VI+MG+CA GG Y+ +Y+VV+G + VPVD++VPGCPP EAL++G LLLQ+K Sbjct: 1 MPEPRWVIAMGTCAISGGVYN-TYAVVQGSETFVPVDVHVPGCPPRPEALMHGFLLLQEK 59 Query: 177 IRR 179 I+R Sbjct: 60 IKR 62 >gi|152991860|ref|YP_001357581.1| Ni-Fe hydrogenase, small subunit HycG [Sulfurovum sp. NBC37-1] gi|151423721|dbj|BAF71224.1| Ni-Fe hydrogenase, small subunit HycG [Sulfurovum sp. NBC37-1] Length = 168 Score = 87.8 bits (216), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 43/113 (38%), Positives = 63/113 (55%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C E S P YDLER G ASPR +DVM++ G +T M + Y Q+PEP++VI Sbjct: 56 CEAECNALSNPYYDLERLGIYFVASPRHADVMLLNGLMTFNMTPHVLDAYKQIPEPKWVI 115 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 ++G+C + +++V +PV ++PGCPP +I G+L KKI Sbjct: 116 TLGACPVMEAPFEKTFAVKAPAADHLPVAHHIPGCPPEPLEIIRGLLEFLKKI 168 >gi|20093902|ref|NP_613749.1| Ni,Fe-hydrogenase III small subunit [Methanopyrus kandleri AV19] gi|19886843|gb|AAM01679.1| Ni,Fe-hydrogenase III small subunit [Methanopyrus kandleri AV19] Length = 162 Score = 87.8 bits (216), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 47/137 (34%), Positives = 82/137 (59%), Gaps = 4/137 (2%) Query: 39 LVTSVDQLVTWARTGSL---MWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDV 95 L +++ +L + R+ S+ + T G C +E++ RYDLE++G +PR+SDV Sbjct: 3 LKSALKKLKGFVRSRSIHVTVVNTGGCNGCDIEILACYTYRYDLEQYGIYYHNNPRKSDV 62 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR-IVPVDI 154 +IV G +T + L ++Y ++PEP+ V+++G+CA GG ++ V G R ++PVD Sbjct: 63 LIVTGPVTYQWRDKLVKLYHKVPEPKAVVAVGTCACSGGIFNQRGGRVCGPVREVIPVDA 122 Query: 155 YVPGCPPTAEALIYGIL 171 VPGCPP E ++ ++ Sbjct: 123 EVPGCPPRPEEIVSAVV 139 >gi|320101917|ref|YP_004177508.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Isosphaera pallida ATCC 43644] gi|319749199|gb|ADV60959.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Isosphaera pallida ATCC 43644] Length = 257 Score = 87.8 bits (216), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 39/101 (38%), Positives = 62/101 (61%) Query: 77 YDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY 136 +DL RFG ASPR +D +++ G +T M AL + ++ +P P+ VI++G+CA GG + Sbjct: 151 FDLGRFGIQFVASPRHADGLLITGPVTKNMVLALEKSHEAVPAPKIVIAVGACAISGGPF 210 Query: 137 HYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 G D ++PVD+Y+PGCPP ++ G+L L K+ Sbjct: 211 AGHAEQSNGADDVLPVDLYIPGCPPHPLTILDGLLRLLDKL 251 >gi|218884334|ref|YP_002428716.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Desulfurococcus kamchatkensis 1221n] gi|218765950|gb|ACL11349.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Desulfurococcus kamchatkensis 1221n] Length = 156 Score = 87.8 bits (216), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 43/125 (34%), Positives = 70/125 (56%), Gaps = 10/125 (8%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E++ A P +D ERFG SPR +DV+++ G +T + + + P PR ++ Sbjct: 22 CDIEILDALTPFHDAERFGVKLVGSPRHADVILLTGPITIETLPKVINAIEAAPRPRIIV 81 Query: 125 SMGSCANGGGYYHYSYSVVRGC--------DRIVPVD--IYVPGCPPTAEALIYGILLLQ 174 ++GSC GGG +H +YS + G ++ + VD YVPGCP EAL+Y I L++ Sbjct: 82 ALGSCGVGGGIWHDTYSTIGGVRSLKKILDEKGIQVDGIYYVPGCPIRPEALLYAIALIK 141 Query: 175 KKIRR 179 + + Sbjct: 142 GLVSK 146 >gi|304314558|ref|YP_003849705.1| energy-converting hydrogenase A, subunit N [Methanothermobacter marburgensis str. Marburg] gi|302588017|gb|ADL58392.1| energy-converting hydrogenase A, subunit N [Methanothermobacter marburgensis str. Marburg] Length = 148 Score = 87.8 bits (216), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 45/133 (33%), Positives = 74/133 (55%), Gaps = 4/133 (3%) Query: 43 VDQLVTWARTGSL---MWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVA 99 +D L + R S+ + T G C +E++ PRYDLE++G +PR++DV++V Sbjct: 2 LDALKSILRKTSIHVCLVNTGGCNGCDIEVLALLSPRYDLEQYGIYVHQNPREADVILVT 61 Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS-YSVVRGCDRIVPVDIYVPG 158 G +T + L+R+Y + PEP+ V+++G+C G ++ SV +PVD VPG Sbjct: 62 GAVTEQWREKLQRIYSKAPEPKIVVALGNCPISGDVFNQEGGSVYAPVSDFIPVDAEVPG 121 Query: 159 CPPTAEALIYGIL 171 CPP ++ IL Sbjct: 122 CPPRPSEILEAIL 134 >gi|91779764|ref|YP_554972.1| putative hydrogenase/oxidoreductase subunit [Burkholderia xenovorans LB400] gi|91692424|gb|ABE35622.1| putative hydrogenase/oxidoreductase subunit [Burkholderia xenovorans LB400] Length = 177 Score = 87.4 bits (215), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 41/107 (38%), Positives = 63/107 (58%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E+ S P Y++E G ASPR +D+++V G LT M A+ + Y+ P P+ V+ Sbjct: 57 CELEINALSNPYYNIEGLGIRFVASPRHADMLLVTGPLTLNMREAVWQAYEATPHPKLVV 116 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171 + G CA GG + SY+V ++PVD+ +PGCPP ++ GIL Sbjct: 117 ATGECACTGGVFRDSYAVCGPLSTLLPVDVTIPGCPPPPIDILRGIL 163 >gi|15678425|ref|NP_275540.1| formate hydrogenlyase, subunit 7 [Methanothermobacter thermautotrophicus str. Delta H] gi|2621459|gb|AAB84903.1| formate hydrogenlyase, subunit 7 [Methanothermobacter thermautotrophicus str. Delta H] Length = 148 Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 45/133 (33%), Positives = 74/133 (55%), Gaps = 4/133 (3%) Query: 43 VDQLVTWARTGSL---MWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVA 99 +D L + R S+ + T G C +E++ PRYDLE++G +PR++DV++V Sbjct: 2 LDALKSILRKTSIHVCLVNTGGCNGCDIEVLALLSPRYDLEQYGIYVHQNPREADVILVT 61 Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS-YSVVRGCDRIVPVDIYVPG 158 G +T + L+R+Y + PEP+ V+++G+C G ++ SV +PVD VPG Sbjct: 62 GAVTEQWREKLQRIYRKAPEPKIVVALGNCPISGDVFNQEGGSVYAPVSDFIPVDAEVPG 121 Query: 159 CPPTAEALIYGIL 171 CPP ++ IL Sbjct: 122 CPPRPSEILEAIL 134 >gi|297620123|ref|YP_003708228.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanococcus voltae A3] gi|297379100|gb|ADI37255.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanococcus voltae A3] Length = 153 Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 38/113 (33%), Positives = 68/113 (60%), Gaps = 1/113 (0%) Query: 59 TFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMP 118 T G C +E++ A PRYD+E++G +PR++DV++V G + L+ ++D+ P Sbjct: 18 TGGCNGCDIEVVSALAPRYDIEQYGIYVHNNPREADVLVVTGPVVLPWKKRLKEIFDKTP 77 Query: 119 EPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171 EP+ V+++G+CA G + + V D+I+PV+ +PGCPP +I ++ Sbjct: 78 EPKVVVAVGACALSCGIFKEGH-VYGPVDKIIPVNAKLPGCPPRPSEIIEAVV 129 >gi|212223420|ref|YP_002306656.1| Hydrogenase 4, component I or formate hydrogen lyase, subunit 7 [Thermococcus onnurineus NA1] gi|212008377|gb|ACJ15759.1| Hydrogenase 4, component I or formate hydrogen lyase, subunit 7 [Thermococcus onnurineus NA1] Length = 266 Score = 86.7 bits (213), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 46/137 (33%), Positives = 76/137 (55%), Gaps = 23/137 (16%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQM-PEPRYV 123 C +E++ P YD ER G SPR +D ++V+G LT + A++ Y+ M P+PR V Sbjct: 20 CDIEILDVLTPYYDAERLGIKLVPSPRHADALLVSGPLTRQTYYAVKAAYEAMPPKPRIV 79 Query: 124 ISMGSCANGGGYYHYSYSVV-----RGCDRI-------------VPVDIYVPGCPPTAEA 165 +++G+CA+ GG ++ Y + RG DR+ D+Y+PGCPP+ E Sbjct: 80 VAIGTCASSGGIFYNGYPIYNPNPERGSDRLRTGGIEVLLAEYGKKPDMYIPGCPPSPEE 139 Query: 166 LIYGILLL----QKKIR 178 ++YG+ L +KK++ Sbjct: 140 ILYGLAQLLGLKEKKMK 156 >gi|297619767|ref|YP_003707872.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanococcus voltae A3] gi|297378744|gb|ADI36899.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanococcus voltae A3] Length = 147 Score = 86.7 bits (213), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 45/134 (33%), Positives = 79/134 (58%), Gaps = 13/134 (9%) Query: 55 LMWMTFGLACCAVEMMQASM-PRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRV 113 ++ T G C +E++ + P YD E++ +PR++D+++V G +T + ++L+++ Sbjct: 14 MLVYTGGCNGCDIEVVNCVLSPYYDAEQYNVFLTWNPREADILVVTGCVTKTITASLKKI 73 Query: 114 YDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCD-------RIVPVDIYVPGCPPTAEAL 166 Y++MPEP+ V++ G+CA GG Y + + D I+PVD+ VPGCPP E + Sbjct: 74 YEEMPEPKAVVAAGACALMGGVYGNIGADLGTSDFIDGPVKNIIPVDVNVPGCPPRPEDV 133 Query: 167 IYGIL-----LLQK 175 I GI+ LL+K Sbjct: 134 ITGIVKAIPKLLEK 147 >gi|167898184|ref|ZP_02485586.1| putative hydrogenase subunit [Burkholderia pseudomallei 7894] Length = 158 Score = 86.7 bits (213), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 39/97 (40%), Positives = 58/97 (59%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E+ P Y++E G ASPR +D++++ G LT M A+R YD P P+ V+ Sbjct: 57 CELELHALGNPYYNIEGLGIKFVASPRHADMLLITGPLTLNMRDAVRLAYDATPAPKLVV 116 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP 161 + G CA GG + SY+V + +VPVD+ +PGCPP Sbjct: 117 AAGDCACTGGVFAGSYAVCGPIETLVPVDVAIPGCPP 153 >gi|254173900|ref|ZP_04880571.1| hydrogenase-4 component I [Thermococcus sp. AM4] gi|214032149|gb|EEB72980.1| hydrogenase-4 component I [Thermococcus sp. AM4] Length = 187 Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 42/130 (32%), Positives = 71/130 (54%), Gaps = 15/130 (11%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E++ PR D+ER G SPR +D + G +T + + +P+P+ V+ Sbjct: 19 CDIEVLNMFAPRNDVERLGIKLVGSPRHADAIAFTGPITRECLPKVIDALTAVPDPKVVL 78 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIV-----------PVDIYVPGCPPTAEALIYGIL-- 171 ++G+CA GGG ++ +YSV+ G + P +++PGCPP EA+IYG+ Sbjct: 79 AIGACACGGGIWYDTYSVIGGIKELYKILKEEYNIEPPATVFIPGCPPKPEAIIYGVAVA 138 Query: 172 --LLQKKIRR 179 +L+KK R+ Sbjct: 139 RGMLEKKQRK 148 >gi|83717494|ref|YP_439462.1| formate hydrogenlyase subunit 7 [Burkholderia thailandensis E264] gi|167577905|ref|ZP_02370779.1| Formate hydrogenlyase subunit 7 [Burkholderia thailandensis TXDOH] gi|167616030|ref|ZP_02384665.1| Formate hydrogenlyase subunit 7 [Burkholderia thailandensis Bt4] gi|257142585|ref|ZP_05590847.1| formate hydrogenlyase subunit 7 [Burkholderia thailandensis E264] gi|83651319|gb|ABC35383.1| Formate hydrogenlyase subunit 7 [Burkholderia thailandensis E264] Length = 174 Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 42/114 (36%), Positives = 65/114 (57%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E+ P Y++E G ASPR +D++++ G LT M A+R YD P P+ V+ Sbjct: 57 CELELNALGNPYYNIEGLGIKFVASPRHADMLLITGPLTLNMRDAVRLAYDATPAPKLVV 116 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 + G CA GG + SY+V + +VPVD+ + GCPP L+ GI +++R Sbjct: 117 AAGDCACTGGVFAGSYAVCGPVETLVPVDVAIAGCPPRPIDLLRGIRGALERVR 170 >gi|222054796|ref|YP_002537158.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Geobacter sp. FRC-32] gi|221564085|gb|ACM20057.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Geobacter sp. FRC-32] Length = 256 Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 42/101 (41%), Positives = 60/101 (59%) Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 G C ++ S +DL RFG ASPR +D ++V G +T M AL + Y+ +P P Sbjct: 136 GCNACEADVNVLSTVAWDLGRFGIQFVASPRHADGILVTGPVTENMREALLKTYEAVPAP 195 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP 161 + VI+ G+CA GG + S V G D ++PVD+Y+PGCPP Sbjct: 196 KIVIASGACAINGGPFMDSPEVHNGVDGLLPVDLYIPGCPP 236 >gi|212224173|ref|YP_002307409.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit [Thermococcus onnurineus NA1] gi|212009130|gb|ACJ16512.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit [Thermococcus onnurineus NA1] Length = 191 Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 39/117 (33%), Positives = 64/117 (54%), Gaps = 11/117 (9%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E++ PR D+ER G SPR +D + G +T + + +PEP+ V+ Sbjct: 19 CDIEILNIFAPRNDVERLGIKLVGSPRHADAIAFTGPITRECLPKVIDALKAVPEPKVVL 78 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIV-----------PVDIYVPGCPPTAEALIYGI 170 ++G+CA GGG ++ +YSV+ G + P +++PGCPP EA+IYG+ Sbjct: 79 AIGACACGGGIWYDTYSVIGGVKELYRILKEEYNMEPPATVFIPGCPPKPEAIIYGV 135 >gi|288560655|ref|YP_003424141.1| energy-converting hydrogenase A subunit N EhaN [Methanobrevibacter ruminantium M1] gi|288543365|gb|ADC47249.1| energy-converting hydrogenase A subunit N EhaN [Methanobrevibacter ruminantium M1] Length = 153 Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 38/108 (35%), Positives = 63/108 (58%), Gaps = 1/108 (0%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C VE++ PRYDLE++G +PR++DV++V G +T + LRR+Y + PEP+ V+ Sbjct: 27 CDVELVALLSPRYDLEQYGIYVHNNPREADVLLVTGAVTEQWRDNLRRIYAKAPEPKIVV 86 Query: 125 SMGSCANGGGYY-HYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171 ++G+C G + V+ +PVD +PGCPP ++ +L Sbjct: 87 AVGNCPQSGDVFAQEGGRVLAPVSDFIPVDAAIPGCPPRPSEILEAVL 134 >gi|113868177|ref|YP_726666.1| formate hydrogenlyase subunit 7 [Ralstonia eutropha H16] gi|113526953|emb|CAJ93298.1| formate hydrogenlyase subunit 7 [Ralstonia eutropha H16] Length = 174 Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 42/120 (35%), Positives = 65/120 (54%), Gaps = 3/120 (2%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E+ P Y++E G ASPR +D+++V G ++ M AL R Y PEP+ V+ Sbjct: 57 CELEIHALGNPYYNIEGLGIKFVASPRHADMLLVTGPVSRHMEEALLRTYAATPEPKLVV 116 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 ++G C GG + SY+ ++PVDI VPGCPP ++ IL +R+ G + Sbjct: 117 AIGDCGCTGGIFGESYASCGRVANVIPVDITVPGCPPPPIEILRAIL---SAVRQTGATR 173 >gi|164513234|emb|CAP11710.1| NADH dehydrogenase subunit K [Acorus calamus] gi|164513236|emb|CAP11711.1| NADH dehydrogenase subunit K [Acorus gramineus] Length = 72 Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 35/71 (49%), Positives = 54/71 (76%) Query: 58 MTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQM 117 + +G +CC +E R+D +R+G PR+SPRQ+D+++ AGT+T KMA +L R+Y+QM Sbjct: 2 LLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQM 61 Query: 118 PEPRYVISMGS 128 PEP+YVI+MG+ Sbjct: 62 PEPKYVIAMGA 72 >gi|114775564|ref|ZP_01451132.1| hydrogenase subunit [Mariprofundus ferrooxydans PV-1] gi|114553675|gb|EAU56056.1| hydrogenase subunit [Mariprofundus ferrooxydans PV-1] Length = 169 Score = 85.9 bits (211), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 41/108 (37%), Positives = 64/108 (59%), Gaps = 1/108 (0%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E+ + YD+ERFG ASPR +D+++V G ++ M AL Y+ +P+ V+ Sbjct: 56 CELEIHATNNAYYDIERFGIHFTASPRFADMLLVTGPVSVNMRKALEMTYNATSDPKLVV 115 Query: 125 SMGSCA-NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171 +MG CA N G + +Y++ I+PVD+ + GCPPT +I GIL Sbjct: 116 AMGDCAVNCGVFGRDNYAIAGAVSDIIPVDVVIHGCPPTPTDIIRGIL 163 >gi|296241798|ref|YP_003649285.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Thermosphaera aggregans DSM 11486] gi|296094382|gb|ADG90333.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Thermosphaera aggregans DSM 11486] Length = 156 Score = 85.9 bits (211), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 45/128 (35%), Positives = 70/128 (54%), Gaps = 14/128 (10%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E++ P +D ERFG SPR +D +++ G +T + + + P PR VI Sbjct: 22 CDIEILDVLTPFHDAERFGVKLVTSPRHADAILLTGPITAEALPKVINAIEAAPRPRVVI 81 Query: 125 SMGSCANGGGYYHYSYSVVRGC--------DRIVPVDI--YVPGCPPTAEALIYGIL--- 171 ++GSC GGG +H +YS + G ++ V VD YVPGCP EA++Y + Sbjct: 82 ALGSCGVGGGIWHDTYSTIGGIKGLQKILEEKGVKVDAFYYVPGCPIRPEAILYAVALFK 141 Query: 172 -LLQKKIR 178 L+QKK++ Sbjct: 142 GLVQKKVK 149 >gi|303247448|ref|ZP_07333720.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfovibrio fructosovorans JJ] gi|302491144|gb|EFL51036.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfovibrio fructosovorans JJ] Length = 253 Score = 85.5 bits (210), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 42/97 (43%), Positives = 58/97 (59%) Query: 77 YDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY 136 YDL RFG ASPR +D + V G +T M A R +D +P+PR I++G+CA GG + Sbjct: 151 YDLGRFGIDFVASPRHADGVAVTGPVTENMYQATRDTFDAVPDPRLAIAVGACAISGGIF 210 Query: 137 HYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLL 173 S G ++PVD+YVPGCPP ++ G+L L Sbjct: 211 AASAETRGGAPGVMPVDLYVPGCPPHPLTILDGLLRL 247 >gi|119719099|ref|YP_919594.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Thermofilum pendens Hrk 5] gi|119524219|gb|ABL77591.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Thermofilum pendens Hrk 5] Length = 245 Score = 85.5 bits (210), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 44/119 (36%), Positives = 76/119 (63%), Gaps = 4/119 (3%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E+ A P +D+ER G SPR +DV++V G +T + L+ Y+ P+P V+ Sbjct: 30 CDIEVFDALTPYFDVERLGVKLVLSPRMADVILVTGPVTRQFLPVLKATYEAAPKPCVVV 89 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKKIRR 179 + G+CA GGG ++ +Y G D+++PVD+Y+PGCPP A+++G+ +L++K++R Sbjct: 90 ACGACACGGGIWYDTYGTAGGVDKVIPVDVYIPGCPPRPHAILHGVAVALDILEQKVKR 148 >gi|150400803|ref|YP_001324569.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanococcus aeolicus Nankai-3] gi|150013506|gb|ABR55957.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanococcus aeolicus Nankai-3] Length = 153 Score = 85.5 bits (210), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 36/113 (31%), Positives = 66/113 (58%), Gaps = 1/113 (0%) Query: 59 TFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMP 118 T G C +E++ PRYD+E++G +PR++D++++ G +T L +Y++ P Sbjct: 18 TGGCNGCDIELVSTLAPRYDIEQYGVYVHNNPREADILVITGPVTLPWKDKLVEIYEKTP 77 Query: 119 EPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171 EP+ V+++G+CA GG + + + D+ +PVD + GCPP +I +L Sbjct: 78 EPKIVVAVGACALSGGIFKEGH-IYGPVDKFIPVDAKIVGCPPRPSEIIEAVL 129 >gi|148262959|ref|YP_001229665.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Geobacter uraniireducens Rf4] gi|146396459|gb|ABQ25092.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Geobacter uraniireducens Rf4] Length = 263 Score = 85.5 bits (210), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 41/101 (40%), Positives = 59/101 (58%) Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 G C ++ S +DL RFG ASPR +D + V G +T M AL + Y+ +PEP Sbjct: 144 GCNACEADVNVLSTVGFDLGRFGIQFVASPRHADGIFVTGPVTENMREALLKTYEAVPEP 203 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP 161 + VI+ G+CA GG + S G + ++PVD+Y+PGCPP Sbjct: 204 KIVIASGACAINGGPFIDSSEAHNGVEGLLPVDLYIPGCPP 244 >gi|119718689|ref|YP_925654.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Nocardioides sp. JS614] gi|119539350|gb|ABL83967.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Nocardioides sp. JS614] Length = 162 Score = 85.5 bits (210), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 42/103 (40%), Positives = 58/103 (56%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E+ A P YD ER+G ASPR +DV++V G +T+ M LRR + P PR V+ Sbjct: 51 CEIEVGGAFGPVYDAERYGARLVASPRHADVVLVTGVVTHNMLEPLRRTVEATPRPRLVL 110 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALI 167 ++G CA G + Y V V VD+ VPGCPP A++ Sbjct: 111 AVGDCARNCGAFKGGYGVAGAVHDAVDVDLEVPGCPPEPAAIV 153 >gi|225164839|ref|ZP_03727063.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Opitutaceae bacterium TAV2] gi|224800549|gb|EEG18921.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Opitutaceae bacterium TAV2] Length = 294 Score = 85.1 bits (209), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 35/85 (41%), Positives = 57/85 (67%) Query: 77 YDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY 136 +DL RFG ASPR +D +++ G ++ M AL++ +D +P+P+ VI+ G+CA GG + Sbjct: 169 WDLSRFGIQFVASPRHADGLLITGPVSQGMELALKKTWDAVPDPKLVIATGACAISGGPF 228 Query: 137 HYSYSVVRGCDRIVPVDIYVPGCPP 161 + ++ G +VPVD+Y+PGCPP Sbjct: 229 AGNPQILGGASAVVPVDLYIPGCPP 253 >gi|322420679|ref|YP_004199902.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Geobacter sp. M18] gi|320127066|gb|ADW14626.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Geobacter sp. M18] Length = 252 Score = 85.1 bits (209), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 39/85 (45%), Positives = 54/85 (63%) Query: 77 YDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY 136 +D+ RFG ASPR +D + V G +T M AL YD +P P+ VI+ G+CA GG + Sbjct: 151 WDIGRFGLQFVASPRHADALWVTGPVTENMREALMMTYDAIPAPKLVIACGACAINGGPF 210 Query: 137 HYSYSVVRGCDRIVPVDIYVPGCPP 161 S + G DR++PVD+Y+PGCPP Sbjct: 211 IGSPAAHDGVDRLLPVDLYIPGCPP 235 >gi|308513287|ref|NP_951802.3| NAD-dependent dehydrogenase subunit [Geobacter sulfurreducens PCA] gi|39982615|gb|AAR34075.1| NAD-dependent dehydrogenase subunit [Geobacter sulfurreducens PCA] Length = 229 Score = 85.1 bits (209), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 43/118 (36%), Positives = 64/118 (54%) Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 G C + S +DL RFG ASPR +D + V G +T M AL ++ +P P Sbjct: 110 GCNACEADTNVLSTIGWDLGRFGIQFVASPRHADGLWVTGPVTENMREALLMTWEAIPAP 169 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 + V++ G+CA GGG + S G I+PVD+++PGCPP ++ G+L L +I Sbjct: 170 KIVVACGACAIGGGPFADSPETHNGVADILPVDLFIPGCPPHPATILDGLLRLIGRIE 227 >gi|118578783|ref|YP_900033.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Pelobacter propionicus DSM 2379] gi|118501493|gb|ABK97975.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Pelobacter propionicus DSM 2379] Length = 252 Score = 85.1 bits (209), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 43/118 (36%), Positives = 65/118 (55%) Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 G C + S +DL RFG ASPR +D + + G ++ M AL Y +P+P Sbjct: 135 GCNACEADTNVLSTIGWDLGRFGIQFVASPRHADGLFITGPVSENMRLALLDTYAAIPDP 194 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 + VI G+CA GG + V G D ++ VD+Y+PGCPP+ ++ G+L L ++IR Sbjct: 195 KLVIVTGACAINGGPFKDHDEVCNGADGLLAVDLYIPGCPPSPLTILDGLLRLIRRIR 252 >gi|86160078|ref|YP_466863.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Anaeromyxobacter dehalogenans 2CP-C] gi|85776589|gb|ABC83426.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Anaeromyxobacter dehalogenans 2CP-C] Length = 256 Score = 85.1 bits (209), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 45/121 (37%), Positives = 69/121 (57%), Gaps = 3/121 (2%) Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 G + C E+ + ++D+ RFG ASPR +D ++V G +T M ALR+ ++ +P P Sbjct: 136 GCSGCEAELNASGNIQFDVGRFGVQFVASPRHADGLVVTGPVTENMRLALRQTWEAVPAP 195 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRI---VPVDIYVPGCPPTAEALIYGILLLQKKI 177 R VI++G+CA GG + S G +PVD+YVPGCPP + GIL L ++ Sbjct: 196 RIVIAVGACAISGGPFAGSPVTCGGAAAALDGIPVDLYVPGCPPHPITFLDGILRLLGRL 255 Query: 178 R 178 + Sbjct: 256 K 256 >gi|255565794|ref|XP_002523886.1| NADH-ubiquinone oxidoreductase I subunit j, putative [Ricinus communis] gi|223536816|gb|EEF38455.1| NADH-ubiquinone oxidoreductase I subunit j, putative [Ricinus communis] Length = 188 Score = 84.7 bits (208), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 39/75 (52%), Positives = 55/75 (73%), Gaps = 1/75 (1%) Query: 106 MASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPVDIYVPGCPPTAE 164 MA +L R+Y+Q+PEP+YVI+MG+C GG + SYS +RG D+++PVD Y+ GCPP E Sbjct: 1 MAPSLVRLYEQIPEPKYVIAMGACTITGGMFSTDSYSTIRGVDKLIPVDAYLSGCPPKPE 60 Query: 165 ALIYGILLLQKKIRR 179 A+I I L+KK+ R Sbjct: 61 AVIDAITKLRKKLSR 75 >gi|307721952|ref|YP_003893092.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Sulfurimonas autotrophica DSM 16294] gi|306980045|gb|ADN10080.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Sulfurimonas autotrophica DSM 16294] Length = 168 Score = 84.7 bits (208), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 37/113 (32%), Positives = 65/113 (57%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C E S P YDLER G ASPR +DVM+++G +T M + Y+Q+P+P++VI Sbjct: 56 CEAECNALSNPYYDLERLGIYFVASPRHADVMLLSGLMTFNMTPHVLEAYEQIPKPKWVI 115 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 ++G C + ++++ ++ + + ++ GCPP+ ++ G+L KKI Sbjct: 116 TLGDCPVMAAPFEKTFAIKAPANKHLKITHHITGCPPSPREIMQGLLEFLKKI 168 >gi|162149080|ref|YP_001603541.1| NADH-quinone oxidoreductase subunit B [Gluconacetobacter diazotrophicus PAl 5] gi|161787657|emb|CAP57253.1| putative NADH-quinone oxidoreductase chain B [Gluconacetobacter diazotrophicus PAl 5] Length = 166 Score = 84.7 bits (208), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 46/125 (36%), Positives = 73/125 (58%), Gaps = 1/125 (0%) Query: 47 VTWARTGSLMWM-TFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNK 105 VT AR ++ + T G CA+E+ Y L G A A+PR ++V++V G LT Sbjct: 19 VTGARPLAVFHVETGGCEGCAMEVAALDGAAYGLPATGIAFVATPRLAEVLLVTGPLTRA 78 Query: 106 MASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEA 165 MA L + MPEPR ++++G+CA GG + +Y+V+ G + +D+ VPGCPP+ A Sbjct: 79 MAPVLEAAWHAMPEPRALVAVGACAIDGGPFPENYAVLGGLEGRATLDVTVPGCPPSPAA 138 Query: 166 LIYGI 170 ++ G+ Sbjct: 139 ILAGL 143 >gi|164513246|emb|CAP11716.1| NADH dehydrogenase subunit K [Betula insignis] gi|164513248|emb|CAP11717.1| NADH dehydrogenase subunit K [Betula pendula] Length = 67 Score = 84.3 bits (207), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 35/67 (52%), Positives = 51/67 (76%) Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 G +CC +E R+D +R+G PR+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP Sbjct: 1 GTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEP 60 Query: 121 RYVISMG 127 +YVI+MG Sbjct: 61 KYVIAMG 67 >gi|308271021|emb|CBX27631.1| hypothetical protein N47_H24530 [uncultured Desulfobacterium sp.] Length = 263 Score = 84.3 bits (207), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 43/118 (36%), Positives = 65/118 (55%) Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 G C + S +D+ RFG ASPR +D +++ G +T M AL + Y +PEP Sbjct: 138 GCNACEADSNVLSTLAWDMGRFGIQFVASPRHADGLLITGPVTENMRIALEKTYAAVPEP 197 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 + VI++GSCA GG + G IVPVD+++PGCPP ++ G+L +I+ Sbjct: 198 KIVIAVGSCAISGGPFIDHPEQHNGAMDIVPVDLFIPGCPPHPLTILDGLLRFIGRIK 255 >gi|220918887|ref|YP_002494191.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Anaeromyxobacter dehalogenans 2CP-1] gi|219956741|gb|ACL67125.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Anaeromyxobacter dehalogenans 2CP-1] Length = 259 Score = 84.3 bits (207), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 44/121 (36%), Positives = 69/121 (57%), Gaps = 3/121 (2%) Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 G + C E+ + ++D+ RFG ASPR +D +++ G +T M ALR+ ++ +P P Sbjct: 139 GCSGCEAELNASGNIQFDVGRFGVQFVASPRHADGLVITGPVTENMRLALRQTWEAVPAP 198 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRI---VPVDIYVPGCPPTAEALIYGILLLQKKI 177 R VI++G+CA GG + S G +PVD+YVPGCPP + GIL L ++ Sbjct: 199 RIVIAVGACAISGGPFAGSPVTCGGAAAALDGIPVDLYVPGCPPHPITFLDGILRLLGRL 258 Query: 178 R 178 + Sbjct: 259 K 259 >gi|330834667|ref|YP_004409395.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Metallosphaera cuprina Ar-4] gi|329566806|gb|AEB94911.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Metallosphaera cuprina Ar-4] Length = 203 Score = 84.3 bits (207), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 42/114 (36%), Positives = 64/114 (56%), Gaps = 8/114 (7%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E S P+YD+ RFG +P+ +D +IV G L+ KM+ LR+ YD MPEP+ VI Sbjct: 98 CNLEFRLISAPQYDMTRFGIFFVNTPKHADALIVMGNLSEKMSKVLRKAYDVMPEPKLVI 157 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 +G+CA GG V G + ++ VPGCPPT +++ ++ + R Sbjct: 158 LIGTCAISGG--------VTGIPPDIKGNVIVPGCPPTPSSILDALIAAKGDKR 203 >gi|303244684|ref|ZP_07331016.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanothermococcus okinawensis IH1] gi|302484992|gb|EFL47924.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanothermococcus okinawensis IH1] Length = 148 Score = 84.3 bits (207), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 43/127 (33%), Positives = 73/127 (57%), Gaps = 8/127 (6%) Query: 59 TFGLACCAVEMMQASM-PRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQM 117 T G C +E++ + P YD E++ +PR++D+++V+G +T M L+++Y+ + Sbjct: 18 TGGCNGCDIEVVNCVLSPFYDAEQYNVLLTWNPREADILVVSGCVTKVMTEPLKKIYEAI 77 Query: 118 PEPRYVISMGSCA-------NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGI 170 PEP+ V+++G CA N GG S + + I+PVD+ VPGCPP E +I GI Sbjct: 78 PEPKAVVAVGCCALMGGVYGNIGGDLGTSDWIDGPVENIIPVDVKVPGCPPRPEDVIQGI 137 Query: 171 LLLQKKI 177 + K+ Sbjct: 138 VQALPKV 144 >gi|298504862|gb|ADI83585.1| Ech-hydrogenase-related complex, small subunit [Geobacter sulfurreducens KN400] Length = 251 Score = 84.3 bits (207), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 43/118 (36%), Positives = 64/118 (54%) Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 G C + S +DL RFG ASPR +D + V G +T M AL ++ +P P Sbjct: 132 GCNACEADTNVLSTIGWDLGRFGIQFVASPRHADGLWVTGPVTENMREALLMTWEAIPAP 191 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 + V++ G+CA GGG + S G I+PVD+++PGCPP ++ G+L L +I Sbjct: 192 KIVVACGACAIGGGPFAGSPEAHNGVADILPVDLFIPGCPPHPATILDGLLRLIGRIE 249 >gi|256830388|ref|YP_003159116.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfomicrobium baculatum DSM 4028] gi|256579564|gb|ACU90700.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfomicrobium baculatum DSM 4028] Length = 263 Score = 84.3 bits (207), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 41/119 (34%), Positives = 66/119 (55%) Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 G C ++ +DL RFG ASPR +D +++ G +T M AL++ + +PEP Sbjct: 142 GCGACEADINVLGTIGWDLGRFGIQYVASPRHADGVLITGPVTKGMELALQKTWAAVPEP 201 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179 R I++G+CA GG + G D I+P+D+Y+PGCPP ++ G L L ++ + Sbjct: 202 RIAIALGACAISGGPFIGHPQHNGGADPIIPIDLYIPGCPPHPLTILDGFLRLLGRLPK 260 >gi|197124107|ref|YP_002136058.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Anaeromyxobacter sp. K] gi|196173956|gb|ACG74929.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Anaeromyxobacter sp. K] Length = 256 Score = 84.3 bits (207), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 44/121 (36%), Positives = 69/121 (57%), Gaps = 3/121 (2%) Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 G + C E+ + ++D+ RFG ASPR +D +++ G +T M ALR+ ++ +P P Sbjct: 136 GCSGCEAELNASGNIQFDVGRFGVQFVASPRHADGLVITGPVTENMRLALRQTWEAVPAP 195 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRI---VPVDIYVPGCPPTAEALIYGILLLQKKI 177 R VI++G+CA GG + S G +PVD+YVPGCPP + GIL L ++ Sbjct: 196 RIVIAVGACAISGGPFAGSPVTCGGAAAALDGIPVDLYVPGCPPHPITFLDGILRLLGRL 255 Query: 178 R 178 + Sbjct: 256 K 256 >gi|209545176|ref|YP_002277405.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Gluconacetobacter diazotrophicus PAl 5] gi|209532853|gb|ACI52790.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Gluconacetobacter diazotrophicus PAl 5] Length = 166 Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 46/125 (36%), Positives = 73/125 (58%), Gaps = 1/125 (0%) Query: 47 VTWARTGSLMWM-TFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNK 105 VT AR ++ + T G CA+E+ Y L G A A+PR ++V++V G LT Sbjct: 19 VTGARPLAVFHVETGGCEGCAMEVAALDGAAYGLPATGIAFVATPRLAEVLLVTGPLTRA 78 Query: 106 MASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEA 165 MA L + MPEPR ++++G+CA GG + +Y+V+ G + +D+ VPGCPP+ A Sbjct: 79 MAPVLEAAWHAMPEPRALVAVGACAIDGGPFPENYAVLGGLEGRATLDMTVPGCPPSPAA 138 Query: 166 LIYGI 170 ++ G+ Sbjct: 139 ILAGL 143 >gi|218661622|ref|ZP_03517552.1| NADH dehydrogenase subunit B [Rhizobium etli IE4771] Length = 74 Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 36/48 (75%), Positives = 41/48 (85%) Query: 23 DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMM 70 DA F I++E+ KGFLVTS D+L+ WARTGSLMWMTFGLACCAVEMM Sbjct: 27 DAFFGEINNELADKGFLVTSTDELINWARTGSLMWMTFGLACCAVEMM 74 >gi|220904047|ref|YP_002479359.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219868346|gb|ACL48681.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 254 Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 38/99 (38%), Positives = 61/99 (61%) Query: 77 YDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY 136 +DL RFG ASPR +D +++ G ++ M A Y+ PEPR V+++G+CA GG + Sbjct: 156 FDLPRFGIDFVASPRHADGIVLTGPVSENMRLAAIDTYNATPEPRLVVAVGACAISGGLF 215 Query: 137 HYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175 + G I+PVD++VPGCPP ++ G+L+L++ Sbjct: 216 RDAPQCNNGIADILPVDLFVPGCPPNPWTILDGLLMLRE 254 >gi|88603352|ref|YP_503530.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Methanospirillum hungatei JF-1] gi|88188814|gb|ABD41811.1| membrane-bound hydrogenase subunit ehaN [Methanospirillum hungatei JF-1] Length = 150 Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 37/108 (34%), Positives = 64/108 (59%), Gaps = 1/108 (0%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E++ PRYDLE++G +PR++DV+++ G +T + LR V+D++PEP+ + Sbjct: 29 CDIEVLACLSPRYDLEQYGIYVHNNPREADVLLIIGGVTPQWEDKLRMVWDKIPEPKVAV 88 Query: 125 SMGSCANGGGYYHYSYSVVRGCDR-IVPVDIYVPGCPPTAEALIYGIL 171 S+G+C G + ++ R + +P+ VPGCPP +I IL Sbjct: 89 SIGNCPISGCVFSRPQTLTRAPAKSYIPIAAEVPGCPPRPTEIIQAIL 136 >gi|261856376|ref|YP_003263659.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Halothiobacillus neapolitanus c2] gi|261836845|gb|ACX96612.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Halothiobacillus neapolitanus c2] Length = 274 Score = 83.2 bits (204), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 48/117 (41%), Positives = 73/117 (62%), Gaps = 1/117 (0%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C E+ P Y+L R G SPR +D+++V G +T M L R ++ MPEPR+V+ Sbjct: 151 CESEISALLNPFYNLHRLGVFFTPSPRFADLLLVTGPVTEVMREPLLRTFEAMPEPRWVM 210 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL-LLQKKIRRV 180 ++G+CA GGG Y+ +G D I+PVDI++PGCPP A+I +L LL ++ ++V Sbjct: 211 ALGTCATGGGTNGGGYACHQGLDGILPVDIWLPGCPPNPAAIIEALLVLLDRRPQQV 267 >gi|153006624|ref|YP_001380949.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Anaeromyxobacter sp. Fw109-5] gi|152030197|gb|ABS27965.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Anaeromyxobacter sp. Fw109-5] Length = 256 Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 51/154 (33%), Positives = 77/154 (50%), Gaps = 15/154 (9%) Query: 39 LVTSVDQLVTWARTGSLMWMTFGLAC------------CAVEMMQASMPRYDLERFGFAP 86 LV D+ V A + M FG + C E+ A ++DL RFG Sbjct: 102 LVVRGDEPVLAAALDAEMRRVFGRSLKLRQVSAAGCNGCEAELNAAGNIQFDLGRFGIQF 161 Query: 87 RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGC 146 ASPR +D ++V G ++ M AL++ Y+ +P PR VI++G+CA GG + S G Sbjct: 162 VASPRHADGIVVTGPVSENMRLALQKTYEAVPAPRLVIAVGACAISGGVFRESPVSCGGA 221 Query: 147 DRIVP---VDIYVPGCPPTAEALIYGILLLQKKI 177 +P VD+YVPGCPP + G+L + ++ Sbjct: 222 AAALPGVRVDLYVPGCPPHPITFLDGMLRMLGRL 255 >gi|302879581|ref|YP_003848145.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Gallionella capsiferriformans ES-2] gi|302582370|gb|ADL56381.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Gallionella capsiferriformans ES-2] Length = 171 Score = 82.0 bits (201), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 39/108 (36%), Positives = 64/108 (59%), Gaps = 1/108 (0%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E+ + Y+LE G ASPR +D+++V G ++ M AL+R Y+ P+P+ V+ Sbjct: 57 CELEIHAVNNAYYNLEGLGIKFVASPRHADMLLVTGPVSRHMEVALKRTYEATPDPKLVV 116 Query: 125 SMGSCA-NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171 ++G CA NGG + +Y+ ++ VD+ V GCPPT A++ IL Sbjct: 117 AIGECACNGGIFGTDNYASCGNIANVISVDVAVSGCPPTPVAILQAIL 164 >gi|283853523|ref|ZP_06370764.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfovibrio sp. FW1012B] gi|283571104|gb|EFC19123.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfovibrio sp. FW1012B] Length = 253 Score = 82.0 bits (201), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 41/113 (36%), Positives = 63/113 (55%) Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 G C ++ + +DL RFG ASPR +D + V G +T M +A R +D +P+P Sbjct: 135 GCNACEADLNVLTTVVFDLGRFGIDFVASPRHADGVAVTGPVTVNMLAATRATFDAVPDP 194 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLL 173 R I++G+CA GG + S G +PVD+++PGCPP ++ G+L L Sbjct: 195 RVAIAVGACAISGGVFAGSPETTGGATPHLPVDLFIPGCPPHPLTILDGLLSL 247 >gi|51244894|ref|YP_064778.1| hydrogenase, component I-formate hydrogenlyase subunit 7 [Desulfotalea psychrophila LSv54] gi|50875931|emb|CAG35771.1| related to hydrogenase, component I-formate hydrogenlyase subunit 7 [Desulfotalea psychrophila LSv54] Length = 248 Score = 82.0 bits (201), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 39/111 (35%), Positives = 62/111 (55%) Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 G C + + P +DL RFG ASPR +D + V G +++ M AL Y+ + P Sbjct: 134 GCNSCEADTNVLNTPFFDLSRFGIDFVASPRHADGLHVTGPISHNMRQALITTYEAVASP 193 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171 + VI+ G C+ GG ++ S VV + ++PVD+Y+PGCPP ++ +L Sbjct: 194 KVVIASGCCSISGGPFYGSSEVVGDLNSLLPVDLYIPGCPPHPLTTLHALL 244 >gi|254167339|ref|ZP_04874191.1| NADH ubiquinone oxidoreductase, 20 Kd subunit family [Aciduliprofundum boonei T469] gi|197623602|gb|EDY36165.1| NADH ubiquinone oxidoreductase, 20 Kd subunit family [Aciduliprofundum boonei T469] Length = 179 Score = 81.6 bits (200), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 40/109 (36%), Positives = 60/109 (55%), Gaps = 12/109 (11%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C E+ + P+YDL R GF PR +D+++V G T KM L+ Y+QMPEP+ V+ Sbjct: 77 CNREISLLNSPQYDLHRLGFFFTPVPRHADILLVIGEPTEKMIPVLKEAYEQMPEPKIVM 136 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLL 173 + G+CAN ++I+ VD V GCPP A++ +L+L Sbjct: 137 TAGACAN------------EKIEKIIKVDARVSGCPPQPIAILKALLML 173 >gi|325959025|ref|YP_004290491.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanobacterium sp. AL-21] gi|325330457|gb|ADZ09519.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanobacterium sp. AL-21] Length = 149 Score = 81.3 bits (199), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 38/114 (33%), Positives = 64/114 (56%), Gaps = 1/114 (0%) Query: 59 TFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMP 118 T G C +E++ PRYDLE++G +PR++DV+++ G L + L+++Y + P Sbjct: 21 TGGCNGCDIEVVALLSPRYDLEQYGIYVHNNPREADVLLITGALAEQWKDKLQKIYAKTP 80 Query: 119 EPRYVISMGSCANGGGYYHYSYSVVRG-CDRIVPVDIYVPGCPPTAEALIYGIL 171 EP+ V+++G+C G ++ S V +PVD V GCPP ++ IL Sbjct: 81 EPKVVVAIGNCPLTGDVFNQEGSSVNAPVSDYIPVDAEVSGCPPRPTEILAAIL 134 >gi|331664272|ref|ZP_08365178.1| formate hydrogenlyase subunit 7 (FHL subunit 7) (Hydrogenase-3component G) [Escherichia coli TA143] gi|331058203|gb|EGI30184.1| formate hydrogenlyase subunit 7 (FHL subunit 7) (Hydrogenase-3component G) [Escherichia coli TA143] Length = 171 Score = 80.9 bits (198), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 39/86 (45%), Positives = 51/86 (59%), Gaps = 4/86 (4%) Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGC 159 G +T M S R + P+P+ IS G+C N GG +H Y V G D+IVPVD+Y+PGC Sbjct: 2 GAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGC 61 Query: 160 PPTAEALIYGIL----LLQKKIRRVG 181 PPT A +YG LL++KI G Sbjct: 62 PPTPAATLYGFAMALGLLEQKIHARG 87 >gi|89902050|ref|YP_524521.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Rhodoferax ferrireducens T118] gi|89346787|gb|ABD70990.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Rhodoferax ferrireducens T118] Length = 254 Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 44/114 (38%), Positives = 67/114 (58%), Gaps = 2/114 (1%) Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 G + C +E+ S +DL R+G ASPR +D ++++G +T MA AL+ +D +PEP Sbjct: 137 GCSGCEMEINALSNVNFDLGRYGIDIVASPRHADALVLSGPITRNMAQALQICWDAIPEP 196 Query: 121 RYVISMGSCANGGGYYHYSYSVVRG-CDRIVPVDIYVPGCPPTAEALIYGILLL 173 + VI++G+CA GG + S ++ R D P +YVPGCP I GI+ L Sbjct: 197 KLVIAVGACAISGGVFADSDALDRQFLDNFKPA-LYVPGCPAHPLTFISGIMDL 249 >gi|126179131|ref|YP_001047096.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Methanoculleus marisnigri JR1] gi|125861925|gb|ABN57114.1| membrane-bound hydrogenase subunit ehaN [Methanoculleus marisnigri JR1] Length = 151 Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 34/108 (31%), Positives = 65/108 (60%), Gaps = 1/108 (0%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E++ PRYD+E++G +PR++DV++V G++T + LR ++D++PEP+ + Sbjct: 29 CDIEVLACLAPRYDIEQYGIYVHNNPREADVLLVIGSVTPQWVDKLRDIWDKIPEPKVAV 88 Query: 125 SMGSCANGGGYYHYSYSVVR-GCDRIVPVDIYVPGCPPTAEALIYGIL 171 ++G+C G Y ++ ++ +P+ VPGCPP ++ IL Sbjct: 89 AIGNCPISGCVYARRGTLTSPPVEKYIPIAAQVPGCPPRPTEILNAIL 136 >gi|15839463|ref|NP_334500.1| NADH-ubiquinone oxidoreductase, 20 Kd subunit [Mycobacterium tuberculosis CDC1551] gi|31791260|ref|NP_853753.1| oxidoreductase [Mycobacterium bovis AF2122/97] gi|121635995|ref|YP_976218.1| putative oxidoreductase [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148659844|ref|YP_001281367.1| putative oxidoreductase [Mycobacterium tuberculosis H37Ra] gi|148821274|ref|YP_001286028.1| oxidoreductase [Mycobacterium tuberculosis F11] gi|167970613|ref|ZP_02552890.1| hypothetical oxidoreductase [Mycobacterium tuberculosis H37Ra] gi|215406072|ref|ZP_03418253.1| oxidoreductase [Mycobacterium tuberculosis 02_1987] gi|215425279|ref|ZP_03423198.1| oxidoreductase [Mycobacterium tuberculosis T92] gi|215432997|ref|ZP_03430916.1| oxidoreductase [Mycobacterium tuberculosis EAS054] gi|215448360|ref|ZP_03435112.1| oxidoreductase [Mycobacterium tuberculosis T85] gi|218755809|ref|ZP_03534605.1| oxidoreductase [Mycobacterium tuberculosis GM 1503] gi|219555867|ref|ZP_03534943.1| oxidoreductase [Mycobacterium tuberculosis T17] gi|224988468|ref|YP_002643155.1| putative oxidoreductase [Mycobacterium bovis BCG str. Tokyo 172] gi|253797000|ref|YP_003030001.1| oxidoreductase [Mycobacterium tuberculosis KZN 1435] gi|254233481|ref|ZP_04926807.1| hypothetical protein TBCG_00083 [Mycobacterium tuberculosis C] gi|254366540|ref|ZP_04982584.1| hypothetical oxidoreductase [Mycobacterium tuberculosis str. Haarlem] gi|254549015|ref|ZP_05139462.1| oxidoreductase [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260184939|ref|ZP_05762413.1| oxidoreductase [Mycobacterium tuberculosis CPHL_A] gi|260199078|ref|ZP_05766569.1| oxidoreductase [Mycobacterium tuberculosis T46] gi|260203226|ref|ZP_05770717.1| oxidoreductase [Mycobacterium tuberculosis K85] gi|289441451|ref|ZP_06431195.1| oxidoreductase [Mycobacterium tuberculosis T46] gi|289445612|ref|ZP_06435356.1| oxidoreductase [Mycobacterium tuberculosis CPHL_A] gi|289552333|ref|ZP_06441543.1| oxidoreductase [Mycobacterium tuberculosis KZN 605] gi|289567972|ref|ZP_06448199.1| oxidoreductase [Mycobacterium tuberculosis T17] gi|289572662|ref|ZP_06452889.1| oxidoreductase [Mycobacterium tuberculosis K85] gi|289747849|ref|ZP_06507227.1| oxidoreductase [Mycobacterium tuberculosis 02_1987] gi|289748549|ref|ZP_06507927.1| oxidoreductase [Mycobacterium tuberculosis T92] gi|289756143|ref|ZP_06515521.1| oxidoreductase [Mycobacterium tuberculosis EAS054] gi|289760181|ref|ZP_06519559.1| NADH-ubiquinone oxidoreductase [Mycobacterium tuberculosis T85] gi|289764198|ref|ZP_06523576.1| NADH-ubiquinone oxidoreductase [Mycobacterium tuberculosis GM 1503] gi|294995700|ref|ZP_06801391.1| oxidoreductase [Mycobacterium tuberculosis 210] gi|297632555|ref|ZP_06950335.1| oxidoreductase [Mycobacterium tuberculosis KZN 4207] gi|297729528|ref|ZP_06958646.1| oxidoreductase [Mycobacterium tuberculosis KZN R506] gi|306778376|ref|ZP_07416713.1| oxidoreductase [Mycobacterium tuberculosis SUMu001] gi|306778908|ref|ZP_07417245.1| oxidoreductase [Mycobacterium tuberculosis SUMu002] gi|306782697|ref|ZP_07421019.1| oxidoreductase [Mycobacterium tuberculosis SUMu003] gi|306787063|ref|ZP_07425385.1| oxidoreductase [Mycobacterium tuberculosis SUMu004] gi|306791621|ref|ZP_07429923.1| oxidoreductase [Mycobacterium tuberculosis SUMu005] gi|306795684|ref|ZP_07433986.1| oxidoreductase [Mycobacterium tuberculosis SUMu006] gi|306801659|ref|ZP_07438327.1| oxidoreductase [Mycobacterium tuberculosis SUMu008] gi|306970266|ref|ZP_07482927.1| oxidoreductase [Mycobacterium tuberculosis SUMu009] gi|306974499|ref|ZP_07487160.1| oxidoreductase [Mycobacterium tuberculosis SUMu010] gi|307082207|ref|ZP_07491377.1| oxidoreductase [Mycobacterium tuberculosis SUMu011] gi|307082548|ref|ZP_07491661.1| oxidoreductase [Mycobacterium tuberculosis SUMu012] gi|313656856|ref|ZP_07813736.1| oxidoreductase [Mycobacterium tuberculosis KZN V2475] gi|13879137|gb|AAK44314.1| NADH-ubiquinone oxidoreductase, 20 Kd subunit [Mycobacterium tuberculosis CDC1551] gi|31616845|emb|CAD92947.1| PROBABLE OXIDOREDUCTASE [Mycobacterium bovis AF2122/97] gi|121491642|emb|CAL70100.1| Probable oxidoreductase [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|124603274|gb|EAY61549.1| hypothetical protein TBCG_00083 [Mycobacterium tuberculosis C] gi|134152052|gb|EBA44097.1| hypothetical oxidoreductase [Mycobacterium tuberculosis str. Haarlem] gi|148503996|gb|ABQ71805.1| putative oxidoreductase [Mycobacterium tuberculosis H37Ra] gi|148719801|gb|ABR04426.1| hypothetical oxidoreductase [Mycobacterium tuberculosis F11] gi|224771581|dbj|BAH24387.1| putative oxidoreductase [Mycobacterium bovis BCG str. Tokyo 172] gi|253318503|gb|ACT23106.1| oxidoreductase [Mycobacterium tuberculosis KZN 1435] gi|289414370|gb|EFD11610.1| oxidoreductase [Mycobacterium tuberculosis T46] gi|289418570|gb|EFD15771.1| oxidoreductase [Mycobacterium tuberculosis CPHL_A] gi|289436965|gb|EFD19458.1| oxidoreductase [Mycobacterium tuberculosis KZN 605] gi|289537093|gb|EFD41671.1| oxidoreductase [Mycobacterium tuberculosis K85] gi|289541725|gb|EFD45374.1| oxidoreductase [Mycobacterium tuberculosis T17] gi|289688377|gb|EFD55865.1| oxidoreductase [Mycobacterium tuberculosis 02_1987] gi|289689136|gb|EFD56565.1| oxidoreductase [Mycobacterium tuberculosis T92] gi|289696730|gb|EFD64159.1| oxidoreductase [Mycobacterium tuberculosis EAS054] gi|289711704|gb|EFD75720.1| NADH-ubiquinone oxidoreductase [Mycobacterium tuberculosis GM 1503] gi|289715745|gb|EFD79757.1| NADH-ubiquinone oxidoreductase [Mycobacterium tuberculosis T85] gi|308213367|gb|EFO72766.1| oxidoreductase [Mycobacterium tuberculosis SUMu001] gi|308328111|gb|EFP16962.1| oxidoreductase [Mycobacterium tuberculosis SUMu002] gi|308332461|gb|EFP21312.1| oxidoreductase [Mycobacterium tuberculosis SUMu003] gi|308336250|gb|EFP25101.1| oxidoreductase [Mycobacterium tuberculosis SUMu004] gi|308339839|gb|EFP28690.1| oxidoreductase [Mycobacterium tuberculosis SUMu005] gi|308343833|gb|EFP32684.1| oxidoreductase [Mycobacterium tuberculosis SUMu006] gi|308351559|gb|EFP40410.1| oxidoreductase [Mycobacterium tuberculosis SUMu008] gi|308352244|gb|EFP41095.1| oxidoreductase [Mycobacterium tuberculosis SUMu009] gi|308356201|gb|EFP45052.1| oxidoreductase [Mycobacterium tuberculosis SUMu010] gi|308360154|gb|EFP49005.1| oxidoreductase [Mycobacterium tuberculosis SUMu011] gi|308367717|gb|EFP56568.1| oxidoreductase [Mycobacterium tuberculosis SUMu012] gi|323717424|gb|EGB26629.1| oxidoreductase [Mycobacterium tuberculosis CDC1551A] gi|326905842|gb|EGE52775.1| oxidoreductase [Mycobacterium tuberculosis W-148] gi|328456789|gb|AEB02212.1| oxidoreductase [Mycobacterium tuberculosis KZN 4207] Length = 159 Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 46/112 (41%), Positives = 64/112 (57%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C VE+ A P YD ERFG ASPR +D ++V G +T+ MA LR+ + P PR VI Sbjct: 48 CEVEISGAFGPVYDAERFGARLVASPRHADALLVTGVVTHNMAGPLRKTLEATPRPRVVI 107 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKK 176 + G CA G + +Y VV +VPVD+ + GCPPT A++ + + K Sbjct: 108 ACGDCALNRGVFADAYGVVGAVGEVVPVDVEIAGCPPTPAAIMAALRSVTGK 159 >gi|182414283|ref|YP_001819349.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Opitutus terrae PB90-1] gi|177841497|gb|ACB75749.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Opitutus terrae PB90-1] Length = 285 Score = 80.1 bits (196), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 38/85 (44%), Positives = 54/85 (63%) Query: 77 YDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY 136 +DL RFG ASPR +D ++V G ++ M ALR+ ++ MP P+ VI++G+ A GG + Sbjct: 179 WDLGRFGIQFVASPRHADGLVVTGPVSKGMELALRKTWEAMPAPKIVIAVGAEAISGGVF 238 Query: 137 HYSYSVVRGCDRIVPVDIYVPGCPP 161 V G D IVPVD+Y+PG PP Sbjct: 239 AGHPQVRNGVDAIVPVDLYIPGWPP 263 >gi|325958030|ref|YP_004289496.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanobacterium sp. AL-21] gi|325329462|gb|ADZ08524.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanobacterium sp. AL-21] Length = 148 Score = 80.1 bits (196), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 46/134 (34%), Positives = 72/134 (53%), Gaps = 12/134 (8%) Query: 55 LMWMTFGLACCAVEMMQASM-PRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRV 113 ++ T G C +E++ + P+YD E++ +PR++DV++V G +T LR + Sbjct: 15 MLVYTGGCNGCDIEIVNCVLSPKYDAEQYKVFLTWNPREADVLVVTGPVTRHNEKPLREI 74 Query: 114 YDQMPEPRYVISMGSCANGGGYYHY------SYSVVRGCDRIVPVDIYVPGCPPTAEALI 167 YD +PEP+ VI+ G+CA GG Y S ++ D I+PVD VPGC E ++ Sbjct: 75 YDAIPEPKAVIAAGACALMGGVYKNIHGDIPSEEIMGPVDNIIPVDAKVPGCAVRPEDVL 134 Query: 168 YGI-----LLLQKK 176 G+ LLL K Sbjct: 135 SGVVSALPLLLDAK 148 >gi|304315372|ref|YP_003850519.1| energy-converting hydrogenase B, subunit M [Methanothermobacter marburgensis str. Marburg] gi|5734564|emb|CAB52790.1| hydrogenase small subunit [Methanothermobacter thermautotrophicus] gi|302588831|gb|ADL59206.1| energy-converting hydrogenase B, subunit M [Methanothermobacter marburgensis str. Marburg] Length = 148 Score = 80.1 bits (196), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 42/131 (32%), Positives = 73/131 (55%), Gaps = 7/131 (5%) Query: 54 SLMWMTFGLACCAVEMMQASM-PRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRR 112 +++ T G C +E++ A + P+YD E++ +PR++DV+IV G +T + L+ Sbjct: 14 AMLVYTGGCNGCDIEIVNAVLSPKYDAEQYKIFLTWNPREADVLIVTGPVTKQNEGPLKE 73 Query: 113 VYDQMPEPRYVISMGSCANGGGYYHY------SYSVVRGCDRIVPVDIYVPGCPPTAEAL 166 +Y+ +PEP+ VI+ G+CA GG Y S + D+++PVD VPGC E + Sbjct: 74 IYNAIPEPKAVIAAGACALMGGVYKNIHGDIPSEEICGPVDKVIPVDAKVPGCAVRPEDV 133 Query: 167 IYGILLLQKKI 177 + G + K+ Sbjct: 134 LAGAVAALPKL 144 >gi|108708858|gb|ABF96653.1| NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial precursor, putative [Oryza sativa Japonica Group] Length = 86 Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 39/72 (54%), Positives = 47/72 (65%), Gaps = 4/72 (5%) Query: 58 MTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQM 117 MTFGLAC AVEMM A RYD +RFG SPRQSD MI+ GTLTNKM ALR+ Sbjct: 1 MTFGLACFAVEMMHAGASRYDFDRFGVIFHPSPRQSDCMIITGTLTNKMVPALRKAL--- 57 Query: 118 PEPRYVISMGSC 129 P + +++ +C Sbjct: 58 -IPTFNVNLETC 68 >gi|150401781|ref|YP_001325547.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanococcus aeolicus Nankai-3] gi|150014484|gb|ABR56935.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanococcus aeolicus Nankai-3] Length = 146 Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 43/127 (33%), Positives = 71/127 (55%), Gaps = 8/127 (6%) Query: 59 TFGLACCAVEMMQASM-PRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQM 117 T G C ++++ + P YD E++ +PR++D+++V+G +T M L+ +Y+ + Sbjct: 18 TGGCNGCDIDIVNCVLSPFYDAEQYNVFLTWNPREADILLVSGCVTKVMTEPLKEIYEAI 77 Query: 118 PEPRYVISMGSCANGGGYYHY------SYSVVRG-CDRIVPVDIYVPGCPPTAEALIYGI 170 PEP+ V+++G CA GG Y + + G I+PVDI VPGC P E +I GI Sbjct: 78 PEPKAVVAVGCCALMGGVYANIGGDLGTSDFIDGPVKNIIPVDINVPGCSPRPEDIIQGI 137 Query: 171 LLLQKKI 177 + KI Sbjct: 138 VQALPKI 144 >gi|254166691|ref|ZP_04873545.1| NADH ubiquinone oxidoreductase, 20 Kd subunit family [Aciduliprofundum boonei T469] gi|289596449|ref|YP_003483145.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Aciduliprofundum boonei T469] gi|197624301|gb|EDY36862.1| NADH ubiquinone oxidoreductase, 20 Kd subunit family [Aciduliprofundum boonei T469] gi|289534236|gb|ADD08583.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Aciduliprofundum boonei T469] Length = 179 Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 38/109 (34%), Positives = 59/109 (54%), Gaps = 12/109 (11%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C E+ P+YD+ R GF PR +D+++V G T KM L+ Y+QMP+P+ V+ Sbjct: 77 CNREISLLGAPQYDMNRLGFFFTPVPRHADILLVIGEPTEKMIPVLKEAYEQMPKPKIVV 136 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLL 173 + G+CAN ++I+ VD V GCPP A++ +L+L Sbjct: 137 TAGACAN------------EKIEKIIKVDARVSGCPPQPIAILKALLML 173 >gi|146304195|ref|YP_001191511.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Metallosphaera sedula DSM 5348] gi|145702445|gb|ABP95587.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Metallosphaera sedula DSM 5348] Length = 203 Score = 79.0 bits (193), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 38/115 (33%), Positives = 63/115 (54%), Gaps = 8/115 (6%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E+ S P+YD+ RFG +P+ +D +++ G L +M +RR YD +P P+ VI Sbjct: 97 CNLELRLISSPQYDMTRFGIFFTNTPKHADALLIMGNLGKRMEEVIRRAYDVIPSPKLVI 156 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179 +G+CA GG V G + D+ VPGCPPT +++ ++ + R+ Sbjct: 157 LLGTCAISGG--------VTGIPPDIRGDVIVPGCPPTPASILDALIKAKGGDRK 203 >gi|15679250|ref|NP_276367.1| formate hydrogenlyase, subunit 7 [Methanothermobacter thermautotrophicus str. Delta H] gi|2622351|gb|AAB85728.1| formate hydrogenlyase, subunit 7 [Methanothermobacter thermautotrophicus str. Delta H] Length = 148 Score = 78.6 bits (192), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 42/131 (32%), Positives = 72/131 (54%), Gaps = 7/131 (5%) Query: 54 SLMWMTFGLACCAVEMMQASM-PRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRR 112 +++ T G C +E++ A P+YD E++ +PR++DV+IV G +T + L+ Sbjct: 14 AMLVYTGGCNGCDIEIVNAVFSPKYDAEQYKIFLTWNPREADVLIVTGPVTKQNEEPLKA 73 Query: 113 VYDQMPEPRYVISMGSCANGGGYYHY------SYSVVRGCDRIVPVDIYVPGCPPTAEAL 166 +Y+ +PEP+ VI+ G+CA GG Y S + D+++PVD VPGC E + Sbjct: 74 IYNAIPEPKAVIAAGACALMGGVYKNIHGDIPSEEICGPVDKVIPVDAKVPGCAVRPEDV 133 Query: 167 IYGILLLQKKI 177 + G + K+ Sbjct: 134 LAGAVAALPKL 144 >gi|15607224|ref|NP_214596.1| oxidoreductase [Mycobacterium tuberculosis H37Rv] gi|2808739|emb|CAA16263.1| PROBABLE OXIDOREDUCTASE [Mycobacterium tuberculosis H37Rv] Length = 159 Score = 78.6 bits (192), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 45/112 (40%), Positives = 64/112 (57%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C VE+ A P YD ERFG ASP+ +D ++V G +T+ MA LR+ + P PR VI Sbjct: 48 CEVEISGAFGPVYDAERFGARLVASPQHADALLVTGVVTHNMAGPLRKTLEATPRPRVVI 107 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKK 176 + G CA G + +Y VV +VPVD+ + GCPPT A++ + + K Sbjct: 108 ACGDCALNRGVFADAYGVVGAVGEVVPVDVEIAGCPPTPAAIMAALRSVTGK 159 >gi|331694628|ref|YP_004330867.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Pseudonocardia dioxanivorans CB1190] gi|326949317|gb|AEA23014.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Pseudonocardia dioxanivorans CB1190] Length = 161 Score = 78.6 bits (192), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 43/108 (39%), Positives = 63/108 (58%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E+ A P YD ER+G ASPR +D ++V G +T M LRR Y+ + EP+ V+ Sbjct: 50 CELEIGAAFGPVYDAERYGARLVASPRHADALVVTGAVTRNMVEPLRRTYEAVGEPKVVV 109 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILL 172 ++G CA G + +Y VV +VPVD+ V GCPP E ++ + L Sbjct: 110 AVGDCARNCGVFAEAYGVVGAVADVVPVDLEVVGCPPRPETIVAALRL 157 >gi|197116467|ref|YP_002136894.1| iron-sulfur cluster-binding domain-containing hydrogenase subunit [Geobacter bemidjiensis Bem] gi|197085827|gb|ACH37098.1| hydrogenase subunit, iron-sulfur cluster-binding domain-containing protein [Geobacter bemidjiensis Bem] Length = 332 Score = 77.8 bits (190), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 37/107 (34%), Positives = 64/107 (59%), Gaps = 1/107 (0%) Query: 65 CAVEM-MQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYV 123 C VE+ + A++ +D+E+ G P ++D++++ G LT + + R+Y + PE + Sbjct: 26 CDVELAVTAAVDEFDVEQLGCRYTEEPHEADILLITGPLTVRARNEALRLYAEAPETKVT 85 Query: 124 ISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGI 170 +++G C GG + SY+V R +PVD+ VPGCPP +AL+ GI Sbjct: 86 VAVGVCPVSGGVFRDSYAVDGPVQRYLPVDLNVPGCPPRPQALLAGI 132 >gi|215413939|ref|ZP_03422601.1| oxidoreductase [Mycobacterium tuberculosis 94_M4241A] gi|298527474|ref|ZP_07014883.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A] gi|298497268|gb|EFI32562.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A] Length = 159 Score = 77.4 bits (189), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 45/112 (40%), Positives = 63/112 (56%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C VE+ A P YD RFG ASPR +D ++V G +T+ MA LR+ + P PR VI Sbjct: 48 CEVEISGAFGPVYDAGRFGARLVASPRHADALLVTGVVTHNMAGPLRKTLEATPRPRVVI 107 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKK 176 + G CA G + +Y VV +VPVD+ + GCPPT A++ + + K Sbjct: 108 ACGDCALNRGVFADAYGVVGAVGEVVPVDVEIAGCPPTPAAIMAALRSVTGK 159 >gi|164513250|emb|CAP11718.1| NADH dehydrogenase subunit K [Coffea mauritiana] gi|164513252|emb|CAP11719.1| NADH dehydrogenase subunit K [Coffea myrtifolia] Length = 61 Score = 77.4 bits (189), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 31/52 (59%), Positives = 45/52 (86%) Query: 76 RYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMG 127 R+D +R+G PR+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG Sbjct: 10 RFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMG 61 >gi|222625140|gb|EEE59272.1| hypothetical protein OsJ_11297 [Oryza sativa Japonica Group] Length = 89 Score = 77.4 bits (189), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 37/55 (67%), Positives = 40/55 (72%) Query: 58 MTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRR 112 MTFGLAC AVEMM A RYD +RFG SPRQSD MI+ GTLTNKM ALR+ Sbjct: 1 MTFGLACFAVEMMHAGASRYDFDRFGVIFHPSPRQSDCMIITGTLTNKMVPALRK 55 >gi|164513242|emb|CAP11714.1| NADH dehydrogenase subunit K [Begonia conchifolia] gi|164513244|emb|CAP11715.1| NADH dehydrogenase subunit K [Begonia plagioneura] Length = 56 Score = 77.4 bits (189), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 31/52 (59%), Positives = 45/52 (86%) Query: 76 RYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMG 127 R+D +R+G PR+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG Sbjct: 5 RFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMG 56 >gi|197119557|ref|YP_002139984.1| Ech-hydrogenase-like complex small subunit [Geobacter bemidjiensis Bem] gi|197088917|gb|ACH40188.1| Ech-hydrogenase-related complex, small subunit [Geobacter bemidjiensis Bem] Length = 252 Score = 77.0 bits (188), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 36/85 (42%), Positives = 52/85 (61%) Query: 77 YDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY 136 +DL RFG ASPR +D + V G +T M AL Y+ +P P+ V++ G+CA GG + Sbjct: 151 WDLGRFGIQFVASPRHADGLWVTGPVTEHMREALLLTYEAIPAPKLVVACGACAISGGPF 210 Query: 137 HYSYSVVRGCDRIVPVDIYVPGCPP 161 S G + ++PVD+Y+PGCPP Sbjct: 211 RGSPEAHDGVEGMLPVDLYIPGCPP 235 >gi|296116642|ref|ZP_06835252.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Gluconacetobacter hansenii ATCC 23769] gi|295976854|gb|EFG83622.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Gluconacetobacter hansenii ATCC 23769] Length = 148 Score = 77.0 bits (188), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 41/121 (33%), Positives = 66/121 (54%), Gaps = 7/121 (5%) Query: 59 TFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMP 118 T G A CA+E+ +P D G SPR +D+++VAG +T M L + + MP Sbjct: 19 TGGCAGCAMELAALDVPADDAGCKGICFVRSPRHADILLVAGPVTRAMVPVLEQAWQAMP 78 Query: 119 EPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 PR ++++G CA GG + +Y+V+ G V +D+ +PGCPP+ + ++Q I Sbjct: 79 GPRALMAIGDCAIDGGMFGENYAVLGGLRGRVHLDLSLPGCPPSPD-------MIQSAIT 131 Query: 179 R 179 R Sbjct: 132 R 132 >gi|332295482|ref|YP_004437405.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Thermodesulfobium narugense DSM 14796] gi|332178585|gb|AEE14274.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Thermodesulfobium narugense DSM 14796] Length = 140 Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 32/106 (30%), Positives = 59/106 (55%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E++ RYD+ER G SP+ +D+ +V G +T + L ++YD +P P+ ++ Sbjct: 24 CDIEIVALFASRYDVERLGCKLVGSPKHADICLVTGPVTARSKEPLLKIYDMLPNPKVIV 83 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGI 170 +G+C+ G + YS+V +++PV YV GC + + G+ Sbjct: 84 CVGACSISSGVFTDGYSIVGPAHKLIPVTAYVGGCSAHPKNIFLGL 129 >gi|239905427|ref|YP_002952166.1| putative hydrogenase-4 component I [Desulfovibrio magneticus RS-1] gi|239795291|dbj|BAH74280.1| putative hydrogenase-4 component I [Desulfovibrio magneticus RS-1] Length = 258 Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 38/97 (39%), Positives = 55/97 (56%) Query: 77 YDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY 136 +DL RFG ASPR +D + V G +T M A + +P+PR I++G+CA GG + Sbjct: 152 FDLGRFGIDFVASPRHADGVAVTGPVTRNMLEATLGTFAAVPDPRVGIAIGTCAISGGLF 211 Query: 137 HYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLL 173 S G +PVD+Y+PGCPP ++ G+L L Sbjct: 212 AGSPETTGGATPHLPVDLYIPGCPPHPLTILDGLLRL 248 >gi|255021729|ref|ZP_05293769.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Acidithiobacillus caldus ATCC 51756] gi|254968869|gb|EET26391.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Acidithiobacillus caldus ATCC 51756] Length = 264 Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 36/98 (36%), Positives = 55/98 (56%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C E+ P Y+L R G SPR +D+++V G +T M L ++ MPEPR V+ Sbjct: 140 CESEIGALDNPFYNLHRLGIFFTPSPRFADLLMVTGPVTAPMHGPLLATWEAMPEPRMVL 199 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162 + G+CA G Y+ G + ++PVD+++PGCPP Sbjct: 200 ATGTCAVSGAPMDGGYAGGSGLNALLPVDVWLPGCPPN 237 >gi|253699704|ref|YP_003020893.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Geobacter sp. M21] gi|251774554|gb|ACT17135.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Geobacter sp. M21] Length = 252 Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 35/85 (41%), Positives = 52/85 (61%) Query: 77 YDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY 136 +D+ RFG ASPR +D + V G +T M AL Y+ +P P+ V++ G+CA GG + Sbjct: 151 WDIGRFGIQFVASPRHADGLWVTGPVTEHMREALLMTYEAIPAPKLVVACGACAISGGPF 210 Query: 137 HYSYSVVRGCDRIVPVDIYVPGCPP 161 S G + ++PVD+Y+PGCPP Sbjct: 211 RGSPEAHDGVEGMLPVDLYIPGCPP 235 >gi|307353348|ref|YP_003894399.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanoplanus petrolearius DSM 11571] gi|307156581|gb|ADN35961.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanoplanus petrolearius DSM 11571] Length = 160 Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 33/116 (28%), Positives = 66/116 (56%), Gaps = 1/116 (0%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E++ PRYDLE++G +PR++DV+++ G L + L +++++PEP+ I Sbjct: 29 CDIEILACLSPRYDLEQYGIYVHNNPREADVLLITGALCEQWDDKLVSLWEKIPEPKAAI 88 Query: 125 SMGSCANGGGYYHYSYSVVR-GCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179 ++G+C G ++ S V + +P+ +PGCPP ++ IL + ++ + Sbjct: 89 TIGNCPVSGCVFNRRGSYVNPPVSKHIPIAASIPGCPPRPSEIVSTILSIAPEVFK 144 >gi|257077039|ref|ZP_05571400.1| Ni,Fe-hydrogenase III small subunit [Ferroplasma acidarmanus fer1] Length = 199 Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 40/112 (35%), Positives = 57/112 (50%), Gaps = 8/112 (7%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C VE P+YD RF +PR +D ++V G T+ M + L+ YD MP P+ VI Sbjct: 95 CNVEFTTLFSPQYDTNRFKIFMSNTPRHADALVVMGVYTDGMEAVLKEAYDAMPSPKIVI 154 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKK 176 +G+CA GG + G + DI V GCPPT ++I I+ + K Sbjct: 155 GIGACALSGG--------IIGSRAMDKYDIEVAGCPPTPASIINAIIKARGK 198 >gi|212704381|ref|ZP_03312509.1| hypothetical protein DESPIG_02436 [Desulfovibrio piger ATCC 29098] gi|212672102|gb|EEB32585.1| hypothetical protein DESPIG_02436 [Desulfovibrio piger ATCC 29098] Length = 265 Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 37/100 (37%), Positives = 59/100 (59%) Query: 77 YDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY 136 YDL +FG ASPR +D ++V G ++ M A+ + +PEPR I++GSCA GG + Sbjct: 162 YDLGKFGINFVASPRHADGILVTGPVSRNMREAVLATWAAVPEPRIAIAVGSCAISGGLF 221 Query: 137 HYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKK 176 S G + V ++VPGCPP+ +++ G+L L+ + Sbjct: 222 ADSDECCGGLPPLCDVQLFVPGCPPSPWSILDGLLRLKSE 261 >gi|78221590|ref|YP_383337.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Geobacter metallireducens GS-15] gi|78192845|gb|ABB30612.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Geobacter metallireducens GS-15] Length = 262 Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 41/119 (34%), Positives = 66/119 (55%) Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 G C + S +DL RFG ASPR +D + + G +T M AL + ++ +PEP Sbjct: 144 GCNACEADTNVLSTVGFDLGRFGIQFVASPRHADGIFITGPVTENMHLALLKTWEAIPEP 203 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179 + I+ G+CA GG + S V G D ++P+D+Y+PGCPP ++ G+L + ++ Sbjct: 204 KIAIAAGACAINGGPFIDSPDVHNGADGLIPIDLYIPGCPPHPLTILDGLLRILGRLEE 262 >gi|15897890|ref|NP_342495.1| formate hydrogenlyase subunit 7 (hycG) [Sulfolobus solfataricus P2] gi|227827480|ref|YP_002829260.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Sulfolobus islandicus M.14.25] gi|229578987|ref|YP_002837385.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Sulfolobus islandicus Y.G.57.14] gi|229582260|ref|YP_002840659.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Sulfolobus islandicus Y.N.15.51] gi|229584694|ref|YP_002843196.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Sulfolobus islandicus M.16.27] gi|284173589|ref|ZP_06387558.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Sulfolobus solfataricus 98/2] gi|13814203|gb|AAK41285.1| Formate hydrogenlyase subunit 7 (hycG) [Sulfolobus solfataricus P2] gi|227459276|gb|ACP37962.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Sulfolobus islandicus M.14.25] gi|228009701|gb|ACP45463.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Sulfolobus islandicus Y.G.57.14] gi|228012976|gb|ACP48737.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Sulfolobus islandicus Y.N.15.51] gi|228019744|gb|ACP55151.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Sulfolobus islandicus M.16.27] gi|261602599|gb|ACX92202.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Sulfolobus solfataricus 98/2] Length = 201 Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 37/114 (32%), Positives = 61/114 (53%), Gaps = 12/114 (10%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E+ S P YD+ RF +PR +D ++V G +T KM L++ Y+ MPEP+ VI Sbjct: 98 CNMELKLISSPEYDMTRFSIFFTNTPRHADALVVMGVMTEKMKEVLKKAYEAMPEPKVVI 157 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVD--IYVPGCPPTAEALIYGILLLQKK 176 +G+CA GG VP++ + +PGCPP ++ ++ ++ K Sbjct: 158 LLGACAISGGIIGEG----------VPLEAVVEIPGCPPNPFTILEALMKVKGK 201 >gi|227830172|ref|YP_002831952.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Sulfolobus islandicus L.S.2.15] gi|227456620|gb|ACP35307.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Sulfolobus islandicus L.S.2.15] Length = 201 Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 37/114 (32%), Positives = 61/114 (53%), Gaps = 12/114 (10%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E+ S P YD+ RF +PR +D ++V G +T KM L++ Y+ MPEP+ VI Sbjct: 98 CNMELKLISSPEYDMTRFSIFFTNTPRHADALVVMGVMTEKMKEVLKKAYEAMPEPKVVI 157 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVD--IYVPGCPPTAEALIYGILLLQKK 176 +G+CA GG VP++ + +PGCPP ++ ++ ++ K Sbjct: 158 LLGACAISGGIIGEG----------VPLEAVVEIPGCPPNPFTILEALMKVKGK 201 >gi|212224722|ref|YP_002307958.1| Hydrogenase 4, component I or formate hydrogen lyase, subunit 7 [Thermococcus onnurineus NA1] gi|212009679|gb|ACJ17061.1| Hydrogenase 4, component I or formate hydrogen lyase, subunit 7 [Thermococcus onnurineus NA1] Length = 273 Score = 75.9 bits (185), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 45/144 (31%), Positives = 70/144 (48%), Gaps = 32/144 (22%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMP-EPRYV 123 C +E++ P YD+ERFG SPR + ++V+G LT + + MP EPR + Sbjct: 23 CDIEIIDVLTPFYDVERFGIKLVGSPRHAHALLVSGPLTRQAYYGAKETIKAMPPEPRVI 82 Query: 124 ISMGSCANGGGYYHYSYSVVR--------------------------GCDRIVPVDIYVP 157 +++G+C GG ++ Y V R +++ PV IY+P Sbjct: 83 VAIGTCTCSGGIFYNGYPVYRRPESGREGSEYPRRGGIAELIADLRDEGEKVGPV-IYIP 141 Query: 158 GCPPTAEALIYGIL----LLQKKI 177 GCPP E +IYGI L++KK+ Sbjct: 142 GCPPRPEEIIYGIAQLVGLVEKKL 165 >gi|124485396|ref|YP_001030012.1| hypothetical protein Mlab_0571 [Methanocorpusculum labreanum Z] gi|124362937|gb|ABN06745.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Methanocorpusculum labreanum Z] Length = 159 Score = 75.5 bits (184), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 33/108 (30%), Positives = 64/108 (59%), Gaps = 1/108 (0%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E++ P+YD+E++G +PR++DV++V G ++ + L ++D++PEP+ V+ Sbjct: 29 CDIEILACLAPKYDIEQYGIYVHNNPREADVILVTGGMSPQWLDKLPDLWDRVPEPKAVV 88 Query: 125 SMGSCANGGGYYHYSYSVVR-GCDRIVPVDIYVPGCPPTAEALIYGIL 171 ++G+C G ++ ++ + +PV VPGCPP +I IL Sbjct: 89 TIGNCPISGCVFNRPGKLIDPPVSKYIPVTAAVPGCPPRPSEIISAIL 136 >gi|164513238|emb|CAP11712.1| NADH dehydrogenase subunit K [Aglaia korthalsii] gi|164513240|emb|CAP11713.1| NADH dehydrogenase subunit K [Aglaia odoratissima] Length = 60 Score = 75.1 bits (183), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 30/51 (58%), Positives = 44/51 (86%) Query: 76 RYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISM 126 R+D +R+G PR+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+M Sbjct: 10 RFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAM 60 >gi|195953675|ref|YP_002121965.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Hydrogenobaculum sp. Y04AAS1] gi|195933287|gb|ACG57987.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Hydrogenobaculum sp. Y04AAS1] Length = 165 Score = 75.1 bits (183), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 38/108 (35%), Positives = 55/108 (50%), Gaps = 1/108 (0%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C E+ S YD+ERFG ASP+ DV+ + G +T M L P P+ +I Sbjct: 53 CEYELTALSNVFYDIERFGIKFVASPKHVDVLTITGPITRNMYKPLLDAIQNTPNPKVII 112 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRI-VPVDIYVPGCPPTAEALIYGIL 171 ++G C+ GG + +Y +V G I + I + GCPP +I GIL Sbjct: 113 AIGDCSIDGGLFKGAYGIVGGLKDINIEPHILIRGCPPHPRDIISGIL 160 >gi|84490226|ref|YP_448458.1| EhbM [Methanosphaera stadtmanae DSM 3091] gi|84373545|gb|ABC57815.1| EhbM [Methanosphaera stadtmanae DSM 3091] Length = 150 Score = 75.1 bits (183), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 39/136 (28%), Positives = 76/136 (55%), Gaps = 10/136 (7%) Query: 46 LVTWARTGSLMWM---TFGLACCAVEMMQASM-PRYDLERFGFAPRASPRQSDVMIVAGT 101 L + AR ++ M T G C +E++ + P++D+E++ +PR++DV++V+G Sbjct: 3 LKSQARKKAIHLMLVYTGGCNGCDIEIVNTVLSPKFDIEQYNVYLTWNPREADVLVVSGP 62 Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY------SYSVVRGCDRIVPVDIY 155 +T L ++Y+ +P+P+ V+++G+CA GG Y S + D ++PVD Sbjct: 63 VTYWTKEPLLKIYEAIPKPKLVVAVGACALTGGVYKNIHGEIPSEEIEGPVDNVIPVDAK 122 Query: 156 VPGCPPTAEALIYGIL 171 +PGC E ++ G++ Sbjct: 123 IPGCAVRPEDVVAGVV 138 >gi|323474538|gb|ADX85144.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Sulfolobus islandicus REY15A] Length = 201 Score = 75.1 bits (183), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 36/112 (32%), Positives = 60/112 (53%), Gaps = 12/112 (10%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E+ S P YD+ RF +PR +D ++V G +T KM L++ Y+ MPEP+ VI Sbjct: 98 CNMELKLISSPEYDMTRFSIFFTNTPRHADALVVMGVMTEKMKEVLKKAYEAMPEPKVVI 157 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVD--IYVPGCPPTAEALIYGILLLQ 174 +G+CA GG VP++ + +PGCPP ++ ++ ++ Sbjct: 158 LLGACAISGGIIGEG----------VPLEAVVEIPGCPPNPFTILEALMKVK 199 >gi|323477271|gb|ADX82509.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Sulfolobus islandicus HVE10/4] Length = 201 Score = 74.7 bits (182), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 36/112 (32%), Positives = 60/112 (53%), Gaps = 12/112 (10%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E+ S P YD+ RF +PR +D ++V G +T KM L++ Y+ MPEP+ VI Sbjct: 98 CNMELKLISSPEYDMTRFSIFFTNTPRHADALVVMGVMTEKMKEVLKKAYEAMPEPKVVI 157 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVD--IYVPGCPPTAEALIYGILLLQ 174 +G+CA GG VP++ + +PGCPP ++ ++ ++ Sbjct: 158 LLGACAISGGIIGEG----------VPLEAVVEIPGCPPNPFTILEALMKVK 199 >gi|164513254|emb|CAP11720.1| NADH dehydrogenase subunit K [Dioscorea bulbifera] gi|164513256|emb|CAP11721.1| NADH dehydrogenase subunit K [Dioscorea schimperiana] Length = 52 Score = 74.3 bits (181), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 30/52 (57%), Positives = 44/52 (84%) Query: 78 DLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSC 129 D +R+G PR+SPRQ+D+++ AGT+T KMA +L R+Y+QM EP+YVI+MG+C Sbjct: 1 DFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMAEPKYVIAMGAC 52 >gi|148643124|ref|YP_001273637.1| energy-converting hydrogenase B, subunit M, EhbM [Methanobrevibacter smithii ATCC 35061] gi|222445361|ref|ZP_03607876.1| hypothetical protein METSMIALI_00989 [Methanobrevibacter smithii DSM 2375] gi|261350078|ref|ZP_05975495.1| putative hydrogenase, group 4, EchC subunit [Methanobrevibacter smithii DSM 2374] gi|148552141|gb|ABQ87269.1| energy-converting hydrogenase B, subunit M, EhbM [Methanobrevibacter smithii ATCC 35061] gi|222434926|gb|EEE42091.1| hypothetical protein METSMIALI_00989 [Methanobrevibacter smithii DSM 2375] gi|288860864|gb|EFC93162.1| putative hydrogenase, group 4, EchC subunit [Methanobrevibacter smithii DSM 2374] Length = 148 Score = 74.3 bits (181), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 43/136 (31%), Positives = 73/136 (53%), Gaps = 8/136 (5%) Query: 50 ARTGSLMWM-TFGLACCAVEMMQASM-PRYDLERFGFAPRASPRQSDVMIVAGTLTNKMA 107 AR LM + T G C +E++ + + PR+D E++ +PR++DV++V G +T Sbjct: 9 ARAIHLMLVYTGGCNGCDIEIVNSVLSPRFDAEQYKVFLTWNPREADVLVVTGPVTKLNR 68 Query: 108 SALRRVYDQMPEPRYVISMGSCANGGGYYHY------SYSVVRGCDRIVPVDIYVPGCPP 161 L +Y +PEP+ V++ GSCA GG Y S + + I+PVD VPGC Sbjct: 69 KPLEEIYKAIPEPKLVVAAGSCALMGGVYKNIHGDIPSEEIEGPVENIIPVDAKVPGCAV 128 Query: 162 TAEALIYGILLLQKKI 177 + ++ G++ + K+ Sbjct: 129 RPQDVLSGVVSILPKL 144 >gi|288561258|ref|YP_003424744.1| energy-converting hydrogenase B subunit M EhbM [Methanobrevibacter ruminantium M1] gi|288543968|gb|ADC47852.1| energy-converting hydrogenase B subunit M EhbM [Methanobrevibacter ruminantium M1] Length = 148 Score = 74.3 bits (181), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 40/136 (29%), Positives = 75/136 (55%), Gaps = 10/136 (7%) Query: 46 LVTWARTGSLMWM---TFGLACCAVEMMQASM-PRYDLERFGFAPRASPRQSDVMIVAGT 101 L T +R+ ++ M T G C +E++ A + P++D+E++G +PR++D+++V G Sbjct: 3 LKTLSRSKAIHIMLVYTGGCNGCDIEIVNAVLSPKFDMEQYGVFLTWNPREADILVVTGP 62 Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY------SYSVVRGCDRIVPVDIY 155 +T L +Y+ +P P+ V++ GSCA GG Y S + + ++PVD Sbjct: 63 VTYDNRKPLEDIYNAIPNPKLVVAAGSCALMGGVYKNCHGDIPSEEIEGPVENVIPVDAK 122 Query: 156 VPGCPPTAEALIYGIL 171 VPGC + ++ G++ Sbjct: 123 VPGCAVRPQDVLAGVV 138 >gi|183981668|ref|YP_001849959.1| oxidoreductase [Mycobacterium marinum M] gi|183174994|gb|ACC40104.1| oxidoreductase [Mycobacterium marinum M] Length = 159 Score = 73.9 bits (180), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 45/106 (42%), Positives = 61/106 (57%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C VE+ A P YD ERFG ASPR +D ++V G +T MA L+ P+PR VI Sbjct: 48 CEVEISGAFGPVYDAERFGARLVASPRHADALLVTGVVTRNMAQPLKNTLAATPQPRVVI 107 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGI 170 + G CA G + +Y VV +VPVD+ VPGCPPT + ++ + Sbjct: 108 ACGDCALNRGVFADAYGVVGAVSEVVPVDVEVPGCPPTPDQVVAAL 153 >gi|269128891|ref|YP_003302261.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Thermomonospora curvata DSM 43183] gi|268313849|gb|ACZ00224.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Thermomonospora curvata DSM 43183] Length = 158 Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 43/100 (43%), Positives = 61/100 (61%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E+ P +D ER+G ASPR +D ++V G +T M +ALRR Y+ +PEP+ VI Sbjct: 47 CELEIASVFGPVHDAERYGARLVASPRHADALLVTGPVTRNMETALRRTYEAVPEPKVVI 106 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164 ++G CA G + +Y V +VPVD+ VPGCPP E Sbjct: 107 ALGDCARNCGVFAGAYGVAGAVGDVVPVDVEVPGCPPRPE 146 >gi|294340395|emb|CAZ88776.1| Putative NADH ubiquinone oxidoreductase, 20 kDa subunit [Thiomonas sp. 3As] Length = 273 Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 41/98 (41%), Positives = 59/98 (60%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C E+ P Y+L R G SPR +D+++V G +T M L R Y+ MP+PR+V+ Sbjct: 149 CESELQALLNPFYNLHRLGVFFTPSPRFADLLLVTGPVTAAMREPLLRTYEAMPQPRWVM 208 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162 + G+CA GGG Y+ G D I+PVD+++PGCPP Sbjct: 209 AAGTCATGGGTNGGGYACHEGLDGILPVDVWLPGCPPN 246 >gi|284997591|ref|YP_003419358.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Sulfolobus islandicus L.D.8.5] gi|284445486|gb|ADB86988.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Sulfolobus islandicus L.D.8.5] Length = 201 Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 36/114 (31%), Positives = 60/114 (52%), Gaps = 12/114 (10%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E+ S P YD+ RF +PR +D ++V G +T KM L++ Y+ MPEP+ VI Sbjct: 98 CNMELKLISSPEYDMTRFSIFFTNTPRHADALVVMGVMTEKMKEVLKKAYEAMPEPKVVI 157 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVD--IYVPGCPPTAEALIYGILLLQKK 176 +G+CA GG VP++ + + GCPP ++ ++ ++ K Sbjct: 158 LLGACAISGGIIGEG----------VPLEAVVEISGCPPNPFTILEALMKVKGK 201 >gi|238619636|ref|YP_002914462.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Sulfolobus islandicus M.16.4] gi|238380706|gb|ACR41794.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Sulfolobus islandicus M.16.4] Length = 201 Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 36/114 (31%), Positives = 60/114 (52%), Gaps = 12/114 (10%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E+ S P YD+ RF +PR +D ++V G +T KM L++ Y+ M EP+ VI Sbjct: 98 CNMELKLISSPEYDMTRFSIFFTNTPRHADALVVMGVMTEKMKEVLKKAYEAMQEPKVVI 157 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVD--IYVPGCPPTAEALIYGILLLQKK 176 +G+CA GG VP++ + +PGCPP ++ ++ ++ K Sbjct: 158 LLGACAISGGIIGEG----------VPLEAVVEIPGCPPNPFTILEALMKVKGK 201 >gi|164513262|emb|CAP11724.1| NADH dehydrogenase subunit K [Paeonia kavachensis] gi|164513264|emb|CAP11725.1| NADH dehydrogenase [Paeonia tenuifolia] gi|164513266|emb|CAP11726.1| NADH dehydrogenase [Sophora microphylla] gi|164513268|emb|CAP11727.1| NADH dehydrogenase [Sophora toromiro] Length = 63 Score = 71.6 bits (174), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 29/62 (46%), Positives = 45/62 (72%) Query: 58 MTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQM 117 + +G +CC +E R+D +R+G PR+SPRQ+D+++ AGT+T KMA +L R+Y+QM Sbjct: 2 LLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQM 61 Query: 118 PE 119 PE Sbjct: 62 PE 63 >gi|164513258|emb|CAP11722.1| NADH dehydrogenase subunit K [Hieracium leyianum] gi|164513260|emb|CAP11723.1| NADH dehydrogenase subunit K [Hieracium pellucidum] Length = 61 Score = 71.6 bits (174), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 29/60 (48%), Positives = 44/60 (73%) Query: 60 FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119 +G +CC +E R+D +R+G PR+SPRQ+D+++ AGT+T KMA +L R+Y+QMPE Sbjct: 2 YGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPE 61 >gi|73658458|emb|CAI99039.1| NADH dehydrogenase 32 kD subunit [Arabidopsis thaliana] gi|73658460|emb|CAI99042.1| NADH dehydrogenase 32 kD subunit [Arabidopsis thaliana] Length = 114 Score = 71.6 bits (174), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 33/60 (55%), Positives = 44/60 (73%), Gaps = 1/60 (1%) Query: 121 RYVISMGSCANGGGYYHY-SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179 +YVI+MG+C GG + SYS VRG D+++PVD+Y+PGCPP EA+I I L+KKI R Sbjct: 1 KYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKKIAR 60 >gi|118617491|ref|YP_905823.1| oxidoreductase [Mycobacterium ulcerans Agy99] gi|118569601|gb|ABL04352.1| oxidoreductase [Mycobacterium ulcerans Agy99] Length = 159 Score = 71.2 bits (173), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 44/106 (41%), Positives = 60/106 (56%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C VE+ A P YD ER G ASPR +D ++V G +T MA L+ P+PR VI Sbjct: 48 CEVEISGAFGPVYDAERVGARLVASPRHADALLVTGVVTRNMAQPLKNTLAATPQPRVVI 107 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGI 170 + G CA G + +Y VV +VPVD+ VPGCPPT + ++ + Sbjct: 108 ACGDCALNRGVFADAYGVVGAVSEVVPVDVEVPGCPPTPDQVVAAL 153 >gi|13542288|ref|NP_111976.1| Ni,Fe-hydrogenase III small subunit [Thermoplasma volcanium GSS1] gi|14325721|dbj|BAB60624.1| formate hydrogenlyase subunit 2 [Thermoplasma volcanium GSS1] Length = 222 Score = 70.9 bits (172), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 41/116 (35%), Positives = 59/116 (50%), Gaps = 6/116 (5%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E + P+YD R G +PR +D +IV G +T M AL R Y+ MPEP+ VI Sbjct: 102 CNMEFLSIFSPQYDANRLGIFMVNTPRYADALIVMGVMTPGMKEALDRAYEAMPEPKLVI 161 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 +MG+CA GG + DR ++ + GCPP+ LI + K R+ Sbjct: 162 AMGACAVTGGIMGEN-----PLDR-EKYNVEIAGCPPSPYTLIAALNAAMKDKRKA 211 >gi|244280|gb|AAB21279.1| NADH:ubiquinone oxidoreductase (complex I) iron-sulfur protein fraction 20 kda polypeptide peptides T-4/T-7 [cattle, heart, Peptide Mitochondrial Partial, 33 aa] Length = 33 Score = 70.9 bits (172), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 31/33 (93%), Positives = 33/33 (100%) Query: 112 RVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR 144 +VYDQMPEPRYV+SMGSCANGGGYYHYSYSVVR Sbjct: 1 KVYDQMPEPRYVVSMGSCANGGGYYHYSYSVVR 33 >gi|148259651|ref|YP_001233778.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Acidiphilium cryptum JF-5] gi|146401332|gb|ABQ29859.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Acidiphilium cryptum JF-5] Length = 164 Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 33/109 (30%), Positives = 57/109 (52%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E+ R + G A R +D+++V G T +A A+R+ M PR+V+ Sbjct: 39 CEIEIAACRRLRGGMAAHGIAMVEDLRAADILLVTGVATRNLAEAVRKSLAGMAPPRFVV 98 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLL 173 + G CA GG + +V+ G ++PVD+ + GCPP ++ G++ L Sbjct: 99 AAGDCALDGGVFKGVPAVLGGVQAVIPVDLLIAGCPPAPRQILAGLVAL 147 >gi|326403379|ref|YP_004283460.1| putative NADH ubiquinone oxidoreductase [Acidiphilium multivorum AIU301] gi|325050240|dbj|BAJ80578.1| putative NADH ubiquinone oxidoreductase [Acidiphilium multivorum AIU301] Length = 164 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 33/109 (30%), Positives = 57/109 (52%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E+ R + G A R +D+++V G T +A A+R+ M PR+V+ Sbjct: 39 CEIEIAACRRLRGGMAAQGIAMVEDLRAADILLVTGVATRNLAEAVRKSLAGMAPPRFVV 98 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLL 173 + G CA GG + +V+ G ++PVD+ + GCPP ++ G++ L Sbjct: 99 AAGDCALDGGVFKGVPAVLGGVQAVIPVDLLIAGCPPAPRQILAGLVAL 147 >gi|240102115|ref|YP_002958423.1| formate hydrogenlyase II subunit H (Mhy2H) [Thermococcus gammatolerans EJ3] gi|239909668|gb|ACS32559.1| formate hydrogenlyase II subunit H (Mhy2H) [Thermococcus gammatolerans EJ3] Length = 283 Score = 68.6 bits (166), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 42/135 (31%), Positives = 62/135 (45%), Gaps = 28/135 (20%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMP-EPRYV 123 C +E+ P YD ER G ASPR + M G LT + A + MP +PR + Sbjct: 19 CEIELFDILTPYYDAERLGVRLAASPRHAHAMAATGPLTRQAYYAAKEAIKAMPPKPRII 78 Query: 124 ISMGSCANGGGYYHYSYSVVR---------------GCDRIV-----------PVDIYVP 157 +++G+CA GG ++ Y + R G +V PV +Y+P Sbjct: 79 VAIGTCACSGGIFYNGYPIYRRPESGREGQEYPRRGGIFELVQDLRDEGEYVGPV-VYIP 137 Query: 158 GCPPTAEALIYGILL 172 GCPP E ++YG+ L Sbjct: 138 GCPPRPEEILYGVAL 152 >gi|213026204|ref|ZP_03340651.1| hydrogenase activity [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 58 Score = 67.0 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 28/53 (52%), Positives = 36/53 (67%) Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILL 172 P+ IS G+C N GG +H Y V G D+IVPVD+Y+PGCPPT A +YG + Sbjct: 5 PKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAM 57 >gi|291515582|emb|CBK64792.1| Ni,Fe-hydrogenase III small subunit [Alistipes shahii WAL 8301] Length = 254 Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 42/120 (35%), Positives = 64/120 (53%), Gaps = 1/120 (0%) Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 G A +E+ +DL RFG ASPR +D ++V+G +T MA AL YD + EP Sbjct: 135 GDASVEMELGATGNVNFDLGRFGIGFTASPRHADGVVVSGPVTVNMAEALEICYDAVAEP 194 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL-LLQKKIRR 179 + +++ GS A GG + S +V R D+++PG P I G++ LL +K R+ Sbjct: 195 KILVACGSEACSGGLFADSRAVDRTFFDTHTPDLWLPGAPTHPMTYIDGMMNLLGRKTRQ 254 >gi|149193854|ref|ZP_01870952.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Caminibacter mediatlanticus TB-2] gi|149135807|gb|EDM24285.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Caminibacter mediatlanticus TB-2] Length = 140 Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 35/119 (29%), Positives = 62/119 (52%), Gaps = 1/119 (0%) Query: 65 CAVEMMQASMP-RYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYV 123 C VE+ + M R+DL++ G + +D+ ++ G +T + L+ V +P V Sbjct: 20 CDVEIAASVMSSRFDLQKLGCEYIETSEDADIFMITGPVTARSLPFLKEVIKNHKKPYVV 79 Query: 124 ISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182 IS+G+C+ G + SY ++ D V VD+ V GCPP +A++ G+ ++R N Sbjct: 80 ISLGTCSVTCGIFRDSYPILGPVDSYVNVDVNVAGCPPRPQAILEGVKTAIDILKRKNN 138 >gi|48477897|ref|YP_023603.1| formate hydrogenlyase subunit 7 [Picrophilus torridus DSM 9790] gi|48430545|gb|AAT43410.1| formate hydrogenlyase subunit 7 [Picrophilus torridus DSM 9790] Length = 202 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 31/106 (29%), Positives = 51/106 (48%), Gaps = 8/106 (7%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C E+ S+P YDL R+ +PR +D +I++G M + MP+P Y+I Sbjct: 100 CNSELFSISIPEYDLTRYHIFFTNTPRHADAIILSGIYNESMKDVIDNALGAMPKPGYLI 159 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGI 170 +G+CA GG + G + + +PGCPP ++ G+ Sbjct: 160 LLGACALSGG--------IIGSGHEIKAVLEIPGCPPNPYTILKGL 197 >gi|124515569|gb|EAY57079.1| putative hydrogenase-3 (HycG) [Leptospirillum rubarum] gi|206601799|gb|EDZ38282.1| Putative NADH ubiquinone oxidoreductase, 20 kDa subunit [Leptospirillum sp. Group II '5-way CG'] Length = 169 Score = 65.1 bits (157), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 35/111 (31%), Positives = 59/111 (53%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E+ + Y ER G ASPR +D+++V G ++ +M L ++ M P+ V+ Sbjct: 49 CELELHAMNGSYYAPERDGIRFVASPRHADLLLVTGPVSCQMEQPLLDTHEAMASPKTVL 108 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175 ++G CA GG + S +V G D + P VPGCPP+ ++ + L + Sbjct: 109 AVGDCACQGGVFRGSPAVRNGVDGLFPEARKVPGCPPSPSDILRALRGLSR 159 >gi|313157372|gb|EFR56795.1| NADH ubiquinone oxidoreductase, 20 Kd subunit [Alistipes sp. HGB5] Length = 254 Score = 65.1 bits (157), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 43/119 (36%), Positives = 61/119 (51%), Gaps = 1/119 (0%) Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 G A +E+ +DL R+G ASPR +D ++V+G +T MA ALR D + P Sbjct: 135 GDASVEMELNATGNVNFDLGRYGIGFTASPRHADGVVVSGPITVNMAEALRICCDAVANP 194 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL-LLQKKIR 178 + ++ GS A GG + S +V R D+++PG P I GIL LL KK R Sbjct: 195 KILVVCGSEACSGGLFAGSRAVDRTFFDTHAADLWLPGAPTHPMTFIDGILNLLGKKKR 253 >gi|114329051|ref|YP_746208.1| formate hydrogenlyase subunit 7 [Granulibacter bethesdensis CGDNIH1] gi|114317225|gb|ABI63285.1| formate hydrogenlyase subunit 7 [Granulibacter bethesdensis CGDNIH1] Length = 174 Score = 65.1 bits (157), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 32/110 (29%), Positives = 57/110 (51%), Gaps = 1/110 (0%) Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 G + C +E+ L R G SP +D++++ G + + SA+ + ++ MP P Sbjct: 55 GGSACLLELEALRAAPGLLARHGLRFVTSPLHADILLITGDGCHNLTSAIHQAWEAMPGP 114 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGI 170 R+ I++G A G G SY+ + I P D+ +PG PP A+ ++ G+ Sbjct: 115 RWAIAVGDGAAGDGLLRGSYASTGNMEEI-PFDLVIPGSPPAADTILSGL 163 >gi|308375059|ref|ZP_07667937.1| oxidoreductase [Mycobacterium tuberculosis SUMu007] gi|308347618|gb|EFP36469.1| oxidoreductase [Mycobacterium tuberculosis SUMu007] Length = 143 Score = 63.9 bits (154), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 31/66 (46%), Positives = 40/66 (60%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C VE+ A P YD ERFG ASPR +D ++V G +T+ MA LR+ + P PR VI Sbjct: 36 CEVEISGAFGPVYDAERFGARLVASPRHADALLVTGVVTHNMAGPLRKTLEATPRPRVVI 95 Query: 125 SMGSCA 130 + G CA Sbjct: 96 ACGDCA 101 >gi|268679821|ref|YP_003304252.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Sulfurospirillum deleyianum DSM 6946] gi|268617852|gb|ACZ12217.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Sulfurospirillum deleyianum DSM 6946] Length = 138 Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 28/107 (26%), Positives = 57/107 (53%), Gaps = 1/107 (0%) Query: 65 CAVEMMQASM-PRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYV 123 C VE++ + + P++ + G P +++++V G +T + L+ Q+P + V Sbjct: 18 CDVEILASVLLPKFGFDALGCVYTNDPTLANILLVTGAITARSTPYLQAALKQLPSKKIV 77 Query: 124 ISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGI 170 +++G C GG + SY++ D V VD+ + GCPP+ + + G+ Sbjct: 78 VALGICPISGGVFRDSYAITGPLDTFVDVDVNISGCPPSPKEIAQGL 124 >gi|213863448|ref|ZP_03386703.1| hydrogenase activity [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 72 Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 28/71 (39%), Positives = 39/71 (54%) Query: 77 YDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY 136 +D ERFG SPR +D+++ G +T M S R + P+P+ IS G+C N GG + Sbjct: 2 FDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIF 61 Query: 137 HYSYSVVRGCD 147 H Y V G D Sbjct: 62 HDLYCVWGGTD 72 >gi|58038760|ref|YP_190724.1| hypothetical protein GOX0285 [Gluconobacter oxydans 621H] gi|58001174|gb|AAW60068.1| Hypothetical protein GOX0285 [Gluconobacter oxydans 621H] Length = 161 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 31/111 (27%), Positives = 60/111 (54%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E+ + + LE+ GF + P +D +++ G +T A + RV+ MP R +I Sbjct: 50 CFMEIESLNGSAFALEQAGFVCVSDPADADWLLLTGAVTRVCAEMVDRVWRAMPPGRSLI 109 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175 ++G+CA GG + Y+ + G + + PV + GCPP+ + ++ + L + Sbjct: 110 AVGACAVDGGPFPAGYATLGGLEALTPVRRSIAGCPPSPDDILRALQELAQ 160 >gi|117927935|ref|YP_872486.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Acidothermus cellulolyticus 11B] gi|117648398|gb|ABK52500.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Acidothermus cellulolyticus 11B] Length = 269 Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 38/113 (33%), Positives = 53/113 (46%), Gaps = 18/113 (15%) Query: 68 EMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMG 127 E++ P YD+ R G ASPR +DV++V G + MA+ L R P P VI+ G Sbjct: 141 EVLALLNPVYDIHRLGIFFTASPRHADVLLVTGVGSRGMAAPLARTLQAAPRPLVVIAAG 200 Query: 128 SCANGGGYYHYSYSVVRGCDRIVP------------------VDIYVPGCPPT 162 + A GG H +Y+ G ++ VDI+VPG PPT Sbjct: 201 TDAISGGLVHPTYATSGGIGDLIAATPDSAGATGAADGDPVRVDIWVPGSPPT 253 >gi|313836232|gb|EFS73946.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes HL037PA2] gi|314927669|gb|EFS91500.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes HL044PA1] gi|314971332|gb|EFT15430.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes HL037PA3] gi|328906272|gb|EGG26047.1| NADH ubiquinone oxidoreductase, 20 Kd subunit [Propionibacterium sp. P08] Length = 132 Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 42/125 (33%), Positives = 64/125 (51%), Gaps = 8/125 (6%) Query: 45 QLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTN 104 + + W GS+ + LACC VE + ++P R A+ V+ V+GT+T Sbjct: 2 KFIDWFADGSVYVVDLALACCGVE-SEVAVPATAAVREEIPDGAAI----VVFVSGTVTT 56 Query: 105 KMASALRRVYDQMP--EPRYVISMGSCANGGGYYHYSYSVVRGC-DRIVPVDIYVPGCPP 161 +ASA+R D++ P V++ G+CA GG Y S V G D + D ++PGCPP Sbjct: 57 GLASAVRVTVDELKRNHPVDVVAFGACACAGGPYWDSAGVAAGLPDAGLDADHWIPGCPP 116 Query: 162 TAEAL 166 +AL Sbjct: 117 GPDAL 121 >gi|148828675|gb|ABR13960.1| NDH-K [Thuja plicata] Length = 103 Score = 61.6 bits (148), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 26/75 (34%), Positives = 43/75 (57%) Query: 27 SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP 86 S + + T + T+++ L WAR SL + +G +CC +E R+D +R+G P Sbjct: 29 SSLLHQATPNSVISTTLNDLSNWARLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVP 88 Query: 87 RASPRQSDVMIVAGT 101 R+SPRQ+D++I T Sbjct: 89 RSSPRQADLLITPPT 103 >gi|323177391|gb|EFZ62979.1| hydrogenase-4 component I [Escherichia coli 1180] Length = 170 Score = 61.2 bits (147), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 26/75 (34%), Positives = 41/75 (54%) Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 G C +E+ A P +D ERFG +SPR +D+++ G +T M R Y+ P+ Sbjct: 40 GCNACEIEIFAAITPVFDAERFGIKVISSPRHADILLFTGAVTRAMRMPALRAYESAPDH 99 Query: 121 RYVISMGSCANGGGY 135 + +S G+C GGG+ Sbjct: 100 KICVSYGACGAGGGF 114 >gi|300820847|ref|ZP_07100997.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 119-7] gi|331669229|ref|ZP_08370077.1| hydrogenase-4 component I [Escherichia coli TA271] gi|331678474|ref|ZP_08379149.1| hydrogenase-4 component I [Escherichia coli H591] gi|300526600|gb|EFK47669.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 119-7] gi|331064423|gb|EGI36334.1| hydrogenase-4 component I [Escherichia coli TA271] gi|331074934|gb|EGI46254.1| hydrogenase-4 component I [Escherichia coli H591] Length = 173 Score = 61.2 bits (147), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 26/75 (34%), Positives = 41/75 (54%) Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 G C +E+ A P +D ERFG +SPR +D+++ G +T M R Y+ P+ Sbjct: 43 GCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMRMPALRAYESAPDH 102 Query: 121 RYVISMGSCANGGGY 135 + +S G+C GGG+ Sbjct: 103 KICVSYGACGAGGGF 117 >gi|256017364|ref|ZP_05431229.1| hydrogenase 4, Fe-S subunit [Shigella sp. D9] gi|323156092|gb|EFZ42251.1| hydrogenase-4 component I [Escherichia coli EPECa14] gi|323944709|gb|EGB40776.1| NADH ubiquinone oxidoreductase [Escherichia coli H120] Length = 173 Score = 60.8 bits (146), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 26/75 (34%), Positives = 41/75 (54%) Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 G C +E+ A P +D ERFG +SPR +D+++ G +T M R Y+ P+ Sbjct: 43 GCNACEIEIFAAITPVFDAERFGIKVISSPRHADILLFTGAVTRAMRMPALRAYESAPDH 102 Query: 121 RYVISMGSCANGGGY 135 + +S G+C GGG+ Sbjct: 103 KICVSYGACGAGGGF 117 >gi|307312517|ref|ZP_07592150.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Escherichia coli W] gi|306907440|gb|EFN37944.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Escherichia coli W] gi|323184454|gb|EFZ69829.1| hydrogenase-4 component I [Escherichia coli 1357] Length = 173 Score = 60.8 bits (146), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 26/75 (34%), Positives = 41/75 (54%) Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 G C +E+ A P +D ERFG +SPR +D+++ G +T M R Y+ P+ Sbjct: 43 GCNACEIEIFAAITPVFDAERFGIKVISSPRHADILLFTGAVTRAMRMPALRAYESAPDH 102 Query: 121 RYVISMGSCANGGGY 135 + +S G+C GGG+ Sbjct: 103 KICVSYGACGAGGGF 117 >gi|297725319|ref|NP_001175023.1| Os07g0116900 [Oryza sativa Japonica Group] gi|255677459|dbj|BAH93751.1| Os07g0116900 [Oryza sativa Japonica Group] Length = 114 Score = 60.8 bits (146), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 31/49 (63%), Positives = 33/49 (67%) Query: 62 LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASAL 110 LA CAVEMM A YD +RF R SPRQSD MI+ GTLTNKM AL Sbjct: 58 LAYCAVEMMHAGASCYDFDRFRVIFRPSPRQSDCMIIVGTLTNKMGPAL 106 >gi|125557036|gb|EAZ02572.1| hypothetical protein OsI_24684 [Oryza sativa Indica Group] gi|125598924|gb|EAZ38500.1| hypothetical protein OsJ_22886 [Oryza sativa Japonica Group] Length = 135 Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 31/49 (63%), Positives = 33/49 (67%) Query: 62 LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASAL 110 LA CAVEMM A YD +RF R SPRQSD MI+ GTLTNKM AL Sbjct: 58 LAYCAVEMMHAGASCYDFDRFRVIFRPSPRQSDCMIIVGTLTNKMGPAL 106 >gi|300951811|ref|ZP_07165624.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 116-1] gi|300448958|gb|EFK12578.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 116-1] Length = 116 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 26/74 (35%), Positives = 40/74 (54%) Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 G C +E+ A P +D ERFG +SPR +D+++ G +T M R Y+ P+ Sbjct: 43 GCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMRMPALRAYESAPDH 102 Query: 121 RYVISMGSCANGGG 134 + +S G+C GGG Sbjct: 103 KICVSYGACGVGGG 116 >gi|314924059|gb|EFS87890.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes HL001PA1] gi|314965030|gb|EFT09129.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes HL082PA2] gi|314983106|gb|EFT27198.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes HL110PA3] gi|315090649|gb|EFT62625.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes HL110PA4] gi|315093837|gb|EFT65813.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes HL060PA1] gi|315104055|gb|EFT76031.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes HL050PA2] gi|327326472|gb|EGE68261.1| NADH dehydrogenase subunit [Propionibacterium acnes HL103PA1] Length = 132 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 45/139 (32%), Positives = 69/139 (49%), Gaps = 17/139 (12%) Query: 45 QLVTWARTGSLMWMTFGLACCAVE---MMQASMP-RYDLERFGFAPRASPRQSDVMIVAG 100 + + W GS+ + LACC VE + A+ P R ++ P +P V+ V+G Sbjct: 2 KFIDWFADGSVYVVDLALACCGVESGAAVSANAPVREEI------PDGAPI---VVFVSG 52 Query: 101 TLTNKMASALRRVYDQMP--EPRYVISMGSCANGGGYYHYSYSVVRGC-DRIVPVDIYVP 157 T+T +A +R ++ P V++ G+CA GG Y S VV G D V D ++P Sbjct: 53 TVTTGLAPVVRDTVGELKRNHPVDVVAFGACACAGGPYWDSAGVVAGLPDAGVDADHWIP 112 Query: 158 GCPPTAEALIYGILLLQKK 176 GCPP E L G+L ++ Sbjct: 113 GCPPGPETLT-GLLASSRE 130 >gi|50843355|ref|YP_056582.1| NADH dehydrogenase subunit [Propionibacterium acnes KPA171202] gi|289424815|ref|ZP_06426597.1| NADH ubiquinone oxidoreductase, 20 Kd subunit [Propionibacterium acnes SK187] gi|289427723|ref|ZP_06429435.1| NADH ubiquinone oxidoreductase, 20 Kd subunit [Propionibacterium acnes J165] gi|295131426|ref|YP_003582089.1| NADH ubiquinone oxidoreductase, 20 Kd subunit [Propionibacterium acnes SK137] gi|50840957|gb|AAT83624.1| NADH dehydrogenase subunit [Propionibacterium acnes KPA171202] gi|289154778|gb|EFD03461.1| NADH ubiquinone oxidoreductase, 20 Kd subunit [Propionibacterium acnes SK187] gi|289159214|gb|EFD07406.1| NADH ubiquinone oxidoreductase, 20 Kd subunit [Propionibacterium acnes J165] gi|291376669|gb|ADE00524.1| NADH ubiquinone oxidoreductase, 20 Kd subunit [Propionibacterium acnes SK137] gi|313763090|gb|EFS34454.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes HL013PA1] gi|313773016|gb|EFS38982.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes HL074PA1] gi|313794097|gb|EFS42119.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes HL110PA1] gi|313802411|gb|EFS43636.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes HL110PA2] gi|313807856|gb|EFS46340.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes HL087PA2] gi|313812031|gb|EFS49745.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes HL083PA1] gi|313812142|gb|EFS49856.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes HL025PA1] gi|313816888|gb|EFS54602.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes HL059PA1] gi|313819192|gb|EFS56906.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes HL046PA2] gi|313819769|gb|EFS57483.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes HL036PA1] gi|313823886|gb|EFS61600.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes HL036PA2] gi|313827247|gb|EFS64961.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes HL063PA1] gi|313828423|gb|EFS66137.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes HL063PA2] gi|313831120|gb|EFS68834.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes HL007PA1] gi|313833477|gb|EFS71191.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes HL056PA1] gi|313838111|gb|EFS75825.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes HL086PA1] gi|314914551|gb|EFS78382.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes HL005PA4] gi|314919205|gb|EFS83036.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes HL050PA1] gi|314920639|gb|EFS84470.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes HL050PA3] gi|314925722|gb|EFS89553.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes HL036PA3] gi|314931451|gb|EFS95282.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes HL067PA1] gi|314957011|gb|EFT01117.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes HL027PA1] gi|314957825|gb|EFT01928.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes HL002PA1] gi|314960666|gb|EFT04767.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes HL002PA2] gi|314963378|gb|EFT07478.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes HL082PA1] gi|314969727|gb|EFT13825.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes HL037PA1] gi|314974302|gb|EFT18398.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes HL053PA1] gi|314976926|gb|EFT21021.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes HL045PA1] gi|314979886|gb|EFT23980.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes HL072PA2] gi|314985816|gb|EFT29908.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes HL005PA1] gi|314988401|gb|EFT32492.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes HL005PA2] gi|314988825|gb|EFT32916.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes HL005PA3] gi|315077114|gb|EFT49189.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes HL053PA2] gi|315084887|gb|EFT56863.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes HL027PA2] gi|315087244|gb|EFT59220.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes HL002PA3] gi|315088977|gb|EFT60953.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes HL072PA1] gi|315096825|gb|EFT68801.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes HL038PA1] gi|315100090|gb|EFT72066.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes HL059PA2] gi|315100586|gb|EFT72562.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes HL046PA1] gi|315106026|gb|EFT78002.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes HL030PA1] gi|315109357|gb|EFT81333.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes HL030PA2] gi|327325634|gb|EGE67432.1| NADH dehydrogenase subunit [Propionibacterium acnes HL096PA2] gi|327328228|gb|EGE69995.1| NADH dehydrogenase subunit [Propionibacterium acnes HL096PA3] gi|327445304|gb|EGE91958.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes HL043PA1] gi|327446944|gb|EGE93598.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes HL043PA2] gi|327449059|gb|EGE95713.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes HL013PA2] gi|327451405|gb|EGE98059.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes HL092PA1] gi|327452595|gb|EGE99249.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes HL087PA3] gi|327457638|gb|EGF04293.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes HL083PA2] gi|328751922|gb|EGF65538.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes HL087PA1] gi|328756933|gb|EGF70549.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes HL020PA1] gi|328759054|gb|EGF72670.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes HL025PA2] gi|328762245|gb|EGF75737.1| NADH dehydrogenase subunit [Propionibacterium acnes HL099PA1] gi|332676294|gb|AEE73110.1| NADH dehydrogenase subunit [Propionibacterium acnes 266] Length = 132 Score = 58.9 bits (141), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 40/125 (32%), Positives = 60/125 (48%), Gaps = 8/125 (6%) Query: 45 QLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTN 104 + + W GS+ + LACC VE A + + P +P V++V+GT+T Sbjct: 2 KFIDWFADGSVYVVDLALACCGVESGAAVLANAPVREE--IPDGAPI---VVLVSGTVTT 56 Query: 105 KMASALRRVYDQMP--EPRYVISMGSCANGGGYYHYSYSVVRGC-DRIVPVDIYVPGCPP 161 +A + ++ P V++ G+CA GG Y S VV G D V D ++PGCPP Sbjct: 57 GLAPVVSDTVHELKRNHPVDVVAFGACACAGGPYWDSAGVVAGLPDAGVDADHWIPGCPP 116 Query: 162 TAEAL 166 E L Sbjct: 117 GPETL 121 >gi|282855245|ref|ZP_06264577.1| NADH ubiquinone oxidoreductase, 20 Kd subunit [Propionibacterium acnes J139] gi|282581833|gb|EFB87218.1| NADH ubiquinone oxidoreductase, 20 Kd subunit [Propionibacterium acnes J139] Length = 132 Score = 58.5 bits (140), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 45/139 (32%), Positives = 69/139 (49%), Gaps = 17/139 (12%) Query: 45 QLVTWARTGSLMWMTFGLACCAVE---MMQASMP-RYDLERFGFAPRASPRQSDVMIVAG 100 + + W GS+ + LACC VE + A+ P R ++ P +P V+ V+G Sbjct: 2 KFIDWFADGSVYVVDLALACCGVESGAAVSANAPVREEI------PDGAPI---VVFVSG 52 Query: 101 TLTNKMASALRRVYDQMP--EPRYVISMGSCANGGGYYHYSYSVVRGC-DRIVPVDIYVP 157 T+T +A +R ++ P V++ G+CA GG Y S VV G D V D ++P Sbjct: 53 TVTTGLAPVVRDTVGELKRNHPVDVMAFGACACAGGPYWDSAGVVAGLPDAGVDADHWIP 112 Query: 158 GCPPTAEALIYGILLLQKK 176 GCPP E L G+L ++ Sbjct: 113 GCPPGPETLT-GLLASSRE 130 >gi|327333152|gb|EGE74879.1| NADH dehydrogenase subunit [Propionibacterium acnes HL097PA1] Length = 132 Score = 57.8 bits (138), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 44/139 (31%), Positives = 69/139 (49%), Gaps = 17/139 (12%) Query: 45 QLVTWARTGSLMWMTFGLACCAVE---MMQASMP-RYDLERFGFAPRASPRQSDVMIVAG 100 + + W GS+ + LACC VE + A+ P R ++ P +P V++V+G Sbjct: 2 KFIDWFADGSVYVVDLALACCGVESGAAVSANAPVREEI------PDGAPI---VVLVSG 52 Query: 101 TLTNKMASALRRVYDQMP--EPRYVISMGSCANGGGYYHYSYSVVRGC-DRIVPVDIYVP 157 T+T +A + ++ P V++ G+CA GG Y S VV G D V D ++P Sbjct: 53 TVTTGLAPVVSDTVHELKRNHPVDVVAFGACACAGGPYWDSAGVVAGLPDAGVDADHWIP 112 Query: 158 GCPPTAEALIYGILLLQKK 176 GCPP E L G+L ++ Sbjct: 113 GCPPGPETLT-GLLASSRE 130 >gi|301107928|ref|XP_002903046.1| conserved hypothetical protein [Phytophthora infestans T30-4] gi|262098164|gb|EEY56216.1| conserved hypothetical protein [Phytophthora infestans T30-4] Length = 62 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 27/50 (54%), Positives = 35/50 (70%), Gaps = 3/50 (6%) Query: 106 MASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155 MA +R V+D MP+ V+ MGSCA+GGGYYHYSY+ V G +R V + Y Sbjct: 1 MALGMRSVHDLMPD---VVFMGSCADGGGYYHYSYAEVYGYNRFVLLGFY 47 >gi|224538212|ref|ZP_03678751.1| hypothetical protein BACCELL_03103 [Bacteroides cellulosilyticus DSM 14838] gi|224520144|gb|EEF89249.1| hypothetical protein BACCELL_03103 [Bacteroides cellulosilyticus DSM 14838] Length = 91 Score = 54.3 bits (129), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 23/50 (46%), Positives = 30/50 (60%), Gaps = 1/50 (2%) Query: 43 VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPR 91 +D + W R+ SL +TF +CC +E M RYD+ RFGF RASPR Sbjct: 42 LDDFINWGRSNSLWPLTFATSCCGIEFMALGAARYDMARFGFEVARASPR 91 >gi|183221787|ref|YP_001839783.1| hydrogenase-4 subunit G [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189911861|ref|YP_001963416.1| metal (Ni/Fe) hydrogenase small subunit [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167776537|gb|ABZ94838.1| Metal (Ni/Fe) hydrogenase, small subunit [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167780209|gb|ABZ98507.1| Hydrogenase-4 subunit G [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 273 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 30/97 (30%), Positives = 52/97 (53%), Gaps = 7/97 (7%) Query: 77 YDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY 136 +D ER G ASP+ +D ++ +G ++ +M L+ +D + EPR +I+ G+ A GG + Sbjct: 164 FDSEREGIRCVASPKHADTIVFSGPISEQMEGPLQTAWDVLSEPRALIACGTEAVSGGLF 223 Query: 137 HYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLL 173 +G P D+Y+ G PP + ++ G LL Sbjct: 224 ------PKGKIPKEP-DLYISGDPPRPDVILQGFRLL 253 >gi|300951809|ref|ZP_07165623.1| conserved domain protein [Escherichia coli MS 116-1] gi|300448972|gb|EFK12592.1| conserved domain protein [Escherichia coli MS 116-1] Length = 136 Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 25/49 (51%), Positives = 32/49 (65%), Gaps = 4/49 (8%) Query: 136 YHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKKIRRV 180 +H YSV G D IVP+D+++PGCPPT A I+G LLQ+KI V Sbjct: 2 FHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHGFAVALGLLQQKIHAV 50 >gi|332278363|ref|ZP_08390776.1| LOW QUALITY PROTEIN: hydrogenase 4 Fe-S subunit [Shigella sp. D9] gi|332100715|gb|EGJ04061.1| LOW QUALITY PROTEIN: hydrogenase 4 Fe-S subunit [Shigella sp. D9] Length = 149 Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 25/49 (51%), Positives = 32/49 (65%), Gaps = 4/49 (8%) Query: 136 YHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKKIRRV 180 +H YSV G D IVP+D+++PGCPPT A I+G LLQ+KI V Sbjct: 15 FHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHGFAVALGLLQQKIHAV 63 >gi|19698434|gb|AAL93145.1| NADH-ubiquinone oxidoreductase [Lupinus luteus] Length = 92 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 22/33 (66%), Positives = 27/33 (81%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMM 70 F+++ VD L+ WAR GS+ MTFGLACCAVEMM Sbjct: 60 FVISKVDDLMNWARRGSIWPMTFGLACCAVEMM 92 >gi|323159342|gb|EFZ45327.1| hydrogenase-4 component I [Escherichia coli E128010] Length = 142 Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 25/49 (51%), Positives = 32/49 (65%), Gaps = 4/49 (8%) Query: 136 YHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKKIRRV 180 +H YSV G D IVP+D+++PGCPPT A I+G LLQ+KI V Sbjct: 8 FHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHGFAVALGLLQQKIHAV 56 >gi|300820846|ref|ZP_07100996.1| conserved domain protein [Escherichia coli MS 119-7] gi|300526599|gb|EFK47668.1| conserved domain protein [Escherichia coli MS 119-7] Length = 142 Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 25/49 (51%), Positives = 32/49 (65%), Gaps = 4/49 (8%) Query: 136 YHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKKIRRV 180 +H YSV G D IVP+D+++PGCPPT A I+G LLQ+KI V Sbjct: 8 FHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHGFAVALGLLQQKIHAV 56 >gi|19698436|gb|AAL93146.1| NADH-ubiquinone oxidoreductase [Lupinus luteus] Length = 94 Score = 51.2 bits (121), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 22/33 (66%), Positives = 27/33 (81%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMM 70 F+++ VD L+ WAR GS+ MTFGLACCAVEMM Sbjct: 62 FVISKVDDLMNWARRGSIWPMTFGLACCAVEMM 94 >gi|303254845|ref|ZP_07340933.1| formate hydrogenlyase, subunit G [Streptococcus pneumoniae BS455] gi|302598192|gb|EFL65250.1| formate hydrogenlyase, subunit G [Streptococcus pneumoniae BS455] Length = 106 Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 32/61 (52%) Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 G C +E+ P +D ERFG ASPR +D+++ G +T M + R Y P+P Sbjct: 46 GCNGCEIEIFSTITPTFDAERFGIKVVASPRHADILLFTGAVTRAMRTPAMRAYQAAPDP 105 Query: 121 R 121 + Sbjct: 106 K 106 >gi|207094125|ref|ZP_03241912.1| NADH dehydrogenase subunit B [Helicobacter pylori HPKX_438_AG0C1] Length = 35 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 20/35 (57%), Positives = 28/35 (80%) Query: 140 YSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQ 174 Y+ V+G DR+VPVDIY+PGC P +E L Y +++LQ Sbjct: 1 YATVQGADRVVPVDIYLPGCAPRSETLQYALMVLQ 35 >gi|333001061|gb|EGK20631.1| formate hydrogenlyase subunit 7 [Shigella flexneri K-272] Length = 128 Score = 48.5 bits (114), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 22/41 (53%), Positives = 28/41 (68%), Gaps = 4/41 (9%) Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKKIRRVG 181 G D+IVPVD+Y+PGCPPT A +YG LL++KI G Sbjct: 4 GTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARG 44 >gi|303245121|ref|ZP_07331437.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanothermococcus okinawensis IH1] gi|302484504|gb|EFL47452.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanothermococcus okinawensis IH1] Length = 160 Score = 48.1 bits (113), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 23/95 (24%), Positives = 47/95 (49%), Gaps = 9/95 (9%) Query: 87 RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS------- 139 R P D+ +V G + +++ + + + + V+++G+CA GG YS Sbjct: 59 RKIPDNIDIALVEGAVCLDDEHSIKDILETRKKAKIVVALGACAATGGVLRYSRGGQMSK 118 Query: 140 --YSVVRGCDRIVPVDIYVPGCPPTAEALIYGILL 172 ++ ++ VD+ +PGCPP+ E ++ I+L Sbjct: 119 PAHASYVAVGDVIKVDLAIPGCPPSPETIVKVIIL 153 >gi|84490092|ref|YP_448324.1| FrhG [Methanosphaera stadtmanae DSM 3091] gi|84373411|gb|ABC57681.1| FrhG [Methanosphaera stadtmanae DSM 3091] Length = 256 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/90 (27%), Positives = 50/90 (55%), Gaps = 10/90 (11%) Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS---------YSV 142 + D++++ G++ + +L+ + + + + ++++GSCA GG+ Y+ +S Sbjct: 76 EMDLVLIEGSVCLEDKHSLKELKEARSKSKLLVALGSCAATGGFTVYAKGGQQAQPQHSS 135 Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILL 172 IV VD+ VPGCPP+ + +I ILL Sbjct: 136 FLALQNIVKVDLAVPGCPPSPD-IIKKILL 164 >gi|332295900|ref|YP_004437823.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Thermodesulfobium narugense DSM 14796] gi|332179003|gb|AEE14692.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Thermodesulfobium narugense DSM 14796] Length = 155 Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/82 (29%), Positives = 39/82 (47%) Query: 64 CCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYV 123 E+ P+Y+L R G +PR++D++IV G T KM + +QMPEP V Sbjct: 49 ALNFEIFALLSPKYNLHRLGIFFTQTPREADLLIVLGRPTEKMVPLMLEAINQMPEPFGV 108 Query: 124 ISMGSCANGGGYYHYSYSVVRG 145 + + G + ++ V G Sbjct: 109 LLTENNDLGLSFDNFDIPNVIG 130 >gi|73669778|ref|YP_305793.1| coenzyme F420-reducing hydrogenase subunit gamma [Methanosarcina barkeri str. Fusaro] gi|72396940|gb|AAZ71213.1| coenzyme F420-reducing hydrogenase, gamma subunit [Methanosarcina barkeri str. Fusaro] Length = 274 Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust. Identities = 26/96 (27%), Positives = 49/96 (51%), Gaps = 13/96 (13%) Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCAN---------GGGYYHYSYSV 142 + DV +V G++ + ++ + + + R V+++GSCA+ GG + H + Sbjct: 68 EMDVALVEGSVCIQDRESVEDIKETRKKSRIVVALGSCASYGNITRFCRGGQHNHPQHES 127 Query: 143 VRGCDRIVPVDIYVPGCPPTAEAL----IYGILLLQ 174 ++ VD+Y+PGCPP+ E + I LLL+ Sbjct: 128 YLPIGDLIDVDVYIPGCPPSPELIRNVAIMAYLLLE 163 >gi|2463276|emb|CAA74096.1| F420-reducing hydrogenase isoenzyme I gamma subunit [Methanosarcina barkeri] Length = 259 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 26/96 (27%), Positives = 49/96 (51%), Gaps = 13/96 (13%) Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCAN---------GGGYYHYSYSV 142 + DV +V G++ + ++ + + + R V+++GSCA+ GG + H + Sbjct: 53 EMDVALVEGSVCIQDRESVEDIKETRKKSRIVVALGSCASYGNITRFCRGGQHNHPQHES 112 Query: 143 VRGCDRIVPVDIYVPGCPPTAEAL----IYGILLLQ 174 ++ VD+Y+PGCPP+ E + I LLL+ Sbjct: 113 YLPIGDLIDVDVYIPGCPPSPELIRNVAIMAYLLLE 148 >gi|327399463|ref|YP_004340332.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Hippea maritima DSM 10411] gi|327182092|gb|AEA34273.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Hippea maritima DSM 10411] Length = 153 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 19/54 (35%), Positives = 32/54 (59%) Query: 67 VEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 +E+ P+Y++ RFG SPR +D+++V G + KM L+ +QMP+P Sbjct: 50 LEIAALQTPQYNIHRFGIFFCDSPRHADLLLVLGKCSIKMIEPLKETVNQMPQP 103 >gi|150398834|ref|YP_001322601.1| coenzyme F420 hydrogenase [Methanococcus vannielii SB] gi|150011537|gb|ABR53989.1| Coenzyme F420 hydrogenase [Methanococcus vannielii SB] Length = 242 Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust. Identities = 23/94 (24%), Positives = 45/94 (47%), Gaps = 9/94 (9%) Query: 87 RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-------- 138 R P D+ +V G++ +L + + V+++G+CA GG + Sbjct: 59 RKIPENIDIALVEGSVCLDDHHSLDDILTTRKNSKIVVALGACAASGGVTRFARGGQMSQ 118 Query: 139 -SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171 S+S ++ VD+ +PGCPP+ E+++ I+ Sbjct: 119 PSHSAFVPIGDVIKVDLALPGCPPSTESIVNLIM 152 >gi|330993943|ref|ZP_08317873.1| Formate hydrogenlyase subunit 7 [Gluconacetobacter sp. SXCC-1] gi|329758889|gb|EGG75403.1| Formate hydrogenlyase subunit 7 [Gluconacetobacter sp. SXCC-1] Length = 166 Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust. Identities = 28/85 (32%), Positives = 49/85 (57%), Gaps = 1/85 (1%) Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCD 147 ++PRQ+ ++++ G+L+ +MA + + MP R + +G CA GG + SY+V+ G Sbjct: 70 STPRQAGLLLLTGSLSVEMAPVVELAWQAMPGSRLLAVVGDCAVDGGVFTPSYAVLGGVG 129 Query: 148 RIVPVDIYVPGCPPTAEALIYGILL 172 + +PGCPP A A+I L+ Sbjct: 130 GRAQASLSLPGCPP-APAMILEALI 153 >gi|261403395|ref|YP_003247619.1| coenzyme F420 hydrogenase, subunit gamma [Methanocaldococcus vulcanius M7] gi|261370388|gb|ACX73137.1| coenzyme F420 hydrogenase, subunit gamma [Methanocaldococcus vulcanius M7] Length = 227 Score = 44.3 bits (103), Expect = 0.008, Method: Compositional matrix adjust. Identities = 22/85 (25%), Positives = 43/85 (50%), Gaps = 9/85 (10%) Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS---------YSV 142 + D+ +V G++ +L + + + V+++G+CA GG YS +S Sbjct: 49 ECDIALVEGSVCLDDHHSLEVAQEVRKKAKIVVALGACAATGGVTRYSKGNQLSKPVHSS 108 Query: 143 VRGCDRIVPVDIYVPGCPPTAEALI 167 ++ VD+ +PGCPP+ EA++ Sbjct: 109 FSPLTEVIKVDLAIPGCPPSPEAIV 133 >gi|45358381|ref|NP_987938.1| coenzyme F420-reducing hydrogenase subunit gamma [Methanococcus maripaludis S2] gi|44921139|emb|CAF30374.1| coenzyme F420-reducing hydrogenase subunit gamma [Methanococcus maripaludis S2] Length = 242 Score = 43.9 bits (102), Expect = 0.010, Method: Compositional matrix adjust. Identities = 22/94 (23%), Positives = 45/94 (47%), Gaps = 9/94 (9%) Query: 87 RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-------- 138 R P D+ +V G++ ++ + + V+++G+CA GG + Sbjct: 59 RKIPENIDIALVEGSVCLDDHHSVEDILTTRKNSKIVVALGACAASGGVTRFGRGGQMSQ 118 Query: 139 -SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171 S+S ++ VD+ +PGCPP+ E+++ I+ Sbjct: 119 PSHSSFVPIGDVIKVDLALPGCPPSTESIVNLIM 152 >gi|284990228|ref|YP_003408782.1| hypothetical protein Gobs_1697 [Geodermatophilus obscurus DSM 43160] gi|284063473|gb|ADB74411.1| hypothetical protein Gobs_1697 [Geodermatophilus obscurus DSM 43160] Length = 586 Score = 43.9 bits (102), Expect = 0.011, Method: Composition-based stats. Identities = 19/54 (35%), Positives = 36/54 (66%) Query: 78 DLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCAN 131 +L+R G+ ++P ++D+++V GT +A A+ V+ Q+PEPR+ +GS A+ Sbjct: 35 ELDRRGWGHASAPAETDLLLVLGTPGEDLARAIDVVWSQVPEPRHRSGVGSGAH 88 >gi|297619116|ref|YP_003707221.1| coenzyme F420 hydrogenase subunit gamma [Methanococcus voltae A3] gi|297378093|gb|ADI36248.1| coenzyme F420 hydrogenase, subunit gamma [Methanococcus voltae A3] Length = 242 Score = 43.5 bits (101), Expect = 0.012, Method: Compositional matrix adjust. Identities = 21/90 (23%), Positives = 43/90 (47%), Gaps = 9/90 (10%) Query: 87 RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-------- 138 R P D+ +V G++ A+ + + V+++G+CA GG + Sbjct: 59 RKIPENIDIALVEGSVCLDDHHAMDDILTTRKNSKIVVALGACAASGGVTRFARGGQMSQ 118 Query: 139 -SYSVVRGCDRIVPVDIYVPGCPPTAEALI 167 S++ ++ VD+ +PGCPP+ E+++ Sbjct: 119 PSHASFAPIGDVIKVDLALPGCPPSPESIV 148 >gi|29565659|ref|NP_817241.1| NADH dehydrogenase subunit K [Pinus koraiensis] gi|29469758|gb|AAO74086.1| ORF82a [Pinus koraiensis] Length = 82 Score = 42.7 bits (99), Expect = 0.020, Method: Compositional matrix adjust. Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 6/51 (11%) Query: 132 GGGYYHY------SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKK 176 G YYH SYS V D+++PVD+Y P CP E +I I L+++ Sbjct: 25 GSMYYHIEMFGTDSYSTVHEVDKLIPVDVYSPDCPTEPEVIIDAITKLRER 75 >gi|307352753|ref|YP_003893804.1| coenzyme F420 hydrogenase subunit gamma [Methanoplanus petrolearius DSM 11571] gi|307155986|gb|ADN35366.1| coenzyme F420 hydrogenase, subunit gamma [Methanoplanus petrolearius DSM 11571] Length = 314 Score = 42.7 bits (99), Expect = 0.022, Method: Compositional matrix adjust. Identities = 25/96 (26%), Positives = 47/96 (48%), Gaps = 13/96 (13%) Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCA---------NGGGYYHYSYSV 142 + DV +V G++ + ++R + + + + V+++G CA GG + + Sbjct: 110 EMDVALVEGSVCLQDECSVREIKETREKAKVVVALGGCAAYGNITRFCRGGQWNQPQHES 169 Query: 143 VRGCDRIVPVDIYVPGCPPTAEAL----IYGILLLQ 174 ++ VD+Y+P CPP AEA+ + LLLQ Sbjct: 170 FVPIGDLIDVDVYLPSCPPGAEAIRNVCVMAYLLLQ 205 >gi|256811180|ref|YP_003128549.1| coenzyme F420 hydrogenase, subunit gamma [Methanocaldococcus fervens AG86] gi|256794380|gb|ACV25049.1| coenzyme F420 hydrogenase, subunit gamma [Methanocaldococcus fervens AG86] Length = 227 Score = 42.7 bits (99), Expect = 0.023, Method: Compositional matrix adjust. Identities = 21/85 (24%), Positives = 42/85 (49%), Gaps = 9/85 (10%) Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS---------YSV 142 + D+ +V G++ +L + + + V+++G+CA GG Y +S Sbjct: 49 ECDIALVEGSVCLDDHHSLEVAEEVRKKAKIVVALGACAATGGVTRYCKGNQMSKPVHSS 108 Query: 143 VRGCDRIVPVDIYVPGCPPTAEALI 167 ++ VD+ +PGCPP+ EA++ Sbjct: 109 FSPLTEVIKVDLAIPGCPPSPEAIV 133 >gi|149377240|ref|ZP_01894987.1| NADH dehydrogenase subunit B [Marinobacter algicola DG893] gi|149358428|gb|EDM46903.1| NADH dehydrogenase subunit B [Marinobacter algicola DG893] Length = 81 Score = 42.7 bits (99), Expect = 0.023, Method: Compositional matrix adjust. Identities = 20/47 (42%), Positives = 25/47 (53%) Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFG 83 G L ++ V W R SL FGL+CC VEM A +D+ RFG Sbjct: 35 GKLSDVLNSAVNWGRKNSLWPYNFGLSCCYVEMTTAFTAPHDIARFG 81 >gi|15668201|ref|NP_246994.1| coenzyme F420-reducing hydrogenase subunit gamma [Methanocaldococcus jannaschii DSM 2661] gi|2494431|sp|Q60340|FRHG_METJA RecName: Full=Coenzyme F420 hydrogenase subunit gamma; AltName: Full=8-hydroxy-5-deazaflavin-reducing hydrogenase subunit gamma; Short=FRH gi|1590833|gb|AAB98010.1| coenzyme F420-reducing hydrogenase, gamma subunit [Methanocaldococcus jannaschii DSM 2661] Length = 230 Score = 42.4 bits (98), Expect = 0.028, Method: Compositional matrix adjust. Identities = 21/85 (24%), Positives = 42/85 (49%), Gaps = 9/85 (10%) Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS---------YSV 142 + D+ +V G++ +L + + + V+++G+CA GG Y +S Sbjct: 52 ECDIALVEGSVCLDDHHSLEVAQEVRKKAKIVVALGACAATGGVTRYCKGNQLSKPVHSS 111 Query: 143 VRGCDRIVPVDIYVPGCPPTAEALI 167 ++ VD+ +PGCPP+ EA++ Sbjct: 112 FSPLTEVIKVDLAIPGCPPSPEAIV 136 >gi|20089854|ref|NP_615929.1| coenzyme F420 hydrogenase, subunit gamma [Methanosarcina acetivorans C2A] gi|19914803|gb|AAM04409.1| coenzyme F420 hydrogenase, subunit gamma [Methanosarcina acetivorans C2A] Length = 262 Score = 42.4 bits (98), Expect = 0.029, Method: Compositional matrix adjust. Identities = 21/84 (25%), Positives = 42/84 (50%), Gaps = 9/84 (10%) Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCAN---------GGGYYHYSYSV 142 + DV +V G++ + ++ + + + R V+++GSCA GG + + Sbjct: 62 EMDVALVEGSVCIQDRESVEDIKETRKKSRIVVALGSCATYGNITRFCRGGQHNQPQHES 121 Query: 143 VRGCDRIVPVDIYVPGCPPTAEAL 166 ++ VD+Y+PGCPP+ E + Sbjct: 122 FLPIGDLIDVDVYIPGCPPSPELI 145 >gi|21229145|ref|NP_635067.1| coenzyme F420 hydrogenase subunit gamma [Methanosarcina mazei Go1] gi|20907707|gb|AAM32739.1| Coenzyme F420 hydrogenase, gamma subunit [Methanosarcina mazei Go1] Length = 287 Score = 42.4 bits (98), Expect = 0.030, Method: Compositional matrix adjust. Identities = 20/84 (23%), Positives = 42/84 (50%), Gaps = 9/84 (10%) Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCA---------NGGGYYHYSYSV 142 + DV +V G++ + ++ + + + + V+++GSCA GG + + Sbjct: 87 EMDVALVEGSVCIQDHESVEEIRETREKAKIVVALGSCACYGNITRFSRGGQHNQPQHES 146 Query: 143 VRGCDRIVPVDIYVPGCPPTAEAL 166 ++ VD+Y+PGCPP+ E + Sbjct: 147 FLPIGDLIDVDVYIPGCPPSPELI 170 >gi|289192424|ref|YP_003458365.1| coenzyme F420 hydrogenase, subunit gamma [Methanocaldococcus sp. FS406-22] gi|288938874|gb|ADC69629.1| coenzyme F420 hydrogenase, subunit gamma [Methanocaldococcus sp. FS406-22] Length = 227 Score = 42.4 bits (98), Expect = 0.031, Method: Compositional matrix adjust. Identities = 21/85 (24%), Positives = 42/85 (49%), Gaps = 9/85 (10%) Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS---------YSV 142 + D+ +V G++ +L + + + V+++G+CA GG Y +S Sbjct: 49 ECDIALVEGSVCLDDHHSLEVAQEVRKKAKIVVALGACAATGGVTRYCKGNQLSKPVHSS 108 Query: 143 VRGCDRIVPVDIYVPGCPPTAEALI 167 ++ VD+ +PGCPP+ EA++ Sbjct: 109 FSPLTEVIKVDLAIPGCPPSPEAIV 133 >gi|134045239|ref|YP_001096725.1| coenzyme F420-reducing hydrogenase subunit gamma [Methanococcus maripaludis C5] gi|132662864|gb|ABO34510.1| coenzyme F420-reducing hydrogenase, gamma subunit [Methanococcus maripaludis C5] Length = 228 Score = 42.0 bits (97), Expect = 0.036, Method: Compositional matrix adjust. Identities = 20/94 (21%), Positives = 44/94 (46%), Gaps = 9/94 (9%) Query: 87 RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS------- 139 R P D++++ G++ A+ D + + ++++G+CA G +S Sbjct: 45 REVPDDVDIILLEGSVCLSDHHAMEVALDSRKKAKILVALGACAATGNVTRFSKGNQPSK 104 Query: 140 --YSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171 + +V D+ +PGCPP+ E+++ +L Sbjct: 105 PVHDAFAPLTEVVKCDLAIPGCPPSPESIVAVVL 138 >gi|150402553|ref|YP_001329847.1| coenzyme F420 hydrogenase [Methanococcus maripaludis C7] gi|159905672|ref|YP_001549334.1| coenzyme F420 hydrogenase subunit gamma [Methanococcus maripaludis C6] gi|150033583|gb|ABR65696.1| Coenzyme F420 hydrogenase [Methanococcus maripaludis C7] gi|159887165|gb|ABX02102.1| coenzyme F420 hydrogenase, subunit gamma [Methanococcus maripaludis C6] Length = 228 Score = 42.0 bits (97), Expect = 0.036, Method: Compositional matrix adjust. Identities = 20/94 (21%), Positives = 44/94 (46%), Gaps = 9/94 (9%) Query: 87 RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS------- 139 R P D++++ G++ A+ D + + ++++G+CA G +S Sbjct: 45 REVPDDVDIILLEGSVCLSDHHAMEVALDSRKKAKILVALGACAATGNVTRFSKGNQPSK 104 Query: 140 --YSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171 + +V D+ +PGCPP+ E+++ +L Sbjct: 105 PVHDAFAPLTEVVKCDLAIPGCPPSPESIVAVVL 138 >gi|134045688|ref|YP_001097174.1| coenzyme F420-reducing hydrogenase subunit gamma [Methanococcus maripaludis C5] gi|132663313|gb|ABO34959.1| coenzyme F420-reducing hydrogenase, gamma subunit [Methanococcus maripaludis C5] Length = 242 Score = 42.0 bits (97), Expect = 0.039, Method: Compositional matrix adjust. Identities = 21/94 (22%), Positives = 45/94 (47%), Gaps = 9/94 (9%) Query: 87 RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-------- 138 R P D+ +V G++ ++ + + V+++G+CA GG + Sbjct: 59 RKIPEDIDIALVEGSVCLDDHHSVEDILTTRKNSKIVVALGACAASGGVTRFGRGNQMPQ 118 Query: 139 -SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171 S++ ++ VD+ +PGCPP+ E+++ I+ Sbjct: 119 PSHASFVPIGDVIKVDLALPGCPPSPESIVNLIM 152 >gi|240102125|ref|YP_002958433.1| Coenzyme F420 hydrogenase subunit gamma (frhG) [Thermococcus gammatolerans EJ3] gi|239909678|gb|ACS32569.1| Coenzyme F420 hydrogenase subunit gamma (frhG) [Thermococcus gammatolerans EJ3] Length = 229 Score = 42.0 bits (97), Expect = 0.042, Method: Compositional matrix adjust. Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 9/84 (10%) Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS---------YSV 142 + DV ++ G L + + + R V++ GSCA+ GG ++ + Sbjct: 51 EYDVALITGGACMNEPRILEELKEIREKARVVVAFGSCASLGGILRFARGGQEPRPDHRN 110 Query: 143 VRGCDRIVPVDIYVPGCPPTAEAL 166 + + ++PVD +PGCPPT + L Sbjct: 111 FQPINSVIPVDYSIPGCPPTPQML 134 >gi|315079804|gb|EFT51780.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes HL078PA1] Length = 132 Score = 41.6 bits (96), Expect = 0.048, Method: Compositional matrix adjust. Identities = 40/125 (32%), Positives = 59/125 (47%), Gaps = 8/125 (6%) Query: 45 QLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTN 104 + + W GS+ + LACC VE A + + P +P V++V+GT+T Sbjct: 2 KFIDWFADGSVYVVDLALACCGVESGAAVLANAPVREE--IPDGAPI---VVLVSGTVTT 56 Query: 105 KMASALRRVYDQMP--EPRYVISMGSCANGGGYYHYSYSVVRGC-DRIVPVDIYVPGCPP 161 +A + ++ P V + G+CA GG Y S VV G D V D ++PGCPP Sbjct: 57 GLAPVVSDTVHELKRNHPVDVAAFGACACAGGPYWDSAGVVAGLPDAGVDADHWIPGCPP 116 Query: 162 TAEAL 166 E L Sbjct: 117 GPETL 121 >gi|1396038|dbj|BAA07792.1| ndhK [Anthoceros formosae] Length = 80 Score = 41.6 bits (96), Expect = 0.050, Method: Compositional matrix adjust. Identities = 17/57 (29%), Positives = 29/57 (50%) Query: 27 SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFG 83 S + E T ++T+ + WAR SL + +G +CC +E R+D +R+G Sbjct: 24 SSLPDETTSDSTILTTFNDFSNWARLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYG 80 >gi|300903499|ref|ZP_07121424.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 84-1] gi|301302841|ref|ZP_07208969.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 124-1] gi|300404531|gb|EFJ88069.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 84-1] gi|300841776|gb|EFK69536.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 124-1] gi|315256505|gb|EFU36473.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 85-1] Length = 133 Score = 41.6 bits (96), Expect = 0.050, Method: Compositional matrix adjust. Identities = 17/46 (36%), Positives = 26/46 (56%) Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKM 106 G C +E+ A P +D ERFG +SPR +D+++ G +T M Sbjct: 43 GCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAM 88 >gi|116624101|ref|YP_826257.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Candidatus Solibacter usitatus Ellin6076] gi|116227263|gb|ABJ85972.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Candidatus Solibacter usitatus Ellin6076] Length = 176 Score = 41.6 bits (96), Expect = 0.055, Method: Compositional matrix adjust. Identities = 30/113 (26%), Positives = 48/113 (42%), Gaps = 34/113 (30%) Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY----YHYSYSVV-- 143 P DV +V G ++++ LRR+ + ++S+G CA G + S V Sbjct: 51 PENVDVTLVEGAISSE--EDLRRIRLVRSRTKILVSLGDCAVNGNVPAMRNQFGASAVLK 108 Query: 144 -------------------------RGCDRIVPVDIYVPGCPPTAEALIYGIL 171 R +VPVD++VPGCPP+A+ LI+ +L Sbjct: 109 RAYLENGTLDAQIPRQVIPTLLPLTRPVHELVPVDLFVPGCPPSAD-LIFSVL 160 >gi|150401467|ref|YP_001325233.1| coenzyme F420 hydrogenase [Methanococcus aeolicus Nankai-3] gi|150014170|gb|ABR56621.1| Coenzyme F420 hydrogenase [Methanococcus aeolicus Nankai-3] Length = 227 Score = 41.2 bits (95), Expect = 0.069, Method: Compositional matrix adjust. Identities = 23/92 (25%), Positives = 47/92 (51%), Gaps = 16/92 (17%) Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY------------YHYS 139 ++D+++V G++ A+ D + + ++++G+CA GG H S Sbjct: 49 EADIILVEGSVCLDDHHAMEIAQDVGKKAKILVALGACAATGGITRFCRGGQMSKPIHSS 108 Query: 140 YSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171 +S + +V D+ +PGCPP+ E +I G++ Sbjct: 109 FSPIT---EVVKCDLAIPGCPPSPE-IIVGLI 136 >gi|73667997|ref|YP_304012.1| coenzyme F420-reducing hydrogenase subunit gamma [Methanosarcina barkeri str. Fusaro] gi|72395159|gb|AAZ69432.1| coenzyme F420-reducing hydrogenase, gamma subunit [Methanosarcina barkeri str. Fusaro] Length = 293 Score = 41.2 bits (95), Expect = 0.070, Method: Compositional matrix adjust. Identities = 20/84 (23%), Positives = 42/84 (50%), Gaps = 9/84 (10%) Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCA---------NGGGYYHYSYSV 142 + DV +V G++ + ++ + + + + V+++GSCA GG + + Sbjct: 87 EMDVALVEGSVCLQDHESVEDIKETRKKSKIVVALGSCACYGNITRFSRGGQHNQPQHES 146 Query: 143 VRGCDRIVPVDIYVPGCPPTAEAL 166 ++ VD+Y+PGCPP+ E + Sbjct: 147 YLPIGDLIDVDVYIPGCPPSPELI 170 >gi|296109198|ref|YP_003616147.1| hypothetical protein Metin_0513 [Methanocaldococcus infernus ME] gi|295434012|gb|ADG13183.1| hypothetical protein Metin_0513 [Methanocaldococcus infernus ME] Length = 226 Score = 41.2 bits (95), Expect = 0.073, Method: Compositional matrix adjust. Identities = 24/88 (27%), Positives = 44/88 (50%), Gaps = 15/88 (17%) Query: 91 RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY------------ 138 ++ DV +V G++ + AL + + + V+++G+CA GG Y Sbjct: 48 KECDVALVEGSVCLEDHHALEVAKEVREKAKIVVALGACAAFGGLTRYCKGNQLPKPVNS 107 Query: 139 SYSVVRGCDRIVPVDIYVPGCPPTAEAL 166 S+S + ++ VD +PGCPP+ EA+ Sbjct: 108 SFSPLT---EVIKVDYSIPGCPPSPEAI 132 >gi|85682156|sp|P80491|FRHG_METBF RecName: Full=Coenzyme F420 hydrogenase subunit gamma; AltName: Full=8-hydroxy-5-deazaflavin-reducing hydrogenase subunit gamma; Short=FRH gi|2463281|emb|CAA74092.1| F420-reducing hydrogenase isoenzyme II gamma subunit [Methanosarcina barkeri] Length = 259 Score = 40.8 bits (94), Expect = 0.094, Method: Compositional matrix adjust. Identities = 20/84 (23%), Positives = 42/84 (50%), Gaps = 9/84 (10%) Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCA---------NGGGYYHYSYSV 142 + DV +V G++ + ++ + + + + V+++GSCA GG + + Sbjct: 53 EMDVALVEGSVCLQDHESVEDIKETRKKSKIVVALGSCACYGNITRFSRGGQHNQPQHES 112 Query: 143 VRGCDRIVPVDIYVPGCPPTAEAL 166 ++ VD+Y+PGCPP+ E + Sbjct: 113 YLPIGDLIDVDVYIPGCPPSPELI 136 >gi|20093976|ref|NP_613823.1| coenzyme F420-reducing hydrogenase, gamma subunit [Methanopyrus kandleri AV19] gi|19886938|gb|AAM01753.1| Coenzyme F420-reducing hydrogenase, gamma subunit [Methanopyrus kandleri AV19] Length = 238 Score = 40.4 bits (93), Expect = 0.10, Method: Compositional matrix adjust. Identities = 24/97 (24%), Positives = 44/97 (45%), Gaps = 15/97 (15%) Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY------------YHYS 139 +D++ V G + A L ++ + V+S+GSCA GG+ YH++ Sbjct: 42 DADILFVEGAVDFADAETLEKLEEAASAVSTVVSLGSCAATGGFERHVIGMRDPDRYHFT 101 Query: 140 YSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKK 176 V + V D + GCPPT + + + L+++ Sbjct: 102 ---VFPAAKFVETDYAINGCPPTTDVIASFLRALEEE 135 >gi|213028132|ref|ZP_03342579.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 102 Score = 40.4 bits (93), Expect = 0.11, Method: Compositional matrix adjust. Identities = 17/50 (34%), Positives = 26/50 (52%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVY 114 C +E+ P +D ERFG SPR +D+++ G +T M S R + Sbjct: 51 CEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAW 100 >gi|156742696|ref|YP_001432825.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Roseiflexus castenholzii DSM 13941] gi|156234024|gb|ABU58807.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Roseiflexus castenholzii DSM 13941] Length = 125 Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust. Identities = 30/107 (28%), Positives = 51/107 (47%), Gaps = 10/107 (9%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +EM+ A D+ A SP ++DV+++ G LT+ +AL + ++ ++ Sbjct: 19 CDLEMIAAISETADI-----AWATSPHEADVLLITGPLTHSAKTALVALMQELAHQPPLL 73 Query: 125 SMGSCA-NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGI 170 ++G CA +G + + V G V VD GCPP +I I Sbjct: 74 AIGRCAIDGHPFGRGGLTSVAGLTMQVSVD----GCPPEHARIIESI 116 >gi|116326949|ref|YP_796669.1| metal (Ni/Fe) hydrogenase, small subunit [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116332385|ref|YP_802103.1| metal (Ni/Fe) hydrogenase, small subunit [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116119693|gb|ABJ77736.1| Metal (Ni/Fe) hydrogenase, small subunit [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116126074|gb|ABJ77345.1| Metal (Ni/Fe) hydrogenase, small subunit [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 273 Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust. Identities = 21/86 (24%), Positives = 39/86 (45%), Gaps = 7/86 (8%) Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCD 147 ASP+ +D ++ +G + M L ++ MP P+ +++ GS A GG + Sbjct: 172 ASPKHADALVYSGPVGPNMEEPLNTAWETMPSPKALVACGSEAVSGGLFKLGKLPKEP-- 229 Query: 148 RIVPVDIYVPGCPPTAEALIYGILLL 173 D+++ G PP + +I L Sbjct: 230 -----DLFIGGDPPRPDVIISAFRYL 250 >gi|302882588|ref|XP_003040202.1| predicted protein [Nectria haematococca mpVI 77-13-4] gi|256721074|gb|EEU34489.1| predicted protein [Nectria haematococca mpVI 77-13-4] Length = 49 Score = 40.0 bits (92), Expect = 0.14, Method: Composition-based stats. Identities = 27/49 (55%), Positives = 38/49 (77%) Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171 +IS+GS N GGYY+YSYS++RG ++I+PVDIY+ P ++ALIY I Sbjct: 1 IISIGSYINSGGYYYYSYSIIRGYNKIIPVDIYILSYPLISKALIYSIF 49 >gi|312137254|ref|YP_004004591.1| coenzyme f420-reducing hydrogenase, gamma subunit [Methanothermus fervidus DSM 2088] gi|311224973|gb|ADP77829.1| coenzyme F420-reducing hydrogenase, gamma subunit [Methanothermus fervidus DSM 2088] Length = 254 Score = 39.7 bits (91), Expect = 0.18, Method: Compositional matrix adjust. Identities = 20/84 (23%), Positives = 41/84 (48%), Gaps = 9/84 (10%) Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY---------SYSV 142 + D+ +V G++ + ++ + + + + ++GSCA GG+ Y S+ Sbjct: 74 EMDLALVEGSVCIQDEHSVEELMEAREKADLLCALGSCAMTGGFTRYARGGQQAQPSHES 133 Query: 143 VRGCDRIVPVDIYVPGCPPTAEAL 166 +V VD+ +PGCPP+ E + Sbjct: 134 FLPISELVKVDLAIPGCPPSPEII 157 >gi|150399445|ref|YP_001323212.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanococcus vannielii SB] gi|150012148|gb|ABR54600.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanococcus vannielii SB] Length = 228 Score = 39.7 bits (91), Expect = 0.18, Method: Compositional matrix adjust. Identities = 20/90 (22%), Positives = 43/90 (47%), Gaps = 15/90 (16%) Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY------------YH 137 P D++++ G++ AL + + + ++++G+CA G H Sbjct: 48 PDNVDIILLEGSVCLSDHHALEVALESRKKAKILVALGACAASGNITRFCKGNQMSKPIH 107 Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALI 167 S++ + +V D+ +PGCPP+ EA++ Sbjct: 108 DSFAPLT---EVVKCDLAIPGCPPSPEAIV 134 >gi|333001062|gb|EGK20632.1| ech hydrogenase subunit C [Shigella flexneri K-272] gi|333015433|gb|EGK34772.1| ech hydrogenase subunit C [Shigella flexneri K-227] Length = 99 Score = 39.7 bits (91), Expect = 0.18, Method: Compositional matrix adjust. Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 1/48 (2%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS-ALR 111 C +E+ P +D ERFG SPR +D+++ G +T M S ALR Sbjct: 51 CEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALR 98 >gi|149717|gb|AAA72189.1| F420 hydrogenase gamma-subuint (frhG) [Methanothermobacter thermautotrophicus] Length = 236 Score = 39.7 bits (91), Expect = 0.19, Method: Compositional matrix adjust. Identities = 24/92 (26%), Positives = 45/92 (48%), Gaps = 11/92 (11%) Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS----------YS 141 + D+ +V G++ + +L + + + + V + GSCA G + YS S Sbjct: 56 EMDLALVEGSVCLQDEHSLHELKELREKAKLVCAFGSCAQTGCFTRYSRGGQQAQPSHES 115 Query: 142 VVRGCDRIVPVDIYVPGCPPTAEALIYGILLL 173 V D ++ VD+ +PGCPP+ E + ++ L Sbjct: 116 FVPIAD-LIDVDLAIPGCPPSPEIIAKAVVAL 146 >gi|182415490|ref|YP_001820556.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Opitutus terrae PB90-1] gi|177842704|gb|ACB76956.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Opitutus terrae PB90-1] Length = 334 Score = 39.3 bits (90), Expect = 0.22, Method: Compositional matrix adjust. Identities = 28/80 (35%), Positives = 38/80 (47%), Gaps = 6/80 (7%) Query: 110 LRRVYDQMP---EPRYVISMGSCANGGGYYHYSY--SVVRGCDRIVPVDIYVPGCPPTAE 164 L VY+Q P P +V + N G VR D++V VD Y+PGCPPT + Sbjct: 112 LSYVYEQTPTIDNPTHVRPQPAHQNNGHSLTLPEFRHTVRSLDQVVAVDYYIPGCPPTPK 171 Query: 165 ALIYGIL-LLQKKIRRVGNV 183 I LL+ K+ G+V Sbjct: 172 ITKAAITALLEGKLPPRGSV 191 >gi|24216977|ref|NP_714458.1| metal (Ni/Fe) hydrogenase small subunit [Leptospira interrogans serovar Lai str. 56601] gi|24198376|gb|AAN51476.1| metal (Ni/Fe) hydrogenase small subunit [Leptospira interrogans serovar Lai str. 56601] Length = 273 Score = 39.3 bits (90), Expect = 0.27, Method: Compositional matrix adjust. Identities = 20/86 (23%), Positives = 40/86 (46%), Gaps = 7/86 (8%) Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCD 147 ASP+ +D ++ +G + M L ++ MP P+ +++ GS A GG + + Sbjct: 172 ASPKHADALVYSGPVGPNMEGPLDTAWETMPSPKALVACGSEAVSGGLFKLGKLPKQP-- 229 Query: 148 RIVPVDIYVPGCPPTAEALIYGILLL 173 D+++ G PP + ++ L Sbjct: 230 -----DLFIGGDPPRPDVIVSAFRYL 250 >gi|45659241|ref|YP_003327.1| hydrogenase subunit [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|45602487|gb|AAS71964.1| hydrogenase subunit [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 273 Score = 39.3 bits (90), Expect = 0.27, Method: Compositional matrix adjust. Identities = 20/86 (23%), Positives = 40/86 (46%), Gaps = 7/86 (8%) Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCD 147 ASP+ +D ++ +G + M L ++ MP P+ +++ GS A GG + + Sbjct: 172 ASPKHADALVYSGPVGPNMEGPLDTAWETMPSPKALVACGSEAVSGGLFKLGKLPKQP-- 229 Query: 148 RIVPVDIYVPGCPPTAEALIYGILLL 173 D+++ G PP + ++ L Sbjct: 230 -----DLFIGGDPPRPDVIVSAFRYL 250 >gi|254173024|ref|ZP_04879698.1| hydrogenase (cytochrome-c3 hydrogenase delta chain) [Thermococcus sp. AM4] gi|214033180|gb|EEB74008.1| hydrogenase (cytochrome-c3 hydrogenase delta chain) [Thermococcus sp. AM4] Length = 241 Score = 39.3 bits (90), Expect = 0.28, Method: Compositional matrix adjust. Identities = 33/125 (26%), Positives = 53/125 (42%), Gaps = 24/125 (19%) Query: 77 YDLERFGFAPRASPRQSDVMIVAGTL-TNKMASALRRVYDQMPEPRYVISMGSCANGG-- 133 Y++E F A R R DV +V GT+ +++ LR ++ Y+I++G+CA G Sbjct: 32 YEIEEFHMATRLEGRHFDVGLVTGTVSSHRDLEVLREARNRS---DYLIALGTCATHGCL 88 Query: 134 -------------GYYHYSYSVVRGCD-----RIVPVDIYVPGCPPTAEALIYGILLLQK 175 Y + +R D V VD+ +PGCP L ++ + K Sbjct: 89 QASVELPLKEKLKAVYGDEGNPMRALDPKPVVEYVTVDLAIPGCPYDKNELFQALIDIAK 148 Query: 176 KIRRV 180 I V Sbjct: 149 GIEPV 153 >gi|114707869|ref|ZP_01440762.1| hypothetical protein FP2506_00150 [Fulvimarina pelagi HTCC2506] gi|114536647|gb|EAU39778.1| hypothetical protein FP2506_00150 [Fulvimarina pelagi HTCC2506] Length = 391 Score = 38.9 bits (89), Expect = 0.31, Method: Compositional matrix adjust. Identities = 16/41 (39%), Positives = 25/41 (60%) Query: 84 FAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 F ASPR + + ++AG + + LRR++DQMP PR + Sbjct: 24 FVRAASPRHAAIFLIAGRMRLEDREDLRRLHDQMPHPRVTL 64 >gi|44707|emb|CAA43502.1| F420-reducing hydrogenase subunit [Methanococcus voltae PS] Length = 228 Score = 38.9 bits (89), Expect = 0.32, Method: Compositional matrix adjust. Identities = 19/90 (21%), Positives = 41/90 (45%), Gaps = 9/90 (10%) Query: 87 RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS------- 139 R P D++++ G++ AL + + ++++G+CA G +S Sbjct: 45 REVPDDVDIILLEGSVCLSDHHALETALACREKAKILVALGACAASGNITRFSRGGQMSK 104 Query: 140 --YSVVRGCDRIVPVDIYVPGCPPTAEALI 167 + +V D+ +PGCPP+ E+++ Sbjct: 105 PVHDAFAPLTEVVKCDLAIPGCPPSPESIV 134 >gi|3334464|sp|P19498|FRHG_METTH RecName: Full=Coenzyme F420 hydrogenase subunit gamma; AltName: Full=8-hydroxy-5-deazaflavin-reducing hydrogenase subunit gamma; Short=FRH Length = 236 Score = 38.9 bits (89), Expect = 0.32, Method: Compositional matrix adjust. Identities = 24/92 (26%), Positives = 45/92 (48%), Gaps = 11/92 (11%) Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS----------YS 141 + D+ +V G++ + +L + + + + V + GSCA G + YS S Sbjct: 56 EMDLALVEGSVCLQDEHSLHELKELREKAKLVCAFGSCAATGCFTRYSRGGQQAQPSHES 115 Query: 142 VVRGCDRIVPVDIYVPGCPPTAEALIYGILLL 173 V D ++ VD+ +PGCPP+ E + ++ L Sbjct: 116 FVPIAD-LIDVDLAIPGCPPSPEIIAKAVVAL 146 >gi|15679300|ref|NP_276417.1| coenzyme F420-reducing hydrogenase, gamma subunit [Methanothermobacter thermautotrophicus str. Delta H] gi|2622405|gb|AAB85778.1| coenzyme F420-reducing hydrogenase, gamma subunit [Methanothermobacter thermautotrophicus str. Delta H] Length = 275 Score = 38.9 bits (89), Expect = 0.32, Method: Compositional matrix adjust. Identities = 24/92 (26%), Positives = 45/92 (48%), Gaps = 11/92 (11%) Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS----------YS 141 + D+ +V G++ + +L + + + + V + GSCA G + YS S Sbjct: 95 EMDLALVEGSVCLQDEHSLHELKELREKAKLVCAFGSCAATGCFTRYSRGGQQAQPSHES 154 Query: 142 VVRGCDRIVPVDIYVPGCPPTAEALIYGILLL 173 V D ++ VD+ +PGCPP+ E + ++ L Sbjct: 155 FVPIAD-LIDVDLAIPGCPPSPEIIAKAVVAL 185 >gi|45358947|ref|NP_988504.1| coenzyme F420-reducing hydrogenase subunit gamma [Methanococcus maripaludis S2] gi|45047813|emb|CAF30940.1| coenzyme F420-reducing hydrogenase subunit gamma [Methanococcus maripaludis S2] Length = 228 Score = 38.9 bits (89), Expect = 0.34, Method: Compositional matrix adjust. Identities = 19/94 (20%), Positives = 44/94 (46%), Gaps = 9/94 (9%) Query: 87 RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS------- 139 R P D++++ G++ A+ + + + ++++G+CA G +S Sbjct: 45 REIPDDVDIVLLEGSVCLSDHHAMEVALESRKKGKILVALGACAASGNITRFSKGNQPSK 104 Query: 140 --YSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171 + +V D+ +PGCPP+ E+++ +L Sbjct: 105 PVHDSFAPLTEVVKCDLAIPGCPPSPESIVAVVL 138 >gi|154243755|ref|YP_001409328.1| Ni Fe-hydrogenase III large subunit-like protein [Xanthobacter autotrophicus Py2] gi|154246208|ref|YP_001417166.1| Ni Fe-hydrogenase III large subunit-like protein [Xanthobacter autotrophicus Py2] gi|154160293|gb|ABS67509.1| Ni Fe-hydrogenase III large subunit-like protein [Xanthobacter autotrophicus Py2] gi|154162877|gb|ABS70092.1| Ni Fe-hydrogenase III large subunit-like protein [Xanthobacter autotrophicus Py2] Length = 110 Score = 38.9 bits (89), Expect = 0.36, Method: Compositional matrix adjust. Identities = 20/52 (38%), Positives = 26/52 (50%) Query: 77 YDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGS 128 DL R G PRQ++V++V L M A Y QMP PR V+ +G Sbjct: 46 LDLSRAGLTEADGPRQANVLLVMLPLPAPMLKAATVAYAQMPRPRTVLVLGE 97 >gi|218782785|ref|YP_002434103.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfatibacillum alkenivorans AK-01] gi|218764169|gb|ACL06635.1| F420-non-reducing hydrogenase, iron-sulfur subunit, MvhG [Desulfatibacillum alkenivorans AK-01] Length = 312 Score = 38.5 bits (88), Expect = 0.39, Method: Compositional matrix adjust. Identities = 28/116 (24%), Positives = 51/116 (43%), Gaps = 34/116 (29%) Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGG----------------Y 135 Q+DV I++G + N+ + +V + ++I++G+CA GG Y Sbjct: 61 QADVGIISGGIRNEEHLEVAKVMRE--RCGFIIALGTCATHGGIPSLANSYTPEQIFERY 118 Query: 136 YHYSYS-------------VVRGCDRI---VPVDIYVPGCPPTAEALIYGILLLQK 175 YH + ++ CD + + VD+ VPGCPP + + ++ L K Sbjct: 119 YHTETTDPADFVPNQGLPALLESCDAVDQHIKVDLLVPGCPPHPDHIFSALVALVK 174 >gi|297619514|ref|YP_003707619.1| coenzyme F420 hydrogenase subunit gamma [Methanococcus voltae A3] gi|297378491|gb|ADI36646.1| coenzyme F420 hydrogenase, subunit gamma [Methanococcus voltae A3] Length = 228 Score = 38.5 bits (88), Expect = 0.45, Method: Compositional matrix adjust. Identities = 19/90 (21%), Positives = 40/90 (44%), Gaps = 9/90 (10%) Query: 87 RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS------- 139 R P D++++ G++ AL + + ++++G+CA G +S Sbjct: 45 REVPDDVDIILLEGSVCINDHHALETALACRKKAKILVALGACAASGNITRFSRGGQMSK 104 Query: 140 --YSVVRGCDRIVPVDIYVPGCPPTAEALI 167 + +V D+ +PGCPP+ E ++ Sbjct: 105 PVHDAFAPLTEVVKCDLAIPGCPPSPEIIV 134 >gi|15668907|ref|NP_247711.1| coenzyme F420-reducing hydrogenase subunit gamma [Methanocaldococcus jannaschii DSM 2661] gi|2496112|sp|Q58136|Y726_METJA RecName: Full=Uncharacterized protein MJ0726 gi|1591442|gb|AAB98722.1| coenzyme F420-reducing hydrogenase, gamma subunit [Methanocaldococcus jannaschii DSM 2661] Length = 216 Score = 38.1 bits (87), Expect = 0.49, Method: Compositional matrix adjust. Identities = 19/83 (22%), Positives = 40/83 (48%), Gaps = 7/83 (8%) Query: 91 RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR-- 148 ++ D+++V G + ++++ + + +I++GSCA GG+ + G + Sbjct: 23 KEKDIVLVGGAVNLDDEEEVKKIMEIRKNSKVLIAVGSCAVSGGFQRMLIGLENGFPQRF 82 Query: 149 -----IVPVDIYVPGCPPTAEAL 166 +V VD + GCPP E + Sbjct: 83 VRIGDVVKVDYAIIGCPPDEEEV 105 >gi|303243618|ref|ZP_07329960.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanothermococcus okinawensis IH1] gi|302486179|gb|EFL49101.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanothermococcus okinawensis IH1] Length = 145 Score = 38.1 bits (87), Expect = 0.50, Method: Compositional matrix adjust. Identities = 18/89 (20%), Positives = 44/89 (49%), Gaps = 9/89 (10%) Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS---------YSV 142 ++D++++ G++ A+ + + + ++++G+CA GG +S + Sbjct: 49 EADIVLLEGSVCLDDHHAMEVAQEARKKGKILVALGACAATGGVTRFSRGGQMSKPVHGS 108 Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGIL 171 +V D+ +PGCPP+ E ++ +L Sbjct: 109 FSPLTEVVKCDLAIPGCPPSPEIIVNVVL 137 >gi|14521156|ref|NP_126631.1| hydrogenase (cytochrome-c3 hydrogenase delta chain) [Pyrococcus abyssi GE5] gi|5458374|emb|CAB49862.1| Sulfhydrogenase II, delta chain [Pyrococcus abyssi GE5] Length = 241 Score = 38.1 bits (87), Expect = 0.52, Method: Compositional matrix adjust. Identities = 31/105 (29%), Positives = 44/105 (41%), Gaps = 23/105 (21%) Query: 77 YDLERFGFAPRASPRQS-DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY 135 YD+ F A R+ DV +V G+++ + L V D Y+I++G+CA GG Sbjct: 35 YDIAEFHMATSQRGREKLDVALVTGSVSTQ--RDLEVVKDARNRAEYLIALGTCATHGGV 92 Query: 136 Y-HYSYSVVRGCDRI-------------------VPVDIYVPGCP 160 SV G +I VPVD +PGCP Sbjct: 93 QGSIEGSVKEGLRKIYGDMKGPSKVLEPRAVVEHVPVDFAIPGCP 137 >gi|125539136|gb|EAY85531.1| hypothetical protein OsI_06904 [Oryza sativa Indica Group] Length = 65 Score = 38.1 bits (87), Expect = 0.57, Method: Compositional matrix adjust. Identities = 21/40 (52%), Positives = 25/40 (62%), Gaps = 2/40 (5%) Query: 38 FLVTSVDQLVTWARTGSLMW-MTFGLACCAVEMMQASMPR 76 F+++ VD L+ WAR G LMW MTF L AVEMM R Sbjct: 27 FVISKVDDLMNWARRG-LMWPMTFRLTYYAVEMMHKGASR 65 >gi|148656787|ref|YP_001276992.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Roseiflexus sp. RS-1] gi|148568897|gb|ABQ91042.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Roseiflexus sp. RS-1] Length = 127 Score = 38.1 bits (87), Expect = 0.59, Method: Compositional matrix adjust. Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 9/85 (10%) Query: 89 SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 148 +P ++DV+++ G LT A + ++ +I++G CA G + RG Sbjct: 34 TPHEADVLLLTGPLTTDTKKAFMALLQELDHRAPIIAVGRCAIDG------HPFGRGGVA 87 Query: 149 IVP---VDIYVPGCPPTAEALIYGI 170 ++P V + + GCPPT ++ I Sbjct: 88 VIPNLTVHLSLDGCPPTPTQIVEAI 112 >gi|320160377|ref|YP_004173601.1| bidirectional hydrogenase Y subunit [Anaerolinea thermophila UNI-1] gi|319994230|dbj|BAJ63001.1| bidirectional hydrogenase Y subunit [Anaerolinea thermophila UNI-1] Length = 180 Score = 38.1 bits (87), Expect = 0.60, Method: Compositional matrix adjust. Identities = 13/26 (50%), Positives = 18/26 (69%) Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIY 168 VR +VPVD++VPGCPP + + Y Sbjct: 134 VRAVHEVVPVDVFVPGCPPDPDVIFY 159 >gi|148255573|ref|YP_001240158.1| hypothetical protein BBta_4195 [Bradyrhizobium sp. BTAi1] gi|146407746|gb|ABQ36252.1| hypothetical protein BBta_4195 [Bradyrhizobium sp. BTAi1] Length = 73 Score = 37.7 bits (86), Expect = 0.70, Method: Compositional matrix adjust. Identities = 18/26 (69%), Positives = 19/26 (73%) Query: 133 GGYYHYSYSVVRGCDRIVPVDIYVPG 158 GG YH+ SVV GC RIVPVD YV G Sbjct: 13 GGDYHHDCSVVGGCSRIVPVDSYVLG 38 >gi|304315421|ref|YP_003850568.1| F420-reducing hydrogenase, subunit gamma [Methanothermobacter marburgensis str. Marburg] gi|302588880|gb|ADL59255.1| F420-reducing hydrogenase, subunit gamma [Methanothermobacter marburgensis str. Marburg] Length = 275 Score = 37.4 bits (85), Expect = 0.87, Method: Compositional matrix adjust. Identities = 24/92 (26%), Positives = 45/92 (48%), Gaps = 11/92 (11%) Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS----------YS 141 + D+ +V G++ + +L + + + + V + GSCA G + YS S Sbjct: 95 EMDLALVEGSVCLQDEHSLHELKELREKAKLVCAFGSCAATGCFTRYSRGGQQAQPSHES 154 Query: 142 VVRGCDRIVPVDIYVPGCPPTAEALIYGILLL 173 V D ++ VD+ +PGCPP+ E + ++ L Sbjct: 155 FVPIAD-LIDVDLALPGCPPSPEIIAKTVVAL 185 >gi|332159193|ref|YP_004424472.1| hydrogenase (cytochrome-c3 hydrogenase delta chain) [Pyrococcus sp. NA2] gi|331034656|gb|AEC52468.1| hydrogenase (cytochrome-c3 hydrogenase delta chain) [Pyrococcus sp. NA2] Length = 239 Score = 37.4 bits (85), Expect = 0.91, Method: Compositional matrix adjust. Identities = 32/125 (25%), Positives = 54/125 (43%), Gaps = 23/125 (18%) Query: 77 YDLERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY 135 Y++ F A + S + DV IV G+++ + L V + Y+I++G+CA GG Sbjct: 33 YEIVEFHMATSQRSKEKLDVAIVTGSVSTQ--RDLEVVKEARNRAEYLIALGTCATHGGV 90 Query: 136 -----------YHYSYSVVRGCDRI---------VPVDIYVPGCPPTAEALIYGILLLQK 175 Y +RG ++ VPVD +PGCP E + ++ + K Sbjct: 91 QGGLENSVKENMKKVYGDIRGPTKVLEPRAVIDYVPVDFAIPGCPYEKEEVFQVLIDIAK 150 Query: 176 KIRRV 180 + V Sbjct: 151 GVDPV 155 >gi|116662187|ref|YP_829242.1| hypothetical protein Arth_4492 [Arthrobacter sp. FB24] gi|116612939|gb|ABK05661.1| hypothetical protein Arth_4492 [Arthrobacter sp. FB24] Length = 364 Score = 37.4 bits (85), Expect = 0.96, Method: Compositional matrix adjust. Identities = 16/54 (29%), Positives = 30/54 (55%) Query: 78 DLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCAN 131 DL G+ P SP +D++ + G +A L R++D++P PR ++ + A+ Sbjct: 35 DLVERGWVPALSPADADILCLCGEPAADLAGVLDRIWDELPSPRARTTVVAAAD 88 >gi|254459031|ref|ZP_05072454.1| NADH ubiquinone oxidoreductase, 20 kda subunit [Campylobacterales bacterium GD 1] gi|207084302|gb|EDZ61591.1| NADH ubiquinone oxidoreductase, 20 kda subunit [Campylobacterales bacterium GD 1] Length = 287 Score = 37.4 bits (85), Expect = 1.0, Method: Compositional matrix adjust. Identities = 27/100 (27%), Positives = 48/100 (48%), Gaps = 16/100 (16%) Query: 94 DVMIVAGTLTNKMASALRRVYDQMPE----PRYVISMGSCANGGGYYHYS-YSVVRGC-- 146 D+M++ GT+++ A V D + + + ++++G+CA GG + S Y G Sbjct: 54 DIMLIEGTISDDFKRADVLVVDIIKKYAKIVKKIVTVGTCATFGGIFKESDYENATGLHF 113 Query: 147 DRIVPVD---------IYVPGCPPTAEALIYGILLLQKKI 177 DR P+D I V GCP E L+ + ++K + Sbjct: 114 DRNKPIDSFKNLLDKTISVSGCPVHPETLVNTLYAIKKSV 153 >gi|300088029|ref|YP_003758551.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299527762|gb|ADJ26230.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 249 Score = 37.4 bits (85), Expect = 1.0, Method: Compositional matrix adjust. Identities = 31/126 (24%), Positives = 51/126 (40%), Gaps = 36/126 (28%) Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY--------------- 136 + D+ + G++T + S + R+ + ++++G+CA GG Sbjct: 50 EYDIAFIEGSITRE--SEIARLKEIRERAAVLVALGACACTGGINCMKNAYETEELLKGV 107 Query: 137 ------HYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGI--LLLQKK-----------I 177 +Y R D +V VD Y+ GCPPT + + LLL KK Sbjct: 108 YGDCAAYYDTIPTRPADAVVKVDAYIRGCPPTTTEFVKVVKSLLLGKKADLPNYPVCTEC 167 Query: 178 RRVGNV 183 RR GN+ Sbjct: 168 RRAGNI 173 >gi|254431413|ref|ZP_05045116.1| F420-non reducing hydrogenase, subunit gamma [Cyanobium sp. PCC 7001] gi|197625866|gb|EDY38425.1| F420-non reducing hydrogenase, subunit gamma [Cyanobium sp. PCC 7001] Length = 193 Score = 37.0 bits (84), Expect = 1.2, Method: Compositional matrix adjust. Identities = 37/136 (27%), Positives = 49/136 (36%), Gaps = 46/136 (33%) Query: 84 FAPRAS-----PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCA-------- 130 F+P AS P DV +V G + N A L R V+S G CA Sbjct: 45 FSPVASDIKQFPENVDVCLVEGAVAN--ADNLELALQLRQRSRLVVSFGDCAVTGNVPAL 102 Query: 131 -------NGG--------GYYHYS----------------YSVVRGCDRIVPVDIYVPGC 159 +GG GY + VR ++ VD+Y+PGC Sbjct: 103 RNLWSEVDGGSRQSVLDRGYLELADTGAQHPHAPGIVPELLERVRPLHEVIAVDLYLPGC 162 Query: 160 PPTAEALIYGILLLQK 175 PP+AE + I L K Sbjct: 163 PPSAERIRAAIEPLLK 178 >gi|217966523|ref|YP_002352029.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Dictyoglomus turgidum DSM 6724] gi|217335622|gb|ACK41415.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Dictyoglomus turgidum DSM 6724] Length = 180 Score = 36.6 bits (83), Expect = 1.5, Method: Compositional matrix adjust. Identities = 11/25 (44%), Positives = 20/25 (80%) Query: 144 RGCDRIVPVDIYVPGCPPTAEALIY 168 + + ++ VD+Y+PGCPP+A+A+ Y Sbjct: 135 KAVNEVIKVDLYIPGCPPSADAIYY 159 >gi|206900904|ref|YP_002251593.1| NAD-reducing hydrogenase HoxS delta subunit [Dictyoglomus thermophilum H-6-12] gi|206740007|gb|ACI19065.1| NAD-reducing hydrogenase HoxS delta subunit [Dictyoglomus thermophilum H-6-12] Length = 180 Score = 36.6 bits (83), Expect = 1.6, Method: Compositional matrix adjust. Identities = 12/25 (48%), Positives = 20/25 (80%) Query: 144 RGCDRIVPVDIYVPGCPPTAEALIY 168 + + ++ VD+YVPGCPP+A+A+ Y Sbjct: 135 KAVNEVIKVDLYVPGCPPSADAIYY 159 >gi|147919453|ref|YP_686807.1| coenzyme F420-reducing hydrogenase, gamma subunit [uncultured methanogenic archaeon RC-I] gi|110622203|emb|CAJ37481.1| coenzyme F420-reducing hydrogenase, gamma subunit [uncultured methanogenic archaeon RC-I] Length = 233 Score = 36.6 bits (83), Expect = 1.7, Method: Compositional matrix adjust. Identities = 20/82 (24%), Positives = 38/82 (46%), Gaps = 9/82 (10%) Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCA---------NGGGYYHYSYSVVR 144 D+ IV G++ + ++ + + + V+++G CA GG + Sbjct: 55 DISIVEGSVCLQDEHSVHLIKEAREKSGLVVALGGCAATGCVCNFCRGGQANQPQHESFV 114 Query: 145 GCDRIVPVDIYVPGCPPTAEAL 166 +++V VD Y+PGCPP E + Sbjct: 115 PINKLVKVDAYIPGCPPAPEVI 136 >gi|325957978|ref|YP_004289444.1| coenzyme F420 hydrogenase subunit gamma [Methanobacterium sp. AL-21] gi|325329410|gb|ADZ08472.1| coenzyme F420 hydrogenase, subunit gamma [Methanobacterium sp. AL-21] Length = 261 Score = 36.6 bits (83), Expect = 1.7, Method: Compositional matrix adjust. Identities = 23/85 (27%), Positives = 43/85 (50%), Gaps = 11/85 (12%) Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS----------YS 141 + D+++V G++ + +++ + + + V++ GSCA G + YS S Sbjct: 81 EMDLVLVEGSVCLQDEHSVKELKEAREKAGLVVAFGSCAATGCFTRYSRGGQQARPDHES 140 Query: 142 VVRGCDRIVPVDIYVPGCPPTAEAL 166 V D +V VD +PGCPP+ E + Sbjct: 141 FVPIAD-LVKVDCAIPGCPPSPEII 164 >gi|119510365|ref|ZP_01629500.1| hydrogenase small subunit [Nodularia spumigena CCY9414] gi|119465002|gb|EAW45904.1| hydrogenase small subunit [Nodularia spumigena CCY9414] Length = 181 Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust. Identities = 28/111 (25%), Positives = 45/111 (40%), Gaps = 36/111 (32%) Query: 87 RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY------SY 140 + P+ DV++V G + N+ L+ ++ R ++S G CA G + Sbjct: 46 KEYPQGVDVVLVEGAVANE--DHLQMIHQVRERSRILVSFGDCAVTGNVTALRNPLGSAE 103 Query: 141 SVVRGC----------------------------DRIVPVDIYVPGCPPTA 163 V++ C +IVPVDIY+PGCPP+A Sbjct: 104 PVLQRCYIEAADIHGQIPHEPGIVPTLLDRVVPVHKIVPVDIYMPGCPPSA 154 >gi|219850771|ref|YP_002465203.1| coenzyme F420 hydrogenase, subunit gamma [Methanosphaerula palustris E1-9c] gi|219545030|gb|ACL15480.1| coenzyme F420 hydrogenase, subunit gamma [Methanosphaerula palustris E1-9c] Length = 253 Score = 36.2 bits (82), Expect = 2.0, Method: Compositional matrix adjust. Identities = 21/87 (24%), Positives = 41/87 (47%), Gaps = 15/87 (17%) Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY------------YHYS 139 + DV +V G++ + +A+ + + + V+++G CA G H S Sbjct: 53 EMDVALVEGSVCLQDKTAVEEIKETRERAKIVVALGGCACYGNITRFSRGGQQNQPQHES 112 Query: 140 YSVVRGCDRIVPVDIYVPGCPPTAEAL 166 Y + ++ VD+Y+PGC PT + + Sbjct: 113 YLPI---GDLIDVDVYIPGCAPTPQMI 136 >gi|282165081|ref|YP_003357466.1| coenzyme F420 hydrogenase subunit gamma [Methanocella paludicola SANAE] gi|282157395|dbj|BAI62483.1| coenzyme F420 hydrogenase subunit gamma [Methanocella paludicola SANAE] Length = 232 Score = 36.2 bits (82), Expect = 2.0, Method: Compositional matrix adjust. Identities = 19/82 (23%), Positives = 38/82 (46%), Gaps = 9/82 (10%) Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS---------YSVVR 144 D+ IV G + + ++ + + + V++ G C+ G ++S + Sbjct: 55 DIAIVEGGVCLQDEESVHLIKETREKAGLVVAYGGCSATGNVLNFSRGGQWNQPQHESFV 114 Query: 145 GCDRIVPVDIYVPGCPPTAEAL 166 +R++ VD Y+PGCPP E + Sbjct: 115 PINRLIKVDAYIPGCPPAPEVI 136 >gi|326775109|ref|ZP_08234374.1| hypothetical protein SACT1_0916 [Streptomyces cf. griseus XylebKG-1] gi|326655442|gb|EGE40288.1| hypothetical protein SACT1_0916 [Streptomyces cf. griseus XylebKG-1] Length = 440 Score = 36.2 bits (82), Expect = 2.2, Method: Compositional matrix adjust. Identities = 19/55 (34%), Positives = 31/55 (56%) Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142 + P +D++IVAGT +M + L RV++ +P PR I + + A+ G Y V Sbjct: 45 SGPADTDLLIVAGTPGPEMRTVLARVWELVPAPRVRIDLDTQASPGDIGRYLDEV 99 >gi|163744630|ref|ZP_02151990.1| hypothetical protein OIHEL45_03565 [Oceanibulbus indolifex HEL-45] gi|161381448|gb|EDQ05857.1| hypothetical protein OIHEL45_03565 [Oceanibulbus indolifex HEL-45] Length = 340 Score = 36.2 bits (82), Expect = 2.2, Method: Compositional matrix adjust. Identities = 13/33 (39%), Positives = 22/33 (66%) Query: 89 SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPR 121 +PR + V++V GT+ + L R++DQ+P PR Sbjct: 42 TPRAAAVLLVVGTIPEALIPQLHRLHDQLPHPR 74 >gi|18977703|ref|NP_579060.1| H-II delta (hydrogenase subunit delta) [Pyrococcus furiosus DSM 3638] gi|7406956|gb|AAF61853.1|AF176650_3 sulfhydrogenase II subunit d [Pyrococcus furiosus DSM 3638] gi|18893437|gb|AAL81455.1| H-II delta (hydrogenase subunit delta) [Pyrococcus furiosus DSM 3638] Length = 237 Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust. Identities = 32/126 (25%), Positives = 51/126 (40%), Gaps = 22/126 (17%) Query: 77 YDLERFGFAPRASPRQS-DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY 135 Y++ F A R+ DV +V GT++ + + R D Y+I++G+CA G Sbjct: 32 YEIAEFHMATSKKSREKIDVALVTGTVSTQRDLEVLR--DARNRSEYLIALGTCATHGSV 89 Query: 136 Y------HYSYSVVRGCDR-------------IVPVDIYVPGCPPTAEALIYGILLLQKK 176 +Y V G + VPVD +PGCP E + ++ + K Sbjct: 90 QGVIENSKEAYRRVYGNGKPPVKLLNPKPVTDYVPVDFAIPGCPYDKEEVFQVLIDIAKG 149 Query: 177 IRRVGN 182 I V Sbjct: 150 IEPVAK 155 >gi|188496128|ref|ZP_03003398.1| hydrogenase-4 component I [Escherichia coli 53638] gi|188491327|gb|EDU66430.1| hydrogenase-4 component I [Escherichia coli 53638] Length = 124 Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust. Identities = 16/33 (48%), Positives = 22/33 (66%), Gaps = 4/33 (12%) Query: 152 VDIYVPGCPPTAEALIYGIL----LLQKKIRRV 180 +D+++PGCPPT A I+G LLQ+KI V Sbjct: 6 IDVWIPGCPPTPAATIHGFAVALGLLQQKIHAV 38 >gi|182434584|ref|YP_001822303.1| hypothetical protein SGR_791 [Streptomyces griseus subsp. griseus NBRC 13350] gi|178463100|dbj|BAG17620.1| hypothetical protein [Streptomyces griseus subsp. griseus NBRC 13350] Length = 421 Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust. Identities = 19/55 (34%), Positives = 31/55 (56%) Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142 + P +D++IVAGT +M + L RV++ +P PR I + + A+ G Y V Sbjct: 29 SGPADTDLLIVAGTPGPEMRTVLARVWELVPAPRVRIDLDTQASPGDIGRYLDEV 83 >gi|333015434|gb|EGK34773.1| formate hydrogenlyase subunit 7 [Shigella flexneri K-227] Length = 118 Score = 35.8 bits (81), Expect = 2.5, Method: Compositional matrix adjust. Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 4/34 (11%) Query: 152 VDIYVPGCPPTAEALIYGIL----LLQKKIRRVG 181 +D+Y+PGCPPT A +YG LL++KI G Sbjct: 1 MDVYIPGCPPTPAATLYGFAMALGLLEQKIHARG 34 >gi|37787354|gb|AAP50522.1| Hox1Y [Thiocapsa roseopersicina] Length = 180 Score = 35.8 bits (81), Expect = 2.6, Method: Compositional matrix adjust. Identities = 26/113 (23%), Positives = 48/113 (42%), Gaps = 33/113 (29%) Query: 87 RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY----YHYSYS- 141 + P DV I+ G+++++ L + + + ++S+G CA G H+ + Sbjct: 49 KTLPDHVDVGILEGSISSE--DDLEKAHAFRKHCKILVSLGDCAVNGNVPAMRNHFKLAD 106 Query: 142 --------------------------VVRGCDRIVPVDIYVPGCPPTAEALIY 168 VV+ +V VD++VPGCPP+A+A+ Y Sbjct: 107 VVDRAYRDTVTFQPQTPTQGVPALLAVVKPIHGVVGVDVFVPGCPPSADAIWY 159 >gi|148657643|ref|YP_001277848.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Roseiflexus sp. RS-1] gi|148569753|gb|ABQ91898.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Roseiflexus sp. RS-1] Length = 181 Score = 35.8 bits (81), Expect = 2.6, Method: Compositional matrix adjust. Identities = 37/120 (30%), Positives = 50/120 (41%), Gaps = 41/120 (34%) Query: 90 PRQSDVMIVAGTLTNKMASAL-RRVYDQMPEPRYVISMGSCANGGG-------------Y 135 P + DV +V G + N+ L R+V ++ R VI+ G CA G Sbjct: 49 PDRVDVALVEGAVANEDNLHLIRQVRERT---RLVIAFGDCAVTGNVTALRNVLGDPETL 105 Query: 136 YHYSYS---------------VVRGCDRI------VPVDIYVPGCPPTAE---ALIYGIL 171 H Y V R DR+ VPVD+Y+PGCPP A+ AL+ IL Sbjct: 106 LHTIYVERADTAGQMPLAPGIVPRLLDRVYPVHKVVPVDVYLPGCPPPAQRIRALLEQIL 165 >gi|315504986|ref|YP_004083873.1| hypothetical protein ML5_4220 [Micromonospora sp. L5] gi|315411605|gb|ADU09722.1| hypothetical protein ML5_4220 [Micromonospora sp. L5] Length = 532 Score = 35.8 bits (81), Expect = 2.9, Method: Compositional matrix adjust. Identities = 20/58 (34%), Positives = 36/58 (62%), Gaps = 1/58 (1%) Query: 71 QASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGS 128 +A++ R+ L R G+ SP ++D++ V G +++A L R+++QMP PR I + S Sbjct: 29 RAAVERHVLAR-GWRLALSPAEADILAVCGPPPSQLAEPLHRLWEQMPGPRARIDVES 85 >gi|156741352|ref|YP_001431481.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Roseiflexus castenholzii DSM 13941] gi|156232680|gb|ABU57463.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Roseiflexus castenholzii DSM 13941] Length = 181 Score = 35.8 bits (81), Expect = 3.1, Method: Compositional matrix adjust. Identities = 29/109 (26%), Positives = 44/109 (40%), Gaps = 38/109 (34%) Query: 90 PRQSDVMIVAGTLTNK-MASALRRVYDQMPEPRYVISMGSCANGG-------------GY 135 P DV +V G + N+ +R+V ++ R +I+ G CA G Sbjct: 49 PDHVDVALVEGAVANEDHLHLIRQVRERT---RILIAFGDCAVTGNVTALRNPLGAPEAL 105 Query: 136 YHYSY---SVVRGC------------------DRIVPVDIYVPGCPPTA 163 H Y + + GC ++VPVD+Y+PGCPP A Sbjct: 106 LHTIYIERAEIAGCLPHAPGIVPQLLDKVQPVHKVVPVDVYLPGCPPPA 154 >gi|331664273|ref|ZP_08365179.1| formate hydrogenlyase subunit 7 (FHL subunit 7) (Hydrogenase-3component G) [Escherichia coli TA143] gi|331058204|gb|EGI30185.1| formate hydrogenlyase subunit 7 (FHL subunit 7) (Hydrogenase-3component G) [Escherichia coli TA143] Length = 88 Score = 35.4 bits (80), Expect = 3.5, Method: Compositional matrix adjust. Identities = 13/38 (34%), Positives = 21/38 (55%) Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL 102 C +E+ P +D ERFG SPR +D+++ G + Sbjct: 51 CEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAV 88 >gi|71906620|ref|YP_284207.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Dechloromonas aromatica RCB] gi|71846241|gb|AAZ45737.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Dechloromonas aromatica RCB] Length = 182 Score = 35.4 bits (80), Expect = 3.6, Method: Compositional matrix adjust. Identities = 33/124 (26%), Positives = 52/124 (41%), Gaps = 38/124 (30%) Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY----------------YH 137 D+ I+ G L N + R + + + +I+MG+CA GG YH Sbjct: 56 DIGIIEGGLCNAENVHVLREFRK--NCKILIAMGACAINGGLPAQRNHLPLTTILEEVYH 113 Query: 138 YSYSVVRG-----------------CDRIVPVDIYVPGCPPTAEALIYGIL--LLQKKIR 178 S + G +V VD ++PGCPP+A+A I+ +L LL K Sbjct: 114 TSPGLANGMIPNDPELPLPLNQVHPIHEVVKVDYFMPGCPPSADA-IWKVLTDLLAGKEP 172 Query: 179 RVGN 182 +G+ Sbjct: 173 ELGH 176 >gi|17228259|ref|NP_484807.1| hydrogenase small subunit [Nostoc sp. PCC 7120] gi|17130109|dbj|BAB72721.1| hydrogenase small subunit [Nostoc sp. PCC 7120] Length = 181 Score = 35.4 bits (80), Expect = 3.6, Method: Compositional matrix adjust. Identities = 33/118 (27%), Positives = 48/118 (40%), Gaps = 40/118 (33%) Query: 84 FAPRAS----PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY- 138 F+P A P DV++V G + N+ ++ + + +IS G CA G Sbjct: 39 FSPFADIKEYPEGVDVVLVEGAIANEEHLTTIKIVRE--RSQILISFGDCAVTGNVTALR 96 Query: 139 -----SYSVVRGC----------------------DR------IVPVDIYVPGCPPTA 163 + SV++ C DR IVPVDIY+PGCPP+A Sbjct: 97 NPLGSAESVLQRCYIQAADINPQIPHEPGIVPSLLDRVTPVHSIVPVDIYLPGCPPSA 154 >gi|158319007|ref|YP_001511515.1| NLP/P60 protein [Frankia sp. EAN1pec] gi|158114412|gb|ABW16609.1| NLP/P60 protein [Frankia sp. EAN1pec] Length = 329 Score = 34.7 bits (78), Expect = 5.4, Method: Compositional matrix adjust. Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 3/73 (4%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS---PRQSD 94 F+ + + + W TG W L A + S+PR ++ F PR S P+ D Sbjct: 212 FMRSQIGKPYVWGATGPGAWDCSSLVQAAYRTIGISLPRVTTDQLAFGPRVSGVDPQPGD 271 Query: 95 VMIVAGTLTNKMA 107 ++ + G+ +A Sbjct: 272 LLFIPGSDGTALA 284 >gi|257053168|ref|YP_003131001.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Halorhabdus utahensis DSM 12940] gi|256691931|gb|ACV12268.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Halorhabdus utahensis DSM 12940] Length = 191 Score = 34.7 bits (78), Expect = 5.6, Method: Compositional matrix adjust. Identities = 14/32 (43%), Positives = 19/32 (59%) Query: 144 RGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175 R D + VD+YVPGCPP AE + + L + Sbjct: 146 RPLDEYIDVDVYVPGCPPDAEVMKESLEALAR 177 >gi|212224711|ref|YP_002307947.1| Coenzyme F420 hydrogenase gamma subunit [Thermococcus onnurineus NA1] gi|212009668|gb|ACJ17050.1| Coenzyme F420 hydrogenase gamma subunit [Thermococcus onnurineus NA1] Length = 225 Score = 34.7 bits (78), Expect = 6.2, Method: Compositional matrix adjust. Identities = 20/84 (23%), Positives = 35/84 (41%), Gaps = 9/84 (10%) Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY---------SYSV 142 + DV I+ G L + + + V++ GSCA G + + Sbjct: 48 EYDVAIITGGACMNEPRILEELKEIREKAHTVVAFGSCATFSGILRFCRGGQEPRPDHRN 107 Query: 143 VRGCDRIVPVDIYVPGCPPTAEAL 166 + + ++ VD +PGCPPT + L Sbjct: 108 FQPINSVIKVDYSIPGCPPTPQML 131 >gi|116750141|ref|YP_846828.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Syntrophobacter fumaroxidans MPOB] gi|116699205|gb|ABK18393.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Syntrophobacter fumaroxidans MPOB] Length = 184 Score = 34.3 bits (77), Expect = 7.9, Method: Compositional matrix adjust. Identities = 13/28 (46%), Positives = 20/28 (71%) Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQK 175 +++PVDI++PGCPP E + I+ L K Sbjct: 143 QVIPVDIFLPGCPPDPERIWAAIVALLK 170 >gi|75910855|ref|YP_325151.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Anabaena variabilis ATCC 29413] gi|75704580|gb|ABA24256.1| NAD(P)-dependent nickel-iron dehydrogenase subunit HoxY [Anabaena variabilis ATCC 29413] Length = 181 Score = 34.3 bits (77), Expect = 9.0, Method: Compositional matrix adjust. Identities = 13/15 (86%), Positives = 15/15 (100%) Query: 149 IVPVDIYVPGCPPTA 163 IVPVDIY+PGCPP+A Sbjct: 140 IVPVDIYLPGCPPSA 154 Searching..................................................done Results from round 2 >gi|254780853|ref|YP_003065266.1| NADH dehydrogenase subunit B [Candidatus Liberibacter asiaticus str. psy62] gi|254040530|gb|ACT57326.1| NADH dehydrogenase subunit B [Candidatus Liberibacter asiaticus str. psy62] Length = 185 Score = 294 bits (752), Expect = 4e-78, Method: Composition-based stats. Identities = 185/185 (100%), Positives = 185/185 (100%) Query: 1 MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTF 60 MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTF Sbjct: 1 MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTF 60 Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP Sbjct: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV Sbjct: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 Query: 181 GNVKC 185 GNVKC Sbjct: 181 GNVKC 185 >gi|315122725|ref|YP_004063214.1| NADH dehydrogenase subunit B [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313496127|gb|ADR52726.1| NADH dehydrogenase subunit B [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 185 Score = 271 bits (692), Expect = 4e-71, Method: Composition-based stats. Identities = 158/184 (85%), Positives = 168/184 (91%) Query: 1 MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTF 60 MGLT ++KI+ SS SLEK DF +E+ +KGFLV +DQLVTWARTGSLMWMTF Sbjct: 1 MGLTKFDRKIVVDHSSFSLEKAGMDFPSTDTELMNKGFLVAPIDQLVTWARTGSLMWMTF 60 Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP Sbjct: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD+YVPGCPPTAEALIYGILLLQKKIRR+ Sbjct: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALIYGILLLQKKIRRI 180 Query: 181 GNVK 184 GN+K Sbjct: 181 GNIK 184 >gi|153009751|ref|YP_001370966.1| NADH dehydrogenase subunit B [Ochrobactrum anthropi ATCC 49188] gi|218527999|sp|A6X1N3|NUOB_OCHA4 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|151561639|gb|ABS15137.1| NADH-quinone oxidoreductase, B subunit [Ochrobactrum anthropi ATCC 49188] Length = 193 Score = 269 bits (687), Expect = 2e-70, Method: Composition-based stats. Identities = 144/192 (75%), Positives = 161/192 (83%), Gaps = 8/192 (4%) Query: 1 MGLTTVNQKIISGQS--------SCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWART 52 MGLTT N +++ Q + DA F+ ++SE++ KGF+VTS D L+TWART Sbjct: 1 MGLTTANTTLVAPQPKGILDPRTGKPVGSDDAFFNDLNSELSDKGFIVTSADALITWART 60 Query: 53 GSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRR 112 GSLMWMTFGLACCAVEMM SMPRYD ERFG APRASPRQSDVMIVAGTLTNKMA ALR+ Sbjct: 61 GSLMWMTFGLACCAVEMMHISMPRYDAERFGIAPRASPRQSDVMIVAGTLTNKMAPALRK 120 Query: 113 VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILL 172 VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR+VPVDIYVPGCPPTAEAL+YGIL+ Sbjct: 121 VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRVVPVDIYVPGCPPTAEALLYGILM 180 Query: 173 LQKKIRRVGNVK 184 LQKKIRR G ++ Sbjct: 181 LQKKIRRTGTIE 192 >gi|239831687|ref|ZP_04680016.1| NADH-quinone oxidoreductase, B subunit [Ochrobactrum intermedium LMG 3301] gi|239823954|gb|EEQ95522.1| NADH-quinone oxidoreductase, B subunit [Ochrobactrum intermedium LMG 3301] Length = 193 Score = 268 bits (686), Expect = 2e-70, Method: Composition-based stats. Identities = 143/192 (74%), Positives = 161/192 (83%), Gaps = 8/192 (4%) Query: 1 MGLTTVNQKIISGQS--------SCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWART 52 MGLT+ N +++ Q + DA F+ ++SE++ KGF+VTS D L+TWART Sbjct: 1 MGLTSANTTLVAPQPKGILDPRTGKPVGSDDAFFNDLNSELSDKGFIVTSADALITWART 60 Query: 53 GSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRR 112 GSLMWMTFGLACCAVEMM SMPRYD ERFG APRASPRQSDVMIVAGTLTNKMA ALR+ Sbjct: 61 GSLMWMTFGLACCAVEMMHISMPRYDAERFGIAPRASPRQSDVMIVAGTLTNKMAPALRK 120 Query: 113 VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILL 172 VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR+VPVDIYVPGCPPTAEAL+YGIL+ Sbjct: 121 VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRVVPVDIYVPGCPPTAEALLYGILM 180 Query: 173 LQKKIRRVGNVK 184 LQKKIRR G ++ Sbjct: 181 LQKKIRRTGTIE 192 >gi|260545498|ref|ZP_05821239.1| NADH-quinone oxidoreductase subunit C/D [Brucella abortus NCTC 8038] gi|297248157|ref|ZP_06931875.1| NADH dehydrogenase I subunit B [Brucella abortus bv. 5 str. B3196] gi|260096905|gb|EEW80780.1| NADH-quinone oxidoreductase subunit C/D [Brucella abortus NCTC 8038] gi|297175326|gb|EFH34673.1| NADH dehydrogenase I subunit B [Brucella abortus bv. 5 str. B3196] Length = 200 Score = 267 bits (684), Expect = 4e-70, Method: Composition-based stats. Identities = 144/192 (75%), Positives = 160/192 (83%), Gaps = 8/192 (4%) Query: 1 MGLTTVNQKIISGQSSCSLEK--------VDADFSRISSEITHKGFLVTSVDQLVTWART 52 MGLT N +++ Q L+ DA F+ ++ E++ KGF+VTS D L+TWART Sbjct: 8 MGLTGTNTTLVAPQPKGILDPRTGKTVGSDDAFFNDLNGELSDKGFIVTSADALITWART 67 Query: 53 GSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRR 112 GSLMWMTFGLACCAVEMM SMPRYD ERFG APRASPRQSDVMIVAGTLTNKMA ALR+ Sbjct: 68 GSLMWMTFGLACCAVEMMHISMPRYDAERFGIAPRASPRQSDVMIVAGTLTNKMAPALRK 127 Query: 113 VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILL 172 VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR+VPVDIYVPGCPPTAEAL+YGILL Sbjct: 128 VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRVVPVDIYVPGCPPTAEALLYGILL 187 Query: 173 LQKKIRRVGNVK 184 LQKKIRR G ++ Sbjct: 188 LQKKIRRTGTIE 199 >gi|62289752|ref|YP_221545.1| NADH dehydrogenase subunit B [Brucella abortus bv. 1 str. 9-941] gi|82699680|ref|YP_414254.1| NADH dehydrogenase subunit B [Brucella melitensis biovar Abortus 2308] gi|189023997|ref|YP_001934765.1| NADH dehydrogenase subunit B [Brucella abortus S19] gi|237815239|ref|ZP_04594237.1| NADH-quinone oxidoreductase, B subunit [Brucella abortus str. 2308 A] gi|254689059|ref|ZP_05152313.1| NADH dehydrogenase subunit B [Brucella abortus bv. 6 str. 870] gi|254697193|ref|ZP_05159021.1| NADH dehydrogenase subunit B [Brucella abortus bv. 2 str. 86/8/59] gi|254730089|ref|ZP_05188667.1| NADH dehydrogenase subunit B [Brucella abortus bv. 4 str. 292] gi|256257308|ref|ZP_05462844.1| NADH dehydrogenase subunit B [Brucella abortus bv. 9 str. C68] gi|260754557|ref|ZP_05866905.1| NADH-quinone oxidoreductase [Brucella abortus bv. 6 str. 870] gi|260757778|ref|ZP_05870126.1| NADH-quinone oxidoreductase [Brucella abortus bv. 4 str. 292] gi|260761603|ref|ZP_05873946.1| NADH-quinone oxidoreductase [Brucella abortus bv. 2 str. 86/8/59] gi|260883584|ref|ZP_05895198.1| NADH-quinone oxidoreductase subunit B [Brucella abortus bv. 9 str. C68] gi|75496975|sp|Q57DV0|NUOB_BRUAB RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|123546615|sp|Q2YNC8|NUOB_BRUA2 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|218527975|sp|B2S544|NUOB_BRUA1 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|62195884|gb|AAX74184.1| NuoB, NADH dehydrogenase I, B subunit [Brucella abortus bv. 1 str. 9-941] gi|82615781|emb|CAJ10779.1| NADH ubiquinone oxidoreductase domain, 20 kDa subunit:NADH dehydrogenase (ubiquinone), 20 kDa subunit [Brucella melitensis biovar Abortus 2308] gi|189019569|gb|ACD72291.1| NADH dehydrogenase beta subunit [Brucella abortus S19] gi|237790076|gb|EEP64286.1| NADH-quinone oxidoreductase, B subunit [Brucella abortus str. 2308 A] gi|260668096|gb|EEX55036.1| NADH-quinone oxidoreductase [Brucella abortus bv. 4 str. 292] gi|260672035|gb|EEX58856.1| NADH-quinone oxidoreductase [Brucella abortus bv. 2 str. 86/8/59] gi|260674665|gb|EEX61486.1| NADH-quinone oxidoreductase [Brucella abortus bv. 6 str. 870] gi|260873112|gb|EEX80181.1| NADH-quinone oxidoreductase subunit B [Brucella abortus bv. 9 str. C68] Length = 193 Score = 267 bits (684), Expect = 4e-70, Method: Composition-based stats. Identities = 144/192 (75%), Positives = 160/192 (83%), Gaps = 8/192 (4%) Query: 1 MGLTTVNQKIISGQSSCSLEK--------VDADFSRISSEITHKGFLVTSVDQLVTWART 52 MGLT N +++ Q L+ DA F+ ++ E++ KGF+VTS D L+TWART Sbjct: 1 MGLTGTNTTLVAPQPKGILDPRTGKTVGSDDAFFNDLNGELSDKGFIVTSADALITWART 60 Query: 53 GSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRR 112 GSLMWMTFGLACCAVEMM SMPRYD ERFG APRASPRQSDVMIVAGTLTNKMA ALR+ Sbjct: 61 GSLMWMTFGLACCAVEMMHISMPRYDAERFGIAPRASPRQSDVMIVAGTLTNKMAPALRK 120 Query: 113 VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILL 172 VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR+VPVDIYVPGCPPTAEAL+YGILL Sbjct: 121 VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRVVPVDIYVPGCPPTAEALLYGILL 180 Query: 173 LQKKIRRVGNVK 184 LQKKIRR G ++ Sbjct: 181 LQKKIRRTGTIE 192 >gi|17987440|ref|NP_540074.1| NADH dehydrogenase subunit B [Brucella melitensis bv. 1 str. 16M] gi|260563836|ref|ZP_05834322.1| NADH-quinone oxidoreductase subunit C/D [Brucella melitensis bv. 1 str. 16M] gi|260566633|ref|ZP_05837103.1| NADH-quinone oxidoreductase subunit C/D [Brucella suis bv. 4 str. 40] gi|17983133|gb|AAL52338.1| NADH-quinone oxidoreductase chain b [Brucella melitensis bv. 1 str. 16M] gi|260153852|gb|EEW88944.1| NADH-quinone oxidoreductase subunit C/D [Brucella melitensis bv. 1 str. 16M] gi|260156151|gb|EEW91231.1| NADH-quinone oxidoreductase subunit C/D [Brucella suis bv. 4 str. 40] Length = 200 Score = 267 bits (683), Expect = 5e-70, Method: Composition-based stats. Identities = 143/192 (74%), Positives = 159/192 (82%), Gaps = 8/192 (4%) Query: 1 MGLTTVNQKIISGQS--------SCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWART 52 MGLT N +++ Q + DA F+ ++ E++ KGF+VTS D L+TWART Sbjct: 8 MGLTGTNTTLVAPQPKGILDPRTGKPVGSDDAFFNDLNGELSDKGFIVTSADALITWART 67 Query: 53 GSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRR 112 GSLMWMTFGLACCAVEMM SMPRYD ERFG APRASPRQSDVMIVAGTLTNKMA ALR+ Sbjct: 68 GSLMWMTFGLACCAVEMMHISMPRYDAERFGIAPRASPRQSDVMIVAGTLTNKMAPALRK 127 Query: 113 VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILL 172 VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR+VPVDIYVPGCPPTAEAL+YGILL Sbjct: 128 VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRVVPVDIYVPGCPPTAEALLYGILL 187 Query: 173 LQKKIRRVGNVK 184 LQKKIRR G ++ Sbjct: 188 LQKKIRRTGTIE 199 >gi|23501690|ref|NP_697817.1| NADH dehydrogenase subunit B [Brucella suis 1330] gi|148559527|ref|YP_001258781.1| NADH dehydrogenase subunit B [Brucella ovis ATCC 25840] gi|161618767|ref|YP_001592654.1| NADH dehydrogenase subunit B [Brucella canis ATCC 23365] gi|163843076|ref|YP_001627480.1| NADH dehydrogenase subunit B [Brucella suis ATCC 23445] gi|225627300|ref|ZP_03785337.1| NADH-quinone oxidoreductase, B subunit [Brucella ceti str. Cudo] gi|225852319|ref|YP_002732552.1| NADH dehydrogenase subunit B [Brucella melitensis ATCC 23457] gi|254693541|ref|ZP_05155369.1| NADH dehydrogenase subunit B [Brucella abortus bv. 3 str. Tulya] gi|254701571|ref|ZP_05163399.1| NADH dehydrogenase subunit B [Brucella suis bv. 5 str. 513] gi|254704118|ref|ZP_05165946.1| NADH dehydrogenase subunit B [Brucella suis bv. 3 str. 686] gi|254706982|ref|ZP_05168810.1| NADH dehydrogenase subunit B [Brucella pinnipedialis M163/99/10] gi|254709911|ref|ZP_05171722.1| NADH dehydrogenase subunit B [Brucella pinnipedialis B2/94] gi|254713912|ref|ZP_05175723.1| NADH dehydrogenase subunit B [Brucella ceti M644/93/1] gi|254717030|ref|ZP_05178841.1| NADH dehydrogenase subunit B [Brucella ceti M13/05/1] gi|254718912|ref|ZP_05180723.1| NADH dehydrogenase subunit B [Brucella sp. 83/13] gi|256031404|ref|ZP_05445018.1| NADH dehydrogenase subunit B [Brucella pinnipedialis M292/94/1] gi|256044482|ref|ZP_05447386.1| NADH dehydrogenase subunit B [Brucella melitensis bv. 1 str. Rev.1] gi|256060915|ref|ZP_05451073.1| NADH dehydrogenase subunit B [Brucella neotomae 5K33] gi|256113333|ref|ZP_05454195.1| NADH dehydrogenase subunit B [Brucella melitensis bv. 3 str. Ether] gi|256159525|ref|ZP_05457293.1| NADH dehydrogenase subunit B [Brucella ceti M490/95/1] gi|256254812|ref|ZP_05460348.1| NADH dehydrogenase subunit B [Brucella ceti B1/94] gi|256264182|ref|ZP_05466714.1| NADH dehydrogenase beta subunit [Brucella melitensis bv. 2 str. 63/9] gi|256369235|ref|YP_003106743.1| NADH dehydrogenase beta subunit [Brucella microti CCM 4915] gi|260168538|ref|ZP_05755349.1| NADH dehydrogenase subunit B [Brucella sp. F5/99] gi|261213806|ref|ZP_05928087.1| NADH-quinone oxidoreductase [Brucella abortus bv. 3 str. Tulya] gi|261218837|ref|ZP_05933118.1| NADH-quinone oxidoreductase subunit B [Brucella ceti M13/05/1] gi|261221993|ref|ZP_05936274.1| NADH-quinone oxidoreductase subunit B [Brucella ceti B1/94] gi|261314445|ref|ZP_05953642.1| NADH-quinone oxidoreductase subunit B [Brucella pinnipedialis M163/99/10] gi|261317457|ref|ZP_05956654.1| NADH-quinone oxidoreductase subunit B [Brucella pinnipedialis B2/94] gi|261321664|ref|ZP_05960861.1| NADH-quinone oxidoreductase subunit B [Brucella ceti M644/93/1] gi|261324915|ref|ZP_05964112.1| NADH-quinone oxidoreductase subunit B [Brucella neotomae 5K33] gi|261752124|ref|ZP_05995833.1| NADH-quinone oxidoreductase subunit B [Brucella suis bv. 5 str. 513] gi|261754784|ref|ZP_05998493.1| NADH-quinone oxidoreductase subunit B [Brucella suis bv. 3 str. 686] gi|261758011|ref|ZP_06001720.1| NADH dehydrogenase subunit B [Brucella sp. F5/99] gi|265983899|ref|ZP_06096634.1| NADH-quinone oxidoreductase subunit B [Brucella sp. 83/13] gi|265988493|ref|ZP_06101050.1| NADH-quinone oxidoreductase subunit B [Brucella pinnipedialis M292/94/1] gi|265990906|ref|ZP_06103463.1| NADH-quinone oxidoreductase subunit B [Brucella melitensis bv. 1 str. Rev.1] gi|265994743|ref|ZP_06107300.1| NADH-quinone oxidoreductase subunit B [Brucella melitensis bv. 3 str. Ether] gi|265997957|ref|ZP_06110514.1| NADH-quinone oxidoreductase subunit B [Brucella ceti M490/95/1] gi|294852160|ref|ZP_06792833.1| NADH-quinone oxidoreductase subunit B [Brucella sp. NVSL 07-0026] gi|306838240|ref|ZP_07471092.1| NADH-quinone oxidoreductase, B subunit [Brucella sp. NF 2653] gi|306841959|ref|ZP_07474636.1| NADH-quinone oxidoreductase, B subunit [Brucella sp. BO2] gi|306843740|ref|ZP_07476339.1| NADH-quinone oxidoreductase, B subunit [Brucella sp. BO1] gi|81752805|sp|Q8G1B6|NUOB_BRUSU RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|218527976|sp|A9MAI0|NUOB_BRUC2 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|218527977|sp|A5VPY4|NUOB_BRUO2 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|218527978|sp|B0CLD0|NUOB_BRUSI RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|218528072|sp|Q8YGK1|NUOB_BRUME RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|254767790|sp|C0RIE0|NUOB_BRUMB RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|23347612|gb|AAN29732.1| NADH dehydrogenase I, B subunit [Brucella suis 1330] gi|148370784|gb|ABQ60763.1| NADH dehydrogenase I, B subunit [Brucella ovis ATCC 25840] gi|161335578|gb|ABX61883.1| NADH-quinone oxidoreductase, B subunit [Brucella canis ATCC 23365] gi|163673799|gb|ABY37910.1| NADH-quinone oxidoreductase, B subunit [Brucella suis ATCC 23445] gi|225617305|gb|EEH14350.1| NADH-quinone oxidoreductase, B subunit [Brucella ceti str. Cudo] gi|225640684|gb|ACO00598.1| NADH-quinone oxidoreductase, B subunit [Brucella melitensis ATCC 23457] gi|255999395|gb|ACU47794.1| NADH dehydrogenase beta subunit [Brucella microti CCM 4915] gi|260915413|gb|EEX82274.1| NADH-quinone oxidoreductase [Brucella abortus bv. 3 str. Tulya] gi|260920577|gb|EEX87230.1| NADH-quinone oxidoreductase subunit B [Brucella ceti B1/94] gi|260923926|gb|EEX90494.1| NADH-quinone oxidoreductase subunit B [Brucella ceti M13/05/1] gi|261294354|gb|EEX97850.1| NADH-quinone oxidoreductase subunit B [Brucella ceti M644/93/1] gi|261296680|gb|EEY00177.1| NADH-quinone oxidoreductase subunit B [Brucella pinnipedialis B2/94] gi|261300895|gb|EEY04392.1| NADH-quinone oxidoreductase subunit B [Brucella neotomae 5K33] gi|261303471|gb|EEY06968.1| NADH-quinone oxidoreductase subunit B [Brucella pinnipedialis M163/99/10] gi|261737995|gb|EEY25991.1| NADH dehydrogenase subunit B [Brucella sp. F5/99] gi|261741877|gb|EEY29803.1| NADH-quinone oxidoreductase subunit B [Brucella suis bv. 5 str. 513] gi|261744537|gb|EEY32463.1| NADH-quinone oxidoreductase subunit B [Brucella suis bv. 3 str. 686] gi|262552425|gb|EEZ08415.1| NADH-quinone oxidoreductase subunit B [Brucella ceti M490/95/1] gi|262765856|gb|EEZ11645.1| NADH-quinone oxidoreductase subunit B [Brucella melitensis bv. 3 str. Ether] gi|263001690|gb|EEZ14265.1| NADH-quinone oxidoreductase subunit B [Brucella melitensis bv. 1 str. Rev.1] gi|263094400|gb|EEZ18245.1| NADH dehydrogenase beta subunit [Brucella melitensis bv. 2 str. 63/9] gi|264660690|gb|EEZ30951.1| NADH-quinone oxidoreductase subunit B [Brucella pinnipedialis M292/94/1] gi|264662491|gb|EEZ32752.1| NADH-quinone oxidoreductase subunit B [Brucella sp. 83/13] gi|294820749|gb|EFG37748.1| NADH-quinone oxidoreductase subunit B [Brucella sp. NVSL 07-0026] gi|306275931|gb|EFM57644.1| NADH-quinone oxidoreductase, B subunit [Brucella sp. BO1] gi|306287950|gb|EFM59361.1| NADH-quinone oxidoreductase, B subunit [Brucella sp. BO2] gi|306406684|gb|EFM62911.1| NADH-quinone oxidoreductase, B subunit [Brucella sp. NF 2653] gi|326408826|gb|ADZ65891.1| NADH dehydrogenase subunit B [Brucella melitensis M28] Length = 193 Score = 267 bits (682), Expect = 6e-70, Method: Composition-based stats. Identities = 143/192 (74%), Positives = 159/192 (82%), Gaps = 8/192 (4%) Query: 1 MGLTTVNQKIISGQS--------SCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWART 52 MGLT N +++ Q + DA F+ ++ E++ KGF+VTS D L+TWART Sbjct: 1 MGLTGTNTTLVAPQPKGILDPRTGKPVGSDDAFFNDLNGELSDKGFIVTSADALITWART 60 Query: 53 GSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRR 112 GSLMWMTFGLACCAVEMM SMPRYD ERFG APRASPRQSDVMIVAGTLTNKMA ALR+ Sbjct: 61 GSLMWMTFGLACCAVEMMHISMPRYDAERFGIAPRASPRQSDVMIVAGTLTNKMAPALRK 120 Query: 113 VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILL 172 VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR+VPVDIYVPGCPPTAEAL+YGILL Sbjct: 121 VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRVVPVDIYVPGCPPTAEALLYGILL 180 Query: 173 LQKKIRRVGNVK 184 LQKKIRR G ++ Sbjct: 181 LQKKIRRTGTIE 192 >gi|227821618|ref|YP_002825588.1| NADH dehydrogenase subunit B [Sinorhizobium fredii NGR234] gi|227340617|gb|ACP24835.1| NADH dehydrogenase I chain B [Sinorhizobium fredii NGR234] Length = 192 Score = 266 bits (679), Expect = 1e-69, Method: Composition-based stats. Identities = 141/182 (77%), Positives = 156/182 (85%) Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62 + + II + + DA F I++E+ KGFLVTS D+L+ WARTGSLMWMTFGL Sbjct: 10 VAPQPKGIIDPATGKPIGSNDAFFGEINNELADKGFLVTSTDELINWARTGSLMWMTFGL 69 Query: 63 ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122 ACCAVEMMQ SMPRYD ERFGFAPRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRY Sbjct: 70 ACCAVEMMQMSMPRYDAERFGFAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRY 129 Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182 VISMGSCANGGGYYHYSYSVVRGCDR+VPVDIYVPGCPPTAEAL+YG+LLLQKKIRR G Sbjct: 130 VISMGSCANGGGYYHYSYSVVRGCDRVVPVDIYVPGCPPTAEALLYGVLLLQKKIRRTGT 189 Query: 183 VK 184 ++ Sbjct: 190 IE 191 >gi|86357237|ref|YP_469129.1| NADH dehydrogenase subunit B [Rhizobium etli CFN 42] gi|218673424|ref|ZP_03523093.1| NADH dehydrogenase subunit B [Rhizobium etli GR56] gi|123512314|sp|Q2K9T4|NUOB1_RHIEC RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName: Full=NADH dehydrogenase I subunit B 1; AltName: Full=NDH-1 subunit B 1 gi|86281339|gb|ABC90402.1| NADH-ubiquinone oxidoreductase chain B protein [Rhizobium etli CFN 42] Length = 194 Score = 266 bits (679), Expect = 2e-69, Method: Composition-based stats. Identities = 144/193 (74%), Positives = 162/193 (83%), Gaps = 9/193 (4%) Query: 1 MGLTTVN---------QKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWAR 51 MG+T V+ + II + + DA F I++E+ KGFLVTS D+L+ WAR Sbjct: 1 MGVTPVSNQPLVAQQPKGIIDPSTGKPIGSNDAFFGEINNELADKGFLVTSTDELINWAR 60 Query: 52 TGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALR 111 TGSLMWMTFGLACCAVEMMQ SMPRYD+ERFGFAPRASPRQSDVMIVAGTLTNKMA ALR Sbjct: 61 TGSLMWMTFGLACCAVEMMQLSMPRYDVERFGFAPRASPRQSDVMIVAGTLTNKMAPALR 120 Query: 112 RVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171 +VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR+VP+DIYVPGCPPTAEAL+YG+L Sbjct: 121 KVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRVVPIDIYVPGCPPTAEALLYGVL 180 Query: 172 LLQKKIRRVGNVK 184 LLQKKIRR G ++ Sbjct: 181 LLQKKIRRTGTIE 193 >gi|190891286|ref|YP_001977828.1| NADH-ubiquinone oxidoreductase, chain B [Rhizobium etli CIAT 652] gi|238065013|sp|B3PVZ8|NUOB1_RHIE6 RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName: Full=NADH dehydrogenase I subunit B 1; AltName: Full=NDH-1 subunit B 1 gi|190696565|gb|ACE90650.1| NADH-ubiquinone oxidoreductase protein, chain B [Rhizobium etli CIAT 652] Length = 194 Score = 265 bits (678), Expect = 2e-69, Method: Composition-based stats. Identities = 144/193 (74%), Positives = 162/193 (83%), Gaps = 9/193 (4%) Query: 1 MGLTTVN---------QKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWAR 51 MG+T V+ + II + + DA F I++E+ KGFLVTS D+L+ WAR Sbjct: 1 MGVTPVSNEPLVAQQPKGIIDPSTGKPIGSNDAFFGEINNELADKGFLVTSTDELINWAR 60 Query: 52 TGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALR 111 TGSLMWMTFGLACCAVEMMQ SMPRYD+ERFGFAPRASPRQSDVMIVAGTLTNKMA ALR Sbjct: 61 TGSLMWMTFGLACCAVEMMQLSMPRYDVERFGFAPRASPRQSDVMIVAGTLTNKMAPALR 120 Query: 112 RVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171 +VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR+VP+DIYVPGCPPTAEAL+YG+L Sbjct: 121 KVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRVVPIDIYVPGCPPTAEALLYGVL 180 Query: 172 LLQKKIRRVGNVK 184 LLQKKIRR G ++ Sbjct: 181 LLQKKIRRTGTIE 193 >gi|327188488|gb|EGE55702.1| NADH dehydrogenase subunit B [Rhizobium etli CNPAF512] Length = 201 Score = 265 bits (678), Expect = 2e-69, Method: Composition-based stats. Identities = 144/193 (74%), Positives = 162/193 (83%), Gaps = 9/193 (4%) Query: 1 MGLTTVN---------QKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWAR 51 MG+T V+ + II + + DA F I++E+ KGFLVTS D+L+ WAR Sbjct: 8 MGVTPVSNQPLVAQQPKGIIDPSTGKPIGSNDAFFGEINNELADKGFLVTSTDELINWAR 67 Query: 52 TGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALR 111 TGSLMWMTFGLACCAVEMMQ SMPRYD+ERFGFAPRASPRQSDVMIVAGTLTNKMA ALR Sbjct: 68 TGSLMWMTFGLACCAVEMMQLSMPRYDVERFGFAPRASPRQSDVMIVAGTLTNKMAPALR 127 Query: 112 RVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171 +VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR+VP+DIYVPGCPPTAEAL+YG+L Sbjct: 128 KVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRVVPIDIYVPGCPPTAEALLYGVL 187 Query: 172 LLQKKIRRVGNVK 184 LLQKKIRR G ++ Sbjct: 188 LLQKKIRRTGTIE 200 >gi|15965018|ref|NP_385371.1| NADH dehydrogenase subunit B [Sinorhizobium meliloti 1021] gi|307301090|ref|ZP_07580859.1| NADH-quinone oxidoreductase, B subunit [Sinorhizobium meliloti BL225C] gi|307317824|ref|ZP_07597262.1| NADH-quinone oxidoreductase, B subunit [Sinorhizobium meliloti AK83] gi|7387950|sp|O68853|NUOB1_RHIME RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName: Full=NADH dehydrogenase I subunit B 1; AltName: Full=NDH-1 subunit B 1 gi|5650735|emb|CAB51621.1| nuoB1 [Sinorhizobium meliloti] gi|15074197|emb|CAC45844.1| NADH-ubiqionone oxidoreductase subunit K transmembrane protein [Sinorhizobium meliloti 1021] gi|306896586|gb|EFN27334.1| NADH-quinone oxidoreductase, B subunit [Sinorhizobium meliloti AK83] gi|306904045|gb|EFN34631.1| NADH-quinone oxidoreductase, B subunit [Sinorhizobium meliloti BL225C] Length = 192 Score = 265 bits (678), Expect = 2e-69, Method: Composition-based stats. Identities = 140/182 (76%), Positives = 156/182 (85%) Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62 + + I+ + + DA F I++E+ KGFLVTS D+L+ WARTGSLMWMTFGL Sbjct: 10 VAPQPKGILDPATGKPIGSNDAFFGEINNELADKGFLVTSTDELINWARTGSLMWMTFGL 69 Query: 63 ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122 ACCAVEMMQ SMPRYD ERFGFAPRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRY Sbjct: 70 ACCAVEMMQMSMPRYDAERFGFAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRY 129 Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182 VISMGSCANGGGYYHYSYSVVRGCDR+VPVDIYVPGCPPTAEAL+YG+LLLQKKIRR G Sbjct: 130 VISMGSCANGGGYYHYSYSVVRGCDRVVPVDIYVPGCPPTAEALLYGVLLLQKKIRRTGT 189 Query: 183 VK 184 ++ Sbjct: 190 IE 191 >gi|326538542|gb|ADZ86757.1| NADH-quinone oxidoreductase, B subunit [Brucella melitensis M5-90] Length = 191 Score = 264 bits (676), Expect = 3e-69, Method: Composition-based stats. Identities = 138/182 (75%), Positives = 156/182 (85%) Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62 + + I+ ++ + DA F+ ++ E++ KGF+VTS D L+TWARTGSLMWMTFGL Sbjct: 9 VAPQPKGILDPRTGKPVGSDDAFFNDLNGELSDKGFIVTSADALITWARTGSLMWMTFGL 68 Query: 63 ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122 ACCAVEMM SMPRYD ERFG APRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRY Sbjct: 69 ACCAVEMMHISMPRYDAERFGIAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRY 128 Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182 VISMGSCANGGGYYHYSYSVVRGCDR+VPVDIYVPGCPPTAEAL+YGILLLQKKIRR G Sbjct: 129 VISMGSCANGGGYYHYSYSVVRGCDRVVPVDIYVPGCPPTAEALLYGILLLQKKIRRTGT 188 Query: 183 VK 184 ++ Sbjct: 189 IE 190 >gi|217979050|ref|YP_002363197.1| NADH-quinone oxidoreductase, B subunit [Methylocella silvestris BL2] gi|238065173|sp|B8EIL8|NUOB_METSB RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|217504426|gb|ACK51835.1| NADH-quinone oxidoreductase, B subunit [Methylocella silvestris BL2] Length = 187 Score = 264 bits (675), Expect = 4e-69, Method: Composition-based stats. Identities = 144/186 (77%), Positives = 160/186 (86%), Gaps = 2/186 (1%) Query: 1 MGLTTVNQK--IISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWM 58 MGLT Q+ +I+ + L D F I+ ++ KGFLVTS D+L+ WARTGSLMWM Sbjct: 1 MGLTPAPQEGLVINPATDRPLAANDPYFLSINDKLADKGFLVTSTDELINWARTGSLMWM 60 Query: 59 TFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMP 118 TFGLACCAVEMMQASMPRYD+ERFGFAPR SPRQSDVMIVAGTLTNKMA ALR+VYDQMP Sbjct: 61 TFGLACCAVEMMQASMPRYDVERFGFAPRGSPRQSDVMIVAGTLTNKMAPALRKVYDQMP 120 Query: 119 EPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 EPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP+AEAL+YGILLLQ+KIR Sbjct: 121 EPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPSAEALLYGILLLQRKIR 180 Query: 179 RVGNVK 184 R G ++ Sbjct: 181 RTGTIE 186 >gi|209548863|ref|YP_002280780.1| NADH dehydrogenase subunit B [Rhizobium leguminosarum bv. trifolii WSM2304] gi|238065201|sp|B5ZYL3|NUOB_RHILW RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|209534619|gb|ACI54554.1| NADH-quinone oxidoreductase, B subunit [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 194 Score = 264 bits (675), Expect = 5e-69, Method: Composition-based stats. Identities = 141/182 (77%), Positives = 157/182 (86%) Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62 + + II + + DA F I++E+ KGFLVTS D+L+ WARTGSLMWMTFGL Sbjct: 12 VAQQPKGIIDPSTGKPIGSNDAFFGEINNELADKGFLVTSTDELINWARTGSLMWMTFGL 71 Query: 63 ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122 ACCAVEMMQ SMPRYD+ERFGFAPRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRY Sbjct: 72 ACCAVEMMQLSMPRYDVERFGFAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRY 131 Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182 VISMGSCANGGGYYHYSYSVVRGCDRIVP+DIYVPGCPPTAEAL+YG+LLLQKKIRR G Sbjct: 132 VISMGSCANGGGYYHYSYSVVRGCDRIVPIDIYVPGCPPTAEALLYGVLLLQKKIRRTGT 191 Query: 183 VK 184 ++ Sbjct: 192 IE 193 >gi|163759542|ref|ZP_02166627.1| NADH dehydrogenase beta subunit [Hoeflea phototrophica DFL-43] gi|162283139|gb|EDQ33425.1| NADH dehydrogenase beta subunit [Hoeflea phototrophica DFL-43] Length = 191 Score = 264 bits (674), Expect = 5e-69, Method: Composition-based stats. Identities = 138/182 (75%), Positives = 157/182 (86%) Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62 + + II + + + DA F +++E+ KGFLVTS D+L+ W+RTGSLMWMTFGL Sbjct: 9 VAPAAKGIIDPNTGKPVGQDDAFFGEVNNELADKGFLVTSTDELINWSRTGSLMWMTFGL 68 Query: 63 ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122 ACCAVEMMQ SMPRYD ERFGFAPRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRY Sbjct: 69 ACCAVEMMQMSMPRYDAERFGFAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRY 128 Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182 VISMGSCANGGGYYHYSYSVVRGCDR+VPVDIYVPGCPPTAEAL+YG+LLLQKK+RR G Sbjct: 129 VISMGSCANGGGYYHYSYSVVRGCDRVVPVDIYVPGCPPTAEALLYGVLLLQKKMRRTGT 188 Query: 183 VK 184 ++ Sbjct: 189 IE 190 >gi|300023456|ref|YP_003756067.1| NADH-quinone oxidoreductase subunit beta [Hyphomicrobium denitrificans ATCC 51888] gi|299525277|gb|ADJ23746.1| NADH-quinone oxidoreductase, B subunit [Hyphomicrobium denitrificans ATCC 51888] Length = 198 Score = 264 bits (674), Expect = 5e-69, Method: Composition-based stats. Identities = 145/197 (73%), Positives = 162/197 (82%), Gaps = 13/197 (6%) Query: 1 MGLTTVNQKII-------------SGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLV 47 MG+ N I SG ++ + D F+ IS+E+ KGFLVT+VD L+ Sbjct: 1 MGVIRTNDGQIIFDRALDKAREGVSGAATSIIRPDDQFFTGISNELADKGFLVTTVDDLI 60 Query: 48 TWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMA 107 WARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMA Sbjct: 61 NWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMA 120 Query: 108 SALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALI 167 ALR+VYDQMPEPRYVISMGSCANGGGYYHYSY+VVRGCDR+VPVD+YVPGCPPTAEAL+ Sbjct: 121 PALRKVYDQMPEPRYVISMGSCANGGGYYHYSYAVVRGCDRVVPVDVYVPGCPPTAEALV 180 Query: 168 YGILLLQKKIRRVGNVK 184 YGILLLQ+KIRR G ++ Sbjct: 181 YGILLLQRKIRRTGTIE 197 >gi|218457950|ref|ZP_03498041.1| NADH dehydrogenase subunit B [Rhizobium etli Kim 5] Length = 185 Score = 263 bits (673), Expect = 7e-69, Method: Composition-based stats. Identities = 140/179 (78%), Positives = 156/179 (87%) Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62 + ++ II + + DA F I++E+ KGFLVTS D+L+ WARTGSLMWMTFGL Sbjct: 7 VARQSKGIIDPSTGKPIGSNDAFFGEINNELADKGFLVTSTDELINWARTGSLMWMTFGL 66 Query: 63 ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122 ACCAVEMMQ SMPRYD+ERFGFAPRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRY Sbjct: 67 ACCAVEMMQLSMPRYDVERFGFAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRY 126 Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181 VISMGSCANGGGYYHYSYSVVRGCDR+VP+DIYVPGCPPTAEAL+YG+LLLQKKIRR G Sbjct: 127 VISMGSCANGGGYYHYSYSVVRGCDRVVPIDIYVPGCPPTAEALLYGVLLLQKKIRRTG 185 >gi|118590038|ref|ZP_01547442.1| NADH dehydrogenase subunit B [Stappia aggregata IAM 12614] gi|118437535|gb|EAV44172.1| NADH dehydrogenase subunit B [Stappia aggregata IAM 12614] Length = 192 Score = 263 bits (673), Expect = 7e-69, Method: Composition-based stats. Identities = 145/191 (75%), Positives = 159/191 (83%), Gaps = 7/191 (3%) Query: 1 MGLTTVN-------QKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTG 53 MGLTT Q II + + DA F +++E+ KGFLVTS D L+ WARTG Sbjct: 1 MGLTTTEPLVAPQPQGIIDPNTGKPVGADDAFFLEVNNELADKGFLVTSTDNLIQWARTG 60 Query: 54 SLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRV 113 SLMWMTFGLACCAVEMMQ SMPRYD ERFGFAPRASPRQSDVMIVAGTLTNKMA ALR+V Sbjct: 61 SLMWMTFGLACCAVEMMQMSMPRYDAERFGFAPRASPRQSDVMIVAGTLTNKMAPALRKV 120 Query: 114 YDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLL 173 YDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR+VPVDIYVPGCPPTAEAL+YG+L+L Sbjct: 121 YDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRVVPVDIYVPGCPPTAEALLYGVLML 180 Query: 174 QKKIRRVGNVK 184 QKKIRR G ++ Sbjct: 181 QKKIRRTGTIE 191 >gi|144899466|emb|CAM76330.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit [Magnetospirillum gryphiswaldense MSR-1] Length = 186 Score = 263 bits (672), Expect = 8e-69, Method: Composition-based stats. Identities = 126/186 (67%), Positives = 149/186 (80%), Gaps = 5/186 (2%) Query: 1 MGLTTVNQKIISGQSSCSLEK---VDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMW 57 MG+T N +++ + L + D+ ++ E+ KGF++ +VD+LV WARTGSL Sbjct: 1 MGVT--NSGLVTPAHAAPLPQGAAQDSVLKLVTDELEDKGFVLANVDKLVNWARTGSLWP 58 Query: 58 MTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQM 117 MTFGLACCAVEM+ A RYD++RFG R SPRQSDVMIVAGTLTNKMA ALRRVYDQM Sbjct: 59 MTFGLACCAVEMIHAGCSRYDMDRFGVVFRPSPRQSDVMIVAGTLTNKMAPALRRVYDQM 118 Query: 118 PEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 EPR+VISMGSCANGGGYYHYSYSVVRGCDR+VPVD+YVPGCPPTAEAL+YGIL LQKKI Sbjct: 119 AEPRWVISMGSCANGGGYYHYSYSVVRGCDRVVPVDVYVPGCPPTAEALLYGILQLQKKI 178 Query: 178 RRVGNV 183 RR G++ Sbjct: 179 RRTGSI 184 >gi|150396112|ref|YP_001326579.1| NADH dehydrogenase subunit B [Sinorhizobium medicae WSM419] gi|238065217|sp|A6U7W4|NUOB_SINMW RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|150027627|gb|ABR59744.1| NADH-quinone oxidoreductase, B subunit [Sinorhizobium medicae WSM419] Length = 192 Score = 262 bits (671), Expect = 1e-68, Method: Composition-based stats. Identities = 141/182 (77%), Positives = 157/182 (86%) Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62 + + I+ + + DA F I++E+ KGFLVTS D+L+TWARTGSLMWMTFGL Sbjct: 10 VAPQPKGILDPATGKPIGSNDAFFGEINNELADKGFLVTSTDELITWARTGSLMWMTFGL 69 Query: 63 ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122 ACCAVEMMQ SMPRYD ERFGFAPRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRY Sbjct: 70 ACCAVEMMQMSMPRYDAERFGFAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRY 129 Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182 VISMGSCANGGGYYHYSYSVVRGCDR+VPVDIYVPGCPPTAEAL+YG+LLLQKKIRR G Sbjct: 130 VISMGSCANGGGYYHYSYSVVRGCDRVVPVDIYVPGCPPTAEALLYGVLLLQKKIRRTGT 189 Query: 183 VK 184 ++ Sbjct: 190 IE 191 >gi|110633377|ref|YP_673585.1| NADH dehydrogenase subunit B [Mesorhizobium sp. BNC1] gi|122966123|sp|Q11JK5|NUOB_MESSB RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|110284361|gb|ABG62420.1| NADH dehydrogenase subunit B [Chelativorans sp. BNC1] Length = 190 Score = 262 bits (671), Expect = 1e-68, Method: Composition-based stats. Identities = 139/182 (76%), Positives = 154/182 (84%) Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62 + ++ II + + D + I+ E++ KGFLVTS + L+TWARTGSLMWMTFGL Sbjct: 8 VAPRSRGIIDPNTGNPVGANDPFYGAINEELSDKGFLVTSSEALITWARTGSLMWMTFGL 67 Query: 63 ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122 ACCAVEMM SMPRYD ERFG APRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRY Sbjct: 68 ACCAVEMMHTSMPRYDAERFGIAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRY 127 Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGILLLQKKIRR G Sbjct: 128 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILLLQKKIRRTGT 187 Query: 183 VK 184 ++ Sbjct: 188 IE 189 >gi|116251467|ref|YP_767305.1| NADH dehydrogenase subunit B [Rhizobium leguminosarum bv. viciae 3841] gi|238065200|sp|Q1MIL4|NUOB_RHIL3 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|115256115|emb|CAK07196.1| putative NADH-quinone oxidoreductase subunit B [Rhizobium leguminosarum bv. viciae 3841] Length = 194 Score = 262 bits (670), Expect = 1e-68, Method: Composition-based stats. Identities = 140/182 (76%), Positives = 156/182 (85%) Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62 + + II + + D F I++E+ KGFLVTS D+L+ WARTGSLMWMTFGL Sbjct: 12 VAQQPKGIIDPSTGKPIGSNDPFFGEINNELADKGFLVTSTDELINWARTGSLMWMTFGL 71 Query: 63 ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122 ACCAVEMMQ SMPRYD+ERFGFAPRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRY Sbjct: 72 ACCAVEMMQLSMPRYDVERFGFAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRY 131 Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182 VISMGSCANGGGYYHYSYSVVRGCDRIVP+DIYVPGCPPTAEAL+YG+LLLQKKIRR G Sbjct: 132 VISMGSCANGGGYYHYSYSVVRGCDRIVPIDIYVPGCPPTAEALLYGVLLLQKKIRRTGT 191 Query: 183 VK 184 ++ Sbjct: 192 IE 193 >gi|222085576|ref|YP_002544106.1| NADH-ubiquinone oxidoreductase chain B protein [Agrobacterium radiobacter K84] gi|238065070|sp|B9JD43|NUOB_AGRRK RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|221723024|gb|ACM26180.1| NADH-ubiquinone oxidoreductase chain B protein [Agrobacterium radiobacter K84] Length = 193 Score = 262 bits (670), Expect = 2e-68, Method: Composition-based stats. Identities = 139/182 (76%), Positives = 156/182 (85%) Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62 + + II + + D F I++E+ KGFLVTS D+L+ WARTGSLMWMTFGL Sbjct: 11 VAPQPKGIIDPATGKPVGSNDPFFGEINNELADKGFLVTSTDELINWARTGSLMWMTFGL 70 Query: 63 ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122 ACCAVEMMQ SMPRYD+ERFGFAPRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRY Sbjct: 71 ACCAVEMMQVSMPRYDVERFGFAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRY 130 Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182 VISMGSCANGGGYYHYSYSVVRGCDRIVP+DIY+PGCPPTAEAL+YG+LLLQKKIRR G Sbjct: 131 VISMGSCANGGGYYHYSYSVVRGCDRIVPIDIYIPGCPPTAEALLYGVLLLQKKIRRTGT 190 Query: 183 VK 184 ++ Sbjct: 191 IE 192 >gi|298291846|ref|YP_003693785.1| NADH-quinone oxidoreductase subunit beta [Starkeya novella DSM 506] gi|296928357|gb|ADH89166.1| NADH-quinone oxidoreductase, B subunit [Starkeya novella DSM 506] Length = 192 Score = 262 bits (669), Expect = 2e-68, Method: Composition-based stats. Identities = 138/182 (75%), Positives = 156/182 (85%) Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62 + + II + + D F +++E+ KGFLVT+ D+L+ WARTGSLMWMTFGL Sbjct: 10 VAPAARGIIDPNTGKPVGTTDPFFVEVNAELADKGFLVTATDELINWARTGSLMWMTFGL 69 Query: 63 ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122 ACCAVEMMQ SMPRYD+ERFGFAPRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRY Sbjct: 70 ACCAVEMMQTSMPRYDVERFGFAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRY 129 Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY+PGCPPTAEAL+YG+LLLQKKIRR G Sbjct: 130 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYIPGCPPTAEALLYGVLLLQKKIRRTGT 189 Query: 183 VK 184 ++ Sbjct: 190 IE 191 >gi|13471406|ref|NP_102972.1| NADH dehydrogenase subunit B [Mesorhizobium loti MAFF303099] gi|14022148|dbj|BAB48758.1| NADH-ubiquinone dehydrogenase chain B 1 [Mesorhizobium loti MAFF303099] Length = 200 Score = 262 bits (669), Expect = 2e-68, Method: Composition-based stats. Identities = 135/182 (74%), Positives = 154/182 (84%) Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62 + + II + + + D F I++E+ KGFLVTS + L+TWAR+GSLM+MTFGL Sbjct: 18 VAPKPKGIIDPNTGRPVGEDDPFFLEINNELADKGFLVTSTEALITWARSGSLMFMTFGL 77 Query: 63 ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122 ACCAVEM+ SMPRYD ERFG APRASPRQSD+MIVAGTLTNKMA ALR+VYDQMPEPRY Sbjct: 78 ACCAVEMIHTSMPRYDSERFGVAPRASPRQSDIMIVAGTLTNKMAPALRKVYDQMPEPRY 137 Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP+AEAL+YGILLLQKKIRR G Sbjct: 138 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPSAEALLYGILLLQKKIRRTGT 197 Query: 183 VK 184 ++ Sbjct: 198 IE 199 >gi|241204087|ref|YP_002975183.1| NADH dehydrogenase subunit B [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240857977|gb|ACS55644.1| NADH-quinone oxidoreductase, B subunit [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 194 Score = 262 bits (669), Expect = 2e-68, Method: Composition-based stats. Identities = 140/182 (76%), Positives = 156/182 (85%) Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62 + + II + + D F I++E+ KGFLVTS D+L+ WARTGSLMWMTFGL Sbjct: 12 VAQQPKGIIDPSTGKPVGSNDPFFGEINNELADKGFLVTSTDELINWARTGSLMWMTFGL 71 Query: 63 ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122 ACCAVEMMQ SMPRYD+ERFGFAPRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRY Sbjct: 72 ACCAVEMMQLSMPRYDVERFGFAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRY 131 Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182 VISMGSCANGGGYYHYSYSVVRGCDRIVP+DIYVPGCPPTAEAL+YG+LLLQKKIRR G Sbjct: 132 VISMGSCANGGGYYHYSYSVVRGCDRIVPIDIYVPGCPPTAEALLYGVLLLQKKIRRTGT 191 Query: 183 VK 184 ++ Sbjct: 192 IE 193 >gi|254503578|ref|ZP_05115729.1| NADH-quinone oxidoreductase, B subunit subfamily [Labrenzia alexandrii DFL-11] gi|222439649|gb|EEE46328.1| NADH-quinone oxidoreductase, B subunit subfamily [Labrenzia alexandrii DFL-11] Length = 199 Score = 262 bits (669), Expect = 2e-68, Method: Composition-based stats. Identities = 143/191 (74%), Positives = 157/191 (82%), Gaps = 7/191 (3%) Query: 1 MGLTTVN-------QKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTG 53 MGLTT + II + + D F ++ E+ KGFLVTS D L+ WARTG Sbjct: 8 MGLTTAKPLIAEQPKGIIDPNTGKPVGADDPFFLEVNDELADKGFLVTSTDNLIQWARTG 67 Query: 54 SLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRV 113 SLMWMTFGLACCAVEMMQ SMPRYD ERFGFAPRASPRQSDVMIVAGTLTNKMA ALR+V Sbjct: 68 SLMWMTFGLACCAVEMMQMSMPRYDAERFGFAPRASPRQSDVMIVAGTLTNKMAPALRKV 127 Query: 114 YDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLL 173 YDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR+VPVDIYVPGCPPTAEAL+YG+L+L Sbjct: 128 YDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRVVPVDIYVPGCPPTAEALLYGVLML 187 Query: 174 QKKIRRVGNVK 184 QKKIRR G ++ Sbjct: 188 QKKIRRTGTIE 198 >gi|260462231|ref|ZP_05810475.1| NADH-quinone oxidoreductase, B subunit [Mesorhizobium opportunistum WSM2075] gi|259032091|gb|EEW33358.1| NADH-quinone oxidoreductase, B subunit [Mesorhizobium opportunistum WSM2075] Length = 193 Score = 261 bits (668), Expect = 2e-68, Method: Composition-based stats. Identities = 134/182 (73%), Positives = 154/182 (84%) Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62 + + II + + + D F I++E+ KGFLVTS + L+TWAR+GSLM+MTFGL Sbjct: 11 VAPKPKGIIDPNTGKPVGQDDPFFLEINNELADKGFLVTSTEALITWARSGSLMFMTFGL 70 Query: 63 ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122 ACCAVEM+ SMPRYD ERFG APRASPRQSD+MIVAGTLTNKMA ALR+VYDQMPEPRY Sbjct: 71 ACCAVEMIHTSMPRYDSERFGVAPRASPRQSDIMIVAGTLTNKMAPALRKVYDQMPEPRY 130 Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182 VISMGSCANGGGYYHYSYSVVRGCDR+VPVDIYVPGCPP+AEAL+YGILLLQKKIRR G Sbjct: 131 VISMGSCANGGGYYHYSYSVVRGCDRVVPVDIYVPGCPPSAEALLYGILLLQKKIRRTGT 190 Query: 183 VK 184 ++ Sbjct: 191 IE 192 >gi|304391399|ref|ZP_07373341.1| NADH-quinone oxidoreductase subunit b 1 [Ahrensia sp. R2A130] gi|303295628|gb|EFL89986.1| NADH-quinone oxidoreductase subunit b 1 [Ahrensia sp. R2A130] Length = 191 Score = 261 bits (668), Expect = 2e-68, Method: Composition-based stats. Identities = 134/182 (73%), Positives = 154/182 (84%) Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62 + + ++ + + + D F I++E+ KGF+VT+ D L+ W+RTGSLMWMTFGL Sbjct: 9 IAPTPKGVLDPATGKPVGQNDPFFGEINNELADKGFIVTTTDDLINWSRTGSLMWMTFGL 68 Query: 63 ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122 ACCAVEMMQ SMPRYD ERFG APRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRY Sbjct: 69 ACCAVEMMQMSMPRYDSERFGIAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRY 128 Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP+AEAL+YG+LLLQKKIRR G Sbjct: 129 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPSAEALLYGVLLLQKKIRRTGT 188 Query: 183 VK 184 ++ Sbjct: 189 IE 190 >gi|319782982|ref|YP_004142458.1| NADH-quinone oxidoreductase, subunit beta [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|218528069|sp|Q98KQ6|NUOB_RHILO RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|317168870|gb|ADV12408.1| NADH-quinone oxidoreductase, B subunit [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 193 Score = 261 bits (668), Expect = 3e-68, Method: Composition-based stats. Identities = 135/182 (74%), Positives = 154/182 (84%) Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62 + + II + + + D F I++E+ KGFLVTS + L+TWAR+GSLM+MTFGL Sbjct: 11 VAPKPKGIIDPNTGRPVGEDDPFFLEINNELADKGFLVTSTEALITWARSGSLMFMTFGL 70 Query: 63 ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122 ACCAVEM+ SMPRYD ERFG APRASPRQSD+MIVAGTLTNKMA ALR+VYDQMPEPRY Sbjct: 71 ACCAVEMIHTSMPRYDSERFGVAPRASPRQSDIMIVAGTLTNKMAPALRKVYDQMPEPRY 130 Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP+AEAL+YGILLLQKKIRR G Sbjct: 131 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPSAEALLYGILLLQKKIRRTGT 190 Query: 183 VK 184 ++ Sbjct: 191 IE 192 >gi|254469713|ref|ZP_05083118.1| NADH-ubiquinone oxidoreductase chain b protein [Pseudovibrio sp. JE062] gi|211961548|gb|EEA96743.1| NADH-ubiquinone oxidoreductase chain b protein [Pseudovibrio sp. JE062] Length = 194 Score = 261 bits (667), Expect = 4e-68, Method: Composition-based stats. Identities = 137/182 (75%), Positives = 156/182 (85%) Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62 ++ + II + + + D F +++E++ KGFLVTS + L+ WARTGSLMWMTFGL Sbjct: 12 VSQAPKGIIDPNTGRPVGENDPFFMNVNNELSDKGFLVTSSESLIQWARTGSLMWMTFGL 71 Query: 63 ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122 ACCAVEMMQ SMPRYD ERFGFAPR SPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRY Sbjct: 72 ACCAVEMMQMSMPRYDAERFGFAPRGSPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRY 131 Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182 VISMGSCANGGGYYHYSYSVVRGCDR+VPVDIYVPGCPPTAEAL+YG+LLLQKKIRR G Sbjct: 132 VISMGSCANGGGYYHYSYSVVRGCDRVVPVDIYVPGCPPTAEALLYGVLLLQKKIRRTGT 191 Query: 183 VK 184 ++ Sbjct: 192 IE 193 >gi|170748477|ref|YP_001754737.1| NADH-quinone oxidoreductase, B subunit [Methylobacterium radiotolerans JCM 2831] gi|238065171|sp|B1LUN6|NUOB_METRJ RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|170654999|gb|ACB24054.1| NADH-quinone oxidoreductase, B subunit [Methylobacterium radiotolerans JCM 2831] Length = 195 Score = 261 bits (666), Expect = 4e-68, Method: Composition-based stats. Identities = 137/183 (74%), Positives = 153/183 (83%) Query: 2 GLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFG 61 + + II + + D F IS E+ +GFL+T+ D+L+ WARTGSLMWMTFG Sbjct: 12 AIAPQPKGIIDPNTGRPIGADDPTFLSISDELADRGFLLTTTDELINWARTGSLMWMTFG 71 Query: 62 LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPR 121 LACCAVEMMQ SMPRYD ERFGFAPR SPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPR Sbjct: 72 LACCAVEMMQMSMPRYDCERFGFAPRGSPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPR 131 Query: 122 YVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181 YVISMGSCANGGGYYHYSYSVVRGCDR+VPVDIYVPGCPPTAEAL+YG+LLLQKKIRR G Sbjct: 132 YVISMGSCANGGGYYHYSYSVVRGCDRVVPVDIYVPGCPPTAEALLYGVLLLQKKIRRTG 191 Query: 182 NVK 184 ++ Sbjct: 192 TIE 194 >gi|77463071|ref|YP_352575.1| NADH dehydrogenase subunit B [Rhodobacter sphaeroides 2.4.1] gi|221638927|ref|YP_002525189.1| NADH dehydrogenase subunit B [Rhodobacter sphaeroides KD131] gi|332557944|ref|ZP_08412266.1| NADH dehydrogenase subunit B [Rhodobacter sphaeroides WS8N] gi|123592237|sp|Q3J3G0|NUOB1_RHOS4 RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName: Full=NADH dehydrogenase I subunit B 1; AltName: Full=NDH-1 subunit B 1 gi|238065016|sp|B9KQW1|NUOB1_RHOSK RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName: Full=NADH dehydrogenase I subunit B 1; AltName: Full=NDH-1 subunit B 1 gi|77387489|gb|ABA78674.1| NADH dehydrogenase-ubiquinone oxidoreductase, chain B [Rhodobacter sphaeroides 2.4.1] gi|221159708|gb|ACM00688.1| NADH dehydrogenase I, B subunit [Rhodobacter sphaeroides KD131] gi|332275656|gb|EGJ20971.1| NADH dehydrogenase subunit B [Rhodobacter sphaeroides WS8N] Length = 174 Score = 261 bits (666), Expect = 5e-68, Method: Composition-based stats. Identities = 131/161 (81%), Positives = 143/161 (88%) Query: 23 DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82 D D ++ E+ KGFL+T+ + L+ WARTGSL WMTFGLACCAVEMM SMPRYD+ERF Sbjct: 12 DYDTQSLNRELQDKGFLLTTTEDLINWARTGSLHWMTFGLACCAVEMMHTSMPRYDVERF 71 Query: 83 GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142 G APRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSV Sbjct: 72 GVAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSV 131 Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 VRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQ+KIRR G + Sbjct: 132 VRGCDRIVPVDIYVPGCPPTAEALLYGILQLQRKIRRTGTI 172 >gi|154248551|ref|YP_001419509.1| NADH-quinone oxidoreductase, B subunit [Xanthobacter autotrophicus Py2] gi|238065245|sp|A7IPA6|NUOB_XANP2 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|154162636|gb|ABS69852.1| NADH-quinone oxidoreductase, B subunit [Xanthobacter autotrophicus Py2] Length = 194 Score = 261 bits (666), Expect = 5e-68, Method: Composition-based stats. Identities = 138/182 (75%), Positives = 157/182 (86%) Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62 + Q I+ + + D F I+SE+ KGF++T+ D L+TWARTGSLMWMTFGL Sbjct: 12 IAQAPQGIVDPSTGRPVGADDPFFKEINSELADKGFILTTADDLITWARTGSLMWMTFGL 71 Query: 63 ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122 ACCAVEMMQ SMPRYD+ERFGFAPRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRY Sbjct: 72 ACCAVEMMQVSMPRYDVERFGFAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRY 131 Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182 VISMGSCANGGGYYH+SY+VVRGCDRIVPVDIYVPGCPPTAEAL+YG+LLLQKKIRR+G Sbjct: 132 VISMGSCANGGGYYHFSYAVVRGCDRIVPVDIYVPGCPPTAEALLYGVLLLQKKIRRIGT 191 Query: 183 VK 184 ++ Sbjct: 192 IE 193 >gi|296536155|ref|ZP_06898283.1| NADH dehydrogenase (ubiquinone) subunit B [Roseomonas cervicalis ATCC 49957] gi|296263526|gb|EFH10023.1| NADH dehydrogenase (ubiquinone) subunit B [Roseomonas cervicalis ATCC 49957] Length = 184 Score = 260 bits (664), Expect = 7e-68, Method: Composition-based stats. Identities = 127/181 (70%), Positives = 147/181 (81%) Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62 ++ Q + Q+ + DA +S EI KGF+V ++D++V WARTGSL MTFGL Sbjct: 1 MSANEQLAWNSQALPPGAEQDAVIKGVSGEIEDKGFIVANLDKVVNWARTGSLWPMTFGL 60 Query: 63 ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122 ACCAV M+ A MPRYDL+RFG PR SPRQSDVMIVAGTLTNKMA ALR+VYDQM EPR+ Sbjct: 61 ACCAVPMIHAYMPRYDLDRFGVIPRGSPRQSDVMIVAGTLTNKMAPALRKVYDQMAEPRW 120 Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182 VISMGSCANGGGYYHYSYSVVRGCDR+VPVD+YVPGCPPTAEAL+YGIL LQKKIRR G+ Sbjct: 121 VISMGSCANGGGYYHYSYSVVRGCDRVVPVDVYVPGCPPTAEALVYGILQLQKKIRRTGS 180 Query: 183 V 183 + Sbjct: 181 I 181 >gi|154253664|ref|YP_001414488.1| NADH-quinone oxidoreductase subunit B [Parvibaculum lavamentivorans DS-1] gi|238065187|sp|A7HY48|NUOB_PARL1 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|154157614|gb|ABS64831.1| NADH-quinone oxidoreductase, B subunit [Parvibaculum lavamentivorans DS-1] Length = 191 Score = 260 bits (664), Expect = 7e-68, Method: Composition-based stats. Identities = 138/189 (73%), Positives = 157/189 (83%), Gaps = 6/189 (3%) Query: 1 MGLTTVNQ------KIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGS 54 MG+T ++ ++ +S + DA F + + ++ KGF++T+VD L+ W+RTGS Sbjct: 1 MGVTNPDKVISNTPGVVDPATSVPAWQDDAFFRQATDQLADKGFVLTTVDDLINWSRTGS 60 Query: 55 LMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVY 114 LMWMTFGLACCAVEMMQ SMPRYD ERFG APRASPRQSDVMIVAGTLTNKMA ALR+VY Sbjct: 61 LMWMTFGLACCAVEMMQTSMPRYDAERFGVAPRASPRQSDVMIVAGTLTNKMAPALRKVY 120 Query: 115 DQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQ 174 DQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQ Sbjct: 121 DQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILALQ 180 Query: 175 KKIRRVGNV 183 KKIRR G + Sbjct: 181 KKIRRTGTL 189 >gi|126461943|ref|YP_001043057.1| NADH dehydrogenase subunit B [Rhodobacter sphaeroides ATCC 17029] gi|218528014|sp|A3PIW9|NUOB1_RHOS1 RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName: Full=NADH dehydrogenase I subunit B 1; AltName: Full=NDH-1 subunit B 1 gi|126103607|gb|ABN76285.1| NADH-quinone oxidoreductase, B subunit [Rhodobacter sphaeroides ATCC 17029] Length = 176 Score = 260 bits (664), Expect = 7e-68, Method: Composition-based stats. Identities = 131/161 (81%), Positives = 143/161 (88%) Query: 23 DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82 D D ++ E+ KGFL+T+ + L+ WARTGSL WMTFGLACCAVEMM SMPRYD+ERF Sbjct: 14 DYDTQSLNRELQDKGFLLTTTEDLINWARTGSLHWMTFGLACCAVEMMHTSMPRYDVERF 73 Query: 83 GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142 G APRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSV Sbjct: 74 GVAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSV 133 Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 VRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQ+KIRR G + Sbjct: 134 VRGCDRIVPVDIYVPGCPPTAEALLYGILQLQRKIRRTGTI 174 >gi|307942118|ref|ZP_07657469.1| NADH-quinone oxidoreductase subunit b 1 [Roseibium sp. TrichSKD4] gi|307774404|gb|EFO33614.1| NADH-quinone oxidoreductase subunit b 1 [Roseibium sp. TrichSKD4] Length = 193 Score = 260 bits (664), Expect = 8e-68, Method: Composition-based stats. Identities = 141/192 (73%), Positives = 158/192 (82%), Gaps = 8/192 (4%) Query: 1 MGLTTVNQK--------IISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWART 52 MGLT ++ II + + D F ++ ++ KGFLVTS D L+ WART Sbjct: 1 MGLTQTSKPLIAEQPKGIIDPNTGKPVGADDPFFLEVNDQLADKGFLVTSTDNLIQWART 60 Query: 53 GSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRR 112 GSLMWMTFGLACCAVEMMQ SMPRYD+ERFGFAPRASPRQSDVMIVAGTLTNKMA ALR+ Sbjct: 61 GSLMWMTFGLACCAVEMMQMSMPRYDVERFGFAPRASPRQSDVMIVAGTLTNKMAPALRK 120 Query: 113 VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILL 172 VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR+VPVDIYVPGCPPTAEAL+YG+L+ Sbjct: 121 VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRVVPVDIYVPGCPPTAEALLYGVLM 180 Query: 173 LQKKIRRVGNVK 184 LQKKIRR G ++ Sbjct: 181 LQKKIRRTGTIE 192 >gi|158423292|ref|YP_001524584.1| NADH dehydrogenase subunit B [Azorhizobium caulinodans ORS 571] gi|218527974|sp|A8I3Y7|NUOB_AZOC5 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|158330181|dbj|BAF87666.1| NADH ubiqionone oxidoreductase chain B protein [Azorhizobium caulinodans ORS 571] Length = 192 Score = 259 bits (663), Expect = 1e-67, Method: Composition-based stats. Identities = 138/182 (75%), Positives = 158/182 (86%) Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62 ++ + II + + D + I++E+ KGFLVT+VD L+TWARTGSLMWMTFGL Sbjct: 10 VSEAPKGIIDPSTGRPILSDDPFYKEINAELADKGFLVTTVDDLITWARTGSLMWMTFGL 69 Query: 63 ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122 ACCAVEMMQ SMPRYD+ERFGFAPRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRY Sbjct: 70 ACCAVEMMQVSMPRYDVERFGFAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRY 129 Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182 VISMGSCANGGGYYHYSY+VVRGCDR+VPVDIYVPGCPPTAEAL+YG+LLLQ+KIRR G Sbjct: 130 VISMGSCANGGGYYHYSYAVVRGCDRVVPVDIYVPGCPPTAEALLYGVLLLQRKIRRTGT 189 Query: 183 VK 184 ++ Sbjct: 190 IE 191 >gi|49474178|ref|YP_032220.1| NADH dehydrogenase subunit B [Bartonella quintana str. Toulouse] gi|81647090|sp|Q6FZZ0|NUOB_BARQU RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|49239682|emb|CAF26057.1| NADH dehydrogenase I, B subunit [Bartonella quintana str. Toulouse] Length = 193 Score = 259 bits (663), Expect = 1e-67, Method: Composition-based stats. Identities = 139/184 (75%), Positives = 158/184 (85%) Query: 1 MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTF 60 M + ++ II + + D F I++E++ KGFLVTS D L+TWARTGSLMWM+F Sbjct: 9 MVVAPKSKGIIDPNTGKLIGSDDRFFHDINAELSDKGFLVTSADALITWARTGSLMWMSF 68 Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 GLACCA+EMMQ SMP YD ERFG+APRASPRQSDVM+VAGTLTNKMA ALR+VYDQMPEP Sbjct: 69 GLACCAIEMMQCSMPHYDNERFGYAPRASPRQSDVMVVAGTLTNKMAPALRKVYDQMPEP 128 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGILLLQKKIRR Sbjct: 129 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILLLQKKIRRT 188 Query: 181 GNVK 184 G+++ Sbjct: 189 GSIE 192 >gi|319405697|emb|CBI79320.1| NADH dehydrogenase I, B subunit [Bartonella sp. AR 15-3] Length = 193 Score = 259 bits (662), Expect = 1e-67, Method: Composition-based stats. Identities = 138/182 (75%), Positives = 159/182 (87%) Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62 + ++ II ++ ++ + FS I++E+ KGFLVTS D L+TWARTGSLMWM+FGL Sbjct: 11 VAPKSKGIIDPNTAELVDSNNKFFSDINTELGDKGFLVTSADALITWARTGSLMWMSFGL 70 Query: 63 ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122 ACCAVEMMQ SMP YD ERFG+APRASPRQSDVM+VAGTLTNKMA ALR+VYDQMPEPRY Sbjct: 71 ACCAVEMMQCSMPHYDNERFGYAPRASPRQSDVMVVAGTLTNKMAPALRKVYDQMPEPRY 130 Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY+PGCPPTAEAL+YGILLLQKKIRR G+ Sbjct: 131 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYIPGCPPTAEALLYGILLLQKKIRRTGS 190 Query: 183 VK 184 ++ Sbjct: 191 IE 192 >gi|319898883|ref|YP_004158976.1| NADH dehydrogenase I, B subunit [Bartonella clarridgeiae 73] gi|319402847|emb|CBI76398.1| NADH dehydrogenase I, B subunit [Bartonella clarridgeiae 73] Length = 193 Score = 259 bits (661), Expect = 2e-67, Method: Composition-based stats. Identities = 141/182 (77%), Positives = 157/182 (86%) Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62 +T + II + + D FS I++E+ KGFLVTS D L+TWARTGSLMWM+FGL Sbjct: 11 VTPKPKGIIDPNTGELVGSNDKFFSDINTELGDKGFLVTSADALITWARTGSLMWMSFGL 70 Query: 63 ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122 ACCAVEMMQ SMP YD ERFG+APRASPRQSDVM+VAGTLTNKMA ALR+VYDQMPEPRY Sbjct: 71 ACCAVEMMQCSMPHYDNERFGYAPRASPRQSDVMVVAGTLTNKMAPALRKVYDQMPEPRY 130 Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGILLLQKKIRR G+ Sbjct: 131 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILLLQKKIRRTGS 190 Query: 183 VK 184 ++ Sbjct: 191 IE 192 >gi|121602032|ref|YP_989071.1| NADH dehydrogenase subunit B [Bartonella bacilliformis KC583] gi|238055234|sp|A1USW8|NUOB_BARBK RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|120614209|gb|ABM44810.1| NADH dehydrogenase (quinone), B subunit [Bartonella bacilliformis KC583] Length = 193 Score = 259 bits (661), Expect = 2e-67, Method: Composition-based stats. Identities = 140/182 (76%), Positives = 158/182 (86%) Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62 + + II +S + D F +++E++ KGFLVTSVD L+TWARTGSLMWM+FGL Sbjct: 11 VAPQAKGIIDPNTSKLIGANDQFFQDMNAELSDKGFLVTSVDSLITWARTGSLMWMSFGL 70 Query: 63 ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122 ACCAVEMMQ SMP YD ERFG+APRASPRQSDVM+VAGTLTNKMA ALR+VYDQMPEPRY Sbjct: 71 ACCAVEMMQCSMPHYDNERFGYAPRASPRQSDVMVVAGTLTNKMAPALRKVYDQMPEPRY 130 Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGILLLQKKIRR G+ Sbjct: 131 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILLLQKKIRRTGS 190 Query: 183 VK 184 ++ Sbjct: 191 IE 192 >gi|323138146|ref|ZP_08073219.1| NADH-quinone oxidoreductase, B subunit [Methylocystis sp. ATCC 49242] gi|322396608|gb|EFX99136.1| NADH-quinone oxidoreductase, B subunit [Methylocystis sp. ATCC 49242] Length = 194 Score = 258 bits (660), Expect = 2e-67, Method: Composition-based stats. Identities = 131/182 (71%), Positives = 155/182 (85%) Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62 + + +I ++ + D F +I+ E+ KGF VT+ D ++ WARTGSLMWMTFGL Sbjct: 12 VAPQPKGLIDPRTGKPVGSDDPFFLQINEELADKGFFVTATDDVINWARTGSLMWMTFGL 71 Query: 63 ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122 ACCAVEM+QA+MPRYDLERFGFAPRASPRQSD +I+AGTLTNKMA ALR+VYDQMPEPRY Sbjct: 72 ACCAVEMIQAAMPRYDLERFGFAPRASPRQSDCIIIAGTLTNKMAPALRKVYDQMPEPRY 131 Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182 VISMGSCANGGGYYHYSYSVVRGCDRI+PVD+YVPGCPP+AEAL+YG+LLLQKKIRR G Sbjct: 132 VISMGSCANGGGYYHYSYSVVRGCDRIIPVDVYVPGCPPSAEALVYGMLLLQKKIRRTGT 191 Query: 183 VK 184 ++ Sbjct: 192 IE 193 >gi|188580284|ref|YP_001923729.1| NADH dehydrogenase subunit B [Methylobacterium populi BJ001] gi|238065170|sp|B1ZA45|NUOB_METPB RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|179343782|gb|ACB79194.1| NADH-quinone oxidoreductase, B subunit [Methylobacterium populi BJ001] Length = 195 Score = 258 bits (660), Expect = 2e-67, Method: Composition-based stats. Identities = 138/182 (75%), Positives = 154/182 (84%) Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62 + + II + + D F ISSE+ +GFLVTS D+L+ WARTGSLMWMTFGL Sbjct: 13 IAPAPKGIIDPATGRPIGANDPTFLSISSELADRGFLVTSADELINWARTGSLMWMTFGL 72 Query: 63 ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122 ACCAVEMMQ SMPRYD ERFGFAPR SPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRY Sbjct: 73 ACCAVEMMQMSMPRYDCERFGFAPRGSPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRY 132 Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182 VISMGSCANGGGYYHYSYSVVRGCDR+VPVDIYVPGCPP+AEAL+YG+LLLQ+KIRR G Sbjct: 133 VISMGSCANGGGYYHYSYSVVRGCDRVVPVDIYVPGCPPSAEALLYGVLLLQRKIRRTGT 192 Query: 183 VK 184 ++ Sbjct: 193 IE 194 >gi|319407266|emb|CBI80905.1| NADH dehydrogenase I, B subunit [Bartonella sp. 1-1C] Length = 193 Score = 258 bits (660), Expect = 2e-67, Method: Composition-based stats. Identities = 138/182 (75%), Positives = 157/182 (86%) Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62 + + II + + D F+ I++E+ KGFLVTSVD L+TWARTGSLMWM+FGL Sbjct: 11 VAPKAKGIIDPNTGKLVGSNDKFFNDINAELGDKGFLVTSVDSLITWARTGSLMWMSFGL 70 Query: 63 ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122 ACCAVEM+Q SMP YD ERFG+APRASPRQSDVM+VAGTLTNKMA ALR+VYDQMPEPRY Sbjct: 71 ACCAVEMIQCSMPHYDNERFGYAPRASPRQSDVMVVAGTLTNKMAPALRKVYDQMPEPRY 130 Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY+PGCPPTAEAL+YGILLLQKKIRR G+ Sbjct: 131 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYIPGCPPTAEALLYGILLLQKKIRRTGS 190 Query: 183 VK 184 ++ Sbjct: 191 IE 192 >gi|319404258|emb|CBI77851.1| NADH dehydrogenase I, B subunit [Bartonella rochalimae ATCC BAA-1498] Length = 193 Score = 258 bits (659), Expect = 3e-67, Method: Composition-based stats. Identities = 139/182 (76%), Positives = 157/182 (86%) Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62 + + II + + D FS I++E+ KGFLVTSVD L+TWARTGSLMWM+FGL Sbjct: 11 VAPKAKGIIDPNTGKLVGSNDKFFSDINAELGDKGFLVTSVDALITWARTGSLMWMSFGL 70 Query: 63 ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122 ACCAVEM+Q SMP YD ERFG+APRASPRQSDVM+VAGTLTNKMA ALR+VYDQMPEPRY Sbjct: 71 ACCAVEMIQCSMPHYDNERFGYAPRASPRQSDVMVVAGTLTNKMAPALRKVYDQMPEPRY 130 Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY+PGCPPTAEAL+YGILLLQKKIRR G+ Sbjct: 131 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYIPGCPPTAEALLYGILLLQKKIRRTGS 190 Query: 183 VK 184 ++ Sbjct: 191 IE 192 >gi|23006634|ref|ZP_00048864.1| COG0377: NADH:ubiquinone oxidoreductase 20 kD subunit and related Fe-S oxidoreductases [Magnetospirillum magnetotacticum MS-1] Length = 195 Score = 257 bits (658), Expect = 4e-67, Method: Composition-based stats. Identities = 136/182 (74%), Positives = 154/182 (84%) Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62 + + II + + D F I+ E+ +GFLVTS D+L+ WARTGSLMWMTFGL Sbjct: 13 IAPAPKGIIDPATGRPIGANDPTFLSINDELADRGFLVTSADELINWARTGSLMWMTFGL 72 Query: 63 ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122 ACCAVEMMQ SMPRYD ERFGFAPR SPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRY Sbjct: 73 ACCAVEMMQMSMPRYDCERFGFAPRGSPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRY 132 Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182 VISMGSCANGGGYYHYSYSVVRGCDR+VPVDIYVPGCPP+AEAL+YG+LLLQ+KIRR+G Sbjct: 133 VISMGSCANGGGYYHYSYSVVRGCDRVVPVDIYVPGCPPSAEALLYGVLLLQRKIRRLGT 192 Query: 183 VK 184 ++ Sbjct: 193 IE 194 >gi|157827450|ref|YP_001496514.1| NADH dehydrogenase subunit B [Rickettsia bellii OSU 85-389] gi|218528017|sp|A8GX77|NUOB_RICB8 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|157802754|gb|ABV79477.1| NADH dehydrogenase subunit B [Rickettsia bellii OSU 85-389] Length = 174 Score = 257 bits (658), Expect = 4e-67, Method: Composition-based stats. Identities = 113/158 (71%), Positives = 137/158 (86%) Query: 27 SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP 86 +++E++++GFL+T VD ++ WAR+ SL MTFGLACCAVEMMQA+ RYD++RFG Sbjct: 10 ELLNNELSNRGFLLTKVDDVIGWARSNSLWPMTFGLACCAVEMMQAAASRYDMDRFGMLF 69 Query: 87 RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGC 146 R SPRQSD+MIVAGTLTNKMA ALR+VYDQM EP++V+SMGSCANGGGYYH+SYSVVRGC Sbjct: 70 RPSPRQSDLMIVAGTLTNKMAPALRKVYDQMAEPKWVLSMGSCANGGGYYHFSYSVVRGC 129 Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 DRIVPVD+YVPGCPPTAEALIYG++ LQKKI+R K Sbjct: 130 DRIVPVDVYVPGCPPTAEALIYGLMQLQKKIKRTTGFK 167 >gi|92117743|ref|YP_577472.1| NADH dehydrogenase subunit B [Nitrobacter hamburgensis X14] gi|123387068|sp|Q1QL85|NUOB_NITHX RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|91800637|gb|ABE63012.1| NADH dehydrogenase subunit B [Nitrobacter hamburgensis X14] Length = 202 Score = 257 bits (658), Expect = 4e-67, Method: Composition-based stats. Identities = 137/182 (75%), Positives = 155/182 (85%) Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62 +T I+ ++ + D F ++ E++ KGF V + D L+TWARTGSLMWMTFGL Sbjct: 20 VTPAAASILDPRTGRPVGAGDPYFLEVNHELSDKGFFVAATDDLITWARTGSLMWMTFGL 79 Query: 63 ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122 ACCAVEMMQ SMPRYD+ERFGFAPRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRY Sbjct: 80 ACCAVEMMQVSMPRYDVERFGFAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRY 139 Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182 VISMGSCANGGGYYHYSYSVVRGCDRIVP+D+YVPGCPPTAEAL+YGILLLQKKIRR G Sbjct: 140 VISMGSCANGGGYYHYSYSVVRGCDRIVPIDVYVPGCPPTAEALLYGILLLQKKIRRTGT 199 Query: 183 VK 184 ++ Sbjct: 200 IE 201 >gi|163850516|ref|YP_001638559.1| NADH-quinone oxidoreductase, B subunit [Methylobacterium extorquens PA1] gi|218529213|ref|YP_002420029.1| NADH dehydrogenase subunit B [Methylobacterium chloromethanicum CM4] gi|240137581|ref|YP_002962052.1| NADH-quinone oxidoreductase chain B (NADH dehydrogenase I, chain B) [Methylobacterium extorquens AM1] gi|254560052|ref|YP_003067147.1| NADH-quinone oxidoreductase subunit B [Methylobacterium extorquens DM4] gi|238065167|sp|A9W1N2|NUOB_METEP RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|254767795|sp|B7KQ65|NUOB_METC4 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|163662121|gb|ABY29488.1| NADH-quinone oxidoreductase, B subunit [Methylobacterium extorquens PA1] gi|218521516|gb|ACK82101.1| NADH-quinone oxidoreductase, B subunit [Methylobacterium chloromethanicum CM4] gi|240007549|gb|ACS38775.1| NADH-quinone oxidoreductase chain B (NADH dehydrogenase I, chain B) [Methylobacterium extorquens AM1] gi|254267330|emb|CAX23162.1| NADH-quinone oxidoreductase chain B (NADH dehydrogenase I, chain B) [Methylobacterium extorquens DM4] Length = 195 Score = 257 bits (657), Expect = 4e-67, Method: Composition-based stats. Identities = 136/182 (74%), Positives = 154/182 (84%) Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62 + + II + + D F I+ E+ +GFLVTS D+L+ WARTGSLMWMTFGL Sbjct: 13 IAPAPKGIIDPATGRPIGANDPTFLSINDELADRGFLVTSADELINWARTGSLMWMTFGL 72 Query: 63 ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122 ACCAVEMMQ SMPRYD ERFGFAPR SPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRY Sbjct: 73 ACCAVEMMQMSMPRYDCERFGFAPRGSPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRY 132 Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182 VISMGSCANGGGYYHYSYSVVRGCDR+VPVDIYVPGCPP+AEAL+YG+LLLQ+KIRR+G Sbjct: 133 VISMGSCANGGGYYHYSYSVVRGCDRVVPVDIYVPGCPPSAEALLYGVLLLQRKIRRIGT 192 Query: 183 VK 184 ++ Sbjct: 193 IE 194 >gi|49475657|ref|YP_033698.1| NADH dehydrogenase subunit B [Bartonella henselae str. Houston-1] gi|81647866|sp|Q6G389|NUOB_BARHE RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|49238464|emb|CAF27692.1| NADH dehydrogenase I, B subunit [Bartonella henselae str. Houston-1] Length = 193 Score = 257 bits (657), Expect = 4e-67, Method: Composition-based stats. Identities = 141/192 (73%), Positives = 160/192 (83%), Gaps = 8/192 (4%) Query: 1 MGLTTVN--------QKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWART 52 MGL + N + II + + D F +++E++ KGFLVTS D L+TWART Sbjct: 1 MGLISSNSTITAPKSKGIIDPNTGELIGSDDRFFCEVNAELSEKGFLVTSADALITWART 60 Query: 53 GSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRR 112 GSLMWM+FGLACCA+EMMQ SMP YD ERFG+APRASPRQSDVM+VAGTLTNKMA ALR+ Sbjct: 61 GSLMWMSFGLACCAIEMMQCSMPHYDNERFGYAPRASPRQSDVMVVAGTLTNKMAPALRK 120 Query: 113 VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILL 172 VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGILL Sbjct: 121 VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILL 180 Query: 173 LQKKIRRVGNVK 184 LQKKIRR G+++ Sbjct: 181 LQKKIRRTGSIE 192 >gi|15888598|ref|NP_354279.1| NADH dehydrogenase subunit B [Agrobacterium tumefaciens str. C58] gi|15156318|gb|AAK87064.1| NADH ubiqionone oxidoreductase chain B [Agrobacterium tumefaciens str. C58] Length = 201 Score = 257 bits (657), Expect = 4e-67, Method: Composition-based stats. Identities = 138/183 (75%), Positives = 156/183 (85%), Gaps = 1/183 (0%) Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62 + + II + + DA F+ I+ E+ KGFLVTS D+L+TWARTGSLMWM FGL Sbjct: 18 VAPQPKGIIDPATGKPVGSNDAYFTEINDELADKGFLVTSTDELITWARTGSLMWMQFGL 77 Query: 63 ACCAVE-MMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPR 121 ACCAVE +MQAS PRYD+ERFG APRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPR Sbjct: 78 ACCAVEGLMQASGPRYDMERFGVAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPR 137 Query: 122 YVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181 YVISMGSCANGGGYYHYSY+VVRGCDR+VPVDIYVPGCPPTAEAL+YG+LLLQKKIRR G Sbjct: 138 YVISMGSCANGGGYYHYSYAVVRGCDRVVPVDIYVPGCPPTAEALLYGVLLLQKKIRRTG 197 Query: 182 NVK 184 ++ Sbjct: 198 TIE 200 >gi|146278043|ref|YP_001168202.1| NADH dehydrogenase subunit B [Rhodobacter sphaeroides ATCC 17025] gi|218528015|sp|A4WU33|NUOB2_RHOS5 RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName: Full=NADH dehydrogenase I subunit B 2; AltName: Full=NDH-1 subunit B 2 gi|145556284|gb|ABP70897.1| NADH-quinone oxidoreductase, B subunit [Rhodobacter sphaeroides ATCC 17025] Length = 174 Score = 257 bits (657), Expect = 4e-67, Method: Composition-based stats. Identities = 130/161 (80%), Positives = 144/161 (89%) Query: 23 DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82 D D + ++ E+ KGFL+T+ + L+ WARTGSL WMTFGLACCAVEMM SMPRYD+ERF Sbjct: 12 DYDTAGLNRELQDKGFLLTTTEDLINWARTGSLHWMTFGLACCAVEMMHTSMPRYDVERF 71 Query: 83 GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142 G APRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSV Sbjct: 72 GVAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSV 131 Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 VRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQ++IRR G + Sbjct: 132 VRGCDRIVPVDIYVPGCPPTAEALLYGILQLQRRIRRTGTI 172 >gi|220924006|ref|YP_002499308.1| NADH dehydrogenase subunit B [Methylobacterium nodulans ORS 2060] gi|238065169|sp|B8IUU7|NUOB_METNO RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|219948613|gb|ACL59005.1| NADH-quinone oxidoreductase, B subunit [Methylobacterium nodulans ORS 2060] Length = 197 Score = 257 bits (657), Expect = 5e-67, Method: Composition-based stats. Identities = 137/183 (74%), Positives = 154/183 (84%) Query: 2 GLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFG 61 + + II + + D F I+ E+ +GFL+T+ D L+TWARTGSLMWMTFG Sbjct: 14 AIAPQPKGIIDPATGLPVGATDPTFLSINDELADRGFLLTTADDLITWARTGSLMWMTFG 73 Query: 62 LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPR 121 LACCAVEMMQ SMPRYD ERFGFAPRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPR Sbjct: 74 LACCAVEMMQMSMPRYDAERFGFAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPR 133 Query: 122 YVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181 YVISMGSCANGGGYYHYSYSVVRGCDR+VPVDIYVPGCPP+AEAL+YG+LLLQKKIRR G Sbjct: 134 YVISMGSCANGGGYYHYSYSVVRGCDRVVPVDIYVPGCPPSAEALLYGVLLLQKKIRRTG 193 Query: 182 NVK 184 ++ Sbjct: 194 TIE 196 >gi|162148810|ref|YP_001603271.1| NADH dehydrogenase subunit B [Gluconacetobacter diazotrophicus PAl 5] gi|209545442|ref|YP_002277671.1| NADH dehydrogenase subunit B [Gluconacetobacter diazotrophicus PAl 5] gi|221272394|sp|A9HRU3|NUOB2_GLUDA RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName: Full=NADH dehydrogenase I subunit B 2; AltName: Full=NDH-1 subunit B 2 gi|161787387|emb|CAP56982.1| NADH-quinone oxidoreductase chain B [Gluconacetobacter diazotrophicus PAl 5] gi|209533119|gb|ACI53056.1| NADH-quinone oxidoreductase, B subunit [Gluconacetobacter diazotrophicus PAl 5] Length = 191 Score = 257 bits (657), Expect = 5e-67, Method: Composition-based stats. Identities = 128/167 (76%), Positives = 139/167 (83%) Query: 17 CSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPR 76 + DA I+ EIT KGF+V S+D+LV W RTGSL M+FGLACCAVEM+ A MPR Sbjct: 22 PPGPEQDAVIKGITGEITEKGFVVASLDKLVNWGRTGSLWPMSFGLACCAVEMIHAYMPR 81 Query: 77 YDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY 136 YDL+R G PR SPRQSDVMIVAGTLTNKMA ALRRVYDQM EPR+VISMGSCANGGGYY Sbjct: 82 YDLDRMGIIPRGSPRQSDVMIVAGTLTNKMAPALRRVYDQMAEPRWVISMGSCANGGGYY 141 Query: 137 HYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 HYSYSVVRGCDRIVPVD+YVPGCPPTAEALIYGI LQKKIRR G + Sbjct: 142 HYSYSVVRGCDRIVPVDVYVPGCPPTAEALIYGIFQLQKKIRRTGTI 188 >gi|325292633|ref|YP_004278497.1| NADH dehydrogenase I chain B [Agrobacterium sp. H13-3] gi|238065076|sp|A9CJB2|NUOB_AGRT5 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|325060486|gb|ADY64177.1| NADH dehydrogenase I chain B [Agrobacterium sp. H13-3] Length = 194 Score = 257 bits (657), Expect = 5e-67, Method: Composition-based stats. Identities = 138/183 (75%), Positives = 156/183 (85%), Gaps = 1/183 (0%) Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62 + + II + + DA F+ I+ E+ KGFLVTS D+L+TWARTGSLMWM FGL Sbjct: 11 VAPQPKGIIDPATGKPVGSNDAYFTEINDELADKGFLVTSTDELITWARTGSLMWMQFGL 70 Query: 63 ACCAVE-MMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPR 121 ACCAVE +MQAS PRYD+ERFG APRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPR Sbjct: 71 ACCAVEGLMQASGPRYDMERFGVAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPR 130 Query: 122 YVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181 YVISMGSCANGGGYYHYSY+VVRGCDR+VPVDIYVPGCPPTAEAL+YG+LLLQKKIRR G Sbjct: 131 YVISMGSCANGGGYYHYSYAVVRGCDRVVPVDIYVPGCPPTAEALLYGVLLLQKKIRRTG 190 Query: 182 NVK 184 ++ Sbjct: 191 TIE 193 >gi|170742512|ref|YP_001771167.1| NADH dehydrogenase subunit B [Methylobacterium sp. 4-46] gi|238065172|sp|B0ULK5|NUOB_METS4 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|168196786|gb|ACA18733.1| NADH-quinone oxidoreductase, B subunit [Methylobacterium sp. 4-46] Length = 195 Score = 257 bits (657), Expect = 5e-67, Method: Composition-based stats. Identities = 136/183 (74%), Positives = 154/183 (84%) Query: 2 GLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFG 61 + + I+ + + D F I+ E+ +GFL+T+ D L+TWARTGSLMWMTFG Sbjct: 12 AIAPEPKGILDPATGLPIGATDPTFLSINDELADRGFLLTTADDLITWARTGSLMWMTFG 71 Query: 62 LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPR 121 LACCAVEMMQ SMPRYD ERFGFAPRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPR Sbjct: 72 LACCAVEMMQMSMPRYDAERFGFAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPR 131 Query: 122 YVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181 YVISMGSCANGGGYYHYSYSVVRGCDR+VPVDIYVPGCPP+AEAL+YG+LLLQKKIRR G Sbjct: 132 YVISMGSCANGGGYYHYSYSVVRGCDRVVPVDIYVPGCPPSAEALLYGVLLLQKKIRRTG 191 Query: 182 NVK 184 ++ Sbjct: 192 TIE 194 >gi|114327965|ref|YP_745122.1| NADH dehydrogenase subunit B [Granulibacter bethesdensis CGDNIH1] gi|122327073|sp|Q0BSK3|NUOB_GRABC RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|114316139|gb|ABI62199.1| NADH-quinone oxidoreductase chain B [Granulibacter bethesdensis CGDNIH1] Length = 194 Score = 257 bits (657), Expect = 5e-67, Method: Composition-based stats. Identities = 129/180 (71%), Positives = 147/180 (81%) Query: 4 TTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLA 63 T + + ++ +A I+ E+ KGF+V ++D+LV WARTGSL MTFGLA Sbjct: 12 TADEAMLWNREALPPGPGQEAVLRGITGEMADKGFVVANLDKLVNWARTGSLWPMTFGLA 71 Query: 64 CCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYV 123 CCAVEM+ A MPRYDL+RFG PRASPRQSDVMIVAGTLTNKMA ALRRVYDQMPEPR+V Sbjct: 72 CCAVEMIHAYMPRYDLDRFGVIPRASPRQSDVMIVAGTLTNKMAPALRRVYDQMPEPRWV 131 Query: 124 ISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 ISMGSCANGGGYYHYSYSVVRGCDRIVPVD+YVPGCPPTAEAL+YGI+ LQKKIRR G + Sbjct: 132 ISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALVYGIMQLQKKIRRTGTI 191 >gi|75676078|ref|YP_318499.1| NADH dehydrogenase subunit B [Nitrobacter winogradskyi Nb-255] gi|123613264|sp|Q3SRE4|NUOB_NITWN RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|74420948|gb|ABA05147.1| NADH dehydrogenase subunit B [Nitrobacter winogradskyi Nb-255] Length = 207 Score = 257 bits (657), Expect = 6e-67, Method: Composition-based stats. Identities = 139/177 (78%), Positives = 153/177 (86%) Query: 8 QKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAV 67 I+ + + D F ++ E++ KGF V + D L+TWARTGSLMWMTFGLACCAV Sbjct: 30 TSILDPATGRPVGASDPYFLEVNHELSDKGFFVAAADDLITWARTGSLMWMTFGLACCAV 89 Query: 68 EMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMG 127 EMMQ SMPRYD+ERFGFAPRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMG Sbjct: 90 EMMQVSMPRYDVERFGFAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMG 149 Query: 128 SCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 SCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGILLLQKKIRRVG ++ Sbjct: 150 SCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILLLQKKIRRVGTIE 206 >gi|328543686|ref|YP_004303795.1| NADH-quinone oxidoreductase subunit B [polymorphum gilvum SL003B-26A1] gi|326413430|gb|ADZ70493.1| NADH-quinone oxidoreductase subunit B [Polymorphum gilvum SL003B-26A1] Length = 193 Score = 257 bits (656), Expect = 6e-67, Method: Composition-based stats. Identities = 142/192 (73%), Positives = 157/192 (81%), Gaps = 8/192 (4%) Query: 1 MGLTTVN--------QKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWART 52 MGLTT + II + + D F ++ E+ KGFLVT+ D L+ WART Sbjct: 1 MGLTTTKGPLVAPAPRGIIDPNTGKPVGANDPFFMGMNDELADKGFLVTTTDNLIQWART 60 Query: 53 GSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRR 112 GSLMWMTFGLACCAVEMMQ SMPRYD ERFGFAPRASPRQSDVMIVAGTLTNKMA ALR+ Sbjct: 61 GSLMWMTFGLACCAVEMMQMSMPRYDAERFGFAPRASPRQSDVMIVAGTLTNKMAPALRK 120 Query: 113 VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILL 172 VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR+VPVDIYVPGCPPTAEAL+YG+L+ Sbjct: 121 VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRVVPVDIYVPGCPPTAEALLYGVLM 180 Query: 173 LQKKIRRVGNVK 184 LQKKIRR G ++ Sbjct: 181 LQKKIRRTGTIE 192 >gi|254456317|ref|ZP_05069746.1| NADH dehydrogenase i chain b [Candidatus Pelagibacter sp. HTCC7211] gi|207083319|gb|EDZ60745.1| NADH dehydrogenase i chain b [Candidatus Pelagibacter sp. HTCC7211] Length = 171 Score = 257 bits (656), Expect = 6e-67, Method: Composition-based stats. Identities = 126/164 (76%), Positives = 146/164 (89%) Query: 19 LEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78 +++V +F +++ + + GF+ TS+D L+ W+R+GSL WMTFGLACCAVEMMQ +MPRYD Sbjct: 5 IDQVPEEFKQLAEDFSKNGFITTSLDNLINWSRSGSLHWMTFGLACCAVEMMQTAMPRYD 64 Query: 79 LERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY 138 LERFG APR SPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHY Sbjct: 65 LERFGAAPRGSPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHY 124 Query: 139 SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182 SYSVVRGCDRIVPVD+YVPGCPP+AEAL+YGIL LQKKIR G+ Sbjct: 125 SYSVVRGCDRIVPVDVYVPGCPPSAEALLYGILQLQKKIRNKGS 168 >gi|329889333|ref|ZP_08267676.1| NADH-quinone oxidoreductase subunit B [Brevundimonas diminuta ATCC 11568] gi|328844634|gb|EGF94198.1| NADH-quinone oxidoreductase subunit B [Brevundimonas diminuta ATCC 11568] Length = 192 Score = 257 bits (656), Expect = 7e-67, Method: Composition-based stats. Identities = 129/191 (67%), Positives = 153/191 (80%), Gaps = 7/191 (3%) Query: 1 MGLTTVNQKIISGQSSCSLEKV-------DADFSRISSEITHKGFLVTSVDQLVTWARTG 53 M + + ++ S+ D F +++E+ +GFL TS+D ++TWARTG Sbjct: 1 MAVIAPSSPLVPAGSAARSTVEGYDPKIHDKFFESVNTELGERGFLTTSLDDVITWARTG 60 Query: 54 SLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRV 113 SLMWM+FGLACCAVEM+ SMPR+DLERFG APR SPRQSD+MIVAGTLTNKMA ALR+V Sbjct: 61 SLMWMSFGLACCAVEMIHLSMPRFDLERFGTAPRGSPRQSDLMIVAGTLTNKMAPALRKV 120 Query: 114 YDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLL 173 YDQMP+PRYVISMGSCANGGGYYHYSYSVVRGCDR+VPVD+YVPGCPPTAEAL+YGIL L Sbjct: 121 YDQMPDPRYVISMGSCANGGGYYHYSYSVVRGCDRVVPVDVYVPGCPPTAEALLYGILQL 180 Query: 174 QKKIRRVGNVK 184 QKKIRR G ++ Sbjct: 181 QKKIRRTGTIE 191 >gi|296116534|ref|ZP_06835144.1| NADH dehydrogenase subunit B [Gluconacetobacter hansenii ATCC 23769] gi|295976746|gb|EFG83514.1| NADH dehydrogenase subunit B [Gluconacetobacter hansenii ATCC 23769] Length = 192 Score = 256 bits (655), Expect = 8e-67, Method: Composition-based stats. Identities = 126/167 (75%), Positives = 140/167 (83%) Query: 17 CSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPR 76 + DA ++ EIT KGF+V ++D++V W RTGSL M+FGLACCAVEM+ A MPR Sbjct: 23 PPGPEQDAVIRGVTGEITEKGFVVANLDKIVNWGRTGSLWPMSFGLACCAVEMIHAYMPR 82 Query: 77 YDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY 136 YDL+R G PR SPRQSDVMIVAGTLTNKMA ALRRVYDQM EPR+VISMGSCANGGGYY Sbjct: 83 YDLDRMGIIPRGSPRQSDVMIVAGTLTNKMAPALRRVYDQMAEPRWVISMGSCANGGGYY 142 Query: 137 HYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 HYSYSVVRGCDRIVPVD+YVPGCPPTAEALIYGIL LQKKIRR G + Sbjct: 143 HYSYSVVRGCDRIVPVDVYVPGCPPTAEALIYGILQLQKKIRRTGTI 189 >gi|240850584|ref|YP_002971984.1| NADH dehydrogenase I subunit B [Bartonella grahamii as4aup] gi|240267707|gb|ACS51295.1| NADH dehydrogenase I subunit B [Bartonella grahamii as4aup] Length = 193 Score = 256 bits (655), Expect = 8e-67, Method: Composition-based stats. Identities = 137/180 (76%), Positives = 155/180 (86%) Query: 5 TVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLAC 64 + II + + D F +++E++ KGFLVTS D L+TWARTGSLMWM+FGLAC Sbjct: 13 PKPKGIIDPNTGELIGSDDKFFRDLNAELSDKGFLVTSADALITWARTGSLMWMSFGLAC 72 Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 CA+EMMQ SMP YD ERFG+APRASPRQSDVM+VAGTLTNKMA ALR+VYDQMPEPRYVI Sbjct: 73 CAIEMMQCSMPHYDNERFGYAPRASPRQSDVMVVAGTLTNKMAPALRKVYDQMPEPRYVI 132 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGILLLQKKIRR G+++ Sbjct: 133 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILLLQKKIRRTGSIE 192 >gi|209885052|ref|YP_002288909.1| NADH-quinone oxidoreductase subunit b 1 [Oligotropha carboxidovorans OM5] gi|238065186|sp|B6JGW0|NUOB_OLICO RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|209873248|gb|ACI93044.1| NADH-quinone oxidoreductase subunit b 1 [Oligotropha carboxidovorans OM5] Length = 198 Score = 256 bits (655), Expect = 8e-67, Method: Composition-based stats. Identities = 137/182 (75%), Positives = 156/182 (85%) Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62 ++ ++ ++ + D F I+ E++ KGF V + D L+TWARTGSLMWMTFGL Sbjct: 16 VSQPATGVLDPRTGQPVGADDRYFLEINHELSDKGFFVAAADDLITWARTGSLMWMTFGL 75 Query: 63 ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122 ACCAVEMMQ SMPRYD+ERFGFAPRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRY Sbjct: 76 ACCAVEMMQVSMPRYDVERFGFAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRY 135 Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG+LLLQKKIRR+G Sbjct: 136 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGVLLLQKKIRRIGT 195 Query: 183 VK 184 ++ Sbjct: 196 IE 197 >gi|71083583|ref|YP_266302.1| NADH dehydrogenase subunit B [Candidatus Pelagibacter ubique HTCC1062] gi|91761996|ref|ZP_01263961.1| NADH dehydrogenase beta subunit [Candidatus Pelagibacter ubique HTCC1002] gi|123646646|sp|Q4FM90|NUOB_PELUB RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|71062696|gb|AAZ21699.1| NADH Dehydrogenase I Chain B [Candidatus Pelagibacter ubique HTCC1062] gi|91717798|gb|EAS84448.1| NADH dehydrogenase beta subunit [Candidatus Pelagibacter ubique HTCC1002] Length = 173 Score = 256 bits (655), Expect = 8e-67, Method: Composition-based stats. Identities = 125/165 (75%), Positives = 145/165 (87%) Query: 20 EKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDL 79 +++ +F +++ + + GF+ TS+D L+ W+R GSL WMTFGLACCAVEMMQ +MPRYDL Sbjct: 8 KEIPEEFKKLAEDFSKNGFITTSLDNLINWSRAGSLHWMTFGLACCAVEMMQTAMPRYDL 67 Query: 80 ERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS 139 ERFG APR SPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYS Sbjct: 68 ERFGAAPRGSPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYS 127 Query: 140 YSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 YSVVRGCD+IVPVDIYVPGCPP+AEAL+YGIL LQKKIR G+ + Sbjct: 128 YSVVRGCDKIVPVDIYVPGCPPSAEALLYGILQLQKKIRNKGSFE 172 >gi|159043857|ref|YP_001532651.1| NADH dehydrogenase subunit B [Dinoroseobacter shibae DFL 12] gi|218527990|sp|A8LIT6|NUOB_DINSH RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|157911617|gb|ABV93050.1| NADH-quinone oxidoreductase [Dinoroseobacter shibae DFL 12] Length = 177 Score = 256 bits (655), Expect = 9e-67, Method: Composition-based stats. Identities = 127/155 (81%), Positives = 141/155 (90%) Query: 29 ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88 +++E+ KGFL+TS + ++ WARTGSL WMTFGLACCAVEMM SMPRYD ERFG APRA Sbjct: 21 LNNELQDKGFLLTSTEDIINWARTGSLHWMTFGLACCAVEMMHTSMPRYDAERFGIAPRA 80 Query: 89 SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 148 SPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR Sbjct: 81 SPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 140 Query: 149 IVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 +VPVDIYVPGCPPTAEAL+YG+L LQ+KIRR G + Sbjct: 141 VVPVDIYVPGCPPTAEALLYGLLQLQRKIRRTGTI 175 >gi|163868372|ref|YP_001609581.1| NADH dehydrogenase subunit B [Bartonella tribocorum CIP 105476] gi|238055237|sp|A9IUQ3|NUOB_BART1 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|161018028|emb|CAK01586.1| NADH dehydrogenase I, B subunit [Bartonella tribocorum CIP 105476] Length = 193 Score = 256 bits (654), Expect = 1e-66, Method: Composition-based stats. Identities = 138/180 (76%), Positives = 155/180 (86%) Query: 5 TVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLAC 64 + II + + D F I++E++ KGFLVTS D L+TWARTGSLMWM+FGLAC Sbjct: 13 PKPKGIIDPNTGELIGSDDRFFRDINAELSDKGFLVTSADALITWARTGSLMWMSFGLAC 72 Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 CA+EMMQ SMP YD ERFG+APRASPRQSDVM+VAGTLTNKMA ALR+VYDQMPEPRYVI Sbjct: 73 CAIEMMQCSMPHYDNERFGYAPRASPRQSDVMVVAGTLTNKMAPALRKVYDQMPEPRYVI 132 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGILLLQKKIRR G+++ Sbjct: 133 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILLLQKKIRRTGSIE 192 >gi|260434181|ref|ZP_05788152.1| NADH-quinone oxidoreductase, b subunit [Silicibacter lacuscaerulensis ITI-1157] gi|260418009|gb|EEX11268.1| NADH-quinone oxidoreductase, b subunit [Silicibacter lacuscaerulensis ITI-1157] Length = 174 Score = 256 bits (654), Expect = 1e-66, Method: Composition-based stats. Identities = 130/173 (75%), Positives = 150/173 (86%), Gaps = 1/173 (0%) Query: 11 ISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMM 70 ++G ++ ++K + +++E+ KGFL+TS + ++ WARTGSL WMTFGLACCAVEMM Sbjct: 1 MTGANTAGVDK-EVATQALNAELQDKGFLLTSTEDIINWARTGSLHWMTFGLACCAVEMM 59 Query: 71 QASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCA 130 SMPRYD ERFG APRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCA Sbjct: 60 HTSMPRYDAERFGIAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCA 119 Query: 131 NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG+L LQ+KIRR G + Sbjct: 120 NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGLLQLQRKIRRTGTI 172 >gi|56697623|ref|YP_167992.1| NADH dehydrogenase subunit B [Ruegeria pomeroyi DSS-3] gi|56679360|gb|AAV96026.1| NADH dehydrogenase I, B subunit [Ruegeria pomeroyi DSS-3] Length = 184 Score = 256 bits (654), Expect = 1e-66, Method: Composition-based stats. Identities = 130/174 (74%), Positives = 151/174 (86%), Gaps = 1/174 (0%) Query: 10 IISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEM 69 +++G ++ ++K + +++E+ KGFL+TS + ++ WARTGSL WMTFGLACCAVEM Sbjct: 10 VMTGANTAGVDK-EVATQALNAELQDKGFLLTSTEDIINWARTGSLHWMTFGLACCAVEM 68 Query: 70 MQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSC 129 M SMPRYD ERFG APRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSC Sbjct: 69 MHTSMPRYDAERFGIAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSC 128 Query: 130 ANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 ANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG+L LQ+KIRR G + Sbjct: 129 ANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGLLQLQRKIRRTGTI 182 >gi|85717029|ref|ZP_01047991.1| NADH dehydrogenase beta subunit [Nitrobacter sp. Nb-311A] gi|85696153|gb|EAQ34049.1| NADH dehydrogenase beta subunit [Nitrobacter sp. Nb-311A] Length = 200 Score = 256 bits (654), Expect = 1e-66, Method: Composition-based stats. Identities = 139/180 (77%), Positives = 154/180 (85%) Query: 5 TVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLAC 64 I+ + S+ D F ++ E++ KGF V + D L+TWARTGSLMWMTFGLAC Sbjct: 20 PAGTSILDPGTGRSVGAGDPYFLEVNHELSDKGFFVAAADDLITWARTGSLMWMTFGLAC 79 Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 CAVEMMQ SMPRYD+ERFGFAPRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVI Sbjct: 80 CAVEMMQVSMPRYDVERFGFAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVI 139 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 SMGSCANGGGYYHYSYSVVRGCDRIVPVD+YVPGCPPTAEAL+YGILLLQKKIRRVG ++ Sbjct: 140 SMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALLYGILLLQKKIRRVGTIE 199 >gi|67458958|ref|YP_246582.1| NADH dehydrogenase subunit B [Rickettsia felis URRWXCal2] gi|75536604|sp|Q4UM06|NUOB_RICFE RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|67004491|gb|AAY61417.1| NADH dehydrogenase I chain B [Rickettsia felis URRWXCal2] Length = 174 Score = 256 bits (654), Expect = 1e-66, Method: Composition-based stats. Identities = 113/158 (71%), Positives = 136/158 (86%) Query: 27 SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP 86 +++E++++GFL+T VD ++ WAR SL MTFGLACCAVEMMQA+ RYD++RFG Sbjct: 10 ELLNNELSNRGFLLTKVDDVIGWARANSLWPMTFGLACCAVEMMQAAASRYDMDRFGMLF 69 Query: 87 RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGC 146 R SPRQSD+MIVAGTLTNKMA ALR+VYDQM EP++V+SMGSCANGGGYYH+SYSVVRGC Sbjct: 70 RPSPRQSDLMIVAGTLTNKMAPALRKVYDQMAEPKWVLSMGSCANGGGYYHFSYSVVRGC 129 Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 DRIVPVD+YVPGCPPTAEALIYG++ LQKKI+R K Sbjct: 130 DRIVPVDVYVPGCPPTAEALIYGLMQLQKKIKRTTGFK 167 >gi|218528064|sp|Q5LPR4|NUOB_SILPO RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B Length = 177 Score = 256 bits (654), Expect = 1e-66, Method: Composition-based stats. Identities = 130/174 (74%), Positives = 151/174 (86%), Gaps = 1/174 (0%) Query: 10 IISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEM 69 +++G ++ ++K + +++E+ KGFL+TS + ++ WARTGSL WMTFGLACCAVEM Sbjct: 3 VMTGANTAGVDK-EVATQALNAELQDKGFLLTSTEDIINWARTGSLHWMTFGLACCAVEM 61 Query: 70 MQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSC 129 M SMPRYD ERFG APRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSC Sbjct: 62 MHTSMPRYDAERFGIAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSC 121 Query: 130 ANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 ANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG+L LQ+KIRR G + Sbjct: 122 ANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGLLQLQRKIRRTGTI 175 >gi|15892407|ref|NP_360121.1| NADH dehydrogenase subunit B [Rickettsia conorii str. Malish 7] gi|34580591|ref|ZP_00142071.1| NADH dehydrogenase I chain B [Rickettsia sibirica 246] gi|157828358|ref|YP_001494600.1| NADH dehydrogenase subunit B [Rickettsia rickettsii str. 'Sheila Smith'] gi|165933066|ref|YP_001649855.1| NADH dehydrogenase subunit B [Rickettsia rickettsii str. Iowa] gi|238651035|ref|YP_002916892.1| NADH dehydrogenase subunit B [Rickettsia peacockii str. Rustic] gi|20139043|sp|Q92ID6|NUOB_RICCN RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|218528020|sp|B0BX73|NUOB_RICRO RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|218528021|sp|A8GRR7|NUOB_RICRS RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|259514688|sp|C4K2P3|NUOB_RICPU RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|15619558|gb|AAL03022.1| NADH dehydrogenase I chain B [Rickettsia conorii str. Malish 7] gi|28261976|gb|EAA25480.1| NADH dehydrogenase I chain B [Rickettsia sibirica 246] gi|157800839|gb|ABV76092.1| NADH dehydrogenase subunit B [Rickettsia rickettsii str. 'Sheila Smith'] gi|165908153|gb|ABY72449.1| NADH-quinone oxidoreductase chain B [Rickettsia rickettsii str. Iowa] gi|238625133|gb|ACR47839.1| NADH dehydrogenase subunit B [Rickettsia peacockii str. Rustic] Length = 174 Score = 256 bits (654), Expect = 1e-66, Method: Composition-based stats. Identities = 114/158 (72%), Positives = 136/158 (86%) Query: 27 SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP 86 +S+E++++GFL+T VD ++ WAR SL MTFGLACCAVEMMQA+ RYD++RFG Sbjct: 10 ELLSNELSNRGFLLTKVDDVIGWARANSLWPMTFGLACCAVEMMQAAASRYDMDRFGMLF 69 Query: 87 RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGC 146 R SPRQSD+MIVAGTLTNKMA ALR+VYDQM EP++V+SMGSCANGGGYYH+SYSVVRGC Sbjct: 70 RPSPRQSDLMIVAGTLTNKMAPALRKVYDQMAEPKWVLSMGSCANGGGYYHFSYSVVRGC 129 Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 DRIVPVD+YVPGCPPTAEALIYG++ LQKKI+R K Sbjct: 130 DRIVPVDVYVPGCPPTAEALIYGLMQLQKKIKRTTGFK 167 >gi|163738798|ref|ZP_02146212.1| NADH dehydrogenase subunit B [Phaeobacter gallaeciensis BS107] gi|163741491|ref|ZP_02148882.1| NADH dehydrogenase subunit B [Phaeobacter gallaeciensis 2.10] gi|161385225|gb|EDQ09603.1| NADH dehydrogenase subunit B [Phaeobacter gallaeciensis 2.10] gi|161388126|gb|EDQ12481.1| NADH dehydrogenase subunit B [Phaeobacter gallaeciensis BS107] Length = 174 Score = 256 bits (654), Expect = 1e-66, Method: Composition-based stats. Identities = 127/173 (73%), Positives = 150/173 (86%), Gaps = 1/173 (0%) Query: 11 ISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMM 70 ++G ++ ++K + +++E+ KGFL+TS + ++ WARTGSL WMTFGLACCAVEMM Sbjct: 1 MTGANTAGVDK-EVVTQALNAELQDKGFLLTSAEDIINWARTGSLHWMTFGLACCAVEMM 59 Query: 71 QASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCA 130 SMPRYD ERFG APRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCA Sbjct: 60 HTSMPRYDAERFGIAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCA 119 Query: 131 NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 NGGGYYHYSYSVVRGCDR+VPVD+YVPGCPPTAEAL+YG++ LQ+KIRR G + Sbjct: 120 NGGGYYHYSYSVVRGCDRVVPVDVYVPGCPPTAEALLYGLMQLQRKIRRTGTL 172 >gi|114764719|ref|ZP_01443904.1| NADH dehydrogenase beta subunit [Pelagibaca bermudensis HTCC2601] gi|114542919|gb|EAU45940.1| NADH dehydrogenase beta subunit [Roseovarius sp. HTCC2601] Length = 206 Score = 256 bits (654), Expect = 1e-66, Method: Composition-based stats. Identities = 128/176 (72%), Positives = 148/176 (84%) Query: 8 QKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAV 67 ++ + + + ++ E++ KGFL+TSVD ++ WARTGSL WMTFGLACCA+ Sbjct: 29 SSPVAYGTYRAGGDQEVATQALNRELSDKGFLLTSVDDVINWARTGSLHWMTFGLACCAI 88 Query: 68 EMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMG 127 EMM SMPRYDLERFG APRASPRQSD+MIVAGTLTNKMA ALR+VYDQMPEPRYVISMG Sbjct: 89 EMMHTSMPRYDLERFGSAPRASPRQSDLMIVAGTLTNKMAPALRKVYDQMPEPRYVISMG 148 Query: 128 SCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 SCANGGGYYHYSYSVVRGCDRIVPVD+YVPGCPPTAEAL+YG++ LQKKIRR G + Sbjct: 149 SCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALLYGLMALQKKIRRTGTI 204 >gi|299135032|ref|ZP_07028223.1| NADH-quinone oxidoreductase, B subunit [Afipia sp. 1NLS2] gi|298590009|gb|EFI50213.1| NADH-quinone oxidoreductase, B subunit [Afipia sp. 1NLS2] Length = 197 Score = 256 bits (653), Expect = 1e-66, Method: Composition-based stats. Identities = 137/182 (75%), Positives = 155/182 (85%) Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62 ++ ++ ++ + D F I+ E++ KGF V + D L+TWARTGSLMWMTFGL Sbjct: 15 ISQPATGVLDPRTGQPVGADDRYFLEINHELSDKGFFVAAADDLITWARTGSLMWMTFGL 74 Query: 63 ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122 ACCAVEMMQ SMPRYD+ERFGFAPRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRY Sbjct: 75 ACCAVEMMQVSMPRYDVERFGFAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRY 134 Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG+LLLQKKIRR G Sbjct: 135 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGVLLLQKKIRRTGT 194 Query: 183 VK 184 ++ Sbjct: 195 IE 196 >gi|229586623|ref|YP_002845124.1| NADH dehydrogenase subunit B [Rickettsia africae ESF-5] gi|259514686|sp|C3PN71|NUOB_RICAE RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|228021673|gb|ACP53381.1| NADH dehydrogenase I chain B [Rickettsia africae ESF-5] Length = 174 Score = 256 bits (653), Expect = 1e-66, Method: Composition-based stats. Identities = 114/158 (72%), Positives = 136/158 (86%) Query: 27 SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP 86 +S+E++++GFL+T VD ++ WAR SL MTFGLACCAVEMMQA+ RYD++RFG Sbjct: 10 ELLSNELSNRGFLLTKVDDVIGWARANSLWPMTFGLACCAVEMMQAAASRYDMDRFGMLF 69 Query: 87 RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGC 146 R SPRQSD+MIVAGTLTNKMA ALR+VYDQM EP++V+SMGSCANGGGYYH+SYSVVRGC Sbjct: 70 RPSPRQSDLMIVAGTLTNKMAPALRKVYDQMTEPKWVLSMGSCANGGGYYHFSYSVVRGC 129 Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 DRIVPVD+YVPGCPPTAEALIYG++ LQKKI+R K Sbjct: 130 DRIVPVDVYVPGCPPTAEALIYGLMQLQKKIKRTTGFK 167 >gi|182679352|ref|YP_001833498.1| NADH-quinone oxidoreductase, B subunit [Beijerinckia indica subsp. indica ATCC 9039] gi|238055244|sp|B2IHW6|NUOB_BEII9 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|182635235|gb|ACB96009.1| NADH-quinone oxidoreductase, B subunit [Beijerinckia indica subsp. indica ATCC 9039] Length = 180 Score = 256 bits (653), Expect = 1e-66, Method: Composition-based stats. Identities = 140/184 (76%), Positives = 154/184 (83%), Gaps = 5/184 (2%) Query: 1 MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTF 60 MGL Q ++ + D F I+ ++ KGFLVTS D+L+ WARTGSLMWMTF Sbjct: 1 MGLIATPQPVVGTPPAQ-----DNYFLSINDQLADKGFLVTSTDELINWARTGSLMWMTF 55 Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 GLACCAVEMMQ SMPRYD ERFGFAPR SPRQSDVMIVAGTLTNKMA ALR+VYDQMPEP Sbjct: 56 GLACCAVEMMQMSMPRYDCERFGFAPRGSPRQSDVMIVAGTLTNKMAPALRKVYDQMPEP 115 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP+AEAL+YG+LLLQKKIRR Sbjct: 116 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPSAEALLYGVLLLQKKIRRT 175 Query: 181 GNVK 184 G ++ Sbjct: 176 GTIE 179 >gi|254486398|ref|ZP_05099603.1| NADH-quinone oxidoreductase chain b [Roseobacter sp. GAI101] gi|214043267|gb|EEB83905.1| NADH-quinone oxidoreductase chain b [Roseobacter sp. GAI101] Length = 178 Score = 256 bits (653), Expect = 1e-66, Method: Composition-based stats. Identities = 130/161 (80%), Positives = 142/161 (88%) Query: 23 DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82 D ++ E+ KGFL+TS + ++ WARTGSL WMTFGLACCAVEMM SMPRYDLERF Sbjct: 16 DVATQNLNKELQDKGFLLTSTEDIINWARTGSLHWMTFGLACCAVEMMHTSMPRYDLERF 75 Query: 83 GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142 G APRASPRQSD+MIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSV Sbjct: 76 GTAPRASPRQSDLMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSV 135 Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 VRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQ+KIRR G + Sbjct: 136 VRGCDRIVPVDIYVPGCPPTAEALLYGILQLQRKIRRTGTI 176 >gi|91205212|ref|YP_537567.1| NADH dehydrogenase subunit B [Rickettsia bellii RML369-C] gi|122425872|sp|Q1RJI6|NUOB_RICBR RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|91068756|gb|ABE04478.1| NADH dehydrogenase I chain B [Rickettsia bellii RML369-C] Length = 174 Score = 256 bits (653), Expect = 1e-66, Method: Composition-based stats. Identities = 112/158 (70%), Positives = 136/158 (86%) Query: 27 SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP 86 +++E++++G L+T VD ++ WAR+ SL MTFGLACCAVEMMQA+ RYD++RFG Sbjct: 10 ELLNNELSNRGVLLTKVDDVIGWARSNSLWPMTFGLACCAVEMMQAAASRYDMDRFGMLF 69 Query: 87 RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGC 146 R SPRQSD+MIVAGTLTNKMA ALR+VYDQM EP++V+SMGSCANGGGYYH+SYSVVRGC Sbjct: 70 RPSPRQSDLMIVAGTLTNKMAPALRKVYDQMAEPKWVLSMGSCANGGGYYHFSYSVVRGC 129 Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 DRIVPVD+YVPGCPPTAEALIYG++ LQKKI+R K Sbjct: 130 DRIVPVDVYVPGCPPTAEALIYGLMQLQKKIKRTTGFK 167 >gi|126740377|ref|ZP_01756065.1| NADH dehydrogenase subunit B [Roseobacter sp. SK209-2-6] gi|126718513|gb|EBA15227.1| NADH dehydrogenase subunit B [Roseobacter sp. SK209-2-6] Length = 174 Score = 256 bits (653), Expect = 1e-66, Method: Composition-based stats. Identities = 128/173 (73%), Positives = 150/173 (86%), Gaps = 1/173 (0%) Query: 11 ISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMM 70 ++G ++ ++K + I++E+ KGFL+TS + ++ WARTGSL WMTFGLACCAVEMM Sbjct: 1 MTGANTAGVDK-EVVTQAINAELQDKGFLLTSAEDIINWARTGSLHWMTFGLACCAVEMM 59 Query: 71 QASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCA 130 SMPRYD ERFG APRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCA Sbjct: 60 HTSMPRYDAERFGIAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCA 119 Query: 131 NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 NGGGYYHYSYSVVRGCDR+VPVD+YVPGCPPTAEAL+YG++ LQ+KIRR G + Sbjct: 120 NGGGYYHYSYSVVRGCDRVVPVDVYVPGCPPTAEALLYGLMQLQRKIRRTGTL 172 >gi|27380029|ref|NP_771558.1| NADH dehydrogenase subunit B [Bradyrhizobium japonicum USDA 110] gi|81736772|sp|Q89KI7|NUOB_BRAJA RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|27353183|dbj|BAC50183.1| NADH ubiqionone oxidoreductase chain B [Bradyrhizobium japonicum USDA 110] Length = 202 Score = 256 bits (653), Expect = 2e-66, Method: Composition-based stats. Identities = 138/182 (75%), Positives = 155/182 (85%) Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62 L + I+ + + D F ++SE++ KGF V + D L+TWARTGSLMWMTFGL Sbjct: 20 LAPAPKGILDPSTGKPVGANDPFFLEVNSELSDKGFFVAATDDLITWARTGSLMWMTFGL 79 Query: 63 ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122 ACCAVEMMQ SMPRYD+ERFGFAPRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRY Sbjct: 80 ACCAVEMMQVSMPRYDVERFGFAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRY 139 Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182 VISMGSCANGGGYYHYSYSVVRGCDRIVP+DIYVPGCPPTAEAL+YG+LLLQKKIRR G Sbjct: 140 VISMGSCANGGGYYHYSYSVVRGCDRIVPIDIYVPGCPPTAEALLYGVLLLQKKIRRTGT 199 Query: 183 VK 184 ++ Sbjct: 200 IE 201 >gi|157964436|ref|YP_001499260.1| NADH dehydrogenase subunit B [Rickettsia massiliae MTU5] gi|218528019|sp|A8F1C7|NUOB_RICM5 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|157844212|gb|ABV84713.1| NADH dehydrogenase I chain B [Rickettsia massiliae MTU5] Length = 174 Score = 256 bits (653), Expect = 2e-66, Method: Composition-based stats. Identities = 114/158 (72%), Positives = 136/158 (86%) Query: 27 SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP 86 +S+E++++GFL+T VD ++ WAR SL MTFGLACCAVEMMQA+ RYD++RFG Sbjct: 10 ELLSNELSNRGFLLTKVDNVIGWARANSLWPMTFGLACCAVEMMQAAASRYDMDRFGMLF 69 Query: 87 RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGC 146 R SPRQSD+MIVAGTLTNKMA ALR+VYDQM EP++V+SMGSCANGGGYYH+SYSVVRGC Sbjct: 70 RPSPRQSDLMIVAGTLTNKMAPALRKVYDQMAEPKWVLSMGSCANGGGYYHFSYSVVRGC 129 Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 DRIVPVD+YVPGCPPTAEALIYG++ LQKKI+R K Sbjct: 130 DRIVPVDVYVPGCPPTAEALIYGLMQLQKKIKRTTGFK 167 >gi|259418740|ref|ZP_05742657.1| NADH-quinone oxidoreductase subunit b [Silicibacter sp. TrichCH4B] gi|259344962|gb|EEW56816.1| NADH-quinone oxidoreductase subunit b [Silicibacter sp. TrichCH4B] Length = 177 Score = 255 bits (652), Expect = 2e-66, Method: Composition-based stats. Identities = 129/175 (73%), Positives = 151/175 (86%), Gaps = 1/175 (0%) Query: 9 KIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVE 68 +++G ++ ++K + +++E+ KGFL+TS + ++ WARTGSL WMTFGLACCAVE Sbjct: 2 GVMAGANTAGVDK-EVVTQALNAELQDKGFLLTSAEDIINWARTGSLHWMTFGLACCAVE 60 Query: 69 MMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGS 128 MM SMPRYD ERFG APRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGS Sbjct: 61 MMHTSMPRYDAERFGIAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGS 120 Query: 129 CANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 CANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG++ LQ+KIRR G + Sbjct: 121 CANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGLMQLQRKIRRTGTL 175 >gi|83942674|ref|ZP_00955135.1| NADH dehydrogenase beta subunit [Sulfitobacter sp. EE-36] gi|83953913|ref|ZP_00962634.1| NADH dehydrogenase beta subunit [Sulfitobacter sp. NAS-14.1] gi|83841858|gb|EAP81027.1| NADH dehydrogenase beta subunit [Sulfitobacter sp. NAS-14.1] gi|83846767|gb|EAP84643.1| NADH dehydrogenase beta subunit [Sulfitobacter sp. EE-36] Length = 178 Score = 255 bits (652), Expect = 2e-66, Method: Composition-based stats. Identities = 127/161 (78%), Positives = 142/161 (88%) Query: 23 DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82 D ++ E+ KGFL+TS + ++ WARTGSL WMTFGLACCAVEMM SMPRYDLERF Sbjct: 16 DVATQNLNKELQDKGFLLTSTEDIINWARTGSLHWMTFGLACCAVEMMHTSMPRYDLERF 75 Query: 83 GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142 G APRASPRQSD+MIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSV Sbjct: 76 GTAPRASPRQSDLMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSV 135 Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 VRGCDR+VPVD+YVPGCPPTAEAL+YGI+ LQ+KIRR G + Sbjct: 136 VRGCDRVVPVDVYVPGCPPTAEALLYGIMQLQRKIRRTGTI 176 >gi|86137600|ref|ZP_01056177.1| NADH dehydrogenase beta subunit [Roseobacter sp. MED193] gi|85825935|gb|EAQ46133.1| NADH dehydrogenase beta subunit [Roseobacter sp. MED193] Length = 174 Score = 255 bits (652), Expect = 2e-66, Method: Composition-based stats. Identities = 129/173 (74%), Positives = 150/173 (86%), Gaps = 1/173 (0%) Query: 11 ISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMM 70 ++G ++ ++K + +++E+ KGFL+TS + ++ WARTGSL WMTFGLACCAVEMM Sbjct: 1 MTGANTAGVDK-EVVTQALNAELQDKGFLLTSTEDIINWARTGSLHWMTFGLACCAVEMM 59 Query: 71 QASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCA 130 SMPRYD ERFG APRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCA Sbjct: 60 HTSMPRYDAERFGIAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCA 119 Query: 131 NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG++ LQ+KIRR G + Sbjct: 120 NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGLMQLQRKIRRTGTL 172 >gi|254511808|ref|ZP_05123875.1| NADH dehydrogenase i, b subunit [Rhodobacteraceae bacterium KLH11] gi|221535519|gb|EEE38507.1| NADH dehydrogenase i, b subunit [Rhodobacteraceae bacterium KLH11] Length = 174 Score = 255 bits (652), Expect = 2e-66, Method: Composition-based stats. Identities = 129/173 (74%), Positives = 150/173 (86%), Gaps = 1/173 (0%) Query: 11 ISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMM 70 ++G ++ ++K + +++E+ KGFL+TS + ++ WARTGSL WMTFGLACCAVEMM Sbjct: 1 MTGANTAGVDK-EVATQALNAELQDKGFLLTSTEDIINWARTGSLHWMTFGLACCAVEMM 59 Query: 71 QASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCA 130 SMPRYD ERFG APRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCA Sbjct: 60 HTSMPRYDAERFGIAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCA 119 Query: 131 NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG++ LQ+KIRR G + Sbjct: 120 NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGLMQLQRKIRRTGTI 172 >gi|86749691|ref|YP_486187.1| NADH dehydrogenase subunit B [Rhodopseudomonas palustris HaA2] gi|86572719|gb|ABD07276.1| NADH-quinone oxidoreductase, B subunit [Rhodopseudomonas palustris HaA2] Length = 204 Score = 255 bits (652), Expect = 2e-66, Method: Composition-based stats. Identities = 137/182 (75%), Positives = 152/182 (83%) Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62 + II + + D F ++ E++ KGF V + D L+TWARTGSLMWMTFGL Sbjct: 22 IARAPSGIIDPNTGKPVGADDPFFLDVNRELSDKGFFVAATDDLITWARTGSLMWMTFGL 81 Query: 63 ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122 ACCAVEMMQ SMPRYD ERFGFAPRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRY Sbjct: 82 ACCAVEMMQLSMPRYDAERFGFAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRY 141 Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG++LLQKKIRR G Sbjct: 142 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGVMLLQKKIRRTGT 201 Query: 183 VK 184 ++ Sbjct: 202 IE 203 >gi|330994055|ref|ZP_08317985.1| NADH-quinone oxidoreductase subunit B 2 [Gluconacetobacter sp. SXCC-1] gi|329759001|gb|EGG75515.1| NADH-quinone oxidoreductase subunit B 2 [Gluconacetobacter sp. SXCC-1] Length = 192 Score = 255 bits (652), Expect = 2e-66, Method: Composition-based stats. Identities = 127/168 (75%), Positives = 141/168 (83%) Query: 17 CSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPR 76 + DA I+ E+T KGF+V ++D+LV W RTGSL M+FGLACCAVEM+ A MPR Sbjct: 23 PPGPEQDAVIKGITGEMTEKGFVVANLDRLVNWGRTGSLWPMSFGLACCAVEMIHAYMPR 82 Query: 77 YDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY 136 YDL+R G PR SPRQSDVMIVAGTLTNKMA ALRRVYDQM EPR+VISMGSCANGGGYY Sbjct: 83 YDLDRMGIIPRGSPRQSDVMIVAGTLTNKMAPALRRVYDQMAEPRWVISMGSCANGGGYY 142 Query: 137 HYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 HYSYSVVRGCDRIVPVD+YVPGCPPTAEALIYGIL LQKKIRR G ++ Sbjct: 143 HYSYSVVRGCDRIVPVDVYVPGCPPTAEALIYGILQLQKKIRRTGTIR 190 >gi|254476799|ref|ZP_05090185.1| NADH-quinone oxidoreductase chain b [Ruegeria sp. R11] gi|214031042|gb|EEB71877.1| NADH-quinone oxidoreductase chain b [Ruegeria sp. R11] Length = 177 Score = 255 bits (652), Expect = 2e-66, Method: Composition-based stats. Identities = 127/175 (72%), Positives = 151/175 (86%), Gaps = 1/175 (0%) Query: 9 KIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVE 68 +++G ++ ++K + +++E+ KGFL+TS + ++ WARTGSL WMTFGLACCAVE Sbjct: 2 GVMTGANTAGVDK-EMVTQALNAELQDKGFLLTSAEDIINWARTGSLHWMTFGLACCAVE 60 Query: 69 MMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGS 128 MM SMPRYD ERFG APRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGS Sbjct: 61 MMHTSMPRYDAERFGIAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGS 120 Query: 129 CANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 CANGGGYYHYSYSVVRGCDR+VPVD+YVPGCPPTAEAL+YG++ LQ+KIRR G + Sbjct: 121 CANGGGYYHYSYSVVRGCDRVVPVDVYVPGCPPTAEALLYGLMQLQRKIRRTGTL 175 >gi|163746197|ref|ZP_02153556.1| NADH dehydrogenase subunit B [Oceanibulbus indolifex HEL-45] gi|161380942|gb|EDQ05352.1| NADH dehydrogenase subunit B [Oceanibulbus indolifex HEL-45] Length = 204 Score = 255 bits (652), Expect = 2e-66, Method: Composition-based stats. Identities = 129/161 (80%), Positives = 144/161 (89%) Query: 23 DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82 D +++E+ KGFL+TS + ++ WARTGSL WMTFGLACCAVEMM +SMPRYDLERF Sbjct: 42 DVATHSLNAELQDKGFLLTSTEDIINWARTGSLHWMTFGLACCAVEMMHSSMPRYDLERF 101 Query: 83 GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142 G APRASPRQSD+MIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSV Sbjct: 102 GTAPRASPRQSDLMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSV 161 Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 VRGCDRIVPVD+YVPGCPPTAEAL+YGIL LQ+KIRR G + Sbjct: 162 VRGCDRIVPVDVYVPGCPPTAEALLYGILQLQRKIRRTGTI 202 >gi|91977356|ref|YP_570015.1| NADH dehydrogenase subunit B [Rhodopseudomonas palustris BisB5] gi|122969140|sp|Q135X5|NUOB2_RHOPS RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName: Full=NADH dehydrogenase I subunit B 2; AltName: Full=NDH-1 subunit B 2 gi|91683812|gb|ABE40114.1| NADH-quinone oxidoreductase, B subunit [Rhodopseudomonas palustris BisB5] Length = 199 Score = 255 bits (652), Expect = 2e-66, Method: Composition-based stats. Identities = 136/182 (74%), Positives = 152/182 (83%) Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62 + II + + D F ++ E++ KGF V + D L+TWARTGSLMWMTFGL Sbjct: 17 IARAPSGIIDPNTGKPVGADDPFFLGVNRELSDKGFFVAATDDLITWARTGSLMWMTFGL 76 Query: 63 ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122 ACCAVEMMQ SMPRYD ERFGFAPRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRY Sbjct: 77 ACCAVEMMQLSMPRYDAERFGFAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRY 136 Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182 VISMGSCANGGGYYHYSYSVVRGCDRIVP+DIYVPGCPPTAEAL+YG++LLQKKIRR G Sbjct: 137 VISMGSCANGGGYYHYSYSVVRGCDRIVPIDIYVPGCPPTAEALLYGVMLLQKKIRRTGT 196 Query: 183 VK 184 ++ Sbjct: 197 IE 198 >gi|239947491|ref|ZP_04699244.1| NADH-quinone oxidoreductase subunit B [Rickettsia endosymbiont of Ixodes scapularis] gi|239921767|gb|EER21791.1| NADH-quinone oxidoreductase subunit B [Rickettsia endosymbiont of Ixodes scapularis] Length = 187 Score = 255 bits (652), Expect = 2e-66, Method: Composition-based stats. Identities = 114/158 (72%), Positives = 135/158 (85%) Query: 27 SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP 86 ++ E++++GFL+T VD ++ WART SL MTFGLACCAVEMMQA+ RYD++RFG Sbjct: 23 ELLNHELSNRGFLLTKVDDVIGWARTNSLWPMTFGLACCAVEMMQAAASRYDMDRFGMLF 82 Query: 87 RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGC 146 R SPRQSD+MIVAGTLTNKMA ALR+VYDQM EP++V+SMGSCANGGGYYH+SYSVVRGC Sbjct: 83 RPSPRQSDLMIVAGTLTNKMAPALRKVYDQMAEPKWVLSMGSCANGGGYYHFSYSVVRGC 142 Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 DRIVPVDIYVPGCPPTAE LIYG++ LQKKI+R K Sbjct: 143 DRIVPVDIYVPGCPPTAETLIYGLMQLQKKIKRTTGFK 180 >gi|254465701|ref|ZP_05079112.1| NADH-quinone oxidoreductase chain b [Rhodobacterales bacterium Y4I] gi|206686609|gb|EDZ47091.1| NADH-quinone oxidoreductase chain b [Rhodobacterales bacterium Y4I] Length = 174 Score = 255 bits (651), Expect = 2e-66, Method: Composition-based stats. Identities = 127/173 (73%), Positives = 150/173 (86%), Gaps = 1/173 (0%) Query: 11 ISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMM 70 ++G ++ ++K + +++E+ KGFL+TS + ++ WARTGSL WMTFGLACCAVEMM Sbjct: 1 MTGANTAGVDK-EVVTRALNAELQDKGFLLTSAEDIINWARTGSLHWMTFGLACCAVEMM 59 Query: 71 QASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCA 130 SMPRYD ERFG APRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCA Sbjct: 60 HTSMPRYDAERFGIAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCA 119 Query: 131 NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 NGGGYYHYSYSVVRGCDR+VPVD+YVPGCPPTAEAL+YG++ LQ+KIRR G + Sbjct: 120 NGGGYYHYSYSVVRGCDRVVPVDVYVPGCPPTAEALLYGLMQLQRKIRRTGTL 172 >gi|296444795|ref|ZP_06886758.1| NADH-quinone oxidoreductase, B subunit [Methylosinus trichosporium OB3b] gi|296257743|gb|EFH04807.1| NADH-quinone oxidoreductase, B subunit [Methylosinus trichosporium OB3b] Length = 194 Score = 255 bits (651), Expect = 2e-66, Method: Composition-based stats. Identities = 130/182 (71%), Positives = 156/182 (85%) Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62 + + ++ ++ + D + ++ E+ KGF+VT+ D ++ WARTGSLMWMTFGL Sbjct: 12 VAPSAKGLVDPRTGKPVGADDPFYLGLNDELADKGFVVTATDDIINWARTGSLMWMTFGL 71 Query: 63 ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122 ACCAVEM+QA+MPRYDLERFGFAPRASPRQSDV+I+AGTLTNKMA ALR+VYDQMPEPRY Sbjct: 72 ACCAVEMIQAAMPRYDLERFGFAPRASPRQSDVIIIAGTLTNKMAPALRKVYDQMPEPRY 131 Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182 VISMGSCANGGGYYHYSYSVVRGCDRI+PVDIYVPGCPP+AEAL+YG+LLLQKKIRR G Sbjct: 132 VISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPSAEALVYGVLLLQKKIRRSGT 191 Query: 183 VK 184 ++ Sbjct: 192 IE 193 >gi|89053661|ref|YP_509112.1| NADH dehydrogenase subunit B [Jannaschia sp. CCS1] gi|122499244|sp|Q28T75|NUOB_JANSC RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|88863210|gb|ABD54087.1| NADH dehydrogenase subunit B [Jannaschia sp. CCS1] Length = 177 Score = 255 bits (651), Expect = 2e-66, Method: Composition-based stats. Identities = 130/173 (75%), Positives = 145/173 (83%) Query: 11 ISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMM 70 ++ + + + ++ E+ KGFLVTS + ++ WARTGSL WMTFGLACCAVEMM Sbjct: 3 VATNPNHAGADREVGTQALNRELQDKGFLVTSSEDIINWARTGSLHWMTFGLACCAVEMM 62 Query: 71 QASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCA 130 SMPRYD ERFG APRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCA Sbjct: 63 HTSMPRYDAERFGIAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCA 122 Query: 131 NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQ+KIRR G + Sbjct: 123 NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQRKIRRTGTI 175 >gi|85708754|ref|ZP_01039820.1| NADH dehydrogenase-ubiquinone oxidoreductase, chain B [Erythrobacter sp. NAP1] gi|85690288|gb|EAQ30291.1| NADH dehydrogenase-ubiquinone oxidoreductase, chain B [Erythrobacter sp. NAP1] Length = 197 Score = 254 bits (650), Expect = 3e-66, Method: Composition-based stats. Identities = 127/189 (67%), Positives = 151/189 (79%), Gaps = 5/189 (2%) Query: 1 MGLTTVN-----QKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSL 55 +G+T N + + ++ + + F + +E+ KGFLVTS + L WARTGSL Sbjct: 8 VGITPPNNLPDVSALETAKAGEVRQPDEDYFRSLQTEVNDKGFLVTSTEDLFQWARTGSL 67 Query: 56 MWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYD 115 WMTFGLACCAVEM+ +MPRYD+ERFG APRASPRQSDVMIVAGTL NKMA ALR+VYD Sbjct: 68 WWMTFGLACCAVEMIHVNMPRYDMERFGIAPRASPRQSDVMIVAGTLCNKMAPALRKVYD 127 Query: 116 QMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175 QM +P+YVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG++ LQ+ Sbjct: 128 QMSDPKYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGVMQLQR 187 Query: 176 KIRRVGNVK 184 KIRR G ++ Sbjct: 188 KIRRSGTIE 196 >gi|99080583|ref|YP_612737.1| NADH dehydrogenase subunit B [Ruegeria sp. TM1040] gi|123077741|sp|Q1GIP1|NUOB_SILST RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|99036863|gb|ABF63475.1| NADH-quinone oxidoreductase B subunit [Ruegeria sp. TM1040] Length = 174 Score = 254 bits (650), Expect = 3e-66, Method: Composition-based stats. Identities = 129/173 (74%), Positives = 150/173 (86%), Gaps = 1/173 (0%) Query: 11 ISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMM 70 ++G ++ ++K + +++E+ KGFL+TS + ++ WARTGSL WMTFGLACCAVEMM Sbjct: 1 MAGANTAGVDK-EMVTQALNAELQDKGFLLTSAEDIINWARTGSLHWMTFGLACCAVEMM 59 Query: 71 QASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCA 130 SMPRYD ERFG APRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCA Sbjct: 60 HTSMPRYDAERFGIAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCA 119 Query: 131 NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG++ LQ+KIRR G + Sbjct: 120 NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGLMQLQRKIRRTGTL 172 >gi|85374165|ref|YP_458227.1| NADH dehydrogenase subunit B [Erythrobacter litoralis HTCC2594] gi|84787248|gb|ABC63430.1| NuoB, NADH dehydrogenase I, B subunit [Erythrobacter litoralis HTCC2594] Length = 217 Score = 254 bits (649), Expect = 4e-66, Method: Composition-based stats. Identities = 127/181 (70%), Positives = 148/181 (81%), Gaps = 3/181 (1%) Query: 7 NQKIISGQSSCSLEKVDAD---FSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLA 63 N+ + ++ E D F+ + +E+ KGFLVTS + L WARTGSL WMTFGLA Sbjct: 36 NRALHDAPTARGGEVRQPDGDYFNALQTEVNDKGFLVTSTEDLFQWARTGSLWWMTFGLA 95 Query: 64 CCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYV 123 CCAVEM+ +MPRYD+ERFG APRASPRQSDVMIVAGTL NKMA ALR+VYDQM +P+YV Sbjct: 96 CCAVEMIHVNMPRYDMERFGAAPRASPRQSDVMIVAGTLCNKMAPALRKVYDQMSDPKYV 155 Query: 124 ISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 ISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG++ LQ+KIRR G + Sbjct: 156 ISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGVMQLQRKIRRSGTI 215 Query: 184 K 184 + Sbjct: 216 E 216 >gi|110680471|ref|YP_683478.1| NADH dehydrogenase subunit B [Roseobacter denitrificans OCh 114] gi|123172224|sp|Q163Q1|NUOB_ROSDO RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|109456587|gb|ABG32792.1| NADH-quinone oxidoreductase chain B [Roseobacter denitrificans OCh 114] Length = 177 Score = 254 bits (649), Expect = 4e-66, Method: Composition-based stats. Identities = 125/158 (79%), Positives = 141/158 (89%) Query: 26 FSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA 85 ++ E+ KGFL+TS + ++ WARTGSL WMTFGLACCAVEMM +MPRYD+ERFG A Sbjct: 18 TQELNRELQDKGFLLTSTEDIINWARTGSLHWMTFGLACCAVEMMHTAMPRYDMERFGTA 77 Query: 86 PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRG 145 PRASPRQSD+MIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRG Sbjct: 78 PRASPRQSDLMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRG 137 Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 CDRIVPVD+YVPGCPPTAEAL+YGI+ LQ+KIRR G + Sbjct: 138 CDRIVPVDVYVPGCPPTAEALLYGIMQLQRKIRRTGTI 175 >gi|56606108|ref|NP_001008525.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial [Rattus norvegicus] gi|55824717|gb|AAH86574.1| NADH dehydrogenase (ubiquinone) Fe-S protein 7 [Rattus norvegicus] gi|149034571|gb|EDL89308.1| NADH dehydrogenase (ubiquinone) Fe-S protein 7, isoform CRA_d [Rattus norvegicus] Length = 218 Score = 254 bits (649), Expect = 5e-66, Method: Composition-based stats. Identities = 120/183 (65%), Positives = 141/183 (77%), Gaps = 5/183 (2%) Query: 2 GLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFG 61 G + Q +S + ++ + R +E ++VT +D L+ WAR SL MTFG Sbjct: 36 GSPSSTQSAVSKAGAGAVVPKPSHLPRSRAE-----YVVTKLDDLINWARRSSLWPMTFG 90 Query: 62 LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPR 121 LACCAVEMM + PRYD++RFG RASPRQ+DVMIVAGTLTNKMA ALR+VYDQMPEPR Sbjct: 91 LACCAVEMMHMAAPRYDMDRFGVVFRASPRQADVMIVAGTLTNKMAPALRKVYDQMPEPR 150 Query: 122 YVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181 YV+SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQ+KI+R Sbjct: 151 YVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQRKIKREQ 210 Query: 182 NVK 184 +K Sbjct: 211 KLK 213 >gi|316933892|ref|YP_004108874.1| NADH-quinone oxidoreductase subunit B [Rhodopseudomonas palustris DX-1] gi|315601606|gb|ADU44141.1| NADH-quinone oxidoreductase, B subunit [Rhodopseudomonas palustris DX-1] Length = 198 Score = 254 bits (648), Expect = 5e-66, Method: Composition-based stats. Identities = 136/182 (74%), Positives = 152/182 (83%) Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62 + II + + D F ++ E++ KGF V + D L+TWARTGSLMWMTFGL Sbjct: 16 IARPATGIIDPSTGKPVGANDPFFLNVNRELSDKGFFVAATDDLITWARTGSLMWMTFGL 75 Query: 63 ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122 ACCAVEMMQ SMPRYD ERFGFAPRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRY Sbjct: 76 ACCAVEMMQLSMPRYDAERFGFAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRY 135 Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182 VISMGSCANGGGYYHYSYSVVRGCDRIVP+DIYVPGCPPTAEAL+YG++LLQKKIRR G Sbjct: 136 VISMGSCANGGGYYHYSYSVVRGCDRIVPIDIYVPGCPPTAEALLYGVMLLQKKIRRTGT 195 Query: 183 VK 184 ++ Sbjct: 196 IE 197 >gi|39936016|ref|NP_948292.1| NADH dehydrogenase subunit B [Rhodopseudomonas palustris CGA009] gi|192291671|ref|YP_001992276.1| NADH dehydrogenase subunit B [Rhodopseudomonas palustris TIE-1] gi|81562349|sp|Q6N5M3|NUOB1_RHOPA RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName: Full=NADH dehydrogenase I subunit B 1; AltName: Full=NDH-1 subunit B 1 gi|238065014|sp|B3Q7N5|NUOB1_RHOPT RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName: Full=NADH dehydrogenase I subunit B 1; AltName: Full=NDH-1 subunit B 1 gi|39649870|emb|CAE28392.1| NADH-ubiquinone dehydrogenase chain B [Rhodopseudomonas palustris CGA009] gi|192285420|gb|ACF01801.1| NADH-quinone oxidoreductase, B subunit [Rhodopseudomonas palustris TIE-1] Length = 198 Score = 254 bits (648), Expect = 5e-66, Method: Composition-based stats. Identities = 136/182 (74%), Positives = 152/182 (83%) Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62 + II + + D F ++ E++ KGF V + D L+TWARTGSLMWMTFGL Sbjct: 16 IARPATGIIDPNTGRPVGADDPFFLNVNRELSDKGFFVAATDDLITWARTGSLMWMTFGL 75 Query: 63 ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122 ACCAVEMMQ SMPRYD ERFGFAPRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRY Sbjct: 76 ACCAVEMMQLSMPRYDAERFGFAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRY 135 Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182 VISMGSCANGGGYYHYSYSVVRGCDRIVP+DIYVPGCPPTAEAL+YG++LLQKKIRR G Sbjct: 136 VISMGSCANGGGYYHYSYSVVRGCDRIVPIDIYVPGCPPTAEALLYGVMLLQKKIRRTGT 195 Query: 183 VK 184 ++ Sbjct: 196 IE 197 >gi|157803902|ref|YP_001492451.1| NADH dehydrogenase subunit B [Rickettsia canadensis str. McKiel] gi|218528018|sp|A8EZ83|NUOB_RICCK RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|157785165|gb|ABV73666.1| NADH dehydrogenase beta subunit [Rickettsia canadensis str. McKiel] Length = 174 Score = 254 bits (648), Expect = 5e-66, Method: Composition-based stats. Identities = 112/156 (71%), Positives = 136/156 (87%) Query: 29 ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88 ++++++++GFL+T VD ++ WAR SL MTFGLACCAVEMMQA+ RYD++RFG R Sbjct: 12 LNNKLSNRGFLLTKVDDVIGWARANSLWPMTFGLACCAVEMMQAAASRYDMDRFGMLFRP 71 Query: 89 SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 148 SPRQSD+MIVAGTLTNKMA ALR+VYDQM EP++V+SMGSCANGGGYYH+SYSVVRGCDR Sbjct: 72 SPRQSDLMIVAGTLTNKMAPALRKVYDQMAEPKWVLSMGSCANGGGYYHFSYSVVRGCDR 131 Query: 149 IVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 IVPVDIY+PGCPPTAEALIYG++ LQKKI+R K Sbjct: 132 IVPVDIYIPGCPPTAEALIYGLMQLQKKIKRTTGFK 167 >gi|163732066|ref|ZP_02139512.1| NADH dehydrogenase subunit B [Roseobacter litoralis Och 149] gi|161394364|gb|EDQ18687.1| NADH dehydrogenase subunit B [Roseobacter litoralis Och 149] Length = 177 Score = 254 bits (648), Expect = 5e-66, Method: Composition-based stats. Identities = 126/173 (72%), Positives = 146/173 (84%) Query: 11 ISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMM 70 ++ + + + ++ E+ KGFL+TS + ++ WARTGSL WMTFGLACCAVEMM Sbjct: 3 VATNVNVAGADREVATQELNRELQDKGFLLTSTEDIINWARTGSLHWMTFGLACCAVEMM 62 Query: 71 QASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCA 130 +MPRYD+ERFG APRASPRQSD+MIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCA Sbjct: 63 HTAMPRYDMERFGTAPRASPRQSDLMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCA 122 Query: 131 NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGI+ LQ+KIRR G + Sbjct: 123 NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGIMQLQRKIRRTGTI 175 >gi|326934474|ref|XP_003213314.1| PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial-like, partial [Meleagris gallopavo] Length = 212 Score = 254 bits (648), Expect = 5e-66, Method: Composition-based stats. Identities = 121/174 (69%), Positives = 138/174 (79%), Gaps = 1/174 (0%) Query: 12 SGQSSCSLEKVDADFSRISSEITHKG-FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMM 70 + S K A + S T +G ++VT +D L+ WAR SL MTFGLACCAVEMM Sbjct: 34 ADSSVQVQPKSSAVLPKKSYVPTSRGEYIVTKLDDLINWARRSSLWPMTFGLACCAVEMM 93 Query: 71 QASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCA 130 + PRYD++RFG RASPRQ+DVMIVAGTLTNKMA ALR+VYDQMPEPRYV+SMGSCA Sbjct: 94 HMAAPRYDMDRFGVVFRASPRQADVMIVAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCA 153 Query: 131 NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQKKI+R ++ Sbjct: 154 NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKIKREKKIQ 207 >gi|315499789|ref|YP_004088592.1| NADH-quinone oxidoreductase, b subunit [Asticcacaulis excentricus CB 48] gi|315417801|gb|ADU14441.1| NADH-quinone oxidoreductase, B subunit [Asticcacaulis excentricus CB 48] Length = 186 Score = 254 bits (648), Expect = 5e-66, Method: Composition-based stats. Identities = 137/185 (74%), Positives = 154/185 (83%), Gaps = 1/185 (0%) Query: 1 MGLT-TVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMT 59 MG+ Q S + D F +SSE+ KGFLV S D ++TWARTGSLMWMT Sbjct: 1 MGVIIPAGQAGRSTVEGYDPKVHDKFFEAVSSELNEKGFLVASADDVITWARTGSLMWMT 60 Query: 60 FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119 FGLACCAVEMMQASMPRYD+ERFG APRASPRQSD+MIVAGTLTNKMA ALR+VYDQMP+ Sbjct: 61 FGLACCAVEMMQASMPRYDMERFGMAPRASPRQSDLMIVAGTLTNKMAPALRKVYDQMPD 120 Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179 PRYV+SMGSCANGGGYYHYSYSVVRGCDRIVPVD+YVPGCPP+AEAL+YG+L LQKKIRR Sbjct: 121 PRYVLSMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPSAEALLYGLLQLQKKIRR 180 Query: 180 VGNVK 184 G ++ Sbjct: 181 NGTIR 185 >gi|148255914|ref|YP_001240499.1| NADH dehydrogenase subunit B [Bradyrhizobium sp. BTAi1] gi|238055271|sp|A5EK99|NUOB_BRASB RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|146408087|gb|ABQ36593.1| NADH dehydrogenase subunit B [Bradyrhizobium sp. BTAi1] Length = 194 Score = 254 bits (648), Expect = 6e-66, Method: Composition-based stats. Identities = 136/182 (74%), Positives = 153/182 (84%) Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62 + + I+ + + D F + E++ KGF V + D L+TWARTGSLMWMTFGL Sbjct: 12 IAPAPKGILDPATGRPIGANDPYFLEVRHELSDKGFFVATADDLITWARTGSLMWMTFGL 71 Query: 63 ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122 ACCAVEMMQ SMPRYD+ERFGFAPRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRY Sbjct: 72 ACCAVEMMQVSMPRYDVERFGFAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRY 131 Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182 VISMGSCANGGGYYHYSYSVVRGCDRIVP+DIYVPGCPPTAEAL+YG+LLLQKKIRR G Sbjct: 132 VISMGSCANGGGYYHYSYSVVRGCDRIVPIDIYVPGCPPTAEALLYGVLLLQKKIRRTGT 191 Query: 183 VK 184 ++ Sbjct: 192 IE 193 >gi|115524527|ref|YP_781438.1| NADH dehydrogenase subunit B [Rhodopseudomonas palustris BisA53] gi|122296214|sp|Q07NM6|NUOB2_RHOP5 RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName: Full=NADH dehydrogenase I subunit B 2; AltName: Full=NDH-1 subunit B 2 gi|115518474|gb|ABJ06458.1| NADH-quinone oxidoreductase, B subunit [Rhodopseudomonas palustris BisA53] Length = 200 Score = 254 bits (648), Expect = 6e-66, Method: Composition-based stats. Identities = 134/182 (73%), Positives = 155/182 (85%) Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62 + I+ ++ + D F +++E++ KGF V + D L+TWARTGSLMWMTFGL Sbjct: 18 IAPAATGILDPRTGRPVGADDRFFVEVNNELSDKGFFVAATDDLITWARTGSLMWMTFGL 77 Query: 63 ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122 ACCAVEMMQ SMPRYD ERFGFAPRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRY Sbjct: 78 ACCAVEMMQMSMPRYDAERFGFAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRY 137 Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182 VISMGSCANGGGYYHYSY+VVRGCDRIVP+DIYVPGCPPTAEAL+YG++LLQKKIRR+G Sbjct: 138 VISMGSCANGGGYYHYSYAVVRGCDRIVPIDIYVPGCPPTAEALLYGVMLLQKKIRRIGT 197 Query: 183 VK 184 ++ Sbjct: 198 IE 199 >gi|114771817|ref|ZP_01449210.1| NADH dehydrogenase subunit B [alpha proteobacterium HTCC2255] gi|114547633|gb|EAU50524.1| NADH dehydrogenase subunit B [alpha proteobacterium HTCC2255] Length = 177 Score = 254 bits (648), Expect = 6e-66, Method: Composition-based stats. Identities = 129/173 (74%), Positives = 148/173 (85%) Query: 11 ISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMM 70 +S + + + S ++ E+ KGFL+TS + ++ WARTGSL WMTFGLACCAVEMM Sbjct: 3 VSTSLNTAGANKELATSALNRELQDKGFLLTSAEDIINWARTGSLHWMTFGLACCAVEMM 62 Query: 71 QASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCA 130 ++MPRYDLERFG APRASPRQSD+MIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCA Sbjct: 63 HSAMPRYDLERFGTAPRASPRQSDLMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCA 122 Query: 131 NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQ+K+RR G + Sbjct: 123 NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQRKMRRTGTI 175 >gi|302383046|ref|YP_003818869.1| NADH-quinone oxidoreductase subunit beta [Brevundimonas subvibrioides ATCC 15264] gi|302193674|gb|ADL01246.1| NADH-quinone oxidoreductase, B subunit [Brevundimonas subvibrioides ATCC 15264] Length = 193 Score = 253 bits (647), Expect = 7e-66, Method: Composition-based stats. Identities = 131/161 (81%), Positives = 145/161 (90%) Query: 23 DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82 D F +++EI +GFL S+D ++ WARTGSLMWMTFGLACCAVEM+QASMPRYDLERF Sbjct: 31 DKFFEAVNTEIAEQGFLTASLDDVINWARTGSLMWMTFGLACCAVEMIQASMPRYDLERF 90 Query: 83 GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142 G APRASPRQSD+MIVAGTLTNKMA ALR+VYDQMP+PRYV+SMGSCANGGGYYHYSYSV Sbjct: 91 GMAPRASPRQSDLMIVAGTLTNKMAPALRKVYDQMPDPRYVLSMGSCANGGGYYHYSYSV 150 Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 VRGCDRIVPVD YVPGCPPTAEALIYG+L LQKKIRR G + Sbjct: 151 VRGCDRIVPVDAYVPGCPPTAEALIYGLLQLQKKIRRTGTI 191 >gi|147902669|ref|NP_001087274.1| MGC85267 protein [Xenopus laevis] gi|51873813|gb|AAH78494.1| MGC85267 protein [Xenopus laevis] Length = 217 Score = 253 bits (647), Expect = 7e-66, Method: Composition-based stats. Identities = 121/166 (72%), Positives = 140/166 (84%), Gaps = 1/166 (0%) Query: 20 EKVDADFSRISSEITHKG-FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78 + A ++ SS ++KG F++T +D+LV WAR SL MTFGLACCAVEMM + PRYD Sbjct: 47 QNSSAVTAKKSSLPSNKGEFVITKLDELVNWARRSSLWPMTFGLACCAVEMMHMAAPRYD 106 Query: 79 LERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY 138 ++RFG RASPRQ+DVMIVAGTLTNKMA ALR+VYDQMPEPRYV+SMGSCANGGGYYHY Sbjct: 107 MDRFGVVFRASPRQADVMIVAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGYYHY 166 Query: 139 SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 SYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQKKI+R ++ Sbjct: 167 SYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKIKREKRLR 212 >gi|258542721|ref|YP_003188154.1| NADH dehydrogenase subunit B [Acetobacter pasteurianus IFO 3283-01] gi|256633799|dbj|BAH99774.1| NADH-quinone oxidoreductase chain B [Acetobacter pasteurianus IFO 3283-01] gi|256636858|dbj|BAI02827.1| NADH-quinone oxidoreductase chain B [Acetobacter pasteurianus IFO 3283-03] gi|256639911|dbj|BAI05873.1| NADH-quinone oxidoreductase chain B [Acetobacter pasteurianus IFO 3283-07] gi|256642967|dbj|BAI08922.1| NADH-quinone oxidoreductase chain B [Acetobacter pasteurianus IFO 3283-22] gi|256646022|dbj|BAI11970.1| NADH-quinone oxidoreductase chain B [Acetobacter pasteurianus IFO 3283-26] gi|256649075|dbj|BAI15016.1| NADH-quinone oxidoreductase chain B [Acetobacter pasteurianus IFO 3283-32] gi|256652062|dbj|BAI17996.1| NADH-quinone oxidoreductase chain B [Acetobacter pasteurianus IFO 3283-01-42C] gi|256655119|dbj|BAI21046.1| NADH-quinone oxidoreductase chain B [Acetobacter pasteurianus IFO 3283-12] Length = 186 Score = 253 bits (647), Expect = 7e-66, Method: Composition-based stats. Identities = 123/183 (67%), Positives = 144/183 (78%) Query: 1 MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTF 60 M + + + ++ + DA I+ + KGF+V ++D+LV W RTGSL M+F Sbjct: 1 MTTNQQDAVLWNREALPPGPEQDAVVRGITGVLAEKGFVVANLDKLVNWGRTGSLWPMSF 60 Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 GLACCAVEM+ A MPRYDL+R G PR SPRQSDVMIVAGTLTNKMA LRR+Y+QM EP Sbjct: 61 GLACCAVEMIHAYMPRYDLDRMGIIPRGSPRQSDVMIVAGTLTNKMAPVLRRLYEQMAEP 120 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 R+VISMGSCANGGGYYHYSYSVVRGCDRIVPVD+YVPGCPPTAEALIYGI+LLQKKIRR Sbjct: 121 RWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALIYGIMLLQKKIRRT 180 Query: 181 GNV 183 G + Sbjct: 181 GTI 183 >gi|255262340|ref|ZP_05341682.1| NADH-quinone oxidoreductase subunit b [Thalassiobium sp. R2A62] gi|255104675|gb|EET47349.1| NADH-quinone oxidoreductase subunit b [Thalassiobium sp. R2A62] Length = 177 Score = 253 bits (647), Expect = 8e-66, Method: Composition-based stats. Identities = 127/158 (80%), Positives = 141/158 (89%) Query: 26 FSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA 85 ++ E+ KGFL+TS + ++ WARTGSL WMTFGLACCAVEMM SMPRYDLERFG A Sbjct: 18 TQELNRELQDKGFLLTSTEDIINWARTGSLHWMTFGLACCAVEMMHTSMPRYDLERFGTA 77 Query: 86 PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRG 145 PRASPRQSD+MIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRG Sbjct: 78 PRASPRQSDLMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRG 137 Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 CDRIVPVD+YVPGCPPTAEAL+YGIL LQ+K+RR G + Sbjct: 138 CDRIVPVDVYVPGCPPTAEALLYGILQLQRKMRRTGTL 175 >gi|262277300|ref|ZP_06055093.1| NADH-quinone oxidoreductase subunit b (nadhdehydrogenase i subunit b) (ndh-1 subunit b) [alpha proteobacterium HIMB114] gi|262224403|gb|EEY74862.1| NADH-quinone oxidoreductase subunit b (nadhdehydrogenase i subunit b) (ndh-1 subunit b) [alpha proteobacterium HIMB114] Length = 173 Score = 253 bits (647), Expect = 8e-66, Method: Composition-based stats. Identities = 132/166 (79%), Positives = 148/166 (89%) Query: 19 LEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78 L+++ +F ++ E + KGF+ + D L+ WARTGSL WMTFGLACCAVEMMQASMPRYD Sbjct: 7 LDQIPQEFREVAEEFSEKGFVTIASDTLINWARTGSLHWMTFGLACCAVEMMQASMPRYD 66 Query: 79 LERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY 138 LERFG APRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHY Sbjct: 67 LERFGAAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHY 126 Query: 139 SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 SYSVVRGCDRIVPVDIYVPGCPP+AEAL+Y IL LQKKIRR G+++ Sbjct: 127 SYSVVRGCDRIVPVDIYVPGCPPSAEALLYAILQLQKKIRREGSLQ 172 >gi|163793188|ref|ZP_02187164.1| excinuclease ABC subunit A [alpha proteobacterium BAL199] gi|159181834|gb|EDP66346.1| excinuclease ABC subunit A [alpha proteobacterium BAL199] Length = 179 Score = 253 bits (647), Expect = 8e-66, Method: Composition-based stats. Identities = 123/183 (67%), Positives = 141/183 (77%), Gaps = 6/183 (3%) Query: 1 MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTF 60 MG+ + + +G + DA S +S EI KGF++ D+L WAR GSL MTF Sbjct: 1 MGVINAERPVPAGANQ------DAILSAVSDEIREKGFVIAQADKLFNWARCGSLWPMTF 54 Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 GLACCAVEMM + RYDL+RFG R SPRQSDVMIVAGTLTNKMA ALR+VYDQM EP Sbjct: 55 GLACCAVEMMHTAASRYDLDRFGLVFRPSPRQSDVMIVAGTLTNKMAPALRKVYDQMAEP 114 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 R+VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG+L LQ+KI+R Sbjct: 115 RWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGVLQLQRKIKRT 174 Query: 181 GNV 183 + Sbjct: 175 ATI 177 >gi|21312950|ref|NP_083548.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial precursor [Mus musculus] gi|47117311|sp|Q9DC70|NDUS7_MOUSE RecName: Full=NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial; AltName: Full=Complex I-20kD; Short=CI-20kD; AltName: Full=NADH-ubiquinone oxidoreductase 20 kDa subunit; Flags: Precursor gi|12833606|dbj|BAB22592.1| unnamed protein product [Mus musculus] gi|15488721|gb|AAH13503.1| NADH dehydrogenase (ubiquinone) Fe-S protein 7 [Mus musculus] gi|148699633|gb|EDL31580.1| NADH dehydrogenase (ubiquinone) Fe-S protein 7, isoform CRA_b [Mus musculus] Length = 224 Score = 253 bits (647), Expect = 8e-66, Method: Composition-based stats. Identities = 115/151 (76%), Positives = 130/151 (86%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93 + ++VT +D L+ WAR SL MTFGLACCAVEMM + PRYD++RFG RASPRQ+ Sbjct: 69 SRAEYVVTKLDDLINWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQA 128 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD 153 DVMIVAGTLTNKMA ALR+VYDQMPEPRYV+SMGSCANGGGYYHYSYSVVRGCDRIVPVD Sbjct: 129 DVMIVAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPVD 188 Query: 154 IYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 IYVPGCPPTAEAL+YGIL LQ+KI+R +K Sbjct: 189 IYVPGCPPTAEALLYGILQLQRKIKREQKLK 219 >gi|197128812|gb|ACH45310.1| putative NADH dehydrogenase Fe-S protein 7 >Feature gb|DQ213771 [Taeniopygia guttata] Length = 216 Score = 253 bits (647), Expect = 8e-66, Method: Composition-based stats. Identities = 120/174 (68%), Positives = 140/174 (80%), Gaps = 1/174 (0%) Query: 12 SGQSSCSLEKVDADFSRISSEITHKG-FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMM 70 + SS ++K A R S + +G +++ +D LV WAR SL MTFGLACCAVEMM Sbjct: 38 AADSSVQVQKSSAVVPRKSYVPSSRGEYVIAKLDDLVNWARRSSLWPMTFGLACCAVEMM 97 Query: 71 QASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCA 130 + PRYD++RFG RASPRQ+DVMIVAGTLTNKMA ALR+VYDQMPEPRYV+SMGSCA Sbjct: 98 HMAAPRYDMDRFGVVFRASPRQADVMIVAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCA 157 Query: 131 NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQ+KI+R ++ Sbjct: 158 NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQRKIKREKRMQ 211 >gi|87200316|ref|YP_497573.1| NADH dehydrogenase subunit B [Novosphingobium aromaticivorans DSM 12444] gi|123488910|sp|Q2G5Y4|NUOB_NOVAD RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|87135997|gb|ABD26739.1| NADH dehydrogenase subunit B [Novosphingobium aromaticivorans DSM 12444] Length = 181 Score = 253 bits (646), Expect = 8e-66, Method: Composition-based stats. Identities = 125/177 (70%), Positives = 146/177 (82%) Query: 8 QKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAV 67 +++ A F +++E+ KGFLVTS ++L WARTGSL WMTFGLACCAV Sbjct: 4 SPLVTADQGAVAAPDQAFFDSLNAEVNDKGFLVTSTEELFQWARTGSLWWMTFGLACCAV 63 Query: 68 EMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMG 127 EM+ +MPRYD+ERFG APRASPRQSDVMIVAGTL NKMA ALR+VYDQM +P+YVISMG Sbjct: 64 EMIHVNMPRYDMERFGVAPRASPRQSDVMIVAGTLCNKMAPALRKVYDQMSDPKYVISMG 123 Query: 128 SCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 SCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG++ LQ+KIRR G ++ Sbjct: 124 SCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGVMQLQRKIRRAGTLE 180 >gi|118404166|ref|NP_001072396.1| NADH dehydrogenase (ubiquinone) Fe-S protein 7, 20kDa (NADH-coenzyme Q reductase) [Xenopus (Silurana) tropicalis] gi|113197754|gb|AAI21597.1| hypothetical protein MGC147194 [Xenopus (Silurana) tropicalis] Length = 217 Score = 253 bits (646), Expect = 9e-66, Method: Composition-based stats. Identities = 121/166 (72%), Positives = 140/166 (84%), Gaps = 1/166 (0%) Query: 20 EKVDADFSRISSEITHKG-FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78 +K A ++ S ++KG F++T +D+LV WAR SL MTFGLACCAVEMM + PRYD Sbjct: 47 QKSSAVTAKKSLLPSNKGEFVITKLDELVNWARRSSLWPMTFGLACCAVEMMHMAAPRYD 106 Query: 79 LERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY 138 ++RFG RASPRQ+DVMIVAGTLTNKMA ALR+VYDQMPEPRYV+SMGSCANGGGYYHY Sbjct: 107 MDRFGVVFRASPRQADVMIVAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGYYHY 166 Query: 139 SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 SYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQKKI+R ++ Sbjct: 167 SYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKIKREKRLR 212 >gi|90423901|ref|YP_532271.1| NADH dehydrogenase subunit B [Rhodopseudomonas palustris BisB18] gi|122476336|sp|Q215I4|NUOB1_RHOPB RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName: Full=NADH dehydrogenase I subunit B 1; AltName: Full=NDH-1 subunit B 1 gi|90105915|gb|ABD87952.1| NADH-quinone oxidoreductase, B subunit [Rhodopseudomonas palustris BisB18] Length = 201 Score = 253 bits (646), Expect = 1e-65, Method: Composition-based stats. Identities = 134/182 (73%), Positives = 153/182 (84%) Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62 + I+ ++ + D F +++E+ KGF V + D L+TWARTGSLMWMTFGL Sbjct: 19 VAPAATGILDPRTGRPVGADDRFFLEVNNELADKGFFVAATDDLITWARTGSLMWMTFGL 78 Query: 63 ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122 ACCAVEMMQ SMPRYD ERFGFAPRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRY Sbjct: 79 ACCAVEMMQMSMPRYDAERFGFAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRY 138 Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182 VISMGSCANGGGYYHYSY+VVRGCDRIVP+DIYVPGCPPTAEAL+YG++LLQKKIRR G Sbjct: 139 VISMGSCANGGGYYHYSYAVVRGCDRIVPIDIYVPGCPPTAEALLYGVMLLQKKIRRTGT 198 Query: 183 VK 184 ++ Sbjct: 199 IE 200 >gi|148259933|ref|YP_001234060.1| NADH dehydrogenase subunit B [Acidiphilium cryptum JF-5] gi|326403113|ref|YP_004283194.1| NADH-quinone oxidoreductase subunit B [Acidiphilium multivorum AIU301] gi|218527971|sp|A5FX09|NUOB1_ACICJ RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName: Full=NADH dehydrogenase I subunit B 1; AltName: Full=NDH-1 subunit B 1 gi|146401614|gb|ABQ30141.1| NADH dehydrogenase subunit B [Acidiphilium cryptum JF-5] gi|325049974|dbj|BAJ80312.1| NADH-quinone oxidoreductase subunit B [Acidiphilium multivorum AIU301] Length = 186 Score = 253 bits (646), Expect = 1e-65, Method: Composition-based stats. Identities = 127/166 (76%), Positives = 141/166 (84%) Query: 18 SLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRY 77 + +A I+ EI KGF+V ++D+LV WARTGSL MTFGLACCAVEM+ A MPR+ Sbjct: 18 PGAEQEAVIRGITGEIAGKGFVVANLDRLVNWARTGSLWPMTFGLACCAVEMIHAYMPRW 77 Query: 78 DLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137 DL+RFG PR SPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYH Sbjct: 78 DLDRFGIIPRNSPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYH 137 Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 YSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGI LQKKIRR G + Sbjct: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALVYGITQLQKKIRRTGTI 183 >gi|254294103|ref|YP_003060126.1| NADH-quinone oxidoreductase subunit beta [Hirschia baltica ATCC 49814] gi|254042634|gb|ACT59429.1| NADH-quinone oxidoreductase, B subunit [Hirschia baltica ATCC 49814] Length = 188 Score = 253 bits (646), Expect = 1e-65, Method: Composition-based stats. Identities = 128/183 (69%), Positives = 150/183 (81%) Query: 1 MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTF 60 M TVN + +S + D F+ +S E+ KGF+V +D ++WARTGSLM+M+F Sbjct: 4 MSTPTVNSAQSASDASAKIRGDDPFFAGVSDELADKGFVVAKLDDAISWARTGSLMFMSF 63 Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 GLACCAVEMM A+ PRYD+ERFG APR +PRQSD+MIVAGTLTNKMA A+R+VYDQM EP Sbjct: 64 GLACCAVEMMHAANPRYDMERFGMAPRGTPRQSDLMIVAGTLTNKMAPAMRKVYDQMAEP 123 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD+YVPGCPPTAEAL+YG+L LQKKIRR Sbjct: 124 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALMYGLLQLQKKIRRE 183 Query: 181 GNV 183 G + Sbjct: 184 GTI 186 >gi|329114679|ref|ZP_08243438.1| NADH-quinone oxidoreductase subunit B 2 [Acetobacter pomorum DM001] gi|326696159|gb|EGE47841.1| NADH-quinone oxidoreductase subunit B 2 [Acetobacter pomorum DM001] Length = 186 Score = 253 bits (646), Expect = 1e-65, Method: Composition-based stats. Identities = 123/183 (67%), Positives = 144/183 (78%) Query: 1 MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTF 60 M + + + ++ + DA I+ + KGF+V ++D+LV W RTGSL M+F Sbjct: 1 MTANQQDAVLWNREALPPGPEQDAVVRGITGVLAEKGFVVANLDKLVNWGRTGSLWPMSF 60 Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 GLACCAVEM+ A MPRYDL+R G PR SPRQSDVMIVAGTLTNKMA LRR+Y+QM EP Sbjct: 61 GLACCAVEMIHAYMPRYDLDRMGIIPRGSPRQSDVMIVAGTLTNKMAPVLRRLYEQMAEP 120 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 R+VISMGSCANGGGYYHYSYSVVRGCDRIVPVD+YVPGCPPTAEALIYGI+LLQKKIRR Sbjct: 121 RWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALIYGIMLLQKKIRRT 180 Query: 181 GNV 183 G + Sbjct: 181 GTI 183 >gi|318054193|ref|NP_001187743.1| mitochondrial NADH dehydrogenase (ubiquinone) iron-sulfur protein 7 [Ictalurus punctatus] gi|308323857|gb|ADO29064.1| mitochondrial NADH dehydrogenase (ubiquinone) iron-sulfur protein 7 [Ictalurus punctatus] Length = 217 Score = 253 bits (646), Expect = 1e-65, Method: Composition-based stats. Identities = 120/166 (72%), Positives = 138/166 (83%), Gaps = 1/166 (0%) Query: 20 EKVDADFSRISSEITHKG-FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78 EK A + +S ++ KG +++T +D LV WAR SL MTFGLACCAVEMM + PRYD Sbjct: 47 EKSTAVALKPTSAVSSKGEYVITKLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPRYD 106 Query: 79 LERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY 138 ++RFG RASPRQ+DVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHY Sbjct: 107 MDRFGVVFRASPRQADVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHY 166 Query: 139 SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 SYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG L LQ+KI+R ++ Sbjct: 167 SYSVVRGCDRIVPVDIYVPGCPPTAEALLYGTLQLQRKIKREKKMR 212 >gi|148236498|ref|NP_001088930.1| NADH dehydrogenase (ubiquinone) Fe-S protein 7, 20kDa (NADH-coenzyme Q reductase) [Xenopus laevis] gi|57032922|gb|AAH88820.1| LOC496303 protein [Xenopus laevis] Length = 180 Score = 252 bits (645), Expect = 1e-65, Method: Composition-based stats. Identities = 121/175 (69%), Positives = 141/175 (80%), Gaps = 1/175 (0%) Query: 11 ISGQSSCSLEKVDADFSRISSEITHKG-FLVTSVDQLVTWARTGSLMWMTFGLACCAVEM 69 + S S + + +S ++KG F++T +D+LV WAR SL MTFGLACCAVEM Sbjct: 1 MPPASYQSDRRAVQSLQKKTSLPSNKGEFVITKLDELVNWARRSSLWPMTFGLACCAVEM 60 Query: 70 MQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSC 129 M + PRYD++RFG RASPRQ+DVMIVAGTLTNKMA ALR+VYDQMPEPRYV+SMGSC Sbjct: 61 MHMAAPRYDMDRFGVVFRASPRQADVMIVAGTLTNKMAPALRKVYDQMPEPRYVVSMGSC 120 Query: 130 ANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 ANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQKKI+R ++ Sbjct: 121 ANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKIKREKRLR 175 >gi|126323645|ref|XP_001373250.1| PREDICTED: hypothetical protein [Monodelphis domestica] Length = 304 Score = 252 bits (645), Expect = 1e-65, Method: Composition-based stats. Identities = 115/147 (78%), Positives = 129/147 (87%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 +++T +D L+ WAR SL MTFGLACCAVEMM + PRYD++RFG RASPRQSDVMI Sbjct: 153 YVITKLDDLINWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQSDVMI 212 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGTLTNKMA ALR+VYDQMPEPRYV+SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP Sbjct: 213 VAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 272 Query: 158 GCPPTAEALIYGILLLQKKIRRVGNVK 184 GCPPTAEAL+YGIL LQKKI+R ++ Sbjct: 273 GCPPTAEALLYGILQLQKKIKREKRLR 299 >gi|117926908|ref|YP_867525.1| NADH-quinone oxidoreductase subunit beta [Magnetococcus sp. MC-1] gi|238065166|sp|A0LDS6|NUOB_MAGSM RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|117610664|gb|ABK46119.1| NADH dehydrogenase subunit B [Magnetococcus sp. MC-1] Length = 167 Score = 252 bits (645), Expect = 1e-65, Method: Composition-based stats. Identities = 116/158 (73%), Positives = 133/158 (84%) Query: 26 FSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA 85 + E++ +GFL+TS D+LV W R+ S+ MTFGLACCAVEMM A RYDL+RFG Sbjct: 2 IEELHQEVSDRGFLLTSADKLVNWGRSMSMWPMTFGLACCAVEMMNAGASRYDLDRFGVV 61 Query: 86 PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRG 145 R SPRQSDV+IVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRG Sbjct: 62 FRGSPRQSDVIIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRG 121 Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 CDRI+PVD+Y+PGCPPTAEA++YGI+ LQKKI R G V Sbjct: 122 CDRILPVDVYIPGCPPTAEAVMYGIMQLQKKINREGQV 159 >gi|294083712|ref|YP_003550469.1| NADH:ubiquinone oxidoreductase 20 kD subunit and related Fe-S oxidoreductase [Candidatus Puniceispirillum marinum IMCC1322] gi|292663284|gb|ADE38385.1| NADH:ubiquinone oxidoreductase 20 kD subunit and related Fe-S oxidoreductase [Candidatus Puniceispirillum marinum IMCC1322] Length = 182 Score = 252 bits (645), Expect = 1e-65, Method: Composition-based stats. Identities = 119/178 (66%), Positives = 141/178 (79%), Gaps = 3/178 (1%) Query: 9 KIISGQSSCSLEK---VDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACC 65 +I ++ + DA + EIT++GF++ D+L WAR+GSL MTFGLACC Sbjct: 2 GVIDPYNAPPIPPGADQDAILKAVGDEITNRGFVIAKADKLFNWARSGSLWPMTFGLACC 61 Query: 66 AVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVIS 125 AVEMM ++ RYD++R+G R SPRQSDVMIVAGTLTNKMA ALRRVYDQMPEPR+V+S Sbjct: 62 AVEMMHSAASRYDMDRYGMLFRPSPRQSDVMIVAGTLTNKMAPALRRVYDQMPEPRWVLS 121 Query: 126 MGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 MGSCANGGGYYHYSY+VVRGCDRIVPVD+YVPGCPPTAEALIYG+L LQKKIRR + Sbjct: 122 MGSCANGGGYYHYSYAVVRGCDRIVPVDVYVPGCPPTAEALIYGLLQLQKKIRRTATI 179 >gi|254436528|ref|ZP_05050022.1| NADH-quinone oxidoreductase, B subunit subfamily [Octadecabacter antarcticus 307] gi|198251974|gb|EDY76288.1| NADH-quinone oxidoreductase, B subunit subfamily [Octadecabacter antarcticus 307] Length = 177 Score = 252 bits (645), Expect = 1e-65, Method: Composition-based stats. Identities = 132/161 (81%), Positives = 141/161 (87%) Query: 23 DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82 D ++ E+T KGFLVTS L+ WARTGSL WMTFGLACCAVEMM SMPRYD ERF Sbjct: 15 DVATQDLNHELTDKGFLVTSSADLINWARTGSLHWMTFGLACCAVEMMHTSMPRYDAERF 74 Query: 83 GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142 G APRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSV Sbjct: 75 GIAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSV 134 Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 VRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQ+K+RR G + Sbjct: 135 VRGCDRIVPVDIYVPGCPPTAEALLYGILQLQRKMRRTGTI 175 >gi|126729549|ref|ZP_01745362.1| NADH dehydrogenase subunit B [Sagittula stellata E-37] gi|126709668|gb|EBA08721.1| NADH dehydrogenase subunit B [Sagittula stellata E-37] Length = 174 Score = 252 bits (645), Expect = 1e-65, Method: Composition-based stats. Identities = 129/173 (74%), Positives = 150/173 (86%), Gaps = 1/173 (0%) Query: 11 ISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMM 70 ++G ++ +++ A ++ E+ KGFL+TS + ++ WARTGSL WMTFGLACCAVEMM Sbjct: 1 MTGANTAGVDREVATQD-LNRELQDKGFLLTSTEDIINWARTGSLHWMTFGLACCAVEMM 59 Query: 71 QASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCA 130 SMPRYDLERFG APRASPRQSD+MIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCA Sbjct: 60 HTSMPRYDLERFGTAPRASPRQSDLMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCA 119 Query: 131 NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 NGGGYYHYSYSVVRGCDR+VPVD+YVPGCPPTAEAL+YGI+ LQKKIRR G + Sbjct: 120 NGGGYYHYSYSVVRGCDRVVPVDVYVPGCPPTAEALLYGIMALQKKIRRTGTL 172 >gi|149184638|ref|ZP_01862956.1| NADH dehydrogenase subunit B [Erythrobacter sp. SD-21] gi|148831958|gb|EDL50391.1| NADH dehydrogenase subunit B [Erythrobacter sp. SD-21] Length = 168 Score = 252 bits (644), Expect = 1e-65, Method: Composition-based stats. Identities = 130/167 (77%), Positives = 147/167 (88%), Gaps = 1/167 (0%) Query: 19 LEKVDAD-FSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRY 77 + K DAD F+ + +E+ KGFLVTS + L WARTGSL WMTFGLACCAVEM+ +MPRY Sbjct: 1 MRKPDADYFNALQTEVNDKGFLVTSTEDLFQWARTGSLWWMTFGLACCAVEMIHVNMPRY 60 Query: 78 DLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137 D+ERFG APRASPRQSDVMIVAGTL NKMA ALR+VYDQM EP+YVISMGSCANGGGYYH Sbjct: 61 DMERFGVAPRASPRQSDVMIVAGTLCNKMAPALRKVYDQMSEPKYVISMGSCANGGGYYH 120 Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 YSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG++ LQ+KIRRVG ++ Sbjct: 121 YSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGVMQLQRKIRRVGTIE 167 >gi|254450431|ref|ZP_05063868.1| NADH dehydrogenase i, b subunit [Octadecabacter antarcticus 238] gi|198264837|gb|EDY89107.1| NADH dehydrogenase i, b subunit [Octadecabacter antarcticus 238] Length = 184 Score = 252 bits (644), Expect = 1e-65, Method: Composition-based stats. Identities = 132/161 (81%), Positives = 141/161 (87%) Query: 23 DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82 D ++ E+T KGFLVTS L+ WARTGSL WMTFGLACCAVEMM SMPRYD ERF Sbjct: 22 DVATQDLNKELTDKGFLVTSSADLINWARTGSLHWMTFGLACCAVEMMHTSMPRYDAERF 81 Query: 83 GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142 G APRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSV Sbjct: 82 GIAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSV 141 Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 VRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQ+K+RR G + Sbjct: 142 VRGCDRIVPVDIYVPGCPPTAEALLYGILQLQRKMRRTGTI 182 >gi|296283830|ref|ZP_06861828.1| NADH dehydrogenase subunit B [Citromicrobium bathyomarinum JL354] Length = 192 Score = 252 bits (644), Expect = 2e-65, Method: Composition-based stats. Identities = 128/179 (71%), Positives = 149/179 (83%), Gaps = 1/179 (0%) Query: 7 NQKIISGQSSCSLEKVDAD-FSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACC 65 N ++ + + D+D F+ + +E+ KGFLVTS ++L WARTGSL WMTFGLACC Sbjct: 13 NPQMQPAAQPGEVRQPDSDYFNALQTEVNDKGFLVTSTEELFQWARTGSLWWMTFGLACC 72 Query: 66 AVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVIS 125 AVEM+ +MPRYD+ERFG APRASPRQSDVMIVAGTL NKMA ALR+VYDQM P+YVIS Sbjct: 73 AVEMIHVNMPRYDMERFGVAPRASPRQSDVMIVAGTLCNKMAPALRKVYDQMSNPKYVIS 132 Query: 126 MGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 MGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG++ LQ+KIRR G V+ Sbjct: 133 MGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGVMQLQRKIRRSGTVE 191 >gi|186920122|ref|YP_001874776.1| NADH dehydrogenase subunit 10 [Hemiselmis andersenii] gi|186461068|gb|ACC78230.1| NADH dehydrogenase subunit 10 [Hemiselmis andersenii] Length = 182 Score = 252 bits (644), Expect = 2e-65, Method: Composition-based stats. Identities = 113/153 (73%), Positives = 130/153 (84%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP 90 + + F+++ +D L+ WAR GSL MTFGLACCAVEMM A RYD +RFG RASP Sbjct: 24 TTMLKTEFVISKLDDLLNWARRGSLWPMTFGLACCAVEMMHAGASRYDFDRFGIIFRASP 83 Query: 91 RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150 RQSDVMIVAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSY+VVRGCDR+V Sbjct: 84 RQSDVMIVAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYAVVRGCDRVV 143 Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 PVDIYVPGCPPTAEAL+YGI+ LQKKI++ N+ Sbjct: 144 PVDIYVPGCPPTAEALLYGIVQLQKKIKQNKNL 176 >gi|197097452|ref|NP_001126953.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial precursor [Pongo abelii] gi|269969393|sp|P0CB83|NDUS7_PONAB RecName: Full=NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial; AltName: Full=Complex I-20kD; Short=CI-20kD; AltName: Full=NADH-ubiquinone oxidoreductase 20 kDa subunit; Flags: Precursor gi|55733271|emb|CAH93318.1| hypothetical protein [Pongo abelii] Length = 213 Score = 252 bits (644), Expect = 2e-65, Method: Composition-based stats. Identities = 116/179 (64%), Positives = 138/179 (77%) Query: 6 VNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACC 65 V+Q + + S + + + + ++V +D L+ WAR SL MTFGLACC Sbjct: 30 VHQSVATDGPSSTQPALPKARAVAPKPSSRGEYVVAKLDDLINWARRSSLWPMTFGLACC 89 Query: 66 AVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVIS 125 AVEMM + PRYD++RFG RASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYV+S Sbjct: 90 AVEMMHMAAPRYDMDRFGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVVS 149 Query: 126 MGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 MGSCANGGGYYHYSYSVVRGCDRIVPVDIY+PGCPPTAEAL+YGIL LQ+KI+R ++ Sbjct: 150 MGSCANGGGYYHYSYSVVRGCDRIVPVDIYIPGCPPTAEALLYGILQLQRKIKRERRLQ 208 >gi|83311885|ref|YP_422149.1| NADH dehydrogenase subunit B [Magnetospirillum magneticum AMB-1] gi|123541537|sp|Q2W3I5|NUOB_MAGMM RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|82946726|dbj|BAE51590.1| NADH:ubiquinone oxidoreductase 20 kD subunit and related Fe-S oxidoreductase [Magnetospirillum magneticum AMB-1] Length = 186 Score = 252 bits (643), Expect = 2e-65, Method: Composition-based stats. Identities = 124/167 (74%), Positives = 139/167 (83%) Query: 17 CSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPR 76 DA +++EI+ KGF++ SVD +V WARTGSL MTFGLACCAVEMM A R Sbjct: 18 PPGPAQDALLKAVTTEISDKGFVLASVDAVVNWARTGSLWPMTFGLACCAVEMMHAGCSR 77 Query: 77 YDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY 136 YD++RFG R SPRQSD+MIVAGTLTNKMA ALRRVYDQM EPR+VISMGSCANGGGYY Sbjct: 78 YDMDRFGVVFRPSPRQSDLMIVAGTLTNKMAPALRRVYDQMAEPRWVISMGSCANGGGYY 137 Query: 137 HYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 HYSYSVVRGCDRIVPVDIYVPGCPP+AEAL+YGIL LQKKIRR G++ Sbjct: 138 HYSYSVVRGCDRIVPVDIYVPGCPPSAEALMYGILQLQKKIRRTGSI 184 >gi|329850728|ref|ZP_08265573.1| NADH-quinone oxidoreductase subunit B [Asticcacaulis biprosthecum C19] gi|328841043|gb|EGF90614.1| NADH-quinone oxidoreductase subunit B [Asticcacaulis biprosthecum C19] Length = 184 Score = 252 bits (643), Expect = 2e-65, Method: Composition-based stats. Identities = 133/162 (82%), Positives = 149/162 (91%) Query: 23 DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82 D F +S+E+ KGFLV S D ++TWARTGSLMWMTFGLACCAVEMMQASMPRYD+ERF Sbjct: 22 DKFFESVSAELDAKGFLVASADDVITWARTGSLMWMTFGLACCAVEMMQASMPRYDMERF 81 Query: 83 GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142 G APRASPRQSD+MIVAGTLTNKMA ALR+VYDQMP+PRYV+SMGSCANGGGYYHYSYSV Sbjct: 82 GMAPRASPRQSDLMIVAGTLTNKMAPALRKVYDQMPDPRYVLSMGSCANGGGYYHYSYSV 141 Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 VRGCDRIVPVD+YVPGCPP+AEAL+YG+L LQKKIRR GN++ Sbjct: 142 VRGCDRIVPVDVYVPGCPPSAEALLYGLLQLQKKIRRTGNIR 183 >gi|308321280|gb|ADO27792.1| mitochondrial NADH dehydrogenase iron-sulfur protein 7 [Ictalurus furcatus] Length = 217 Score = 252 bits (643), Expect = 2e-65, Method: Composition-based stats. Identities = 119/166 (71%), Positives = 137/166 (82%), Gaps = 1/166 (0%) Query: 20 EKVDADFSRISSEITHKG-FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78 EK + +S ++ KG +++T +D LV WAR SL MTFGLACCAVEMM + PRYD Sbjct: 47 EKSTVVALKPTSAVSSKGEYVITKLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPRYD 106 Query: 79 LERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY 138 ++RFG RASPRQ+DVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHY Sbjct: 107 MDRFGVVFRASPRQADVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHY 166 Query: 139 SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 SYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG L LQ+KI+R ++ Sbjct: 167 SYSVVRGCDRIVPVDIYVPGCPPTAEALLYGTLQLQRKIKREKKMR 212 >gi|66512193|ref|XP_392437.2| PREDICTED: probable NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial [Apis mellifera] Length = 223 Score = 252 bits (643), Expect = 2e-65, Method: Composition-based stats. Identities = 110/173 (63%), Positives = 136/173 (78%) Query: 12 SGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQ 71 + +SS + +S + + V +D ++ W R GS+ +TFGLACCAVEMM Sbjct: 46 TSESSLPEKAKKIPYSPFQNTNNLAEYAVARLDDILNWGRKGSIWPLTFGLACCAVEMMH 105 Query: 72 ASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCAN 131 + PRYD++R+G RASPRQ+DV+IVAGTLTNKMA ALR++YDQMPEPR+VISMGSCAN Sbjct: 106 IAAPRYDMDRYGVVFRASPRQADVIIVAGTLTNKMAPALRKIYDQMPEPRWVISMGSCAN 165 Query: 132 GGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 GGGYYHYSYSVVRGCDRI+PVDIYVPGCPPTAEAL+YGIL LQKKI+R+ ++ Sbjct: 166 GGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALMYGILQLQKKIKRMKTLQ 218 >gi|11466592|ref|NP_066482.1| NADH dehydrogenase subunit 10 [Rhodomonas salina] gi|10444179|gb|AAG17753.1|AF288090_29 NADH dehydrogenase subunit 10 [Rhodomonas salina] Length = 158 Score = 252 bits (643), Expect = 2e-65, Method: Composition-based stats. Identities = 112/152 (73%), Positives = 129/152 (84%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 + F+++ +D L+ WAR GSL MTFGLACCAVEMM A RYD +RFG RASPRQ Sbjct: 2 LNKTKFVISKIDDLLNWARRGSLWPMTFGLACCAVEMMHAGASRYDFDRFGIIFRASPRQ 61 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 SD+MIVAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYH+SYSVVRGCD+IVPV Sbjct: 62 SDIMIVAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHFSYSVVRGCDKIVPV 121 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 D++VPGCPPTAEAL+YGIL LQKKI+R V+ Sbjct: 122 DVFVPGCPPTAEALLYGILQLQKKIKRTKTVQ 153 >gi|146341114|ref|YP_001206162.1| NADH dehydrogenase subunit B [Bradyrhizobium sp. ORS278] gi|238055272|sp|A4YVL1|NUOB_BRASO RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|146193920|emb|CAL77937.1| NADH-quinone oxidoreductase chain B (NADH dehydrogenase I, chain B) (NDH-1, chain B) [Bradyrhizobium sp. ORS278] Length = 193 Score = 252 bits (643), Expect = 2e-65, Method: Composition-based stats. Identities = 136/182 (74%), Positives = 153/182 (84%) Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62 + + I+ + + D F + E++ KGF V + D L+TWARTGSLMWMTFGL Sbjct: 11 IAPAPKGILDPATGRPVGAHDPYFLEVKHELSDKGFFVATADDLITWARTGSLMWMTFGL 70 Query: 63 ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122 ACCAVEMMQ SMPRYD+ERFGFAPRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRY Sbjct: 71 ACCAVEMMQVSMPRYDVERFGFAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRY 130 Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182 VISMGSCANGGGYYHYSYSVVRGCDRIVP+DIYVPGCPPTAEAL+YG+LLLQKKIRR G Sbjct: 131 VISMGSCANGGGYYHYSYSVVRGCDRIVPIDIYVPGCPPTAEALLYGVLLLQKKIRRTGT 190 Query: 183 VK 184 ++ Sbjct: 191 IE 192 >gi|138519723|gb|AAI35870.1| hypothetical protein MGC147194 [Xenopus (Silurana) tropicalis] Length = 217 Score = 252 bits (643), Expect = 2e-65, Method: Composition-based stats. Identities = 120/166 (72%), Positives = 140/166 (84%), Gaps = 1/166 (0%) Query: 20 EKVDADFSRISSEITHKG-FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78 +K A ++ S ++KG F++T +D+LV WAR SL MTFGLACCAVEMM + PRYD Sbjct: 47 QKSSAVTAKKSLLPSNKGEFVITKLDELVNWARRSSLWPMTFGLACCAVEMMHMAAPRYD 106 Query: 79 LERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY 138 ++RFG RASPRQ+DVM+VAGTLTNKMA ALR+VYDQMPEPRYV+SMGSCANGGGYYHY Sbjct: 107 MDRFGVVFRASPRQADVMVVAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGYYHY 166 Query: 139 SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 SYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQKKI+R ++ Sbjct: 167 SYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKIKREKRLR 212 >gi|46202360|ref|ZP_00053337.2| COG0377: NADH:ubiquinone oxidoreductase 20 kD subunit and related Fe-S oxidoreductases [Magnetospirillum magnetotacticum MS-1] Length = 186 Score = 252 bits (643), Expect = 2e-65, Method: Composition-based stats. Identities = 124/167 (74%), Positives = 139/167 (83%) Query: 17 CSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPR 76 DA +++EI+ KGF++ SVD +V WARTGSL MTFGLACCAVEMM A R Sbjct: 18 PPGPAQDALLKAVTTEISDKGFVLASVDAVVNWARTGSLWPMTFGLACCAVEMMHAGCSR 77 Query: 77 YDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY 136 YD++RFG R SPRQSD+MIVAGTLTNKMA ALRRVYDQM EPR+VISMGSCANGGGYY Sbjct: 78 YDMDRFGVVFRPSPRQSDLMIVAGTLTNKMAPALRRVYDQMAEPRWVISMGSCANGGGYY 137 Query: 137 HYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 HYSYSVVRGCDRIVPVDIYVPGCPP+AEAL+YGIL LQKKIRR G++ Sbjct: 138 HYSYSVVRGCDRIVPVDIYVPGCPPSAEALMYGILQLQKKIRRTGSI 184 >gi|254461551|ref|ZP_05074967.1| NADH dehydrogenase-ubiquinone oxidoreductase, chain b [Rhodobacterales bacterium HTCC2083] gi|206678140|gb|EDZ42627.1| NADH dehydrogenase-ubiquinone oxidoreductase, chain b [Rhodobacteraceae bacterium HTCC2083] Length = 181 Score = 252 bits (643), Expect = 2e-65, Method: Composition-based stats. Identities = 130/173 (75%), Positives = 147/173 (84%) Query: 11 ISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMM 70 S + + D + +++E+ KGFL+TS D ++ WARTGSL WMTFGLACCAVEMM Sbjct: 7 TSTGIATAGGDRDHGTAALNAELADKGFLLTSTDDIINWARTGSLHWMTFGLACCAVEMM 66 Query: 71 QASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCA 130 SMPRYDLERFG APRASPRQSD+MIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCA Sbjct: 67 HTSMPRYDLERFGTAPRASPRQSDLMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCA 126 Query: 131 NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGI+ LQ+K+RR G + Sbjct: 127 NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGIMQLQRKMRRTGTI 179 >gi|194212381|ref|XP_001503839.2| PREDICTED: similar to PSST subunit of the NADH: ubiquinone oxidoreductase complex [Equus caballus] Length = 259 Score = 252 bits (643), Expect = 2e-65, Method: Composition-based stats. Identities = 119/174 (68%), Positives = 140/174 (80%), Gaps = 1/174 (0%) Query: 12 SGQSSCSLEKVDADFSRISSEITHKG-FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMM 70 + ++ K A + ++ + +G ++VT +D LV WAR SL MTFGLACCAVEMM Sbjct: 81 PSSTQPAMSKAGAVVPKPTALPSSRGEYVVTKLDDLVNWARRSSLWPMTFGLACCAVEMM 140 Query: 71 QASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCA 130 + PRYD++RFG RASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYV+SMGSCA Sbjct: 141 HMAAPRYDMDRFGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCA 200 Query: 131 NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQ+KI+R ++ Sbjct: 201 NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQRKIKREKRLR 254 >gi|11466535|ref|NP_044784.1| NADH dehydrogenase subunit 10 [Reclinomonas americana] gi|6647649|sp|O21272|NDUS7_RECAM RecName: Full=NADH-ubiquinone oxidoreductase 20 kDa subunit; AltName: Full=NADH dehydrogenase subunit 10 gi|2258365|gb|AAD11899.1| NADH dehydrogenase subunit 10 [Reclinomonas americana] Length = 182 Score = 252 bits (643), Expect = 2e-65, Method: Composition-based stats. Identities = 115/158 (72%), Positives = 132/158 (83%) Query: 26 FSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA 85 F ++++ F+V+ +D+LV WAR GSL MTFGLACCAVEMM ++ RYDL+RFG Sbjct: 19 FMILNNKQNKTEFIVSKMDELVNWARKGSLWPMTFGLACCAVEMMHSAASRYDLDRFGII 78 Query: 86 PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRG 145 R SPRQSDVMIVAGTLTNKMA ALR+VYDQM EPR+V+SMGSCANGGGYYHYSYSVVRG Sbjct: 79 FRPSPRQSDVMIVAGTLTNKMAPALRKVYDQMSEPRWVVSMGSCANGGGYYHYSYSVVRG 138 Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 CDRIVPVDIYVPGCPPTAEAL+YG+L LQKKI+R Sbjct: 139 CDRIVPVDIYVPGCPPTAEALLYGLLQLQKKIKRSRKT 176 >gi|114799608|ref|YP_760447.1| NADH dehydrogenase subunit B [Hyphomonas neptunium ATCC 15444] gi|122942427|sp|Q0C1E6|NUOB_HYPNA RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|114739782|gb|ABI77907.1| NADH-quinone oxidoreductase, B subunit [Hyphomonas neptunium ATCC 15444] Length = 190 Score = 252 bits (643), Expect = 2e-65, Method: Composition-based stats. Identities = 128/171 (74%), Positives = 142/171 (83%) Query: 14 QSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQAS 73 D +S +S ++ KG+ + D L++WARTGSLMWMTFGLACCAVEMM A Sbjct: 19 DGGFKPGNDDPFYSGLSDQLADKGYFTAAADDLISWARTGSLMWMTFGLACCAVEMMHAG 78 Query: 74 MPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGG 133 PRYDLERFG APR SPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGG Sbjct: 79 NPRYDLERFGMAPRGSPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGG 138 Query: 134 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 GYYHYSYSVVRGCDRIVPVDIY+PGCPPTAEAL+YG L LQKKIRR G+++ Sbjct: 139 GYYHYSYSVVRGCDRIVPVDIYIPGCPPTAEALVYGFLQLQKKIRREGSIE 189 >gi|409251|gb|AAA03036.1| NADH dehydrogenase [Paracoccus denitrificans] Length = 174 Score = 252 bits (643), Expect = 2e-65, Method: Composition-based stats. Identities = 128/161 (79%), Positives = 143/161 (88%) Query: 23 DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82 D + ++ E+ KGFL+T+ + ++ WAR GSL WMTFGLACCAVEMMQ SMPRYDLERF Sbjct: 12 DLATAELNRELQDKGFLLTTTEDIINWARNGSLHWMTFGLACCAVEMMQTSMPRYDLERF 71 Query: 83 GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142 G APRASPRQSD+MIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSV Sbjct: 72 GTAPRASPRQSDLMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSV 131 Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 VRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQ++IRR G + Sbjct: 132 VRGCDRIVPVDIYVPGCPPTAEALLYGILQLQRRIRRTGTL 172 >gi|47217431|emb|CAG00791.1| unnamed protein product [Tetraodon nigroviridis] Length = 219 Score = 252 bits (643), Expect = 2e-65, Method: Composition-based stats. Identities = 112/151 (74%), Positives = 130/151 (86%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93 + +++T +D LV WAR SL MTFGLACCAVEMM + PRYD++RFG RASPRQ+ Sbjct: 64 SKGEYVITKLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQA 123 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD 153 DVMIVAGTLTNKMA ALR+VY+QMPEPRYVISMGSCANGGGYYHYSY+VVRGCDRIVPVD Sbjct: 124 DVMIVAGTLTNKMAPALRKVYEQMPEPRYVISMGSCANGGGYYHYSYAVVRGCDRIVPVD 183 Query: 154 IYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 IYVPGCPPTAEAL+YG+L LQ+KI+R ++ Sbjct: 184 IYVPGCPPTAEALLYGVLQLQRKIKREKKLR 214 >gi|268370120|ref|NP_001161241.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial [Nasonia vitripennis] Length = 217 Score = 252 bits (643), Expect = 2e-65, Method: Composition-based stats. Identities = 107/170 (62%), Positives = 132/170 (77%), Gaps = 2/170 (1%) Query: 15 SSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASM 74 S +EK S + + + +D L+ W R GS+ +TFGLACCAVEMM + Sbjct: 45 PSKPIEK--ESISPFPKKTNVVEYAMARLDDLLNWGRKGSMWPLTFGLACCAVEMMHIAA 102 Query: 75 PRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGG 134 PRYD++RFG RASPR +DV+IVAGT+TNKMA ALR+VYDQMP+P++VISMGSCANGGG Sbjct: 103 PRYDMDRFGVVFRASPRHADVIIVAGTVTNKMAPALRKVYDQMPDPKWVISMGSCANGGG 162 Query: 135 YYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 YYHYSYSVVRGCDRI+PVDIYVPGCPPTAEAL+YG+L LQKK++R+ + Sbjct: 163 YYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALLYGVLQLQKKVKRMETTQ 212 >gi|13543603|gb|AAH05954.1| NADH dehydrogenase (ubiquinone) Fe-S protein 7, 20kDa (NADH-coenzyme Q reductase) [Homo sapiens] gi|84105526|gb|AAI11518.1| NDUFS7 protein [Homo sapiens] gi|325464357|gb|ADZ15949.1| NADH dehydrogenase (ubiquinone) Fe-S protein 7, 20kDa (NADH-coenzyme Q reductase) [synthetic construct] Length = 213 Score = 252 bits (643), Expect = 2e-65, Method: Composition-based stats. Identities = 117/179 (65%), Positives = 138/179 (77%) Query: 6 VNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACC 65 V+Q + + S + + + + ++V +D LV WAR SL MTFGLACC Sbjct: 30 VHQSVATDGPSSTQPALPKARAVAPKPSSRGEYVVAKLDDLVNWARRSSLWPMTFGLACC 89 Query: 66 AVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVIS 125 AVEMM + PRYD++RFG RASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYV+S Sbjct: 90 AVEMMHMAAPRYDMDRFGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVVS 149 Query: 126 MGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 MGSCANGGGYYHYSYSVVRGCDRIVPVDIY+PGCPPTAEAL+YGIL LQ+KI+R ++ Sbjct: 150 MGSCANGGGYYHYSYSVVRGCDRIVPVDIYIPGCPPTAEALLYGILQLQRKIKRERRLQ 208 >gi|222148275|ref|YP_002549232.1| NADH dehydrogenase subunit B [Agrobacterium vitis S4] gi|238065049|sp|B9JVE6|NUOB_AGRVS RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|221735263|gb|ACM36226.1| NADH ubiqionone oxidoreductase chain B [Agrobacterium vitis S4] Length = 195 Score = 251 bits (642), Expect = 2e-65, Method: Composition-based stats. Identities = 135/183 (73%), Positives = 151/183 (82%), Gaps = 1/183 (0%) Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62 + + I+ + + F I+ E+ KGFLVTS L+TWARTGSLMWM FGL Sbjct: 12 VAPQPKGILDPATGKPVGNDSTFFGEINDELADKGFLVTSTQALITWARTGSLMWMQFGL 71 Query: 63 ACCAVE-MMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPR 121 ACCAVE +MQAS PRYD+ERFG APRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPR Sbjct: 72 ACCAVEGLMQASGPRYDMERFGVAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPR 131 Query: 122 YVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181 YVISMGSCANGGGYYHYSYSVVRGCDR+VPVDIYVPGCPPTAEAL+YG+LLLQKKIRR G Sbjct: 132 YVISMGSCANGGGYYHYSYSVVRGCDRVVPVDIYVPGCPPTAEALLYGVLLLQKKIRRTG 191 Query: 182 NVK 184 ++ Sbjct: 192 TIE 194 >gi|148284880|ref|YP_001248970.1| NADH dehydrogenase subunit B [Orientia tsutsugamushi str. Boryong] gi|189183819|ref|YP_001937604.1| NADH dehydrogenase subunit B [Orientia tsutsugamushi str. Ikeda] gi|218528000|sp|A5CES0|NUOB_ORITB RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|218528001|sp|B3CSG9|NUOB_ORITI RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|146740319|emb|CAM80723.1| NADH dehydrogenase I chain B [Orientia tsutsugamushi str. Boryong] gi|189180590|dbj|BAG40370.1| NADH dehydrogenase I chain B [Orientia tsutsugamushi str. Ikeda] Length = 171 Score = 251 bits (642), Expect = 2e-65, Method: Composition-based stats. Identities = 112/156 (71%), Positives = 133/156 (85%) Query: 29 ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88 + ++++GF++ +++ LV+WART SL MTFGLACCA+EMMQ + RYD++R+G R Sbjct: 13 YNQNLSNQGFILANLENLVSWARTRSLWPMTFGLACCAIEMMQTAGSRYDMDRYGMLFRP 72 Query: 89 SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 148 SPRQ+DVMIVAGTLTNKMA ALRRVYDQM EP++VISMGSCANGGGYYHYSYSVVRGCD+ Sbjct: 73 SPRQADVMIVAGTLTNKMAPALRRVYDQMTEPKWVISMGSCANGGGYYHYSYSVVRGCDK 132 Query: 149 IVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 IVPVDIYVPGCPPT EAL+YGIL LQKKI R VK Sbjct: 133 IVPVDIYVPGCPPTPEALLYGILQLQKKINRTQQVK 168 >gi|126727142|ref|ZP_01742979.1| NADH dehydrogenase subunit B [Rhodobacterales bacterium HTCC2150] gi|126703570|gb|EBA02666.1| NADH dehydrogenase subunit B [Rhodobacterales bacterium HTCC2150] Length = 176 Score = 251 bits (642), Expect = 3e-65, Method: Composition-based stats. Identities = 123/155 (79%), Positives = 141/155 (90%) Query: 29 ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88 ++ E+ KGFL+TS + ++ WARTGSL WMTFGLACCAVEMM +MPRYD+ERFG APRA Sbjct: 20 LNRELQDKGFLLTSTEDIINWARTGSLHWMTFGLACCAVEMMHTAMPRYDMERFGTAPRA 79 Query: 89 SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 148 SPRQSD+MIVAGTLTNKMA ALR+VYDQMPEPRYV+SMGSCANGGGYYHYSYSVVRGCDR Sbjct: 80 SPRQSDLMIVAGTLTNKMAPALRKVYDQMPEPRYVLSMGSCANGGGYYHYSYSVVRGCDR 139 Query: 149 IVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 +VPVD+YVPGCPPTAEAL+YG+L LQ+KIRR G + Sbjct: 140 VVPVDMYVPGCPPTAEALLYGLLQLQRKIRRTGTI 174 >gi|330813983|ref|YP_004358222.1| NADH-ubiquinone oxidoreductase chain B [Candidatus Pelagibacter sp. IMCC9063] gi|327487078|gb|AEA81483.1| NADH-ubiquinone oxidoreductase chain B [Candidatus Pelagibacter sp. IMCC9063] Length = 175 Score = 251 bits (642), Expect = 3e-65, Method: Composition-based stats. Identities = 132/170 (77%), Positives = 148/170 (87%) Query: 15 SSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASM 74 + L+ + +F ++ E T KGF+ D+L+ WARTGSL WMTFGLACCAVEMMQ SM Sbjct: 5 PAEKLKDIPKEFREVAEEFTEKGFVTIGSDRLINWARTGSLHWMTFGLACCAVEMMQTSM 64 Query: 75 PRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGG 134 PRYDLERFG APRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGG Sbjct: 65 PRYDLERFGAAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGG 124 Query: 135 YYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 YYHYSYSVVRGCD+IVPVDIYVPGCPP+AEAL+YGIL LQKKIRR G+++ Sbjct: 125 YYHYSYSVVRGCDKIVPVDIYVPGCPPSAEALLYGILQLQKKIRREGSLQ 174 >gi|90417843|ref|ZP_01225755.1| NADH dehydrogenase I, B subunit [Aurantimonas manganoxydans SI85-9A1] gi|90337515|gb|EAS51166.1| NADH dehydrogenase I, B subunit [Aurantimonas manganoxydans SI85-9A1] Length = 194 Score = 251 bits (642), Expect = 3e-65, Method: Composition-based stats. Identities = 139/193 (72%), Positives = 157/193 (81%), Gaps = 9/193 (4%) Query: 1 MGLTTVNQKIISGQSSC---------SLEKVDADFSRISSEITHKGFLVTSVDQLVTWAR 51 MGL ++ +++ S D + +++E+ KGFLVTS + L+ WAR Sbjct: 1 MGLIDTSRPLVAHAPSTDAGVAGPRTVAPAADPFVTDVNNELADKGFLVTSTEDLIQWAR 60 Query: 52 TGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALR 111 TGSLMWMTFGLACCAVEMMQ SMPRYD ERFGFAPRASPRQSDVMIVAGTLTNKMA ALR Sbjct: 61 TGSLMWMTFGLACCAVEMMQMSMPRYDAERFGFAPRASPRQSDVMIVAGTLTNKMAPALR 120 Query: 112 RVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171 +VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR+VPVDIYVPGCPPTAEAL+YG+L Sbjct: 121 KVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRVVPVDIYVPGCPPTAEALLYGVL 180 Query: 172 LLQKKIRRVGNVK 184 LLQKKIRR G ++ Sbjct: 181 LLQKKIRRTGTIE 193 >gi|260428201|ref|ZP_05782180.1| NADH-quinone oxidoreductase subunit b [Citreicella sp. SE45] gi|260422693|gb|EEX15944.1| NADH-quinone oxidoreductase subunit b [Citreicella sp. SE45] Length = 175 Score = 251 bits (642), Expect = 3e-65, Method: Composition-based stats. Identities = 131/174 (75%), Positives = 152/174 (87%), Gaps = 1/174 (0%) Query: 10 IISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEM 69 +++G ++ ++ + ++ E+ KGFL+TSVD ++ WARTGSL WMTFGLACCA+EM Sbjct: 1 MMTGPTTAGPDR-EVATQALNRELQDKGFLLTSVDDVINWARTGSLHWMTFGLACCAIEM 59 Query: 70 MQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSC 129 MQ SMPRYDLERFG APRASPRQSD+MIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSC Sbjct: 60 MQTSMPRYDLERFGTAPRASPRQSDLMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSC 119 Query: 130 ANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 ANGGGYYHYSYSVVRGCDRIVPVD+YVPGCPPTAEAL+YGI+ LQKKIRR G + Sbjct: 120 ANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALLYGIMALQKKIRRTGTI 173 >gi|218528070|sp|Q2NA61|NUOB_ERYLH RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B Length = 187 Score = 251 bits (642), Expect = 3e-65, Method: Composition-based stats. Identities = 127/181 (70%), Positives = 148/181 (81%), Gaps = 3/181 (1%) Query: 7 NQKIISGQSSCSLEKVDAD---FSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLA 63 N+ + ++ E D F+ + +E+ KGFLVTS + L WARTGSL WMTFGLA Sbjct: 6 NRALHDAPTARGGEVRQPDGDYFNALQTEVNDKGFLVTSTEDLFQWARTGSLWWMTFGLA 65 Query: 64 CCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYV 123 CCAVEM+ +MPRYD+ERFG APRASPRQSDVMIVAGTL NKMA ALR+VYDQM +P+YV Sbjct: 66 CCAVEMIHVNMPRYDMERFGAAPRASPRQSDVMIVAGTLCNKMAPALRKVYDQMSDPKYV 125 Query: 124 ISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 ISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG++ LQ+KIRR G + Sbjct: 126 ISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGVMQLQRKIRRSGTI 185 Query: 184 K 184 + Sbjct: 186 E 186 >gi|149914578|ref|ZP_01903108.1| NADH dehydrogenase subunit B [Roseobacter sp. AzwK-3b] gi|149811371|gb|EDM71206.1| NADH dehydrogenase subunit B [Roseobacter sp. AzwK-3b] Length = 177 Score = 251 bits (642), Expect = 3e-65, Method: Composition-based stats. Identities = 130/158 (82%), Positives = 142/158 (89%) Query: 26 FSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA 85 ++ E+ KGFLVTS + ++ WARTGSL WMTFGLACCAVEMM ASMPRYDLERFG A Sbjct: 18 TQDLNRELQDKGFLVTSTEDIINWARTGSLHWMTFGLACCAVEMMHASMPRYDLERFGTA 77 Query: 86 PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRG 145 PRASPRQSD+MIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRG Sbjct: 78 PRASPRQSDLMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRG 137 Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 CDRIVPVDIYVPGCPPTAEAL+YGI+ LQ+KIRR G + Sbjct: 138 CDRIVPVDIYVPGCPPTAEALVYGIMQLQRKIRRTGTI 175 >gi|332023286|gb|EGI63540.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial [Acromyrmex echinatior] Length = 224 Score = 251 bits (642), Expect = 3e-65, Method: Composition-based stats. Identities = 112/180 (62%), Positives = 132/180 (73%) Query: 5 TVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLAC 64 + ++ + +S + + D L+ W R GSL MTFGLAC Sbjct: 40 ATETSVQEAKTQLPEKSKVEPYSPFQKPSNMAEYALARADDLLNWGRKGSLWPMTFGLAC 99 Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 CAVEMM + PRYD++RFG RASPRQSDV+IVAGTLTNKMA ALRR+YDQMPEPR+VI Sbjct: 100 CAVEMMHIAAPRYDMDRFGVVFRASPRQSDVIIVAGTLTNKMAPALRRIYDQMPEPRWVI 159 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 SMGSCANGGGYYHYSYSVVRGCDRI+PVDIYVPGCPPTAEAL+YG+L LQKKI+R+ + Sbjct: 160 SMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALLYGVLQLQKKIKRMQTTQ 219 >gi|149202673|ref|ZP_01879645.1| NADH dehydrogenase subunit B [Roseovarius sp. TM1035] gi|149143955|gb|EDM31989.1| NADH dehydrogenase subunit B [Roseovarius sp. TM1035] Length = 177 Score = 251 bits (642), Expect = 3e-65, Method: Composition-based stats. Identities = 129/158 (81%), Positives = 143/158 (90%) Query: 26 FSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA 85 +++E+ KGFL+TS + ++ WARTGSL WMTFGLACCAVEMM +MPRYD+ERFGFA Sbjct: 18 TQALNAELQDKGFLLTSTEDIINWARTGSLHWMTFGLACCAVEMMHTAMPRYDVERFGFA 77 Query: 86 PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRG 145 PRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRG Sbjct: 78 PRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRG 137 Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 CDRIVPVDIYVPGCPPTAEAL+YGIL LQ+KIRR G + Sbjct: 138 CDRIVPVDIYVPGCPPTAEALVYGILQLQRKIRRTGTI 175 >gi|89067783|ref|ZP_01155237.1| NADH dehydrogenase beta subunit [Oceanicola granulosus HTCC2516] gi|89046753|gb|EAR52808.1| NADH dehydrogenase beta subunit [Oceanicola granulosus HTCC2516] Length = 204 Score = 251 bits (642), Expect = 3e-65, Method: Composition-based stats. Identities = 130/174 (74%), Positives = 146/174 (83%) Query: 10 IISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEM 69 + ++ + + ++ E+ KGFLVTS ++ WARTGSL WMTFGLACCAVEM Sbjct: 29 LTPYGANTAEGDKEVATQALNRELQDKGFLVTSTADIINWARTGSLHWMTFGLACCAVEM 88 Query: 70 MQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSC 129 M +SMPRYDLERFG APRASPRQSD+MIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSC Sbjct: 89 MHSSMPRYDLERFGTAPRASPRQSDLMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSC 148 Query: 130 ANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 ANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQ+KIRR G + Sbjct: 149 ANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQRKIRRTGTI 202 >gi|198431614|ref|XP_002130919.1| PREDICTED: similar to NADH-ubiquinone oxidoreductase Fe-S protein 7 [Ciona intestinalis] Length = 236 Score = 251 bits (642), Expect = 3e-65, Method: Composition-based stats. Identities = 115/174 (66%), Positives = 139/174 (79%) Query: 8 QKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAV 67 K I + + L+ + ++ SR+ + + ++ T +D LV + RT SL MTFGLACCAV Sbjct: 36 DKKIETEPAQVLQPIRSEISRLKNADSRGEYIATRIDDLVNYVRTNSLWPMTFGLACCAV 95 Query: 68 EMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMG 127 EMM + PRYD++RFG RASPRQSD+MIVAGTLTNKMA ALRRVYDQM +P++V+SMG Sbjct: 96 EMMHFAAPRYDMDRFGVVFRASPRQSDLMIVAGTLTNKMAPALRRVYDQMADPKWVLSMG 155 Query: 128 SCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181 SCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG+L LQKK+RR Sbjct: 156 SCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGVLQLQKKVRRTK 209 >gi|315583009|ref|NP_001186841.1| NADH dehydrogenase (ubiquinone) Fe-S protein 7, (NADH-coenzyme Q reductase) [Danio rerio] Length = 217 Score = 251 bits (642), Expect = 3e-65, Method: Composition-based stats. Identities = 121/166 (72%), Positives = 139/166 (83%), Gaps = 1/166 (0%) Query: 20 EKVDADFSRISSEITHKG-FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78 EK A ++ +S ++ KG +++T +D LV WAR SL MTFGLACCAVEMM + PRYD Sbjct: 47 EKSTALAAKPASAVSSKGEYVITKLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPRYD 106 Query: 79 LERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY 138 ++RFG RASPRQ+DVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHY Sbjct: 107 MDRFGVVFRASPRQADVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHY 166 Query: 139 SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 SYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG L LQ+KI+R +K Sbjct: 167 SYSVVRGCDRIVPVDIYVPGCPPTAEALLYGTLQLQRKIKREKRMK 212 >gi|119589914|gb|EAW69508.1| NADH dehydrogenase (ubiquinone) Fe-S protein 7, 20kDa (NADH-coenzyme Q reductase), isoform CRA_b [Homo sapiens] Length = 224 Score = 251 bits (642), Expect = 3e-65, Method: Composition-based stats. Identities = 117/179 (65%), Positives = 138/179 (77%) Query: 6 VNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACC 65 V+Q + + S + + + + ++V +D LV WAR SL MTFGLACC Sbjct: 41 VHQSVATDGPSSTQPALPKARAVAPKPSSRGEYVVAKLDDLVNWARRSSLWPMTFGLACC 100 Query: 66 AVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVIS 125 AVEMM + PRYD++RFG RASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYV+S Sbjct: 101 AVEMMHMAAPRYDMDRFGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVVS 160 Query: 126 MGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 MGSCANGGGYYHYSYSVVRGCDRIVPVDIY+PGCPPTAEAL+YGIL LQ+KI+R ++ Sbjct: 161 MGSCANGGGYYHYSYSVVRGCDRIVPVDIYIPGCPPTAEALLYGILQLQRKIKRERRLQ 219 >gi|148555890|ref|YP_001263472.1| NADH dehydrogenase subunit B [Sphingomonas wittichii RW1] gi|218528008|sp|A5VAL8|NUOB_SPHWW RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|148501080|gb|ABQ69334.1| NADH-quinone oxidoreductase, B subunit [Sphingomonas wittichii RW1] Length = 187 Score = 251 bits (641), Expect = 3e-65, Method: Composition-based stats. Identities = 131/186 (70%), Positives = 148/186 (79%), Gaps = 2/186 (1%) Query: 1 MGLTTVNQKIISGQSSCS--LEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWM 58 MG+T + + F + +E+ KGFLVTS ++L WARTGSL WM Sbjct: 1 MGVTLDSALNPHKPEGFGEVVAPDPDYFKALQAEVNDKGFLVTSAEELFQWARTGSLWWM 60 Query: 59 TFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMP 118 TFGLACCAVEM+ +MPRYDLERFG APRASPRQSDVMIVAGTL NKMA ALRRVYDQM Sbjct: 61 TFGLACCAVEMIHVNMPRYDLERFGAAPRASPRQSDVMIVAGTLCNKMAPALRRVYDQMS 120 Query: 119 EPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 EP+YVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGI+ LQ+KIR Sbjct: 121 EPKYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGIMQLQRKIR 180 Query: 179 RVGNVK 184 R+G ++ Sbjct: 181 RIGTLE 186 >gi|159031992|ref|NP_001103713.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial precursor [Pan troglodytes] gi|115502489|sp|Q0MQI0|NDUS7_PANTR RecName: Full=NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial; AltName: Full=Complex I-20kD; Short=CI-20kD; AltName: Full=NADH-ubiquinone oxidoreductase 20 kDa subunit; Flags: Precursor gi|111661826|gb|ABH12163.1| mitochondrial complex I subunit NDUFS7 [Pan troglodytes] Length = 213 Score = 251 bits (641), Expect = 3e-65, Method: Composition-based stats. Identities = 117/180 (65%), Positives = 139/180 (77%) Query: 5 TVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLAC 64 +V+Q + + S + + + + ++V +D LV WAR SL MTFGLAC Sbjct: 29 SVHQSVATDGPSSTQPALPKARAVAPKPSSRGEYVVAKLDDLVNWARRSSLWPMTFGLAC 88 Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 CAVEMM + PRYD++RFG RASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYV+ Sbjct: 89 CAVEMMHMAAPRYDMDRFGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVV 148 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIY+PGCPPTAEAL+YGIL LQ+KI+R ++ Sbjct: 149 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYIPGCPPTAEALLYGILQLQRKIKRERRLQ 208 >gi|119384981|ref|YP_916037.1| NADH dehydrogenase subunit B [Paracoccus denitrificans PD1222] gi|218527939|sp|A1B497|NUOB_PARDP RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NADH dehydrogenase I, subunit 6; AltName: Full=NADH-quinone oxidoreductase subunit 6; Short=NQO6; AltName: Full=NDH-1 subunit B; AltName: Full=NDH-1, subunit 6 gi|119374748|gb|ABL70341.1| NADH dehydrogenase subunit B [Paracoccus denitrificans PD1222] Length = 175 Score = 251 bits (641), Expect = 3e-65, Method: Composition-based stats. Identities = 128/161 (79%), Positives = 143/161 (88%) Query: 23 DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82 D + ++ E+ KGFL+T+ + ++ WAR GSL WMTFGLACCAVEMMQ SMPRYDLERF Sbjct: 13 DLATAELNRELQDKGFLLTTTEDIINWARNGSLHWMTFGLACCAVEMMQTSMPRYDLERF 72 Query: 83 GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142 G APRASPRQSD+MIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSV Sbjct: 73 GTAPRASPRQSDLMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSV 132 Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 VRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQ++IRR G + Sbjct: 133 VRGCDRIVPVDIYVPGCPPTAEALLYGILQLQRRIRRTGTL 173 >gi|198285499|gb|ACH85288.1| NADH-ubiquinone oxidoreductase Fe-S protein 7 [Salmo salar] Length = 215 Score = 251 bits (641), Expect = 3e-65, Method: Composition-based stats. Identities = 114/151 (75%), Positives = 129/151 (85%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93 + +++T +D LV WAR SL MTFGLACCAVEMM + PRYD++RFG RASPRQ+ Sbjct: 60 SKGEYVITKLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQA 119 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD 153 DVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSY+VVRGCDRIVPVD Sbjct: 120 DVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYAVVRGCDRIVPVD 179 Query: 154 IYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 IYVPGCPPTAEAL+YG L LQKKI+R ++ Sbjct: 180 IYVPGCPPTAEALLYGTLQLQKKIKREKKMR 210 >gi|221108593|ref|XP_002170450.1| PREDICTED: similar to NADH-ubiquinone oxidoreductase Fe-S protein 7, partial [Hydra magnipapillata] Length = 198 Score = 251 bits (641), Expect = 4e-65, Method: Composition-based stats. Identities = 122/183 (66%), Positives = 139/183 (75%), Gaps = 1/183 (0%) Query: 2 GLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFG 61 + +QK + E+ A S+ S F+V VD LV WAR SL MTFG Sbjct: 12 AVAKEDQKCTATSLVPYREQSTA-TSKPSLVSNAAEFVVAKVDDLVNWARRSSLWPMTFG 70 Query: 62 LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPR 121 LACCAVEMM + PRYD++RFG RASPRQ+DVMIVAGTLTNKMA ALRRVYDQMPEPR Sbjct: 71 LACCAVEMMHFAAPRYDMDRFGVVFRASPRQADVMIVAGTLTNKMAPALRRVYDQMPEPR 130 Query: 122 YVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181 +VISMGSCANGGGYYHYSY+VVRGCDR+VPVDIYVPGCPPTAEAL+YG+L LQKKI+R Sbjct: 131 WVISMGSCANGGGYYHYSYAVVRGCDRVVPVDIYVPGCPPTAEALLYGVLQLQKKIKRTR 190 Query: 182 NVK 184 +K Sbjct: 191 EIK 193 >gi|310816715|ref|YP_003964679.1| NADH-quinone oxidoreductase, B subunit [Ketogulonicigenium vulgare Y25] gi|308755450|gb|ADO43379.1| NADH-quinone oxidoreductase, B subunit [Ketogulonicigenium vulgare Y25] Length = 188 Score = 251 bits (641), Expect = 4e-65, Method: Composition-based stats. Identities = 131/181 (72%), Positives = 147/181 (81%) Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62 L+T Q + + + D + + KGFLVTS ++ WARTGSL WMTFGL Sbjct: 6 LSTGAQGSVQTGRNSAGADADHAALVLGRAVQDKGFLVTSTADIINWARTGSLHWMTFGL 65 Query: 63 ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122 ACCAVEMMQ SMPRYDLERFG APRASPRQ+D+MIVAGTLTNKMA ALR+VYDQMPEPRY Sbjct: 66 ACCAVEMMQLSMPRYDLERFGTAPRASPRQADLMIVAGTLTNKMAPALRKVYDQMPEPRY 125 Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182 VISMGSCANGGGYYHYSYSVVRGCDRIVPVD+YVPGCPPTAEAL+YGI+ LQ+KIRR G Sbjct: 126 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALLYGIMQLQRKIRRTGT 185 Query: 183 V 183 + Sbjct: 186 I 186 >gi|103486796|ref|YP_616357.1| NADH dehydrogenase subunit B [Sphingopyxis alaskensis RB2256] gi|122985072|sp|Q1GTJ8|NUOB_SPHAL RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|98976873|gb|ABF53024.1| NADH-quinone oxidoreductase, B subunit [Sphingopyxis alaskensis RB2256] Length = 177 Score = 251 bits (641), Expect = 4e-65, Method: Composition-based stats. Identities = 126/171 (73%), Positives = 141/171 (82%) Query: 14 QSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQAS 73 + + F +S E+ KGFLVTS + L WARTGSL WMTFGLACCAVEM+ + Sbjct: 6 PVAPGTNPDQSFFDDLSGEVGDKGFLVTSTEDLFNWARTGSLWWMTFGLACCAVEMIHVN 65 Query: 74 MPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGG 133 MPRYD+ERFG APRASPRQSDVMIVAGTL NKMA ALRRVYDQM P+YVISMGSCANGG Sbjct: 66 MPRYDMERFGVAPRASPRQSDVMIVAGTLCNKMAPALRRVYDQMSNPKYVISMGSCANGG 125 Query: 134 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG++ LQ+KIRR G ++ Sbjct: 126 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGVMQLQRKIRRTGTIE 176 >gi|299471504|emb|CBN79990.1| NUO10 homolog, NADH dehydrogenase (ubiquinone) subunit 10 [Ectocarpus siliculosus] Length = 225 Score = 251 bits (641), Expect = 4e-65, Method: Composition-based stats. Identities = 118/173 (68%), Positives = 135/173 (78%) Query: 11 ISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMM 70 + +S L + + + F+V+ VD LV WAR GSL MTFGLACCAVEMM Sbjct: 47 MRKPTSSELTRAENVDQLMQQGKGGVEFVVSKVDDLVNWARKGSLWPMTFGLACCAVEMM 106 Query: 71 QASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCA 130 ++ RYDLERFG RASPRQSDVMIVAGTL NKMA ALR+VYDQMPEPR+V+SMGSCA Sbjct: 107 HSAASRYDLERFGMVFRASPRQSDVMIVAGTLCNKMAPALRKVYDQMPEPRWVVSMGSCA 166 Query: 131 NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG+L LQKKI+ ++ Sbjct: 167 NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGLLQLQKKIKGNKSL 219 >gi|297275661|ref|XP_002808210.1| PREDICTED: LOW QUALITY PROTEIN: NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial-like [Macaca mulatta] Length = 362 Score = 251 bits (641), Expect = 4e-65, Method: Composition-based stats. Identities = 118/179 (65%), Positives = 139/179 (77%) Query: 6 VNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACC 65 V+Q + + S + + + + + ++V +D LV WAR SL MTFGLACC Sbjct: 179 VHQSVATDGPSSAQPALPKAGAMVPKPSSRGEYVVAKLDDLVNWARRSSLWPMTFGLACC 238 Query: 66 AVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVIS 125 AVEMM + PRYD++RFG RASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVIS Sbjct: 239 AVEMMHMAAPRYDMDRFGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVIS 298 Query: 126 MGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 MGSCANGGGYYHYSYSVVRGCDRIVPVDIY+PGCPPTAEAL+YG+L LQ+KI+R V+ Sbjct: 299 MGSCANGGGYYHYSYSVVRGCDRIVPVDIYIPGCPPTAEALLYGVLQLQRKIKRERKVQ 357 >gi|254420093|ref|ZP_05033817.1| NADH-quinone oxidoreductase, B subunit subfamily [Brevundimonas sp. BAL3] gi|196186270|gb|EDX81246.1| NADH-quinone oxidoreductase, B subunit subfamily [Brevundimonas sp. BAL3] Length = 173 Score = 251 bits (641), Expect = 4e-65, Method: Composition-based stats. Identities = 123/161 (76%), Positives = 143/161 (88%) Query: 23 DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82 D F ++ E+ +GFL S+D ++TWARTGSLMWMTFGLACCAVEM+Q SMPR+D+ERF Sbjct: 11 DKFFESVNMELGERGFLTASLDDVITWARTGSLMWMTFGLACCAVEMIQMSMPRFDVERF 70 Query: 83 GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142 G APR SPR SD+MIVAGTLTNKMA A+R+VYDQMP+PRYV+SMGSCANGGGYYHYSYSV Sbjct: 71 GMAPRGSPRHSDLMIVAGTLTNKMAPAIRKVYDQMPDPRYVVSMGSCANGGGYYHYSYSV 130 Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 VRGCDR+VPVD+YVPGCPPTAEAL+YG+L LQKKIRR G + Sbjct: 131 VRGCDRVVPVDVYVPGCPPTAEALLYGLLQLQKKIRRTGTI 171 >gi|126736072|ref|ZP_01751816.1| NADH dehydrogenase beta subunit [Roseobacter sp. CCS2] gi|126714629|gb|EBA11496.1| NADH dehydrogenase beta subunit [Roseobacter sp. CCS2] Length = 176 Score = 251 bits (641), Expect = 4e-65, Method: Composition-based stats. Identities = 131/155 (84%), Positives = 141/155 (90%) Query: 29 ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88 I+SE+ KGFLVTS +V WARTGSL WMTFGLACCAVEMM SMPRYDLERFG APRA Sbjct: 20 INSELQDKGFLVTSTADIVNWARTGSLHWMTFGLACCAVEMMHTSMPRYDLERFGTAPRA 79 Query: 89 SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 148 SPRQSD+MIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR Sbjct: 80 SPRQSDLMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 139 Query: 149 IVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 IVPVD+YVPGCPPTAEAL+YGIL LQ+K+RR G + Sbjct: 140 IVPVDVYVPGCPPTAEALLYGILQLQRKMRRTGTI 174 >gi|85703212|ref|ZP_01034316.1| NADH dehydrogenase beta subunit [Roseovarius sp. 217] gi|85672140|gb|EAQ26997.1| NADH dehydrogenase beta subunit [Roseovarius sp. 217] Length = 174 Score = 251 bits (641), Expect = 4e-65, Method: Composition-based stats. Identities = 128/169 (75%), Positives = 147/169 (86%) Query: 15 SSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASM 74 ++ + + +++E+ KG+L+TS + ++ WARTGSL WMTFGLACCAVEMM +M Sbjct: 4 ANTAGPDREVATQALNAELQDKGYLLTSTEDIINWARTGSLHWMTFGLACCAVEMMHTAM 63 Query: 75 PRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGG 134 PRYD+ERFGFAPRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGG Sbjct: 64 PRYDVERFGFAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGG 123 Query: 135 YYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 YYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQ+KIRR G + Sbjct: 124 YYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALVYGILQLQRKIRRTGTI 172 >gi|332185849|ref|ZP_08387596.1| NADH-quinone oxidoreductase, B subunit [Sphingomonas sp. S17] gi|332014207|gb|EGI56265.1| NADH-quinone oxidoreductase, B subunit [Sphingomonas sp. S17] Length = 194 Score = 251 bits (641), Expect = 4e-65, Method: Composition-based stats. Identities = 126/171 (73%), Positives = 144/171 (84%) Query: 14 QSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQAS 73 ++ F ++ E+T KGFLVTS ++L WARTGSL WMTFGLACCAVEM+ + Sbjct: 23 DGQAVIQPDQGFFDGLNGELTDKGFLVTSTEELFQWARTGSLWWMTFGLACCAVEMIHVN 82 Query: 74 MPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGG 133 MPRYD+ERFG APRASPRQSDVMIVAGTL NKMA ALRRVYDQM P+YVISMGSCANGG Sbjct: 83 MPRYDMERFGAAPRASPRQSDVMIVAGTLCNKMAPALRRVYDQMSNPKYVISMGSCANGG 142 Query: 134 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG++ LQ+KIRR G+++ Sbjct: 143 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGVMQLQRKIRRAGSIE 193 >gi|157825617|ref|YP_001493337.1| NADH dehydrogenase subunit B [Rickettsia akari str. Hartford] gi|218528016|sp|A8GN54|NUOB_RICAH RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|157799575|gb|ABV74829.1| NADH dehydrogenase subunit B [Rickettsia akari str. Hartford] Length = 174 Score = 251 bits (641), Expect = 4e-65, Method: Composition-based stats. Identities = 112/158 (70%), Positives = 135/158 (85%) Query: 27 SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP 86 +++EI+++GFL+T +D ++ WAR SL MTFGLACCAVEMMQA+ RYD++RFG Sbjct: 10 ELLNNEISNRGFLLTKIDDIIGWARAHSLWPMTFGLACCAVEMMQAASSRYDMDRFGMLF 69 Query: 87 RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGC 146 R SPRQSD+MIVAGTLTNKMA ALR+VYDQM P++V+SMGSCANGGGYYH+SYSVVRGC Sbjct: 70 RPSPRQSDLMIVAGTLTNKMAPALRKVYDQMAVPKWVLSMGSCANGGGYYHFSYSVVRGC 129 Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 DRIVPVD+YVPGCPPTAEALIYG++ LQKKI+R K Sbjct: 130 DRIVPVDVYVPGCPPTAEALIYGLMQLQKKIKRTTGFK 167 >gi|326387461|ref|ZP_08209070.1| NADH dehydrogenase subunit B [Novosphingobium nitrogenifigens DSM 19370] gi|326208117|gb|EGD58925.1| NADH dehydrogenase subunit B [Novosphingobium nitrogenifigens DSM 19370] Length = 183 Score = 250 bits (640), Expect = 4e-65, Method: Composition-based stats. Identities = 126/182 (69%), Positives = 149/182 (81%) Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62 + + + + L A F +++E++ KGFLVTS ++L WARTGSL WMTFGL Sbjct: 1 MNDMATSPATVGGANVLAPDQAFFDSLNAEVSDKGFLVTSTEELFQWARTGSLWWMTFGL 60 Query: 63 ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122 ACCAVEM+ +MPRYD+ERFG APRASPRQSDVMIVAGTL NKMA ALR+VYDQM +P+Y Sbjct: 61 ACCAVEMIHVNMPRYDMERFGVAPRASPRQSDVMIVAGTLCNKMAPALRKVYDQMSDPKY 120 Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG++ LQ+KIRR G Sbjct: 121 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGVMQLQRKIRRAGT 180 Query: 183 VK 184 ++ Sbjct: 181 LE 182 >gi|115502488|sp|Q0MQH9|NDUS7_GORGO RecName: Full=NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial; AltName: Full=Complex I-20kD; Short=CI-20kD; AltName: Full=NADH-ubiquinone oxidoreductase 20 kDa subunit; Flags: Precursor gi|269969394|sp|P0CB84|NDUS7_PONPY RecName: Full=NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial; AltName: Full=Complex I-20kD; Short=CI-20kD; AltName: Full=NADH-ubiquinone oxidoreductase 20 kDa subunit; Flags: Precursor gi|111661828|gb|ABH12164.1| mitochondrial complex I subunit NDUFS7 [Gorilla gorilla] gi|111661830|gb|ABH12165.1| mitochondrial complex I subunit NDUFS7 [Pongo pygmaeus] Length = 213 Score = 250 bits (640), Expect = 4e-65, Method: Composition-based stats. Identities = 117/179 (65%), Positives = 138/179 (77%) Query: 6 VNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACC 65 V+Q + + S + + + + ++V +D LV WAR SL MTFGLACC Sbjct: 30 VHQSVATDGPSSTQPALPKARAVAPKPSSRGEYVVAKLDDLVNWARRSSLWPMTFGLACC 89 Query: 66 AVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVIS 125 AVEMM + PRYD++RFG RASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYV+S Sbjct: 90 AVEMMHMAAPRYDMDRFGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVVS 149 Query: 126 MGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 MGSCANGGGYYHYSYSVVRGCDRIVPVDIY+PGCPPTAEAL+YGIL LQ+KI+R ++ Sbjct: 150 MGSCANGGGYYHYSYSVVRGCDRIVPVDIYIPGCPPTAEALLYGILQLQRKIKRERRLQ 208 >gi|34189943|gb|AAH01715.2| NDUFS7 protein [Homo sapiens] Length = 208 Score = 250 bits (640), Expect = 4e-65, Method: Composition-based stats. Identities = 117/179 (65%), Positives = 138/179 (77%) Query: 6 VNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACC 65 V+Q + + S + + + + ++V +D LV WAR SL MTFGLACC Sbjct: 25 VHQSVATDGPSSTQPALPKARAVAPKPSSRGEYVVAKLDDLVNWARRSSLWPMTFGLACC 84 Query: 66 AVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVIS 125 AVEMM + PRYD++RFG RASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYV+S Sbjct: 85 AVEMMHMAAPRYDMDRFGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVVS 144 Query: 126 MGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 MGSCANGGGYYHYSYSVVRGCDRIVPVDIY+PGCPPTAEAL+YGIL LQ+KI+R ++ Sbjct: 145 MGSCANGGGYYHYSYSVVRGCDRIVPVDIYIPGCPPTAEALLYGILQLQRKIKRERRLQ 203 >gi|84516742|ref|ZP_01004100.1| NADH dehydrogenase beta subunit [Loktanella vestfoldensis SKA53] gi|84509210|gb|EAQ05669.1| NADH dehydrogenase beta subunit [Loktanella vestfoldensis SKA53] Length = 173 Score = 250 bits (640), Expect = 4e-65, Method: Composition-based stats. Identities = 129/155 (83%), Positives = 141/155 (90%) Query: 29 ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88 +++E+ KGFLVTS ++ WARTGSL WMTFGLACCAVEMM SMPRYDLERFG APRA Sbjct: 17 LNAELQDKGFLVTSTADVINWARTGSLHWMTFGLACCAVEMMHTSMPRYDLERFGTAPRA 76 Query: 89 SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 148 SPRQSD+MIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR Sbjct: 77 SPRQSDLMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 136 Query: 149 IVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 IVPVDIYVPGCPPTAEAL+YGIL LQ+K+RR G + Sbjct: 137 IVPVDIYVPGCPPTAEALLYGILQLQRKMRRTGTI 171 >gi|319408580|emb|CBI82235.1| NADH dehydrogenase I, B subunit [Bartonella schoenbuchensis R1] Length = 176 Score = 250 bits (640), Expect = 4e-65, Method: Composition-based stats. Identities = 137/162 (84%), Positives = 150/162 (92%) Query: 23 DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82 D F I++E++ KGFLVTS D L+TWARTGSLMWM+FGLACCAVEMMQ SMP YD ERF Sbjct: 14 DKFFHDINAELSDKGFLVTSADALITWARTGSLMWMSFGLACCAVEMMQCSMPHYDNERF 73 Query: 83 GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142 G+APRASPRQSDVM+VAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSV Sbjct: 74 GYAPRASPRQSDVMVVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSV 133 Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 VRGCDRIVPVDIYVPGCPPTAEAL+YGILLLQKKIRR G+++ Sbjct: 134 VRGCDRIVPVDIYVPGCPPTAEALLYGILLLQKKIRRTGSIE 175 >gi|15604224|ref|NP_220740.1| NADH dehydrogenase subunit B [Rickettsia prowazekii str. Madrid E] gi|6647678|sp|Q9ZDH2|NUOB_RICPR RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|3860916|emb|CAA14816.1| NADH DEHYDROGENASE I CHAIN B (nuoB) [Rickettsia prowazekii] gi|292571965|gb|ADE29880.1| NADH dehydrogenase I chain B [Rickettsia prowazekii Rp22] Length = 174 Score = 250 bits (640), Expect = 5e-65, Method: Composition-based stats. Identities = 113/158 (71%), Positives = 137/158 (86%) Query: 27 SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP 86 ++S +T++GFL++ VD++++WAR SL MTFGLACCAVEMMQA+ RYD++RFG Sbjct: 10 ELLNSGLTNRGFLLSKVDEVISWARANSLWPMTFGLACCAVEMMQAAASRYDMDRFGMLF 69 Query: 87 RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGC 146 R SPRQSD+MIVAGTLTNKMA ALR+VYDQM EP++V+SMGSCANGGGYYH+SYSVVRGC Sbjct: 70 RPSPRQSDLMIVAGTLTNKMAPALRKVYDQMTEPKWVLSMGSCANGGGYYHFSYSVVRGC 129 Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 DRIVPVD+YVPGCPPTAEALIYG++ LQKKI+R K Sbjct: 130 DRIVPVDVYVPGCPPTAEALIYGLMQLQKKIKRTTGFK 167 >gi|187281616|ref|NP_077718.3| NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial precursor [Homo sapiens] gi|90110040|sp|O75251|NDUS7_HUMAN RecName: Full=NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial; AltName: Full=Complex I-20kD; Short=CI-20kD; AltName: Full=NADH-ubiquinone oxidoreductase 20 kDa subunit; AltName: Full=PSST subunit; Flags: Precursor gi|33150724|gb|AAP97240.1|AF115969_1 NADH:ubiquinone oxidoreductase PSST subunit [Homo sapiens] gi|62897035|dbj|BAD96458.1| NADH-ubiquinone oxidoreductase Fe-S protein 7 variant [Homo sapiens] Length = 213 Score = 250 bits (640), Expect = 5e-65, Method: Composition-based stats. Identities = 117/179 (65%), Positives = 138/179 (77%) Query: 6 VNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACC 65 V+Q + + S + + + + ++V +D LV WAR SL MTFGLACC Sbjct: 30 VHQSVATDGPSSTQPALPKARAVAPKPSSRGEYVVAKLDDLVNWARRSSLWPMTFGLACC 89 Query: 66 AVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVIS 125 AVEMM + PRYD++RFG RASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYV+S Sbjct: 90 AVEMMHMAAPRYDMDRFGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVVS 149 Query: 126 MGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 MGSCANGGGYYHYSYSVVRGCDRIVPVDIY+PGCPPTAEAL+YGIL LQ+KI+R ++ Sbjct: 150 MGSCANGGGYYHYSYSVVRGCDRIVPVDIYIPGCPPTAEALLYGILQLQRKIKRERRLQ 208 >gi|84686428|ref|ZP_01014322.1| NADH dehydrogenase beta subunit [Maritimibacter alkaliphilus HTCC2654] gi|84665611|gb|EAQ12087.1| NADH dehydrogenase beta subunit [Rhodobacterales bacterium HTCC2654] Length = 174 Score = 250 bits (640), Expect = 5e-65, Method: Composition-based stats. Identities = 127/156 (81%), Positives = 144/156 (92%) Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87 ++S E+ KGFL+T+ D ++ WARTGSL WMTFGLACCAVEMMQ+SMPRYDLER+G APR Sbjct: 17 QLSDELQDKGFLLTTTDDIINWARTGSLHWMTFGLACCAVEMMQSSMPRYDLERYGTAPR 76 Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCD 147 ASPRQSD+MIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCD Sbjct: 77 ASPRQSDLMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCD 136 Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 R+VPVD+YVPGCPP+AEAL+YGIL LQ+KIRR G + Sbjct: 137 RVVPVDVYVPGCPPSAEALVYGILQLQRKIRRTGTI 172 >gi|84502605|ref|ZP_01000724.1| NADH dehydrogenase beta subunit [Oceanicola batsensis HTCC2597] gi|84389000|gb|EAQ01798.1| NADH dehydrogenase beta subunit [Oceanicola batsensis HTCC2597] Length = 207 Score = 250 bits (639), Expect = 5e-65, Method: Composition-based stats. Identities = 127/158 (80%), Positives = 139/158 (87%) Query: 26 FSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA 85 ++ E+ KGFL+TS + L+ WARTGSL WMTFGLACCAVEMM SMPRYD ERFG A Sbjct: 48 TQALNKELQDKGFLLTSTEDLINWARTGSLHWMTFGLACCAVEMMHTSMPRYDAERFGIA 107 Query: 86 PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRG 145 PRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYV+SMGSCANGGGYYHYSYSVVRG Sbjct: 108 PRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGYYHYSYSVVRG 167 Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 CDRIVPVDIYVPGCPPTAEAL+YGI+ L +KIRR G + Sbjct: 168 CDRIVPVDIYVPGCPPTAEALLYGIMQLARKIRRTGTI 205 >gi|110225660|ref|YP_665666.1| NADH dehydrogenase subunit 10 [Nephroselmis olivacea] gi|6066175|gb|AAF03193.1|AF110138_25 NADH dehydrogenase subunit 10 [Nephroselmis olivacea] Length = 158 Score = 250 bits (639), Expect = 6e-65, Method: Composition-based stats. Identities = 115/149 (77%), Positives = 127/149 (85%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93 + FL+T +D L+ WAR GS+ MTFGLACCAVEMM RYDL+RFG R SPRQS Sbjct: 3 NNAEFLLTGIDSLLNWARKGSMWPMTFGLACCAVEMMHCGASRYDLDRFGIIFRPSPRQS 62 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD 153 DVMIVAGTLTNKMA ALR+VYDQMPEPR+V+SMGSCANGGGYYHYSYSVVRGCDRIVPVD Sbjct: 63 DVMIVAGTLTNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIVPVD 122 Query: 154 IYVPGCPPTAEALIYGILLLQKKIRRVGN 182 IYVPGCPPTAEAL+YG+L LQKKI+R N Sbjct: 123 IYVPGCPPTAEALLYGLLQLQKKIQRTNN 151 >gi|209730616|gb|ACI66177.1| NADH dehydrogenase iron-sulfur protein 7, mitochondrial precursor [Salmo salar] gi|209731354|gb|ACI66546.1| NADH dehydrogenase iron-sulfur protein 7, mitochondrial precursor [Salmo salar] gi|223646164|gb|ACN09840.1| NADH dehydrogenase iron-sulfur protein 7, mitochondrial precursor [Salmo salar] gi|223672011|gb|ACN12187.1| NADH dehydrogenase iron-sulfur protein 7, mitochondrial precursor [Salmo salar] gi|303660793|gb|ADM16006.1| NADH dehydrogenase iron-sulfur protein 7, mitochondrial precursor [Salmo salar] Length = 220 Score = 250 bits (639), Expect = 6e-65, Method: Composition-based stats. Identities = 114/151 (75%), Positives = 129/151 (85%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93 + +++T +D LV WAR SL MTFGLACCAVEMM + PRYD++RFG RASPRQ+ Sbjct: 65 SKGEYVITKLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQA 124 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD 153 DVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSY+VVRGCDRIVPVD Sbjct: 125 DVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYAVVRGCDRIVPVD 184 Query: 154 IYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 IYVPGCPPTAEAL+YG L LQKKI+R ++ Sbjct: 185 IYVPGCPPTAEALLYGTLQLQKKIKREKKMR 215 >gi|119589913|gb|EAW69507.1| NADH dehydrogenase (ubiquinone) Fe-S protein 7, 20kDa (NADH-coenzyme Q reductase), isoform CRA_a [Homo sapiens] Length = 298 Score = 250 bits (639), Expect = 6e-65, Method: Composition-based stats. Identities = 117/179 (65%), Positives = 138/179 (77%) Query: 6 VNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACC 65 V+Q + + S + + + + ++V +D LV WAR SL MTFGLACC Sbjct: 115 VHQSVATDGPSSTQPALPKARAVAPKPSSRGEYVVAKLDDLVNWARRSSLWPMTFGLACC 174 Query: 66 AVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVIS 125 AVEMM + PRYD++RFG RASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYV+S Sbjct: 175 AVEMMHMAAPRYDMDRFGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVVS 234 Query: 126 MGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 MGSCANGGGYYHYSYSVVRGCDRIVPVDIY+PGCPPTAEAL+YGIL LQ+KI+R ++ Sbjct: 235 MGSCANGGGYYHYSYSVVRGCDRIVPVDIYIPGCPPTAEALLYGILQLQRKIKRERRLQ 293 >gi|225707068|gb|ACO09380.1| NADH dehydrogenase iron-sulfur protein 7, mitochondrial precursor [Osmerus mordax] Length = 220 Score = 250 bits (638), Expect = 7e-65, Method: Composition-based stats. Identities = 115/152 (75%), Positives = 129/152 (84%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 + +++T +D LV WAR SL MTFGLACCAVEMM + PRYD++RFG RASPRQ Sbjct: 64 TSKGEYVITKLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQ 123 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 SDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSY+VVRGCDRIVPV Sbjct: 124 SDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYAVVRGCDRIVPV 183 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 DIYVPGCPPTAEAL+YG L LQKKI+R ++ Sbjct: 184 DIYVPGCPPTAEALLYGTLQLQKKIKREKKMR 215 >gi|114052144|ref|NP_001040456.1| NADH-ubiquinone oxidoreductase Fe-S protein 7 [Bombyx mori] gi|95102968|gb|ABF51425.1| NADH-ubiquinone oxidoreductase Fe-S protein 7 [Bombyx mori] Length = 210 Score = 250 bits (638), Expect = 7e-65, Method: Composition-based stats. Identities = 116/182 (63%), Positives = 133/182 (73%) Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62 T V +I +S V +D L+ W R GSL MTFGL Sbjct: 24 FTPVVSQIRDTHLPAPNPTEKRPYSPFQDASNMAEMAVARLDDLLNWGRKGSLWPMTFGL 83 Query: 63 ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122 ACCAVEMM + PRYD++R+G RASPRQSDVMIVAGTLTNKMA ALR+VYDQMP+PR+ Sbjct: 84 ACCAVEMMHIAAPRYDMDRYGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPDPRW 143 Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG+L LQKKI+R+ Sbjct: 144 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGVLQLQKKIKRMKT 203 Query: 183 VK 184 ++ Sbjct: 204 IQ 205 >gi|73987562|ref|XP_533960.2| PREDICTED: similar to NADH-ubiquinone oxidoreductase Fe-S protein 7 [Canis familiaris] Length = 216 Score = 250 bits (638), Expect = 7e-65, Method: Composition-based stats. Identities = 117/174 (67%), Positives = 138/174 (79%), Gaps = 1/174 (0%) Query: 12 SGQSSCSLEKVDADFSRISSEITHKG-FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMM 70 + ++ A + S+ + +G ++V +D L+ WAR SL MTFGLACCAVEMM Sbjct: 38 PSSTQPAVSSAGAVVPKSSALPSSRGEYVVAKLDDLINWARRSSLWPMTFGLACCAVEMM 97 Query: 71 QASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCA 130 + PRYD++RFG RASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYV+SMGSCA Sbjct: 98 HMAAPRYDMDRFGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCA 157 Query: 131 NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQ+KI+R ++ Sbjct: 158 NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQRKIKREKKLR 211 >gi|328705672|ref|XP_001949063.2| PREDICTED: probable NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial-like isoform 1 [Acyrthosiphon pisum] gi|328705674|ref|XP_003242871.1| PREDICTED: probable NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial-like isoform 2 [Acyrthosiphon pisum] gi|239788027|dbj|BAH70710.1| ACYPI008241 [Acyrthosiphon pisum] Length = 218 Score = 250 bits (638), Expect = 7e-65, Method: Composition-based stats. Identities = 109/173 (63%), Positives = 133/173 (76%) Query: 12 SGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQ 71 + Q + EK +S + V +D ++ W R SL +TFGLACCAVEMM Sbjct: 41 ASQDTNIEEKPYRPYSPFQKTNNMAEYAVARLDDVLNWGRKHSLWPLTFGLACCAVEMMH 100 Query: 72 ASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCAN 131 + PRYD++R+G RASPRQ+D++IVAGTLTNKMA ALRRVYDQMP+P++VISMGSCAN Sbjct: 101 IAAPRYDMDRYGVVFRASPRQADLIIVAGTLTNKMAPALRRVYDQMPDPKWVISMGSCAN 160 Query: 132 GGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 GGGYYHYSYSVVRGCDR++PVDIYVPGCPPTAEAL+YGIL LQKKI+R+ + Sbjct: 161 GGGYYHYSYSVVRGCDRVIPVDIYVPGCPPTAEALMYGILQLQKKIKRMSLAQ 213 >gi|260574759|ref|ZP_05842762.1| NADH-quinone oxidoreductase, B subunit [Rhodobacter sp. SW2] gi|259023176|gb|EEW26469.1| NADH-quinone oxidoreductase, B subunit [Rhodobacter sp. SW2] Length = 177 Score = 250 bits (638), Expect = 8e-65, Method: Composition-based stats. Identities = 127/169 (75%), Positives = 147/169 (86%) Query: 15 SSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASM 74 ++ + + ++ E++ KGFL+TS + ++ WARTGSL WMTFGLACCAVEM+Q SM Sbjct: 7 ANTAGPDAEVATDALNRELSDKGFLLTSTEDIINWARTGSLHWMTFGLACCAVEMIQLSM 66 Query: 75 PRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGG 134 PRYDLERFG APRASPRQSD+MIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGG Sbjct: 67 PRYDLERFGTAPRASPRQSDLMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGG 126 Query: 135 YYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 YYHYSYSVVRGCDRIVPVD+YVPGCPPTAEAL+YGIL LQ+K+RR G + Sbjct: 127 YYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALLYGILQLQRKMRRTGTI 175 >gi|225704208|gb|ACO07950.1| NADH dehydrogenase iron-sulfur protein 7, mitochondrial precursor [Oncorhynchus mykiss] Length = 218 Score = 250 bits (638), Expect = 8e-65, Method: Composition-based stats. Identities = 113/151 (74%), Positives = 128/151 (84%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93 + +++T +D LV WAR SL MTFGLACCAVEMM + PRYD++RFG RASP Q+ Sbjct: 63 SKGEYVITKLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPGQA 122 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD 153 DVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSY+VVRGCDRIVPVD Sbjct: 123 DVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYAVVRGCDRIVPVD 182 Query: 154 IYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 IYVPGCPPTAEAL+YG L LQKKI+R ++ Sbjct: 183 IYVPGCPPTAEALLYGTLQLQKKIKREKKMR 213 >gi|289207894|ref|YP_003459960.1| NADH-quinone oxidoreductase subunit beta [Thioalkalivibrio sp. K90mix] gi|288943525|gb|ADC71224.1| NADH-quinone oxidoreductase, B subunit [Thioalkalivibrio sp. K90mix] Length = 158 Score = 250 bits (638), Expect = 8e-65, Method: Composition-based stats. Identities = 117/151 (77%), Positives = 129/151 (85%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 + KGF+ TS D+L+ WARTGSL MTFGLACCAVEMM A RYDL+RFG R SPRQ Sbjct: 6 VLEKGFVTTSADKLINWARTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGIIFRPSPRQ 65 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 SDVMIVAGTL NKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSY+VVRGCDRIVPV Sbjct: 66 SDVMIVAGTLVNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYAVVRGCDRIVPV 125 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 D+YVPGCPPTAEAL+YGI+ LQ KIRR + Sbjct: 126 DVYVPGCPPTAEALLYGIIQLQNKIRRTNTI 156 >gi|260800203|ref|XP_002595024.1| hypothetical protein BRAFLDRAFT_99644 [Branchiostoma floridae] gi|229280264|gb|EEN51035.1| hypothetical protein BRAFLDRAFT_99644 [Branchiostoma floridae] Length = 194 Score = 250 bits (638), Expect = 8e-65, Method: Composition-based stats. Identities = 117/165 (70%), Positives = 133/165 (80%) Query: 19 LEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78 + D + + + + F+V +D LV WAR SL MTFGLACCAVEMM + PRYD Sbjct: 24 VPAEDTNAVTPAPKPSDAEFVVARLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPRYD 83 Query: 79 LERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY 138 ++RFG RASPRQ+DVMIVAGTLTNKMA ALR+VYDQMPEPRYV+SMGSCANGGGYYHY Sbjct: 84 MDRFGVVFRASPRQADVMIVAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGYYHY 143 Query: 139 SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 SYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQKKI+R + Sbjct: 144 SYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKIKRTKTL 188 >gi|194763060|ref|XP_001963652.1| GF19983 [Drosophila ananassae] gi|190629311|gb|EDV44728.1| GF19983 [Drosophila ananassae] Length = 217 Score = 250 bits (638), Expect = 9e-65, Method: Composition-based stats. Identities = 111/178 (62%), Positives = 139/178 (78%), Gaps = 2/178 (1%) Query: 7 NQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCA 66 N I+ S +K + F + + + + + +D L+ W R GS+ +TFGLACCA Sbjct: 37 NTLTIAKTSEEIPKKGYSPFG--NKQASAAEWSLARLDDLLNWGRKGSIWPLTFGLACCA 94 Query: 67 VEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISM 126 VEMM + PRYD++R+G RASPRQ+DV+IVAGTLTNKMA ALR+VYDQMPEPR+VISM Sbjct: 95 VEMMHIAAPRYDMDRYGVVFRASPRQADVIIVAGTLTNKMAPALRKVYDQMPEPRWVISM 154 Query: 127 GSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 GSCANGGGYYHYSYSVVRGCDRI+PVDIYVPGCPPTAEAL+YG+L LQKK++R+ ++ Sbjct: 155 GSCANGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALMYGVLQLQKKVKRMKTLQ 212 >gi|307206424|gb|EFN84462.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial [Harpegnathos saltator] Length = 224 Score = 250 bits (638), Expect = 9e-65, Method: Composition-based stats. Identities = 114/180 (63%), Positives = 135/180 (75%) Query: 5 TVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLAC 64 + + + +S + + + VD L+ W R GSL MTFGLAC Sbjct: 40 ATESSVQETKFPLPEKPKVEPYSPFQNTNNMAEYALARVDDLLNWGRKGSLWPMTFGLAC 99 Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 CAVEMM + PRYD++RFG RASPRQSD +IVAGTLTNKMASALR++YDQMPEPR+VI Sbjct: 100 CAVEMMHIAAPRYDMDRFGVVFRASPRQSDCIIVAGTLTNKMASALRKIYDQMPEPRWVI 159 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 SMGSCANGGGYYHYSYSVVRGCDRI+PVDIYVPGCPPTAEAL+YG+L LQKKI+R+ NV+ Sbjct: 160 SMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALLYGVLQLQKKIKRMQNVQ 219 >gi|195024283|ref|XP_001985843.1| GH21035 [Drosophila grimshawi] gi|193901843|gb|EDW00710.1| GH21035 [Drosophila grimshawi] Length = 226 Score = 250 bits (638), Expect = 9e-65, Method: Composition-based stats. Identities = 109/176 (61%), Positives = 135/176 (76%), Gaps = 2/176 (1%) Query: 9 KIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVE 68 ++ +K + F S + + +D L+ W R GS+ +TFGLACCAVE Sbjct: 48 PVVESSKDALPKKGYSPFGTKQSSMAEWS--LARLDDLLNWGRKGSIWPLTFGLACCAVE 105 Query: 69 MMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGS 128 MM + PRYD++R+G RASPRQ+DV+IVAGTLTNKMA ALR+VYDQMPEPR+VISMGS Sbjct: 106 MMHIAAPRYDMDRYGVVFRASPRQADVIIVAGTLTNKMAPALRKVYDQMPEPRWVISMGS 165 Query: 129 CANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 CANGGGYYHYSYSVVRGCDRI+PVDIYVPGCPPTAEAL+YG+L LQKK++R+ ++ Sbjct: 166 CANGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALLYGVLQLQKKVKRMKTLQ 221 >gi|229366862|gb|ACQ58411.1| NADH dehydrogenase iron-sulfur protein 7, mitochondrial precursor [Anoplopoma fimbria] Length = 219 Score = 249 bits (637), Expect = 1e-64, Method: Composition-based stats. Identities = 114/151 (75%), Positives = 128/151 (84%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93 + + +T +D L+ WAR SL MTFGLACCAVEMM + PRYD++RFG RASPRQ+ Sbjct: 64 SKGEYAITKLDDLINWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQA 123 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD 153 DVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD Sbjct: 124 DVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD 183 Query: 154 IYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 IYVPGCPPTAEAL+YG L LQKKI+R ++ Sbjct: 184 IYVPGCPPTAEALLYGTLQLQKKIKREKKLR 214 >gi|18859983|ref|NP_573097.1| CG9172, isoform A [Drosophila melanogaster] gi|24642371|ref|NP_727921.1| CG9172, isoform B [Drosophila melanogaster] gi|7293168|gb|AAF48552.1| CG9172, isoform A [Drosophila melanogaster] gi|16769444|gb|AAL28941.1| LD31474p [Drosophila melanogaster] gi|22832322|gb|AAN09378.1| CG9172, isoform B [Drosophila melanogaster] gi|220944268|gb|ACL84677.1| CG9172-PA [synthetic construct] gi|220954204|gb|ACL89645.1| CG9172-PA [synthetic construct] Length = 221 Score = 249 bits (637), Expect = 1e-64, Method: Composition-based stats. Identities = 110/189 (58%), Positives = 143/189 (75%), Gaps = 6/189 (3%) Query: 2 GLTTVNQKIISGQSSCSLEKVDADFSRI------SSEITHKGFLVTSVDQLVTWARTGSL 55 L +N ++ Q + + +V + + + + + + + +D L+ W R GS+ Sbjct: 28 ALPALNLALVRQQQTLPVAEVAQNLPKKGYSPFGTKQSSVAEWSLARLDDLLNWGRKGSI 87 Query: 56 MWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYD 115 +TFGLACCAVEMM + PRYD++R+G RASPRQ+DV+IVAGTLTNKMA ALR+VYD Sbjct: 88 WPLTFGLACCAVEMMHIAAPRYDMDRYGVVFRASPRQADVIIVAGTLTNKMAPALRKVYD 147 Query: 116 QMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175 QMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRI+PVDIYVPGCPPTAEAL+YG+L LQK Sbjct: 148 QMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALMYGVLQLQK 207 Query: 176 KIRRVGNVK 184 K++R+ ++ Sbjct: 208 KVKRMKTLQ 216 >gi|307293269|ref|ZP_07573115.1| NADH-quinone oxidoreductase, B subunit [Sphingobium chlorophenolicum L-1] gi|306881335|gb|EFN12551.1| NADH-quinone oxidoreductase, B subunit [Sphingobium chlorophenolicum L-1] Length = 184 Score = 249 bits (636), Expect = 1e-64, Method: Composition-based stats. Identities = 128/184 (69%), Positives = 150/184 (81%), Gaps = 1/184 (0%) Query: 1 MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTF 60 MG+ + + + F+ ++SE++ KGFLVTS ++L WARTGSL WMTF Sbjct: 1 MGV-ELERPAPGTLLPAGTQPDQDFFNALNSEVSDKGFLVTSTEELFQWARTGSLWWMTF 59 Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 GLACCAVEM+ +MPRYD+ERFG APRASPRQSDVMIVAGTL NKMA ALR+VYDQM P Sbjct: 60 GLACCAVEMIHVNMPRYDMERFGAAPRASPRQSDVMIVAGTLCNKMAPALRKVYDQMSNP 119 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 +YVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG++ LQ+KIRR+ Sbjct: 120 KYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGVMQLQRKIRRI 179 Query: 181 GNVK 184 G V+ Sbjct: 180 GTVE 183 >gi|288942133|ref|YP_003444373.1| NADH-quinone oxidoreductase subunit B [Allochromatium vinosum DSM 180] gi|288897505|gb|ADC63341.1| NADH-quinone oxidoreductase, B subunit [Allochromatium vinosum DSM 180] Length = 158 Score = 249 bits (636), Expect = 1e-64, Method: Composition-based stats. Identities = 114/151 (75%), Positives = 128/151 (84%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 + +G + T+ D+L+ WARTGSL MTFGLACCA+EMM A RYDL+RFG R SPRQ Sbjct: 6 LLEEGVVTTTADKLINWARTGSLWPMTFGLACCAIEMMHAGAARYDLDRFGIIFRPSPRQ 65 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 SDVMIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPV Sbjct: 66 SDVMIVAGTLVNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPV 125 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 D+YVPGCPPTAEAL+YGIL LQ+KIRR + Sbjct: 126 DVYVPGCPPTAEALLYGILQLQEKIRRTNTI 156 >gi|307168025|gb|EFN61349.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial [Camponotus floridanus] Length = 222 Score = 249 bits (636), Expect = 1e-64, Method: Composition-based stats. Identities = 116/189 (61%), Positives = 140/189 (74%), Gaps = 6/189 (3%) Query: 2 GLTTVNQKIISGQSSCSLEKVDADFSRISSEITH------KGFLVTSVDQLVTWARTGSL 55 +T + K ++ +SS K + + + VD L+ W R GS+ Sbjct: 29 AITKIQSKDMATESSVQKAKPPLPEKAKVEPYSPFRPNNMAEYALARVDDLLNWGRKGSI 88 Query: 56 MWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYD 115 MTFGLACCAVEMM + PRYD++RFG RASPRQSDV+IVAGTLTNKMA ALR++YD Sbjct: 89 WPMTFGLACCAVEMMHIAAPRYDMDRFGVVFRASPRQSDVIIVAGTLTNKMAPALRKIYD 148 Query: 116 QMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175 QMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRI+PVDIYVPGCPPTAEAL+YGIL LQK Sbjct: 149 QMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALLYGILQLQK 208 Query: 176 KIRRVGNVK 184 KI+R+ +++ Sbjct: 209 KIKRMQSIQ 217 >gi|332375552|gb|AEE62917.1| unknown [Dendroctonus ponderosae] Length = 227 Score = 249 bits (636), Expect = 1e-64, Method: Composition-based stats. Identities = 112/184 (60%), Positives = 137/184 (74%), Gaps = 3/184 (1%) Query: 4 TTVNQKIISGQSSCSLE---KVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTF 60 T V + ++ S E + +S + + + +D L+ W R GS+ +TF Sbjct: 39 TQVRDQSTQPATASSTEVAAQKRKPYSPFQNTNNVAEYALARLDDLLNWGRKGSVWPLTF 98 Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 GLACCAVEMM + PRYD++R+G RASPRQ+D +IVAGTLTNKMA ALR+VYDQMPEP Sbjct: 99 GLACCAVEMMHIAAPRYDMDRYGVVFRASPRQADCIIVAGTLTNKMAPALRKVYDQMPEP 158 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 R+VISMGSCANGGGYYHYSYSVVRGCDRI+PVDIYVPGCPPTAEAL+YG+L LQKKI+R Sbjct: 159 RWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALMYGVLQLQKKIKRY 218 Query: 181 GNVK 184 V+ Sbjct: 219 NTVQ 222 >gi|256821516|ref|YP_003145479.1| NADH-quinone oxidoreductase subunit B [Kangiella koreensis DSM 16069] gi|256795055|gb|ACV25711.1| NADH-quinone oxidoreductase, B subunit [Kangiella koreensis DSM 16069] Length = 186 Score = 249 bits (635), Expect = 2e-64, Method: Composition-based stats. Identities = 114/155 (73%), Positives = 129/155 (83%) Query: 29 ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88 + ++ GF+ TS+ L WARTGS+ +TFGLACCA+EMM A RYD++RFG R Sbjct: 3 LEQQLQGDGFVTTSIKDLFDWARTGSMWPVTFGLACCAIEMMHAGAARYDMDRFGVIFRP 62 Query: 89 SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 148 SPRQSDVMIVAGTLTNKMA ALRRVYDQMPEP++VISMGSCANGGGYYHYSYSVVRGCDR Sbjct: 63 SPRQSDVMIVAGTLTNKMAPALRRVYDQMPEPKWVISMGSCANGGGYYHYSYSVVRGCDR 122 Query: 149 IVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 IVPVDIYVPGCPPTAEAL+YGI+ LQ KIRR + Sbjct: 123 IVPVDIYVPGCPPTAEALLYGIIQLQNKIRRQKVI 157 >gi|195385751|ref|XP_002051568.1| GJ16291 [Drosophila virilis] gi|194148025|gb|EDW63723.1| GJ16291 [Drosophila virilis] Length = 209 Score = 249 bits (635), Expect = 2e-64, Method: Composition-based stats. Identities = 115/172 (66%), Positives = 136/172 (79%), Gaps = 2/172 (1%) Query: 13 GQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQA 72 + +K + F R ++ + VT +D L+ W R GSL MTFGLACCAVEMM Sbjct: 35 DKHGMPPKKGYSPFGR--QQVGWAEWSVTRLDDLLNWGRKGSLWPMTFGLACCAVEMMHI 92 Query: 73 SMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANG 132 + PRYD++RFG RASPRQ+DV+IVAGTLTNKMA ALR++YDQMPEPR+VISMGSCANG Sbjct: 93 AAPRYDMDRFGVVFRASPRQTDVIIVAGTLTNKMAPALRKIYDQMPEPRWVISMGSCANG 152 Query: 133 GGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 GGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+Y IL LQKKI+R+ ++ Sbjct: 153 GGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYAILQLQKKIKRMRTLQ 204 >gi|224007275|ref|XP_002292597.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|220971459|gb|EED89793.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 216 Score = 249 bits (635), Expect = 2e-64, Method: Composition-based stats. Identities = 119/177 (67%), Positives = 138/177 (77%), Gaps = 5/177 (2%) Query: 12 SGQSSCSLEKVDADFSRISSE-----ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCA 66 + ++ SL ++D ++ + V+ VD LV WAR GSL MTFGLACCA Sbjct: 34 ASSTTSSLTRLDGVDELLTGTGGVPTSNKVEYAVSRVDDLVNWARKGSLWPMTFGLACCA 93 Query: 67 VEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISM 126 VEMM A+ RYD+ERFG RASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPR+V+SM Sbjct: 94 VEMMHAAASRYDMERFGMVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRWVVSM 153 Query: 127 GSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 GSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG+L LQKKI+ ++ Sbjct: 154 GSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGLLQLQKKIKGNKSL 210 >gi|195357046|ref|XP_002044925.1| GM11675 [Drosophila sechellia] gi|194124267|gb|EDW46310.1| GM11675 [Drosophila sechellia] Length = 221 Score = 249 bits (635), Expect = 2e-64, Method: Composition-based stats. Identities = 110/189 (58%), Positives = 143/189 (75%), Gaps = 6/189 (3%) Query: 2 GLTTVNQKIISGQSSCSLEKVDADFSRI------SSEITHKGFLVTSVDQLVTWARTGSL 55 L +N ++ Q + + +V + + + + + + + +D L+ W R GS+ Sbjct: 28 ALPALNMVLVRQQQTLPVAEVAQNLPKKGYSPFGTKQSSVAEWSLARLDDLLNWGRKGSI 87 Query: 56 MWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYD 115 +TFGLACCAVEMM + PRYD++R+G RASPRQ+DV+IVAGTLTNKMA ALR+VYD Sbjct: 88 WPLTFGLACCAVEMMHIAAPRYDMDRYGVVFRASPRQADVIIVAGTLTNKMAPALRKVYD 147 Query: 116 QMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175 QMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRI+PVDIYVPGCPPTAEAL+YG+L LQK Sbjct: 148 QMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALMYGVLQLQK 207 Query: 176 KIRRVGNVK 184 K++R+ ++ Sbjct: 208 KVKRMKTLQ 216 >gi|294011308|ref|YP_003544768.1| NADH dehydrogenase I chain B [Sphingobium japonicum UT26S] gi|292674638|dbj|BAI96156.1| NADH dehydrogenase I chain B [Sphingobium japonicum UT26S] Length = 184 Score = 249 bits (635), Expect = 2e-64, Method: Composition-based stats. Identities = 128/184 (69%), Positives = 149/184 (80%), Gaps = 1/184 (0%) Query: 1 MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTF 60 MG+ + + + F ++SE++ KGFLVTS ++L WARTGSL WMTF Sbjct: 1 MGV-ELERPAPGTLLPAGTQPDQHFFDALNSEVSDKGFLVTSTEELFQWARTGSLWWMTF 59 Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 GLACCAVEM+ +MPRYD+ERFG APRASPRQSDVMIVAGTL NKMA ALR+VYDQM P Sbjct: 60 GLACCAVEMIHVNMPRYDMERFGAAPRASPRQSDVMIVAGTLCNKMAPALRKVYDQMSNP 119 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 +YVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG++ LQ+KIRR+ Sbjct: 120 KYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGVMQLQRKIRRI 179 Query: 181 GNVK 184 G V+ Sbjct: 180 GTVE 183 >gi|114707368|ref|ZP_01440265.1| NADH-ubiquinone oxidoreductase chain B protein [Fulvimarina pelagi HTCC2506] gi|114537249|gb|EAU40376.1| NADH-ubiquinone oxidoreductase chain B protein [Fulvimarina pelagi HTCC2506] Length = 194 Score = 248 bits (634), Expect = 2e-64, Method: Composition-based stats. Identities = 137/193 (70%), Positives = 155/193 (80%), Gaps = 9/193 (4%) Query: 1 MGLTT-VNQKIISGQ--------SSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWAR 51 MG+ N+ +++ Q D + I+ E+ KGFLVTS D L+ WAR Sbjct: 1 MGVIHGTNKPLLAPQTDVASVGAPGSVTAAPDPFVTAINDELADKGFLVTSTDDLIQWAR 60 Query: 52 TGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALR 111 GSLMWMTFGLACCAVEMMQ SMPRYD ERFGFAPRASPRQSDVMIVAGTLTNKMA ALR Sbjct: 61 NGSLMWMTFGLACCAVEMMQMSMPRYDAERFGFAPRASPRQSDVMIVAGTLTNKMAPALR 120 Query: 112 RVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171 +VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR++PVDIYVPGCPP+AEAL+YG++ Sbjct: 121 KVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRVIPVDIYVPGCPPSAEALLYGVM 180 Query: 172 LLQKKIRRVGNVK 184 LLQKKIRR G ++ Sbjct: 181 LLQKKIRRTGTIE 193 >gi|51473550|ref|YP_067307.1| NADH dehydrogenase subunit B [Rickettsia typhi str. Wilmington] gi|81390150|sp|Q68X17|NUOB_RICTY RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|51459862|gb|AAU03825.1| NADH dehydrogenase (ubiquinone) subunit B [Rickettsia typhi str. Wilmington] Length = 171 Score = 248 bits (634), Expect = 2e-64, Method: Composition-based stats. Identities = 112/158 (70%), Positives = 137/158 (86%) Query: 27 SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP 86 ++S +T++GFL++ +D++++WAR SL MTFGLACCAVEMMQA+ RYD++RFG Sbjct: 10 ELLNSCLTNRGFLLSKIDEVISWARANSLWPMTFGLACCAVEMMQAAASRYDMDRFGMLF 69 Query: 87 RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGC 146 R SPRQSD+MIVAGTLTNKMA ALR+VYDQM EP++V+SMGSCANGGGYYH+SYSVVRGC Sbjct: 70 RPSPRQSDLMIVAGTLTNKMAPALRKVYDQMTEPKWVLSMGSCANGGGYYHFSYSVVRGC 129 Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 DRIVPVD+YVPGCPPTAEALIYG++ LQKKI+R K Sbjct: 130 DRIVPVDVYVPGCPPTAEALIYGLMQLQKKIKRTTGFK 167 >gi|86358166|ref|YP_470058.1| NADH dehydrogenase subunit B [Rhizobium etli CFN 42] gi|123511609|sp|Q2K755|NUOB2_RHIEC RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName: Full=NADH dehydrogenase I subunit B 2; AltName: Full=NDH-1 subunit B 2 gi|86282268|gb|ABC91331.1| NADH-ubiquinone oxidoreductase chain B protein [Rhizobium etli CFN 42] Length = 186 Score = 248 bits (634), Expect = 2e-64, Method: Composition-based stats. Identities = 136/183 (74%), Positives = 154/183 (84%) Query: 2 GLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFG 61 T + + Q + D I++E+ KGFLVTS D+L+TWARTGSLMWMTFG Sbjct: 3 SFTQPHSAPRNFQFPGQQRQGDPTMGTINAELADKGFLVTSTDELITWARTGSLMWMTFG 62 Query: 62 LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPR 121 LACCA+EMMQ SMPRYD+ERFG APRASPRQSD+MIVAGTL NKMA ALR+VYDQMPEPR Sbjct: 63 LACCAIEMMQMSMPRYDIERFGVAPRASPRQSDLMIVAGTLCNKMAPALRKVYDQMPEPR 122 Query: 122 YVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181 YVISMGSCANGGGYYHYSYSVVRGCDR+VPVDIYVPGCPPTAEAL+YGILLLQ+KIRR G Sbjct: 123 YVISMGSCANGGGYYHYSYSVVRGCDRVVPVDIYVPGCPPTAEALLYGILLLQRKIRRNG 182 Query: 182 NVK 184 +++ Sbjct: 183 SIE 185 >gi|153875120|ref|ZP_02003055.1| NADH-quinone oxidoreductase, B subunit [Beggiatoa sp. PS] gi|152068417|gb|EDN66946.1| NADH-quinone oxidoreductase, B subunit [Beggiatoa sp. PS] Length = 160 Score = 248 bits (634), Expect = 2e-64, Method: Composition-based stats. Identities = 117/151 (77%), Positives = 130/151 (86%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 I +GF+ T+ D+L+ WARTGS+ MTFGLACCAVEMMQA RYDL+RFG R SPRQ Sbjct: 6 ILQEGFVTTTADRLINWARTGSMWPMTFGLACCAVEMMQAGASRYDLDRFGIVFRPSPRQ 65 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 SDVMIVAGTLTNKMA ALR+VYDQMP PR+VISMGSCANGGGYYHYSYSVVRGCDRIVPV Sbjct: 66 SDVMIVAGTLTNKMAPALRKVYDQMPNPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPV 125 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 DIY+PGCPPTAEAL+YGIL LQ KI+R + Sbjct: 126 DIYIPGCPPTAEALLYGILQLQNKIKRTNTI 156 >gi|195567032|ref|XP_002107079.1| GD15767 [Drosophila simulans] gi|194204476|gb|EDX18052.1| GD15767 [Drosophila simulans] Length = 221 Score = 248 bits (634), Expect = 2e-64, Method: Composition-based stats. Identities = 110/189 (58%), Positives = 143/189 (75%), Gaps = 6/189 (3%) Query: 2 GLTTVNQKIISGQSSCSLEKVDADFSRI------SSEITHKGFLVTSVDQLVTWARTGSL 55 L +N ++ Q + + +V + + + + + + + +D L+ W R GS+ Sbjct: 28 ALPALNMVLVRQQQTLPVAEVAQNLPKKGYSPFGTKQSSVAEWSLARLDDLLNWGRKGSI 87 Query: 56 MWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYD 115 +TFGLACCAVEMM + PRYD++R+G RASPRQ+DV+IVAGTLTNKMA ALR+VYD Sbjct: 88 WPLTFGLACCAVEMMHIAAPRYDMDRYGVVFRASPRQADVIIVAGTLTNKMAPALRKVYD 147 Query: 116 QMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175 QMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRI+PVDIYVPGCPPTAEAL+YG+L LQK Sbjct: 148 QMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALMYGVLQLQK 207 Query: 176 KIRRVGNVK 184 K++R+ ++ Sbjct: 208 KVKRMKTLQ 216 >gi|167536644|ref|XP_001749993.1| hypothetical protein [Monosiga brevicollis MX1] gi|163771503|gb|EDQ85168.1| predicted protein [Monosiga brevicollis MX1] Length = 218 Score = 248 bits (634), Expect = 2e-64, Method: Composition-based stats. Identities = 120/186 (64%), Positives = 145/186 (77%), Gaps = 4/186 (2%) Query: 3 LTTVNQKIISGQSSCSLEKVDADF---SRISSEITHKG-FLVTSVDQLVTWARTGSLMWM 58 L + Q Q++ S V A S+I + I ++ + + +D LV WAR GS+ M Sbjct: 28 LPALAQLRSVAQTTPSSAAVPAPVFGKSKIPANIDNRADYALAKLDDLVNWARKGSMWPM 87 Query: 59 TFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMP 118 TFGLACCAVEMM + PRYD++RFG RASPRQSDVMIVAGTLTNKMA ALR+VYDQMP Sbjct: 88 TFGLACCAVEMMHVAAPRYDMDRFGIVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMP 147 Query: 119 EPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 EPR+V+SMGSCANGGGYYHYSY+VVRGCDRIVPVDIYVPGCPPT+EAL+YG+L LQKKI+ Sbjct: 148 EPRWVVSMGSCANGGGYYHYSYAVVRGCDRIVPVDIYVPGCPPTSEALLYGLLQLQKKIK 207 Query: 179 RVGNVK 184 R +++ Sbjct: 208 RDRSLQ 213 >gi|115400845|ref|XP_001216011.1| NADH-ubiquinone oxidoreductase 19.3 kDa subunit, mitochondrial precursor [Aspergillus terreus NIH2624] gi|114191677|gb|EAU33377.1| NADH-ubiquinone oxidoreductase 19.3 kDa subunit, mitochondrial precursor [Aspergillus terreus NIH2624] Length = 307 Score = 248 bits (634), Expect = 2e-64, Method: Composition-based stats. Identities = 117/183 (63%), Positives = 139/183 (75%), Gaps = 2/183 (1%) Query: 4 TTVNQKIISGQSSCSLEKVDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFG 61 T + ++ +GQS + KV + S E +++T++DQ+ WAR SL MTFG Sbjct: 120 TALERQGQTGQSLTASGKVRKEVPLASQEKKEGAMQYVLTTLDQVANWARQSSLWPMTFG 179 Query: 62 LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPR 121 LACCAVEMM S PRYD +R G RASPRQSDVMIVAGTLTNKMA ALR+VYDQMP+PR Sbjct: 180 LACCAVEMMHLSTPRYDQDRLGIIFRASPRQSDVMIVAGTLTNKMAPALRQVYDQMPDPR 239 Query: 122 YVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181 +V+SMGSCANGGGYYHYSYSVVRGCDRIVPVD+YVPGCPPT+EAL+YGI LQKK+R Sbjct: 240 WVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTSEALMYGIFQLQKKMRHTR 299 Query: 182 NVK 184 + Sbjct: 300 ITR 302 >gi|269469169|gb|EEZ80711.1| NADH dehydrogenase I chain B [uncultured SUP05 cluster bacterium] Length = 159 Score = 248 bits (634), Expect = 3e-64, Method: Composition-based stats. Identities = 114/151 (75%), Positives = 131/151 (86%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 + + F+ TS+D+++ WARTGSL MTFGLACCAVEMM+A RYDL+RFG R +PRQ Sbjct: 6 LMKESFVTTSLDKVINWARTGSLWPMTFGLACCAVEMMEAGSSRYDLDRFGIVFRPTPRQ 65 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 SD+MIVAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSY+VVRGCDRIVPV Sbjct: 66 SDLMIVAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYAVVRGCDRIVPV 125 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 D+YVPGCPPTAEAL+YGIL LQ KIRR + Sbjct: 126 DVYVPGCPPTAEALLYGILQLQDKIRRTNTI 156 >gi|218463554|ref|ZP_03503645.1| NADH dehydrogenase subunit B [Rhizobium etli Kim 5] Length = 186 Score = 248 bits (634), Expect = 3e-64, Method: Composition-based stats. Identities = 137/183 (74%), Positives = 154/183 (84%) Query: 2 GLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFG 61 LT + + Q + D I++E+ KGFLVTS D+L+TWARTGSLMWMTFG Sbjct: 3 PLTQPHSAPANFQFPGEQRQGDPMMGTINAELADKGFLVTSTDELITWARTGSLMWMTFG 62 Query: 62 LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPR 121 LACCA+EMMQ SMPRYD+ERFG APR SPRQSD+MIVAGTL NKMA ALR+VYDQMPEPR Sbjct: 63 LACCAIEMMQMSMPRYDIERFGVAPRGSPRQSDLMIVAGTLCNKMAPALRKVYDQMPEPR 122 Query: 122 YVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181 YVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGILLLQ+KIRR G Sbjct: 123 YVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILLLQRKIRRNG 182 Query: 182 NVK 184 +++ Sbjct: 183 SIE 185 >gi|94496481|ref|ZP_01303058.1| NuoB, NADH dehydrogenase I, B subunit [Sphingomonas sp. SKA58] gi|94424227|gb|EAT09251.1| NuoB, NADH dehydrogenase I, B subunit [Sphingomonas sp. SKA58] Length = 172 Score = 248 bits (634), Expect = 3e-64, Method: Composition-based stats. Identities = 124/170 (72%), Positives = 144/170 (84%) Query: 15 SSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASM 74 + F+ ++ E++ KGFLVTS ++L WARTGSL WMTFGLACCAVEM+ +M Sbjct: 2 PPVGTQPDQDFFNALNGEVSDKGFLVTSTEELFQWARTGSLWWMTFGLACCAVEMIHVNM 61 Query: 75 PRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGG 134 PRYD+ERFG APRASPRQSDVMIVAGTL NKMA ALR+VYDQM P+YVISMGSCANGGG Sbjct: 62 PRYDMERFGAAPRASPRQSDVMIVAGTLCNKMAPALRKVYDQMSNPKYVISMGSCANGGG 121 Query: 135 YYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 YYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG++ LQ+KIRR+G ++ Sbjct: 122 YYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGVMQLQRKIRRIGTIE 171 >gi|212528728|ref|XP_002144521.1| NADH-ubiquinone oxidoreductase subunit B, putative [Penicillium marneffei ATCC 18224] gi|210073919|gb|EEA28006.1| NADH-ubiquinone oxidoreductase subunit B, putative [Penicillium marneffei ATCC 18224] Length = 225 Score = 248 bits (633), Expect = 3e-64, Method: Composition-based stats. Identities = 119/186 (63%), Positives = 139/186 (74%), Gaps = 2/186 (1%) Query: 1 MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWM 58 M +T + +++ S S + KV + S E + +T++DQ+ WAR SL M Sbjct: 35 MPVTAIERQLESSSSLTASGKVRREVPLPSQEKKEGAMQYALTTLDQIANWARQSSLWPM 94 Query: 59 TFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMP 118 TFGLACCAVEMM S PRYD +R G RASPRQSDVMIVAGTLTNKMA ALR+VYDQMP Sbjct: 95 TFGLACCAVEMMHLSTPRYDQDRLGIIFRASPRQSDVMIVAGTLTNKMAPALRQVYDQMP 154 Query: 119 EPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 +PR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT+EAL+YGI LQKK+R Sbjct: 155 DPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTSEALMYGIFQLQKKMR 214 Query: 179 RVGNVK 184 + Sbjct: 215 HTKITR 220 >gi|220934163|ref|YP_002513062.1| NADH-quinone oxidoreductase, B subunit [Thioalkalivibrio sp. HL-EbGR7] gi|238065221|sp|B8GNY6|NUOB_THISH RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|219995473|gb|ACL72075.1| NADH-quinone oxidoreductase, B subunit [Thioalkalivibrio sp. HL-EbGR7] Length = 158 Score = 248 bits (633), Expect = 3e-64, Method: Composition-based stats. Identities = 118/151 (78%), Positives = 128/151 (84%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 + KGF+ TS D+L+ WARTGSL MTFGLACCAVEMM A RYDL+RFG R SPRQ Sbjct: 6 VLEKGFVTTSADKLINWARTGSLWPMTFGLACCAVEMMHAGASRYDLDRFGVVFRPSPRQ 65 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 SDVMIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSY+VVRGCDRIVPV Sbjct: 66 SDVMIVAGTLVNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYAVVRGCDRIVPV 125 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 DIYVPGCPPTAEAL+YGIL LQ KIRR + Sbjct: 126 DIYVPGCPPTAEALLYGILQLQNKIRRTNTI 156 >gi|194595689|gb|ACF77132.1| NADH dehydrogenase subunit B [Azospirillum brasilense] Length = 180 Score = 248 bits (633), Expect = 3e-64, Method: Composition-based stats. Identities = 125/183 (68%), Positives = 138/183 (75%), Gaps = 5/183 (2%) Query: 1 MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTF 60 MG+ I DA ++ EI KGF+ + ++ WARTGSL MTF Sbjct: 1 MGVEAAKLAPIPPGPEQ-----DAYLRAVTEEIQEKGFITAKYEDVLAWARTGSLWPMTF 55 Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 GLACCAVEM+ A M RYDL+RFG PR SPRQSD MIVAGTLTNKMA ALR+VYDQMPEP Sbjct: 56 GLACCAVEMIHAYMSRYDLDRFGVIPRPSPRQSDCMIVAGTLTNKMAPALRKVYDQMPEP 115 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 R+VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQKKIRR Sbjct: 116 RWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALVYGILQLQKKIRRG 175 Query: 181 GNV 183 + Sbjct: 176 NRI 178 >gi|114569906|ref|YP_756586.1| NADH dehydrogenase subunit B [Maricaulis maris MCS10] gi|122316124|sp|Q0APY9|NUOB_MARMM RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|114340368|gb|ABI65648.1| NADH dehydrogenase subunit B [Maricaulis maris MCS10] Length = 188 Score = 248 bits (633), Expect = 3e-64, Method: Composition-based stats. Identities = 139/170 (81%), Positives = 150/170 (88%) Query: 15 SSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASM 74 +K D F +S + KGF+V + D LVTWARTGSLMWMTFGLACCAVEMMQASM Sbjct: 18 PGYDPKKHDPFFDGVSDALADKGFVVAAADDLVTWARTGSLMWMTFGLACCAVEMMQASM 77 Query: 75 PRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGG 134 PRYD+ERFGFAPRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGG Sbjct: 78 PRYDVERFGFAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGG 137 Query: 135 YYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 YYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQKKIRR G+++ Sbjct: 138 YYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALVYGILQLQKKIRREGSIE 187 >gi|83592891|ref|YP_426643.1| NADH dehydrogenase subunit B [Rhodospirillum rubrum ATCC 11170] gi|123526697|sp|Q2RU39|NUOB_RHORT RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|83575805|gb|ABC22356.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit [Rhodospirillum rubrum ATCC 11170] Length = 185 Score = 248 bits (633), Expect = 3e-64, Method: Composition-based stats. Identities = 122/183 (66%), Positives = 142/183 (77%) Query: 1 MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTF 60 MG++T G D +++ EI KGF++++VD LV WAR GSL MTF Sbjct: 1 MGVSTPVIVPRGGAPVPPGPDQDLILGQVAREIEEKGFVLSNVDSLVNWARAGSLWPMTF 60 Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 GLACCA+EM+ + RYDL+RFG R SPRQSDVMIVAGTLTNKMA ALR+VYDQM EP Sbjct: 61 GLACCALEMIHCACARYDLDRFGTVFRPSPRQSDVMIVAGTLTNKMAPALRKVYDQMAEP 120 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 R+VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT+EAL+YG+L LQKKI+R Sbjct: 121 RWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTSEALLYGVLQLQKKIKRT 180 Query: 181 GNV 183 G + Sbjct: 181 GAL 183 >gi|241518517|ref|YP_002979145.1| NADH-quinone oxidoreductase, B subunit [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240862930|gb|ACS60594.1| NADH-quinone oxidoreductase, B subunit [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 185 Score = 248 bits (633), Expect = 3e-64, Method: Composition-based stats. Identities = 136/184 (73%), Positives = 153/184 (83%) Query: 1 MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTF 60 M + + ++ Q D I++E+ KGFLVTS D+L+TWARTGSLMWMTF Sbjct: 1 MSQSDHPRSPMNFQYPGEQTGGDPTMGMINAELADKGFLVTSTDELITWARTGSLMWMTF 60 Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 GLACCA+EMMQ SMPRYD+ERFG APR SPRQSD+MIVAGTL NKMA ALR+VYDQMPEP Sbjct: 61 GLACCAIEMMQMSMPRYDVERFGVAPRGSPRQSDLMIVAGTLCNKMAPALRKVYDQMPEP 120 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 RYVISMGSCANGGGYYHYSYSVVRGCDR+VPVDIYVPGCPPTAEAL+YGILLLQKKIRR Sbjct: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRVVPVDIYVPGCPPTAEALLYGILLLQKKIRRN 180 Query: 181 GNVK 184 G ++ Sbjct: 181 GTIE 184 >gi|195117025|ref|XP_002003051.1| GI24498 [Drosophila mojavensis] gi|193913626|gb|EDW12493.1| GI24498 [Drosophila mojavensis] Length = 205 Score = 248 bits (633), Expect = 3e-64, Method: Composition-based stats. Identities = 113/178 (63%), Positives = 135/178 (75%) Query: 7 NQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCA 66 QK + C + + + VT +D L+ W R GS+ MTFGLACCA Sbjct: 23 KQKTMHNVDKCGMPARKGYSPFGRKQPRWGEWAVTRLDDLLNWGRKGSVWPMTFGLACCA 82 Query: 67 VEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISM 126 VEMM + PRYD++RFG RASPRQ+D++IVAGTLTNKMA ALR++YDQMPEPR+VISM Sbjct: 83 VEMMHIAGPRYDMDRFGVVFRASPRQTDLIIVAGTLTNKMAPALRKIYDQMPEPRWVISM 142 Query: 127 GSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 GSCANGGGYYHYSYSVVRGCDRI+PVDIYVPGCPPTAEAL+YGIL LQKKI+R+ ++ Sbjct: 143 GSCANGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALLYGILQLQKKIKRMRTLQ 200 >gi|91088057|ref|XP_967271.1| PREDICTED: similar to CG9172 CG9172-PA [Tribolium castaneum] gi|270012769|gb|EFA09217.1| hypothetical protein TcasGA2_TC006185 [Tribolium castaneum] Length = 202 Score = 248 bits (633), Expect = 3e-64, Method: Composition-based stats. Identities = 107/175 (61%), Positives = 131/175 (74%) Query: 10 IISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEM 69 + S E +S + + +D L+ W R S+ +TFGLACCAVEM Sbjct: 23 FAQPVRNQSTEVAPRPYSPFQKTSNLAEYSLARLDDLLNWGRKSSMWPLTFGLACCAVEM 82 Query: 70 MQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSC 129 M + PRYD++R+G RASPRQ+DV+I+AGTLTNKMA ALR+VYDQMPEPR+VISMGSC Sbjct: 83 MHIAAPRYDMDRYGVVFRASPRQADVIIIAGTLTNKMAPALRKVYDQMPEPRWVISMGSC 142 Query: 130 ANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 ANGGGYYHYSYSVVRGCDRI+PVDIYVPGCPPTAEAL+YG+L LQKK++R ++ Sbjct: 143 ANGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALLYGVLQLQKKVKRYNALQ 197 >gi|195033324|ref|XP_001988662.1| GH11286 [Drosophila grimshawi] gi|193904662|gb|EDW03529.1| GH11286 [Drosophila grimshawi] Length = 209 Score = 248 bits (633), Expect = 3e-64, Method: Composition-based stats. Identities = 115/178 (64%), Positives = 136/178 (76%) Query: 7 NQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCA 66 QK + + +++ + VT +D L+ W R GS+ MTFGLACCA Sbjct: 27 QQKTMHDVDKHGVPSRKGYSPFGRNQLGWGEWTVTRLDDLLNWGRKGSIWPMTFGLACCA 86 Query: 67 VEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISM 126 VEMM + PRYD++RFG RASPRQ+D+MIVAGTLTNKMA ALR+VYDQMPEPR+VISM Sbjct: 87 VEMMHIAAPRYDMDRFGVVFRASPRQTDLMIVAGTLTNKMAPALRKVYDQMPEPRWVISM 146 Query: 127 GSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 GSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQKKI+R+ ++ Sbjct: 147 GSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALMYGILQLQKKIKRMRTLQ 204 >gi|170069760|ref|XP_001869339.1| NADH dehydrogenase iron-sulfur protein 7, mitochondrial [Culex quinquefasciatus] gi|167865642|gb|EDS29025.1| NADH dehydrogenase iron-sulfur protein 7, mitochondrial [Culex quinquefasciatus] Length = 212 Score = 248 bits (633), Expect = 3e-64, Method: Composition-based stats. Identities = 108/145 (74%), Positives = 127/145 (87%) Query: 40 VTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVA 99 V +D ++ W R GS+ +TFGLACCAVEMM + PRYD++RFG RASPRQ+DV+IVA Sbjct: 63 VARLDDVLNWGRKGSIWPLTFGLACCAVEMMHIAAPRYDMDRFGVVFRASPRQADVIIVA 122 Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGC 159 GTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRI+PVDIYVPGC Sbjct: 123 GTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVPGC 182 Query: 160 PPTAEALIYGILLLQKKIRRVGNVK 184 PPTAEAL+YGIL LQKK++R+ ++ Sbjct: 183 PPTAEALLYGILQLQKKVKRMKTLQ 207 >gi|326433088|gb|EGD78658.1| NDUFS7 protein [Salpingoeca sp. ATCC 50818] Length = 214 Score = 248 bits (633), Expect = 3e-64, Method: Composition-based stats. Identities = 111/147 (75%), Positives = 128/147 (87%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 + + +D LV WAR S+ MTFGLACCAVEMM + PRYD++RFG RASPRQSDVMI Sbjct: 63 YALAKLDDLVNWARKSSMWPMTFGLACCAVEMMHVAAPRYDMDRFGIVFRASPRQSDVMI 122 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGTLTNKMA ALR+VYDQMPEPR+V+SMGSCANGGGYYHYSY+VVRGCDRIVPVDIYVP Sbjct: 123 VAGTLTNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYAVVRGCDRIVPVDIYVP 182 Query: 158 GCPPTAEALIYGILLLQKKIRRVGNVK 184 GCPPTAEAL+YG+L LQKKI+R +++ Sbjct: 183 GCPPTAEALLYGLLQLQKKIKRDKSLQ 209 >gi|195479097|ref|XP_002100761.1| GE15999 [Drosophila yakuba] gi|194188285|gb|EDX01869.1| GE15999 [Drosophila yakuba] Length = 221 Score = 248 bits (633), Expect = 3e-64, Method: Composition-based stats. Identities = 109/189 (57%), Positives = 143/189 (75%), Gaps = 6/189 (3%) Query: 2 GLTTVNQKIISGQSSCSLEKVDADFSRI------SSEITHKGFLVTSVDQLVTWARTGSL 55 + +N ++ Q + + +V + + + + + + + +D L+ W R GS+ Sbjct: 28 AVPALNMVLMRQQQTLPVAEVAQNLPKKGYSPFGTKQSSVAEWSLARLDDLLNWGRKGSI 87 Query: 56 MWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYD 115 +TFGLACCAVEMM + PRYD++R+G RASPRQ+DV+IVAGTLTNKMA ALR+VYD Sbjct: 88 WPLTFGLACCAVEMMHIAAPRYDMDRYGVVFRASPRQADVIIVAGTLTNKMAPALRKVYD 147 Query: 116 QMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175 QMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRI+PVDIYVPGCPPTAEAL+YG+L LQK Sbjct: 148 QMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALMYGVLQLQK 207 Query: 176 KIRRVGNVK 184 K++R+ ++ Sbjct: 208 KVKRMKTLQ 216 >gi|320167168|gb|EFW44067.1| NADH2 dehydrogenase subunit 22K [Capsaspora owczarzaki ATCC 30864] Length = 206 Score = 248 bits (633), Expect = 3e-64, Method: Composition-based stats. Identities = 116/165 (70%), Positives = 133/165 (80%) Query: 20 EKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDL 79 + + + F + F ++ +D LV W RTGS+ MTFGLACCAVEMMQA+ RYD Sbjct: 37 KPIKSSFPASLAPANQAEFALSKLDALVNWGRTGSVWPMTFGLACCAVEMMQAAAARYDF 96 Query: 80 ERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS 139 +RFG RASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYS Sbjct: 97 DRFGIVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYS 156 Query: 140 YSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 Y+VVRGCDRIVPVD+YVPGCPPTAEAL+YGIL LQKKI+R + Sbjct: 157 YAVVRGCDRIVPVDVYVPGCPPTAEALLYGILQLQKKIKRSNQAQ 201 >gi|296420699|ref|XP_002839906.1| hypothetical protein [Tuber melanosporum Mel28] gi|295636113|emb|CAZ84097.1| unnamed protein product [Tuber melanosporum] Length = 213 Score = 248 bits (633), Expect = 3e-64, Method: Composition-based stats. Identities = 118/180 (65%), Positives = 142/180 (78%), Gaps = 3/180 (1%) Query: 8 QKIISGQSSCSLEKVDADFSRISSEITHKG---FLVTSVDQLVTWARTGSLMWMTFGLAC 64 ++ + S S+++ + + S++ KG +++TS+DQ+ WAR GSL MTFGLAC Sbjct: 29 PTSLAPRDSSSIDRSNRREVLLPSQVPKKGVMQYVLTSLDQVANWARQGSLWPMTFGLAC 88 Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 CAVEMM S PRYD +R G RASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPR+V+ Sbjct: 89 CAVEMMHLSTPRYDQDRLGIIFRASPRQSDVMIVAGTLTNKMAPALRQVYDQMPEPRWVV 148 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 SMGSCANGGGYYHYSYSVVRGCDRIVPVD+YVPGCPPT+EAL+YGIL LQKK+R + Sbjct: 149 SMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTSEALMYGILQLQKKMRNTKITR 208 >gi|294677055|ref|YP_003577670.1| NADH-quinone oxidoreductase subunit B [Rhodobacter capsulatus SB 1003] gi|6647658|sp|O84970|NUOB_RHOCA RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|3282560|gb|AAC24986.1| NUOB [Rhodobacter capsulatus] gi|294475875|gb|ADE85263.1| NADH-quinone oxidoreductase, B subunit [Rhodobacter capsulatus SB 1003] Length = 177 Score = 247 bits (632), Expect = 4e-64, Method: Composition-based stats. Identities = 124/155 (80%), Positives = 141/155 (90%) Query: 29 ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88 ++ ++ KGFL+T+ + ++ WAR GSL WMTFGLACCAVEMM +MPRYD+ER+GFAPRA Sbjct: 21 LNRDLQDKGFLLTTAEDIINWARNGSLHWMTFGLACCAVEMMHTAMPRYDVERYGFAPRA 80 Query: 89 SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 148 SPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR Sbjct: 81 SPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 140 Query: 149 IVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 IVPVDIYVPGCPP+AEAL+YGIL LQ+KIRR G + Sbjct: 141 IVPVDIYVPGCPPSAEALMYGILQLQRKIRRTGTL 175 >gi|83858414|ref|ZP_00951936.1| NADH dehydrogenase beta subunit [Oceanicaulis alexandrii HTCC2633] gi|83853237|gb|EAP91089.1| NADH dehydrogenase beta subunit [Oceanicaulis alexandrii HTCC2633] Length = 187 Score = 247 bits (632), Expect = 4e-64, Method: Composition-based stats. Identities = 135/182 (74%), Positives = 149/182 (81%) Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62 + + +K D F +S + KGFLV + D L+TWARTGSLMWMTFGL Sbjct: 5 IVPAGSAATAKTPHYDPKKHDPFFDGVSDALADKGFLVAAADDLITWARTGSLMWMTFGL 64 Query: 63 ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122 ACCAVEMMQASMPRYD+ER G APR SPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRY Sbjct: 65 ACCAVEMMQASMPRYDVERLGAAPRGSPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRY 124 Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182 VISMGSCANGGGYYHYSYSVVRGCDRIVP+DIYVPGCPPTAEAL+YGIL LQKKIRR G+ Sbjct: 125 VISMGSCANGGGYYHYSYSVVRGCDRIVPIDIYVPGCPPTAEALVYGILQLQKKIRREGS 184 Query: 183 VK 184 ++ Sbjct: 185 IE 186 >gi|290562629|gb|ADD38710.1| NADH dehydrogenase iron-sulfur protein 7, mitochondrial [Lepeophtheirus salmonis] Length = 211 Score = 247 bits (632), Expect = 4e-64, Method: Composition-based stats. Identities = 109/154 (70%), Positives = 128/154 (83%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP 90 + ++V +D L+ W R SL +TFGLACCAVEMM + PRYD++R+G RASP Sbjct: 53 DKKNKAEYVVARLDDLINWGRKTSLWPLTFGLACCAVEMMHIAAPRYDMDRYGVVFRASP 112 Query: 91 RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150 RQ+DV++VAGTLTNKMA A R+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIV Sbjct: 113 RQADVILVAGTLTNKMAPAFRKVYDQMLEPRWVISMGSCANGGGYYHYSYSVVRGCDRIV 172 Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 PVDIYVPGCPPTAEAL+YGIL LQKKI+R+ NV+ Sbjct: 173 PVDIYVPGCPPTAEALMYGILQLQKKIKRMKNVQ 206 >gi|288958988|ref|YP_003449329.1| NADH dehydrogenase I chain B [Azospirillum sp. B510] gi|288911296|dbj|BAI72785.1| NADH dehydrogenase I chain B [Azospirillum sp. B510] Length = 188 Score = 247 bits (632), Expect = 4e-64, Method: Composition-based stats. Identities = 122/167 (73%), Positives = 136/167 (81%) Query: 17 CSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPR 76 + DA +S EI KGF++ + L+ WARTGSL MTFGLACCAVEM+ A M R Sbjct: 20 PPGPEQDAYIRAVSDEIQDKGFVLAKYEDLLAWARTGSLWPMTFGLACCAVEMIHAYMSR 79 Query: 77 YDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY 136 YDL+RFG PR SPRQSD MIVAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYY Sbjct: 80 YDLDRFGVIPRPSPRQSDCMIVAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYY 139 Query: 137 HYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 HYSY+VVRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQKKI+R + Sbjct: 140 HYSYAVVRGCDRIVPVDIYVPGCPPTAEALVYGILQLQKKIKRGNRI 186 >gi|225718368|gb|ACO15030.1| NADH dehydrogenase iron-sulfur protein 7, mitochondrial precursor [Caligus clemensi] Length = 211 Score = 247 bits (632), Expect = 4e-64, Method: Composition-based stats. Identities = 110/157 (70%), Positives = 130/157 (82%) Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87 R+ + ++V +D L+ W R SL +TFGLACCAVEMM + PRYD++R+G R Sbjct: 50 RVDIKKNKAEYVVARLDDLINWGRKTSLWPLTFGLACCAVEMMHIAAPRYDMDRYGVVFR 109 Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCD 147 ASPRQ+DV++VAGTLTNKMA A R+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCD Sbjct: 110 ASPRQADVILVAGTLTNKMAPAFRKVYDQMLEPRWVISMGSCANGGGYYHYSYSVVRGCD 169 Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 RIVPVDIYVPGCPPTAEAL+YGIL LQKKI+R+ NV+ Sbjct: 170 RIVPVDIYVPGCPPTAEALMYGILQLQKKIKRMKNVQ 206 >gi|194894035|ref|XP_001977994.1| GG19352 [Drosophila erecta] gi|190649643|gb|EDV46921.1| GG19352 [Drosophila erecta] Length = 221 Score = 247 bits (632), Expect = 4e-64, Method: Composition-based stats. Identities = 109/189 (57%), Positives = 143/189 (75%), Gaps = 6/189 (3%) Query: 2 GLTTVNQKIISGQSSCSLEKVDADFSRI------SSEITHKGFLVTSVDQLVTWARTGSL 55 + +N ++ Q + + +V + + + + + + + +D L+ W R GS+ Sbjct: 28 AVPALNMVLVRQQQTLPVAEVAQNLPKKGYSPFGTKQSSVAEWSLARLDDLLNWGRKGSI 87 Query: 56 MWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYD 115 +TFGLACCAVEMM + PRYD++R+G RASPRQ+DV+IVAGTLTNKMA ALR+VYD Sbjct: 88 WPLTFGLACCAVEMMHIAAPRYDMDRYGVVFRASPRQADVIIVAGTLTNKMAPALRKVYD 147 Query: 116 QMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175 QMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRI+PVDIYVPGCPPTAEAL+YG+L LQK Sbjct: 148 QMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALMYGVLQLQK 207 Query: 176 KIRRVGNVK 184 K++R+ ++ Sbjct: 208 KVKRMKTLQ 216 >gi|312116344|ref|YP_004013940.1| NADH-quinone oxidoreductase subunit beta [Rhodomicrobium vannielii ATCC 17100] gi|311221473|gb|ADP72841.1| NADH-quinone oxidoreductase, B subunit [Rhodomicrobium vannielii ATCC 17100] Length = 184 Score = 247 bits (632), Expect = 4e-64, Method: Composition-based stats. Identities = 128/172 (74%), Positives = 147/172 (85%) Query: 13 GQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQA 72 DF +++++ KGFLVTS + ++ WARTGSLMWMTFGLACCAVEM+Q Sbjct: 12 DTPGRPGAGAAVDFDGLNAQLADKGFLVTSTEDVINWARTGSLMWMTFGLACCAVEMIQV 71 Query: 73 SMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANG 132 SMPRYDLERFG APRASPRQSD+MIVAGTL NKMA ALR+VYDQMPEPRYVISMGSCANG Sbjct: 72 SMPRYDLERFGTAPRASPRQSDLMIVAGTLCNKMAPALRKVYDQMPEPRYVISMGSCANG 131 Query: 133 GGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 GGYYHYSYSVVRGCDR+VPVD+Y+PGCPP+AEAL+YGI+LLQKKIRR G ++ Sbjct: 132 GGYYHYSYSVVRGCDRVVPVDVYIPGCPPSAEALLYGIMLLQKKIRRTGTIE 183 >gi|84000019|ref|NP_001033111.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial precursor [Bos taurus] gi|1171865|sp|P42026|NDUS7_BOVIN RecName: Full=NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial; AltName: Full=Complex I-20kD; Short=CI-20kD; AltName: Full=NADH-ubiquinone oxidoreductase 20 kDa subunit; AltName: Full=PSST subunit; Flags: Precursor gi|599691|emb|CAA46154.1| PSST subunit of the NADH: ubiquinone oxidoreductase complex [Bos taurus] gi|83638667|gb|AAI09717.1| NADH dehydrogenase (ubiquinone) Fe-S protein 7, 20kDa (NADH-coenzyme Q reductase) [Bos taurus] gi|296485358|gb|DAA27473.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial precursor [Bos taurus] Length = 216 Score = 247 bits (632), Expect = 4e-64, Method: Composition-based stats. Identities = 117/174 (67%), Positives = 139/174 (79%), Gaps = 1/174 (0%) Query: 12 SGQSSCSLEKVDADFSRISSEITHKG-FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMM 70 + ++ + A + ++ + +G ++V +D L+ WAR SL MTFGLACCAVEMM Sbjct: 38 PSSTQPAVSQARAVVPKPAALPSSRGEYVVAKLDDLINWARRSSLWPMTFGLACCAVEMM 97 Query: 71 QASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCA 130 + PRYD++RFG RASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYV+SMGSCA Sbjct: 98 HMAAPRYDMDRFGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCA 157 Query: 131 NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQKKI+R ++ Sbjct: 158 NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKIKREKRLR 211 >gi|150406467|ref|YP_001315111.1| NADH dehydrogenase subunit 10 [Chlorokybus atmophyticus] gi|126507704|gb|ABO15101.1| NADH dehydrogenase subunit 10 [Chlorokybus atmophyticus] Length = 158 Score = 247 bits (631), Expect = 5e-64, Method: Composition-based stats. Identities = 118/147 (80%), Positives = 128/147 (87%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 +L++ VDQL+ WAR GSL MTFGLACCAVEMM RYDL+RFG R SPRQSDVMI Sbjct: 7 YLISKVDQLIHWARKGSLWPMTFGLACCAVEMMHTGASRYDLDRFGIIFRPSPRQSDVMI 66 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP Sbjct: 67 VAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 126 Query: 158 GCPPTAEALIYGILLLQKKIRRVGNVK 184 GCPPTAEAL+YGIL LQKK++R N K Sbjct: 127 GCPPTAEALLYGILQLQKKMKRTKNTK 153 >gi|125772981|ref|XP_001357749.1| GA15185 [Drosophila pseudoobscura pseudoobscura] gi|54637481|gb|EAL26883.1| GA15185 [Drosophila pseudoobscura pseudoobscura] Length = 211 Score = 247 bits (631), Expect = 5e-64, Method: Composition-based stats. Identities = 114/176 (64%), Positives = 137/176 (77%), Gaps = 2/176 (1%) Query: 9 KIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVE 68 + ++ + F R ++ + + + +D L+ W R GSL MTFGLACCAVE Sbjct: 33 PVYDDVRQKPAKRGYSPFGR--NQNSWSEWTLARLDDLLNWGRKGSLWPMTFGLACCAVE 90 Query: 69 MMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGS 128 MM + PRYD++RFG RASPRQ+DVMIVAGTLTNKMA ALR+VYDQMPEPR+VISMGS Sbjct: 91 MMHIAAPRYDMDRFGMVFRASPRQTDVMIVAGTLTNKMAPALRKVYDQMPEPRWVISMGS 150 Query: 129 CANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 CANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG+L LQKK+RR+ ++ Sbjct: 151 CANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGLLQLQKKVRRMRTLQ 206 >gi|119501352|ref|XP_001267433.1| NADH-ubiquinone oxidoreductase subunit B, putative [Neosartorya fischeri NRRL 181] gi|119415598|gb|EAW25536.1| NADH-ubiquinone oxidoreductase subunit B, putative [Neosartorya fischeri NRRL 181] Length = 228 Score = 247 bits (631), Expect = 6e-64, Method: Composition-based stats. Identities = 118/183 (64%), Positives = 138/183 (75%), Gaps = 2/183 (1%) Query: 4 TTVNQKIISGQSSCSLEKVDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFG 61 T + ++ SGQ + KV + S E +++T++DQ+ WAR SL MTFG Sbjct: 41 TALERQAQSGQPLTASGKVRKEVPLPSQEKKEGAMQYVLTTLDQVANWARQSSLWPMTFG 100 Query: 62 LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPR 121 LACCAVEMM S PRYD +R G RASPRQSDVMIVAGTLTNKMA ALR+VYDQMP+PR Sbjct: 101 LACCAVEMMHLSTPRYDQDRLGIIFRASPRQSDVMIVAGTLTNKMAPALRQVYDQMPDPR 160 Query: 122 YVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181 +VISMGSCANGGGYYHYSYSVVRGCDRIVPVD+YVPGCPPT+EAL+YGI LQKK+R Sbjct: 161 WVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTSEALMYGIFQLQKKMRHTR 220 Query: 182 NVK 184 + Sbjct: 221 ITR 223 >gi|316969245|gb|EFV53373.1| NADH dehydrogenase I, B subunit [Trichinella spiralis] Length = 803 Score = 247 bits (630), Expect = 6e-64, Method: Composition-based stats. Identities = 105/178 (58%), Positives = 132/178 (74%), Gaps = 5/178 (2%) Query: 9 KIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVE 68 + + + F++++S + + D L+ WAR GSL +TFGLACCA+E Sbjct: 339 PAEADKPPRDISWTGTPFTKVNS---AAEYALARADDLINWARRGSLWPLTFGLACCAIE 395 Query: 69 MMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRV--YDQMPEPRYVISM 126 MM + PRYD++RFG RASPRQ+D MI+AGT+TNKMA ALRRV YDQMP+P++VISM Sbjct: 396 MMHFAAPRYDMDRFGIVFRASPRQADCMIIAGTVTNKMAPALRRVNIYDQMPDPKWVISM 455 Query: 127 GSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 GSCANGGGYYHYSYSVVRGCDRI+PVDIYVPGCPP+AEAL+Y L LQKKI+ + + Sbjct: 456 GSCANGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPSAEALLYAFLQLQKKIKGMTRAQ 513 >gi|261856549|ref|YP_003263832.1| NADH-quinone oxidoreductase subunit beta [Halothiobacillus neapolitanus c2] gi|261837018|gb|ACX96785.1| NADH-quinone oxidoreductase, B subunit [Halothiobacillus neapolitanus c2] Length = 159 Score = 247 bits (630), Expect = 7e-64, Method: Composition-based stats. Identities = 117/151 (77%), Positives = 128/151 (84%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 + KGF+ TS D+L+ WARTGSL MTFGLACCAVEMM A RYDL+RFG R SPRQ Sbjct: 6 VLEKGFVTTSADKLINWARTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGVVFRPSPRQ 65 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 SDVMIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSY+VVRGCDRIVPV Sbjct: 66 SDVMIVAGTLVNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYAVVRGCDRIVPV 125 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 DIYVPGCPPTAEAL+YGI+ LQ KIRR + Sbjct: 126 DIYVPGCPPTAEALLYGIIQLQNKIRRTNTI 156 >gi|159124830|gb|EDP49948.1| NADH-ubiquinone oxidoreductase subunit B, putative [Aspergillus fumigatus A1163] Length = 225 Score = 247 bits (630), Expect = 7e-64, Method: Composition-based stats. Identities = 106/172 (61%), Positives = 133/172 (77%), Gaps = 1/172 (0%) Query: 14 QSSCSLEKVDADFSRISSEITHK-GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQA 72 + + + + F++ E K ++T+ D L+ WAR GSL ++FGLACC VEMM A Sbjct: 49 KHTITNPSLPTSFNQSKEENAGKLHHILTTTDSLINWARQGSLWPLSFGLACCGVEMMAA 108 Query: 73 SMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANG 132 SMPRYD +R G RASPRQ+DVM+VAGT+TNKMA ALR++YDQMP+P++VISMGSCANG Sbjct: 109 SMPRYDQDRQGIIFRASPRQADVMLVAGTVTNKMAPALRQLYDQMPDPKWVISMGSCANG 168 Query: 133 GGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 GGYYH+SYSVVRG DR+VPVDIYVPGCPPT EAL+YGIL L++KI R + Sbjct: 169 GGYYHHSYSVVRGVDRLVPVDIYVPGCPPTPEALLYGILQLKRKIERTKVTR 220 >gi|195158809|ref|XP_002020277.1| GL13892 [Drosophila persimilis] gi|194117046|gb|EDW39089.1| GL13892 [Drosophila persimilis] Length = 205 Score = 247 bits (630), Expect = 8e-64, Method: Composition-based stats. Identities = 114/176 (64%), Positives = 137/176 (77%), Gaps = 2/176 (1%) Query: 9 KIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVE 68 + ++ + F R ++ + + + +D L+ W R GSL MTFGLACCAVE Sbjct: 27 PVYDDVRQKPAKRGYSPFGR--NQNSWSEWTLARLDDLLNWGRKGSLWPMTFGLACCAVE 84 Query: 69 MMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGS 128 MM + PRYD++RFG RASPRQ+DVMIVAGTLTNKMA ALR+VYDQMPEPR+VISMGS Sbjct: 85 MMHIAAPRYDMDRFGMVFRASPRQTDVMIVAGTLTNKMAPALRKVYDQMPEPRWVISMGS 144 Query: 129 CANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 CANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG+L LQKK+RR+ ++ Sbjct: 145 CANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGLLQLQKKVRRMRTLQ 200 >gi|321466001|gb|EFX76999.1| hypothetical protein DAPPUDRAFT_54753 [Daphnia pulex] Length = 167 Score = 246 bits (629), Expect = 8e-64, Method: Composition-based stats. Identities = 110/160 (68%), Positives = 131/160 (81%) Query: 25 DFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF 84 +S + + V +D L+ W R GSL +TFGLACCAVEMM + PRYD++R+G Sbjct: 3 PYSPFQNTNNMAEYAVARLDDLLNWGRKGSLWPLTFGLACCAVEMMHIAAPRYDMDRYGV 62 Query: 85 APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR 144 RASPRQ+DV+IVAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVR Sbjct: 63 VFRASPRQADVIIVAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVR 122 Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 GCDRI+PVDIYVPGCPPTAEAL+YGIL LQKK++R+ ++ Sbjct: 123 GCDRIIPVDIYVPGCPPTAEALMYGILQLQKKVKRMKTIQ 162 >gi|78485163|ref|YP_391088.1| NADH dehydrogenase subunit B [Thiomicrospira crunogena XCL-2] gi|123555687|sp|Q31HF9|NUOB_THICR RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|78363449|gb|ABB41414.1| NADH dehydrogenase I chain B [Thiomicrospira crunogena XCL-2] Length = 158 Score = 246 bits (629), Expect = 8e-64, Method: Composition-based stats. Identities = 114/151 (75%), Positives = 127/151 (84%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 + +G + TS D+L+ WARTGSL MTFGLACCAVEMM A RYDL+RFG R SPRQ Sbjct: 6 VLKEGVVTTSADKLINWARTGSLWPMTFGLACCAVEMMHAGASRYDLDRFGIIFRPSPRQ 65 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 SDVMIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPV Sbjct: 66 SDVMIVAGTLVNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPV 125 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 D+YVPGCPPTAEAL+YGI+ LQ KI+R + Sbjct: 126 DVYVPGCPPTAEALLYGIIQLQNKIKRTNTI 156 >gi|158455101|gb|AAI53838.1| NDUFS7 protein [Bos taurus] Length = 179 Score = 246 bits (629), Expect = 9e-64, Method: Composition-based stats. Identities = 117/173 (67%), Positives = 139/173 (80%), Gaps = 1/173 (0%) Query: 13 GQSSCSLEKVDADFSRISSEITHKG-FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQ 71 + ++ + A + ++ + +G ++V +D L+ WAR SL MTFGLACCAVEMM Sbjct: 2 PSTQPAVSQARAVVPKPAALPSSRGEYVVAKLDDLINWARRSSLWPMTFGLACCAVEMMH 61 Query: 72 ASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCAN 131 + PRYD++RFG RASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYV+SMGSCAN Sbjct: 62 MAAPRYDMDRFGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCAN 121 Query: 132 GGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 GGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQKKI+R ++ Sbjct: 122 GGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKIKREKRLR 174 >gi|255019908|ref|ZP_05291983.1| NADH-ubiquinone oxidoreductase chain B [Acidithiobacillus caldus ATCC 51756] gi|254970688|gb|EET28175.1| NADH-ubiquinone oxidoreductase chain B [Acidithiobacillus caldus ATCC 51756] Length = 158 Score = 246 bits (629), Expect = 9e-64, Method: Composition-based stats. Identities = 115/151 (76%), Positives = 130/151 (86%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 + KGF+ TS+D +V W+RTGSL MTFGLACCAVEMM A RYDL+RFG R SPRQ Sbjct: 6 VLEKGFVTTSIDTVVNWSRTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGIIFRPSPRQ 65 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 SDVMIVAGTL NKMA ALR+VYDQMPEPR+V+SMGSCANGGGYYHYSYSVVRGCDRIVPV Sbjct: 66 SDVMIVAGTLVNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIVPV 125 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 D+YVPGCPPTAEAL++G++ LQKKIRR + Sbjct: 126 DVYVPGCPPTAEALLFGLIQLQKKIRRTNTI 156 >gi|195429519|ref|XP_002062806.1| GK19502 [Drosophila willistoni] gi|194158891|gb|EDW73792.1| GK19502 [Drosophila willistoni] Length = 213 Score = 246 bits (629), Expect = 1e-63, Method: Composition-based stats. Identities = 110/145 (75%), Positives = 127/145 (87%) Query: 40 VTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVA 99 V +D L+ W R GSL MTFGLACCAVEMM + PRYD++RFG RASPRQ+DV+IVA Sbjct: 64 VARLDDLINWGRKGSLWPMTFGLACCAVEMMHIAAPRYDMDRFGVVFRASPRQTDVIIVA 123 Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGC 159 GTLTNKMA ALR++YDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRI+PVDIYVPGC Sbjct: 124 GTLTNKMAPALRKIYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVPGC 183 Query: 160 PPTAEALIYGILLLQKKIRRVGNVK 184 PPTAEAL+YGIL LQKK++R+ ++ Sbjct: 184 PPTAEALMYGILQLQKKVKRMKTLQ 208 >gi|198284345|ref|YP_002220666.1| NADH dehydrogenase subunit B [Acidithiobacillus ferrooxidans ATCC 53993] gi|218666644|ref|YP_002427007.1| NADH-quinone oxidoreductase, B subunit [Acidithiobacillus ferrooxidans ATCC 23270] gi|218527968|sp|B5EN70|NUOB2_ACIF5 RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName: Full=NADH dehydrogenase I subunit B 2; AltName: Full=NDH-1 subunit B 2 gi|198248866|gb|ACH84459.1| NADH-quinone oxidoreductase, B subunit [Acidithiobacillus ferrooxidans ATCC 53993] gi|218518857|gb|ACK79443.1| NADH-quinone oxidoreductase, B subunit [Acidithiobacillus ferrooxidans ATCC 23270] Length = 158 Score = 246 bits (628), Expect = 1e-63, Method: Composition-based stats. Identities = 114/151 (75%), Positives = 129/151 (85%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 + KGF+ T++D +V W RTGSL MTFGLACCAVEMM A RYDL+RFG R SPRQ Sbjct: 6 LLEKGFVTTTIDTVVNWGRTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGIVFRPSPRQ 65 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 SDVMIVAGTL NKMA ALR+VYDQMPEPR+V+SMGSCANGGGYYHYSYS+VRGCDRIVPV Sbjct: 66 SDVMIVAGTLVNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSIVRGCDRIVPV 125 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 DIYVPGCPPTAEAL++G++ LQKKIRR + Sbjct: 126 DIYVPGCPPTAEALLFGLVQLQKKIRRTNTI 156 >gi|70994922|ref|XP_752238.1| NADH-ubiquinone oxidoreductase subunit B [Aspergillus fumigatus Af293] gi|66849872|gb|EAL90200.1| NADH-ubiquinone oxidoreductase subunit B, putative [Aspergillus fumigatus Af293] gi|159124846|gb|EDP49963.1| NADH-ubiquinone oxidoreductase subunit B, putative [Aspergillus fumigatus A1163] Length = 223 Score = 246 bits (628), Expect = 1e-63, Method: Composition-based stats. Identities = 118/183 (64%), Positives = 137/183 (74%), Gaps = 2/183 (1%) Query: 4 TTVNQKIISGQSSCSLEKVDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFG 61 T + + SGQ + KV + S E +++T++DQ+ WAR SL MTFG Sbjct: 36 TALEHQAQSGQPLTASGKVRKEVPLPSQEKKEGAMQYVLTTLDQVANWARQSSLWPMTFG 95 Query: 62 LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPR 121 LACCAVEMM S PRYD +R G RASPRQSDVMIVAGTLTNKMA ALR+VYDQMP+PR Sbjct: 96 LACCAVEMMHLSTPRYDQDRLGIIFRASPRQSDVMIVAGTLTNKMAPALRQVYDQMPDPR 155 Query: 122 YVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181 +VISMGSCANGGGYYHYSYSVVRGCDRIVPVD+YVPGCPPT+EAL+YGI LQKK+R Sbjct: 156 WVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTSEALMYGIFQLQKKMRHTR 215 Query: 182 NVK 184 + Sbjct: 216 ITR 218 >gi|328854118|gb|EGG03252.1| hypothetical protein MELLADRAFT_78587 [Melampsora larici-populina 98AG31] Length = 258 Score = 246 bits (628), Expect = 1e-63, Method: Composition-based stats. Identities = 109/179 (60%), Positives = 135/179 (75%) Query: 4 TTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLA 63 T+ + L + ++ + + ++++++D++V W R GS+ MTFGLA Sbjct: 73 PTIASTPSPYSPAFDLARQGSNQLSLETPRNGAEYVLSTIDKIVNWGRQGSMWPMTFGLA 132 Query: 64 CCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYV 123 CCAVEMM + RYD +R G RASPRQSD+MIVAGTLTNKMA ALR+VYDQMPEPR+V Sbjct: 133 CCAVEMMHMAAARYDQDRLGVVFRASPRQSDIMIVAGTLTNKMAPALRKVYDQMPEPRWV 192 Query: 124 ISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182 ISMGSCANGGGYYHYSYSVVRGCDRIVPVD+YVPGCPPTAEAL+YG+L LQ+K+RR Sbjct: 193 ISMGSCANGGGYYHYSYSVVRGCDRIVPVDLYVPGCPPTAEALLYGMLQLQRKMRRSRK 251 >gi|304322207|ref|YP_003855850.1| NADH dehydrogenase subunit beta [Parvularcula bermudensis HTCC2503] gi|303301109|gb|ADM10708.1| NADH dehydrogenase beta subunit [Parvularcula bermudensis HTCC2503] Length = 226 Score = 246 bits (628), Expect = 1e-63, Method: Composition-based stats. Identities = 128/162 (79%), Positives = 144/162 (88%) Query: 23 DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82 D F+ ++ E+ +GF+ D ++ WARTGSLMWMTFGLACCAVEMMQASMPRYD+ERF Sbjct: 64 DPFFTSLNRELADQGFITAPADAVINWARTGSLMWMTFGLACCAVEMMQASMPRYDMERF 123 Query: 83 GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142 G APRASPRQSD+MIVAGTLTNKMA ALR+VYDQMP PRYV+SMGSCANGGGYYHYSYSV Sbjct: 124 GMAPRASPRQSDLMIVAGTLTNKMAPALRKVYDQMPAPRYVVSMGSCANGGGYYHYSYSV 183 Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 VRGCDRIVPVDIYVPGCPPTAEALIYG+L LQKK+RR G ++ Sbjct: 184 VRGCDRIVPVDIYVPGCPPTAEALIYGLLQLQKKMRREGTIR 225 >gi|300311096|ref|YP_003775188.1| NADH dehydrogenase I subunit B [Herbaspirillum seropedicae SmR1] gi|300073881|gb|ADJ63280.1| NADH dehydrogenase I (Chain B) oxidoreductase protein [Herbaspirillum seropedicae SmR1] Length = 158 Score = 246 bits (628), Expect = 1e-63, Method: Composition-based stats. Identities = 111/151 (73%), Positives = 129/151 (85%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 + ++GF+ TS+D+++ W RTGSL MTFGLACCAVEMM RYDL+RFG R SPRQ Sbjct: 6 VLNEGFVTTSLDKVINWTRTGSLWPMTFGLACCAVEMMHVGASRYDLDRFGAVFRPSPRQ 65 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 SD+MIVAGTL NKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPV Sbjct: 66 SDLMIVAGTLCNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPV 125 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 D+YVPGCPPTAEAL+YG++ LQ KI+R + Sbjct: 126 DVYVPGCPPTAEALLYGVIQLQNKIKRTNTI 156 >gi|157117673|ref|XP_001658881.1| NADH-plastoquinone oxidoreductase [Aedes aegypti] gi|108875970|gb|EAT40195.1| NADH-plastoquinone oxidoreductase [Aedes aegypti] Length = 215 Score = 246 bits (628), Expect = 1e-63, Method: Composition-based stats. Identities = 113/188 (60%), Positives = 140/188 (74%), Gaps = 5/188 (2%) Query: 2 GLTTVNQKIISGQSSCSLEKVDADFSRI-----SSEITHKGFLVTSVDQLVTWARTGSLM 56 + TVN I + + + + D + + + V +D ++ W R GS+ Sbjct: 23 AVDTVNMNQIREKGTLPVVEKDKPEKLPYSPFGTKQSNWADWTVARLDDVLNWGRKGSIW 82 Query: 57 WMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQ 116 +TFGLACCAVEMM + PRYD++RFG RASPRQ+DV+IVAGTLTNKMA ALR+VYDQ Sbjct: 83 PLTFGLACCAVEMMHIAAPRYDMDRFGVVFRASPRQADVIIVAGTLTNKMAPALRKVYDQ 142 Query: 117 MPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKK 176 MPEPR+VISMGSCANGGGYYHYSYSVVRGCDRI+PVDIYVPGCPPTAEAL+YGIL LQKK Sbjct: 143 MPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALLYGILQLQKK 202 Query: 177 IRRVGNVK 184 ++R+ ++ Sbjct: 203 VKRMKTLQ 210 >gi|299751278|ref|XP_002911618.1| NADH-ubiquinone oxidoreductase 20 kDa subunit [Coprinopsis cinerea okayama7#130] gi|298409301|gb|EFI28124.1| NADH-ubiquinone oxidoreductase 20 kDa subunit [Coprinopsis cinerea okayama7#130] Length = 223 Score = 246 bits (628), Expect = 1e-63, Method: Composition-based stats. Identities = 111/175 (63%), Positives = 136/175 (77%) Query: 8 QKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAV 67 + S Q ++ K ++ + + ++++++D++ WAR GS+ MTFGLACCAV Sbjct: 42 ESATSTQPYTAIAKQGSNQLSLETPQNKAEYVLSTLDKVANWARQGSMWPMTFGLACCAV 101 Query: 68 EMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMG 127 EMM + RYD +R G RASPRQSD+MIVAGTLTNKMA ALR+VYDQMPEPR+VISMG Sbjct: 102 EMMHMAAARYDQDRLGVVFRASPRQSDIMIVAGTLTNKMAPALRKVYDQMPEPRWVISMG 161 Query: 128 SCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182 SCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG+L LQ+K+RR Sbjct: 162 SCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGMLQLQRKMRRSRK 216 >gi|195457088|ref|XP_002075420.1| GK17823 [Drosophila willistoni] gi|194171505|gb|EDW86406.1| GK17823 [Drosophila willistoni] Length = 229 Score = 246 bits (628), Expect = 1e-63, Method: Composition-based stats. Identities = 108/187 (57%), Positives = 138/187 (73%), Gaps = 6/187 (3%) Query: 4 TTVNQKIISGQSSCSLEKVDADFSRI------SSEITHKGFLVTSVDQLVTWARTGSLMW 57 N + Q + + + + + + + + + +D L+ W R GS+ Sbjct: 38 VNANAVWVRQQQTLPVVESPDTLPKKGYSPFGTKQSSMAEWSLARLDDLLNWGRKGSIWP 97 Query: 58 MTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQM 117 +TFGLACCAVEMM + PRYD++R+G RASPRQ+DV+IVAGTLTNKMA ALR+VYDQM Sbjct: 98 LTFGLACCAVEMMHIAAPRYDMDRYGVVFRASPRQADVIIVAGTLTNKMAPALRKVYDQM 157 Query: 118 PEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 PEPR+VISMGSCANGGGYYHYSYSVVRGCDRI+PVDIYVPGCPPTAEAL+YG+L LQKK+ Sbjct: 158 PEPRWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALMYGVLQLQKKV 217 Query: 178 RRVGNVK 184 +R+ ++ Sbjct: 218 KRMKTLQ 224 >gi|58381050|ref|XP_310968.2| AGAP000170-PA [Anopheles gambiae str. PEST] gi|55243649|gb|EAA06474.3| AGAP000170-PA [Anopheles gambiae str. PEST] Length = 207 Score = 246 bits (628), Expect = 1e-63, Method: Composition-based stats. Identities = 107/145 (73%), Positives = 127/145 (87%) Query: 40 VTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVA 99 V +D ++ W R GS+ +TFGLACCAVEMM + PRYD++RFG RASPRQ+DV+IVA Sbjct: 58 VARLDDVLNWGRKGSIWPLTFGLACCAVEMMHIAAPRYDMDRFGVVFRASPRQADVIIVA 117 Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGC 159 GTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRI+PVDIYVPGC Sbjct: 118 GTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVPGC 177 Query: 160 PPTAEALIYGILLLQKKIRRVGNVK 184 PPTAEAL+YG+L LQKK++R+ ++ Sbjct: 178 PPTAEALLYGVLQLQKKVKRMKTLQ 202 >gi|259482901|tpe|CBF77819.1| TPA: NADH-ubiquinone oxidoreductase subunit B, putative (AFU_orthologue; AFUA_4G05860) [Aspergillus nidulans FGSC A4] Length = 228 Score = 245 bits (627), Expect = 1e-63, Method: Composition-based stats. Identities = 117/183 (63%), Positives = 139/183 (75%), Gaps = 2/183 (1%) Query: 4 TTVNQKIISGQSSCSLEKVDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFG 61 T + ++ +GQS + +V + S E +++T++DQ+ WAR SL MTFG Sbjct: 41 TALERQGNAGQSLTASGQVRREVPLPSQEKKEGAMQYVLTTLDQVANWARQSSLWPMTFG 100 Query: 62 LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPR 121 LACCAVEMM S PRYD +R G RASPRQSDVMIVAGTLTNKMA ALR+VYDQMP+PR Sbjct: 101 LACCAVEMMHLSTPRYDQDRLGIIFRASPRQSDVMIVAGTLTNKMAPALRQVYDQMPDPR 160 Query: 122 YVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181 +VISMGSCANGGGYYHYSYSVVRGCDRIVPVD+YVPGCPPT+EAL+YGI LQKK+R Sbjct: 161 WVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTSEALMYGIFQLQKKMRHTR 220 Query: 182 NVK 184 + Sbjct: 221 ITR 223 >gi|301776330|ref|XP_002923562.1| PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial-like [Ailuropoda melanoleuca] Length = 240 Score = 245 bits (627), Expect = 1e-63, Method: Composition-based stats. Identities = 116/174 (66%), Positives = 137/174 (78%), Gaps = 1/174 (0%) Query: 12 SGQSSCSLEKVDADFSRISSEITHKG-FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMM 70 + + A + ++ + +G ++V +D L+ WAR SL MTFGLACCAVEMM Sbjct: 62 PSSTQPAASTAGAVVPKSTALPSSRGEYVVAKLDDLINWARRSSLWPMTFGLACCAVEMM 121 Query: 71 QASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCA 130 + PRYD++RFG RASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYV+SMGSCA Sbjct: 122 HMAAPRYDMDRFGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCA 181 Query: 131 NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQ+KI+R ++ Sbjct: 182 NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQRKIKRERKLR 235 >gi|3342734|gb|AAC27669.1| NUKM_HUMAN, partial CDS [Homo sapiens] Length = 158 Score = 245 bits (627), Expect = 2e-63, Method: Composition-based stats. Identities = 114/151 (75%), Positives = 129/151 (85%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93 + ++V +D LV WAR SL MTFGLACCAVEMM + PRYD++RFG RASPRQS Sbjct: 3 SRGEYVVAKLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQS 62 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD 153 DVMIVAGTLTNKMA ALR+VYDQMPEPRYV+SMGSCANGGGYYHYSYSVVRGCDRIVPVD Sbjct: 63 DVMIVAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPVD 122 Query: 154 IYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 IY+PGCPPTAEAL+YGIL LQ+KI+R ++ Sbjct: 123 IYIPGCPPTAEALLYGILQLQRKIKRERRLQ 153 >gi|303316328|ref|XP_003068166.1| NADH-ubiquinone oxidoreductase, putative [Coccidioides posadasii C735 delta SOWgp] gi|240107847|gb|EER26021.1| NADH-ubiquinone oxidoreductase, putative [Coccidioides posadasii C735 delta SOWgp] gi|320037899|gb|EFW19835.1| NADH-ubiquinone oxidoreductase 20 kDa subunit [Coccidioides posadasii str. Silveira] Length = 227 Score = 245 bits (627), Expect = 2e-63, Method: Composition-based stats. Identities = 118/177 (66%), Positives = 134/177 (75%), Gaps = 3/177 (1%) Query: 11 ISGQSSCSLEKVDADFSRISSEITHKG---FLVTSVDQLVTWARTGSLMWMTFGLACCAV 67 QSS + K D + S+ +G F +T++DQ+ WAR SL MTFGLACCAV Sbjct: 46 TQTQSSMTQTKKDRREVPLPSQQKKEGAMQFALTTLDQVANWARQSSLWPMTFGLACCAV 105 Query: 68 EMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMG 127 EMM S PRYD +R G RASPRQSDVMIVAGTLTNKMA ALR+VYDQMP+PR+VISMG Sbjct: 106 EMMHLSTPRYDQDRLGIIFRASPRQSDVMIVAGTLTNKMAPALRQVYDQMPDPRWVISMG 165 Query: 128 SCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 SCANGGGYYHYSYSV RGCDRIVPVDIYVPGCPPT+EAL+YGI LQKK+R + Sbjct: 166 SCANGGGYYHYSYSVTRGCDRIVPVDIYVPGCPPTSEALMYGIFQLQKKMRHTQITR 222 >gi|195123641|ref|XP_002006312.1| GI18637 [Drosophila mojavensis] gi|193911380|gb|EDW10247.1| GI18637 [Drosophila mojavensis] Length = 223 Score = 245 bits (627), Expect = 2e-63, Method: Composition-based stats. Identities = 106/155 (68%), Positives = 131/155 (84%) Query: 30 SSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS 89 + + + + + +D L+ W R GS+ +TFGLACCAVEMM + PRYD++R+G RAS Sbjct: 64 TKQSSMAEWSLARLDDLLNWGRKGSIWPLTFGLACCAVEMMHIAAPRYDMDRYGVVFRAS 123 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQ+DV+IVAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRI Sbjct: 124 PRQADVIIVAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRI 183 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 +PVDIYVPGCPPTAEAL+YG+L LQKK++R+ ++ Sbjct: 184 IPVDIYVPGCPPTAEALMYGVLQLQKKVKRMKTLQ 218 >gi|121706424|ref|XP_001271474.1| NADH-ubiquinone oxidoreductase subunit B, putative [Aspergillus clavatus NRRL 1] gi|119399622|gb|EAW10048.1| NADH-ubiquinone oxidoreductase subunit B, putative [Aspergillus clavatus NRRL 1] Length = 225 Score = 245 bits (626), Expect = 2e-63, Method: Composition-based stats. Identities = 118/183 (64%), Positives = 136/183 (74%), Gaps = 2/183 (1%) Query: 4 TTVNQKIISGQSSCSLEKVDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFG 61 T + + SGQ KV + S E +++T++DQ+ WAR SL MTFG Sbjct: 38 TALEHRSQSGQPLTVSGKVRKEVPLPSQEKKEGAMQYVLTTLDQVANWARQSSLWPMTFG 97 Query: 62 LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPR 121 LACCAVEMM S PRYD +R G RASPRQSDVMIVAGTLTNKMA ALR+VYDQMP+PR Sbjct: 98 LACCAVEMMHLSTPRYDQDRLGIIFRASPRQSDVMIVAGTLTNKMAPALRQVYDQMPDPR 157 Query: 122 YVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181 +VISMGSCANGGGYYHYSYSVVRGCDRIVPVD+YVPGCPPT+EAL+YGI LQKK+R Sbjct: 158 WVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTSEALMYGIFQLQKKMRHTR 217 Query: 182 NVK 184 + Sbjct: 218 ITR 220 >gi|270158113|ref|ZP_06186770.1| NADH-quinone oxidoreductase B subunit [Legionella longbeachae D-4968] gi|289163622|ref|YP_003453760.1| NADH dehydrogenase I chain B [Legionella longbeachae NSW150] gi|269990138|gb|EEZ96392.1| NADH-quinone oxidoreductase B subunit [Legionella longbeachae D-4968] gi|288856795|emb|CBJ10606.1| NADH dehydrogenase I chain B [Legionella longbeachae NSW150] Length = 158 Score = 245 bits (626), Expect = 2e-63, Method: Composition-based stats. Identities = 115/154 (74%), Positives = 131/154 (85%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP 90 +E+ GF+ TSV++LV WAR+GS+ MTFGLACCAVEMM A RYDL+RFG R SP Sbjct: 4 AELQKSGFVTTSVEKLVGWARSGSMWPMTFGLACCAVEMMHAGAARYDLDRFGIIFRPSP 63 Query: 91 RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150 RQSDVMIVAGTL NKMA ALR+VYDQMPEPR+V+SMGSCANGGGYYHYSYSVVRGCDRIV Sbjct: 64 RQSDVMIVAGTLCNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIV 123 Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 PVD+YVPGCPPTAEAL+YGI+ LQ KIR ++ Sbjct: 124 PVDVYVPGCPPTAEALLYGIIQLQNKIRHKKILE 157 >gi|126002095|ref|XP_001352261.1| GA21592 [Drosophila pseudoobscura pseudoobscura] gi|195175510|ref|XP_002028490.1| GL16625 [Drosophila persimilis] gi|54640648|gb|EAL29409.1| GA21592 [Drosophila pseudoobscura pseudoobscura] gi|194103687|gb|EDW25730.1| GL16625 [Drosophila persimilis] Length = 220 Score = 245 bits (626), Expect = 2e-63, Method: Composition-based stats. Identities = 106/145 (73%), Positives = 127/145 (87%) Query: 40 VTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVA 99 + +D L+ W R GS+ +TFGLACCAVEMM + PRYD++R+G RASPRQ+DV+IVA Sbjct: 71 LARLDDLLNWGRKGSIWPLTFGLACCAVEMMHIAAPRYDMDRYGVVFRASPRQADVIIVA 130 Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGC 159 GTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRI+PVDIYVPGC Sbjct: 131 GTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVPGC 190 Query: 160 PPTAEALIYGILLLQKKIRRVGNVK 184 PPTAEAL+YG+L LQKK++R+ ++ Sbjct: 191 PPTAEALMYGVLQLQKKVKRMKTLQ 215 >gi|296136705|ref|YP_003643947.1| hypothetical protein Tint_2267 [Thiomonas intermedia K12] gi|294340860|emb|CAZ89255.1| NADH-quinone oxidoreductase subunit 6 (NADH dehydrogenase I chain 6) (NDH-1 subunit 6) [Thiomonas sp. 3As] gi|295796827|gb|ADG31617.1| hypothetical protein Tint_2267 [Thiomonas intermedia K12] Length = 158 Score = 245 bits (626), Expect = 2e-63, Method: Composition-based stats. Identities = 112/151 (74%), Positives = 127/151 (84%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 + +GF+ TS D+L+ W RTGSL MTFGLACCAVEMM A RYDL+RFG R SPRQ Sbjct: 6 VLQEGFITTSADKLINWTRTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGIVFRPSPRQ 65 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 SD+MIVAGTL NKMA ALR+VYDQM EPR+V+SMGSCANGGGYYHYSYSVVRGCDRIVPV Sbjct: 66 SDLMIVAGTLCNKMAPALRKVYDQMAEPRWVLSMGSCANGGGYYHYSYSVVRGCDRIVPV 125 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 D+YVPGCPPTAEAL+YG++ LQ KIRR + Sbjct: 126 DVYVPGCPPTAEALLYGLIQLQNKIRRTETI 156 >gi|15239782|ref|NP_196738.1| NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial [Arabidopsis thaliana] gi|2499327|sp|Q42577|NDUS7_ARATH RecName: Full=NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial; AltName: Full=Complex I-20kD; Short=CI-20kD; Flags: Precursor gi|16226316|gb|AAL16132.1|AF428300_1 AT5g11770/T22P22_160 [Arabidopsis thaliana] gi|643090|emb|CAA58887.1| NADH dehydrogenase [Arabidopsis thaliana] gi|7573391|emb|CAB87695.1| NADH dehydrogenase (ubiquinone) [Arabidopsis thaliana] gi|15810287|gb|AAL07031.1| putative NADH dehydrogenase (ubiquinone) [Arabidopsis thaliana] gi|20466764|gb|AAM20699.1| NADH dehydrogenase / ubiquinone [Arabidopsis thaliana] gi|21537333|gb|AAM61674.1| NADH dehydrogenase ubiquinone [Arabidopsis thaliana] gi|22136468|gb|AAM91312.1| NADH dehydrogenase / ubiquinone [Arabidopsis thaliana] gi|332004336|gb|AED91719.1| NADH dehydrogenase (ubiquinone) Fe-S protein 7 [Arabidopsis thaliana] Length = 218 Score = 245 bits (626), Expect = 2e-63, Method: Composition-based stats. Identities = 114/144 (79%), Positives = 124/144 (86%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 F+++ VD L+ WARTGS+ MTFGLACCAVEMM RYDL+RFG R SPRQSD MI Sbjct: 67 FVISKVDDLMNWARTGSIWPMTFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDCMI 126 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP Sbjct: 127 VAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 186 Query: 158 GCPPTAEALIYGILLLQKKIRRVG 181 GCPPTAEAL+YG+L LQKKI R Sbjct: 187 GCPPTAEALLYGLLQLQKKINRRK 210 >gi|198284143|ref|YP_002220464.1| NADH dehydrogenase subunit B [Acidithiobacillus ferrooxidans ATCC 53993] gi|218667459|ref|YP_002426797.1| NADH-quinone oxidoreductase, B subunit [Acidithiobacillus ferrooxidans ATCC 23270] gi|218527940|sp|B5EM21|NUOB1_ACIF5 RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName: Full=NADH dehydrogenase I subunit B 1; AltName: Full=NDH-1 subunit B 1 gi|238065067|sp|B7J6H2|NUOB_ACIF2 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|198248664|gb|ACH84257.1| NADH-quinone oxidoreductase, B subunit [Acidithiobacillus ferrooxidans ATCC 53993] gi|218519672|gb|ACK80258.1| NADH-quinone oxidoreductase, B subunit [Acidithiobacillus ferrooxidans ATCC 23270] Length = 158 Score = 245 bits (626), Expect = 2e-63, Method: Composition-based stats. Identities = 117/151 (77%), Positives = 130/151 (86%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 I KGF+ TS+D +V W+RTGSL MTFGLACCAVEMM A RYDL+RFG R SPRQ Sbjct: 6 ILEKGFVTTSIDTVVNWSRTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGLLFRPSPRQ 65 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 SD+MIVAGTL NKMA ALR+VYDQMPEPR+V+SMGSCANGGGYYHYSYSVVRGCDRIVPV Sbjct: 66 SDLMIVAGTLVNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIVPV 125 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 DIYVPGCPPTAEALI+G++ LQKKIRR + Sbjct: 126 DIYVPGCPPTAEALIFGLIQLQKKIRRTNTI 156 >gi|66770743|gb|AAY54683.1| IP08160p [Drosophila melanogaster] Length = 213 Score = 245 bits (626), Expect = 2e-63, Method: Composition-based stats. Identities = 107/144 (74%), Positives = 125/144 (86%) Query: 41 TSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAG 100 +D L+ W R GSL +TFGLACCAVEMM + PRYD++R+G RASPRQ+DV+IVAG Sbjct: 65 ARLDDLLNWGRKGSLWPLTFGLACCAVEMMHIAAPRYDMDRYGVVFRASPRQADVLIVAG 124 Query: 101 TLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCP 160 TLTNKMA A R++YDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCP Sbjct: 125 TLTNKMAPAFRKIYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCP 184 Query: 161 PTAEALIYGILLLQKKIRRVGNVK 184 PTAEAL+YGIL LQKK++R+ ++ Sbjct: 185 PTAEALMYGILQLQKKVKRMRTLQ 208 >gi|152980178|ref|YP_001353153.1| NADH dehydrogenase I chain B [Janthinobacterium sp. Marseille] gi|218527992|sp|A6SY06|NUOB_JANMA RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|151280255|gb|ABR88665.1| NADH dehydrogenase I chain B [Janthinobacterium sp. Marseille] Length = 158 Score = 245 bits (626), Expect = 2e-63, Method: Composition-based stats. Identities = 113/151 (74%), Positives = 128/151 (84%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 + ++GF+ T+ D+L+ W RTGS+ MTFGLACCAVEMM A RYDL+RFG R SPRQ Sbjct: 6 VLNEGFVTTTADKLINWTRTGSMWPMTFGLACCAVEMMHAGASRYDLDRFGVVFRPSPRQ 65 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 SDVMIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPV Sbjct: 66 SDVMIVAGTLCNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPV 125 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 D+YVPGCPPTAEAL+YGI+ LQ KIRR + Sbjct: 126 DVYVPGCPPTAEALLYGIMQLQNKIRRTNTI 156 >gi|195381615|ref|XP_002049543.1| GJ21650 [Drosophila virilis] gi|194144340|gb|EDW60736.1| GJ21650 [Drosophila virilis] Length = 223 Score = 245 bits (625), Expect = 2e-63, Method: Composition-based stats. Identities = 106/155 (68%), Positives = 131/155 (84%) Query: 30 SSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS 89 + + + + + +D L+ W R GS+ +TFGLACCAVEMM + PRYD++R+G RAS Sbjct: 64 TKQASMAEWSMARLDDLLNWGRKGSIWPLTFGLACCAVEMMHIAAPRYDMDRYGVVFRAS 123 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQ+DV+IVAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRI Sbjct: 124 PRQADVIIVAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRI 183 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 +PVDIYVPGCPPTAEAL+YG+L LQKK++R+ ++ Sbjct: 184 IPVDIYVPGCPPTAEALLYGVLQLQKKVKRMRTLQ 218 >gi|17546780|ref|NP_520182.1| NADH dehydrogenase subunit B [Ralstonia solanacearum GMI1000] gi|83746298|ref|ZP_00943351.1| NADH-quinone oxidoreductase chain B [Ralstonia solanacearum UW551] gi|207723874|ref|YP_002254272.1| nadh dehydrogenaseI(chain b) protein [Ralstonia solanacearum MolK2] gi|207742736|ref|YP_002259128.1| nadh dehydrogenaseI(chain b) protein [Ralstonia solanacearum IPO1609] gi|81504305|sp|Q8XXQ2|NUOB_RALSO RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|17429080|emb|CAD15768.1| probable nadh dehydrogenaseI(chain b) oxidoreductase protein [Ralstonia solanacearum GMI1000] gi|83727048|gb|EAP74173.1| NADH-quinone oxidoreductase chain B [Ralstonia solanacearum UW551] gi|206589079|emb|CAQ36041.1| nadh dehydrogenaseI(chain b) protein [Ralstonia solanacearum MolK2] gi|206594130|emb|CAQ61057.1| nadh dehydrogenaseI(chain b) protein [Ralstonia solanacearum IPO1609] gi|299066334|emb|CBJ37518.1| NADH-quinone oxidoreductase subunit B [Ralstonia solanacearum CMR15] Length = 160 Score = 245 bits (625), Expect = 2e-63, Method: Composition-based stats. Identities = 115/151 (76%), Positives = 128/151 (84%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 + ++GF+ T+ D+L+ W RTGSL MTFGLACCAVEMM A RYDL+RFG R SPRQ Sbjct: 6 VLNEGFVTTTADKLINWTRTGSLWPMTFGLACCAVEMMHAGASRYDLDRFGVVFRPSPRQ 65 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 SDVMIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPV Sbjct: 66 SDVMIVAGTLCNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPV 125 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 D+YVPGCPPTAEALIYGI+ LQ KIRR + Sbjct: 126 DVYVPGCPPTAEALIYGIIQLQAKIRRTNTI 156 >gi|24651058|ref|NP_651698.1| CG2014 [Drosophila melanogaster] gi|7301791|gb|AAF56901.1| CG2014 [Drosophila melanogaster] Length = 212 Score = 245 bits (625), Expect = 2e-63, Method: Composition-based stats. Identities = 107/144 (74%), Positives = 125/144 (86%) Query: 41 TSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAG 100 +D L+ W R GSL +TFGLACCAVEMM + PRYD++R+G RASPRQ+DV+IVAG Sbjct: 64 ARLDDLLNWGRKGSLWPLTFGLACCAVEMMHIAAPRYDMDRYGVVFRASPRQADVLIVAG 123 Query: 101 TLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCP 160 TLTNKMA A R++YDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCP Sbjct: 124 TLTNKMAPAFRKIYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCP 183 Query: 161 PTAEALIYGILLLQKKIRRVGNVK 184 PTAEAL+YGIL LQKK++R+ ++ Sbjct: 184 PTAEALMYGILQLQKKVKRMRTLQ 207 >gi|187929292|ref|YP_001899779.1| NADH dehydrogenase subunit B [Ralstonia pickettii 12J] gi|241663483|ref|YP_002981843.1| NADH dehydrogenase subunit B [Ralstonia pickettii 12D] gi|309781853|ref|ZP_07676586.1| NADH dehydrogenase (ubiquinone), B subunit [Ralstonia sp. 5_7_47FAA] gi|218528007|sp|B2U7R0|NUOB_RALPJ RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|187726182|gb|ACD27347.1| NADH-quinone oxidoreductase, B subunit [Ralstonia pickettii 12J] gi|240865510|gb|ACS63171.1| NADH-quinone oxidoreductase, B subunit [Ralstonia pickettii 12D] gi|308919494|gb|EFP65158.1| NADH dehydrogenase (ubiquinone), B subunit [Ralstonia sp. 5_7_47FAA] Length = 160 Score = 245 bits (625), Expect = 3e-63, Method: Composition-based stats. Identities = 115/151 (76%), Positives = 128/151 (84%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 + ++GF+ T+ D+L+ W RTGSL MTFGLACCAVEMM A RYDL+RFG R SPRQ Sbjct: 6 VLNEGFVTTTADKLINWTRTGSLWPMTFGLACCAVEMMHAGASRYDLDRFGVVFRPSPRQ 65 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 SDVMIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPV Sbjct: 66 SDVMIVAGTLCNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPV 125 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 D+YVPGCPPTAEALIYGI+ LQ KIRR + Sbjct: 126 DVYVPGCPPTAEALIYGIIQLQAKIRRTNTI 156 >gi|194765240|ref|XP_001964735.1| GF23344 [Drosophila ananassae] gi|190615007|gb|EDV30531.1| GF23344 [Drosophila ananassae] Length = 212 Score = 245 bits (625), Expect = 3e-63, Method: Composition-based stats. Identities = 109/155 (70%), Positives = 130/155 (83%) Query: 30 SSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS 89 ++ + + V +D LV W+R GS+ MTFGLACCAVEMM + PRYD++R+G R S Sbjct: 53 GNQSSTGEWAVARLDDLVNWSRKGSIWPMTFGLACCAVEMMHFAAPRYDMDRYGVLFRES 112 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQ+D MIVAGTLTNKMA ALR+VYD+MP+PR+VISMGSCANGGGYYHYSYSVVRGCDRI Sbjct: 113 PRQADCMIVAGTLTNKMAPALRKVYDEMPDPRWVISMGSCANGGGYYHYSYSVVRGCDRI 172 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 VPVDIYVPGCPPTAEAL+YG+L LQKKI+R+ V+ Sbjct: 173 VPVDIYVPGCPPTAEALMYGVLQLQKKIKRIKTVQ 207 >gi|88812975|ref|ZP_01128218.1| NADH dehydrogenase beta subunit [Nitrococcus mobilis Nb-231] gi|88789753|gb|EAR20877.1| NADH dehydrogenase beta subunit [Nitrococcus mobilis Nb-231] Length = 158 Score = 245 bits (625), Expect = 3e-63, Method: Composition-based stats. Identities = 113/151 (74%), Positives = 128/151 (84%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 + +G + TS D+L+ WARTGSL MTFGLACCAVEMM A RYDL+RFG R SPRQ Sbjct: 6 VLERGVVTTSADKLINWARTGSLWPMTFGLACCAVEMMHAGASRYDLDRFGIVFRPSPRQ 65 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 SDVMIVAGTL NKMA ALRRVYDQM +P++VISMGSCANGGGYYHYSY+VVRGCDRIVPV Sbjct: 66 SDVMIVAGTLVNKMAPALRRVYDQMADPKWVISMGSCANGGGYYHYSYAVVRGCDRIVPV 125 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 D+YVPGCPPTAEAL++GI+ LQKKIRR + Sbjct: 126 DVYVPGCPPTAEALLFGIIQLQKKIRRTNTI 156 >gi|30249736|ref|NP_841806.1| NADH dehydrogenase subunit B [Nitrosomonas europaea ATCC 19718] gi|75540322|sp|Q82TU4|NUOB_NITEU RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|30180773|emb|CAD85687.1| Respiratory-chain NADH dehydrogenase 20 Kd subunit [Nitrosomonas europaea ATCC 19718] Length = 158 Score = 245 bits (625), Expect = 3e-63, Method: Composition-based stats. Identities = 115/151 (76%), Positives = 127/151 (84%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 + KGF+ TS+D L+ W RTGS+ MTFGLACCAVEMMQ RYDL+RFG R SPRQ Sbjct: 6 VLDKGFVTTSLDSLINWGRTGSMWPMTFGLACCAVEMMQTGASRYDLDRFGIVFRPSPRQ 65 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 SDVMIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPV Sbjct: 66 SDVMIVAGTLCNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPV 125 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 DIYVPGCPPTAEAL+YGI+ LQ KI+R + Sbjct: 126 DIYVPGCPPTAEALLYGIIQLQNKIKRTNTI 156 >gi|300691026|ref|YP_003752021.1| NADH-quinone oxidoreductase subunit B [Ralstonia solanacearum PSI07] gi|299078086|emb|CBJ50729.1| NADH-quinone oxidoreductase subunit B [Ralstonia solanacearum PSI07] Length = 160 Score = 245 bits (625), Expect = 3e-63, Method: Composition-based stats. Identities = 115/151 (76%), Positives = 128/151 (84%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 + ++GF+ T+ D+L+ W RTGSL MTFGLACCAVEMM A RYDL+RFG R SPRQ Sbjct: 6 VLNEGFVTTTADKLINWTRTGSLWPMTFGLACCAVEMMHAGASRYDLDRFGVVFRPSPRQ 65 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 SDVMIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPV Sbjct: 66 SDVMIVAGTLCNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPV 125 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 D+YVPGCPPTAEALIYGI+ LQ KIRR + Sbjct: 126 DVYVPGCPPTAEALIYGIIQLQAKIRRTNTI 156 >gi|2499328|sp|Q43844|NDUS7_SOLTU RecName: Full=NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial; AltName: Full=Complex I-20 kDa; Short=CI-20kD; Flags: Precursor gi|1235607|emb|CAA65451.1| NADH-ubiquinone oxidoreductase [Solanum tuberosum] Length = 213 Score = 244 bits (624), Expect = 3e-63, Method: Composition-based stats. Identities = 117/181 (64%), Positives = 138/181 (76%), Gaps = 1/181 (0%) Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62 L +++Q+ S ++ S + + ++++ VD L+ WAR GS+ MTFGL Sbjct: 28 LPSLSQQPASSPAT-SGGAQPPSMNTPAGISKPAEYVISKVDDLMNWARRGSIWPMTFGL 86 Query: 63 ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122 ACCAVEMM A RYD +RFG R SPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPR+ Sbjct: 87 ACCAVEMMHAGAARYDFDRFGIIFRPSPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRW 146 Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182 VISMGSCANGGGYYHYSY+VVRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQKKI R + Sbjct: 147 VISMGSCANGGGYYHYSYAVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKINRRKD 206 Query: 183 V 183 + Sbjct: 207 L 207 >gi|292493667|ref|YP_003529106.1| NADH-quinone oxidoreductase subunit beta [Nitrosococcus halophilus Nc4] gi|291582262|gb|ADE16719.1| NADH-quinone oxidoreductase, B subunit [Nitrosococcus halophilus Nc4] Length = 158 Score = 244 bits (624), Expect = 3e-63, Method: Composition-based stats. Identities = 116/151 (76%), Positives = 128/151 (84%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 + +G + T+ D+L+ WARTGSL MTFGLACCAVEMM A RYDL+RFG R SPRQ Sbjct: 6 VLERGVVTTTADKLINWARTGSLWPMTFGLACCAVEMMHAGASRYDLDRFGVVFRPSPRQ 65 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 SDVMIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPV Sbjct: 66 SDVMIVAGTLVNKMAPALRKVYDQMSEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPV 125 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 DIYVPGCPPTAEAL+YGI+ LQKKIRR + Sbjct: 126 DIYVPGCPPTAEALLYGIIQLQKKIRRNYTI 156 >gi|113170492|ref|YP_717283.1| ndhK [Ostreococcus tauri] gi|112806899|emb|CAL36405.1| unnamed protein product [Ostreococcus tauri] Length = 166 Score = 244 bits (624), Expect = 3e-63, Method: Composition-based stats. Identities = 113/155 (72%), Positives = 127/155 (81%) Query: 29 ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88 + + + ++++ VD L+ WAR GSL MTFGLACCAVEMM RYDL+RFG R Sbjct: 6 YTGQPSSSEYIISKVDGLINWARQGSLWPMTFGLACCAVEMMHTGAARYDLDRFGMIFRP 65 Query: 89 SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 148 SPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDR Sbjct: 66 SPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDR 125 Query: 149 IVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 IVPVDIYVPGCPPTAEAL+YG+L LQKKI + Sbjct: 126 IVPVDIYVPGCPPTAEALLYGLLQLQKKISQNKTT 160 >gi|149242844|ref|XP_001526472.1| NADH-ubiquinone oxidoreductase 20 kDa subunit [Lodderomyces elongisporus NRRL YB-4239] gi|146450595|gb|EDK44851.1| NADH-ubiquinone oxidoreductase 20 kDa subunit [Lodderomyces elongisporus NRRL YB-4239] Length = 224 Score = 244 bits (624), Expect = 3e-63, Method: Composition-based stats. Identities = 111/184 (60%), Positives = 134/184 (72%), Gaps = 2/184 (1%) Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTF 60 T V K + +++ DF +S + + +TS+D + WAR S +TF Sbjct: 36 NTPVASKRYVSSKELTPKELPTDFPLMSQKTASSAVDYALTSLDTIANWARKSSFWPVTF 95 Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 GLACCAVEMM S PRYD +R G RASPRQSD+MIVAGTLTNKMA ALR+VYDQMP+P Sbjct: 96 GLACCAVEMMHVSAPRYDQDRLGIIFRASPRQSDIMIVAGTLTNKMAPALRQVYDQMPDP 155 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 ++VISMGSCANGGGYYHYSYSVVRGCDR+VPVDIYVPGCPPTAEAL+YG+ LQKK+ + Sbjct: 156 KWVISMGSCANGGGYYHYSYSVVRGCDRVVPVDIYVPGCPPTAEALMYGVFQLQKKMMKT 215 Query: 181 GNVK 184 + Sbjct: 216 RITR 219 >gi|114864804|gb|ABI83769.1| NADH-ubiquinone oxidoreductase [Anopheles funestus] Length = 207 Score = 244 bits (624), Expect = 3e-63, Method: Composition-based stats. Identities = 107/144 (74%), Positives = 126/144 (87%) Query: 40 VTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVA 99 V +D ++ W R GS+ +TFGLACCAVEMM + PRYD++RFG RASPRQ+DV+IVA Sbjct: 58 VARLDDVLNWGRKGSIWPLTFGLACCAVEMMHIAAPRYDMDRFGVVFRASPRQADVIIVA 117 Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGC 159 GTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRI+PVDIYVPGC Sbjct: 118 GTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVPGC 177 Query: 160 PPTAEALIYGILLLQKKIRRVGNV 183 PPTAEAL+YG+L LQKK++R+ + Sbjct: 178 PPTAEALLYGVLQLQKKVKRMKTL 201 >gi|77745495|gb|ABB02646.1| NADH-ubiquinone oxidoreductase subunit-like [Solanum tuberosum] Length = 213 Score = 244 bits (624), Expect = 3e-63, Method: Composition-based stats. Identities = 116/181 (64%), Positives = 139/181 (76%), Gaps = 1/181 (0%) Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62 L +++Q+ S ++ + + + + ++++ VD L+ WAR GS+ MTFGL Sbjct: 28 LPSLSQQPASSPATYGGAQPPS-MNTPAGISKPAEYVISKVDDLMNWARRGSIWPMTFGL 86 Query: 63 ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122 ACCAVEMM A RYD +RFG R SPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPR+ Sbjct: 87 ACCAVEMMHAGAARYDFDRFGIIFRPSPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRW 146 Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182 VISMGSCANGGGYYHYSY+VVRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQKKI R + Sbjct: 147 VISMGSCANGGGYYHYSYAVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKINRRKD 206 Query: 183 V 183 + Sbjct: 207 L 207 >gi|149927542|ref|ZP_01915796.1| NADH dehydrogenase subunit B [Limnobacter sp. MED105] gi|149823815|gb|EDM83041.1| NADH dehydrogenase subunit B [Limnobacter sp. MED105] Length = 158 Score = 244 bits (624), Expect = 3e-63, Method: Composition-based stats. Identities = 110/151 (72%), Positives = 127/151 (84%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 + ++GF+ T+ D+L+ W RTGSL MTFGLACCAVEMM A RYDL+RFG R SPRQ Sbjct: 6 VLNEGFITTTADKLINWGRTGSLWPMTFGLACCAVEMMHAGASRYDLDRFGIIFRPSPRQ 65 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 SD+MIVAGTL NKMA ALR+VYDQM EPR+V+SMGSCANGGGYYHYSYSVVRGCDRIVPV Sbjct: 66 SDLMIVAGTLCNKMAPALRKVYDQMAEPRWVLSMGSCANGGGYYHYSYSVVRGCDRIVPV 125 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 D+YVPGCPPTAEAL+YG+L LQ KI+ + Sbjct: 126 DVYVPGCPPTAEALMYGLLQLQNKIKTTSTI 156 >gi|291231230|ref|XP_002735571.1| PREDICTED: NADH dehydrogenase iron-sulfur protein 7, mitochondrial-like [Saccoglossus kowalevskii] Length = 220 Score = 244 bits (624), Expect = 3e-63, Method: Composition-based stats. Identities = 114/176 (64%), Positives = 129/176 (73%) Query: 8 QKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAV 67 K S + S + ++VT +D L WAR S+ MTFGLACCAV Sbjct: 39 TKQSQVTSVVPYRQRSTSIVPKSQKKNVGEYVVTGLDHLANWARRSSIWPMTFGLACCAV 98 Query: 68 EMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMG 127 EMM + PRYD++RFG RASPRQSD MIVAGTLTNKMA ALR+VYDQMPEPR+VISMG Sbjct: 99 EMMHMAAPRYDMDRFGIVFRASPRQSDCMIVAGTLTNKMAPALRKVYDQMPEPRWVISMG 158 Query: 128 SCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 SCANGGGYYHYSYSVVRG DR+VPVDIYVPGCPPTAEAL+YG L LQKKI+R + Sbjct: 159 SCANGGGYYHYSYSVVRGVDRVVPVDIYVPGCPPTAEALLYGFLQLQKKIKRQRMI 214 >gi|289741217|gb|ADD19356.1| NADH-ubiquinone oxidoreductase NUFS7/PSST/20 kDa subunit [Glossina morsitans morsitans] Length = 220 Score = 244 bits (624), Expect = 4e-63, Method: Composition-based stats. Identities = 108/174 (62%), Positives = 136/174 (78%), Gaps = 2/174 (1%) Query: 11 ISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMM 70 + S +K + F + + + + + +D L+ W R S+ +TFGLACCAVEMM Sbjct: 44 VVDPKSPLPKKGYSPFG--TKQSSTGEWTMARLDDLLNWGRKSSIWPLTFGLACCAVEMM 101 Query: 71 QASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCA 130 + PRYD++R+G RASPRQ+DV+IVAGTLTNKMA ALR+VYDQMPEPR+VISMGSCA Sbjct: 102 HIAAPRYDMDRYGVVFRASPRQADVIIVAGTLTNKMAPALRKVYDQMPEPRWVISMGSCA 161 Query: 131 NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 NGGGYYHYSYSVVRGCDRI+PVDIYVPGCPPTAEAL+YG+L LQKK++R+ ++ Sbjct: 162 NGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALMYGVLQLQKKVKRMKTLQ 215 >gi|116782796|gb|ABK22662.1| unknown [Picea sitchensis] Length = 205 Score = 244 bits (624), Expect = 4e-63, Method: Composition-based stats. Identities = 117/179 (65%), Positives = 131/179 (73%) Query: 5 TVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLAC 64 TV S SL + ++++ +D LV WAR GS+ MTFGLAC Sbjct: 21 TVAPTKAEAAGSSSLSAQTPYNPSATGLSKPAEYVISKIDALVNWARKGSIWPMTFGLAC 80 Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 CAVEMM RYDL+RFG R SPRQSD MIVAGTLTNKMA ALR+VYDQMPEPR+VI Sbjct: 81 CAVEMMHTGAARYDLDRFGIIFRPSPRQSDCMIVAGTLTNKMAPALRKVYDQMPEPRWVI 140 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG+L LQKKI R ++ Sbjct: 141 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGLLQLQKKIHRRKDL 199 >gi|194765258|ref|XP_001964744.1| GF23350 [Drosophila ananassae] gi|190615016|gb|EDV30540.1| GF23350 [Drosophila ananassae] Length = 211 Score = 244 bits (624), Expect = 4e-63, Method: Composition-based stats. Identities = 111/154 (72%), Positives = 129/154 (83%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP 90 + T + V +D L+ W R GS+ MTFGLACCAVEMM + PRYD++R+G RASP Sbjct: 53 DQKTWAEWTVARLDDLLNWGRKGSIWPMTFGLACCAVEMMHIAAPRYDMDRYGVVFRASP 112 Query: 91 RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150 RQ+D MIVAGTLTNKMA A+R+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRIV Sbjct: 113 RQADCMIVAGTLTNKMAPAMRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIV 172 Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 PVDIYVPGCPPTAEAL+YGIL LQKKI+R+ ++ Sbjct: 173 PVDIYVPGCPPTAEALMYGILQLQKKIKRMRTIQ 206 >gi|224088884|ref|XP_002308574.1| predicted protein [Populus trichocarpa] gi|118481270|gb|ABK92582.1| unknown [Populus trichocarpa] gi|222854550|gb|EEE92097.1| predicted protein [Populus trichocarpa] Length = 213 Score = 244 bits (624), Expect = 4e-63, Method: Composition-based stats. Identities = 117/178 (65%), Positives = 131/178 (73%) Query: 4 TTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLA 63 TT+ + S ++ F+++ VD L+ WARTGS+ MTFGLA Sbjct: 28 TTLPSLSPEPTPAPYTRAPPPSSSSLTGLSKPAEFVISKVDSLMNWARTGSIWPMTFGLA 87 Query: 64 CCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYV 123 CCAVEMM RYDL+RFG R SPRQSD MIVAGTLTNKMA ALR+VYDQMPEPR+V Sbjct: 88 CCAVEMMHTGAARYDLDRFGIIFRPSPRQSDCMIVAGTLTNKMAPALRKVYDQMPEPRWV 147 Query: 124 ISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181 ISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG+L LQKKI R Sbjct: 148 ISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGLLQLQKKIHRRK 205 >gi|134079540|emb|CAK97016.1| unnamed protein product [Aspergillus niger] Length = 219 Score = 244 bits (624), Expect = 4e-63, Method: Composition-based stats. Identities = 110/174 (63%), Positives = 129/174 (74%) Query: 11 ISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMM 70 S Q S S + ++T+ DQ+V WAR GSL ++FGLACCA+EMM Sbjct: 41 TSQQDQGSAPPPSTALSAERRPMNMAEHVLTTFDQIVNWARQGSLWPLSFGLACCAIEMM 100 Query: 71 QASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCA 130 SMPRYD +R G RASPRQSDVMIVAGT+TNKMA ALR+ YDQMPEPR+VISMGSCA Sbjct: 101 HVSMPRYDQDRLGIIFRASPRQSDVMIVAGTVTNKMAPALRQCYDQMPEPRWVISMGSCA 160 Query: 131 NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 NGGGYYHYSYS+VRG DRIVPVD+Y+PGCPPTAEA +YG+ LQKKI+R + Sbjct: 161 NGGGYYHYSYSIVRGVDRIVPVDVYIPGCPPTAEATLYGVFQLQKKIKRTRITR 214 >gi|195341209|ref|XP_002037203.1| GM12792 [Drosophila sechellia] gi|194131319|gb|EDW53362.1| GM12792 [Drosophila sechellia] Length = 204 Score = 244 bits (624), Expect = 4e-63, Method: Composition-based stats. Identities = 108/144 (75%), Positives = 125/144 (86%) Query: 41 TSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAG 100 +D L+ W R GSL +TFGLACCAVEMM + PRYD++R+G RASPRQ+DV+IVAG Sbjct: 56 ARLDDLLNWGRKGSLWPLTFGLACCAVEMMHIAAPRYDMDRYGVVFRASPRQADVLIVAG 115 Query: 101 TLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCP 160 TLTNKMA A R+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCP Sbjct: 116 TLTNKMAPAFRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCP 175 Query: 161 PTAEALIYGILLLQKKIRRVGNVK 184 PTAEAL+YGIL LQKK++R+ ++ Sbjct: 176 PTAEALMYGILQLQKKVKRMRTLQ 199 >gi|225712904|gb|ACO12298.1| NADH dehydrogenase iron-sulfur protein 7, mitochondrial precursor [Lepeophtheirus salmonis] Length = 211 Score = 244 bits (624), Expect = 4e-63, Method: Composition-based stats. Identities = 108/154 (70%), Positives = 127/154 (82%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP 90 + ++V +D L+ W R SL +TFGLA CAVEMM + PRYD++R+G RASP Sbjct: 53 DKKNKAEYVVARLDDLINWGRKTSLWPLTFGLAYCAVEMMHIAAPRYDMDRYGVVFRASP 112 Query: 91 RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150 RQ+DV++VAGTLTNKMA A R+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIV Sbjct: 113 RQADVILVAGTLTNKMAPAFRKVYDQMLEPRWVISMGSCANGGGYYHYSYSVVRGCDRIV 172 Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 PVDIYVPGCPPTAEAL+YGIL LQKKI+R+ NV+ Sbjct: 173 PVDIYVPGCPPTAEALMYGILQLQKKIKRMKNVQ 206 >gi|6007781|gb|AAF01037.1| NADH ubiquinone oxidoreductase PSST subunit [Lupinus luteus] Length = 213 Score = 244 bits (624), Expect = 4e-63, Method: Composition-based stats. Identities = 113/144 (78%), Positives = 123/144 (85%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 F+++ VD L+ WAR GS+ MTFGLACCAVEMM RYDL+RFG R SPRQSD MI Sbjct: 62 FVISKVDDLMNWARRGSIWPMTFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDCMI 121 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP Sbjct: 122 VAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 181 Query: 158 GCPPTAEALIYGILLLQKKIRRVG 181 GCPPTAEAL+YG+L LQKKI R Sbjct: 182 GCPPTAEALLYGLLQLQKKINRRK 205 >gi|319943349|ref|ZP_08017631.1| NADH-quinone oxidoreductase subunit B [Lautropia mirabilis ATCC 51599] gi|319743164|gb|EFV95569.1| NADH-quinone oxidoreductase subunit B [Lautropia mirabilis ATCC 51599] Length = 159 Score = 244 bits (623), Expect = 4e-63, Method: Composition-based stats. Identities = 115/151 (76%), Positives = 130/151 (86%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 + ++GF+ T+VD+L+ W RTGSL MTFGLACCAVEM+ A + RYDL+RFG R SPR Sbjct: 6 VLNEGFVTTNVDKLINWTRTGSLWAMTFGLACCAVEMIHAGVSRYDLDRFGVIFRPSPRH 65 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 SDVMIVAGTL NKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPV Sbjct: 66 SDVMIVAGTLCNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPV 125 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 DIYVPGCPPTAEALIYGI+ LQ+KIR + Sbjct: 126 DIYVPGCPPTAEALIYGIIQLQRKIRETNTI 156 >gi|147818797|emb|CAN67285.1| hypothetical protein VITISV_021597 [Vitis vinifera] Length = 209 Score = 244 bits (623), Expect = 4e-63, Method: Composition-based stats. Identities = 115/179 (64%), Positives = 132/179 (73%), Gaps = 1/179 (0%) Query: 4 TTVNQKIISGQSSCSLEKVDADFSRISSEITHK-GFLVTSVDQLVTWARTGSLMWMTFGL 62 TT+ + + S + ++ F+++ VD L+ WAR GS+ MTFGL Sbjct: 23 TTLPSLSSESAAPAPYSRAPPPSSTSPAGLSKAAEFVISKVDDLLNWARRGSIWPMTFGL 82 Query: 63 ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122 ACCAVEMM RYDL+RFG R SPRQSD MIVAGTLTNKMA ALR+VYDQMPEPR+ Sbjct: 83 ACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDCMIVAGTLTNKMAPALRKVYDQMPEPRW 142 Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181 V+SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG+L LQKKI R Sbjct: 143 VVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGLLQLQKKINRRK 201 >gi|134095030|ref|YP_001100105.1| NADH dehydrogenase subunit B [Herminiimonas arsenicoxydans] gi|218527991|sp|A4G643|NUOB_HERAR RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|133738933|emb|CAL61980.1| NADH-quinone oxidoreductase subunit B (NADH dehydrogenase I subunit B) (NDH-1 subunit B) [Herminiimonas arsenicoxydans] Length = 158 Score = 244 bits (623), Expect = 4e-63, Method: Composition-based stats. Identities = 112/151 (74%), Positives = 128/151 (84%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 + ++GF+ T+ D+L+ W RTGS+ MTFGLACCAVEMM A RYD++RFG R SPRQ Sbjct: 6 VLNEGFVTTTADKLINWTRTGSMWPMTFGLACCAVEMMHAGASRYDMDRFGVVFRPSPRQ 65 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 SDVMIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPV Sbjct: 66 SDVMIVAGTLCNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPV 125 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 D+YVPGCPPTAEAL+YGI+ LQ KIRR + Sbjct: 126 DVYVPGCPPTAEALLYGIMQLQNKIRRTNTI 156 >gi|226348821|gb|ACO50725.1| NADH dehydrogenase subunit 10 [Micromonas pusilla CCMP1545] Length = 158 Score = 244 bits (623), Expect = 4e-63, Method: Composition-based stats. Identities = 110/144 (76%), Positives = 124/144 (86%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93 + ++++ VD L+ WAR GSL MTFGLACCAVEMM RYDL+RFG R SPRQS Sbjct: 3 SQAEYILSKVDALLNWARKGSLWPMTFGLACCAVEMMHTGAARYDLDRFGMIFRPSPRQS 62 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD 153 DVMIVAGTLTNKMA ALR+VYDQMPEP++VISMGSCANGGGYYHYSY+VVRGCDRIVPVD Sbjct: 63 DVMIVAGTLTNKMAPALRKVYDQMPEPKWVISMGSCANGGGYYHYSYAVVRGCDRIVPVD 122 Query: 154 IYVPGCPPTAEALIYGILLLQKKI 177 +YVPGCPPTAEAL+YG+L LQKKI Sbjct: 123 VYVPGCPPTAEALLYGLLQLQKKI 146 >gi|254491467|ref|ZP_05104646.1| NADH-quinone oxidoreductase, B subunit subfamily [Methylophaga thiooxidans DMS010] gi|224462945|gb|EEF79215.1| NADH-quinone oxidoreductase, B subunit subfamily [Methylophaga thiooxydans DMS010] Length = 162 Score = 244 bits (623), Expect = 4e-63, Method: Composition-based stats. Identities = 117/151 (77%), Positives = 128/151 (84%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 + KG + TS D+L+ WARTGSL MTFGLACCAVEMM A RYDL+RFG R SPRQ Sbjct: 6 VLEKGVVTTSADKLINWARTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGVVFRPSPRQ 65 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 SDVMIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPV Sbjct: 66 SDVMIVAGTLVNKMAPALRKVYDQMSEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPV 125 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 DIYVPGCPPTAEAL+YGI+ LQKKI+R + Sbjct: 126 DIYVPGCPPTAEALLYGIVQLQKKIQRTNTI 156 >gi|73540665|ref|YP_295185.1| NADH dehydrogenase subunit B [Ralstonia eutropha JMP134] gi|123625484|sp|Q473U2|NUOB_RALEJ RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|72118078|gb|AAZ60341.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit [Ralstonia eutropha JMP134] Length = 160 Score = 244 bits (623), Expect = 4e-63, Method: Composition-based stats. Identities = 114/151 (75%), Positives = 128/151 (84%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 + ++GF+ T+ D+L+ W RTGSL MTFGLACCAVEMM A RYDL+RFG R SPRQ Sbjct: 6 VLNEGFVTTTADKLINWTRTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGVVFRPSPRQ 65 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 SDVMIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPV Sbjct: 66 SDVMIVAGTLCNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPV 125 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 DIYVPGCPPTAEALIYG++ LQ KI+R + Sbjct: 126 DIYVPGCPPTAEALIYGVIQLQNKIKRTNTI 156 >gi|297811291|ref|XP_002873529.1| hypothetical protein ARALYDRAFT_488014 [Arabidopsis lyrata subsp. lyrata] gi|297319366|gb|EFH49788.1| hypothetical protein ARALYDRAFT_488014 [Arabidopsis lyrata subsp. lyrata] Length = 211 Score = 244 bits (623), Expect = 4e-63, Method: Composition-based stats. Identities = 114/144 (79%), Positives = 124/144 (86%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 F+++ VD L+ WARTGS+ MTFGLACCAVEMM RYDL+RFG R SPRQSD MI Sbjct: 67 FVISKVDDLMNWARTGSIWPMTFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDCMI 126 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP Sbjct: 127 VAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 186 Query: 158 GCPPTAEALIYGILLLQKKIRRVG 181 GCPPTAEAL+YG+L LQKKI R Sbjct: 187 GCPPTAEALLYGLLQLQKKINRRK 210 >gi|209964549|ref|YP_002297464.1| NADH-quinone oxidoreductase chain B [Rhodospirillum centenum SW] gi|238065202|sp|B6ISY0|NUOB_RHOCS RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|209958015|gb|ACI98651.1| NADH-quinone oxidoreductase chain B [Rhodospirillum centenum SW] Length = 194 Score = 244 bits (623), Expect = 4e-63, Method: Composition-based stats. Identities = 123/191 (64%), Positives = 138/191 (72%), Gaps = 8/191 (4%) Query: 1 MGLTTVNQKIISGQSSC--------SLEKVDADFSRISSEITHKGFLVTSVDQLVTWART 52 MG+ + G SS DA + E+ KG+LV D L+ WART Sbjct: 1 MGVIATPPPSVQGPSSQVPSSAPIPPGPVQDAYLQAVQQEMQDKGYLVARFDALMDWART 60 Query: 53 GSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRR 112 GSL MTFGLACCAVEM+ A M RYDL+RFG PR SPRQSDVMIVAGT+ NKMA ALR+ Sbjct: 61 GSLWPMTFGLACCAVEMIHAYMARYDLDRFGVIPRPSPRQSDVMIVAGTVCNKMAPALRK 120 Query: 113 VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILL 172 VYDQM EPR+VISMGSCANGGGYYHYSYSVVRG DRIVPVDIYVPGCPPTAEAL+YG+L Sbjct: 121 VYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGVDRIVPVDIYVPGCPPTAEALVYGVLQ 180 Query: 173 LQKKIRRVGNV 183 LQKKI+ + Sbjct: 181 LQKKIKNGNRL 191 >gi|196002435|ref|XP_002111085.1| predicted protein [Trichoplax adhaerens] gi|190587036|gb|EDV27089.1| predicted protein [Trichoplax adhaerens] Length = 164 Score = 244 bits (623), Expect = 4e-63, Method: Composition-based stats. Identities = 115/146 (78%), Positives = 128/146 (87%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 F+V VD ++ WAR SL MTFGLACCA+EMMQ + PRYD++RFG RASPRQ+DVMI Sbjct: 13 FVVAKVDDVINWARRSSLWPMTFGLACCAIEMMQFAAPRYDMDRFGIVFRASPRQADVMI 72 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGTLTNKMA A R+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRI+PVDIYVP Sbjct: 73 VAGTLTNKMAPAFRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVP 132 Query: 158 GCPPTAEALIYGILLLQKKIRRVGNV 183 GCPPTAEAL+YG LLLQKKIRR +V Sbjct: 133 GCPPTAEALLYGFLLLQKKIRRSKSV 158 >gi|300703643|ref|YP_003745245.1| NADH-quinone oxidoreductase subunit B [Ralstonia solanacearum CFBP2957] gi|299071306|emb|CBJ42624.1| NADH-quinone oxidoreductase subunit B [Ralstonia solanacearum CFBP2957] Length = 160 Score = 244 bits (623), Expect = 4e-63, Method: Composition-based stats. Identities = 114/151 (75%), Positives = 128/151 (84%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 + ++GF+ T+ D+L+ W RTGSL MTFGLACCAVEMM A RYDL+RFG R SPRQ Sbjct: 6 VLNEGFVTTTADKLINWTRTGSLWPMTFGLACCAVEMMHAGASRYDLDRFGVVFRPSPRQ 65 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 SDVMIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPV Sbjct: 66 SDVMIVAGTLCNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPV 125 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 D+YVPGCPPTAEALIYG++ LQ KIRR + Sbjct: 126 DVYVPGCPPTAEALIYGVIQLQAKIRRTNTI 156 >gi|225429464|ref|XP_002277483.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 209 Score = 244 bits (623), Expect = 5e-63, Method: Composition-based stats. Identities = 115/179 (64%), Positives = 132/179 (73%), Gaps = 1/179 (0%) Query: 4 TTVNQKIISGQSSCSLEKVDADFSRISSEITHK-GFLVTSVDQLVTWARTGSLMWMTFGL 62 TT+ + + S + ++ F+++ VD L+ WAR GS+ MTFGL Sbjct: 23 TTLPSLSSESAAPAPYSRAPPPSSTSPAGLSKAAEFVISKVDDLLNWARRGSIWPMTFGL 82 Query: 63 ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122 ACCAVEMM RYDL+RFG R SPRQSD MIVAGTLTNKMA ALR+VYDQMPEPR+ Sbjct: 83 ACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDCMIVAGTLTNKMAPALRKVYDQMPEPRW 142 Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181 V+SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG+L LQKKI R Sbjct: 143 VVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGLLQLQKKINRRK 201 >gi|242765651|ref|XP_002341018.1| NADH-ubiquinone oxidoreductase subunit B, putative [Talaromyces stipitatus ATCC 10500] gi|218724214|gb|EED23631.1| NADH-ubiquinone oxidoreductase subunit B, putative [Talaromyces stipitatus ATCC 10500] Length = 226 Score = 244 bits (623), Expect = 5e-63, Method: Composition-based stats. Identities = 117/186 (62%), Positives = 136/186 (73%), Gaps = 2/186 (1%) Query: 1 MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWM 58 M + + ++ S + KV + S E + +T++DQ+ WAR SL M Sbjct: 36 MPASAIERQSEPSSSLTASGKVRREVPLPSQEKKEGAMQYALTTLDQIANWARQSSLWPM 95 Query: 59 TFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMP 118 TFGLACCAVEMM S PRYD +R G RASPRQSDVMIVAGTLTNKMA ALR+VYDQMP Sbjct: 96 TFGLACCAVEMMHLSTPRYDQDRLGIIFRASPRQSDVMIVAGTLTNKMAPALRQVYDQMP 155 Query: 119 EPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 +PR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT+EAL+YGI LQKK+R Sbjct: 156 DPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTSEALMYGIFQLQKKMR 215 Query: 179 RVGNVK 184 + Sbjct: 216 HTKITR 221 >gi|169774064|ref|XP_001821500.1| NADH-ubiquinone oxidoreductase subunit [Aspergillus oryzae RIB40] gi|238508860|ref|XP_002385611.1| NADH-ubiquinone oxidoreductase subunit B, putative [Aspergillus flavus NRRL3357] gi|83769362|dbj|BAE59498.1| unnamed protein product [Aspergillus oryzae] gi|220688358|gb|EED44712.1| NADH-ubiquinone oxidoreductase subunit B, putative [Aspergillus flavus NRRL3357] Length = 228 Score = 244 bits (623), Expect = 5e-63, Method: Composition-based stats. Identities = 117/183 (63%), Positives = 137/183 (74%), Gaps = 2/183 (1%) Query: 4 TTVNQKIISGQSSCSLEKVDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFG 61 T + K SGQ + K+ + S E +++T++DQ+ WAR SL MTFG Sbjct: 41 TALEHKGHSGQPLTASGKIRKEVPLPSQEKKEGAMQYVLTTLDQVANWARQSSLWPMTFG 100 Query: 62 LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPR 121 LACCAVEMM S PRYD +R G RASPRQSDVMIVAGTLTNKMA ALR+VYDQMP+PR Sbjct: 101 LACCAVEMMHLSTPRYDQDRLGIIFRASPRQSDVMIVAGTLTNKMAPALRQVYDQMPDPR 160 Query: 122 YVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181 +V+SMGSCANGGGYYHYSYSVVRGCDRIVPVD+YVPGCPPT+EAL+YGI LQKK+R Sbjct: 161 WVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTSEALMYGIFQLQKKMRHTR 220 Query: 182 NVK 184 + Sbjct: 221 ITR 223 >gi|254247658|ref|ZP_04940979.1| NADH dehydrogenase beta subunit [Burkholderia cenocepacia PC184] gi|124872434|gb|EAY64150.1| NADH dehydrogenase beta subunit [Burkholderia cenocepacia PC184] Length = 173 Score = 244 bits (622), Expect = 5e-63, Method: Composition-based stats. Identities = 114/151 (75%), Positives = 127/151 (84%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 + +GF+ T+ D+L+ W RTGSL MTFGLACCAVEMM A RYDL+RFG R SPRQ Sbjct: 20 VLKEGFVTTTADKLINWTRTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGVVFRPSPRQ 79 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 SDVMIVAGTL NKMA ALRRVYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPV Sbjct: 80 SDVMIVAGTLCNKMAPALRRVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPV 139 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 D+YVPGCPPTAEAL+YG++ LQ KIRR + Sbjct: 140 DVYVPGCPPTAEALVYGVIQLQAKIRRTNTI 170 >gi|94309873|ref|YP_583083.1| NADH dehydrogenase subunit B [Cupriavidus metallidurans CH34] gi|113867071|ref|YP_725560.1| NADH dehydrogenase subunit B [Ralstonia eutropha H16] gi|194289160|ref|YP_002005067.1| NADH dehydrogenase subunit b [Cupriavidus taiwanensis LMG 19424] gi|122947021|sp|Q0KCS9|NUOB_RALEH RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|218527987|sp|B3R3W8|NUOB_CUPTR RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|218528006|sp|Q1LPW2|NUOB_RALME RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|93353725|gb|ABF07814.1| NADH dehydrogenase chain B [Cupriavidus metallidurans CH34] gi|113525847|emb|CAJ92192.1| NADH dehydrogenase chain B [Ralstonia eutropha H16] gi|193222995|emb|CAQ69000.1| NADH:ubiquinone oxidoreductase complex I, chain B [Cupriavidus taiwanensis LMG 19424] Length = 160 Score = 244 bits (622), Expect = 5e-63, Method: Composition-based stats. Identities = 113/151 (74%), Positives = 128/151 (84%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 + ++GF+ T+ D+L+ W RTGSL MTFGLACCAVEMM A RYD++RFG R SPRQ Sbjct: 6 VLNEGFVTTTADKLINWTRTGSLWPMTFGLACCAVEMMHAGAARYDMDRFGVIFRPSPRQ 65 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 SDVMIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPV Sbjct: 66 SDVMIVAGTLCNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPV 125 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 DIYVPGCPPTAEALIYG++ LQ KI+R + Sbjct: 126 DIYVPGCPPTAEALIYGVIQLQNKIKRTNTI 156 >gi|195574757|ref|XP_002105350.1| GD21440 [Drosophila simulans] gi|194201277|gb|EDX14853.1| GD21440 [Drosophila simulans] Length = 212 Score = 244 bits (622), Expect = 6e-63, Method: Composition-based stats. Identities = 108/144 (75%), Positives = 125/144 (86%) Query: 41 TSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAG 100 +D L+ W R GSL +TFGLACCAVEMM + PRYD++R+G RASPRQ+DV+IVAG Sbjct: 64 ARLDDLLNWGRKGSLWPLTFGLACCAVEMMHIAAPRYDMDRYGVVFRASPRQADVLIVAG 123 Query: 101 TLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCP 160 TLTNKMA A R+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCP Sbjct: 124 TLTNKMAPAFRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCP 183 Query: 161 PTAEALIYGILLLQKKIRRVGNVK 184 PTAEAL+YGIL LQKK++R+ ++ Sbjct: 184 PTAEALMYGILQLQKKVKRMRTLQ 207 >gi|88608136|ref|YP_506317.1| NADH dehydrogenase I, B subunit [Neorickettsia sennetsu str. Miyayama] gi|123491986|sp|Q2GDX9|NUOB_NEOSM RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|88600305|gb|ABD45773.1| NADH dehydrogenase I, B subunit [Neorickettsia sennetsu str. Miyayama] Length = 167 Score = 244 bits (622), Expect = 6e-63, Method: Composition-based stats. Identities = 116/152 (76%), Positives = 129/152 (84%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP 90 S ++ G+LV +D L+ WAR+GSL MTFGLACCAVEMM + RYD++RFG R SP Sbjct: 12 SNVSSDGYLVAKLDDLINWARSGSLWPMTFGLACCAVEMMHFTASRYDMDRFGMIFRPSP 71 Query: 91 RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150 RQSDVMIVAGTLTNKMA ALRRVYDQM EP+YVISMGSCANGGGYYHYSYSVVRGCDRIV Sbjct: 72 RQSDVMIVAGTLTNKMAPALRRVYDQMAEPKYVISMGSCANGGGYYHYSYSVVRGCDRIV 131 Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182 PVD+YVPGCPPTAEAL+YG+L LQKKI R N Sbjct: 132 PVDVYVPGCPPTAEALLYGVLCLQKKINRQRN 163 >gi|206560702|ref|YP_002231467.1| NADH dehydrogenase subunit B [Burkholderia cenocepacia J2315] gi|198036744|emb|CAR52644.1| NADH dehydrogenase I chain B [Burkholderia cenocepacia J2315] Length = 173 Score = 244 bits (622), Expect = 6e-63, Method: Composition-based stats. Identities = 114/151 (75%), Positives = 127/151 (84%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 + +GF+ T+ D+L+ W RTGSL MTFGLACCAVEMM A RYDL+RFG R SPRQ Sbjct: 20 VLKEGFVTTTADKLINWTRTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGVVFRPSPRQ 79 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 SDVMIVAGTL NKMA ALRRVYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPV Sbjct: 80 SDVMIVAGTLCNKMAPALRRVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPV 139 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 D+YVPGCPPTAEAL+YG++ LQ KIRR + Sbjct: 140 DVYVPGCPPTAEALVYGVIQLQAKIRRTNTI 170 >gi|312796901|ref|YP_004029823.1| NADH-quinone oxidoreductase chain B [Burkholderia rhizoxinica HKI 454] gi|312168676|emb|CBW75679.1| NADH-quinone oxidoreductase chain B (EC 1.6.5.3) [Burkholderia rhizoxinica HKI 454] Length = 173 Score = 244 bits (622), Expect = 6e-63, Method: Composition-based stats. Identities = 113/151 (74%), Positives = 127/151 (84%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 + +GF+ T+ D+L+ W RTGSL MTFGLACCAVEMM A RYDL+RFG R SPRQ Sbjct: 20 VLKEGFVTTTADKLINWTRTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGVVFRPSPRQ 79 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 SDVMIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPV Sbjct: 80 SDVMIVAGTLCNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPV 139 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 D+YVPGCPPTAEAL+YG++ LQ KIRR + Sbjct: 140 DVYVPGCPPTAEALVYGVIQLQAKIRRTNTI 170 >gi|52842986|ref|YP_096785.1| NADH dehydrogenase subunit B [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|54295617|ref|YP_128032.1| NADH dehydrogenase subunit B [Legionella pneumophila str. Lens] gi|54298771|ref|YP_125140.1| NADH dehydrogenase subunit B [Legionella pneumophila str. Paris] gi|296108431|ref|YP_003620132.1| NADH dehydrogenase I chain B [Legionella pneumophila 2300/99 Alcoy] gi|81376641|sp|Q5ZRT9|NUOB_LEGPH RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|81601171|sp|Q5WT21|NUOB_LEGPL RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|81601638|sp|Q5X1A8|NUOB_LEGPA RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|52630097|gb|AAU28838.1| NADH dehydrogenase I, B subunit [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|53752556|emb|CAH13988.1| NADH dehydrogenase I chain B [Legionella pneumophila str. Paris] gi|53755449|emb|CAH16945.1| NADH dehydrogenase I chain B [Legionella pneumophila str. Lens] gi|295650333|gb|ADG26180.1| NADH dehydrogenase I chain B [Legionella pneumophila 2300/99 Alcoy] Length = 158 Score = 243 bits (621), Expect = 7e-63, Method: Composition-based stats. Identities = 116/149 (77%), Positives = 130/149 (87%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP 90 +E+ KGF +T+V++LV WAR+GS+ MTFGLACCAVEMM RYDL+RFG R SP Sbjct: 4 AELEKKGFELTTVEKLVGWARSGSMWPMTFGLACCAVEMMHVGAARYDLDRFGIIFRPSP 63 Query: 91 RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150 RQSDVMIVAGTL NKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRIV Sbjct: 64 RQSDVMIVAGTLCNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIV 123 Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRR 179 PVD+YVPGCPPTAEAL+YGI+ LQ KIRR Sbjct: 124 PVDVYVPGCPPTAEALLYGIIQLQNKIRR 152 >gi|1171866|sp|P42027|NDUS7_BRAOL RecName: Full=NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial; AltName: Full=Complex I-20kD; Short=CI-20kD; Flags: Precursor gi|562282|emb|CAA57725.1| PSST subunit of NADH: ubiquinone oxidoreductase [Brassica oleracea] Length = 215 Score = 243 bits (621), Expect = 7e-63, Method: Composition-based stats. Identities = 114/170 (67%), Positives = 129/170 (75%) Query: 12 SGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQ 71 + +S + + + F+++ VD L+ WAR GS+ MTFGLACCAVEMM Sbjct: 38 TTPTSYTRPGPPSTSAPPPGLSKTAEFVISKVDDLMNWARRGSIWPMTFGLACCAVEMMH 97 Query: 72 ASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCAN 131 RYDL+RFG R SPRQSD MIVAGTLTNKMA ALR+VYDQMPEPR+VISMGSCAN Sbjct: 98 TGAARYDLDRFGIIFRPSPRQSDCMIVAGTLTNKMAPALRKVYDQMPEPRWVISMGSCAN 157 Query: 132 GGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181 GGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG+L LQKKI R Sbjct: 158 GGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGLLQLQKKINRRK 207 >gi|9652190|gb|AAF91434.1| NADH-ubiquinone oxidoreductase subunit PSST [Lupinus luteus] Length = 192 Score = 243 bits (621), Expect = 7e-63, Method: Composition-based stats. Identities = 113/144 (78%), Positives = 123/144 (85%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 F+++ VD L+ WAR GS+ MTFGLACCAVEMM RYDL+RFG R SPRQSD MI Sbjct: 41 FVISKVDDLMNWARRGSIWPMTFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDCMI 100 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP Sbjct: 101 VAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 160 Query: 158 GCPPTAEALIYGILLLQKKIRRVG 181 GCPPTAEAL+YG+L LQKKI R Sbjct: 161 GCPPTAEALLYGLLQLQKKINRRK 184 >gi|312383258|gb|EFR28415.1| hypothetical protein AND_03673 [Anopheles darlingi] Length = 210 Score = 243 bits (621), Expect = 7e-63, Method: Composition-based stats. Identities = 114/187 (60%), Positives = 140/187 (74%), Gaps = 4/187 (2%) Query: 2 GLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKG----FLVTSVDQLVTWARTGSLMW 57 G V + S + +EK + S T + + V +D ++ W R GS+ Sbjct: 19 GTVQVLPSVRSKATLPVVEKDKPEKLPYSPFGTKQSSWADWTVARLDDVLNWGRKGSIWP 78 Query: 58 MTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQM 117 +TFGLACCAVEMM + PRYD++RFG RASPRQ+DV+IVAGTLTNKMA ALR+VYDQM Sbjct: 79 LTFGLACCAVEMMHIAAPRYDMDRFGVVFRASPRQADVIIVAGTLTNKMAPALRKVYDQM 138 Query: 118 PEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 PEPR+VISMGSCANGGGYYHYSYSVVRGCDRI+PVDIYVPGCPPTAEAL+YG+L LQKK+ Sbjct: 139 PEPRWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALLYGVLQLQKKV 198 Query: 178 RRVGNVK 184 +R+ ++ Sbjct: 199 KRMKTLQ 205 >gi|254468178|ref|ZP_05081584.1| NADH-quinone oxidoreductase, b subunit [beta proteobacterium KB13] gi|207086988|gb|EDZ64271.1| NADH-quinone oxidoreductase, b subunit [beta proteobacterium KB13] Length = 158 Score = 243 bits (621), Expect = 8e-63, Method: Composition-based stats. Identities = 109/151 (72%), Positives = 128/151 (84%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 + KGF+ T++D L+ + RT S+ MTFGLACCAVEMM A RYDL+RFG R SPRQ Sbjct: 6 LLEKGFITTNLDTLINYTRTNSMWPMTFGLACCAVEMMHAGASRYDLDRFGMVFRPSPRQ 65 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 SD+MIVAGTL NKMA ALR+VYDQMP+P++VISMGSCANGGGYYHYSYSVVRGCDRIVPV Sbjct: 66 SDLMIVAGTLVNKMAPALRKVYDQMPDPKWVISMGSCANGGGYYHYSYSVVRGCDRIVPV 125 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 D+YVPGCPPTAEAL++G+L LQKKI+R + Sbjct: 126 DVYVPGCPPTAEALMFGLLQLQKKIKRTNTI 156 >gi|168032288|ref|XP_001768651.1| predicted protein [Physcomitrella patens subsp. patens] gi|162680150|gb|EDQ66589.1| predicted protein [Physcomitrella patens subsp. patens] Length = 201 Score = 243 bits (621), Expect = 8e-63, Method: Composition-based stats. Identities = 114/146 (78%), Positives = 126/146 (86%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 F+++ VD L+ WARTGS+ MTFGLACCAVEMM RYDL+RFG R SPRQSD MI Sbjct: 50 FVLSKVDALMNWARTGSIWPMTFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDCMI 109 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGTLTNKMA ALR+VYDQMPEPR+V+SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP Sbjct: 110 VAGTLTNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 169 Query: 158 GCPPTAEALIYGILLLQKKIRRVGNV 183 GCPPTAEAL+YG+L LQKKI R +V Sbjct: 170 GCPPTAEALLYGLLQLQKKINRRKDV 195 >gi|254251862|ref|ZP_04945180.1| NADH dehydrogenase beta subunit [Burkholderia dolosa AUO158] gi|124894471|gb|EAY68351.1| NADH dehydrogenase beta subunit [Burkholderia dolosa AUO158] Length = 173 Score = 243 bits (621), Expect = 8e-63, Method: Composition-based stats. Identities = 114/151 (75%), Positives = 127/151 (84%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 + +GF+ T+ D+L+ W RTGSL MTFGLACCAVEMM A RYDL+RFG R SPRQ Sbjct: 20 VLKEGFVTTTADKLINWTRTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGVVFRPSPRQ 79 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 SDVMIVAGTL NKMA ALRRVYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPV Sbjct: 80 SDVMIVAGTLCNKMAPALRRVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPV 139 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 D+YVPGCPPTAEAL+YG++ LQ KIRR + Sbjct: 140 DVYVPGCPPTAEALVYGVIQLQAKIRRTNTI 170 >gi|320586540|gb|EFW99210.1| NADH-ubiquinone oxidoreductase subunit [Grosmannia clavigera kw1407] Length = 243 Score = 243 bits (621), Expect = 8e-63, Method: Composition-based stats. Identities = 112/178 (62%), Positives = 135/178 (75%), Gaps = 3/178 (1%) Query: 10 IISGQSSCSLEKVDADFSRISSEITHKG---FLVTSVDQLVTWARTGSLMWMTFGLACCA 66 + + S+ + + + ++S+ K + +T++D + W R GS MTFGLACCA Sbjct: 61 VAAPHSATGIARRERKEVPLASQEGTKSLVQYALTTLDIIANWGRQGSFWPMTFGLACCA 120 Query: 67 VEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISM 126 VEMM S PRYD +RFG RASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPR+VISM Sbjct: 121 VEMMHLSTPRYDQDRFGIIFRASPRQSDVMIVAGTLTNKMAPALRQVYDQMPEPRWVISM 180 Query: 127 GSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 GSCANGGGYYHYSYSVVRGCDRIVPVD+YVPGCPPT+EAL+YGI LQ+K+R + Sbjct: 181 GSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTSEALMYGIFQLQRKMRNTRTSR 238 >gi|224824822|ref|ZP_03697929.1| NADH-quinone oxidoreductase, B subunit [Lutiella nitroferrum 2002] gi|224603315|gb|EEG09491.1| NADH-quinone oxidoreductase, B subunit [Lutiella nitroferrum 2002] Length = 158 Score = 243 bits (621), Expect = 8e-63, Method: Composition-based stats. Identities = 113/151 (74%), Positives = 127/151 (84%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 I KGF+ T+ D+L+ + RTGSL MTFGLACCAVEMM A RYDL+RFG R SPRQ Sbjct: 6 ILEKGFITTTADKLINYTRTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGVVFRPSPRQ 65 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 SD+MIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPV Sbjct: 66 SDLMIVAGTLCNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPV 125 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 D+YVPGCPPTAEAL+YGI+ LQ KI+R + Sbjct: 126 DVYVPGCPPTAEALLYGIIQLQNKIKRTNTI 156 >gi|145256397|ref|XP_001401369.1| NADH-ubiquinone oxidoreductase subunit [Aspergillus niger CBS 513.88] gi|134058270|emb|CAK38461.1| unnamed protein product [Aspergillus niger] Length = 232 Score = 243 bits (621), Expect = 8e-63, Method: Composition-based stats. Identities = 118/183 (64%), Positives = 139/183 (75%), Gaps = 2/183 (1%) Query: 4 TTVNQKIISGQSSCSLEKVDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFG 61 T + Q+ SGQ+ + KV + S E +++T++DQ+ WAR SL MTFG Sbjct: 45 TAIEQRGQSGQALTASGKVRKEVPLPSQEKKEGAMQYVLTTLDQVANWARQSSLWPMTFG 104 Query: 62 LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPR 121 LACCAVEMM S PRYD +R G RASPRQSDVMIVAGTLTNKMA ALR+VYDQMP+PR Sbjct: 105 LACCAVEMMHLSTPRYDQDRLGIIFRASPRQSDVMIVAGTLTNKMAPALRQVYDQMPDPR 164 Query: 122 YVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181 +V+SMGSCANGGGYYHYSYSVVRGCDRIVPVD+YVPGCPPT+EAL+YGI LQKK+R Sbjct: 165 WVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTSEALMYGIFQLQKKMRHTR 224 Query: 182 NVK 184 + Sbjct: 225 ITR 227 >gi|217970157|ref|YP_002355391.1| NADH dehydrogenase subunit B [Thauera sp. MZ1T] gi|217507484|gb|ACK54495.1| NADH-quinone oxidoreductase, B subunit [Thauera sp. MZ1T] Length = 158 Score = 243 bits (620), Expect = 9e-63, Method: Composition-based stats. Identities = 113/149 (75%), Positives = 126/149 (84%) Query: 35 HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSD 94 +GF+ TS+D ++ W RTGSL MTFGLACCAVEM+ A RYDL+RFG R SPRQSD Sbjct: 8 REGFVTTSLDAVINWTRTGSLWPMTFGLACCAVEMIHAGCSRYDLDRFGVVFRPSPRQSD 67 Query: 95 VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154 +MIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVD+ Sbjct: 68 LMIVAGTLCNKMAPALRKVYDQMSEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDV 127 Query: 155 YVPGCPPTAEALIYGILLLQKKIRRVGNV 183 YVPGCPPTAEALIYGIL LQ KI+R + Sbjct: 128 YVPGCPPTAEALIYGILQLQNKIKRTNTI 156 >gi|148244390|ref|YP_001219084.1| NADH dehydrogenase I chain B [Candidatus Vesicomyosocius okutanii HA] gi|218528012|sp|A5CXF8|NUOB_VESOH RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|146326217|dbj|BAF61360.1| NADH dehydrogenase I chain B [Candidatus Vesicomyosocius okutanii HA] Length = 159 Score = 243 bits (620), Expect = 9e-63, Method: Composition-based stats. Identities = 112/151 (74%), Positives = 131/151 (86%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 + +GF+ S+D+++ WARTGSL MTFGLACCAVEMM+A RYDL+RFG R +PRQ Sbjct: 6 LIKQGFVTMSLDRVINWARTGSLWPMTFGLACCAVEMMEAGSSRYDLDRFGIVFRPTPRQ 65 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 SD+MIVAGTLTNKMA ALR+VYDQMPEP++VISMGSCANGGGYYHYSY+V+RGCDRIVPV Sbjct: 66 SDLMIVAGTLTNKMAPALRKVYDQMPEPKWVISMGSCANGGGYYHYSYAVIRGCDRIVPV 125 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 DIYVPGCPPTAEAL+YGI+ LQ KIRR + Sbjct: 126 DIYVPGCPPTAEALLYGIMQLQDKIRRTNTI 156 >gi|323452394|gb|EGB08268.1| NADH dehydrogenase subunit 10 [Aureococcus anophagefferens] Length = 162 Score = 243 bits (620), Expect = 9e-63, Method: Composition-based stats. Identities = 112/146 (76%), Positives = 129/146 (88%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 F+VT VD+LV WAR GS+ MTFGLACCAVEMM ++ RYD+ERFG RASPRQSDVMI Sbjct: 11 FMVTKVDELVNWARKGSIWPMTFGLACCAVEMMHSATARYDMERFGMVFRASPRQSDVMI 70 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGTLTNKMA ALR+VYDQMPEPR+V+SMGSCANGGGYYHYSY+VVRG DRIVPVDIYVP Sbjct: 71 VAGTLTNKMAPALRKVYDQMPEPRWVLSMGSCANGGGYYHYSYAVVRGVDRIVPVDIYVP 130 Query: 158 GCPPTAEALIYGILLLQKKIRRVGNV 183 GCPPTAEAL+YG++ LQKK++ ++ Sbjct: 131 GCPPTAEALLYGLIQLQKKVKSNRSL 156 >gi|145589233|ref|YP_001155830.1| NADH-quinone oxidoreductase, B subunit [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|171463527|ref|YP_001797640.1| NADH-quinone oxidoreductase, B subunit [Polynucleobacter necessarius subsp. necessarius STIR1] gi|218528004|sp|B1XUJ9|NUOB_POLNS RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|218528005|sp|A4SXQ2|NUOB_POLSQ RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|145047639|gb|ABP34266.1| NADH dehydrogenase subunit B [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|171193065|gb|ACB44026.1| NADH-quinone oxidoreductase, B subunit [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 160 Score = 243 bits (620), Expect = 9e-63, Method: Composition-based stats. Identities = 114/151 (75%), Positives = 125/151 (82%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 + +GF+ T+ DQL+ W R GSL MTFGLACCAVEMM A RYDL+RFG R SPRQ Sbjct: 6 VLKEGFVTTTADQLINWTRNGSLWPMTFGLACCAVEMMHAGASRYDLDRFGVVFRPSPRQ 65 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 SD+MIVAGTL NKMA ALR+VYDQMPEPR+VISMGSCANGGGYYH SYSVVRGCDRIVPV Sbjct: 66 SDLMIVAGTLCNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHNSYSVVRGCDRIVPV 125 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 DIYVPGCPPTAEALIYGI+ LQ KI R + Sbjct: 126 DIYVPGCPPTAEALIYGIIQLQSKIARTSTI 156 >gi|332526748|ref|ZP_08402850.1| NADH dehydrogenase subunit B [Rubrivivax benzoatilyticus JA2] gi|332111151|gb|EGJ11183.1| NADH dehydrogenase subunit B [Rubrivivax benzoatilyticus JA2] Length = 158 Score = 243 bits (620), Expect = 9e-63, Method: Composition-based stats. Identities = 111/151 (73%), Positives = 129/151 (85%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 + +GF+ TSVD+L+ W++TGSL MTFGLACCA+EMM A RYD++RFG R SPRQ Sbjct: 6 VIKEGFVTTSVDKLINWSKTGSLWPMTFGLACCAIEMMHAGAARYDMDRFGMLFRPSPRQ 65 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 SD+MIVAGTL NKMA ALR+VYDQM EPR+V+SMGSCANGGGYYHYSYSVVRGCDRIVPV Sbjct: 66 SDLMIVAGTLCNKMAPALRKVYDQMAEPRWVLSMGSCANGGGYYHYSYSVVRGCDRIVPV 125 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 D+YVPGCPPTAEAL+YGI+ LQ KIRR + Sbjct: 126 DVYVPGCPPTAEALLYGIMQLQSKIRRENTI 156 >gi|253996972|ref|YP_003049036.1| NADH dehydrogenase subunit B [Methylotenera mobilis JLW8] gi|253983651|gb|ACT48509.1| NADH-quinone oxidoreductase, B subunit [Methylotenera mobilis JLW8] Length = 158 Score = 243 bits (620), Expect = 9e-63, Method: Composition-based stats. Identities = 111/151 (73%), Positives = 127/151 (84%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 + KGF+ T++D ++ + RTGSL MTFGLACCAVEMM A RYDL+RFG R SPRQ Sbjct: 6 VLEKGFVTTTLDTVINYTRTGSLWPMTFGLACCAVEMMHAGASRYDLDRFGIVFRPSPRQ 65 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 SDVMIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSY+VVRGCDRIVPV Sbjct: 66 SDVMIVAGTLVNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYAVVRGCDRIVPV 125 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 D+YVPGCPPTAEAL+YGI+ LQ KI+R + Sbjct: 126 DVYVPGCPPTAEALLYGIIQLQNKIKRTNTI 156 >gi|77166022|ref|YP_344547.1| NADH dehydrogenase subunit B [Nitrosococcus oceani ATCC 19707] gi|254436391|ref|ZP_05049897.1| NADH-quinone oxidoreductase, B subunit subfamily [Nitrosococcus oceani AFC27] gi|300113266|ref|YP_003759841.1| NADH-quinone oxidoreductase subunit B [Nitrosococcus watsonii C-113] gi|123593538|sp|Q3J829|NUOB2_NITOC RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName: Full=NADH dehydrogenase I subunit B 2; AltName: Full=NDH-1 subunit B 2 gi|76884336|gb|ABA59017.1| NADH dehydrogenase subunit B [Nitrosococcus oceani ATCC 19707] gi|207088081|gb|EDZ65354.1| NADH-quinone oxidoreductase, B subunit subfamily [Nitrosococcus oceani AFC27] gi|299539203|gb|ADJ27520.1| NADH-quinone oxidoreductase, B subunit [Nitrosococcus watsonii C-113] Length = 158 Score = 243 bits (620), Expect = 9e-63, Method: Composition-based stats. Identities = 113/151 (74%), Positives = 127/151 (84%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 + +G + T+ D+L+ WARTGSL MTFGLACCAVEMM A RYD++RFG R SPRQ Sbjct: 6 VLERGVVTTTADKLINWARTGSLWPMTFGLACCAVEMMHAGASRYDMDRFGVIFRPSPRQ 65 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 SDVMIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPV Sbjct: 66 SDVMIVAGTLVNKMAPALRKVYDQMSEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPV 125 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 DIYVPGCPPTAEAL+YGI+ LQ KI+R + Sbjct: 126 DIYVPGCPPTAEALLYGIIQLQNKIKRNYTI 156 >gi|195503274|ref|XP_002098583.1| GE23857 [Drosophila yakuba] gi|194184684|gb|EDW98295.1| GE23857 [Drosophila yakuba] Length = 212 Score = 243 bits (620), Expect = 1e-62, Method: Composition-based stats. Identities = 108/144 (75%), Positives = 125/144 (86%) Query: 41 TSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAG 100 +D L+ W R GSL +TFGLACCAVEMM + PRYD++R+G RASPRQ+DV+IVAG Sbjct: 64 ARLDDLLNWGRKGSLWPLTFGLACCAVEMMHIAAPRYDMDRYGVVFRASPRQADVLIVAG 123 Query: 101 TLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCP 160 TLTNKMA A R+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCP Sbjct: 124 TLTNKMAPAFRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCP 183 Query: 161 PTAEALIYGILLLQKKIRRVGNVK 184 PTAEAL+YGIL LQKK++R+ ++ Sbjct: 184 PTAEALMYGILQLQKKVKRMRTLQ 207 >gi|195626816|gb|ACG35238.1| NADH-ubiquinone oxidoreductase 20 kDa subunit [Zea mays] Length = 200 Score = 243 bits (620), Expect = 1e-62, Method: Composition-based stats. Identities = 114/144 (79%), Positives = 123/144 (85%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 F+V+ VD L+ WAR GS+ MTFGLACCAVEMM A RYD +RFG R SPRQSD MI Sbjct: 49 FVVSKVDDLMNWARKGSIWPMTFGLACCAVEMMHAGASRYDFDRFGVIFRPSPRQSDCMI 108 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP Sbjct: 109 VAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 168 Query: 158 GCPPTAEALIYGILLLQKKIRRVG 181 GCPPTAEAL+YG+L LQKKI R Sbjct: 169 GCPPTAEALLYGVLQLQKKINRRK 192 >gi|212721050|ref|NP_001131270.1| hypothetical protein LOC100192583 [Zea mays] gi|194691040|gb|ACF79604.1| unknown [Zea mays] gi|195641534|gb|ACG40235.1| NADH-ubiquinone oxidoreductase 20 kDa subunit [Zea mays] Length = 202 Score = 243 bits (620), Expect = 1e-62, Method: Composition-based stats. Identities = 114/144 (79%), Positives = 123/144 (85%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 F+V+ VD L+ WAR GS+ MTFGLACCAVEMM A RYD +RFG R SPRQSD MI Sbjct: 51 FVVSKVDDLMNWARKGSIWPMTFGLACCAVEMMHAGASRYDFDRFGVIFRPSPRQSDCMI 110 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP Sbjct: 111 VAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 170 Query: 158 GCPPTAEALIYGILLLQKKIRRVG 181 GCPPTAEAL+YG+L LQKKI R Sbjct: 171 GCPPTAEALLYGVLQLQKKINRRK 194 >gi|297538955|ref|YP_003674724.1| NADH-quinone oxidoreductase subunit B [Methylotenera sp. 301] gi|297258302|gb|ADI30147.1| NADH-quinone oxidoreductase, B subunit [Methylotenera sp. 301] Length = 158 Score = 243 bits (620), Expect = 1e-62, Method: Composition-based stats. Identities = 111/151 (73%), Positives = 127/151 (84%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 I KGF+ T++D ++ + RTGS+ MTFGLACCAVEMM A RYDL+RFG R SPRQ Sbjct: 6 ILEKGFVTTTLDTVINYTRTGSMWPMTFGLACCAVEMMHAGASRYDLDRFGIVFRGSPRQ 65 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 SDVMIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSY+VVRGCDRIVPV Sbjct: 66 SDVMIVAGTLVNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYAVVRGCDRIVPV 125 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 D+YVPGCPPTAEAL+YGI+ LQ KI+R + Sbjct: 126 DVYVPGCPPTAEALLYGIIQLQNKIKRTNTI 156 >gi|118602276|ref|YP_903491.1| NADH-quinone oxidoreductase, B subunit [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|218528022|sp|A1AVR3|NUOB_RUTMC RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|118567215|gb|ABL02020.1| NADH dehydrogenase subunit B [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 159 Score = 243 bits (620), Expect = 1e-62, Method: Composition-based stats. Identities = 113/151 (74%), Positives = 130/151 (86%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 + +GF+ TS++ ++ WARTGSL MTFGLACCAVEMM+A RYDL+RFG R +PRQ Sbjct: 6 LMKQGFVTTSLNNVINWARTGSLWPMTFGLACCAVEMMEAGSSRYDLDRFGIVFRPTPRQ 65 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 SD+MIVAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSY+VVRGCDRIVPV Sbjct: 66 SDLMIVAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYAVVRGCDRIVPV 125 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 DIYVPGCPPTAEAL+YGI+ LQ KIR + Sbjct: 126 DIYVPGCPPTAEALLYGIIQLQDKIRSTNTI 156 >gi|226939457|ref|YP_002794530.1| NuoB2 [Laribacter hongkongensis HLHK9] gi|254767794|sp|C1DCA4|NUOB_LARHH RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|226714383|gb|ACO73521.1| NuoB2 [Laribacter hongkongensis HLHK9] Length = 158 Score = 242 bits (619), Expect = 1e-62, Method: Composition-based stats. Identities = 112/151 (74%), Positives = 127/151 (84%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 + KGF+ TS D+++ W RTGSL MTFGLACCAVEMM A RYDL+RFG R SPRQ Sbjct: 6 VLEKGFITTSADKVLNWTRTGSLWPMTFGLACCAVEMMHAGASRYDLDRFGIVFRPSPRQ 65 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 SD+MIVAGTL NKMA ALR+VYDQM EPR+V+SMGSCANGGGYYHYSYSVVRGCDRIVPV Sbjct: 66 SDLMIVAGTLCNKMAPALRKVYDQMAEPRWVLSMGSCANGGGYYHYSYSVVRGCDRIVPV 125 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 D+YVPGCPPTAEAL+YGI+ LQ KI+R + Sbjct: 126 DVYVPGCPPTAEALLYGIIQLQNKIKRTCTI 156 >gi|34496397|ref|NP_900612.1| NADH dehydrogenase subunit B [Chromobacterium violaceum ATCC 12472] gi|81656636|sp|Q7NZI0|NUOB1_CHRVO RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName: Full=NADH dehydrogenase I subunit B 1; AltName: Full=NDH-1 subunit B 1 gi|34102250|gb|AAQ58616.1| NADH-ubiquinone oxidoreductase, chain B [Chromobacterium violaceum ATCC 12472] Length = 158 Score = 242 bits (619), Expect = 1e-62, Method: Composition-based stats. Identities = 113/151 (74%), Positives = 127/151 (84%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 I KGF+ T+ D+L+ + RTGSL MTFGLACCAVEMM A RYDL+RFG R SPRQ Sbjct: 6 ILEKGFVTTTADKLINYTRTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGVVFRPSPRQ 65 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 SD+MIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPV Sbjct: 66 SDLMIVAGTLCNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPV 125 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 D+YVPGCPPTAEAL+YGI+ LQ KI+R + Sbjct: 126 DVYVPGCPPTAEALLYGIIQLQNKIKRTNTI 156 >gi|124266597|ref|YP_001020601.1| NADH dehydrogenase subunit B [Methylibium petroleiphilum PM1] gi|218527995|sp|A2SFM7|NUOB_METPP RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|124259372|gb|ABM94366.1| NADH dehydrogenase [Methylibium petroleiphilum PM1] Length = 158 Score = 242 bits (619), Expect = 1e-62, Method: Composition-based stats. Identities = 113/151 (74%), Positives = 128/151 (84%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 + +GF+ TS D+L+ W++TGSL MTFGLACCAVEMM A RYD++RFG R SPRQ Sbjct: 6 VLKEGFITTSADKLINWSKTGSLWPMTFGLACCAVEMMHAGAARYDIDRFGMLFRPSPRQ 65 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 SD+MIVAGTL NKMA ALRRVYDQM EPR+V+SMGSCANGGGYYHYSYSVVRGCDRIVPV Sbjct: 66 SDLMIVAGTLCNKMAPALRRVYDQMAEPRWVLSMGSCANGGGYYHYSYSVVRGCDRIVPV 125 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 D+YVPGCPPTAEAL+YGIL LQ KIRR + Sbjct: 126 DVYVPGCPPTAEALLYGILQLQAKIRRENTI 156 >gi|307109384|gb|EFN57622.1| hypothetical protein CHLNCDRAFT_21383 [Chlorella variabilis] Length = 160 Score = 242 bits (619), Expect = 1e-62, Method: Composition-based stats. Identities = 112/147 (76%), Positives = 123/147 (83%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 F+V+ VDQLV WAR S+ MTFGLACCAVEMM RYD +RFG R SPRQSD MI Sbjct: 9 FVVSKVDQLVNWARRSSIWPMTFGLACCAVEMMHTGAARYDFDRFGIIFRPSPRQSDCMI 68 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGTLTNKMA ALR+VYDQMPEPR+V+SMGSCANGGGYYHYSY+VVRGCDRIVPVDIYVP Sbjct: 69 VAGTLTNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYAVVRGCDRIVPVDIYVP 128 Query: 158 GCPPTAEALIYGILLLQKKIRRVGNVK 184 GCPPTAEAL+YG+L LQKKI R + Sbjct: 129 GCPPTAEALLYGMLQLQKKIGRTKKTQ 155 >gi|194906298|ref|XP_001981347.1| GG11669 [Drosophila erecta] gi|190655985|gb|EDV53217.1| GG11669 [Drosophila erecta] Length = 212 Score = 242 bits (619), Expect = 1e-62, Method: Composition-based stats. Identities = 109/144 (75%), Positives = 125/144 (86%) Query: 41 TSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAG 100 +D L+ W R GSL MTFGLACCAVEMM + PRYD++R+G RASPRQ+DV+IVAG Sbjct: 64 ARLDDLLNWGRKGSLWPMTFGLACCAVEMMHIAAPRYDMDRYGVVFRASPRQADVIIVAG 123 Query: 101 TLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCP 160 TLTNKMA A R+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCP Sbjct: 124 TLTNKMAPAFRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCP 183 Query: 161 PTAEALIYGILLLQKKIRRVGNVK 184 PTAEAL+YGIL LQKK++R+ ++ Sbjct: 184 PTAEALMYGILQLQKKVKRMRTLQ 207 >gi|253998384|ref|YP_003050447.1| NADH dehydrogenase subunit B [Methylovorus sp. SIP3-4] gi|313200460|ref|YP_004039118.1| NADH-quinone oxidoreductase subunit B [Methylovorus sp. MP688] gi|253985063|gb|ACT49920.1| NADH-quinone oxidoreductase, B subunit [Methylovorus sp. SIP3-4] gi|312439776|gb|ADQ83882.1| NADH-quinone oxidoreductase, B subunit [Methylovorus sp. MP688] Length = 158 Score = 242 bits (619), Expect = 1e-62, Method: Composition-based stats. Identities = 111/151 (73%), Positives = 127/151 (84%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 + KGF+ T++D ++ + RTGSL MTFGLACCAVEMM A RYDL+RFG R SPRQ Sbjct: 6 VLEKGFVTTTLDTVINYTRTGSLWPMTFGLACCAVEMMHAGASRYDLDRFGIVFRPSPRQ 65 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 SDVMIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSY+VVRGCDRIVPV Sbjct: 66 SDVMIVAGTLVNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYAVVRGCDRIVPV 125 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 D+YVPGCPPTAEAL+YGI+ LQ KI+R + Sbjct: 126 DVYVPGCPPTAEALLYGIIQLQNKIKRTNTI 156 >gi|156048917|ref|XP_001590425.1| NADH-ubiquinone oxidoreductase [Sclerotinia sclerotiorum 1980] gi|154692564|gb|EDN92302.1| NADH-ubiquinone oxidoreductase [Sclerotinia sclerotiorum 1980 UF-70] Length = 235 Score = 242 bits (619), Expect = 1e-62, Method: Composition-based stats. Identities = 113/159 (71%), Positives = 129/159 (81%), Gaps = 3/159 (1%) Query: 29 ISSEITHKGFL---VTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA 85 + S+ KG + +T++DQ+ WAR GSL MTFGLACCAVEMM S PRYD +R G Sbjct: 72 LPSQEGKKGVMQYALTTLDQIANWARQGSLWPMTFGLACCAVEMMHLSTPRYDQDRLGII 131 Query: 86 PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRG 145 RASPRQSDVMIVAGTLTNKMA ALR+VYDQMP+PR+V+SMGSCANGGGYYHYSYSV RG Sbjct: 132 FRASPRQSDVMIVAGTLTNKMAPALRQVYDQMPDPRWVVSMGSCANGGGYYHYSYSVTRG 191 Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 CDRIVPVDIYVPGCPPT+EAL+YGI LQKK+R + Sbjct: 192 CDRIVPVDIYVPGCPPTSEALMYGIFQLQKKMRHTKITR 230 >gi|168050412|ref|XP_001777653.1| predicted protein [Physcomitrella patens subsp. patens] gi|162670996|gb|EDQ57555.1| predicted protein [Physcomitrella patens subsp. patens] Length = 174 Score = 242 bits (619), Expect = 1e-62, Method: Composition-based stats. Identities = 114/146 (78%), Positives = 126/146 (86%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 F+++ VD L+ WARTGS+ MTFGLACCAVEMM RYDL+RFG R SPRQSD MI Sbjct: 23 FVLSKVDALMNWARTGSIWPMTFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDCMI 82 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGTLTNKMA ALR+VYDQMPEPR+V+SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP Sbjct: 83 VAGTLTNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 142 Query: 158 GCPPTAEALIYGILLLQKKIRRVGNV 183 GCPPTAEAL+YG+L LQKKI R +V Sbjct: 143 GCPPTAEALLYGLLQLQKKINRRKDV 168 >gi|296828066|ref|XP_002851269.1| NADH dehydrogenase iron-sulfur protein 7 [Arthroderma otae CBS 113480] gi|238838823|gb|EEQ28485.1| NADH dehydrogenase iron-sulfur protein 7 [Arthroderma otae CBS 113480] Length = 227 Score = 242 bits (619), Expect = 1e-62, Method: Composition-based stats. Identities = 116/183 (63%), Positives = 134/183 (73%), Gaps = 3/183 (1%) Query: 5 TVNQKIISGQSSCSLEKVDADFSRISSEITHKGFL---VTSVDQLVTWARTGSLMWMTFG 61 T + +S + + S+ +G L +T++DQ+ WAR GSL MTFG Sbjct: 40 TEQSGALQSTASSVPARKPRREVPLPSQEKPQGVLDYALTTLDQVANWARQGSLWPMTFG 99 Query: 62 LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPR 121 LACCAVEMM S PRYD +R G RASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPR Sbjct: 100 LACCAVEMMHLSTPRYDQDRLGIIFRASPRQSDVMIVAGTLTNKMAPALRQVYDQMPEPR 159 Query: 122 YVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181 +VISMGSCANGGGYYHYSYSV RGCDRIVPVDIYVPGCPPT+EAL+YGI LQ+K+R Sbjct: 160 WVISMGSCANGGGYYHYSYSVTRGCDRIVPVDIYVPGCPPTSEALMYGIFQLQRKMRNTK 219 Query: 182 NVK 184 + Sbjct: 220 ITR 222 >gi|171058186|ref|YP_001790535.1| NADH dehydrogenase subunit B [Leptothrix cholodnii SP-6] gi|218527994|sp|B1Y828|NUOB_LEPCP RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|170775631|gb|ACB33770.1| NADH-quinone oxidoreductase, B subunit [Leptothrix cholodnii SP-6] Length = 158 Score = 242 bits (618), Expect = 1e-62, Method: Composition-based stats. Identities = 112/151 (74%), Positives = 128/151 (84%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 + +GF+ TSVD L+ W++TGSL MTFGLACCAVEMM A RYD++RFG R SPRQ Sbjct: 6 VLKEGFVTTSVDTLINWSKTGSLWPMTFGLACCAVEMMHAGASRYDIDRFGMLFRPSPRQ 65 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 SD+MIVAGTL NKMA ALR+VYDQM EPR+V+SMGSCANGGGYYHYSYSVVRGCDR+VPV Sbjct: 66 SDLMIVAGTLCNKMAPALRKVYDQMAEPRWVLSMGSCANGGGYYHYSYSVVRGCDRVVPV 125 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 D+YVPGCPPTAEAL+YGIL LQ KIRR + Sbjct: 126 DVYVPGCPPTAEALLYGILQLQAKIRRENTI 156 >gi|327301805|ref|XP_003235595.1| NADH:ubiquinone oxidoreductase 19.3kD subunit [Trichophyton rubrum CBS 118892] gi|326462947|gb|EGD88400.1| NADH:ubiquinone oxidoreductase 19.3kD subunit [Trichophyton rubrum CBS 118892] Length = 227 Score = 242 bits (618), Expect = 2e-62, Method: Composition-based stats. Identities = 118/184 (64%), Positives = 136/184 (73%), Gaps = 4/184 (2%) Query: 4 TTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFL---VTSVDQLVTWARTGSLMWMTF 60 T + + S S K + + S+ +G L +T++DQ+ WAR GSL MTF Sbjct: 40 TEQSSALQSTAGSVPARKPRREVP-LPSQEKPQGVLDYALTTLDQVANWARQGSLWPMTF 98 Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 GLACCAVEMM S PRYD +R G RASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEP Sbjct: 99 GLACCAVEMMHLSTPRYDQDRLGIIFRASPRQSDVMIVAGTLTNKMAPALRQVYDQMPEP 158 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 R+VISMGSCANGGGYYHYSYSV RGCDRIVPVDIYVPGCPPT+EAL+YGI LQ+K+R Sbjct: 159 RWVISMGSCANGGGYYHYSYSVTRGCDRIVPVDIYVPGCPPTSEALMYGIFQLQRKMRNT 218 Query: 181 GNVK 184 + Sbjct: 219 KITR 222 >gi|331212725|ref|XP_003307632.1| NADH-ubiquinone oxidoreductase subunit [Puccinia graminis f. sp. tritici CRL 75-36-700-3] gi|309298035|gb|EFP74626.1| NADH-ubiquinone oxidoreductase subunit [Puccinia graminis f. sp. tritici CRL 75-36-700-3] Length = 261 Score = 242 bits (618), Expect = 2e-62, Method: Composition-based stats. Identities = 111/154 (72%), Positives = 131/154 (85%) Query: 29 ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88 +++ ++++++D++V WAR GS+ MTFGLACCAVEMM + RYD +RFG RA Sbjct: 101 LATPRNGAEYVISTIDKIVNWARQGSIWPMTFGLACCAVEMMHMAAARYDQDRFGIIFRA 160 Query: 89 SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 148 SPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDR Sbjct: 161 SPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDR 220 Query: 149 IVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182 IVPVDIYVPGCPPTAEAL+YG+L LQ+K+RR Sbjct: 221 IVPVDIYVPGCPPTAEALMYGLLQLQRKMRRTRK 254 >gi|114321118|ref|YP_742801.1| NADH-quinone oxidoreductase, B subunit [Alkalilimnicola ehrlichii MLHE-1] gi|122311303|sp|Q0A776|NUOB_ALHEH RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|114227512|gb|ABI57311.1| NADH dehydrogenase subunit B [Alkalilimnicola ehrlichii MLHE-1] Length = 158 Score = 242 bits (618), Expect = 2e-62, Method: Composition-based stats. Identities = 116/151 (76%), Positives = 130/151 (86%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 + KGF+ TS D+++ WARTGS+ MTFGLACCAVEMMQA RYDL+RFG R SPRQ Sbjct: 6 LLEKGFVTTSADKVINWARTGSMWPMTFGLACCAVEMMQAGAARYDLDRFGIIFRPSPRQ 65 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 SDVMIVAGTL NKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDR+VPV Sbjct: 66 SDVMIVAGTLCNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRVVPV 125 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 D+YVPGCPPTAEALI+GI+ LQKKIR + Sbjct: 126 DVYVPGCPPTAEALIWGIMQLQKKIRTTNTI 156 >gi|319794667|ref|YP_004156307.1| NADH-quinone oxidoreductase, b subunit [Variovorax paradoxus EPS] gi|315597130|gb|ADU38196.1| NADH-quinone oxidoreductase, B subunit [Variovorax paradoxus EPS] Length = 159 Score = 242 bits (618), Expect = 2e-62, Method: Composition-based stats. Identities = 111/151 (73%), Positives = 129/151 (85%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 + +GF+ T+ D +V WA+TGSL MTFGLACCAVEMM A RYD++RFG R SPRQ Sbjct: 6 VLKEGFVTTTYDSVVNWAKTGSLWPMTFGLACCAVEMMHAGAARYDIDRFGMLFRPSPRQ 65 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 SD+MIVAGTL NKMA ALR+VYDQMPEPR+V+SMGSCANGGGYYHYSYSVVRGCDRIVPV Sbjct: 66 SDLMIVAGTLCNKMAPALRKVYDQMPEPRWVLSMGSCANGGGYYHYSYSVVRGCDRIVPV 125 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 D+YVPGCPPTAEAL+YG++ LQ+KIRR + Sbjct: 126 DVYVPGCPPTAEALLYGVIQLQQKIRRTNTI 156 >gi|242058541|ref|XP_002458416.1| hypothetical protein SORBIDRAFT_03g033090 [Sorghum bicolor] gi|241930391|gb|EES03536.1| hypothetical protein SORBIDRAFT_03g033090 [Sorghum bicolor] Length = 200 Score = 242 bits (618), Expect = 2e-62, Method: Composition-based stats. Identities = 114/144 (79%), Positives = 123/144 (85%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 F+V+ VD L+ WAR GS+ MTFGLACCAVEMM A RYD +RFG R SPRQSD MI Sbjct: 49 FVVSKVDDLMNWARKGSIWPMTFGLACCAVEMMHAGASRYDFDRFGVIFRPSPRQSDCMI 108 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP Sbjct: 109 VAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 168 Query: 158 GCPPTAEALIYGILLLQKKIRRVG 181 GCPPTAEAL+YG+L LQKKI R Sbjct: 169 GCPPTAEALLYGVLQLQKKINRRK 192 >gi|189351038|ref|YP_001946666.1| NADH dehydrogenase subunit B [Burkholderia multivorans ATCC 17616] gi|189335060|dbj|BAG44130.1| NADH dehydrogenase I chain B [Burkholderia multivorans ATCC 17616] Length = 173 Score = 242 bits (618), Expect = 2e-62, Method: Composition-based stats. Identities = 114/151 (75%), Positives = 127/151 (84%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 + +GF+ T+ D+L+ W RTGSL MTFGLACCAVEMM A RYDL+RFG R SPRQ Sbjct: 20 VLKEGFVTTTADKLINWTRTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGVVFRPSPRQ 79 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 SDVMIVAGTL NKMA ALRRVYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPV Sbjct: 80 SDVMIVAGTLCNKMAPALRRVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPV 139 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 D+YVPGCPPTAEAL+YG++ LQ KIRR + Sbjct: 140 DVYVPGCPPTAEALVYGVIQLQAKIRRTNTI 170 >gi|325983288|ref|YP_004295690.1| NADH-quinone oxidoreductase, B subunit [Nitrosomonas sp. AL212] gi|325532807|gb|ADZ27528.1| NADH-quinone oxidoreductase, B subunit [Nitrosomonas sp. AL212] Length = 158 Score = 242 bits (618), Expect = 2e-62, Method: Composition-based stats. Identities = 113/151 (74%), Positives = 125/151 (82%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 KGF+ TS+D ++ W RTGS+ MTFGLACCAVEMM+ RYDL+RFG R SPRQ Sbjct: 6 TLEKGFITTSLDSIINWGRTGSMWPMTFGLACCAVEMMETGASRYDLDRFGIVFRPSPRQ 65 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 SDVMIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPV Sbjct: 66 SDVMIVAGTLCNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPV 125 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 DIYVPGCPPTAEAL+YGI+ LQ KI R + Sbjct: 126 DIYVPGCPPTAEALLYGIIQLQNKINRTNTI 156 >gi|91782613|ref|YP_557819.1| NADH dehydrogenase subunit B [Burkholderia xenovorans LB400] gi|170696398|ref|ZP_02887527.1| NADH-quinone oxidoreductase, B subunit [Burkholderia graminis C4D1M] gi|186476763|ref|YP_001858233.1| NADH dehydrogenase subunit B [Burkholderia phymatum STM815] gi|187923341|ref|YP_001894983.1| NADH dehydrogenase subunit B [Burkholderia phytofirmans PsJN] gi|209518514|ref|ZP_03267335.1| NADH-quinone oxidoreductase, B subunit [Burkholderia sp. H160] gi|295676038|ref|YP_003604562.1| NADH-quinone oxidoreductase, B subunit [Burkholderia sp. CCGE1002] gi|296160630|ref|ZP_06843445.1| NADH-quinone oxidoreductase, B subunit [Burkholderia sp. Ch1-1] gi|307730339|ref|YP_003907563.1| NADH-quinone oxidoreductase subunit B [Burkholderia sp. CCGE1003] gi|323525437|ref|YP_004227590.1| NADH-quinone oxidoreductase subunit B [Burkholderia sp. CCGE1001] gi|123358972|sp|Q142H2|NUOB_BURXL RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|218528024|sp|B2JDM7|NUOB_BURP8 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|218528025|sp|B2T2E8|NUOB_BURPP RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|91686567|gb|ABE29767.1| NADH dehydrogenase subunit B [Burkholderia xenovorans LB400] gi|170138726|gb|EDT06925.1| NADH-quinone oxidoreductase, B subunit [Burkholderia graminis C4D1M] gi|184193222|gb|ACC71187.1| NADH-quinone oxidoreductase, B subunit [Burkholderia phymatum STM815] gi|187714535|gb|ACD15759.1| NADH-quinone oxidoreductase, B subunit [Burkholderia phytofirmans PsJN] gi|209501059|gb|EEA01094.1| NADH-quinone oxidoreductase, B subunit [Burkholderia sp. H160] gi|295435881|gb|ADG15051.1| NADH-quinone oxidoreductase, B subunit [Burkholderia sp. CCGE1002] gi|295889156|gb|EFG68959.1| NADH-quinone oxidoreductase, B subunit [Burkholderia sp. Ch1-1] gi|307584874|gb|ADN58272.1| NADH-quinone oxidoreductase, B subunit [Burkholderia sp. CCGE1003] gi|323382439|gb|ADX54530.1| NADH-quinone oxidoreductase, B subunit [Burkholderia sp. CCGE1001] Length = 159 Score = 242 bits (618), Expect = 2e-62, Method: Composition-based stats. Identities = 113/151 (74%), Positives = 127/151 (84%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 + +GF+ T+ D+L+ W RTGSL MTFGLACCAVEMM A RYDL+RFG R SPRQ Sbjct: 6 VLKEGFVTTTADKLINWTRTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGVVFRPSPRQ 65 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 SDVMIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPV Sbjct: 66 SDVMIVAGTLCNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPV 125 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 D+YVPGCPPTAEAL+YG++ LQ KIRR + Sbjct: 126 DVYVPGCPPTAEALVYGVIQLQAKIRRTNTI 156 >gi|46137521|ref|XP_390452.1| hypothetical protein FG10276.1 [Gibberella zeae PH-1] Length = 222 Score = 242 bits (618), Expect = 2e-62, Method: Composition-based stats. Identities = 115/185 (62%), Positives = 139/185 (75%), Gaps = 4/185 (2%) Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKG---FLVTSVDQLVTWARTGSLMWMT 59 + + + QS+ + V + + SEI KG + +T++D + WAR SL MT Sbjct: 34 NSRRDASALQTQSATGVGNVRREVP-LPSEIPPKGALQYALTTLDAVTNWARQSSLWPMT 92 Query: 60 FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119 FGLACCAVEMM S PRYD +R G RASPRQSDVMIVAGTLTNKMA ALR+VYDQMPE Sbjct: 93 FGLACCAVEMMHLSTPRYDQDRLGIIFRASPRQSDVMIVAGTLTNKMAPALRQVYDQMPE 152 Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179 PR+VISMGSCANGGGYYHYSY+VVRGCDR+VPVD+YVPGCPPT+EAL+YGI LQ+K+R+ Sbjct: 153 PRWVISMGSCANGGGYYHYSYAVVRGCDRVVPVDVYVPGCPPTSEALMYGIFQLQRKMRQ 212 Query: 180 VGNVK 184 + Sbjct: 213 TRITR 217 >gi|119897688|ref|YP_932901.1| NADH dehydrogenase subunit B [Azoarcus sp. BH72] gi|218527941|sp|A1K5A9|NUOB1_AZOSB RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName: Full=NADH dehydrogenase I subunit B 1; AltName: Full=NDH-1 subunit B 1 gi|119670101|emb|CAL94014.1| putative NADH-ubiquinone oxidoreductase chain B [Azoarcus sp. BH72] Length = 158 Score = 242 bits (618), Expect = 2e-62, Method: Composition-based stats. Identities = 111/149 (74%), Positives = 126/149 (84%) Query: 35 HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSD 94 +GF+ TS+D ++ W RTGSL MTFGLACCAVEM+ A RYDL+RFG R SPRQSD Sbjct: 8 REGFVTTSLDAVINWTRTGSLWPMTFGLACCAVEMIHAGCSRYDLDRFGVVFRPSPRQSD 67 Query: 95 VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154 +MIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVD+ Sbjct: 68 LMIVAGTLCNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDV 127 Query: 155 YVPGCPPTAEALIYGILLLQKKIRRVGNV 183 YVPGCPPTAEAL+YGI+ LQ KI+R + Sbjct: 128 YVPGCPPTAEALLYGIIQLQNKIKRTNTI 156 >gi|82702221|ref|YP_411787.1| NADH dehydrogenase subunit B [Nitrosospira multiformis ATCC 25196] gi|123544732|sp|Q2YA26|NUOB2_NITMU RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName: Full=NADH dehydrogenase I subunit B 2; AltName: Full=NDH-1 subunit B 2 gi|82410286|gb|ABB74395.1| NADH dehydrogenase subunit B [Nitrosospira multiformis ATCC 25196] Length = 158 Score = 242 bits (618), Expect = 2e-62, Method: Composition-based stats. Identities = 115/151 (76%), Positives = 127/151 (84%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 + KGF+ TS+D ++ W RTGS+ MTFGLACCAVEMMQA RYDL+RFG R SPRQ Sbjct: 6 VMEKGFVTTSLDSVINWGRTGSMWPMTFGLACCAVEMMQAGASRYDLDRFGIVFRPSPRQ 65 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 SDVMIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPV Sbjct: 66 SDVMIVAGTLCNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPV 125 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 DIYVPGCPPTAEAL+YGI+ LQ KI R + Sbjct: 126 DIYVPGCPPTAEALLYGIIQLQNKIHRTNTI 156 >gi|116201555|ref|XP_001226589.1| hypothetical protein CHGG_08662 [Chaetomium globosum CBS 148.51] gi|88177180|gb|EAQ84648.1| hypothetical protein CHGG_08662 [Chaetomium globosum CBS 148.51] Length = 223 Score = 242 bits (618), Expect = 2e-62, Method: Composition-based stats. Identities = 115/177 (64%), Positives = 134/177 (75%), Gaps = 3/177 (1%) Query: 11 ISGQSSCSLEKVDADFSRISSEITHKG---FLVTSVDQLVTWARTGSLMWMTFGLACCAV 67 + + L K D + S+ KG + +T++D + WAR GSL MTFGLACCAV Sbjct: 42 VQPHAGYGLAKPDRKEVPLPSQEPTKGLVQYALTTLDIMTNWARQGSLWPMTFGLACCAV 101 Query: 68 EMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMG 127 EMM S PRYD +R G RASPRQSDVMIVAGTLTNKMA ALR+VYDQMP+PR+VISMG Sbjct: 102 EMMHLSAPRYDQDRLGIIFRASPRQSDVMIVAGTLTNKMAPALRQVYDQMPDPRWVISMG 161 Query: 128 SCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 SCANGGGYYHYSYSVVRGCDRIVPVD+YVPGCPPT+EAL+YGI LQ+K+R + Sbjct: 162 SCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTSEALMYGIFQLQRKMRNTKITR 218 >gi|119497569|ref|XP_001265543.1| NADH-ubiquinone oxidoreductase subunit B, putative [Neosartorya fischeri NRRL 181] gi|119413705|gb|EAW23646.1| NADH-ubiquinone oxidoreductase subunit B, putative [Neosartorya fischeri NRRL 181] Length = 226 Score = 242 bits (617), Expect = 2e-62, Method: Composition-based stats. Identities = 105/164 (64%), Positives = 128/164 (78%), Gaps = 1/164 (0%) Query: 22 VDADFSRISSEITHK-GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLE 80 + F++ E K ++T+ D L+ WAR GS + FGLACC VEMM ASMPRYD + Sbjct: 58 LPTSFNQSKEENAGKLHHILTTTDSLINWARQGSFWPLAFGLACCGVEMMAASMPRYDQD 117 Query: 81 RFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSY 140 R G RASPRQ+DVMIV+GT+TNKMA ALR++YDQMP+P++VISMGSCANGGGYYH+SY Sbjct: 118 RQGIIFRASPRQADVMIVSGTVTNKMAPALRQLYDQMPDPKWVISMGSCANGGGYYHHSY 177 Query: 141 SVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 SVVRG DR+VPVDIYVPGCPPT EAL+YGIL L++KI R + Sbjct: 178 SVVRGVDRLVPVDIYVPGCPPTPEALLYGILQLKRKIERTKVTR 221 >gi|78067045|ref|YP_369814.1| NADH dehydrogenase subunit B [Burkholderia sp. 383] gi|107023187|ref|YP_621514.1| NADH dehydrogenase subunit B [Burkholderia cenocepacia AU 1054] gi|115352337|ref|YP_774176.1| NADH dehydrogenase subunit B [Burkholderia ambifaria AMMD] gi|116690269|ref|YP_835892.1| NADH dehydrogenase subunit B [Burkholderia cenocepacia HI2424] gi|134296432|ref|YP_001120167.1| NADH dehydrogenase subunit B [Burkholderia vietnamiensis G4] gi|161524205|ref|YP_001579217.1| NADH dehydrogenase subunit B [Burkholderia multivorans ATCC 17616] gi|167585972|ref|ZP_02378360.1| NADH-quinone oxidoreductase, B subunit [Burkholderia ubonensis Bu] gi|170698110|ref|ZP_02889190.1| NADH-quinone oxidoreductase, B subunit [Burkholderia ambifaria IOP40-10] gi|170733608|ref|YP_001765555.1| NADH dehydrogenase subunit B [Burkholderia cenocepacia MC0-3] gi|171316304|ref|ZP_02905525.1| NADH-quinone oxidoreductase, B subunit [Burkholderia ambifaria MEX-5] gi|172061208|ref|YP_001808860.1| NADH dehydrogenase subunit B [Burkholderia ambifaria MC40-6] gi|221211736|ref|ZP_03584715.1| NADH-quinone oxidoreductase subunit b (nadh dehydrogenase i subunit b) (ndh-1 subunit b) [Burkholderia multivorans CGD1] gi|122322642|sp|Q0BDD1|NUOB_BURCM RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|123244856|sp|Q1BV14|NUOB_BURCA RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|123568005|sp|Q39EE6|NUOB_BURS3 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|218527979|sp|B1YTQ6|NUOB_BURA4 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|218527980|sp|B1JVP0|NUOB_BURCC RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|218527981|sp|A0K922|NUOB_BURCH RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|218527982|sp|A4JGC9|NUOB_BURVG RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|218528023|sp|A9AFY8|NUOB_BURM1 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|218528071|sp|B4E5M1|NUOB_BURCJ RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|77967790|gb|ABB09170.1| NADH dehydrogenase subunit B [Burkholderia sp. 383] gi|105893376|gb|ABF76541.1| NADH dehydrogenase subunit B [Burkholderia cenocepacia AU 1054] gi|115282325|gb|ABI87842.1| NADH dehydrogenase subunit B [Burkholderia ambifaria AMMD] gi|116648358|gb|ABK08999.1| NADH dehydrogenase subunit B [Burkholderia cenocepacia HI2424] gi|134139589|gb|ABO55332.1| NADH dehydrogenase subunit B [Burkholderia vietnamiensis G4] gi|160341634|gb|ABX14720.1| NADH-quinone oxidoreductase, B subunit [Burkholderia multivorans ATCC 17616] gi|169816850|gb|ACA91433.1| NADH-quinone oxidoreductase, B subunit [Burkholderia cenocepacia MC0-3] gi|170136968|gb|EDT05216.1| NADH-quinone oxidoreductase, B subunit [Burkholderia ambifaria IOP40-10] gi|171098530|gb|EDT43331.1| NADH-quinone oxidoreductase, B subunit [Burkholderia ambifaria MEX-5] gi|171993725|gb|ACB64644.1| NADH-quinone oxidoreductase, B subunit [Burkholderia ambifaria MC40-6] gi|221169097|gb|EEE01565.1| NADH-quinone oxidoreductase subunit b (nadh dehydrogenase i subunit b) (ndh-1 subunit b) [Burkholderia multivorans CGD1] gi|325520398|gb|EGC99516.1| NADH dehydrogenase subunit B [Burkholderia sp. TJI49] Length = 159 Score = 242 bits (617), Expect = 2e-62, Method: Composition-based stats. Identities = 114/151 (75%), Positives = 127/151 (84%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 + +GF+ T+ D+L+ W RTGSL MTFGLACCAVEMM A RYDL+RFG R SPRQ Sbjct: 6 VLKEGFVTTTADKLINWTRTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGVVFRPSPRQ 65 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 SDVMIVAGTL NKMA ALRRVYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPV Sbjct: 66 SDVMIVAGTLCNKMAPALRRVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPV 125 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 D+YVPGCPPTAEAL+YG++ LQ KIRR + Sbjct: 126 DVYVPGCPPTAEALVYGVIQLQAKIRRTNTI 156 >gi|315056963|ref|XP_003177856.1| NADH dehydrogenase iron-sulfur protein 7 [Arthroderma gypseum CBS 118893] gi|311339702|gb|EFQ98904.1| NADH dehydrogenase iron-sulfur protein 7 [Arthroderma gypseum CBS 118893] Length = 227 Score = 242 bits (617), Expect = 2e-62, Method: Composition-based stats. Identities = 118/184 (64%), Positives = 136/184 (73%), Gaps = 4/184 (2%) Query: 4 TTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFL---VTSVDQLVTWARTGSLMWMTF 60 T + + S S K + + S+ +G L +T++DQ+ WAR GSL MTF Sbjct: 40 TEQSSALQSTAGSVPARKPRREVP-LPSQEKPQGVLDYALTTLDQVANWARQGSLWPMTF 98 Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 GLACCAVEMM S PRYD +R G RASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEP Sbjct: 99 GLACCAVEMMHLSTPRYDQDRLGIIFRASPRQSDVMIVAGTLTNKMAPALRQVYDQMPEP 158 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 R+VISMGSCANGGGYYHYSYSV RGCDRIVPVDIYVPGCPPT+EAL+YGI LQ+K+R Sbjct: 159 RWVISMGSCANGGGYYHYSYSVTRGCDRIVPVDIYVPGCPPTSEALMYGIFQLQRKMRNT 218 Query: 181 GNVK 184 + Sbjct: 219 KITR 222 >gi|71906589|ref|YP_284176.1| NADH dehydrogenase subunit B [Dechloromonas aromatica RCB] gi|123627979|sp|Q47HH5|NUOB_DECAR RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|71846210|gb|AAZ45706.1| NADH dehydrogenase subunit B [Dechloromonas aromatica RCB] Length = 158 Score = 242 bits (617), Expect = 2e-62, Method: Composition-based stats. Identities = 115/151 (76%), Positives = 129/151 (85%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 + +GF+ T+ D+L+ + RTGSL MTFGLACCAVEM+ A + RYDL+RFG R SPRQ Sbjct: 6 VLQEGFVTTTADKLINYMRTGSLWPMTFGLACCAVEMIHAGVSRYDLDRFGVVFRPSPRQ 65 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 SDVMIVAGTLTNKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPV Sbjct: 66 SDVMIVAGTLTNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPV 125 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 DIYVPGCPPTAEALIYGI+ LQ KIRR + Sbjct: 126 DIYVPGCPPTAEALIYGIIQLQNKIRRTNTI 156 >gi|226499630|ref|NP_001151765.1| LOC100285400 [Zea mays] gi|194708402|gb|ACF88285.1| unknown [Zea mays] gi|195621542|gb|ACG32601.1| NADH-ubiquinone oxidoreductase 20 kDa subunit [Zea mays] gi|195649579|gb|ACG44257.1| NADH-ubiquinone oxidoreductase 20 kDa subunit [Zea mays] Length = 200 Score = 242 bits (617), Expect = 2e-62, Method: Composition-based stats. Identities = 114/144 (79%), Positives = 123/144 (85%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 F+V+ VD L+ WAR GS+ MTFGLACCAVEMM A RYD +RFG R SPRQSD MI Sbjct: 49 FVVSKVDDLMNWARKGSIWPMTFGLACCAVEMMHAGASRYDFDRFGVIFRPSPRQSDCMI 108 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP Sbjct: 109 VAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 168 Query: 158 GCPPTAEALIYGILLLQKKIRRVG 181 GCPPTAEAL+YG+L LQKKI R Sbjct: 169 GCPPTAEALLYGVLQLQKKINRRK 192 >gi|190575277|ref|YP_001973122.1| NADH dehydrogenase subunit B [Stenotrophomonas maltophilia K279a] gi|194366603|ref|YP_002029213.1| NADH dehydrogenase subunit B [Stenotrophomonas maltophilia R551-3] gi|254524125|ref|ZP_05136180.1| NADH-ubiquinone oxidoreductase Nqo6 subunit [Stenotrophomonas sp. SKA14] gi|218528009|sp|B4SQT5|NUOB_STRM5 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|218528010|sp|B2FNX8|NUOB_STRMK RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|190013199|emb|CAQ46832.1| putative NADH dehydrogenase I chain B [Stenotrophomonas maltophilia K279a] gi|194349407|gb|ACF52530.1| NADH-quinone oxidoreductase, B subunit [Stenotrophomonas maltophilia R551-3] gi|219721716|gb|EED40241.1| NADH-ubiquinone oxidoreductase Nqo6 subunit [Stenotrophomonas sp. SKA14] Length = 184 Score = 242 bits (617), Expect = 2e-62, Method: Composition-based stats. Identities = 118/184 (64%), Positives = 139/184 (75%), Gaps = 3/184 (1%) Query: 1 MGLTTVNQKIISGQSSCSLEKVDADF-SRISSEITHKGFLVTSVDQLVTWARTGSLMWMT 59 MG+ +++ + +VD + + KGF+ TSVD L+ WARTGS+ MT Sbjct: 1 MGVIQTLDGLMNNPT--PEGRVDDILRPEGDNPLLEKGFVTTSVDALLNWARTGSMWPMT 58 Query: 60 FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119 FGLACCAVEMM A R DL+R+G R SPRQSDVMIVAGTL NKMA ALR+VYDQMP+ Sbjct: 59 FGLACCAVEMMHAGAARLDLDRYGVVFRPSPRQSDVMIVAGTLVNKMAPALRKVYDQMPD 118 Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179 P++VISMGSCANGGGYYHYSYSVVRGCDR+VPVD+YVPGCPPTAEAL+YGIL LQKKI R Sbjct: 119 PKWVISMGSCANGGGYYHYSYSVVRGCDRVVPVDVYVPGCPPTAEALVYGILQLQKKIWR 178 Query: 180 VGNV 183 + Sbjct: 179 TQTI 182 >gi|254796791|ref|YP_003081628.1| NADH-quinone oxidoreductase chain b [Neorickettsia risticii str. Illinois] gi|254590025|gb|ACT69387.1| NADH-quinone oxidoreductase chain b [Neorickettsia risticii str. Illinois] Length = 167 Score = 242 bits (617), Expect = 2e-62, Method: Composition-based stats. Identities = 116/152 (76%), Positives = 127/152 (83%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP 90 S + G+LV +D L+ WAR GSL MTFGLACCAVEMM + RYD++RFG R SP Sbjct: 12 SNVGSDGYLVAKLDDLINWARAGSLWPMTFGLACCAVEMMHFTASRYDMDRFGMIFRPSP 71 Query: 91 RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150 RQSDVMIVAGTLTNKMA ALRRVYDQM EP+YVISMGSCANGGGYYHYSYSVVRGCDRIV Sbjct: 72 RQSDVMIVAGTLTNKMAPALRRVYDQMAEPKYVISMGSCANGGGYYHYSYSVVRGCDRIV 131 Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182 PVD+YVPGCPPTAEAL+YG+L LQKKI R N Sbjct: 132 PVDVYVPGCPPTAEALLYGVLCLQKKINRQRN 163 >gi|91776412|ref|YP_546168.1| NADH-quinone oxidoreductase, B subunit [Methylobacillus flagellatus KT] gi|123380391|sp|Q1GZL0|NUOB_METFK RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|91710399|gb|ABE50327.1| NADH dehydrogenase subunit B [Methylobacillus flagellatus KT] Length = 158 Score = 242 bits (617), Expect = 2e-62, Method: Composition-based stats. Identities = 111/151 (73%), Positives = 127/151 (84%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 + KGF+ T++D ++ + RTGSL MTFGLACCAVEMM A RYDL+RFG R SPRQ Sbjct: 6 VLEKGFVTTTLDTVINYTRTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGIVFRPSPRQ 65 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 SDVMIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSY+VVRGCDRIVPV Sbjct: 66 SDVMIVAGTLVNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYAVVRGCDRIVPV 125 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 D+YVPGCPPTAEAL+YGI+ LQ KI+R + Sbjct: 126 DVYVPGCPPTAEALLYGIIQLQNKIKRTNTI 156 >gi|330817791|ref|YP_004361496.1| NADH dehydrogenase subunit B [Burkholderia gladioli BSR3] gi|327370184|gb|AEA61540.1| NADH dehydrogenase subunit B [Burkholderia gladioli BSR3] Length = 159 Score = 241 bits (616), Expect = 3e-62, Method: Composition-based stats. Identities = 113/151 (74%), Positives = 127/151 (84%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 + +GF+ T+ D+L+ W RTGSL MTFGLACCAVEMM A RYDL+RFG R SPRQ Sbjct: 6 VLKEGFVTTTADKLINWTRTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGVVFRPSPRQ 65 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 SDVMIVAGTL NKMA ALRRVY+QM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPV Sbjct: 66 SDVMIVAGTLCNKMAPALRRVYEQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPV 125 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 D+YVPGCPPTAEAL+YG++ LQ KIRR + Sbjct: 126 DVYVPGCPPTAEALVYGVIQLQAKIRRTSTI 156 >gi|56478177|ref|YP_159766.1| NADH dehydrogenase subunit B [Aromatoleum aromaticum EbN1] gi|81356986|sp|Q5P1E9|NUOB_AZOSE RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|56314220|emb|CAI08865.1| NADH dehydrogenase I, chain B [Aromatoleum aromaticum EbN1] Length = 158 Score = 241 bits (616), Expect = 3e-62, Method: Composition-based stats. Identities = 111/149 (74%), Positives = 126/149 (84%) Query: 35 HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSD 94 +GF+ TS+D ++ W RTGSL MTFGLACCAVEM+ A RYDL+RFG R SPRQSD Sbjct: 8 REGFVTTSLDAVINWTRTGSLWPMTFGLACCAVEMIHAGCARYDLDRFGVVFRPSPRQSD 67 Query: 95 VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154 +MIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVD+ Sbjct: 68 LMIVAGTLCNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDV 127 Query: 155 YVPGCPPTAEALIYGILLLQKKIRRVGNV 183 YVPGCPPTAEAL+YGI+ LQ KI+R + Sbjct: 128 YVPGCPPTAEALLYGIIQLQNKIKRTNTI 156 >gi|328769253|gb|EGF79297.1| hypothetical protein BATDEDRAFT_12186 [Batrachochytrium dendrobatidis JAM81] Length = 170 Score = 241 bits (616), Expect = 3e-62, Method: Composition-based stats. Identities = 110/147 (74%), Positives = 127/147 (86%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 F++TS+D LV W RT S+ +TFGLACCAVEMM + PRYD +R G RASPRQ+DV+I Sbjct: 19 FVLTSLDSLVNWNRTSSIWPLTFGLACCAVEMMHMATPRYDQDRLGIVFRASPRQADVLI 78 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGTLTNKMA ALR++YDQMP PR+VISMGSCANGGGYYHYSYSVVRGCDRI+PVDIYVP Sbjct: 79 VAGTLTNKMAPALRKIYDQMPSPRWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVP 138 Query: 158 GCPPTAEALIYGILLLQKKIRRVGNVK 184 GCPPT+EAL+YG+L LQKK+RR VK Sbjct: 139 GCPPTSEALLYGVLQLQKKMRRERVVK 165 >gi|28198172|ref|NP_778486.1| NADH dehydrogenase subunit B [Xylella fastidiosa Temecula1] gi|28056242|gb|AAO28135.1| NADH-ubiquinone oxidoreductase NQO6 subunit [Xylella fastidiosa Temecula1] Length = 191 Score = 241 bits (616), Expect = 3e-62, Method: Composition-based stats. Identities = 118/183 (64%), Positives = 139/183 (75%), Gaps = 1/183 (0%) Query: 1 MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTF 60 MG+ ++++ + D + S + KG++ TSVD L+ WARTGS+ MTF Sbjct: 8 MGVIQAIDRLMTNPIPDG-QVDDILRPQGESPLLQKGYVTTSVDALLNWARTGSMWPMTF 66 Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 GLACCAVEMM A R DL+R+G R SPRQSDVMIVAGTL NKMA ALR+VYDQMP+P Sbjct: 67 GLACCAVEMMHAGAARLDLDRYGIVFRPSPRQSDVMIVAGTLVNKMAPALRKVYDQMPDP 126 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 ++VISMGSCANGGGYYHYSYSVVRGCDRIVPVD+YVPGCPPTAEAL+YGIL LQKKI R Sbjct: 127 KWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALVYGILQLQKKIWRT 186 Query: 181 GNV 183 + Sbjct: 187 KTI 189 >gi|121598483|ref|YP_992470.1| NADH dehydrogenase subunit B [Burkholderia mallei SAVP1] gi|124385700|ref|YP_001026727.1| NADH dehydrogenase subunit B [Burkholderia mallei NCTC 10229] gi|126439724|ref|YP_001058339.1| NADH dehydrogenase subunit B [Burkholderia pseudomallei 668] gi|126450627|ref|YP_001079988.1| NADH dehydrogenase subunit B [Burkholderia mallei NCTC 10247] gi|126451839|ref|YP_001065578.1| NADH dehydrogenase subunit B [Burkholderia pseudomallei 1106a] gi|167562178|ref|ZP_02355094.1| NADH dehydrogenase subunit B [Burkholderia oklahomensis EO147] gi|167569423|ref|ZP_02362297.1| NADH dehydrogenase subunit B [Burkholderia oklahomensis C6786] gi|167580423|ref|ZP_02373297.1| NADH dehydrogenase subunit B [Burkholderia thailandensis TXDOH] gi|167618532|ref|ZP_02387163.1| NADH dehydrogenase subunit B [Burkholderia thailandensis Bt4] gi|167718844|ref|ZP_02402080.1| NADH dehydrogenase subunit B [Burkholderia pseudomallei DM98] gi|167737853|ref|ZP_02410627.1| NADH dehydrogenase subunit B [Burkholderia pseudomallei 14] gi|167815037|ref|ZP_02446717.1| NADH dehydrogenase subunit B [Burkholderia pseudomallei 91] gi|167823453|ref|ZP_02454924.1| NADH dehydrogenase subunit B [Burkholderia pseudomallei 9] gi|167836050|ref|ZP_02462933.1| NADH dehydrogenase subunit B [Burkholderia thailandensis MSMB43] gi|167845005|ref|ZP_02470513.1| NADH dehydrogenase subunit B [Burkholderia pseudomallei B7210] gi|167893546|ref|ZP_02480948.1| NADH dehydrogenase subunit B [Burkholderia pseudomallei 7894] gi|167901992|ref|ZP_02489197.1| NADH dehydrogenase subunit B [Burkholderia pseudomallei NCTC 13177] gi|167910228|ref|ZP_02497319.1| NADH dehydrogenase subunit B [Burkholderia pseudomallei 112] gi|167918261|ref|ZP_02505352.1| NADH dehydrogenase subunit B [Burkholderia pseudomallei BCC215] gi|254175674|ref|ZP_04882334.1| NADH-quinone oxidoreductase, B subunit [Burkholderia mallei ATCC 10399] gi|254181186|ref|ZP_04887783.1| NADH-quinone oxidoreductase, B subunit [Burkholderia pseudomallei 1655] gi|254190549|ref|ZP_04897056.1| NADH-quinone oxidoreductase, B subunit [Burkholderia pseudomallei Pasteur 52237] gi|254195108|ref|ZP_04901537.1| NADH-quinone oxidoreductase, B subunit [Burkholderia pseudomallei S13] gi|254202109|ref|ZP_04908472.1| NADH-quinone oxidoreductase, B subunit [Burkholderia mallei FMH] gi|254258086|ref|ZP_04949140.1| NADH-quinone oxidoreductase, B subunit [Burkholderia pseudomallei 1710a] gi|254298534|ref|ZP_04965986.1| NADH-quinone oxidoreductase, B subunit [Burkholderia pseudomallei 406e] gi|254359861|ref|ZP_04976131.1| NADH-quinone oxidoreductase, B subunit [Burkholderia mallei 2002721280] gi|257139689|ref|ZP_05587951.1| NADH dehydrogenase subunit B [Burkholderia thailandensis E264] gi|218527942|sp|A3MIA2|NUOB1_BURM7 RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName: Full=NADH dehydrogenase I subunit B 1; AltName: Full=NDH-1 subunit B 1 gi|218527943|sp|A2S458|NUOB1_BURM9 RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName: Full=NADH dehydrogenase I subunit B 1; AltName: Full=NDH-1 subunit B 1 gi|218527965|sp|A1V2L7|NUOB1_BURMS RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName: Full=NADH dehydrogenase I subunit B 1; AltName: Full=NDH-1 subunit B 1 gi|218527966|sp|A3NTA7|NUOB1_BURP0 RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName: Full=NADH dehydrogenase I subunit B 1; AltName: Full=NDH-1 subunit B 1 gi|218527967|sp|A3N7L8|NUOB1_BURP6 RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName: Full=NADH dehydrogenase I subunit B 1; AltName: Full=NDH-1 subunit B 1 gi|218528060|sp|Q62IN6|NUOB1_BURMA RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName: Full=NADH dehydrogenase I subunit B 1; AltName: Full=NDH-1 subunit B 1 gi|218528063|sp|Q2SZN4|NUOB_BURTA RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|218528080|sp|Q63VN2|NUOB1_BURPS RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName: Full=NADH dehydrogenase I subunit B 1; AltName: Full=NDH-1 subunit B 1 gi|218528081|sp|Q3JUA8|NUOB1_BURP1 RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName: Full=NADH dehydrogenase I subunit B 1; AltName: Full=NDH-1 subunit B 1 gi|121227293|gb|ABM49811.1| NADH-quinone oxidoreductase, B subunit [Burkholderia mallei SAVP1] gi|124293720|gb|ABN02989.1| NADH-quinone oxidoreductase, B subunit [Burkholderia mallei NCTC 10229] gi|126219217|gb|ABN82723.1| NADH-quinone oxidoreductase, B subunit [Burkholderia pseudomallei 668] gi|126225481|gb|ABN89021.1| NADH-quinone oxidoreductase, B subunit [Burkholderia pseudomallei 1106a] gi|126243497|gb|ABO06590.1| NADH-quinone oxidoreductase, B subunit [Burkholderia mallei NCTC 10247] gi|147746356|gb|EDK53433.1| NADH-quinone oxidoreductase, B subunit [Burkholderia mallei FMH] gi|148029101|gb|EDK87006.1| NADH-quinone oxidoreductase, B subunit [Burkholderia mallei 2002721280] gi|157808426|gb|EDO85596.1| NADH-quinone oxidoreductase, B subunit [Burkholderia pseudomallei 406e] gi|157938224|gb|EDO93894.1| NADH-quinone oxidoreductase, B subunit [Burkholderia pseudomallei Pasteur 52237] gi|160696718|gb|EDP86688.1| NADH-quinone oxidoreductase, B subunit [Burkholderia mallei ATCC 10399] gi|169651856|gb|EDS84549.1| NADH-quinone oxidoreductase, B subunit [Burkholderia pseudomallei S13] gi|184211724|gb|EDU08767.1| NADH-quinone oxidoreductase, B subunit [Burkholderia pseudomallei 1655] gi|254216775|gb|EET06159.1| NADH-quinone oxidoreductase, B subunit [Burkholderia pseudomallei 1710a] Length = 159 Score = 241 bits (616), Expect = 3e-62, Method: Composition-based stats. Identities = 114/151 (75%), Positives = 127/151 (84%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 + +GF+ T+ D+L+ W RTGSL MTFGLACCAVEMM A RYDL+RFG R SPRQ Sbjct: 6 VLKEGFVTTTADKLINWTRTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGVVFRPSPRQ 65 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 SDVMIVAGTL NKMA ALRRVYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPV Sbjct: 66 SDVMIVAGTLCNKMAPALRRVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPV 125 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 D+YVPGCPPTAEAL+YG++ LQ KIRR + Sbjct: 126 DVYVPGCPPTAEALVYGVIQLQAKIRRTSTI 156 >gi|239816482|ref|YP_002945392.1| NADH dehydrogenase subunit B [Variovorax paradoxus S110] gi|259514693|sp|C5CT19|NUOB_VARPS RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|239803059|gb|ACS20126.1| NADH-quinone oxidoreductase, B subunit [Variovorax paradoxus S110] Length = 159 Score = 241 bits (616), Expect = 3e-62, Method: Composition-based stats. Identities = 111/151 (73%), Positives = 129/151 (85%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 + +GF+ T+ D +V WA+TGSL MTFGLACCAVEMM A RYD++RFG R SPRQ Sbjct: 6 VMKEGFVTTTYDSVVNWAKTGSLWPMTFGLACCAVEMMHAGAARYDIDRFGMLFRPSPRQ 65 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 SD+MIVAGTL NKMA ALR+VYDQMPEPR+V+SMGSCANGGGYYHYSYSVVRGCDRIVPV Sbjct: 66 SDLMIVAGTLCNKMAPALRKVYDQMPEPRWVLSMGSCANGGGYYHYSYSVVRGCDRIVPV 125 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 D+YVPGCPPTAEAL+YG++ LQ+KIRR + Sbjct: 126 DVYVPGCPPTAEALLYGVIQLQQKIRRTNTI 156 >gi|171677913|ref|XP_001903907.1| hypothetical protein [Podospora anserina S mat+] gi|170937025|emb|CAP61683.1| unnamed protein product [Podospora anserina S mat+] Length = 224 Score = 241 bits (616), Expect = 3e-62, Method: Composition-based stats. Identities = 113/184 (61%), Positives = 133/184 (72%), Gaps = 4/184 (2%) Query: 5 TVNQKIISGQSSCSLEKVDADFS-RISSEITHKGFL---VTSVDQLVTWARTGSLMWMTF 60 + + L K+ + S+ KGF+ +T++D + W R SL MTF Sbjct: 36 RKDAGAVQPHGGYGLSKLHERKEVPLPSQEGTKGFVQYALTTLDIITNWGRQSSLWPMTF 95 Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 GLACCAVEMM S PRYD +R G RASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEP Sbjct: 96 GLACCAVEMMHLSTPRYDQDRLGIIFRASPRQSDVMIVAGTLTNKMAPALRQVYDQMPEP 155 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 R+VISMGSCANGGGYYHYSYSVVRGCDR+VPVD+YVPGCPPT+EAL+YGI LQ+K+R Sbjct: 156 RWVISMGSCANGGGYYHYSYSVVRGCDRVVPVDVYVPGCPPTSEALMYGIFQLQRKMRNT 215 Query: 181 GNVK 184 + Sbjct: 216 KITR 219 >gi|225680692|gb|EEH18976.1| NADH dehydrogenase iron-sulfur protein [Paracoccidioides brasiliensis Pb03] Length = 228 Score = 241 bits (616), Expect = 3e-62, Method: Composition-based stats. Identities = 111/170 (65%), Positives = 129/170 (75%) Query: 15 SSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASM 74 ++ + + + F +T++DQ+ WAR SL MTFGLACCAVEMM S Sbjct: 54 TATGKPRREVPLPSQEKKGGAMQFALTTLDQVTNWARQSSLWPMTFGLACCAVEMMHLST 113 Query: 75 PRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGG 134 PRYD +R G RASPRQSDVMIVAGTLTNKMA ALR+VYDQMP+PR+VISMGSCANGGG Sbjct: 114 PRYDQDRLGIIFRASPRQSDVMIVAGTLTNKMAPALRQVYDQMPDPRWVISMGSCANGGG 173 Query: 135 YYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 YYHYSYSV RGCDRIVPVDIYVPGCPPT+EAL+YGI LQKK+R+ + Sbjct: 174 YYHYSYSVTRGCDRIVPVDIYVPGCPPTSEALMYGIFQLQKKMRQTRITR 223 >gi|226292374|gb|EEH47794.1| NADH-ubiquinone oxidoreductase 20 kDa subunit [Paracoccidioides brasiliensis Pb18] Length = 228 Score = 241 bits (615), Expect = 3e-62, Method: Composition-based stats. Identities = 111/170 (65%), Positives = 129/170 (75%) Query: 15 SSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASM 74 ++ + + + F +T++DQ+ WAR SL MTFGLACCAVEMM S Sbjct: 54 TATGKPRREVPLPSQEKKGGAMQFALTTLDQVTNWARQSSLWPMTFGLACCAVEMMHLST 113 Query: 75 PRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGG 134 PRYD +R G RASPRQSDVMIVAGTLTNKMA ALR+VYDQMP+PR+VISMGSCANGGG Sbjct: 114 PRYDQDRLGIIFRASPRQSDVMIVAGTLTNKMAPALRQVYDQMPDPRWVISMGSCANGGG 173 Query: 135 YYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 YYHYSYSV RGCDRIVPVDIYVPGCPPT+EAL+YGI LQKK+R+ + Sbjct: 174 YYHYSYSVTRGCDRIVPVDIYVPGCPPTSEALMYGIFQLQKKMRQTRITR 223 >gi|53718848|ref|YP_107834.1| NADH dehydrogenase subunit B [Burkholderia pseudomallei K96243] gi|53725818|ref|YP_103433.1| NADH dehydrogenase subunit B [Burkholderia mallei ATCC 23344] gi|76808565|ref|YP_332845.1| NADH dehydrogenase subunit B [Burkholderia pseudomallei 1710b] gi|83720537|ref|YP_441615.1| NADH dehydrogenase subunit B [Burkholderia thailandensis E264] gi|134283897|ref|ZP_01770593.1| NADH-quinone oxidoreductase, B subunit [Burkholderia pseudomallei 305] gi|251767151|ref|ZP_02266185.2| NADH-quinone oxidoreductase, B subunit [Burkholderia mallei PRL-20] gi|254207439|ref|ZP_04913789.1| NADH-quinone oxidoreductase, B subunit [Burkholderia mallei JHU] gi|52209262|emb|CAH35207.1| NADH dehydrogenase I chain B [Burkholderia pseudomallei K96243] gi|52429241|gb|AAU49834.1| NADH-quinone oxidoreductase, B subunit [Burkholderia mallei ATCC 23344] gi|76578018|gb|ABA47493.1| NADH dehydrogenase I chain B [Burkholderia pseudomallei 1710b] gi|83654362|gb|ABC38425.1| NADH-quinone oxidoreductase, B subunit [Burkholderia thailandensis E264] gi|134244686|gb|EBA44784.1| NADH-quinone oxidoreductase, B subunit [Burkholderia pseudomallei 305] gi|147751333|gb|EDK58400.1| NADH-quinone oxidoreductase, B subunit [Burkholderia mallei JHU] gi|243063701|gb|EES45887.1| NADH-quinone oxidoreductase, B subunit [Burkholderia mallei PRL-20] Length = 173 Score = 241 bits (615), Expect = 4e-62, Method: Composition-based stats. Identities = 114/151 (75%), Positives = 127/151 (84%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 + +GF+ T+ D+L+ W RTGSL MTFGLACCAVEMM A RYDL+RFG R SPRQ Sbjct: 20 VLKEGFVTTTADKLINWTRTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGVVFRPSPRQ 79 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 SDVMIVAGTL NKMA ALRRVYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPV Sbjct: 80 SDVMIVAGTLCNKMAPALRRVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPV 139 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 D+YVPGCPPTAEAL+YG++ LQ KIRR + Sbjct: 140 DVYVPGCPPTAEALVYGVIQLQAKIRRTSTI 170 >gi|226470042|emb|CAX70302.1| NADH dehydrogenase (ubiquinone) Fe-S protein 7 [Schistosoma japonicum] gi|226489138|emb|CAX74918.1| NADH dehydrogenase (ubiquinone) Fe-S protein 7 [Schistosoma japonicum] Length = 207 Score = 241 bits (615), Expect = 4e-62, Method: Composition-based stats. Identities = 103/180 (57%), Positives = 132/180 (73%), Gaps = 3/180 (1%) Query: 5 TVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLAC 64 + K + F + ++ F++T +D L WAR S+ +TFGLAC Sbjct: 26 PSEPSKVDNPDETIPYKPYSPFPKPQGKLD---FVLTRLDDLANWARKNSIYPLTFGLAC 82 Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 CAVEMM + PRYD++R+G RASPRQ+D+MIV+GT+TNKMA ALRR+YDQM P++VI Sbjct: 83 CAVEMMHIAGPRYDMDRYGVVFRASPRQADLMIVSGTVTNKMAPALRRIYDQMTHPKWVI 142 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 SMGSCANGGGYYHYSYSV+RGCDR++PVDIYVPGCPP+AEAL+Y IL LQKKI+ +V+ Sbjct: 143 SMGSCANGGGYYHYSYSVLRGCDRVIPVDIYVPGCPPSAEALMYSILQLQKKIKSEKHVQ 202 >gi|226372670|gb|ACO51960.1| NADH dehydrogenase iron-sulfur protein 7, mitochondrial precursor [Rana catesbeiana] Length = 217 Score = 241 bits (615), Expect = 4e-62, Method: Composition-based stats. Identities = 124/172 (72%), Positives = 137/172 (79%), Gaps = 3/172 (1%) Query: 4 TTVNQKIISGQSSCSLEKVDADFSRISSEITHKG-FLVTSVDQLVTWARTGSLMWMTFGL 62 T N+ IS S +K A + SS + KG F+VT +D LV WAR SL MTFGL Sbjct: 33 TADNENSISA--SLVRQKSSAVPATKSSVPSGKGEFIVTKLDDLVNWARRSSLWPMTFGL 90 Query: 63 ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122 ACCAVEMM + PRYD++RFG RASPRQ+DVMIVAGTLTNKMA ALR+VYDQMPEPRY Sbjct: 91 ACCAVEMMHMAAPRYDMDRFGVVFRASPRQADVMIVAGTLTNKMAPALRKVYDQMPEPRY 150 Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQ 174 V+SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQ Sbjct: 151 VVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQ 202 >gi|29841262|gb|AAP06294.1| similar to probable NADH-ubiquinone oxidoreductase 20 kDa subunit precursor; complex I-20kC; CI-20KD [Schistosoma japonicum] gi|226470044|emb|CAX70303.1| NADH dehydrogenase (ubiquinone) Fe-S protein 7 [Schistosoma japonicum] Length = 207 Score = 241 bits (615), Expect = 4e-62, Method: Composition-based stats. Identities = 103/180 (57%), Positives = 132/180 (73%), Gaps = 3/180 (1%) Query: 5 TVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLAC 64 + K + F + ++ F++T +D L WAR S+ +TFGLAC Sbjct: 26 PSEPSKVDNPDESIPYKPYSPFPKPQGKLD---FVLTRLDDLANWARKNSIYPLTFGLAC 82 Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 CAVEMM + PRYD++R+G RASPRQ+D+MIV+GT+TNKMA ALRR+YDQM P++VI Sbjct: 83 CAVEMMHIAGPRYDMDRYGVVFRASPRQADLMIVSGTVTNKMAPALRRIYDQMTHPKWVI 142 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 SMGSCANGGGYYHYSYSV+RGCDR++PVDIYVPGCPP+AEAL+Y IL LQKKI+ +V+ Sbjct: 143 SMGSCANGGGYYHYSYSVLRGCDRVIPVDIYVPGCPPSAEALMYSILQLQKKIKSEKHVQ 202 >gi|182680806|ref|YP_001828966.1| NADH dehydrogenase subunit B [Xylella fastidiosa M23] gi|238065246|sp|B2I785|NUOB_XYLF2 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|238065259|sp|Q87EQ4|NUOB_XYLFT RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|182630916|gb|ACB91692.1| NADH-quinone oxidoreductase, B subunit [Xylella fastidiosa M23] gi|307579274|gb|ADN63243.1| NADH dehydrogenase subunit B [Xylella fastidiosa subsp. fastidiosa GB514] Length = 184 Score = 241 bits (615), Expect = 4e-62, Method: Composition-based stats. Identities = 118/183 (64%), Positives = 139/183 (75%), Gaps = 1/183 (0%) Query: 1 MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTF 60 MG+ ++++ + D + S + KG++ TSVD L+ WARTGS+ MTF Sbjct: 1 MGVIQAIDRLMTNPIPDG-QVDDILRPQGESPLLQKGYVTTSVDALLNWARTGSMWPMTF 59 Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 GLACCAVEMM A R DL+R+G R SPRQSDVMIVAGTL NKMA ALR+VYDQMP+P Sbjct: 60 GLACCAVEMMHAGAARLDLDRYGIVFRPSPRQSDVMIVAGTLVNKMAPALRKVYDQMPDP 119 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 ++VISMGSCANGGGYYHYSYSVVRGCDRIVPVD+YVPGCPPTAEAL+YGIL LQKKI R Sbjct: 120 KWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALVYGILQLQKKIWRT 179 Query: 181 GNV 183 + Sbjct: 180 KTI 182 >gi|114777362|ref|ZP_01452359.1| NADH dehydrogenase subunit B [Mariprofundus ferrooxydans PV-1] gi|114552144|gb|EAU54646.1| NADH dehydrogenase subunit B [Mariprofundus ferrooxydans PV-1] Length = 158 Score = 241 bits (615), Expect = 4e-62, Method: Composition-based stats. Identities = 111/151 (73%), Positives = 125/151 (82%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 + KGF+ T+ D+L+ AR GSL MTFGLACCAVEMM A RYDL+RFG R SPRQ Sbjct: 6 VLEKGFITTTADKLINGARAGSLWPMTFGLACCAVEMMHAGASRYDLDRFGIVFRPSPRQ 65 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 SDVM+VAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSYSV RGCDRIVPV Sbjct: 66 SDVMVVAGTLCNKMAPALRKVYDQMSEPRWVISMGSCANGGGYYHYSYSVTRGCDRIVPV 125 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 DIYVPGCPPTAEAL+YG + LQ+KI+R + Sbjct: 126 DIYVPGCPPTAEALLYGFIQLQEKIKRTNTI 156 >gi|295673086|ref|XP_002797089.1| NADH dehydrogenase iron-sulfur protein [Paracoccidioides brasiliensis Pb01] gi|226282461|gb|EEH38027.1| NADH dehydrogenase iron-sulfur protein [Paracoccidioides brasiliensis Pb01] Length = 228 Score = 241 bits (615), Expect = 4e-62, Method: Composition-based stats. Identities = 111/170 (65%), Positives = 128/170 (75%) Query: 15 SSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASM 74 ++ + + + F +T++DQ+ WAR SL MTFGLACCAVEMM S Sbjct: 54 TATGKPRREVPLPSQEKKGGAMQFALTTLDQVTNWARQSSLWPMTFGLACCAVEMMHLST 113 Query: 75 PRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGG 134 PRYD +R G RASPRQSDVMIVAGTLTNKMA ALR+VYDQMP+PR+VISMGSCANGGG Sbjct: 114 PRYDQDRLGIIFRASPRQSDVMIVAGTLTNKMAPALRQVYDQMPDPRWVISMGSCANGGG 173 Query: 135 YYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 YYHYSYSV RGCDRIVPVDIYVPGCPPT+EAL+YGI LQKK+R + Sbjct: 174 YYHYSYSVTRGCDRIVPVDIYVPGCPPTSEALMYGIFQLQKKMRHTRITR 223 >gi|114330926|ref|YP_747148.1| NADH dehydrogenase subunit B [Nitrosomonas eutropha C91] gi|122314158|sp|Q0AHJ9|NUOB_NITEC RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|114307940|gb|ABI59183.1| NADH dehydrogenase subunit B [Nitrosomonas eutropha C91] Length = 158 Score = 240 bits (614), Expect = 4e-62, Method: Composition-based stats. Identities = 114/150 (76%), Positives = 125/150 (83%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93 KGF+ T++D L+ W RTGS+ MTFGLACCAVEMMQ RYDL+RFG R SPRQS Sbjct: 7 LDKGFVTTNLDSLINWGRTGSMWPMTFGLACCAVEMMQTGASRYDLDRFGIVFRPSPRQS 66 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD 153 DVMIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVD Sbjct: 67 DVMIVAGTLCNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVD 126 Query: 154 IYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 IYVPGCPPTAEAL+YGI+ LQ KI R + Sbjct: 127 IYVPGCPPTAEALLYGIIQLQNKIWRTNTI 156 >gi|219130938|ref|XP_002185609.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217402949|gb|EEC42907.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 166 Score = 240 bits (614), Expect = 4e-62, Method: Composition-based stats. Identities = 113/141 (80%), Positives = 126/141 (89%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 + ++ VD LV WAR GSL MTFGLACCAVEMM A+ RYD+ERFG RASPRQSDVMI Sbjct: 15 YAISRVDDLVNWARKGSLWPMTFGLACCAVEMMHAAASRYDMERFGMVFRASPRQSDVMI 74 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGTLTNKMA ALR+VYDQMPEPR+V+SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP Sbjct: 75 VAGTLTNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 134 Query: 158 GCPPTAEALIYGILLLQKKIR 178 GCPPTAEAL+YG++ LQKK++ Sbjct: 135 GCPPTAEALLYGLIQLQKKVK 155 >gi|255943669|ref|XP_002562602.1| Pc20g00390 [Penicillium chrysogenum Wisconsin 54-1255] gi|211587337|emb|CAP85368.1| Pc20g00390 [Penicillium chrysogenum Wisconsin 54-1255] Length = 230 Score = 240 bits (614), Expect = 4e-62, Method: Composition-based stats. Identities = 116/179 (64%), Positives = 132/179 (73%), Gaps = 2/179 (1%) Query: 8 QKIISGQSSCSLEKVDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACC 65 Q S Q + K + S E + +T++DQ+ WAR SL MTFGLACC Sbjct: 47 QPSASAQQLTASGKARREVPLPSQEKKEGAMQYALTTLDQIANWARQSSLWPMTFGLACC 106 Query: 66 AVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVIS 125 AVEMM S PRYD +R G RASPRQSDVMIVAGTLTNKMA ALR+VYDQMP+PR+VIS Sbjct: 107 AVEMMHLSTPRYDQDRLGIIFRASPRQSDVMIVAGTLTNKMAPALRQVYDQMPDPRWVIS 166 Query: 126 MGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 MGSCANGGGYYHYSYSVVRGCDR+VPVDIYVPGCPPT+EAL+YGI LQKK+R + Sbjct: 167 MGSCANGGGYYHYSYSVVRGCDRVVPVDIYVPGCPPTSEALMYGIFQLQKKMRHTRITR 225 >gi|238881092|gb|EEQ44730.1| NADH-ubiquinone oxidoreductase 20 kDa subunit [Candida albicans WO-1] Length = 226 Score = 240 bits (614), Expect = 5e-62, Method: Composition-based stats. Identities = 107/169 (63%), Positives = 131/169 (77%), Gaps = 2/169 (1%) Query: 18 SLEKVDADFSRISSE--ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMP 75 + + + DF +S + +++TS+D + WAR S +TFGLACCAVEMM S P Sbjct: 53 TPQTLPTDFPLMSEKKATNAADYVLTSLDMIANWARKSSFWPVTFGLACCAVEMMHVSAP 112 Query: 76 RYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY 135 RYD +R G RASPRQSD+MIVAGTLTNKMA ALR+VYDQMP+P++VISMGSCANGGGY Sbjct: 113 RYDQDRLGIIFRASPRQSDIMIVAGTLTNKMAPALRQVYDQMPDPKWVISMGSCANGGGY 172 Query: 136 YHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 YHYSYSVVRGCDR++PVDIYVPGCPPTAEAL+YG+ LQKK+ + + Sbjct: 173 YHYSYSVVRGCDRVIPVDIYVPGCPPTAEALMYGVFQLQKKMMKTRITR 221 >gi|241953755|ref|XP_002419599.1| NADH-ubiquinone oxidoreductase subunit, putative [Candida dubliniensis CD36] gi|223642939|emb|CAX43194.1| NADH-ubiquinone oxidoreductase subunit, putative [Candida dubliniensis CD36] Length = 218 Score = 240 bits (614), Expect = 5e-62, Method: Composition-based stats. Identities = 106/181 (58%), Positives = 132/181 (72%) Query: 4 TTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLA 63 + ++ + + + + S D +++TS+D + WAR S +TFGLA Sbjct: 33 ISSHRYVSTKELTPSTLPTDFPLMSEKKATNAADYVLTSLDMIANWARKSSFWPVTFGLA 92 Query: 64 CCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYV 123 CCAVEMM S PRYD +R G RASPRQSD+MIVAGTLTNKMA ALR+VYDQMP+P++V Sbjct: 93 CCAVEMMHVSAPRYDQDRLGIIFRASPRQSDIMIVAGTLTNKMAPALRQVYDQMPDPKWV 152 Query: 124 ISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 ISMGSCANGGGYYHYSYSVVRGCDR++PVDIYVPGCPPTAEAL+YG+ LQKK+ + Sbjct: 153 ISMGSCANGGGYYHYSYSVVRGCDRVIPVDIYVPGCPPTAEALMYGVFQLQKKMMKTRIT 212 Query: 184 K 184 + Sbjct: 213 R 213 >gi|221199657|ref|ZP_03572701.1| NADH-quinone oxidoreductase, B subunit [Burkholderia multivorans CGD2M] gi|221205443|ref|ZP_03578458.1| NADH-quinone oxidoreductase, B subunit [Burkholderia multivorans CGD2] gi|221174281|gb|EEE06713.1| NADH-quinone oxidoreductase, B subunit [Burkholderia multivorans CGD2] gi|221180942|gb|EEE13345.1| NADH-quinone oxidoreductase, B subunit [Burkholderia multivorans CGD2M] Length = 153 Score = 240 bits (614), Expect = 5e-62, Method: Composition-based stats. Identities = 114/150 (76%), Positives = 126/150 (84%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93 +GF+ T+ D+L+ W RTGSL MTFGLACCAVEMM A RYDL+RFG R SPRQS Sbjct: 1 MKEGFVTTTADKLINWTRTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGVVFRPSPRQS 60 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD 153 DVMIVAGTL NKMA ALRRVYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVD Sbjct: 61 DVMIVAGTLCNKMAPALRRVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVD 120 Query: 154 IYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 +YVPGCPPTAEAL+YG++ LQ KIRR + Sbjct: 121 VYVPGCPPTAEALVYGVIQLQAKIRRTNTI 150 >gi|322711383|gb|EFZ02956.1| NADH-ubiquinone oxidoreductase 20 kD subunit [Metarhizium anisopliae ARSEF 23] Length = 316 Score = 240 bits (614), Expect = 5e-62, Method: Composition-based stats. Identities = 113/159 (71%), Positives = 128/159 (80%), Gaps = 3/159 (1%) Query: 29 ISSEITHKGFL---VTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA 85 + SE KG + +T++D + WAR SL MTFGLACCAVEMM S PRYD +R G Sbjct: 153 LPSEEGTKGVVQYALTTLDVIANWARQSSLWPMTFGLACCAVEMMHLSTPRYDQDRLGII 212 Query: 86 PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRG 145 RASPRQSDVMIVAGTLTNKMA ALR+VYDQMP+PR+VISMGSCANGGGYYHYSYSVVRG Sbjct: 213 FRASPRQSDVMIVAGTLTNKMAPALRQVYDQMPDPRWVISMGSCANGGGYYHYSYSVVRG 272 Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 CDRIVPVDIYVPGCPPT+EAL+YGI LQ+K+R + Sbjct: 273 CDRIVPVDIYVPGCPPTSEALMYGIFQLQRKMRNTKITR 311 >gi|257095318|ref|YP_003168959.1| NADH dehydrogenase subunit B [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257047842|gb|ACV37030.1| NADH-quinone oxidoreductase, B subunit [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 158 Score = 240 bits (614), Expect = 5e-62, Method: Composition-based stats. Identities = 111/151 (73%), Positives = 128/151 (84%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 I +GF+ T+ D+L+ + RTGSL M+FGLACCA+EM+ A RYDL+RFG R SPRQ Sbjct: 6 ILQEGFVTTTADKLINYVRTGSLWPMSFGLACCAIEMIHAGCSRYDLDRFGIVFRPSPRQ 65 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 SDVM+VAGTLTNKMA A+R+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPV Sbjct: 66 SDVMVVAGTLTNKMAPAMRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPV 125 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 DIYVPGCPPTAEALIYG++ LQ KIRR + Sbjct: 126 DIYVPGCPPTAEALIYGLIQLQNKIRRTNTI 156 >gi|238028142|ref|YP_002912373.1| NADH dehydrogenase subunit B [Burkholderia glumae BGR1] gi|237877336|gb|ACR29669.1| NADH-quinone oxidoreductase, B subunit [Burkholderia glumae BGR1] Length = 159 Score = 240 bits (614), Expect = 5e-62, Method: Composition-based stats. Identities = 113/151 (74%), Positives = 127/151 (84%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 + +GF+ T+ D+L+ W RTGSL +TFGLACCAVEMM A RYDL+RFG R SPRQ Sbjct: 6 VLKEGFVTTTADKLINWTRTGSLWPVTFGLACCAVEMMHAGAARYDLDRFGVVFRPSPRQ 65 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 SDVMIVAGTL NKMA ALRRVYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPV Sbjct: 66 SDVMIVAGTLCNKMAPALRRVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPV 125 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 D+YVPGCPPTAEAL+YG++ LQ KIRR + Sbjct: 126 DVYVPGCPPTAEALVYGVIQLQAKIRRTSTI 156 >gi|297604806|ref|NP_001056143.2| Os05g0533700 [Oryza sativa Japonica Group] gi|255676519|dbj|BAF18057.2| Os05g0533700 [Oryza sativa Japonica Group] Length = 154 Score = 240 bits (614), Expect = 5e-62, Method: Composition-based stats. Identities = 112/144 (77%), Positives = 122/144 (84%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 F+++ VD L+ WAR GS+ MTFGLACCAVEMM RYD +RFG R SPRQSD MI Sbjct: 3 FVISKVDDLMNWARRGSIWPMTFGLACCAVEMMHTGASRYDFDRFGVIFRPSPRQSDCMI 62 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP Sbjct: 63 VAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 122 Query: 158 GCPPTAEALIYGILLLQKKIRRVG 181 GCPPTAEAL+YG+L LQKKI R Sbjct: 123 GCPPTAEALLYGVLQLQKKINRRR 146 >gi|266656|sp|P29918|NQO6_PARDE RecName: Full=NADH-quinone oxidoreductase subunit 6; AltName: Full=NADH dehydrogenase I subunit 6; AltName: Full=NDH-1 subunit 6 Length = 173 Score = 240 bits (614), Expect = 5e-62, Method: Composition-based stats. Identities = 124/154 (80%), Positives = 138/154 (89%) Query: 23 DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82 D + ++ E+ KGFL+T+ + ++ WAR GSL WMTFGLACCAVEMMQ SMPRYDLERF Sbjct: 12 DLATAELNRELQDKGFLLTTTEDIINWARNGSLHWMTFGLACCAVEMMQTSMPRYDLERF 71 Query: 83 GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142 G APRASPRQSD+MIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSV Sbjct: 72 GTAPRASPRQSDLMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSV 131 Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKK 176 VRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQ++ Sbjct: 132 VRGCDRIVPVDIYVPGCPPTAEALLYGILQLQRR 165 >gi|71275689|ref|ZP_00651974.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit [Xylella fastidiosa Dixon] gi|71897855|ref|ZP_00680081.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit [Xylella fastidiosa Ann-1] gi|170729490|ref|YP_001774923.1| NADH dehydrogenase subunit B [Xylella fastidiosa M12] gi|254767800|sp|B0U1W6|NUOB_XYLFM RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|71163580|gb|EAO13297.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit [Xylella fastidiosa Dixon] gi|71732410|gb|EAO34464.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit [Xylella fastidiosa Ann-1] gi|167964283|gb|ACA11293.1| NADH dehydrogenase [Xylella fastidiosa M12] Length = 184 Score = 240 bits (614), Expect = 5e-62, Method: Composition-based stats. Identities = 118/183 (64%), Positives = 139/183 (75%), Gaps = 1/183 (0%) Query: 1 MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTF 60 MG+ ++++ + D + S + KG++ TSVD L+ WARTGS+ MTF Sbjct: 1 MGVIQAIDRLMTNPIPDG-QVDDILRPQGESPLLQKGYVTTSVDALLNWARTGSMWPMTF 59 Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 GLACCAVEMM A R DL+R+G R SPRQSDVMIVAGTL NKMA ALR+VYDQMP+P Sbjct: 60 GLACCAVEMMHAGAARLDLDRYGIVFRPSPRQSDVMIVAGTLVNKMAPALRKVYDQMPDP 119 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 ++VISMGSCANGGGYYHYSYSVVRGCDRIVPVD+YVPGCPPTAEAL+YGIL LQKKI R Sbjct: 120 KWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALVYGILQLQKKIWRT 179 Query: 181 GNV 183 + Sbjct: 180 QTI 182 >gi|68472189|ref|XP_719890.1| potential mitochondrial Complex I, NUKM_20kd subunit [Candida albicans SC5314] gi|68472424|ref|XP_719773.1| potential mitochondrial Complex I, NUKM_20kd subunit [Candida albicans SC5314] gi|46441605|gb|EAL00901.1| potential mitochondrial Complex I, NUKM_20kd subunit [Candida albicans SC5314] gi|46441731|gb|EAL01026.1| potential mitochondrial Complex I, NUKM_20kd subunit [Candida albicans SC5314] Length = 223 Score = 240 bits (613), Expect = 6e-62, Method: Composition-based stats. Identities = 107/169 (63%), Positives = 131/169 (77%), Gaps = 2/169 (1%) Query: 18 SLEKVDADFSRISSE--ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMP 75 + + + DF +S + +++TS+D + WAR S +TFGLACCAVEMM S P Sbjct: 50 TPQTLPTDFPLMSEKKATNAADYVLTSLDMIANWARKSSFWPVTFGLACCAVEMMHVSAP 109 Query: 76 RYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY 135 RYD +R G RASPRQSD+MIVAGTLTNKMA ALR+VYDQMP+P++VISMGSCANGGGY Sbjct: 110 RYDQDRLGIIFRASPRQSDIMIVAGTLTNKMAPALRQVYDQMPDPKWVISMGSCANGGGY 169 Query: 136 YHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 YHYSYSVVRGCDR++PVDIYVPGCPPTAEAL+YG+ LQKK+ + + Sbjct: 170 YHYSYSVVRGCDRVIPVDIYVPGCPPTAEALMYGVFQLQKKMMKTRITR 218 >gi|121714236|ref|XP_001274729.1| NADH-ubiquinone oxidoreductase subunit B, putative [Aspergillus clavatus NRRL 1] gi|119402882|gb|EAW13303.1| NADH-ubiquinone oxidoreductase subunit B, putative [Aspergillus clavatus NRRL 1] Length = 225 Score = 240 bits (613), Expect = 6e-62, Method: Composition-based stats. Identities = 101/146 (69%), Positives = 121/146 (82%) Query: 39 LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIV 98 ++T+ D L+ WAR GSL + FGLACC VEMM ASMPRYD +R G RASPRQ+DVMIV Sbjct: 75 ILTTTDALINWARQGSLWPLAFGLACCGVEMMAASMPRYDQDRQGIIFRASPRQADVMIV 134 Query: 99 AGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPG 158 AGT+TNKMA ALR++YDQMP+P++VISMGSCANGGGYYH+SYSVVRG DR+VPVDIYVPG Sbjct: 135 AGTVTNKMAPALRQLYDQMPDPKWVISMGSCANGGGYYHHSYSVVRGVDRLVPVDIYVPG 194 Query: 159 CPPTAEALIYGILLLQKKIRRVGNVK 184 CPPT EAL+Y + LQ+K+R + Sbjct: 195 CPPTPEALLYAVFQLQRKMRGTKVTR 220 >gi|255550832|ref|XP_002516464.1| NADH-plastoquinone oxidoreductase, putative [Ricinus communis] gi|223544284|gb|EEF45805.1| NADH-plastoquinone oxidoreductase, putative [Ricinus communis] Length = 215 Score = 240 bits (613), Expect = 6e-62, Method: Composition-based stats. Identities = 113/179 (63%), Positives = 131/179 (73%), Gaps = 1/179 (0%) Query: 4 TTVNQKIISGQSSCSLEKVDADFSRISSEITH-KGFLVTSVDQLVTWARTGSLMWMTFGL 62 TT+ + + + ++ ++++ VD L+ WAR GS+ MTFGL Sbjct: 29 TTLPSLSAEATPPTPYGRAPPPSTSFPTGLSKTAEYVISKVDDLMNWARRGSIWPMTFGL 88 Query: 63 ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122 ACCAVEMM RYDL+RFG R SPRQSD MIVAGTLTNKMA ALR+VYDQMPEPR+ Sbjct: 89 ACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDCMIVAGTLTNKMAPALRKVYDQMPEPRW 148 Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG+L LQK+I R Sbjct: 149 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGLLQLQKRINRRK 207 >gi|197105267|ref|YP_002130644.1| NADH dehydrogenase I, B subunit [Phenylobacterium zucineum HLK1] gi|238065189|sp|B4RCM8|NUOB_PHEZH RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|196478687|gb|ACG78215.1| NADH dehydrogenase I, B subunit [Phenylobacterium zucineum HLK1] Length = 193 Score = 240 bits (613), Expect = 6e-62, Method: Composition-based stats. Identities = 129/161 (80%), Positives = 143/161 (88%) Query: 23 DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82 D F +S + KGF+ + D L+TWARTGSLMWMTFGLACCAVEMMQASMPRYDLER+ Sbjct: 31 DPYFDGVSQRLADKGFVTAAADDLITWARTGSLMWMTFGLACCAVEMMQASMPRYDLERY 90 Query: 83 GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142 GFAPRASPRQSDVMIVAGTL NKMA ALR+VYDQMPEPRYVISMGSCANGGGYY++SYS Sbjct: 91 GFAPRASPRQSDVMIVAGTLVNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYYFSYST 150 Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 VRGCDR+VPVD+YVPGCPPTAEAL+YG+L LQKKIRR G + Sbjct: 151 VRGCDRVVPVDVYVPGCPPTAEALVYGVLQLQKKIRRTGTI 191 >gi|3025802|gb|AAC12755.1| NADH-ubiqionone oxidoreductase subunit NuoB [Sinorhizobium meliloti] Length = 165 Score = 240 bits (613), Expect = 6e-62, Method: Composition-based stats. Identities = 132/158 (83%), Positives = 143/158 (90%), Gaps = 1/158 (0%) Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAP 86 I++E+ KGFLVTS D+L+ WARTGSLMW LACCAVEMMQ SMPRYD ERFGFAP Sbjct: 7 EINNELADKGFLVTSTDELINWARTGSLMWNELSVLACCAVEMMQMSMPRYDAERFGFAP 66 Query: 87 RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGC 146 RASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGC Sbjct: 67 RASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGC 126 Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 DR+VPVDIYVPGCPPTAEAL+YG+LLLQKKIRR G ++ Sbjct: 127 DRVVPVDIYVPGCPPTAEALLYGVLLLQKKIRRTGTIE 164 >gi|148361101|ref|YP_001252308.1| NADH dehydrogenase I subunit B [Legionella pneumophila str. Corby] gi|218527993|sp|A5IHW2|NUOB_LEGPC RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|148282874|gb|ABQ56962.1| NADH dehydrogenase I, B subunit [Legionella pneumophila str. Corby] Length = 158 Score = 240 bits (613), Expect = 6e-62, Method: Composition-based stats. Identities = 115/149 (77%), Positives = 129/149 (86%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP 90 +E+ K F +T+V++LV WAR+GS+ MTFGLACCAVEMM RYDL+RFG R SP Sbjct: 4 AELEKKVFELTTVEKLVGWARSGSMWPMTFGLACCAVEMMHVGAARYDLDRFGIIFRPSP 63 Query: 91 RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150 RQSDVMIVAGTL NKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRIV Sbjct: 64 RQSDVMIVAGTLCNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIV 123 Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRR 179 PVD+YVPGCPPTAEAL+YGI+ LQ KIRR Sbjct: 124 PVDVYVPGCPPTAEALLYGIIQLQNKIRR 152 >gi|285017793|ref|YP_003375504.1| NADH-quinone oxidoreductase chain b (nadh dehydrogenaseI chain b) (ndh-1, chain b) (nuo2) oxidoreductase [Xanthomonas albilineans GPE PC73] gi|283473011|emb|CBA15516.1| probable nadh-quinone oxidoreductase chain b (nadh dehydrogenaseI chain b) (ndh-1, chain b) (nuo2). oxidoreductase protein [Xanthomonas albilineans] Length = 184 Score = 240 bits (613), Expect = 6e-62, Method: Composition-based stats. Identities = 118/184 (64%), Positives = 139/184 (75%), Gaps = 3/184 (1%) Query: 1 MGLTTVNQKIISGQSSCSLEKVDADF-SRISSEITHKGFLVTSVDQLVTWARTGSLMWMT 59 MG+ ++++ +VD + + KG++ TSVD L+ WARTGS+ MT Sbjct: 1 MGVIQTLDRLMTNP--IPEGRVDDILRPEGENPLLEKGYVTTSVDALLNWARTGSMWPMT 58 Query: 60 FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119 FGLACCAVEMM A R DL+R+G R SPRQSDVMIVAGTL NKMA ALR+VYDQMP+ Sbjct: 59 FGLACCAVEMMHAGAARLDLDRYGVVFRPSPRQSDVMIVAGTLVNKMAPALRKVYDQMPD 118 Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179 P++VISMGSCANGGGYYHYSYSVVRGCDRIVPVD+YVPGCPPTAEAL+YGIL LQKKI R Sbjct: 119 PKWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALVYGILQLQKKIWR 178 Query: 180 VGNV 183 + Sbjct: 179 TQTI 182 >gi|121604331|ref|YP_981660.1| NADH dehydrogenase subunit B [Polaromonas naphthalenivorans CJ2] gi|218528003|sp|A1VM61|NUOB_POLNA RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|120593300|gb|ABM36739.1| NADH dehydrogenase subunit B [Polaromonas naphthalenivorans CJ2] Length = 159 Score = 240 bits (613), Expect = 6e-62, Method: Composition-based stats. Identities = 112/149 (75%), Positives = 126/149 (84%) Query: 35 HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSD 94 +GF+ TS D +V WA+TGSL MTFGLACCAVEMM A RYD++RFG R SPRQSD Sbjct: 8 KEGFVTTSYDSVVNWAKTGSLWPMTFGLACCAVEMMHAGAARYDIDRFGMLFRPSPRQSD 67 Query: 95 VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154 +MIVAGTL NKM ALR+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVD+ Sbjct: 68 LMIVAGTLCNKMGPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDV 127 Query: 155 YVPGCPPTAEALIYGILLLQKKIRRVGNV 183 YVPGCPPTAEAL+YGI+ LQ+KIRR + Sbjct: 128 YVPGCPPTAEALLYGIIQLQQKIRRTNTI 156 >gi|48843827|gb|AAT47086.1| putative NADH-ubiquinone oxidoreductase 20 kDa subunit [Oryza sativa Japonica Group] gi|125553102|gb|EAY98811.1| hypothetical protein OsI_20756 [Oryza sativa Indica Group] gi|215769469|dbj|BAH01698.1| unnamed protein product [Oryza sativa Japonica Group] Length = 204 Score = 240 bits (613), Expect = 6e-62, Method: Composition-based stats. Identities = 112/144 (77%), Positives = 122/144 (84%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 F+++ VD L+ WAR GS+ MTFGLACCAVEMM RYD +RFG R SPRQSD MI Sbjct: 53 FVISKVDDLMNWARRGSIWPMTFGLACCAVEMMHTGASRYDFDRFGVIFRPSPRQSDCMI 112 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP Sbjct: 113 VAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 172 Query: 158 GCPPTAEALIYGILLLQKKIRRVG 181 GCPPTAEAL+YG+L LQKKI R Sbjct: 173 GCPPTAEALLYGVLQLQKKINRRR 196 >gi|21243431|ref|NP_643013.1| NADH dehydrogenase subunit B [Xanthomonas axonopodis pv. citri str. 306] gi|21108984|gb|AAM37549.1| NADH-ubiquinone oxidoreductase NQO6 subunit [Xanthomonas axonopodis pv. citri str. 306] Length = 191 Score = 240 bits (613), Expect = 6e-62, Method: Composition-based stats. Identities = 120/184 (65%), Positives = 140/184 (76%), Gaps = 3/184 (1%) Query: 1 MGLT-TVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMT 59 MG+ T++ + + +E D + + KG++ TSVD L+ WARTGS+ MT Sbjct: 8 MGVIQTLDSLMTNPMPEGRVE--DILRPEGENPLLEKGYVTTSVDALLNWARTGSMWPMT 65 Query: 60 FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119 FGLACCAVEMM A R DL+R+G R SPRQSDVMIVAGTL NKMA ALR+VYDQMP+ Sbjct: 66 FGLACCAVEMMHAGASRLDLDRYGVVFRPSPRQSDVMIVAGTLVNKMAPALRKVYDQMPD 125 Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179 P++VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQKKI R Sbjct: 126 PKWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALVYGILQLQKKIWR 185 Query: 180 VGNV 183 + Sbjct: 186 TQTI 189 >gi|255732844|ref|XP_002551345.1| NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial precursor [Candida tropicalis MYA-3404] gi|240131086|gb|EER30647.1| NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial precursor [Candida tropicalis MYA-3404] Length = 212 Score = 240 bits (613), Expect = 6e-62, Method: Composition-based stats. Identities = 108/169 (63%), Positives = 131/169 (77%), Gaps = 2/169 (1%) Query: 18 SLEKVDADFSRISSE--ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMP 75 + + + DF +S + +++TS+D + WAR S +TFGLACCAVEMM S P Sbjct: 39 TPQTLPTDFPLMSEKKATNAADYVLTSLDAIANWARKSSFWPVTFGLACCAVEMMHVSAP 98 Query: 76 RYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY 135 RYD +R G RASPRQSD+MIVAGTLTNKMA ALR+VYDQMP+P++VISMGSCANGGGY Sbjct: 99 RYDQDRLGIIFRASPRQSDIMIVAGTLTNKMAPALRQVYDQMPDPKWVISMGSCANGGGY 158 Query: 136 YHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 YHYSYSVVRGCDR+VPVDIYVPGCPPTAEAL+YG+ LQKK+ + + Sbjct: 159 YHYSYSVVRGCDRVVPVDIYVPGCPPTAEALMYGVFQLQKKMMKTRITR 207 >gi|58582858|ref|YP_201874.1| NADH dehydrogenase subunit B [Xanthomonas oryzae pv. oryzae KACC10331] gi|84624723|ref|YP_452095.1| NADH dehydrogenase subunit B [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|166712613|ref|ZP_02243820.1| NADH dehydrogenase subunit B [Xanthomonas oryzae pv. oryzicola BLS256] gi|58427452|gb|AAW76489.1| NADH-ubiquinone oxidoreductase NQO6 subunit [Xanthomonas oryzae pv. oryzae KACC10331] gi|84368663|dbj|BAE69821.1| NADH-ubiquinone oxidoreductase NQO6 subunit [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 191 Score = 240 bits (613), Expect = 7e-62, Method: Composition-based stats. Identities = 120/184 (65%), Positives = 141/184 (76%), Gaps = 3/184 (1%) Query: 1 MGLT-TVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMT 59 MG+ T+++ + + +E D + + KG++ TSVD L+ WARTGS+ MT Sbjct: 8 MGVIQTLDRLMTNPMPEGRVE--DILRPEGENPLLEKGYVTTSVDALLNWARTGSMWPMT 65 Query: 60 FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119 FGLACCAVEMM A R DL+R+G R SPRQSDVMIVAGTL NKMA ALR+VYDQMP+ Sbjct: 66 FGLACCAVEMMHAGASRLDLDRYGVVFRPSPRQSDVMIVAGTLVNKMAPALRKVYDQMPD 125 Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179 P++VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQKKI R Sbjct: 126 PKWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALVYGILQLQKKIWR 185 Query: 180 VGNV 183 + Sbjct: 186 TQTI 189 >gi|298370383|ref|ZP_06981699.1| NADH dehydrogenase (ubiquinone), B subunit [Neisseria sp. oral taxon 014 str. F0314] gi|298281843|gb|EFI23332.1| NADH dehydrogenase (ubiquinone), B subunit [Neisseria sp. oral taxon 014 str. F0314] Length = 197 Score = 240 bits (613), Expect = 7e-62, Method: Composition-based stats. Identities = 109/151 (72%), Positives = 128/151 (84%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 + KGF+ TS D ++ + RTGSL +TFGLACCAVEMM A M RYDL+RFG R SPRQ Sbjct: 43 VLKKGFITTSADTVLNYMRTGSLWPVTFGLACCAVEMMHAGMARYDLDRFGIIFRPSPRQ 102 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 +D+MIVAGTLTNKMA ALRRVYDQ+ EPR+V+SMGSCANGGGYYHYSYSVVRG DR+VPV Sbjct: 103 ADLMIVAGTLTNKMAPALRRVYDQLAEPRWVLSMGSCANGGGYYHYSYSVVRGADRVVPV 162 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 D+YVPGCPPTAEALIYG++ LQ+KI+R + Sbjct: 163 DVYVPGCPPTAEALIYGLMQLQQKIKRTSTI 193 >gi|302679558|ref|XP_003029461.1| hypothetical protein SCHCODRAFT_69693 [Schizophyllum commune H4-8] gi|300103151|gb|EFI94558.1| hypothetical protein SCHCODRAFT_69693 [Schizophyllum commune H4-8] Length = 236 Score = 240 bits (613), Expect = 7e-62, Method: Composition-based stats. Identities = 107/173 (61%), Positives = 133/173 (76%) Query: 10 IISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEM 69 + GQS ++ ++ + + +++ + D++ WAR S+ +TFGLACCAVEM Sbjct: 57 VEKGQSFRAVVNAQSNQHSLETPQNKAEYVLATFDKIANWARQSSMWPVTFGLACCAVEM 116 Query: 70 MQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSC 129 M + RYD +R G RASPRQS++MIVAGTLTNKMA ALR+VYDQMPEPR+V+SMGSC Sbjct: 117 MHMAAARYDQDRLGIIFRASPRQSEIMIVAGTLTNKMAPALRKVYDQMPEPRWVVSMGSC 176 Query: 130 ANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182 ANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG+L LQ+K+RR Sbjct: 177 ANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGMLQLQRKMRRSRK 229 >gi|15836909|ref|NP_297597.1| NADH dehydrogenase subunit B [Xylella fastidiosa 9a5c] gi|9105129|gb|AAF83117.1|AE003884_2 NADH-ubiquinone oxidoreductase, NQO6 subunit [Xylella fastidiosa 9a5c] Length = 191 Score = 240 bits (613), Expect = 7e-62, Method: Composition-based stats. Identities = 118/182 (64%), Positives = 138/182 (75%), Gaps = 1/182 (0%) Query: 1 MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTF 60 MG+ ++++ + D + S + KG++ TSVD L+ WARTGS+ MTF Sbjct: 8 MGVIQAIDRLMTNPIPDG-QVDDILRPQGESPLLQKGYVTTSVDALLNWARTGSMWPMTF 66 Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 GLACCAVEMM A R DL+R+G R SPRQSDVMIVAGTL NKMA ALR+VYDQMP+P Sbjct: 67 GLACCAVEMMHAGAARLDLDRYGIVFRPSPRQSDVMIVAGTLVNKMAPALRKVYDQMPDP 126 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 ++VISMGSCANGGGYYHYSYSVVRGCDRIVPVD+YVPGCPPTAEAL+YGIL LQKKI R Sbjct: 127 KWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALVYGILQLQKKIWRT 186 Query: 181 GN 182 Sbjct: 187 QT 188 >gi|255956935|ref|XP_002569220.1| Pc21g22510 [Penicillium chrysogenum Wisconsin 54-1255] gi|211590931|emb|CAP97148.1| Pc21g22510 [Penicillium chrysogenum Wisconsin 54-1255] Length = 222 Score = 240 bits (612), Expect = 7e-62, Method: Composition-based stats. Identities = 109/147 (74%), Positives = 126/147 (85%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 +++TS+D + WAR GSL ++FGLACCAVEMM SMPRYD +R G RASPRQSDVMI Sbjct: 71 YVLTSLDGIANWARQGSLWPLSFGLACCAVEMMHLSMPRYDQDRLGIIFRASPRQSDVMI 130 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGT+TNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRG DR++PVDIY+P Sbjct: 131 VAGTVTNKMAPALRQVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGVDRLIPVDIYLP 190 Query: 158 GCPPTAEALIYGILLLQKKIRRVGNVK 184 GCPPTAEAL+YGI LQKK+RR + Sbjct: 191 GCPPTAEALMYGIFQLQKKMRRTRITR 217 >gi|119172964|ref|XP_001239009.1| NADH-ubiquinone oxidoreductase subunit [Coccidioides immitis RS] Length = 213 Score = 240 bits (612), Expect = 7e-62, Method: Composition-based stats. Identities = 109/181 (60%), Positives = 136/181 (75%), Gaps = 4/181 (2%) Query: 4 TTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLA 63 T + ++ S S +L+ V D + + +T+ D LV WAR GSL ++FGLA Sbjct: 32 TYIQRQPSSTWSGNALKPVKHD----AEKGAPLQHFLTTTDNLVNWARQGSLWPLSFGLA 87 Query: 64 CCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYV 123 CC VEMM ASMPRYD +R G RASPRQ+DVM+VAGT+TNKMA ALR +YDQMP+P++V Sbjct: 88 CCGVEMMSASMPRYDQDRLGIIFRASPRQADVMLVAGTVTNKMAPALRLLYDQMPDPKWV 147 Query: 124 ISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 ISMGSCANGGGYYHYSYSV+RG DRI+PVDIYVPGCPPT EAL+YG+ LLQK++R+ Sbjct: 148 ISMGSCANGGGYYHYSYSVLRGVDRIIPVDIYVPGCPPTPEALLYGVFLLQKRMRKTRIT 207 Query: 184 K 184 + Sbjct: 208 R 208 >gi|58267664|ref|XP_570988.1| hypothetical protein [Cryptococcus neoformans var. neoformans JEC21] gi|57227222|gb|AAW43681.1| conserved hypothetical protein [Cryptococcus neoformans var. neoformans JEC21] Length = 250 Score = 240 bits (612), Expect = 7e-62, Method: Composition-based stats. Identities = 108/180 (60%), Positives = 136/180 (75%) Query: 2 GLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFG 61 + + + + ++ + ++ + + ++++++D++V W R GS+ MTFG Sbjct: 63 AINSYDHSPSTTLPDTTIAQQKSNQLSLETPRNGAEYVLSTLDKIVNWGRQGSMWPMTFG 122 Query: 62 LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPR 121 LACCAVEMM + RYD +R G RASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPR Sbjct: 123 LACCAVEMMHMAAARYDQDRLGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPR 182 Query: 122 YVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181 +VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG+L L +K+RR Sbjct: 183 WVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGMLQLMRKMRRNR 242 >gi|134112065|ref|XP_775568.1| hypothetical protein CNBE2820 [Cryptococcus neoformans var. neoformans B-3501A] gi|50258227|gb|EAL20921.1| hypothetical protein CNBE2820 [Cryptococcus neoformans var. neoformans B-3501A] Length = 250 Score = 240 bits (612), Expect = 7e-62, Method: Composition-based stats. Identities = 108/180 (60%), Positives = 136/180 (75%) Query: 2 GLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFG 61 + + + + ++ + ++ + + ++++++D++V W R GS+ MTFG Sbjct: 63 AINSYDHSPSTTLPDTTIAQQKSNQLSLETPRNGAEYVLSTLDKIVNWGRQGSMWPMTFG 122 Query: 62 LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPR 121 LACCAVEMM + RYD +R G RASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPR Sbjct: 123 LACCAVEMMHMAAARYDQDRLGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPR 182 Query: 122 YVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181 +VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG+L L +K+RR Sbjct: 183 WVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGMLQLMRKMRRNR 242 >gi|145612619|ref|XP_001412223.1| mitochondrial NADH-ubiquinone oxidoreductase 20 kD subunit [Magnaporthe oryzae 70-15] gi|145019756|gb|EDK03984.1| mitochondrial NADH-ubiquinone oxidoreductase 20 kD subunit [Magnaporthe oryzae 70-15] Length = 222 Score = 240 bits (612), Expect = 7e-62, Method: Composition-based stats. Identities = 115/178 (64%), Positives = 135/178 (75%), Gaps = 3/178 (1%) Query: 10 IISGQSSCSLEKVDADFSRISSEITHKGFL---VTSVDQLVTWARTGSLMWMTFGLACCA 66 + + QSS L + + + S+ KG + +T++D + W R SL MTFGLACCA Sbjct: 40 VPAAQSSTGLARPERKEVPLPSQEGTKGVVQYALTTLDIIANWGRQSSLWPMTFGLACCA 99 Query: 67 VEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISM 126 VEMM S PRYD +R G RASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPR+VISM Sbjct: 100 VEMMHLSTPRYDQDRLGIIFRASPRQSDVMIVAGTLTNKMAPALRQVYDQMPEPRWVISM 159 Query: 127 GSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 GSCANGGGYYHYSYSVVRGCDRIVPVD+YVPGCPPT+EAL+YGI LQ+K+R + Sbjct: 160 GSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTSEALMYGIFQLQRKMRNTKITR 217 >gi|67642191|ref|ZP_00440951.1| NADH-quinone oxidoreductase chain b (nadh dehydrogenasei, chain b) (ndh-1, chain b) [Burkholderia mallei GB8 horse 4] gi|217420025|ref|ZP_03451531.1| NADH-quinone oxidoreductase, B subunit [Burkholderia pseudomallei 576] gi|226195363|ref|ZP_03790952.1| NADH-quinone oxidoreductase, B subunit [Burkholderia pseudomallei Pakistan 9] gi|237811583|ref|YP_002896034.1| NADH-quinone oxidoreductase, b subunit [Burkholderia pseudomallei MSHR346] gi|242316907|ref|ZP_04815923.1| NADH-quinone oxidoreductase, B subunit [Burkholderia pseudomallei 1106b] gi|217397329|gb|EEC37345.1| NADH-quinone oxidoreductase, B subunit [Burkholderia pseudomallei 576] gi|225932565|gb|EEH28563.1| NADH-quinone oxidoreductase, B subunit [Burkholderia pseudomallei Pakistan 9] gi|237506251|gb|ACQ98569.1| NADH-quinone oxidoreductase, b subunit [Burkholderia pseudomallei MSHR346] gi|238523287|gb|EEP86726.1| NADH-quinone oxidoreductase chain b (nadh dehydrogenasei, chain b) (ndh-1, chain b) [Burkholderia mallei GB8 horse 4] gi|242140146|gb|EES26548.1| NADH-quinone oxidoreductase, B subunit [Burkholderia pseudomallei 1106b] Length = 153 Score = 240 bits (612), Expect = 8e-62, Method: Composition-based stats. Identities = 114/150 (76%), Positives = 126/150 (84%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93 +GF+ T+ D+L+ W RTGSL MTFGLACCAVEMM A RYDL+RFG R SPRQS Sbjct: 1 MKEGFVTTTADKLINWTRTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGVVFRPSPRQS 60 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD 153 DVMIVAGTL NKMA ALRRVYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVD Sbjct: 61 DVMIVAGTLCNKMAPALRRVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVD 120 Query: 154 IYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 +YVPGCPPTAEAL+YG++ LQ KIRR + Sbjct: 121 VYVPGCPPTAEALVYGVIQLQAKIRRTSTI 150 >gi|78048408|ref|YP_364583.1| NADH dehydrogenase subunit B [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|294624677|ref|ZP_06703347.1| NADH dehydrogenase beta subunit [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|294666776|ref|ZP_06732010.1| NADH dehydrogenase beta subunit [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|325924676|ref|ZP_08186114.1| NADH dehydrogenase subunit B [Xanthomonas perforans 91-118] gi|123584672|sp|Q3BRN0|NUOB_XANC5 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|238065262|sp|Q8PJ41|NUOB_XANAC RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|78036838|emb|CAJ24531.1| NADH-ubiquinone oxidoreductase NQO6 subunit [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|292601033|gb|EFF45100.1| NADH dehydrogenase beta subunit [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292603437|gb|EFF46854.1| NADH dehydrogenase beta subunit [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|325544882|gb|EGD16227.1| NADH dehydrogenase subunit B [Xanthomonas perforans 91-118] Length = 184 Score = 240 bits (612), Expect = 8e-62, Method: Composition-based stats. Identities = 120/184 (65%), Positives = 140/184 (76%), Gaps = 3/184 (1%) Query: 1 MGLT-TVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMT 59 MG+ T++ + + +E D + + KG++ TSVD L+ WARTGS+ MT Sbjct: 1 MGVIQTLDSLMTNPMPEGRVE--DILRPEGENPLLEKGYVTTSVDALLNWARTGSMWPMT 58 Query: 60 FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119 FGLACCAVEMM A R DL+R+G R SPRQSDVMIVAGTL NKMA ALR+VYDQMP+ Sbjct: 59 FGLACCAVEMMHAGASRLDLDRYGVVFRPSPRQSDVMIVAGTLVNKMAPALRKVYDQMPD 118 Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179 P++VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQKKI R Sbjct: 119 PKWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALVYGILQLQKKIWR 178 Query: 180 VGNV 183 + Sbjct: 179 TQTI 182 >gi|224284596|gb|ACN40031.1| unknown [Picea sitchensis] Length = 205 Score = 240 bits (612), Expect = 8e-62, Method: Composition-based stats. Identities = 116/179 (64%), Positives = 130/179 (72%) Query: 5 TVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLAC 64 TV S SL + ++++ +D LV WAR GS+ MTFGLAC Sbjct: 21 TVAPTKAEAAGSSSLSAPTPYNPSATGLSKPAEYVISKIDALVNWARKGSIWPMTFGLAC 80 Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 CAVEMM RYDL+RFG R SPRQSD MIVAGTLTNKMA ALR+VYDQMPEPR+VI Sbjct: 81 CAVEMMHTGAARYDLDRFGIIFRPSPRQSDCMIVAGTLTNKMAPALRKVYDQMPEPRWVI 140 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 SMGSCANGG YYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG+L LQKKI R ++ Sbjct: 141 SMGSCANGGRYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGLLQLQKKIHRRKDL 199 >gi|302753456|ref|XP_002960152.1| hypothetical protein SELMODRAFT_270168 [Selaginella moellendorffii] gi|302804466|ref|XP_002983985.1| hypothetical protein SELMODRAFT_156186 [Selaginella moellendorffii] gi|300148337|gb|EFJ14997.1| hypothetical protein SELMODRAFT_156186 [Selaginella moellendorffii] gi|300171091|gb|EFJ37691.1| hypothetical protein SELMODRAFT_270168 [Selaginella moellendorffii] Length = 200 Score = 240 bits (612), Expect = 8e-62, Method: Composition-based stats. Identities = 108/147 (73%), Positives = 124/147 (84%) Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVM 96 F+++ +D ++ + R GS+ MTFGLACCAVEMM RYDL+RFG R SPRQSD M Sbjct: 48 NFVISKLDSVINYVRAGSIWPMTFGLACCAVEMMHTGAARYDLDRFGMIFRPSPRQSDCM 107 Query: 97 IVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV 156 IVAGTLTNKMA ALRRVYDQMPEPR+V+SMGSCANGGGYYHYSY+VVRGCDRIVPVDIYV Sbjct: 108 IVAGTLTNKMAPALRRVYDQMPEPRWVVSMGSCANGGGYYHYSYAVVRGCDRIVPVDIYV 167 Query: 157 PGCPPTAEALIYGILLLQKKIRRVGNV 183 PGCPPTAEAL+YG+L LQKKI+R + Sbjct: 168 PGCPPTAEALLYGLLQLQKKIKRRKQI 194 >gi|261197135|ref|XP_002624970.1| NADH-ubiquinone oxidoreductase subunit B [Ajellomyces dermatitidis SLH14081] gi|239595600|gb|EEQ78181.1| NADH-ubiquinone oxidoreductase subunit B [Ajellomyces dermatitidis SLH14081] gi|239606495|gb|EEQ83482.1| NADH-ubiquinone oxidoreductase subunit B [Ajellomyces dermatitidis ER-3] gi|327356325|gb|EGE85182.1| NADH-ubiquinone oxidoreductase subunit B [Ajellomyces dermatitidis ATCC 18188] Length = 223 Score = 240 bits (612), Expect = 8e-62, Method: Composition-based stats. Identities = 111/165 (67%), Positives = 128/165 (77%) Query: 20 EKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDL 79 +++ ++ F +T++DQ+ WAR SL MTFGLACCAVEMM S PRYD Sbjct: 54 PRIEVPLPSQEKKVGAMQFALTTLDQVTNWARQSSLWPMTFGLACCAVEMMHLSTPRYDQ 113 Query: 80 ERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS 139 +R G RASPRQSDVMIVAGTLTNKMA ALR+VYDQMP+PR+VISMGSCANGGGYYHYS Sbjct: 114 DRLGIIFRASPRQSDVMIVAGTLTNKMAPALRQVYDQMPDPRWVISMGSCANGGGYYHYS 173 Query: 140 YSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 YSV RGCDRIVPVDIYVPGCPPT+EAL+YGI LQKK+R + Sbjct: 174 YSVTRGCDRIVPVDIYVPGCPPTSEALMYGIFQLQKKMRHTRITR 218 >gi|289665174|ref|ZP_06486755.1| NADH dehydrogenase subunit B [Xanthomonas campestris pv. vasculorum NCPPB702] gi|289667379|ref|ZP_06488454.1| NADH dehydrogenase subunit B [Xanthomonas campestris pv. musacearum NCPPB4381] gi|238065260|sp|Q5GXT2|NUOB_XANOR RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|238065261|sp|Q2P0V6|NUOB_XANOM RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B Length = 184 Score = 240 bits (612), Expect = 9e-62, Method: Composition-based stats. Identities = 120/184 (65%), Positives = 141/184 (76%), Gaps = 3/184 (1%) Query: 1 MGLT-TVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMT 59 MG+ T+++ + + +E D + + KG++ TSVD L+ WARTGS+ MT Sbjct: 1 MGVIQTLDRLMTNPMPEGRVE--DILRPEGENPLLEKGYVTTSVDALLNWARTGSMWPMT 58 Query: 60 FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119 FGLACCAVEMM A R DL+R+G R SPRQSDVMIVAGTL NKMA ALR+VYDQMP+ Sbjct: 59 FGLACCAVEMMHAGASRLDLDRYGVVFRPSPRQSDVMIVAGTLVNKMAPALRKVYDQMPD 118 Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179 P++VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQKKI R Sbjct: 119 PKWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALVYGILQLQKKIWR 178 Query: 180 VGNV 183 + Sbjct: 179 TQTI 182 >gi|218528068|sp|Q9PGJ4|NUOB_XYLFA RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B Length = 184 Score = 240 bits (612), Expect = 9e-62, Method: Composition-based stats. Identities = 118/182 (64%), Positives = 138/182 (75%), Gaps = 1/182 (0%) Query: 1 MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTF 60 MG+ ++++ + D + S + KG++ TSVD L+ WARTGS+ MTF Sbjct: 1 MGVIQAIDRLMTNPIPDG-QVDDILRPQGESPLLQKGYVTTSVDALLNWARTGSMWPMTF 59 Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 GLACCAVEMM A R DL+R+G R SPRQSDVMIVAGTL NKMA ALR+VYDQMP+P Sbjct: 60 GLACCAVEMMHAGAARLDLDRYGIVFRPSPRQSDVMIVAGTLVNKMAPALRKVYDQMPDP 119 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 ++VISMGSCANGGGYYHYSYSVVRGCDRIVPVD+YVPGCPPTAEAL+YGIL LQKKI R Sbjct: 120 KWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALVYGILQLQKKIWRT 179 Query: 181 GN 182 Sbjct: 180 QT 181 >gi|326489346|dbj|BAK01656.1| predicted protein [Hordeum vulgare subsp. vulgare] gi|326511367|dbj|BAJ87697.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 201 Score = 240 bits (612), Expect = 9e-62, Method: Composition-based stats. Identities = 114/144 (79%), Positives = 123/144 (85%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 F+V+ VD L+ WAR GS+ MTFGLACCAVEMM A RYD +RFG R SPRQSD MI Sbjct: 50 FVVSKVDDLMNWARRGSIWPMTFGLACCAVEMMHAGAARYDFDRFGVIFRPSPRQSDCMI 109 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP Sbjct: 110 VAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 169 Query: 158 GCPPTAEALIYGILLLQKKIRRVG 181 GCPPTAEAL+YG+L LQKKI R Sbjct: 170 GCPPTAEALLYGVLQLQKKINRRK 193 >gi|21231959|ref|NP_637876.1| NADH dehydrogenase subunit B [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66767914|ref|YP_242676.1| NADH dehydrogenase subunit B [Xanthomonas campestris pv. campestris str. 8004] gi|188991030|ref|YP_001903040.1| NADH dehydrogenase subunit B [Xanthomonas campestris pv. campestris str. B100] gi|21113690|gb|AAM41800.1| NADH-ubiquinone oxidoreductase NQO6 subunit [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66573246|gb|AAY48656.1| NADH-ubiquinone oxidoreductase NQO6 subunit [Xanthomonas campestris pv. campestris str. 8004] gi|167732790|emb|CAP50984.1| NADH-ubiquinone oxidoreductase NQO6 subunit [Xanthomonas campestris pv. campestris] Length = 191 Score = 239 bits (611), Expect = 1e-61, Method: Composition-based stats. Identities = 120/184 (65%), Positives = 141/184 (76%), Gaps = 3/184 (1%) Query: 1 MGLT-TVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMT 59 MG+ T+++ + + +E D + + KG++ TSVD L+ WARTGS+ MT Sbjct: 8 MGVIQTLDRLMTNPMPEGRVE--DILRPEGENPLLEKGYVTTSVDALLNWARTGSMWPMT 65 Query: 60 FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119 FGLACCAVEMM A R DL+R+G R SPRQSDVMIVAGTL NKMA ALR+VYDQMP+ Sbjct: 66 FGLACCAVEMMHAGAARLDLDRYGVVFRPSPRQSDVMIVAGTLVNKMAPALRKVYDQMPD 125 Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179 P++VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQKKI R Sbjct: 126 PKWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALVYGILQLQKKIWR 185 Query: 180 VGNV 183 + Sbjct: 186 TQTI 189 >gi|225559531|gb|EEH07814.1| NADH-ubiquinone oxidoreductase [Ajellomyces capsulatus G186AR] Length = 228 Score = 239 bits (611), Expect = 1e-61, Method: Composition-based stats. Identities = 117/183 (63%), Positives = 135/183 (73%), Gaps = 2/183 (1%) Query: 4 TTVNQKIISGQSSCSLEKVDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFG 61 T V + + +K+ +F S E + +T++DQ+ WAR GSL MTFG Sbjct: 41 TEVEKHEYGSAPLTATDKLRREFPLPSQEKEGGAMQYALTTLDQVTNWARQGSLWPMTFG 100 Query: 62 LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPR 121 LACCAVEMM S PRYD +R G RASPRQSDVMIVAGTLTNKMA ALR+VYDQMP+PR Sbjct: 101 LACCAVEMMHLSTPRYDQDRLGIIFRASPRQSDVMIVAGTLTNKMAPALRQVYDQMPDPR 160 Query: 122 YVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181 +VISMGSCANGGGYYHYSYSV RGCDRIVPVDIYVPGCPPT+EAL+YGI LQKK+R Sbjct: 161 WVISMGSCANGGGYYHYSYSVTRGCDRIVPVDIYVPGCPPTSEALMYGIFQLQKKMRHTR 220 Query: 182 NVK 184 + Sbjct: 221 ITR 223 >gi|319787442|ref|YP_004146917.1| NADH-quinone oxidoreductase subunit beta [Pseudoxanthomonas suwonensis 11-1] gi|317465954|gb|ADV27686.1| NADH-quinone oxidoreductase, B subunit [Pseudoxanthomonas suwonensis 11-1] Length = 192 Score = 239 bits (611), Expect = 1e-61, Method: Composition-based stats. Identities = 123/185 (66%), Positives = 140/185 (75%), Gaps = 5/185 (2%) Query: 1 MGLTTVNQKIISGQSSCSLEKVDADFSRISSE--ITHKGFLVTSVDQLVTWARTGSLMWM 58 MG+ ++++ E D R + E + KG++ TSVD LV WARTGS+ M Sbjct: 1 MGVIQTIDRLMTNP---MPEARVEDILRPAGENPLLEKGYVTTSVDALVNWARTGSMWPM 57 Query: 59 TFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMP 118 TFGLACCAVEMM A R DL+R+G R SPRQSDVMIVAGTL NKMA ALR+VYDQMP Sbjct: 58 TFGLACCAVEMMHAGAARLDLDRYGVVFRPSPRQSDVMIVAGTLVNKMAPALRKVYDQMP 117 Query: 119 EPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 +P++VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQKKI Sbjct: 118 DPKWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALVYGILQLQKKIW 177 Query: 179 RVGNV 183 R V Sbjct: 178 RTQTV 182 >gi|217075608|gb|ACJ86164.1| unknown [Medicago truncatula] Length = 198 Score = 239 bits (611), Expect = 1e-61, Method: Composition-based stats. Identities = 111/140 (79%), Positives = 123/140 (87%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 ++++ VD L+ WARTGS+ MTFGLACCAVEMM RYDL+RFG R SPRQSD MI Sbjct: 59 YVISKVDNLMNWARTGSIWPMTFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDCMI 118 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGTLTNKMA ALR+VYDQMPEPR+V+SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP Sbjct: 119 VAGTLTNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 178 Query: 158 GCPPTAEALIYGILLLQKKI 177 GCPPTAEAL+YG+L LQKKI Sbjct: 179 GCPPTAEALLYGLLQLQKKI 198 >gi|313227729|emb|CBY22878.1| unnamed protein product [Oikopleura dioica] Length = 228 Score = 239 bits (611), Expect = 1e-61, Method: Composition-based stats. Identities = 111/163 (68%), Positives = 128/163 (78%) Query: 21 KVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLE 80 + + RI ++ T +D + + SL MTFGLACCAVEMM + PRYD++ Sbjct: 36 PIKREADRIKKFDNKVEYVTTKLDDIKNYISANSLWPMTFGLACCAVEMMHFAAPRYDMD 95 Query: 81 RFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSY 140 RFG RASPRQSD+MIVAGTL+NKMA ALRRVYDQMP PRYV+SMGSCANGGGYYHYSY Sbjct: 96 RFGVVFRASPRQSDLMIVAGTLSNKMAPALRRVYDQMPFPRYVLSMGSCANGGGYYHYSY 155 Query: 141 SVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 SVVRG DRIVPVD+YVPGCPP+AEAL+YGILLLQKKI+R NV Sbjct: 156 SVVRGVDRIVPVDVYVPGCPPSAEALLYGILLLQKKIKRSANV 198 >gi|112434059|gb|ABI18374.1| NADH-quinone oxidoreductase chain B [Ehrlichia ruminantium] Length = 172 Score = 239 bits (611), Expect = 1e-61, Method: Composition-based stats. Identities = 115/153 (75%), Positives = 127/153 (83%), Gaps = 4/153 (2%) Query: 34 THKGFLVTSVDQLVT----WARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS 89 H+GF+VT L+ WAR+ SL MTFGLACCAVEMM + RYDL+R+G RAS Sbjct: 18 NHRGFMVTKFSDLINYVSSWARSNSLWPMTFGLACCAVEMMHTAASRYDLDRYGVMFRAS 77 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQ+DVMIVAGTLTNKMA ALR+VYDQM EPRYVISMGSCANGGGYYHYSYSVVRGCDRI Sbjct: 78 PRQADVMIVAGTLTNKMAPALRKVYDQMTEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 137 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182 VPVDIYVPGCPPTAEAL+YGIL LQ+KI R + Sbjct: 138 VPVDIYVPGCPPTAEALLYGILCLQQKINRTAS 170 >gi|325921410|ref|ZP_08183267.1| NADH dehydrogenase subunit B [Xanthomonas gardneri ATCC 19865] gi|325548168|gb|EGD19165.1| NADH dehydrogenase subunit B [Xanthomonas gardneri ATCC 19865] Length = 184 Score = 239 bits (611), Expect = 1e-61, Method: Composition-based stats. Identities = 118/184 (64%), Positives = 139/184 (75%), Gaps = 3/184 (1%) Query: 1 MGLTTVNQKIISGQSSCSLEKVDADF-SRISSEITHKGFLVTSVDQLVTWARTGSLMWMT 59 MG+ ++++ ++D + + KG++ TSVD L+ WARTGS+ MT Sbjct: 1 MGVIQTLDRLMTNP--MPEGRLDDILRPEGENPLLEKGYVTTSVDALLNWARTGSMWPMT 58 Query: 60 FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119 FGLACCAVEMM A R DL+R+G R SPRQSDVMIVAGTL NKMA ALR+VYDQMP+ Sbjct: 59 FGLACCAVEMMHAGAARLDLDRYGVVFRPSPRQSDVMIVAGTLVNKMAPALRKVYDQMPD 118 Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179 P++VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQKKI R Sbjct: 119 PKWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALVYGILQLQKKIWR 178 Query: 180 VGNV 183 + Sbjct: 179 TQTI 182 >gi|240272844|gb|EER36371.1| NADH-ubiquinone oxidoreductase [Ajellomyces capsulatus H143] gi|325088617|gb|EGC41927.1| NADH-ubiquinone oxidoreductase [Ajellomyces capsulatus H88] Length = 228 Score = 239 bits (611), Expect = 1e-61, Method: Composition-based stats. Identities = 112/173 (64%), Positives = 130/173 (75%) Query: 12 SGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQ 71 + ++ + + E + +T++DQ+ WAR GSL MTFGLACCAVEMM Sbjct: 51 APLTATGKLRREVPLPSQEKEGGAMQYALTTLDQVTNWARQGSLWPMTFGLACCAVEMMH 110 Query: 72 ASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCAN 131 S PRYD +R G RASPRQSDVMIVAGTLTNKMA ALR+VYDQMP+PR+VISMGSCAN Sbjct: 111 LSTPRYDQDRLGIIFRASPRQSDVMIVAGTLTNKMAPALRQVYDQMPDPRWVISMGSCAN 170 Query: 132 GGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 GGGYYHYSYSV RGCDRIVPVDIYVPGCPPT+EAL+YGI LQKK+R + Sbjct: 171 GGGYYHYSYSVTRGCDRIVPVDIYVPGCPPTSEALMYGIFQLQKKMRHTRITR 223 >gi|71897767|ref|ZP_00679993.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit [Xylella fastidiosa Ann-1] gi|71732322|gb|EAO34376.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit [Xylella fastidiosa Ann-1] Length = 184 Score = 239 bits (611), Expect = 1e-61, Method: Composition-based stats. Identities = 119/184 (64%), Positives = 139/184 (75%), Gaps = 3/184 (1%) Query: 1 MGLTTVNQKIISGQSSCSLEKVDADF-SRISSEITHKGFLVTSVDQLVTWARTGSLMWMT 59 MG+ ++++ VD + S + KG++ TSVD L+ WARTGS+ MT Sbjct: 1 MGVIQAIDRLMTNP--IPDGHVDDILRPQGESPLLQKGYVTTSVDALLNWARTGSMWPMT 58 Query: 60 FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119 FGLACCAVEMM A R DL+R+G R SPRQSDVMIVAGTL NKMA ALR+VYDQMP+ Sbjct: 59 FGLACCAVEMMHAGAARLDLDRYGIVFRPSPRQSDVMIVAGTLVNKMAPALRKVYDQMPD 118 Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179 P++VISMGSCANGGGYYHYSYSVVRGCDRIVPVD+YVPGCPPTAEAL+YGIL LQKKI R Sbjct: 119 PKWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALVYGILQLQKKIWR 178 Query: 180 VGNV 183 + Sbjct: 179 TQTI 182 >gi|18461218|dbj|BAB84415.1| putative NADH2 dehydrogenase (ubiquinone) chain PSST precursor [Oryza sativa Japonica Group] gi|125527525|gb|EAY75639.1| hypothetical protein OsI_03544 [Oryza sativa Indica Group] gi|222619176|gb|EEE55308.1| hypothetical protein OsJ_03280 [Oryza sativa Japonica Group] Length = 199 Score = 239 bits (611), Expect = 1e-61, Method: Composition-based stats. Identities = 113/155 (72%), Positives = 125/155 (80%) Query: 27 SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP 86 + + F+++ VD L+ WAR GS+ MTFGLACCAVEMM A RYD +RFG Sbjct: 37 PPPAPQSKAAEFVISKVDDLMNWARRGSIWPMTFGLACCAVEMMHAGASRYDFDRFGVIF 96 Query: 87 RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGC 146 R SPRQSD MIVAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGC Sbjct: 97 RPSPRQSDCMIVAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGC 156 Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181 DRIVPVDIYVPGCPPTAEAL+YG+L LQKKI R Sbjct: 157 DRIVPVDIYVPGCPPTAEALLYGVLQLQKKINRRK 191 >gi|291042878|ref|ZP_06568619.1| NADH-quinone oxidoreductase subunit B [Neisseria gonorrhoeae DGI2] gi|291013312|gb|EFE05278.1| NADH-quinone oxidoreductase subunit B [Neisseria gonorrhoeae DGI2] Length = 197 Score = 239 bits (611), Expect = 1e-61, Method: Composition-based stats. Identities = 109/151 (72%), Positives = 128/151 (84%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 + KGF+ TS D ++ + RTGSL +TFGLACCAVEMM A M RYDL+RFG R SPRQ Sbjct: 43 VLKKGFITTSADTVLNYMRTGSLWPVTFGLACCAVEMMHAGMARYDLDRFGIIFRPSPRQ 102 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 +D+MIVAGTLTNKMA ALRRVYDQ+ EPR+V+SMGSCANGGGYYHYSYSVVRG DR+VPV Sbjct: 103 ADLMIVAGTLTNKMAPALRRVYDQLAEPRWVLSMGSCANGGGYYHYSYSVVRGADRVVPV 162 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 D+YVPGCPPTAEALIYG++ LQ+KI+R + Sbjct: 163 DVYVPGCPPTAEALIYGLIQLQQKIKRTSTI 193 >gi|302879341|ref|YP_003847905.1| NADH-quinone oxidoreductase, B subunit [Gallionella capsiferriformans ES-2] gi|302582130|gb|ADL56141.1| NADH-quinone oxidoreductase, B subunit [Gallionella capsiferriformans ES-2] Length = 160 Score = 239 bits (610), Expect = 1e-61, Method: Composition-based stats. Identities = 113/151 (74%), Positives = 127/151 (84%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 I KG + T++D ++ + RTGSL MTFGLACCAVEMMQA RYDL+RFG R SPRQ Sbjct: 6 ILEKGVVTTTLDTIINYTRTGSLWPMTFGLACCAVEMMQAGASRYDLDRFGIVFRPSPRQ 65 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 SDVMIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPV Sbjct: 66 SDVMIVAGTLCNKMAPALRKVYDQMSEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPV 125 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 DIYVPGCPPTAEAL+YG++ LQ KI+R + Sbjct: 126 DIYVPGCPPTAEALLYGLIQLQNKIKRTNTI 156 >gi|255067282|ref|ZP_05319137.1| NADH dehydrogenase, B subunit [Neisseria sicca ATCC 29256] gi|261364348|ref|ZP_05977231.1| NADH dehydrogenase, B subunit [Neisseria mucosa ATCC 25996] gi|261378539|ref|ZP_05983112.1| NADH dehydrogenase, B subunit [Neisseria cinerea ATCC 14685] gi|255048433|gb|EET43897.1| NADH dehydrogenase, B subunit [Neisseria sicca ATCC 29256] gi|269145089|gb|EEZ71507.1| NADH dehydrogenase, B subunit [Neisseria cinerea ATCC 14685] gi|288567612|gb|EFC89172.1| NADH dehydrogenase, B subunit [Neisseria mucosa ATCC 25996] Length = 160 Score = 239 bits (610), Expect = 1e-61, Method: Composition-based stats. Identities = 109/151 (72%), Positives = 128/151 (84%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 + KGF+ TS D ++ + RTGSL +TFGLACCAVEMM A M RYDL+RFG R SPRQ Sbjct: 6 VLKKGFITTSADTVLNYMRTGSLWPVTFGLACCAVEMMHAGMARYDLDRFGIIFRPSPRQ 65 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 +D+MIVAGTLTNKMA ALRRVYDQ+ EPR+V+SMGSCANGGGYYHYSYSVVRG DR+VPV Sbjct: 66 ADLMIVAGTLTNKMAPALRRVYDQLAEPRWVLSMGSCANGGGYYHYSYSVVRGADRVVPV 125 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 D+YVPGCPPTAEALIYG++ LQ+KI+R + Sbjct: 126 DVYVPGCPPTAEALIYGLMQLQQKIKRTSTI 156 >gi|218528065|sp|Q4UWB7|NUOB_XANC8 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|218528066|sp|B0RR99|NUOB_XANCB RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|218528067|sp|Q8P7T3|NUOB_XANCP RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B Length = 184 Score = 239 bits (610), Expect = 1e-61, Method: Composition-based stats. Identities = 120/184 (65%), Positives = 141/184 (76%), Gaps = 3/184 (1%) Query: 1 MGLT-TVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMT 59 MG+ T+++ + + +E D + + KG++ TSVD L+ WARTGS+ MT Sbjct: 1 MGVIQTLDRLMTNPMPEGRVE--DILRPEGENPLLEKGYVTTSVDALLNWARTGSMWPMT 58 Query: 60 FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119 FGLACCAVEMM A R DL+R+G R SPRQSDVMIVAGTL NKMA ALR+VYDQMP+ Sbjct: 59 FGLACCAVEMMHAGAARLDLDRYGVVFRPSPRQSDVMIVAGTLVNKMAPALRKVYDQMPD 118 Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179 P++VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQKKI R Sbjct: 119 PKWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALVYGILQLQKKIWR 178 Query: 180 VGNV 183 + Sbjct: 179 TQTI 182 >gi|91789115|ref|YP_550067.1| NADH dehydrogenase subunit B [Polaromonas sp. JS666] gi|123164659|sp|Q127X3|NUOB_POLSJ RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|91698340|gb|ABE45169.1| NADH dehydrogenase subunit B [Polaromonas sp. JS666] Length = 159 Score = 239 bits (610), Expect = 1e-61, Method: Composition-based stats. Identities = 111/149 (74%), Positives = 127/149 (85%) Query: 35 HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSD 94 ++GF+ TS D +V WA+TGSL MTFGLACCAVEMM A RYD++RFG R SPRQSD Sbjct: 8 NEGFMTTSYDSVVNWAKTGSLWPMTFGLACCAVEMMHAGAARYDMDRFGMLFRPSPRQSD 67 Query: 95 VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154 +MIVAGTL NKM ALR+VYDQM EPR+V+SMGSCANGGGYYHYSYSVVRGCDRIVPVD+ Sbjct: 68 LMIVAGTLCNKMGPALRKVYDQMSEPRWVLSMGSCANGGGYYHYSYSVVRGCDRIVPVDV 127 Query: 155 YVPGCPPTAEALIYGILLLQKKIRRVGNV 183 YVPGCPPTAEAL+YGI+ LQ+KIRR + Sbjct: 128 YVPGCPPTAEALLYGIIQLQQKIRRTNTI 156 >gi|73666917|ref|YP_302933.1| NADH dehydrogenase subunit B [Ehrlichia canis str. Jake] gi|72394058|gb|AAZ68335.1| NADH dehydrogenase subunit B [Ehrlichia canis str. Jake] Length = 185 Score = 239 bits (610), Expect = 1e-61, Method: Composition-based stats. Identities = 115/150 (76%), Positives = 126/150 (84%), Gaps = 4/150 (2%) Query: 34 THKGFLVTSVDQLV----TWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS 89 H+GF+VT L+ WAR+ SL MTFGLACCAVEMM + RYDL+R+G RAS Sbjct: 21 NHQGFMVTQFSDLIDYISNWARSNSLWPMTFGLACCAVEMMHTAASRYDLDRYGIMFRAS 80 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQ+DVMIVAGTLTNKMA ALR+VYDQM EPRYVISMGSCANGGGYYHYSYSVVRGCDRI Sbjct: 81 PRQADVMIVAGTLTNKMAPALRKVYDQMTEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 140 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRR 179 VPVDIYVPGCPPTAEAL+YGIL LQ+KI R Sbjct: 141 VPVDIYVPGCPPTAEALLYGILCLQQKINR 170 >gi|15676166|ref|NP_273298.1| NADH dehydrogenase subunit B [Neisseria meningitidis MC58] gi|121634114|ref|YP_974359.1| NADH dehydrogenase subunit B [Neisseria meningitidis FAM18] gi|194099646|ref|YP_002002777.1| NADH dehydrogenase subunit B [Neisseria gonorrhoeae NCCP11945] gi|225077017|ref|ZP_03720216.1| hypothetical protein NEIFLAOT_02069 [Neisseria flavescens NRL30031/H210] gi|239999843|ref|ZP_04719767.1| NADH dehydrogenase subunit B [Neisseria gonorrhoeae 35/02] gi|240015002|ref|ZP_04721915.1| NADH dehydrogenase subunit B [Neisseria gonorrhoeae DGI18] gi|240081589|ref|ZP_04726132.1| NADH dehydrogenase subunit B [Neisseria gonorrhoeae FA19] gi|240113871|ref|ZP_04728361.1| NADH dehydrogenase subunit B [Neisseria gonorrhoeae MS11] gi|240116602|ref|ZP_04730664.1| NADH dehydrogenase subunit B [Neisseria gonorrhoeae PID18] gi|240118826|ref|ZP_04732888.1| NADH dehydrogenase subunit B [Neisseria gonorrhoeae PID1] gi|240122071|ref|ZP_04735033.1| NADH dehydrogenase subunit B [Neisseria gonorrhoeae PID24-1] gi|240124365|ref|ZP_04737321.1| NADH dehydrogenase subunit B [Neisseria gonorrhoeae PID332] gi|240126577|ref|ZP_04739463.1| NADH dehydrogenase subunit B [Neisseria gonorrhoeae SK-92-679] gi|241760743|ref|ZP_04758835.1| NADH-quinone oxidoreductase, b subunit [Neisseria flavescens SK114] gi|254494626|ref|ZP_05107797.1| NADH dehydrogenase subunit I B [Neisseria gonorrhoeae 1291] gi|254805716|ref|YP_003083937.1| NADH dehydrogenase I chain B [Neisseria meningitidis alpha14] gi|260439637|ref|ZP_05793453.1| NADH dehydrogenase subunit B [Neisseria gonorrhoeae DGI2] gi|261379579|ref|ZP_05984152.1| NADH dehydrogenase, B subunit [Neisseria subflava NJ9703] gi|261400470|ref|ZP_05986595.1| NADH dehydrogenase, B subunit [Neisseria lactamica ATCC 23970] gi|268595653|ref|ZP_06129820.1| NADH-quinone oxidoreductase subunit B [Neisseria gonorrhoeae 35/02] gi|268597685|ref|ZP_06131852.1| NADH-quinone oxidoreductase subunit B [Neisseria gonorrhoeae FA19] gi|268599937|ref|ZP_06134104.1| NADH dehydrogenase subunit I B [Neisseria gonorrhoeae MS11] gi|268602271|ref|ZP_06136438.1| NADH dehydrogenase subunit I B [Neisseria gonorrhoeae PID18] gi|268604537|ref|ZP_06138704.1| NADH dehydrogenase subunit I B [Neisseria gonorrhoeae PID1] gi|268682992|ref|ZP_06149854.1| NADH dehydrogenase subunit I B [Neisseria gonorrhoeae PID332] gi|268685157|ref|ZP_06152019.1| NADH dehydrogenase subunit I B [Neisseria gonorrhoeae SK-92-679] gi|296313746|ref|ZP_06863687.1| NADH dehydrogenase, B subunit [Neisseria polysaccharea ATCC 43768] gi|304389067|ref|ZP_07371111.1| NADH-quinone oxidoreductase subunit B [Neisseria meningitidis ATCC 13091] gi|313669285|ref|YP_004049569.1| NADH dehydrogenase I chain B [Neisseria lactamica ST-640] gi|319638815|ref|ZP_07993573.1| NADH dehydrogenase subunit I B [Neisseria mucosa C102] gi|81785111|sp|Q9K1C2|NUOB_NEIMB RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|218527996|sp|B4RPI3|NUOB_NEIG2 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|218527998|sp|A1KRS3|NUOB_NEIMF RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|7225464|gb|AAF40696.1| NADH dehydrogenase I, B subunit [Neisseria meningitidis MC58] gi|120865820|emb|CAM09552.1| NADH dehydrogenase I chain B [Neisseria meningitidis FAM18] gi|193934936|gb|ACF30760.1| NADH dehydrogenase I, B subunit [Neisseria gonorrhoeae NCCP11945] gi|224951574|gb|EEG32783.1| hypothetical protein NEIFLAOT_02069 [Neisseria flavescens NRL30031/H210] gi|226513666|gb|EEH63011.1| NADH dehydrogenase subunit I B [Neisseria gonorrhoeae 1291] gi|241318924|gb|EER55450.1| NADH-quinone oxidoreductase, b subunit [Neisseria flavescens SK114] gi|254669258|emb|CBA08154.1| NADH dehydrogenase I chain B [Neisseria meningitidis alpha14] gi|261391774|emb|CAX49229.1| NADH-quinone oxidoreductase chain B (NADH dehydrogenase I, chain B; NDH-1, chain B) [Neisseria meningitidis 8013] gi|268549042|gb|EEZ44460.1| NADH-quinone oxidoreductase subunit B [Neisseria gonorrhoeae 35/02] gi|268551473|gb|EEZ46492.1| NADH-quinone oxidoreductase subunit B [Neisseria gonorrhoeae FA19] gi|268584068|gb|EEZ48744.1| NADH dehydrogenase subunit I B [Neisseria gonorrhoeae MS11] gi|268586402|gb|EEZ51078.1| NADH dehydrogenase subunit I B [Neisseria gonorrhoeae PID18] gi|268588668|gb|EEZ53344.1| NADH dehydrogenase subunit I B [Neisseria gonorrhoeae PID1] gi|268623276|gb|EEZ55676.1| NADH dehydrogenase subunit I B [Neisseria gonorrhoeae PID332] gi|268625441|gb|EEZ57841.1| NADH dehydrogenase subunit I B [Neisseria gonorrhoeae SK-92-679] gi|269209729|gb|EEZ76184.1| NADH dehydrogenase, B subunit [Neisseria lactamica ATCC 23970] gi|284798053|gb|EFC53400.1| NADH dehydrogenase, B subunit [Neisseria subflava NJ9703] gi|296839669|gb|EFH23607.1| NADH dehydrogenase, B subunit [Neisseria polysaccharea ATCC 43768] gi|304336940|gb|EFM03130.1| NADH-quinone oxidoreductase subunit B [Neisseria meningitidis ATCC 13091] gi|308388462|gb|ADO30782.1| NADH dehydrogenase I chain B [Neisseria meningitidis alpha710] gi|309379802|emb|CBX21578.1| unnamed protein product [Neisseria lactamica Y92-1009] gi|313006747|emb|CBN88217.1| NADH dehydrogenase I chain B [Neisseria lactamica 020-06] gi|316985170|gb|EFV64122.1| NADH-quinone oxidoreductase, B subunit [Neisseria meningitidis H44/76] gi|317165131|gb|ADV08672.1| NADH dehydrogenase subunit B [Neisseria gonorrhoeae TCDC-NG08107] gi|317399719|gb|EFV80382.1| NADH dehydrogenase subunit I B [Neisseria mucosa C102] gi|319411275|emb|CBY91682.1| NADH-quinone oxidoreductase chain B (NADH dehydrogenase I, chain B; NDH-1, chain B) [Neisseria meningitidis WUE 2594] gi|325129040|gb|EGC51890.1| NADH:ubiquinone dehydrogenase, B subunit [Neisseria meningitidis N1568] gi|325130970|gb|EGC53697.1| NADH:ubiquinone dehydrogenase, B subunit [Neisseria meningitidis OX99.30304] gi|325131612|gb|EGC54319.1| NADH:ubiquinone dehydrogenase, B subunit [Neisseria meningitidis M6190] gi|325135045|gb|EGC57673.1| NADH:ubiquinone dehydrogenase, B subunit [Neisseria meningitidis M13399] gi|325137069|gb|EGC59665.1| NADH:ubiquinone dehydrogenase, B subunit [Neisseria meningitidis M0579] gi|325139133|gb|EGC61679.1| NADH:ubiquinone dehydrogenase, B subunit [Neisseria meningitidis ES14902] gi|325141078|gb|EGC63581.1| NADH:ubiquinone dehydrogenase, B subunit [Neisseria meningitidis CU385] gi|325143083|gb|EGC65430.1| NADH:ubiquinone dehydrogenase, B subunit [Neisseria meningitidis 961-5945] gi|325143153|gb|EGC65499.1| NADH:ubiquinone dehydrogenase, B subunit [Neisseria meningitidis 961-5945] gi|325145306|gb|EGC67584.1| NADH:ubiquinone dehydrogenase, B subunit [Neisseria meningitidis M01-240013] gi|325197528|gb|ADY92984.1| NADH:ubiquinone dehydrogenase, B subunit [Neisseria meningitidis G2136] gi|325199445|gb|ADY94900.1| NADH:ubiquinone dehydrogenase, B subunit [Neisseria meningitidis H44/76] gi|325202929|gb|ADY98383.1| NADH:ubiquinone dehydrogenase, B subunit [Neisseria meningitidis M01-240149] gi|325203359|gb|ADY98812.1| NADH:ubiquinone dehydrogenase, B subunit [Neisseria meningitidis M01-240355] gi|325205327|gb|ADZ00780.1| NADH:ubiquinone dehydrogenase, B subunit [Neisseria meningitidis M04-240196] gi|325207273|gb|ADZ02725.1| NADH:ubiquinone dehydrogenase, B subunit [Neisseria meningitidis NZ-05/33] Length = 160 Score = 239 bits (610), Expect = 1e-61, Method: Composition-based stats. Identities = 109/151 (72%), Positives = 128/151 (84%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 + KGF+ TS D ++ + RTGSL +TFGLACCAVEMM A M RYDL+RFG R SPRQ Sbjct: 6 VLKKGFITTSADTVLNYMRTGSLWPVTFGLACCAVEMMHAGMARYDLDRFGIIFRPSPRQ 65 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 +D+MIVAGTLTNKMA ALRRVYDQ+ EPR+V+SMGSCANGGGYYHYSYSVVRG DR+VPV Sbjct: 66 ADLMIVAGTLTNKMAPALRRVYDQLAEPRWVLSMGSCANGGGYYHYSYSVVRGADRVVPV 125 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 D+YVPGCPPTAEALIYG++ LQ+KI+R + Sbjct: 126 DVYVPGCPPTAEALIYGLIQLQQKIKRTSTI 156 >gi|303324039|ref|XP_003072007.1| NADH-ubiquinone oxidoreductase, putative [Coccidioides posadasii C735 delta SOWgp] gi|240111717|gb|EER29862.1| NADH-ubiquinone oxidoreductase, putative [Coccidioides posadasii C735 delta SOWgp] Length = 213 Score = 239 bits (610), Expect = 1e-61, Method: Composition-based stats. Identities = 107/181 (59%), Positives = 136/181 (75%), Gaps = 4/181 (2%) Query: 4 TTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLA 63 T + ++ S + +L+ V D + + +T+ D LV WAR GSL ++FGLA Sbjct: 32 TYIQRQPSSTWNGNALKPVKPD----AEKGAPLQHFLTTTDNLVNWARQGSLWPLSFGLA 87 Query: 64 CCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYV 123 CC +EMM ASMPRYD +R G RASPRQ+DVM+VAGT+TNKMA ALR +YDQMP+P++V Sbjct: 88 CCGLEMMSASMPRYDQDRLGIIFRASPRQADVMLVAGTVTNKMAPALRLLYDQMPDPKWV 147 Query: 124 ISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 ISMGSCANGGGYYHYSYSV+RG DRI+PVDIYVPGCPPT EAL+YG+ LLQK++R+ Sbjct: 148 ISMGSCANGGGYYHYSYSVLRGVDRIIPVDIYVPGCPPTPEALLYGVFLLQKRMRKTRIT 207 Query: 184 K 184 + Sbjct: 208 R 208 >gi|320036960|gb|EFW18898.1| NADH-ubiquinone oxidoreductase 20 kDa subunit [Coccidioides posadasii str. Silveira] Length = 213 Score = 239 bits (610), Expect = 1e-61, Method: Composition-based stats. Identities = 107/181 (59%), Positives = 136/181 (75%), Gaps = 4/181 (2%) Query: 4 TTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLA 63 T + ++ S + +L+ V D + + +T+ D LV WAR GSL ++FGLA Sbjct: 32 TYIQRQPSSTWNGNALKPVKPD----AEKGAPLQHFLTTTDNLVNWARQGSLWPLSFGLA 87 Query: 64 CCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYV 123 CC +EMM ASMPRYD +R G RASPRQ+DVM+VAGT+TNKMA ALR +YDQMP+P++V Sbjct: 88 CCGLEMMSASMPRYDQDRLGIIFRASPRQADVMLVAGTVTNKMAPALRLLYDQMPDPKWV 147 Query: 124 ISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 ISMGSCANGGGYYHYSYSV+RG DRI+PVDIYVPGCPPT EAL+YG+ LLQK++R+ Sbjct: 148 ISMGSCANGGGYYHYSYSVLRGVDRIIPVDIYVPGCPPTPEALLYGVFLLQKRMRKTRIT 207 Query: 184 K 184 + Sbjct: 208 R 208 >gi|188577695|ref|YP_001914624.1| NADH dehydrogenase subunit B [Xanthomonas oryzae pv. oryzae PXO99A] gi|238065244|sp|B2SVL8|NUOB_XANOP RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|188522147|gb|ACD60092.1| NADH-ubiquinone oxidoreductase 20 kda subunit [Xanthomonas oryzae pv. oryzae PXO99A] Length = 182 Score = 239 bits (610), Expect = 1e-61, Method: Composition-based stats. Identities = 118/181 (65%), Positives = 139/181 (76%), Gaps = 2/181 (1%) Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62 + T+++ + + +E D + + KG++ TSVD L+ WARTGS+ MTFGL Sbjct: 2 IQTLDRLMTNPMPEGRVE--DILRPEGENPLLEKGYVTTSVDALLNWARTGSMWPMTFGL 59 Query: 63 ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122 ACCAVEMM A R DL+R+G R SPRQSDVMIVAGTL NKMA ALR+VYDQMP+P++ Sbjct: 60 ACCAVEMMHAGASRLDLDRYGVVFRPSPRQSDVMIVAGTLVNKMAPALRKVYDQMPDPKW 119 Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQKKI R Sbjct: 120 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALVYGILQLQKKIWRTQT 179 Query: 183 V 183 + Sbjct: 180 I 180 >gi|312211788|emb|CBX91872.1| hypothetical protein [Leptosphaeria maculans] Length = 233 Score = 239 bits (610), Expect = 1e-61, Method: Composition-based stats. Identities = 111/172 (64%), Positives = 126/172 (73%) Query: 13 GQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQA 72 + + + + +T++DQ+ WAR SL MTFGLACCAVEMM Sbjct: 57 APPPMKQARREVPLPSQEGKKGAMQYALTTLDQVANWARQSSLWPMTFGLACCAVEMMHL 116 Query: 73 SMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANG 132 S PRYD +R G RASPRQSDVMIVAGTLTNKMA ALR+VYDQMP+PR+VISMGSCANG Sbjct: 117 STPRYDQDRLGIIFRASPRQSDVMIVAGTLTNKMAPALRQVYDQMPDPRWVISMGSCANG 176 Query: 133 GGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 GGYYHYSYSV RGCDRIVPVDIYVPGCPPTAEAL+YGI LQKK+R + Sbjct: 177 GGYYHYSYSVTRGCDRIVPVDIYVPGCPPTAEALMYGIFQLQKKMRHTKITR 228 >gi|170092259|ref|XP_001877351.1| predicted protein [Laccaria bicolor S238N-H82] gi|164647210|gb|EDR11454.1| predicted protein [Laccaria bicolor S238N-H82] Length = 191 Score = 239 bits (610), Expect = 2e-61, Method: Composition-based stats. Identities = 112/183 (61%), Positives = 135/183 (73%), Gaps = 6/183 (3%) Query: 6 VNQKIISGQSSCSLEKVDADFSR------ISSEITHKGFLVTSVDQLVTWARTGSLMWMT 59 Q+ ++ + E V R + ++++++D++ WAR GS+ MT Sbjct: 2 AEQQPVAPPPTSPTEPVTLLAQRGSLQLSLEQPQNGAEYVLSTLDKVTNWARQGSMWPMT 61 Query: 60 FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119 FGLACCAVEMM + RYD +R G RASPRQSD+MIVAGTLTNKMA ALR+VYDQMPE Sbjct: 62 FGLACCAVEMMHMAAARYDQDRLGVVFRASPRQSDIMIVAGTLTNKMAPALRKVYDQMPE 121 Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179 PR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG+L LQ+K+RR Sbjct: 122 PRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGMLQLQRKMRR 181 Query: 180 VGN 182 Sbjct: 182 SRK 184 >gi|88658003|ref|YP_507585.1| NADH dehydrogenase subunit B [Ehrlichia chaffeensis str. Arkansas] gi|123493072|sp|Q2GG48|NUOB_EHRCR RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|88599460|gb|ABD44929.1| NADH dehydrogenase I, B subunit [Ehrlichia chaffeensis str. Arkansas] Length = 179 Score = 239 bits (610), Expect = 2e-61, Method: Composition-based stats. Identities = 116/169 (68%), Positives = 131/169 (77%), Gaps = 5/169 (2%) Query: 19 LEKVDADFS-RISSEITHKGFLVTSVDQLVT----WARTGSLMWMTFGLACCAVEMMQAS 73 + K D+ + + H+GF+VT L+ WAR+ SL MTFGLACCAVEMM + Sbjct: 2 INKNDSVLNNQFWQSYNHQGFMVTQFSDLINYISNWARSNSLWPMTFGLACCAVEMMHTA 61 Query: 74 MPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGG 133 RYDL+R+G RASPRQ+DVMIVAGTLTNKMA ALR+VYDQM EPRYVISMGSCANGG Sbjct: 62 ASRYDLDRYGVMFRASPRQADVMIVAGTLTNKMAPALRKVYDQMTEPRYVISMGSCANGG 121 Query: 134 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGI LQ+KI R Sbjct: 122 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGIFCLQQKINRGNT 170 >gi|329118899|ref|ZP_08247594.1| NADH-quinone oxidoreductase subunit B [Neisseria bacilliformis ATCC BAA-1200] gi|327464927|gb|EGF11217.1| NADH-quinone oxidoreductase subunit B [Neisseria bacilliformis ATCC BAA-1200] Length = 159 Score = 239 bits (609), Expect = 2e-61, Method: Composition-based stats. Identities = 111/151 (73%), Positives = 129/151 (85%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 + +KGF+ TS D ++ + RTGSL +TFGLACCAVEMM A M RYDL+RFG R SPRQ Sbjct: 6 VLNKGFITTSADTVLNYMRTGSLWPVTFGLACCAVEMMHAGMARYDLDRFGIIFRPSPRQ 65 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 SD+MIVAGTLTNKMA ALRRVYDQM EPR+V+SMGSCANGGGYYHYSYSVVRGCDR+VPV Sbjct: 66 SDLMIVAGTLTNKMAPALRRVYDQMAEPRWVLSMGSCANGGGYYHYSYSVVRGCDRVVPV 125 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 D+YVPGCPPTAEAL+YG++ LQ KI+R + Sbjct: 126 DVYVPGCPPTAEALLYGLIQLQGKIKRTYTI 156 >gi|289614329|emb|CBI58839.1| unnamed protein product [Sordaria macrospora] Length = 230 Score = 239 bits (609), Expect = 2e-61, Method: Composition-based stats. Identities = 110/165 (66%), Positives = 128/165 (77%) Query: 20 EKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDL 79 E+ + + + +T++D +V WAR SL MTFGLACCAVEMM S PRYD Sbjct: 61 ERREVPLASQEGTKGAVQYALTTLDSIVNWARQSSLWPMTFGLACCAVEMMHLSTPRYDQ 120 Query: 80 ERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS 139 +R G RASPRQSDVMIVAGTLTNKMA ALR+VYDQMP+PR+VISMGSCANGGGYYHYS Sbjct: 121 DRLGIIFRASPRQSDVMIVAGTLTNKMAPALRQVYDQMPDPRWVISMGSCANGGGYYHYS 180 Query: 140 YSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 YSVVRGCDRIVPVD+YVPGCPPT+EAL+YGI LQ+K+R + Sbjct: 181 YSVVRGCDRIVPVDVYVPGCPPTSEALMYGIFQLQRKMRNTKITR 225 >gi|121998543|ref|YP_001003330.1| NADH-quinone oxidoreductase subunit B [Halorhodospira halophila SL1] gi|238065156|sp|A1WXW6|NUOB_HALHL RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|121589948|gb|ABM62528.1| NADH dehydrogenase subunit B [Halorhodospira halophila SL1] Length = 158 Score = 239 bits (609), Expect = 2e-61, Method: Composition-based stats. Identities = 114/151 (75%), Positives = 126/151 (83%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 I +G++ TS D+L+ WARTGSL MTFGLACCAVEMM + RYD++R G R SPRQ Sbjct: 6 ILERGYVTTSADKLINWARTGSLWPMTFGLACCAVEMMHTAAGRYDMDRNGLIFRPSPRQ 65 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 SDVMIVAGTL NKMA ALR+VYDQMPEP++VISMGSCANGGGYYHYSYSV RGCDRIVPV Sbjct: 66 SDVMIVAGTLCNKMAPALRKVYDQMPEPKWVISMGSCANGGGYYHYSYSVTRGCDRIVPV 125 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 DIYVPGCPPTAEAL YGIL LQ KIRR + Sbjct: 126 DIYVPGCPPTAEALYYGILQLQNKIRRTNTI 156 >gi|190571252|ref|YP_001975610.1| NADH dehydrogenase I, B subunit [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|213018650|ref|ZP_03334458.1| NADH dehydrogenase I, B subunit [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|218528013|sp|B3CM42|NUOB_WOLPP RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|190357524|emb|CAQ54961.1| NADH dehydrogenase I, B subunit [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|212995601|gb|EEB56241.1| NADH dehydrogenase I, B subunit [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 167 Score = 238 bits (608), Expect = 2e-61, Method: Composition-based stats. Identities = 111/153 (72%), Positives = 131/153 (85%), Gaps = 4/153 (2%) Query: 35 HKGFLVTS----VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP 90 +GFL+T +D ++ WAR+GSL MTFGLACCAVEMM + RYDL+R+G RASP Sbjct: 15 KEGFLITKFGDLIDYIMNWARSGSLWPMTFGLACCAVEMMHTASSRYDLDRYGIIFRASP 74 Query: 91 RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150 RQ+DVMIVAGTLTNKMA+ALR+VYDQM +P+YV+SMGSCANGGGYYHYSYSVVRGCDRIV Sbjct: 75 RQADVMIVAGTLTNKMAAALRKVYDQMADPKYVVSMGSCANGGGYYHYSYSVVRGCDRIV 134 Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 PVD+YVPGCPPTAEAL+YG+L LQ KI+R N+ Sbjct: 135 PVDVYVPGCPPTAEALLYGMLCLQNKIKRTKNI 167 >gi|59802071|ref|YP_208783.1| NADH dehydrogenase subunit B [Neisseria gonorrhoeae FA 1090] gi|240017450|ref|ZP_04723990.1| NADH dehydrogenase subunit B [Neisseria gonorrhoeae FA6140] gi|240129042|ref|ZP_04741703.1| NADH dehydrogenase subunit B [Neisseria gonorrhoeae SK-93-1035] gi|268687420|ref|ZP_06154282.1| NADH dehydrogenase subunit I B [Neisseria gonorrhoeae SK-93-1035] gi|293398111|ref|ZP_06642316.1| NADH-quinone oxidoreductase subunit B [Neisseria gonorrhoeae F62] gi|75355476|sp|Q5F616|NUOB_NEIG1 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|59718966|gb|AAW90371.1| putative NADH dehydrogenase I chain B [Neisseria gonorrhoeae FA 1090] gi|268627704|gb|EEZ60104.1| NADH dehydrogenase subunit I B [Neisseria gonorrhoeae SK-93-1035] gi|291611374|gb|EFF40444.1| NADH-quinone oxidoreductase subunit B [Neisseria gonorrhoeae F62] Length = 160 Score = 238 bits (608), Expect = 2e-61, Method: Composition-based stats. Identities = 109/151 (72%), Positives = 127/151 (84%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 + KGF+ TS D ++ RTGSL +TFGLACCAVEMM A M RYDL+RFG R SPRQ Sbjct: 6 VLKKGFITTSADTVLNHMRTGSLWPVTFGLACCAVEMMHAGMARYDLDRFGIIFRPSPRQ 65 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 +D+MIVAGTLTNKMA ALRRVYDQ+ EPR+V+SMGSCANGGGYYHYSYSVVRG DR+VPV Sbjct: 66 ADLMIVAGTLTNKMAPALRRVYDQLAEPRWVLSMGSCANGGGYYHYSYSVVRGADRVVPV 125 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 D+YVPGCPPTAEALIYG++ LQ+KI+R + Sbjct: 126 DVYVPGCPPTAEALIYGLIQLQQKIKRTSTI 156 >gi|319779199|ref|YP_004130112.1| NADH-ubiquinone oxidoreductase chain B [Taylorella equigenitalis MCE9] gi|317109223|gb|ADU91969.1| NADH-ubiquinone oxidoreductase chain B [Taylorella equigenitalis MCE9] Length = 159 Score = 238 bits (608), Expect = 3e-61, Method: Composition-based stats. Identities = 114/155 (73%), Positives = 130/155 (83%) Query: 29 ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88 +S +KGFLVTS D ++ W RTGS+ +TFGLACCAVEMM A RYDL++FG R Sbjct: 1 MSDTSNNKGFLVTSTDSVLHWLRTGSMWPVTFGLACCAVEMMHAGAARYDLDQFGIIFRP 60 Query: 89 SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 148 SPRQSD+MIVAGTLTNKMA ALR+VYDQM EPR+V+SMGSCANGGGYYHYSY+VVRGCDR Sbjct: 61 SPRQSDIMIVAGTLTNKMAPALRKVYDQMAEPRWVVSMGSCANGGGYYHYSYAVVRGCDR 120 Query: 149 IVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 IVPVDIYVPGCPPTAEALIYG+L LQ K+RR + Sbjct: 121 IVPVDIYVPGCPPTAEALIYGMLQLQNKMRRTLTI 155 >gi|322694377|gb|EFY86208.1| mitochondrial NADH-ubiquinone oxidoreductase 20 kD subunit [Metarhizium acridum CQMa 102] Length = 367 Score = 238 bits (608), Expect = 3e-61, Method: Composition-based stats. Identities = 113/159 (71%), Positives = 128/159 (80%), Gaps = 3/159 (1%) Query: 29 ISSEITHKGFL---VTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA 85 + SE KG + +T++D + WAR SL MTFGLACCAVEMM S PRYD +R G Sbjct: 204 LPSEEGTKGVVQYALTTLDVIANWARQSSLWPMTFGLACCAVEMMHLSTPRYDQDRLGII 263 Query: 86 PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRG 145 RASPRQSDVMIVAGTLTNKMA ALR+VYDQMP+PR+VISMGSCANGGGYYHYSYSVVRG Sbjct: 264 FRASPRQSDVMIVAGTLTNKMAPALRQVYDQMPDPRWVISMGSCANGGGYYHYSYSVVRG 323 Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 CDRIVPVDIYVPGCPPT+EAL+YGI LQ+K+R + Sbjct: 324 CDRIVPVDIYVPGCPPTSEALMYGIFQLQRKMRNTKITR 362 >gi|238023160|ref|ZP_04603586.1| hypothetical protein GCWU000324_03086 [Kingella oralis ATCC 51147] gi|237865543|gb|EEP66683.1| hypothetical protein GCWU000324_03086 [Kingella oralis ATCC 51147] Length = 159 Score = 238 bits (608), Expect = 3e-61, Method: Composition-based stats. Identities = 108/151 (71%), Positives = 127/151 (84%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 + +KGF+ S D ++ + RTGSL +TFGLACCAVEMM A M RYDL+RFG R SPRQ Sbjct: 6 VLNKGFVTASADTVLNYVRTGSLWPVTFGLACCAVEMMHAGMARYDLDRFGIIFRPSPRQ 65 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 +D+MIVAGTLTNKMA ALRRVYDQM EPR+V+SMGSCANGGGYYHYSYSVVRG DR+VPV Sbjct: 66 ADLMIVAGTLTNKMAPALRRVYDQMAEPRWVLSMGSCANGGGYYHYSYSVVRGADRVVPV 125 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 D+YVPGCPPTAEAL+YG++ LQ KI+R + Sbjct: 126 DVYVPGCPPTAEALLYGLIQLQGKIKRTYTI 156 >gi|58584500|ref|YP_198073.1| NADH dehydrogenase subunit B [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|75497991|sp|Q5GT43|NUOB_WOLTR RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|58418816|gb|AAW70831.1| NADH:ubiquinone oxidoreductase chain B [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 168 Score = 238 bits (608), Expect = 3e-61, Method: Composition-based stats. Identities = 113/153 (73%), Positives = 131/153 (85%), Gaps = 4/153 (2%) Query: 35 HKGFLVTS----VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP 90 +GFLVT +D ++ WAR+GSL MTFGLACCAVEMM + RYDL+R+G RASP Sbjct: 16 KEGFLVTKFGSLIDYVINWARSGSLWPMTFGLACCAVEMMHTASSRYDLDRYGIMFRASP 75 Query: 91 RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150 RQ+DVMIVAGTLTNKMA+ALR+VYDQM +P+YV+SMGSCANGGGYYHYSYSVVRGCDRIV Sbjct: 76 RQADVMIVAGTLTNKMAAALRKVYDQMADPKYVVSMGSCANGGGYYHYSYSVVRGCDRIV 135 Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 PVDIYVPGCPPTAEAL+YG+L LQ KI+R N+ Sbjct: 136 PVDIYVPGCPPTAEALLYGMLCLQNKIKRTQNI 168 >gi|163855988|ref|YP_001630286.1| NADH dehydrogenase subunit B [Bordetella petrii DSM 12804] gi|163259716|emb|CAP42017.1| NADH-ubiquinone oxidoreductase, 20 kDa subunit, chain B [Bordetella petrii] Length = 178 Score = 238 bits (607), Expect = 3e-61, Method: Composition-based stats. Identities = 110/151 (72%), Positives = 127/151 (84%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 I +GF+ TS D+ + WA+TGS+ MTFGLACCAVEMM A RYDL++FG R SPRQ Sbjct: 26 ILKQGFITTSADKFLNWAKTGSMWPMTFGLACCAVEMMHAGAARYDLDQFGIIFRPSPRQ 85 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 SD+MIVAGTL NKMA ALR+VYDQMPEPR+V+SMGSCANGGGYYHYSYSVVRGCDRIVPV Sbjct: 86 SDLMIVAGTLCNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIVPV 145 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 D+YVPGCPPTAEAL+YG+L +Q KIR + Sbjct: 146 DVYVPGCPPTAEALVYGLLQMQNKIRLTNTI 176 >gi|325915540|ref|ZP_08177851.1| NADH dehydrogenase subunit B [Xanthomonas vesicatoria ATCC 35937] gi|325538256|gb|EGD09941.1| NADH dehydrogenase subunit B [Xanthomonas vesicatoria ATCC 35937] Length = 182 Score = 238 bits (607), Expect = 3e-61, Method: Composition-based stats. Identities = 118/181 (65%), Positives = 139/181 (76%), Gaps = 2/181 (1%) Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62 + T+++ + + +E D + + KG++ TSVD L+ WARTGS+ MTFGL Sbjct: 2 IQTLDRLMTNPMPEGRVE--DILRPDGENPLLEKGYVTTSVDALLNWARTGSMWPMTFGL 59 Query: 63 ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122 ACCAVEMM A R DL+R+G R SPRQSDVMIVAGTL NKMA ALR+VYDQMP+P++ Sbjct: 60 ACCAVEMMHAGASRLDLDRYGVVFRPSPRQSDVMIVAGTLVNKMAPALRKVYDQMPDPKW 119 Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQKKI R Sbjct: 120 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALVYGILQLQKKIWRTQT 179 Query: 183 V 183 + Sbjct: 180 I 180 >gi|225024124|ref|ZP_03713316.1| hypothetical protein EIKCOROL_00992 [Eikenella corrodens ATCC 23834] gi|294669093|ref|ZP_06734179.1| NADH dehydrogenase, B subunit [Neisseria elongata subsp. glycolytica ATCC 29315] gi|224943149|gb|EEG24358.1| hypothetical protein EIKCOROL_00992 [Eikenella corrodens ATCC 23834] gi|291309085|gb|EFE50328.1| NADH dehydrogenase, B subunit [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 159 Score = 238 bits (607), Expect = 3e-61, Method: Composition-based stats. Identities = 112/151 (74%), Positives = 128/151 (84%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 I +KGF+ S D ++ + RTGSL +TFGLACCAVEMM A M RYDL+RFG R SPRQ Sbjct: 6 ILNKGFITASADTVLNYVRTGSLWPVTFGLACCAVEMMHAGMARYDLDRFGIIFRPSPRQ 65 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 SD+MIVAGTLTNKMA ALRRVYDQM EPR+V+SMGSCANGGGYYHYSYSVVRGCDR+VPV Sbjct: 66 SDLMIVAGTLTNKMAPALRRVYDQMAEPRWVLSMGSCANGGGYYHYSYSVVRGCDRVVPV 125 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 D+YVPGCPPTAEALIYG++ LQ KI+R + Sbjct: 126 DVYVPGCPPTAEALIYGLIQLQGKIKRTYTI 156 >gi|296811983|ref|XP_002846329.1| NADH:ubiquinone oxidoreductase kD subunit [Arthroderma otae CBS 113480] gi|238841585|gb|EEQ31247.1| NADH:ubiquinone oxidoreductase kD subunit [Arthroderma otae CBS 113480] Length = 197 Score = 238 bits (607), Expect = 3e-61, Method: Composition-based stats. Identities = 101/168 (60%), Positives = 126/168 (75%) Query: 17 CSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPR 76 ++++ E ++T DQ+ WAR GSL +TFGLACC VEMM SMPR Sbjct: 25 PRPKRLEVPLPSQGEEPVPLRHVLTKFDQIANWARQGSLWPLTFGLACCGVEMMAVSMPR 84 Query: 77 YDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY 136 YDL+R G RASPRQ+DV+IV+GT+TNKM A+R +YDQMP+P++VISMGSCANGGGYY Sbjct: 85 YDLDRMGIFYRASPRQADVLIVSGTVTNKMGPAIRLLYDQMPDPKWVISMGSCANGGGYY 144 Query: 137 HYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 HYSYSVVRG DR++PVD+YVPGCPPTAEA +YG+L LQKKI+ + Sbjct: 145 HYSYSVVRGVDRLLPVDVYVPGCPPTAEAFLYGVLQLQKKIKNQRTTR 192 >gi|332968234|gb|EGK07311.1| NADH-quinone oxidoreductase subunit B [Kingella kingae ATCC 23330] Length = 159 Score = 238 bits (607), Expect = 3e-61, Method: Composition-based stats. Identities = 109/151 (72%), Positives = 127/151 (84%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 + +KGF+ S D ++ + RTGSL +TFGLACCAVEMM A M RYDL+RFG R SPRQ Sbjct: 6 VLNKGFVTASADTVLNYVRTGSLWPVTFGLACCAVEMMHAGMARYDLDRFGIIFRPSPRQ 65 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 SD+MIVAGTLTNKMA ALRRVYDQM EPR+V+SMGSCANGGGYYHYSYSVVRG DR+VPV Sbjct: 66 SDLMIVAGTLTNKMAPALRRVYDQMAEPRWVLSMGSCANGGGYYHYSYSVVRGADRVVPV 125 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 D+YVPGCPPTAEAL+YG++ LQ KI+R + Sbjct: 126 DVYVPGCPPTAEALLYGLIQLQGKIKRTYTI 156 >gi|317033085|ref|XP_001394844.2| NADH dehydrogenase [ubiquinone] iron-sulfur protein 7 [Aspergillus niger CBS 513.88] Length = 155 Score = 238 bits (607), Expect = 3e-61, Method: Composition-based stats. Identities = 106/146 (72%), Positives = 124/146 (84%) Query: 39 LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIV 98 ++T+ DQ+V WAR GSL ++FGLACCA+EMM SMPRYD +R G RASPRQSDVMIV Sbjct: 5 VLTTFDQIVNWARQGSLWPLSFGLACCAIEMMHVSMPRYDQDRLGIIFRASPRQSDVMIV 64 Query: 99 AGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPG 158 AGT+TNKMA ALR+ YDQMPEPR+VISMGSCANGGGYYHYSYS+VRG DRIVPVD+Y+PG Sbjct: 65 AGTVTNKMAPALRQCYDQMPEPRWVISMGSCANGGGYYHYSYSIVRGVDRIVPVDVYIPG 124 Query: 159 CPPTAEALIYGILLLQKKIRRVGNVK 184 CPPTAEA +YG+ LQKKI+R + Sbjct: 125 CPPTAEATLYGVFQLQKKIKRTRITR 150 >gi|218767068|ref|YP_002341580.1| NADH dehydrogenase subunit B [Neisseria meningitidis Z2491] gi|218527997|sp|A1INN9|NUOB_NEIMA RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|121051076|emb|CAM07346.1| NADH dehydrogenase I chain B [Neisseria meningitidis Z2491] Length = 160 Score = 238 bits (607), Expect = 3e-61, Method: Composition-based stats. Identities = 110/151 (72%), Positives = 129/151 (85%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 + KGF+ TS D ++ + RTGSL +TFGLACCAVEMM A M RYDL+RFG R SPRQ Sbjct: 6 VLKKGFITTSADTVLNYMRTGSLWPVTFGLACCAVEMMHAGMARYDLDRFGIIFRPSPRQ 65 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 +D+MIVAGTLTNKMASALRRVYDQ+ EPR+V+SMGSCANGGGYYHYSYSVVRG DR+VPV Sbjct: 66 ADLMIVAGTLTNKMASALRRVYDQLAEPRWVLSMGSCANGGGYYHYSYSVVRGADRVVPV 125 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 D+YVPGCPPTAEALIYG++ LQ+KI+R + Sbjct: 126 DVYVPGCPPTAEALIYGLIQLQQKIKRTSTI 156 >gi|325267311|ref|ZP_08133973.1| NADH-quinone oxidoreductase subunit B [Kingella denitrificans ATCC 33394] gi|324981248|gb|EGC16898.1| NADH-quinone oxidoreductase subunit B [Kingella denitrificans ATCC 33394] Length = 159 Score = 238 bits (607), Expect = 4e-61, Method: Composition-based stats. Identities = 108/151 (71%), Positives = 127/151 (84%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 + +KGF+ S D ++ + RTGSL +TFGLACCAVEMM A M RYDL+RFG R SPRQ Sbjct: 6 VLNKGFVTASADTVLNYVRTGSLWPVTFGLACCAVEMMHAGMARYDLDRFGIIFRPSPRQ 65 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 +D+MIVAGTLTNKMA ALRRVYDQM EPR+V+SMGSCANGGGYYHYSYSVVRG DR+VPV Sbjct: 66 ADLMIVAGTLTNKMAPALRRVYDQMAEPRWVLSMGSCANGGGYYHYSYSVVRGADRVVPV 125 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 D+YVPGCPPTAEAL+YG++ LQ KI+R + Sbjct: 126 DVYVPGCPPTAEALLYGLIQLQGKIKRTCTI 156 >gi|126275592|ref|XP_001386878.1| NADH-ubiquinone oxidoreductase [Scheffersomyces stipitis CBS 6054] gi|126212747|gb|EAZ62855.1| NADH-ubiquinone oxidoreductase [Pichia stipitis CBS 6054] Length = 207 Score = 237 bits (606), Expect = 4e-61, Method: Composition-based stats. Identities = 109/169 (64%), Positives = 130/169 (76%), Gaps = 2/169 (1%) Query: 18 SLEKVDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMP 75 + + + DF +S + + +TS+D + WAR S +TFGLACCAVEMM S P Sbjct: 34 TPKALPTDFPLMSEKTASSPIDYALTSLDSIANWARKSSFWPVTFGLACCAVEMMHVSTP 93 Query: 76 RYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY 135 RYD +R G RASPRQSD+MIVAGT+TNKMA ALR+VYDQMP+PR+VISMGSCANGGGY Sbjct: 94 RYDQDRLGIIFRASPRQSDIMIVAGTVTNKMAPALRQVYDQMPDPRWVISMGSCANGGGY 153 Query: 136 YHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 YHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG+ LQKK+ + + Sbjct: 154 YHYSYSVVRGCDRIVPVDIYVPGCPPTAEALMYGVFQLQKKMMKTRITR 202 >gi|317158068|ref|XP_001826792.2| NADH dehydrogenase [ubiquinone] iron-sulfur protein 7 [Aspergillus oryzae RIB40] Length = 190 Score = 237 bits (606), Expect = 4e-61, Method: Composition-based stats. Identities = 103/151 (68%), Positives = 121/151 (80%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93 ++T++DQLV WAR SL ++FGLACCAVEMMQ SMPRYD +R G RASPRQS Sbjct: 35 NKAEHVLTTIDQLVNWARQSSLWPLSFGLACCAVEMMQVSMPRYDQDRLGIIFRASPRQS 94 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD 153 DVM+VAGT+TNKM ALR+ YDQMP+P++VISMGSCANGGGYYHYSYSVVRG DRIVPVD Sbjct: 95 DVMVVAGTVTNKMGPALRQCYDQMPDPKWVISMGSCANGGGYYHYSYSVVRGVDRIVPVD 154 Query: 154 IYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 +Y+PGCPPT EA + GI LQKK+R + Sbjct: 155 VYIPGCPPTPEAFLCGIFQLQKKMRHTKVTR 185 >gi|56421890|ref|YP_149208.1| NADH dehydrogenase subunit B [Geobacillus kaustophilus HTA426] gi|261420760|ref|YP_003254442.1| NADH dehydrogenase subunit B [Geobacillus sp. Y412MC61] gi|297531555|ref|YP_003672830.1| NADH-quinone oxidoreductase subunit beta [Geobacillus sp. C56-T3] gi|319768430|ref|YP_004133931.1| NADH-quinone oxidoreductase, B subunit [Geobacillus sp. Y412MC52] gi|81346274|sp|Q5KUJ6|NUOB_GEOKA RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|56381732|dbj|BAD77640.1| NADH:ubiquinone oxidoreductase chain B (Fe-S oxidoreductases) [Geobacillus kaustophilus HTA426] gi|261377217|gb|ACX79960.1| NADH-quinone oxidoreductase, B subunit [Geobacillus sp. Y412MC61] gi|297254807|gb|ADI28253.1| NADH-quinone oxidoreductase, B subunit [Geobacillus sp. C56-T3] gi|317113296|gb|ADU95788.1| NADH-quinone oxidoreductase, B subunit [Geobacillus sp. Y412MC52] Length = 170 Score = 237 bits (606), Expect = 4e-61, Method: Composition-based stats. Identities = 93/153 (60%), Positives = 116/153 (75%) Query: 26 FSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA 85 FS + E + +T+++QL WAR+ SL +TFGLACCA+EMM YDL+RFG Sbjct: 8 FSGVEMEEVKRNVFLTTLEQLKGWARSSSLWPLTFGLACCAIEMMAVGGAHYDLDRFGSF 67 Query: 86 PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRG 145 RASPRQ+DVMIV+GT+T KMA LRR+YDQMPEP++VI+MGSCA GG Y SYSVV+G Sbjct: 68 FRASPRQADVMIVSGTVTKKMAPLLRRLYDQMPEPKWVIAMGSCATAGGPYVKSYSVVKG 127 Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 D+IVPVD+Y+PGCPP ALIYGI L++KIR Sbjct: 128 VDQIVPVDVYIPGCPPNPAALIYGIHKLKEKIR 160 >gi|85085876|ref|XP_957592.1| NADH:ubiquinone oxidoreductase 19.3kD subunit [Neurospora crassa OR74A] gi|6647651|sp|O47950|NDUS7_NEUCR RecName: Full=NADH-ubiquinone oxidoreductase 19.3 kDa subunit, mitochondrial; AltName: Full=Complex I-19.3kD; Short=CI-19.3kD; Flags: Precursor gi|2764632|emb|CAA04802.1| 19.3kD iron-sulfur subunit of mitochondrial complex I [Neurospora crassa] gi|28918685|gb|EAA28356.1| NADH:ubiquinone oxidoreductase 19.3kD subunit [Neurospora crassa OR74A] gi|40882330|emb|CAF06152.1| NADH-ubiquinone oxidoreductase 19.3 kDa subunit, mitochondrial precursor [Neurospora crassa] Length = 226 Score = 237 bits (606), Expect = 4e-61, Method: Composition-based stats. Identities = 111/165 (67%), Positives = 127/165 (76%) Query: 20 EKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDL 79 E+ + + +T++D +V WAR SL MTFGLACCAVEMM S PRYD Sbjct: 57 ERREVPLPSQEGTKGAVQYALTTLDSIVNWARQSSLWPMTFGLACCAVEMMHLSTPRYDQ 116 Query: 80 ERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS 139 +R G RASPRQSDVMIVAGTLTNKMA ALR+VYDQMP+PR+VISMGSCANGGGYYHYS Sbjct: 117 DRLGIIFRASPRQSDVMIVAGTLTNKMAPALRQVYDQMPDPRWVISMGSCANGGGYYHYS 176 Query: 140 YSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 YSVVRGCDRIVPVDIYVPGCPPT+EAL+YGI LQ+K+R + Sbjct: 177 YSVVRGCDRIVPVDIYVPGCPPTSEALMYGIFQLQRKMRNTKITR 221 >gi|68171628|ref|ZP_00544995.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit [Ehrlichia chaffeensis str. Sapulpa] gi|67998949|gb|EAM85633.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit [Ehrlichia chaffeensis str. Sapulpa] Length = 182 Score = 237 bits (606), Expect = 4e-61, Method: Composition-based stats. Identities = 115/169 (68%), Positives = 131/169 (77%), Gaps = 5/169 (2%) Query: 19 LEKVDADFS-RISSEITHKGFLVTSVDQLVT----WARTGSLMWMTFGLACCAVEMMQAS 73 + K D+ + + H+GF+VT L+ WAR+ SL MTFGLACCAVEMM + Sbjct: 2 INKNDSVLNNQFWQSYNHQGFMVTQFSDLINYISNWARSNSLWPMTFGLACCAVEMMHTA 61 Query: 74 MPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGG 133 RYDL+R+G RASPRQ+DVMIVAGTLTNKMA ALR+VYDQM EPRYVISMGSCANGG Sbjct: 62 ASRYDLDRYGVMFRASPRQADVMIVAGTLTNKMAPALRKVYDQMTEPRYVISMGSCANGG 121 Query: 134 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182 GYYHYSYSVVRGCDRIVPVDI+VPGCPPTAEAL+YGI LQ+KI R Sbjct: 122 GYYHYSYSVVRGCDRIVPVDIFVPGCPPTAEALLYGIFCLQQKINRGNT 170 >gi|156384021|ref|XP_001633130.1| predicted protein [Nematostella vectensis] gi|156220196|gb|EDO41067.1| predicted protein [Nematostella vectensis] Length = 209 Score = 237 bits (606), Expect = 4e-61, Method: Composition-based stats. Identities = 100/142 (70%), Positives = 123/142 (86%) Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVM 96 G++VT +D LV W+R SL + FGLACC +EMM + PRYD++RFG RASPRQ DVM Sbjct: 56 GYVVTKLDDLVNWSRRSSLWPLMFGLACCGIEMMHFAAPRYDMDRFGVVFRASPRQIDVM 115 Query: 97 IVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV 156 +V+GT+TNKMA ALRR+YDQMPEPR+VIS+GSCAN GGYY++SYSVVRGCDRI+PVDIYV Sbjct: 116 LVSGTVTNKMAPALRRLYDQMPEPRWVISVGSCANSGGYYYHSYSVVRGCDRIIPVDIYV 175 Query: 157 PGCPPTAEALIYGILLLQKKIR 178 PGCPP+AEAL++G+L LQKK+R Sbjct: 176 PGCPPSAEALLFGVLQLQKKVR 197 >gi|315051282|ref|XP_003175015.1| NADH-ubiquinone oxidoreductase subunit [Arthroderma gypseum CBS 118893] gi|311340330|gb|EFQ99532.1| NADH-ubiquinone oxidoreductase subunit [Arthroderma gypseum CBS 118893] Length = 191 Score = 237 bits (606), Expect = 4e-61, Method: Composition-based stats. Identities = 111/186 (59%), Positives = 132/186 (70%), Gaps = 2/186 (1%) Query: 1 MGLTTVNQK--IISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWM 58 M TT Q S ++++ E T +VT +DQ+ WAR GSL + Sbjct: 1 MPATTAGQTNATCSKALVPRPKRLEVPLPSQGEEPTPLRHMVTKLDQITNWARQGSLWPL 60 Query: 59 TFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMP 118 FGLACC VEMM SMPRYDL+R G RASPRQ+DV+IV+GT+TNKM ALR +YDQMP Sbjct: 61 MFGLACCGVEMMALSMPRYDLDRMGIIYRASPRQADVLIVSGTVTNKMGPALRLLYDQMP 120 Query: 119 EPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 +P++VISMGSCANGGGYYHYSYSVVRG DR+VPVD+YVPGCPPTAEA +YGIL LQKKI Sbjct: 121 DPKWVISMGSCANGGGYYHYSYSVVRGVDRLVPVDVYVPGCPPTAEAFMYGILQLQKKIS 180 Query: 179 RVGNVK 184 R + Sbjct: 181 RQRTTR 186 >gi|242088593|ref|XP_002440129.1| hypothetical protein SORBIDRAFT_09g026580 [Sorghum bicolor] gi|241945414|gb|EES18559.1| hypothetical protein SORBIDRAFT_09g026580 [Sorghum bicolor] Length = 202 Score = 237 bits (606), Expect = 4e-61, Method: Composition-based stats. Identities = 115/144 (79%), Positives = 123/144 (85%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 F+V+ VD L+ WAR GS+ MTFGLACCAVEMM A RYD +RFG R SPRQSD MI Sbjct: 51 FVVSKVDDLMNWARRGSIWPMTFGLACCAVEMMHAGASRYDFDRFGLIFRPSPRQSDCMI 110 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGTLTNKMA ALRRVYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP Sbjct: 111 VAGTLTNKMAPALRRVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 170 Query: 158 GCPPTAEALIYGILLLQKKIRRVG 181 GCPPTAEAL+YG+L LQKKI R Sbjct: 171 GCPPTAEALLYGVLQLQKKINRRK 194 >gi|302912562|ref|XP_003050728.1| hypothetical protein NECHADRAFT_60986 [Nectria haematococca mpVI 77-13-4] gi|256731666|gb|EEU45015.1| hypothetical protein NECHADRAFT_60986 [Nectria haematococca mpVI 77-13-4] Length = 223 Score = 237 bits (606), Expect = 4e-61, Method: Composition-based stats. Identities = 110/160 (68%), Positives = 127/160 (79%), Gaps = 3/160 (1%) Query: 28 RISSEITHKGFL---VTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF 84 + SE K + +T++D + WAR SL MTFGLACCAVEMM S PRYD +R G Sbjct: 59 PLPSEEGTKSVIQYALTTLDVIANWARQSSLWPMTFGLACCAVEMMHLSTPRYDQDRLGI 118 Query: 85 APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR 144 RASPRQSDVMIVAGTLTNKMA ALR+VYDQMP+PR+V+SMGSCANGGGYYHYSYSVVR Sbjct: 119 IFRASPRQSDVMIVAGTLTNKMAPALRQVYDQMPDPRWVVSMGSCANGGGYYHYSYSVVR 178 Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 GCDRIVPVD+YVPGCPPT+EAL+YGI LQ+K+R + Sbjct: 179 GCDRIVPVDVYVPGCPPTSEALMYGIFQLQRKMRNTKITR 218 >gi|167463142|ref|ZP_02328231.1| NADH-quinone oxidoreductase, B subunit [Paenibacillus larvae subsp. larvae BRL-230010] gi|322383097|ref|ZP_08056924.1| hypothetical protein PL1_1946 [Paenibacillus larvae subsp. larvae B-3650] gi|321152759|gb|EFX45385.1| hypothetical protein PL1_1946 [Paenibacillus larvae subsp. larvae B-3650] Length = 172 Score = 237 bits (606), Expect = 4e-61, Method: Composition-based stats. Identities = 90/158 (56%), Positives = 116/158 (73%), Gaps = 1/158 (0%) Query: 21 KVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLE 80 ++DA + E+ + T++DQ+ WAR+ SL +TFGLACCA+EMM YDL+ Sbjct: 4 RLDAVLPEVQEEL-QRNVFTTTLDQVKAWARSSSLWPLTFGLACCAIEMMGTGAAHYDLD 62 Query: 81 RFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSY 140 RFG R SPRQ+DVMIVA T+T KMA LRR+Y+QMPEP++VI+MGSCA GG Y SY Sbjct: 63 RFGVIFRTSPRQADVMIVAETVTKKMAPLLRRLYEQMPEPKWVIAMGSCATAGGPYVKSY 122 Query: 141 SVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 +VV+G D++VPVD+Y+PGCPP ALIYGI LQ+KIR Sbjct: 123 AVVKGVDQVVPVDVYIPGCPPNPAALIYGIHKLQEKIR 160 >gi|160871863|ref|ZP_02061995.1| NADH-quinone oxidoreductase chain b (nadh dehydrogenasei, chain b) (ndh-1, chain b) [Rickettsiella grylli] gi|159120662|gb|EDP46000.1| NADH-quinone oxidoreductase chain b (nadh dehydrogenasei, chain b) (ndh-1, chain b) [Rickettsiella grylli] Length = 160 Score = 237 bits (606), Expect = 5e-61, Method: Composition-based stats. Identities = 111/156 (71%), Positives = 131/156 (83%) Query: 29 ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88 I S + +GF TS D+L+ WAR+GSL M+FGLACCAVEMM ++ RYDL+RFG R Sbjct: 3 IESLLQQQGFFTTSFDKLLAWARSGSLWPMSFGLACCAVEMMHSAASRYDLDRFGVVFRP 62 Query: 89 SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 148 SPRQSDVMIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHY+YSVVRGCDR Sbjct: 63 SPRQSDVMIVAGTLCNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYAYSVVRGCDR 122 Query: 149 IVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 IVPVD+YVPGCPPTAEAL+YG++ LQ KI++ ++ Sbjct: 123 IVPVDVYVPGCPPTAEALVYGVIQLQNKIKKNHFIE 158 >gi|74317161|ref|YP_314901.1| NADH dehydrogenase subunit B [Thiobacillus denitrificans ATCC 25259] gi|123611053|sp|Q3SEX7|NUOB_THIDA RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|74056656|gb|AAZ97096.1| NADH dehydrogenase I chain B [Thiobacillus denitrificans ATCC 25259] Length = 158 Score = 237 bits (605), Expect = 5e-61, Method: Composition-based stats. Identities = 116/151 (76%), Positives = 128/151 (84%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 + +GF+ T DQL+ + RTGS+ MTFGLACCAVEMMQA RYDL+RFG R SPRQ Sbjct: 6 VLEQGFVTTKADQLINYMRTGSMWPMTFGLACCAVEMMQAGASRYDLDRFGIVFRPSPRQ 65 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 SDVMIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPV Sbjct: 66 SDVMIVAGTLCNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPV 125 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 DIYVPGCPPTAEALI+GI+ LQKKIRR + Sbjct: 126 DIYVPGCPPTAEALIFGIIQLQKKIRRTNTI 156 >gi|321259133|ref|XP_003194287.1| hypothetical protein CGB_E3580W [Cryptococcus gattii WM276] gi|317460758|gb|ADV22500.1| Conserved hypothetical protein [Cryptococcus gattii WM276] Length = 229 Score = 237 bits (605), Expect = 5e-61, Method: Composition-based stats. Identities = 108/180 (60%), Positives = 136/180 (75%) Query: 2 GLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFG 61 + + + S +L + ++ + + ++++++D++V W R GS+ MTFG Sbjct: 42 AINSYSHSPSSITPDTTLAQQGSNQLSLETPRNGAEYVLSTLDKIVNWGRQGSMWPMTFG 101 Query: 62 LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPR 121 LACCAVEMM + RYD +R G RASPRQSD+MIVAGTLTNKMA ALR+VYDQMPEPR Sbjct: 102 LACCAVEMMHMAAARYDQDRLGVVFRASPRQSDIMIVAGTLTNKMAPALRKVYDQMPEPR 161 Query: 122 YVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181 +VISMGSCANGGGYYHYSY+VVRGCDRIVPVDIYVPGCPPTAEAL+YG+L L +K+RR Sbjct: 162 WVISMGSCANGGGYYHYSYAVVRGCDRIVPVDIYVPGCPPTAEALLYGMLQLMRKMRRNR 221 >gi|57239036|ref|YP_180172.1| NADH dehydrogenase subunit B [Ehrlichia ruminantium str. Welgevonden] gi|58578978|ref|YP_197190.1| NADH dehydrogenase subunit B [Ehrlichia ruminantium str. Welgevonden] gi|58617036|ref|YP_196235.1| NADH dehydrogenase subunit B [Ehrlichia ruminantium str. Gardel] gi|75432798|sp|Q5FHF7|NUOB_EHRRG RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|81557325|sp|Q5HBM2|NUOB_EHRRW RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|57161115|emb|CAH58026.1| NADH-quinone oxidoreductase chain B [Ehrlichia ruminantium str. Welgevonden] gi|58416648|emb|CAI27761.1| NADH-ubiquinone oxidoreductase chain B [Ehrlichia ruminantium str. Gardel] gi|58417604|emb|CAI26808.1| NADH-ubiquinone oxidoreductase chain B [Ehrlichia ruminantium str. Welgevonden] gi|112434039|gb|ABI18364.1| NADH-quinone oxidoreductase chain B [Ehrlichia ruminantium] gi|112434041|gb|ABI18365.1| NADH-quinone oxidoreductase chain B [Ehrlichia ruminantium] gi|112434043|gb|ABI18366.1| NADH-quinone oxidoreductase chain B [Ehrlichia ruminantium] gi|112434045|gb|ABI18367.1| NADH-quinone oxidoreductase chain B [Ehrlichia ruminantium] gi|112434047|gb|ABI18368.1| NADH-quinone oxidoreductase chain B [Ehrlichia ruminantium] gi|112434049|gb|ABI18369.1| NADH-quinone oxidoreductase chain B [Ehrlichia ruminantium] gi|112434051|gb|ABI18370.1| NADH-quinone oxidoreductase chain B [Ehrlichia ruminantium] gi|112434053|gb|ABI18371.1| NADH-quinone oxidoreductase chain B [Ehrlichia ruminantium] gi|112434055|gb|ABI18372.1| NADH-quinone oxidoreductase chain B [Ehrlichia ruminantium] gi|112434057|gb|ABI18373.1| NADH-quinone oxidoreductase chain B [Ehrlichia ruminantium] Length = 172 Score = 237 bits (605), Expect = 5e-61, Method: Composition-based stats. Identities = 114/153 (74%), Positives = 128/153 (83%), Gaps = 4/153 (2%) Query: 34 THKGFLVTSVDQLVT----WARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS 89 H+GF+VT + L++ WAR+ SL MTFGLACCAVEMM + +YDL+R+G RAS Sbjct: 18 NHRGFMVTKLSDLMSYVSSWARSNSLWPMTFGLACCAVEMMHTAASKYDLDRYGIMFRAS 77 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQ+DVMIVAGTLTNKMA ALR+VYDQM EPRYVISMGSCANGGGYYHYSYSVVRGCDRI Sbjct: 78 PRQADVMIVAGTLTNKMAPALRKVYDQMTEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 137 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182 VPVDIYVPGCPPTAEAL+YGIL LQ+KI R Sbjct: 138 VPVDIYVPGCPPTAEALLYGILCLQQKINRTAT 170 >gi|112434037|gb|ABI18363.1| NADH-quinone oxidoreductase chain B [Ehrlichia ruminantium] Length = 171 Score = 237 bits (605), Expect = 6e-61, Method: Composition-based stats. Identities = 114/153 (74%), Positives = 128/153 (83%), Gaps = 4/153 (2%) Query: 34 THKGFLVTSVDQLVT----WARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS 89 H+GF+VT + L++ WAR+ SL MTFGLACCAVEMM + +YDL+R+G RAS Sbjct: 18 NHRGFMVTKLSDLMSYVSSWARSNSLWPMTFGLACCAVEMMHTAASKYDLDRYGIMFRAS 77 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQ+DVMIVAGTLTNKMA ALR+VYDQM EPRYVISMGSCANGGGYYHYSYSVVRGCDRI Sbjct: 78 PRQADVMIVAGTLTNKMAPALRKVYDQMTEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 137 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182 VPVDIYVPGCPPTAEAL+YGIL LQ+KI R Sbjct: 138 VPVDIYVPGCPPTAEALLYGILCLQQKINRTAT 170 >gi|169604652|ref|XP_001795747.1| hypothetical protein SNOG_05340 [Phaeosphaeria nodorum SN15] gi|160706616|gb|EAT87731.2| hypothetical protein SNOG_05340 [Phaeosphaeria nodorum SN15] Length = 229 Score = 237 bits (604), Expect = 6e-61, Method: Composition-based stats. Identities = 112/184 (60%), Positives = 128/184 (69%) Query: 1 MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTF 60 M + + + + + +T++DQ+ WAR SL MTF Sbjct: 41 MTTPATVPGNPGTPPPMKVARREVPLPSQEGKKGAIQYALTTLDQMANWARQSSLWPMTF 100 Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 GLACCAVEMM S PRYD +R G RASPRQSDVMIVAGTLTNKMA ALR+VYDQMP+P Sbjct: 101 GLACCAVEMMHLSTPRYDQDRLGIIFRASPRQSDVMIVAGTLTNKMAPALRQVYDQMPDP 160 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 R+VISMGSCANGGGYYHYSYSV RGCDRIVPVDIYVPGCPPTAEAL+YGI LQKK+R Sbjct: 161 RWVISMGSCANGGGYYHYSYSVTRGCDRIVPVDIYVPGCPPTAEALMYGIFQLQKKMRHT 220 Query: 181 GNVK 184 + Sbjct: 221 KITR 224 >gi|332285016|ref|YP_004416927.1| NADH dehydrogenase subunit B [Pusillimonas sp. T7-7] gi|330428969|gb|AEC20303.1| NADH dehydrogenase subunit B [Pusillimonas sp. T7-7] Length = 158 Score = 237 bits (604), Expect = 6e-61, Method: Composition-based stats. Identities = 111/151 (73%), Positives = 127/151 (84%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 I +GF+ TS D+ + WA+TGSL MTFGLACCAVEMM A RYDL++FG R SPRQ Sbjct: 6 IMKEGFITTSADKFLNWAKTGSLWPMTFGLACCAVEMMHAGAARYDLDQFGIIFRPSPRQ 65 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 SD+MIVAGTL NKMA ALR+VYDQMPEPR+V+SMGSCANGGGYYHYSYSVVRGCDRIVPV Sbjct: 66 SDLMIVAGTLCNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIVPV 125 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 D+YVPGCPPTAEAL+YG+L +Q KIR + Sbjct: 126 DVYVPGCPPTAEALVYGLLQMQNKIRLTNTI 156 >gi|328874905|gb|EGG23270.1| NADH-ubiquinone oxidoreductase 20 kDa subunit [Dictyostelium fasciculatum] Length = 179 Score = 237 bits (604), Expect = 7e-61, Method: Composition-based stats. Identities = 114/173 (65%), Positives = 135/173 (78%) Query: 11 ISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMM 70 ++ Q+ L K+ A + + + +++ +D LV WARTGS MTFGLACCAVEMM Sbjct: 1 MASQAGQHLSKLLASSFKAAPPSSVPEIVISKLDGLVNWARTGSFWPMTFGLACCAVEMM 60 Query: 71 QASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCA 130 RYD++RFG PRASPRQSD +IVAGTLTNKMA ALR+VYDQMP PRYVISMGSCA Sbjct: 61 HGYAARYDMDRFGVIPRASPRQSDCIIVAGTLTNKMAPALRKVYDQMPNPRYVISMGSCA 120 Query: 131 NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 NGGGYYHYSYSVVRGCDRI+PVD+Y+PGCPPTAEA +YGIL LQKKI+R + Sbjct: 121 NGGGYYHYSYSVVRGCDRIIPVDVYIPGCPPTAEAFVYGILQLQKKIQREQAL 173 >gi|302904283|ref|XP_003049034.1| hypothetical protein NECHADRAFT_82494 [Nectria haematococca mpVI 77-13-4] gi|256729969|gb|EEU43321.1| hypothetical protein NECHADRAFT_82494 [Nectria haematococca mpVI 77-13-4] Length = 206 Score = 237 bits (604), Expect = 7e-61, Method: Composition-based stats. Identities = 113/186 (60%), Positives = 132/186 (70%), Gaps = 4/186 (2%) Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKG----FLVTSVDQLVTWARTGSLMWM 58 + ++ S S +K + SE + V S+D + WAR GSL M Sbjct: 16 VAPAASSMLPRTVSTSSKKPPRVEMALQSENQKPSSIAEYAVASLDIIANWARQGSLWPM 75 Query: 59 TFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMP 118 TFGLACCAVEMM + PRYD +RFGF RASPR +D+MIVAGT+TNKMA ALR+VYDQM Sbjct: 76 TFGLACCAVEMMHIAGPRYDQDRFGFMFRASPRHADIMIVAGTVTNKMAPALRQVYDQMA 135 Query: 119 EPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 +PR+VISMGSCANGGGYYHYSYSVVRG DRIVPVDIYVPGCPPT EALIYG+ LQ+KIR Sbjct: 136 DPRWVISMGSCANGGGYYHYSYSVVRGVDRIVPVDIYVPGCPPTCEALIYGMFQLQRKIR 195 Query: 179 RVGNVK 184 R + Sbjct: 196 RTKTSR 201 >gi|242015738|ref|XP_002428504.1| NADH-ubiquinone oxidoreductase 20 kDa subunit, putative [Pediculus humanus corporis] gi|212513138|gb|EEB15766.1| NADH-ubiquinone oxidoreductase 20 kDa subunit, putative [Pediculus humanus corporis] Length = 214 Score = 237 bits (604), Expect = 7e-61, Method: Composition-based stats. Identities = 101/167 (60%), Positives = 125/167 (74%) Query: 12 SGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQ 71 + + + +S +++ D + WAR S+ +TFGLACCAVEMM Sbjct: 37 ATDCQPTQDVPRKPYSPFQDTKNLGEYVLARTDDFINWARKSSIFPLTFGLACCAVEMMH 96 Query: 72 ASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCAN 131 + PRYD++RFG RASPRQ+D++IVAGTLTNKMA LR++YDQM P++VISMGSCAN Sbjct: 97 MAAPRYDMDRFGVVFRASPRQADLIIVAGTLTNKMAPLLRKIYDQMLSPKWVISMGSCAN 156 Query: 132 GGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 GGGYYHYSYSVVRGCDRI+PVDIYVPGCPPTAEAL+Y +LLLQKKI+ Sbjct: 157 GGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALLYAVLLLQKKIK 203 >gi|259486449|tpe|CBF84294.1| TPA: hypothetical protein ANIA_11251 [Aspergillus nidulans FGSC A4] Length = 211 Score = 237 bits (604), Expect = 8e-61, Method: Composition-based stats. Identities = 104/150 (69%), Positives = 120/150 (80%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP 90 + +++T D L++WAR GS ++F LACC VEMM SMPRYD +R G RASP Sbjct: 53 EKSNKLDYVLTKTDALISWARNGSFWPLSFALACCGVEMMHTSMPRYDQDRLGIIFRASP 112 Query: 91 RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150 RQ+DVMIVAGTLTNKMA ALR++YDQMPEPR+VISMGSCANGGGYYHYSYSVVRG DRIV Sbjct: 113 RQADVMIVAGTLTNKMAPALRQLYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGVDRIV 172 Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 PVD+YVPGCPP EAL+ GI LQ+KIRR Sbjct: 173 PVDVYVPGCPPMPEALLQGIFTLQRKIRRT 202 >gi|226372608|gb|ACO51929.1| NADH dehydrogenase iron-sulfur protein 7, mitochondrial precursor [Rana catesbeiana] Length = 217 Score = 237 bits (604), Expect = 8e-61, Method: Composition-based stats. Identities = 123/172 (71%), Positives = 137/172 (79%), Gaps = 3/172 (1%) Query: 4 TTVNQKIISGQSSCSLEKVDADFSRISSEITHKG-FLVTSVDQLVTWARTGSLMWMTFGL 62 T N+ IS S +K A + SS + KG F+VT +D LV+WAR SL MTFGL Sbjct: 33 TADNENSISA--SLVRQKSGAVPATKSSVPSGKGEFIVTKLDDLVSWARRSSLWPMTFGL 90 Query: 63 ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122 ACCAVEMM + PRYD++RFG RASPRQ+DVMIVAGTLTNKMA ALR+VYDQMPEPRY Sbjct: 91 ACCAVEMMHMAAPRYDMDRFGVVFRASPRQADVMIVAGTLTNKMAPALRKVYDQMPEPRY 150 Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQ 174 V+SMGSCANGGGYYHYSYSVVRGCD IVPVDIYVPGCPPTAEAL+YGIL LQ Sbjct: 151 VVSMGSCANGGGYYHYSYSVVRGCDGIVPVDIYVPGCPPTAEALLYGILQLQ 202 >gi|294788083|ref|ZP_06753327.1| NADH dehydrogenase (ubiquinone), B subunit [Simonsiella muelleri ATCC 29453] gi|294484376|gb|EFG32059.1| NADH dehydrogenase (ubiquinone), B subunit [Simonsiella muelleri ATCC 29453] Length = 159 Score = 236 bits (603), Expect = 8e-61, Method: Composition-based stats. Identities = 108/151 (71%), Positives = 127/151 (84%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 + +KGF+ S D ++ + RTGSL +TFGLACCAVEMM A M RYDL+RFG R SPRQ Sbjct: 6 VLNKGFVTASADTVLNYVRTGSLWPVTFGLACCAVEMMHAGMARYDLDRFGIIFRPSPRQ 65 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 SD+MIVAGTLTNKMA ALRRVYDQM EPR+V+SMG+CANGGGYYHYSYSVVRG DR+VPV Sbjct: 66 SDLMIVAGTLTNKMAPALRRVYDQMAEPRWVLSMGTCANGGGYYHYSYSVVRGADRVVPV 125 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 D+YVPGCPPTAEAL+YG++ LQ KI+R + Sbjct: 126 DVYVPGCPPTAEALLYGLIQLQGKIKRTCTI 156 >gi|301107944|ref|XP_002903054.1| NADH ubiquinone oxidoreductase, putative [Phytophthora infestans T30-4] gi|262098172|gb|EEY56224.1| NADH ubiquinone oxidoreductase, putative [Phytophthora infestans T30-4] Length = 205 Score = 236 bits (603), Expect = 9e-61, Method: Composition-based stats. Identities = 105/146 (71%), Positives = 124/146 (84%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 ++V+ VD LV W R SL +TFGLACCAVEMM ++ RYD ER G RASPRQ+DVMI Sbjct: 54 YVVSRVDDLVNWGRKSSLWPITFGLACCAVEMMHSAGSRYDFERMGMVFRASPRQTDVMI 113 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGTLTNKMA ALRRVYDQMPEPRYV+SMGSCANGGGYYHYSY+VVRG DR++PVDIYVP Sbjct: 114 VAGTLTNKMAPALRRVYDQMPEPRYVVSMGSCANGGGYYHYSYAVVRGADRVIPVDIYVP 173 Query: 158 GCPPTAEALIYGILLLQKKIRRVGNV 183 GCPPTAEAL++G++ LQKK++ ++ Sbjct: 174 GCPPTAEALLFGLMQLQKKVKGNKSL 199 >gi|237746750|ref|ZP_04577230.1| NADH-quinone oxidoreductase subunit B [Oxalobacter formigenes HOxBLS] gi|229378101|gb|EEO28192.1| NADH-quinone oxidoreductase subunit B [Oxalobacter formigenes HOxBLS] Length = 159 Score = 236 bits (603), Expect = 9e-61, Method: Composition-based stats. Identities = 105/151 (69%), Positives = 127/151 (84%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 + +KGF+ T++D + W RTGS+ ++FGLACCA+EMM +S RYD++RFG RASPRQ Sbjct: 6 LLNKGFVTTTLDTAINWLRTGSVWPVSFGLACCAIEMMHSSASRYDMDRFGTFFRASPRQ 65 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 SD+MIVAGTL NKMA ALR+VYDQM EPR+V+SMGSCANGGGYYH SYSVVRGCDRIVPV Sbjct: 66 SDLMIVAGTLCNKMAPALRKVYDQMAEPRWVVSMGSCANGGGYYHDSYSVVRGCDRIVPV 125 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 DIYVPGCPPTAEAL+Y ++ L+ KIRR + Sbjct: 126 DIYVPGCPPTAEALLYALMQLRGKIRRTSTI 156 >gi|301107922|ref|XP_002903043.1| NADH ubiquinone oxidoreductase, putative [Phytophthora infestans T30-4] gi|262098161|gb|EEY56213.1| NADH ubiquinone oxidoreductase, putative [Phytophthora infestans T30-4] Length = 205 Score = 236 bits (603), Expect = 9e-61, Method: Composition-based stats. Identities = 105/146 (71%), Positives = 124/146 (84%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 ++V+ VD LV W R SL +TFGLACCAVEMM ++ RYD ER G RASPRQ+DVMI Sbjct: 54 YVVSRVDDLVNWGRKSSLWPITFGLACCAVEMMHSAGSRYDFERMGMVFRASPRQTDVMI 113 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGTLTNKMA ALRRVYDQMPEPRYV+SMGSCANGGGYYHYSY+VVRG DR++PVDIYVP Sbjct: 114 VAGTLTNKMAPALRRVYDQMPEPRYVVSMGSCANGGGYYHYSYAVVRGADRVIPVDIYVP 173 Query: 158 GCPPTAEALIYGILLLQKKIRRVGNV 183 GCPPTAEAL++G++ LQKK++ ++ Sbjct: 174 GCPPTAEALLFGLMQLQKKVKGNKSL 199 >gi|293603920|ref|ZP_06686335.1| NADH-quinone oxidoreductase subunit B [Achromobacter piechaudii ATCC 43553] gi|311104659|ref|YP_003977512.1| NADH-quinone oxidoreductase subunit B [Achromobacter xylosoxidans A8] gi|218528077|sp|A9II02|NUOB_BORPD RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|292817757|gb|EFF76823.1| NADH-quinone oxidoreductase subunit B [Achromobacter piechaudii ATCC 43553] gi|310759348|gb|ADP14797.1| NADH-quinone oxidoreductase, B subunit [Achromobacter xylosoxidans A8] gi|317401989|gb|EFV82589.1| NADH-ubiquinone oxidoreductase [Achromobacter xylosoxidans C54] Length = 158 Score = 236 bits (603), Expect = 9e-61, Method: Composition-based stats. Identities = 110/151 (72%), Positives = 127/151 (84%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 I +GF+ TS D+ + WA+TGS+ MTFGLACCAVEMM A RYDL++FG R SPRQ Sbjct: 6 ILKQGFITTSADKFLNWAKTGSMWPMTFGLACCAVEMMHAGAARYDLDQFGIIFRPSPRQ 65 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 SD+MIVAGTL NKMA ALR+VYDQMPEPR+V+SMGSCANGGGYYHYSYSVVRGCDRIVPV Sbjct: 66 SDLMIVAGTLCNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIVPV 125 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 D+YVPGCPPTAEAL+YG+L +Q KIR + Sbjct: 126 DVYVPGCPPTAEALVYGLLQMQNKIRLTNTI 156 >gi|330913880|ref|XP_003296406.1| hypothetical protein PTT_06502 [Pyrenophora teres f. teres 0-1] gi|311331451|gb|EFQ95498.1| hypothetical protein PTT_06502 [Pyrenophora teres f. teres 0-1] Length = 230 Score = 236 bits (603), Expect = 9e-61, Method: Composition-based stats. Identities = 117/185 (63%), Positives = 133/185 (71%), Gaps = 4/185 (2%) Query: 4 TTVNQKIISGQSSCSLEKVDADFS-RISSEITHKG---FLVTSVDQLVTWARTGSLMWMT 59 T I G +A + S+ KG + +T++DQ+ WAR SL MT Sbjct: 41 TMKTPATIPGNPGTPPPMKNARVEVPLPSQEGKKGAMQYALTTLDQVANWARQSSLWPMT 100 Query: 60 FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119 FGLACCAVEMM S PRYD +R G RASPRQSDVMIVAGTLTNKMA ALR+VYDQMP+ Sbjct: 101 FGLACCAVEMMHLSTPRYDQDRLGIIFRASPRQSDVMIVAGTLTNKMAPALRQVYDQMPD 160 Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179 PR+VISMGSCANGGGYYHYSYSV RGCDRIVPVDIYVPGCPPTAEAL+YG+ LQKK+R Sbjct: 161 PRWVISMGSCANGGGYYHYSYSVTRGCDRIVPVDIYVPGCPPTAEALMYGVFQLQKKMRH 220 Query: 180 VGNVK 184 + Sbjct: 221 TKITR 225 >gi|301107924|ref|XP_002903044.1| NADH ubiquinone oxidoreductase, putative [Phytophthora infestans T30-4] gi|262098162|gb|EEY56214.1| NADH ubiquinone oxidoreductase, putative [Phytophthora infestans T30-4] Length = 213 Score = 236 bits (603), Expect = 1e-60, Method: Composition-based stats. Identities = 103/146 (70%), Positives = 122/146 (83%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 + V+ +D LV W R SL ++FGLACCAVEMM A+ RYD ER G RASPRQ+DVMI Sbjct: 62 YAVSRLDDLVNWGRKSSLWPISFGLACCAVEMMHAAGSRYDFERMGMVFRASPRQTDVMI 121 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGTLTNKMA ALRR+YDQMPEPRYV+S+GSCANGGGYYHYSY+V RG DR+VPVDIYVP Sbjct: 122 VAGTLTNKMAPALRRIYDQMPEPRYVVSLGSCANGGGYYHYSYAVARGVDRVVPVDIYVP 181 Query: 158 GCPPTAEALIYGILLLQKKIRRVGNV 183 GCPPT+EALI+G++ LQKKI+ ++ Sbjct: 182 GCPPTSEALIFGLMQLQKKIKGNKSL 207 >gi|255941166|ref|XP_002561352.1| Pc16g10420 [Penicillium chrysogenum Wisconsin 54-1255] gi|211585975|emb|CAP93712.1| Pc16g10420 [Penicillium chrysogenum Wisconsin 54-1255] Length = 209 Score = 236 bits (603), Expect = 1e-60, Method: Composition-based stats. Identities = 107/155 (69%), Positives = 126/155 (81%), Gaps = 1/155 (0%) Query: 30 SSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS 89 S + G+L+ + DQLV W R GSL ++FGLACC +EMM SMPRYD +R G RAS Sbjct: 51 SEKDGASGYLLYA-DQLVNWGRQGSLWPLSFGLACCGIEMMHTSMPRYDQDRLGIIFRAS 109 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQ+DVMIVAGT+ NKMA A+R++YDQMPEP++VISMGSCANGGGYYHYSY+VVRG DRI Sbjct: 110 PRQADVMIVAGTVVNKMAPAVRQLYDQMPEPKWVISMGSCANGGGYYHYSYNVVRGVDRI 169 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 VPVDIYVPGCPPTAEAL+ GI LLQKK+RR + Sbjct: 170 VPVDIYVPGCPPTAEALLQGIFLLQKKMRRTQVTR 204 >gi|310800125|gb|EFQ35018.1| NADH-quinone oxidoreductase [Glomerella graminicola M1.001] Length = 201 Score = 236 bits (602), Expect = 1e-60, Method: Composition-based stats. Identities = 110/165 (66%), Positives = 126/165 (76%) Query: 20 EKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDL 79 E+ + + +TS+D + WAR SL MTFGLACCAVEMM S PRYD Sbjct: 32 ERKEVPLPSQEGTKGVMQYALTSLDVITNWARQSSLWPMTFGLACCAVEMMHLSTPRYDQ 91 Query: 80 ERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS 139 +R G RASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYS Sbjct: 92 DRLGIIFRASPRQSDVMIVAGTLTNKMAPALRQVYDQMPEPRWVISMGSCANGGGYYHYS 151 Query: 140 YSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 YSVVRGCDR+VPVD+YVPGCPPT+EAL+YGI LQ+K+R + Sbjct: 152 YSVVRGCDRVVPVDVYVPGCPPTSEALMYGIFQLQRKMRNTKITR 196 >gi|237748890|ref|ZP_04579370.1| NADH-quinone oxidoreductase subunit B [Oxalobacter formigenes OXCC13] gi|229380252|gb|EEO30343.1| NADH-quinone oxidoreductase subunit B [Oxalobacter formigenes OXCC13] Length = 159 Score = 236 bits (602), Expect = 1e-60, Method: Composition-based stats. Identities = 106/151 (70%), Positives = 128/151 (84%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 + KGF+ T++D + W RTGS+ +TFGLACCA+EMM +SMPRYD++RFG RASPRQ Sbjct: 6 LMDKGFVTTTLDTAINWLRTGSVWPVTFGLACCAIEMMHSSMPRYDMDRFGTFFRASPRQ 65 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 SD+MIVAGTL NKMA ALR+VYDQM EPR+V+SMGSCANGGGYYH SYSVVRGCD+IVPV Sbjct: 66 SDLMIVAGTLCNKMAPALRKVYDQMAEPRWVVSMGSCANGGGYYHDSYSVVRGCDKIVPV 125 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 DIYVPGCPPTAEAL+Y ++ L+ KI+R + Sbjct: 126 DIYVPGCPPTAEALLYALIQLRTKIKRTSTI 156 >gi|62263125|gb|AAX78129.1| unknown protein [synthetic construct] Length = 193 Score = 235 bits (601), Expect = 1e-60, Method: Composition-based stats. Identities = 112/165 (67%), Positives = 128/165 (77%) Query: 19 LEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78 ++ D + +KGF+ S D L+ W RTGSL +T GLACCAVEMM A RYD Sbjct: 17 IDDDDKHMLEVGIGNENKGFITASADALINWVRTGSLWPVTTGLACCAVEMMHAGAARYD 76 Query: 79 LERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY 138 L+RFG R SPRQSDV+IVAGTL NKMA ALR+VYDQMP+P++VISMGSCANGGGYYHY Sbjct: 77 LDRFGIVFRPSPRQSDVLIVAGTLCNKMAPALRQVYDQMPDPKWVISMGSCANGGGYYHY 136 Query: 139 SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 SYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGI+ LQ KI R + Sbjct: 137 SYSVVRGCDRIVPVDIYVPGCPPTAEALVYGIIQLQNKIIRKDTI 181 >gi|270008238|gb|EFA04686.1| hypothetical protein TcasGA2_TC014482 [Tribolium castaneum] Length = 204 Score = 235 bits (601), Expect = 2e-60, Method: Composition-based stats. Identities = 105/174 (60%), Positives = 136/174 (78%), Gaps = 4/174 (2%) Query: 11 ISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMM 70 I +S+C + + F + +++ +D L+ W R S+ +TFGLACCA+EMM Sbjct: 28 IRCESTCPERRPYSPFRPKNQT----EWVLARLDDLLNWGRKTSMWPLTFGLACCAIEMM 83 Query: 71 QASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCA 130 + PRYD++R+G RASPRQ++V+IVAGT+TNKMA++LR+VYDQMPEPR+VISMGSCA Sbjct: 84 HIAAPRYDMDRYGVVFRASPRQTEVIIVAGTVTNKMAASLRKVYDQMPEPRWVISMGSCA 143 Query: 131 NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 NGGGYYHYSYSVVRGC+RI+PVDIYVPGCPPTAEAL+YGIL LQKK+ R ++ Sbjct: 144 NGGGYYHYSYSVVRGCNRIIPVDIYVPGCPPTAEALMYGILQLQKKVNRHNAIQ 197 >gi|189196624|ref|XP_001934650.1| NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial precursor [Pyrenophora tritici-repentis Pt-1C-BFP] gi|187980529|gb|EDU47155.1| NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial precursor [Pyrenophora tritici-repentis Pt-1C-BFP] Length = 209 Score = 235 bits (601), Expect = 2e-60, Method: Composition-based stats. Identities = 112/184 (60%), Positives = 128/184 (69%) Query: 1 MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTF 60 M +V+ + + +T++DQ+ WAR SL MTF Sbjct: 21 MKTPATIPGNPGTPPPMKKARVEVPLPSQEGKKGAMQYALTTLDQVANWARQSSLWPMTF 80 Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 GLACCAVEMM S PRYD +R G RASPRQSDVMIVAGTLTNKMA ALR+VYDQMP+P Sbjct: 81 GLACCAVEMMHLSTPRYDQDRLGIIFRASPRQSDVMIVAGTLTNKMAPALRQVYDQMPDP 140 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 R+VISMGSCANGGGYYHYSYSV RGCDRIVPVDIYVPGCPPTAEAL+YG+ LQKK+R Sbjct: 141 RWVISMGSCANGGGYYHYSYSVTRGCDRIVPVDIYVPGCPPTAEALMYGVFQLQKKMRHT 200 Query: 181 GNVK 184 + Sbjct: 201 KITR 204 >gi|114053179|ref|NP_001040530.1| NADH-ubiquinone oxidoreductase 20 kDa subunit precursor [Bombyx mori] gi|95102896|gb|ABF51389.1| NADH-ubiquinone oxidoreductase 20 kDa subunit precursor [Bombyx mori] Length = 235 Score = 235 bits (601), Expect = 2e-60, Method: Composition-based stats. Identities = 99/147 (67%), Positives = 122/147 (82%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 ++V D ++ W R S+ +TFGLACCA+EMM + PRYD++R G R +PRQ+DV+I Sbjct: 84 WVVARADDILNWGRRNSVWPLTFGLACCALEMMHYAGPRYDMDRLGMVFRGTPRQTDVII 143 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGT+TNKMA ALR+ YD MPEPR+V+SMGSCANGGGYYHY+YS VRGCDRIVPVDIYVP Sbjct: 144 VAGTVTNKMAPALRKTYDLMPEPRWVVSMGSCANGGGYYHYTYSTVRGCDRIVPVDIYVP 203 Query: 158 GCPPTAEALIYGILLLQKKIRRVGNVK 184 GCPPTAEAL+YG+L LQKKI+R+ V+ Sbjct: 204 GCPPTAEALLYGMLQLQKKIKRMRVVQ 230 >gi|307006579|gb|ADN23574.1| NADH-ubiquinone oxidoreductase NUFS7/PSST/20 kDa subunit [Hyalomma marginatum rufipes] Length = 182 Score = 235 bits (600), Expect = 2e-60, Method: Composition-based stats. Identities = 107/177 (60%), Positives = 128/177 (72%) Query: 8 QKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAV 67 K SS K + F + D ++ W R SL +TFGLACCAV Sbjct: 1 SKSSEPVSSEPEVKQPWRPYSPAKPANMVEFALARADDILAWGRKTSLWPLTFGLACCAV 60 Query: 68 EMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMG 127 EMM + PRYD++R+G RASPRQ+DV+IVAGT+TNKMA ALR+VYDQM EP++VIS G Sbjct: 61 EMMHIAAPRYDMDRYGVVFRASPRQADVIIVAGTVTNKMAPALRKVYDQMLEPKWVISTG 120 Query: 128 SCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 SCANGGGYYHYSYSVVRGCDRI+PVDIYVPGCPPTAEAL+YGIL LQ+KI+R+ + Sbjct: 121 SCANGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALMYGILQLQRKIKRLNLTQ 177 >gi|42520927|ref|NP_966842.1| NADH dehydrogenase subunit B [Wolbachia endosymbiont of Drosophila melanogaster] gi|58698296|ref|ZP_00373213.1| NADH-quinone oxidoreductase, B subunit [Wolbachia endosymbiont of Drosophila ananassae] gi|225630974|ref|YP_002727765.1| NADH dehydrogenase I, B subunit [Wolbachia sp. wRi] gi|225631316|ref|ZP_03787991.1| NADH dehydrogenase I, B subunit [Wolbachia endosymbiont of Muscidifurax uniraptor] gi|81652220|sp|Q73G42|NUOB_WOLPM RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|254767799|sp|C0R4Y2|NUOB_WOLWR RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|42410668|gb|AAS14776.1| NADH dehydrogenase I, B subunit [Wolbachia endosymbiont of Drosophila melanogaster] gi|58535169|gb|EAL59251.1| NADH-quinone oxidoreductase, B subunit [Wolbachia endosymbiont of Drosophila ananassae] gi|225590991|gb|EEH12198.1| NADH dehydrogenase I, B subunit [Wolbachia endosymbiont of Muscidifurax uniraptor] gi|225592955|gb|ACN95974.1| NADH dehydrogenase I, B subunit [Wolbachia sp. wRi] Length = 168 Score = 235 bits (600), Expect = 2e-60, Method: Composition-based stats. Identities = 114/152 (75%), Positives = 129/152 (84%), Gaps = 4/152 (2%) Query: 35 HKGFLVTSV----DQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP 90 +GFLVT D ++ WAR+GSL MTFGLACCAVEMM + RYDL+R+G RASP Sbjct: 16 KEGFLVTKFGDLTDYVMNWARSGSLWPMTFGLACCAVEMMHTASSRYDLDRYGIMFRASP 75 Query: 91 RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150 RQSDVMIVAGTLTNKMA+ALR+VYDQM +P+YVISMGSCANGGGYYHYSYSVVRGCDRIV Sbjct: 76 RQSDVMIVAGTLTNKMAAALRKVYDQMADPKYVISMGSCANGGGYYHYSYSVVRGCDRIV 135 Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182 PVD+YVPGCPPTAEAL+YG+L LQ KI+R N Sbjct: 136 PVDVYVPGCPPTAEALLYGMLCLQNKIKRTRN 167 >gi|260223141|emb|CBA33408.1| NADH-quinone oxidoreductase subunit B [Curvibacter putative symbiont of Hydra magnipapillata] Length = 158 Score = 235 bits (600), Expect = 2e-60, Method: Composition-based stats. Identities = 113/152 (74%), Positives = 130/152 (85%), Gaps = 1/152 (0%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPR 91 + ++GF+ TS D +V WA+TGS+ MTFGLACCAVEMM A+ RYD+ RFG RASPR Sbjct: 4 VLNEGFVTTSYDSVVNWAKTGSIWPMTFGLACCAVEMMHAAAARYDISRFGSEVFRASPR 63 Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151 QSD+MIVAGTL NKMA ALR+VYDQM EPR+V+SMGSCANGGGYYHYSYSVVRGCDRIVP Sbjct: 64 QSDLMIVAGTLCNKMAPALRKVYDQMSEPRWVLSMGSCANGGGYYHYSYSVVRGCDRIVP 123 Query: 152 VDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 VD+YVPGCPPTAEAL+YGIL LQ+KIRR + Sbjct: 124 VDVYVPGCPPTAEALLYGILQLQQKIRRTQTI 155 >gi|158291431|ref|XP_312939.3| AGAP003231-PA [Anopheles gambiae str. PEST] gi|157017771|gb|EAA08348.4| AGAP003231-PA [Anopheles gambiae str. PEST] Length = 220 Score = 235 bits (600), Expect = 2e-60, Method: Composition-based stats. Identities = 108/155 (69%), Positives = 129/155 (83%) Query: 30 SSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS 89 + + + V +D L+ W R GS+ FGLACCA+EMMQA+ PRYD++RFG RAS Sbjct: 61 AKQSNTAEWTVARLDDLLNWGRKGSMWPTMFGLACCAMEMMQAAAPRYDIDRFGVLFRAS 120 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQ+D +IVAGTLTNKMA ALR++YDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRI Sbjct: 121 PRQTDFIIVAGTLTNKMAPALRKIYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRI 180 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 +PVDIYVPGCPPTAEALIYG+L LQKK++R+ V+ Sbjct: 181 IPVDIYVPGCPPTAEALIYGVLQLQKKVKRMKTVQ 215 >gi|167627154|ref|YP_001677654.1| NADH dehydrogenase subunit B [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|238065146|sp|B0TWP5|NUOB_FRAP2 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|167597155|gb|ABZ87153.1| NADH dehydrogenase (quinone) [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 158 Score = 235 bits (600), Expect = 2e-60, Method: Composition-based stats. Identities = 110/150 (73%), Positives = 124/150 (82%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93 +KGF+ S D L+ W RTGSL +T GLACCAVEMM A RYDL+RFG R SPRQS Sbjct: 6 ENKGFITASADALINWVRTGSLWPVTTGLACCAVEMMHAGAARYDLDRFGIVFRPSPRQS 65 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD 153 DV+IVAGTL NKMA ALR+VYDQMP+P++VISMGSCANGGGYYHYSYSVVRGCDRI+PVD Sbjct: 66 DVLIVAGTLCNKMAPALRQVYDQMPDPKWVISMGSCANGGGYYHYSYSVVRGCDRIIPVD 125 Query: 154 IYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 IYVPGCPPTAEAL+YGI+ LQ KI R + Sbjct: 126 IYVPGCPPTAEALVYGIIQLQNKIIRKDTI 155 >gi|187477542|ref|YP_785566.1| NADH dehydrogenase subunit B [Bordetella avium 197N] gi|123513819|sp|Q2KV17|NUOB_BORA1 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|115422128|emb|CAJ48652.1| NADH dehydrogenase I chain B [Bordetella avium 197N] Length = 158 Score = 235 bits (599), Expect = 2e-60, Method: Composition-based stats. Identities = 109/151 (72%), Positives = 126/151 (83%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 I +GF+ TS D+ + WA+TGS+ MTFGLACCAVEMM A RYDL++FG R SPRQ Sbjct: 6 ILKQGFITTSADKFINWAKTGSMWPMTFGLACCAVEMMHAGAARYDLDQFGIIFRPSPRQ 65 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 SD+MIVAGTL NKM ALR+VYDQMPEPR+V+SMGSCANGGGYYHYSYSVVRGCDRIVPV Sbjct: 66 SDLMIVAGTLCNKMGPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIVPV 125 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 D+YVPGCPPTAEAL+YG+L +Q KIR + Sbjct: 126 DVYVPGCPPTAEALVYGLLQMQNKIRLTNTI 156 >gi|121609761|ref|YP_997568.1| NADH dehydrogenase subunit B [Verminephrobacter eiseniae EF01-2] gi|218528011|sp|A1WLP3|NUOB_VEREI RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|121554401|gb|ABM58550.1| NADH-quinone oxidoreductase, B subunit [Verminephrobacter eiseniae EF01-2] Length = 159 Score = 235 bits (599), Expect = 2e-60, Method: Composition-based stats. Identities = 113/154 (73%), Positives = 129/154 (83%), Gaps = 1/154 (0%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89 + +GF+ TS D +V WA+TGSL MTFGLACCAVEM+ ++ RYDL RFG RAS Sbjct: 3 ENVMKEGFITTSYDSVVNWAKTGSLWPMTFGLACCAVEMIHSAAARYDLARFGAEVFRAS 62 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQ+D+MIVAGTL NKMA ALR+VYDQM EPR+V+SMGSCANGGGYYHYSYSVVRGCDRI Sbjct: 63 PRQADLMIVAGTLCNKMAPALRKVYDQMSEPRWVLSMGSCANGGGYYHYSYSVVRGCDRI 122 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 VPVD+YVPGCPPTAEALIYGIL LQ+KIRR + Sbjct: 123 VPVDVYVPGCPPTAEALIYGILQLQQKIRRSHTI 156 >gi|83775539|dbj|BAE65659.1| unnamed protein product [Aspergillus oryzae] Length = 172 Score = 235 bits (599), Expect = 3e-60, Method: Composition-based stats. Identities = 105/154 (68%), Positives = 124/154 (80%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP 90 +E+ + F T++DQLV WAR SL ++FGLACCAVEMMQ SMPRYD +R G RASP Sbjct: 14 TELASEIFSRTTIDQLVNWARQSSLWPLSFGLACCAVEMMQVSMPRYDQDRLGIIFRASP 73 Query: 91 RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150 RQSDVM+VAGT+TNKM ALR+ YDQMP+P++VISMGSCANGGGYYHYSYSVVRG DRIV Sbjct: 74 RQSDVMVVAGTVTNKMGPALRQCYDQMPDPKWVISMGSCANGGGYYHYSYSVVRGVDRIV 133 Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 PVD+Y+PGCPPT EA + GI LQKK+R + Sbjct: 134 PVDVYIPGCPPTPEAFLCGIFQLQKKMRHTKVTR 167 >gi|56707212|ref|YP_169108.1| NADH dehydrogenase subunit B [Francisella tularensis subsp. tularensis SCHU S4] gi|89257089|ref|YP_514451.1| NADH dehydrogenase subunit B [Francisella tularensis subsp. holarctica LVS] gi|110669682|ref|YP_666239.1| NADH dehydrogenase subunit B [Francisella tularensis subsp. tularensis FSC198] gi|115315446|ref|YP_764169.1| NADH dehydrogenase subunit B [Francisella tularensis subsp. holarctica OSU18] gi|118498240|ref|YP_899290.1| NADH dehydrogenase subunit B [Francisella tularensis subsp. novicida U112] gi|134301247|ref|YP_001121215.1| NADH dehydrogenase subunit B [Francisella tularensis subsp. tularensis WY96-3418] gi|156503303|ref|YP_001429368.1| NADH dehydrogenase subunit B [Francisella tularensis subsp. holarctica FTNF002-00] gi|167009481|ref|ZP_02274412.1| NADH-quinone oxidoreductase, b subunit family protein [Francisella tularensis subsp. holarctica FSC200] gi|187930989|ref|YP_001890973.1| NADH dehydrogenase subunit B [Francisella tularensis subsp. mediasiatica FSC147] gi|194324424|ref|ZP_03058197.1| NADH-quinone oxidoreductase, b subunit family [Francisella tularensis subsp. novicida FTE] gi|208780267|ref|ZP_03247609.1| NADH-quinone oxidoreductase, b subunit family [Francisella novicida FTG] gi|224456273|ref|ZP_03664746.1| NADH dehydrogenase subunit B [Francisella tularensis subsp. tularensis MA00-2987] gi|241667716|ref|ZP_04755294.1| NADH dehydrogenase subunit B [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254368325|ref|ZP_04984343.1| NADH dehydrogenase I, B subunit [Francisella tularensis subsp. holarctica 257] gi|254368966|ref|ZP_04984979.1| NADH-quinone oxidoreductase chain B 1 [Francisella tularensis subsp. holarctica FSC022] gi|254371428|ref|ZP_04987429.1| hypothetical protein [Francisella tularensis subsp. tularensis FSC033] gi|254373581|ref|ZP_04989067.1| NADH dehydrogenase I [Francisella tularensis subsp. novicida GA99-3549] gi|254375048|ref|ZP_04990528.1| hypothetical protein FTDG_01236 [Francisella novicida GA99-3548] gi|254874050|ref|ZP_05246760.1| NADH-quinone oxidoreductase chain B 1 [Francisella tularensis subsp. tularensis MA00-2987] gi|254876260|ref|ZP_05248970.1| NADH-quinone oxidoreductase subunit B [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|290952990|ref|ZP_06557611.1| NADH dehydrogenase subunit B [Francisella tularensis subsp. holarctica URFT1] gi|295313810|ref|ZP_06804383.1| NADH dehydrogenase subunit B [Francisella tularensis subsp. holarctica URFT1] gi|81598108|sp|Q5NIN4|NUOB_FRATT RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|122324569|sp|Q0BK52|NUOB_FRATO RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|122500210|sp|Q2A1F1|NUOB_FRATH RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|123169705|sp|Q14K37|NUOB_FRAT1 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|238065148|sp|A7NEK9|NUOB_FRATF RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|238065149|sp|A0Q8H1|NUOB_FRATN RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|238065150|sp|A4IVZ3|NUOB_FRATW RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|254767793|sp|B2SEV0|NUOB_FRATM RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|54114093|gb|AAV29680.1| NT02FT1737 [synthetic construct] gi|56603704|emb|CAG44665.1| NADH dehydrogenase I, B subunit [Francisella tularensis subsp. tularensis SCHU S4] gi|89144920|emb|CAJ80268.1| NADH dehydrogenase I, B subunit [Francisella tularensis subsp. holarctica LVS] gi|110320015|emb|CAL08048.1| NADH dehydrogenase I, B subunit [Francisella tularensis subsp. tularensis FSC198] gi|115130345|gb|ABI83532.1| NADH dehydrogenase (ubiquinone) [Francisella tularensis subsp. holarctica OSU18] gi|118424146|gb|ABK90536.1| NADH dehydrogenase I, B subunit [Francisella novicida U112] gi|134049024|gb|ABO46095.1| NADH dehydrogenase I subunit B [Francisella tularensis subsp. tularensis WY96-3418] gi|134254133|gb|EBA53227.1| NADH dehydrogenase I, B subunit [Francisella tularensis subsp. holarctica 257] gi|151569667|gb|EDN35321.1| hypothetical protein FTBG_01489 [Francisella tularensis subsp. tularensis FSC033] gi|151571305|gb|EDN36959.1| NADH dehydrogenase I [Francisella novicida GA99-3549] gi|151572766|gb|EDN38420.1| hypothetical protein FTDG_01236 [Francisella novicida GA99-3548] gi|156253906|gb|ABU62412.1| NADH-quinone oxidoreductase, subunit B [Francisella tularensis subsp. holarctica FTNF002-00] gi|157121887|gb|EDO66057.1| NADH-quinone oxidoreductase chain B 1 [Francisella tularensis subsp. holarctica FSC022] gi|187711898|gb|ACD30195.1| NADH dehydrogenase I, B subunit [Francisella tularensis subsp. mediasiatica FSC147] gi|194321489|gb|EDX18974.1| NADH-quinone oxidoreductase, b subunit family [Francisella tularensis subsp. novicida FTE] gi|208743916|gb|EDZ90218.1| NADH-quinone oxidoreductase, b subunit family [Francisella novicida FTG] gi|254840049|gb|EET18485.1| NADH-quinone oxidoreductase chain B 1 [Francisella tularensis subsp. tularensis MA00-2987] gi|254842281|gb|EET20695.1| NADH-quinone oxidoreductase subunit B [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|282158320|gb|ADA77711.1| NADH dehydrogenase subunit B [Francisella tularensis subsp. tularensis NE061598] gi|332184795|gb|AEE27049.1| NADH-ubiquinone oxidoreductase chain B [Francisella cf. novicida 3523] gi|332678976|gb|AEE88105.1| NADH-ubiquinone oxidoreductase chain B [Francisella cf. novicida Fx1] Length = 158 Score = 235 bits (599), Expect = 3e-60, Method: Composition-based stats. Identities = 111/150 (74%), Positives = 124/150 (82%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93 +KGF+ S D L+ W RTGSL +T GLACCAVEMM A RYDL+RFG R SPRQS Sbjct: 6 ENKGFITASADALINWVRTGSLWPVTTGLACCAVEMMHAGAARYDLDRFGIVFRPSPRQS 65 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD 153 DV+IVAGTL NKMA ALR+VYDQMP+P++VISMGSCANGGGYYHYSYSVVRGCDRIVPVD Sbjct: 66 DVLIVAGTLCNKMAPALRQVYDQMPDPKWVISMGSCANGGGYYHYSYSVVRGCDRIVPVD 125 Query: 154 IYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 IYVPGCPPTAEAL+YGI+ LQ KI R + Sbjct: 126 IYVPGCPPTAEALVYGIIQLQNKIIRKDTI 155 >gi|295697422|ref|YP_003590660.1| NADH-quinone oxidoreductase, B subunit [Bacillus tusciae DSM 2912] gi|295413024|gb|ADG07516.1| NADH-quinone oxidoreductase, B subunit [Bacillus tusciae DSM 2912] Length = 177 Score = 235 bits (599), Expect = 3e-60, Method: Composition-based stats. Identities = 85/151 (56%), Positives = 115/151 (76%) Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87 ++ + + ++T+++++ WAR+ S+ ++FGLACCA+EMM S YD +RFG R Sbjct: 13 QLEEKELERNVVLTTLEKVKAWARSNSMWPLSFGLACCAIEMMATSGSHYDADRFGVFFR 72 Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCD 147 ASPRQ+D+MIV+GT+T KMA LRR+YDQM EPR+VI+MGSCA GG Y SYSVV G D Sbjct: 73 ASPRQADLMIVSGTVTKKMAPLLRRLYDQMAEPRWVIAMGSCATAGGPYVRSYSVVNGVD 132 Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 +IVPVD+Y+PGCPP+ ALIYG+ LQ+KIR Sbjct: 133 QIVPVDVYIPGCPPSPVALIYGLNKLQEKIR 163 >gi|71023639|ref|XP_762049.1| hypothetical protein UM05902.1 [Ustilago maydis 521] gi|46101614|gb|EAK86847.1| hypothetical protein UM05902.1 [Ustilago maydis 521] Length = 228 Score = 235 bits (599), Expect = 3e-60, Method: Composition-based stats. Identities = 110/159 (69%), Positives = 127/159 (79%), Gaps = 2/159 (1%) Query: 27 SRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF 84 +++S E G ++++S+D++ WAR S MTFGLACCAVEMM + RYD +R G Sbjct: 64 NQLSLETPKNGVEYVLSSMDKMANWARQSSFWPMTFGLACCAVEMMHVATARYDQDRLGV 123 Query: 85 APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR 144 RASPRQSD MIVAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVR Sbjct: 124 VFRASPRQSDCMIVAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVR 183 Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 GCDRIVPVD+YVPGCPPTAEAL+YG L L +KIRR Sbjct: 184 GCDRIVPVDLYVPGCPPTAEALLYGFLQLHRKIRRNRKT 222 >gi|281202313|gb|EFA76518.1| NADH-ubiquinone oxidoreductase 20 kDa subunit [Polysphondylium pallidum PN500] Length = 178 Score = 235 bits (599), Expect = 3e-60, Method: Composition-based stats. Identities = 115/171 (67%), Positives = 133/171 (77%) Query: 13 GQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQA 72 Q+ L K+ A + + + +++ +D LV WARTGSL MTFGLACCAVEMM Sbjct: 2 AQAGQHLSKLLASSFKAAPPSSVPEIVISKLDGLVNWARTGSLWPMTFGLACCAVEMMHG 61 Query: 73 SMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANG 132 RYDL+RFG PRASPRQSD +IVAGTLTNKMA ALR+VYDQMP PRYVISMGSCANG Sbjct: 62 YAARYDLDRFGIIPRASPRQSDCIIVAGTLTNKMAPALRKVYDQMPLPRYVISMGSCANG 121 Query: 133 GGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 GGYYHYSYSVVRGCDRI+PVD+Y+PGCPPTAEA +YG+L LQKKI R + Sbjct: 122 GGYYHYSYSVVRGCDRIIPVDVYIPGCPPTAEAFVYGVLQLQKKINREQAL 172 >gi|33592008|ref|NP_879652.1| NADH dehydrogenase subunit B [Bordetella pertussis Tohama I] gi|33597910|ref|NP_885553.1| NADH dehydrogenase subunit B [Bordetella parapertussis 12822] gi|33602815|ref|NP_890375.1| NADH dehydrogenase subunit B [Bordetella bronchiseptica RB50] gi|81425363|sp|Q7VZQ4|NUOB_BORPE RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|81426432|sp|Q7W5A8|NUOB_BORPA RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|81429887|sp|Q7WCU0|NUOB_BORBR RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|33571652|emb|CAE41145.1| NADH-ubiquinone oxidoreductase, 20 kDa subunit [Bordetella pertussis Tohama I] gi|33574339|emb|CAE38675.1| NADH-ubiquinone oxidoreductase, 20 kDa subunit [Bordetella parapertussis] gi|33577257|emb|CAE35814.1| NADH-ubiquinone oxidoreductase, 20 kDa subunit [Bordetella bronchiseptica RB50] gi|332381424|gb|AEE66271.1| NADH dehydrogenase subunit B [Bordetella pertussis CS] Length = 158 Score = 235 bits (599), Expect = 3e-60, Method: Composition-based stats. Identities = 109/151 (72%), Positives = 126/151 (83%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 I +GF+ TS D+ + WA+TGS+ MTFGLACCAVEMM A RYDL++FG R SPRQ Sbjct: 6 ILKQGFITTSADKFLNWAKTGSMWPMTFGLACCAVEMMHAGAARYDLDQFGIIFRPSPRQ 65 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 SD+MIVAGTL NKM ALR+VYDQMPEPR+V+SMGSCANGGGYYHYSYSVVRGCDRIVPV Sbjct: 66 SDLMIVAGTLCNKMGPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIVPV 125 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 D+YVPGCPPTAEAL+YG+L +Q KIR + Sbjct: 126 DVYVPGCPPTAEALVYGLLQMQNKIRLTNTI 156 >gi|302928116|ref|XP_003054637.1| hypothetical protein NECHADRAFT_73438 [Nectria haematococca mpVI 77-13-4] gi|256735578|gb|EEU48924.1| hypothetical protein NECHADRAFT_73438 [Nectria haematococca mpVI 77-13-4] Length = 221 Score = 234 bits (598), Expect = 3e-60, Method: Composition-based stats. Identities = 108/180 (60%), Positives = 131/180 (72%), Gaps = 1/180 (0%) Query: 5 TVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLAC 64 ++QK S + S A + + +T++D++ WAR GS +TFGLAC Sbjct: 37 PIDQKRRSSNNDSSHPH-PAALTADVKPRDVMEYALTTLDKIAAWARNGSFWPLTFGLAC 95 Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +EMM SMPRYD +R G RASPRQSDVMIVAGT+TNKMA+A+R YDQMPEPR+VI Sbjct: 96 CGIEMMHVSMPRYDQDRLGIIFRASPRQSDVMIVAGTVTNKMATAVRLCYDQMPEPRWVI 155 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 SMGSCANGGGYYHYSYSV+RG DRI+PVDIYVPGCPPTAEAL+YG+ LQ+KIR + Sbjct: 156 SMGSCANGGGYYHYSYSVLRGVDRILPVDIYVPGCPPTAEALMYGVFQLQRKIRNTRQSR 215 >gi|50423781|ref|XP_460475.1| DEHA2F02552p [Debaryomyces hansenii CBS767] gi|49656144|emb|CAG88782.1| DEHA2F02552p [Debaryomyces hansenii] Length = 208 Score = 234 bits (598), Expect = 4e-60, Method: Composition-based stats. Identities = 105/169 (62%), Positives = 129/169 (76%), Gaps = 2/169 (1%) Query: 18 SLEKVDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMP 75 + + + DF +S + + +TS+D + WAR S +TFGLACCAVEMM S P Sbjct: 35 TPKPLATDFPLMSQKTASAPVDYALTSLDAIANWARKSSFWPVTFGLACCAVEMMHVSTP 94 Query: 76 RYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY 135 RYD +R G RASPRQSD+MIVAGT+TNKMA ALR+VYDQM +PR+VISMGSCANGGGY Sbjct: 95 RYDQDRLGIIFRASPRQSDIMIVAGTVTNKMAPALRQVYDQMADPRWVISMGSCANGGGY 154 Query: 136 YHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 YHYSYSVVRGCDR++PVD+YVPGCPPTAEAL+YG+ LQKK+ + + Sbjct: 155 YHYSYSVVRGCDRLIPVDVYVPGCPPTAEALMYGVFQLQKKMMKTRITR 203 >gi|206889652|ref|YP_002248950.1| NADH-quinone oxidoreductase chain b 2 [Thermodesulfovibrio yellowstonii DSM 11347] gi|238065044|sp|B5YL35|NUOB2_THEYD RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName: Full=NADH dehydrogenase I subunit B 2; AltName: Full=NDH-1 subunit B 2 gi|206741590|gb|ACI20647.1| NADH-quinone oxidoreductase chain b 2 [Thermodesulfovibrio yellowstonii DSM 11347] Length = 174 Score = 234 bits (597), Expect = 4e-60, Method: Composition-based stats. Identities = 86/162 (53%), Positives = 118/162 (72%), Gaps = 1/162 (0%) Query: 20 EKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDL 79 +K + + I ++T++D++V W R+ SL +TFGLACCA+EMM A DL Sbjct: 7 DKQLIEVEEGTKIIKGSNVIITTLDKVVNWGRSNSLWPLTFGLACCAIEMMAAGASHLDL 66 Query: 80 ERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS 139 +RFG RASPRQ+DV+I+AGT+T KMA ++RVYDQMPEP+YVI+MGSCA GG ++ + Sbjct: 67 DRFGILFRASPRQADVIIIAGTVTYKMAPIVKRVYDQMPEPKYVIAMGSCACTGGIFN-T 125 Query: 140 YSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181 YS V+G D+ +PVD+YVPGCPP EAL+YG+L L++KI R Sbjct: 126 YSTVQGADQFLPVDVYVPGCPPRPEALMYGVLKLKEKIMREE 167 >gi|66809217|ref|XP_638331.1| NADH-ubiquinone oxidoreductase 20 kDa subunit [Dictyostelium discoideum AX4] gi|74853922|sp|Q54NI6|NDUS7_DICDI RecName: Full=NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial; Flags: Precursor gi|60466783|gb|EAL64831.1| NADH-ubiquinone oxidoreductase 20 kDa subunit [Dictyostelium discoideum AX4] Length = 178 Score = 234 bits (597), Expect = 4e-60, Method: Composition-based stats. Identities = 116/171 (67%), Positives = 135/171 (78%) Query: 13 GQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQA 72 ++ L K+ A + + T +++ +D LV WARTGSL MTFGLACCAVEMMQ Sbjct: 2 AHNAQHLSKLLASSFKQAPPNTLPEVVISKIDGLVNWARTGSLWPMTFGLACCAVEMMQG 61 Query: 73 SMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANG 132 RYD++RFG PRASPRQSD +IVAGTLTNKMA ALR+VYDQMP PRYV+SMGSCANG Sbjct: 62 YAARYDMDRFGVIPRASPRQSDCIIVAGTLTNKMAPALRKVYDQMPNPRYVVSMGSCANG 121 Query: 133 GGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 GGYYHYSYSVVRGCDRI+PVD+Y+PGCPPTAEA +YGIL LQKKI R N+ Sbjct: 122 GGYYHYSYSVVRGCDRIIPVDVYIPGCPPTAEAFVYGILQLQKKIGREQNL 172 >gi|197120286|ref|YP_002140713.1| NADH dehydrogenase I subunit B [Geobacter bemidjiensis Bem] gi|238065151|sp|B5EFG2|NUOB_GEOBB RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|197089646|gb|ACH40917.1| NADH dehydrogenase I, B subunit [Geobacter bemidjiensis Bem] Length = 170 Score = 234 bits (596), Expect = 7e-60, Method: Composition-based stats. Identities = 80/152 (52%), Positives = 109/152 (71%), Gaps = 1/152 (0%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP 90 + + + TS+D LV WAR S+ MTFGLACCA+EMM ++DL+RFG RASP Sbjct: 4 DQPLGENIITTSLDSLVNWARKSSIWPMTFGLACCAIEMMATGAAKHDLDRFGIIFRASP 63 Query: 91 RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150 RQ+D +I+AGT+T KM ++ VY+QMPEP++V++MG+CA GG + +YSVV+G D + Sbjct: 64 RQADCIIIAGTVTKKMLPVIKTVYEQMPEPKWVVAMGACACSGGVF-DTYSVVQGIDEAL 122 Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182 PVD+Y+PGCPP EAL+YG+L LQ KI N Sbjct: 123 PVDVYIPGCPPRPEALLYGLLKLQDKIANERN 154 >gi|307611657|emb|CBX01348.1| NADH dehydrogenase I chain B [Legionella pneumophila 130b] Length = 146 Score = 233 bits (595), Expect = 7e-60, Method: Composition-based stats. Identities = 112/140 (80%), Positives = 124/140 (88%) Query: 40 VTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVA 99 +T+V++LV WAR+GS+ MTFGLACCAVEMM RYDL+RFG R SPRQSDVMIVA Sbjct: 1 MTTVEKLVGWARSGSMWPMTFGLACCAVEMMHVGAARYDLDRFGIIFRPSPRQSDVMIVA 60 Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGC 159 GTL NKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVD+YVPGC Sbjct: 61 GTLCNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGC 120 Query: 160 PPTAEALIYGILLLQKKIRR 179 PPTAEAL+YGI+ LQ KIRR Sbjct: 121 PPTAEALLYGIIQLQNKIRR 140 >gi|138896932|ref|YP_001127385.1| NADH dehydrogenase subunit B [Geobacillus thermodenitrificans NG80-2] gi|238065154|sp|A4ITI6|NUOB_GEOTN RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|134268445|gb|ABO68640.1| NADH-quinone oxidoreductase chain B [Geobacillus thermodenitrificans NG80-2] Length = 170 Score = 233 bits (595), Expect = 7e-60, Method: Composition-based stats. Identities = 92/147 (62%), Positives = 112/147 (76%) Query: 32 EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPR 91 E + T+++QL WAR+ SL +TFGLACCA+EMM YDL+RFG RASPR Sbjct: 14 EEVKRNVFFTTLEQLKGWARSNSLWPLTFGLACCAIEMMAVGGAHYDLDRFGSFFRASPR 73 Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151 QSDVMIV+GT+T KMA LRR+YDQMPEP++VI+MGSCA GG Y SYSVV+G D+IVP Sbjct: 74 QSDVMIVSGTVTKKMAPLLRRLYDQMPEPKWVIAMGSCATAGGPYVKSYSVVKGVDQIVP 133 Query: 152 VDIYVPGCPPTAEALIYGILLLQKKIR 178 VD+Y+PGCPP ALIYGI L++KIR Sbjct: 134 VDVYIPGCPPNPAALIYGIHKLKEKIR 160 >gi|39995448|ref|NP_951399.1| NADH dehydrogenase I subunit B [Geobacter sulfurreducens PCA] gi|81703477|sp|Q74GA7|NUOB_GEOSL RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|39982211|gb|AAR33672.1| NADH dehydrogenase I, B subunit [Geobacter sulfurreducens PCA] gi|298504447|gb|ADI83170.1| NADH dehydrogenase I, B subunit [Geobacter sulfurreducens KN400] Length = 170 Score = 233 bits (595), Expect = 7e-60, Method: Composition-based stats. Identities = 82/152 (53%), Positives = 108/152 (71%), Gaps = 1/152 (0%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP 90 + F+ TS+D LV WAR S+ MTFGLACCA+EMM DL+RFG RASP Sbjct: 4 DQPLGDNFITTSLDSLVNWARKSSIWPMTFGLACCAIEMMATGASHNDLDRFGIIFRASP 63 Query: 91 RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150 RQSD +I+AGT+T KM ++ VY+QMPEP++V++MG+CA GG + +YSVV+G D + Sbjct: 64 RQSDCIIIAGTVTKKMLPVIKTVYEQMPEPKWVVAMGACACSGGVF-DTYSVVQGIDTAL 122 Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182 PVD+Y+PGCPP EAL+YG+L LQ KI + N Sbjct: 123 PVDVYIPGCPPRPEALLYGLLKLQDKIMKDKN 154 >gi|226315029|ref|YP_002774925.1| NADH dehydrogenase subunit B [Brevibacillus brevis NBRC 100599] gi|259514656|sp|C0Z772|NUOB_BREBN RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|226097979|dbj|BAH46421.1| NADH-quinone oxidoreductase chain B [Brevibacillus brevis NBRC 100599] Length = 172 Score = 233 bits (595), Expect = 7e-60, Method: Composition-based stats. Identities = 92/148 (62%), Positives = 113/148 (76%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP 90 E ++ + T+++ + W R+ SL +TFGLACCA+EMM RYDL+RFG RASP Sbjct: 13 QEELNRNVMFTTLETVKGWVRSNSLWPLTFGLACCAIEMMGTGGARYDLDRFGVIFRASP 72 Query: 91 RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150 RQSDVMIVAGT+T KMA LRR+YDQMPEP++VI+MGSCA GG Y SYSVV+G D+IV Sbjct: 73 RQSDVMIVAGTVTKKMAPLLRRLYDQMPEPKWVIAMGSCATAGGPYVRSYSVVKGVDQIV 132 Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIR 178 PVD+Y+PGCPP ALIYGI LQ+KIR Sbjct: 133 PVDVYIPGCPPNPAALIYGINKLQEKIR 160 >gi|332528752|ref|ZP_08404729.1| NADH dehydrogenase subunit B [Hylemonella gracilis ATCC 19624] gi|332041818|gb|EGI78167.1| NADH dehydrogenase subunit B [Hylemonella gracilis ATCC 19624] Length = 159 Score = 233 bits (595), Expect = 8e-60, Method: Composition-based stats. Identities = 114/152 (75%), Positives = 129/152 (84%), Gaps = 1/152 (0%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPR 91 + +GF+ TS D +V WA+TGSL MTFGLACCAVEMM A+ RYD+ RFG RASPR Sbjct: 5 VLKEGFVTTSYDTVVNWAKTGSLWPMTFGLACCAVEMMHAAAARYDIARFGSEVFRASPR 64 Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151 QSD+MIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVP Sbjct: 65 QSDLMIVAGTLCNKMAPALRKVYDQMSEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVP 124 Query: 152 VDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 VD+YVPGCPPTAEALIYGI+ LQ+K+RR + Sbjct: 125 VDVYVPGCPPTAEALIYGIIQLQQKVRRTQTI 156 >gi|241763289|ref|ZP_04761346.1| NADH-quinone oxidoreductase, B subunit [Acidovorax delafieldii 2AN] gi|241367564|gb|EER61851.1| NADH-quinone oxidoreductase, B subunit [Acidovorax delafieldii 2AN] Length = 159 Score = 233 bits (595), Expect = 8e-60, Method: Composition-based stats. Identities = 114/152 (75%), Positives = 129/152 (84%), Gaps = 1/152 (0%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPR 91 + +GF+ TS D +V WA+TGSL MTFGLACCAVEMM A+ RYD+ RFG RASPR Sbjct: 5 VMKEGFITTSYDSVVNWAKTGSLWPMTFGLACCAVEMMHAAAARYDIGRFGAEVFRASPR 64 Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151 QSD+MIVAGTL NKMA ALR+VYDQM EPR+V+SMGSCANGGGYYHYSYSVVRGCDRIVP Sbjct: 65 QSDLMIVAGTLCNKMAPALRKVYDQMSEPRWVLSMGSCANGGGYYHYSYSVVRGCDRIVP 124 Query: 152 VDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 VD+YVPGCPPTAEALIYGI+ LQ+KIRR + Sbjct: 125 VDVYVPGCPPTAEALIYGIIQLQQKIRRTNTI 156 >gi|222475044|ref|YP_002563459.1| NADH dehydrogenase I chain B (nuoB) [Anaplasma marginale str. Florida] gi|238065053|sp|B9KI91|NUOB_ANAMF RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|222419180|gb|ACM49203.1| NADH dehydrogenase I chain B (nuoB) [Anaplasma marginale str. Florida] Length = 190 Score = 233 bits (595), Expect = 8e-60, Method: Composition-based stats. Identities = 116/149 (77%), Positives = 128/149 (85%), Gaps = 4/149 (2%) Query: 35 HKGFLVTS----VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP 90 +GF+VT VD +V W+R+GSL MTFGLACCAVEMM + RYDL+R+G RASP Sbjct: 34 DRGFVVTKFSDLVDSVVRWSRSGSLWPMTFGLACCAVEMMHTAASRYDLDRYGVMFRASP 93 Query: 91 RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150 RQ+DVMIVAGTLTNKMA ALRRVYDQM EP+YVISMGSCANGGGYYHYSYSVVRGCDRIV Sbjct: 94 RQADVMIVAGTLTNKMAPALRRVYDQMAEPKYVISMGSCANGGGYYHYSYSVVRGCDRIV 153 Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRR 179 PVDIYVPGCPPTAEAL+YGIL LQ+KI R Sbjct: 154 PVDIYVPGCPPTAEALLYGILCLQQKIIR 182 >gi|121593378|ref|YP_985274.1| NADH dehydrogenase subunit B [Acidovorax sp. JS42] gi|222110087|ref|YP_002552351.1| NADH dehydrogenase subunit b [Acidovorax ebreus TPSY] gi|218527972|sp|A1W4M3|NUOB_ACISJ RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|238065124|sp|B9MEL5|NUOB_DIAST RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|120605458|gb|ABM41198.1| NADH dehydrogenase subunit B [Acidovorax sp. JS42] gi|221729531|gb|ACM32351.1| NADH-quinone oxidoreductase, B subunit [Acidovorax ebreus TPSY] Length = 159 Score = 233 bits (595), Expect = 8e-60, Method: Composition-based stats. Identities = 116/152 (76%), Positives = 129/152 (84%), Gaps = 1/152 (0%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPR 91 + +GF+ TS D +V WA+TGSL MTFGLACCAVEMM A+ RYDL RFG RASPR Sbjct: 5 VMKEGFITTSYDSVVNWAKTGSLWPMTFGLACCAVEMMHAAAARYDLGRFGAEVFRASPR 64 Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151 QSD+MIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVP Sbjct: 65 QSDLMIVAGTLCNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVP 124 Query: 152 VDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 VD+YVPGCPPTAEALIYGI+ LQ+KIRR + Sbjct: 125 VDVYVPGCPPTAEALIYGIIQLQQKIRRTHTI 156 >gi|196249749|ref|ZP_03148445.1| NADH-quinone oxidoreductase, B subunit [Geobacillus sp. G11MC16] gi|196210625|gb|EDY05388.1| NADH-quinone oxidoreductase, B subunit [Geobacillus sp. G11MC16] Length = 170 Score = 233 bits (595), Expect = 9e-60, Method: Composition-based stats. Identities = 92/147 (62%), Positives = 112/147 (76%) Query: 32 EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPR 91 E + T+++QL WAR+ SL +TFGLACCA+EMM YDL+RFG RASPR Sbjct: 14 EEVKRNVFFTTLEQLKGWARSNSLWPLTFGLACCAIEMMAVGGAHYDLDRFGSFFRASPR 73 Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151 QSDVMIV+GT+T KMA LRR+YDQMPEP++VI+MGSCA GG Y SYSVV+G D+IVP Sbjct: 74 QSDVMIVSGTVTKKMAPLLRRLYDQMPEPKWVIAMGSCATAGGPYVKSYSVVKGVDQIVP 133 Query: 152 VDIYVPGCPPTAEALIYGILLLQKKIR 178 VD+Y+PGCPP ALIYGI L++KIR Sbjct: 134 VDVYIPGCPPNPAALIYGIHKLKEKIR 160 >gi|242765656|ref|XP_002341019.1| NADH-ubiquinone oxidoreductase subunit B, putative [Talaromyces stipitatus ATCC 10500] gi|218724215|gb|EED23632.1| NADH-ubiquinone oxidoreductase subunit B, putative [Talaromyces stipitatus ATCC 10500] Length = 247 Score = 233 bits (594), Expect = 9e-60, Method: Composition-based stats. Identities = 117/207 (56%), Positives = 136/207 (65%), Gaps = 23/207 (11%) Query: 1 MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWM 58 M + + ++ S + KV + S E + +T++DQ+ WAR SL M Sbjct: 36 MPASAIERQSEPSSSLTASGKVRREVPLPSQEKKEGAMQYALTTLDQIANWARQSSLWPM 95 Query: 59 TFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMP 118 TFGLACCAVEMM S PRYD +R G RASPRQSDVMIVAGTLTNKMA ALR+VYDQMP Sbjct: 96 TFGLACCAVEMMHLSTPRYDQDRLGIIFRASPRQSDVMIVAGTLTNKMAPALRQVYDQMP 155 Query: 119 EPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGC------------------- 159 +PR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGC Sbjct: 156 DPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCKFDILLMLKLSLILIERHL 215 Query: 160 --PPTAEALIYGILLLQKKIRRVGNVK 184 PPT+EAL+YGI LQKK+R + Sbjct: 216 KGPPTSEALMYGIFQLQKKMRHTKITR 242 >gi|291613539|ref|YP_003523696.1| NADH-quinone oxidoreductase, B subunit [Sideroxydans lithotrophicus ES-1] gi|291583651|gb|ADE11309.1| NADH-quinone oxidoreductase, B subunit [Sideroxydans lithotrophicus ES-1] Length = 159 Score = 233 bits (594), Expect = 9e-60, Method: Composition-based stats. Identities = 116/152 (76%), Positives = 130/152 (85%), Gaps = 1/152 (0%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APRASPR 91 + KGF+ TS D ++ + RTGSL MTFGLACCAVEMM A++PRYDL+RFG A R SPR Sbjct: 6 VLEKGFITTSADTVINYVRTGSLWPMTFGLACCAVEMMHAALPRYDLDRFGAGAFRPSPR 65 Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151 QSDVMIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVP Sbjct: 66 QSDVMIVAGTLCNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVP 125 Query: 152 VDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 VDIYVPGCPPTAEAL+YGI+ LQ KI+R + Sbjct: 126 VDIYVPGCPPTAEALLYGIIQLQNKIKRTNTI 157 >gi|256088165|ref|XP_002580226.1| NADH-plastoquinone oxidoreductase [Schistosoma mansoni] gi|238665746|emb|CAZ36465.1| NADH-plastoquinone oxidoreductase, putative [Schistosoma mansoni] Length = 207 Score = 233 bits (594), Expect = 9e-60, Method: Composition-based stats. Identities = 102/180 (56%), Positives = 130/180 (72%), Gaps = 3/180 (1%) Query: 5 TVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLAC 64 + K + F + +I +++T +D L WAR S+ +TFGLAC Sbjct: 26 PSQPSKVDSSDESIPFKPYSPFPKPQGKID---YVITRLDDLADWARKNSIYPLTFGLAC 82 Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 CAVEMM + PRYD++R+G RASPRQ+D++IV+GT+TNKMA AL R+Y QM +P++VI Sbjct: 83 CAVEMMHIAGPRYDMDRYGVVFRASPRQADLLIVSGTVTNKMAPALHRIYSQMTQPKWVI 142 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 SMGSCANGGGYYHYSYSVVRGCDRI+PVDIYVPGCPP+AEAL+Y IL LQKKI+ + K Sbjct: 143 SMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPSAEALMYSILQLQKKIKSEKHFK 202 >gi|91083385|ref|XP_967426.1| PREDICTED: similar to NADH-ubiquinone oxidoreductase, partial [Tribolium castaneum] Length = 227 Score = 233 bits (594), Expect = 1e-59, Method: Composition-based stats. Identities = 104/167 (62%), Positives = 133/167 (79%), Gaps = 4/167 (2%) Query: 11 ISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMM 70 I +S+C + + F + +++ +D L+ W R S+ +TFGLACCA+EMM Sbjct: 20 IRCESTCPERRPYSPFRPKNQT----EWVLARLDDLLNWGRKTSMWPLTFGLACCAIEMM 75 Query: 71 QASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCA 130 + PRYD++R+G RASPRQ++V+IVAGT+TNKMA++LR+VYDQMPEPR+VISMGSCA Sbjct: 76 HIAAPRYDMDRYGVVFRASPRQTEVIIVAGTVTNKMAASLRKVYDQMPEPRWVISMGSCA 135 Query: 131 NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 NGGGYYHYSYSVVRGC+RI+PVDIYVPGCPPTAEAL+YGIL LQKK+ Sbjct: 136 NGGGYYHYSYSVVRGCNRIIPVDIYVPGCPPTAEALMYGILQLQKKV 182 >gi|160900611|ref|YP_001566193.1| NADH dehydrogenase subunit B [Delftia acidovorans SPH-1] gi|218527988|sp|A9BNB3|NUOB_DELAS RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|160366195|gb|ABX37808.1| NADH-quinone oxidoreductase, B subunit [Delftia acidovorans SPH-1] Length = 159 Score = 233 bits (594), Expect = 1e-59, Method: Composition-based stats. Identities = 114/152 (75%), Positives = 129/152 (84%), Gaps = 1/152 (0%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPR 91 + +GF+ TS D +V WA+TGSL MTFGLACCAVEMM A+ RYD+ RFG RASPR Sbjct: 5 VMKEGFITTSYDSVVNWAKTGSLWPMTFGLACCAVEMMHAAAARYDIGRFGSEVFRASPR 64 Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151 QSD+MIVAGTL NKMA A+R+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVP Sbjct: 65 QSDLMIVAGTLCNKMAPAMRKVYDQMSEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVP 124 Query: 152 VDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 VD+YVPGCPPTAEALIYGI+ LQ+KIRR + Sbjct: 125 VDVYVPGCPPTAEALIYGIIQLQQKIRRTHTI 156 >gi|322421849|ref|YP_004201072.1| NADH-quinone oxidoreductase subunit B [Geobacter sp. M18] gi|320128236|gb|ADW15796.1| NADH-quinone oxidoreductase, B subunit [Geobacter sp. M18] Length = 170 Score = 233 bits (594), Expect = 1e-59, Method: Composition-based stats. Identities = 80/152 (52%), Positives = 110/152 (72%), Gaps = 1/152 (0%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP 90 ++ + TS+D LV WAR S+ MTFGLACCA+EMM ++DL+RFG RASP Sbjct: 4 NQPLGDNIITTSLDSLVNWARKSSIWPMTFGLACCAIEMMATGAAKHDLDRFGIIFRASP 63 Query: 91 RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150 RQSD +I+AGT+T KM ++ VY+QMPEP++V++MG+CA GG + +YSVV+G D + Sbjct: 64 RQSDCIIIAGTVTQKMLPVIKTVYEQMPEPKWVVAMGACACSGGVF-DTYSVVQGIDEAL 122 Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182 PVD+Y+PGCPP EAL+YG++ LQ KI + N Sbjct: 123 PVDVYIPGCPPRPEALLYGLMKLQDKISKEKN 154 >gi|120609951|ref|YP_969629.1| NADH dehydrogenase subunit B [Acidovorax citrulli AAC00-1] gi|326316100|ref|YP_004233772.1| NAD(P)H-quinone oxidoreductase subunit K [Acidovorax avenae subsp. avenae ATCC 19860] gi|218527970|sp|A1TLL7|NUOB_ACIAC RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|120588415|gb|ABM31855.1| NADH dehydrogenase subunit B [Acidovorax citrulli AAC00-1] gi|323372936|gb|ADX45205.1| NAD(P)H-quinone oxidoreductase subunit K [Acidovorax avenae subsp. avenae ATCC 19860] Length = 159 Score = 233 bits (594), Expect = 1e-59, Method: Composition-based stats. Identities = 115/152 (75%), Positives = 129/152 (84%), Gaps = 1/152 (0%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPR 91 + +GF+ TS D +V WA+TGSL MTFGLACCAVEMM A+ RYD+ RFG RASPR Sbjct: 5 VMKEGFITTSYDSVVNWAKTGSLWPMTFGLACCAVEMMHAAAARYDIGRFGAEVFRASPR 64 Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151 QSD+MIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVP Sbjct: 65 QSDLMIVAGTLCNKMAPALRKVYDQMSEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVP 124 Query: 152 VDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 VD+YVPGCPPTAEALIYGI+ LQ+KIRR + Sbjct: 125 VDVYVPGCPPTAEALIYGIIQLQQKIRRTHTI 156 >gi|239828582|ref|YP_002951206.1| NADH dehydrogenase subunit B [Geobacillus sp. WCH70] gi|259514668|sp|C5D987|NUOB_GEOSW RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|239808875|gb|ACS25940.1| NADH-quinone oxidoreductase, B subunit [Geobacillus sp. WCH70] Length = 170 Score = 232 bits (593), Expect = 1e-59, Method: Composition-based stats. Identities = 92/154 (59%), Positives = 114/154 (74%) Query: 25 DFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF 84 D +E + T+++QL WAR+ SL +TFGLACCA+EMM YDL+RFG Sbjct: 7 DVPEGDTEELKRNVFFTTLEQLKAWARSNSLWPLTFGLACCAIEMMGVGGAHYDLDRFGS 66 Query: 85 APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR 144 RASPRQSDVMIV+GT+T KMA +RR+YDQMPEP++VI+MGSCA GG Y SYSVV+ Sbjct: 67 FFRASPRQSDVMIVSGTVTKKMAPIIRRLYDQMPEPKWVIAMGSCATAGGPYVKSYSVVK 126 Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 G D+IVPVD+Y+PGCPP ALIYGI L++KIR Sbjct: 127 GVDQIVPVDVYIPGCPPNPAALIYGINKLKEKIR 160 >gi|253702594|ref|YP_003023783.1| NADH-quinone oxidoreductase, B subunit [Geobacter sp. M21] gi|259514665|sp|C6E8N4|NUOB_GEOSM RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|251777444|gb|ACT20025.1| NADH-quinone oxidoreductase, B subunit [Geobacter sp. M21] Length = 170 Score = 232 bits (593), Expect = 1e-59, Method: Composition-based stats. Identities = 79/152 (51%), Positives = 109/152 (71%), Gaps = 1/152 (0%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP 90 + + + TS+D LV WAR S+ MTFGLACCA+EMM ++DL+RFG RASP Sbjct: 4 DQPLGENIITTSLDSLVNWARKSSIWPMTFGLACCAIEMMATGAAKHDLDRFGIIFRASP 63 Query: 91 RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150 RQ+D +I+AGT+T KM ++ VY+QMPEP++V++MG+CA GG + +YSVV+G D + Sbjct: 64 RQADCIIIAGTVTKKMLPVIKTVYEQMPEPKWVVAMGACACSGGVF-DTYSVVQGIDEAL 122 Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182 PVD+Y+PGCPP EAL+YG++ LQ KI N Sbjct: 123 PVDVYIPGCPPRPEALLYGLMKLQDKIANERN 154 >gi|6689660|emb|CAB65525.1| subunit NUKM of protein NADH:Ubiquinone Oxidoreductase (Complex I) [Yarrowia lipolytica] Length = 210 Score = 232 bits (593), Expect = 1e-59, Method: Composition-based stats. Identities = 109/175 (62%), Positives = 131/175 (74%), Gaps = 2/175 (1%) Query: 12 SGQSSCSLEKVDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVEM 69 +G S + DF S + + + +T++D + WAR GS +TFGLACCAVEM Sbjct: 31 AGTPRVSSSSMPTDFPLPSQQKPNSAVDYTLTTLDAVANWARQGSFWPVTFGLACCAVEM 90 Query: 70 MQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSC 129 M S PRYD +R G RASPRQSD+MIVAGTLTNKMA LR+VYDQMPEPR+VISMGSC Sbjct: 91 MHVSAPRYDQDRLGIIFRASPRQSDIMIVAGTLTNKMAPVLRQVYDQMPEPRWVISMGSC 150 Query: 130 ANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 ANGGGYYH+SYSVVRGCDRIVPVD+YVPGCPPT+EAL+YG+ LQ+K+R + Sbjct: 151 ANGGGYYHFSYSVVRGCDRIVPVDVYVPGCPPTSEALMYGVFQLQRKMRNTKITR 205 >gi|56416679|ref|YP_153753.1| NADH dehydrogenase subunit B [Anaplasma marginale str. St. Maries] gi|269958902|ref|YP_003328691.1| NADH dehydrogenase subunit B [Anaplasma centrale str. Israel] gi|81359162|sp|Q5PB32|NUOB_ANAMM RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|56387911|gb|AAV86498.1| NADH dehydrogenase I chain B [Anaplasma marginale str. St. Maries] gi|269848733|gb|ACZ49377.1| NADH dehydrogenase subunit B [Anaplasma centrale str. Israel] Length = 175 Score = 232 bits (593), Expect = 1e-59, Method: Composition-based stats. Identities = 116/149 (77%), Positives = 128/149 (85%), Gaps = 4/149 (2%) Query: 35 HKGFLVTS----VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP 90 +GF+VT VD +V W+R+GSL MTFGLACCAVEMM + RYDL+R+G RASP Sbjct: 19 DRGFVVTKFSDLVDSVVRWSRSGSLWPMTFGLACCAVEMMHTAASRYDLDRYGVMFRASP 78 Query: 91 RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150 RQ+DVMIVAGTLTNKMA ALRRVYDQM EP+YVISMGSCANGGGYYHYSYSVVRGCDRIV Sbjct: 79 RQADVMIVAGTLTNKMAPALRRVYDQMAEPKYVISMGSCANGGGYYHYSYSVVRGCDRIV 138 Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRR 179 PVDIYVPGCPPTAEAL+YGIL LQ+KI R Sbjct: 139 PVDIYVPGCPPTAEALLYGILCLQQKIIR 167 >gi|88607775|ref|YP_505115.1| NADH dehydrogenase subunit B [Anaplasma phagocytophilum HZ] gi|123495312|sp|Q2GKI6|NUOB_ANAPZ RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|88598838|gb|ABD44308.1| NADH dehydrogenase I, B subunit [Anaplasma phagocytophilum HZ] Length = 174 Score = 232 bits (593), Expect = 1e-59, Method: Composition-based stats. Identities = 112/151 (74%), Positives = 130/151 (86%), Gaps = 4/151 (2%) Query: 35 HKGFLVTS----VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP 90 +GF+VT +++++ WAR+GSL MTFGLACCAVEMM + RYDL+R+G RASP Sbjct: 18 DQGFVVTQFSDLIERVLKWARSGSLWPMTFGLACCAVEMMHTAASRYDLDRYGIMFRASP 77 Query: 91 RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150 RQ+DVMIVAGTLTNKMA ALRRVYDQM +P+YVISMGSCANGGGYYHYSYSVVRGCDR+V Sbjct: 78 RQADVMIVAGTLTNKMAPALRRVYDQMADPKYVISMGSCANGGGYYHYSYSVVRGCDRVV 137 Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181 PVDIYVPGCPPTAEAL+YG+L LQ+KI R G Sbjct: 138 PVDIYVPGCPPTAEALLYGLLCLQQKILRNG 168 >gi|319761763|ref|YP_004125700.1| NADH-quinone oxidoreductase, b subunit [Alicycliphilus denitrificans BC] gi|330826543|ref|YP_004389846.1| NADH-quinone oxidoreductase subunit B [Alicycliphilus denitrificans K601] gi|317116324|gb|ADU98812.1| NADH-quinone oxidoreductase, B subunit [Alicycliphilus denitrificans BC] gi|329311915|gb|AEB86330.1| NADH-quinone oxidoreductase, B subunit [Alicycliphilus denitrificans K601] Length = 159 Score = 232 bits (592), Expect = 2e-59, Method: Composition-based stats. Identities = 114/152 (75%), Positives = 129/152 (84%), Gaps = 1/152 (0%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPR 91 + +GF+ TS D +V WA+TGSL +TFGLACCAVEMM A+ RYDL RFG RASPR Sbjct: 5 VMKEGFVTTSYDAVVNWAKTGSLWPVTFGLACCAVEMMHAAAARYDLARFGAEVFRASPR 64 Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151 QSD+MIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDR+VP Sbjct: 65 QSDLMIVAGTLCNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRVVP 124 Query: 152 VDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 VD+YVPGCPPTAEALIYGI+ LQ+KIRR + Sbjct: 125 VDVYVPGCPPTAEALIYGIIQLQQKIRRTHTI 156 >gi|152977486|ref|YP_001377003.1| NADH dehydrogenase subunit B [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|238065062|sp|A7GV50|NUOB_BACCN RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|152026238|gb|ABS24008.1| NADH-quinone oxidoreductase, B subunit [Bacillus cytotoxicus NVH 391-98] Length = 172 Score = 232 bits (592), Expect = 2e-59, Method: Composition-based stats. Identities = 88/154 (57%), Positives = 111/154 (72%) Query: 25 DFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF 84 + + T+++Q+ WAR+ SL MTFGLACCA+EMM YDL+RFG Sbjct: 7 ELHPQEQAELERNIFFTTLEQIKGWARSNSLWPMTFGLACCAIEMMGVGSSHYDLDRFGS 66 Query: 85 APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR 144 R SPRQSDVMIV+GT+T KMA +RR+YDQMPEP++VI+MGSCA GG Y SY+VV+ Sbjct: 67 FFRTSPRQSDVMIVSGTVTKKMAPIVRRLYDQMPEPKWVIAMGSCATAGGPYVNSYAVVK 126 Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 G D+IVPVD+Y+PGCPP ALIYGI L++KIR Sbjct: 127 GVDQIVPVDVYIPGCPPNPAALIYGINKLKEKIR 160 >gi|330794647|ref|XP_003285389.1| NADH dehydrogenase [Dictyostelium purpureum] gi|325084659|gb|EGC38082.1| NADH dehydrogenase [Dictyostelium purpureum] Length = 178 Score = 231 bits (590), Expect = 3e-59, Method: Composition-based stats. Identities = 115/168 (68%), Positives = 133/168 (79%) Query: 16 SCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMP 75 L K+ A + + +++ +D LV WARTGSL MTFGLACCAVEMMQ Sbjct: 5 GQHLSKLLASSFKAAPPNGMPEVVISKLDGLVNWARTGSLWPMTFGLACCAVEMMQGYAA 64 Query: 76 RYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY 135 RYD++RFG PRASPRQSD +IVAGTLTNKMA ALR+VYDQMP PRYV+SMGSCANGGGY Sbjct: 65 RYDMDRFGVIPRASPRQSDCIIVAGTLTNKMAPALRKVYDQMPNPRYVVSMGSCANGGGY 124 Query: 136 YHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 YHYSYSVVRGCDRI+PVD+Y+PGCPPTAEA +YGIL LQKK+RR N+ Sbjct: 125 YHYSYSVVRGCDRIIPVDVYMPGCPPTAEAFVYGILQLQKKMRREQNL 172 >gi|303237657|ref|ZP_07324217.1| putative NADH dehydrogenase subunit B [Prevotella disiens FB035-09AN] gi|302482109|gb|EFL45144.1| putative NADH dehydrogenase subunit B [Prevotella disiens FB035-09AN] Length = 288 Score = 231 bits (590), Expect = 3e-59, Method: Composition-based stats. Identities = 77/161 (47%), Positives = 114/161 (70%), Gaps = 3/161 (1%) Query: 21 KVDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78 K + ++++++ G ++ ++DQL+ W R+ SL +TF +CC +E M RYD Sbjct: 17 KDNDTLEQMANDLNDGGTNLVLGNLDQLINWGRSNSLWSLTFATSCCGIEFMAVGCARYD 76 Query: 79 LERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137 RFGF R SPRQ+D+++ AGT+TNKMA AL+R+YDQM EP+YVI++G CA GG + Sbjct: 77 FSRFGFEVTRNSPRQADLIMCAGTITNKMAPALKRLYDQMAEPKYVIAVGGCAISGGPFK 136 Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 SY V+RG D I+PVD+Y+PGCPP EA+IYG++ LQ+K++ Sbjct: 137 DSYHVMRGIDEIIPVDVYIPGCPPRPEAIIYGMMQLQRKVK 177 >gi|254571403|ref|XP_002492811.1| hypothetical protein [Pichia pastoris GS115] gi|238032609|emb|CAY70632.1| Hypothetical protein PAS_chr3_0585 [Pichia pastoris GS115] gi|308152254|emb|CBI83546.1| NUKM (PSST) subunit of mitochondrial NADH:ubiquinone oxidoreductase (complex I) [Pichia pastoris] Length = 204 Score = 231 bits (590), Expect = 3e-59, Method: Composition-based stats. Identities = 107/176 (60%), Positives = 126/176 (71%) Query: 2 GLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFG 61 + ++++ + S S D + T+ D++ WAR S MTFG Sbjct: 16 SVRYASKQVATSHSYSSDLPTDIPVLSKRPHTNLLDYTFTTFDKMKNWARKSSFWPMTFG 75 Query: 62 LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPR 121 LACCAVEMM S PRYD +R G RASPRQSD+MIVAGT+TNKMA ALR+VYDQMP PR Sbjct: 76 LACCAVEMMHVSAPRYDQDRLGIIFRASPRQSDIMIVAGTVTNKMAPALRQVYDQMPYPR 135 Query: 122 YVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 +VISMGSCANGGGYYHYSYSVVRG DRIVPVDIYVPGCPPT+EAL+YG+ LQKK+ Sbjct: 136 WVISMGSCANGGGYYHYSYSVVRGVDRIVPVDIYVPGCPPTSEALMYGVFQLQKKM 191 >gi|268566427|ref|XP_002639719.1| Hypothetical protein CBG12445 [Caenorhabditis briggsae] gi|300681044|sp|A8XFG2|NDUS7_CAEBR RecName: Full=Probable NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial; Flags: Precursor gi|187029568|emb|CAP31423.1| CBR-NDUF-7 protein [Caenorhabditis briggsae AF16] Length = 199 Score = 231 bits (590), Expect = 3e-59, Method: Composition-based stats. Identities = 97/151 (64%), Positives = 125/151 (82%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93 + + + +D ++ A+ GS+ +TFGLACCAVEMM + PRYD++R+G RASPRQ+ Sbjct: 44 SKAEYALARLDDVMNLAQRGSIWPLTFGLACCAVEMMHFAAPRYDMDRYGVVFRASPRQA 103 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD 153 D++ VAGT+TNKMA ALRR+YDQMPE ++VISMGSCANGGGYYHY+YSV+RGCDR++PVD Sbjct: 104 DLIFVAGTVTNKMAPALRRIYDQMPEAKWVISMGSCANGGGYYHYAYSVLRGCDRVIPVD 163 Query: 154 IYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 IYVPGCPPTAEAL+YG+L LQKKI+R + Sbjct: 164 IYVPGCPPTAEALLYGVLQLQKKIKRKREAQ 194 >gi|17509685|ref|NP_492445.1| NADH Ubiquinone oxidoreductase Fe-S protein family member (nduf-7) [Caenorhabditis elegans] gi|3024249|sp|Q94360|NDUS7_CAEEL RecName: Full=Probable NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial; AltName: Full=Complex I-20kD; Short=CI-20kD; AltName: Full=NADH-ubiquinone oxidoreductase 20 kDa subunit; Flags: Precursor gi|3880584|emb|CAB02132.1| C. elegans protein W10D5.2, confirmed by transcript evidence [Caenorhabditis elegans] Length = 199 Score = 231 bits (590), Expect = 3e-59, Method: Composition-based stats. Identities = 97/151 (64%), Positives = 125/151 (82%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93 + + + +D ++ A+ GS+ +TFGLACCAVEMM + PRYD++R+G RASPRQ+ Sbjct: 44 SKAEYALARLDDVLNLAQRGSIWPLTFGLACCAVEMMHFAAPRYDMDRYGVVFRASPRQA 103 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD 153 D++ VAGT+TNKMA ALRR+YDQMPE ++VISMGSCANGGGYYHY+YSV+RGCDR++PVD Sbjct: 104 DLIFVAGTVTNKMAPALRRIYDQMPEAKWVISMGSCANGGGYYHYAYSVLRGCDRVIPVD 163 Query: 154 IYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 IYVPGCPPTAEAL+YG+L LQKKI+R + Sbjct: 164 IYVPGCPPTAEALLYGVLQLQKKIKRKREAQ 194 >gi|304407748|ref|ZP_07389399.1| NADH-quinone oxidoreductase, B subunit [Paenibacillus curdlanolyticus YK9] gi|304343231|gb|EFM09074.1| NADH-quinone oxidoreductase, B subunit [Paenibacillus curdlanolyticus YK9] Length = 170 Score = 231 bits (590), Expect = 3e-59, Method: Composition-based stats. Identities = 86/145 (59%), Positives = 110/145 (75%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93 + + +++Q+ WAR+ SL +TFGLACCA+EMM YDL+RFG R SPRQ+ Sbjct: 16 LERNVFLGTLEQVKAWARSNSLWPLTFGLACCAIEMMGTGASHYDLDRFGVMFRTSPRQA 75 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD 153 DVMIVAGT+T KM LRR+YDQMPEP++VI+MGSCA GG Y SY+V++G D+IVPVD Sbjct: 76 DVMIVAGTVTKKMGPLLRRLYDQMPEPKWVIAMGSCATAGGPYVKSYAVIKGVDQIVPVD 135 Query: 154 IYVPGCPPTAEALIYGILLLQKKIR 178 +Y+PGCPP+ ALIYGI LQ+KIR Sbjct: 136 VYIPGCPPSPAALIYGINKLQEKIR 160 >gi|327398400|ref|YP_004339269.1| NAD(P)H-quinone oxidoreductase subunit K [Hippea maritima DSM 10411] gi|327181029|gb|AEA33210.1| NAD(P)H-quinone oxidoreductase subunit K [Hippea maritima DSM 10411] Length = 153 Score = 231 bits (590), Expect = 3e-59, Method: Composition-based stats. Identities = 94/151 (62%), Positives = 117/151 (77%), Gaps = 1/151 (0%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93 ++ T +D+LV+WAR SL MTFGLACCA+EMM R+DL+RFG RASPR S Sbjct: 3 VENPWITTKLDKLVSWARYSSLWPMTFGLACCAIEMMATGASRFDLDRFGVVFRASPRHS 62 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD 153 D+MI+AGTLT KMA A R+VYDQMP P++VISMGSCAN GG + +YSVV+G D I+PVD Sbjct: 63 DIMIIAGTLTKKMAIAARKVYDQMPHPKWVISMGSCANTGGMF-DTYSVVQGVDTIMPVD 121 Query: 154 IYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 +YVPGCPP E L+YGI+ LQ+KIRR G++K Sbjct: 122 VYVPGCPPRPEGLLYGIMKLQEKIRREGSMK 152 >gi|295400695|ref|ZP_06810672.1| NADH-quinone oxidoreductase, B subunit [Geobacillus thermoglucosidasius C56-YS93] gi|312112611|ref|YP_003990927.1| NADH-quinone oxidoreductase subunit beta [Geobacillus sp. Y4.1MC1] gi|294977276|gb|EFG52877.1| NADH-quinone oxidoreductase, B subunit [Geobacillus thermoglucosidasius C56-YS93] gi|311217712|gb|ADP76316.1| NADH-quinone oxidoreductase, B subunit [Geobacillus sp. Y4.1MC1] Length = 170 Score = 231 bits (590), Expect = 3e-59, Method: Composition-based stats. Identities = 93/154 (60%), Positives = 114/154 (74%) Query: 25 DFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF 84 D E + +T+++QL WAR+ SL +TFGLACCA+EMM YDL+RFG Sbjct: 7 DVPEGEMEEIKRNVFLTTLEQLKAWARSNSLWPLTFGLACCAIEMMGVGGSHYDLDRFGS 66 Query: 85 APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR 144 RASPRQSDVMIV+GT+T KMA LRR+YDQMPEP++VI+MGSCA GG Y SYSVV+ Sbjct: 67 FFRASPRQSDVMIVSGTVTKKMAPLLRRLYDQMPEPKWVIAMGSCATAGGPYVKSYSVVK 126 Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 G D+IVPVD+Y+PGCPP ALIYGI L++KIR Sbjct: 127 GVDQIVPVDVYIPGCPPNPAALIYGINKLKEKIR 160 >gi|221068611|ref|ZP_03544716.1| NADH-quinone oxidoreductase, B subunit [Comamonas testosteroni KF-1] gi|264677199|ref|YP_003277105.1| NADH-quinone oxidoreductase, B subunit [Comamonas testosteroni CNB-2] gi|299530743|ref|ZP_07044158.1| NADH dehydrogenase subunit B [Comamonas testosteroni S44] gi|220713634|gb|EED69002.1| NADH-quinone oxidoreductase, B subunit [Comamonas testosteroni KF-1] gi|262207711|gb|ACY31809.1| NADH-quinone oxidoreductase, B subunit [Comamonas testosteroni CNB-2] gi|298721259|gb|EFI62201.1| NADH dehydrogenase subunit B [Comamonas testosteroni S44] Length = 159 Score = 231 bits (590), Expect = 3e-59, Method: Composition-based stats. Identities = 112/152 (73%), Positives = 128/152 (84%), Gaps = 1/152 (0%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPR 91 + +GF+ TS D +V WA+TGS+ MTFGLACCAVEMM A+ RYD+ RFG RASPR Sbjct: 5 VMKEGFVTTSYDTVVNWAKTGSIWPMTFGLACCAVEMMHAAAARYDIGRFGSEVFRASPR 64 Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151 SD+MIVAGTL NKMA A+R+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVP Sbjct: 65 HSDLMIVAGTLCNKMAPAMRKVYDQMSEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVP 124 Query: 152 VDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 VD+YVPGCPPTAEALIYGI+ LQ+KIRR + Sbjct: 125 VDVYVPGCPPTAEALIYGIIQLQQKIRRTHTI 156 >gi|291280356|ref|YP_003497191.1| NADH-quinone oxidoreductase subunit B [Deferribacter desulfuricans SSM1] gi|290755058|dbj|BAI81435.1| NADH-quinone oxidoreductase, B subunit [Deferribacter desulfuricans SSM1] Length = 158 Score = 231 bits (589), Expect = 3e-59, Method: Composition-based stats. Identities = 80/150 (53%), Positives = 110/150 (73%), Gaps = 1/150 (0%) Query: 35 HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSD 94 + ++D ++ WAR S+ +TFGLACCA+EMM A +YDL+R G RA+PRQ+D Sbjct: 9 SDNIITATIDGVINWARKSSIWPVTFGLACCAIEMMAAGASKYDLDRLGVIFRATPRQAD 68 Query: 95 VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154 +MIVAGT+T KMA +R+VYDQMPEP++VI+MGSCA GG ++ +YS V+G D IVPVD Sbjct: 69 LMIVAGTVTRKMAPVVRKVYDQMPEPKWVIAMGSCATSGGIFN-TYSTVQGVDEIVPVDF 127 Query: 155 YVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 Y+PGCPP EAL+ I+ LQ+KI+ ++ Sbjct: 128 YIPGCPPRPEALLDAIVALQEKIKHDKILR 157 >gi|308500063|ref|XP_003112217.1| CRE-NDUF-7 protein [Caenorhabditis remanei] gi|308268698|gb|EFP12651.1| CRE-NDUF-7 protein [Caenorhabditis remanei] Length = 199 Score = 231 bits (589), Expect = 3e-59, Method: Composition-based stats. Identities = 97/151 (64%), Positives = 125/151 (82%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93 + + + +D ++ A+ GS+ +TFGLACCAVEMM + PRYD++R+G RASPRQ+ Sbjct: 44 SKAEYALARLDDVMNLAQRGSIWPLTFGLACCAVEMMHFAAPRYDMDRYGVVFRASPRQA 103 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD 153 D++ VAGT+TNKMA ALRR+YDQMPE ++VISMGSCANGGGYYHY+YSV+RGCDR++PVD Sbjct: 104 DLIFVAGTVTNKMAPALRRIYDQMPEAKWVISMGSCANGGGYYHYAYSVLRGCDRVIPVD 163 Query: 154 IYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 IYVPGCPPTAEAL+YG+L LQKKI+R + Sbjct: 164 IYVPGCPPTAEALLYGVLQLQKKIKRKREAQ 194 >gi|320580734|gb|EFW94956.1| NADH-ubiquinone oxidoreductase subunit [Pichia angusta DL-1] Length = 193 Score = 231 bits (589), Expect = 4e-59, Method: Composition-based stats. Identities = 107/140 (76%), Positives = 116/140 (82%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 + TS D+L WAR S TFGLACCAVEMM S PRYD +R G RASPRQSDVMI Sbjct: 41 YAFTSFDKLKNWARKSSFWPATFGLACCAVEMMHVSAPRYDQDRLGIIFRASPRQSDVMI 100 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGT+TNKMA ALR+VYDQMP PR+VISMGSCANGGGYYHYSYSVVRG DRIVPVDIYVP Sbjct: 101 VAGTVTNKMAPALRQVYDQMPYPRWVISMGSCANGGGYYHYSYSVVRGVDRIVPVDIYVP 160 Query: 158 GCPPTAEALIYGILLLQKKI 177 GCPP++EAL+YGI LQKKI Sbjct: 161 GCPPSSEALMYGIFRLQKKI 180 >gi|29654738|ref|NP_820430.1| NADH dehydrogenase subunit B [Coxiella burnetii RSA 493] gi|153207226|ref|ZP_01945990.1| NADH dehydrogenase (ubiquinone), B subunit [Coxiella burnetii 'MSU Goat Q177'] gi|154706106|ref|YP_001423957.1| NADH dehydrogenase subunit B [Coxiella burnetii Dugway 5J108-111] gi|161830495|ref|YP_001597292.1| NADH dehydrogenase subunit B [Coxiella burnetii RSA 331] gi|165918784|ref|ZP_02218870.1| NADH dehydrogenase (ubiquinone), B subunit [Coxiella burnetii RSA 334] gi|212212183|ref|YP_002303119.1| NADH dehydrogenase subunit B [Coxiella burnetii CbuG_Q212] gi|212218213|ref|YP_002305000.1| NADH dehydrogenase subunit B [Coxiella burnetii CbuK_Q154] gi|81628735|sp|Q83BQ6|NUOB_COXBU RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|218527985|sp|A9KBK5|NUOB_COXBN RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|218527986|sp|A9N8X2|NUOB_COXBR RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|238055289|sp|B6J695|NUOB_COXB1 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|238055290|sp|B6IZ46|NUOB_COXB2 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|29542006|gb|AAO90944.1| NADH-quinone oxidoreductase chain B [Coxiella burnetii RSA 493] gi|120576714|gb|EAX33338.1| NADH dehydrogenase (ubiquinone), B subunit [Coxiella burnetii 'MSU Goat Q177'] gi|154355392|gb|ABS76854.1| NADH-quinone oxidoreductase chain B [Coxiella burnetii Dugway 5J108-111] gi|161762362|gb|ABX78004.1| NADH dehydrogenase (ubiquinone), B subunit [Coxiella burnetii RSA 331] gi|165917508|gb|EDR36112.1| NADH dehydrogenase (ubiquinone), B subunit [Coxiella burnetii RSA 334] gi|212010593|gb|ACJ17974.1| NADH-quinone oxidoreductase chain B [Coxiella burnetii CbuG_Q212] gi|212012475|gb|ACJ19855.1| NADH-quinone oxidoreductase chain B [Coxiella burnetii CbuK_Q154] Length = 161 Score = 231 bits (589), Expect = 4e-59, Method: Composition-based stats. Identities = 114/147 (77%), Positives = 128/147 (87%), Gaps = 1/147 (0%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APRASPR 91 +T +GFL+TS+D L+ WAR+GSL MTFGLACCAVEMMQ + RYDL+RFG R SPR Sbjct: 5 LTKEGFLLTSLDDLMRWARSGSLWPMTFGLACCAVEMMQCASSRYDLDRFGAGLFRPSPR 64 Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151 QSDVMIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHY+YSVVRGCDRIVP Sbjct: 65 QSDVMIVAGTLCNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYAYSVVRGCDRIVP 124 Query: 152 VDIYVPGCPPTAEALIYGILLLQKKIR 178 VD+YVPGCPPTAEAL YGI+ L+ KIR Sbjct: 125 VDVYVPGCPPTAEALFYGIMQLRNKIR 151 >gi|146421276|ref|XP_001486588.1| conserved hypothetical protein [Meyerozyma guilliermondii ATCC 6260] gi|146390003|gb|EDK38161.1| conserved hypothetical protein [Meyerozyma guilliermondii ATCC 6260] Length = 210 Score = 231 bits (589), Expect = 4e-59, Method: Composition-based stats. Identities = 106/169 (62%), Positives = 128/169 (75%), Gaps = 2/169 (1%) Query: 18 SLEKVDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMP 75 + + + D IS + +++TS+D + WAR S +TFGLACCAVEMM S P Sbjct: 37 TPKPLPTDMPLISQKTASSPVDYVLTSLDTIANWARKSSFWPVTFGLACCAVEMMHVSAP 96 Query: 76 RYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY 135 RYD +R G RASPRQSDVMIVAGT+TNKM ALR+VYDQM +PR+VISMGSCANGGGY Sbjct: 97 RYDQDRLGIIFRASPRQSDVMIVAGTVTNKMGPALRQVYDQMADPRWVISMGSCANGGGY 156 Query: 136 YHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 YHYSYSVVRGCDR++PVD+YVPGCPPTAEAL+YG+ LQKK+ R + Sbjct: 157 YHYSYSVVRGCDRLIPVDVYVPGCPPTAEALMYGVFRLQKKMMRTRITR 205 >gi|49188135|ref|YP_031388.1| NADH dehydrogenase subunit B [Bacillus anthracis str. Sterne] gi|49481270|ref|YP_039290.1| NADH dehydrogenase subunit B [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52140262|ref|YP_086568.1| NADH dehydrogenase subunit B [Bacillus cereus E33L] gi|65317275|ref|ZP_00390234.1| COG0377: NADH:ubiquinone oxidoreductase 20 kD subunit and related Fe-S oxidoreductases [Bacillus anthracis str. A2012] gi|75762936|ref|ZP_00742740.1| NADH-quinone oxidoreductase chain B [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|118480339|ref|YP_897490.1| NADH dehydrogenase subunit B [Bacillus thuringiensis str. Al Hakam] gi|81394192|sp|Q6HAY6|NUOB_BACHK RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|81685364|sp|Q630U9|NUOB_BACCZ RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|238065057|sp|A0RL90|NUOB_BACAH RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|49182062|gb|AAT57438.1| NADH dehydrogenase I, B subunit [Bacillus anthracis str. Sterne] gi|49332826|gb|AAT63472.1| NADH dehydrogenase I, subunit B (NADH-quinone oxidoreductase, chain B) [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51973731|gb|AAU15281.1| NADH dehydrogenase I, subunit B (NADH-quinone oxidoreductase, chain B) [Bacillus cereus E33L] gi|74489578|gb|EAO52990.1| NADH-quinone oxidoreductase chain B [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|118419564|gb|ABK87983.1| NADH dehydrogenase subunit B [Bacillus thuringiensis str. Al Hakam] Length = 179 Score = 231 bits (589), Expect = 4e-59, Method: Composition-based stats. Identities = 88/154 (57%), Positives = 111/154 (72%) Query: 25 DFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF 84 + + ++++QL WAR+ SL MTFGLACCA+EMM YDL+RFG Sbjct: 14 ELHPNERAELERNIFFSTLEQLKGWARSNSLWPMTFGLACCAIEMMGVGSSHYDLDRFGS 73 Query: 85 APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR 144 R SPRQSDVMIV+GT+T KMA +RR+YDQMPEP++VI+MGSCA GG Y SY+VV+ Sbjct: 74 FFRTSPRQSDVMIVSGTVTKKMAPIVRRLYDQMPEPKWVIAMGSCATAGGPYVNSYAVVK 133 Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 G D+IVPVD+Y+PGCPP ALIYGI L++KIR Sbjct: 134 GVDQIVPVDVYIPGCPPNPAALIYGINKLKEKIR 167 >gi|304382881|ref|ZP_07365364.1| NADH-quinone oxidoreductase subunit B [Prevotella marshii DSM 16973] gi|304336066|gb|EFM02313.1| NADH-quinone oxidoreductase subunit B [Prevotella marshii DSM 16973] Length = 207 Score = 231 bits (589), Expect = 4e-59, Method: Composition-based stats. Identities = 81/181 (44%), Positives = 117/181 (64%), Gaps = 7/181 (3%) Query: 1 MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWM 58 MG+ N K I + K + +I+ E+ G ++ ++D L+ W R+ SL + Sbjct: 1 MGMKKPNIKSIPYKEF----KDNESLEKIAQELHEGGTNVVLGTLDDLINWGRSNSLWSL 56 Query: 59 TFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQM 117 TF +CC +E M RYD RFGF R SPRQ+D+++ AGT+TNKMA +R+YD+M Sbjct: 57 TFATSCCGIEFMSVGCARYDFARFGFEVTRNSPRQADLIMCAGTITNKMAPVFKRLYDEM 116 Query: 118 PEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 EP+YVI++G CA GG + SY VVRG + IVPVD+Y+PGCPP EA++YG++ LQ+KI Sbjct: 117 AEPKYVIAVGGCAISGGPFKSSYHVVRGINEIVPVDVYIPGCPPRPEAILYGMMQLQRKI 176 Query: 178 R 178 + Sbjct: 177 K 177 >gi|313672278|ref|YP_004050389.1| NADH dehydrogenase subunit b [Calditerrivibrio nitroreducens DSM 19672] gi|312939034|gb|ADR18226.1| NADH dehydrogenase subunit B [Calditerrivibrio nitroreducens DSM 19672] Length = 158 Score = 230 bits (588), Expect = 4e-59, Method: Composition-based stats. Identities = 82/150 (54%), Positives = 110/150 (73%), Gaps = 1/150 (0%) Query: 35 HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSD 94 + T+VD ++ WAR SL +TFGLACCA+EMM +YDL+R G RA+PRQ+D Sbjct: 9 SDNIITTTVDGVINWARRSSLWPVTFGLACCAIEMMAVGASKYDLDRLGVIFRATPRQAD 68 Query: 95 VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154 +MIVAGT+T KMA +R+VYDQMPEP++VI+MGSCA GG ++ +YS V+G D IVPVD Sbjct: 69 LMIVAGTVTRKMAPVVRKVYDQMPEPKWVIAMGSCATSGGIFN-TYSTVQGVDEIVPVDF 127 Query: 155 YVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 Y+PGCPP EAL+ I+ LQ+KI+ ++ Sbjct: 128 YIPGCPPRPEALLDAIVALQEKIKGEKVLR 157 >gi|78224544|ref|YP_386291.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit [Geobacter metallireducens GS-15] gi|123570771|sp|Q39QA8|NUOB_GEOMG RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|78195799|gb|ABB33566.1| NADH dehydrogenase subunit B [Geobacter metallireducens GS-15] Length = 170 Score = 230 bits (588), Expect = 5e-59, Method: Composition-based stats. Identities = 79/152 (51%), Positives = 107/152 (70%), Gaps = 1/152 (0%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP 90 + F+ S+D LV WAR S+ MTFGLACCA+EMM DL+RFG RASP Sbjct: 4 DQPLGDSFITASLDGLVNWARKSSIWPMTFGLACCAIEMMATGASHNDLDRFGIIFRASP 63 Query: 91 RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150 RQ+D +I+AGT+T KM ++ VY+QMPEP++V++MG+CA GG + +YSVV+G D + Sbjct: 64 RQADCIIIAGTVTKKMLPVIQTVYEQMPEPKWVVAMGACACSGGVF-DTYSVVQGIDEAL 122 Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182 PVD+Y+PGCPP EAL+YG++ LQ KI + N Sbjct: 123 PVDVYIPGCPPRPEALLYGLIKLQDKIMKDKN 154 >gi|30023332|ref|NP_834963.1| NADH dehydrogenase subunit B [Bacillus cereus ATCC 14579] gi|30265322|ref|NP_847699.1| NADH dehydrogenase subunit B [Bacillus anthracis str. Ames] gi|42784469|ref|NP_981716.1| NADH dehydrogenase subunit B [Bacillus cereus ATCC 10987] gi|47530861|ref|YP_022210.1| NADH dehydrogenase subunit B [Bacillus anthracis str. 'Ames Ancestor'] gi|165869972|ref|ZP_02214629.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus anthracis str. A0488] gi|167636380|ref|ZP_02394680.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus anthracis str. A0442] gi|167641714|ref|ZP_02399958.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus anthracis str. A0193] gi|170689329|ref|ZP_02880523.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus anthracis str. A0465] gi|170708828|ref|ZP_02899263.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus anthracis str. A0389] gi|177654059|ref|ZP_02936069.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus anthracis str. A0174] gi|190567657|ref|ZP_03020569.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus anthracis Tsiankovskii-I] gi|196036336|ref|ZP_03103734.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus cereus W] gi|196039410|ref|ZP_03106715.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus cereus NVH0597-99] gi|196045583|ref|ZP_03112813.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus cereus 03BB108] gi|206976881|ref|ZP_03237783.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus cereus H3081.97] gi|217962788|ref|YP_002341364.1| NADH dehydrogenase subunit B [Bacillus cereus AH187] gi|218232741|ref|YP_002370074.1| NADH dehydrogenase subunit B [Bacillus cereus B4264] gi|218906476|ref|YP_002454310.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus cereus AH820] gi|222098770|ref|YP_002532828.1| NADH dehydrogenase subunit b [Bacillus cereus Q1] gi|225867276|ref|YP_002752654.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus cereus 03BB102] gi|227818062|ref|YP_002818071.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus anthracis str. CDC 684] gi|229601924|ref|YP_002869514.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus anthracis str. A0248] gi|254686278|ref|ZP_05150137.1| NADH dehydrogenase subunit B [Bacillus anthracis str. CNEVA-9066] gi|254724274|ref|ZP_05186058.1| NADH dehydrogenase subunit B [Bacillus anthracis str. A1055] gi|254735227|ref|ZP_05192936.1| NADH dehydrogenase subunit B [Bacillus anthracis str. Western North America USA6153] gi|254744431|ref|ZP_05202111.1| NADH dehydrogenase subunit B [Bacillus anthracis str. Kruger B] gi|254755735|ref|ZP_05207768.1| NADH dehydrogenase subunit B [Bacillus anthracis str. Vollum] gi|254759532|ref|ZP_05211557.1| NADH dehydrogenase subunit B [Bacillus anthracis str. Australia 94] gi|296505727|ref|YP_003667427.1| NADH dehydrogenase subunit B [Bacillus thuringiensis BMB171] gi|300117809|ref|ZP_07055576.1| NADH dehydrogenase subunit B [Bacillus cereus SJ1] gi|301056766|ref|YP_003794977.1| NADH dehydrogenase subunit beta [Bacillus anthracis CI] gi|81408415|sp|Q72XF4|NUOB_BACC1 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|81433046|sp|Q814W7|NUOB_BACCR RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|81580962|sp|Q81K01|NUOB_BACAN RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|238065058|sp|B7JGM4|NUOB_BACC0 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|238065060|sp|B7HFJ5|NUOB_BACC4 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|238065061|sp|B7HY57|NUOB_BACC7 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|238065063|sp|B9IRT1|NUOB_BACCQ RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|254767787|sp|C3P1E8|NUOB_BACAA RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|254767788|sp|C3LFH3|NUOB_BACAC RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|254767789|sp|C1F0M2|NUOB_BACC3 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|29898893|gb|AAP12164.1| NADH-quinone oxidoreductase chain B [Bacillus cereus ATCC 14579] gi|30260000|gb|AAP29185.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus anthracis str. Ames] gi|42740401|gb|AAS44324.1| NADH dehydrogenase I, B subunit [Bacillus cereus ATCC 10987] gi|47506009|gb|AAT34685.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus anthracis str. 'Ames Ancestor'] gi|164714295|gb|EDR19815.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus anthracis str. A0488] gi|167510339|gb|EDR85741.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus anthracis str. A0193] gi|167528214|gb|EDR90996.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus anthracis str. A0442] gi|170126228|gb|EDS95120.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus anthracis str. A0389] gi|170666697|gb|EDT17466.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus anthracis str. A0465] gi|172080942|gb|EDT66021.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus anthracis str. A0174] gi|190561073|gb|EDV15046.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus anthracis Tsiankovskii-I] gi|195991128|gb|EDX55098.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus cereus W] gi|196023414|gb|EDX62091.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus cereus 03BB108] gi|196029570|gb|EDX68172.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus cereus NVH0597-99] gi|206744847|gb|EDZ56252.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus cereus H3081.97] gi|217066695|gb|ACJ80945.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus cereus AH187] gi|218160698|gb|ACK60690.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus cereus B4264] gi|218535886|gb|ACK88284.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus cereus AH820] gi|221242829|gb|ACM15539.1| NADH dehydrogenase I, subunit B (NADH-quinone oxidoreductase, chain B) [Bacillus cereus Q1] gi|225791042|gb|ACO31259.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus cereus 03BB102] gi|227004083|gb|ACP13826.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus anthracis str. CDC 684] gi|229266332|gb|ACQ47969.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus anthracis str. A0248] gi|296326779|gb|ADH09707.1| NADH dehydrogenase subunit B [Bacillus thuringiensis BMB171] gi|298724673|gb|EFI65348.1| NADH dehydrogenase subunit B [Bacillus cereus SJ1] gi|300378935|gb|ADK07839.1| NADH dehydrogenase beta subunit [Bacillus cereus biovar anthracis str. CI] gi|324329247|gb|ADY24507.1| NADH dehydrogenase subunit B [Bacillus thuringiensis serovar finitimus YBT-020] gi|326943097|gb|AEA18993.1| NADH dehydrogenase subunit B [Bacillus thuringiensis serovar chinensis CT-43] Length = 172 Score = 230 bits (588), Expect = 5e-59, Method: Composition-based stats. Identities = 88/154 (57%), Positives = 111/154 (72%) Query: 25 DFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF 84 + + ++++QL WAR+ SL MTFGLACCA+EMM YDL+RFG Sbjct: 7 ELHPNERAELERNIFFSTLEQLKGWARSNSLWPMTFGLACCAIEMMGVGSSHYDLDRFGS 66 Query: 85 APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR 144 R SPRQSDVMIV+GT+T KMA +RR+YDQMPEP++VI+MGSCA GG Y SY+VV+ Sbjct: 67 FFRTSPRQSDVMIVSGTVTKKMAPIVRRLYDQMPEPKWVIAMGSCATAGGPYVNSYAVVK 126 Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 G D+IVPVD+Y+PGCPP ALIYGI L++KIR Sbjct: 127 GVDQIVPVDVYIPGCPPNPAALIYGINKLKEKIR 160 >gi|206970223|ref|ZP_03231176.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus cereus AH1134] gi|206734800|gb|EDZ51969.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus cereus AH1134] Length = 172 Score = 230 bits (588), Expect = 5e-59, Method: Composition-based stats. Identities = 87/154 (56%), Positives = 111/154 (72%) Query: 25 DFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF 84 + + ++++QL WAR+ SL MTFGLACCA+EMM YDL+RFG Sbjct: 7 ELHPNERAELERNIFFSTLEQLKGWARSNSLWPMTFGLACCAIEMMGVGSSHYDLDRFGS 66 Query: 85 APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR 144 R SPRQSDVMIV+GT+T KMA +RR+YDQMPEP++VI+MGSCA GG Y SY+VV+ Sbjct: 67 FFRTSPRQSDVMIVSGTVTKKMAPIVRRLYDQMPEPKWVIAMGSCATAGGPYVNSYAVVK 126 Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 G D+I+PVD+Y+PGCPP ALIYGI L++KIR Sbjct: 127 GVDQILPVDVYIPGCPPNPAALIYGINKLKEKIR 160 >gi|163942987|ref|YP_001647871.1| NADH dehydrogenase subunit B [Bacillus weihenstephanensis KBAB4] gi|238055233|sp|A9VS97|NUOB_BACWK RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|163865184|gb|ABY46243.1| NADH-quinone oxidoreductase, B subunit [Bacillus weihenstephanensis KBAB4] Length = 172 Score = 230 bits (588), Expect = 5e-59, Method: Composition-based stats. Identities = 88/154 (57%), Positives = 111/154 (72%) Query: 25 DFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF 84 + + ++++QL WAR+ SL MTFGLACCA+EMM YDL+RFG Sbjct: 7 ELHPQERAELERNIFFSTLEQLKGWARSNSLWPMTFGLACCAIEMMGVGSSHYDLDRFGS 66 Query: 85 APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR 144 R SPRQSDVMIV+GT+T KMA +RR+YDQMPEP++VI+MGSCA GG Y SY+VV+ Sbjct: 67 FFRTSPRQSDVMIVSGTVTKKMAPIVRRLYDQMPEPKWVIAMGSCATAGGPYVNSYAVVK 126 Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 G D+IVPVD+Y+PGCPP ALIYGI L++KIR Sbjct: 127 GVDQIVPVDVYIPGCPPNPAALIYGINKLKEKIR 160 >gi|47569794|ref|ZP_00240465.1| NADH dehydrogenase I, B subunit [Bacillus cereus G9241] gi|47553536|gb|EAL11916.1| NADH dehydrogenase I, B subunit [Bacillus cereus G9241] Length = 172 Score = 230 bits (588), Expect = 5e-59, Method: Composition-based stats. Identities = 88/154 (57%), Positives = 111/154 (72%) Query: 25 DFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF 84 + + ++++QL WAR+ SL MTFGLACCA+EMM YDL+RFG Sbjct: 7 ELHPNERAELERNIFFSTLEQLKGWARSNSLWPMTFGLACCAIEMMGVGSSHYDLDRFGS 66 Query: 85 APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR 144 R SPRQSDVMIV+GT+T KMA +RR+YDQMPEP++VI+MGSCA GG Y SY+VV+ Sbjct: 67 FFRTSPRQSDVMIVSGTVTKKMAPIVRRLYDQMPEPKWVIAMGSCATAGGPYINSYAVVK 126 Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 G D+IVPVD+Y+PGCPP ALIYGI L++KIR Sbjct: 127 GVDQIVPVDVYIPGCPPNPAALIYGINKLKEKIR 160 >gi|34498210|ref|NP_902425.1| NADH dehydrogenase subunit B [Chromobacterium violaceum ATCC 12472] gi|81655254|sp|Q7NUE5|NUOB2_CHRVO RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName: Full=NADH dehydrogenase I subunit B 2; AltName: Full=NDH-1 subunit B 2 gi|34104063|gb|AAQ60423.1| NADH-ubiquinone oxidoreductase, chain B [Chromobacterium violaceum ATCC 12472] Length = 171 Score = 230 bits (588), Expect = 5e-59, Method: Composition-based stats. Identities = 108/153 (70%), Positives = 132/153 (86%) Query: 30 SSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS 89 S + GFL+T++D L A++GSL +++FGLACCAVEMM A+ RYD++RFG+ PRA+ Sbjct: 3 SPSLEKDGFLLTTLDGLFGRAQSGSLWYLSFGLACCAVEMMHAAAARYDMDRFGWIPRAT 62 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQ+D+MIVAGTLTNKMA A+R+VYDQM EPRYV+SMGSCANGGGYYHYSY+VVRGCDRI Sbjct: 63 PRQADLMIVAGTLTNKMAPAMRKVYDQMSEPRYVLSMGSCANGGGYYHYSYAVVRGCDRI 122 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182 VPVD+YVPGCPPTAEAL+YG++ LQ KIRR Sbjct: 123 VPVDVYVPGCPPTAEALLYGLMQLQAKIRRDDT 155 >gi|328353181|emb|CCA39579.1| NADH dehydrogenase (ubiquinone) Fe-S protein 7 [Pichia pastoris CBS 7435] Length = 282 Score = 230 bits (588), Expect = 6e-59, Method: Composition-based stats. Identities = 104/140 (74%), Positives = 117/140 (83%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 + T+ D++ WAR S MTFGLACCAVEMM S PRYD +R G RASPRQSD+MI Sbjct: 130 YTFTTFDKMKNWARKSSFWPMTFGLACCAVEMMHVSAPRYDQDRLGIIFRASPRQSDIMI 189 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGT+TNKMA ALR+VYDQMP PR+VISMGSCANGGGYYHYSYSVVRG DRIVPVDIYVP Sbjct: 190 VAGTVTNKMAPALRQVYDQMPYPRWVISMGSCANGGGYYHYSYSVVRGVDRIVPVDIYVP 249 Query: 158 GCPPTAEALIYGILLLQKKI 177 GCPPT+EAL+YG+ LQKK+ Sbjct: 250 GCPPTSEALMYGVFQLQKKM 269 >gi|170592879|ref|XP_001901192.1| Probable NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrialprecursor [Brugia malayi] gi|158591259|gb|EDP29872.1| Probable NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrialprecursor , putative [Brugia malayi] Length = 216 Score = 230 bits (587), Expect = 6e-59, Method: Composition-based stats. Identities = 105/153 (68%), Positives = 121/153 (79%) Query: 30 SSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS 89 + VT +D L SL MTFGLACCAVEMM + PRYD++RFG RAS Sbjct: 57 QDPLPKGEMAVTRLDDLNNMIHRCSLWPMTFGLACCAVEMMHFAAPRYDMDRFGVVFRAS 116 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQSDVMIVAGT+TNKMA A+RRVYDQMPEP++VISMGSCANGGGYYHYSYSV++G DRI Sbjct: 117 PRQSDVMIVAGTVTNKMAPAVRRVYDQMPEPKWVISMGSCANGGGYYHYSYSVLKGVDRI 176 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182 +PVDIYVPGCPP+AEAL+YG+L LQKKI+R Sbjct: 177 IPVDIYVPGCPPSAEALLYGVLQLQKKIKRKRE 209 >gi|288926087|ref|ZP_06420015.1| proton-translocating NADH-quinone oxidoreductase, B subunit [Prevotella buccae D17] gi|288337127|gb|EFC75485.1| proton-translocating NADH-quinone oxidoreductase, B subunit [Prevotella buccae D17] Length = 287 Score = 230 bits (587), Expect = 6e-59, Method: Composition-based stats. Identities = 76/161 (47%), Positives = 113/161 (70%), Gaps = 3/161 (1%) Query: 21 KVDADFSRISSEITHKGF--LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78 K + +++ E+ G ++ ++DQL+ W R+ SL +TF +CC +E M RYD Sbjct: 17 KDNGTLEKMADELNEGGVNLVLGNLDQLINWGRSNSLWSLTFATSCCGIEFMATGCARYD 76 Query: 79 LERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137 RFGF R SPRQ+D+++ AGT+TNKMA AL+R+YD+M EP+YV+++G CA GG + Sbjct: 77 FSRFGFEVTRNSPRQADLIMCAGTITNKMAPALKRLYDEMAEPKYVVAVGGCAISGGPFK 136 Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 SY VVRG D I+PVD+Y+PGCPP EA++YG++ LQ+K++ Sbjct: 137 SSYHVVRGIDEIIPVDVYIPGCPPRPEAIMYGMMQLQRKVK 177 >gi|218900425|ref|YP_002448836.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus cereus G9842] gi|238065059|sp|B7IQV2|NUOB_BACC2 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|218541670|gb|ACK94064.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus cereus G9842] Length = 172 Score = 230 bits (587), Expect = 6e-59, Method: Composition-based stats. Identities = 88/145 (60%), Positives = 110/145 (75%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93 + ++++QL WAR+ SL MTFGLACCA+EMM YDL+RFG R SPRQS Sbjct: 16 LERNIFFSTLEQLKGWARSNSLWPMTFGLACCAIEMMGVGSSHYDLDRFGSFFRTSPRQS 75 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD 153 DVMIV+GT+T KMA +RR+YDQMPEP++VI+MGSCA GG Y SY+VV+G D+IVPVD Sbjct: 76 DVMIVSGTVTKKMAPIVRRLYDQMPEPKWVIAMGSCATAGGPYVNSYAVVKGVDQIVPVD 135 Query: 154 IYVPGCPPTAEALIYGILLLQKKIR 178 +Y+PGCPP ALIYGI L++KIR Sbjct: 136 VYIPGCPPNPAALIYGINKLKEKIR 160 >gi|148266253|ref|YP_001232959.1| NADH-quinone oxidoreductase, B subunit [Geobacter uraniireducens Rf4] gi|238065155|sp|A5G9B8|NUOB_GEOUR RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|146399753|gb|ABQ28386.1| NADH dehydrogenase subunit B [Geobacter uraniireducens Rf4] Length = 170 Score = 230 bits (587), Expect = 7e-59, Method: Composition-based stats. Identities = 80/152 (52%), Positives = 108/152 (71%), Gaps = 1/152 (0%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP 90 + + S+D LV WAR S+ MTFGLACCA+EMM ++DL+RFG RASP Sbjct: 4 EQPLGDNIVTASLDGLVNWARKSSIWPMTFGLACCAIEMMATGAAKHDLDRFGIIFRASP 63 Query: 91 RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150 RQSD +I+AGT+T KM ++ VY+QMPEP++VI+MG+CA GG + +YSVV+G D + Sbjct: 64 RQSDCIIIAGTVTKKMLPVIKTVYEQMPEPKWVIAMGACACSGGVF-DTYSVVQGVDEAL 122 Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182 PVD+Y+PGCPP EAL+YG++ LQ KI + N Sbjct: 123 PVDVYIPGCPPRPEALLYGLMKLQDKIGKERN 154 >gi|260940357|ref|XP_002614478.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720] gi|238851664|gb|EEQ41128.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720] Length = 208 Score = 230 bits (586), Expect = 8e-59, Method: Composition-based stats. Identities = 108/185 (58%), Positives = 133/185 (71%), Gaps = 2/185 (1%) Query: 2 GLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMT 59 L ++++ + ++ D +S + + +TS+D + WAR S +T Sbjct: 19 ALRFASKQVGLPAKDLTPRPMETDLPLMSQKTASSPIDYALTSLDAIAMWARKSSFWPVT 78 Query: 60 FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119 FGLACCAVEMM S PRYD +R G RASPRQSD+MIVAGTLTNKMA ALR+VYDQM + Sbjct: 79 FGLACCAVEMMHVSTPRYDQDRLGIIFRASPRQSDIMIVAGTLTNKMAPALRQVYDQMAD 138 Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179 PR+VISMGSCANGGGYYHYSYSVVRGCDR+VPVDIYVPGCPPTAEAL+YG+ LQKK+ + Sbjct: 139 PRWVISMGSCANGGGYYHYSYSVVRGCDRVVPVDIYVPGCPPTAEALMYGVFQLQKKMMK 198 Query: 180 VGNVK 184 + Sbjct: 199 TRVTR 203 >gi|312130053|ref|YP_003997393.1| NADH dehydrogenase subunit b [Leadbetterella byssophila DSM 17132] gi|311906599|gb|ADQ17040.1| NADH dehydrogenase subunit B [Leadbetterella byssophila DSM 17132] Length = 169 Score = 230 bits (586), Expect = 8e-59, Method: Composition-based stats. Identities = 90/163 (55%), Positives = 119/163 (73%), Gaps = 4/163 (2%) Query: 19 LEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78 LE +++++ S E ++T++D+L WAR SL M FGLACCA+EMM YD Sbjct: 2 LESLESNYWEKSGE---GEVILTNLDELTNWARANSLWPMGFGLACCAIEMMATFASSYD 58 Query: 79 LERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY 138 LERFG PR SPRQSD+MI++GT+T KMA +RR+Y+QM EPRYVISMGSC+N GG Y Sbjct: 59 LERFGIFPRNSPRQSDLMIISGTVTFKMADRVRRLYEQMAEPRYVISMGSCSNCGGPYWE 118 Query: 139 -SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 Y V++G D+++PVD+YVPGCPP EALI G++ LQ+KI+R Sbjct: 119 HGYHVLKGVDKVIPVDVYVPGCPPRPEALIGGLIKLQEKIKRQ 161 >gi|212640517|ref|YP_002317037.1| NADH dehydrogenase subunit B [Anoxybacillus flavithermus WK1] gi|238065054|sp|B7GMF0|NUOB_ANOFW RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|212561997|gb|ACJ35052.1| NADH dehydrogenase subunit B [Anoxybacillus flavithermus WK1] Length = 177 Score = 230 bits (586), Expect = 8e-59, Method: Composition-based stats. Identities = 89/147 (60%), Positives = 111/147 (75%) Query: 32 EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPR 91 E + +T+++QL WAR+ SL +TFGLACCA+EMM YDL+RFG R SPR Sbjct: 21 EEMRRNVFLTTLEQLKAWARSNSLWPLTFGLACCAIEMMGVGSSHYDLDRFGSFFRTSPR 80 Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151 QSDVMIV+GT+T KMA +RR+YDQMPEP++VI+MGSCA GG Y SY VV+G D+IVP Sbjct: 81 QSDVMIVSGTVTKKMAPIVRRLYDQMPEPKWVIAMGSCATAGGPYVKSYCVVKGVDQIVP 140 Query: 152 VDIYVPGCPPTAEALIYGILLLQKKIR 178 VD+Y+PGCPP ALIYGI L++KIR Sbjct: 141 VDVYIPGCPPNPAALIYGINKLKEKIR 167 >gi|315608360|ref|ZP_07883349.1| NADH-quinone oxidoreductase subunit B [Prevotella buccae ATCC 33574] gi|315249990|gb|EFU29990.1| NADH-quinone oxidoreductase subunit B [Prevotella buccae ATCC 33574] Length = 287 Score = 230 bits (586), Expect = 9e-59, Method: Composition-based stats. Identities = 76/161 (47%), Positives = 113/161 (70%), Gaps = 3/161 (1%) Query: 21 KVDADFSRISSEITHKGF--LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78 K + +++ E+ G ++ ++DQL+ W R+ SL +TF +CC +E M RYD Sbjct: 17 KDNGTLEKMADELNEGGVNLVLGNLDQLINWGRSNSLWSLTFATSCCGIEFMATGCARYD 76 Query: 79 LERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137 RFGF R SPRQ+D+++ AGT+TNKMA AL+R+YD+M EP+YV+++G CA GG + Sbjct: 77 FSRFGFEVTRNSPRQADLIMCAGTITNKMAPALKRLYDEMAEPKYVVAVGGCAVSGGPFK 136 Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 SY VVRG D I+PVD+Y+PGCPP EA++YG++ LQ+K++ Sbjct: 137 SSYHVVRGIDEIIPVDVYIPGCPPRPEAIMYGMMQLQRKVK 177 >gi|300727166|ref|ZP_07060584.1| NADH dehydrogenase I, b subunit [Prevotella bryantii B14] gi|299775552|gb|EFI72144.1| NADH dehydrogenase I, b subunit [Prevotella bryantii B14] Length = 254 Score = 229 bits (585), Expect = 1e-58, Method: Composition-based stats. Identities = 73/161 (45%), Positives = 111/161 (68%), Gaps = 3/161 (1%) Query: 21 KVDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78 K + +I++E+ G ++ S+D + W R+ S +TFG +CC +E M RYD Sbjct: 18 KDNDSLEKIAAELNEGGANVVLGSLDAAINWGRSNSPWSLTFGTSCCGIEFMAIGCARYD 77 Query: 79 LERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137 + RFG+ R SPRQ+D+++ AGT+TNKMA +R+YD+M EP+YV+++G C GG + Sbjct: 78 MSRFGWEVTRNSPRQADLIMCAGTITNKMAPVFKRLYDEMAEPKYVVAVGGCTISGGPFK 137 Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 SY+VVRG + +VPVD+Y+PGCPP EA+IYG++ LQ+KI+ Sbjct: 138 KSYNVVRGINELVPVDVYIPGCPPRPEAIIYGMMQLQRKIK 178 >gi|332971775|gb|EGK10723.1| NADH-quinone oxidoreductase subunit B [Desmospora sp. 8437] Length = 175 Score = 229 bits (585), Expect = 1e-58, Method: Composition-based stats. Identities = 92/144 (63%), Positives = 110/144 (76%) Query: 35 HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSD 94 + T+++ + WAR+ SL MTFGLACCA+EMM P YDL+RFG RASPRQSD Sbjct: 17 QRNVFTTTLENVKAWARSNSLWPMTFGLACCAIEMMGTGAPHYDLDRFGSFFRASPRQSD 76 Query: 95 VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154 VMIVAGT+T KM LRR+YDQMPEP++VI+MGSCA GG Y SYSVV+G D+IVPVD+ Sbjct: 77 VMIVAGTVTKKMGPLLRRLYDQMPEPKWVIAMGSCATAGGPYVKSYSVVKGVDQIVPVDV 136 Query: 155 YVPGCPPTAEALIYGILLLQKKIR 178 Y+PGCPP ALIYGI LQ+KIR Sbjct: 137 YIPGCPPNPAALIYGIHKLQEKIR 160 >gi|189426186|ref|YP_001953363.1| NADH-quinone oxidoreductase, B subunit [Geobacter lovleyi SZ] gi|238065152|sp|B3E9W8|NUOB_GEOLS RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|189422445|gb|ACD96843.1| NADH-quinone oxidoreductase, B subunit [Geobacter lovleyi SZ] Length = 169 Score = 229 bits (585), Expect = 1e-58, Method: Composition-based stats. Identities = 80/152 (52%), Positives = 108/152 (71%), Gaps = 1/152 (0%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP 90 ++ VTS+D+LV W R S+ MTFGLACCA+EMM DL+RFG RASP Sbjct: 4 NQPLGGNVTVTSLDKLVNWVRKSSIWPMTFGLACCAIEMMATGASHNDLDRFGIIFRASP 63 Query: 91 RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150 RQ+D +I+AGT+T KM ++ VY+QMPEP++VI+MG+CA GG + +YSVV+G D + Sbjct: 64 RQADCIIIAGTVTKKMLPVIQTVYEQMPEPKWVIAMGACACSGGIF-DTYSVVQGIDEAL 122 Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182 PVD+Y+PGCPP EAL+YG++ LQ KI + N Sbjct: 123 PVDVYIPGCPPRPEALLYGLMKLQDKIMQESN 154 >gi|296232412|ref|XP_002761582.1| PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial-like [Callithrix jacchus] Length = 305 Score = 229 bits (585), Expect = 1e-58, Method: Composition-based stats. Identities = 107/181 (59%), Positives = 127/181 (70%), Gaps = 2/181 (1%) Query: 6 VNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACC 65 V+Q + + S + + + + + ++V +D L+ WAR SL MTFGLACC Sbjct: 120 VHQTVATNGPSSTQPALPKARAVVPKPSSRGEYVVAKLDDLINWARRSSLWPMTFGLACC 179 Query: 66 AVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVIS 125 AVEMM + PRYD++RFG RASPRQSDVMIVAGTLTNKMA ALRRV P P Sbjct: 180 AVEMMHMAAPRYDMDRFGVVFRASPRQSDVMIVAGTLTNKMAPALRRVGRVGPWPPLPSR 239 Query: 126 M--GSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 SCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQ+KI+R + Sbjct: 240 RLPHSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQRKIKRERRL 299 Query: 184 K 184 + Sbjct: 300 Q 300 >gi|145612789|ref|XP_360493.2| hypothetical protein MGG_10805 [Magnaporthe oryzae 70-15] gi|145019908|gb|EDK04136.1| hypothetical protein MGG_10805 [Magnaporthe oryzae 70-15] Length = 147 Score = 229 bits (585), Expect = 1e-58, Method: Composition-based stats. Identities = 100/142 (70%), Positives = 121/142 (85%) Query: 43 VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL 102 +D+L+ WAR GS+ +TF LACC +EMM SMPRYD +R G RASPRQ+DVMIVAGT+ Sbjct: 1 MDRLLAWARNGSMWPLTFALACCGIEMMHLSMPRYDQDRLGIIFRASPRQADVMIVAGTV 60 Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162 TNKMA A+R+ YDQMP+P++VISMG+CANGGGYYHYSYSVVRG DRI+PVDIYVPGCPPT Sbjct: 61 TNKMAPAVRQCYDQMPDPKWVISMGTCANGGGYYHYSYSVVRGVDRILPVDIYVPGCPPT 120 Query: 163 AEALIYGILLLQKKIRRVGNVK 184 AEAL+YG+L LQKKI++ + Sbjct: 121 AEALMYGLLQLQKKIQKTKVTR 142 >gi|167588033|ref|ZP_02380421.1| NADH dehydrogenase subunit B [Burkholderia ubonensis Bu] Length = 167 Score = 229 bits (585), Expect = 1e-58, Method: Composition-based stats. Identities = 109/151 (72%), Positives = 128/151 (84%) Query: 32 EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPR 91 + GF+VTS++ ++ ART SL +MTFGLACCAVEMM A+ RYD++RFG PRASPR Sbjct: 7 TLEKDGFVVTSLEAVMAAARTNSLWYMTFGLACCAVEMMHAAGARYDMDRFGMIPRASPR 66 Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151 Q D+MIV+GTLTNKMA A+R+VYDQM EPRYV+SMGSCANGGGYYHYSYSVVRGCDRIVP Sbjct: 67 QCDLMIVSGTLTNKMAPAMRKVYDQMAEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVP 126 Query: 152 VDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182 VD+YVPGCPPTAEALIYG++ LQ+KI Sbjct: 127 VDVYVPGCPPTAEALIYGLMQLQRKIMEQST 157 >gi|222053571|ref|YP_002535933.1| NADH-quinone oxidoreductase, B subunit [Geobacter sp. FRC-32] gi|238065153|sp|B9LZL8|NUOB_GEOSF RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|221562860|gb|ACM18832.1| NADH-quinone oxidoreductase, B subunit [Geobacter sp. FRC-32] Length = 170 Score = 229 bits (584), Expect = 1e-58, Method: Composition-based stats. Identities = 81/152 (53%), Positives = 108/152 (71%), Gaps = 1/152 (0%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP 90 + + S+D LV WAR S+ MTFGLACCA+EMM ++DL+RFG RASP Sbjct: 4 EQPLGDNIVTASLDGLVNWARKTSIWPMTFGLACCAIEMMATGAAKHDLDRFGIIFRASP 63 Query: 91 RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150 RQ+D +I+AGT+T KM ++ VY+QMPEP++VI+MG+CA GG + +YSVV+G D + Sbjct: 64 RQADCIIIAGTVTKKMLPVIKTVYEQMPEPKWVIAMGACACSGGVF-DTYSVVQGIDEAL 122 Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182 PVD+YVPGCPP EAL+YGI+ LQ KI + N Sbjct: 123 PVDVYVPGCPPRPEALLYGIMKLQDKIGKERN 154 >gi|212693812|ref|ZP_03301940.1| hypothetical protein BACDOR_03333 [Bacteroides dorei DSM 17855] gi|237709340|ref|ZP_04539821.1| trifunctional NADH dehydrogenase I subunit B/C/D [Bacteroides sp. 9_1_42FAA] gi|237724574|ref|ZP_04555055.1| trifunctional NADH dehydrogenase I subunit B/C/D [Bacteroides sp. D4] gi|265755015|ref|ZP_06089929.1| NADH-quinone oxidoreductase [Bacteroides sp. 3_1_33FAA] gi|212663701|gb|EEB24275.1| hypothetical protein BACDOR_03333 [Bacteroides dorei DSM 17855] gi|229437133|gb|EEO47210.1| trifunctional NADH dehydrogenase I subunit B/C/D [Bacteroides dorei 5_1_36/D4] gi|229456725|gb|EEO62446.1| trifunctional NADH dehydrogenase I subunit B/C/D [Bacteroides sp. 9_1_42FAA] gi|263234626|gb|EEZ20205.1| NADH-quinone oxidoreductase [Bacteroides sp. 3_1_33FAA] Length = 198 Score = 229 bits (584), Expect = 1e-58, Method: Composition-based stats. Identities = 76/161 (47%), Positives = 110/161 (68%), Gaps = 3/161 (1%) Query: 21 KVDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78 K + + ++ G LV +D L+ W R+ SL +TF +CC +E M RYD Sbjct: 17 KNNEYLENMVKQLNESGTKVLVGCLDDLINWGRSNSLWPLTFATSCCGIEFMAVGAARYD 76 Query: 79 LERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137 RFGF RASPRQ+D+++VAGT+T+KMA L+R+YDQM +P+YVI++G CA GG + Sbjct: 77 FARFGFEVARASPRQADMIMVAGTITHKMAPVLKRLYDQMADPKYVIAVGGCAISGGPFK 136 Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 SY V+ G D+I+PVD+Y+PGCPP EAL+YG++ LQ+K++ Sbjct: 137 KSYHVLNGVDKILPVDVYIPGCPPRPEALLYGMIQLQRKVK 177 >gi|325269277|ref|ZP_08135895.1| NADH dehydrogenase I subunit B [Prevotella multiformis DSM 16608] gi|324988404|gb|EGC20369.1| NADH dehydrogenase I subunit B [Prevotella multiformis DSM 16608] Length = 297 Score = 229 bits (584), Expect = 1e-58, Method: Composition-based stats. Identities = 78/161 (48%), Positives = 115/161 (71%), Gaps = 3/161 (1%) Query: 21 KVDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78 K + S+++SE+ G ++ ++DQL+ W R+ SL +TF +CC +E M RYD Sbjct: 17 KDNDTLSKMASELNDGGTNLVLGNLDQLINWGRSNSLWSLTFATSCCGIEFMAVGCARYD 76 Query: 79 LERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137 RFGF R SPRQ+D+++ AGT+TNKMA AL+R+YD+M EP+YVI++G CA GG + Sbjct: 77 FSRFGFEVTRNSPRQADLIMCAGTITNKMAPALKRLYDEMAEPKYVIAVGGCAISGGPFK 136 Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 SY V+RG D I+PVD+Y+PGCPP EA++YG++ LQ+K++ Sbjct: 137 DSYHVMRGIDEIIPVDVYIPGCPPRPEAIVYGMMQLQRKVK 177 >gi|312077007|ref|XP_003141114.1| NADH-ubiquinone oxidoreductase Fe-S protein 7 [Loa loa] gi|307763722|gb|EFO22956.1| NADH-ubiquinone oxidoreductase Fe-S protein 7 [Loa loa] Length = 204 Score = 229 bits (584), Expect = 1e-58, Method: Composition-based stats. Identities = 105/154 (68%), Positives = 121/154 (78%) Query: 30 SSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS 89 + VT +D L SL MTFGLACCAVEMM + PRYD++RFG RAS Sbjct: 51 QDPLPKGEMAVTRLDDLNNMIHRSSLWPMTFGLACCAVEMMHFAAPRYDMDRFGVVFRAS 110 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQSDVMIVAGT+TNKMA A+RRVYDQMPEP++VISMGSCANGGGYYHYSYSV++G DRI Sbjct: 111 PRQSDVMIVAGTVTNKMAPAVRRVYDQMPEPKWVISMGSCANGGGYYHYSYSVLKGVDRI 170 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 +PVDIYVPGCPP+AEAL+YG+L LQKK+ G V Sbjct: 171 IPVDIYVPGCPPSAEALLYGVLQLQKKLSGNGRV 204 >gi|319650861|ref|ZP_08004998.1| NADH dehydrogenase subunit B [Bacillus sp. 2_A_57_CT2] gi|317397459|gb|EFV78160.1| NADH dehydrogenase subunit B [Bacillus sp. 2_A_57_CT2] Length = 177 Score = 229 bits (584), Expect = 2e-58, Method: Composition-based stats. Identities = 90/155 (58%), Positives = 113/155 (72%) Query: 24 ADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFG 83 + S E + + +++Q+ WAR+ SL MTFGLACCA+EMM YDL+RFG Sbjct: 13 DNISPEEMEELQRNVFMATLEQIKAWARSNSLWPMTFGLACCAIEMMGVGSSHYDLDRFG 72 Query: 84 FAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVV 143 R SPRQSDVMIV+GT+T KMA +RR+YDQMPEP++VI+MGSCA GG Y SYSVV Sbjct: 73 SFFRTSPRQSDVMIVSGTVTKKMAPIVRRLYDQMPEPKWVIAMGSCATAGGPYVKSYSVV 132 Query: 144 RGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 +G D+IVPVD+Y+PGCPP ALIYGI L++KIR Sbjct: 133 KGVDQIVPVDVYIPGCPPNPAALIYGINKLKEKIR 167 >gi|89900287|ref|YP_522758.1| NADH dehydrogenase subunit B [Rhodoferax ferrireducens T118] gi|122479525|sp|Q21YC6|NUOB_RHOFD RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|89345024|gb|ABD69227.1| NADH-quinone oxidoreductase, B subunit [Rhodoferax ferrireducens T118] Length = 159 Score = 229 bits (584), Expect = 2e-58, Method: Composition-based stats. Identities = 111/152 (73%), Positives = 126/152 (82%), Gaps = 1/152 (0%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPR 91 I +GF+ TS D ++ WA+TGSL M+FGLACCAVEMM A+ RYD+ RFG RASPR Sbjct: 5 ILKEGFITTSYDSVMNWAKTGSLWPMSFGLACCAVEMMHAANARYDISRFGAEVFRASPR 64 Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151 QSD++IVAGTL NKMA A R+VYDQM EPR VISMGSCANGGGYYHYSYSVVRGCDRIVP Sbjct: 65 QSDLIIVAGTLCNKMAPAFRKVYDQMSEPRRVISMGSCANGGGYYHYSYSVVRGCDRIVP 124 Query: 152 VDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 VD+YVPGCPPTAEAL+YGI+ LQ KIRR + Sbjct: 125 VDVYVPGCPPTAEALLYGIIQLQHKIRRTQTI 156 >gi|238493105|ref|XP_002377789.1| formate hydrogenlyase, putative [Aspergillus flavus NRRL3357] gi|220696283|gb|EED52625.1| formate hydrogenlyase, putative [Aspergillus flavus NRRL3357] Length = 228 Score = 229 bits (583), Expect = 2e-58, Method: Composition-based stats. Identities = 107/182 (58%), Positives = 133/182 (73%), Gaps = 4/182 (2%) Query: 7 NQKIISGQSSCSLEKVDADFSRISSEITHKG----FLVTSVDQLVTWARTGSLMWMTFGL 62 + S + ++ K+ + I++ + +T+ DQL+ WAR GSL +TF L Sbjct: 42 QTRQSSTWNPHTVPKLPSQEQGITTNKKEDNGKLEYFLTTTDQLINWARQGSLWPLTFAL 101 Query: 63 ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122 ACC +EMM SMPRYD +R G RASPRQ+DVMIVAGT+TNKMA ALR++YDQMP+P++ Sbjct: 102 ACCGIEMMHVSMPRYDQDRLGIIFRASPRQADVMIVAGTVTNKMAPALRQLYDQMPDPKW 161 Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182 VISMGSCANGGGYY+YSYSVVRG DR+VPVDIYVPGCPPT EAL+Y I LQKKIRR Sbjct: 162 VISMGSCANGGGYYYYSYSVVRGVDRVVPVDIYVPGCPPTPEALMYAIFQLQKKIRRTKV 221 Query: 183 VK 184 + Sbjct: 222 TR 223 >gi|193212957|ref|YP_001998910.1| NADH dehydrogenase subunit B [Chlorobaculum parvum NCIB 8327] gi|238055284|sp|B3QP57|NUOB_CHLP8 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|193086434|gb|ACF11710.1| NADH-quinone oxidoreductase, B subunit [Chlorobaculum parvum NCIB 8327] Length = 189 Score = 229 bits (583), Expect = 2e-58, Method: Composition-based stats. Identities = 89/154 (57%), Positives = 117/154 (75%), Gaps = 1/154 (0%) Query: 29 ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88 + ++++++ LVTSVD ++ WAR SL M FGLACCA+EMM + YDLERFG PR+ Sbjct: 4 LDAKVSNRNVLVTSVDNVMNWARLSSLWPMGFGLACCAIEMMATNASNYDLERFGIFPRS 63 Query: 89 SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCD 147 SPRQSD+MIVAGT+T KMA + +Y+QMPEPRYV+SMGSC+N GG Y Y V++G D Sbjct: 64 SPRQSDLMIVAGTVTMKMAERVVTLYEQMPEPRYVLSMGSCSNCGGPYWDHGYHVLKGVD 123 Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181 R++PVD+YVPGCPP EALI G++ +Q+ IR G Sbjct: 124 RVIPVDVYVPGCPPRPEALIGGLMKIQELIRMEG 157 >gi|291515382|emb|CBK64592.1| NADH dehydrogenase subunit B [Alistipes shahii WAL 8301] Length = 218 Score = 229 bits (583), Expect = 2e-58, Method: Composition-based stats. Identities = 75/160 (46%), Positives = 109/160 (68%), Gaps = 3/160 (1%) Query: 22 VDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDL 79 + ++ E+ G + +D+++ W R+ SL +TF +CC +E M RYD Sbjct: 18 DNEYLEQMVRELRENGTHVVAGCLDEVINWGRSNSLWPLTFATSCCGIEFMAVGAARYDF 77 Query: 80 ERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY 138 RFGF RASPRQ+D ++VAGT+T+KMA LRR+YDQM +P+YVI++G CA GG + Sbjct: 78 ARFGFEVARASPRQADFIMVAGTITHKMAPVLRRLYDQMADPKYVIAVGGCAISGGPFKK 137 Query: 139 SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 SY VV G DRI+PVD+Y+PGCPP EA++YG++ LQ+K++ Sbjct: 138 SYHVVNGVDRILPVDVYIPGCPPRPEAMLYGLMQLQRKVK 177 >gi|302345400|ref|YP_003813753.1| NADH-quinone oxidoreductase, B subunit [Prevotella melaninogenica ATCC 25845] gi|302149419|gb|ADK95681.1| NADH-quinone oxidoreductase, B subunit [Prevotella melaninogenica ATCC 25845] Length = 305 Score = 229 bits (583), Expect = 2e-58, Method: Composition-based stats. Identities = 80/161 (49%), Positives = 115/161 (71%), Gaps = 3/161 (1%) Query: 21 KVDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78 K + S+++SE+ G ++ ++DQL+ W R+ SL +TF +CC +E M RYD Sbjct: 17 KDNDTLSKMASELNDGGTNLVLGNLDQLINWGRSNSLWSLTFATSCCGIEFMSVGCARYD 76 Query: 79 LERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137 RFGF R SPRQ+D+++ AGT+TNKMA AL+R+YDQM EP+YVI++G CA GG + Sbjct: 77 FSRFGFEVTRNSPRQADLIMCAGTITNKMAPALKRLYDQMAEPKYVIAVGGCAISGGPFK 136 Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 SY V+RG D I+PVD+Y+PGCPP EA+IYG++ LQ+K++ Sbjct: 137 DSYHVMRGIDEIIPVDVYIPGCPPRPEAIIYGMMQLQRKVK 177 >gi|288803376|ref|ZP_06408809.1| NADH dehydrogenase I, B/C/D subunit protein [Prevotella melaninogenica D18] gi|288334196|gb|EFC72638.1| NADH dehydrogenase I, B/C/D subunit protein [Prevotella melaninogenica D18] Length = 308 Score = 228 bits (582), Expect = 2e-58, Method: Composition-based stats. Identities = 80/161 (49%), Positives = 115/161 (71%), Gaps = 3/161 (1%) Query: 21 KVDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78 K + S+++SE+ G ++ ++DQL+ W R+ SL +TF +CC +E M RYD Sbjct: 17 KDNDTLSKMASELNDGGTNLVLGNLDQLINWGRSNSLWSLTFATSCCGIEFMSVGCARYD 76 Query: 79 LERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137 RFGF R SPRQ+D+++ AGT+TNKMA AL+R+YDQM EP+YVI++G CA GG + Sbjct: 77 FSRFGFEVTRNSPRQADLIMCAGTITNKMAPALKRLYDQMAEPKYVIAVGGCAISGGPFK 136 Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 SY V+RG D I+PVD+Y+PGCPP EA+IYG++ LQ+K++ Sbjct: 137 DSYHVMRGIDEIIPVDVYIPGCPPRPEAIIYGMMQLQRKVK 177 >gi|225874130|ref|YP_002755589.1| NADH dehydrogenase I, B subunit [Acidobacterium capsulatum ATCC 51196] gi|225792992|gb|ACO33082.1| NADH dehydrogenase I, B subunit [Acidobacterium capsulatum ATCC 51196] Length = 216 Score = 228 bits (582), Expect = 2e-58, Method: Composition-based stats. Identities = 77/157 (49%), Positives = 110/157 (70%), Gaps = 1/157 (0%) Query: 22 VDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLER 81 + E++ G T++++L W R S+ +TFGLACCA+EM+ +M RYDL R Sbjct: 7 APQQLKDLKVELSKNGVFTTTLEELYNWGRRSSVWPLTFGLACCAIEMIATTMARYDLAR 66 Query: 82 FGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSY 140 FG R SPRQ+D++IV+GT+T KMA + R+Y+QMPEP+YVI+MG+CA GG + Y Sbjct: 67 FGAEVFRPSPRQADLIIVSGTVTKKMAPQVVRLYNQMPEPKYVIAMGACAISGGPFRDGY 126 Query: 141 SVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 +V++G DR +PVD+++PGCPP EALI+ + LQKKI Sbjct: 127 NVLKGIDRYIPVDVHIPGCPPRPEALIHAFMTLQKKI 163 >gi|325857136|ref|ZP_08172426.1| NADH-quinone oxidoreductase, B subunit [Prevotella denticola CRIS 18C-A] gi|327313379|ref|YP_004328816.1| NADH-quinone oxidoreductase subunit B [Prevotella denticola F0289] gi|325483199|gb|EGC86177.1| NADH-quinone oxidoreductase, B subunit [Prevotella denticola CRIS 18C-A] gi|326945576|gb|AEA21461.1| NADH-quinone oxidoreductase, B subunit [Prevotella denticola F0289] Length = 297 Score = 228 bits (582), Expect = 3e-58, Method: Composition-based stats. Identities = 77/161 (47%), Positives = 114/161 (70%), Gaps = 3/161 (1%) Query: 21 KVDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78 K + +++SE+ G ++ ++DQL+ W R+ SL +TF +CC +E M RYD Sbjct: 17 KDNDTLGKMASELNDGGTNLVLGNLDQLINWGRSNSLWSLTFATSCCGIEFMAVGCARYD 76 Query: 79 LERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137 RFGF R SPRQ+D+++ AGT+TNKMA AL+R+YD+M EP+YV+++G CA GG + Sbjct: 77 FSRFGFEVTRNSPRQADLIMCAGTITNKMAPALKRLYDEMAEPKYVVAVGGCAISGGPFK 136 Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 SY V+RG D I+PVD+Y+PGCPP EA+IYG++ LQ+K++ Sbjct: 137 DSYHVMRGIDEIIPVDVYIPGCPPRPEAIIYGMMQLQRKVK 177 >gi|167630265|ref|YP_001680764.1| proton-translocating NADH-ubiquinone oxidoreductase, chain b [Heliobacterium modesticaldum Ice1] gi|238065157|sp|B0TH78|NUOB_HELMI RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|167593005|gb|ABZ84753.1| proton-translocating NADH-ubiquinone oxidoreductase, chain b [Heliobacterium modesticaldum Ice1] Length = 175 Score = 228 bits (582), Expect = 3e-58, Method: Composition-based stats. Identities = 82/165 (49%), Positives = 115/165 (69%), Gaps = 1/165 (0%) Query: 20 EKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDL 79 + VD E+ K ++TS++ + WAR SL ++ GLACCA+EMM R+D+ Sbjct: 5 KNVDTLSEGQVDELIKKNIIMTSLEAVFNWARGNSLWPLSSGLACCAIEMMATGASRFDM 64 Query: 80 ERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY 138 RFG+ R SPRQ+D++I+AGTLT KMA A++RVY+QMPEP+++I+MGSCA GG + Sbjct: 65 ARFGYEVFRPSPRQADLIIIAGTLTWKMAPAIQRVYEQMPEPKWIIAMGSCACTGGPFAD 124 Query: 139 SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 SY+VV G D+++PVD+YVPGCPP EAL+ G L L+ KI+ V Sbjct: 125 SYAVVPGVDKVIPVDVYVPGCPPRPEALLDGFLKLKAKIQNPAKV 169 >gi|108804469|ref|YP_644406.1| NADH-quinone oxidoreductase subunit B [Rubrobacter xylanophilus DSM 9941] gi|123069071|sp|Q1AVI4|NUOB_RUBXD RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|108765712|gb|ABG04594.1| NADH-quinone oxidoreductase, B subunit [Rubrobacter xylanophilus DSM 9941] Length = 251 Score = 228 bits (582), Expect = 3e-58, Method: Composition-based stats. Identities = 84/156 (53%), Positives = 108/156 (69%), Gaps = 1/156 (0%) Query: 29 ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR- 87 + + + TS D+L WAR SL + FGLACCA+EMM M DLERFG Sbjct: 3 LMQKFDEPNIITTSTDKLFNWARKNSLWPLQFGLACCAIEMMSTGMAHNDLERFGAGFFA 62 Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCD 147 SPRQ+DVMIV+GT++ KMA + R+Y+QMPEP++VI+MG+CA GG + YSV+ G D Sbjct: 63 GSPRQADVMIVSGTVSTKMAERMTRLYEQMPEPKWVIAMGACAISGGPFLDGYSVLMGAD 122 Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 R++PVD+YVPGCPP EALI+GI+ LQKKI R V Sbjct: 123 RVIPVDVYVPGCPPRPEALIFGIMTLQKKIEREQQV 158 >gi|258568476|ref|XP_002584982.1| NADH-ubiquinone oxidoreductase 19.3 kDa subunit [Uncinocarpus reesii 1704] gi|237906428|gb|EEP80829.1| NADH-ubiquinone oxidoreductase 19.3 kDa subunit [Uncinocarpus reesii 1704] Length = 176 Score = 228 bits (581), Expect = 3e-58, Method: Composition-based stats. Identities = 110/168 (65%), Positives = 124/168 (73%), Gaps = 3/168 (1%) Query: 20 EKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDL 79 + + F +T++DQ+ WAR SL MTFGLACCAVEMM S PRYD Sbjct: 4 PRREVPLPSQEKREGAMQFALTTLDQVANWARQSSLWPMTFGLACCAVEMMHLSTPRYDQ 63 Query: 80 ERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS 139 +R G RASPRQSDVMIVAGTLTNKMA ALR+VYDQMP+PR+VISMGSCANGGGYYHYS Sbjct: 64 DRLGIIFRASPRQSDVMIVAGTLTNKMAPALRQVYDQMPDPRWVISMGSCANGGGYYHYS 123 Query: 140 YSVVRGCDRIVPVDIYVPGC---PPTAEALIYGILLLQKKIRRVGNVK 184 YSV RGCDRIVPVDIYVPG PPT+EAL+YGI LQKK+R + Sbjct: 124 YSVTRGCDRIVPVDIYVPGSLKGPPTSEALMYGIFQLQKKMRHTQITR 171 >gi|251799771|ref|YP_003014502.1| NADH dehydrogenase subunit B [Paenibacillus sp. JDR-2] gi|247547397|gb|ACT04416.1| NADH-quinone oxidoreductase, B subunit [Paenibacillus sp. JDR-2] Length = 172 Score = 228 bits (581), Expect = 3e-58, Method: Composition-based stats. Identities = 88/149 (59%), Positives = 110/149 (73%) Query: 30 SSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS 89 + + + +++QL WAR+ SL +TFGLACCA+EMM YDL+RFG R S Sbjct: 12 ERKELERNVFMGTLEQLKAWARSNSLWPLTFGLACCAIEMMGTGASHYDLDRFGVMFRTS 71 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQSDVMIVAGT+T KM LRR+YDQMPEP++VI+MGSCA GG Y SY+V++G D+I Sbjct: 72 PRQSDVMIVAGTVTKKMGPLLRRLYDQMPEPKWVIAMGSCATAGGPYIKSYAVMKGVDQI 131 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIR 178 VPVD+Y+PGCPP ALIYGI LQ+KIR Sbjct: 132 VPVDVYIPGCPPNPAALIYGINKLQEKIR 160 >gi|254883413|ref|ZP_05256123.1| NADH-quinone oxidoreductase [Bacteroides sp. 4_3_47FAA] gi|254836206|gb|EET16515.1| NADH-quinone oxidoreductase [Bacteroides sp. 4_3_47FAA] Length = 205 Score = 228 bits (581), Expect = 3e-58, Method: Composition-based stats. Identities = 76/161 (47%), Positives = 110/161 (68%), Gaps = 3/161 (1%) Query: 21 KVDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78 K + + ++ G LV +D L+ W R+ SL +TF +CC +E M RYD Sbjct: 24 KDNEYLENMVKQLNEGGTKVLVGCLDDLINWGRSNSLWPLTFATSCCGIEFMAVGAARYD 83 Query: 79 LERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137 RFGF RASPRQ+D+++VAGT+T+KMA L+R+YDQM +P+YVI++G CA GG + Sbjct: 84 FARFGFEVARASPRQADMIMVAGTITHKMAPVLKRLYDQMADPKYVIAVGGCAISGGPFK 143 Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 SY V+ G D+I+PVD+Y+PGCPP EAL+YG++ LQ+K++ Sbjct: 144 KSYHVLNGVDKILPVDVYIPGCPPRPEALLYGMIQLQRKVK 184 >gi|21673597|ref|NP_661662.1| NADH dehydrogenase I, 20 kDa subunit [Chlorobium tepidum TLS] gi|81791547|sp|Q8KEC2|NUOB_CHLTE RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|21646711|gb|AAM72004.1| NADH dehydrogenase I, 20 kdA subunit [Chlorobium tepidum TLS] Length = 189 Score = 228 bits (581), Expect = 3e-58, Method: Composition-based stats. Identities = 92/154 (59%), Positives = 118/154 (76%), Gaps = 1/154 (0%) Query: 29 ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88 + + I+++ LVTSVD ++ WAR SL M FGLACCA+EMM + YDLERFG PR+ Sbjct: 4 LDARISNRNVLVTSVDNVMNWARLSSLWPMGFGLACCAIEMMATNASNYDLERFGIFPRS 63 Query: 89 SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGCD 147 SPRQSD+MIVAGT+T KMA + +Y+QMPEPRYV+SMGSC+N GG Y H+ Y V++G D Sbjct: 64 SPRQSDLMIVAGTVTMKMAERVVTLYEQMPEPRYVLSMGSCSNSGGPYWHHGYHVLKGVD 123 Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181 RI+PVD+YVPGCPP EALI G++ +Q+ IR G Sbjct: 124 RIIPVDVYVPGCPPRPEALIGGLMKIQELIRMEG 157 >gi|224178049|ref|YP_002600947.1| 27 kDa subunit of NADH-ubiquinone oxidoreductase [Pyramimonas parkeae] gi|215882716|gb|ACJ71089.1| 27 kDa subunit of NADH-ubiquinone oxidoreductase [Pyramimonas parkeae] Length = 232 Score = 228 bits (581), Expect = 3e-58, Method: Composition-based stats. Identities = 70/164 (42%), Positives = 112/164 (68%), Gaps = 2/164 (1%) Query: 21 KVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLE 80 K + S+++ +++ + T+++ L WAR SL + +G +CC +E R+D + Sbjct: 8 KNSLESSKVTEDLS-TNVIFTTLNDLHNWARLSSLWPLLYGTSCCFIEFASLIGSRFDFD 66 Query: 81 RFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YS 139 RFG PR+SPRQ+D++I AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + S Sbjct: 67 RFGLVPRSSPRQADLIITAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDS 126 Query: 140 YSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 Y+ VRG D+++PVD+Y+PGCPP EA+I ++ L+KK+ + + Sbjct: 127 YTTVRGVDKLIPVDVYLPGCPPKPEAIIDAVIKLRKKVSQEERI 170 >gi|150004312|ref|YP_001299056.1| NADH dehydrogenase subunit B [Bacteroides vulgatus ATCC 8482] gi|294776877|ref|ZP_06742340.1| NADH-quinone oxidoreductase, B subunit [Bacteroides vulgatus PC510] gi|319644247|ref|ZP_07998760.1| NADH dehydrogenase subunit I B [Bacteroides sp. 3_1_40A] gi|238065064|sp|A6L170|NUOB_BACV8 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|149932736|gb|ABR39434.1| NADH dehydrogenase I chain B [Bacteroides vulgatus ATCC 8482] gi|294449353|gb|EFG17890.1| NADH-quinone oxidoreductase, B subunit [Bacteroides vulgatus PC510] gi|317384238|gb|EFV65210.1| NADH dehydrogenase subunit I B [Bacteroides sp. 3_1_40A] Length = 198 Score = 228 bits (581), Expect = 3e-58, Method: Composition-based stats. Identities = 76/161 (47%), Positives = 110/161 (68%), Gaps = 3/161 (1%) Query: 21 KVDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78 K + + ++ G LV +D L+ W R+ SL +TF +CC +E M RYD Sbjct: 17 KDNEYLENMVKQLNEGGTKVLVGCLDDLINWGRSNSLWPLTFATSCCGIEFMAVGAARYD 76 Query: 79 LERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137 RFGF RASPRQ+D+++VAGT+T+KMA L+R+YDQM +P+YVI++G CA GG + Sbjct: 77 FARFGFEVARASPRQADMIMVAGTITHKMAPVLKRLYDQMADPKYVIAVGGCAISGGPFK 136 Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 SY V+ G D+I+PVD+Y+PGCPP EAL+YG++ LQ+K++ Sbjct: 137 KSYHVLNGVDKILPVDVYIPGCPPRPEALLYGMIQLQRKVK 177 >gi|110636931|ref|YP_677138.1| NADH:ubiquinone oxidoreductase [Cytophaga hutchinsonii ATCC 33406] gi|110279612|gb|ABG57798.1| NADH dehydrogenase subunit B [Cytophaga hutchinsonii ATCC 33406] Length = 184 Score = 228 bits (581), Expect = 3e-58, Method: Composition-based stats. Identities = 97/161 (60%), Positives = 116/161 (72%), Gaps = 1/161 (0%) Query: 21 KVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLE 80 K S + + G +V+ ++ ++ WAR SL M+FGLACCA+EMMQ YDL+ Sbjct: 2 KNQTFMSLLDHKFGQGGIVVSQLEDVLNWARLSSLFPMSFGLACCAIEMMQTFTSGYDLD 61 Query: 81 RFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-S 139 RFG PR SPRQSDVMIVAGT+T KMA +RR+Y+QMPEPRYVISMGSC+N GG Y Sbjct: 62 RFGVIPRPSPRQSDVMIVAGTVTFKMADRIRRLYEQMPEPRYVISMGSCSNCGGPYWEHG 121 Query: 140 YSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 Y VV+G DRIVPVDIYVPGCPP EALI G L LQ+KIR+ Sbjct: 122 YHVVKGVDRIVPVDIYVPGCPPRPEALIGGFLKLQEKIRKE 162 >gi|34501411|ref|NP_904198.1| NADH dehydrogenase subunit K [Physcomitrella patens subsp. patens] gi|75294073|sp|Q6YXQ9|NDHK_PHYPA RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K gi|34494781|dbj|BAC85048.1| NADH dehydrogenase 27 kD subunit [Physcomitrella patens subsp. patens] Length = 261 Score = 228 bits (581), Expect = 3e-58, Method: Composition-based stats. Identities = 73/181 (40%), Positives = 113/181 (62%), Gaps = 1/181 (0%) Query: 1 MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTF 60 M L + + ++ +++ S++ ++T+ + WAR SL + + Sbjct: 1 MVLNSNYDNYKNKITNSMKPLINSVNPAFSNQENPNSVILTTFNDFTNWARLSSLWPLLY 60 Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 G +CC +E R+D +R+G PR+SPRQ+D++I AGT+T KMA +L R+Y+QMPEP Sbjct: 61 GTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLIITAGTVTMKMAPSLVRLYEQMPEP 120 Query: 121 RYVISMGSCANGGGYYH-YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179 +YVI+MG+C GG + SYS VRG D+++PVDIY+PGCPP EA+I I+ L+KKI + Sbjct: 121 KYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDIYLPGCPPKPEAIIDAIIKLRKKIAQ 180 Query: 180 V 180 Sbjct: 181 E 181 >gi|89895333|ref|YP_518820.1| NADH dehydrogenase I chain B [Desulfitobacterium hafniense Y51] gi|219669767|ref|YP_002460202.1| NADH dehydrogenase subunit B [Desulfitobacterium hafniense DCB-2] gi|122482325|sp|Q24UB6|NUOB_DESHY RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|238065122|sp|B8FRK6|NUOB_DESHD RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|89334781|dbj|BAE84376.1| NADH dehydrogenase I chain B [Desulfitobacterium hafniense Y51] gi|219540027|gb|ACL21766.1| NADH-quinone oxidoreductase, B subunit [Desulfitobacterium hafniense DCB-2] Length = 173 Score = 228 bits (581), Expect = 4e-58, Method: Composition-based stats. Identities = 87/158 (55%), Positives = 115/158 (72%), Gaps = 1/158 (0%) Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-P 86 R + + K L+TS+D+++ W R S +TFGLACCA+EMM A PR D+ RFG+ Sbjct: 10 REAEALMEKNVLLTSIDKVLNWGRGHSFWPVTFGLACCAIEMMAAGGPRVDISRFGYEVF 69 Query: 87 RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGC 146 RASPR +DVMIVAGT T KMA LR +YDQMPEP++VI+MGSCA+ GG + SYS++ G Sbjct: 70 RASPRHADVMIVAGTCTRKMAPLLRMIYDQMPEPKWVIAMGSCASAGGPFADSYSMLTGV 129 Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 D+IVPVD+Y+PGCPP E+L+YG+L LQ K+ V+ Sbjct: 130 DKIVPVDVYIPGCPPRPESLVYGLLQLQHKVNHPDKVR 167 >gi|260592325|ref|ZP_05857783.1| NADH dehydrogenase I, B subunit [Prevotella veroralis F0319] gi|260535712|gb|EEX18329.1| NADH dehydrogenase I, B subunit [Prevotella veroralis F0319] Length = 295 Score = 227 bits (580), Expect = 4e-58, Method: Composition-based stats. Identities = 79/161 (49%), Positives = 115/161 (71%), Gaps = 3/161 (1%) Query: 21 KVDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78 K + S+++SE+ G ++ ++DQL+ W R+ SL +TF +CC +E M RYD Sbjct: 17 KDNDTLSKMASELNDGGTNLVLGNLDQLINWGRSNSLWSLTFATSCCGIEFMAVGCARYD 76 Query: 79 LERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137 RFGF R SPRQ+D+++ AGT+TNKMA AL+R+YD+M EP+YVI++G CA GG + Sbjct: 77 FSRFGFEVTRNSPRQADLIMCAGTITNKMAPALKRLYDEMAEPKYVIAVGGCAISGGPFK 136 Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 SY V+RG D I+PVD+Y+PGCPP EA+IYG++ LQ+K++ Sbjct: 137 DSYHVMRGIDEIIPVDVYIPGCPPRPEAIIYGMMQLQRKVK 177 >gi|295697744|ref|YP_003590982.1| NADH-quinone oxidoreductase, B subunit [Bacillus tusciae DSM 2912] gi|295413346|gb|ADG07838.1| NADH-quinone oxidoreductase, B subunit [Bacillus tusciae DSM 2912] Length = 183 Score = 227 bits (580), Expect = 4e-58, Method: Composition-based stats. Identities = 92/179 (51%), Positives = 124/179 (69%) Query: 6 VNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACC 65 + + G + + S+++T G LV++++QL WAR+ SL +TFGLACC Sbjct: 1 MEMNPVPGSRPAGRVEFEGFSDEESADLTRAGVLVSTIEQLKAWARSNSLWPLTFGLACC 60 Query: 66 AVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVIS 125 A+EMM YDL+RFG RASPRQSDVMIVAGT+T KM LRR+YDQMP+P++V++ Sbjct: 61 AIEMMGTGASHYDLDRFGIIFRASPRQSDVMIVAGTVTKKMGPLLRRLYDQMPDPKWVVA 120 Query: 126 MGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 MGSCA GG Y SY+V++G D++VPVD+Y+PGCPP+ ALIYG+ LQ+KIR K Sbjct: 121 MGSCATAGGPYVRSYAVMKGVDQVVPVDVYIPGCPPSPPALIYGLNKLQEKIRMEARRK 179 >gi|119511864|ref|ZP_01630964.1| NADH dehydrogenase beta subunit [Nodularia spumigena CCY9414] gi|119463506|gb|EAW44443.1| NADH dehydrogenase beta subunit [Nodularia spumigena CCY9414] Length = 246 Score = 227 bits (580), Expect = 4e-58, Method: Composition-based stats. Identities = 77/173 (44%), Positives = 113/173 (65%), Gaps = 4/173 (2%) Query: 6 VNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACC 65 +N K+ S + ++ I+ +++ ++T+VD L WAR SL + FG ACC Sbjct: 3 LNSKLTSPDKEQIINPIER--PAITQDLSE-NVILTTVDDLYNWARLSSLWPLLFGTACC 59 Query: 66 AVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVIS 125 +E R+D +RFG PR+SPRQ+D++I AGT+T KMA L R+Y+QMPEP+YVI+ Sbjct: 60 FIEFAALIGSRFDFDRFGLIPRSSPRQADLIITAGTITMKMAPQLVRLYEQMPEPKYVIA 119 Query: 126 MGSCANGGGYYH-YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 MG+C GG + S + VRG D+++PVD+Y+PGCPP EA+I I+ L+KKI Sbjct: 120 MGACTITGGMFSMDSPTAVRGVDKLIPVDVYLPGCPPRPEAIIDAIIKLRKKI 172 >gi|281419772|ref|ZP_06250771.1| NADH-quinone oxidoreductase chain B [Prevotella copri DSM 18205] gi|281406148|gb|EFB36828.1| NADH-quinone oxidoreductase chain B [Prevotella copri DSM 18205] Length = 241 Score = 227 bits (580), Expect = 4e-58, Method: Composition-based stats. Identities = 76/176 (43%), Positives = 113/176 (64%), Gaps = 3/176 (1%) Query: 6 VNQKIISGQSSCSLEKVDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLA 63 VN++ K + +I+ E+ G +V S+D + W R+ SL +TFG + Sbjct: 3 VNKRASIKSIPYDEFKDNDTLEKIAQELNEGGANVVVGSLDAAINWGRSNSLWSLTFGTS 62 Query: 64 CCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122 CC +E M RYD RFGF R SPRQ+D+++ AGT+TNKMA +R+YD+M EP+Y Sbjct: 63 CCGIEFMAVGCARYDFSRFGFEVTRNSPRQADLIMCAGTITNKMAPVFKRLYDEMAEPKY 122 Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 V+++G C GG + SY+VVRG +VPVD+Y+PGCPP EA++YG++ LQ+K++ Sbjct: 123 VVAVGGCTISGGPFKKSYNVVRGISELVPVDVYIPGCPPRPEAILYGMMQLQRKVK 178 >gi|282877800|ref|ZP_06286613.1| NADH-quinone oxidoreductase, B subunit [Prevotella buccalis ATCC 35310] gi|281300116|gb|EFA92472.1| NADH-quinone oxidoreductase, B subunit [Prevotella buccalis ATCC 35310] Length = 231 Score = 227 bits (580), Expect = 4e-58, Method: Composition-based stats. Identities = 81/161 (50%), Positives = 109/161 (67%), Gaps = 3/161 (1%) Query: 21 KVDADFSRISSEITHKGF--LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78 K + RI E+ G + S+DQL+ W R SL +TF +CC +E M RYD Sbjct: 17 KDNESLERIVDELHEGGVNVVTGSLDQLINWGRANSLWSLTFATSCCGIEFMAVGCARYD 76 Query: 79 LERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137 RFGF R SPRQ+D+++ AGT+TNKMA A RR+YD+M EP+YVI++G CA GG + Sbjct: 77 FARFGFEVTRNSPRQADLIMCAGTITNKMAPAFRRLYDEMAEPKYVIAVGGCAISGGPFK 136 Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 SY VVRG D IVPVD+++PGCPP EA++YG++ LQ+KI+ Sbjct: 137 SSYHVVRGIDEIVPVDVFIPGCPPRPEAIMYGMMQLQRKIK 177 >gi|313156901|gb|EFR56339.1| NADH-quinone oxidoreductase, B subunit [Alistipes sp. HGB5] Length = 218 Score = 227 bits (580), Expect = 5e-58, Method: Composition-based stats. Identities = 75/160 (46%), Positives = 111/160 (69%), Gaps = 3/160 (1%) Query: 22 VDADFSRISSEI--THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDL 79 + ++ +E+ + +V +D+L+ W R+ SL +TF +CC +E M RYD Sbjct: 19 DNEYLEKMVAELRDNNTNVIVGCLDELIEWGRSNSLWPLTFATSCCGIEFMAVGAARYDF 78 Query: 80 ERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY 138 RFGF RASPRQ+D ++VAGT+T+KMA LRR+YDQM +P+YVI++G CA GG + Sbjct: 79 ARFGFEVARASPRQADFIMVAGTITHKMAPVLRRLYDQMADPKYVIAVGGCAISGGPFKK 138 Query: 139 SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 SY V+ G DRI+PVD+Y+PGCPP EA++YG++ LQ+K++ Sbjct: 139 SYHVLNGVDRILPVDVYIPGCPPRPEAMLYGLMQLQRKVK 178 >gi|307566084|ref|ZP_07628542.1| NADH-quinone oxidoreductase, B subunit [Prevotella amnii CRIS 21A-A] gi|307345272|gb|EFN90651.1| NADH-quinone oxidoreductase, B subunit [Prevotella amnii CRIS 21A-A] Length = 289 Score = 227 bits (580), Expect = 5e-58, Method: Composition-based stats. Identities = 76/161 (47%), Positives = 114/161 (70%), Gaps = 3/161 (1%) Query: 21 KVDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78 K + ++++++ G ++ ++DQL+ W R+ SL +TF +CC +E M RYD Sbjct: 17 KDNDTLDKMAADLNDGGTNLVLGNLDQLINWGRSNSLWSLTFATSCCGIEFMSVGCARYD 76 Query: 79 LERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137 RFGF R SPRQ+D+++ AGT+TNKMA AL+R+YD+M EP+YVI++G CA GG + Sbjct: 77 FSRFGFEVTRNSPRQADLIMCAGTITNKMAPALKRLYDEMAEPKYVIAVGGCAISGGPFK 136 Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 SY V+RG D I+PVD+Y+PGCPP EA+IYG++ LQ+K++ Sbjct: 137 NSYHVMRGIDEIIPVDVYIPGCPPRPEAIIYGMMQLQRKVK 177 >gi|258592356|emb|CBE68665.1| NADH-quinone oxidoreductase subunit 6 (NADH dehydrogenase I chain 6) (NDH-1 subunit 6) [NC10 bacterium 'Dutch sediment'] Length = 181 Score = 227 bits (580), Expect = 5e-58, Method: Composition-based stats. Identities = 86/158 (54%), Positives = 117/158 (74%), Gaps = 2/158 (1%) Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-P 86 + + +G L+T++D LV WAR S+ +FGLACCA+EMM R+DL RFG Sbjct: 13 KEEEQEFERGLLLTTLDSLVNWARKSSIWPASFGLACCAIEMMATGASRFDLARFGAEVF 72 Query: 87 RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGC 146 R SPRQSD+MIVAG ++ KMA LRR+YDQMPEP++VI+MG+CA+ GG ++ +Y++V+G Sbjct: 73 RGSPRQSDLMIVAGRVSRKMAPVLRRIYDQMPEPKWVIAMGACASCGGIFN-TYTIVQGV 131 Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 D+IVPVD+YVPGCPP E LI+GI+LLQ+KI + K Sbjct: 132 DQIVPVDVYVPGCPPRPEQLIHGIMLLQEKIAKERPSK 169 >gi|282881432|ref|ZP_06290106.1| NADH-quinone oxidoreductase, B subunit [Prevotella timonensis CRIS 5C-B1] gi|281304658|gb|EFA96744.1| NADH-quinone oxidoreductase, B subunit [Prevotella timonensis CRIS 5C-B1] Length = 231 Score = 227 bits (579), Expect = 5e-58, Method: Composition-based stats. Identities = 81/161 (50%), Positives = 109/161 (67%), Gaps = 3/161 (1%) Query: 21 KVDADFSRISSEITHKGF--LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78 K + RI E+ G + S+DQL+ W R SL +TF +CC +E M RYD Sbjct: 17 KDNESLERIVDELHEGGVNVVTGSLDQLINWGRANSLWSLTFATSCCGIEFMAVGCARYD 76 Query: 79 LERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137 RFGF R SPRQ+D+++ AGT+TNKMA A RR+YD+M EP+YVI++G CA GG + Sbjct: 77 FARFGFEVTRNSPRQADLIMCAGTITNKMAPAFRRLYDEMAEPKYVIAVGGCAISGGPFK 136 Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 SY VVRG D IVPVD+++PGCPP EA++YG++ LQ+KI+ Sbjct: 137 SSYHVVRGIDEIVPVDVFIPGCPPRPEAIMYGMMQLQRKIK 177 >gi|219848534|ref|YP_002462967.1| NADH dehydrogenase subunit B [Chloroflexus aggregans DSM 9485] gi|238065029|sp|B8GA16|NUOB2_CHLAD RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName: Full=NADH dehydrogenase I subunit B 2; AltName: Full=NDH-1 subunit B 2 gi|219542793|gb|ACL24531.1| NADH-quinone oxidoreductase, B subunit [Chloroflexus aggregans DSM 9485] Length = 264 Score = 227 bits (579), Expect = 5e-58, Method: Composition-based stats. Identities = 83/159 (52%), Positives = 112/159 (70%), Gaps = 1/159 (0%) Query: 24 ADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFG 83 AD E+ +G L+T+V++ W R S+ M FGLACCA+EMM + RYD+ RFG Sbjct: 2 ADIDPNQLELERQGILLTTVNRFYNWGRRSSIWPMAFGLACCAIEMMAFGLSRYDVARFG 61 Query: 84 F-APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142 RASPRQ+D+MIVAGT+T KMA + R+Y+QM EPRYVISMG+CA GG + Y+V Sbjct: 62 AELFRASPRQADLMIVAGTVTKKMAPQVVRLYNQMAEPRYVISMGACATSGGPFRDGYNV 121 Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181 +RG D ++PVD+YVPGCPP EAL++ ++ LQ++I R Sbjct: 122 LRGIDLLIPVDVYVPGCPPRPEALLHALMTLQEQIDRQK 160 >gi|317130743|ref|YP_004097025.1| NADH-quinone oxidoreductase subunit beta [Bacillus cellulosilyticus DSM 2522] gi|315475691|gb|ADU32294.1| NADH-quinone oxidoreductase, B subunit [Bacillus cellulosilyticus DSM 2522] Length = 175 Score = 227 bits (579), Expect = 6e-58, Method: Composition-based stats. Identities = 92/160 (57%), Positives = 113/160 (70%) Query: 21 KVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLE 80 K + E + T V+QL W+RT SL ++FGLACCA+EMM RYD + Sbjct: 7 KDTEQYDPRILEDIKRNVFFTKVEQLKAWSRTRSLWPLSFGLACCAIEMMGTGAARYDFD 66 Query: 81 RFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSY 140 RFG RASPR SDVMIVAGT+T+KMA LR +YDQMPEP++VISMGSCA GG Y +Y Sbjct: 67 RFGVIFRASPRHSDVMIVAGTVTSKMAPVLRTLYDQMPEPKWVISMGSCATCGGPYKEAY 126 Query: 141 SVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 SVV G D++VPVD+YVPGCPPT AL+ G+ LL++KIRR Sbjct: 127 SVVNGVDKVVPVDVYVPGCPPTPPALLDGVDLLREKIRRE 166 >gi|89095634|ref|ZP_01168528.1| NADH dehydrogenase subunit B [Bacillus sp. NRRL B-14911] gi|89089380|gb|EAR68487.1| NADH dehydrogenase subunit B [Bacillus sp. NRRL B-14911] Length = 177 Score = 227 bits (578), Expect = 7e-58, Method: Composition-based stats. Identities = 91/161 (56%), Positives = 116/161 (72%), Gaps = 3/161 (1%) Query: 21 KVDADFSRISSEI---THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRY 77 ++D I+ E + + +++Q+ WAR+ SL MTFGLACCA+EMM Y Sbjct: 7 QMDLKLENITPEEMQELQRNVFMATLEQIKAWARSNSLWPMTFGLACCAIEMMGVGSSHY 66 Query: 78 DLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137 DL+RFG R SPRQSDVMIV+GT+T KMA +RR+YDQMPEP++VI+MGSCA GG Y Sbjct: 67 DLDRFGSFFRTSPRQSDVMIVSGTVTKKMAPIVRRLYDQMPEPKWVIAMGSCATAGGPYV 126 Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 SYSVV+G D+IVPVD+Y+PGCPP ALIYGI L++KIR Sbjct: 127 KSYSVVKGVDQIVPVDVYIPGCPPNPAALIYGINKLKEKIR 167 >gi|194333676|ref|YP_002015536.1| NADH dehydrogenase subunit B [Prosthecochloris aestuarii DSM 271] gi|238065190|sp|B4S752|NUOB_PROA2 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|194311494|gb|ACF45889.1| NADH-quinone oxidoreductase, B subunit [Prosthecochloris aestuarii DSM 271] Length = 190 Score = 227 bits (578), Expect = 7e-58, Method: Composition-based stats. Identities = 91/151 (60%), Positives = 117/151 (77%), Gaps = 1/151 (0%) Query: 29 ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88 + ++I++ LVTSVD ++ WAR SL M FGLACCA+EMM + YDLERFG PR+ Sbjct: 4 LDAKISNHNVLVTSVDNVLNWARLSSLWPMGFGLACCAIEMMATNASNYDLERFGIFPRS 63 Query: 89 SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGCD 147 SPRQSD+MIVAGT+T KMA + R+Y+QMPEPRYV+SMGSC+N GG Y + Y V++G D Sbjct: 64 SPRQSDLMIVAGTVTMKMAERVIRLYEQMPEPRYVLSMGSCSNCGGPYWKHGYHVLKGVD 123 Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 RI+PVD+YVPGCPP EALI G++ +Q+ IR Sbjct: 124 RIIPVDVYVPGCPPRPEALIGGLMKVQELIR 154 >gi|167752198|ref|ZP_02424325.1| hypothetical protein ALIPUT_00440 [Alistipes putredinis DSM 17216] gi|167660439|gb|EDS04569.1| hypothetical protein ALIPUT_00440 [Alistipes putredinis DSM 17216] Length = 219 Score = 227 bits (578), Expect = 7e-58, Method: Composition-based stats. Identities = 75/160 (46%), Positives = 110/160 (68%), Gaps = 3/160 (1%) Query: 22 VDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDL 79 + ++ E+ G ++ +D+++ W R+ SL +TF +CC +E M RYD Sbjct: 18 DNEYLEKMIEELRANGTNVVMGCLDEVINWGRSNSLWPLTFATSCCGIEFMAVGAARYDF 77 Query: 80 ERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY 138 RFGF RASPRQ+D ++VAGT+T+KMA LRR+YDQM +P+YVI+ GSCA GG + Sbjct: 78 ARFGFEVARASPRQADFIMVAGTITHKMAPVLRRLYDQMADPKYVIATGSCAVSGGPFKK 137 Query: 139 SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 SY VV G D+I+PVD+Y+PGCPP EA++YG++ LQ+K++ Sbjct: 138 SYHVVNGVDKILPVDVYIPGCPPRPEAMLYGMMQLQRKVK 177 >gi|16126198|ref|NP_420762.1| NADH dehydrogenase subunit B [Caulobacter crescentus CB15] gi|81621086|sp|Q9A6X1|NUOB_CAUCR RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|13423414|gb|AAK23930.1| NADH dehydrogenase I, B subunit [Caulobacter crescentus CB15] Length = 193 Score = 227 bits (578), Expect = 7e-58, Method: Composition-based stats. Identities = 133/162 (82%), Positives = 147/162 (90%) Query: 23 DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82 D F +S ++ KGF+ + D L+TWARTGSLMWMTFGLACCAVEMMQASMPRYDLER+ Sbjct: 31 DPFFDGVSQQLADKGFITAAADDLITWARTGSLMWMTFGLACCAVEMMQASMPRYDLERY 90 Query: 83 GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142 GFAPRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYY+YSYSV Sbjct: 91 GFAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYYYSYSV 150 Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 VRGCDR+VPVDIYVPGCPPTAEAL+YG+L LQKKIRR G ++ Sbjct: 151 VRGCDRVVPVDIYVPGCPPTAEALVYGVLQLQKKIRRTGTIE 192 >gi|311033318|ref|ZP_07711408.1| NADH dehydrogenase subunit B [Bacillus sp. m3-13] Length = 170 Score = 227 bits (578), Expect = 7e-58, Method: Composition-based stats. Identities = 88/153 (57%), Positives = 112/153 (73%) Query: 26 FSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA 85 S E + +T++++L WAR+ S+ MTFGLACCA+EMM YDL+RFG Sbjct: 8 ISPEEMEELKQTVFLTTLEELKAWARSNSMWPMTFGLACCAIEMMGVGSSHYDLDRFGSF 67 Query: 86 PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRG 145 R SPRQSD MIV+GT+T KMA L+R+YDQMPEP++VI+MGSCA GG Y SY+VV+G Sbjct: 68 FRTSPRQSDCMIVSGTVTKKMAPVLKRLYDQMPEPKWVIAMGSCATAGGPYIKSYAVVKG 127 Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 D+IVPVD+Y+PGCPP ALIYGI L++KIR Sbjct: 128 VDQIVPVDVYIPGCPPNPAALIYGINKLREKIR 160 >gi|124006095|ref|ZP_01690931.1| NADH-ubiquinone oxidoreductase 20 kda subunit [Microscilla marina ATCC 23134] gi|123988272|gb|EAY27925.1| NADH-ubiquinone oxidoreductase 20 kda subunit [Microscilla marina ATCC 23134] Length = 174 Score = 227 bits (578), Expect = 7e-58, Method: Composition-based stats. Identities = 89/154 (57%), Positives = 109/154 (70%), Gaps = 1/154 (0%) Query: 29 ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88 + + ++T + L+ WAR SL M FGLACCA+EMM YDL+RFG PRA Sbjct: 4 LDQQFEQDNIILTKAEDLINWARLSSLWPMGFGLACCAIEMMSTFAAGYDLDRFGVFPRA 63 Query: 89 SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCD 147 SPRQSDVMIVAGT+T KMA ++R+Y+QM EPRYVISMGSC+N GG Y Y VV+G D Sbjct: 64 SPRQSDVMIVAGTVTFKMADRIKRLYEQMAEPRYVISMGSCSNCGGPYWEHGYHVVKGVD 123 Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181 RI+PVD+YVPGCPP EALI G + LQ+K+R Sbjct: 124 RIIPVDVYVPGCPPRPEALIGGFMKLQEKVRNER 157 >gi|217424871|ref|ZP_03456368.1| putative NADH-quinone oxidoreductase, B subunit [Burkholderia pseudomallei 576] gi|217392327|gb|EEC32352.1| putative NADH-quinone oxidoreductase, B subunit [Burkholderia pseudomallei 576] Length = 264 Score = 227 bits (578), Expect = 7e-58, Method: Composition-based stats. Identities = 107/151 (70%), Positives = 126/151 (83%) Query: 32 EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPR 91 + GF+VT++D + A+ SL +MTFGLACCAVEMM A+ RYD++RFG PRASPR Sbjct: 104 TLEKDGFIVTTLDAAMAAAQKNSLWYMTFGLACCAVEMMHAAGARYDMDRFGMIPRASPR 163 Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151 Q D+MIVAGTLTNKMA A+RRVYDQM EPRYV+SMGSCANGGGYYHYSYSVVRGCDRIVP Sbjct: 164 QCDLMIVAGTLTNKMAPAMRRVYDQMAEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVP 223 Query: 152 VDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182 VD+YVPGCPPTAEAL+YG++ LQ+K+ Sbjct: 224 VDVYVPGCPPTAEALVYGLMQLQRKVAERST 254 >gi|223931071|ref|YP_002586932.1| NADH-plastoquinone oxidoreductase subunit K [Syntrichia ruralis] gi|219562285|gb|ACL27616.1| NADH-plastoquinone oxidoreductase subunit K [Syntrichia ruralis] Length = 249 Score = 227 bits (578), Expect = 7e-58, Method: Composition-based stats. Identities = 70/156 (44%), Positives = 106/156 (67%), Gaps = 1/156 (0%) Query: 26 FSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA 85 + +S++ ++T+ + WAR SL + +G +CC +E R+D +R+G Sbjct: 22 INSLSNQKNPNSIILTTFNDFSNWARLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLV 81 Query: 86 PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVR 144 PR+SPRQ+D++I AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VR Sbjct: 82 PRSSPRQADLIITAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVR 141 Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 G D+++PVDIY+PGCPP EA+I I+ L+KK+ + Sbjct: 142 GVDKLIPVDIYLPGCPPKPEAIIDAIIKLRKKVAQE 177 >gi|294661316|ref|YP_003573192.1| hypothetical protein Aasi_1809 [Candidatus Amoebophilus asiaticus 5a2] gi|227336467|gb|ACP21064.1| hypothetical protein Aasi_1809 [Candidatus Amoebophilus asiaticus 5a2] Length = 173 Score = 227 bits (578), Expect = 8e-58, Method: Composition-based stats. Identities = 93/161 (57%), Positives = 119/161 (73%), Gaps = 1/161 (0%) Query: 19 LEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78 + +++ IS++ G ++ +++ L+ WA SL +TFGLACCA+EMM A YD Sbjct: 7 INQINNYMDTISNKTGEGGVIMVALEDLLNWAERSSLWPITFGLACCAIEMMGAYASHYD 66 Query: 79 LERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY 138 L+R G PR SPRQ+DVMIV+GT+T KMA ++RR+YDQMPEPRYVISMGSCAN GG Y Sbjct: 67 LDRLGVIPRNSPRQADVMIVSGTVTFKMADSIRRLYDQMPEPRYVISMGSCANCGGPYWQ 126 Query: 139 -SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 Y VV+G DRI+PVD+YVPGCPP EALI GIL LQ+KI+ Sbjct: 127 HGYHVVKGVDRIIPVDVYVPGCPPRPEALIGGILKLQEKIK 167 >gi|95928442|ref|ZP_01311190.1| NADH-quinone oxidoreductase, B subunit [Desulfuromonas acetoxidans DSM 684] gi|95135713|gb|EAT17364.1| NADH-quinone oxidoreductase, B subunit [Desulfuromonas acetoxidans DSM 684] Length = 179 Score = 227 bits (578), Expect = 8e-58, Method: Composition-based stats. Identities = 79/150 (52%), Positives = 112/150 (74%), Gaps = 1/150 (0%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 + + S+D++V W+R+ SL MTFGLACCA+EMM R+DL+R G RASPRQ Sbjct: 17 VLGNNIMTASLDKVVNWSRSRSLWPMTFGLACCAIEMMATGAARFDLDRMGVLFRASPRQ 76 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 +DV+I+AGT+T+KM + VY+QMPEP+YVI+MG+CA+ GG + +YSV++G D+ +PV Sbjct: 77 ADVIIIAGTVTHKMLPVIETVYEQMPEPKYVIAMGACASSGGVF-DTYSVLQGIDQALPV 135 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGN 182 D+Y+PGCPP E L+YG++ LQ+KI R N Sbjct: 136 DVYIPGCPPRPEGLLYGLMKLQEKIMRERN 165 >gi|172072907|ref|YP_001806668.1| NADH dehydrogenase subunit K [Cryptomeria japonica] gi|171854926|dbj|BAG16666.1| NADH-plastoquinone oxidoreductase subunit K [Cryptomeria japonica] gi|239794295|dbj|BAH73292.1| NADH-plastoquinone oxidoreductase subunit K [Cryptomeria japonica] gi|239794377|dbj|BAH73373.1| NADH-plastoquinone oxidoreductase subunit K [Cryptomeria japonica] Length = 268 Score = 227 bits (578), Expect = 8e-58, Method: Composition-based stats. Identities = 72/162 (44%), Positives = 108/162 (66%), Gaps = 1/162 (0%) Query: 20 EKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDL 79 ++ S + + T + T+++ L WAR SL + +G +CC +E R+D Sbjct: 29 PAINPIESSLLDQTTSNSVISTTLNDLSNWARLSSLWPLLYGTSCCFIEFASLIGSRFDF 88 Query: 80 ERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-Y 138 +R+G PR+SPRQ+D++I AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + Sbjct: 89 DRYGLVPRSSPRQADLLITAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTD 148 Query: 139 SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 SYS VRG D+++PVDIY+PGCPP EA+I I+ L++KI + Sbjct: 149 SYSTVRGVDKLIPVDIYLPGCPPKPEAIIDAIIKLREKIAQE 190 >gi|221234969|ref|YP_002517405.1| NADH dehydrogenase subunit B [Caulobacter crescentus NA1000] gi|238055282|sp|B8GWV5|NUOB_CAUCN RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|220964141|gb|ACL95497.1| NADH-quinone oxidoreductase chain B [Caulobacter crescentus NA1000] Length = 200 Score = 226 bits (577), Expect = 9e-58, Method: Composition-based stats. Identities = 133/162 (82%), Positives = 147/162 (90%) Query: 23 DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82 D F +S ++ KGF+ + D L+TWARTGSLMWMTFGLACCAVEMMQASMPRYDLER+ Sbjct: 38 DPFFDGVSQQLADKGFITAAADDLITWARTGSLMWMTFGLACCAVEMMQASMPRYDLERY 97 Query: 83 GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142 GFAPRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYY+YSYSV Sbjct: 98 GFAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYYYSYSV 157 Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 VRGCDR+VPVDIYVPGCPPTAEAL+YG+L LQKKIRR G ++ Sbjct: 158 VRGCDRVVPVDIYVPGCPPTAEALVYGVLQLQKKIRRTGTIE 199 >gi|218527891|sp|A2CI36|NDHK_CHLAT RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K Length = 274 Score = 226 bits (577), Expect = 9e-58, Method: Composition-based stats. Identities = 72/172 (41%), Positives = 113/172 (65%), Gaps = 1/172 (0%) Query: 14 QSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQAS 73 Q + K ++ + ++ ++T+++ L WAR SL + +G +CC +E Sbjct: 40 QKRETSGKELSEATPQVTQSLSNQLILTTLNDLYNWARLSSLWPLLYGTSCCFIEFASLL 99 Query: 74 MPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGG 133 R+D +RFG PR+SPRQ+D++I AGT+T KMA +L R+Y+QMPEP+YVI+MG+C G Sbjct: 100 GSRFDFDRFGLVPRSSPRQADLIITAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITG 159 Query: 134 GYYH-YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 G + SYS VRG D+++PVD+Y+PGCPP EA+I ++ L+KK+ + V+ Sbjct: 160 GMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEAIIDAVIKLRKKVAQEDFVE 211 >gi|124112067|ref|YP_001019118.1| 27 kDa subunit of NADH-ubiquinone oxidoreductase [Chlorokybus atmophyticus] gi|124012183|gb|ABM87958.1| 27 kDa subunit of NADH-ubiquinone oxidoreductase [Chlorokybus atmophyticus] Length = 281 Score = 226 bits (577), Expect = 9e-58, Method: Composition-based stats. Identities = 72/172 (41%), Positives = 113/172 (65%), Gaps = 1/172 (0%) Query: 14 QSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQAS 73 Q + K ++ + ++ ++T+++ L WAR SL + +G +CC +E Sbjct: 47 QKRETSGKELSEATPQVTQSLSNQLILTTLNDLYNWARLSSLWPLLYGTSCCFIEFASLL 106 Query: 74 MPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGG 133 R+D +RFG PR+SPRQ+D++I AGT+T KMA +L R+Y+QMPEP+YVI+MG+C G Sbjct: 107 GSRFDFDRFGLVPRSSPRQADLIITAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITG 166 Query: 134 GYYH-YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 G + SYS VRG D+++PVD+Y+PGCPP EA+I ++ L+KK+ + V+ Sbjct: 167 GMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEAIIDAVIKLRKKVAQEDFVE 218 >gi|206889677|ref|YP_002248748.1| NADH-quinone oxidoreductase chain b 2 [Thermodesulfovibrio yellowstonii DSM 11347] gi|238065023|sp|B5YKI3|NUOB1_THEYD RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName: Full=NADH dehydrogenase I subunit B 1; AltName: Full=NDH-1 subunit B 1 gi|206741615|gb|ACI20672.1| NADH-quinone oxidoreductase chain b 2 [Thermodesulfovibrio yellowstonii DSM 11347] Length = 199 Score = 226 bits (577), Expect = 9e-58, Method: Composition-based stats. Identities = 82/162 (50%), Positives = 114/162 (70%), Gaps = 1/162 (0%) Query: 23 DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82 + + + ++T++D++ +W R SL +TFGLACCA+EMM + YDL+RF Sbjct: 11 PVEIEQGIKIVPAANTIITTLDKIASWGRCSSLWPLTFGLACCAIEMMATAASHYDLDRF 70 Query: 83 GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142 G RA+PRQ+DVMI+AGT+T KMA + +Y QMPEPRYVI+MGSCA GG ++ +YS Sbjct: 71 GIIMRATPRQADVMIIAGTVTKKMAPVIVNLYHQMPEPRYVIAMGSCACSGGIFN-TYST 129 Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 V+G D I+PVD+Y+PGCPP EALI G+L LQ+KI+ + K Sbjct: 130 VQGVDEILPVDVYIPGCPPRPEALIEGLLKLQEKIKTEPHKK 171 >gi|163847546|ref|YP_001635590.1| NADH dehydrogenase subunit B [Chloroflexus aurantiacus J-10-fl] gi|222525396|ref|YP_002569867.1| NADH dehydrogenase subunit B [Chloroflexus sp. Y-400-fl] gi|238065006|sp|A9WED9|NUOB1_CHLAA RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName: Full=NADH dehydrogenase I subunit B 1; AltName: Full=NDH-1 subunit B 1 gi|238065008|sp|B9LGT9|NUOB1_CHLSY RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName: Full=NADH dehydrogenase I subunit B 1; AltName: Full=NDH-1 subunit B 1 gi|163668835|gb|ABY35201.1| NADH-quinone oxidoreductase, B subunit [Chloroflexus aurantiacus J-10-fl] gi|222449275|gb|ACM53541.1| NADH-quinone oxidoreductase, B subunit [Chloroflexus sp. Y-400-fl] Length = 264 Score = 226 bits (577), Expect = 9e-58, Method: Composition-based stats. Identities = 82/159 (51%), Positives = 112/159 (70%), Gaps = 1/159 (0%) Query: 24 ADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFG 83 A+ E+ +G L+T+V++ W R S+ M FGLACCA+EMM + RYD+ RFG Sbjct: 2 AEIDPTQLELERQGILLTTVNRFYNWGRRSSIWPMAFGLACCAIEMMAFGLSRYDVARFG 61 Query: 84 F-APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142 RASPRQ+D+MIVAGT+T KMA + R+Y+QM EPRYVISMG+CA GG + Y+V Sbjct: 62 AELFRASPRQADLMIVAGTVTKKMAPQVVRLYNQMAEPRYVISMGACATSGGPFRDGYNV 121 Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181 +RG D ++PVD+YVPGCPP EAL++ ++ LQ++I R Sbjct: 122 LRGIDLLIPVDVYVPGCPPRPEALLHALMTLQEQIDRQK 160 >gi|218527900|sp|B1VKF5|NDHK_CRYJA RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K Length = 238 Score = 226 bits (577), Expect = 1e-57, Method: Composition-based stats. Identities = 72/155 (46%), Positives = 106/155 (68%), Gaps = 1/155 (0%) Query: 27 SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP 86 S + + T + T+++ L WAR SL + +G +CC +E R+D +R+G P Sbjct: 6 SSLLDQTTSNSVISTTLNDLSNWARLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVP 65 Query: 87 RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRG 145 R+SPRQ+D++I AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG Sbjct: 66 RSSPRQADLLITAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRG 125 Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 D+++PVDIY+PGCPP EA+I I+ L++KI + Sbjct: 126 VDKLIPVDIYLPGCPPKPEAIIDAIIKLREKIAQE 160 >gi|281424343|ref|ZP_06255256.1| NADH dehydrogenase I, B subunit [Prevotella oris F0302] gi|281401612|gb|EFB32443.1| NADH dehydrogenase I, B subunit [Prevotella oris F0302] Length = 240 Score = 226 bits (577), Expect = 1e-57, Method: Composition-based stats. Identities = 75/161 (46%), Positives = 111/161 (68%), Gaps = 3/161 (1%) Query: 21 KVDADFSRISSEITHKGF--LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78 K + +I+ E+ G +V S+DQ + W R+ SL +TFG +CC +E M RYD Sbjct: 17 KDNDSLEKITQELNEGGVNVIVGSLDQAINWGRSNSLWSLTFGTSCCGIEFMAVGCARYD 76 Query: 79 LERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137 RFGF R SPRQ+D+++ AGT+TNKMA +R+YD++ EP+YV+++G C GG + Sbjct: 77 FSRFGFEVTRNSPRQADLIMCAGTITNKMAPVFKRLYDEIAEPKYVVAVGGCTISGGPFK 136 Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 SY+VVRG D +VPVD+Y+PGCPP EA++YG++ LQ+K++ Sbjct: 137 KSYNVVRGIDELVPVDVYIPGCPPRPEAILYGMMQLQRKVK 177 >gi|313679586|ref|YP_004057325.1| NADH dehydrogenase subunit b [Oceanithermus profundus DSM 14977] gi|313152301|gb|ADR36152.1| NADH dehydrogenase subunit B [Oceanithermus profundus DSM 14977] Length = 179 Score = 226 bits (577), Expect = 1e-57, Method: Composition-based stats. Identities = 87/154 (56%), Positives = 115/154 (74%), Gaps = 2/154 (1%) Query: 26 FSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA 85 F R E+ +G L T++++LV W R+ SL +TFGLACCA+EMM +S R DL RFG Sbjct: 7 FERDVQELEREGILFTTLEKLVAWGRSNSLWPVTFGLACCAIEMMASSNARNDLSRFGSE 66 Query: 86 -PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR 144 RASPRQ+DVMIVAG L+ KMA +RRVYDQM +P++VI+MG+CA GG ++ Y++V+ Sbjct: 67 VFRASPRQADVMIVAGRLSKKMAPVMRRVYDQMGDPKWVIAMGACAASGGMFNN-YAIVQ 125 Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 + +VPVD+YVPGCPP EALIY ++ LQKKIR Sbjct: 126 SVESVVPVDVYVPGCPPRPEALIYAVMQLQKKIR 159 >gi|126454466|ref|YP_001067829.1| putative NADH-quinone oxidoreductase, B subunit [Burkholderia pseudomallei 1106a] gi|126228108|gb|ABN91648.1| putative NADH-quinone oxidoreductase, B subunit [Burkholderia pseudomallei 1106a] Length = 262 Score = 226 bits (577), Expect = 1e-57, Method: Composition-based stats. Identities = 107/151 (70%), Positives = 126/151 (83%) Query: 32 EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPR 91 + GF+VT++D + A+ SL +MTFGLACCAVEMM A+ RYD++RFG PRASPR Sbjct: 102 TLEKDGFIVTTLDAAMAAAQKNSLWYMTFGLACCAVEMMHAAGARYDMDRFGMIPRASPR 161 Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151 Q D+MIVAGTLTNKMA A+RRVYDQM EPRYV+SMGSCANGGGYYHYSYSVVRGCDRIVP Sbjct: 162 QCDLMIVAGTLTNKMAPAMRRVYDQMAEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVP 221 Query: 152 VDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182 VD+YVPGCPPTAEAL+YG++ LQ+K+ Sbjct: 222 VDVYVPGCPPTAEALVYGLMQLQRKVAERST 252 >gi|295689628|ref|YP_003593321.1| NADH-quinone oxidoreductase subunit B [Caulobacter segnis ATCC 21756] gi|295431531|gb|ADG10703.1| NADH-quinone oxidoreductase, B subunit [Caulobacter segnis ATCC 21756] Length = 192 Score = 226 bits (576), Expect = 1e-57, Method: Composition-based stats. Identities = 133/162 (82%), Positives = 147/162 (90%) Query: 23 DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82 D F +S ++ KGF+ + D L+TWARTGSLMWMTFGLACCAVEMMQASMPRYDLER+ Sbjct: 30 DPFFDGVSQQLADKGFITAAADDLITWARTGSLMWMTFGLACCAVEMMQASMPRYDLERY 89 Query: 83 GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142 GFAPRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYY+YSYSV Sbjct: 90 GFAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYYYSYSV 149 Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 VRGCDR+VPVDIYVPGCPPTAEAL+YG+L LQKKIRR G ++ Sbjct: 150 VRGCDRVVPVDIYVPGCPPTAEALVYGVLQLQKKIRRTGTIE 191 >gi|150017836|ref|YP_001310090.1| NADH-quinone oxidoreductase, B subunit [Clostridium beijerinckii NCIMB 8052] gi|238055288|sp|A6LXQ4|NUOB_CLOB8 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|149904301|gb|ABR35134.1| NADH-quinone oxidoreductase, B subunit [Clostridium beijerinckii NCIMB 8052] Length = 169 Score = 226 bits (576), Expect = 1e-57, Method: Composition-based stats. Identities = 83/164 (50%), Positives = 114/164 (69%), Gaps = 1/164 (0%) Query: 21 KVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLE 80 +V+ + E K ++T +D + + R S +TFGLACCA+EMM A RYD+ Sbjct: 2 EVNFKQDKEIQEQIEKNIILTKLDDTLNYFRAHSFWPLTFGLACCAIEMMAAGGARYDIA 61 Query: 81 RFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS 139 RFG+ RASPRQ+D+MIVAGT+T KMA ++++YDQMPEP++VI+MGSCA GG + S Sbjct: 62 RFGYEVFRASPRQADLMIVAGTITEKMAPIVKKIYDQMPEPKWVIAMGSCATSGGPFVDS 121 Query: 140 YSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 Y+VV G D +PVD+Y+PGCPP EALI+G+L L++KI V Sbjct: 122 YNVVPGADTFLPVDVYIPGCPPRPEALIHGLLTLKEKIIHPKEV 165 >gi|301107946|ref|XP_002903055.1| NADH ubiquinone oxidoreductase, putative [Phytophthora infestans T30-4] gi|262098173|gb|EEY56225.1| NADH ubiquinone oxidoreductase, putative [Phytophthora infestans T30-4] Length = 155 Score = 226 bits (576), Expect = 1e-57, Method: Composition-based stats. Identities = 98/146 (67%), Positives = 123/146 (84%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 ++V+ +D L+ W++ SL ++FGLACCAVEMM + RYD ER G RASPR +DVMI Sbjct: 4 YVVSRLDDLMNWSKKSSLWPLSFGLACCAVEMMHTAGSRYDFERMGLLFRASPRCTDVMI 63 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGT+TNKMA ALRR+YDQMPEP++VISMGSCANGGGYYHYSYSVVRG +RI+PVDIYVP Sbjct: 64 VAGTVTNKMAPALRRIYDQMPEPKFVISMGSCANGGGYYHYSYSVVRGVNRILPVDIYVP 123 Query: 158 GCPPTAEALIYGILLLQKKIRRVGNV 183 GCPPTAEAL++G++ LQKK++ ++ Sbjct: 124 GCPPTAEALLFGVMQLQKKLKGSKSL 149 >gi|253570156|ref|ZP_04847565.1| NADH-quinone oxidoreductase [Bacteroides sp. 1_1_6] gi|251840537|gb|EES68619.1| NADH-quinone oxidoreductase [Bacteroides sp. 1_1_6] Length = 197 Score = 226 bits (576), Expect = 1e-57, Method: Composition-based stats. Identities = 75/160 (46%), Positives = 108/160 (67%), Gaps = 3/160 (1%) Query: 22 VDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDL 79 + ++ E+ G + +D LV W R+ SL +TF +CC +E M RYD+ Sbjct: 19 DNESLEKLVKELNAGGANVFLGVLDDLVNWGRSNSLWPLTFATSCCGIEFMALGAARYDM 78 Query: 80 ERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY 138 RFGF RASPRQ+D+++V GT+TNKMA L+R+YDQMP+P+YV+++G CA GG + Sbjct: 79 ARFGFEVARASPRQADMIMVCGTITNKMAPVLKRLYDQMPDPKYVVAVGGCAVSGGPFKK 138 Query: 139 SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 SY VV G D+I+PVD+Y+PGCPP EA YG++ LQ+K++ Sbjct: 139 SYHVVNGVDKILPVDVYIPGCPPRPEAFYYGMMQLQRKVK 178 >gi|332706504|ref|ZP_08426565.1| NADH-quinone oxidoreductase, B subunit [Lyngbya majuscula 3L] gi|332354388|gb|EGJ33867.1| NADH-quinone oxidoreductase, B subunit [Lyngbya majuscula 3L] Length = 248 Score = 225 bits (575), Expect = 1e-57, Method: Composition-based stats. Identities = 79/188 (42%), Positives = 121/188 (64%), Gaps = 9/188 (4%) Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62 LT + I Q++ L ++ ++++ +++ ++T+VD L WAR SL M +G Sbjct: 5 LTKDSAAIEQQQTNKILNPIER--TQVTQDLSE-NVILTTVDDLYNWARLSSLWPMLYGT 61 Query: 63 ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122 ACC +E R+D +RFG PR+SPRQ+D++I AGT+T KM AL R+Y+QMPEP+Y Sbjct: 62 ACCFIEFAAMIGSRFDFDRFGLVPRSSPRQADLIITAGTITMKMGPALVRLYEQMPEPKY 121 Query: 123 VISMGSCANGGGYYH-YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKK----- 176 VI+MG+C GG + S + VRG D+++PVD+Y+PGCPP EA++ I+ L+KK Sbjct: 122 VIAMGACTITGGMFSVDSPTAVRGVDKLIPVDVYIPGCPPRPEAIMDAIVKLRKKVANES 181 Query: 177 IRRVGNVK 184 I+ G +K Sbjct: 182 IQERGQLK 189 >gi|237714284|ref|ZP_04544765.1| trifunctional NADH dehydrogenase I subunit B/C/D [Bacteroides sp. D1] gi|229445776|gb|EEO51567.1| trifunctional NADH dehydrogenase I subunit B/C/D [Bacteroides sp. D1] Length = 207 Score = 225 bits (575), Expect = 2e-57, Method: Composition-based stats. Identities = 73/160 (45%), Positives = 107/160 (66%), Gaps = 3/160 (1%) Query: 22 VDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDL 79 + ++ E+ G + +D + W R+ SL +TF +CC +E M RYD+ Sbjct: 26 DNESLEKLVKELNAGGANVALGVLDDFINWGRSNSLWPLTFATSCCGIEFMALGAARYDM 85 Query: 80 ERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY 138 RFGF RASPRQ+D+++V GT+TNKMA L+R+YDQMP+P+YV+++G CA GG + Sbjct: 86 ARFGFEVARASPRQADMIMVCGTITNKMAPVLKRLYDQMPDPKYVVAVGGCAVSGGPFKK 145 Query: 139 SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 SY VV G D+I+PVD+Y+PGCPP EA YG++ LQ+K++ Sbjct: 146 SYHVVNGVDKILPVDVYIPGCPPRPEAFYYGMMQLQRKVK 185 >gi|46200221|ref|YP_005888.1| NADH-quinone oxidoreductase chain B [Thermus thermophilus HB27] gi|55980054|ref|YP_143351.1| NADH dehydrogenase subunit B [Thermus thermophilus HB8] gi|2499331|sp|Q56218|NQO6_THET8 RecName: Full=NADH-quinone oxidoreductase subunit 6; AltName: Full=NADH dehydrogenase I subunit 6; AltName: Full=NDH-1 subunit 6 gi|81405216|sp|Q72GC9|NUOB_THET2 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|90109659|pdb|2FUG|6 Chain 6, Crystal Structure Of The Hydrophilic Domain Of Respiratory Complex I From Thermus Thermophilus gi|90109667|pdb|2FUG|F Chain F, Crystal Structure Of The Hydrophilic Domain Of Respiratory Complex I From Thermus Thermophilus gi|90109675|pdb|2FUG|O Chain O, Crystal Structure Of The Hydrophilic Domain Of Respiratory Complex I From Thermus Thermophilus gi|90109683|pdb|2FUG|X Chain X, Crystal Structure Of The Hydrophilic Domain Of Respiratory Complex I From Thermus Thermophilus gi|258588593|pdb|3I9V|6 Chain 6, Crystal Structure Of The Hydrophilic Domain Of Respiratory Complex I From Thermus Thermophilus, Oxidized, 2 MolASU gi|258588601|pdb|3I9V|F Chain F, Crystal Structure Of The Hydrophilic Domain Of Respiratory Complex I From Thermus Thermophilus, Oxidized, 2 MolASU gi|258588609|pdb|3IAM|6 Chain 6, Crystal Structure Of The Hydrophilic Domain Of Respiratory Complex I From Thermus Thermophilus, Reduced, 2 MolASU, With Bound Nadh gi|258588617|pdb|3IAM|F Chain F, Crystal Structure Of The Hydrophilic Domain Of Respiratory Complex I From Thermus Thermophilus, Reduced, 2 MolASU, With Bound Nadh gi|258588625|pdb|3IAS|6 Chain 6, Crystal Structure Of The Hydrophilic Domain Of Respiratory Complex I From Thermus Thermophilus, Oxidized, 4 MolASU, Re-Refined To 3.15 Angstrom Resolution gi|258588633|pdb|3IAS|F Chain F, Crystal Structure Of The Hydrophilic Domain Of Respiratory Complex I From Thermus Thermophilus, Oxidized, 4 MolASU, Re-Refined To 3.15 Angstrom Resolution gi|258588641|pdb|3IAS|O Chain O, Crystal Structure Of The Hydrophilic Domain Of Respiratory Complex I From Thermus Thermophilus, Oxidized, 4 MolASU, Re-Refined To 3.15 Angstrom Resolution gi|258588649|pdb|3IAS|X Chain X, Crystal Structure Of The Hydrophilic Domain Of Respiratory Complex I From Thermus Thermophilus, Oxidized, 4 MolASU, Re-Refined To 3.15 Angstrom Resolution gi|296863609|pdb|3M9S|6 Chain 6, Crystal Structure Of Respiratory Complex I From Thermus Thermophilus gi|296863622|pdb|3M9S|F Chain F, Crystal Structure Of Respiratory Complex I From Thermus Thermophilus gi|1279862|gb|AAA97939.1| NADH dehydrogenase I, subunit NQO6 [Thermus thermophilus] gi|46197849|gb|AAS82261.1| NADH-quinone oxidoreductase chain B [Thermus thermophilus HB27] gi|55771467|dbj|BAD69908.1| NADH-quinone oxidoreductase chain 6 [Thermus thermophilus HB8] Length = 181 Score = 225 bits (575), Expect = 2e-57, Method: Composition-based stats. Identities = 86/154 (55%), Positives = 116/154 (75%), Gaps = 2/154 (1%) Query: 26 FSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA 85 F R E+ +G L T++++LV W R+ SL TFGLACCA+EMM ++ R DL RFG Sbjct: 7 FERDVQELEREGILFTTLEKLVAWGRSNSLWPATFGLACCAIEMMASTDARNDLARFGSE 66 Query: 86 -PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR 144 RASPRQ+DVMIVAG L+ KMA +RRV++QMP+P++VISMG+CA+ GG ++ Y++V+ Sbjct: 67 VFRASPRQADVMIVAGRLSKKMAPVMRRVWEQMPDPKWVISMGACASSGGMFNN-YAIVQ 125 Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 D +VPVD+YVPGCPP EALIY ++ LQKK+R Sbjct: 126 NVDSVVPVDVYVPGCPPRPEALIYAVMQLQKKVR 159 >gi|255691139|ref|ZP_05414814.1| NADH dehydrogenase I, B subunit [Bacteroides finegoldii DSM 17565] gi|260623232|gb|EEX46103.1| NADH dehydrogenase I, B subunit [Bacteroides finegoldii DSM 17565] Length = 200 Score = 225 bits (575), Expect = 2e-57, Method: Composition-based stats. Identities = 74/160 (46%), Positives = 107/160 (66%), Gaps = 3/160 (1%) Query: 22 VDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDL 79 + ++ E+ G + +D + W R+ SL +TF +CC +E M RYD+ Sbjct: 19 DNESLEKLVKELNAGGANIALGVLDDFINWGRSNSLWPLTFATSCCGIEFMALGAARYDM 78 Query: 80 ERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY 138 RFGF RASPRQ+D+++V GT+TNKMA L+R+YDQMP+P+YVI++G CA GG + Sbjct: 79 ARFGFEVARASPRQADMIMVCGTITNKMAPVLKRLYDQMPDPKYVIAVGGCAVSGGPFKK 138 Query: 139 SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 SY VV G D+I+PVD+Y+PGCPP EA YG++ LQ+K++ Sbjct: 139 SYHVVNGVDKILPVDVYIPGCPPRPEAFYYGMMQLQRKVK 178 >gi|330997245|ref|ZP_08321098.1| NADH-quinone oxidoreductase, B subunit [Paraprevotella xylaniphila YIT 11841] gi|329571040|gb|EGG52747.1| NADH-quinone oxidoreductase, B subunit [Paraprevotella xylaniphila YIT 11841] Length = 204 Score = 225 bits (575), Expect = 2e-57, Method: Composition-based stats. Identities = 74/161 (45%), Positives = 109/161 (67%), Gaps = 3/161 (1%) Query: 21 KVDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78 K + R++ ++ G ++ ++D L+ W R+ SL +TFG +CCA+E M RYD Sbjct: 19 KNNDYLLRMAEKLNRDGAGIVLGTLDDLINWGRSNSLWSLTFGTSCCAIEFMALGAARYD 78 Query: 79 LERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137 + RFGF R SPRQ+D+++V GT+T +MA L+R+YDQM EP+YV+++G C GG + Sbjct: 79 MARFGFEVTRNSPRQADMIMVLGTITYRMAPVLKRLYDQMAEPKYVVAVGGCTISGGPFR 138 Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 SY VV G D I+PVD+Y+PGCPP EA YG++ LQ+KI+ Sbjct: 139 KSYHVVNGIDEIIPVDVYIPGCPPRPEAFFYGMMQLQRKIK 179 >gi|290988400|ref|XP_002676909.1| predicted protein [Naegleria gruberi] gi|284090514|gb|EFC44165.1| predicted protein [Naegleria gruberi] Length = 186 Score = 225 bits (575), Expect = 2e-57, Method: Composition-based stats. Identities = 98/142 (69%), Positives = 116/142 (81%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 +L V L WAR S+ +TFGLACCAVEMM + RYDLER+G R +PRQSD MI Sbjct: 7 YLKAPVHDLFAWARISSMWPVTFGLACCAVEMMHVAAARYDLERYGIFFRPTPRQSDAMI 66 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 +AGTLTNKMA ALR+V+DQM EPRY +SMGSCANGGGYYH+SY VVRG D+I+PVD+YVP Sbjct: 67 IAGTLTNKMAPALRKVWDQMAEPRYSVSMGSCANGGGYYHFSYHVVRGADQIIPVDVYVP 126 Query: 158 GCPPTAEALIYGILLLQKKIRR 179 GCPPTAEAL+YG+ +LQKKI+R Sbjct: 127 GCPPTAEALLYGVYMLQKKIKR 148 >gi|154795239|ref|YP_001312203.2| NADH dehydrogenase subunit K [Cycas taitungensis] gi|218527897|sp|A6H5H8|NDHK_CYCTA RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K Length = 261 Score = 225 bits (575), Expect = 2e-57, Method: Composition-based stats. Identities = 71/155 (45%), Positives = 105/155 (67%), Gaps = 1/155 (0%) Query: 27 SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP 86 S + + T + T+++ L WAR SL + +G +CC +E R+D +R+G P Sbjct: 6 SPLLGQTTPNSVISTTLNDLSNWARLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVP 65 Query: 87 RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRG 145 R+SPRQ+D++I AGT+T KMA +L R+Y+QMP P+YVI+MG+C GG + SYS VRG Sbjct: 66 RSSPRQADLIITAGTVTMKMAPSLVRLYEQMPGPKYVIAMGACTITGGMFSTDSYSTVRG 125 Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 D+++PVD+Y+PGCPP EA+I I+ L+KK+ R Sbjct: 126 VDKLIPVDVYLPGCPPKPEAIIDAIIKLRKKVARE 160 >gi|149941520|dbj|BAF64944.1| NADH dehydrogenase subunit K [Cycas taitungensis] gi|156598045|gb|ABU85288.1| NADH-plastoquinone oxidoreductase subunit K [Cycas micronesica] Length = 319 Score = 225 bits (575), Expect = 2e-57, Method: Composition-based stats. Identities = 71/155 (45%), Positives = 105/155 (67%), Gaps = 1/155 (0%) Query: 27 SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP 86 S + + T + T+++ L WAR SL + +G +CC +E R+D +R+G P Sbjct: 64 SPLLGQTTPNSVISTTLNDLSNWARLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVP 123 Query: 87 RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRG 145 R+SPRQ+D++I AGT+T KMA +L R+Y+QMP P+YVI+MG+C GG + SYS VRG Sbjct: 124 RSSPRQADLIITAGTVTMKMAPSLVRLYEQMPGPKYVIAMGACTITGGMFSTDSYSTVRG 183 Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 D+++PVD+Y+PGCPP EA+I I+ L+KK+ R Sbjct: 184 VDKLIPVDVYLPGCPPKPEAIIDAIIKLRKKVARE 218 >gi|332881564|ref|ZP_08449213.1| NADH-quinone oxidoreductase subunit B [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332680562|gb|EGJ53510.1| NADH-quinone oxidoreductase subunit B [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 204 Score = 225 bits (575), Expect = 2e-57, Method: Composition-based stats. Identities = 75/161 (46%), Positives = 110/161 (68%), Gaps = 3/161 (1%) Query: 21 KVDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78 K + R++ ++ G ++ ++D L+ W R+ SL +TFG +CCA+E M RYD Sbjct: 19 KNNDYLLRMAEKLNRDGAGIVLGTLDDLINWGRSNSLWSLTFGTSCCAIEFMALGAARYD 78 Query: 79 LERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137 + RFGF R SPRQ+D+++V GT+T +MA L+R+YDQM EP+YV+++G C GG + Sbjct: 79 MARFGFEVTRNSPRQADMIMVLGTITYRMAPVLKRLYDQMAEPKYVVAVGGCTISGGPFR 138 Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 SY VV G DRI+PVD+Y+PGCPP EA YG++ LQ+KI+ Sbjct: 139 RSYHVVNGIDRIIPVDVYIPGCPPRPEAFFYGMMQLQRKIK 179 >gi|218295761|ref|ZP_03496557.1| NADH-quinone oxidoreductase, B subunit [Thermus aquaticus Y51MC23] gi|218243920|gb|EED10447.1| NADH-quinone oxidoreductase, B subunit [Thermus aquaticus Y51MC23] Length = 181 Score = 225 bits (575), Expect = 2e-57, Method: Composition-based stats. Identities = 85/154 (55%), Positives = 116/154 (75%), Gaps = 2/154 (1%) Query: 26 FSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA 85 F + E+ +G L T++++LV W R+ SL TFGLACCA+EMM ++ R DL RFG Sbjct: 7 FEKDVQELEREGILFTTLEKLVAWGRSNSLWPATFGLACCAIEMMASTDARNDLARFGSE 66 Query: 86 -PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR 144 RASPRQ+DVMIVAG L+ KMA +RRV++QMP+P++VISMG+CA+ GG ++ Y++V+ Sbjct: 67 VFRASPRQADVMIVAGRLSKKMAPVMRRVWEQMPDPKWVISMGACASSGGMFNN-YAIVQ 125 Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 D +VPVD+YVPGCPP EALIY ++ LQKK+R Sbjct: 126 NVDSVVPVDVYVPGCPPRPEALIYAVMQLQKKVR 159 >gi|294674399|ref|YP_003575015.1| proton-translocating NADH-quinone oxidoreductase subunit B [Prevotella ruminicola 23] gi|294473976|gb|ADE83365.1| putative proton-translocating NADH-quinone oxidoreductase, B subunit [Prevotella ruminicola 23] Length = 263 Score = 225 bits (575), Expect = 2e-57, Method: Composition-based stats. Identities = 75/160 (46%), Positives = 110/160 (68%), Gaps = 3/160 (1%) Query: 22 VDADFSRISSEITHKGF--LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDL 79 + +I E+ G + S+DQL+ W R+ SL +TF +CC +E M RYD Sbjct: 18 DNESLEKIIDELHEGGVNVVTGSLDQLINWGRSNSLWSLTFATSCCGIEFMACGCSRYDF 77 Query: 80 ERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY 138 RFGF R SPRQ+D+++ AGT+T+KMA AL+R+YDQM EP+YV+++G CA GG + Sbjct: 78 ARFGFEVTRNSPRQADLIMCAGTITHKMAPALKRLYDQMAEPKYVVAVGGCAISGGPFKS 137 Query: 139 SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 SY VV+G + IVPVD+++PGCPP EA++YG++ LQ+K++ Sbjct: 138 SYHVVKGIEEIVPVDVFIPGCPPRPEAIMYGMMQLQRKVK 177 >gi|11466706|ref|NP_039302.1| NADH dehydrogenase subunit K [Marchantia polymorpha] gi|131322|sp|P06410|NDHK_MARPO RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K gi|11676|emb|CAA28088.1| psbG [Marchantia polymorpha] Length = 243 Score = 225 bits (575), Expect = 2e-57, Method: Composition-based stats. Identities = 74/168 (44%), Positives = 113/168 (67%), Gaps = 2/168 (1%) Query: 14 QSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQAS 73 +S ++ K + S I+ +T+ ++T+ + WAR SL + +G +CC +E Sbjct: 16 DNSTTMLKNSIESSFINKTLTN-SIILTTFNDFSNWARLSSLWPLLYGTSCCFIEFASLI 74 Query: 74 MPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGG 133 R+D +R+G PR+SPRQ+D++I AGT+T KMA +L R+Y+QMPEP+YVI+MG+C G Sbjct: 75 GSRFDFDRYGLVPRSSPRQADLIITAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITG 134 Query: 134 GYYH-YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 G + SY+ VRG D+++PVDIY+PGCPP EA+I I+ L+KKI + Sbjct: 135 GMFSTDSYTTVRGVDKLIPVDIYLPGCPPKPEAIIDAIIKLRKKIAQE 182 >gi|238065078|sp|Q11XR8|NUOB1_CYTH3 RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName: Full=NADH dehydrogenase I subunit B 1; AltName: Full=NDH-1 subunit B 1 Length = 178 Score = 225 bits (575), Expect = 2e-57, Method: Composition-based stats. Identities = 96/156 (61%), Positives = 115/156 (73%), Gaps = 1/156 (0%) Query: 26 FSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA 85 S + + G +V+ ++ ++ WAR SL M+FGLACCA+EMMQ YDL+RFG Sbjct: 1 MSLLDHKFGQGGIVVSQLEDVLNWARLSSLFPMSFGLACCAIEMMQTFTSGYDLDRFGVI 60 Query: 86 PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVR 144 PR SPRQSDVMIVAGT+T KMA +RR+Y+QMPEPRYVISMGSC+N GG Y Y VV+ Sbjct: 61 PRPSPRQSDVMIVAGTVTFKMADRIRRLYEQMPEPRYVISMGSCSNCGGPYWEHGYHVVK 120 Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 G DRIVPVDIYVPGCPP EALI G L LQ+KIR+ Sbjct: 121 GVDRIVPVDIYVPGCPPRPEALIGGFLKLQEKIRKE 156 >gi|108796798|ref|YP_636385.1| NADH dehydrogenase subunit K [Staurastrum punctulatum] gi|122211808|sp|Q32RZ1|NDHK_STAPU RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K gi|61393566|gb|AAX45707.1| 27 kDa subunit of NADH-ubiquinone oxidoreductase [Staurastrum punctulatum] Length = 280 Score = 225 bits (574), Expect = 2e-57, Method: Composition-based stats. Identities = 71/180 (39%), Positives = 112/180 (62%), Gaps = 5/180 (2%) Query: 6 VNQKIISGQSSCSLEKVDADFS----RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFG 61 +N ++ +S E ++ + I+ E ++T+ W R SL + +G Sbjct: 3 INSELFRSSNSFQEEGFESVTNGLSFSITEENISDSVILTTFHDFTNWIRLSSLWPLLYG 62 Query: 62 LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPR 121 +CC +E R+D +R+G PR+SPRQ+D++I AGT+T KMA +L R+Y+QMPEP+ Sbjct: 63 TSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLIITAGTVTMKMAPSLVRLYEQMPEPK 122 Query: 122 YVISMGSCANGGGYYH-YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 YVI+MG+C GG + SYS VRG D+++PVD+Y+PGCPP EA+I ++ L+KK+ + Sbjct: 123 YVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEAIIDAVIKLRKKVGQE 182 >gi|297565713|ref|YP_003684685.1| NADH-quinone oxidoreductase subunit B [Meiothermus silvanus DSM 9946] gi|296850162|gb|ADH63177.1| NADH-quinone oxidoreductase, B subunit [Meiothermus silvanus DSM 9946] Length = 179 Score = 225 bits (574), Expect = 2e-57, Method: Composition-based stats. Identities = 87/154 (56%), Positives = 118/154 (76%), Gaps = 2/154 (1%) Query: 26 FSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA 85 FS+ E+ ++G L T++++LV W R+ SL TFGLACCA+EMM ++ R DL RFG Sbjct: 8 FSKDVQELENEGVLFTTLEKLVAWGRSNSLWPATFGLACCAIEMMASTDARNDLARFGSE 67 Query: 86 -PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR 144 RASPRQ+DVMIVAG L+ KMA +RRVYDQMP+P++VISMG+CA+ GG ++ Y++V+ Sbjct: 68 VFRASPRQADVMIVAGRLSKKMAPVMRRVYDQMPDPKWVISMGACASSGGMFNN-YAIVQ 126 Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 D +VPVD+YVPGCPP EALIY ++ LQKK++ Sbjct: 127 NVDSVVPVDVYVPGCPPRPEALIYAVMQLQKKVQ 160 >gi|160886847|ref|ZP_02067850.1| hypothetical protein BACOVA_04861 [Bacteroides ovatus ATCC 8483] gi|260171803|ref|ZP_05758215.1| NADH dehydrogenase I, chain B [Bacteroides sp. D2] gi|299148405|ref|ZP_07041467.1| proton-translocating NADH-quinone oxidoreductase, B subunit [Bacteroides sp. 3_1_23] gi|315920115|ref|ZP_07916355.1| NADH-quinone oxidoreductase [Bacteroides sp. D2] gi|156107258|gb|EDO09003.1| hypothetical protein BACOVA_04861 [Bacteroides ovatus ATCC 8483] gi|298513166|gb|EFI37053.1| proton-translocating NADH-quinone oxidoreductase, B subunit [Bacteroides sp. 3_1_23] gi|313693990|gb|EFS30825.1| NADH-quinone oxidoreductase [Bacteroides sp. D2] Length = 200 Score = 225 bits (574), Expect = 2e-57, Method: Composition-based stats. Identities = 73/160 (45%), Positives = 107/160 (66%), Gaps = 3/160 (1%) Query: 22 VDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDL 79 + ++ E+ G + +D + W R+ SL +TF +CC +E M RYD+ Sbjct: 19 DNESLEKLVKELNAGGANVALGVLDDFINWGRSNSLWPLTFATSCCGIEFMALGAARYDM 78 Query: 80 ERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY 138 RFGF RASPRQ+D+++V GT+TNKMA L+R+YDQMP+P+YV+++G CA GG + Sbjct: 79 ARFGFEVARASPRQADMIMVCGTITNKMAPVLKRLYDQMPDPKYVVAVGGCAVSGGPFKK 138 Query: 139 SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 SY VV G D+I+PVD+Y+PGCPP EA YG++ LQ+K++ Sbjct: 139 SYHVVNGVDKILPVDVYIPGCPPRPEAFYYGMMQLQRKVK 178 >gi|282860263|ref|ZP_06269333.1| NADH-quinone oxidoreductase, B subunit [Prevotella bivia JCVIHMP010] gi|282586937|gb|EFB92172.1| NADH-quinone oxidoreductase, B subunit [Prevotella bivia JCVIHMP010] Length = 301 Score = 225 bits (574), Expect = 2e-57, Method: Composition-based stats. Identities = 76/161 (47%), Positives = 114/161 (70%), Gaps = 3/161 (1%) Query: 21 KVDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78 K + +++S++ G ++ ++DQL+ W R+ SL +TF +CC +E M RYD Sbjct: 17 KDNDTLDKMASDLNDGGTSLVLGNLDQLINWGRSNSLWSLTFATSCCGIEFMSVGCARYD 76 Query: 79 LERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137 RFGF R SPRQ+D+++ AGT+TNKMA AL+R+YD+M EP+YVI++G CA GG + Sbjct: 77 FSRFGFEVTRNSPRQADLIMCAGTITNKMAPALKRLYDEMAEPKYVIAVGGCAISGGPFK 136 Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 SY V+RG D I+PVD+++PGCPP EA+IYG++ LQ+K++ Sbjct: 137 NSYHVMRGIDEIIPVDVFIPGCPPRPEAIIYGMMQLQRKVK 177 >gi|189500538|ref|YP_001960008.1| NADH dehydrogenase subunit B [Chlorobium phaeobacteroides BS1] gi|238055285|sp|B3EKA0|NUOB_CHLPB RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|189495979|gb|ACE04527.1| NADH-quinone oxidoreductase, B subunit [Chlorobium phaeobacteroides BS1] Length = 190 Score = 225 bits (574), Expect = 2e-57, Method: Composition-based stats. Identities = 91/151 (60%), Positives = 117/151 (77%), Gaps = 1/151 (0%) Query: 29 ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88 + ++I++ LVTSVD ++ WAR SL M FGLACCA+EMM + YDLERFG PR+ Sbjct: 4 LDAKISNHNVLVTSVDNVLNWARLSSLWPMGFGLACCAIEMMATNASNYDLERFGIFPRS 63 Query: 89 SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGCD 147 SPRQSD+MIVAGT+T KMA + R+Y+QMPEPRYV+SMGSC+N GG Y + Y V++G D Sbjct: 64 SPRQSDLMIVAGTVTMKMAERVIRLYEQMPEPRYVLSMGSCSNCGGPYWKHGYHVLKGVD 123 Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 RI+PVD+YVPGCPP EALI G++ +Q+ IR Sbjct: 124 RIIPVDVYVPGCPPRPEALIGGLMKVQELIR 154 >gi|237719852|ref|ZP_04550333.1| NADH dehydrogenase subunit I B [Bacteroides sp. 2_2_4] gi|262408339|ref|ZP_06084886.1| NADH-quinone oxidoreductase subunit C/D [Bacteroides sp. 2_1_22] gi|293373614|ref|ZP_06619962.1| NADH-quinone oxidoreductase, B subunit [Bacteroides ovatus SD CMC 3f] gi|294809425|ref|ZP_06768130.1| NADH-quinone oxidoreductase, B subunit [Bacteroides xylanisolvens SD CC 1b] gi|298480351|ref|ZP_06998549.1| proton-translocating NADH-quinone oxidoreductase, B subunit [Bacteroides sp. D22] gi|229451121|gb|EEO56912.1| NADH dehydrogenase subunit I B [Bacteroides sp. 2_2_4] gi|262353891|gb|EEZ02984.1| NADH-quinone oxidoreductase subunit C/D [Bacteroides sp. 2_1_22] gi|292631439|gb|EFF50069.1| NADH-quinone oxidoreductase, B subunit [Bacteroides ovatus SD CMC 3f] gi|294443361|gb|EFG12123.1| NADH-quinone oxidoreductase, B subunit [Bacteroides xylanisolvens SD CC 1b] gi|298273632|gb|EFI15195.1| proton-translocating NADH-quinone oxidoreductase, B subunit [Bacteroides sp. D22] Length = 200 Score = 225 bits (574), Expect = 2e-57, Method: Composition-based stats. Identities = 73/160 (45%), Positives = 107/160 (66%), Gaps = 3/160 (1%) Query: 22 VDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDL 79 + ++ E+ G + +D + W R+ SL +TF +CC +E M RYD+ Sbjct: 19 DNESLEKLVKELNAGGANVALGVLDDFINWGRSNSLWPLTFATSCCGIEFMALGAARYDM 78 Query: 80 ERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY 138 RFGF RASPRQ+D+++V GT+TNKMA L+R+YDQMP+P+YV+++G CA GG + Sbjct: 79 ARFGFEVARASPRQADMIMVCGTITNKMAPVLKRLYDQMPDPKYVVAVGGCAVSGGPFKK 138 Query: 139 SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 SY VV G D+I+PVD+Y+PGCPP EA YG++ LQ+K++ Sbjct: 139 SYHVVNGVDKILPVDVYIPGCPPRPEAFYYGMMQLQRKVK 178 >gi|291296255|ref|YP_003507653.1| NADH-quinone oxidoreductase B subunit [Meiothermus ruber DSM 1279] gi|290471214|gb|ADD28633.1| NADH-quinone oxidoreductase, B subunit [Meiothermus ruber DSM 1279] Length = 179 Score = 225 bits (574), Expect = 2e-57, Method: Composition-based stats. Identities = 85/154 (55%), Positives = 118/154 (76%), Gaps = 2/154 (1%) Query: 26 FSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA 85 F++ E+ ++G L T++++L+ W R+ SL TFGLACCA+EMM ++ R DL RFG Sbjct: 8 FTKDVQELENEGVLFTTLEKLIAWGRSNSLWPATFGLACCAIEMMASTDARNDLSRFGSE 67 Query: 86 -PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR 144 RASPRQ+DVMIVAG L+ KMA +RRVYDQMP+P++VISMG+CA+ GG ++ Y++V+ Sbjct: 68 VFRASPRQADVMIVAGRLSKKMAPVMRRVYDQMPDPKWVISMGACASSGGMFNN-YAIVQ 126 Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 D +VPVD++VPGCPP EALIY ++ LQKKI+ Sbjct: 127 NVDSVVPVDVFVPGCPPRPEALIYAVMQLQKKIQ 160 >gi|145219899|ref|YP_001130608.1| NADH-quinone oxidoreductase, B subunit [Prosthecochloris vibrioformis DSM 265] gi|238065192|sp|A4SF47|NUOB_PROVI RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|145206063|gb|ABP37106.1| NADH dehydrogenase subunit B [Chlorobium phaeovibrioides DSM 265] Length = 189 Score = 225 bits (574), Expect = 2e-57, Method: Composition-based stats. Identities = 90/154 (58%), Positives = 116/154 (75%), Gaps = 1/154 (0%) Query: 29 ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88 + + ++ + LVTSVD ++ WAR SL M FGLACCA+EMM + YDLERFG PR+ Sbjct: 4 LDAAVSRQNVLVTSVDSVLNWARLSSLWPMGFGLACCAIEMMATNASNYDLERFGIFPRS 63 Query: 89 SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCD 147 SPRQSD+MIVAGT+T KMA + R+Y+QMPEPRYV+SMGSC+N GG Y Y V++G D Sbjct: 64 SPRQSDLMIVAGTVTMKMAERVVRLYEQMPEPRYVLSMGSCSNCGGPYWEHGYHVLKGVD 123 Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181 R++PVD+YVPGCPP EALI G++ +Q+ IR G Sbjct: 124 RVIPVDVYVPGCPPRPEALIGGLMKIQELIRMEG 157 >gi|33860851|ref|NP_892412.1| NADH dehydrogenase subunit B [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|81576412|sp|Q7V303|NDHK_PROMP RecName: Full=NAD(P)H-quinone oxidoreductase subunit K; AltName: Full=NAD(P)H dehydrogenase I subunit K; AltName: Full=NDH-1 subunit K; Short=NDH-K gi|33633793|emb|CAE18752.1| putative respiratory-chain NADH dehydrogenase subunit [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 244 Score = 225 bits (574), Expect = 2e-57, Method: Composition-based stats. Identities = 71/152 (46%), Positives = 104/152 (68%), Gaps = 1/152 (0%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93 + ++TS+D L WAR SL + +G ACC +E R+D +RFG PR+SPRQ+ Sbjct: 30 LSENIIMTSLDDLHNWARLSSLWPLLYGTACCFIEFAALIGSRFDFDRFGLVPRSSPRQA 89 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGCDRIVPV 152 D++IVAGT+T KMA AL R+Y+QMPEP+YVI+MG+C GG + S + VRG D+++PV Sbjct: 90 DLLIVAGTVTMKMAPALVRLYEQMPEPKYVIAMGACTITGGMFSADSTTAVRGVDKLIPV 149 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 D+Y+PGCPP EA+ ++ L+KK+ ++ Sbjct: 150 DLYLPGCPPRPEAIFDAVIKLRKKVANESILE 181 >gi|299140925|ref|ZP_07034063.1| proton-translocating NADH-quinone oxidoreductase, B subunit [Prevotella oris C735] gi|298577891|gb|EFI49759.1| proton-translocating NADH-quinone oxidoreductase, B subunit [Prevotella oris C735] Length = 247 Score = 225 bits (574), Expect = 2e-57, Method: Composition-based stats. Identities = 75/161 (46%), Positives = 111/161 (68%), Gaps = 3/161 (1%) Query: 21 KVDADFSRISSEITHKGF--LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78 K + +I+ E+ G +V S+DQ + W R+ SL +TFG +CC +E M RYD Sbjct: 24 KDNDSLEKITQELNEGGVNVIVGSLDQAINWGRSNSLWSLTFGTSCCGIEFMAVGCARYD 83 Query: 79 LERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137 RFGF R SPRQ+D+++ AGT+TNKMA +R+YD++ EP+YV+++G C GG + Sbjct: 84 FSRFGFEVTRNSPRQADLIMCAGTITNKMAPVFKRLYDEIAEPKYVVAVGGCTISGGPFK 143 Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 SY+VVRG D +VPVD+Y+PGCPP EA++YG++ LQ+K++ Sbjct: 144 KSYNVVRGIDELVPVDVYIPGCPPRPEAILYGMMQLQRKVK 184 >gi|298384973|ref|ZP_06994532.1| proton-translocating NADH-quinone oxidoreductase, B subunit [Bacteroides sp. 1_1_14] gi|298262117|gb|EFI04982.1| proton-translocating NADH-quinone oxidoreductase, B subunit [Bacteroides sp. 1_1_14] Length = 197 Score = 225 bits (574), Expect = 2e-57, Method: Composition-based stats. Identities = 74/160 (46%), Positives = 108/160 (67%), Gaps = 3/160 (1%) Query: 22 VDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDL 79 + ++ E+ G + +D LV W R+ SL +TF +CC +E M RYD+ Sbjct: 19 DNESLEKLVKELNAGGANVFLGVLDDLVNWGRSNSLWPLTFATSCCGIEFMALGAARYDM 78 Query: 80 ERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY 138 RFGF RASPRQ+D+++V GT+TNKMA L+R+YDQMP+P+YV+++G CA GG + Sbjct: 79 ARFGFEVARASPRQADMIMVCGTITNKMAPVLKRLYDQMPDPKYVVAVGGCAVSGGPFKK 138 Query: 139 SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 SY V+ G D+I+PVD+Y+PGCPP EA YG++ LQ+K++ Sbjct: 139 SYHVLNGVDKILPVDVYIPGCPPRPEAFYYGMMQLQRKVK 178 >gi|320449689|ref|YP_004201785.1| NADH-quinone oxidoreductase subunit B [Thermus scotoductus SA-01] gi|320149858|gb|ADW21236.1| NADH-quinone oxidoreductase, subunit B [Thermus scotoductus SA-01] Length = 181 Score = 225 bits (574), Expect = 2e-57, Method: Composition-based stats. Identities = 86/154 (55%), Positives = 116/154 (75%), Gaps = 2/154 (1%) Query: 26 FSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA 85 F R E+ +G L T++++LV W R+ SL TFGLACCA+EMM ++ R DL RFG Sbjct: 7 FERDVQELEREGILFTTLEKLVAWGRSNSLWPATFGLACCAIEMMASTDARNDLARFGSE 66 Query: 86 -PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR 144 RASPRQ+DVMIVAG L+ KMA +RRV++QMP+P++VISMG+CA+ GG ++ Y++V+ Sbjct: 67 VFRASPRQADVMIVAGRLSKKMAPVMRRVWEQMPDPKWVISMGACASSGGMFNN-YAIVQ 125 Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 D +VPVD+YVPGCPP EALIY ++ LQKK+R Sbjct: 126 NVDSVVPVDVYVPGCPPRPEALIYAVMQLQKKVR 159 >gi|121597251|ref|YP_990264.1| NADH-quinone oxidoreductase, B subunit [Burkholderia mallei SAVP1] gi|254355774|ref|ZP_04972053.1| NADH-quinone oxidoreductase, B subunit [Burkholderia mallei 2002721280] gi|121225049|gb|ABM48580.1| NADH-quinone oxidoreductase, B subunit [Burkholderia mallei SAVP1] gi|148024745|gb|EDK82928.1| NADH-quinone oxidoreductase, B subunit [Burkholderia mallei 2002721280] Length = 293 Score = 225 bits (574), Expect = 2e-57, Method: Composition-based stats. Identities = 107/151 (70%), Positives = 126/151 (83%) Query: 32 EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPR 91 + GF+VT++D + A+ SL +MTFGLACCAVEMM A+ RYD++RFG PRASPR Sbjct: 133 TLEKDGFIVTTLDAAMAAAQKNSLWYMTFGLACCAVEMMHAAGARYDMDRFGMIPRASPR 192 Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151 Q D+MIVAGTLTNKMA A+RRVYDQM EPRYV+SMGSCANGGGYYHYSYSVVRGCDRIVP Sbjct: 193 QCDLMIVAGTLTNKMAPAMRRVYDQMAEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVP 252 Query: 152 VDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182 VD+YVPGCPPTAEAL+YG++ LQ+K+ Sbjct: 253 VDVYVPGCPPTAEALVYGLMQLQRKVAERST 283 >gi|75908080|ref|YP_322376.1| NADH dehydrogenase subunit B [Anabaena variabilis ATCC 29413] gi|6685694|sp|Q9XBL7|NDHK_ANAVT RecName: Full=NAD(P)H-quinone oxidoreductase subunit K; AltName: Full=NAD(P)H dehydrogenase I subunit K; AltName: Full=NDH-1 subunit K; Short=NDH-K gi|5139342|emb|CAB45647.1| NDH-K protein [Anabaena variabilis] gi|75701805|gb|ABA21481.1| NADH dehydrogenase subunit B [Anabaena variabilis ATCC 29413] Length = 245 Score = 225 bits (574), Expect = 2e-57, Method: Composition-based stats. Identities = 74/173 (42%), Positives = 110/173 (63%), Gaps = 4/173 (2%) Query: 6 VNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACC 65 +N + + + ++ ++ + ++T+VD L WAR SL + FG ACC Sbjct: 3 LNSDLTTQDKERIINPIERP---TVTQDLSENVILTTVDDLYNWARLSSLWPLLFGTACC 59 Query: 66 AVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVIS 125 +E R+D +RFG PR+SPRQ+D++I AGT+T KMA L R+Y+QMPEP+YVI+ Sbjct: 60 FIEFAALIGSRFDFDRFGLIPRSSPRQADLIITAGTITMKMAPQLVRLYEQMPEPKYVIA 119 Query: 126 MGSCANGGGYYH-YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 MG+C GG + S + VRG D+++PVD+Y+PGCPP EA+I I+ L+KKI Sbjct: 120 MGACTITGGMFSVDSPTAVRGVDKLIPVDVYLPGCPPRPEAIIDAIIKLRKKI 172 >gi|29349474|ref|NP_812977.1| NADH dehydrogenase subunit B [Bacteroides thetaiotaomicron VPI-5482] gi|81586646|sp|Q8A0F5|NUOB_BACTN RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|29341383|gb|AAO79171.1| NADH dehydrogenase I, chain B [Bacteroides thetaiotaomicron VPI-5482] Length = 197 Score = 225 bits (574), Expect = 2e-57, Method: Composition-based stats. Identities = 74/160 (46%), Positives = 108/160 (67%), Gaps = 3/160 (1%) Query: 22 VDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDL 79 + ++ E+ G + +D LV W R+ SL +TF +CC +E M RYD+ Sbjct: 19 DNESLEKLVKELNTGGANVFLGVLDDLVNWGRSNSLWPLTFATSCCGIEFMALGAARYDM 78 Query: 80 ERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY 138 RFGF RASPRQ+D+++V GT+TNKMA L+R+YDQMP+P+YV+++G CA GG + Sbjct: 79 ARFGFEVARASPRQADMIMVCGTITNKMAPVLKRLYDQMPDPKYVVAVGGCAVSGGPFKK 138 Query: 139 SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 SY V+ G D+I+PVD+Y+PGCPP EA YG++ LQ+K++ Sbjct: 139 SYHVLNGVDKILPVDVYIPGCPPRPEAFYYGMMQLQRKVK 178 >gi|255036234|ref|YP_003086855.1| NADH-quinone oxidoreductase, B subunit [Dyadobacter fermentans DSM 18053] gi|254948990|gb|ACT93690.1| NADH-quinone oxidoreductase, B subunit [Dyadobacter fermentans DSM 18053] Length = 176 Score = 225 bits (574), Expect = 2e-57, Method: Composition-based stats. Identities = 93/149 (62%), Positives = 111/149 (74%), Gaps = 1/149 (0%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP 90 ++ G ++T+ + L+ WAR SL M FGLACCA+EMM YDLERFG PR SP Sbjct: 5 TKTGDGGIILTNAEDLMNWARLSSLWPMGFGLACCAIEMMATYAANYDLERFGIMPRPSP 64 Query: 91 RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRI 149 RQSDVMIVAGT+T KMA +RR+Y+QMPEPRYVISMGSC+N GG Y Y VV+G DRI Sbjct: 65 RQSDVMIVAGTVTFKMADRIRRLYEQMPEPRYVISMGSCSNCGGPYWEHGYHVVKGVDRI 124 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIR 178 +PVD+YVPGCPP EALI G + LQ+KIR Sbjct: 125 IPVDVYVPGCPPRPEALIGGFMKLQEKIR 153 >gi|22711920|ref|NP_683807.1| NADH dehydrogenase subunit K [Chaetosphaeridium globosum] gi|75272587|sp|Q8M9X9|NDHK_CHAGL RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K gi|22416924|gb|AAM96524.1| subunit K of NADH-ubiquinone oxidoreductase [Chaetosphaeridium globosum] Length = 242 Score = 225 bits (574), Expect = 2e-57, Method: Composition-based stats. Identities = 69/151 (45%), Positives = 103/151 (68%), Gaps = 1/151 (0%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP 90 E ++T+++ WAR SL + +G +CC +E R+D +R+G PR+SP Sbjct: 31 KEELSNSIILTTLNDFSNWARLSSLWPLLYGTSCCFIEFAALIGSRFDFDRYGLVPRSSP 90 Query: 91 RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGCDRI 149 RQ+D++I AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D++ Sbjct: 91 RQADLIITAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKL 150 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 +PVDIY+PGCPP EA+I ++ L+KK+ + Sbjct: 151 IPVDIYLPGCPPKPEAIIDAVIKLRKKVGQE 181 >gi|159026401|emb|CAO88930.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 247 Score = 225 bits (573), Expect = 2e-57, Method: Composition-based stats. Identities = 78/175 (44%), Positives = 119/175 (68%), Gaps = 4/175 (2%) Query: 4 TTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLA 63 T+ ++II QS L ++ ++++ +++ ++T+VD L WAR SL M +G A Sbjct: 6 TSEFKQIIEQQSEKILNPIER--TKVTQDLSE-NVILTTVDDLYNWARLSSLWPMLYGTA 62 Query: 64 CCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYV 123 CC +E R+D +RFG PR+SPRQ+D++I AGT+T KMA AL R+Y++MPEP+YV Sbjct: 63 CCFIEFAALIGSRFDFDRFGLVPRSSPRQADLIITAGTVTMKMAPALVRLYEEMPEPKYV 122 Query: 124 ISMGSCANGGGYY-HYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 I+MG+C GG + S + VRG D+++PVD+Y+PGCPP EA+I I+ L+KK+ Sbjct: 123 IAMGACTITGGMFSSDSTTAVRGVDKLIPVDVYIPGCPPRPEAIIDAIIKLRKKV 177 >gi|323345257|ref|ZP_08085480.1| NADH-quinone oxidoreductase subunit B [Prevotella oralis ATCC 33269] gi|323093371|gb|EFZ35949.1| NADH-quinone oxidoreductase subunit B [Prevotella oralis ATCC 33269] Length = 242 Score = 225 bits (573), Expect = 3e-57, Method: Composition-based stats. Identities = 77/161 (47%), Positives = 111/161 (68%), Gaps = 3/161 (1%) Query: 21 KVDADFSRISSEITHKGF--LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78 K ++ +I E+ G + S+DQ++ W R+ SL +TF +CC +E M RYD Sbjct: 17 KDNSSLEQIVDELHEGGVNVVTGSLDQMINWGRSNSLWSLTFATSCCGIEFMAVGCARYD 76 Query: 79 LERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137 RFGF R SPRQ+D+++ AGT+TNKMA A +R+YD+M EP+YVI++G CA GG + Sbjct: 77 FARFGFEVTRNSPRQADLIMCAGTITNKMAPAFKRLYDEMAEPKYVIAVGGCAISGGPFK 136 Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 SY VVRG D IVPVD+++PGCPP EA++YG++ LQ+K++ Sbjct: 137 SSYHVVRGIDEIVPVDVFIPGCPPRPEAIMYGMMQLQRKVK 177 >gi|302035990|ref|YP_003796312.1| NADH-quinone oxidoreductase subunit B [Candidatus Nitrospira defluvii] gi|300604054|emb|CBK40386.1| NADH-quinone oxidoreductase, subunit B [Candidatus Nitrospira defluvii] Length = 159 Score = 225 bits (573), Expect = 3e-57, Method: Composition-based stats. Identities = 89/152 (58%), Positives = 112/152 (73%), Gaps = 2/152 (1%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APRAS 89 L T++D V WAR SL MTFGLACCA+EM+ + RYD++RFG RAS Sbjct: 5 ERQLDANILTTNLDAFVGWARKSSLWPMTFGLACCAIEMIASVSSRYDIDRFGAGVFRAS 64 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQSD+MIVAGT++ KMA +RR+YDQM EPRYVISMGSCA G +Y+ SY+VV+G D+I Sbjct: 65 PRQSDLMIVAGTVSRKMAPVIRRIYDQMAEPRYVISMGSCATSGNHYN-SYAVVQGVDQI 123 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181 VPVD+Y+ GCPP EAL+ G+L LQ+KI+R Sbjct: 124 VPVDVYIAGCPPRPEALLDGLLKLQEKIQREK 155 >gi|124382496|ref|YP_001024763.1| NADH-quinone oxidoreductase, B subunit [Burkholderia mallei NCTC 10229] gi|126447059|ref|YP_001079101.1| NADH-quinone oxidoreductase, B subunit [Burkholderia mallei NCTC 10247] gi|124290516|gb|ABM99785.1| NADH-quinone oxidoreductase, B subunit [Burkholderia mallei NCTC 10229] gi|126239913|gb|ABO03025.1| NADH-quinone oxidoreductase, B subunit [Burkholderia mallei NCTC 10247] Length = 322 Score = 225 bits (573), Expect = 3e-57, Method: Composition-based stats. Identities = 107/151 (70%), Positives = 126/151 (83%) Query: 32 EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPR 91 + GF+VT++D + A+ SL +MTFGLACCAVEMM A+ RYD++RFG PRASPR Sbjct: 162 TLEKDGFIVTTLDAAMAAAQKNSLWYMTFGLACCAVEMMHAAGARYDMDRFGMIPRASPR 221 Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151 Q D+MIVAGTLTNKMA A+RRVYDQM EPRYV+SMGSCANGGGYYHYSYSVVRGCDRIVP Sbjct: 222 QCDLMIVAGTLTNKMAPAMRRVYDQMAEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVP 281 Query: 152 VDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182 VD+YVPGCPPTAEAL+YG++ LQ+K+ Sbjct: 282 VDVYVPGCPPTAEALVYGLMQLQRKVAERST 312 >gi|315453251|ref|YP_004073521.1| NADH-quinone oxidoreductase subunit B [Helicobacter felis ATCC 49179] gi|315132303|emb|CBY82931.1| NADH-quinone oxidoreductase subunit B [Helicobacter felis ATCC 49179] Length = 169 Score = 225 bits (573), Expect = 3e-57, Method: Composition-based stats. Identities = 83/146 (56%), Positives = 110/146 (75%), Gaps = 1/146 (0%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 +T++D+L+ W R+ SL +T+GLACCA+EMM R+D +RFG RASPRQSDVMI Sbjct: 16 IALTTLDKLLNWGRSNSLWPLTYGLACCAIEMMATGGSRFDFDRFGTIFRASPRQSDVMI 75 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 +AGTLT K A RR+YDQMPEP++VISMGSCAN GG ++ +Y+ V+G DR++PVDIY+P Sbjct: 76 IAGTLTKKHAEFTRRLYDQMPEPKWVISMGSCANTGGMFN-TYATVQGVDRVIPVDIYLP 134 Query: 158 GCPPTAEALIYGILLLQKKIRRVGNV 183 GC P E L Y +++LQ KIRR + Sbjct: 135 GCAPRPETLQYALMVLQDKIRRQKAL 160 >gi|261879876|ref|ZP_06006303.1| NADH dehydrogenase I subunit B [Prevotella bergensis DSM 17361] gi|270333469|gb|EFA44255.1| NADH dehydrogenase I subunit B [Prevotella bergensis DSM 17361] Length = 262 Score = 225 bits (573), Expect = 3e-57, Method: Composition-based stats. Identities = 76/176 (43%), Positives = 113/176 (64%), Gaps = 3/176 (1%) Query: 6 VNQKIISGQSSCSLEKVDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLA 63 VN++ K + RI+ E+ G ++ S+D + W R+ S +TFG + Sbjct: 3 VNKRAKIKSIPYGEFKDNDTLERIAKELNDGGANVVLGSLDAAINWGRSNSPWSLTFGTS 62 Query: 64 CCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122 CC +E M RYD+ RFG+ R SPRQ+D+++ AGT+TNKMA +R+YD+M EP+Y Sbjct: 63 CCGIEFMAIGCSRYDMARFGWEVTRNSPRQADLIMCAGTITNKMAPVFKRLYDEMAEPKY 122 Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 V+++G C GG + SY+VVRG +VPVD+Y+PGCPP E+LIYG++ LQ+KI+ Sbjct: 123 VVAVGGCTISGGPFKKSYNVVRGISELVPVDVYIPGCPPRPESLIYGMMQLQRKIK 178 >gi|119897120|ref|YP_932333.1| NADH-quinone oxidoreductase subunit B [Azoarcus sp. BH72] gi|218527969|sp|A1K3P1|NUOB2_AZOSB RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName: Full=NADH dehydrogenase I subunit B 2; AltName: Full=NDH-1 subunit B 2 gi|119669533|emb|CAL93446.1| conserved hypothetical NADH-quinone oxidoreductase chain B [Azoarcus sp. BH72] Length = 159 Score = 225 bits (573), Expect = 3e-57, Method: Composition-based stats. Identities = 104/150 (69%), Positives = 128/150 (85%) Query: 30 SSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS 89 + + GFL+T +D L R+ S+ ++TFGLACCAVEMMQA+ RYD++RFG PRAS Sbjct: 3 TPTLHGDGFLLTRLDTLCDMVRSNSMWYLTFGLACCAVEMMQAAASRYDMDRFGMIPRAS 62 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQ+D++IVAGTLTNKMA A+R++YDQM EPRYVISMGSCANGGGYYHYSYSV RGCDRI Sbjct: 63 PRQADLIIVAGTLTNKMAPAIRKIYDQMAEPRYVISMGSCANGGGYYHYSYSVARGCDRI 122 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRR 179 +PVDIY+PGCPPTAEAL+YG++ LQ K++R Sbjct: 123 LPVDIYIPGCPPTAEALLYGLIQLQNKLKR 152 >gi|332885916|gb|EGK06160.1| NADH-quinone oxidoreductase subunit B [Dysgonomonas mossii DSM 22836] Length = 194 Score = 225 bits (573), Expect = 3e-57, Method: Composition-based stats. Identities = 78/161 (48%), Positives = 107/161 (66%), Gaps = 3/161 (1%) Query: 21 KVDADFSRISSEITHKGF--LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78 + + E+ G +V +D L+ W R+ S+ + F +CC +E M ++ RYD Sbjct: 17 RDNEYLEDYVKELNEGGVPVIVGKLDDLINWGRSNSVWPLAFATSCCGIEFMASAAARYD 76 Query: 79 LERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137 L RFG R SPRQ+D M+VAGT+ +KMA L+RVYDQM EP+YV++MGSCA GG + Sbjct: 77 LARFGMEVTRNSPRQADTMVVAGTIVHKMAPLLKRVYDQMAEPKYVVAMGSCAISGGPFV 136 Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 SY VV+G D I+PVD+YVPGCPP EAL YG++ LQ+KI+ Sbjct: 137 DSYHVVKGIDEIIPVDVYVPGCPPRPEALFYGLMQLQRKIK 177 >gi|121534363|ref|ZP_01666187.1| NADH-quinone oxidoreductase, B subunit [Thermosinus carboxydivorans Nor1] gi|121307133|gb|EAX48051.1| NADH-quinone oxidoreductase, B subunit [Thermosinus carboxydivorans Nor1] Length = 173 Score = 225 bits (573), Expect = 3e-57, Method: Composition-based stats. Identities = 88/155 (56%), Positives = 119/155 (76%), Gaps = 1/155 (0%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89 E+ K ++T+V+ +++WAR SL +T GLACCA+EMM A+ R+DL RFG+ R S Sbjct: 13 QELLAKNIILTTVETVLSWARGNSLWPLTSGLACCAIEMMCAASGRFDLARFGYEVFRPS 72 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQ+D++I AGTLT KMA L+R+Y+QMPEP+YVI+MGSCAN GG + SY+VV G D + Sbjct: 73 PRQADLLIAAGTLTWKMAPVLKRLYEQMPEPKYVIAMGSCANTGGPFADSYAVVPGVDYV 132 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 +PVD+Y+PGCPP EALI+GIL L++KI+ G VK Sbjct: 133 IPVDVYIPGCPPRPEALIHGILQLKRKIQNPGVVK 167 >gi|167646797|ref|YP_001684460.1| NADH dehydrogenase subunit B [Caulobacter sp. K31] gi|218527984|sp|B0SZ51|NUOB_CAUSK RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|167349227|gb|ABZ71962.1| NADH-quinone oxidoreductase, B subunit [Caulobacter sp. K31] Length = 196 Score = 225 bits (573), Expect = 3e-57, Method: Composition-based stats. Identities = 130/162 (80%), Positives = 146/162 (90%) Query: 23 DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82 D F +S ++ KGF+ + D L+TWARTGSLMWMTFGLACCAVEMM ++MPRYDLER+ Sbjct: 34 DPYFDGLSGQLADKGFVTAAADDLITWARTGSLMWMTFGLACCAVEMMHSAMPRYDLERY 93 Query: 83 GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142 GFAPRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYY+YSYSV Sbjct: 94 GFAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYYYSYSV 153 Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 VRGCDRIVP+DIYVPGCPPTAEAL+YG+L LQKKIRR G ++ Sbjct: 154 VRGCDRIVPIDIYVPGCPPTAEALVYGVLQLQKKIRRTGTIE 195 >gi|223936528|ref|ZP_03628439.1| NADH-quinone oxidoreductase, B subunit [bacterium Ellin514] gi|223894692|gb|EEF61142.1| NADH-quinone oxidoreductase, B subunit [bacterium Ellin514] Length = 203 Score = 224 bits (572), Expect = 3e-57, Method: Composition-based stats. Identities = 79/152 (51%), Positives = 109/152 (71%), Gaps = 1/152 (0%) Query: 27 SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA- 85 + +E++ +G TS++ L W R S+ M FGLACCA+EM+ +M RYDL RFG Sbjct: 3 EGLRNELSKQGIFTTSMEALYNWGRKNSVWPMQFGLACCAIEMIATTMARYDLARFGAEV 62 Query: 86 PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRG 145 R SPRQ+D+MIVAGT+T KMA + R+Y+QMPEP+YVI+MG+CA GG + Y+V++G Sbjct: 63 FRPSPRQADLMIVAGTVTKKMAPQVVRLYNQMPEPKYVIAMGACAISGGPFKQGYNVLKG 122 Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 DR +PVD+++PGCPP EALI + LQ+KI Sbjct: 123 IDRFIPVDVHIPGCPPRPEALIEAFMALQRKI 154 >gi|161784196|ref|YP_001595512.1| ndhK protein [Lemna minor] gi|88696774|gb|ABD48499.1| ndhK protein [Lemna minor] Length = 243 Score = 224 bits (572), Expect = 3e-57, Method: Composition-based stats. Identities = 69/151 (45%), Positives = 102/151 (67%), Gaps = 1/151 (0%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP 90 + + T+++ L W+R SL + +G +CC +E R+D +R+G PR+SP Sbjct: 28 DQTMPNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFAALIGSRFDFDRYGLVPRSSP 87 Query: 91 RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGCDRI 149 RQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D++ Sbjct: 88 RQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKL 147 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 +PVD+Y+PGCPP EA+I I L+KKI R Sbjct: 148 IPVDVYLPGCPPKPEAVIDAITKLRKKISRE 178 >gi|153807451|ref|ZP_01960119.1| hypothetical protein BACCAC_01731 [Bacteroides caccae ATCC 43185] gi|149129813|gb|EDM21025.1| hypothetical protein BACCAC_01731 [Bacteroides caccae ATCC 43185] Length = 200 Score = 224 bits (572), Expect = 3e-57, Method: Composition-based stats. Identities = 73/160 (45%), Positives = 107/160 (66%), Gaps = 3/160 (1%) Query: 22 VDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDL 79 + ++ E+ G + +D + W R+ SL +TF +CC +E M RYD+ Sbjct: 19 DNESLEKLVRELNAGGANVALGVLDDFINWGRSNSLWPLTFATSCCGIEFMALGAARYDM 78 Query: 80 ERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY 138 RFGF RASPRQ+D+++V GT+TNKMA L+R+YDQMP+P+YV+++G CA GG + Sbjct: 79 ARFGFEVARASPRQADMIMVCGTITNKMAPVLKRLYDQMPDPKYVVAVGGCAVSGGPFKK 138 Query: 139 SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 SY VV G D+I+PVD+Y+PGCPP EA YG++ LQ+K++ Sbjct: 139 SYHVVNGVDKILPVDVYIPGCPPRPEAFYYGMMQLQRKVK 178 >gi|328950032|ref|YP_004367367.1| NAD(P)H-quinone oxidoreductase subunit K [Marinithermus hydrothermalis DSM 14884] gi|328450356|gb|AEB11257.1| NAD(P)H-quinone oxidoreductase subunit K [Marinithermus hydrothermalis DSM 14884] Length = 179 Score = 224 bits (572), Expect = 3e-57, Method: Composition-based stats. Identities = 87/154 (56%), Positives = 115/154 (74%), Gaps = 2/154 (1%) Query: 26 FSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA 85 F R E+ +G T++++LV W R+ SL TFGLACCA+EMM ++ R DL RFG Sbjct: 7 FERDVQELERQGVFFTTLEKLVAWGRSNSLWPATFGLACCAIEMMASTDARNDLARFGSE 66 Query: 86 -PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR 144 RASPRQ+DVMIVAG L+ KMA +RRVYDQMP+P++VISMG+CA+ GG ++ Y++V+ Sbjct: 67 VFRASPRQADVMIVAGRLSKKMAPVMRRVYDQMPDPKWVISMGACASSGGMFNN-YAIVQ 125 Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 D +VPVD++VPGCPP EALIY ++ LQKKIR Sbjct: 126 NVDSVVPVDVFVPGCPPRPEALIYAVMQLQKKIR 159 >gi|242310555|ref|ZP_04809710.1| NADH dehydrogenase I [Helicobacter pullorum MIT 98-5489] gi|239522953|gb|EEQ62819.1| NADH dehydrogenase I [Helicobacter pullorum MIT 98-5489] Length = 176 Score = 224 bits (572), Expect = 3e-57, Method: Composition-based stats. Identities = 85/147 (57%), Positives = 112/147 (76%), Gaps = 1/147 (0%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 +TS+D+L+ W R+ SL MT+GLACCA+EMM RYD +RFG RASPRQSDVMI Sbjct: 23 IALTSLDKLINWGRSNSLWAMTYGLACCAIEMMATGASRYDFDRFGTIFRASPRQSDVMI 82 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 +AGT+T K A +RR+YDQMPEP++VISMGSCAN GG ++ +Y+ V+G DRI+PVDIY+P Sbjct: 83 IAGTVTKKHAQFVRRLYDQMPEPKWVISMGSCANTGGMFN-TYATVQGVDRIIPVDIYLP 141 Query: 158 GCPPTAEALIYGILLLQKKIRRVGNVK 184 GC P E L Y +++LQ+KIR+ + Sbjct: 142 GCSPRPETLQYALMVLQQKIRKEKANR 168 >gi|123965561|ref|YP_001010642.1| NADH dehydrogenase subunit B [Prochlorococcus marinus str. MIT 9515] gi|218527921|sp|A2BUS4|NDHK_PROM5 RecName: Full=NAD(P)H-quinone oxidoreductase subunit K; AltName: Full=NAD(P)H dehydrogenase I subunit K; AltName: Full=NDH-1 subunit K; Short=NDH-K gi|123199927|gb|ABM71535.1| putative respiratory-chain NADH dehydrogenase subunit [Prochlorococcus marinus str. MIT 9515] Length = 244 Score = 224 bits (572), Expect = 3e-57, Method: Composition-based stats. Identities = 71/152 (46%), Positives = 104/152 (68%), Gaps = 1/152 (0%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93 + ++TS+D L WAR SL + +G ACC +E R+D +RFG PR+SPRQ+ Sbjct: 30 LSENIIMTSLDDLHNWARLSSLWPLLYGTACCFIEFAALIGSRFDFDRFGLVPRSSPRQA 89 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGCDRIVPV 152 D++IVAGT+T KMA AL R+Y+QMPEP+YVI+MG+C GG + S + VRG D+++PV Sbjct: 90 DLLIVAGTVTMKMAPALVRLYEQMPEPKYVIAMGACTITGGMFSADSTTAVRGVDKLIPV 149 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 D+Y+PGCPP EA+ ++ L+KK+ ++ Sbjct: 150 DLYLPGCPPRPEAIFDAVIKLRKKVGNESILE 181 >gi|67925382|ref|ZP_00518732.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit [Crocosphaera watsonii WH 8501] gi|67852778|gb|EAM48187.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit [Crocosphaera watsonii WH 8501] Length = 247 Score = 224 bits (572), Expect = 3e-57, Method: Composition-based stats. Identities = 75/181 (41%), Positives = 113/181 (62%), Gaps = 2/181 (1%) Query: 1 MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTF 60 M L T + Q A S+++ +++ ++T+VD L WAR SL + + Sbjct: 1 MSLNTTSDPSAFEQLQKEKILNPAARSQVTQDLSE-NIILTTVDDLHNWARLSSLWPLLY 59 Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 G ACC +E R+D +RFG PR+SPRQ+D++I AGT+T KMA AL R+Y++MP+P Sbjct: 60 GTACCFIEFAALIGSRFDFDRFGLVPRSSPRQADLLITAGTVTMKMAPALVRLYEEMPDP 119 Query: 121 RYVISMGSCANGGGYY-HYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179 +YVI+MG+C GG + S + VRG D+++PVD+Y+PGCPP EA+ I+ L+KK+ Sbjct: 120 KYVIAMGACTITGGMFSSDSTTAVRGVDKLIPVDVYIPGCPPRPEAIFDAIIKLRKKVSN 179 Query: 180 V 180 Sbjct: 180 E 180 >gi|78043958|ref|YP_360256.1| NADH dehydrogenase subunit B [Carboxydothermus hydrogenoformans Z-2901] gi|123576172|sp|Q3AC78|NUOB_CARHZ RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|77996073|gb|ABB14972.1| proton-translocating NADH-quinone oxidoreductase, B subunit [Carboxydothermus hydrogenoformans Z-2901] Length = 166 Score = 224 bits (572), Expect = 4e-57, Method: Composition-based stats. Identities = 80/160 (50%), Positives = 108/160 (67%), Gaps = 1/160 (0%) Query: 26 FSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA 85 ++ K +T++D + WAR SL +TFGLACCA+E+M A P+YD RFG+ Sbjct: 6 IQSEEEKLIGKNVFLTTLDAVFNWARGNSLWPLTFGLACCAIEVMAAGGPKYDFSRFGYE 65 Query: 86 P-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR 144 R SPR +D+MIVAGT+T KM + R+Y+QM EP+YVI+MGSCA GG + SY VV Sbjct: 66 VWRPSPRHADLMIVAGTITKKMQPLVLRLYEQMAEPKYVIAMGSCAISGGPFVDSYHVVP 125 Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 G + +PVD+Y+PGCPP EAL+YG L L++KI+ VK Sbjct: 126 GANTFLPVDVYIPGCPPRPEALLYGWLELKRKIQNPRVVK 165 >gi|154282161|ref|XP_001541893.1| NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial precursor [Ajellomyces capsulatus NAm1] gi|150412072|gb|EDN07460.1| NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial precursor [Ajellomyces capsulatus NAm1] Length = 242 Score = 224 bits (572), Expect = 4e-57, Method: Composition-based stats. Identities = 98/173 (56%), Positives = 125/173 (72%) Query: 4 TTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLA 63 T + + +E+ + + G + S+D + WAR GSL ++ GLA Sbjct: 56 ITPRENTANVPDVARMERNASLLPSQDEKTGAMGHFLGSIDAVTNWARQGSLWPVSLGLA 115 Query: 64 CCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYV 123 CC VEMM SMPRYD +R G RASPRQSD++IVAGT+TNKMA ALR VYDQMP+P++V Sbjct: 116 CCGVEMMAVSMPRYDQDRLGTIFRASPRQSDLLIVAGTVTNKMAPALRLVYDQMPDPKWV 175 Query: 124 ISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKK 176 ISMGSCANGGGYYHYSYSVVRG DR++PVD+++PGCPPTAEAL+Y + +L+KK Sbjct: 176 ISMGSCANGGGYYHYSYSVVRGVDRLLPVDLFLPGCPPTAEALLYAMAVLRKK 228 >gi|224026051|ref|ZP_03644417.1| hypothetical protein BACCOPRO_02804 [Bacteroides coprophilus DSM 18228] gi|224019287|gb|EEF77285.1| hypothetical protein BACCOPRO_02804 [Bacteroides coprophilus DSM 18228] Length = 200 Score = 224 bits (572), Expect = 4e-57, Method: Composition-based stats. Identities = 77/161 (47%), Positives = 110/161 (68%), Gaps = 3/161 (1%) Query: 21 KVDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78 K + R+ E+ G ++ ++D+L+ W R+ SL +TFG +CCA+E M RYD Sbjct: 17 KNNDYLQRMVDELNRDGAGIIIGTIDELIEWGRSNSLWSLTFGTSCCAIEFMALGAARYD 76 Query: 79 LERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137 + RFGF R SPRQ+D+++V GT+T KMA L+R+YDQM EP+YVI++G C GG + Sbjct: 77 MARFGFEVTRNSPRQADMIMVLGTITYKMAPVLKRLYDQMAEPKYVIAVGGCTISGGPFI 136 Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 SY VV G D+I+PVD+Y+PGCPP EA YG++ LQ+KI+ Sbjct: 137 KSYHVVNGIDKIIPVDVYIPGCPPRPEAFYYGMMQLQRKIK 177 >gi|198276152|ref|ZP_03208683.1| hypothetical protein BACPLE_02341 [Bacteroides plebeius DSM 17135] gi|198270964|gb|EDY95234.1| hypothetical protein BACPLE_02341 [Bacteroides plebeius DSM 17135] Length = 193 Score = 224 bits (572), Expect = 4e-57, Method: Composition-based stats. Identities = 74/143 (51%), Positives = 105/143 (73%), Gaps = 1/143 (0%) Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95 G ++ +VD+L+ W R+ SL +TFG +CCA+E M RYD+ RFGF R SPRQ+D+ Sbjct: 36 GIVLGTVDELINWGRSNSLWSLTFGTSCCAIEFMALGAARYDMARFGFEVTRNSPRQADM 95 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155 ++V GT+T+KMA L+R+YDQM EP+YV+++G C GG + SY VV G D+I+PVD+Y Sbjct: 96 IMVLGTITHKMAPVLKRLYDQMAEPKYVVAVGGCTISGGPFIKSYHVVNGIDKIIPVDVY 155 Query: 156 VPGCPPTAEALIYGILLLQKKIR 178 +PGCPP EA YG++ LQ+KI+ Sbjct: 156 IPGCPPRPEAFFYGMMQLQRKIK 178 >gi|32399383|emb|CAD28725.1| photosystem II G protein [Calycanthus floridus var. glaucus] Length = 248 Score = 224 bits (572), Expect = 4e-57, Method: Composition-based stats. Identities = 74/177 (41%), Positives = 111/177 (62%), Gaps = 2/177 (1%) Query: 5 TVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLAC 64 + NQ G+ S +F + T + T+++ L W+R SL + +G +C Sbjct: 8 SDNQNQKEGKDSIETVMNSTEFPLL-DRTTQNSVISTTLNDLSNWSRLSSLWPLLYGTSC 66 Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E R+D +R+G PR+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI Sbjct: 67 CFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVI 126 Query: 125 SMGSCANGGGYYH-YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 +MG+C GG + SYS VRG D+++PVD+Y+PGCPP EA+I I L+KK+ R Sbjct: 127 AMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKKVSRE 183 >gi|218527963|sp|A9L9A0|NDHK_LEMMI RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K Length = 225 Score = 224 bits (572), Expect = 4e-57, Method: Composition-based stats. Identities = 69/151 (45%), Positives = 102/151 (67%), Gaps = 1/151 (0%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP 90 + + T+++ L W+R SL + +G +CC +E R+D +R+G PR+SP Sbjct: 10 DQTMPNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFAALIGSRFDFDRYGLVPRSSP 69 Query: 91 RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGCDRI 149 RQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D++ Sbjct: 70 RQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKL 129 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 +PVD+Y+PGCPP EA+I I L+KKI R Sbjct: 130 IPVDVYLPGCPPKPEAVIDAITKLRKKISRE 160 >gi|91214129|ref|YP_538751.1| NADH dehydrogenase subunit K [Glycine max] gi|88984614|sp|P31175|NDHK_SOYBN RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K gi|83595730|gb|ABC25111.1| NADH-plastoquinone oxidoreductase subunit K [Glycine max] Length = 212 Score = 224 bits (571), Expect = 4e-57, Method: Composition-based stats. Identities = 70/154 (45%), Positives = 104/154 (67%), Gaps = 1/154 (0%) Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87 + + T + T+++ L W+R SL + +G +CC +E R+D +R+G PR Sbjct: 7 PLLDQTTKNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66 Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146 +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG Sbjct: 67 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126 Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 D+++PVD+Y+PGCPP EA+I I L+KKI R Sbjct: 127 DKLIPVDVYLPGCPPKPEAIIDAITKLRKKISRE 160 >gi|295086644|emb|CBK68167.1| NADH dehydrogenase subunit B [Bacteroides xylanisolvens XB1A] Length = 195 Score = 224 bits (571), Expect = 4e-57, Method: Composition-based stats. Identities = 73/160 (45%), Positives = 107/160 (66%), Gaps = 3/160 (1%) Query: 22 VDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDL 79 + ++ E+ G + +D + W R+ SL +TF +CC +E M RYD+ Sbjct: 19 DNESLEKLVKELNAGGANVALGVLDDFINWGRSNSLWPLTFATSCCGIEFMALGAARYDM 78 Query: 80 ERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY 138 RFGF RASPRQ+D+++V GT+TNKMA L+R+YDQMP+P+YV+++G CA GG + Sbjct: 79 ARFGFEVARASPRQADMIMVCGTITNKMAPVLKRLYDQMPDPKYVVAVGGCAVSGGPFKK 138 Query: 139 SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 SY VV G D+I+PVD+Y+PGCPP EA YG++ LQ+K++ Sbjct: 139 SYHVVNGVDKILPVDVYIPGCPPRPEAFYYGMMQLQRKVK 178 >gi|317503351|ref|ZP_07961398.1| NADH-quinone oxidoreductase subunit B [Prevotella salivae DSM 15606] gi|315665530|gb|EFV05150.1| NADH-quinone oxidoreductase subunit B [Prevotella salivae DSM 15606] Length = 240 Score = 224 bits (571), Expect = 5e-57, Method: Composition-based stats. Identities = 75/161 (46%), Positives = 111/161 (68%), Gaps = 3/161 (1%) Query: 21 KVDADFSRISSEITHKGF--LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78 K + +I+ E+ G +V S+DQ + W R+ SL +TFG +CC +E M RYD Sbjct: 17 KDNDTLEKITKELNEGGVNVIVGSLDQAINWGRSNSLWSLTFGTSCCGIEFMAVGCARYD 76 Query: 79 LERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137 RFGF R SPRQ+D+++ AGT+TNKMA +R+YD++ EP+YV+++G C GG + Sbjct: 77 FSRFGFEVTRNSPRQADLIMCAGTITNKMAPVFKRLYDEIAEPKYVVAVGGCTISGGPFK 136 Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 SY+VVRG D +VPVD+Y+PGCPP EA++YG++ LQ+K++ Sbjct: 137 KSYNVVRGIDELVPVDVYIPGCPPRPEAILYGMMQLQRKVK 177 >gi|189468077|ref|ZP_03016862.1| hypothetical protein BACINT_04471 [Bacteroides intestinalis DSM 17393] gi|189436341|gb|EDV05326.1| hypothetical protein BACINT_04471 [Bacteroides intestinalis DSM 17393] Length = 199 Score = 224 bits (571), Expect = 5e-57, Method: Composition-based stats. Identities = 73/160 (45%), Positives = 107/160 (66%), Gaps = 3/160 (1%) Query: 22 VDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDL 79 + ++ E+ G + +D + W R+ SL +TF +CC +E M RYD+ Sbjct: 19 DNETLEKLVRELNAGGANVALGVLDDFINWGRSNSLWPLTFATSCCGIEFMALGAARYDM 78 Query: 80 ERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY 138 RFGF RASPRQ+D+++V GT+TNKMA L+R+YDQMP+P+YV+++G CA GG + Sbjct: 79 ARFGFEVARASPRQADMIMVCGTITNKMAPVLKRLYDQMPDPKYVVAVGGCAVSGGPFKK 138 Query: 139 SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 SY VV G D+I+PVD+Y+PGCPP EA YG++ LQ+K++ Sbjct: 139 SYHVVNGVDKILPVDVYIPGCPPRPEAFYYGMMQLQRKVK 178 >gi|186685599|ref|YP_001868795.1| NADH dehydrogenase subunit B [Nostoc punctiforme PCC 73102] gi|218527915|sp|B2J6S6|NDHK_NOSP7 RecName: Full=NAD(P)H-quinone oxidoreductase subunit K; AltName: Full=NAD(P)H dehydrogenase I subunit K; AltName: Full=NDH-1 subunit K; Short=NDH-K gi|186468051|gb|ACC83852.1| NADH-quinone oxidoreductase, B subunit [Nostoc punctiforme PCC 73102] Length = 245 Score = 224 bits (571), Expect = 5e-57, Method: Composition-based stats. Identities = 74/176 (42%), Positives = 113/176 (64%), Gaps = 4/176 (2%) Query: 6 VNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACC 65 +N + + + ++ + ++ +++ ++T+VD L WAR SL + FG ACC Sbjct: 3 LNSNLTTQDKQRIINPIER--TNVTQDLSE-NVILTTVDDLYDWARLSSLWPLLFGTACC 59 Query: 66 AVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVIS 125 +E R+D +RFG PR+SPRQ+D++I AGT+T KMA L R+Y+QMPEP+YVI+ Sbjct: 60 FIEFAALIGSRFDFDRFGLIPRSSPRQADLIITAGTITMKMAPQLVRLYEQMPEPKYVIA 119 Query: 126 MGSCANGGGYYH-YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 MG+C GG + S + VRG D+++PVD+Y+PGCPP EA+I I+ L+KKI Sbjct: 120 MGACTITGGMFSVDSPTAVRGVDKLIPVDVYLPGCPPRPEAIIDAIIKLRKKISNE 175 >gi|78778680|ref|YP_396792.1| NADH dehydrogenase subunit B [Prochlorococcus marinus str. MIT 9312] gi|123554667|sp|Q31CN9|NDHK_PROM9 RecName: Full=NAD(P)H-quinone oxidoreductase subunit K; AltName: Full=NAD(P)H dehydrogenase I subunit K; AltName: Full=NDH-1 subunit K; Short=NDH-K gi|78712179|gb|ABB49356.1| NADH dehydrogenase subunit B [Prochlorococcus marinus str. MIT 9312] Length = 244 Score = 224 bits (571), Expect = 5e-57, Method: Composition-based stats. Identities = 71/152 (46%), Positives = 104/152 (68%), Gaps = 1/152 (0%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93 + ++TS+D L WAR SL + +G ACC +E R+D +RFG PR+SPRQ+ Sbjct: 30 LSENIILTSLDDLHNWARLSSLWPLLYGTACCFIEFAALIGSRFDFDRFGLVPRSSPRQA 89 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGCDRIVPV 152 D++IVAGT+T KMA AL R+Y+QMPEP+YVI+MG+C GG + S + VRG D+++PV Sbjct: 90 DLLIVAGTVTMKMAPALVRLYEQMPEPKYVIAMGACTITGGMFSADSTTAVRGVDKLIPV 149 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 D+Y+PGCPP EA+ ++ L+KK+ ++ Sbjct: 150 DLYLPGCPPRPEAIFDAVIKLRKKVGNESILE 181 >gi|189459784|ref|ZP_03008569.1| hypothetical protein BACCOP_00413 [Bacteroides coprocola DSM 17136] gi|189433513|gb|EDV02498.1| hypothetical protein BACCOP_00413 [Bacteroides coprocola DSM 17136] Length = 200 Score = 224 bits (571), Expect = 5e-57, Method: Composition-based stats. Identities = 78/161 (48%), Positives = 110/161 (68%), Gaps = 3/161 (1%) Query: 21 KVDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78 K + R+ E+ G ++ +VDQL+ W R+ SL +TFG +CCA+E M RYD Sbjct: 17 KNNDYLQRMVDELNRDGAGVVIGTVDQLIEWGRSNSLWSLTFGTSCCAIEFMALGAARYD 76 Query: 79 LERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137 + RFGF R SPRQ+D+++V GT+T KMA L+R+YDQM EP+YV+++G C GG + Sbjct: 77 MARFGFEVTRNSPRQADMIMVLGTITYKMAPVLKRLYDQMAEPKYVVAVGGCTISGGPFI 136 Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 SY VV G D+I+PVD+Y+PGCPP EA YG++ LQ+KI+ Sbjct: 137 KSYHVVNGIDKIIPVDVYIPGCPPRPEAFYYGMMQLQRKIK 177 >gi|332826700|gb|EGJ99522.1| NADH-quinone oxidoreductase subunit B [Dysgonomonas gadei ATCC BAA-286] Length = 197 Score = 224 bits (571), Expect = 5e-57, Method: Composition-based stats. Identities = 79/161 (49%), Positives = 107/161 (66%), Gaps = 3/161 (1%) Query: 21 KVDADFSRISSEITHKGF--LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78 K + E+ G +V +D L+ W R+ S+ + F +CC +E M ++ RYD Sbjct: 24 KDNEYLEDYIKELNENGVPVVVGKLDDLINWGRSNSVWPLAFATSCCGIEFMASAAARYD 83 Query: 79 LERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137 L RFG R SPRQ+D M+VAGT+ +KMA L+RVYDQM EP+YV++MGSCA GG + Sbjct: 84 LARFGMEVTRNSPRQADTMVVAGTIVHKMAPLLKRVYDQMAEPKYVVAMGSCAISGGPFV 143 Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 SY VV+G D I+PVD+YVPGCPP EAL YG++ LQ+KI+ Sbjct: 144 DSYHVVKGIDEIMPVDVYVPGCPPRPEALFYGLMQLQRKIK 184 >gi|332255974|ref|XP_003277096.1| PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial-like [Nomascus leucogenys] Length = 156 Score = 224 bits (571), Expect = 5e-57, Method: Composition-based stats. Identities = 111/149 (74%), Positives = 124/149 (83%), Gaps = 5/149 (3%) Query: 36 KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDV 95 +G+ +T L SL MTFGLACCAVEMM + PRYD++RFG RASPRQSDV Sbjct: 8 RGWRLTRARPL-----QSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQSDV 62 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155 MIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY Sbjct: 63 MIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 122 Query: 156 VPGCPPTAEALIYGILLLQKKIRRVGNVK 184 +PGCPPTAEAL+YGIL LQ+KI+R ++ Sbjct: 123 IPGCPPTAEALLYGILQLQRKIKRERRLQ 151 >gi|193237723|dbj|BAG50130.1| NADH dehydrogenase 27 kD subunit [Takakia lepidozioides] Length = 257 Score = 224 bits (571), Expect = 5e-57, Method: Composition-based stats. Identities = 70/160 (43%), Positives = 107/160 (66%), Gaps = 1/160 (0%) Query: 22 VDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLER 81 +++ S + + ++T+ + WAR SL + +G +CC +E R+D +R Sbjct: 22 INSIESSLLDQTIPNSIILTTFNDFSNWARLSSLWPLLYGTSCCFIEFASLIGSRFDFDR 81 Query: 82 FGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSY 140 +G PR+SPRQ+D++I AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SY Sbjct: 82 YGLVPRSSPRQADLVITAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSY 141 Query: 141 SVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 S VRG D+++PVDIY+PGCPP EA+I I+ L+KK+ + Sbjct: 142 STVRGVDKLIPVDIYLPGCPPKPEAIIDAIIKLRKKVAQE 181 >gi|193237704|dbj|BAG50114.1| NADH dehydrogenase 27 kD subunit [Takakia lepidozioides] Length = 259 Score = 224 bits (571), Expect = 5e-57, Method: Composition-based stats. Identities = 70/160 (43%), Positives = 107/160 (66%), Gaps = 1/160 (0%) Query: 22 VDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLER 81 +++ S + + ++T+ + WAR SL + +G +CC +E R+D +R Sbjct: 22 INSIESSLLDQTIPNSIILTTFNDFSNWARLSSLWPLLYGTSCCFIEFASLIGSRFDFDR 81 Query: 82 FGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSY 140 +G PR+SPRQ+D++I AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SY Sbjct: 82 YGLVPRSSPRQADLVITAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSY 141 Query: 141 SVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 S VRG D+++PVDIY+PGCPP EA+I I+ L+KK+ + Sbjct: 142 STVRGVDKLIPVDIYLPGCPPKPEAIIDAIIKLRKKVAQE 181 >gi|17231333|ref|NP_487881.1| NADH dehydrogenase subunit B [Nostoc sp. PCC 7120] gi|20141594|sp|Q44240|NDHK_ANASP RecName: Full=NAD(P)H-quinone oxidoreductase subunit K; AltName: Full=NAD(P)H dehydrogenase I subunit K; AltName: Full=NDH-1 subunit K; Short=NDH-K gi|17132975|dbj|BAB75540.1| NADH dehydrogenase chain K [Nostoc sp. PCC 7120] Length = 245 Score = 224 bits (571), Expect = 5e-57, Method: Composition-based stats. Identities = 74/173 (42%), Positives = 110/173 (63%), Gaps = 4/173 (2%) Query: 6 VNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACC 65 +N + + + ++ ++ + ++T+VD L WAR SL + FG ACC Sbjct: 3 LNSDLTTQDKERIINPIERP---TITQDLSENVILTTVDDLYNWARLSSLWPLLFGTACC 59 Query: 66 AVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVIS 125 +E R+D +RFG PR+SPRQ+D++I AGT+T KMA L R+Y+QMPEP+YVI+ Sbjct: 60 FIEFAALIGSRFDFDRFGLIPRSSPRQADLIITAGTITMKMAPQLVRLYEQMPEPKYVIA 119 Query: 126 MGSCANGGGYYH-YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 MG+C GG + S + VRG D+++PVD+Y+PGCPP EA+I I+ L+KKI Sbjct: 120 MGACTITGGMFSVDSPTAVRGVDKLIPVDVYLPGCPPRPEAIIDAIIKLRKKI 172 >gi|313145380|ref|ZP_07807573.1| trifunctional NADH dehydrogenase I subunit B/C/D [Bacteroides fragilis 3_1_12] gi|313134147|gb|EFR51507.1| trifunctional NADH dehydrogenase I subunit B/C/D [Bacteroides fragilis 3_1_12] Length = 203 Score = 224 bits (571), Expect = 5e-57, Method: Composition-based stats. Identities = 75/160 (46%), Positives = 107/160 (66%), Gaps = 3/160 (1%) Query: 22 VDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDL 79 + ++ E+ G V +D L+ W R+ SL +TF +CC +E M RYD+ Sbjct: 26 DNESLEKMVKELNEGGANVFVGVLDDLINWGRSNSLWPLTFATSCCGIEFMALGAARYDM 85 Query: 80 ERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY 138 RFGF RASPRQ+D+++V GT+TNKMA L+R+YDQM +P+YVI++G CA GG + Sbjct: 86 ARFGFEVARASPRQADMIMVCGTITNKMAPVLKRLYDQMADPKYVIAVGGCAVSGGPFRK 145 Query: 139 SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 SY VV G D+I+PVD+Y+PGCPP EA YG++ LQ+K++ Sbjct: 146 SYHVVNGVDKILPVDVYIPGCPPRPEAFYYGMMQLQRKVK 185 >gi|118430392|ref|YP_874657.1| NADH-plastoquinone oxidoreductase subunit K [Hordeum vulgare subsp. vulgare] gi|29367118|gb|AAO72306.1| NdhK [Hordeum vulgare] gi|118201046|gb|ABK79417.1| NADH-plastoquinone oxidoreductase subunit K [Hordeum vulgare subsp. vulgare] Length = 245 Score = 224 bits (571), Expect = 5e-57, Method: Composition-based stats. Identities = 75/181 (41%), Positives = 113/181 (62%), Gaps = 2/181 (1%) Query: 1 MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTF 60 M LT K G+ S +F + + + + T+++ L W+R SL + + Sbjct: 1 MVLTEYLDKKKEGKDSIETVMNLIEFPLL-DQTSSNSVISTTLNDLSNWSRLSSLWPLLY 59 Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 G +CC +E R+D +R+G PR+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP Sbjct: 60 GTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEP 119 Query: 121 RYVISMGSCANGGGYYH-YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179 +YVI+MG+C GG + SYS VRG D+++PVD+Y+PGCPP EA+I + L+KKI R Sbjct: 120 KYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEAVIDALTKLRKKISR 179 Query: 180 V 180 Sbjct: 180 E 180 >gi|193216261|ref|YP_001997460.1| NADH dehydrogenase subunit B [Chloroherpeton thalassium ATCC 35110] gi|238065031|sp|B3QY47|NUOB2_CHLT3 RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName: Full=NADH dehydrogenase I subunit B 2; AltName: Full=NDH-1 subunit B 2 gi|193089738|gb|ACF15013.1| NADH-quinone oxidoreductase, B subunit [Chloroherpeton thalassium ATCC 35110] Length = 195 Score = 224 bits (570), Expect = 5e-57, Method: Composition-based stats. Identities = 87/154 (56%), Positives = 112/154 (72%), Gaps = 1/154 (0%) Query: 29 ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88 + + G ++T+ + ++ WAR SL M FGLACCA+EMM + YDLERFG PR+ Sbjct: 4 LDQKFDKGGVVITAAENVLNWARLSSLWPMGFGLACCAIEMMATNASNYDLERFGIFPRS 63 Query: 89 SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCD 147 SPRQSD+MIVAGT+T KMA + R+Y+QMPEPRYV+SMGSC+N GG Y Y VV+G D Sbjct: 64 SPRQSDLMIVAGTVTFKMAERVVRLYEQMPEPRYVLSMGSCSNCGGPYWEHGYHVVKGVD 123 Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181 RI+PVD+YVPGCPP EALI G++ +Q+ IR Sbjct: 124 RIIPVDVYVPGCPPRPEALIGGLMKVQELIREEK 157 >gi|11467814|ref|NP_050865.1| NADH dehydrogenase subunit K [Nephroselmis olivacea] gi|59798437|sp|Q9TKY0|NDHK_NEPOL RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K gi|5880743|gb|AAD54836.1|AF137379_59 subunit K of NADH-ubiquinone oxidoreductase [Nephroselmis olivacea] Length = 237 Score = 224 bits (570), Expect = 5e-57, Method: Composition-based stats. Identities = 74/176 (42%), Positives = 115/176 (65%), Gaps = 2/176 (1%) Query: 10 IISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEM 69 +IS S+ S I+ E+ + ++T+++ L WAR SL + +G +CC +E Sbjct: 2 VISSLSNSQPLNAPVSSSPITQELAN-NLILTTLNDLYNWARLSSLWPLLYGTSCCFIEF 60 Query: 70 MQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSC 129 R+D +RFG PR+SPRQ+D++I AGT+T KMA +L R+Y+QMP+P+YVI+MG+C Sbjct: 61 ACLIGSRFDFDRFGLVPRSSPRQADLIITAGTVTMKMAPSLVRLYEQMPDPKYVIAMGAC 120 Query: 130 ANGGGYYH-YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 GG + SYS VRG D+++PVD+Y+PGCPP EA+I ++ L+KK+ + + Sbjct: 121 TITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEAIIDAVIKLRKKVAQEQTAE 176 >gi|254526480|ref|ZP_05138532.1| NADH dehydrogenase i chain b or ndhk [Prochlorococcus marinus str. MIT 9202] gi|221537904|gb|EEE40357.1| NADH dehydrogenase i chain b or ndhk [Prochlorococcus marinus str. MIT 9202] Length = 241 Score = 224 bits (570), Expect = 6e-57, Method: Composition-based stats. Identities = 71/152 (46%), Positives = 104/152 (68%), Gaps = 1/152 (0%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93 + ++TS+D L WAR SL + +G ACC +E R+D +RFG PR+SPRQ+ Sbjct: 30 LSENIILTSLDDLHNWARLSSLWPLLYGTACCFIEFAALIGSRFDFDRFGLVPRSSPRQA 89 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGCDRIVPV 152 D++IVAGT+T KMA AL R+Y+QMPEP+YVI+MG+C GG + S + VRG D+++PV Sbjct: 90 DLLIVAGTVTMKMAPALVRLYEQMPEPKYVIAMGACTITGGMFSADSTTAVRGVDKLIPV 149 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 D+Y+PGCPP EA+ ++ L+KK+ ++ Sbjct: 150 DLYLPGCPPRPEAIFDAVIKLRKKVGNESILE 181 >gi|226355360|ref|YP_002785100.1| NADH dehydrogenase subunit B [Deinococcus deserti VCD115] gi|259514659|sp|C1D0H2|NUOB_DEIDV RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|226317350|gb|ACO45346.1| putative NADH dehydrogenase (quinone), subunit B (NADH-quinone oxidoreductase, subunit B) [Deinococcus deserti VCD115] Length = 178 Score = 224 bits (570), Expect = 6e-57, Method: Composition-based stats. Identities = 86/154 (55%), Positives = 116/154 (75%), Gaps = 2/154 (1%) Query: 26 FSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA 85 F R E+ +G L +++++LV W R+ SL TFGLACCA+EMM ++ R D+ RFG Sbjct: 7 FDRDWQELESEGILFSNLEKLVAWGRSNSLWPATFGLACCAIEMMSSTNARNDMARFGSE 66 Query: 86 -PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR 144 RASPRQ+DVMIVAG L+ KMA +RRVYDQMP+P++VI+MG+CA+ GG ++ Y++V+ Sbjct: 67 VFRASPRQADVMIVAGRLSKKMAPVMRRVYDQMPDPKWVIAMGACASSGGMFNN-YAIVQ 125 Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 D +VPVDIYVPGCPP EALIY ++ LQKK+R Sbjct: 126 NVDSVVPVDIYVPGCPPRPEALIYAVMQLQKKVR 159 >gi|157325534|ref|YP_001468312.1| NADH dehydrogenase subunit K [Ipomoea purpurea] gi|218527909|sp|A7Y3E1|NDHK_IPOPU RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K gi|157056762|gb|ABV02352.1| NADH-plastoquinone oxidoreductase subunit K [Ipomoea purpurea] Length = 235 Score = 224 bits (570), Expect = 6e-57, Method: Composition-based stats. Identities = 69/160 (43%), Positives = 105/160 (65%), Gaps = 1/160 (0%) Query: 22 VDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLER 81 +++ + + T+++ L W+R SL + +G +CC +E R+D +R Sbjct: 1 MNSIQFPLLDRTAKNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDR 60 Query: 82 FGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSY 140 +G PR+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SY Sbjct: 61 YGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSY 120 Query: 141 SVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 S VRG D+++PVD+Y+PGCPP EA+I I L+KKI R Sbjct: 121 STVRGVDKLIPVDVYLPGCPPKPEAIIDAITKLRKKISRE 160 >gi|148657099|ref|YP_001277304.1| NADH dehydrogenase subunit B [Roseiflexus sp. RS-1] gi|238065018|sp|A5UXK1|NUOB1_ROSS1 RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName: Full=NADH dehydrogenase I subunit B 1; AltName: Full=NDH-1 subunit B 1 gi|148569209|gb|ABQ91354.1| NADH-quinone oxidoreductase, B subunit [Roseiflexus sp. RS-1] Length = 268 Score = 224 bits (570), Expect = 6e-57, Method: Composition-based stats. Identities = 82/164 (50%), Positives = 115/164 (70%), Gaps = 3/164 (1%) Query: 24 ADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFG 83 +D I E G +T++ + W R S+ ++FGLACCA+EMM + R+DL RFG Sbjct: 2 SDDREIQLEAEKHGVFLTTMQRFYNWGRRSSIWPLSFGLACCAIEMMATGLARFDLARFG 61 Query: 84 FA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142 RASPRQ+D+MIVAGT+T KMA + R+Y+QMPEPRYVISMG+CA GG + Y+V Sbjct: 62 AEMFRASPRQADLMIVAGTVTKKMAPQVVRLYNQMPEPRYVISMGACATSGGPFRDGYNV 121 Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI--RRVGNVK 184 +RG D ++PVD+Y+PGCPP EAL++ ++ LQK+I +R+ V+ Sbjct: 122 LRGIDLLIPVDVYIPGCPPRPEALLHALMTLQKQIDAQRLNQVR 165 >gi|167841106|ref|ZP_02467790.1| NADH dehydrogenase subunit B [Burkholderia thailandensis MSMB43] Length = 167 Score = 224 bits (570), Expect = 6e-57, Method: Composition-based stats. Identities = 108/151 (71%), Positives = 126/151 (83%) Query: 32 EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPR 91 + GF+VT++D + A+ SL +MTFGLACCAVEMM A+ RYD++RFG PRASPR Sbjct: 7 TLEKDGFIVTTLDAAMAAAQKNSLWYMTFGLACCAVEMMHAAGARYDMDRFGMIPRASPR 66 Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151 Q D+MIVAGTLTNKMA A+RRVYDQM EPRYV+SMGSCANGGGYYHYSYSVVRGCDRIVP Sbjct: 67 QCDLMIVAGTLTNKMAPAMRRVYDQMAEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVP 126 Query: 152 VDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182 VDIYVPGCPPTAEAL+YG++ LQ+K+ Sbjct: 127 VDIYVPGCPPTAEALVYGLMQLQRKVAERST 157 >gi|300087933|ref|YP_003758455.1| NADH-quinone oxidoreductase subunit B [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299527666|gb|ADJ26134.1| NADH-quinone oxidoreductase, B subunit [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 203 Score = 224 bits (570), Expect = 6e-57, Method: Composition-based stats. Identities = 81/157 (51%), Positives = 115/157 (73%), Gaps = 1/157 (0%) Query: 29 ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APR 87 ++ + L+TSVD++V W+R S+ +TFGLACCA+EMM + R+DL RFG R Sbjct: 42 LNEDALPPNVLLTSVDKVVNWSRRYSMWPVTFGLACCAIEMMSMAASRFDLARFGMEIFR 101 Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCD 147 ASPRQ+D+MI+AGTLT KMA LRR+YDQMP+P++V++MGSC GG ++ SY+VV G + Sbjct: 102 ASPRQADLMIIAGTLTWKMAPWLRRIYDQMPDPKWVVAMGSCGISGGLFNDSYAVVPGFN 161 Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 R+VPVD+YVPGCPP EAL+ I+ + K+ ++ + Sbjct: 162 RVVPVDVYVPGCPPRPEALMQAIMDIHAKVDKMSPTR 198 >gi|157412655|ref|YP_001483521.1| NADH dehydrogenase subunit B [Prochlorococcus marinus str. MIT 9215] gi|218527918|sp|A8G2V4|NDHK_PROM2 RecName: Full=NAD(P)H-quinone oxidoreductase subunit K; AltName: Full=NAD(P)H dehydrogenase I subunit K; AltName: Full=NDH-1 subunit K; Short=NDH-K gi|157387230|gb|ABV49935.1| putative respiratory-chain NADH dehydrogenase subunit [Prochlorococcus marinus str. MIT 9215] Length = 241 Score = 224 bits (570), Expect = 6e-57, Method: Composition-based stats. Identities = 71/152 (46%), Positives = 104/152 (68%), Gaps = 1/152 (0%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93 + ++TS+D L WAR SL + +G ACC +E R+D +RFG PR+SPRQ+ Sbjct: 30 LSENIILTSLDDLHNWARLSSLWPLLYGTACCFIEFAALIGSRFDFDRFGLVPRSSPRQA 89 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGCDRIVPV 152 D++IVAGT+T KMA AL R+Y+QMPEP+YVI+MG+C GG + S + VRG D+++PV Sbjct: 90 DLLIVAGTVTMKMAPALVRLYEQMPEPKYVIAMGACTITGGMFSADSTTAVRGVDKLIPV 149 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 D+Y+PGCPP EA+ ++ L+KK+ ++ Sbjct: 150 DLYLPGCPPRPEAIFDAVIKLRKKVGNESILE 181 >gi|166363918|ref|YP_001656191.1| NADH dehydrogenase subunit B [Microcystis aeruginosa NIES-843] gi|218527913|sp|B0JSV5|NDHK_MICAN RecName: Full=NAD(P)H-quinone oxidoreductase subunit K; AltName: Full=NAD(P)H dehydrogenase I subunit K; AltName: Full=NDH-1 subunit K; Short=NDH-K gi|166086291|dbj|BAG00999.1| NADH dehydrogenase subunit [Microcystis aeruginosa NIES-843] Length = 247 Score = 224 bits (570), Expect = 6e-57, Method: Composition-based stats. Identities = 78/175 (44%), Positives = 119/175 (68%), Gaps = 4/175 (2%) Query: 4 TTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLA 63 T+ ++II QS L ++ ++++ +++ ++T+VD L WAR SL M +G A Sbjct: 6 TSEFKQIIEQQSEKILNPIER--TKVTQDLSE-NVILTTVDDLYNWARLSSLWPMLYGTA 62 Query: 64 CCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYV 123 CC +E R+D +RFG PR+SPRQ+D++I AGT+T KMA AL R+Y++MPEP+YV Sbjct: 63 CCFIEFAALIGSRFDFDRFGLVPRSSPRQADLIITAGTITMKMAPALVRLYEEMPEPKYV 122 Query: 124 ISMGSCANGGGYY-HYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 I+MG+C GG + S + VRG D+++PVD+Y+PGCPP EA+I I+ L+KK+ Sbjct: 123 IAMGACTITGGMFSSDSTTAVRGVDKLIPVDVYIPGCPPRPEAIIDAIIKLRKKV 177 >gi|298490489|ref|YP_003720666.1| NADH-quinone oxidoreductase subunit B ['Nostoc azollae' 0708] gi|298232407|gb|ADI63543.1| NADH-quinone oxidoreductase, B subunit ['Nostoc azollae' 0708] Length = 244 Score = 224 bits (570), Expect = 6e-57, Method: Composition-based stats. Identities = 76/173 (43%), Positives = 112/173 (64%), Gaps = 4/173 (2%) Query: 6 VNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACC 65 +N I + + ++ ++ E++ ++T+VD L WAR SL + FG ACC Sbjct: 3 LNSNITTQDKELIINPIERPT--VTQELSE-NVILTTVDDLYNWARLSSLWPLLFGTACC 59 Query: 66 AVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVIS 125 +E R+D +RFG PR+SPRQ+D++I AGT+T KMA L R+Y+QMPEP+YVI+ Sbjct: 60 FIEFAALIGSRFDFDRFGLIPRSSPRQADLIITAGTITMKMAPQLVRLYEQMPEPKYVIA 119 Query: 126 MGSCANGGGYYH-YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 MG+C GG + S + VRG D+++PVD+Y+PGCPP EA+I I+ L+KKI Sbjct: 120 MGACTITGGMFSVDSPTAVRGVDKLIPVDVYLPGCPPRPEAIIDAIIKLRKKI 172 >gi|126442009|ref|YP_001060575.1| putative NADH-quinone oxidoreductase, B subunit [Burkholderia pseudomallei 668] gi|126221502|gb|ABN85008.1| putative NADH-quinone oxidoreductase, B subunit [Burkholderia pseudomallei 668] Length = 297 Score = 224 bits (570), Expect = 6e-57, Method: Composition-based stats. Identities = 107/151 (70%), Positives = 126/151 (83%) Query: 32 EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPR 91 + GF+VT++D + A+ SL +MTFGLACCAVEMM A+ RYD++RFG PRASPR Sbjct: 137 TLEKDGFIVTTLDAAMAAAQKNSLWYMTFGLACCAVEMMHAAGARYDMDRFGMIPRASPR 196 Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151 Q D+MIVAGTLTNKMA A+RRVYDQM EPRYV+SMGSCANGGGYYHYSYSVVRGCDRIVP Sbjct: 197 QCDLMIVAGTLTNKMAPAMRRVYDQMAEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVP 256 Query: 152 VDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182 VD+YVPGCPPTAEAL+YG++ LQ+K+ Sbjct: 257 VDVYVPGCPPTAEALVYGLMQLQRKVAERST 287 >gi|78188613|ref|YP_378951.1| NADH dehydrogenase subunit B [Chlorobium chlorochromatii CaD3] gi|123580176|sp|Q3ASW7|NUOB_CHLCH RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|78170812|gb|ABB27908.1| NADH dehydrogenase subunit B [Chlorobium chlorochromatii CaD3] Length = 190 Score = 224 bits (570), Expect = 6e-57, Method: Composition-based stats. Identities = 90/147 (61%), Positives = 113/147 (76%), Gaps = 1/147 (0%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 IT+ LVTSVD ++ WAR SL M FGLACCA+EMM + YDLERFG PR+SPRQ Sbjct: 8 ITNHNVLVTSVDNVLNWARLSSLWPMGFGLACCAIEMMATNASNYDLERFGIFPRSSPRQ 67 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVP 151 SD+M+VAGT+T KMA + R+Y+QMPEPRYV+SMGSC+N GG Y Y V++G DRI+P Sbjct: 68 SDLMLVAGTVTMKMAERVIRLYEQMPEPRYVLSMGSCSNSGGPYWEHGYHVLKGVDRIIP 127 Query: 152 VDIYVPGCPPTAEALIYGILLLQKKIR 178 VD+YVPGCPP E+LI G++ +Q+ IR Sbjct: 128 VDVYVPGCPPRPESLIGGLMKVQELIR 154 >gi|325996536|gb|ADZ51941.1| NADH-ubiquinone oxidoreductase chain B [Helicobacter pylori 2018] gi|325998125|gb|ADZ50333.1| NADH-ubiquinone oxidoreductase chain B [Helicobacter pylori 2017] Length = 159 Score = 224 bits (570), Expect = 6e-57, Method: Composition-based stats. Identities = 85/147 (57%), Positives = 113/147 (76%), Gaps = 1/147 (0%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 +++++D+L+ W R+ SL +T+GLACCA+EMM R+D +RFG RASPRQSDVMI Sbjct: 6 VILSTLDKLLNWGRSNSLWPLTYGLACCAIEMMATGGSRFDFDRFGTIFRASPRQSDVMI 65 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 +AGTLT K A +RR+YDQMPEP++VISMGSCAN GG ++ +Y+ V+G DRIVPVDIY+P Sbjct: 66 IAGTLTKKHAEFMRRLYDQMPEPKWVISMGSCANTGGMFN-TYATVQGADRIVPVDIYLP 124 Query: 158 GCPPTAEALIYGILLLQKKIRRVGNVK 184 GC P E L Y +++LQ KIRR +K Sbjct: 125 GCAPRPETLQYALMVLQDKIRRSKAIK 151 >gi|295136982|ref|YP_003587528.1| NADH dehydrogenase subunit K [Pisum sativum] gi|293338554|gb|ADE43527.1| NADH dehydrogenase subunit K [Pisum sativum] Length = 227 Score = 224 bits (570), Expect = 7e-57, Method: Composition-based stats. Identities = 70/154 (45%), Positives = 104/154 (67%), Gaps = 1/154 (0%) Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87 + + T + T+++ L W+R SL + +G +CC +E R+D +R+G PR Sbjct: 7 PLLDQKTKNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66 Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146 +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG Sbjct: 67 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126 Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 D+++PVD+Y+PGCPP EA+I I L+KKI R Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 160 >gi|255007685|ref|ZP_05279811.1| NADH-quinone oxidoreductase chain B [Bacteroides fragilis 3_1_12] Length = 196 Score = 224 bits (570), Expect = 7e-57, Method: Composition-based stats. Identities = 75/160 (46%), Positives = 107/160 (66%), Gaps = 3/160 (1%) Query: 22 VDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDL 79 + ++ E+ G V +D L+ W R+ SL +TF +CC +E M RYD+ Sbjct: 19 DNESLEKMVKELNEGGANVFVGVLDDLINWGRSNSLWPLTFATSCCGIEFMALGAARYDM 78 Query: 80 ERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY 138 RFGF RASPRQ+D+++V GT+TNKMA L+R+YDQM +P+YVI++G CA GG + Sbjct: 79 ARFGFEVARASPRQADMIMVCGTITNKMAPVLKRLYDQMADPKYVIAVGGCAVSGGPFRK 138 Query: 139 SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 SY VV G D+I+PVD+Y+PGCPP EA YG++ LQ+K++ Sbjct: 139 SYHVVNGVDKILPVDVYIPGCPPRPEAFYYGMMQLQRKVK 178 >gi|15612247|ref|NP_223900.1| NADH dehydrogenase subunit B [Helicobacter pylori J99] gi|81625872|sp|Q9ZJW6|NUOB_HELPJ RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|4155792|gb|AAD06768.1| NADH oxidoreductase I [Helicobacter pylori J99] gi|308064039|gb|ADO05926.1| NADH dehydrogenase subunit B [Helicobacter pylori Sat464] Length = 159 Score = 224 bits (570), Expect = 7e-57, Method: Composition-based stats. Identities = 84/147 (57%), Positives = 113/147 (76%), Gaps = 1/147 (0%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 +++++D+L+ W R+ SL +T+GLACCA+EMM R+D +RFG RASPRQSDVMI Sbjct: 6 VILSTLDKLLNWGRSNSLWPLTYGLACCAIEMMATGGSRFDFDRFGTIFRASPRQSDVMI 65 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 +AGTLT K A +RR+YDQMPEP++VISMGSCAN GG ++ +Y+ V+G DR+VPVDIY+P Sbjct: 66 IAGTLTKKHAEFMRRLYDQMPEPKWVISMGSCANTGGMFN-TYATVQGADRVVPVDIYLP 124 Query: 158 GCPPTAEALIYGILLLQKKIRRVGNVK 184 GC P E L Y +++LQ KIRR +K Sbjct: 125 GCAPRPETLQYALMVLQDKIRRSKAIK 151 >gi|238065051|sp|B3ET80|NUOB_AMOA5 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B Length = 160 Score = 224 bits (570), Expect = 7e-57, Method: Composition-based stats. Identities = 93/154 (60%), Positives = 115/154 (74%), Gaps = 1/154 (0%) Query: 26 FSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA 85 IS++ G ++ +++ L+ WA SL +TFGLACCA+EMM A YDL+R G Sbjct: 1 MDTISNKTGEGGVIMVALEDLLNWAERSSLWPITFGLACCAIEMMGAYASHYDLDRLGVI 60 Query: 86 PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVR 144 PR SPRQ+DVMIV+GT+T KMA ++RR+YDQMPEPRYVISMGSCAN GG Y Y VV+ Sbjct: 61 PRNSPRQADVMIVSGTVTFKMADSIRRLYDQMPEPRYVISMGSCANCGGPYWQHGYHVVK 120 Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 G DRI+PVD+YVPGCPP EALI GIL LQ+KI+ Sbjct: 121 GVDRIIPVDVYVPGCPPRPEALIGGILKLQEKIK 154 >gi|284928645|ref|YP_003421167.1| NADH dehydrogenase subunit B [cyanobacterium UCYN-A] gi|284809104|gb|ADB94809.1| NADH dehydrogenase subunit B [cyanobacterium UCYN-A] Length = 247 Score = 223 bits (569), Expect = 7e-57, Method: Composition-based stats. Identities = 73/180 (40%), Positives = 113/180 (62%), Gaps = 5/180 (2%) Query: 6 VNQKIISGQSSCSLEKVDADFSRIS----SEITHKGFLVTSVDQLVTWARTGSLMWMTFG 61 +NQ + S+ + + + IS ++ + ++T+VD L WAR SL + +G Sbjct: 1 MNQNLTPDLSTIEQSQKEKVLNPISPGNITQDLSENIILTTVDDLHNWARLSSLWPLLYG 60 Query: 62 LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPR 121 ACC +E R+D +RFG PR SPRQ+D+++VAGT+T KMA AL R+Y++MP P+ Sbjct: 61 TACCFIEFAALIGSRFDFDRFGLVPRCSPRQADLLLVAGTVTMKMAPALVRLYEEMPSPK 120 Query: 122 YVISMGSCANGGGYY-HYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 YVI+MG+C GG + S + VRG D+++PVD+Y+PGCPP EA+ ++ L+KK+ Sbjct: 121 YVIAMGACTITGGMFSRDSTTTVRGVDKLIPVDVYIPGCPPRPEAIFDAVIKLRKKVSNE 180 >gi|109946844|ref|YP_664072.1| NADH dehydrogenase subunit B [Helicobacter acinonychis str. Sheeba] gi|122973434|sp|Q17Z53|NUOB_HELAH RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|109714065|emb|CAJ99073.1| NADH dehydrogenase I chain B [Helicobacter acinonychis str. Sheeba] gi|317011461|gb|ADU85208.1| NADH dehydrogenase subunit B [Helicobacter pylori SouthAfrica7] Length = 159 Score = 223 bits (569), Expect = 7e-57, Method: Composition-based stats. Identities = 84/147 (57%), Positives = 113/147 (76%), Gaps = 1/147 (0%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 +++++D+L+ W R+ SL +T+GLACCA+EMM R+D +RFG RASPRQSDVMI Sbjct: 6 VVLSTLDKLLNWGRSNSLWPLTYGLACCAIEMMATGGSRFDFDRFGTIFRASPRQSDVMI 65 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 +AGTLT K A +RR+YDQMPEP++VISMGSCAN GG ++ +Y+ V+G DRI+PVDIY+P Sbjct: 66 IAGTLTKKHAEFMRRLYDQMPEPKWVISMGSCANTGGMFN-TYATVQGADRIIPVDIYLP 124 Query: 158 GCPPTAEALIYGILLLQKKIRRVGNVK 184 GC P E L Y +++LQ KIRR +K Sbjct: 125 GCAPRPETLQYALMVLQDKIRRSKAIK 151 >gi|73921507|sp|O98679|NDHK_PEA RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K gi|4138389|emb|CAA06191.1| NADH-plastoquinone oxidoreductase subunit, NdhK [Pisum sativum] Length = 227 Score = 223 bits (569), Expect = 7e-57, Method: Composition-based stats. Identities = 70/154 (45%), Positives = 104/154 (67%), Gaps = 1/154 (0%) Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87 + + T + T+++ L W+R SL + +G +CC +E R+D +R+G PR Sbjct: 7 PLLDQKTKNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66 Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146 +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG Sbjct: 67 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126 Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 D+++PVD+Y+PGCPP EA+I I L+KKI R Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 160 >gi|322378681|ref|ZP_08053114.1| Donor-ubiquinone reductase I [Helicobacter suis HS1] gi|322380176|ref|ZP_08054411.1| NADH dehydrogenase subunit B [Helicobacter suis HS5] gi|321147391|gb|EFX42056.1| NADH dehydrogenase subunit B [Helicobacter suis HS5] gi|321148898|gb|EFX43365.1| Donor-ubiquinone reductase I [Helicobacter suis HS1] Length = 196 Score = 223 bits (569), Expect = 7e-57, Method: Composition-based stats. Identities = 83/146 (56%), Positives = 110/146 (75%), Gaps = 1/146 (0%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 ++S+D+L+ W R+ SL +T+GLACCA+EMM R+D +RFG RASPRQSDVMI Sbjct: 43 IALSSLDRLLNWGRSNSLWPLTYGLACCAIEMMATGGSRFDFDRFGTIFRASPRQSDVMI 102 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 +AGTLT K A RR+YDQMPEP++VISMGSCAN GG ++ +Y+ V+G DR++PVDIY+P Sbjct: 103 IAGTLTKKHAEFTRRLYDQMPEPKWVISMGSCANTGGMFN-TYATVQGVDRVIPVDIYLP 161 Query: 158 GCPPTAEALIYGILLLQKKIRRVGNV 183 GC P E L Y +++LQ KIRR + Sbjct: 162 GCAPRPETLQYALMVLQDKIRRQKAL 187 >gi|330850634|ref|YP_004376515.1| NADH-plastoquinone oxidoreductase subunit K [Ptilidium pulcherrimum] gi|302024763|gb|ADK89609.1| NADH-plastoquinone oxidoreductase subunit K [Ptilidium pulcherrimum] Length = 250 Score = 223 bits (569), Expect = 7e-57, Method: Composition-based stats. Identities = 73/160 (45%), Positives = 107/160 (66%), Gaps = 2/160 (1%) Query: 22 VDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLER 81 D +FS + +T ++T+ + WAR SL + +G +CC +E R+D +R Sbjct: 24 SDIEFSLFNKTVTD-SIILTTFNDFSNWARLSSLWPLLYGTSCCFIEFASLIGSRFDFDR 82 Query: 82 FGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSY 140 +G PR+SPRQ+D++I AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SY Sbjct: 83 YGLVPRSSPRQADLIITAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSY 142 Query: 141 SVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 + VRG D+++PVDIY+PGCPP EA+I I L+KKI + Sbjct: 143 TTVRGVDKLIPVDIYLPGCPPKPEAIIDAITKLRKKIAQE 182 >gi|5139325|emb|CAB45640.1| NDH-K protein [Nostoc sp. PCC 7120] Length = 245 Score = 223 bits (569), Expect = 7e-57, Method: Composition-based stats. Identities = 73/173 (42%), Positives = 110/173 (63%), Gaps = 4/173 (2%) Query: 6 VNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACC 65 +N + + + ++ ++ + ++T+VD L WAR SL + FG ACC Sbjct: 3 LNSDLTTQDKERIINPIERP---TITQDLSENVILTTVDDLYNWARLSSLWPLLFGTACC 59 Query: 66 AVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVIS 125 +E R+D +RFG PR+SPRQ+D++I AGT+T KMA L R+Y+QMPEP+YVI+ Sbjct: 60 FIEFAALIGSRFDFDRFGLIPRSSPRQADLIITAGTITMKMAPQLVRLYEQMPEPKYVIA 119 Query: 126 MGSCANGGGYYH-YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 MG+C GG + S + VRG D+++PVD+Y+PGCPP EA+I ++ L+KKI Sbjct: 120 MGACTITGGMFSVDSPTAVRGVDKLIPVDVYLPGCPPRPEAIIDAMIKLRKKI 172 >gi|57234306|ref|YP_181649.1| proton-translocating NADH-quinone oxidoreductase, B subunit [Dehalococcoides ethenogenes 195] gi|123618656|sp|Q3Z800|NUOB_DEHE1 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|57224754|gb|AAW39811.1| proton-translocating NADH-quinone oxidoreductase, B subunit [Dehalococcoides ethenogenes 195] Length = 200 Score = 223 bits (569), Expect = 8e-57, Method: Composition-based stats. Identities = 86/177 (48%), Positives = 117/177 (66%), Gaps = 1/177 (0%) Query: 9 KIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVE 68 II + ++SE G VTSV++++ W+R SL + FGLACCA+E Sbjct: 23 GIIQSFRTGHTTPYPDPADWLNSEEPPPGVFVTSVEKVLNWSRHYSLWPVMFGLACCAIE 82 Query: 69 MMQASMPRYDLERFGF-APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMG 127 MM + R+DL RFG RASPRQ+D+MIVAGTLT KMA L+R+YDQMPEP++V++MG Sbjct: 83 MMCMAASRWDLARFGMDIFRASPRQADLMIVAGTLTWKMAPWLKRIYDQMPEPKWVLAMG 142 Query: 128 SCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 +C GG + SYSVV G + +VPVD+YVPGCPP EAL+ I+ + +KI + +K Sbjct: 143 ACGTSGGLFRDSYSVVPGFNMVVPVDVYVPGCPPRPEALLRAIMDIHEKIDKTRIIK 199 >gi|289065093|ref|YP_003433979.1| NADH-plastoquinone oxidoreductase subunit K [Typha latifolia] gi|281371776|gb|ADA63703.1| NADH-plastoquinone oxidoreductase subunit K [Typha latifolia] Length = 255 Score = 223 bits (569), Expect = 8e-57, Method: Composition-based stats. Identities = 76/182 (41%), Positives = 111/182 (60%), Gaps = 2/182 (1%) Query: 1 MGLTTVNQKIISGQSSCSLEKVDADFS-RISSEITHKGFLVTSVDQLVTWARTGSLMWMT 59 M LT + + +E V + E T + T+ + L W+R SL + Sbjct: 1 MVLTEYSDNKKKKEGKDYIETVMNLIEFPLLDETTPNSVISTTSNDLSNWSRLSSLWPLL 60 Query: 60 FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119 +G +CC +E R+D +R+G PR+SPRQ+D+++ AGT+T KMA +L R+Y+QMPE Sbjct: 61 YGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPE 120 Query: 120 PRYVISMGSCANGGGYYH-YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 P+YVI+MG+C GG + SYS VRG D+++PVD+Y+PGCPP EA+I I L+KKI Sbjct: 121 PKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKKIS 180 Query: 179 RV 180 R Sbjct: 181 RE 182 >gi|126695655|ref|YP_001090541.1| NADH dehydrogenase subunit B [Prochlorococcus marinus str. MIT 9301] gi|218527916|sp|A3PB15|NDHK_PROM0 RecName: Full=NAD(P)H-quinone oxidoreductase subunit K; AltName: Full=NAD(P)H dehydrogenase I subunit K; AltName: Full=NDH-1 subunit K; Short=NDH-K gi|126542698|gb|ABO16940.1| putative respiratory-chain NADH dehydrogenase subunit [Prochlorococcus marinus str. MIT 9301] Length = 244 Score = 223 bits (569), Expect = 8e-57, Method: Composition-based stats. Identities = 71/152 (46%), Positives = 104/152 (68%), Gaps = 1/152 (0%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93 + ++TS+D L WAR SL + +G ACC +E R+D +RFG PR+SPRQ+ Sbjct: 30 LSENIILTSLDDLHNWARLSSLWPLLYGTACCFIEFAALIGSRFDFDRFGLVPRSSPRQA 89 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGCDRIVPV 152 D++IVAGT+T KMA AL R+Y+QMPEP+YVI+MG+C GG + S + VRG D+++PV Sbjct: 90 DLLIVAGTVTMKMAPALVRLYEQMPEPKYVIAMGACTITGGMFSADSTTAVRGVDKLIPV 149 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 D+Y+PGCPP EA+ ++ L+KK+ ++ Sbjct: 150 DLYLPGCPPRPEAIFDAVIKLRKKVGNESILE 181 >gi|290489714|gb|ADD31241.1| NADH-plastoquinone oxidoreductase subunit K protein [Lonicera japonica] Length = 247 Score = 223 bits (569), Expect = 8e-57, Method: Composition-based stats. Identities = 73/165 (44%), Positives = 108/165 (65%), Gaps = 5/165 (3%) Query: 21 KVDADFSRIS----SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPR 76 K+D + I + T + T+++ L W+R SL + +G +CC +E R Sbjct: 18 KIDTVMNSIEFPLLDQTTQNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSR 77 Query: 77 YDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY 136 +D +R+G PR+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + Sbjct: 78 FDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMF 137 Query: 137 H-YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 SYS VRG D+++PVD+Y+PGCPP EA+I I L+KKI R Sbjct: 138 STDSYSTVRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 182 >gi|260885204|ref|ZP_05734514.2| NADH dehydrogenase I subunit B [Prevotella tannerae ATCC 51259] gi|260853160|gb|EEX73029.1| NADH dehydrogenase I subunit B [Prevotella tannerae ATCC 51259] Length = 214 Score = 223 bits (569), Expect = 8e-57, Method: Composition-based stats. Identities = 74/164 (45%), Positives = 111/164 (67%), Gaps = 3/164 (1%) Query: 21 KVDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78 K + + ++ +E+ G +V +D L+ W R+ SL +TF +CC +E M RYD Sbjct: 19 KDNETYEKLVAELNANGANVIVKPLDDLINWGRSNSLWPLTFATSCCGIEFMAVCAARYD 78 Query: 79 LERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137 + RFGF R SPRQ+DV++V+GT+TNKMA L+R+YDQM +P+YV+++G CA GG + Sbjct: 79 IARFGFEVTRNSPRQADVILVSGTITNKMAPVLKRLYDQMADPKYVVAIGGCATTGGPFV 138 Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181 SY VV+G D I+PV++YVPGCPP EA +YG++ LQ+ ++ Sbjct: 139 KSYHVVKGVDEIIPVNVYVPGCPPRPEAFLYGMMQLQRIVKAEN 182 >gi|53717370|ref|YP_105287.1| NADH dehydrogenase subunit B [Burkholderia mallei ATCC 23344] gi|53720672|ref|YP_109658.1| NADH dehydrogenase subunit B [Burkholderia pseudomallei K96243] gi|67640239|ref|ZP_00439053.1| NADH-quinone oxidoreductase chain b (nadh dehydrogenasei, chain b) (ndh-1, chain b) [Burkholderia mallei GB8 horse 4] gi|134283174|ref|ZP_01769875.1| putative NADH-quinone oxidoreductase, B subunit [Burkholderia pseudomallei 305] gi|167004154|ref|ZP_02269924.1| NADH-quinone oxidoreductase, B subunit [Burkholderia mallei PRL-20] gi|167721386|ref|ZP_02404622.1| NADH dehydrogenase subunit B [Burkholderia pseudomallei DM98] gi|167847462|ref|ZP_02472970.1| NADH dehydrogenase subunit B [Burkholderia pseudomallei B7210] gi|167904433|ref|ZP_02491638.1| NADH dehydrogenase subunit B [Burkholderia pseudomallei NCTC 13177] gi|242317299|ref|ZP_04816315.1| putative NADH-quinone oxidoreductase, B subunit [Burkholderia pseudomallei 1106b] gi|254175821|ref|ZP_04882480.1| NADH-quinone oxidoreductase, B subunit [Burkholderia mallei ATCC 10399] gi|254198551|ref|ZP_04904972.1| putative NADH-quinone oxidoreductase, B subunit [Burkholderia pseudomallei S13] gi|254203254|ref|ZP_04909616.1| NADH-quinone oxidoreductase, B subunit [Burkholderia mallei FMH] gi|254208590|ref|ZP_04914939.1| NADH-quinone oxidoreductase, B subunit [Burkholderia mallei JHU] gi|81607694|sp|Q63QG0|NUOB2_BURPS RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName: Full=NADH dehydrogenase I subunit B 2; AltName: Full=NDH-1 subunit B 2 gi|81684518|sp|Q62DE1|NUOB2_BURMA RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName: Full=NADH dehydrogenase I subunit B 2; AltName: Full=NDH-1 subunit B 2 gi|218528073|sp|A1UWB1|NUOB2_BURMS RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName: Full=NADH dehydrogenase I subunit B 2; AltName: Full=NDH-1 subunit B 2 gi|218528074|sp|A3NZQ8|NUOB2_BURP0 RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName: Full=NADH dehydrogenase I subunit B 2; AltName: Full=NDH-1 subunit B 2 gi|218528076|sp|A3NE04|NUOB2_BURP6 RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName: Full=NADH dehydrogenase I subunit B 2; AltName: Full=NDH-1 subunit B 2 gi|218528078|sp|A3MFR5|NUOB2_BURM7 RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName: Full=NADH dehydrogenase I subunit B 2; AltName: Full=NDH-1 subunit B 2 gi|218528079|sp|A2RYJ4|NUOB2_BURM9 RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName: Full=NADH dehydrogenase I subunit B 2; AltName: Full=NDH-1 subunit B 2 gi|52211086|emb|CAH37074.1| putative NADH dehydrogenase [Burkholderia pseudomallei K96243] gi|52423340|gb|AAU46910.1| NADH-quinone oxidoreductase, B subunit [Burkholderia mallei ATCC 23344] gi|134245369|gb|EBA45462.1| putative NADH-quinone oxidoreductase, B subunit [Burkholderia pseudomallei 305] gi|147746299|gb|EDK53377.1| NADH-quinone oxidoreductase, B subunit [Burkholderia mallei FMH] gi|147751277|gb|EDK58345.1| NADH-quinone oxidoreductase, B subunit [Burkholderia mallei JHU] gi|160696864|gb|EDP86834.1| NADH-quinone oxidoreductase, B subunit [Burkholderia mallei ATCC 10399] gi|169655291|gb|EDS87984.1| putative NADH-quinone oxidoreductase, B subunit [Burkholderia pseudomallei S13] gi|238520928|gb|EEP84384.1| NADH-quinone oxidoreductase chain b (nadh dehydrogenasei, chain b) (ndh-1, chain b) [Burkholderia mallei GB8 horse 4] gi|242140538|gb|EES26940.1| putative NADH-quinone oxidoreductase, B subunit [Burkholderia pseudomallei 1106b] gi|243060451|gb|EES42637.1| NADH-quinone oxidoreductase, B subunit [Burkholderia mallei PRL-20] Length = 167 Score = 223 bits (569), Expect = 8e-57, Method: Composition-based stats. Identities = 107/151 (70%), Positives = 126/151 (83%) Query: 32 EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPR 91 + GF+VT++D + A+ SL +MTFGLACCAVEMM A+ RYD++RFG PRASPR Sbjct: 7 TLEKDGFIVTTLDAAMAAAQKNSLWYMTFGLACCAVEMMHAAGARYDMDRFGMIPRASPR 66 Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151 Q D+MIVAGTLTNKMA A+RRVYDQM EPRYV+SMGSCANGGGYYHYSYSVVRGCDRIVP Sbjct: 67 QCDLMIVAGTLTNKMAPAMRRVYDQMAEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVP 126 Query: 152 VDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182 VD+YVPGCPPTAEAL+YG++ LQ+K+ Sbjct: 127 VDVYVPGCPPTAEALVYGLMQLQRKVAERST 157 >gi|290489742|gb|ADD31255.1| NADH-plastoquinone oxidoreductase subunit K protein [Plumbago auriculata] Length = 285 Score = 223 bits (569), Expect = 8e-57, Method: Composition-based stats. Identities = 73/172 (42%), Positives = 112/172 (65%), Gaps = 1/172 (0%) Query: 7 NQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCA 66 N K G+++ +++ + IT + T+++ L W+R SL + +G +CC Sbjct: 46 NNKQKKGKTNKIERVLNSIEFPLLDRITQNSVISTTLNDLSNWSRLSSLWPLLYGTSCCF 105 Query: 67 VEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISM 126 +E R+D +R+G PR+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+M Sbjct: 106 IEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAM 165 Query: 127 GSCANGGGYYH-YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 G+C GG + SYS VRG D+++PVD+Y+PGCPP EA+I I L+KKI Sbjct: 166 GACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKKI 217 >gi|53712161|ref|YP_098153.1| NADH dehydrogenase subunit B [Bacteroides fragilis YCH46] gi|60680345|ref|YP_210489.1| NADH dehydrogenase subunit B [Bacteroides fragilis NCTC 9343] gi|253563801|ref|ZP_04841258.1| NADH dehydrogenase I [Bacteroides sp. 3_2_5] gi|265765492|ref|ZP_06093767.1| NADH dehydrogenase I [Bacteroides sp. 2_1_16] gi|81316585|sp|Q5LH49|NUOB_BACFN RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|81608667|sp|Q64Y07|NUOB_BACFR RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|52215026|dbj|BAD47619.1| NADH dehydrogenase I chain B [Bacteroides fragilis YCH46] gi|60491779|emb|CAH06537.1| NADH-quinone oxidoreductase chain B [Bacteroides fragilis NCTC 9343] gi|251947577|gb|EES87859.1| NADH dehydrogenase I [Bacteroides sp. 3_2_5] gi|263254876|gb|EEZ26310.1| NADH dehydrogenase I [Bacteroides sp. 2_1_16] gi|301161878|emb|CBW21422.1| NADH-quinone oxidoreductase chain B [Bacteroides fragilis 638R] Length = 196 Score = 223 bits (569), Expect = 8e-57, Method: Composition-based stats. Identities = 75/160 (46%), Positives = 107/160 (66%), Gaps = 3/160 (1%) Query: 22 VDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDL 79 + ++ E+ G V +D L+ W R+ SL +TF +CC +E M RYD+ Sbjct: 19 DNESLEKMVKELNEGGANVFVGVLDDLINWGRSNSLWPLTFATSCCGIEFMALGAARYDM 78 Query: 80 ERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY 138 RFGF RASPRQ+D+++V GT+TNKMA L+R+YDQM +P+YVI++G CA GG + Sbjct: 79 ARFGFEVARASPRQADMIMVCGTITNKMAPVLKRLYDQMADPKYVIAVGGCAVSGGPFRK 138 Query: 139 SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 SY VV G D+I+PVD+Y+PGCPP EA YG++ LQ+K++ Sbjct: 139 SYHVVNGVDKILPVDVYIPGCPPRPEAFYYGMMQLQRKVK 178 >gi|218527893|sp|Q85XC3|NDHK_HORVU RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K Length = 225 Score = 223 bits (569), Expect = 9e-57, Method: Composition-based stats. Identities = 68/154 (44%), Positives = 104/154 (67%), Gaps = 1/154 (0%) Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87 + + + + T+++ L W+R SL + +G +CC +E R+D +R+G PR Sbjct: 7 PLLDQTSSNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66 Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146 +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG Sbjct: 67 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126 Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 D+++PVD+Y+PGCPP EA+I + L+KKI R Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDALTKLRKKISRE 160 >gi|14423817|sp|Q9MUR0|NDHK_MESVI RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K gi|7259539|gb|AAF43840.1|AF166114_52 subunit K of NADH-ubiquinone oxidoreductase [Mesostigma viride] Length = 247 Score = 223 bits (569), Expect = 9e-57, Method: Composition-based stats. Identities = 71/174 (40%), Positives = 117/174 (67%), Gaps = 2/174 (1%) Query: 12 SGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQ 71 + ++ L + + +++ ++++ ++T+++ L WAR SL + +G +CC +E Sbjct: 13 NSDTNERLINYNIEKPQVTQNVSNQ-LILTTLNDLYNWARLSSLWPLLYGTSCCFIEFAC 71 Query: 72 ASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCAN 131 R+D +RFG PR SPRQ+D++I AGT+T KMA +L R+Y+QMPEP+YVI+MG+C Sbjct: 72 LLGSRFDFDRFGLVPRCSPRQADLIITAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTI 131 Query: 132 GGGYYH-YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 GG + SYS VRG D+++PVD+Y+PGCPP EA+I ++ L+KK+ + V+ Sbjct: 132 TGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEAIIDAVIKLRKKVAQENLVE 185 >gi|325280124|ref|YP_004252666.1| NAD(P)H-quinone oxidoreductase subunit K [Odoribacter splanchnicus DSM 20712] gi|324311933|gb|ADY32486.1| NAD(P)H-quinone oxidoreductase subunit K [Odoribacter splanchnicus DSM 20712] Length = 201 Score = 223 bits (569), Expect = 9e-57, Method: Composition-based stats. Identities = 80/171 (46%), Positives = 112/171 (65%), Gaps = 3/171 (1%) Query: 11 ISGQSSCSLEKVDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVE 68 + S++ D + ++ G +V +D L+ W R+ S+ +TF +CC +E Sbjct: 1 MKQPKIKSMKYEDFKDNEYLEQLRANGTDIIVGCLDDLINWGRSNSVWPLTFATSCCGIE 60 Query: 69 MMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMG 127 M RYD RFGF RASPRQ+DV+IVAGT+ KMA LRR+YDQM EP+YVI+MG Sbjct: 61 FMAVGAARYDFARFGFEVTRASPRQADVIIVAGTIVYKMAPVLRRLYDQMAEPKYVIAMG 120 Query: 128 SCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 CA GG + SY VV+G ++I+PVD+YVPGCPP E+L+YG++ LQ+KI+ Sbjct: 121 GCAISGGPFKKSYHVVKGVNQILPVDVYVPGCPPRPESLLYGMMQLQRKIK 171 >gi|72383495|ref|YP_292850.1| NADH dehydrogenase subunit B [Prochlorococcus marinus str. NATL2A] gi|123621504|sp|Q46M05|NDHK_PROMT RecName: Full=NAD(P)H-quinone oxidoreductase subunit K; AltName: Full=NAD(P)H dehydrogenase I subunit K; AltName: Full=NDH-1 subunit K; Short=NDH-K gi|72003345|gb|AAZ59147.1| NADH dehydrogenase subunit B [Prochlorococcus marinus str. NATL2A] Length = 249 Score = 223 bits (569), Expect = 9e-57, Method: Composition-based stats. Identities = 69/145 (47%), Positives = 102/145 (70%), Gaps = 1/145 (0%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93 + ++TS++ L WAR SL + +G ACC +E R+D +RFG PR+SPRQ+ Sbjct: 35 LSENIILTSLEDLHNWARLSSLWPLLYGTACCFIEFAALIGSRFDFDRFGLVPRSSPRQA 94 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGCDRIVPV 152 D++IVAGT+T KMA AL R+Y+QMP+P+YVI+MG+C GG + S + VRG D+++PV Sbjct: 95 DLLIVAGTVTMKMAPALVRLYEQMPDPKYVIAMGACTITGGMFSADSTTAVRGVDKLIPV 154 Query: 153 DIYVPGCPPTAEALIYGILLLQKKI 177 D+Y+PGCPP EA+ ++ L+KK+ Sbjct: 155 DLYLPGCPPRPEAIFDAVIKLRKKV 179 >gi|153012225|ref|YP_001381740.1| NADH-plastoquinone oxidoreductase subunit K [Medicago truncatula] Length = 235 Score = 223 bits (569), Expect = 9e-57, Method: Composition-based stats. Identities = 70/154 (45%), Positives = 104/154 (67%), Gaps = 1/154 (0%) Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87 + + T + T+++ L W+R SL + +G +CC +E R+D +R+G PR Sbjct: 15 PLLDQKTKNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 74 Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146 +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG Sbjct: 75 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 134 Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 D+++PVD+Y+PGCPP EA+I I L+KKI R Sbjct: 135 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 168 >gi|156742064|ref|YP_001432193.1| NADH dehydrogenase subunit B [Roseiflexus castenholzii DSM 13941] gi|238065038|sp|A7NL05|NUOB2_ROSCS RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName: Full=NADH dehydrogenase I subunit B 2; AltName: Full=NDH-1 subunit B 2 gi|156233392|gb|ABU58175.1| NADH-quinone oxidoreductase, B subunit [Roseiflexus castenholzii DSM 13941] Length = 268 Score = 223 bits (568), Expect = 9e-57, Method: Composition-based stats. Identities = 82/164 (50%), Positives = 116/164 (70%), Gaps = 3/164 (1%) Query: 24 ADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFG 83 +D I E +G +T++ + W R S+ ++FGLACCA+EMM + R+DL RFG Sbjct: 2 SDDRDIQLEAEKQGVFLTTMQRFYNWGRRSSVWPLSFGLACCAIEMMATGLARFDLARFG 61 Query: 84 FA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142 RASPRQ+D+MIVAGT+T KMA + R+Y+QMPEPRYVISMG+CA GG + Y+V Sbjct: 62 AEMFRASPRQADLMIVAGTVTKKMAPQVVRLYNQMPEPRYVISMGACATSGGPFRDGYNV 121 Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI--RRVGNVK 184 +RG D ++PVD+Y+PGCPP EAL++ ++ LQK+I +R+ V+ Sbjct: 122 LRGIDLLIPVDVYIPGCPPRPEALLHALMTLQKQIDAQRLNRVR 165 >gi|208435155|ref|YP_002266821.1| NADH-ubiquinone oxidoreductase chain B [Helicobacter pylori G27] gi|210135420|ref|YP_002301859.1| NADH dehydrogenase subunit B [Helicobacter pylori P12] gi|217032322|ref|ZP_03437818.1| hypothetical protein HPB128_132g20 [Helicobacter pylori B128] gi|254779804|ref|YP_003057910.1| NADH dehydrogenase subunit B [Helicobacter pylori B38] gi|298735715|ref|YP_003728240.1| NADH dehydrogenase I subunit B [Helicobacter pylori B8] gi|308183371|ref|YP_003927498.1| NADH dehydrogenase subunit B [Helicobacter pylori PeCan4] gi|308185009|ref|YP_003929142.1| NADH dehydrogenase subunit B [Helicobacter pylori SJM180] gi|238065158|sp|B6JNA1|NUOB_HELP2 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|238065159|sp|B5Z8Q6|NUOB_HELPG RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|208433084|gb|ACI27955.1| NADH-ubiquinone oxidoreductase chain B [Helicobacter pylori G27] gi|210133388|gb|ACJ08379.1| NADH-ubiquinone oxidoreductase chain B [Helicobacter pylori P12] gi|216945988|gb|EEC24602.1| hypothetical protein HPB128_132g20 [Helicobacter pylori B128] gi|254001716|emb|CAX29947.1| NADH-ubiquinone oxidoreductase, NQO6 subunit [Helicobacter pylori B38] gi|261838584|gb|ACX98350.1| NADH-ubiquinone oxidoreductase chain B [Helicobacter pylori 51] gi|261839979|gb|ACX99744.1| NADH dehydrogenase subunit B [Helicobacter pylori 52] gi|298354904|emb|CBI65776.1| NADH dehydrogenase I chain B [Helicobacter pylori B8] gi|308060929|gb|ADO02825.1| NADH dehydrogenase subunit B [Helicobacter pylori SJM180] gi|308065556|gb|ADO07448.1| NADH dehydrogenase subunit B [Helicobacter pylori PeCan4] gi|317013049|gb|ADU83657.1| NADH dehydrogenase subunit B [Helicobacter pylori Lithuania75] gi|317014652|gb|ADU82088.1| NADH dehydrogenase subunit B [Helicobacter pylori Gambia94/24] Length = 159 Score = 223 bits (568), Expect = 9e-57, Method: Composition-based stats. Identities = 85/147 (57%), Positives = 113/147 (76%), Gaps = 1/147 (0%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 +++++D+L+ W R+ SL +T+GLACCA+EMM R+D +RFG RASPRQSDVMI Sbjct: 6 VVLSTLDKLLNWGRSNSLWPLTYGLACCAIEMMATGGSRFDFDRFGTIFRASPRQSDVMI 65 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 +AGTLT K A +RR+YDQMPEP++VISMGSCAN GG ++ +Y+ V+G DRIVPVDIY+P Sbjct: 66 IAGTLTKKHAEFMRRLYDQMPEPKWVISMGSCANTGGMFN-TYATVQGADRIVPVDIYLP 124 Query: 158 GCPPTAEALIYGILLLQKKIRRVGNVK 184 GC P E L Y +++LQ KIRR +K Sbjct: 125 GCAPRPETLQYALMVLQDKIRRSKAIK 151 >gi|296274502|ref|YP_003657133.1| NADH-quinone oxidoreductase subunit B [Arcobacter nitrofigilis DSM 7299] gi|296098676|gb|ADG94626.1| NADH-quinone oxidoreductase, B subunit [Arcobacter nitrofigilis DSM 7299] Length = 169 Score = 223 bits (568), Expect = 9e-57, Method: Composition-based stats. Identities = 82/145 (56%), Positives = 113/145 (77%), Gaps = 1/145 (0%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 +++VD++V + R+ SL +T+GLACCA+EMM + RYD +RFG RASPRQ+DV+I Sbjct: 16 IALSTVDKIVNFGRSNSLWPLTYGLACCAIEMMASGASRYDFDRFGTIFRASPRQADVLI 75 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGTLT K A +RR+YDQMP+P++VISMGSCAN GG ++ +Y+ V+G DR++PVDIY+P Sbjct: 76 VAGTLTKKHAEYMRRLYDQMPDPKWVISMGSCANTGGMFN-TYATVQGVDRVIPVDIYLP 134 Query: 158 GCPPTAEALIYGILLLQKKIRRVGN 182 GC P E L Y +++LQKKIRR + Sbjct: 135 GCAPRPETLQYALMMLQKKIRRESS 159 >gi|15645875|ref|NP_208053.1| NADH dehydrogenase subunit B [Helicobacter pylori 26695] gi|108563630|ref|YP_627946.1| NADH dehydrogenase subunit B [Helicobacter pylori HPAG1] gi|188528050|ref|YP_001910737.1| NADH dehydrogenase subunit B [Helicobacter pylori Shi470] gi|207091614|ref|ZP_03239401.1| NADH dehydrogenase subunit B [Helicobacter pylori HPKX_438_AG0C1] gi|207108182|ref|ZP_03242344.1| NADH dehydrogenase subunit B [Helicobacter pylori HPKX_438_CA4C1] gi|217033582|ref|ZP_03439010.1| hypothetical protein HP9810_899g18 [Helicobacter pylori 98-10] gi|81555857|sp|O25851|NUOB_HELPY RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|123073732|sp|Q1CS00|NUOB_HELPH RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|238065160|sp|B2UV25|NUOB_HELPS RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|2314428|gb|AAD08307.1| NADH-ubiquinone oxidoreductase, NQO6 subunit (NQO6) [Helicobacter pylori 26695] gi|107837403|gb|ABF85272.1| NADH-ubiquinone oxidoreductase chain B [Helicobacter pylori HPAG1] gi|188144290|gb|ACD48707.1| NADH dehydrogenase subunit B [Helicobacter pylori Shi470] gi|216943928|gb|EEC23362.1| hypothetical protein HP9810_899g18 [Helicobacter pylori 98-10] gi|297380441|gb|ADI35328.1| NADH-quinone oxidoreductase, B subunit [Helicobacter pylori v225d] gi|308062545|gb|ADO04433.1| NADH dehydrogenase subunit B [Helicobacter pylori Cuz20] gi|315587152|gb|ADU41533.1| NADH-quinone oxidoreductase subunit B [Helicobacter pylori 35A] gi|317009945|gb|ADU80525.1| NADH dehydrogenase subunit B [Helicobacter pylori India7] gi|317178004|dbj|BAJ55793.1| NADH dehydrogenase subunit B [Helicobacter pylori F16] gi|317178445|dbj|BAJ56233.1| NADH dehydrogenase subunit B [Helicobacter pylori F30] gi|317180987|dbj|BAJ58773.1| NADH dehydrogenase subunit B [Helicobacter pylori F32] gi|317182510|dbj|BAJ60294.1| NADH dehydrogenase subunit B [Helicobacter pylori F57] gi|332674064|gb|AEE70881.1| NADH-quinone oxidoreductase subunit B [Helicobacter pylori 83] Length = 159 Score = 223 bits (568), Expect = 9e-57, Method: Composition-based stats. Identities = 84/147 (57%), Positives = 113/147 (76%), Gaps = 1/147 (0%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 +++++D+L+ W R+ SL +T+GLACCA+EMM R+D +RFG RASPRQSDVMI Sbjct: 6 VVLSTLDKLLNWGRSNSLWPLTYGLACCAIEMMATGGSRFDFDRFGTIFRASPRQSDVMI 65 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 +AGTLT K A +RR+YDQMPEP++VISMGSCAN GG ++ +Y+ V+G DR+VPVDIY+P Sbjct: 66 IAGTLTKKHAEFMRRLYDQMPEPKWVISMGSCANTGGMFN-TYATVQGADRVVPVDIYLP 124 Query: 158 GCPPTAEALIYGILLLQKKIRRVGNVK 184 GC P E L Y +++LQ KIRR +K Sbjct: 125 GCAPRPETLQYALMVLQDKIRRSKAIK 151 >gi|124025086|ref|YP_001014202.1| NADH dehydrogenase subunit B [Prochlorococcus marinus str. NATL1A] gi|218527917|sp|A2C0C7|NDHK_PROM1 RecName: Full=NAD(P)H-quinone oxidoreductase subunit K; AltName: Full=NAD(P)H dehydrogenase I subunit K; AltName: Full=NDH-1 subunit K; Short=NDH-K gi|123960154|gb|ABM74937.1| putative respiratory-chain NADH dehydrogenase subunit [Prochlorococcus marinus str. NATL1A] Length = 249 Score = 223 bits (568), Expect = 1e-56, Method: Composition-based stats. Identities = 69/145 (47%), Positives = 102/145 (70%), Gaps = 1/145 (0%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93 + ++TS++ L WAR SL + +G ACC +E R+D +RFG PR+SPRQ+ Sbjct: 35 LSENIILTSLEDLHNWARLSSLWPLLYGTACCFIEFAALIGSRFDFDRFGLVPRSSPRQA 94 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGCDRIVPV 152 D++IVAGT+T KMA AL R+Y+QMP+P+YVI+MG+C GG + S + VRG D+++PV Sbjct: 95 DLLIVAGTVTMKMAPALVRLYEQMPDPKYVIAMGACTITGGMFSADSTTAVRGVDKLIPV 154 Query: 153 DIYVPGCPPTAEALIYGILLLQKKI 177 D+Y+PGCPP EA+ ++ L+KK+ Sbjct: 155 DLYLPGCPPRPEAIFDAVIKLRKKV 179 >gi|91069905|gb|ABE10834.1| putative respiratory-chain NADH dehydrogenase subunit [uncultured Prochlorococcus marinus clone ASNC2150] Length = 244 Score = 223 bits (568), Expect = 1e-56, Method: Composition-based stats. Identities = 71/152 (46%), Positives = 104/152 (68%), Gaps = 1/152 (0%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93 + ++TS+D L WAR SL + +G ACC +E R+D +RFG PR+SPRQ+ Sbjct: 30 LSENIILTSLDDLHNWARLSSLWPLLYGTACCFIEFAALIGSRFDFDRFGLVPRSSPRQA 89 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGCDRIVPV 152 D++IVAGT+T KMA AL R+Y+QMPEP+YVI+MG+C GG + S + VRG D+++PV Sbjct: 90 DLLIVAGTVTMKMAPALVRLYEQMPEPKYVIAMGACTITGGMFSADSTTAVRGVDKLIPV 149 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 D+Y+PGCPP EA+ ++ L+KK+ ++ Sbjct: 150 DLYLPGCPPRPEAIFDAVIKLRKKVGNESILE 181 >gi|167391809|ref|YP_001671687.1| NADH dehydrogenase subunit K [Carica papaya] gi|218527885|sp|B1A939|NDHK_CARPA RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K gi|166344136|gb|ABY86786.1| NADH-plastoquinone oxidoreductase subunit K [Carica papaya] Length = 225 Score = 223 bits (568), Expect = 1e-56, Method: Composition-based stats. Identities = 70/154 (45%), Positives = 103/154 (66%), Gaps = 1/154 (0%) Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87 + T + T+++ L W+R SL + +G +CC +E R+D +R+G PR Sbjct: 7 PLLDRTTQNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66 Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146 +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG Sbjct: 67 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126 Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 D+++PVD+Y+PGCPP EA+I I L+KKI R Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 160 >gi|42795491|gb|AAS46058.1| NADH dehydrogenase subunit K [Oryza sativa Indica Group] gi|42795558|gb|AAS46124.1| NADH dehydrogenase subunit K [Oryza sativa Japonica Group] gi|42795622|gb|AAS46187.1| NADH dehydrogenase subunit K [Oryza sativa Japonica Group] gi|290790577|gb|ADD62837.1| NADH-plastoquinone oxidoreductase subunit K [Oryza sativa Japonica Group] gi|290790646|gb|ADD62905.1| NADH-plastoquinone oxidoreductase subunit K [Oryza meridionalis] gi|290790715|gb|ADD62973.1| NADH-plastoquinone oxidoreductase subunit K [Oryza australiensis] Length = 253 Score = 223 bits (568), Expect = 1e-56, Method: Composition-based stats. Identities = 68/154 (44%), Positives = 103/154 (66%), Gaps = 1/154 (0%) Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87 + + + + T++ L W+R SL + +G +CC +E R+D +R+G PR Sbjct: 35 PLLDQTSSNSVISTTLKDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 94 Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146 +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG Sbjct: 95 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 154 Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 D+++PVD+Y+PGCPP EA+I + L+KKI R Sbjct: 155 DKLIPVDVYLPGCPPKPEAVIDALTKLRKKISRE 188 >gi|154795223|ref|YP_052753.2| NADH dehydrogenase subunit K [Oryza nivara] gi|154795235|ref|YP_654218.2| NADH dehydrogenase subunit K [Oryza sativa Indica Group] gi|218511705|sp|Q6ENH0|NDHK_ORYNI RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K gi|218511706|sp|P0C341|NDHK_ORYSA RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K gi|218511707|sp|P0C342|NDHK_ORYSI RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K gi|218511708|sp|P0C343|NDHK_ORYSJ RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K gi|20146751|gb|AAM12487.1|AC074232_14 PSII G protein 5'-partial [Oryza sativa Japonica Group] Length = 225 Score = 223 bits (568), Expect = 1e-56, Method: Composition-based stats. Identities = 68/154 (44%), Positives = 103/154 (66%), Gaps = 1/154 (0%) Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87 + + + + T++ L W+R SL + +G +CC +E R+D +R+G PR Sbjct: 7 PLLDQTSSNSVISTTLKDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66 Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146 +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG Sbjct: 67 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126 Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 D+++PVD+Y+PGCPP EA+I + L+KKI R Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDALTKLRKKISRE 160 >gi|49614999|dbj|BAD26782.1| NADH dehydrogenase subunit K [Oryza nivara] Length = 246 Score = 223 bits (568), Expect = 1e-56, Method: Composition-based stats. Identities = 68/154 (44%), Positives = 103/154 (66%), Gaps = 1/154 (0%) Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87 + + + + T++ L W+R SL + +G +CC +E R+D +R+G PR Sbjct: 28 PLLDQTSSNSVISTTLKDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 87 Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146 +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG Sbjct: 88 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 147 Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 D+++PVD+Y+PGCPP EA+I + L+KKI R Sbjct: 148 DKLIPVDVYLPGCPPKPEAVIDALTKLRKKISRE 181 >gi|124360833|gb|ABN08805.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit [Medicago truncatula] Length = 227 Score = 223 bits (568), Expect = 1e-56, Method: Composition-based stats. Identities = 70/154 (45%), Positives = 104/154 (67%), Gaps = 1/154 (0%) Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87 + + T + T+++ L W+R SL + +G +CC +E R+D +R+G PR Sbjct: 7 PLLDQKTKNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66 Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146 +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG Sbjct: 67 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126 Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 D+++PVD+Y+PGCPP EA+I I L+KKI R Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 160 >gi|218512130|sp|P06670|NDHK_MAIZE RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K Length = 227 Score = 223 bits (568), Expect = 1e-56, Method: Composition-based stats. Identities = 68/154 (44%), Positives = 104/154 (67%), Gaps = 1/154 (0%) Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87 + + + + T+++ L W+R SL + +G +CC +E R+D +R+G PR Sbjct: 7 PLLDQTSSNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66 Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146 +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG Sbjct: 67 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126 Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 D+++PVD+Y+PGCPP EA+I + L+KKI R Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDALTKLRKKIARE 160 >gi|218440674|ref|YP_002379003.1| NADH dehydrogenase subunit B [Cyanothece sp. PCC 7424] gi|238065002|sp|B7KJ51|NDHK_CYAP7 RecName: Full=NAD(P)H-quinone oxidoreductase subunit K; AltName: Full=NAD(P)H dehydrogenase I subunit K; AltName: Full=NDH-1 subunit K; Short=NDH-K gi|218173402|gb|ACK72135.1| NADH-quinone oxidoreductase, B subunit [Cyanothece sp. PCC 7424] Length = 247 Score = 223 bits (568), Expect = 1e-56, Method: Composition-based stats. Identities = 75/176 (42%), Positives = 115/176 (65%), Gaps = 4/176 (2%) Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62 LT+ + Q L ++ S+++ +++ ++T+VD L WAR SL + +G Sbjct: 5 LTSSSDLFTQEQKEKLLNPINH--SQVTQDLSE-NVILTTVDDLYNWARLSSLWPLLYGT 61 Query: 63 ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122 ACC +E R+D +RFG PR+SPRQ+D++I AGT+T KMA AL R+Y+QMP+P+Y Sbjct: 62 ACCFIEFAALIGSRFDFDRFGLVPRSSPRQADLIITAGTITMKMAPALVRLYEQMPDPKY 121 Query: 123 VISMGSCANGGGYY-HYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 VI+MG+C GG + S + VRG D+++PVD+Y+PGCPP EA+ I+ L+KK+ Sbjct: 122 VIAMGACTITGGMFSSDSTTAVRGVDKLIPVDVYIPGCPPRPEAIFDAIVKLRKKV 177 >gi|237752491|ref|ZP_04582971.1| NADH dehydrogenase subunit B [Helicobacter winghamensis ATCC BAA-430] gi|229375980|gb|EEO26071.1| NADH dehydrogenase subunit B [Helicobacter winghamensis ATCC BAA-430] Length = 176 Score = 222 bits (567), Expect = 1e-56, Method: Composition-based stats. Identities = 86/147 (58%), Positives = 112/147 (76%), Gaps = 1/147 (0%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 +TSVD+L+ W R+ SL MT+GLACCA+EMM RYD +RFG RASPRQSDVMI Sbjct: 23 IALTSVDKLLNWGRSNSLWAMTYGLACCAIEMMATGASRYDFDRFGTIFRASPRQSDVMI 82 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 +AGT+T K A +RR+YDQMPEP++VISMGSCAN GG ++ +Y+ V+G DRI+PVDIY+P Sbjct: 83 IAGTVTKKHAQFVRRLYDQMPEPKWVISMGSCANTGGMFN-TYATVQGVDRIIPVDIYLP 141 Query: 158 GCPPTAEALIYGILLLQKKIRRVGNVK 184 GC P E L Y +++LQ+KIR+ + Sbjct: 142 GCSPRPETLQYALMVLQQKIRKQKASR 168 >gi|218129269|ref|ZP_03458073.1| hypothetical protein BACEGG_00846 [Bacteroides eggerthii DSM 20697] gi|317475241|ref|ZP_07934508.1| NADH-quinone oxidoreductase [Bacteroides eggerthii 1_2_48FAA] gi|217988647|gb|EEC54967.1| hypothetical protein BACEGG_00846 [Bacteroides eggerthii DSM 20697] gi|316908694|gb|EFV30381.1| NADH-quinone oxidoreductase [Bacteroides eggerthii 1_2_48FAA] Length = 194 Score = 222 bits (567), Expect = 1e-56, Method: Composition-based stats. Identities = 74/160 (46%), Positives = 106/160 (66%), Gaps = 3/160 (1%) Query: 22 VDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDL 79 + ++ E+ G + +D V W R+ SL +TF +CC +E M RYD+ Sbjct: 19 DNETLEKLVRELNAGGANVALGVLDDFVNWGRSNSLWPLTFATSCCGIEFMALGAARYDM 78 Query: 80 ERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY 138 RFGF RASPRQ+D+++V GT+TNKMA L+R+YDQM +P+YVI++G CA GG + Sbjct: 79 ARFGFEVARASPRQADMIMVCGTITNKMAPVLKRLYDQMADPKYVIAVGGCAVSGGPFKK 138 Query: 139 SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 SY VV G D+I+PVD+Y+PGCPP EA YG++ LQ+K++ Sbjct: 139 SYHVVNGVDKILPVDVYIPGCPPRPEAFYYGMMQLQRKVK 178 >gi|154795251|ref|YP_001001538.2| NADH-plastoquinone oxidoreductase subunit K [Nuphar advena] gi|218527955|sp|A1XFV9|NDHK_NUPAD RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K Length = 225 Score = 222 bits (567), Expect = 1e-56, Method: Composition-based stats. Identities = 69/149 (46%), Positives = 102/149 (68%), Gaps = 1/149 (0%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 T + T+++ L W+R SL + +G +CC +E R+D +R+G PR+SPRQ Sbjct: 12 TTPNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQ 71 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGCDRIVP 151 +D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++P Sbjct: 72 ADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIP 131 Query: 152 VDIYVPGCPPTAEALIYGILLLQKKIRRV 180 VD+Y+PGCPP EA+I I L+KK+ R Sbjct: 132 VDVYLPGCPPKPEAIIDAITKLRKKVSRE 160 >gi|197294100|ref|YP_002149721.1| NADH-plastoquinone oxidoreductase subunit K [Cicer arietinum] gi|197089788|gb|ACH41058.1| NADH-plastoquinone oxidoreductase subunit K [Cicer arietinum] Length = 227 Score = 222 bits (567), Expect = 1e-56, Method: Composition-based stats. Identities = 70/154 (45%), Positives = 104/154 (67%), Gaps = 1/154 (0%) Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87 + + T + T+++ L W+R SL + +G +CC +E R+D +R+G PR Sbjct: 7 PVLDQKTKNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66 Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146 +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG Sbjct: 67 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126 Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 D+++PVD+Y+PGCPP EA+I I L+KKI R Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 160 >gi|152990038|ref|YP_001355760.1| NADH dehydrogenase subunit B [Nitratiruptor sp. SB155-2] gi|238065184|sp|A6Q1P4|NUOB_NITSB RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|151421899|dbj|BAF69403.1| NADH-quinone oxidoreductase, chain B [Nitratiruptor sp. SB155-2] Length = 169 Score = 222 bits (567), Expect = 1e-56, Method: Composition-based stats. Identities = 87/147 (59%), Positives = 112/147 (76%), Gaps = 1/147 (0%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 +T+VD+LV W RT SL +T+GLACCA+EMM + RYD +RFG RASPRQSDVMI Sbjct: 16 VALTTVDKLVNWGRTNSLWVLTYGLACCAIEMMASGASRYDFDRFGVIFRASPRQSDVMI 75 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGTLT K A +RR+YDQM EP++VISMGSCAN GG ++ +Y+ V+G DR++PVDIY+P Sbjct: 76 VAGTLTKKHAEFIRRLYDQMAEPKWVISMGSCANTGGMFN-TYATVQGVDRVIPVDIYLP 134 Query: 158 GCPPTAEALIYGILLLQKKIRRVGNVK 184 GC P E L Y ++LLQKK+R+ + Sbjct: 135 GCAPRPETLQYAVMLLQKKLRKRSIFQ 161 >gi|110598466|ref|ZP_01386737.1| NADH-quinone oxidoreductase, B subunit [Chlorobium ferrooxidans DSM 13031] gi|110339916|gb|EAT58420.1| NADH-quinone oxidoreductase, B subunit [Chlorobium ferrooxidans DSM 13031] Length = 189 Score = 222 bits (567), Expect = 1e-56, Method: Composition-based stats. Identities = 90/147 (61%), Positives = 112/147 (76%), Gaps = 1/147 (0%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 IT LVTSVD ++ WAR S+ M FGLACCA+EMM + YDLERFG PR+SPRQ Sbjct: 8 ITKHNVLVTSVDNVLNWARLSSIWPMGFGLACCAIEMMATNASNYDLERFGIFPRSSPRQ 67 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVP 151 SD+MIVAGT+T KMA + R+Y+QMPEPRYV+SMGSC+N GG Y Y V++G DR++P Sbjct: 68 SDLMIVAGTVTMKMAERVVRLYEQMPEPRYVLSMGSCSNCGGPYWEHGYHVLKGVDRVIP 127 Query: 152 VDIYVPGCPPTAEALIYGILLLQKKIR 178 VD+YVPGCPP EALI G++ +Q+ IR Sbjct: 128 VDVYVPGCPPRPEALIGGLMKIQELIR 154 >gi|270308195|ref|YP_003330253.1| NADH-quinone oxidoreductase, B subunit [Dehalococcoides sp. VS] gi|270154087|gb|ACZ61925.1| NADH-quinone oxidoreductase, B subunit [Dehalococcoides sp. VS] Length = 200 Score = 222 bits (567), Expect = 1e-56, Method: Composition-based stats. Identities = 84/177 (47%), Positives = 117/177 (66%), Gaps = 1/177 (0%) Query: 9 KIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVE 68 +I + +S + + G +TSV++++ W+R SL + FGLACCA+E Sbjct: 23 GVIQSFRTEHTSPYPDPTDWLSGDESPPGVFITSVEKVLNWSRHYSLWPVMFGLACCAIE 82 Query: 69 MMQASMPRYDLERFGF-APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMG 127 MM + R+DL RFG RASPRQ+D+MIVAGTLT KMA LRR+YDQMPEP++V++MG Sbjct: 83 MMCMAASRWDLARFGMDIFRASPRQADLMIVAGTLTWKMAPWLRRIYDQMPEPKWVLAMG 142 Query: 128 SCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 +C GG + SYSVV G + +VPVD+YVPGCPP EAL+ I+ + +KI + +K Sbjct: 143 ACGTSGGLFRDSYSVVPGFNLVVPVDVYVPGCPPRPEALMRAIMDIHEKIDKTRIIK 199 >gi|297625190|ref|YP_003706624.1| NADH-quinone oxidoreductase subunit B [Truepera radiovictrix DSM 17093] gi|297166370|gb|ADI16081.1| NADH-quinone oxidoreductase, B subunit [Truepera radiovictrix DSM 17093] Length = 178 Score = 222 bits (567), Expect = 1e-56, Method: Composition-based stats. Identities = 85/154 (55%), Positives = 118/154 (76%), Gaps = 2/154 (1%) Query: 26 FSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA 85 F + E+ ++G L +++ +LV W R+ SL TFGLACCA+EMMQ++ R+DL RFG Sbjct: 7 FEKDVQELENEGILFSTLSKLVAWGRSNSLWPATFGLACCAIEMMQSTNARHDLSRFGSE 66 Query: 86 -PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR 144 RASPRQ+DVMIVAG L+ KMA +RRVYDQMP+P++VISMG+CA+ GG ++ Y++V+ Sbjct: 67 VFRASPRQADVMIVAGRLSKKMAPVMRRVYDQMPDPKWVISMGACASSGGMFNN-YAIVQ 125 Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 D +VPVD++VPGCPP EAL+Y ++ LQKK+R Sbjct: 126 NVDSVVPVDVFVPGCPPRPEALVYAVMQLQKKVR 159 >gi|154795257|ref|YP_784477.2| NADH-plastoquinone oxidoreductase subunit K [Piper cenocladum] gi|218527951|sp|Q06GQ6|NDHK_PIPCE RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K Length = 229 Score = 222 bits (567), Expect = 1e-56, Method: Composition-based stats. Identities = 68/154 (44%), Positives = 103/154 (66%), Gaps = 1/154 (0%) Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87 + T + T+++ L W+R SL + +G +CC +E R+D +R+G PR Sbjct: 7 PLLDRTTQSSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66 Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146 +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG Sbjct: 67 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126 Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 D+++PVD+Y+PGCPP EA++ I L+KK+ R Sbjct: 127 DKLIPVDVYLPGCPPKPEAILDAITKLRKKVSRE 160 >gi|50250331|emb|CAF28597.1| photosystem II G protein [Nymphaea alba] Length = 253 Score = 222 bits (567), Expect = 1e-56, Method: Composition-based stats. Identities = 69/149 (46%), Positives = 102/149 (68%), Gaps = 1/149 (0%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 T + T+++ L W+R SL + +G +CC +E R+D +R+G PR+SPRQ Sbjct: 40 TTPNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQ 99 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGCDRIVP 151 +D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++P Sbjct: 100 ADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIP 159 Query: 152 VDIYVPGCPPTAEALIYGILLLQKKIRRV 180 VD+Y+PGCPP EA+I I L+KK+ R Sbjct: 160 VDVYLPGCPPKPEAIIDAITKLRKKVSRE 188 >gi|194132108|gb|ACF33362.1| NADH-plastoquinone oxidoreductase subunit K [Gonystylus bancanus] Length = 229 Score = 222 bits (567), Expect = 1e-56, Method: Composition-based stats. Identities = 71/148 (47%), Positives = 103/148 (69%), Gaps = 1/148 (0%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93 TH + T+++ L W+R SL + +G +CC +E R+D +R+G PR+SPRQ+ Sbjct: 13 THNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 72 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGCDRIVPV 152 D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++PV Sbjct: 73 DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 132 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRV 180 D+Y+PGCPP EA+I I L+KKI R Sbjct: 133 DVYLPGCPPKPEAVIDAITKLRKKISRE 160 >gi|283794972|ref|YP_003359363.1| photosystem II G protein [Olea europaea] gi|330850747|ref|YP_004376425.1| photosystem II protein G [Olea europaea subsp. europaea] gi|281428691|gb|ADA69930.1| photosystem II G protein [Olea europaea] gi|291059257|gb|ADD72093.1| NADH-plastoquinone oxidoreductase subunit K [Olea europaea] gi|328795437|emb|CBR30319.1| photosystem II protein G [Olea europaea subsp. europaea] Length = 225 Score = 222 bits (567), Expect = 1e-56, Method: Composition-based stats. Identities = 69/154 (44%), Positives = 103/154 (66%), Gaps = 1/154 (0%) Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87 + + + T+++ L W+R SL + +G +CC +E R+D +R+G PR Sbjct: 7 PLLDQTVQNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66 Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146 +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG Sbjct: 67 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126 Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 D+++PVD+Y+PGCPP EA+I I L+KKI R Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 160 >gi|159902860|ref|YP_001550204.1| NADH dehydrogenase subunit B [Prochlorococcus marinus str. MIT 9211] gi|218527920|sp|A9BDU0|NDHK_PROM4 RecName: Full=NAD(P)H-quinone oxidoreductase subunit K; AltName: Full=NAD(P)H dehydrogenase I subunit K; AltName: Full=NDH-1 subunit K; Short=NDH-K gi|159888036|gb|ABX08250.1| putative respiratory-chain NADH dehydrogenase subunit [Prochlorococcus marinus str. MIT 9211] Length = 252 Score = 222 bits (567), Expect = 2e-56, Method: Composition-based stats. Identities = 71/152 (46%), Positives = 107/152 (70%), Gaps = 2/152 (1%) Query: 27 SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP 86 +++E++ ++TS+D L WAR SL + +G ACC +E R+D +RFG P Sbjct: 37 PNVTNELSE-NIILTSLDDLHNWARLSSLWPLLYGTACCFIEFAALIGSRFDFDRFGLVP 95 Query: 87 RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRG 145 R+SPRQ+D++IVAGT+T KMA AL R+Y+QMP+P+YVI+MG+C GG + S + VRG Sbjct: 96 RSSPRQADLLIVAGTVTMKMAPALVRLYEQMPDPKYVIAMGACTITGGMFSADSTTAVRG 155 Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 D+++PVD+Y+PGCPP EA+ ++ L+KK+ Sbjct: 156 VDKLIPVDLYLPGCPPRPEAIFDAVIKLRKKV 187 >gi|154795231|ref|YP_053159.2| NADH dehydrogenase subunit K [Nymphaea alba] gi|218527956|sp|Q6EW44|NDHK_NYMAL RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K Length = 225 Score = 222 bits (567), Expect = 2e-56, Method: Composition-based stats. Identities = 69/149 (46%), Positives = 102/149 (68%), Gaps = 1/149 (0%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 T + T+++ L W+R SL + +G +CC +E R+D +R+G PR+SPRQ Sbjct: 12 TTPNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQ 71 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGCDRIVP 151 +D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++P Sbjct: 72 ADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIP 131 Query: 152 VDIYVPGCPPTAEALIYGILLLQKKIRRV 180 VD+Y+PGCPP EA+I I L+KK+ R Sbjct: 132 VDVYLPGCPPKPEAIIDAITKLRKKVSRE 160 >gi|57864900|gb|AAW57074.1| NADH dehydrogenase subunit K [cyanobacterium endosymbiont of Rhopalodia gibba] Length = 281 Score = 222 bits (566), Expect = 2e-56, Method: Composition-based stats. Identities = 76/180 (42%), Positives = 115/180 (63%), Gaps = 3/180 (1%) Query: 2 GLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFG 61 TT++ I Q + A S+++ +++ ++T+VD L WAR SL + +G Sbjct: 34 PNTTLDLAAIEQQQKEKILNPIAR-SQVTQDLSE-NVILTTVDDLHNWARLSSLWPLLYG 91 Query: 62 LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPR 121 ACC +E R+D +RFG PR+SPRQ+D++I AGT+T KMA AL R+Y+QMP+P+ Sbjct: 92 TACCFIEFAALIGSRFDFDRFGLVPRSSPRQADLIITAGTITMKMAPALVRLYEQMPDPK 151 Query: 122 YVISMGSCANGGGYY-HYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 YVI+MG+C GG + S + VRG D+++PVD+Y+PGCPP EA+ I+ L+KK+ Sbjct: 152 YVIAMGACTITGGMFSSDSTTAVRGVDKLIPVDVYIPGCPPRPEAIFDAIIKLRKKVSNE 211 >gi|22652005|gb|AAN03554.1|AF381040_4 NADH dehydrogenase subunit K [Synechococcus sp. PCC 7002] Length = 241 Score = 222 bits (566), Expect = 2e-56, Method: Composition-based stats. Identities = 72/155 (46%), Positives = 109/155 (70%), Gaps = 2/155 (1%) Query: 27 SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP 86 S+++ +++ ++T+VD L WAR SL + +G ACC +E R+D +RFG P Sbjct: 21 SQVTQDLSE-NVILTTVDDLYNWARLSSLWPLLYGTACCFIEFAALLGSRFDFDRFGLVP 79 Query: 87 RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRG 145 R+SPRQ+D+++VAGT+T KMA AL R+Y++MPEP+YVI+MG+C GG + S + VRG Sbjct: 80 RSSPRQADLILVAGTVTMKMAPALVRLYEEMPEPKYVIAMGACTITGGMFSSDSTTAVRG 139 Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 D+++PVD+Y+PGCPP EA+I I+ L+KK+ Sbjct: 140 VDKLIPVDLYIPGCPPRPEAIIDAIIKLRKKVSNE 174 >gi|313202843|ref|YP_004041500.1| NADH dehydrogenase subunit b [Paludibacter propionicigenes WB4] gi|312442159|gb|ADQ78515.1| NADH dehydrogenase subunit B [Paludibacter propionicigenes WB4] Length = 194 Score = 222 bits (566), Expect = 2e-56, Method: Composition-based stats. Identities = 75/179 (41%), Positives = 115/179 (64%), Gaps = 3/179 (1%) Query: 1 MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTF 60 M L +N K I E ++ + E +++ +D+L+ W R+ S+ + + Sbjct: 8 MELKNINIKGIPTAEFNDNEYLENYIKEL--EANGVNVVLSKIDELINWGRSNSVWPLIY 65 Query: 61 GLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119 +CC +E M ++ +D+ RFG R SPRQ+D+MIVAGT+ +KMA ++RVYDQM E Sbjct: 66 ATSCCGIEFMASAAAHHDISRFGMEVTRNSPRQADLMIVAGTMVHKMAPLIKRVYDQMAE 125 Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 P+YV++MG+CA GG + SY VV G D+I+PVD+Y+PGCPP E+L YG++ LQ+KI+ Sbjct: 126 PKYVVAMGACAISGGPFVNSYHVVPGVDQIIPVDVYIPGCPPRPESLFYGLMQLQRKIK 184 >gi|325104079|ref|YP_004273733.1| NADH dehydrogenase subunit B [Pedobacter saltans DSM 12145] gi|324972927|gb|ADY51911.1| NADH dehydrogenase subunit B [Pedobacter saltans DSM 12145] Length = 161 Score = 222 bits (566), Expect = 2e-56, Method: Composition-based stats. Identities = 82/153 (53%), Positives = 112/153 (73%), Gaps = 1/153 (0%) Query: 29 ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88 + ++ + G +VT +D L+ W+R SL ++FGLACCA+EMM + +D +R G PR Sbjct: 3 LEKQLENGGLIVTKLDDLLNWSRLSSLWPLSFGLACCAIEMMGSYSSNFDFDRLGVFPRP 62 Query: 89 SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCD 147 SPRQ+DV+I+AGT+T KMA ++R+Y+QMPEP+YVISMGSC+N GG Y Y VV+G D Sbjct: 63 SPRQADVIIIAGTVTFKMAERIKRLYEQMPEPKYVISMGSCSNCGGPYWEHGYHVVKGVD 122 Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 RI+PVD+YV GCPP EALI I+ LQ+KI + Sbjct: 123 RIIPVDVYVQGCPPRPEALIGAIIELQQKIEKE 155 >gi|282897133|ref|ZP_06305135.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit [Raphidiopsis brookii D9] gi|281197785|gb|EFA72679.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit [Raphidiopsis brookii D9] Length = 244 Score = 222 bits (566), Expect = 2e-56, Method: Composition-based stats. Identities = 73/151 (48%), Positives = 102/151 (67%), Gaps = 1/151 (0%) Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87 ++ + ++T+VD L WAR SL + FG ACC +E R+D +RFG PR Sbjct: 22 PTVTQELSENVILTTVDDLYNWARLSSLWPLLFGTACCFIEFAALIGSRFDFDRFGLIPR 81 Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146 +SPRQ+D++I AGT+T KM L R+Y+QMPEP+YVI+MG+C GG + S S VRG Sbjct: 82 SSPRQADLLITAGTITMKMGPQLVRLYEQMPEPKYVIAMGACTITGGMFSVDSPSAVRGV 141 Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 D+++PVD+Y+PGCPP EA+I I+ L+KKI Sbjct: 142 DKLIPVDVYLPGCPPRPEAIIDAIIKLRKKI 172 >gi|110456608|gb|ABG74735.1| NADH dehydrogenase 32 kDa subunit [Forsythia europaea] Length = 225 Score = 222 bits (566), Expect = 2e-56, Method: Composition-based stats. Identities = 69/154 (44%), Positives = 103/154 (66%), Gaps = 1/154 (0%) Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87 + + + T+++ L W+R SL + +G +CC +E R+D +R+G PR Sbjct: 7 PLLDQTVQNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66 Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146 +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG Sbjct: 67 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126 Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 D+++PVD+Y+PGCPP EA+I I L+KKI R Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 160 >gi|29337233|sp|Q31791|NDHK_ANTFO RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K gi|29122638|dbj|BAC55353.2| NADH dehydrogenase 27 kDa subunit [Anthoceros formosae] Length = 247 Score = 222 bits (566), Expect = 2e-56, Method: Composition-based stats. Identities = 72/159 (45%), Positives = 106/159 (66%), Gaps = 1/159 (0%) Query: 27 SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP 86 S + E T ++T+ + WAR SL + +G +CC +E R+D +R+G P Sbjct: 24 SSLPDETTSDSIILTTFNDFSNWARLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVP 83 Query: 87 RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRG 145 R+SPRQ+D++I AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG Sbjct: 84 RSSPRQADLIITAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRG 143 Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 D+++PVDIY+PGCPP EA+I I+ L+K + R + + Sbjct: 144 VDKLIPVDIYLPGCPPKPEAIIDAIIKLRKGVAREVHER 182 >gi|27808002|dbj|BAC55447.1| NADH dehydrogenase 27 kDa subunit [Anthoceros formosae] Length = 247 Score = 222 bits (566), Expect = 2e-56, Method: Composition-based stats. Identities = 72/159 (45%), Positives = 106/159 (66%), Gaps = 1/159 (0%) Query: 27 SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP 86 S + E T ++T+ + WAR SL + +G +CC +E R+D +R+G P Sbjct: 24 SSLPDETTSDSIILTTFNDFSNWARLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVP 83 Query: 87 RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRG 145 R+SPRQ+D++I AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG Sbjct: 84 RSSPRQADLIITAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRG 143 Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 D+++PVDIY+PGCPP EA+I I+ L+K + R + + Sbjct: 144 VDKLIPVDIYLPGCPPKPEAIIDAIIKLRKGVAREVHER 182 >gi|154795236|ref|NP_039387.2| NADH dehydrogenase subunit K [Oryza sativa Japonica Group] Length = 225 Score = 222 bits (566), Expect = 2e-56, Method: Composition-based stats. Identities = 68/154 (44%), Positives = 103/154 (66%), Gaps = 1/154 (0%) Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87 + + + + T++ L W+R SL + +G +CC +E R+D +R+G PR Sbjct: 7 PLLDQRSSNSVISTTLKDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66 Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146 +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG Sbjct: 67 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126 Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 D+++PVD+Y+PGCPP EA+I + L+KKI R Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDALTKLRKKISRE 160 >gi|11988|emb|CAA34000.1| unnamed protein product [Oryza sativa Japonica Group] gi|226609|prf||1603356AF photosystem II G protein Length = 246 Score = 222 bits (566), Expect = 2e-56, Method: Composition-based stats. Identities = 68/154 (44%), Positives = 103/154 (66%), Gaps = 1/154 (0%) Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87 + + + + T++ L W+R SL + +G +CC +E R+D +R+G PR Sbjct: 28 PLLDQRSSNSVISTTLKDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 87 Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146 +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG Sbjct: 88 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 147 Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 D+++PVD+Y+PGCPP EA+I + L+KKI R Sbjct: 148 DKLIPVDVYLPGCPPKPEAVIDALTKLRKKISRE 181 >gi|329962484|ref|ZP_08300484.1| putative NADH dehydrogenase I subunit B [Bacteroides fluxus YIT 12057] gi|328530040|gb|EGF56928.1| putative NADH dehydrogenase I subunit B [Bacteroides fluxus YIT 12057] Length = 196 Score = 222 bits (566), Expect = 2e-56, Method: Composition-based stats. Identities = 74/160 (46%), Positives = 106/160 (66%), Gaps = 3/160 (1%) Query: 22 VDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDL 79 + ++ E+ G + +D V W R+ SL +TF +CC +E M RYD+ Sbjct: 19 DNETLEKLVRELNAGGANVALGVLDDFVNWGRSNSLWPLTFATSCCGIEFMALGAARYDM 78 Query: 80 ERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY 138 RFGF RASPRQ+D+++V GT+TNKMA L+R+YDQM +P+YVI++G CA GG + Sbjct: 79 ARFGFEVARASPRQADMIMVCGTITNKMAPVLKRLYDQMADPKYVIAVGGCAVSGGPFKK 138 Query: 139 SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 SY VV G D+I+PVD+Y+PGCPP EA YG++ LQ+K++ Sbjct: 139 SYHVVNGVDKILPVDVYIPGCPPRPEAFYYGMMQLQRKVK 178 >gi|156573611|gb|ABU85141.1| NADH-plastoquinone oxidoreductase subunit K [Yucca schidigera] Length = 239 Score = 222 bits (566), Expect = 2e-56, Method: Composition-based stats. Identities = 70/154 (45%), Positives = 103/154 (66%), Gaps = 1/154 (0%) Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87 + + T + T+ + L W+R SL + +G +CC +E R+D +R+G PR Sbjct: 21 PLLDQTTPNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 80 Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146 +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG Sbjct: 81 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 140 Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 D+++PVD+Y+PGCPP EA+I I L+KKI R Sbjct: 141 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 174 >gi|313199634|ref|YP_004021250.1| no product string in file [Isoetes flaccida] gi|291575363|gb|ADE18076.1| no product string in file [Isoetes flaccida] Length = 250 Score = 222 bits (566), Expect = 2e-56, Method: Composition-based stats. Identities = 71/162 (43%), Positives = 108/162 (66%), Gaps = 1/162 (0%) Query: 20 EKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDL 79 +++ S + T ++T+ + L WAR SL + +G +CC +E R+D Sbjct: 20 PVINSIDSSLLDRTTPNSIVLTTFNDLSNWARLSSLWPLLYGTSCCFIEFASLIGSRFDF 79 Query: 80 ERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-Y 138 +R+G PR+SPRQ+D++I AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + Sbjct: 80 DRYGLVPRSSPRQADLIITAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTD 139 Query: 139 SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 SYS VRG D+++PVD+Y+PGCPP EA+I I+ L+K++ R Sbjct: 140 SYSTVRGVDKLIPVDVYLPGCPPKPEAIIDAIVKLRKRVARE 181 >gi|160891170|ref|ZP_02072173.1| hypothetical protein BACUNI_03617 [Bacteroides uniformis ATCC 8492] gi|317481067|ref|ZP_07940146.1| NADH-quinone oxidoreductase [Bacteroides sp. 4_1_36] gi|156859391|gb|EDO52822.1| hypothetical protein BACUNI_03617 [Bacteroides uniformis ATCC 8492] gi|316902780|gb|EFV24655.1| NADH-quinone oxidoreductase [Bacteroides sp. 4_1_36] Length = 193 Score = 222 bits (566), Expect = 2e-56, Method: Composition-based stats. Identities = 73/160 (45%), Positives = 106/160 (66%), Gaps = 3/160 (1%) Query: 22 VDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDL 79 + ++ E+ G + +D V W R+ SL +TF +CC +E M RYD+ Sbjct: 19 DNETLEKLVRELNAGGANVALGVLDDFVNWGRSNSLWPLTFATSCCGIEFMALGAARYDM 78 Query: 80 ERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY 138 RFGF RASPRQ+D+++V GT+TNKMA L+R+YDQM +P+YV+++G CA GG + Sbjct: 79 ARFGFEVARASPRQADMIMVCGTITNKMAPVLKRLYDQMADPKYVVAVGGCAVSGGPFKK 138 Query: 139 SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 SY VV G D+I+PVD+Y+PGCPP EA YG++ LQ+K++ Sbjct: 139 SYHVVNGVDKILPVDVYIPGCPPRPEAFYYGMMQLQRKVK 178 >gi|123967853|ref|YP_001008711.1| NADH dehydrogenase subunit B [Prochlorococcus marinus str. AS9601] gi|218527922|sp|A2BP93|NDHK_PROMS RecName: Full=NAD(P)H-quinone oxidoreductase subunit K; AltName: Full=NAD(P)H dehydrogenase I subunit K; AltName: Full=NDH-1 subunit K; Short=NDH-K gi|123197963|gb|ABM69604.1| putative respiratory-chain NADH dehydrogenase subunit [Prochlorococcus marinus str. AS9601] Length = 244 Score = 222 bits (566), Expect = 2e-56, Method: Composition-based stats. Identities = 71/152 (46%), Positives = 104/152 (68%), Gaps = 1/152 (0%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93 + ++TS+D L WAR SL + +G ACC +E R+D +RFG PR+SPRQ+ Sbjct: 30 LSENIILTSLDDLHNWARLSSLWPLLYGTACCFIEFAALIGSRFDFDRFGLVPRSSPRQA 89 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGCDRIVPV 152 D++IVAGT+T KMA AL R+Y+QMPEP+YVI+MG+C GG + S + VRG D+++PV Sbjct: 90 DLLIVAGTVTMKMAPALVRLYEQMPEPKYVIAMGACTITGGMFSADSTTAVRGVDKLIPV 149 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 D+Y+PGCPP EA+ ++ L+KK+ ++ Sbjct: 150 DLYLPGCPPRPEAIFDAVIKLRKKVGNESILE 181 >gi|118430306|ref|YP_874740.1| NADH-plastoquinone oxidoreductase subunit K [Agrostis stolonifera] gi|118201215|gb|ABK79584.1| NADH-plastoquinone oxidoreductase subunit K [Agrostis stolonifera] Length = 245 Score = 222 bits (566), Expect = 2e-56, Method: Composition-based stats. Identities = 75/181 (41%), Positives = 113/181 (62%), Gaps = 2/181 (1%) Query: 1 MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTF 60 M LT +K G+ S +F + + + + T+ + L W+R SL + + Sbjct: 1 MVLTEYLEKKKEGKDSIETVMNLIEFPLL-DQTSSNSVISTTPNDLSNWSRLSSLWPLLY 59 Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 G +CC +E R+D +R+G PR+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP Sbjct: 60 GTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEP 119 Query: 121 RYVISMGSCANGGGYYH-YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179 +YVI+MG+C GG + SYS VRG D+++PVD+Y+PGCPP EA+I + L+KKI R Sbjct: 120 KYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEAVIDALTKLRKKISR 179 Query: 180 V 180 Sbjct: 180 E 180 >gi|9652180|gb|AAF91429.1|AF279902_1 NADH-ubiquinone oxidoreductase subunit PSST [Lupinus luteus] Length = 210 Score = 222 bits (565), Expect = 2e-56, Method: Composition-based stats. Identities = 112/144 (77%), Positives = 122/144 (84%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 F+++ VD L+ WAR GS+ MTFGLACCAVEMM RYDL+RFG R SPRQSD MI Sbjct: 59 FVISKVDDLMNWARRGSIWPMTFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDCMI 118 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSY VVRGCDRIVPVDIYVP Sbjct: 119 VAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYYVVRGCDRIVPVDIYVP 178 Query: 158 GCPPTAEALIYGILLLQKKIRRVG 181 GCPPTAEAL+YG+L LQKKI R Sbjct: 179 GCPPTAEALLYGLLQLQKKINRRK 202 >gi|289066814|ref|YP_003434332.1| NADH-plastoquinone oxidoreductase subunit K [Vigna radiata] gi|259020001|gb|ACV90199.1| NADH-plastoquinone oxidoreductase subunit K [Vigna radiata] Length = 212 Score = 222 bits (565), Expect = 2e-56, Method: Composition-based stats. Identities = 69/154 (44%), Positives = 103/154 (66%), Gaps = 1/154 (0%) Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87 + + T + T+++ W+R SL + +G +CC +E R+D +R+G PR Sbjct: 7 PLLDQTTKNSVISTTLNDFSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66 Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146 +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG Sbjct: 67 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126 Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 D+++PVD+Y+PGCPP EA+I I L+KKI R Sbjct: 127 DKLIPVDVYLPGCPPKPEAIIDAITKLRKKISRE 160 >gi|119491043|ref|ZP_01623201.1| NADH dehydrogenase beta subunit [Lyngbya sp. PCC 8106] gi|119453588|gb|EAW34748.1| NADH dehydrogenase beta subunit [Lyngbya sp. PCC 8106] Length = 241 Score = 222 bits (565), Expect = 2e-56, Method: Composition-based stats. Identities = 74/171 (43%), Positives = 113/171 (66%), Gaps = 4/171 (2%) Query: 8 QKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAV 67 + IS ++ + ++ +++ E++ ++T+VD L WAR SL + +G ACC + Sbjct: 3 SQSISPETGKIINPIER--PQVTQELSE-NVVLTTVDDLYNWARLSSLWPLLYGTACCFI 59 Query: 68 EMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMG 127 E R+D +RFG PR+SPRQ+D++I AGT+T K A L R+Y+QMPEP+YVI+MG Sbjct: 60 EFAALIGSRFDFDRFGLVPRSSPRQADLLITAGTITMKYAPVLVRLYEQMPEPKYVIAMG 119 Query: 128 SCANGGGYYH-YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 +C GG + S + VRG D+++PVD+Y+PGCPP EA+I I+ L+KKI Sbjct: 120 ACTITGGMFSMDSTTAVRGVDKLIPVDVYIPGCPPRPEAIIDAIIKLRKKI 170 >gi|183217745|ref|YP_001837364.1| NADH dehydrogenase subunit K [Guizotia abyssinica] gi|218527890|sp|B2LMJ7|NDHK_GUIAB RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K gi|179366260|gb|ACB86531.1| NADH dehydrogenase subunit K [Guizotia abyssinica] Length = 225 Score = 222 bits (565), Expect = 2e-56, Method: Composition-based stats. Identities = 70/149 (46%), Positives = 102/149 (68%), Gaps = 1/149 (0%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 T + T+++ L W+R SL + +G +CC +E R+D +R+G PR+SPRQ Sbjct: 12 TTQNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQ 71 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGCDRIVP 151 +D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++P Sbjct: 72 ADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIP 131 Query: 152 VDIYVPGCPPTAEALIYGILLLQKKIRRV 180 VD+Y+PGCPP EA+I I L+KKI R Sbjct: 132 VDVYLPGCPPKPEAIIDAITKLRKKISRE 160 >gi|288801144|ref|ZP_06406600.1| NADH dehydrogenase I, B/C/D subunit protein [Prevotella sp. oral taxon 299 str. F0039] gi|288332078|gb|EFC70560.1| NADH dehydrogenase I, B/C/D subunit protein [Prevotella sp. oral taxon 299 str. F0039] Length = 210 Score = 222 bits (565), Expect = 2e-56, Method: Composition-based stats. Identities = 78/161 (48%), Positives = 110/161 (68%), Gaps = 3/161 (1%) Query: 21 KVDADFSRISSEITHKGF--LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78 K + +I+ E+ G + S+DQL+ W R+ SL +TF +CC +E M RYD Sbjct: 17 KDNETLEQIAQELHEGGVNVVTGSLDQLINWGRSNSLWSLTFATSCCGIEFMSVGCARYD 76 Query: 79 LERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137 RFGF R SPRQ+D+++ AGT+TNKMA +R+YD+M EP+Y+I++G CA GG + Sbjct: 77 FARFGFEVTRNSPRQADLIMCAGTITNKMAPVFKRLYDEMAEPKYIIAIGGCAISGGPFK 136 Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 SY VVRG + IVPVD+YVPGCPP EA++YG++ LQ+KI+ Sbjct: 137 ASYHVVRGINEIVPVDVYVPGCPPRPEAILYGMMQLQRKIK 177 >gi|170079340|ref|YP_001735978.1| NADH dehydrogenase subunit B [Synechococcus sp. PCC 7002] gi|218527931|sp|B1XMK4|NDHK_SYNP2 RecName: Full=NAD(P)H-quinone oxidoreductase subunit K; AltName: Full=NAD(P)H dehydrogenase I subunit K; AltName: Full=NDH-1 subunit K; Short=NDH-K gi|169887009|gb|ACB00723.1| NADH dehydrogenase subunit K [Synechococcus sp. PCC 7002] Length = 243 Score = 222 bits (565), Expect = 2e-56, Method: Composition-based stats. Identities = 72/155 (46%), Positives = 109/155 (70%), Gaps = 2/155 (1%) Query: 27 SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP 86 S+++ +++ ++T+VD L WAR SL + +G ACC +E R+D +RFG P Sbjct: 23 SQVTQDLSE-NVILTTVDDLYNWARLSSLWPLLYGTACCFIEFAALLGSRFDFDRFGLVP 81 Query: 87 RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRG 145 R+SPRQ+D+++VAGT+T KMA AL R+Y++MPEP+YVI+MG+C GG + S + VRG Sbjct: 82 RSSPRQADLILVAGTVTMKMAPALVRLYEEMPEPKYVIAMGACTITGGMFSSDSTTAVRG 141 Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 D+++PVD+Y+PGCPP EA+I I+ L+KK+ Sbjct: 142 VDKLIPVDLYIPGCPPRPEAIIDAIIKLRKKVSNE 176 >gi|13518424|ref|NP_084784.1| NADH dehydrogenase subunit K [Lotus japonicus] gi|18202728|sp|Q9BBT7|NDHK_LOTJA RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K gi|13358965|dbj|BAB33182.1| photosystem II G protein [Lotus japonicus] Length = 230 Score = 222 bits (565), Expect = 2e-56, Method: Composition-based stats. Identities = 68/154 (44%), Positives = 103/154 (66%), Gaps = 1/154 (0%) Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87 + T + T+++ L W+R SL + +G +CC +E R+D +R+G PR Sbjct: 7 PLIDRTTQNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66 Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146 +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG Sbjct: 67 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126 Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 D+++PVD+Y+PGCPP E+++ I L+KKI R Sbjct: 127 DKLIPVDVYLPGCPPKPESILDAITKLRKKISRE 160 >gi|290489720|gb|ADD31244.1| NADH-plastoquinone oxidoreductase subunit K protein [Nerium oleander] Length = 246 Score = 222 bits (565), Expect = 2e-56, Method: Composition-based stats. Identities = 69/154 (44%), Positives = 103/154 (66%), Gaps = 1/154 (0%) Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87 + + + T+++ L W+R SL + +G +CC +E R+D +R+G PR Sbjct: 26 PLLNRTVQNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 85 Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146 +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG Sbjct: 86 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 145 Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 D+++PVD+Y+PGCPP EA+I I L+KKI R Sbjct: 146 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 179 >gi|66876431|gb|AAY57993.1| NdhK [Operculina aequisepala] Length = 235 Score = 222 bits (565), Expect = 2e-56, Method: Composition-based stats. Identities = 69/160 (43%), Positives = 105/160 (65%), Gaps = 1/160 (0%) Query: 22 VDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLER 81 +++ + + T+++ L W+R SL + +G +CC +E R+D +R Sbjct: 1 MNSIQFPLLDRTAKNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDR 60 Query: 82 FGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSY 140 +G PR+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SY Sbjct: 61 YGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSY 120 Query: 141 SVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 S VRG D+++PVD+Y+PGCPP EA+I I L+KKI R Sbjct: 121 STVRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 160 >gi|197359657|gb|ACH69871.1| NADH-plastoquinone oxidoreductase subunit K [Aneura sp. Wickett 473] Length = 231 Score = 222 bits (565), Expect = 2e-56, Method: Composition-based stats. Identities = 72/160 (45%), Positives = 106/160 (66%), Gaps = 2/160 (1%) Query: 22 VDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLER 81 D F +T ++T+++ WAR SL + +G +CC +E R+D +R Sbjct: 2 NDTKFHPFDKTVTD-SIILTTLNDFSNWARLSSLWPLLYGTSCCFIEFASLIGSRFDFDR 60 Query: 82 FGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSY 140 +G PR+SPRQ+D++I AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SY Sbjct: 61 YGLVPRSSPRQADLVITAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSY 120 Query: 141 SVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 + VRG D+++PVDIY+PGCPP EA+I ++ L+KKI R Sbjct: 121 TTVRGVDKLIPVDIYLPGCPPRPEAIIDAVIKLRKKIARE 160 >gi|14017576|ref|NP_114263.1| NADH dehydrogenase subunit K [Triticum aestivum] gi|556460|gb|AAA84731.1| thylakoid membrane protein [Triticum aestivum] gi|13928209|dbj|BAB47038.1| NADH dehydrogenase 27kDa subunit [Triticum aestivum] Length = 245 Score = 222 bits (565), Expect = 2e-56, Method: Composition-based stats. Identities = 75/181 (41%), Positives = 112/181 (61%), Gaps = 2/181 (1%) Query: 1 MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTF 60 M LT K G+ S +F + + + + T+ + L W+R SL + + Sbjct: 1 MVLTEYLDKKKEGKDSIETVMNLIEFPLL-DQTSSNSVISTTPNDLSNWSRLSSLWPLLY 59 Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 G +CC +E R+D +R+G PR+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP Sbjct: 60 GTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEP 119 Query: 121 RYVISMGSCANGGGYYH-YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179 +YVI+MG+C GG + SYS VRG D+++PVD+Y+PGCPP EA+I + L+KKI R Sbjct: 120 KYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEAVIDALTKLRKKISR 179 Query: 180 V 180 Sbjct: 180 E 180 >gi|139387440|ref|YP_001122794.1| NADH-plastoquinone oxidoreductase subunit K [Phaseolus vulgaris] gi|218527930|sp|A4GG93|NDHK_PHAVU RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K gi|112030962|gb|ABH88074.1| NADH-plastoquinone oxidoreductase subunit K [Phaseolus vulgaris] gi|158187161|gb|ABW22794.1| NADH-plastoquinone oxidoreductase subunit K [Phaseolus vulgaris] Length = 212 Score = 222 bits (565), Expect = 2e-56, Method: Composition-based stats. Identities = 69/154 (44%), Positives = 103/154 (66%), Gaps = 1/154 (0%) Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87 + + T + T+++ W+R SL + +G +CC +E R+D +R+G PR Sbjct: 7 PLLDQTTQNSVISTTLNDFSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66 Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146 +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG Sbjct: 67 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126 Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 D+++PVD+Y+PGCPP EA+I I L+KKI R Sbjct: 127 DKLIPVDVYLPGCPPKPEAIIDAITKLRKKISRE 160 >gi|66876443|gb|AAY58001.1| NdhK [Falkia repens] Length = 235 Score = 222 bits (565), Expect = 2e-56, Method: Composition-based stats. Identities = 69/154 (44%), Positives = 103/154 (66%), Gaps = 1/154 (0%) Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87 + + + T+++ L W+R SL + +G +CC +E R+D +R+G PR Sbjct: 7 PLLDQTAKNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66 Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146 +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG Sbjct: 67 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126 Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 D+++PVD+Y+PGCPP EA+I I L+KKI R Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 160 >gi|227536077|ref|ZP_03966126.1| NADH:ubiquinone oxidoreductase [Sphingobacterium spiritivorum ATCC 33300] gi|227243974|gb|EEI93989.1| NADH:ubiquinone oxidoreductase [Sphingobacterium spiritivorum ATCC 33300] Length = 167 Score = 222 bits (565), Expect = 2e-56, Method: Composition-based stats. Identities = 87/153 (56%), Positives = 112/153 (73%), Gaps = 1/153 (0%) Query: 29 ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88 I +++ + G +V +D L+ WAR S+ ++FG+ACCA+EMM A YDL+R G PR Sbjct: 3 IENQLQNNGVVVAKLDDLLNWARLSSMWPVSFGIACCAIEMMGAMASTYDLDRLGVFPRP 62 Query: 89 SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCD 147 SPRQSDVMI+AGT+T KMA +R++Y+QMPEP+YVISMGSC+N GG Y Y VV+G D Sbjct: 63 SPRQSDVMIIAGTVTFKMADRIRKLYEQMPEPKYVISMGSCSNCGGPYWQHGYHVVKGVD 122 Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 RI+PVD+YV GCPP EALI L LQKKI + Sbjct: 123 RIIPVDVYVQGCPPRPEALIGAFLELQKKIEKE 155 >gi|301167766|emb|CBW27350.1| NADH dehydrogenase I chain B [Bacteriovorax marinus SJ] Length = 168 Score = 222 bits (565), Expect = 2e-56, Method: Composition-based stats. Identities = 83/161 (51%), Positives = 108/161 (67%), Gaps = 2/161 (1%) Query: 26 FSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF- 84 ++ + ++ +D W R SL MTFGLACCA+EMM +YDLERFG Sbjct: 1 MNKERKTLMQDSVVLMKLDDFFNWGRKNSLWPMTFGLACCAIEMMATGASKYDLERFGCG 60 Query: 85 APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVV 143 A A+PR++D+MIVAGT+T KMA ++ +Y+QM EP+YVISMGSCAN GG Y Y V+ Sbjct: 61 AFMATPRRADLMIVAGTVTLKMAPRIKTLYEQMAEPKYVISMGSCANKGGPYWQHGYHVL 120 Query: 144 RGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 +G D IVPVD+YVPGCPP EALI G++ LQKKI ++ Sbjct: 121 KGVDEIVPVDVYVPGCPPRPEALIEGLMTLQKKIANERLLR 161 >gi|56750378|ref|YP_171079.1| NADH dehydrogenase subunit B [Synechococcus elongatus PCC 6301] gi|81299990|ref|YP_400198.1| NADH dehydrogenase subunit B [Synechococcus elongatus PCC 7942] gi|81596704|sp|Q5N560|NDHK_SYNP6 RecName: Full=NAD(P)H-quinone oxidoreductase subunit K; AltName: Full=NAD(P)H dehydrogenase I subunit K; AltName: Full=NDH-1 subunit K; Short=NDH-K gi|123556951|sp|Q31P08|NDHK_SYNE7 RecName: Full=NAD(P)H-quinone oxidoreductase subunit K; AltName: Full=NAD(P)H dehydrogenase I subunit K; AltName: Full=NDH-1 subunit K; Short=NDH-K gi|56685337|dbj|BAD78559.1| NADH dehydrogenase subunit NdhK [Synechococcus elongatus PCC 6301] gi|81168871|gb|ABB57211.1| NADH-quinone oxidoreductase, B subunit [Synechococcus elongatus PCC 7942] Length = 235 Score = 222 bits (565), Expect = 3e-56, Method: Composition-based stats. Identities = 72/163 (44%), Positives = 106/163 (65%), Gaps = 1/163 (0%) Query: 16 SCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMP 75 + E + ++ + ++T++D L WAR SL + +G ACC +E Sbjct: 4 TNPAEIRNPAAPPEITQGLSENVILTTLDDLYNWARLSSLWPLMYGTACCFIEFAALIGS 63 Query: 76 RYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY 135 R+D +RFG PR SPRQ+D++I AGT+T KMA AL R+Y+QMPEP+YVI+MG+C GG Sbjct: 64 RFDFDRFGLVPRCSPRQADLLITAGTVTMKMAPALVRLYEQMPEPKYVIAMGACTITGGM 123 Query: 136 YH-YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 + S + VRG D+++PVD+Y+PGCPP EA+I I+ L+KK+ Sbjct: 124 FSADSTTTVRGVDKLLPVDVYIPGCPPRPEAIIDAIVKLRKKV 166 >gi|154795255|ref|NP_862758.2| NADH dehydrogenase subunit K [Calycanthus floridus var. glaucus] gi|218527905|sp|Q7YJW8|NDHK_CALFG RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K Length = 225 Score = 222 bits (565), Expect = 3e-56, Method: Composition-based stats. Identities = 69/160 (43%), Positives = 106/160 (66%), Gaps = 1/160 (0%) Query: 22 VDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLER 81 +++ + T + T+++ L W+R SL + +G +CC +E R+D +R Sbjct: 1 MNSTEFPLLDRTTQNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDR 60 Query: 82 FGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSY 140 +G PR+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SY Sbjct: 61 YGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSY 120 Query: 141 SVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 S VRG D+++PVD+Y+PGCPP EA+I I L+KK+ R Sbjct: 121 STVRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKKVSRE 160 >gi|66876438|gb|AAY57998.1| NdhK [Jacquemontia tamnifolia] Length = 224 Score = 222 bits (565), Expect = 3e-56, Method: Composition-based stats. Identities = 68/151 (45%), Positives = 101/151 (66%), Gaps = 1/151 (0%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP 90 + + T++ L W+R SL + +G +CC +E R+D +R+G PR+SP Sbjct: 10 DQTAKNSVISTTLTDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSP 69 Query: 91 RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGCDRI 149 RQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D++ Sbjct: 70 RQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKL 129 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 +PVD+Y+PGCPP EA++ I L+KKI R Sbjct: 130 IPVDVYLPGCPPKPEAILDAITKLRKKISRE 160 >gi|1709406|sp|P52766|NDHK_LUPLU RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K gi|881443|gb|AAB86906.1| NADH-ubiquinone oxidoreductase subunit [Lupinus luteus] Length = 226 Score = 222 bits (565), Expect = 3e-56, Method: Composition-based stats. Identities = 69/154 (44%), Positives = 104/154 (67%), Gaps = 1/154 (0%) Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87 + T + T++++L W+R SL + +G +CC +E R+D +R+G PR Sbjct: 7 PLRDRTTQNSVISTTLNELSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66 Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146 +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI++G+C GG + SYS VRG Sbjct: 67 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAIGACTITGGMFSTDSYSTVRGV 126 Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 D+++PVD+Y+PGCPP EA+I I L+KKI R Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 160 >gi|290489722|gb|ADD31245.1| NADH-plastoquinone oxidoreductase subunit K protein [Rhododendron simsii] Length = 225 Score = 222 bits (565), Expect = 3e-56, Method: Composition-based stats. Identities = 71/154 (46%), Positives = 104/154 (67%), Gaps = 1/154 (0%) Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87 + IT + T+++ L W+R SL + +G +CC +E R+D +R+G PR Sbjct: 7 PVLDRITQNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66 Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146 +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG Sbjct: 67 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126 Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 D+++PVD+Y+PGCPP EA+I I L+KKI R Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 160 >gi|83774873|dbj|BAE64996.1| unnamed protein product [Aspergillus oryzae] Length = 176 Score = 222 bits (565), Expect = 3e-56, Method: Composition-based stats. Identities = 104/146 (71%), Positives = 122/146 (83%) Query: 39 LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIV 98 ++T+ DQL+ WAR GSL +TF LACC +EMM SMPRYD +R G RASPRQ+DVMIV Sbjct: 26 ILTTTDQLINWARQGSLWPLTFALACCGIEMMHVSMPRYDQDRLGIIFRASPRQADVMIV 85 Query: 99 AGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPG 158 AGT+TNKMA ALR++YDQMP+P++VISMGSCANGGGYY+YSYSVVRG DR+VPVDIYVPG Sbjct: 86 AGTVTNKMAPALRQLYDQMPDPKWVISMGSCANGGGYYYYSYSVVRGVDRVVPVDIYVPG 145 Query: 159 CPPTAEALIYGILLLQKKIRRVGNVK 184 CPPT EAL+Y I LQKKIRR + Sbjct: 146 CPPTPEALMYAIFQLQKKIRRTKVTR 171 >gi|300772047|ref|ZP_07081917.1| NADH dehydrogenase I [Sphingobacterium spiritivorum ATCC 33861] gi|300760350|gb|EFK57176.1| NADH dehydrogenase I [Sphingobacterium spiritivorum ATCC 33861] Length = 167 Score = 222 bits (565), Expect = 3e-56, Method: Composition-based stats. Identities = 87/153 (56%), Positives = 112/153 (73%), Gaps = 1/153 (0%) Query: 29 ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88 I +++ + G +V +D L+ WAR S+ ++FG+ACCA+EMM A YDL+R G PR Sbjct: 3 IENQLQNNGVVVAKLDDLLNWARLSSMWPVSFGIACCAIEMMGAMASTYDLDRLGVFPRP 62 Query: 89 SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCD 147 SPRQSDVMI+AGT+T KMA +R++Y+QMPEP+YVISMGSC+N GG Y Y VV+G D Sbjct: 63 SPRQSDVMIIAGTVTFKMADRIRKLYEQMPEPKYVISMGSCSNCGGPYWQHGYHVVKGVD 122 Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 RI+PVD+YV GCPP EALI L LQKKI + Sbjct: 123 RIIPVDVYVQGCPPRPEALIGAFLELQKKIEKE 155 >gi|218527958|sp|Q33C30|NDHK_NICTO RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K Length = 225 Score = 222 bits (565), Expect = 3e-56, Method: Composition-based stats. Identities = 69/160 (43%), Positives = 105/160 (65%), Gaps = 1/160 (0%) Query: 22 VDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLER 81 +++ + + T+++ L W+R SL + +G +CC +E R+D +R Sbjct: 1 MNSIQFPLLDRTAQNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDR 60 Query: 82 FGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSY 140 +G PR+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SY Sbjct: 61 YGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSY 120 Query: 141 SVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 S VRG D+++PVD+Y+PGCPP EA+I I L+KKI R Sbjct: 121 STVRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 160 >gi|307154794|ref|YP_003890178.1| NADH-quinone oxidoreductase subunit B [Cyanothece sp. PCC 7822] gi|306985022|gb|ADN16903.1| NADH-quinone oxidoreductase, B subunit [Cyanothece sp. PCC 7822] Length = 248 Score = 221 bits (564), Expect = 3e-56, Method: Composition-based stats. Identities = 75/175 (42%), Positives = 114/175 (65%), Gaps = 4/175 (2%) Query: 4 TTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLA 63 TT + I Q L ++ ++++ +++ ++T+VD L WAR SL M +G A Sbjct: 6 TTQSDLFIQQQKEQILNPINR--TKVTQDLSE-NVILTTVDDLYNWARLSSLWPMLYGTA 62 Query: 64 CCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYV 123 CC +E R+D +RFG PR+SPRQ+D++I AGT+T KM AL R+Y+QMP+P+YV Sbjct: 63 CCFIEFAALIGSRFDFDRFGLVPRSSPRQADLIITAGTITMKMGPALVRLYEQMPDPKYV 122 Query: 124 ISMGSCANGGGYY-HYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 I+MG+C GG + S + VRG D+++PVD+Y+PGCPP EA+ I+ L+KK+ Sbjct: 123 IAMGACTITGGMFSSDSTTAVRGVDKLIPVDVYIPGCPPRPEAIFDAIIKLRKKV 177 >gi|325298883|ref|YP_004258800.1| NAD(P)H-quinone oxidoreductase subunit K [Bacteroides salanitronis DSM 18170] gi|324318436|gb|ADY36327.1| NAD(P)H-quinone oxidoreductase subunit K [Bacteroides salanitronis DSM 18170] Length = 205 Score = 221 bits (564), Expect = 3e-56, Method: Composition-based stats. Identities = 69/161 (42%), Positives = 108/161 (67%), Gaps = 3/161 (1%) Query: 21 KVDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78 K + R+ ++ G ++T+ D+L+ W R+ S+ + G +CCA+E M RYD Sbjct: 15 KNNDYLERLVQQVNQDGAGVILTTFDELINWGRSNSVWGLLLGTSCCAIEFMALGAARYD 74 Query: 79 LERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137 + RFGF R SPRQ+DV++V GT+T + A ++R+YDQM EP+YV+++G C GG + Sbjct: 75 MARFGFEVTRNSPRQADVLVVMGTITYRTAPVMKRLYDQMAEPKYVVAVGGCTISGGPFI 134 Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 SY+VV G D+++PVD+Y+PGCPP EA YG++ LQ+K++ Sbjct: 135 KSYNVVNGIDKVIPVDVYIPGCPPRPEAFYYGLMQLQRKMK 175 >gi|218527882|sp|A2T337|NDHK_ANGEV RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K gi|110628308|gb|ABG79604.1| NADH-plastoquinone oxidoreductase subunit K [Angiopteris evecta] Length = 250 Score = 221 bits (564), Expect = 3e-56, Method: Composition-based stats. Identities = 73/178 (41%), Positives = 110/178 (61%), Gaps = 12/178 (6%) Query: 4 TTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLA 63 + +I+ S SL+K + T+++ WAR SL + +G + Sbjct: 12 IKSDIPLINSMESYSLDKN-----------MSNSIISTNLNDFSNWARLSSLWPLLYGTS 60 Query: 64 CCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYV 123 CC +E R+D +R+G PR+SPRQ+D++I AGT+T KMA +L R+Y+QMPEP+YV Sbjct: 61 CCFIEFASLIGSRFDFDRYGLVPRSSPRQADLIITAGTVTMKMAPSLVRLYEQMPEPKYV 120 Query: 124 ISMGSCANGGGYYH-YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 I+MG+C GG + SYS VRG D+++PVD+Y+PGCPP EA+I I+ L+KK+ + Sbjct: 121 IAMGACTITGGMFSTDSYSTVRGIDKLIPVDVYLPGCPPKPEAIIDAIIKLRKKVAQE 178 >gi|295136907|ref|YP_003587739.1| NADH dehydrogenase subunit K [Lathyrus sativus] gi|293338629|gb|ADE43601.1| NADH dehydrogenase subunit K [Lathyrus sativus] Length = 225 Score = 221 bits (564), Expect = 3e-56, Method: Composition-based stats. Identities = 70/154 (45%), Positives = 104/154 (67%), Gaps = 1/154 (0%) Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87 + + T + T+++ L W+R SL + +G +CC +E R+D +R+G PR Sbjct: 7 PLLDQKTKNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66 Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146 +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG Sbjct: 67 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126 Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 D+++PVD+Y+PGCPP EA+I I L+KKI R Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 160 >gi|189346374|ref|YP_001942903.1| NADH dehydrogenase subunit B [Chlorobium limicola DSM 245] gi|238055283|sp|B3EI94|NUOB_CHLL2 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|189340521|gb|ACD89924.1| NADH-quinone oxidoreductase, B subunit [Chlorobium limicola DSM 245] Length = 189 Score = 221 bits (564), Expect = 3e-56, Method: Composition-based stats. Identities = 89/147 (60%), Positives = 112/147 (76%), Gaps = 1/147 (0%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 IT +VTSVD ++ WAR SL M FGLACCA+EMM + YDLERFG PR+SPRQ Sbjct: 8 ITKHNVVVTSVDNVLNWARLSSLWPMGFGLACCAIEMMATNASNYDLERFGIFPRSSPRQ 67 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVP 151 SD+MIVAGT+T KMA + R+Y+QMPEPRYV+SMGSC+N GG Y Y V++G DR++P Sbjct: 68 SDLMIVAGTVTMKMAERVVRLYEQMPEPRYVLSMGSCSNCGGPYWEHGYHVLKGVDRVIP 127 Query: 152 VDIYVPGCPPTAEALIYGILLLQKKIR 178 VD+YVPGCPP E+LI G++ +Q+ IR Sbjct: 128 VDVYVPGCPPRPESLIGGLMKVQELIR 154 >gi|46134967|ref|XP_389508.1| hypothetical protein FG09332.1 [Gibberella zeae PH-1] Length = 233 Score = 221 bits (564), Expect = 3e-56, Method: Composition-based stats. Identities = 110/143 (76%), Positives = 124/143 (86%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 + +T+VD+L WARTGSL MTF LACC +EMM SMPRYD +R G RASPRQSDVMI Sbjct: 81 YALTTVDKLANWARTGSLWPMTFALACCGIEMMHVSMPRYDQDRLGIIFRASPRQSDVMI 140 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYY+YSYSVVRG DRI+PVDIYVP Sbjct: 141 VAGTLTNKMAPALRQVYDQMPEPRWVISMGSCANGGGYYYYSYSVVRGVDRIIPVDIYVP 200 Query: 158 GCPPTAEALIYGILLLQKKIRRV 180 GCPPTAEAL+YG+ LQ+KIR+ Sbjct: 201 GCPPTAEALMYGVFQLQRKIRKE 223 >gi|112253755|gb|ABI14476.1| NADH-plastoquinone oxidoreductase subunit K [Piper cenocladum] Length = 289 Score = 221 bits (564), Expect = 3e-56, Method: Composition-based stats. Identities = 68/154 (44%), Positives = 103/154 (66%), Gaps = 1/154 (0%) Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87 + T + T+++ L W+R SL + +G +CC +E R+D +R+G PR Sbjct: 67 PLLDRTTQSSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 126 Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146 +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG Sbjct: 127 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 186 Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 D+++PVD+Y+PGCPP EA++ I L+KK+ R Sbjct: 187 DKLIPVDVYLPGCPPKPEAILDAITKLRKKVSRE 220 >gi|324522539|gb|ADY48077.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 7 [Ascaris suum] Length = 210 Score = 221 bits (564), Expect = 3e-56, Method: Composition-based stats. Identities = 95/156 (60%), Positives = 124/156 (79%) Query: 27 SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP 86 S + ++ + + VD ++ + SL +TFGLACCAVEMM + PRYD++R+G Sbjct: 48 SPFTGPMSTGEYALARVDDVINLCQRTSLWPLTFGLACCAVEMMHFAAPRYDMDRYGVVF 107 Query: 87 RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGC 146 RASPRQ D++ +AGT+TNKMA ALRR++DQMPE ++VISMGSCANGGGYYHY+YSV++GC Sbjct: 108 RASPRQVDLIFIAGTVTNKMAPALRRIFDQMPEAKWVISMGSCANGGGYYHYAYSVLKGC 167 Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182 DR++PVDIYVPGCPPTAEAL+YG+L LQKKI+R Sbjct: 168 DRVIPVDIYVPGCPPTAEALLYGVLQLQKKIKRKRE 203 >gi|94502495|ref|YP_588121.1| NADH dehydrogenase subunit K [Helianthus annuus] gi|122179574|sp|Q1KXV5|NDHK_HELAN RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K gi|88656899|gb|ABD47150.1| NADH-plastoquinone oxidoreductase subunit K [Helianthus annuus] Length = 225 Score = 221 bits (564), Expect = 3e-56, Method: Composition-based stats. Identities = 70/149 (46%), Positives = 102/149 (68%), Gaps = 1/149 (0%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 T + T+++ L W+R SL + +G +CC +E R+D +R+G PR+SPRQ Sbjct: 12 TTQNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQ 71 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGCDRIVP 151 +D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++P Sbjct: 72 ADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIP 131 Query: 152 VDIYVPGCPPTAEALIYGILLLQKKIRRV 180 VD+Y+PGCPP EA+I I L+KKI R Sbjct: 132 VDVYLPGCPPKPEAIIDAITKLRKKISRE 160 >gi|218511714|sp|P06409|NDHK_TOBAC RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K gi|218527957|sp|Q3C1J8|NDHK_NICSY RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K Length = 225 Score = 221 bits (564), Expect = 3e-56, Method: Composition-based stats. Identities = 70/160 (43%), Positives = 106/160 (66%), Gaps = 1/160 (0%) Query: 22 VDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLER 81 +++ + T + T+++ L W+R SL + +G +CC +E R+D +R Sbjct: 1 MNSIQFPLLDRTTQNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDR 60 Query: 82 FGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSY 140 +G PR+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SY Sbjct: 61 YGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSY 120 Query: 141 SVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 S VRG D+++PVD+Y+PGCPP EA+I I L+KKI R Sbjct: 121 STVRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 160 >gi|290790852|gb|ADD63108.1| NADH-plastoquinone oxidoreductase subunit K [Microlaena stipoides] Length = 253 Score = 221 bits (564), Expect = 3e-56, Method: Composition-based stats. Identities = 72/181 (39%), Positives = 110/181 (60%), Gaps = 1/181 (0%) Query: 1 MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTF 60 M LT + K + + + + + + T+ + L W+R SL + + Sbjct: 8 MVLTEYSDKKKKERKDSIETVMSLIEFPLLDQTSSNSVISTTPNDLSNWSRLSSLWPLLY 67 Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 G +CC +E R+D +R+G PR+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP Sbjct: 68 GTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEP 127 Query: 121 RYVISMGSCANGGGYYH-YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179 +YVI+MG+C GG + SYS VRG D+++PVD+Y+PGCPP EA+I + L+KKI R Sbjct: 128 KYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEAVIDALTKLRKKIAR 187 Query: 180 V 180 Sbjct: 188 E 188 >gi|108773214|ref|YP_635742.1| NADH dehydrogenase subunit K [Chara vulgaris] gi|122231312|sp|Q1ACK5|NDHK_CHAVU RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K gi|77157870|gb|ABA61911.1| 27 kDa subunit of NADH-ubiquinone oxidoreductase [Chara vulgaris] Length = 244 Score = 221 bits (564), Expect = 3e-56, Method: Composition-based stats. Identities = 75/189 (39%), Positives = 120/189 (63%), Gaps = 11/189 (5%) Query: 1 MGLTTVNQKIISGQSSCSLEKVDADF------SRISSEITHKGFLVTSVDQLVTWARTGS 54 M L +N + + SL++ + DF +++I ++T+++ L WAR S Sbjct: 1 MVLVYLNSNL----NLRSLKETNHDFLINSTERLTTNQILSTSVILTTMNDLTNWARLSS 56 Query: 55 LMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVY 114 L + +G +CC +E R+D +R+G PR+SPRQ+D++I AGT+T KMA +L R+Y Sbjct: 57 LWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLIITAGTVTMKMAPSLVRLY 116 Query: 115 DQMPEPRYVISMGSCANGGGYYH-YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLL 173 +QM EP+YVI+MG+C GG + SYS VRG D+++PV++Y+PGCPP EA+I G++ L Sbjct: 117 EQMAEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVNVYLPGCPPKPEAIIDGVIKL 176 Query: 174 QKKIRRVGN 182 +K+I + Sbjct: 177 RKQIAQENT 185 >gi|218527895|sp|Q49KZ4|NDHK_EUCGG RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K Length = 225 Score = 221 bits (564), Expect = 3e-56, Method: Composition-based stats. Identities = 70/154 (45%), Positives = 104/154 (67%), Gaps = 1/154 (0%) Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87 + + T + T+++ L W+R SL + +G +CC +E R+D +R+G PR Sbjct: 7 PLLARTTQNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66 Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146 +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG Sbjct: 67 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126 Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 D+++PVD+Y+PGCPP EA+I I L+KKI R Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKIARE 160 >gi|154795238|ref|NP_777417.3| NADH dehydrogenase subunit K [Anthoceros formosae] Length = 229 Score = 221 bits (563), Expect = 3e-56, Method: Composition-based stats. Identities = 72/159 (45%), Positives = 106/159 (66%), Gaps = 1/159 (0%) Query: 27 SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP 86 S + E T ++T+ + WAR SL + +G +CC +E R+D +R+G P Sbjct: 6 SSLPDETTSDSIILTTFNDFSNWARLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVP 65 Query: 87 RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRG 145 R+SPRQ+D++I AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG Sbjct: 66 RSSPRQADLIITAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRG 125 Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 D+++PVDIY+PGCPP EA+I I+ L+K + R + + Sbjct: 126 VDKLIPVDIYLPGCPPKPEAIIDAIIKLRKGVAREVHER 164 >gi|281190728|ref|YP_003330965.1| NADH dehydrogenase subunit K [Parthenium argentatum] gi|269924841|gb|ACZ52714.1| NADH dehydrogenase subunit K [Parthenium argentatum] Length = 225 Score = 221 bits (563), Expect = 3e-56, Method: Composition-based stats. Identities = 70/149 (46%), Positives = 102/149 (68%), Gaps = 1/149 (0%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 T + T+++ L W+R SL + +G +CC +E R+D +R+G PR+SPRQ Sbjct: 12 TTQNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQ 71 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGCDRIVP 151 +D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++P Sbjct: 72 ADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIP 131 Query: 152 VDIYVPGCPPTAEALIYGILLLQKKIRRV 180 VD+Y+PGCPP EA+I I L+KKI R Sbjct: 132 VDVYLPGCPPKPEAIIDAITKLRKKISRE 160 >gi|84682208|gb|ABC60462.1| NADH-plastoquinone oxidoreductase subunit K [Nuphar advena] Length = 283 Score = 221 bits (563), Expect = 3e-56, Method: Composition-based stats. Identities = 69/149 (46%), Positives = 102/149 (68%), Gaps = 1/149 (0%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 T + T+++ L W+R SL + +G +CC +E R+D +R+G PR+SPRQ Sbjct: 70 TTPNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQ 129 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGCDRIVP 151 +D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++P Sbjct: 130 ADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIP 189 Query: 152 VDIYVPGCPPTAEALIYGILLLQKKIRRV 180 VD+Y+PGCPP EA+I I L+KK+ R Sbjct: 190 VDVYLPGCPPKPEAIIDAITKLRKKVSRE 218 >gi|317121157|ref|YP_004101160.1| NADH dehydrogenase subunit B [Thermaerobacter marianensis DSM 12885] gi|315591137|gb|ADU50433.1| NADH dehydrogenase subunit B [Thermaerobacter marianensis DSM 12885] Length = 193 Score = 221 bits (563), Expect = 4e-56, Method: Composition-based stats. Identities = 82/145 (56%), Positives = 106/145 (73%) Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVM 96 G + T++ LV W R SL ++ FG+ACCA+EMM A R DL+R G RASPRQ+D+M Sbjct: 46 GVITTNLQTLVNWGRKNSLWYLLFGIACCAIEMMAAGASRIDLDRLGSVFRASPRQADLM 105 Query: 97 IVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV 156 IVAGT+T KMA ++ +YDQM EP+YVI+MG+CA+ GG Y+ Y+VV G D+IVPVD+YV Sbjct: 106 IVAGTVTEKMAPVIKTLYDQMAEPKYVIAMGACASNGGPYYQGYNVVDGVDKIVPVDVYV 165 Query: 157 PGCPPTAEALIYGILLLQKKIRRVG 181 GCPP EALIY I+ LQ K+ R Sbjct: 166 AGCPPRPEALIYAIMKLQDKVARAN 190 >gi|328953790|ref|YP_004371124.1| NAD(P)H-quinone oxidoreductase subunit K [Desulfobacca acetoxidans DSM 11109] gi|328454114|gb|AEB09943.1| NAD(P)H-quinone oxidoreductase subunit K [Desulfobacca acetoxidans DSM 11109] Length = 174 Score = 221 bits (563), Expect = 4e-56, Method: Composition-based stats. Identities = 82/150 (54%), Positives = 109/150 (72%), Gaps = 2/150 (1%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89 E L TS++++V WAR SL TFGLACCA+EM+ + RYD+ RFG RAS Sbjct: 4 EEHLGNNILTTSLEKMVDWARKNSLWPATFGLACCAIEMIVTAANRYDIARFGMEAFRAS 63 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQ+D+MIVAGT+T KM A+ R+Y+QM EP++VI+MG+CA+ GG + SY+VV+G D+ Sbjct: 64 PRQADLMIVAGTVTKKMVPAVVRIYEQMTEPKWVIAMGACASSGGIFR-SYAVVQGIDQY 122 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRR 179 +PVD+YVPGCPP E L+YGIL L KI + Sbjct: 123 LPVDVYVPGCPPRPEGLLYGILKLHDKILK 152 >gi|15806517|ref|NP_295228.1| NADH dehydrogenase subunit B [Deinococcus radiodurans R1] gi|81624845|sp|Q9RU87|NUOB_DEIRA RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|6459265|gb|AAF11070.1|AE001994_6 NADH dehydrogenase I, B subunit [Deinococcus radiodurans R1] Length = 181 Score = 221 bits (563), Expect = 4e-56, Method: Composition-based stats. Identities = 87/154 (56%), Positives = 115/154 (74%), Gaps = 2/154 (1%) Query: 26 FSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA 85 R E+ +G L +S+++LV W R+ SL TFGLACCA+EMM ++ R D+ RFG Sbjct: 7 IDRDWQELESEGVLFSSLEKLVAWGRSNSLWPATFGLACCAIEMMSSTNARNDMSRFGSE 66 Query: 86 -PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR 144 RASPRQ+DVMIVAG L+ KMA +RRVYDQMP+P++VISMG+CA+ GG ++ Y+VV+ Sbjct: 67 VFRASPRQADVMIVAGRLSKKMAPVMRRVYDQMPDPKWVISMGACASSGGMFNN-YAVVQ 125 Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 D +VPVDI+VPGCPP EALIY ++ LQKK+R Sbjct: 126 NVDSVVPVDIFVPGCPPRPEALIYAVMQLQKKVR 159 >gi|33239776|ref|NP_874718.1| NADH dehydrogenase subunit B [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|81664982|sp|Q7VDP4|NDHK_PROMA RecName: Full=NAD(P)H-quinone oxidoreductase subunit K; AltName: Full=NAD(P)H dehydrogenase I subunit K; AltName: Full=NDH-1 subunit K; Short=NDH-K gi|33237302|gb|AAP99370.1| NAD(P)H-quinone oxidoreductase subunit K [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 242 Score = 221 bits (563), Expect = 4e-56, Method: Composition-based stats. Identities = 70/145 (48%), Positives = 102/145 (70%), Gaps = 1/145 (0%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93 + ++TS+D L WAR SL + +G ACC +E R+D +RFG PR+SPRQ+ Sbjct: 30 LSENIILTSLDDLHNWARLSSLWPLLYGTACCFIEFAALIGSRFDFDRFGLVPRSSPRQA 89 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGCDRIVPV 152 D++IVAGT+T KMA AL R+Y+QMP+P+YVI+MG+C GG + S + VRG D+++PV Sbjct: 90 DLLIVAGTVTMKMAPALVRLYEQMPDPKYVIAMGACTITGGMFSADSTTAVRGVDKLIPV 149 Query: 153 DIYVPGCPPTAEALIYGILLLQKKI 177 D+Y+PGCPP EA+ ++ L+KK+ Sbjct: 150 DLYLPGCPPRPEAIFDAVIKLRKKV 174 >gi|292559512|ref|YP_003540935.1| NADH-plastoquinone oxidoreductase subunit K [Phoenix dactylifera] gi|290790920|gb|ADD63175.1| NADH-plastoquinone oxidoreductase subunit K [Phoenix dactylifera] gi|294620581|gb|ADF28150.1| NADH-plastoquinone oxidoreductase subunit K [Phoenix dactylifera] Length = 255 Score = 221 bits (563), Expect = 4e-56, Method: Composition-based stats. Identities = 69/154 (44%), Positives = 104/154 (67%), Gaps = 1/154 (0%) Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87 + + T + T+ + L W+R SL + +G +CC +E R+D +R+G P+ Sbjct: 29 PLLDQTTPNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPK 88 Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146 +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG Sbjct: 89 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 148 Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 D+++PVD+Y+PGCPP EA+I I+ L+KKI R Sbjct: 149 DKLIPVDVYLPGCPPKPEAVIDAIMKLRKKISRE 182 >gi|290489726|gb|ADD31247.1| NADH-plastoquinone oxidoreductase subunit K protein [Bulnesia arborea] Length = 225 Score = 221 bits (563), Expect = 4e-56, Method: Composition-based stats. Identities = 70/154 (45%), Positives = 102/154 (66%), Gaps = 1/154 (0%) Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87 + T + T+++ W+R SL + +G +CC +E R+D +R+G PR Sbjct: 7 PLLDRTTKNSVISTTLNDFSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66 Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146 +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG Sbjct: 67 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126 Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 D+++PVDIY+PGCPP EA+I I L+KKI R Sbjct: 127 DKLIPVDIYLPGCPPKPEAVIDAITKLRKKISRE 160 >gi|268678781|ref|YP_003303212.1| NADH-quinone oxidoreductase subunit beta [Sulfurospirillum deleyianum DSM 6946] gi|268616812|gb|ACZ11177.1| NADH-quinone oxidoreductase, B subunit [Sulfurospirillum deleyianum DSM 6946] Length = 169 Score = 221 bits (563), Expect = 4e-56, Method: Composition-based stats. Identities = 85/147 (57%), Positives = 111/147 (75%), Gaps = 1/147 (0%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 +T+VD+LV W R+ SL +T+GLACCA+EMM RYD +RFG RASPRQ+DV++ Sbjct: 16 VALTTVDKLVQWGRSNSLWPLTYGLACCAIEMMATGASRYDFDRFGTIFRASPRQADVIV 75 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 +AGTLT K A +RR+YDQMP+P++VISMGSCAN GG ++ +Y+ V+G DRIVPVDIY+P Sbjct: 76 IAGTLTKKHAPFMRRLYDQMPDPKWVISMGSCANTGGMFN-TYATVQGADRIVPVDIYLP 134 Query: 158 GCPPTAEALIYGILLLQKKIRRVGNVK 184 GC P E L Y ++LLQKKIR + Sbjct: 135 GCAPRPETLQYALMLLQKKIRTEKASR 161 >gi|290790784|gb|ADD63041.1| NADH-plastoquinone oxidoreductase subunit K [Potamophila parviflora] Length = 253 Score = 221 bits (563), Expect = 4e-56, Method: Composition-based stats. Identities = 68/154 (44%), Positives = 103/154 (66%), Gaps = 1/154 (0%) Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87 + + + + T+ + L W+R SL + +G +CC +E R+D +R+G PR Sbjct: 35 PLLDQTSSNSVISTTPNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 94 Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146 +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG Sbjct: 95 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 154 Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 D+++PVD+Y+PGCPP EA+I + L+KKI R Sbjct: 155 DKLIPVDVYLPGCPPKPEAVIDALTKLRKKISRE 188 >gi|218527961|sp|A8Y9H4|NDHK_LOLPR RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K Length = 225 Score = 221 bits (563), Expect = 4e-56, Method: Composition-based stats. Identities = 68/154 (44%), Positives = 103/154 (66%), Gaps = 1/154 (0%) Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87 + + + + T+ + L W+R SL + +G +CC +E R+D +R+G PR Sbjct: 7 PLLDQTSSNSVISTTPNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66 Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146 +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG Sbjct: 67 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126 Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 D+++PVD+Y+PGCPP EA+I + L+KKI R Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDALTKLRKKISRE 160 >gi|159106868|ref|YP_001531287.1| NADH-plastoquinone oxidoreductase subunit K [Lolium perenne] gi|158934402|emb|CAO85980.1| NADH-plastoquinone oxidoreductase subunit K [Lolium perenne] Length = 246 Score = 221 bits (563), Expect = 4e-56, Method: Composition-based stats. Identities = 68/154 (44%), Positives = 103/154 (66%), Gaps = 1/154 (0%) Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87 + + + + T+ + L W+R SL + +G +CC +E R+D +R+G PR Sbjct: 28 PLLDQTSSNSVISTTPNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 87 Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146 +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG Sbjct: 88 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 147 Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 D+++PVD+Y+PGCPP EA+I + L+KKI R Sbjct: 148 DKLIPVDVYLPGCPPKPEAVIDALTKLRKKISRE 181 >gi|32267101|ref|NP_861133.1| NADH dehydrogenase subunit B [Helicobacter hepaticus ATCC 51449] gi|81665416|sp|Q7VFS3|NUOB_HELHP RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|32263153|gb|AAP78199.1| donor-ubiquinone reductase I [Helicobacter hepaticus ATCC 51449] Length = 169 Score = 221 bits (563), Expect = 4e-56, Method: Composition-based stats. Identities = 84/146 (57%), Positives = 115/146 (78%), Gaps = 1/146 (0%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 +++SVD+L+ W+R+ SL +T+GLACCA+EMM R+DL+RFG RASPRQSD+MI Sbjct: 16 IVLSSVDKLLNWSRSNSLWGVTYGLACCAIEMMATGGSRFDLDRFGSIFRASPRQSDLMI 75 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 ++GT+T K A +RR+YDQMPEP++VISMGSCAN GG ++ +Y+ V+G DRI+PVDIY+P Sbjct: 76 ISGTVTKKHAEFVRRLYDQMPEPKWVISMGSCANTGGMFN-TYATVQGVDRIIPVDIYLP 134 Query: 158 GCPPTAEALIYGILLLQKKIRRVGNV 183 GC P E L Y I++LQ+KIRR + Sbjct: 135 GCAPRPETLQYAIMVLQQKIRRQKAL 160 >gi|75248911|sp|Q8WI14|NDHK_PSINU RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K gi|18389468|dbj|BAB84220.1| NADH dehydrogenase 27kD subunit [Psilotum nudum] Length = 207 Score = 221 bits (563), Expect = 4e-56, Method: Composition-based stats. Identities = 71/155 (45%), Positives = 106/155 (68%), Gaps = 1/155 (0%) Query: 27 SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP 86 S +S T ++T+++ WAR SL + +G +CC +E R+D +R+G P Sbjct: 10 SLVSKPNTSNSIILTNLNDFSNWARLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVP 69 Query: 87 RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRG 145 R+SPRQ+D++I AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG Sbjct: 70 RSSPRQADLIITAGTVTMKMAPSLIRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRG 129 Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 D+++PVDIY+PGCPP EA+I ++ L+KK+ + Sbjct: 130 VDKLIPVDIYLPGCPPKPEAIIDAVIKLRKKVAQE 164 >gi|94985017|ref|YP_604381.1| NADH-quinone oxidoreductase, B subunit [Deinococcus geothermalis DSM 11300] gi|238055292|sp|Q1IZX2|NUOB_DEIGD RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|94555298|gb|ABF45212.1| NADH dehydrogenase subunit B [Deinococcus geothermalis DSM 11300] Length = 178 Score = 221 bits (563), Expect = 4e-56, Method: Composition-based stats. Identities = 87/154 (56%), Positives = 116/154 (75%), Gaps = 2/154 (1%) Query: 26 FSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA 85 F R E+ +G L +++++LV W R+ SL TFGLACCA+EMM ++ R DL RFG Sbjct: 7 FDRDWQELESEGVLFSTLEKLVAWGRSNSLWPATFGLACCAIEMMSSTDGRNDLSRFGSE 66 Query: 86 -PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR 144 RASPRQ+DVMIVAG L+ KMA +RRVYDQMP+P++VISMG+CA+ GG ++ Y+VV+ Sbjct: 67 VFRASPRQADVMIVAGRLSKKMAPIMRRVYDQMPDPKWVISMGACASSGGMFNN-YAVVQ 125 Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 D +VPVD++VPGCPP EALIY ++ LQKK+R Sbjct: 126 NVDHVVPVDVFVPGCPPRPEALIYAVMQLQKKVR 159 >gi|194476962|ref|YP_002049141.1| NADH dehydrogenase beta subunit [Paulinella chromatophora] gi|218527929|sp|B1X4R2|NDHK_PAUCH RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, organellar chromatophore; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K gi|171191969|gb|ACB42931.1| NADH dehydrogenase beta subunit [Paulinella chromatophora] Length = 246 Score = 221 bits (563), Expect = 4e-56, Method: Composition-based stats. Identities = 71/145 (48%), Positives = 102/145 (70%), Gaps = 1/145 (0%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93 + ++TS+D L WAR SL + +G ACC +E R+D +RFG PR+SPRQ+ Sbjct: 28 LSENIILTSLDDLHNWARLSSLWPLLYGTACCFIEFAALIGSRFDFDRFGLVPRSSPRQA 87 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGCDRIVPV 152 D++IVAGT+T KMA AL R+Y+QMPEP+YVI+MG+C GG + S + VRG D+++PV Sbjct: 88 DLIIVAGTVTMKMAPALVRLYEQMPEPKYVIAMGACTITGGMFSSDSTTAVRGVDKLIPV 147 Query: 153 DIYVPGCPPTAEALIYGILLLQKKI 177 D+Y+PGCPP EA+ ++ L+KK+ Sbjct: 148 DLYLPGCPPRPEAIFDAVIKLRKKV 172 >gi|154813768|ref|NP_569633.2| NADH dehydrogenase subunit K [Psilotum nudum] Length = 203 Score = 221 bits (563), Expect = 4e-56, Method: Composition-based stats. Identities = 71/155 (45%), Positives = 106/155 (68%), Gaps = 1/155 (0%) Query: 27 SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP 86 S +S T ++T+++ WAR SL + +G +CC +E R+D +R+G P Sbjct: 6 SLVSKPNTSNSIILTNLNDFSNWARLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVP 65 Query: 87 RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRG 145 R+SPRQ+D++I AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG Sbjct: 66 RSSPRQADLIITAGTVTMKMAPSLIRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRG 125 Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 D+++PVDIY+PGCPP EA+I ++ L+KK+ + Sbjct: 126 VDKLIPVDIYLPGCPPKPEAIIDAVIKLRKKVAQE 160 >gi|81176254|ref|YP_398333.1| NADH dehydrogenase subunit K [Lactuca sativa] gi|122212029|sp|Q332X4|NDHK_LACSA RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K gi|78675172|dbj|BAE47598.1| NAD(P)H-quinone oxidoreductase chain K [Lactuca sativa] gi|88656987|gb|ABD47237.1| NADH-plastoquinone oxidoreductase subunit K [Lactuca sativa] Length = 225 Score = 221 bits (563), Expect = 4e-56, Method: Composition-based stats. Identities = 70/149 (46%), Positives = 102/149 (68%), Gaps = 1/149 (0%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 T + T+++ L W+R SL + +G +CC +E R+D +R+G PR+SPRQ Sbjct: 12 TTQNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQ 71 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGCDRIVP 151 +D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++P Sbjct: 72 ADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIP 131 Query: 152 VDIYVPGCPPTAEALIYGILLLQKKIRRV 180 VD+Y+PGCPP EA+I I L+KKI R Sbjct: 132 VDVYLPGCPPKPEAIIDAITKLRKKISRE 160 >gi|329957597|ref|ZP_08298072.1| putative NADH dehydrogenase I subunit B [Bacteroides clarus YIT 12056] gi|328522474|gb|EGF49583.1| putative NADH dehydrogenase I subunit B [Bacteroides clarus YIT 12056] Length = 195 Score = 221 bits (563), Expect = 4e-56, Method: Composition-based stats. Identities = 76/175 (43%), Positives = 110/175 (62%), Gaps = 3/175 (1%) Query: 5 TVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLAC 64 N K I + E ++ +++ + +D V W R+ SL +TF +C Sbjct: 6 KPNIKSIPYEEFTDNETLEKLVWELNA--GGANVALGVLDDFVNWGRSNSLWPLTFATSC 63 Query: 65 CAVEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYV 123 C +E M RYD+ RFGF RASPRQ+D+++V GT+TNKMA L+R+YDQM +P+YV Sbjct: 64 CGIEFMALGAARYDMARFGFEVARASPRQADMIMVCGTITNKMAPVLKRLYDQMADPKYV 123 Query: 124 ISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 I++G CA GG + SY VV G D+I+PVD+Y+PGCPP EA YG++ LQ+K++ Sbjct: 124 IAVGGCAVSGGPFKKSYHVVNGVDKILPVDVYIPGCPPRPEAFYYGMMQLQRKVK 178 >gi|282901528|ref|ZP_06309450.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit [Cylindrospermopsis raciborskii CS-505] gi|281193571|gb|EFA68546.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit [Cylindrospermopsis raciborskii CS-505] Length = 245 Score = 221 bits (563), Expect = 4e-56, Method: Composition-based stats. Identities = 73/157 (46%), Positives = 103/157 (65%), Gaps = 1/157 (0%) Query: 22 VDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLER 81 + ++ + ++T+VD L WAR SL + FG ACC +E R+D +R Sbjct: 17 NPIERPTTVTQELSENVILTTVDDLYNWARLSSLWPLLFGTACCFIEFAALIGSRFDFDR 76 Query: 82 FGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSY 140 FG PR+SPRQ+D++I AGT+T KM L R+Y+QMPEP+YVI+MG+C GG + S Sbjct: 77 FGLIPRSSPRQADLLITAGTITVKMGPQLVRLYEQMPEPKYVIAMGACTITGGMFSVDSP 136 Query: 141 SVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 S VRG D+++PVD+Y+PGCPP EA+I I+ L+KKI Sbjct: 137 SAVRGVDKLIPVDVYLPGCPPRPEAIIDAIIKLRKKI 173 >gi|218511715|sp|P26304|NDHK_WHEAT RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K Length = 225 Score = 221 bits (563), Expect = 4e-56, Method: Composition-based stats. Identities = 68/154 (44%), Positives = 103/154 (66%), Gaps = 1/154 (0%) Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87 + + + + T+ + L W+R SL + +G +CC +E R+D +R+G PR Sbjct: 7 PLLDQTSSNSVISTTPNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66 Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146 +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG Sbjct: 67 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126 Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 D+++PVD+Y+PGCPP EA+I + L+KKI R Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDALTKLRKKISRE 160 >gi|157164838|ref|YP_001466103.1| NADH dehydrogenase subunit B [Campylobacter concisus 13826] gi|238055276|sp|A7ZBE5|NUOB_CAMC1 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|112800518|gb|EAT97862.1| NADH-quinone oxidoreductase, b subunit [Campylobacter concisus 13826] Length = 170 Score = 221 bits (563), Expect = 4e-56, Method: Composition-based stats. Identities = 85/147 (57%), Positives = 112/147 (76%), Gaps = 1/147 (0%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 ++T+VD+LV W R+ SL +++GLACCA+EMM + RYD +RFG RASPR S+VMI Sbjct: 16 VVLTTVDKLVQWGRSNSLWALSYGLACCAIEMMASGASRYDFDRFGTIFRASPRHSEVMI 75 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 +AGTLT K A RR+YDQMPEP++VISMGSCAN GG ++ +YS V+G DRI+PVDIY+P Sbjct: 76 IAGTLTKKHAEFTRRLYDQMPEPKWVISMGSCANTGGMFN-TYSTVQGVDRIIPVDIYIP 134 Query: 158 GCPPTAEALIYGILLLQKKIRRVGNVK 184 GC P E L Y +++LQKKIR+ + Sbjct: 135 GCAPRPETLQYALMMLQKKIRKQSAFR 161 >gi|73748692|ref|YP_307931.1| proton-translocating NADH-quinone oxidoreductase, B subunit [Dehalococcoides sp. CBDB1] gi|289432718|ref|YP_003462591.1| NADH-quinone oxidoreductase subunit beta [Dehalococcoides sp. GT] gi|123619736|sp|Q3ZXS0|NUOB_DEHSC RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|73660408|emb|CAI83015.1| proton-translocating NADH-quinone oxidoreductase, B subunit [Dehalococcoides sp. CBDB1] gi|288946438|gb|ADC74135.1| NADH-quinone oxidoreductase, B subunit [Dehalococcoides sp. GT] Length = 200 Score = 221 bits (563), Expect = 4e-56, Method: Composition-based stats. Identities = 83/177 (46%), Positives = 116/177 (65%), Gaps = 1/177 (0%) Query: 9 KIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVE 68 +I + ++ E G +TSV++++ W+R SL + FGLACCA+E Sbjct: 23 GVIQSFRTGHTSPYPDPADWLNGEEPPPGVFITSVEKVLNWSRHYSLWPVMFGLACCAIE 82 Query: 69 MMQASMPRYDLERFGF-APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMG 127 MM + R+DL RFG RASPRQ+D+MIVAGTLT KMA L+R+YDQMPEP++V++MG Sbjct: 83 MMCMAASRWDLARFGMDIFRASPRQADLMIVAGTLTWKMAPWLKRIYDQMPEPKWVLAMG 142 Query: 128 SCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 +C GG + SYSVV G + +VPVD+YVPGCPP EAL+ I+ + +KI + +K Sbjct: 143 ACGTSGGLFRDSYSVVPGFNLVVPVDVYVPGCPPRPEALMRAIMDIHEKIDKTRILK 199 >gi|299137549|ref|ZP_07030730.1| NADH-quinone oxidoreductase, B subunit [Acidobacterium sp. MP5ACTX8] gi|298600190|gb|EFI56347.1| NADH-quinone oxidoreductase, B subunit [Acidobacterium sp. MP5ACTX8] Length = 205 Score = 221 bits (563), Expect = 4e-56, Method: Composition-based stats. Identities = 81/178 (45%), Positives = 116/178 (65%), Gaps = 2/178 (1%) Query: 2 GLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFG 61 + N + I G + D E +G ++ S+D + W R S+ MTFG Sbjct: 16 SVPQHNDRYIFGTLDSFGKNRDKVAEVSWGEEQPEGVVLASLDAAINWVRKNSVWPMTFG 75 Query: 62 LACCAVEMMQASMPRYDLERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 LACCA+EMM RYD+ RFG R SPRQSD+MI+AG ++ KMA +RR+Y+QMPEP Sbjct: 76 LACCAIEMMSMGGSRYDIARFGAEVFRPSPRQSDLMIIAGRVSQKMAPVIRRLYEQMPEP 135 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 ++VISMG+CA GG ++ Y++++G ++++PVD+YVPGCPP E L+Y I LLQ+KI+ Sbjct: 136 KWVISMGACATSGGVFNN-YALLQGVNQVIPVDVYVPGCPPRPEQLLYAITLLQEKIQ 192 >gi|326200285|gb|ADZ52324.1| NADH dehydrogenase 32 kDa subunit [Asclepias syriaca] Length = 227 Score = 221 bits (563), Expect = 4e-56, Method: Composition-based stats. Identities = 69/154 (44%), Positives = 103/154 (66%), Gaps = 1/154 (0%) Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87 + + + T+++ L W+R SL + +G +CC +E R+D +R+G PR Sbjct: 7 PLLNRTIQNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66 Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146 +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG Sbjct: 67 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126 Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 D+++PVD+Y+PGCPP EA+I I L+KKI R Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 160 >gi|269836326|ref|YP_003318554.1| NADH-quinone oxidoreductase, B subunit [Sphaerobacter thermophilus DSM 20745] gi|269785589|gb|ACZ37732.1| NADH-quinone oxidoreductase, B subunit [Sphaerobacter thermophilus DSM 20745] Length = 185 Score = 221 bits (563), Expect = 4e-56, Method: Composition-based stats. Identities = 86/156 (55%), Positives = 118/156 (75%), Gaps = 2/156 (1%) Query: 29 ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDL-ERFGFAPR 87 + + + L T+VD + WAR SL W+ FGLACCA+EM+ A+MPR+DL ERFG R Sbjct: 3 VIEDRFERNILTTTVDTVFNWARRSSLWWLQFGLACCAIEMISAAMPRFDLAERFGMLYR 62 Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCD 147 ASPRQ+D+MIVAGT+T KMA +R++YDQM +P++VISMGSCAN GG + +Y+VV+G D Sbjct: 63 ASPRQADLMIVAGTVTKKMAPVVRQLYDQMADPKWVISMGSCANVGGPF-DTYAVVQGVD 121 Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 +++PVD+YVPGCPP EAL YG+L LQ ++ + + Sbjct: 122 QVIPVDVYVPGCPPLPEALYYGVLELQNRVIKYDTI 157 >gi|332296570|ref|YP_004438493.1| NAD(P)H-quinone oxidoreductase subunit K [Thermodesulfobium narugense DSM 14796] gi|332179673|gb|AEE15362.1| NAD(P)H-quinone oxidoreductase subunit K [Thermodesulfobium narugense DSM 14796] Length = 178 Score = 221 bits (563), Expect = 4e-56, Method: Composition-based stats. Identities = 91/173 (52%), Positives = 123/173 (71%), Gaps = 5/173 (2%) Query: 15 SSCSLEKVDADFSRISSEITHKGFLVTSVDQ----LVTWARTGSLMWMTFGLACCAVEMM 70 S +++ + + + I +V+ +D+ +V W R SL MTFGLACCA+EMM Sbjct: 2 SENGVKEREIEIADGVKAIPAANAIVSPIDKAINWVVNWGRVSSLWPMTFGLACCAIEMM 61 Query: 71 QASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCA 130 P DL+RFG RASPRQ+D+MIVAGT+T KMA LRRVYDQMP+PRYVISMGSCA Sbjct: 62 AVGAPHNDLDRFGILFRASPRQADLMIVAGTVTLKMAPVLRRVYDQMPQPRYVISMGSCA 121 Query: 131 NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 N GG ++ +YSV++G D++VPVD+Y+PGCPP EAL++ +L LQ+KI++ V Sbjct: 122 NSGGIFN-TYSVLQGVDQVVPVDVYLPGCPPRPEALLHALLYLQQKIKKERMV 173 >gi|126165918|ref|YP_398867.2| NADH dehydrogenase subunit K [Nicotiana tomentosiformis] Length = 247 Score = 221 bits (563), Expect = 4e-56, Method: Composition-based stats. Identities = 69/160 (43%), Positives = 105/160 (65%), Gaps = 1/160 (0%) Query: 22 VDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLER 81 +++ + + T+++ L W+R SL + +G +CC +E R+D +R Sbjct: 23 MNSIQFPLLDRTAQNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDR 82 Query: 82 FGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSY 140 +G PR+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SY Sbjct: 83 YGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSY 142 Query: 141 SVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 S VRG D+++PVD+Y+PGCPP EA+I I L+KKI R Sbjct: 143 STVRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 182 >gi|299830273|ref|YP_003734437.1| NADH dehydrogenase subunit 10 [Paramecium caudatum] gi|299507832|emb|CAZ66816.1| NADH dehydrogenase subunit 10 [Paramecium caudatum] Length = 154 Score = 221 bits (563), Expect = 4e-56, Method: Composition-based stats. Identities = 97/147 (65%), Positives = 124/147 (84%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 FL TS + L++WAR GS +TFGLACCA+EMM A++ RYD +RFG RA+PRQSD++I Sbjct: 5 FLKTSANNLISWARQGSFWPLTFGLACCALEMMHATVSRYDFDRFGVIFRATPRQSDLII 64 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGT+TNKMA ALRR+YDQ +P++V+SMGSCANGGGYYHYSY+VV+GCD+I+PVDI+VP Sbjct: 65 VAGTVTNKMAPALRRLYDQTADPKWVLSMGSCANGGGYYHYSYAVVKGCDKIIPVDIFVP 124 Query: 158 GCPPTAEALIYGILLLQKKIRRVGNVK 184 GCPP+AEAL +G+L LQK + + N K Sbjct: 125 GCPPSAEALFFGVLQLQKTLMKTINEK 151 >gi|116617112|ref|YP_817486.1| NADH-plastoquinone oxidoreductase subunit K [Coffea arabica] gi|122153625|sp|A0A339|NDHK_COFAR RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K gi|116242168|gb|ABJ89683.1| NADH-plastoquinone oxidoreductase subunit K [Coffea arabica] Length = 229 Score = 220 bits (562), Expect = 5e-56, Method: Composition-based stats. Identities = 68/154 (44%), Positives = 101/154 (65%), Gaps = 1/154 (0%) Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87 + + T+++ W+R SL + +G +CC +E R+D +R+G PR Sbjct: 7 PLLDRTAQNSVISTTLNDFSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66 Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146 +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG Sbjct: 67 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126 Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 D+++PVD+Y+PGCPP EA+I I L+KKI R Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 160 >gi|164597808|ref|NP_084666.2| NADH dehydrogenase subunit K [Oenothera elata subsp. hookeri] gi|169142697|ref|YP_001687124.1| NADH dehydrogenase subunit K [Oenothera argillicola] gi|169142847|ref|YP_001687270.1| NADH dehydrogenase subunit K [Oenothera glazioviana] gi|169142932|ref|YP_001687354.1| NADH dehydrogenase subunit K [Oenothera biennis] gi|169143018|ref|YP_001687438.1| NADH dehydrogenase subunit K [Oenothera parviflora] gi|172045789|sp|Q9MTP4|NDHK_OENEH RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K gi|218527924|sp|B0Z4L3|NDHK_OENAR RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K gi|218527925|sp|B0Z4U7|NDHK_OENBI RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K gi|218527926|sp|B0Z531|NDHK_OENGL RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K gi|218527927|sp|B0Z5B5|NDHK_OENPA RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K gi|159792935|gb|ABW98691.1| NADH dehydrogenase subunit K [Oenothera argillicola] gi|159793105|gb|ABW98859.1| NADH dehydrogenase subunit K [Oenothera biennis] gi|159895459|gb|ABX10024.1| NADH dehydrogenase subunit K [Oenothera glazioviana] gi|159895544|gb|ABX10108.1| NADH dehydrogenase subunit K [Oenothera parviflora] gi|162423675|emb|CAB67131.2| NADH dehydrogenase subunit K [Oenothera elata subsp. hookeri] Length = 225 Score = 220 bits (562), Expect = 5e-56, Method: Composition-based stats. Identities = 70/148 (47%), Positives = 101/148 (68%), Gaps = 1/148 (0%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93 T + T+ + L W+R SL + +G +CC +E R+D +R+G PR+SPRQ+ Sbjct: 13 TQNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 72 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGCDRIVPV 152 D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++PV Sbjct: 73 DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 132 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRV 180 D+Y+PGCPP EA+I I L+KKI R Sbjct: 133 DVYLPGCPPKPEAIIDAITKLRKKISRE 160 >gi|126165911|ref|YP_358680.2| NADH dehydrogenase subunit K [Nicotiana sylvestris] gi|126165916|ref|NP_054503.2| NADH dehydrogenase subunit K [Nicotiana tabacum] Length = 247 Score = 220 bits (562), Expect = 5e-56, Method: Composition-based stats. Identities = 70/160 (43%), Positives = 106/160 (66%), Gaps = 1/160 (0%) Query: 22 VDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLER 81 +++ + T + T+++ L W+R SL + +G +CC +E R+D +R Sbjct: 23 MNSIQFPLLDRTTQNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDR 82 Query: 82 FGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSY 140 +G PR+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SY Sbjct: 83 YGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSY 142 Query: 141 SVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 S VRG D+++PVD+Y+PGCPP EA+I I L+KKI R Sbjct: 143 STVRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 182 >gi|307721750|ref|YP_003892890.1| NADH dehydrogenase subunit B [Sulfurimonas autotrophica DSM 16294] gi|306979843|gb|ADN09878.1| NADH dehydrogenase subunit B [Sulfurimonas autotrophica DSM 16294] Length = 169 Score = 220 bits (562), Expect = 5e-56, Method: Composition-based stats. Identities = 89/149 (59%), Positives = 115/149 (77%), Gaps = 3/149 (2%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 +TSVD++V W R+ SL +T+GLACC +EMM + RYD +RFG RASPRQ+DVMI Sbjct: 16 IALTSVDKIVNWGRSNSLWALTYGLACCGIEMMASGASRYDFDRFGTIFRASPRQADVMI 75 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGTLT K A ++R+YDQM EPR+VISMGSCAN GG ++ +Y+ V+GCDRI+PVD+Y+P Sbjct: 76 VAGTLTKKHAEFIKRLYDQMTEPRWVISMGSCANTGGMFN-TYATVQGCDRIIPVDLYLP 134 Query: 158 GCPPTAEALIYGILLLQKKIR--RVGNVK 184 GC P E L YG++LLQKKIR + GN + Sbjct: 135 GCAPRPETLQYGVMLLQKKIRANKAGNAQ 163 >gi|225872572|ref|YP_002754027.1| NADH dehydrogenase I, B subunit [Acidobacterium capsulatum ATCC 51196] gi|225792841|gb|ACO32931.1| NADH dehydrogenase I, B subunit [Acidobacterium capsulatum ATCC 51196] Length = 186 Score = 220 bits (562), Expect = 5e-56, Method: Composition-based stats. Identities = 75/149 (50%), Positives = 107/149 (71%), Gaps = 2/149 (1%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQ 92 +G +T++D + W R S+ MTFGLACCA+EMM R+D+ RFG R SPRQ Sbjct: 29 QPEGVFLTTLDSAINWVRKSSIWPMTFGLACCAIEMMSMGASRFDVARFGAEVFRPSPRQ 88 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 +D+M++AG ++ KMA +RR+YDQMPEP++VISMG+CA GG ++ Y++++G ++++PV Sbjct: 89 ADLMVIAGRVSQKMAPVIRRLYDQMPEPKWVISMGACATSGGVFNN-YALLQGVNQVIPV 147 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVG 181 DIYVPGCPP E LIY LLQ+KI+ Sbjct: 148 DIYVPGCPPRPEQLIYAFTLLQEKIQNER 176 >gi|254456709|ref|ZP_05070137.1| NADH dehydrogenase i chain b [Campylobacterales bacterium GD 1] gi|207085501|gb|EDZ62785.1| NADH dehydrogenase i chain b [Campylobacterales bacterium GD 1] Length = 169 Score = 220 bits (562), Expect = 5e-56, Method: Composition-based stats. Identities = 84/141 (59%), Positives = 110/141 (78%), Gaps = 1/141 (0%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 +TS+D++V W R+ SL +T+GLACC +EMM + RYD +RFG RASPRQ+DVMI Sbjct: 16 VALTSIDKIVNWGRSNSLWALTYGLACCGIEMMASGASRYDFDRFGTIFRASPRQADVMI 75 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGTLT K A ++R+YDQM EPR+VISMGSCAN GG ++ +Y+ V+G DRI+PVD+Y+P Sbjct: 76 VAGTLTKKHAEFIKRLYDQMTEPRWVISMGSCANTGGMFN-TYATVQGVDRIIPVDLYLP 134 Query: 158 GCPPTAEALIYGILLLQKKIR 178 GC P E L YG++LLQ+KIR Sbjct: 135 GCAPRPETLQYGVMLLQQKIR 155 >gi|902226|emb|CAA60290.1| ndhK [Zea mays] Length = 248 Score = 220 bits (562), Expect = 5e-56, Method: Composition-based stats. Identities = 68/154 (44%), Positives = 103/154 (66%), Gaps = 1/154 (0%) Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87 + + + + T+ + L W+R SL + +G +CC +E R+D +R+G PR Sbjct: 28 PLLDQTSSNSVISTTPNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 87 Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146 +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG Sbjct: 88 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 147 Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 D+++PVD+Y+PGCPP EA+I + L+KKI R Sbjct: 148 DKLIPVDVYLPGCPPKPEAVIDALTKLRKKIARE 181 >gi|12427|emb|CAA35482.1| unnamed protein product [Zea mays] gi|552735|gb|AAA84484.1| PSII-G [Zea mays] gi|48478677|gb|AAT44697.1| NADH dehydrogenase subunit K [Saccharum hybrid cultivar SP80-3280] gi|49659516|dbj|BAD27297.1| NADH dehydrogenase 27kD subunit [Saccharum hybrid cultivar NCo 310] gi|118201130|gb|ABK79500.1| NADH-plastoquinone oxidoreductase subunit K [Sorghum bicolor] Length = 248 Score = 220 bits (562), Expect = 5e-56, Method: Composition-based stats. Identities = 68/154 (44%), Positives = 103/154 (66%), Gaps = 1/154 (0%) Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87 + + + + T+ + L W+R SL + +G +CC +E R+D +R+G PR Sbjct: 28 PLLDQTSSNSVISTTPNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 87 Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146 +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG Sbjct: 88 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 147 Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 D+++PVD+Y+PGCPP EA+I + L+KKI R Sbjct: 148 DKLIPVDVYLPGCPPKPEAVIDALTKLRKKIARE 181 >gi|313199706|ref|YP_004021320.1| NADH-plastoquinone oxidoreductase subunit K [Theobroma cacao] gi|309321270|gb|ADO64813.1| NADH-plastoquinone oxidoreductase subunit K [Theobroma cacao] gi|328924787|gb|ADO64894.2| NADH-plastoquinone oxidoreductase subunit K [Theobroma cacao] Length = 225 Score = 220 bits (562), Expect = 5e-56, Method: Composition-based stats. Identities = 70/154 (45%), Positives = 103/154 (66%), Gaps = 1/154 (0%) Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87 + T + T+++ L W+R SL + +G +CC +E R+D +R+G PR Sbjct: 7 PLLDRTTQNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66 Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146 +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG Sbjct: 67 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126 Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 D+++PVD+Y+PGCPP EA+I I L+KKI R Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 160 >gi|237751580|ref|ZP_04582060.1| NADH dehydrogenase subunit I B [Helicobacter bilis ATCC 43879] gi|229372946|gb|EEO23337.1| NADH dehydrogenase subunit I B [Helicobacter bilis ATCC 43879] Length = 169 Score = 220 bits (562), Expect = 5e-56, Method: Composition-based stats. Identities = 85/156 (54%), Positives = 115/156 (73%), Gaps = 3/156 (1%) Query: 31 SEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88 E++ +G + SVD+++ W R+ SL +T+GLACCA+EMM R+D +RFG RA Sbjct: 7 GELSPRGMPVALGSVDKILNWGRSNSLWPLTYGLACCAIEMMATGGSRFDFDRFGIIFRA 66 Query: 89 SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 148 SPRQSDVMI+AGTLT K A RR+YDQMPEP++V+SMGSCAN GG ++ +Y+ V+G DR Sbjct: 67 SPRQSDVMIIAGTLTKKHAEFTRRLYDQMPEPKWVVSMGSCANTGGMFN-TYATVQGVDR 125 Query: 149 IVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 I+PVDIY+PGC P E L Y +++LQ+KIR +K Sbjct: 126 IIPVDIYLPGCAPRPETLQYAMMVLQQKIRSEKAIK 161 >gi|154795217|ref|NP_054940.3| NADH dehydrogenase subunit K [Spinacia oleracea] gi|218512134|sp|Q9M3M0|NDHK_SPIOL RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K Length = 227 Score = 220 bits (562), Expect = 5e-56, Method: Composition-based stats. Identities = 71/154 (46%), Positives = 103/154 (66%), Gaps = 1/154 (0%) Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87 + +I + T+ + L W+R SL + +G +CC +E R+D +R+G PR Sbjct: 7 PLLDQIAQNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66 Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146 ASPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG Sbjct: 67 ASPRQADLILTAGTVTMKMAPSLLRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126 Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 D+++PVD+Y+PGCPP EA+I I L+KKI R Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 160 >gi|91208905|ref|YP_538939.1| NADH dehydrogenase subunit K [Gossypium hirsutum] gi|119368503|ref|YP_913191.1| NADH dehydrogenase 27kD subunit [Gossypium barbadense] gi|325210934|ref|YP_004286008.1| NADH-plastoquinone oxidoreductase subunit K [Gossypium thurberi] gi|122201392|sp|Q2L909|NDHK_GOSHI RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K gi|218527889|sp|A0ZZ39|NDHK_GOSBA RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K gi|85687419|gb|ABC73631.1| NADH-plastoquinone oxidoreductase subunit K [Gossypium hirsutum] gi|119224865|dbj|BAF41251.1| NADH dehydrogenase 27kD subunit [Gossypium barbadense] gi|290775796|gb|ADD62292.1| NADH-plastoquinone oxidoreductase subunit K [Gossypium thurberi] Length = 225 Score = 220 bits (562), Expect = 5e-56, Method: Composition-based stats. Identities = 70/154 (45%), Positives = 103/154 (66%), Gaps = 1/154 (0%) Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87 + T + T+++ L W+R SL + +G +CC +E R+D +R+G PR Sbjct: 7 PLLDRTTQNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66 Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146 +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG Sbjct: 67 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126 Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 D+++PVD+Y+PGCPP EA+I I L+KKI R Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 160 >gi|320161226|ref|YP_004174450.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit family protein [Anaerolinea thermophila UNI-1] gi|319995079|dbj|BAJ63850.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit family protein [Anaerolinea thermophila UNI-1] Length = 217 Score = 220 bits (562), Expect = 6e-56, Method: Composition-based stats. Identities = 79/164 (48%), Positives = 117/164 (71%), Gaps = 2/164 (1%) Query: 18 SLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRY 77 E++ + I E+ ++ VT++D++ W+R SL M FGLACCA+EM+ + R+ Sbjct: 2 PNEELHSPGYEIPPEMQNQ-VTVTTLDRIYNWSRKNSLWPMMFGLACCAIEMIATAASRF 60 Query: 78 DLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY 136 D RFG R SPRQ+DVMIV+GT+T KM + R+Y+QMPEP+YV++MG+CA+GGG + Sbjct: 61 DFSRFGMEVMRPSPRQADVMIVSGTVTKKMVPQIVRLYNQMPEPKYVVAMGACASGGGPF 120 Query: 137 HYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 Y+VV G D+ +PVD+Y+PGCPPT +AL+ G+++LQKK+ R Sbjct: 121 KEGYNVVSGIDKFIPVDVYIPGCPPTPQALLNGLIMLQKKVERE 164 >gi|78211756|ref|YP_380535.1| NADH dehydrogenase subunit B [Synechococcus sp. CC9605] gi|123578940|sp|Q3AN52|NDHK_SYNSC RecName: Full=NAD(P)H-quinone oxidoreductase subunit K; AltName: Full=NAD(P)H dehydrogenase I subunit K; AltName: Full=NDH-1 subunit K; Short=NDH-K gi|78196215|gb|ABB33980.1| NADH-quinone oxidoreductase, B subunit [Synechococcus sp. CC9605] Length = 246 Score = 220 bits (562), Expect = 6e-56, Method: Composition-based stats. Identities = 71/152 (46%), Positives = 104/152 (68%), Gaps = 1/152 (0%) Query: 27 SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP 86 + + + ++TS+D L WAR SL + +G ACC +E R+D +RFG P Sbjct: 25 APTVTNDLSENVILTSLDDLHNWARLSSLWPLLYGTACCFIEFAALLGSRFDFDRFGLVP 84 Query: 87 RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRG 145 R+SPRQ+D++IVAGT+T KMA AL R+Y+QMPEP+YVI+MG+C GG + S + VRG Sbjct: 85 RSSPRQADLLIVAGTVTMKMAPALVRLYEQMPEPKYVIAMGACTITGGMFSADSTTAVRG 144 Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 D+++PVD+Y+PGCPP EA+ ++ L+KK+ Sbjct: 145 VDKLIPVDLYLPGCPPRPEAIFDAVIKLRKKV 176 >gi|197359653|gb|ACH69868.1| NADH-plastoquinone oxidoreductase subunit K [Aneura sp. Shaw 702] Length = 232 Score = 220 bits (562), Expect = 6e-56, Method: Composition-based stats. Identities = 70/152 (46%), Positives = 104/152 (68%), Gaps = 1/152 (0%) Query: 30 SSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS 89 S + ++T+++ WAR SL + +G +CC +E R+D +R+G PR+S Sbjct: 9 SDKTVTDSIILTTLNDFSNWARLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSS 68 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGCDR 148 PRQ+D++I AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SY+ VRG D+ Sbjct: 69 PRQADLVITAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYTTVRGVDK 128 Query: 149 IVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 ++PVDIY+PGCPP EA+I I+ L+K+I R Sbjct: 129 LIPVDIYLPGCPPRPEAVIDAIIKLRKRIARE 160 >gi|139390352|ref|YP_001122950.1| photosystem II G protein [Aethionema cordifolium] gi|218527879|sp|A4QJB9|NDHK_AETCO RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K gi|134286145|dbj|BAF49774.1| photosystem II G protein [Aethionema cordifolium] Length = 229 Score = 220 bits (562), Expect = 6e-56, Method: Composition-based stats. Identities = 70/154 (45%), Positives = 103/154 (66%), Gaps = 1/154 (0%) Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87 + T + T+++ L W+R SL + +G +CC +E R+D +R+G PR Sbjct: 7 PVLDRTTKNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66 Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146 +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG Sbjct: 67 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126 Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 D+++PVD+Y+PGCPP EA+I I L+KKI R Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKIARE 160 >gi|290489704|gb|ADD31236.1| NADH-plastoquinone oxidoreductase subunit K protein [Antirrhinum majus] Length = 254 Score = 220 bits (561), Expect = 6e-56, Method: Composition-based stats. Identities = 69/154 (44%), Positives = 102/154 (66%), Gaps = 1/154 (0%) Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87 + + T+++ L W+R SL + +G +CC +E R+D +R+G PR Sbjct: 36 PLLDRTAENSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 95 Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146 +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG Sbjct: 96 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 155 Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 D+++PVD+Y+PGCPP EA+I I L+KKI R Sbjct: 156 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 189 >gi|154795229|ref|YP_001023705.2| NADH dehydrogenase subunit K [Angiopteris evecta] Length = 232 Score = 220 bits (561), Expect = 6e-56, Method: Composition-based stats. Identities = 68/151 (45%), Positives = 102/151 (67%), Gaps = 1/151 (0%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP 90 + + T+++ WAR SL + +G +CC +E R+D +R+G PR+SP Sbjct: 10 DKNMSNSIISTNLNDFSNWARLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSP 69 Query: 91 RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGCDRI 149 RQ+D++I AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D++ Sbjct: 70 RQADLIITAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGIDKL 129 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 +PVD+Y+PGCPP EA+I I+ L+KK+ + Sbjct: 130 IPVDVYLPGCPPKPEAIIDAIIKLRKKVAQE 160 >gi|218176248|ref|YP_002364505.1| NADH-plastoquinone oxidoreductase subunit K [Festuca arundinacea] gi|215882332|gb|ACJ70762.1| NADH-plastoquinone oxidoreductase subunit K [Festuca arundinacea] Length = 246 Score = 220 bits (561), Expect = 6e-56, Method: Composition-based stats. Identities = 68/154 (44%), Positives = 103/154 (66%), Gaps = 1/154 (0%) Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87 + + + + T+ + L W+R SL + +G +CC +E R+D +R+G PR Sbjct: 28 PLLDQNSSNSVISTTPNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 87 Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146 +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG Sbjct: 88 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 147 Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 D+++PVD+Y+PGCPP EA+I + L+KKI R Sbjct: 148 DKLIPVDVYLPGCPPKPEAVIDALTKLRKKISRE 181 >gi|194033153|ref|YP_002000491.1| NADH dehydrogenase subunit K [Brachypodium distachyon] gi|193075561|gb|ACF08644.1| NADH dehydrogenase 27kDa subunit [Brachypodium distachyon] Length = 245 Score = 220 bits (561), Expect = 6e-56, Method: Composition-based stats. Identities = 68/154 (44%), Positives = 103/154 (66%), Gaps = 1/154 (0%) Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87 + + + + T+ + L W+R SL + +G +CC +E R+D +R+G PR Sbjct: 27 PLLDQTSSNSVISTTPNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 86 Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146 +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG Sbjct: 87 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 146 Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 D+++PVD+Y+PGCPP EA+I + L+KKI R Sbjct: 147 DKLIPVDVYLPGCPPKPEAVIDALTKLRKKISRE 180 >gi|154795219|ref|YP_740121.2| NADH-plastoquinone oxidoreductase subunit K [Daucus carota] gi|218527898|sp|Q0G9V8|NDHK_DAUCA RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K Length = 225 Score = 220 bits (561), Expect = 6e-56, Method: Composition-based stats. Identities = 70/154 (45%), Positives = 102/154 (66%), Gaps = 1/154 (0%) Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87 + T + T+ + L W+R SL + +G +CC +E R+D +R+G PR Sbjct: 7 PLLDRTTQNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66 Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146 +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG Sbjct: 67 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTISGGMFSTDSYSTVRGV 126 Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 D+++PVD+Y+PGCPP EA+I I L+KKI R Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 160 >gi|80750929|dbj|BAE48005.1| NADH dehydrogenase 27kD subunit [Nicotiana tomentosiformis] Length = 284 Score = 220 bits (561), Expect = 6e-56, Method: Composition-based stats. Identities = 69/160 (43%), Positives = 105/160 (65%), Gaps = 1/160 (0%) Query: 22 VDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLER 81 +++ + + T+++ L W+R SL + +G +CC +E R+D +R Sbjct: 60 MNSIQFPLLDRTAQNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDR 119 Query: 82 FGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSY 140 +G PR+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SY Sbjct: 120 YGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSY 179 Query: 141 SVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 S VRG D+++PVD+Y+PGCPP EA+I I L+KKI R Sbjct: 180 STVRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 219 >gi|322435876|ref|YP_004218088.1| NADH-quinone oxidoreductase, B subunit [Acidobacterium sp. MP5ACTX9] gi|321163603|gb|ADW69308.1| NADH-quinone oxidoreductase, B subunit [Acidobacterium sp. MP5ACTX9] Length = 205 Score = 220 bits (561), Expect = 6e-56, Method: Composition-based stats. Identities = 80/153 (52%), Positives = 111/153 (72%), Gaps = 3/153 (1%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQ 92 +G ++ S+D + W R S+ MTFGLACCA+EMM RYD+ RFG R SPRQ Sbjct: 48 QPEGIVLASLDAAINWVRKNSVWPMTFGLACCAIEMMSMGGSRYDIARFGAEVFRPSPRQ 107 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 SD+MI+AG ++ KMA +RR+Y+QMPEP++VISMG+CA GG ++ Y++++G ++I+PV Sbjct: 108 SDLMIIAGRVSQKMAPVIRRLYEQMPEPKWVISMGACATSGGVFNN-YALLQGVNQIIPV 166 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIR-RVGNVK 184 DIYVPGCPP E L+Y I LLQ+KI+ G V+ Sbjct: 167 DIYVPGCPPRPEQLLYAITLLQEKIQSERGTVR 199 >gi|260076082|gb|ACX30960.1| NADH dehydrogenase subunit 10 [Euplotes minuta] Length = 167 Score = 220 bits (561), Expect = 6e-56, Method: Composition-based stats. Identities = 96/140 (68%), Positives = 122/140 (87%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 +LVT + +V W+R+GS+ +TFGLACCAVEMM ++M RYDL+RFG RASPR SD++I Sbjct: 9 WLVTKLQTMVNWSRSGSIWPLTFGLACCAVEMMHSAMSRYDLDRFGMIFRASPRHSDLII 68 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 +AGTLTNKMA LRR+++QM EP++++SMGSCANGGGYYHYSY+VVRG +RIVPVD+YVP Sbjct: 69 IAGTLTNKMAPTLRRLFEQMQEPKFILSMGSCANGGGYYHYSYAVVRGAERIVPVDMYVP 128 Query: 158 GCPPTAEALIYGILLLQKKI 177 GCPPTAEALI+G+L LQ K+ Sbjct: 129 GCPPTAEALIFGLLQLQGKV 148 >gi|218527902|sp|Q8S8X1|NDHK_ATRBE RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K Length = 225 Score = 220 bits (561), Expect = 6e-56, Method: Composition-based stats. Identities = 69/160 (43%), Positives = 105/160 (65%), Gaps = 1/160 (0%) Query: 22 VDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLER 81 +++ + + T+++ L W+R SL + +G +CC +E R+D +R Sbjct: 1 MNSIQFPLLDRTAQNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDR 60 Query: 82 FGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSY 140 +G PR+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SY Sbjct: 61 YGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSY 120 Query: 141 SVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 S VRG D+++PVD+Y+PGCPP EA+I I L+KKI R Sbjct: 121 STVRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 160 >gi|78778022|ref|YP_394337.1| NADH dehydrogenase subunit B [Sulfurimonas denitrificans DSM 1251] gi|123549715|sp|Q30PH9|NUOB_SULDN RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|78498562|gb|ABB45102.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit [Sulfurimonas denitrificans DSM 1251] Length = 169 Score = 220 bits (561), Expect = 6e-56, Method: Composition-based stats. Identities = 86/147 (58%), Positives = 111/147 (75%), Gaps = 1/147 (0%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 +TS+D++V W R+ SL MT+GLACC +EMM + RYD +RFG RASPRQSDVMI Sbjct: 16 VALTSIDKIVNWGRSNSLWAMTYGLACCGIEMMASGASRYDFDRFGTIFRASPRQSDVMI 75 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGTLT K A ++R+YDQM EP++VISMGSCAN GG ++ +Y+ V+G DRI+PVD+Y+P Sbjct: 76 VAGTLTKKHAEFIKRLYDQMTEPKWVISMGSCANTGGMFN-TYATVQGVDRIIPVDLYLP 134 Query: 158 GCPPTAEALIYGILLLQKKIRRVGNVK 184 GC P E L YG++LLQKKIR + Sbjct: 135 GCAPRPETLQYGVMLLQKKIRANKASR 161 >gi|218527903|sp|B3TN55|NDHK_BRADI RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K Length = 225 Score = 220 bits (561), Expect = 6e-56, Method: Composition-based stats. Identities = 68/154 (44%), Positives = 103/154 (66%), Gaps = 1/154 (0%) Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87 + + + + T+ + L W+R SL + +G +CC +E R+D +R+G PR Sbjct: 7 PLLDQTSSNSVISTTPNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66 Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146 +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG Sbjct: 67 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126 Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 D+++PVD+Y+PGCPP EA+I + L+KKI R Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDALTKLRKKISRE 160 >gi|52220814|ref|YP_086970.1| NADH dehydrogenase subunit K [Panax ginseng] gi|75254105|sp|Q68S02|NDHK_PANGI RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K gi|51235317|gb|AAT98513.1| NADH dehydrogenase 32 kDa subunit [Panax ginseng] Length = 225 Score = 220 bits (561), Expect = 6e-56, Method: Composition-based stats. Identities = 70/154 (45%), Positives = 102/154 (66%), Gaps = 1/154 (0%) Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87 + T + T+ + L W+R SL + +G +CC +E R+D +R+G PR Sbjct: 7 PLLDRTTQNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66 Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146 +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG Sbjct: 67 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTISGGMFSTDSYSTVRGV 126 Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 D+++PVD+Y+PGCPP EA+I I L+KKI R Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 160 >gi|139389646|ref|YP_001123203.1| photosystem II G protein [Arabis hirsuta] gi|218527883|sp|A4QK22|NDHK_ARAHI RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K gi|134286401|dbj|BAF50027.1| photosystem II G protein [Arabis hirsuta] Length = 225 Score = 220 bits (561), Expect = 6e-56, Method: Composition-based stats. Identities = 70/154 (45%), Positives = 103/154 (66%), Gaps = 1/154 (0%) Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87 + T + T+++ L W+R SL + +G +CC +E R+D +R+G PR Sbjct: 7 PVLDRTTKNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66 Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146 +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG Sbjct: 67 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126 Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 D+++PVD+Y+PGCPP EA+I I L+KKI R Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKIARE 160 >gi|194336921|ref|YP_002018715.1| NADH-quinone oxidoreductase, B subunit [Pelodictyon phaeoclathratiforme BU-1] gi|238065188|sp|B4SBZ2|NUOB_PELPB RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|194309398|gb|ACF44098.1| NADH-quinone oxidoreductase, B subunit [Pelodictyon phaeoclathratiforme BU-1] Length = 189 Score = 220 bits (561), Expect = 7e-56, Method: Composition-based stats. Identities = 88/147 (59%), Positives = 112/147 (76%), Gaps = 1/147 (0%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 IT L+TSVD ++ WAR SL M FGLACCA+EMM + YDLERFG PR+SPRQ Sbjct: 8 ITQHNVLITSVDNVLNWARLSSLWPMGFGLACCAIEMMATNASNYDLERFGIFPRSSPRQ 67 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVP 151 SD+MIVAGT+T KMA + R+Y+QMPEPRYV+SMGSC+N GG Y Y V++G DR++P Sbjct: 68 SDLMIVAGTVTMKMAERVIRLYEQMPEPRYVLSMGSCSNCGGPYWEHGYHVLKGVDRVIP 127 Query: 152 VDIYVPGCPPTAEALIYGILLLQKKIR 178 VD++VPGCPP E+LI G++ +Q+ IR Sbjct: 128 VDVFVPGCPPRPESLIGGLMKVQELIR 154 >gi|156598395|gb|ABU85457.1| NADH-plastoquinone oxidoreductase subunit K [Musa acuminata] Length = 284 Score = 220 bits (561), Expect = 7e-56, Method: Composition-based stats. Identities = 69/154 (44%), Positives = 103/154 (66%), Gaps = 1/154 (0%) Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87 + + + T+++ L W+R SL + +G +CC +E R+D +R+G PR Sbjct: 66 PLVDKTITNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 125 Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146 +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG Sbjct: 126 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 185 Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 D+++PVD+Y+PGCPP EA+I I L+KKI R Sbjct: 186 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 219 >gi|15606518|ref|NP_213898.1| NADH dehydrogenase I chain B [Aquifex aeolicus VF5] gi|6647653|sp|O67334|NUOB_AQUAE RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|2983736|gb|AAC07297.1| NADH dehydrogenase I chain B [Aquifex aeolicus VF5] Length = 179 Score = 220 bits (561), Expect = 7e-56, Method: Composition-based stats. Identities = 83/152 (54%), Positives = 114/152 (75%), Gaps = 1/152 (0%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 I GF+ T+V++L+ W R SL +T GLACCA+EMM + R+DL+R G RASPRQ Sbjct: 4 INSNGFVTTTVEELLRWGRRNSLWPVTIGLACCAIEMMHTAASRFDLDRLGVIFRASPRQ 63 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 +DV+IVAGT+ NK+A L+ ++DQMP+P++ ISMG CA+ GG + +YS ++G DRI+PV Sbjct: 64 ADVLIVAGTVVNKVAPMLKLIWDQMPDPKWCISMGGCASAGGPFP-TYSTLQGVDRIIPV 122 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 D+Y+PGCPPT + LIYGIL LQ+KI+ G K Sbjct: 123 DVYIPGCPPTPQGLIYGILQLQRKIKEQGITK 154 >gi|224437358|ref|ZP_03658330.1| NADH dehydrogenase subunit B [Helicobacter cinaedi CCUG 18818] gi|313143821|ref|ZP_07806014.1| NADH dehydrogenase subunit B [Helicobacter cinaedi CCUG 18818] gi|313128852|gb|EFR46469.1| NADH dehydrogenase subunit B [Helicobacter cinaedi CCUG 18818] Length = 169 Score = 220 bits (561), Expect = 7e-56, Method: Composition-based stats. Identities = 82/146 (56%), Positives = 113/146 (77%), Gaps = 1/146 (0%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 ++SVD+L+ W R+ SL +T+GLACCA+EMM R+DL+RFG RASPRQ+D+MI Sbjct: 16 IALSSVDKLLNWGRSNSLWGLTYGLACCAIEMMATGGSRFDLDRFGTIFRASPRQADLMI 75 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 ++GT+T K A +RR+YDQMPEP++VISMGSCAN GG ++ +YS V+G DRI+PVDIY+P Sbjct: 76 ISGTVTKKHAEFVRRLYDQMPEPKWVISMGSCANTGGMFN-TYSTVQGVDRIIPVDIYLP 134 Query: 158 GCPPTAEALIYGILLLQKKIRRVGNV 183 GC P E L Y +++LQ+KIR+ + Sbjct: 135 GCAPRPETLQYAVMVLQQKIRKQKAI 160 >gi|11837|emb|CAA77357.1| NADH dehydrogenase 27kD subunit [Nicotiana tabacum] gi|77799566|dbj|BAE46655.1| NADH dehydrogenase 27kD subunit [Nicotiana sylvestris] gi|225205|prf||1211235AK bhpB gene Length = 284 Score = 220 bits (561), Expect = 7e-56, Method: Composition-based stats. Identities = 70/160 (43%), Positives = 106/160 (66%), Gaps = 1/160 (0%) Query: 22 VDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLER 81 +++ + T + T+++ L W+R SL + +G +CC +E R+D +R Sbjct: 60 MNSIQFPLLDRTTQNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDR 119 Query: 82 FGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSY 140 +G PR+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SY Sbjct: 120 YGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSY 179 Query: 141 SVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 S VRG D+++PVD+Y+PGCPP EA+I I L+KKI R Sbjct: 180 STVRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 219 >gi|139389100|ref|YP_001123818.1| NADH dehydrogenase subunit K [Nasturtium officinale] gi|218527914|sp|A4QLT7|NDHK_NASOF RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K gi|134287023|dbj|BAF50642.1| photosystem II G protein [Nasturtium officinale] Length = 225 Score = 220 bits (561), Expect = 7e-56, Method: Composition-based stats. Identities = 70/154 (45%), Positives = 103/154 (66%), Gaps = 1/154 (0%) Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87 + T + T+++ L W+R SL + +G +CC +E R+D +R+G PR Sbjct: 7 PVLDRTTKNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66 Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146 +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG Sbjct: 67 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126 Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 D+++PVD+Y+PGCPP EA+I I L+KKI R Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKIARE 160 >gi|1019632|gb|AAA79257.1| photosystem II protein G [Paramecium aurelia] Length = 156 Score = 220 bits (561), Expect = 7e-56, Method: Composition-based stats. Identities = 97/152 (63%), Positives = 124/152 (81%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 I FL S + L++WAR GS +TFGLACCA+EMM A++ RYD +RFG RA+PRQ Sbjct: 2 ILKADFLKLSANNLISWARQGSFWPLTFGLACCALEMMHATVSRYDFDRFGVIFRATPRQ 61 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 +D++IVAGT+TNKMA ALRR+YDQ +P++V+SMGSCANGGGYYHYSY+VV+GCD+I+PV Sbjct: 62 ADLIIVAGTVTNKMAPALRRLYDQTADPKWVLSMGSCANGGGYYHYSYAVVKGCDKIIPV 121 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 DI+VPGCPPTAEAL +G+L LQK + + N K Sbjct: 122 DIFVPGCPPTAEALFFGVLQLQKTLMKTINEK 153 >gi|139390156|ref|YP_001123729.1| NADH dehydrogenase subunit K [Lobularia maritima] gi|218527911|sp|A4QLJ8|NDHK_LOBMA RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K gi|134286933|dbj|BAF50553.1| photosystem II G protein [Lobularia maritima] Length = 225 Score = 220 bits (561), Expect = 7e-56, Method: Composition-based stats. Identities = 70/154 (45%), Positives = 103/154 (66%), Gaps = 1/154 (0%) Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87 + T + T+++ L W+R SL + +G +CC +E R+D +R+G PR Sbjct: 7 PVLDRTTKNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66 Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146 +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG Sbjct: 67 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126 Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 D+++PVD+Y+PGCPP EA+I I L+KKI R Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKIARE 160 >gi|33864744|ref|NP_896303.1| NADH dehydrogenase subunit B [Synechococcus sp. WH 8102] gi|81575356|sp|Q7U9P5|NDHK_SYNPX RecName: Full=NAD(P)H-quinone oxidoreductase subunit K; AltName: Full=NAD(P)H dehydrogenase I subunit K; AltName: Full=NDH-1 subunit K; Short=NDH-K gi|33632267|emb|CAE06723.1| NADH dehydrogenase I chain B or NdhK [Synechococcus sp. WH 8102] Length = 246 Score = 220 bits (561), Expect = 7e-56, Method: Composition-based stats. Identities = 71/145 (48%), Positives = 102/145 (70%), Gaps = 1/145 (0%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93 + ++TS+D L WAR SL + +G ACC +E R+D +RFG PR+SPRQ+ Sbjct: 32 LSENVILTSLDDLHNWARLSSLWPLLYGTACCFIEFAALLGSRFDFDRFGLVPRSSPRQA 91 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGCDRIVPV 152 D++IVAGT+T KMA AL R+Y+QMPEP+YVI+MG+C GG + S + VRG D+++PV Sbjct: 92 DLLIVAGTVTMKMAPALVRLYEQMPEPKYVIAMGACTITGGMFSADSTTAVRGVDKLIPV 151 Query: 153 DIYVPGCPPTAEALIYGILLLQKKI 177 D+Y+PGCPP EA+ ++ L+KK+ Sbjct: 152 DLYMPGCPPRPEAIFDAVIKLRKKV 176 >gi|154795230|ref|YP_567080.2| NADH dehydrogenase subunit K [Vitis vinifera] gi|218527949|sp|Q0ZJ16|NDHK_VITVI RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K Length = 225 Score = 220 bits (561), Expect = 7e-56, Method: Composition-based stats. Identities = 70/154 (45%), Positives = 102/154 (66%), Gaps = 1/154 (0%) Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87 + T + T+ + L W+R SL + +G +CC +E R+D +R+G PR Sbjct: 7 PLLDRTTQNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66 Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146 +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG Sbjct: 67 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126 Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 D+++PVD+Y+PGCPP EA+I I L+KKI R Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 160 >gi|39998533|ref|NP_954484.1| trifunctional NADH dehydrogenase I subunit B/C/D [Geobacter sulfurreducens PCA] gi|81700831|sp|Q746S4|NUBCD_GEOSL RecName: Full=NADH-quinone oxidoreductase subunit B/C/D; AltName: Full=NADH dehydrogenase I subunit B/C/D; AltName: Full=NDH-1 subunit B/C/D gi|39985480|gb|AAR36834.1| NADH dehydrogenase I, B/C/D subunits [Geobacter sulfurreducens PCA] gi|298507477|gb|ADI86200.1| NADH dehydrogenase I, B/C/D subunits [Geobacter sulfurreducens KN400] Length = 792 Score = 220 bits (561), Expect = 7e-56, Method: Composition-based stats. Identities = 78/153 (50%), Positives = 110/153 (71%), Gaps = 2/153 (1%) Query: 30 SSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RA 88 +E+ ++ S+D L+ W R SL M FGL+CC VEMM + RYD+ RFG R Sbjct: 3 ETEVPQNNIILASLDDLINWGRANSLWPMFFGLSCCFVEMMTSFTSRYDVSRFGAEVLRG 62 Query: 89 SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 148 +PR++D+M++AGT+ KMA ++ R+Y+QM EP++VISMGSCAN GG Y YSVV+G ++ Sbjct: 63 TPREADLMVIAGTVFKKMAPSILRLYEQMAEPKWVISMGSCANSGGMY-DVYSVVQGVNQ 121 Query: 149 IVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181 I+PVD++VPGCPP EA + G++LLQ+KIRR Sbjct: 122 IIPVDVHVPGCPPRPEAFLQGLMLLQEKIRREE 154 >gi|262400780|gb|ACY66269.1| NADH dehydrogenase subunit K [Brassica napus] Length = 225 Score = 220 bits (561), Expect = 7e-56, Method: Composition-based stats. Identities = 70/154 (45%), Positives = 103/154 (66%), Gaps = 1/154 (0%) Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87 + T + T+++ L W+R SL + +G +CC +E R+D +R+G PR Sbjct: 7 PVLDRTTKNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66 Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146 +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG Sbjct: 67 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126 Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 D+++PVD+Y+PGCPP EA+I I L+KKI R Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKIARE 160 >gi|154795561|ref|NP_038400.2| NADH dehydrogenase subunit K [Mesostigma viride] Length = 223 Score = 220 bits (561), Expect = 7e-56, Method: Composition-based stats. Identities = 70/159 (44%), Positives = 111/159 (69%), Gaps = 2/159 (1%) Query: 27 SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP 86 +++ ++++ ++T+++ L WAR SL + +G +CC +E R+D +RFG P Sbjct: 4 PQVTQNVSNQ-LILTTLNDLYNWARLSSLWPLLYGTSCCFIEFACLLGSRFDFDRFGLVP 62 Query: 87 RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRG 145 R SPRQ+D++I AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG Sbjct: 63 RCSPRQADLIITAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRG 122 Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 D+++PVD+Y+PGCPP EA+I ++ L+KK+ + V+ Sbjct: 123 VDKLIPVDVYLPGCPPKPEAIIDAVIKLRKKVAQENLVE 161 >gi|34556898|ref|NP_906713.1| NADH dehydrogenase subunit B [Wolinella succinogenes DSM 1740] gi|81653582|sp|Q7MA50|NUOB_WOLSU RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|34482613|emb|CAE09613.1| NADH DEHYDROGENASE I CHAIN B [Wolinella succinogenes] Length = 169 Score = 220 bits (561), Expect = 8e-56, Method: Composition-based stats. Identities = 86/147 (58%), Positives = 113/147 (76%), Gaps = 1/147 (0%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 ++T+VD LV W R+ SL +T+GLACCA+EMM + RYD +RFG RASPRQ+DVMI Sbjct: 16 VVLTTVDHLVNWGRSNSLWALTYGLACCAIEMMASGAGRYDFDRFGTIFRASPRQADVMI 75 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGTLT K A +RR+YDQM EP++VISMGSCAN GG ++ +Y+ V+GCDRI+PVD+Y+P Sbjct: 76 VAGTLTKKHAEFIRRLYDQMSEPKWVISMGSCANTGGMFN-TYATVQGCDRIIPVDVYLP 134 Query: 158 GCPPTAEALIYGILLLQKKIRRVGNVK 184 GC P E L Y +++LQ+KIRR + Sbjct: 135 GCAPRPETLQYAVMVLQQKIRREKASR 161 >gi|154795232|ref|YP_636543.2| NADH dehydrogenase subunit K [Zygnema circumcarinatum] Length = 248 Score = 220 bits (561), Expect = 8e-56, Method: Composition-based stats. Identities = 66/153 (43%), Positives = 104/153 (67%), Gaps = 1/153 (0%) Query: 30 SSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS 89 + + + ++T++ + W R SL + +G +CC +E R+D +R+G PR+S Sbjct: 6 TKQNVYDSVVLTTLQDVSNWVRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSS 65 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGCDR 148 PRQ+D++I AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+ Sbjct: 66 PRQADLIITAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDK 125 Query: 149 IVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181 ++PVD+Y+PGCPP EA++ I+ L+KK+ + Sbjct: 126 LIPVDVYLPGCPPKPEAIVDAIIKLRKKVAQEN 158 >gi|147917399|gb|ABQ52523.1| NADH-plastoquinone oxidoreductase subunit K [Illicium oligandrum] Length = 283 Score = 220 bits (561), Expect = 8e-56, Method: Composition-based stats. Identities = 69/153 (45%), Positives = 102/153 (66%), Gaps = 1/153 (0%) Query: 29 ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88 + T + T+ + L W+R SL + +G +CC +E R+D +R+G PR+ Sbjct: 66 LLDRTTQNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRS 125 Query: 89 SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGCD 147 SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D Sbjct: 126 SPRQADIILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVD 185 Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 +++PVD+Y+PGCPP EA+I I L+KK+ R Sbjct: 186 KLIPVDVYLPGCPPKPEAIIDAITKLRKKLSRE 218 >gi|1173548|gb|AAC44353.1| NADH dehydrogenase type 1 subunit [Nostoc sp. PCC 7120] Length = 245 Score = 220 bits (561), Expect = 8e-56, Method: Composition-based stats. Identities = 73/168 (43%), Positives = 111/168 (66%), Gaps = 2/168 (1%) Query: 12 SGQSSCSLEKVDADFSR-ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMM 70 S ++ +E++ R ++ + ++T+VD L WAR SL + FG ACC +E Sbjct: 5 SDLTTQDIERIINPIERPTVTQDLSENVILTTVDDLYNWARLSSLWPLLFGTACCFIEFA 64 Query: 71 QASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCA 130 R+D +RFG PR+SPRQ+D++I AGT+T KMA + R+Y++MPEP+YVI+MG+C Sbjct: 65 ALIGSRFDFDRFGLIPRSSPRQADLIITAGTITMKMAPQMVRLYEKMPEPKYVIAMGACT 124 Query: 131 NGGGYYH-YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 GG + S + VRG D+++PVD+Y+PGCPP EA+I ++ L+KKI Sbjct: 125 ITGGMFSVESPTAVRGVDKLIPVDVYLPGCPPRPEAIIDAMIKLRKKI 172 >gi|7636113|emb|CAB88733.1| NADH dehydrogenase 32kDa subunit [Spinacia oleracea] Length = 281 Score = 220 bits (561), Expect = 8e-56, Method: Composition-based stats. Identities = 74/173 (42%), Positives = 110/173 (63%), Gaps = 5/173 (2%) Query: 13 GQSSCSLEKVDADFSRIS----SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVE 68 + S +K++ + I +I + T+ + L W+R SL + +G +CC +E Sbjct: 42 PEDSDKKKKIETVMNSIEFPLLDQIAQNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIE 101 Query: 69 MMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGS 128 R+D +R+G PRASPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+ Sbjct: 102 FASLIGSRFDFDRYGLVPRASPRQADLILTAGTVTMKMAPSLLRLYEQMPEPKYVIAMGA 161 Query: 129 CANGGGYYH-YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 C GG + SYS VRG D+++PVD+Y+PGCPP EA+I I L+KKI R Sbjct: 162 CTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 214 >gi|122893994|ref|YP_001004190.1| NADH-plastoquinone oxidoreductase subunit K [Ranunculus macranthus] gi|218527923|sp|A1XGP2|NDHK_RANMC RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K gi|85540808|gb|ABC70760.1| NADH-plastoquinone oxidoreductase subunit K [Ranunculus macranthus] Length = 227 Score = 220 bits (560), Expect = 8e-56, Method: Composition-based stats. Identities = 69/154 (44%), Positives = 104/154 (67%), Gaps = 1/154 (0%) Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87 + ++ T + T+ + L W+R SL + +G +CC +E R+D +R+G PR Sbjct: 7 PLLNQTTQNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66 Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146 +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG Sbjct: 67 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126 Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 D+++PVD+Y+PGCPP EA+I I L+KK+ R Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKVSRE 160 >gi|317968579|ref|ZP_07969969.1| NADH dehydrogenase subunit B [Synechococcus sp. CB0205] Length = 249 Score = 220 bits (560), Expect = 8e-56, Method: Composition-based stats. Identities = 70/145 (48%), Positives = 102/145 (70%), Gaps = 1/145 (0%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93 + ++T++D L WAR SL + +G ACC +E R+D +RFG PR+SPRQ+ Sbjct: 39 LSENVILTTLDDLHNWARLSSLWPLLYGTACCFIEFAALIGSRFDFDRFGLVPRSSPRQA 98 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGCDRIVPV 152 D++IVAGT+T KMA AL R+Y+QMPEP+YVI+MG+C GG + S + VRG D+++PV Sbjct: 99 DLLIVAGTVTMKMAPALVRLYEQMPEPKYVIAMGACTITGGMFSADSTTAVRGVDKLIPV 158 Query: 153 DIYVPGCPPTAEALIYGILLLQKKI 177 D+Y+PGCPP EA+ ++ L+KK+ Sbjct: 159 DLYLPGCPPRPEAIFDAVVKLRKKV 183 >gi|297837993|ref|XP_002886878.1| NADH dehydrogenase subunit K [Arabidopsis lyrata subsp. lyrata] gi|297332719|gb|EFH63137.1| NADH dehydrogenase subunit K [Arabidopsis lyrata subsp. lyrata] Length = 225 Score = 220 bits (560), Expect = 8e-56, Method: Composition-based stats. Identities = 71/154 (46%), Positives = 104/154 (67%), Gaps = 1/154 (0%) Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87 + T K + T+++ L W+R SL + +G +CC +E R+D +R+G PR Sbjct: 7 PVLDRTTKKSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66 Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146 +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG Sbjct: 67 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126 Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 D+++PVD+Y+PGCPP EA+I I L+KKI R Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKIARE 160 >gi|290489732|gb|ADD31250.1| NADH-plastoquinone oxidoreductase subunit K protein [Ficus sp. Moore 315] Length = 253 Score = 220 bits (560), Expect = 8e-56, Method: Composition-based stats. Identities = 70/154 (45%), Positives = 101/154 (65%), Gaps = 1/154 (0%) Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87 + T + T+ L W+R SL + +G +CC +E R+D +R+G PR Sbjct: 35 PLLDRTTQNSVISTTSSDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 94 Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146 +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG Sbjct: 95 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 154 Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 D+++PVD+Y+PGCPP EA+I I L+KKI R Sbjct: 155 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 188 >gi|114804269|ref|YP_762265.1| NADH-plastoquinone oxidoreductase subunit K [Morus indica] gi|78100321|gb|ABB20962.1| NADH-plastoquinone oxidoreductase subunit K [Morus indica] Length = 282 Score = 220 bits (560), Expect = 8e-56, Method: Composition-based stats. Identities = 70/154 (45%), Positives = 101/154 (65%), Gaps = 1/154 (0%) Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87 + T + T+ L W+R SL + +G +CC +E R+D +R+G PR Sbjct: 64 PLLDRTTQNSVISTTSSDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 123 Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146 +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG Sbjct: 124 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 183 Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 D+++PVD+Y+PGCPP EA+I I L+KKI R Sbjct: 184 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 217 >gi|154795253|ref|YP_001294274.2| NADH-plastoquinone oxidoreductase subunit K [Illicium oligandrum] gi|218527944|sp|A6MMU8|NDHK_ILLOL RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K Length = 225 Score = 220 bits (560), Expect = 8e-56, Method: Composition-based stats. Identities = 69/153 (45%), Positives = 102/153 (66%), Gaps = 1/153 (0%) Query: 29 ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88 + T + T+ + L W+R SL + +G +CC +E R+D +R+G PR+ Sbjct: 8 LLDRTTQNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRS 67 Query: 89 SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGCD 147 SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D Sbjct: 68 SPRQADIILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVD 127 Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 +++PVD+Y+PGCPP EA+I I L+KK+ R Sbjct: 128 KLIPVDVYLPGCPPKPEAIIDAITKLRKKLSRE 160 >gi|115391908|ref|YP_778496.1| NADH dehydrogenase subunit K [Jasminum nudiflorum] gi|122164967|sp|Q06RC5|NDHK_JASNU RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K gi|110456229|gb|ABG74634.1| NADH dehydrogenase 32 kDa subunit [Jasminum nudiflorum] gi|110456646|gb|ABG74765.1| NADH dehydrogenase 32 kDa subunit [Jasminum leratii] gi|110456683|gb|ABG74792.1| NADH dehydrogenase 32 kDa subunit [Jasminum abyssinicum] gi|110456715|gb|ABG74818.1| NADH dehydrogenase 32 kDa subunit [Jasminum subhumile] Length = 213 Score = 220 bits (560), Expect = 8e-56, Method: Composition-based stats. Identities = 69/154 (44%), Positives = 102/154 (66%), Gaps = 1/154 (0%) Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87 + + T+++ L W+R SL + +G +CC +E R+D +R+G PR Sbjct: 7 PLLDQTVQNSVFSTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66 Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146 +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG Sbjct: 67 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126 Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 D+++PVD+Y+PGCPP EA+I I L+KKI R Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 160 >gi|154795222|ref|YP_319769.3| NADH dehydrogenase subunit K [Acorus calamus] gi|161622314|ref|YP_001586186.1| NADH dehydrogenase subunit K [Acorus americanus] gi|218527878|sp|A9LYA5|NDHK_ACOAM RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K gi|218527908|sp|Q3V530|NDHK_ACOCL RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K gi|160369857|gb|ABX38748.1| NADH-plastoquinone oxidoreductase subunit K [Acorus americanus] Length = 239 Score = 220 bits (560), Expect = 9e-56, Method: Composition-based stats. Identities = 69/154 (44%), Positives = 103/154 (66%), Gaps = 1/154 (0%) Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87 + T + T+++ L W+R SL + +G +CC +E R+D +R+G PR Sbjct: 7 PLLDRTTPNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66 Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146 +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG Sbjct: 67 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126 Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 D+++PVD+Y+PGCPP EA+I I L+KK+ R Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKLSRE 160 >gi|139388098|ref|YP_001123290.1| photosystem II G protein [Barbarea verna] gi|218527881|sp|A4QKA9|NDHK_BARVE RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K gi|134286489|dbj|BAF50114.1| photosystem II G protein [Barbarea verna] Length = 225 Score = 220 bits (560), Expect = 9e-56, Method: Composition-based stats. Identities = 70/154 (45%), Positives = 103/154 (66%), Gaps = 1/154 (0%) Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87 + T + T+++ L W+R SL + +G +CC +E R+D +R+G PR Sbjct: 7 PVLDRTTKNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66 Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146 +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG Sbjct: 67 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126 Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 D+++PVD+Y+PGCPP EA+I I L+KKI R Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKIARE 160 >gi|297585416|ref|YP_003701196.1| NADH-quinone oxidoreductase subunit B [Bacillus selenitireducens MLS10] gi|297143873|gb|ADI00631.1| NADH-quinone oxidoreductase, B subunit [Bacillus selenitireducens MLS10] Length = 175 Score = 220 bits (560), Expect = 9e-56, Method: Composition-based stats. Identities = 86/153 (56%), Positives = 108/153 (70%) Query: 26 FSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA 85 + E +K T VDQ+ W+RT S ++FGLACCA+EMM RYD +RFG Sbjct: 12 YDPRVMEDINKNVFFTKVDQIKAWSRTRSFWPLSFGLACCAIEMMATGGNRYDFDRFGVI 71 Query: 86 PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRG 145 RASPR +DVMIVAGT+T KMA LR +YDQMPEP++VI+MGSCA GG Y +YSV+ G Sbjct: 72 FRASPRHADVMIVAGTVTGKMAPVLRTLYDQMPEPKWVIAMGSCATCGGPYKEAYSVLNG 131 Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 D+IVPVD+YV GCPPT AL+ G+ L++KIR Sbjct: 132 VDKIVPVDVYVSGCPPTPPALLDGVERLREKIR 164 >gi|218527906|sp|A1EA12|NDHK_AGRST RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K Length = 225 Score = 220 bits (560), Expect = 9e-56, Method: Composition-based stats. Identities = 68/154 (44%), Positives = 103/154 (66%), Gaps = 1/154 (0%) Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87 + + + + T+ + L W+R SL + +G +CC +E R+D +R+G PR Sbjct: 7 PLLDQTSSNSVISTTPNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66 Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146 +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG Sbjct: 67 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126 Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 D+++PVD+Y+PGCPP EA+I + L+KKI R Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDALTKLRKKISRE 160 >gi|323149086|ref|YP_004222650.1| NADH-plastoquinone oxidoreductase subunit K [Anthriscus cerefolium] gi|289645579|gb|ADD13642.1| NADH-plastoquinone oxidoreductase subunit K [Anthriscus cerefolium] Length = 225 Score = 220 bits (560), Expect = 9e-56, Method: Composition-based stats. Identities = 70/154 (45%), Positives = 102/154 (66%), Gaps = 1/154 (0%) Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87 + T + T+ + L W+R SL + +G +CC +E R+D +R+G PR Sbjct: 7 PLLDRTTQNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66 Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146 +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG Sbjct: 67 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTISGGMFSTDSYSTVRGV 126 Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 D+++PVD+Y+PGCPP EA+I I L+KKI R Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 160 >gi|290489734|gb|ADD31251.1| NADH-plastoquinone oxidoreductase subunit K protein [Gunnera manicata] Length = 283 Score = 220 bits (560), Expect = 9e-56, Method: Composition-based stats. Identities = 70/154 (45%), Positives = 102/154 (66%), Gaps = 1/154 (0%) Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87 + T + T+ + L W+R SL + +G +CC +E R+D +R+G PR Sbjct: 65 PLLDRTTQNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 124 Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146 +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG Sbjct: 125 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 184 Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 D+++PVD+Y+PGCPP EA+I I L+KKI R Sbjct: 185 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 218 >gi|66876455|gb|AAY58009.1| NdhK [Dinetus truncatus] Length = 224 Score = 220 bits (560), Expect = 9e-56, Method: Composition-based stats. Identities = 69/160 (43%), Positives = 105/160 (65%), Gaps = 1/160 (0%) Query: 22 VDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLER 81 +++ + + + T+ + L W+R SL + +G +CC +E R+D +R Sbjct: 1 MNSIQFPLLDQRAKNSVISTTFNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDR 60 Query: 82 FGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSY 140 +G PR+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SY Sbjct: 61 YGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSY 120 Query: 141 SVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 S VRG D+++PVD+Y+PGCPP EA+I I L+KKI R Sbjct: 121 STVRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 160 >gi|313903494|ref|ZP_07836885.1| NADH dehydrogenase subunit B [Thermaerobacter subterraneus DSM 13965] gi|313466315|gb|EFR61838.1| NADH dehydrogenase subunit B [Thermaerobacter subterraneus DSM 13965] Length = 193 Score = 220 bits (560), Expect = 9e-56, Method: Composition-based stats. Identities = 83/145 (57%), Positives = 106/145 (73%) Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVM 96 G + T++ LV W R SL ++ FG+ACCA+EMM A R DL+R G RASPRQ+D+M Sbjct: 46 GVITTNLQTLVNWGRKNSLWYLLFGIACCAIEMMAAGASRIDLDRLGSVFRASPRQADMM 105 Query: 97 IVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV 156 IVAGT+T KMA ++ +YDQM EPRYVI+MG+CA+ GG Y+ Y+VV G D+IVPVD+YV Sbjct: 106 IVAGTVTEKMAPVIKTLYDQMAEPRYVIAMGACASNGGPYYQGYNVVDGVDKIVPVDVYV 165 Query: 157 PGCPPTAEALIYGILLLQKKIRRVG 181 GCPP EALIY I+ LQ K+ R Sbjct: 166 AGCPPRPEALIYAIMKLQDKVARAN 190 >gi|295065732|ref|YP_003587672.1| NADH dehydrogenase subunit K [Anomochloa marantoidea] gi|251765256|gb|ACT15410.1| NADH dehydrogenase subunit K [Anomochloa marantoidea] Length = 222 Score = 220 bits (560), Expect = 9e-56, Method: Composition-based stats. Identities = 69/154 (44%), Positives = 103/154 (66%), Gaps = 1/154 (0%) Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87 + + T + T+ + L W+R SL + +G +CC +E R+D +R+G PR Sbjct: 7 PLLDQTTSNSVISTTPNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66 Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146 +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG Sbjct: 67 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126 Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 D+++PVD+Y+PGCPP EA+I + L+KKI R Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDALTKLRKKISRE 160 >gi|228936583|ref|ZP_04099378.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228823098|gb|EEM68935.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 148 Score = 220 bits (560), Expect = 9e-56, Method: Composition-based stats. Identities = 88/141 (62%), Positives = 108/141 (76%) Query: 43 VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL 102 ++QL WAR+ SL MTFGLACCA+EMM YDL+RFG R SPRQSDVMIV+GT+ Sbjct: 1 MEQLKGWARSNSLWPMTFGLACCAIEMMGVGSSHYDLDRFGSFFRTSPRQSDVMIVSGTV 60 Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162 T KMA +RR+YDQMPEP++VI+MGSCA GG Y SY+VV+G D+IVPVD+Y+PGCPP Sbjct: 61 TKKMAPIVRRLYDQMPEPKWVIAMGSCATAGGPYVNSYAVVKGVDQIVPVDVYIPGCPPN 120 Query: 163 AEALIYGILLLQKKIRRVGNV 183 ALIYGI L++KIR + Sbjct: 121 PAALIYGINKLKEKIRYEAKI 141 >gi|154795227|ref|NP_904103.3| NADH dehydrogenase subunit K [Amborella trichopoda] gi|218527907|sp|Q70XZ9|NDHK_AMBTC RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K Length = 225 Score = 220 bits (560), Expect = 9e-56, Method: Composition-based stats. Identities = 69/154 (44%), Positives = 102/154 (66%), Gaps = 1/154 (0%) Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87 + T + T+ + L W+R SL + +G +CC +E R+D +R+G PR Sbjct: 7 PLLDRTTPNSVISTTPNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66 Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146 +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG Sbjct: 67 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126 Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 D+++PVD+Y+PGCPP EA+I I L+KK+ R Sbjct: 127 DKLIPVDVYLPGCPPKPEAIIDAITKLRKKVSRE 160 >gi|290489712|gb|ADD31240.1| NADH-plastoquinone oxidoreductase subunit K protein [Ilex cornuta] Length = 225 Score = 220 bits (560), Expect = 1e-55, Method: Composition-based stats. Identities = 70/160 (43%), Positives = 105/160 (65%), Gaps = 1/160 (0%) Query: 22 VDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLER 81 +++ + T + T+ + L W+R SL + +G +CC +E R+D +R Sbjct: 1 MNSIQFPLLERTTQNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDR 60 Query: 82 FGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSY 140 +G PR+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SY Sbjct: 61 YGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSY 120 Query: 141 SVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 S VRG D+++PVD+Y+PGCPP EA+I I L+KKI R Sbjct: 121 STVRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 160 >gi|114329660|ref|YP_740479.1| NADH-plastoquinone oxidoreductase subunit K [Citrus sinensis] gi|122166179|sp|Q09MH4|NDHK_CITSI RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K gi|113952626|gb|ABI49024.1| NADH-plastoquinone oxidoreductase subunit K [Citrus sinensis] Length = 227 Score = 220 bits (560), Expect = 1e-55, Method: Composition-based stats. Identities = 71/153 (46%), Positives = 103/153 (67%), Gaps = 1/153 (0%) Query: 29 ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88 + T F+ T+ + L W+R SL + +G +CC +E R+D +R+G PR+ Sbjct: 8 LLDRTTPNSFISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRS 67 Query: 89 SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGCD 147 SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D Sbjct: 68 SPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVD 127 Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 +++PVD+Y+PGCPP EA+I I L+KKI R Sbjct: 128 KLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 160 >gi|154795224|ref|YP_054635.2| NADH dehydrogenase subunit K [Saccharum officinarum] gi|154795225|ref|YP_899411.2| NADH-plastoquinone oxidoreductase subunit K [Sorghum bicolor] gi|154795226|ref|NP_043029.2| NADH dehydrogenase subunit K [Zea mays] gi|154795254|ref|YP_024383.2| NADH dehydrogenase subunit K [Saccharum hybrid cultivar SP-80-3280] gi|242057527|ref|XP_002457909.1| hypothetical protein SORBIDRAFT_03g020200 [Sorghum bicolor] gi|218511709|sp|Q6L395|NDHK_SACHY RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K gi|218511710|sp|Q6ENV9|NDHK_SACOF RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K gi|218527954|sp|A1E9S8|NDHK_SORBI RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K gi|241929884|gb|EES03029.1| hypothetical protein SORBIDRAFT_03g020200 [Sorghum bicolor] Length = 227 Score = 220 bits (560), Expect = 1e-55, Method: Composition-based stats. Identities = 68/154 (44%), Positives = 103/154 (66%), Gaps = 1/154 (0%) Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87 + + + + T+ + L W+R SL + +G +CC +E R+D +R+G PR Sbjct: 7 PLLDQTSSNSVISTTPNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66 Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146 +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG Sbjct: 67 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126 Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 D+++PVD+Y+PGCPP EA+I + L+KKI R Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDALTKLRKKIARE 160 >gi|149390544|ref|YP_001294188.1| NADH-plastoquinone oxidoreductase subunit K [Buxus microphylla] gi|146762289|gb|ABQ45253.1| NADH-plastoquinone oxidoreductase subunit K [Buxus microphylla] Length = 257 Score = 220 bits (560), Expect = 1e-55, Method: Composition-based stats. Identities = 74/181 (40%), Positives = 111/181 (61%), Gaps = 2/181 (1%) Query: 1 MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTF 60 M L N K ++ + +F + T + T+ + L W+R SL + + Sbjct: 38 MVLVPDNNKKKEEKNYIEIVMNSIEFP-LVDRTTQNSVISTTSNDLSNWSRLSSLWPLLY 96 Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 G +CC +E R+D +R+G PR+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP Sbjct: 97 GTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEP 156 Query: 121 RYVISMGSCANGGGYYH-YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179 +YVI+MG+C GG + SYS VRG D+++PVD+Y+PGCPP EA+I I L+KK+ R Sbjct: 157 KYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKKVSR 216 Query: 180 V 180 Sbjct: 217 E 217 >gi|126165891|ref|NP_783236.2| NADH dehydrogenase subunit K [Atropa belladonna] Length = 247 Score = 220 bits (560), Expect = 1e-55, Method: Composition-based stats. Identities = 69/160 (43%), Positives = 105/160 (65%), Gaps = 1/160 (0%) Query: 22 VDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLER 81 +++ + + T+++ L W+R SL + +G +CC +E R+D +R Sbjct: 23 MNSIQFPLLDRTAQNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDR 82 Query: 82 FGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSY 140 +G PR+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SY Sbjct: 83 YGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSY 142 Query: 141 SVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 S VRG D+++PVD+Y+PGCPP EA+I I L+KKI R Sbjct: 143 STVRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 182 >gi|228917908|ref|ZP_04081444.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228949019|ref|ZP_04111292.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228968422|ref|ZP_04129414.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors [Bacillus thuringiensis serovar sotto str. T04001] gi|228988523|ref|ZP_04148611.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229076513|ref|ZP_04209474.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors [Bacillus cereus Rock4-18] gi|229094409|ref|ZP_04225481.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors [Bacillus cereus Rock3-42] gi|229099732|ref|ZP_04230658.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors [Bacillus cereus Rock3-29] gi|229118795|ref|ZP_04248145.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors [Bacillus cereus Rock1-3] gi|229124802|ref|ZP_04253981.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors [Bacillus cereus 95/8201] gi|229142039|ref|ZP_04270564.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors [Bacillus cereus BDRD-ST26] gi|229175973|ref|ZP_04303469.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors [Bacillus cereus MM3] gi|228607466|gb|EEK64792.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors [Bacillus cereus MM3] gi|228641328|gb|EEK97634.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors [Bacillus cereus BDRD-ST26] gi|228658677|gb|EEL14338.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors [Bacillus cereus 95/8201] gi|228664665|gb|EEL20157.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors [Bacillus cereus Rock1-3] gi|228683702|gb|EEL37654.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors [Bacillus cereus Rock3-29] gi|228688946|gb|EEL42773.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors [Bacillus cereus Rock3-42] gi|228706605|gb|EEL58817.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors [Bacillus cereus Rock4-18] gi|228771203|gb|EEM19681.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228791270|gb|EEM38880.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors [Bacillus thuringiensis serovar sotto str. T04001] gi|228810775|gb|EEM57123.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228841705|gb|EEM86816.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 148 Score = 219 bits (559), Expect = 1e-55, Method: Composition-based stats. Identities = 88/136 (64%), Positives = 107/136 (78%) Query: 43 VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL 102 ++QL WAR+ SL MTFGLACCA+EMM YDL+RFG R SPRQSDVMIV+GT+ Sbjct: 1 MEQLKGWARSNSLWPMTFGLACCAIEMMGVGSSHYDLDRFGSFFRTSPRQSDVMIVSGTV 60 Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162 T KMA +RR+YDQMPEP++VI+MGSCA GG Y SY+VV+G D+IVPVD+Y+PGCPP Sbjct: 61 TKKMAPIVRRLYDQMPEPKWVIAMGSCATAGGPYVNSYAVVKGVDQIVPVDVYIPGCPPN 120 Query: 163 AEALIYGILLLQKKIR 178 ALIYGI L++KIR Sbjct: 121 PAALIYGINKLKEKIR 136 >gi|290489706|gb|ADD31237.1| NADH-plastoquinone oxidoreductase subunit K protein [Aucuba japonica] Length = 254 Score = 219 bits (559), Expect = 1e-55, Method: Composition-based stats. Identities = 70/154 (45%), Positives = 103/154 (66%), Gaps = 1/154 (0%) Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87 + T + T+++ L W+R SL + +G +CC +E R+D +R+G PR Sbjct: 36 PLLDRTTPNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 95 Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146 +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG Sbjct: 96 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 155 Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 D+++PVD+Y+PGCPP EA+I I L+KKI R Sbjct: 156 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 189 >gi|156586759|gb|ABU85211.1| NADH-plastoquinone oxidoreductase subunit K [Anethum graveolens] Length = 225 Score = 219 bits (559), Expect = 1e-55, Method: Composition-based stats. Identities = 70/154 (45%), Positives = 102/154 (66%), Gaps = 1/154 (0%) Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87 + T + T+ + L W+R SL + +G +CC +E R+D +R+G PR Sbjct: 7 PLLDRTTQNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66 Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146 +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG Sbjct: 67 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTISGGMFSTDSYSTVRGV 126 Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 D+++PVD+Y+PGCPP EA+I I L+KKI R Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 160 >gi|290489746|gb|ADD31257.1| NADH-plastoquinone oxidoreductase subunit K protein [Staphylea colchica] Length = 226 Score = 219 bits (559), Expect = 1e-55, Method: Composition-based stats. Identities = 69/154 (44%), Positives = 101/154 (65%), Gaps = 1/154 (0%) Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87 + + T+ + L W+R SL + +G +CC +E R+D +R+G PR Sbjct: 7 PLLERTAQNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66 Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146 +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG Sbjct: 67 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126 Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 D+++PVD+Y+PGCPP EA+I I L+KKI R Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 160 >gi|139389422|ref|YP_001123119.1| NADH dehydrogenase subunit K [Olimarabidopsis pumila] gi|218527928|sp|A4QJT7|NDHK_OLIPU RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K gi|134286316|dbj|BAF49943.1| photosystem II G protein [Olimarabidopsis pumila] Length = 225 Score = 219 bits (559), Expect = 1e-55, Method: Composition-based stats. Identities = 70/154 (45%), Positives = 103/154 (66%), Gaps = 1/154 (0%) Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87 + T + T+++ L W+R SL + +G +CC +E R+D +R+G PR Sbjct: 7 PVLDRTTKNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66 Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146 +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG Sbjct: 67 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126 Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 D+++PVD+Y+PGCPP EA+I I L+KKI R Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKIARE 160 >gi|218527959|sp|Q09X13|NDHK_MORIN RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K Length = 226 Score = 219 bits (559), Expect = 1e-55, Method: Composition-based stats. Identities = 70/154 (45%), Positives = 101/154 (65%), Gaps = 1/154 (0%) Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87 + T + T+ L W+R SL + +G +CC +E R+D +R+G PR Sbjct: 8 PLLDRTTQNSVISTTSSDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 67 Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146 +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG Sbjct: 68 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 127 Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 D+++PVD+Y+PGCPP EA+I I L+KKI R Sbjct: 128 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 161 >gi|7525037|ref|NP_051063.1| NADH dehydrogenase subunit K [Arabidopsis thaliana] gi|6685682|sp|P56756|NDHK_ARATH RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K gi|5881698|dbj|BAA84389.1| photosystem II G protein [Arabidopsis thaliana] Length = 225 Score = 219 bits (559), Expect = 1e-55, Method: Composition-based stats. Identities = 71/154 (46%), Positives = 103/154 (66%), Gaps = 1/154 (0%) Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87 I T + T+++ L W+R SL + +G +CC +E R+D +R+G PR Sbjct: 7 PILDRTTKNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66 Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146 +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG Sbjct: 67 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126 Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 D+++PVD+Y+PGCPP EA+I I L+KKI R Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKIARE 160 >gi|313183927|ref|YP_004021781.1| NADH-plastoquinone oxidoreductase subunit K [Equisetum arvense] gi|281371647|gb|ADA63580.1| NADH-plastoquinone oxidoreductase subunit K [Equisetum arvense] Length = 250 Score = 219 bits (559), Expect = 1e-55, Method: Composition-based stats. Identities = 72/177 (40%), Positives = 116/177 (65%), Gaps = 8/177 (4%) Query: 6 VNQKIISGQSSCSLEK-VDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLAC 64 +N II + S+E +D++ + + + ++T++ WAR SL + +G +C Sbjct: 10 LNPSIIHEKIRFSMEPSIDSNTNELDA------IILTNLKDFSNWARLSSLWPLLYGTSC 63 Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E R+D +R+G PR+SPRQ+D++I AGT+T KMA +L R+Y+QMPEP+YVI Sbjct: 64 CFIEFASLIGSRFDFDRYGLVPRSSPRQADLLITAGTVTMKMAPSLVRLYEQMPEPKYVI 123 Query: 125 SMGSCANGGGYYH-YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 +MG+C GG + SYS VRG D+++PV++Y+PGCPP EA+I ++ L+K++ R Sbjct: 124 AMGACTITGGMFSTDSYSTVRGVDKLIPVNVYLPGCPPKPEAIIDAVVKLRKEVARE 180 >gi|154795256|ref|YP_784390.2| NADH-plastoquinone oxidoreductase subunit K [Drimys granadensis] gi|218527894|sp|Q06GZ3|NDHK_DRIGR RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K Length = 227 Score = 219 bits (559), Expect = 1e-55, Method: Composition-based stats. Identities = 69/154 (44%), Positives = 102/154 (66%), Gaps = 1/154 (0%) Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87 + T + T+ + L W+R SL + +G +CC +E R+D +R+G PR Sbjct: 7 PLLDRTTQNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66 Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146 +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG Sbjct: 67 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126 Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 D+++PVD+Y+PGCPP EA+I I L+KK+ R Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKVSRE 160 >gi|154795216|ref|YP_740206.2| NADH-plastoquinone oxidoreductase subunit K [Liriodendron tulipifera] gi|218527962|sp|Q0G9L5|NDHK_LIRTU RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K Length = 225 Score = 219 bits (559), Expect = 1e-55, Method: Composition-based stats. Identities = 69/154 (44%), Positives = 102/154 (66%), Gaps = 1/154 (0%) Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87 + T + T+ + L W+R SL + +G +CC +E R+D +R+G PR Sbjct: 7 PLLDRTTQNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66 Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146 +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG Sbjct: 67 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126 Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 D+++PVD+Y+PGCPP EA+I I L+KK+ R Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKVSRE 160 >gi|283782292|ref|YP_003373047.1| NADH-quinone oxidoreductase, B subunit [Pirellula staleyi DSM 6068] gi|283440745|gb|ADB19187.1| NADH-quinone oxidoreductase, B subunit [Pirellula staleyi DSM 6068] Length = 227 Score = 219 bits (559), Expect = 1e-55, Method: Composition-based stats. Identities = 87/175 (49%), Positives = 120/175 (68%), Gaps = 7/175 (4%) Query: 6 VNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACC 65 VNQ+ Q L +R+ + TSV+Q + WAR S+ MTFGLACC Sbjct: 7 VNQQAGQQQLLEMLASQPWIEARV-----EENVFTTSVEQAINWARQSSIWPMTFGLACC 61 Query: 66 AVEMMQASMPRYDLERFGF-APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 A+EMM A RYD++RFG A RA+PRQ+D+MIVAGT+T KMAS +RR+Y+ MP+P++VI Sbjct: 62 AIEMMAAGASRYDMDRFGAGAFRATPRQADLMIVAGTVTYKMASRVRRLYNMMPDPKFVI 121 Query: 125 SMGSCANGGGY-YHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 +MG+C GGG + + Y VV+G D +VPVD+Y+PGCPP EAL+ G++ +Q KI+ Sbjct: 122 AMGACTVGGGPYFKWGYHVVKGVDLVVPVDVYIPGCPPRPEALLEGLMRIQDKIK 176 >gi|218512132|sp|Q2MI96|NDHK_SOLLC RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K gi|218512133|sp|Q2VEH3|NDHK_SOLTU RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K gi|218527953|sp|Q2MII3|NDHK_SOLBU RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K Length = 225 Score = 219 bits (559), Expect = 1e-55, Method: Composition-based stats. Identities = 70/160 (43%), Positives = 105/160 (65%), Gaps = 1/160 (0%) Query: 22 VDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLER 81 +++ + + T+++ L W+R SL + +G +CC +E R+D +R Sbjct: 1 MNSIQFPLLDRTAPNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDR 60 Query: 82 FGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSY 140 +G PR+SPRQSD+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SY Sbjct: 61 YGLVPRSSPRQSDLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSY 120 Query: 141 SVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 S VRG D+++PVD+Y+PGCPP EA+I I L+KKI R Sbjct: 121 STVRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 160 >gi|66876449|gb|AAY58005.1| NdhK [Evolvulus glomeratus] Length = 228 Score = 219 bits (559), Expect = 1e-55, Method: Composition-based stats. Identities = 69/146 (47%), Positives = 101/146 (69%), Gaps = 1/146 (0%) Query: 36 KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDV 95 + T+++ L W+R SL + +G +CC +E R+D +R+G PR+SPRQ+D+ Sbjct: 22 NSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADL 81 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGCDRIVPVDI 154 ++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++PVD+ Sbjct: 82 ILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDV 141 Query: 155 YVPGCPPTAEALIYGILLLQKKIRRV 180 Y+PGCPP EA+I I L+KKI R Sbjct: 142 YLPGCPPKPEAVIDAITKLRKKISRE 167 >gi|239610399|gb|EEQ87386.1| NADH-ubiquinone oxidoreductase 20 kDa subunit [Ajellomyces dermatitidis ER-3] Length = 245 Score = 219 bits (559), Expect = 1e-55, Method: Composition-based stats. Identities = 94/161 (58%), Positives = 121/161 (75%) Query: 17 CSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPR 76 +E+ + + G + S+D + W R SL ++ GLACC +EMM SMPR Sbjct: 72 ARMERSSSLLPSQDEKTGTMGHFLGSIDAVANWGRQASLWPISLGLACCGLEMMAVSMPR 131 Query: 77 YDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY 136 YD +R G RASPRQSD++IVAGT+TNKMA ALR VYDQMP+P++VISMGSCANGGGYY Sbjct: 132 YDQDRLGTIFRASPRQSDLLIVAGTVTNKMAPALRLVYDQMPDPKWVISMGSCANGGGYY 191 Query: 137 HYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 HYSYSVVRG DR++PVD+Y+PGCPPTAEAL+Y I ++++K+ Sbjct: 192 HYSYSVVRGVDRLLPVDVYLPGCPPTAEALMYAISVVRRKL 232 >gi|34481633|emb|CAD45111.1| photosystem II G protein [Amborella trichopoda] Length = 283 Score = 219 bits (559), Expect = 1e-55, Method: Composition-based stats. Identities = 69/154 (44%), Positives = 102/154 (66%), Gaps = 1/154 (0%) Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87 + T + T+ + L W+R SL + +G +CC +E R+D +R+G PR Sbjct: 65 PLLDRTTPNSVISTTPNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 124 Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146 +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG Sbjct: 125 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 184 Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 D+++PVD+Y+PGCPP EA+I I L+KK+ R Sbjct: 185 DKLIPVDVYLPGCPPKPEAIIDAITKLRKKVSRE 218 >gi|261195670|ref|XP_002624239.1| NADH-ubiquinone oxidoreductase 20 kDa subunit [Ajellomyces dermatitidis SLH14081] gi|239588111|gb|EEQ70754.1| NADH-ubiquinone oxidoreductase 20 kDa subunit [Ajellomyces dermatitidis SLH14081] Length = 244 Score = 219 bits (559), Expect = 1e-55, Method: Composition-based stats. Identities = 94/161 (58%), Positives = 121/161 (75%) Query: 17 CSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPR 76 +E+ + + G + S+D + W R SL ++ GLACC +EMM SMPR Sbjct: 71 ARMERSTSLLPSQDEKTGTMGHFLGSIDAVANWGRQASLWPISLGLACCGLEMMAVSMPR 130 Query: 77 YDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY 136 YD +R G RASPRQSD++IVAGT+TNKMA ALR VYDQMP+P++VISMGSCANGGGYY Sbjct: 131 YDQDRLGTIFRASPRQSDLLIVAGTVTNKMAPALRLVYDQMPDPKWVISMGSCANGGGYY 190 Query: 137 HYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 HYSYSVVRG DR++PVD+Y+PGCPPTAEAL+Y I ++++K+ Sbjct: 191 HYSYSVVRGVDRLLPVDVYLPGCPPTAEALMYAISVVRRKL 231 >gi|108802647|ref|YP_636303.1| NADH dehydrogenase subunit K [Eucalyptus globulus subsp. globulus] gi|60460813|gb|AAX21033.1| NADH-plastoquinone oxidoreductase subunit K [Eucalyptus globulus subsp. globulus] Length = 284 Score = 219 bits (559), Expect = 1e-55, Method: Composition-based stats. Identities = 70/154 (45%), Positives = 104/154 (67%), Gaps = 1/154 (0%) Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87 + + T + T+++ L W+R SL + +G +CC +E R+D +R+G PR Sbjct: 66 PLLARTTQNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 125 Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146 +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG Sbjct: 126 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 185 Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 D+++PVD+Y+PGCPP EA+I I L+KKI R Sbjct: 186 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKIARE 219 >gi|37520318|ref|NP_923695.1| NADH dehydrogenase subunit B [Gloeobacter violaceus PCC 7421] gi|81710972|sp|Q7NML6|NDHK1_GLOVI RecName: Full=NAD(P)H-quinone oxidoreductase subunit K 1; AltName: Full=NAD(P)H dehydrogenase I subunit K 1; AltName: Full=NDH-1 subunit K 1; Short=NDH-K 1 gi|35211311|dbj|BAC88690.1| NADH dehydrogenase subunit [Gloeobacter violaceus PCC 7421] Length = 232 Score = 219 bits (559), Expect = 1e-55, Method: Composition-based stats. Identities = 71/157 (45%), Positives = 108/157 (68%), Gaps = 2/157 (1%) Query: 22 VDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLER 81 + ++SE+T+ ++T+++ L WAR S+ + +G +CC +E R+D +R Sbjct: 8 NPIERPEVTSELTN-NVVLTTLNDLYNWARLSSVWPLMYGTSCCFIEFAGLIGSRFDFDR 66 Query: 82 FGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSY 140 FG PRASPRQ+D++I AGT+T KMA AL +Y+QMPEP+YVI+MG+C GG + SY Sbjct: 67 FGLVPRASPRQADLIITAGTVTMKMAPALVTLYEQMPEPKYVIAMGACTITGGMFSTDSY 126 Query: 141 SVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 + VRG D+++PVD+Y+PGCPP EA+ I+ L+KK+ Sbjct: 127 TTVRGVDKLIPVDVYIPGCPPRPEAIFDAIVKLRKKM 163 >gi|119356790|ref|YP_911434.1| NADH-quinone oxidoreductase, B subunit [Chlorobium phaeobacteroides DSM 266] gi|238055286|sp|A1BF33|NUOB_CHLPD RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|119354139|gb|ABL65010.1| NADH dehydrogenase subunit B [Chlorobium phaeobacteroides DSM 266] Length = 189 Score = 219 bits (559), Expect = 1e-55, Method: Composition-based stats. Identities = 88/147 (59%), Positives = 112/147 (76%), Gaps = 1/147 (0%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 IT L+TSVD ++ WAR SL M FGLACCA+EMM + YDLERFG PR+SPRQ Sbjct: 8 ITKHNVLITSVDNVLNWARLSSLWPMGFGLACCAIEMMATNASNYDLERFGIFPRSSPRQ 67 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVP 151 SD+M+VAGT++ KMA + R+Y+QMPEPRYV+SMGSC+N GG Y Y V++G DRI+P Sbjct: 68 SDLMLVAGTVSMKMAERVVRLYEQMPEPRYVLSMGSCSNCGGPYWEHGYHVLKGVDRIIP 127 Query: 152 VDIYVPGCPPTAEALIYGILLLQKKIR 178 VD+YVPGCPP E+LI G++ +Q+ IR Sbjct: 128 VDVYVPGCPPRPESLIGGLMKVQELIR 154 >gi|113200912|gb|ABI32428.1| NADH-plastoquinone oxidoreductase subunit K [Daucus carota] Length = 283 Score = 219 bits (559), Expect = 1e-55, Method: Composition-based stats. Identities = 70/154 (45%), Positives = 102/154 (66%), Gaps = 1/154 (0%) Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87 + T + T+ + L W+R SL + +G +CC +E R+D +R+G PR Sbjct: 65 PLLDRTTQNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 124 Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146 +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG Sbjct: 125 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTISGGMFSTDSYSTVRGV 184 Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 D+++PVD+Y+PGCPP EA+I I L+KKI R Sbjct: 185 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 218 >gi|156598694|gb|ABU85602.1| NADH-plastoquinone oxidoreductase subunit K [Scaevola aemula] Length = 222 Score = 219 bits (558), Expect = 1e-55, Method: Composition-based stats. Identities = 69/148 (46%), Positives = 101/148 (68%), Gaps = 1/148 (0%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93 T + T+++ L W+R SL + +G +CC +E R+D +R+G PR+SPRQ+ Sbjct: 10 TQNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 69 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGCDRIVPV 152 D+++ AGT+T KM +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++PV Sbjct: 70 DLILTAGTVTMKMGPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 129 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRV 180 D+Y+PGCPP EA+I I L+KKI R Sbjct: 130 DVYLPGCPPKPEAVIDAITKLRKKISRE 157 >gi|147669451|ref|YP_001214269.1| NADH-quinone oxidoreductase, B subunit [Dehalococcoides sp. BAV1] gi|238055291|sp|A5FQY4|NUOB_DEHSB RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|146270399|gb|ABQ17391.1| NADH dehydrogenase subunit B [Dehalococcoides sp. BAV1] Length = 200 Score = 219 bits (558), Expect = 1e-55, Method: Composition-based stats. Identities = 83/177 (46%), Positives = 116/177 (65%), Gaps = 1/177 (0%) Query: 9 KIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVE 68 +I + ++ E G +TSV++++ W+R SL + FGLACCA+E Sbjct: 23 GVIQSFRTGHTSPYPDPADWLNGEEPPPGVFITSVEKVLNWSRHYSLWPVMFGLACCAIE 82 Query: 69 MMQASMPRYDLERFGF-APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMG 127 MM + R+DL RFG RASPRQ+D+MIVAGTLT KMA L+R+YDQMPEP++V++MG Sbjct: 83 MMCMAASRWDLARFGMDIFRASPRQADLMIVAGTLTWKMAPWLKRIYDQMPEPKWVLAMG 142 Query: 128 SCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 +C GG + SYSVV G + +VPVD+YVPGCPP EAL+ I+ + +KI + +K Sbjct: 143 ACGTSGGLFRDSYSVVPGFNLVVPVDVYVPGCPPRPEALMRAIMDIHEKIDKTCILK 199 >gi|260076121|gb|ACX30998.1| NADH dehydrogenase subunit 10 [Moneuplotes crassus] Length = 163 Score = 219 bits (558), Expect = 1e-55, Method: Composition-based stats. Identities = 96/140 (68%), Positives = 121/140 (86%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 +LVT + ++ W+R GS+ +TFGLACCAVEMM ++M RYDL+RFG RASPR SD++I Sbjct: 5 WLVTKLQIMINWSRAGSIWPLTFGLACCAVEMMHSAMSRYDLDRFGTIFRASPRHSDLII 64 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 +AGTLTNKMA LRR+++QM EP++++SMGSCANGGGYYHYSY+VVRG DRIVPVD+YVP Sbjct: 65 IAGTLTNKMAPTLRRLFEQMQEPKFILSMGSCANGGGYYHYSYAVVRGADRIVPVDMYVP 124 Query: 158 GCPPTAEALIYGILLLQKKI 177 GCPPTAEALI+G+L LQ K+ Sbjct: 125 GCPPTAEALIFGLLQLQGKV 144 >gi|20068335|emb|CAC88048.1| NADH dehydrogenase 32kD subunit [Atropa belladonna] Length = 284 Score = 219 bits (558), Expect = 1e-55, Method: Composition-based stats. Identities = 69/160 (43%), Positives = 105/160 (65%), Gaps = 1/160 (0%) Query: 22 VDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLER 81 +++ + + T+++ L W+R SL + +G +CC +E R+D +R Sbjct: 60 MNSIQFPLLDRTAQNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDR 119 Query: 82 FGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSY 140 +G PR+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SY Sbjct: 120 YGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSY 179 Query: 141 SVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 S VRG D+++PVD+Y+PGCPP EA+I I L+KKI R Sbjct: 180 STVRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 219 >gi|91701654|gb|ABE47538.1| NADH-plastoquinone oxidoreductase subunit K [Vitis vinifera] gi|147769052|emb|CAN63542.1| hypothetical protein VITISV_025533 [Vitis vinifera] Length = 283 Score = 219 bits (558), Expect = 1e-55, Method: Composition-based stats. Identities = 73/181 (40%), Positives = 110/181 (60%), Gaps = 1/181 (0%) Query: 1 MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTF 60 M L G+ + +++ + T + T+ + L W+R SL + + Sbjct: 38 MVLAPEYSDNKKGKKNNIETVMNSIEFPLLDRTTQNSVISTTSNDLSNWSRLSSLWPLLY 97 Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 G +CC +E R+D +R+G PR+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP Sbjct: 98 GTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEP 157 Query: 121 RYVISMGSCANGGGYYH-YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179 +YVI+MG+C GG + SYS VRG D+++PVD+Y+PGCPP EA+I I L+KKI R Sbjct: 158 KYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKKISR 217 Query: 180 V 180 Sbjct: 218 E 218 >gi|317121592|ref|YP_004101595.1| NADH-quinone oxidoreductase subunit beta [Thermaerobacter marianensis DSM 12885] gi|315591572|gb|ADU50868.1| NADH-quinone oxidoreductase, B subunit [Thermaerobacter marianensis DSM 12885] Length = 350 Score = 219 bits (558), Expect = 1e-55, Method: Composition-based stats. Identities = 80/145 (55%), Positives = 108/145 (74%) Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVM 96 G L T + +LV W R S+ ++ FGLACCA+EMM A R DL+R G RASPRQ+D+M Sbjct: 201 GILTTRLQELVNWGRANSMWYLLFGLACCAIEMMAAGGTRTDLDRIGSVFRASPRQADLM 260 Query: 97 IVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV 156 IV+GT+T KMA ++ +YDQM EP++V+SMG+CA GG Y+ Y+VV G D+I+PVD+YV Sbjct: 261 IVSGTVTEKMAPVVKTLYDQMAEPKFVVSMGACATNGGPYYQGYNVVDGVDKIIPVDVYV 320 Query: 157 PGCPPTAEALIYGILLLQKKIRRVG 181 GCPP EAL++ IL LQ K+R++G Sbjct: 321 AGCPPRPEALVHAILKLQDKVRKIG 345 >gi|111074959|gb|ABH04821.1| NAD(P)H-quinone oxidoreductase 20 kDa subunit [Heliobacillus mobilis] Length = 175 Score = 219 bits (558), Expect = 1e-55, Method: Composition-based stats. Identities = 77/154 (50%), Positives = 112/154 (72%), Gaps = 1/154 (0%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89 E+ K ++TS++ + WAR S ++ GLACCA+EMM ++ PR+D+ RFG+ R S Sbjct: 16 QELVQKNIIMTSLESVFNWARGNSFWPLSSGLACCAIEMMASAGPRFDIARFGYEVFRPS 75 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 RQ+D +I+AGT+T KMA AL R+Y+QMPEP+++++MGSCA GG + SY+VV G D+I Sbjct: 76 VRQADCIIIAGTVTWKMAPALVRLYEQMPEPKWILAMGSCACTGGPFVDSYAVVPGVDKI 135 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 +PVD+Y+PGCPP EALI G L L++K++ V Sbjct: 136 LPVDVYIPGCPPRPEALIDGFLKLKEKVQNPTKV 169 >gi|87300572|ref|ZP_01083414.1| NADH dehydrogenase beta subunit [Synechococcus sp. WH 5701] gi|87284443|gb|EAQ76395.1| NADH dehydrogenase beta subunit [Synechococcus sp. WH 5701] Length = 253 Score = 219 bits (558), Expect = 1e-55, Method: Composition-based stats. Identities = 75/183 (40%), Positives = 112/183 (61%), Gaps = 6/183 (3%) Query: 1 MGLTTVNQKIISGQSSCSLEKVDADF-----SRISSEITHKGFLVTSVDQLVTWARTGSL 55 M +T + S +L + A + + + ++TS+D L WAR SL Sbjct: 1 MTITPSSPGTSEAPSIEALRDLRASTCNPVGAPTVTSDLSENVILTSLDDLHNWARLSSL 60 Query: 56 MWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYD 115 + +G ACC +E R+D +RFG PR+SPRQ+D++I AGT+T KMA AL R+Y+ Sbjct: 61 WPLLYGTACCFIEFAALIGSRFDFDRFGLVPRSSPRQADLLITAGTVTMKMAPALVRLYE 120 Query: 116 QMPEPRYVISMGSCANGGGYYH-YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQ 174 QMPEP+YVI+MG+C GG + S + VRG D+++PVD+Y+PGCPP EA+ ++ L+ Sbjct: 121 QMPEPKYVIAMGACTITGGMFSADSTTAVRGVDKLIPVDLYIPGCPPRPEAIFDAVIKLR 180 Query: 175 KKI 177 KK+ Sbjct: 181 KKV 183 >gi|154795237|ref|YP_740654.2| NADH-plastoquinone oxidoreductase subunit K [Nandina domestica] gi|218527960|sp|Q09FV7|NDHK_NANDO RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K Length = 225 Score = 219 bits (558), Expect = 1e-55, Method: Composition-based stats. Identities = 70/154 (45%), Positives = 103/154 (66%), Gaps = 1/154 (0%) Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87 + IT + T+ + L W+R SL + +G +CC +E R+D +R+G PR Sbjct: 7 PLLDRITQNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66 Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146 +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG Sbjct: 67 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126 Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 D+++PVD+Y+PGCPP EA+I I L+KK+ R Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKVSRE 160 >gi|325093407|gb|EGC46717.1| NADH-ubiquinone oxidoreductase [Ajellomyces capsulatus H88] Length = 240 Score = 219 bits (558), Expect = 1e-55, Method: Composition-based stats. Identities = 97/173 (56%), Positives = 124/173 (71%), Gaps = 2/173 (1%) Query: 4 TTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLA 63 T + + +E+ + + G + +D + WAR GSL ++ GLA Sbjct: 56 ITARENTANVPDVARIERNASLLPSQDEKTGAMGHFL--IDAVTNWARQGSLWPVSLGLA 113 Query: 64 CCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYV 123 CC VEMM SMPRYD +R G RASPRQSD++IVAGT+TNKMA ALR VYDQMP+P++V Sbjct: 114 CCGVEMMAVSMPRYDQDRLGTIFRASPRQSDLLIVAGTVTNKMAPALRLVYDQMPDPKWV 173 Query: 124 ISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKK 176 ISMGSCANGGGYYHYSYSVVRG DR++PVD+++PGCPPTAEAL+Y + +L+KK Sbjct: 174 ISMGSCANGGGYYHYSYSVVRGVDRLLPVDLFLPGCPPTAEALLYAMAVLRKK 226 >gi|307637933|gb|ADN80383.1| NADH-ubiquinone oxidoreductase chain B [Helicobacter pylori 908] Length = 159 Score = 219 bits (558), Expect = 1e-55, Method: Composition-based stats. Identities = 84/147 (57%), Positives = 112/147 (76%), Gaps = 1/147 (0%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 +++++D+L+ W R+ SL +T+GLA CA+EMM R+D +RFG RASPRQSDVMI Sbjct: 6 VILSTLDKLLNWGRSNSLWPLTYGLAWCAIEMMATGGSRFDFDRFGTIFRASPRQSDVMI 65 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 +AGTLT K A +RR+YDQMPEP++VISMGSCAN GG ++ +Y+ V+G DRIVPVDIY+P Sbjct: 66 IAGTLTKKHAEFMRRLYDQMPEPKWVISMGSCANTGGMFN-TYATVQGADRIVPVDIYLP 124 Query: 158 GCPPTAEALIYGILLLQKKIRRVGNVK 184 GC P E L Y +++LQ KIRR +K Sbjct: 125 GCAPRPETLQYALMVLQDKIRRSKAIK 151 >gi|167764930|ref|ZP_02437051.1| hypothetical protein BACSTE_03322 [Bacteroides stercoris ATCC 43183] gi|167697599|gb|EDS14178.1| hypothetical protein BACSTE_03322 [Bacteroides stercoris ATCC 43183] Length = 195 Score = 219 bits (558), Expect = 1e-55, Method: Composition-based stats. Identities = 73/160 (45%), Positives = 106/160 (66%), Gaps = 3/160 (1%) Query: 22 VDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDL 79 + ++ E+ G + +D + W R+ SL +TF +CC +E M RYD+ Sbjct: 19 DNETLEKLVRELNAGGANVAIGVLDDFIDWGRSNSLWPLTFATSCCGIEFMALGAARYDM 78 Query: 80 ERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY 138 RFGF RASPRQ+D+++V GT+TNKMA L+R+YDQM +P+YVI++G CA GG + Sbjct: 79 ARFGFEVARASPRQADMIMVCGTITNKMAPVLKRLYDQMADPKYVIAVGGCAVSGGPFKK 138 Query: 139 SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 SY VV G D+I+PVD+Y+PGCPP EA YG++ LQ+K++ Sbjct: 139 SYHVVNGVDKILPVDVYIPGCPPRPEAFYYGMMQLQRKVK 178 >gi|94969279|ref|YP_591327.1| NADH dehydrogenase subunit B [Candidatus Koribacter versatilis Ellin345] gi|238065004|sp|Q1IPE7|NUOB1_ACIBL RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName: Full=NADH dehydrogenase I subunit B 1; AltName: Full=NDH-1 subunit B 1 gi|94551329|gb|ABF41253.1| NADH dehydrogenase subunit B [Candidatus Koribacter versatilis Ellin345] Length = 213 Score = 219 bits (558), Expect = 2e-55, Method: Composition-based stats. Identities = 79/149 (53%), Positives = 107/149 (71%), Gaps = 2/149 (1%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89 E +G ++T++D V W R S+ MTFGLACCA+EMM R+D+ RFG R S Sbjct: 49 GEQPEEGIVLTTLDNAVNWIRKNSIWPMTFGLACCAIEMMSMGASRFDIARFGAEVFRPS 108 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQSD+MI+AG ++ KMA +R +Y QMPEP++VISMG+CA GG ++ Y++V+G ++ Sbjct: 109 PRQSDLMIIAGRVSQKMAPVIRHLYLQMPEPKWVISMGACATSGGVFNN-YALVQGVNQY 167 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIR 178 +PVDIYVPGCPP E LIY I LLQ+KI+ Sbjct: 168 IPVDIYVPGCPPRPEQLIYAITLLQEKIQ 196 >gi|154795252|ref|YP_001294356.2| NADH dehydrogenase subunit K [Dioscorea elephantipes] gi|218527899|sp|A6MML1|NDHK_DIOEL RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K Length = 225 Score = 219 bits (558), Expect = 2e-55, Method: Composition-based stats. Identities = 69/153 (45%), Positives = 102/153 (66%), Gaps = 1/153 (0%) Query: 29 ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88 + + T + T+ + L W+R SL + +G +CC +E R+D +R+G PR+ Sbjct: 8 LLDQTTPNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRS 67 Query: 89 SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGCD 147 SPRQ+D+++ AGT+T KMA +L R+Y+QM EP+YVI+MG+C GG + SYS VRG D Sbjct: 68 SPRQADLILTAGTVTMKMAPSLVRLYEQMAEPKYVIAMGACTITGGMFSTDSYSTVRGVD 127 Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 +++PVD+Y+PGCPP EA+I I L+KKI R Sbjct: 128 KLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 160 >gi|148668050|gb|ABR01434.1| NADH-plastoquinone oxidoreductase subunit K [Dioscorea elephantipes] Length = 247 Score = 219 bits (558), Expect = 2e-55, Method: Composition-based stats. Identities = 69/153 (45%), Positives = 102/153 (66%), Gaps = 1/153 (0%) Query: 29 ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88 + + T + T+ + L W+R SL + +G +CC +E R+D +R+G PR+ Sbjct: 30 LLDQTTPNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRS 89 Query: 89 SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGCD 147 SPRQ+D+++ AGT+T KMA +L R+Y+QM EP+YVI+MG+C GG + SYS VRG D Sbjct: 90 SPRQADLILTAGTVTMKMAPSLVRLYEQMAEPKYVIAMGACTITGGMFSTDSYSTVRGVD 149 Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 +++PVD+Y+PGCPP EA+I I L+KKI R Sbjct: 150 KLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 182 >gi|113200998|gb|ABI32513.1| NADH-plastoquinone oxidoreductase subunit K [Liriodendron tulipifera] Length = 285 Score = 219 bits (558), Expect = 2e-55, Method: Composition-based stats. Identities = 73/177 (41%), Positives = 109/177 (61%), Gaps = 2/177 (1%) Query: 5 TVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLAC 64 + NQ G+ +F + T + T+ + L W+R SL + +G +C Sbjct: 45 SDNQNQKEGKDYIETVMNSIEFPLL-DRTTQNSVISTTSNDLSNWSRLSSLWPLLYGTSC 103 Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E R+D +R+G PR+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI Sbjct: 104 CFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVI 163 Query: 125 SMGSCANGGGYYH-YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 +MG+C GG + SYS VRG D+++PVD+Y+PGCPP EA+I I L+KK+ R Sbjct: 164 AMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKKVSRE 220 >gi|156598201|gb|ABU85364.1| NADH-plastoquinone oxidoreductase subunit K [Elaeis oleifera] Length = 287 Score = 219 bits (558), Expect = 2e-55, Method: Composition-based stats. Identities = 69/154 (44%), Positives = 104/154 (67%), Gaps = 1/154 (0%) Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87 + + T + T+ + L W+R SL + +G +CC +E R+D +R+G P+ Sbjct: 66 PLLDQTTPNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPK 125 Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146 +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG Sbjct: 126 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 185 Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 D+++PVD+Y+PGCPP EA+I I+ L+KKI R Sbjct: 186 DKLIPVDVYLPGCPPKPEAVIDAIMKLRKKISRE 219 >gi|122211719|sp|Q32RI3|NDHK_ZYGCR RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K gi|61393680|gb|AAX45822.1| 27 kDa subunit of NADH-ubiquinone oxidoreductase [Zygnema circumcarinatum] Length = 255 Score = 219 bits (558), Expect = 2e-55, Method: Composition-based stats. Identities = 66/153 (43%), Positives = 104/153 (67%), Gaps = 1/153 (0%) Query: 30 SSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS 89 + + + ++T++ + W R SL + +G +CC +E R+D +R+G PR+S Sbjct: 13 TKQNVYDSVVLTTLQDVSNWVRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSS 72 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGCDR 148 PRQ+D++I AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+ Sbjct: 73 PRQADLIITAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDK 132 Query: 149 IVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181 ++PVD+Y+PGCPP EA++ I+ L+KK+ + Sbjct: 133 LIPVDVYLPGCPPKPEAIVDAIIKLRKKVAQEN 165 >gi|139389954|ref|YP_001123554.1| photosystem II G protein [Draba nemorosa] gi|218527888|sp|A4QL23|NDHK_DRANE RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K gi|134286756|dbj|BAF50378.1| photosystem II G protein [Draba nemorosa] Length = 225 Score = 219 bits (557), Expect = 2e-55, Method: Composition-based stats. Identities = 70/154 (45%), Positives = 102/154 (66%), Gaps = 1/154 (0%) Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87 + T + T+++ L W+R SL +G +CC +E R+D +R+G PR Sbjct: 7 PVLDRTTKNSVISTTLNDLSNWSRLSSLWPFLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66 Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146 +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG Sbjct: 67 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126 Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 D+++PVD+Y+PGCPP EA+I I L+KKI R Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKIARE 160 >gi|110456747|gb|ABG74842.1| NADH dehydrogenase 32 kDa subunit [Menodora longiflora] Length = 213 Score = 219 bits (557), Expect = 2e-55, Method: Composition-based stats. Identities = 69/154 (44%), Positives = 102/154 (66%), Gaps = 1/154 (0%) Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87 + + T+++ L W+R SL + +G +CC +E R+D +R+G PR Sbjct: 7 PLLDQRVQNSVFSTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66 Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146 +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG Sbjct: 67 SSPRQADLILTAGTVTMKMAPSLMRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126 Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 D+++PVD+Y+PGCPP EA+I I L+KKI R Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRA 160 >gi|290489730|gb|ADD31249.1| NADH-plastoquinone oxidoreductase subunit K protein [Euonymus americanus] Length = 228 Score = 219 bits (557), Expect = 2e-55, Method: Composition-based stats. Identities = 70/154 (45%), Positives = 102/154 (66%), Gaps = 1/154 (0%) Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87 + T + T+ + L W+R SL + +G +CC +E R+D +R+G PR Sbjct: 7 PLLDRTTQNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66 Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146 +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG Sbjct: 67 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTESYSTVRGV 126 Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 D+++PVD+Y+PGCPP EA+I I L+KKI R Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 160 >gi|290489710|gb|ADD31239.1| NADH-plastoquinone oxidoreductase subunit K protein [Ehretia acuminata] Length = 284 Score = 219 bits (557), Expect = 2e-55, Method: Composition-based stats. Identities = 70/154 (45%), Positives = 103/154 (66%), Gaps = 1/154 (0%) Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87 + T + T+++ L W+R SL + +G +CC +E R+D +R+G PR Sbjct: 66 PLLDRTTPNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 125 Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146 +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG Sbjct: 126 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 185 Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 D+++PVD+Y+PGCPP EA+I I L+KKI R Sbjct: 186 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 219 >gi|322417697|ref|YP_004196920.1| NADH dehydrogenase I subunit D [Geobacter sp. M18] gi|320124084|gb|ADW11644.1| NADH dehydrogenase I, D subunit [Geobacter sp. M18] Length = 794 Score = 219 bits (557), Expect = 2e-55, Method: Composition-based stats. Identities = 81/154 (52%), Positives = 110/154 (71%), Gaps = 2/154 (1%) Query: 26 FSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA 85 S E + L+TS+D L+ W R SL M FGL+CC VEMM + RYD+ RFG Sbjct: 1 MSERDDEKIPENVLLTSLDDLINWGRANSLWPMFFGLSCCFVEMMTSFTSRYDVSRFGAE 60 Query: 86 P-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR 144 R +PR+SD+M++AGT+ KMA ++ R+Y+QM EP++VISMGSCAN GG Y YSVV+ Sbjct: 61 VLRGTPRESDLMVIAGTVFKKMAPSILRLYEQMAEPKWVISMGSCANSGGMY-DVYSVVQ 119 Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 G ++I+PVD+Y+PGCPP E+ + G++LLQKKIR Sbjct: 120 GVNQILPVDLYIPGCPPRPESFLEGLMLLQKKIR 153 >gi|291298799|ref|YP_003510077.1| NADH-quinone oxidoreductase subunit B [Stackebrandtia nassauensis DSM 44728] gi|290568019|gb|ADD40984.1| NADH-quinone oxidoreductase, B subunit [Stackebrandtia nassauensis DSM 44728] Length = 216 Score = 219 bits (557), Expect = 2e-55, Method: Composition-based stats. Identities = 81/148 (54%), Positives = 103/148 (69%), Gaps = 2/148 (1%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89 E G L+TSV++LV W R S TFGLACCA+EMM RYD RFG RAS Sbjct: 4 EEKLPSGILLTSVEKLVNWTRKASFWPATFGLACCAIEMMATGAARYDTARFGMEVFRAS 63 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQ+D+MIVAG ++ KMA LR++YDQM EP++V+SMG CA+ GG ++ Y++V+G D + Sbjct: 64 PRQADLMIVAGRVSQKMAPVLRQIYDQMSEPKWVLSMGVCASSGGMFNN-YAIVQGVDHV 122 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKI 177 VPVDIY+PGCPP E L+ IL L KI Sbjct: 123 VPVDIYLPGCPPRPEMLLDAILKLHDKI 150 >gi|290489728|gb|ADD31248.1| NADH-plastoquinone oxidoreductase subunit K protein [Cornus florida] Length = 252 Score = 219 bits (557), Expect = 2e-55, Method: Composition-based stats. Identities = 73/181 (40%), Positives = 110/181 (60%), Gaps = 2/181 (1%) Query: 1 MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTF 60 M L +++ + DF + T + T+ + L W+R SL + + Sbjct: 8 MVLAPEYSDNKKKKNTIEMVMNSIDFPLL-DRTTPNSVISTTSNDLSNWSRLSSLWPLLY 66 Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 G +CC +E R+D +R+G PR+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP Sbjct: 67 GTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEP 126 Query: 121 RYVISMGSCANGGGYYH-YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179 +YVI+MG+C GG + SYS VRG D+++PVD+Y+PGCPP EA+I I L+KKI + Sbjct: 127 KYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKKISQ 186 Query: 180 V 180 Sbjct: 187 E 187 >gi|112032666|gb|ABH88301.1| NADH-plastoquinone oxidoreductase subunit K [Drimys granadensis] Length = 287 Score = 219 bits (557), Expect = 2e-55, Method: Composition-based stats. Identities = 69/154 (44%), Positives = 102/154 (66%), Gaps = 1/154 (0%) Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87 + T + T+ + L W+R SL + +G +CC +E R+D +R+G PR Sbjct: 67 PLLDRTTQNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 126 Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146 +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG Sbjct: 127 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 186 Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 D+++PVD+Y+PGCPP EA+I I L+KK+ R Sbjct: 187 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKVSRE 220 >gi|300869242|ref|ZP_07113836.1| NAD(P)H-quinone oxidoreductase subunit K [Oscillatoria sp. PCC 6506] gi|300332787|emb|CBN59034.1| NAD(P)H-quinone oxidoreductase subunit K [Oscillatoria sp. PCC 6506] Length = 240 Score = 219 bits (557), Expect = 2e-55, Method: Composition-based stats. Identities = 74/169 (43%), Positives = 111/169 (65%), Gaps = 2/169 (1%) Query: 10 IISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEM 69 ++S + + + I+S+++ ++T+VD L WAR SL + +G ACC +E Sbjct: 2 VLSSDTQKTQLINPVERPEITSQLSE-NVILTTVDDLYNWARLSSLWPLLYGTACCFIEF 60 Query: 70 MQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSC 129 R+D +RFG PR+SPRQ+D++I AGT+T K A L R+Y+QMPEP+YVI+MG+C Sbjct: 61 AALIGSRFDFDRFGLVPRSSPRQADLIITAGTITMKYAPILVRLYEQMPEPKYVIAMGAC 120 Query: 130 ANGGGYYH-YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 GG + S + VRG D+++PVD+Y+PGCPP EA+I I+ L+KKI Sbjct: 121 TITGGMFSMDSPTAVRGVDKLIPVDVYIPGCPPRPEAIIDAIIKLRKKI 169 >gi|313681394|ref|YP_004059132.1| NADH dehydrogenase subunit b [Sulfuricurvum kujiense DSM 16994] gi|313154254|gb|ADR32932.1| NADH dehydrogenase subunit B [Sulfuricurvum kujiense DSM 16994] Length = 169 Score = 219 bits (557), Expect = 2e-55, Method: Composition-based stats. Identities = 80/147 (54%), Positives = 111/147 (75%), Gaps = 1/147 (0%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 +T++D++V W R+ SL +T+GLACC +EMM + RYD +RFG RASPRQ+++M+ Sbjct: 16 VALTTIDKVVNWGRSNSLWALTYGLACCGIEMMASGASRYDFDRFGTIFRASPRQAELMV 75 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGTLT K A +RR+YDQM EP++VISMGSCAN GG ++ +Y+ V+G DR++PVD+Y+P Sbjct: 76 VAGTLTKKHAEFIRRLYDQMTEPKWVISMGSCANTGGMFN-TYATVQGVDRVIPVDLYLP 134 Query: 158 GCPPTAEALIYGILLLQKKIRRVGNVK 184 GC P E L Y +LLLQ+KIRR + Sbjct: 135 GCAPRPETLQYAVLLLQQKIRRESASR 161 >gi|254415153|ref|ZP_05028915.1| NADH-quinone oxidoreductase, B subunit subfamily, putative [Microcoleus chthonoplastes PCC 7420] gi|196177959|gb|EDX72961.1| NADH-quinone oxidoreductase, B subunit subfamily, putative [Microcoleus chthonoplastes PCC 7420] Length = 247 Score = 219 bits (557), Expect = 2e-55, Method: Composition-based stats. Identities = 75/175 (42%), Positives = 110/175 (62%), Gaps = 2/175 (1%) Query: 5 TVNQKIISGQSSCSLEKVDADFSRIS-SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLA 63 + + Q EK+ SR ++ + ++T+VD L WAR SL M +G A Sbjct: 2 NTDTANAASQQQQPKEKIINPISRPQVTQNLSENVILTTVDDLYNWARLSSLWPMMYGTA 61 Query: 64 CCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYV 123 CC +E R+D +RFG PR SPRQ+D++I AGT+T KM AL R+Y+QMPEP+YV Sbjct: 62 CCFIEFAAMIGSRFDFDRFGLVPRCSPRQADLIITAGTITMKMTPALVRLYEQMPEPKYV 121 Query: 124 ISMGSCANGGGYYH-YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 ++MG+C GG + S + VRG D+++PVD+Y+PGCPP EA++ I+ L+KK+ Sbjct: 122 MAMGACTITGGMFSVDSPTAVRGVDKLIPVDVYIPGCPPRPEAIMDAIVKLRKKV 176 >gi|139388914|ref|YP_001123641.1| NADH dehydrogenase subunit K [Lepidium virginicum] gi|218527910|sp|A4QLB0|NDHK_LEPVR RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K gi|134286844|dbj|BAF50465.1| photosystem II G protein [Lepidium virginicum] Length = 225 Score = 219 bits (557), Expect = 2e-55, Method: Composition-based stats. Identities = 70/154 (45%), Positives = 103/154 (66%), Gaps = 1/154 (0%) Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87 + T + T+++ L W+R SL + +G +CC +E R+D +R+G PR Sbjct: 7 PVLDRTTTNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66 Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146 +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG Sbjct: 67 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126 Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 D+++PVD+Y+PGCPP EA+I I L+KKI R Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKIARE 160 >gi|139387256|ref|YP_001123377.1| NADH dehydrogenase subunit K [Capsella bursa-pastoris] gi|218527884|sp|A4QKJ6|NDHK_CAPBU RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K gi|134286577|dbj|BAF50201.1| photosystem II G protein [Capsella bursa-pastoris] Length = 225 Score = 219 bits (557), Expect = 2e-55, Method: Composition-based stats. Identities = 70/154 (45%), Positives = 102/154 (66%), Gaps = 1/154 (0%) Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87 + T + T+++ L W R SL + +G +CC +E R+D +R+G PR Sbjct: 7 PVLDRTTKNSVISTTLNDLSNWTRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66 Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146 +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG Sbjct: 67 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126 Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 D+++PVD+Y+PGCPP EA+I I L+KKI R Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKIARE 160 >gi|317046177|ref|YP_004072466.1| NADH dehydrogenase 32 kDa subunit [Corynocarpus laevigata] gi|309252894|gb|ADO60314.1| NADH dehydrogenase 32 kDa subunit [Corynocarpus laevigata] Length = 226 Score = 219 bits (557), Expect = 2e-55, Method: Composition-based stats. Identities = 70/154 (45%), Positives = 102/154 (66%), Gaps = 1/154 (0%) Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87 + T + T+ + L W+R SL + +G +CC +E R+D +R+G PR Sbjct: 7 PLLDRTTQTSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66 Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146 +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG Sbjct: 67 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126 Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 D+++PVD+Y+PGCPP EA+I I L+KKI R Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 160 >gi|225563447|gb|EEH11726.1| NADH-ubiquinone oxidoreductase [Ajellomyces capsulatus G186AR] Length = 240 Score = 219 bits (557), Expect = 2e-55, Method: Composition-based stats. Identities = 97/173 (56%), Positives = 124/173 (71%), Gaps = 2/173 (1%) Query: 4 TTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLA 63 T + + +E+ + + G + +D + WAR GSL ++ GLA Sbjct: 56 ITPRENTANVPDVARIEQNASLLPSQDEKTGAMGHFL--IDAVTNWARQGSLWPVSLGLA 113 Query: 64 CCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYV 123 CC VEMM SMPRYD +R G RASPRQSD++IVAGT+TNKMA ALR VYDQMP+P++V Sbjct: 114 CCGVEMMAVSMPRYDQDRLGTIFRASPRQSDLLIVAGTVTNKMAPALRLVYDQMPDPKWV 173 Query: 124 ISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKK 176 ISMGSCANGGGYYHYSYSVVRG DR++PVD+++PGCPPTAEAL+Y + +L+KK Sbjct: 174 ISMGSCANGGGYYHYSYSVVRGVDRLLPVDLFLPGCPPTAEALLYAMAVLRKK 226 >gi|78221378|ref|YP_383125.1| trifunctional NADH dehydrogenase I subunit B/C/D [Geobacter metallireducens GS-15] gi|123572941|sp|Q39ZC4|NUBCD_GEOMG RecName: Full=NADH-quinone oxidoreductase subunit B/C/D; AltName: Full=NADH dehydrogenase I subunit B/C/D; AltName: Full=NDH-1 subunit B/C/D gi|78192633|gb|ABB30400.1| NADH dehydrogenase subunit D / NADH dehydrogenase subunit C / NADH dehydrogenase subunit B [Geobacter metallireducens GS-15] Length = 791 Score = 219 bits (557), Expect = 2e-55, Method: Composition-based stats. Identities = 77/154 (50%), Positives = 109/154 (70%), Gaps = 2/154 (1%) Query: 29 ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-R 87 + + ++T +D L+ W R SL M FGL+CC VEMM + RYD+ RFG R Sbjct: 1 MEETEIPQNIVLTRLDDLINWGRANSLWPMFFGLSCCFVEMMTSFTSRYDISRFGAEVLR 60 Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCD 147 +PR++D+M++AGT+ KMA ++ R+Y+QM EP++VISMGSCAN GG Y YSVV+G + Sbjct: 61 GTPREADLMVIAGTVFKKMAPSILRLYEQMAEPKWVISMGSCANSGGMY-DVYSVVQGVN 119 Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181 +I+PVD++VPGCPP EA + G++LLQ+KIRR Sbjct: 120 QIIPVDVHVPGCPPRPEAFLQGVMLLQEKIRREE 153 >gi|152993807|ref|YP_001359528.1| NADH dehydrogenase subunit B [Sulfurovum sp. NBC37-1] gi|238065218|sp|A6QCG2|NUOB_SULNB RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|151425668|dbj|BAF73171.1| NADH-quinone oxidoreductase, chain B [Sulfurovum sp. NBC37-1] Length = 172 Score = 218 bits (556), Expect = 2e-55, Method: Composition-based stats. Identities = 84/143 (58%), Positives = 109/143 (76%), Gaps = 1/143 (0%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 +TSVD+LV W R+ SL +T+GLACCA+EMM + RYD +R G RASPRQ+DVMI Sbjct: 16 IALTSVDKLVNWGRSNSLWPLTYGLACCAIEMMASGASRYDFDRMGTIFRASPRQADVMI 75 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 +AGTL+ K + RR+YDQM EP++VISMGSCAN GG ++ +Y+ V+G DRI+PVDIY+P Sbjct: 76 LAGTLSKKHSEFARRLYDQMTEPKWVISMGSCANTGGMFN-TYATVQGVDRIIPVDIYLP 134 Query: 158 GCPPTAEALIYGILLLQKKIRRV 180 GC P E L Y +++LQKKIRR Sbjct: 135 GCAPRPETLQYALMMLQKKIRRE 157 >gi|154175216|ref|YP_001407461.1| NADH dehydrogenase subunit B [Campylobacter curvus 525.92] gi|254767791|sp|A7GW69|NUOB_CAMC5 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|112803227|gb|EAU00571.1| 50S ribosomal protein L10 [Campylobacter curvus 525.92] Length = 170 Score = 218 bits (556), Expect = 2e-55, Method: Composition-based stats. Identities = 86/147 (58%), Positives = 112/147 (76%), Gaps = 1/147 (0%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 ++T+VD+LV W R+ SL +++GLACCA+EMM + RYD +RFG RASPR S+VMI Sbjct: 16 IVLTTVDRLVQWGRSNSLWALSYGLACCAIEMMASGASRYDFDRFGTIFRASPRHSEVMI 75 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 +AGTLT K A RR+YDQMPEP++VISMGSCAN GG ++ +YS V+G DRI+PVDIY+P Sbjct: 76 IAGTLTKKHAEFTRRLYDQMPEPKWVISMGSCANTGGMFN-TYSTVQGVDRIIPVDIYLP 134 Query: 158 GCPPTAEALIYGILLLQKKIRRVGNVK 184 GC P E L Y +++LQKKIRR + Sbjct: 135 GCAPRPETLQYALMILQKKIRRQSAFR 161 >gi|78183815|ref|YP_376249.1| NADH dehydrogenase subunit B [Synechococcus sp. CC9902] gi|123582227|sp|Q3B0C2|NDHK_SYNS9 RecName: Full=NAD(P)H-quinone oxidoreductase subunit K; AltName: Full=NAD(P)H dehydrogenase I subunit K; AltName: Full=NDH-1 subunit K; Short=NDH-K gi|78168109|gb|ABB25206.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit [Synechococcus sp. CC9902] Length = 244 Score = 218 bits (556), Expect = 2e-55, Method: Composition-based stats. Identities = 72/153 (47%), Positives = 107/153 (69%), Gaps = 2/153 (1%) Query: 26 FSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA 85 +++E++ ++TS+D L WAR SL + +G ACC +E R+D +RFG Sbjct: 23 TPEVTNELSE-NIILTSLDDLHNWARLSSLWPLLYGTACCFIEFAALLGSRFDFDRFGLV 81 Query: 86 PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVR 144 PR+SPRQ+D++IVAGT+T KMA AL R+Y+QMPEP+YVI+MG+C GG + S + VR Sbjct: 82 PRSSPRQADLLIVAGTVTMKMAPALVRLYEQMPEPKYVIAMGACTITGGMFSADSTTAVR 141 Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 G D+++PVD+Y+PGCPP EA+ ++ L+KK+ Sbjct: 142 GVDKLIPVDLYLPGCPPRPEAIFDAVIKLRKKV 174 >gi|89280639|ref|YP_514856.1| NADH dehydrogenase subunit K [Solanum lycopersicum] gi|91208992|ref|YP_538852.1| NADH dehydrogenase subunit K [Solanum bulbocastanum] gi|108773134|ref|YP_635643.1| NADH dehydrogenase subunit K [Solanum tuberosum] gi|84371899|gb|ABC56217.1| NADH-plastoquinone oxidoreductase subunit K [Solanum bulbocastanum] gi|84371987|gb|ABC56304.1| NADH-plastoquinone oxidoreductase subunit K [Solanum lycopersicum] gi|88656808|gb|ABD47061.1| NADH-plastoquinone oxidoreductase subunit K [Solanum tuberosum] gi|89241675|emb|CAJ32397.1| NADH dehydrogenase subunit K [Solanum lycopersicum] Length = 284 Score = 218 bits (556), Expect = 2e-55, Method: Composition-based stats. Identities = 70/160 (43%), Positives = 105/160 (65%), Gaps = 1/160 (0%) Query: 22 VDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLER 81 +++ + + T+++ L W+R SL + +G +CC +E R+D +R Sbjct: 60 MNSIQFPLLDRTAPNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDR 119 Query: 82 FGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSY 140 +G PR+SPRQSD+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SY Sbjct: 120 YGLVPRSSPRQSDLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSY 179 Query: 141 SVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 S VRG D+++PVD+Y+PGCPP EA+I I L+KKI R Sbjct: 180 STVRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 219 >gi|242810530|ref|XP_002485599.1| NADH-plastoquinone oxidoreductase, putative [Talaromyces stipitatus ATCC 10500] gi|218716224|gb|EED15646.1| NADH-plastoquinone oxidoreductase, putative [Talaromyces stipitatus ATCC 10500] Length = 195 Score = 218 bits (556), Expect = 2e-55, Method: Composition-based stats. Identities = 96/176 (54%), Positives = 126/176 (71%), Gaps = 4/176 (2%) Query: 9 KIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVE 68 +++ ++ S+ + + G+++TSVDQ+V WAR SL ++F LACC +E Sbjct: 19 SLVTSPPELPVKVP----SQERKDSSAAGYVLTSVDQIVNWARQNSLWALSFVLACCTIE 74 Query: 69 MMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGS 128 MMQ SMP+YD +R G ASPRQ+DVM+VAGT+T+KMA ALR+ YDQM EPR++I+MGS Sbjct: 75 MMQVSMPQYDQDRLGIIFSASPRQADVMVVAGTVTSKMAPALRQCYDQMSEPRWLITMGS 134 Query: 129 CANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 CANGGGYYHY YSVVRG DRI+PVD+Y+PGC PT EA +YG LQ KIR + Sbjct: 135 CANGGGYYHYIYSVVRGVDRIIPVDVYIPGCSPTPEAFLYGTFQLQNKIRTTKVTR 190 >gi|327349174|gb|EGE78031.1| NADH-ubiquinone oxidoreductase 20 kDa subunit [Ajellomyces dermatitidis ATCC 18188] Length = 172 Score = 218 bits (556), Expect = 2e-55, Method: Composition-based stats. Identities = 94/159 (59%), Positives = 121/159 (76%) Query: 19 LEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78 +E+ + + G + S+D + W R SL ++ GLACC +EMM SMPRYD Sbjct: 1 MERSSSLLPSQDEKTGTMGHFLGSIDAVANWGRQASLWPISLGLACCGLEMMAVSMPRYD 60 Query: 79 LERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY 138 +R G RASPRQSD++IVAGT+TNKMA ALR VYDQMP+P++VISMGSCANGGGYYHY Sbjct: 61 QDRLGTIFRASPRQSDLLIVAGTVTNKMAPALRLVYDQMPDPKWVISMGSCANGGGYYHY 120 Query: 139 SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 SYSVVRG DR++PVD+Y+PGCPPTAEAL+Y I ++++K+ Sbjct: 121 SYSVVRGVDRLLPVDVYLPGCPPTAEALMYAISVVRRKL 159 >gi|126657571|ref|ZP_01728727.1| NADH dehydrogenase subunit B [Cyanothece sp. CCY0110] gi|126621275|gb|EAZ91988.1| NADH dehydrogenase subunit B [Cyanothece sp. CCY0110] Length = 247 Score = 218 bits (556), Expect = 2e-55, Method: Composition-based stats. Identities = 69/151 (45%), Positives = 103/151 (68%), Gaps = 1/151 (0%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP 90 ++ + ++T+VD L WAR SL + +G ACC +E R+D +RFG PR+SP Sbjct: 30 TQDLSENIILTTVDDLHNWARLSSLWPLLYGTACCFIEFAALIGSRFDFDRFGLVPRSSP 89 Query: 91 RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGCDRI 149 RQ+D++I AGT+T KMA AL R+Y++MP+P+YVI+MG+C GG + S + VRG D++ Sbjct: 90 RQADLIITAGTITMKMAPALVRLYEEMPDPKYVIAMGACTITGGMFSSDSTTAVRGVDKL 149 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 +PVD+Y+PGCPP EA+ I+ L+KK+ Sbjct: 150 IPVDVYIPGCPPRPEAIFDAIIKLRKKVSNE 180 >gi|197131364|gb|ACH47200.1| NADH-plastoquinone oxidoreductase subunit K [Pelargonium cotyledonis] Length = 227 Score = 218 bits (556), Expect = 3e-55, Method: Composition-based stats. Identities = 70/160 (43%), Positives = 105/160 (65%), Gaps = 1/160 (0%) Query: 22 VDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLER 81 +++ + T + T+ + L W+R SL + +G +CC +E R+D +R Sbjct: 1 MNSVEFPLLDRRTKNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDR 60 Query: 82 FGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSY 140 +G PR+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SY Sbjct: 61 YGLVPRSSPRQADLVLTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSY 120 Query: 141 SVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 S VRG D+++PVD+Y+PGCPP EA+I I L+KKI R Sbjct: 121 STVRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 160 >gi|290489708|gb|ADD31238.1| NADH-plastoquinone oxidoreductase subunit K protein [Dillenia indica] Length = 251 Score = 218 bits (556), Expect = 3e-55, Method: Composition-based stats. Identities = 69/156 (44%), Positives = 101/156 (64%), Gaps = 1/156 (0%) Query: 26 FSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA 85 R + + T+ + L W+R SL + +G +CC +E R+D +R+G Sbjct: 31 LDRTTQNSVISSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLV 90 Query: 86 PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVR 144 PR+SPRQ+D+++ AGT+T KMA +L R+Y+QM EP+YVI+MG+C GG + SYS VR Sbjct: 91 PRSSPRQADLILTAGTVTMKMAPSLVRLYEQMAEPKYVIAMGACTITGGMFSTDSYSTVR 150 Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 G D+++PVD+Y+PGCPP EA+I I L+KKI R Sbjct: 151 GVDKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 186 >gi|74381713|emb|CAI53798.1| photosystem II G protein [Acorus calamus] gi|156573647|gb|ABU85157.1| NADH-plastoquinone oxidoreductase subunit K [Acorus americanus] Length = 297 Score = 218 bits (556), Expect = 3e-55, Method: Composition-based stats. Identities = 69/154 (44%), Positives = 103/154 (66%), Gaps = 1/154 (0%) Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87 + T + T+++ L W+R SL + +G +CC +E R+D +R+G PR Sbjct: 65 PLLDRTTPNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 124 Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146 +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG Sbjct: 125 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 184 Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 D+++PVD+Y+PGCPP EA+I I L+KK+ R Sbjct: 185 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKLSRE 218 >gi|218527904|sp|A6MM40|NDHK_BUXMI RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K Length = 200 Score = 218 bits (556), Expect = 3e-55, Method: Composition-based stats. Identities = 69/154 (44%), Positives = 102/154 (66%), Gaps = 1/154 (0%) Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87 + T + T+ + L W+R SL + +G +CC +E R+D +R+G PR Sbjct: 7 PLVDRTTQNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66 Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146 +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG Sbjct: 67 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126 Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 D+++PVD+Y+PGCPP EA+I I L+KK+ R Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKVSRE 160 >gi|117927477|ref|YP_872028.1| NADH dehydrogenase subunit B [Acidothermus cellulolyticus 11B] gi|238065066|sp|A0LRI2|NUOB_ACIC1 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|117647940|gb|ABK52042.1| NADH dehydrogenase subunit B [Acidothermus cellulolyticus 11B] Length = 184 Score = 218 bits (556), Expect = 3e-55, Method: Composition-based stats. Identities = 81/152 (53%), Positives = 109/152 (71%), Gaps = 2/152 (1%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89 E GFL+T+V++ V W R SL TFGLACCA+EMM RYDL RFG RAS Sbjct: 4 EEKIPGGFLLTTVEKAVGWVRKSSLWPATFGLACCAIEMMATGAGRYDLARFGMEVFRAS 63 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQ+D+MIVAG ++ KMA LR++YDQMPEP++V++MG CA+ GG ++ Y++V+G D + Sbjct: 64 PRQADLMIVAGRVSQKMAPVLRQIYDQMPEPKWVLAMGVCASSGGMFNN-YAIVQGVDHV 122 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181 VPVD+Y+PGCPP E L++ IL L +KI+ Sbjct: 123 VPVDMYLPGCPPRPEMLMHAILELHEKIKSTK 154 >gi|290489736|gb|ADD31252.1| NADH-plastoquinone oxidoreductase subunit K protein [Heuchera sanguinea] Length = 255 Score = 218 bits (556), Expect = 3e-55, Method: Composition-based stats. Identities = 70/154 (45%), Positives = 102/154 (66%), Gaps = 1/154 (0%) Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87 + T + T+ + L W+R SL + +G +CC +E R+D +R+G PR Sbjct: 37 PLLDRTTQNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 96 Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146 +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG Sbjct: 97 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 156 Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 D+++PVD+Y+PGCPP EA+I I L+KKI R Sbjct: 157 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 190 >gi|159901492|ref|YP_001547739.1| NADH dehydrogenase subunit B [Herpetosiphon aurantiacus ATCC 23779] gi|238065032|sp|A9B478|NUOB2_HERA2 RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName: Full=NADH dehydrogenase I subunit B 2; AltName: Full=NDH-1 subunit B 2 gi|159894531|gb|ABX07611.1| NADH-quinone oxidoreductase, B subunit [Herpetosiphon aurantiacus ATCC 23779] Length = 250 Score = 218 bits (556), Expect = 3e-55, Method: Composition-based stats. Identities = 80/151 (52%), Positives = 109/151 (72%), Gaps = 1/151 (0%) Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-AP 86 + ++ +G L T++++L W R S+ M FGLACCA+EM+ A+ RYD+ RFG Sbjct: 5 QTQMDLEQQGVLFTTINKLYNWGRRSSVWPMQFGLACCAIEMIAAAASRYDISRFGSELF 64 Query: 87 RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGC 146 RASPRQ+DVMIVAGT+T KM + R+++QMPEPRYVISMG+CA GG + Y+VVRG Sbjct: 65 RASPRQADVMIVAGTVTKKMVPQVVRLFNQMPEPRYVISMGACATSGGPFRDGYNVVRGV 124 Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 D VPVD+Y+PGCPP EAL++ ++ LQ +I Sbjct: 125 DLYVPVDVYIPGCPPRPEALLHALMTLQAQI 155 >gi|190893214|ref|YP_001979756.1| NADH-ubiquinone oxidoreductase, chain B [Rhizobium etli CIAT 652] gi|238065034|sp|B3PY57|NUOB2_RHIE6 RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName: Full=NADH dehydrogenase I subunit B 2; AltName: Full=NDH-1 subunit B 2 gi|190698493|gb|ACE92578.1| NADH-ubiquinone oxidoreductase protein, chain B [Rhizobium etli CIAT 652] Length = 167 Score = 218 bits (556), Expect = 3e-55, Method: Composition-based stats. Identities = 83/153 (54%), Positives = 113/153 (73%), Gaps = 1/153 (0%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP 90 + L T+ D ++ W+R+ +L TFG+ACCA+EM+ A RYDL+RFG R SP Sbjct: 5 NNAIRDSVLFTTADSIINWSRSSALWPETFGIACCAIEMISAGCARYDLDRFGVVFRPSP 64 Query: 91 RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150 RQSDVMI+AGT+T K A +RR+YDQMPEPR+VI+MG+CA GG Y+ +Y+VV+G + V Sbjct: 65 RQSDVMIIAGTVTRKFAPVVRRLYDQMPEPRWVIAMGTCAISGGVYN-TYAVVQGSETFV 123 Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 PVD++VPGCPP EAL++G LLLQ+KI+R + Sbjct: 124 PVDVHVPGCPPRPEALMHGFLLLQEKIKRSRAL 156 >gi|68164807|ref|YP_247603.1| NADH dehydrogenase subunit K [Cucumis sativus] gi|75317261|sp|Q4VZH1|NDHK_CUCSA RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K gi|67511402|emb|CAJ00762.1| NADH dehydrogenase subunit K [Cucumis sativus] gi|74027105|gb|AAZ94655.1| NADH dehydrogenase 32 kDa subunit [Cucumis sativus] gi|115432808|gb|ABI97421.1| NADH-plastoquinone oxidoreductase subunit K [Cucumis sativus] Length = 226 Score = 218 bits (556), Expect = 3e-55, Method: Composition-based stats. Identities = 70/154 (45%), Positives = 102/154 (66%), Gaps = 1/154 (0%) Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87 + T + T+ + L W+R SL + +G +CC +E R+D +R+G PR Sbjct: 7 PLLDRTTQTSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66 Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146 +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG Sbjct: 67 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126 Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 D+++PVD+Y+PGCPP EA+I I L+KKI R Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 160 >gi|218245900|ref|YP_002371271.1| NADH dehydrogenase subunit B [Cyanothece sp. PCC 8801] gi|257058948|ref|YP_003136836.1| NADH dehydrogenase subunit B [Cyanothece sp. PCC 8802] gi|238065003|sp|B7K0X4|NDHK_CYAP8 RecName: Full=NAD(P)H-quinone oxidoreductase subunit K; AltName: Full=NAD(P)H dehydrogenase I subunit K; AltName: Full=NDH-1 subunit K; Short=NDH-K gi|218166378|gb|ACK65115.1| NADH-quinone oxidoreductase, B subunit [Cyanothece sp. PCC 8801] gi|256589114|gb|ACV00001.1| NADH-quinone oxidoreductase, B subunit [Cyanothece sp. PCC 8802] Length = 250 Score = 218 bits (555), Expect = 3e-55, Method: Composition-based stats. Identities = 73/180 (40%), Positives = 112/180 (62%), Gaps = 2/180 (1%) Query: 3 LTTVNQKIISGQSSCSLEKVDADFSR-ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFG 61 ++ ++ EK+ +R ++ + ++T+VD L WAR SL + +G Sbjct: 1 MSPNPTPDLTTIQRQQTEKILNPIARGQVTQDLSENIILTTVDDLHNWARLSSLWPLLYG 60 Query: 62 LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPR 121 ACC +E R+D +RFG PR+SPRQ+D++I AGT+T KMA AL R+Y++MPEP+ Sbjct: 61 TACCFIEFAALIGSRFDFDRFGLVPRSSPRQADLIITAGTITMKMAPALVRLYEEMPEPK 120 Query: 122 YVISMGSCANGGGYY-HYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 YVI+MG+C GG + S + VRG D+++PVD+Y+PGCPP EA+ I+ L+KK+ Sbjct: 121 YVIAMGACTITGGMFSSDSTTAVRGVDKLIPVDVYIPGCPPRPEAIFDAIIKLRKKVSNE 180 >gi|320106231|ref|YP_004181821.1| NADH-quinone oxidoreductase subunit B [Terriglobus saanensis SP1PR4] gi|319924752|gb|ADV81827.1| NADH-quinone oxidoreductase, B subunit [Terriglobus saanensis SP1PR4] Length = 205 Score = 218 bits (555), Expect = 3e-55, Method: Composition-based stats. Identities = 77/147 (52%), Positives = 109/147 (74%), Gaps = 2/147 (1%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQ 92 +G ++ S+D + W R S+ MTFGLACCA+EMM RYD+ RFG R SPRQ Sbjct: 48 QPEGIVLASMDAAINWVRKNSVWPMTFGLACCAIEMMSMGGSRYDIARFGAEVFRPSPRQ 107 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 SD+MI+AG ++ KMA +RR+Y+QMPEP++VISMG+CA GG ++ Y++++G ++I+PV Sbjct: 108 SDLMIIAGRVSQKMAPVIRRLYEQMPEPKWVISMGACATSGGVFNN-YALLQGVNQIIPV 166 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179 D+YVPGCPP E L+Y I LLQ+KI++ Sbjct: 167 DLYVPGCPPRPEQLLYAITLLQEKIQQ 193 >gi|290489716|gb|ADD31242.1| NADH-plastoquinone oxidoreductase subunit K protein [Meliosma aff. cuneifolia Moore 333] Length = 285 Score = 218 bits (555), Expect = 3e-55, Method: Composition-based stats. Identities = 70/175 (40%), Positives = 109/175 (62%), Gaps = 1/175 (0%) Query: 7 NQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCA 66 + K + + +++ + T + T+ + L W+R SL + +G +CC Sbjct: 46 DNKKQKEEKNDIETVMNSIEFPLLERTTQNSVISTTSNDLSNWSRLSSLWPLLYGTSCCF 105 Query: 67 VEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISM 126 +E R+D +R+G PR+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+M Sbjct: 106 IEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAM 165 Query: 127 GSCANGGGYYH-YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 G+C GG + SYS VRG D+++PVD+Y+PGCPP EA+I I L+KK+ R Sbjct: 166 GACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKKVSRE 220 >gi|260436695|ref|ZP_05790665.1| NAD(P)H-quinone oxidoreductase subunit K [Synechococcus sp. WH 8109] gi|260414569|gb|EEX07865.1| NAD(P)H-quinone oxidoreductase subunit K [Synechococcus sp. WH 8109] Length = 246 Score = 218 bits (555), Expect = 3e-55, Method: Composition-based stats. Identities = 71/152 (46%), Positives = 104/152 (68%), Gaps = 1/152 (0%) Query: 27 SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP 86 + + + ++TS+D L WAR SL + +G ACC +E R+D +RFG P Sbjct: 25 APTVTNDLSENVILTSLDDLHNWARLSSLWPLLYGTACCFIEFAALLGSRFDFDRFGLVP 84 Query: 87 RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRG 145 R+SPRQ+D++IVAGT+T KMA AL R+Y+QMPEP+YVI+MG+C GG + S + VRG Sbjct: 85 RSSPRQADLLIVAGTVTMKMAPALVRLYEQMPEPKYVIAMGACTITGGMFSADSTTAVRG 144 Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 D+++PVD+Y+PGCPP EA+ ++ L+KK+ Sbjct: 145 VDKLIPVDLYLPGCPPRPEAIFDAVIKLRKKV 176 >gi|333031513|ref|ZP_08459574.1| NAD(P)H-quinone oxidoreductase subunit K [Bacteroides coprosuis DSM 18011] gi|332742110|gb|EGJ72592.1| NAD(P)H-quinone oxidoreductase subunit K [Bacteroides coprosuis DSM 18011] Length = 214 Score = 218 bits (555), Expect = 3e-55, Method: Composition-based stats. Identities = 79/182 (43%), Positives = 117/182 (64%), Gaps = 4/182 (2%) Query: 1 MGLTTVNQKIISGQSSCSLE-KVDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMW 57 M + N+KI +S E K + + E+ G +V +D +V W R+ SL Sbjct: 1 MEIKKQNKKIPKIKSMAYDEFKNNDYLENMVEELRSNGTNVVVGVLDDVVNWGRSNSLWP 60 Query: 58 MTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQ 116 +TF +CC +E M R+D RFGF R SPRQ+D ++VAGT+T+KMA L+R+YDQ Sbjct: 61 LTFATSCCGIEFMAIGAARHDFARFGFEVARPSPRQADFIMVAGTITDKMAPVLKRLYDQ 120 Query: 117 MPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKK 176 M +P+YVI+ G+C GG + SY VV+G D+I+PVD+++PGCPP EA+IYG++ LQ+K Sbjct: 121 MADPKYVIACGACTITGGPFKNSYHVVKGIDKILPVDVFIPGCPPRPEAMIYGLMQLQRK 180 Query: 177 IR 178 ++ Sbjct: 181 VK 182 >gi|327191021|gb|EGE58075.1| NADH-ubiquinone oxidoreductase protein, chain B [Rhizobium etli CNPAF512] Length = 167 Score = 218 bits (555), Expect = 3e-55, Method: Composition-based stats. Identities = 83/153 (54%), Positives = 113/153 (73%), Gaps = 1/153 (0%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP 90 + L T+ D ++ W+R+ +L TFG+ACCA+EM+ A RYDL+RFG R SP Sbjct: 5 NNAIRDSVLFTTADSVINWSRSSALWPETFGIACCAIEMISAGCARYDLDRFGVVFRPSP 64 Query: 91 RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150 RQSDVMI+AGT+T K A +RR+YDQMPEPR+VI+MG+CA GG Y+ +Y+VV+G + V Sbjct: 65 RQSDVMIIAGTVTRKFAPVVRRLYDQMPEPRWVIAMGTCAISGGVYN-TYAVVQGSETFV 123 Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 PVD++VPGCPP EAL++G LLLQ+KI+R + Sbjct: 124 PVDVHVPGCPPRPEALMHGFLLLQEKIKRSRAL 156 >gi|323148834|ref|YP_004221927.1| NADH-plastoquinone oxidoreductase subunit K [Erodium carvifolium] gi|316926298|gb|ADU58151.1| NADH-plastoquinone oxidoreductase subunit K [Erodium carvifolium] Length = 227 Score = 218 bits (555), Expect = 3e-55, Method: Composition-based stats. Identities = 71/148 (47%), Positives = 101/148 (68%), Gaps = 1/148 (0%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93 T L T+ + L W+R SL + +G +CC +E R+D +R+G PR+SPRQ+ Sbjct: 13 TQNSVLSTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 72 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGCDRIVPV 152 D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++PV Sbjct: 73 DLVLTAGTVTLKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 132 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRV 180 D+Y+PGCPP EA+I I L+KKI R Sbjct: 133 DVYLPGCPPKPEAVIDAITKLRKKISRE 160 >gi|256380664|ref|YP_003104324.1| NADH dehydrogenase subunit B [Actinosynnema mirum DSM 43827] gi|255924967|gb|ACU40478.1| NADH-quinone oxidoreductase, B subunit [Actinosynnema mirum DSM 43827] Length = 182 Score = 218 bits (555), Expect = 3e-55, Method: Composition-based stats. Identities = 87/148 (58%), Positives = 107/148 (72%), Gaps = 2/148 (1%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89 E G L+ SV++LV W R SL TFGLACCA+EMM PRYDL RFG RAS Sbjct: 4 EEKLPNGVLLVSVEKLVNWTRKSSLWPATFGLACCAIEMMTTGAPRYDLARFGMEVFRAS 63 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQ+D+MIVAG +TNKMA LR++YDQMPEPR+V++MG CA+ GG ++ Y+VV+G D I Sbjct: 64 PRQADLMIVAGRVTNKMAPVLRQIYDQMPEPRWVLAMGVCASSGGMFNN-YAVVQGVDHI 122 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKI 177 VPVD+Y+PGCPP E LI IL + KI Sbjct: 123 VPVDMYLPGCPPRPEMLIDAILKIHAKI 150 >gi|148241313|ref|YP_001226470.1| NADH dehydrogenase subunit B [Synechococcus sp. RCC307] gi|218527933|sp|A5GQF8|NDHK_SYNR3 RecName: Full=NAD(P)H-quinone oxidoreductase subunit K; AltName: Full=NAD(P)H dehydrogenase I subunit K; AltName: Full=NDH-1 subunit K; Short=NDH-K gi|147849623|emb|CAK27117.1| NAD(P)H-quinone oxidoreductase subunit K [Synechococcus sp. RCC307] Length = 242 Score = 218 bits (555), Expect = 3e-55, Method: Composition-based stats. Identities = 71/145 (48%), Positives = 102/145 (70%), Gaps = 1/145 (0%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93 + ++TS+D L WAR SL + +G ACC +E R+D +RFG PR+SPRQ+ Sbjct: 29 LSENVILTSLDDLHNWARLSSLWPLLYGTACCFIEFAALIGSRFDFDRFGLVPRSSPRQA 88 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGCDRIVPV 152 D++IVAGT+T KMA AL R+Y+QMPEP+YVI+MG+C GG + S + VRG D+++PV Sbjct: 89 DLLIVAGTVTMKMAPALVRLYEQMPEPKYVIAMGACTITGGMFSADSTTAVRGVDKLIPV 148 Query: 153 DIYVPGCPPTAEALIYGILLLQKKI 177 D+Y+PGCPP EA+ ++ L+KK+ Sbjct: 149 DLYLPGCPPRPEAIFDAVIKLRKKV 173 >gi|290489740|gb|ADD31254.1| NADH-plastoquinone oxidoreductase subunit K protein [Oxalis latifolia] Length = 246 Score = 218 bits (555), Expect = 3e-55, Method: Composition-based stats. Identities = 69/149 (46%), Positives = 101/149 (67%), Gaps = 1/149 (0%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 T + T+ + L W+R SL + +G +CC +E R+D +R+G PR+SPRQ Sbjct: 33 TTKNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQ 92 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGCDRIVP 151 +D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++P Sbjct: 93 ADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIP 152 Query: 152 VDIYVPGCPPTAEALIYGILLLQKKIRRV 180 VD+Y+PGCPP EA+I I L+KKI + Sbjct: 153 VDVYLPGCPPKPEAVIDAITKLRKKISQE 181 >gi|82754631|gb|ABB90045.1| NADH dehydrogenase subunit K [Solanum tuberosum] Length = 284 Score = 218 bits (555), Expect = 3e-55, Method: Composition-based stats. Identities = 70/160 (43%), Positives = 105/160 (65%), Gaps = 1/160 (0%) Query: 22 VDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLER 81 +++ + + T+++ L W+R SL + +G +CC +E R+D +R Sbjct: 60 MNSIQFPLLDRTAPNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDR 119 Query: 82 FGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSY 140 +G PR+SPRQSD+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SY Sbjct: 120 YGLVPRSSPRQSDLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSY 179 Query: 141 SVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 S VRG D+++PVD+Y+PGCPP EA+I I L+KKI R Sbjct: 180 STVRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 219 >gi|195953122|ref|YP_002121412.1| NADH-quinone oxidoreductase, B subunit [Hydrogenobaculum sp. Y04AAS1] gi|238065161|sp|B4U8H3|NUOB_HYDS0 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|195932734|gb|ACG57434.1| NADH-quinone oxidoreductase, B subunit [Hydrogenobaculum sp. Y04AAS1] Length = 177 Score = 218 bits (555), Expect = 3e-55, Method: Composition-based stats. Identities = 84/156 (53%), Positives = 118/156 (75%), Gaps = 1/156 (0%) Query: 29 ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88 ++S I GF+ T+VD+L++W R +L +T GLACCA+EMM A+ R+D++R G RA Sbjct: 1 MASSINGNGFITTTVDELLSWGRRNALWPVTIGLACCAIEMMHAAASRFDIDRLGMIFRA 60 Query: 89 SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 148 SPRQ+DV+IVAGT+ NK+A L+ V+DQMPEP++ ISMG CA+ GG + +YS ++G DR Sbjct: 61 SPRQADVLIVAGTVVNKVAPMLKLVWDQMPEPKWCISMGGCASAGGPFP-TYSTLQGIDR 119 Query: 149 IVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 I+PVD+Y+PGCPPT + LIYG+L LQ+KIR + Sbjct: 120 IIPVDVYIPGCPPTPQGLIYGLLELQRKIREKKVTR 155 >gi|139389268|ref|YP_001123034.1| photosystem II G protein [Aethionema grandiflorum] gi|218527880|sp|A4QJK3|NDHK_AETGR RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K gi|134286230|dbj|BAF49858.1| photosystem II G protein [Aethionema grandiflorum] Length = 229 Score = 218 bits (555), Expect = 3e-55, Method: Composition-based stats. Identities = 69/154 (44%), Positives = 102/154 (66%), Gaps = 1/154 (0%) Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87 + T + T+++ L W+R SL + +G +CC +E R+D +R+G PR Sbjct: 7 PVLDRTTKNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66 Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146 +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG Sbjct: 67 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126 Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 D+++PVD+Y+PGCPP EA+I I L+ KI R Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDAITKLRTKIARE 160 >gi|320353962|ref|YP_004195301.1| NADH dehydrogenase subunit B [Desulfobulbus propionicus DSM 2032] gi|320122464|gb|ADW18010.1| NADH dehydrogenase subunit B [Desulfobulbus propionicus DSM 2032] Length = 173 Score = 218 bits (555), Expect = 4e-55, Method: Composition-based stats. Identities = 85/149 (57%), Positives = 109/149 (73%), Gaps = 1/149 (0%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 I ++ +++LV W R GS+ +TFGLACCA+EMM A DL+RFG RASPRQ Sbjct: 19 IPGANAILGPLNKLVNWGRAGSIWPVTFGLACCAIEMMDAGASTNDLDRFGILFRASPRQ 78 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 +D M+VAGTL+ KMA LRRVYDQMPEPRYV++MGSCA GG + +Y+V +G D+I+PV Sbjct: 79 ADCMVVAGTLSKKMAPVLRRVYDQMPEPRYVLAMGSCACSGGVF-DTYAVTQGVDQIIPV 137 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVG 181 D+YVPGCPP EAL+ G L LQ+KI + Sbjct: 138 DVYVPGCPPRPEALLEGFLKLQEKILKEQ 166 >gi|317156952|ref|XP_001826129.2| NADH dehydrogenase [ubiquinone] iron-sulfur protein 7 [Aspergillus oryzae RIB40] Length = 155 Score = 218 bits (555), Expect = 4e-55, Method: Composition-based stats. Identities = 104/146 (71%), Positives = 121/146 (82%) Query: 39 LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIV 98 + T+ DQL+ WAR GSL +TF LACC +EMM SMPRYD +R G RASPRQ+DVMIV Sbjct: 5 VKTTTDQLINWARQGSLWPLTFALACCGIEMMHVSMPRYDQDRLGIIFRASPRQADVMIV 64 Query: 99 AGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPG 158 AGT+TNKMA ALR++YDQMP+P++VISMGSCANGGGYY+YSYSVVRG DR+VPVDIYVPG Sbjct: 65 AGTVTNKMAPALRQLYDQMPDPKWVISMGSCANGGGYYYYSYSVVRGVDRVVPVDIYVPG 124 Query: 159 CPPTAEALIYGILLLQKKIRRVGNVK 184 CPPT EAL+Y I LQKKIRR + Sbjct: 125 CPPTPEALMYAIFQLQKKIRRTKVTR 150 >gi|114054474|gb|ABI49867.1| NADH-plastoquinone oxidoreductase subunit K [Nandina domestica] Length = 285 Score = 218 bits (555), Expect = 4e-55, Method: Composition-based stats. Identities = 71/175 (40%), Positives = 111/175 (63%), Gaps = 1/175 (0%) Query: 7 NQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCA 66 + K + + + +++ + IT + T+ + L W+R SL + +G +CC Sbjct: 46 DNKKKNEEKNYIETVMNSIEFPLLDRITQNSVISTTSNDLSNWSRLSSLWPLLYGTSCCF 105 Query: 67 VEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISM 126 +E R+D +R+G PR+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+M Sbjct: 106 IEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAM 165 Query: 127 GSCANGGGYYH-YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 G+C GG + SYS VRG D+++PVD+Y+PGCPP EA+I I L+KK+ R Sbjct: 166 GACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKKVSRE 220 >gi|242910158|ref|YP_002970648.1| NADH-plastoquinone oxidoreductase subunit K [Alsophila spinulosa] gi|218454827|gb|ACK77164.1| NADH-plastoquinone oxidoreductase subunit K [Alsophila spinulosa] Length = 251 Score = 218 bits (555), Expect = 4e-55, Method: Composition-based stats. Identities = 70/184 (38%), Positives = 111/184 (60%), Gaps = 5/184 (2%) Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKG----FLVTSVDQLVTWARTGSLMWM 58 + + + S + + + I S +G L+ +++ W+R SL + Sbjct: 1 MVSSPEYSSEKSKSRVDPRENIFINSIESMFPDRGASNSILLANINDFSNWSRLSSLWPL 60 Query: 59 TFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMP 118 +G +CC +E R+D +R+G PR+SPRQ+D+++ AGT+T KMA +L R+Y+QMP Sbjct: 61 LYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLIVTAGTITMKMAPSLVRLYEQMP 120 Query: 119 EPRYVISMGSCANGGGYYH-YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 EP+YVI+MG+C GG + SYS VRG D+++PVD+Y+PGCPP EA+I + L+KK+ Sbjct: 121 EPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDLYLPGCPPKPEAIIDAVTKLRKKM 180 Query: 178 RRVG 181 R Sbjct: 181 AREN 184 >gi|163781785|ref|ZP_02176785.1| NADH dehydrogenase I chain B [Hydrogenivirga sp. 128-5-R1-1] gi|159883005|gb|EDP76509.1| NADH dehydrogenase I chain B [Hydrogenivirga sp. 128-5-R1-1] Length = 179 Score = 217 bits (554), Expect = 4e-55, Method: Composition-based stats. Identities = 85/152 (55%), Positives = 115/152 (75%), Gaps = 1/152 (0%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 I GF+ T+VD+L+ W R +L +T GLACCA+EMM A+ R+DL+R G RASPRQ Sbjct: 4 INSNGFVTTTVDELLKWGRRNALWPVTIGLACCAIEMMHAAASRFDLDRLGVIFRASPRQ 63 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 SDV+IVAGT+ NK+A L+ ++DQMP+P++ ISMG C++ GG + +YS ++G DRI+PV Sbjct: 64 SDVLIVAGTVVNKVAPMLKLIWDQMPDPKWCISMGGCSSAGGPFP-TYSTLQGIDRIIPV 122 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 D+YVPGCPPT + LIYGIL LQ+KI+ G K Sbjct: 123 DVYVPGCPPTPQGLIYGILQLQRKIKEQGVTK 154 >gi|325126869|ref|YP_004286106.1| NADH-plastoquinone oxidoreductase subunit K [Fragaria vesca subsp. vesca] gi|324022781|gb|ADY15355.1| NADH-plastoquinone oxidoreductase subunit K [Fragaria vesca subsp. vesca] Length = 226 Score = 217 bits (554), Expect = 4e-55, Method: Composition-based stats. Identities = 70/154 (45%), Positives = 101/154 (65%), Gaps = 1/154 (0%) Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87 + T + T+ L W+R SL + +G +CC +E R+D +R+G PR Sbjct: 8 PLLDRTTQNSVISTTSSDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 67 Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146 +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG Sbjct: 68 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 127 Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 D+++PVD+Y+PGCPP EA+I I L+KKI R Sbjct: 128 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 161 >gi|124024214|ref|YP_001018521.1| NADH dehydrogenase subunit B [Prochlorococcus marinus str. MIT 9303] gi|218527919|sp|A2CCP6|NDHK_PROM3 RecName: Full=NAD(P)H-quinone oxidoreductase subunit K; AltName: Full=NAD(P)H dehydrogenase I subunit K; AltName: Full=NDH-1 subunit K; Short=NDH-K gi|123964500|gb|ABM79256.1| putative respiratory-chain NADH dehydrogenase subunit [Prochlorococcus marinus str. MIT 9303] Length = 250 Score = 217 bits (554), Expect = 4e-55, Method: Composition-based stats. Identities = 73/152 (48%), Positives = 107/152 (70%), Gaps = 2/152 (1%) Query: 27 SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP 86 ++SE++ ++TS+D L WAR SL + +G ACC +E R+D +RFG P Sbjct: 24 PSVTSELSE-NIILTSLDDLHNWARLSSLWPLLYGTACCFIEFAALIGSRFDFDRFGLVP 82 Query: 87 RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRG 145 R+SPRQ+D++IVAGT+T KMA AL R+Y+QMPEP+YVI+MG+C GG + S + VRG Sbjct: 83 RSSPRQADLLIVAGTVTMKMAPALVRLYEQMPEPKYVIAMGACTITGGMFSADSTTAVRG 142 Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 D+++PVD+Y+PGCPP EA+ ++ L+KK+ Sbjct: 143 VDKLIPVDLYLPGCPPRPEAIFDAVIKLRKKV 174 >gi|116075555|ref|ZP_01472814.1| NADH dehydrogenase subunit B [Synechococcus sp. RS9916] gi|116066870|gb|EAU72625.1| NADH dehydrogenase subunit B [Synechococcus sp. RS9916] Length = 255 Score = 217 bits (554), Expect = 4e-55, Method: Composition-based stats. Identities = 72/158 (45%), Positives = 106/158 (67%), Gaps = 1/158 (0%) Query: 24 ADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFG 83 A+ + + + ++TS+D L WAR SL + +G ACC +E R+D +RFG Sbjct: 27 AEGAPAVTTDLSENVILTSLDDLHNWARLSSLWPLLYGTACCFIEFAALIGSRFDFDRFG 86 Query: 84 FAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSV 142 PR+SPRQ+D++IVAGT+T KMA AL R+Y+QMPEP+YVI+MG+C GG + S + Sbjct: 87 LVPRSSPRQADLLIVAGTVTMKMAPALVRLYEQMPEPKYVIAMGACTITGGMFSADSTTA 146 Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 VRG D+++PVD+Y+PGCPP EA+ ++ L+KK+ Sbjct: 147 VRGVDKLIPVDLYLPGCPPRPEAIFDAVIKLRKKVSNE 184 >gi|291285958|ref|YP_003502774.1| NADH-quinone oxidoreductase, B subunit [Denitrovibrio acetiphilus DSM 12809] gi|290883118|gb|ADD66818.1| NADH-quinone oxidoreductase, B subunit [Denitrovibrio acetiphilus DSM 12809] Length = 158 Score = 217 bits (554), Expect = 4e-55, Method: Composition-based stats. Identities = 79/151 (52%), Positives = 107/151 (70%), Gaps = 1/151 (0%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93 + L TS+D ++ + R GS+ +TFGLACCA+EMM ++DL+R G RA+PRQ+ Sbjct: 8 LPENVLTTSIDNVINYCRKGSIWPVTFGLACCAIEMMATGAAKFDLDRMGIIFRATPRQA 67 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD 153 D+MIVAGT+T KMA +R+VY QMPEP++VI+MGSCA GG Y +YS V+G D ++PVD Sbjct: 68 DLMIVAGTVTRKMAPVVRKVYVQMPEPKWVIAMGSCATSGGIY-DTYSTVQGVDEVIPVD 126 Query: 154 IYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 YVPGCPP EAL+ I+ LQ KI ++ Sbjct: 127 FYVPGCPPRPEALLDAIVALQSKIMTEKVLR 157 >gi|284038505|ref|YP_003388435.1| NADH-quinone oxidoreductase subunit beta [Spirosoma linguale DSM 74] gi|283817798|gb|ADB39636.1| NADH-quinone oxidoreductase, B subunit [Spirosoma linguale DSM 74] Length = 176 Score = 217 bits (554), Expect = 4e-55, Method: Composition-based stats. Identities = 88/153 (57%), Positives = 110/153 (71%), Gaps = 1/153 (0%) Query: 27 SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP 86 + + ++ + L+ W+R S+ M+FGLACCA+EMMQA YDLERFG P Sbjct: 16 PSTTDKTGEASVIMMHSEDLLNWSREKSMWPMSFGLACCAIEMMQAFAASYDLERFGIFP 75 Query: 87 RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRG 145 R SPRQSD+MIV+GT+T KMA +RR+Y+QM EPRYVISMGSC+N GG Y Y VV+G Sbjct: 76 RPSPRQSDIMIVSGTVTFKMADRIRRLYEQMAEPRYVISMGSCSNCGGPYWQHGYHVVKG 135 Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 DRI+PVD+YVPGCPP EALI G + LQ+KIR Sbjct: 136 VDRIIPVDVYVPGCPPRPEALIDGFIKLQEKIR 168 >gi|288928299|ref|ZP_06422146.1| NADH dehydrogenase I, B/C/D subunit [Prevotella sp. oral taxon 317 str. F0108] gi|288331133|gb|EFC69717.1| NADH dehydrogenase I, B/C/D subunit [Prevotella sp. oral taxon 317 str. F0108] Length = 207 Score = 217 bits (554), Expect = 5e-55, Method: Composition-based stats. Identities = 75/161 (46%), Positives = 111/161 (68%), Gaps = 3/161 (1%) Query: 21 KVDADFSRISSEITHKGF--LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78 K + +I +E+ G +V S+DQ + W R+ SL +TF +CC +E M RYD Sbjct: 17 KDNDTLEQIMNELHEGGVNVVVGSLDQAINWGRSNSLWSLTFATSCCGIEFMSVGCARYD 76 Query: 79 LERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137 RFGF R SPRQ+D+++ AGT+TNKMA ++R+YD+M +P+YVI++G CA GG + Sbjct: 77 FARFGFEVTRNSPRQADLIMCAGTITNKMAPVMKRLYDEMADPKYVIAVGGCAISGGPFK 136 Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 SY VVRG + IVPVD+++PGCPP EA++YG++ LQ+K++ Sbjct: 137 SSYHVVRGIEEIVPVDVFIPGCPPRPEAILYGMMQLQRKVK 177 >gi|116071575|ref|ZP_01468843.1| NADH dehydrogenase beta subunit [Synechococcus sp. BL107] gi|116065198|gb|EAU70956.1| NADH dehydrogenase beta subunit [Synechococcus sp. BL107] Length = 244 Score = 217 bits (554), Expect = 5e-55, Method: Composition-based stats. Identities = 72/153 (47%), Positives = 107/153 (69%), Gaps = 2/153 (1%) Query: 26 FSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA 85 +++E++ ++TS+D L WAR SL + +G ACC +E R+D +RFG Sbjct: 23 TPAVTNELSE-NIILTSLDDLHNWARLSSLWPLLYGTACCFIEFAALLGSRFDFDRFGLV 81 Query: 86 PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVR 144 PR+SPRQ+D++IVAGT+T KMA AL R+Y+QMPEP+YVI+MG+C GG + S + VR Sbjct: 82 PRSSPRQADLLIVAGTVTMKMAPALVRLYEQMPEPKYVIAMGACTITGGMFSADSTTAVR 141 Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 G D+++PVD+Y+PGCPP EA+ ++ L+KK+ Sbjct: 142 GVDKLIPVDLYLPGCPPRPEAIFDAVIKLRKKV 174 >gi|307069594|ref|YP_003878071.1| putative NADH:ubiquinone oxidoreductase, chain B [Candidatus Zinderia insecticola CARI] gi|306482854|gb|ADM89725.1| putative NADH:ubiquinone oxidoreductase, chain B [Candidatus Zinderia insecticola CARI] Length = 149 Score = 217 bits (554), Expect = 5e-55, Method: Composition-based stats. Identities = 95/145 (65%), Positives = 117/145 (80%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 I++ F S+ +L W+ + SL +TFGLACCA+EMM A R+DL++FG RASPRQ Sbjct: 2 ISNTSFATFSIKKLKKWSYSKSLWPVTFGLACCAIEMMHAGSSRFDLDQFGLFFRASPRQ 61 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 SD++I+AGTL NKMA LRR+YDQMP P++VISMGSCANGGGYYHYSYSVVRGC+ I+PV Sbjct: 62 SDLIIIAGTLCNKMAPVLRRIYDQMPIPKWVISMGSCANGGGYYHYSYSVVRGCNNIIPV 121 Query: 153 DIYVPGCPPTAEALIYGILLLQKKI 177 DIYVPGCPPT E L+Y I+ L+KKI Sbjct: 122 DIYVPGCPPTPETLLYSIIQLKKKI 146 >gi|257054393|ref|YP_003132225.1| NADH dehydrogenase subunit B [Saccharomonospora viridis DSM 43017] gi|256584265|gb|ACU95398.1| NADH dehydrogenase subunit B [Saccharomonospora viridis DSM 43017] Length = 182 Score = 217 bits (554), Expect = 5e-55, Method: Composition-based stats. Identities = 79/149 (53%), Positives = 107/149 (71%), Gaps = 2/149 (1%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89 E GFL+T+++ +V WAR S+ TFGLACCA+EMM RYD+ RFG A+ Sbjct: 4 EEKLPNGFLLTTLEGVVNWARKNSMWPATFGLACCAIEMMTTGGSRYDIARFGMERFAAT 63 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQ+D+MIVAG +T KMA LR++YDQMPEP++V++MG CA+ GG ++ Y+VV+G D I Sbjct: 64 PRQADLMIVAGRVTQKMAPVLRQIYDQMPEPKWVLAMGVCASSGGMFNN-YAVVQGVDHI 122 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIR 178 VPVD+Y+PGCPP E L+ IL L K++ Sbjct: 123 VPVDMYLPGCPPRPEMLLDAILKLHAKVQ 151 >gi|197131356|gb|ACH47196.1| NADH-plastoquinone oxidoreductase subunit K [Geranium macrorrhizum] Length = 217 Score = 217 bits (554), Expect = 5e-55, Method: Composition-based stats. Identities = 71/148 (47%), Positives = 101/148 (68%), Gaps = 1/148 (0%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93 T L T+ + L W+R SL + +G +CC +E R+D +R+G PR+SPRQ+ Sbjct: 13 TQNSVLSTTPNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 72 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGCDRIVPV 152 D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++PV Sbjct: 73 DLVLTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 132 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRV 180 D+Y+PGCPP EA+I I L+KKI R Sbjct: 133 DVYLPGCPPKPEAVIDAITKLRKKISRE 160 >gi|290489724|gb|ADD31246.1| NADH-plastoquinone oxidoreductase subunit K protein [Berberidopsis corallina] Length = 285 Score = 217 bits (554), Expect = 5e-55, Method: Composition-based stats. Identities = 70/154 (45%), Positives = 103/154 (66%), Gaps = 1/154 (0%) Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87 + T ++T+ + L W+R SL + +G +CC +E R+D +R+G PR Sbjct: 67 PLLDRTTQNSAILTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 126 Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146 +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG Sbjct: 127 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 186 Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 D+++PVD+Y+PGCPP EA+I I L+KKI R Sbjct: 187 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 220 >gi|115531919|ref|YP_784075.1| NADH-plastoquinone oxidoreductase subunit K [Pelargonium x hortorum] gi|122164275|sp|Q06FV6|NDHK_PELHO RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K gi|112382073|gb|ABI17266.1| NADH-plastoquinone oxidoreductase subunit K [Pelargonium x hortorum] Length = 227 Score = 217 bits (554), Expect = 5e-55, Method: Composition-based stats. Identities = 70/160 (43%), Positives = 105/160 (65%), Gaps = 1/160 (0%) Query: 22 VDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLER 81 +++ + T + T+ + L W+R SL + +G +CC +E R+D +R Sbjct: 1 MNSVEFPLLDRRTKNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDR 60 Query: 82 FGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSY 140 +G PR+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SY Sbjct: 61 YGLVPRSSPRQADLVLTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSY 120 Query: 141 SVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 S VRG D+++PVD+Y+PGCPP EA+I I L+KKI R Sbjct: 121 STVRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 160 >gi|21228592|ref|NP_634514.1| F420H2 dehydrogenase subunit [Methanosarcina mazei Go1] gi|7649014|gb|AAF65732.1|AF228525_2 F420H2 dehydrogenase subunit FpoB [Methanosarcina mazei Go1] gi|20907086|gb|AAM32186.1| F420H2 dehydrogenase subunit [Methanosarcina mazei Go1] Length = 184 Score = 217 bits (554), Expect = 5e-55, Method: Composition-based stats. Identities = 74/173 (42%), Positives = 104/173 (60%), Gaps = 1/173 (0%) Query: 6 VNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACC 65 V + + E+V + +S I H T ++ W R SL +MT + CC Sbjct: 4 VKETKTNNSKENPEEEVPGVITTTTSAI-HNFLKKTKAQDIINWGRKNSLWFMTQPMGCC 62 Query: 66 AVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVIS 125 VEM+ YD +RFG PR SPR +DVMI++G +T K AL+R++DQMP P++VI+ Sbjct: 63 GVEMIATGCAHYDTDRFGIIPRNSPRHADVMIISGYVTKKYLPALKRLWDQMPAPKWVIA 122 Query: 126 MGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 MG CA GG ++ SYS V+ D I P+D+Y+PGCPP EALI G + LQ+KI+ Sbjct: 123 MGDCAISGGPFYESYSTVQNIDEIFPIDVYIPGCPPRPEALIQGFVELQEKIK 175 >gi|148238589|ref|YP_001223976.1| NADH dehydrogenase subunit B [Synechococcus sp. WH 7803] gi|218527932|sp|A5GIB4|NDHK_SYNPW RecName: Full=NAD(P)H-quinone oxidoreductase subunit K; AltName: Full=NAD(P)H dehydrogenase I subunit K; AltName: Full=NDH-1 subunit K; Short=NDH-K gi|147847128|emb|CAK22679.1| NAD(P)H-quinone oxidoreductase subunit K [Synechococcus sp. WH 7803] Length = 248 Score = 217 bits (554), Expect = 5e-55, Method: Composition-based stats. Identities = 73/155 (47%), Positives = 107/155 (69%), Gaps = 1/155 (0%) Query: 24 ADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFG 83 AD + ++ + ++TS+D L WAR SL + +G ACC +E R+D +RFG Sbjct: 26 ADGAPTVTQDLSENVILTSLDDLHNWARLSSLWPLLYGTACCFIEFAALLGSRFDFDRFG 85 Query: 84 FAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSV 142 PR+SPRQ+D++IVAGT+T KMA AL R+Y+QMPEP+YVI+MG+C GG + S + Sbjct: 86 LVPRSSPRQADLLIVAGTVTMKMAPALVRLYEQMPEPKYVIAMGACTITGGMFSADSTTA 145 Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 VRG D+++PVD+Y+PGCPP EA+ ++ L+KK+ Sbjct: 146 VRGVDKLIPVDLYMPGCPPRPEAIFDAVIKLRKKV 180 >gi|149909804|ref|ZP_01898455.1| NuoB2 NADH I CHAIN B [Moritella sp. PE36] gi|149807136|gb|EDM67092.1| NuoB2 NADH I CHAIN B [Moritella sp. PE36] Length = 181 Score = 217 bits (553), Expect = 5e-55, Method: Composition-based stats. Identities = 83/147 (56%), Positives = 111/147 (75%), Gaps = 1/147 (0%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP 90 +E L T+ D ++ W+R SL TFG+ACCA+EM+ A RYDL+RFG R+SP Sbjct: 5 TERYKDNVLFTTSDSIINWSRKSSLWPETFGIACCAIEMIAAGCARYDLDRFGVVFRSSP 64 Query: 91 RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150 RQSDVMI+AGT+T KMA +RR+YDQMPEPRYVI+MG+CA GG Y+ +YSVV+G D V Sbjct: 65 RQSDVMIIAGTVTKKMAPIIRRLYDQMPEPRYVIAMGTCAISGGVYN-TYSVVQGSDLFV 123 Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKI 177 PVD++V GCPP +AL++ ++LLQ++I Sbjct: 124 PVDVHVAGCPPRPDALLHAMVLLQQQI 150 >gi|290489738|gb|ADD31253.1| NADH-plastoquinone oxidoreductase subunit K protein [Liquidambar styraciflua] Length = 285 Score = 217 bits (553), Expect = 5e-55, Method: Composition-based stats. Identities = 70/154 (45%), Positives = 102/154 (66%), Gaps = 1/154 (0%) Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87 + T + T+ + L W+R SL + +G +CC +E R+D +R+G PR Sbjct: 67 PLLDRTTQNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 126 Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146 +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG Sbjct: 127 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 186 Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 D+++PVD+Y+PGCPP EA+I I L+KKI R Sbjct: 187 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 220 >gi|284992924|ref|YP_003411478.1| NADH-quinone oxidoreductase subunit B [Geodermatophilus obscurus DSM 43160] gi|284066169|gb|ADB77107.1| NADH-quinone oxidoreductase, B subunit [Geodermatophilus obscurus DSM 43160] Length = 226 Score = 217 bits (553), Expect = 5e-55, Method: Composition-based stats. Identities = 83/151 (54%), Positives = 105/151 (69%), Gaps = 2/151 (1%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89 E G L+TSV++LV W R SL TFGLACCA+EMM RYDL RFG RAS Sbjct: 4 EEKLPSGVLLTSVEKLVNWTRKSSLWPATFGLACCAIEMMATGAGRYDLARFGMEVFRAS 63 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQ+D+MIVAG ++ KMA LR++YDQMPEPR+V++MG CA+ GG ++ Y++V+G D + Sbjct: 64 PRQADLMIVAGRVSQKMAPVLRQIYDQMPEPRWVLAMGVCASSGGMFNN-YAIVQGVDHV 122 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 VPVD+Y+PGCPP E L IL L KI Sbjct: 123 VPVDMYLPGCPPRPEMLTDAILKLHHKIMHE 153 >gi|229577758|ref|YP_002836094.1| NADH-plastoquinone oxidoreductase subunit K [Megaleranthis saniculifolia] gi|226933886|gb|ACO92019.1| NADH-plastoquinone oxidoreductase subunit K [Megaleranthis saniculifolia] Length = 217 Score = 217 bits (553), Expect = 5e-55, Method: Composition-based stats. Identities = 70/158 (44%), Positives = 105/158 (66%), Gaps = 2/158 (1%) Query: 25 DFSRISSEITHKG-FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFG 83 +F + I + + T+ + L W+R SL + +G +CC +E R+D +R+G Sbjct: 5 EFPLLDRTIQNSNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYG 64 Query: 84 FAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSV 142 PR+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS Sbjct: 65 LVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYST 124 Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 VRG D+++PVD+Y+PGCPP EA+I I L+KK+ R Sbjct: 125 VRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKKVSRE 162 >gi|172036678|ref|YP_001803179.1| NADH dehydrogenase subunit B [Cyanothece sp. ATCC 51142] gi|218527887|sp|B1WZG1|NDHK_CYAA5 RecName: Full=NAD(P)H-quinone oxidoreductase subunit K; AltName: Full=NAD(P)H dehydrogenase I subunit K; AltName: Full=NDH-1 subunit K; Short=NDH-K gi|171698132|gb|ACB51113.1| NADH dehydrogenase subunit K [Cyanothece sp. ATCC 51142] Length = 247 Score = 217 bits (553), Expect = 5e-55, Method: Composition-based stats. Identities = 69/151 (45%), Positives = 103/151 (68%), Gaps = 1/151 (0%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP 90 ++ + ++T+VD L WAR SL + +G ACC +E R+D +RFG PR+SP Sbjct: 30 TQDLSENIILTTVDDLHNWARLSSLWPLLYGTACCFIEFAALIGSRFDFDRFGLVPRSSP 89 Query: 91 RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGCDRI 149 RQ+D++I AGT+T KMA AL R+Y++MP+P+YVI+MG+C GG + S + VRG D++ Sbjct: 90 RQADLIITAGTITMKMAPALVRLYEEMPDPKYVIAMGACTITGGMFSSDSTTAVRGVDKL 149 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 +PVD+Y+PGCPP EA+ I+ L+KK+ Sbjct: 150 IPVDVYIPGCPPRPEAIFDAIIKLRKKVSNE 180 >gi|148262416|ref|YP_001229122.1| trifunctional NADH dehydrogenase I subunit B/C/D [Geobacter uraniireducens Rf4] gi|218528048|sp|A5GCZ4|NUBCD_GEOUR RecName: Full=NADH-quinone oxidoreductase subunit B/C/D; AltName: Full=NADH dehydrogenase I subunit B/C/D; AltName: Full=NDH-1 subunit B/C/D gi|146395916|gb|ABQ24549.1| NADH dehydrogenase subunit D / NADH dehydrogenase subunit B / NADH dehydrogenase subunit C [Geobacter uraniireducens Rf4] Length = 793 Score = 217 bits (553), Expect = 5e-55, Method: Composition-based stats. Identities = 77/150 (51%), Positives = 107/150 (71%), Gaps = 2/150 (1%) Query: 30 SSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RA 88 H ++ ++D L+ W R SL M FGL+CC VEMM + RYD+ RFG R Sbjct: 4 QDATPHNNVILANLDDLINWGRANSLWPMFFGLSCCFVEMMTSFTSRYDISRFGAEVLRG 63 Query: 89 SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 148 +PR++D+M++AGT+ KMA ++ R+Y+QM EPR+VISMGSCAN GG Y YSVV+G ++ Sbjct: 64 TPREADLMVIAGTVFKKMAPSILRLYEQMAEPRWVISMGSCANSGGMY-DVYSVVQGVNQ 122 Query: 149 IVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 I+PVD+YVPGCPP EA + G++LLQ+KI+ Sbjct: 123 IIPVDVYVPGCPPRPEAFLQGLMLLQEKIK 152 >gi|154795221|ref|YP_740569.2| NADH-plastoquinone oxidoreductase subunit K [Platanus occidentalis] gi|218527952|sp|Q09G42|NDHK_PLAOC RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K Length = 225 Score = 217 bits (553), Expect = 5e-55, Method: Composition-based stats. Identities = 69/154 (44%), Positives = 102/154 (66%), Gaps = 1/154 (0%) Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87 + T + T+ + L W+R SL + +G +CC +E R+D +R+G PR Sbjct: 7 PLLDRTTQNSVISTTPNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66 Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146 +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG Sbjct: 67 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126 Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 D+++PVD+Y+PGCPP EA+I I L+KK+ R Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKVSRE 160 >gi|218527934|sp|A9QC82|NDHK_TRACE RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K gi|156598845|gb|ABU85675.1| NADH-plastoquinone oxidoreductase subunit K [Trachelium caeruleum] Length = 227 Score = 217 bits (553), Expect = 5e-55, Method: Composition-based stats. Identities = 72/157 (45%), Positives = 106/157 (67%), Gaps = 2/157 (1%) Query: 25 DFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF 84 DF ++ T + T+ ++L W+R SL + +G +CC +E R+D +R+G Sbjct: 5 DFPLLNRR-TQNSVISTTPNELSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGL 63 Query: 85 APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVV 143 PR+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS V Sbjct: 64 VPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTV 123 Query: 144 RGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 RG D+++PVD+Y+PGCPP EA+I I L+KKI R Sbjct: 124 RGVDKLLPVDVYLPGCPPKPEAVIDAITKLRKKISRE 160 >gi|225544128|ref|YP_002720116.1| ndhK [Jatropha curcas] gi|224979569|gb|ACN72696.1| ndhK [Jatropha curcas] Length = 225 Score = 217 bits (553), Expect = 6e-55, Method: Composition-based stats. Identities = 70/154 (45%), Positives = 103/154 (66%), Gaps = 1/154 (0%) Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87 + + T + T+ + L W+R SL + +G +CC +E R+D +R+G PR Sbjct: 7 PLLDQTTKISVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66 Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146 +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG Sbjct: 67 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126 Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 D+++PVD+Y+PGCPP EA+I I L+KKI R Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 160 >gi|331699311|ref|YP_004335550.1| NAD(P)H-quinone oxidoreductase subunit K [Pseudonocardia dioxanivorans CB1190] gi|326954000|gb|AEA27697.1| NAD(P)H-quinone oxidoreductase subunit K [Pseudonocardia dioxanivorans CB1190] Length = 183 Score = 217 bits (553), Expect = 6e-55, Method: Composition-based stats. Identities = 84/148 (56%), Positives = 108/148 (72%), Gaps = 2/148 (1%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89 E G L+T+V++LV W R SL TFGLACCA+EMM PRYDL RFG RAS Sbjct: 4 EEKLPSGVLLTNVEKLVNWTRKSSLWPATFGLACCAIEMMTTGAPRYDLARFGMEVFRAS 63 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQ+D+MIVAG ++NKMA LR++YDQMPEPR+V++MG CA+ GG ++ Y++V+G D + Sbjct: 64 PRQADLMIVAGRVSNKMAPVLRQIYDQMPEPRWVLAMGVCASSGGMFNN-YAIVQGVDHV 122 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKI 177 VPVD+Y+PGCPP E LI IL + KI Sbjct: 123 VPVDMYLPGCPPRPEMLIDAILKIHAKI 150 >gi|318042790|ref|ZP_07974746.1| NADH dehydrogenase subunit B [Synechococcus sp. CB0101] Length = 241 Score = 217 bits (553), Expect = 6e-55, Method: Composition-based stats. Identities = 70/145 (48%), Positives = 102/145 (70%), Gaps = 1/145 (0%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93 + ++T++D L WAR SL + +G ACC +E R+D +RFG PR+SPRQ+ Sbjct: 30 LSENVILTTLDDLHNWARLSSLWPLLYGTACCFIEFAALIGSRFDFDRFGLVPRSSPRQA 89 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGCDRIVPV 152 D++IVAGT+T KMA AL R+Y+QMPEP+YVI+MG+C GG + S + VRG D+++PV Sbjct: 90 DLLIVAGTVTMKMAPALVRLYEQMPEPKYVIAMGACTITGGMFSADSTTAVRGVDKLIPV 149 Query: 153 DIYVPGCPPTAEALIYGILLLQKKI 177 D+Y+PGCPP EA+ ++ L+KK+ Sbjct: 150 DLYLPGCPPRPEAIFDAVIKLRKKV 174 >gi|88808082|ref|ZP_01123593.1| NADH dehydrogenase beta subunit [Synechococcus sp. WH 7805] gi|88788121|gb|EAR19277.1| NADH dehydrogenase beta subunit [Synechococcus sp. WH 7805] Length = 248 Score = 217 bits (553), Expect = 6e-55, Method: Composition-based stats. Identities = 73/155 (47%), Positives = 107/155 (69%), Gaps = 1/155 (0%) Query: 24 ADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFG 83 AD + ++ + ++TS+D L WAR SL + +G ACC +E R+D +RFG Sbjct: 26 ADGAPTVTQDLSENVILTSLDDLHNWARLSSLWPLLYGTACCFIEFAALLGSRFDFDRFG 85 Query: 84 FAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSV 142 PR+SPRQ+D++IVAGT+T KMA AL R+Y+QMPEP+YVI+MG+C GG + S + Sbjct: 86 LVPRSSPRQADLLIVAGTVTMKMAPALVRLYEQMPEPKYVIAMGACTITGGMFSADSTTA 145 Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 VRG D+++PVD+Y+PGCPP EA+ ++ L+KK+ Sbjct: 146 VRGVDKLIPVDLYMPGCPPRPEAIFDAVIKLRKKV 180 >gi|218527896|sp|B2XWK8|NDHK_FAGEA RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K Length = 225 Score = 217 bits (553), Expect = 6e-55, Method: Composition-based stats. Identities = 70/146 (47%), Positives = 101/146 (69%), Gaps = 1/146 (0%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 IT + T+ + L W+R SL + +G +CC +E R+D +R+G PR+SPRQ Sbjct: 12 ITPNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQ 71 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGCDRIVP 151 +D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++P Sbjct: 72 ADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIP 131 Query: 152 VDIYVPGCPPTAEALIYGILLLQKKI 177 VD+Y+PGCPP EA+I I L+KKI Sbjct: 132 VDVYLPGCPPKPEAVIDAITKLRKKI 157 >gi|290489718|gb|ADD31243.1| NADH-plastoquinone oxidoreductase subunit K protein [Nelumbo nucifera] Length = 285 Score = 217 bits (553), Expect = 6e-55, Method: Composition-based stats. Identities = 69/148 (46%), Positives = 102/148 (68%), Gaps = 1/148 (0%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93 T + T+++ L W+R SL + +G +CC +E R+D +R+G PR+SPRQ+ Sbjct: 73 TQNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 132 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGCDRIVPV 152 D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++PV Sbjct: 133 DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 192 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRV 180 D+Y+PGCPP EA+I I L+KK+ R Sbjct: 193 DVYLPGCPPKPEAVIDAITKLRKKVSRE 220 >gi|319955917|ref|YP_004167180.1| NADH dehydrogenase subunit b [Nitratifractor salsuginis DSM 16511] gi|319418321|gb|ADV45431.1| NADH dehydrogenase subunit B [Nitratifractor salsuginis DSM 16511] Length = 170 Score = 217 bits (553), Expect = 6e-55, Method: Composition-based stats. Identities = 82/143 (57%), Positives = 109/143 (76%), Gaps = 1/143 (0%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 +T+VD+L+ W R+ SL +T+GLACCA+EMM + R+D +R G RASPRQ+DVMI Sbjct: 16 VALTTVDKLLNWGRSNSLWPLTYGLACCAIEMMASGASRFDFDRMGVIFRASPRQADVMI 75 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 +AGTL+ K A RR+YDQM EP++VISMGSCAN GG ++ +Y+ V+G DRI+PVDIY+P Sbjct: 76 LAGTLSKKHAEFARRLYDQMAEPKWVISMGSCANTGGMFN-TYATVQGVDRIIPVDIYLP 134 Query: 158 GCPPTAEALIYGILLLQKKIRRV 180 GC P E L Y +++LQKKIRR Sbjct: 135 GCAPRPETLQYAMMMLQKKIRRE 157 >gi|78186619|ref|YP_374662.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit [Chlorobium luteolum DSM 273] gi|123583245|sp|Q3B4W2|NUOB_PELLD RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|78166521|gb|ABB23619.1| NADH dehydrogenase subunit B [Chlorobium luteolum DSM 273] Length = 189 Score = 217 bits (553), Expect = 6e-55, Method: Composition-based stats. Identities = 86/147 (58%), Positives = 109/147 (74%), Gaps = 1/147 (0%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 + LV VD ++ WAR SL M FGLACCA+EMM + YDLERFG PR+SPRQ Sbjct: 8 FSRDNVLVAPVDAVLNWARLSSLWPMGFGLACCAIEMMATNASNYDLERFGIFPRSSPRQ 67 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVP 151 SD+MIVAGT++ KMA + R+Y+QMPEPRYV+SMGSC+N GG Y Y V++G DR++P Sbjct: 68 SDLMIVAGTVSMKMAERVVRLYEQMPEPRYVLSMGSCSNCGGPYWEHGYHVLKGVDRVIP 127 Query: 152 VDIYVPGCPPTAEALIYGILLLQKKIR 178 VD+YVPGCPP EALI G++ +Q+ IR Sbjct: 128 VDVYVPGCPPRPEALIGGLMKVQELIR 154 >gi|86359327|ref|YP_471219.1| NADH-ubiquinone oxidoreductase chain B protein [Rhizobium etli CFN 42] gi|123510666|sp|Q2K3U4|NUOB3_RHIEC RecName: Full=NADH-quinone oxidoreductase subunit B 3; AltName: Full=NADH dehydrogenase I subunit B 3; AltName: Full=NDH-1 subunit B 3 gi|86283429|gb|ABC92492.1| NADH-ubiquinone oxidoreductase chain B protein [Rhizobium etli CFN 42] Length = 167 Score = 217 bits (553), Expect = 6e-55, Method: Composition-based stats. Identities = 83/153 (54%), Positives = 113/153 (73%), Gaps = 1/153 (0%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP 90 + L T+ D ++ W+R+ +L TFG+ACCA+EM+ A RYDL+RFG R SP Sbjct: 5 NNAIRDSVLFTTADSVINWSRSSALWPETFGIACCAIEMISAGCARYDLDRFGVVFRPSP 64 Query: 91 RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150 RQSDVMI+AGT+T K A +RR+YDQMPEPR+VI+MG+CA GG Y+ +Y+VV+G + V Sbjct: 65 RQSDVMIIAGTVTRKFAPVVRRLYDQMPEPRWVIAMGTCAISGGVYN-TYAVVQGSETFV 123 Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 PVD++VPGCPP EAL++G LLLQ+KI+R + Sbjct: 124 PVDVHVPGCPPRPEALMHGFLLLQEKIKRSRAL 156 >gi|218527892|sp|A6MMC6|NDHK_CHLSC RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K Length = 222 Score = 217 bits (553), Expect = 6e-55, Method: Composition-based stats. Identities = 67/151 (44%), Positives = 100/151 (66%), Gaps = 1/151 (0%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP 90 + T+ + L W+R SL + +G +CC +E R+D +R+G PR+SP Sbjct: 10 ERTAQNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSP 69 Query: 91 RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGCDRI 149 RQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D++ Sbjct: 70 RQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKL 129 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 +PVD+Y+PGCPP EA+I I L+K++ R Sbjct: 130 IPVDVYLPGCPPKPEAVIDAITKLRKRVSRE 160 >gi|149390272|ref|YP_001294102.1| NADH-plastoquinone oxidoreductase subunit K [Chloranthus spicatus] gi|146744192|gb|ABQ43264.1| NADH-plastoquinone oxidoreductase subunit K [Chloranthus spicatus] Length = 275 Score = 217 bits (553), Expect = 6e-55, Method: Composition-based stats. Identities = 70/181 (38%), Positives = 112/181 (61%), Gaps = 4/181 (2%) Query: 1 MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTF 60 +G+ N+K + ++ +++ + T+ + L W+R SL + + Sbjct: 36 IGMVLKNKKEGKDNIETIMNSIEFPLFERTAQ---NSVISTTSNDLSNWSRLSSLWPLLY 92 Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 G +CC +E R+D +R+G PR+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP Sbjct: 93 GTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEP 152 Query: 121 RYVISMGSCANGGGYYH-YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179 +YVI+MG+C GG + SYS VRG D+++PVD+Y+PGCPP EA+I I L+K++ R Sbjct: 153 KYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKRVSR 212 Query: 180 V 180 Sbjct: 213 E 213 >gi|169794077|ref|YP_001718441.1| NADH dehydrogenase subunit K [Manihot esculenta] gi|326909397|ref|YP_004327666.1| NADH dehydrogenase subunit K [Hevea brasiliensis] gi|218527912|sp|B1NWF4|NDHK_MANES RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K gi|157695889|gb|ABV66158.1| NADH-plastoquinone oxidoreductase subunit K [Manihot esculenta] gi|308523511|gb|ADO33561.1| NADH dehydrogenase subunit K [Hevea brasiliensis] Length = 225 Score = 217 bits (552), Expect = 6e-55, Method: Composition-based stats. Identities = 70/154 (45%), Positives = 102/154 (66%), Gaps = 1/154 (0%) Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87 + T + T+ + L W+R SL + +G +CC +E R+D +R+G PR Sbjct: 7 PLLDRTTQISVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66 Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146 +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG Sbjct: 67 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126 Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 D+++PVD+Y+PGCPP EA+I I L+KKI R Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 160 >gi|113477002|ref|YP_723063.1| NADH dehydrogenase subunit B [Trichodesmium erythraeum IMS101] gi|123160442|sp|Q10YT4|NDHK_TRIEI RecName: Full=NAD(P)H-quinone oxidoreductase subunit K; AltName: Full=NAD(P)H dehydrogenase I subunit K; AltName: Full=NDH-1 subunit K; Short=NDH-K gi|110168050|gb|ABG52590.1| NADH-quinone oxidoreductase, B subunit [Trichodesmium erythraeum IMS101] Length = 240 Score = 217 bits (552), Expect = 6e-55, Method: Composition-based stats. Identities = 75/175 (42%), Positives = 109/175 (62%), Gaps = 11/175 (6%) Query: 4 TTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLA 63 NQKII+ +E+ +S ++T+VD L WA+ SL + +G A Sbjct: 5 PNQNQKIINP-----IEESPTVTQELSE-----NIVLTTVDDLYNWAKLSSLWPLLYGTA 54 Query: 64 CCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYV 123 CC +E R+D +RFG PR+SPRQ+D++I AGT+T K L R+Y+QMPEP+YV Sbjct: 55 CCFIEFAALIGSRFDFDRFGLVPRSSPRQADLLITAGTITMKYTPTLVRLYEQMPEPKYV 114 Query: 124 ISMGSCANGGGYYH-YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 I+MG+C GG + S + VRG D+++PVD+Y+PGCPP EA+I ++ L+KKI Sbjct: 115 IAMGACTITGGMFSMDSPTAVRGVDKLIPVDVYIPGCPPRPEAIIDAVIKLRKKI 169 >gi|313183826|ref|YP_004021669.1| NADH-plastoquinone oxidoreductase subunit K [Prunus persica] gi|309321438|gb|ADO64979.1| NADH-plastoquinone oxidoreductase subunit K [Prunus persica] Length = 226 Score = 217 bits (552), Expect = 7e-55, Method: Composition-based stats. Identities = 70/154 (45%), Positives = 101/154 (65%), Gaps = 1/154 (0%) Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87 + T + T+ L W+R SL + +G +CC +E R+D +R+G PR Sbjct: 8 PLLDRTTQNSVISTTSSDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 67 Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146 +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG Sbjct: 68 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 127 Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 D+++PVD+Y+PGCPP EA+I I L+KKI R Sbjct: 128 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 161 >gi|302833603|ref|XP_002948365.1| NADH:ubiquinone oxidoreductase subunit 10 [Volvox carteri f. nagariensis] gi|300266585|gb|EFJ50772.1| NADH:ubiquinone oxidoreductase subunit 10 [Volvox carteri f. nagariensis] Length = 164 Score = 217 bits (552), Expect = 7e-55, Method: Composition-based stats. Identities = 109/159 (68%), Positives = 127/159 (79%) Query: 26 FSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA 85 S+ + F+V+ VD ++ WAR GS+ MTFGLACCAVEMM A RYDL+RFG Sbjct: 1 MSKAVAAAKGMEFVVSKVDNVINWARAGSIWPMTFGLACCAVEMMHAGASRYDLDRFGII 60 Query: 86 PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRG 145 R SPRQSD MIVAGTLTNKMA ALR+VYDQMPEP++V+SMGSCANGGGYYHYSY+VVRG Sbjct: 61 FRPSPRQSDCMIVAGTLTNKMAPALRKVYDQMPEPKWVVSMGSCANGGGYYHYSYAVVRG 120 Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 CDR+VPVD+YVPGCPPTAE L+YG+L LQKKI R + Sbjct: 121 CDRVVPVDVYVPGCPPTAEGLLYGLLQLQKKIYRSKTAQ 159 >gi|284106847|ref|ZP_06386290.1| NADH-quinone oxidoreductase, B subunit [Candidatus Poribacteria sp. WGA-A3] gi|283830026|gb|EFC34302.1| NADH-quinone oxidoreductase, B subunit [Candidatus Poribacteria sp. WGA-A3] Length = 159 Score = 217 bits (552), Expect = 7e-55, Method: Composition-based stats. Identities = 87/148 (58%), Positives = 111/148 (75%), Gaps = 2/148 (1%) Query: 35 HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APRASPRQS 93 + T++D LV+W R +L MTFGLACCA+EM+ + RYD++RFG RASPRQS Sbjct: 9 DSNIITTNLDYLVSWCRKSALWPMTFGLACCAIEMIASVSSRYDIDRFGAGVFRASPRQS 68 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD 153 DVMIVAGT+ KMA +RR+YDQM EPRYVISMGSCA G +Y+ SYSVV+G D+IVPVD Sbjct: 69 DVMIVAGTVCRKMAPVIRRIYDQMAEPRYVISMGSCATSGNHYN-SYSVVQGVDQIVPVD 127 Query: 154 IYVPGCPPTAEALIYGILLLQKKIRRVG 181 +YV GCPP EAL+ ++ LQ+KI++ Sbjct: 128 VYVAGCPPRPEALLDALIKLQEKIQKEK 155 >gi|159161164|ref|YP_001542451.1| NADH-plastoquinone oxidoreductase subunit K [Ceratophyllum demersum] gi|148508447|gb|ABQ81454.1| NADH-plastoquinone oxidoreductase subunit K [Ceratophyllum demersum] gi|227481123|emb|CAP62502.1| photosystem II G protein [Ceratophyllum demersum] Length = 249 Score = 217 bits (552), Expect = 7e-55, Method: Composition-based stats. Identities = 68/149 (45%), Positives = 101/149 (67%), Gaps = 1/149 (0%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 T + T+ + L W+R SL + +G +CC +E R+D +R+G PR+SPRQ Sbjct: 33 TTKNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQ 92 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGCDRIVP 151 +D+++ AGT+T KMA +L R+Y+QMP+P+YVI+MG+C GG + SYS VRG D+++P Sbjct: 93 ADLILTAGTITMKMAPSLVRLYEQMPKPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIP 152 Query: 152 VDIYVPGCPPTAEALIYGILLLQKKIRRV 180 VD+Y+PGCPP EA+I I L+KK+ R Sbjct: 153 VDVYLPGCPPKPEAVIDAITKLRKKVSRE 181 >gi|218527901|sp|A8SEA7|NDHK_CERDE RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K Length = 228 Score = 217 bits (552), Expect = 7e-55, Method: Composition-based stats. Identities = 68/149 (45%), Positives = 101/149 (67%), Gaps = 1/149 (0%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 T + T+ + L W+R SL + +G +CC +E R+D +R+G PR+SPRQ Sbjct: 12 TTKNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQ 71 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGCDRIVP 151 +D+++ AGT+T KMA +L R+Y+QMP+P+YVI+MG+C GG + SYS VRG D+++P Sbjct: 72 ADLILTAGTITMKMAPSLVRLYEQMPKPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIP 131 Query: 152 VDIYVPGCPPTAEALIYGILLLQKKIRRV 180 VD+Y+PGCPP EA+I I L+KK+ R Sbjct: 132 VDVYLPGCPPKPEAVIDAITKLRKKVSRE 160 >gi|15027638|ref|NP_149372.1| NADH dehydrogenase subunit 10 [Tetrahymena thermophila] gi|15011474|gb|AAK77569.1|AF396436_9 NADH dehydrogenase subunit 10 [Tetrahymena thermophila] Length = 162 Score = 217 bits (552), Expect = 7e-55, Method: Composition-based stats. Identities = 97/145 (66%), Positives = 124/145 (85%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 ++VT ++ +V+WAR GS +TFGLACCAVEMM A++ RYD +RFG RA+PRQ+D+++ Sbjct: 5 YIVTPINAVVSWARQGSFWPLTFGLACCAVEMMHATVSRYDFDRFGVIFRATPRQADLIL 64 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGTLTNKMA LRR+Y+Q +P++V+SMGSCANGGGYYHYSYSVVRGC+RI+PVDIYVP Sbjct: 65 VAGTLTNKMAPGLRRLYEQTLDPKWVLSMGSCANGGGYYHYSYSVVRGCNRIIPVDIYVP 124 Query: 158 GCPPTAEALIYGILLLQKKIRRVGN 182 GCPPTAEAL++G+L LQK + R N Sbjct: 125 GCPPTAEALMFGVLQLQKSLYRQIN 149 >gi|254432198|ref|ZP_05045901.1| NADH dehydrogenase i chain b or ndhk [Cyanobium sp. PCC 7001] gi|197626651|gb|EDY39210.1| NADH dehydrogenase i chain b or ndhk [Cyanobium sp. PCC 7001] Length = 279 Score = 217 bits (552), Expect = 7e-55, Method: Composition-based stats. Identities = 70/145 (48%), Positives = 102/145 (70%), Gaps = 1/145 (0%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93 + ++T++D L WAR SL + +G ACC +E R+D +RFG PR+SPRQ+ Sbjct: 42 LSENVILTTLDDLHNWARLSSLWPLLYGTACCFIEFAALIGSRFDFDRFGLVPRSSPRQA 101 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGCDRIVPV 152 D++IVAGT+T KMA AL R+Y+QMPEP+YVI+MG+C GG + S + VRG D+++PV Sbjct: 102 DLLIVAGTVTMKMAPALVRLYEQMPEPKYVIAMGACTITGGMFSADSTTAVRGVDKLIPV 161 Query: 153 DIYVPGCPPTAEALIYGILLLQKKI 177 D+Y+PGCPP EA+ ++ L+KK+ Sbjct: 162 DLYLPGCPPRPEAIFDAVIKLRKKV 186 >gi|260912210|ref|ZP_05918762.1| NADH dehydrogenase I [Prevotella sp. oral taxon 472 str. F0295] gi|260633644|gb|EEX51782.1| NADH dehydrogenase I [Prevotella sp. oral taxon 472 str. F0295] Length = 207 Score = 217 bits (552), Expect = 7e-55, Method: Composition-based stats. Identities = 75/161 (46%), Positives = 111/161 (68%), Gaps = 3/161 (1%) Query: 21 KVDADFSRISSEITHKGF--LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78 K + +I +E+ G +V S+DQ + W R+ SL +TF +CC +E M RYD Sbjct: 17 KDNDTLEQIMNELHEGGVNVVVGSLDQAINWGRSNSLWSLTFATSCCGIEFMSVGCARYD 76 Query: 79 LERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137 RFGF R SPRQ+D+++ AGT+TNKMA ++R+YD+M +P+YVI++G CA GG + Sbjct: 77 FARFGFEVTRNSPRQADLIMCAGTITNKMAPVMKRLYDEMADPKYVIAVGGCAISGGPFK 136 Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 SY VVRG + IVPVD+++PGCPP EA++YG++ LQ+K++ Sbjct: 137 SSYHVVRGIEEIVPVDVFIPGCPPRPEAILYGMMQLQRKVK 177 >gi|33864158|ref|NP_895718.1| NADH dehydrogenase subunit B [Prochlorococcus marinus str. MIT 9313] gi|81576854|sp|Q7V4Q5|NDHK_PROMM RecName: Full=NAD(P)H-quinone oxidoreductase subunit K; AltName: Full=NAD(P)H dehydrogenase I subunit K; AltName: Full=NDH-1 subunit K; Short=NDH-K gi|33635742|emb|CAE22067.1| putative respiratory-chain NADH dehydrogenase subunit [Prochlorococcus marinus str. MIT 9313] Length = 250 Score = 217 bits (552), Expect = 8e-55, Method: Composition-based stats. Identities = 71/145 (48%), Positives = 102/145 (70%), Gaps = 1/145 (0%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93 + ++TS+D L WAR SL + +G ACC +E R+D +RFG PR+SPRQ+ Sbjct: 30 LSENIILTSLDDLHNWARLSSLWPLLYGTACCFIEFAALIGSRFDFDRFGLVPRSSPRQA 89 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGCDRIVPV 152 D++IVAGT+T KMA AL R+Y+QMPEP+YVI+MG+C GG + S + VRG D+++PV Sbjct: 90 DLLIVAGTVTMKMAPALVRLYEQMPEPKYVIAMGACTITGGMFSADSTTAVRGVDKLIPV 149 Query: 153 DIYVPGCPPTAEALIYGILLLQKKI 177 D+Y+PGCPP EA+ ++ L+KK+ Sbjct: 150 DLYLPGCPPRPEAIFDAVIKLRKKV 174 >gi|309322102|ref|YP_003933918.1| NADH-plastoquinone oxidoreductase subunit K [Erodium texanum] gi|197131352|gb|ACH47194.1| NADH-plastoquinone oxidoreductase subunit K [Erodium texanum] gi|300069195|gb|ADJ66317.1| NADH-plastoquinone oxidoreductase subunit K [Erodium texanum] Length = 227 Score = 217 bits (552), Expect = 8e-55, Method: Composition-based stats. Identities = 72/150 (48%), Positives = 101/150 (67%), Gaps = 1/150 (0%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93 T L T+ L W+R SL + +G +CC +E R+D +R+G PR+SPRQ+ Sbjct: 13 TQNSVLSTTSKDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 72 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGCDRIVPV 152 D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++PV Sbjct: 73 DLVLTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 132 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGN 182 D+Y+PGCPP EA+I I L+KKI R N Sbjct: 133 DVYLPGCPPKPEAVIDAITKLRKKISREIN 162 >gi|133712065|gb|ABO36708.1| photosystem II G protein [Populus trichocarpa] Length = 237 Score = 217 bits (552), Expect = 8e-55, Method: Composition-based stats. Identities = 69/154 (44%), Positives = 101/154 (65%), Gaps = 1/154 (0%) Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87 + T + T+ + L W+R SL + +G +CC +E R+D +R+G PR Sbjct: 19 PLLDRTTPISVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 78 Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146 +SPRQ+D+++ AGT+T KMA +L R+Y+QMPE +YVI+MG+C GG + SYS VRG Sbjct: 79 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEQKYVIAMGACTITGGMFSTDSYSTVRGV 138 Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 D+++PVD+Y+PGCPP EA+I I L+KKI R Sbjct: 139 DKLIPVDVYLPGCPPKPEAIIDAITKLRKKISRE 172 >gi|296936675|gb|ADH94347.1| NADH-plastoquinone oxidoreductase subunit K [Syzygium cumini] Length = 284 Score = 217 bits (552), Expect = 8e-55, Method: Composition-based stats. Identities = 70/154 (45%), Positives = 103/154 (66%), Gaps = 1/154 (0%) Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87 + + T + T+ + L W+R SL + +G +CC +E R+D +R+G PR Sbjct: 66 PLLARTTQNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 125 Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146 +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG Sbjct: 126 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 185 Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 D+++PVD+Y+PGCPP EA+I I L+KKI R Sbjct: 186 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKIARE 219 >gi|296133536|ref|YP_003640783.1| NADH-quinone oxidoreductase, B subunit [Thermincola sp. JR] gi|296032114|gb|ADG82882.1| NADH-quinone oxidoreductase, B subunit [Thermincola potens JR] Length = 170 Score = 217 bits (552), Expect = 8e-55, Method: Composition-based stats. Identities = 79/154 (51%), Positives = 107/154 (69%), Gaps = 1/154 (0%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89 E+ ++++V+ W R+ SL +TFGLACCA+EMM A+ RYDL RFG R S Sbjct: 10 DELVRNNVVLSTVEAAFNWCRSRSLWPLTFGLACCAIEMMAAADTRYDLARFGSEVFRPS 69 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQ D+MI+AGT+T KM + R+Y+QM EP+YV++MGSCA GG + SY+VV G D Sbjct: 70 PRQCDLMIIAGTITKKMQPVVLRLYEQMAEPKYVLAMGSCAISGGPFVDSYNVVLGGDTF 129 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 +PVD+YVPGCPP EALIYGI+ L++K+ + Sbjct: 130 LPVDVYVPGCPPRPEALIYGIMQLREKVANPKKI 163 >gi|220904929|ref|YP_002480241.1| NADH-quinone oxidoreductase subunit B [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|238065121|sp|B8J1D6|NUOB_DESDA RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|219869228|gb|ACL49563.1| NADH-quinone oxidoreductase, B subunit [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 183 Score = 217 bits (552), Expect = 8e-55, Method: Composition-based stats. Identities = 83/145 (57%), Positives = 106/145 (73%), Gaps = 1/145 (0%) Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVM 96 G ++ ++ LV W R GS+ +TFGLACCA+EMM +DL+RFG RASPRQ+D M Sbjct: 33 GAVIGPLNALVNWGRAGSIWPVTFGLACCAIEMMATGAAHHDLDRFGIIFRASPRQADCM 92 Query: 97 IVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV 156 +VAGTL+ KMA LRRVYDQMPEPRYV++MGSCA GG + SY+V +G D++VPVD+YV Sbjct: 93 VVAGTLSKKMAPVLRRVYDQMPEPRYVLAMGSCACSGGLF-QSYAVTQGVDQVVPVDVYV 151 Query: 157 PGCPPTAEALIYGILLLQKKIRRVG 181 PGCPP EAL G + LQ+ I + Sbjct: 152 PGCPPRPEALFDGFIRLQEIINKEQ 176 >gi|209525746|ref|ZP_03274282.1| NADH-quinone oxidoreductase, B subunit [Arthrospira maxima CS-328] gi|209493719|gb|EDZ94038.1| NADH-quinone oxidoreductase, B subunit [Arthrospira maxima CS-328] Length = 241 Score = 217 bits (552), Expect = 8e-55, Method: Composition-based stats. Identities = 72/168 (42%), Positives = 108/168 (64%), Gaps = 2/168 (1%) Query: 11 ISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMM 70 S + + +++ E++ ++T+VD L WAR SL + +G ACC +E Sbjct: 3 TQSPSPNTTIINPIERPQVTEELSE-NVILTTVDDLYNWARLSSLWPLLYGTACCFIEFA 61 Query: 71 QASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCA 130 R+D +RFG PR+SPRQ+D++I AGT+T K + L R+Y+QMPEP+YVI+MG+C Sbjct: 62 GLIGSRFDFDRFGLVPRSSPRQADLLITAGTITMKYSPMLVRLYEQMPEPKYVIAMGACT 121 Query: 131 NGGGYYH-YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 GG + S + VRG D+++PVD+Y+PGCPP EA+I I+ L+KKI Sbjct: 122 VTGGMFSMDSPTAVRGVDKLIPVDVYIPGCPPRPEAIIDAIIKLRKKI 169 >gi|114329866|ref|YP_740769.1| NADH dehydrogenase subunit 10 [Tetrahymena paravorax] gi|114150099|gb|ABI51678.1| NADH dehydrogenase subunit 10 [Tetrahymena paravorax] Length = 162 Score = 217 bits (552), Expect = 8e-55, Method: Composition-based stats. Identities = 98/145 (67%), Positives = 124/145 (85%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 ++VT V+ +V+WAR GS +TFGLACCAVEMM A++ RYD +RFG RA+PRQ+D+++ Sbjct: 5 YIVTPVNAVVSWARQGSFWPLTFGLACCAVEMMHATVSRYDFDRFGVIFRATPRQADLIL 64 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGTLTNKMA LRR+Y+Q +P++V+SMGSCANGGGYYHYSYSVVRGC+RI+PVDIYVP Sbjct: 65 VAGTLTNKMAPGLRRLYEQTLDPKWVLSMGSCANGGGYYHYSYSVVRGCNRIIPVDIYVP 124 Query: 158 GCPPTAEALIYGILLLQKKIRRVGN 182 GCPPTAEAL++G+L LQK + R N Sbjct: 125 GCPPTAEALMFGVLQLQKSLYRQIN 149 >gi|110227083|ref|YP_665562.1| NADH dehydrogenase subunit K [Populus alba] gi|122243414|sp|Q14FF3|NDHK_POPAL RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K gi|109945521|dbj|BAE97209.1| NADH dehydrogenase subunit K [Populus alba] Length = 225 Score = 216 bits (551), Expect = 9e-55, Method: Composition-based stats. Identities = 69/154 (44%), Positives = 101/154 (65%), Gaps = 1/154 (0%) Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87 + T + T+ + L W+R SL + +G +CC +E R+D +R+G PR Sbjct: 7 PLLDRTTPISVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66 Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146 +SPRQ+D+++ AGT+T KMA +L R+Y+QMPE +YVI+MG+C GG + SYS VRG Sbjct: 67 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEQKYVIAMGACTITGGMFSTDSYSTVRGV 126 Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 D+++PVD+Y+PGCPP EA+I I L+KKI R Sbjct: 127 DKLIPVDVYLPGCPPKPEAIIDAITKLRKKISRE 160 >gi|156598283|gb|ABU85403.1| NADH-plastoquinone oxidoreductase subunit K [Ginkgo biloba] Length = 288 Score = 216 bits (551), Expect = 9e-55, Method: Composition-based stats. Identities = 71/155 (45%), Positives = 104/155 (67%), Gaps = 1/155 (0%) Query: 27 SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP 86 S + + T + T+ + + WAR SL + +G +CC++E R+D +R+G P Sbjct: 64 SPLPNRTTPNSVISTTPNDMSNWARLTSLWPLLYGTSCCSIEFASLIGSRFDFDRYGLVP 123 Query: 87 RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRG 145 R+SPRQ+D++I AGT+T KMA +L R+Y+QMPEPRYVI+MG+C GG + SYS VRG Sbjct: 124 RSSPRQADLIITAGTVTMKMAPSLVRLYEQMPEPRYVIAMGACTITGGMFSTDSYSTVRG 183 Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 D+++PVD+Y+PGCPP E +I I L++KI R Sbjct: 184 VDKLIPVDVYLPGCPPKPEVIIDAITKLREKIARE 218 >gi|218527950|sp|Q0IDJ3|NDHK_SYNS3 RecName: Full=NAD(P)H-quinone oxidoreductase subunit K; AltName: Full=NAD(P)H dehydrogenase I subunit K; AltName: Full=NDH-1 subunit K; Short=NDH-K Length = 253 Score = 216 bits (551), Expect = 9e-55, Method: Composition-based stats. Identities = 72/155 (46%), Positives = 105/155 (67%), Gaps = 1/155 (0%) Query: 24 ADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFG 83 A+ S + + ++TS+D L WAR SL + +G ACC +E R+D +RFG Sbjct: 28 AEGSPTVTNDLSENVILTSLDDLHNWARLSSLWPLLYGTACCFIEFAALLGSRFDFDRFG 87 Query: 84 FAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSV 142 PR+SPRQ+D++IVAGT+T KM AL R+Y+QMPEP+YVI+MG+C GG + S + Sbjct: 88 LVPRSSPRQADLLIVAGTVTMKMGPALVRLYEQMPEPKYVIAMGACTITGGMFSADSTTA 147 Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 VRG D+++PVD+Y+PGCPP EA+ ++ L+KK+ Sbjct: 148 VRGVDKLIPVDLYLPGCPPRPEAIFDAVIKLRKKV 182 >gi|288818716|ref|YP_003433064.1| NADH dehydrogenase chain B [Hydrogenobacter thermophilus TK-6] gi|288788116|dbj|BAI69863.1| NADH dehydrogenase chain B [Hydrogenobacter thermophilus TK-6] gi|308752303|gb|ADO45786.1| NADH-quinone oxidoreductase, B subunit [Hydrogenobacter thermophilus TK-6] Length = 179 Score = 216 bits (551), Expect = 9e-55, Method: Composition-based stats. Identities = 79/152 (51%), Positives = 114/152 (75%), Gaps = 1/152 (0%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 + GF++T+VD+L+ W R +L +T GLACCA+EMM + R+DL+R G RASPRQ Sbjct: 4 LNSNGFVITTVDELLRWGRRNALWPVTIGLACCAIEMMHTAASRFDLDRLGVIFRASPRQ 63 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 +DV+IVAGT+ NK+A L+ +++QMP+P++ I+MG CA+ GG + +Y+ ++G DRI+PV Sbjct: 64 ADVLIVAGTVVNKVAPMLKLIWEQMPDPKWCITMGGCASAGGPFP-TYATLQGMDRIIPV 122 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 D+Y+PGCPP + LIYGIL LQKKI+ G K Sbjct: 123 DVYIPGCPPHPQGLIYGILQLQKKIKEKGINK 154 >gi|114329820|ref|YP_740724.1| NADH dehydrogenase subunit 10 [Tetrahymena malaccensis] gi|114150053|gb|ABI51633.1| NADH dehydrogenase subunit 10 [Tetrahymena malaccensis] Length = 162 Score = 216 bits (551), Expect = 9e-55, Method: Composition-based stats. Identities = 97/145 (66%), Positives = 124/145 (85%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 ++VT ++ +V+WAR GS +TFGLACCAVEMM A++ RYD +RFG RA+PRQ+D+++ Sbjct: 5 YIVTPINAVVSWARQGSFWPLTFGLACCAVEMMHATVSRYDFDRFGVIFRATPRQADLIL 64 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGTLTNKMA LRR+Y+Q +P++V+SMGSCANGGGYYHYSYSVVRGC+RI+PVDIYVP Sbjct: 65 VAGTLTNKMAPGLRRLYEQTLDPKWVLSMGSCANGGGYYHYSYSVVRGCNRIIPVDIYVP 124 Query: 158 GCPPTAEALIYGILLLQKKIRRVGN 182 GCPPTAEAL++G+L LQK + R N Sbjct: 125 GCPPTAEALMFGVLQLQKSLYRQIN 149 >gi|11466261|ref|NP_049576.1| NADH dehydrogenase subunit 10 [Tetrahymena pyriformis] gi|5306137|gb|AAD41921.1|AF160864_9 NADH dehydrogenase subunit 10 [Tetrahymena pyriformis] Length = 162 Score = 216 bits (551), Expect = 1e-54, Method: Composition-based stats. Identities = 98/145 (67%), Positives = 124/145 (85%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 ++VT V+ +V+WAR GS +TFGLACCAVEMM A++ RYD +RFG RA+PRQ+D+++ Sbjct: 5 YIVTPVNAVVSWARQGSFWPLTFGLACCAVEMMHATVSRYDFDRFGVIFRATPRQADLIL 64 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGTLTNKMA LRR+Y+Q +P++V+SMGSCANGGGYYHYSYSVVRGC+RI+PVDIYVP Sbjct: 65 VAGTLTNKMAPGLRRLYEQTLDPKWVLSMGSCANGGGYYHYSYSVVRGCNRIIPVDIYVP 124 Query: 158 GCPPTAEALIYGILLLQKKIRRVGN 182 GCPPTAEAL++G+L LQK + R N Sbjct: 125 GCPPTAEALMFGVLQLQKSLYRQVN 149 >gi|258592365|emb|CBE68674.1| NADH-ubiquinone oxidoreductase 20 kDa subunit (NADH dehydrogenase subunit 10) [NC10 bacterium 'Dutch sediment'] Length = 175 Score = 216 bits (551), Expect = 1e-54, Method: Composition-based stats. Identities = 85/153 (55%), Positives = 109/153 (71%), Gaps = 2/153 (1%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APRASPRQ 92 + T+V+ L WAR S MTFGLACCA+EMM A R+DL+R G R SPRQ Sbjct: 9 ADPNVITTTVEWLFNWARKSSPWPMTFGLACCAIEMMAAGASRFDLDRLGAGVFRPSPRQ 68 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGCDRIVP 151 SDVMIVAGT+T KMA ++ +Y+QMP+P++VI+MG+CA GG + + +Y VV+G D +VP Sbjct: 69 SDVMIVAGTVTEKMAPRIKTLYEQMPDPKWVIAMGACAISGGPFYYDAYHVVKGVDLLVP 128 Query: 152 VDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 VD+YVPGCPPT EALI+GIL LQ +I R K Sbjct: 129 VDVYVPGCPPTPEALIFGILTLQDQIMRGERAK 161 >gi|94970385|ref|YP_592433.1| NADH-quinone oxidoreductase, B subunit [Candidatus Koribacter versatilis Ellin345] gi|238065024|sp|Q1IL91|NUOB2_ACIBL RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName: Full=NADH dehydrogenase I subunit B 2; AltName: Full=NDH-1 subunit B 2 gi|94552435|gb|ABF42359.1| NADH dehydrogenase subunit B [Candidatus Koribacter versatilis Ellin345] Length = 202 Score = 216 bits (551), Expect = 1e-54, Method: Composition-based stats. Identities = 84/155 (54%), Positives = 113/155 (72%), Gaps = 2/155 (1%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89 K FL++SVD + WAR S+ MTFGLACCA+EM+ AS RYD+ RFG R S Sbjct: 5 ENKFEKNFLLSSVDYVFNWARKSSVWPMTFGLACCAIEMITASTARYDIARFGSEVFRPS 64 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQSD+MIVAGT+T KMA ++R+Y+QMPEP++V++MG+CA+ GG ++ +Y+ ++G D+I Sbjct: 65 PRQSDLMIVAGTVTLKMAPVVQRIYEQMPEPKWVMAMGACASVGGPFN-TYATLQGVDKI 123 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 VPVD+YV GCPP E L YG+L LQ KI + K Sbjct: 124 VPVDVYVVGCPPRPENLFYGLLKLQDKIDHMTLAK 158 >gi|156598545|gb|ABU85530.1| NADH-plastoquinone oxidoreductase subunit K [Passiflora biflora] Length = 237 Score = 216 bits (551), Expect = 1e-54, Method: Composition-based stats. Identities = 71/153 (46%), Positives = 101/153 (66%), Gaps = 1/153 (0%) Query: 29 ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88 + T + T+ + L WAR SL + +G +CC +E R+D +R+G PR+ Sbjct: 15 VLDRTTPISVISTTPNDLSNWARLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRS 74 Query: 89 SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGCD 147 SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D Sbjct: 75 SPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVD 134 Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 +++PVD Y+PGCPP EA+I I L+KKI R Sbjct: 135 KLIPVDAYLPGCPPKPEAVIDAITKLRKKISRE 167 >gi|114329910|ref|YP_740813.1| NADH dehydrogenase subunit 10 [Tetrahymena pigmentosa] gi|114150143|gb|ABI51721.1| NADH dehydrogenase subunit 10 [Tetrahymena pigmentosa] Length = 162 Score = 216 bits (550), Expect = 1e-54, Method: Composition-based stats. Identities = 98/145 (67%), Positives = 124/145 (85%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 ++VT V+ +V+WAR GS +TFGLACCAVEMM A++ RYD +RFG RA+PRQ+D+++ Sbjct: 5 YIVTPVNAVVSWARQGSFWPLTFGLACCAVEMMHATVSRYDFDRFGVIFRATPRQADLIL 64 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGTLTNKMA LRR+Y+Q +P++V+SMGSCANGGGYYHYSYSVVRGC+RI+PVDIYVP Sbjct: 65 VAGTLTNKMAPGLRRLYEQTLDPKWVLSMGSCANGGGYYHYSYSVVRGCNRIIPVDIYVP 124 Query: 158 GCPPTAEALIYGILLLQKKIRRVGN 182 GCPPTAEAL++G+L LQK + R N Sbjct: 125 GCPPTAEALMFGVLQLQKSLYRQIN 149 >gi|300782452|ref|YP_003762743.1| NADH dehydrogenase I subunit B [Amycolatopsis mediterranei U32] gi|299791966|gb|ADJ42341.1| NADH dehydrogenase I subunit B [Amycolatopsis mediterranei U32] Length = 182 Score = 216 bits (550), Expect = 1e-54, Method: Composition-based stats. Identities = 81/149 (54%), Positives = 104/149 (69%), Gaps = 2/149 (1%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89 E G L+ S++ LV WAR SL TFGLACCA+EMM RYD+ RFG A+ Sbjct: 4 EEKLPNGILLASLEGLVNWARKNSLWPATFGLACCAIEMMTVGGSRYDIARFGMERFSAT 63 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQ+D+MIVAG +T KMA LR++YDQM EPR+V++MG CA+ GG ++ Y+VV+G D I Sbjct: 64 PRQADLMIVAGRVTQKMAPVLRQIYDQMAEPRWVLAMGVCASSGGMFNN-YAVVQGVDHI 122 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIR 178 VPVD+Y+PGCPP E L+ IL L KI+ Sbjct: 123 VPVDMYLPGCPPRPEMLLDAILKLHAKIQ 151 >gi|16330876|ref|NP_441604.1| NADH dehydrogenase subunit B [Synechocystis sp. PCC 6803] gi|131406|sp|P19050|NDHK1_SYNY3 RecName: Full=NAD(P)H-quinone oxidoreductase subunit K 1; AltName: Full=NAD(P)H dehydrogenase I subunit K 1; AltName: Full=NDH-1 subunit K 1; Short=NDH-K 1; Flags: Precursor gi|48047|emb|CAA35485.1| unnamed protein product [Synechocystis sp. PCC 6803] gi|1653370|dbj|BAA18284.1| NADH dehydrogenase subunit; NdhK [Synechocystis sp. PCC 6803] Length = 248 Score = 216 bits (550), Expect = 1e-54, Method: Composition-based stats. Identities = 73/178 (41%), Positives = 114/178 (64%), Gaps = 3/178 (1%) Query: 1 MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTF 60 M N + ++ + A S+++ +++ ++T+VD L WA+ SL + + Sbjct: 1 MSPNPANPTDLERVATAKI-LNPASRSQVTQDLSE-NVILTTVDDLYNWAKLSSLWPLLY 58 Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 G ACC +E R+D +RFG PR+SPRQ+D++I AGT+T KMA AL R+Y++MPEP Sbjct: 59 GTACCFIEFAALIGSRFDFDRFGLVPRSSPRQADLIITAGTITMKMAPALVRLYEEMPEP 118 Query: 121 RYVISMGSCANGGGYY-HYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 +YVI+MG+C GG + S + VRG D+++PVD+Y+PGCPP EA+ I+ L+KK+ Sbjct: 119 KYVIAMGACTITGGMFSSDSTTAVRGVDKLIPVDVYIPGCPPRPEAIFDAIIKLRKKV 176 >gi|73670849|ref|YP_306864.1| F420H2 dehydrogenase subunit B [Methanosarcina barkeri str. Fusaro] gi|72398011|gb|AAZ72284.1| F420H2 dehydrogenase subunit B [Methanosarcina barkeri str. Fusaro] Length = 184 Score = 216 bits (550), Expect = 1e-54, Method: Composition-based stats. Identities = 73/179 (40%), Positives = 111/179 (62%), Gaps = 3/179 (1%) Query: 6 VNQKIISGQSSCSLEKVDADFSRISSEITHKGFLV-TSVDQLVTWARTGSLMWMTFGLAC 64 V +K S S E++ + S+ I+ FL T V ++ W R SL +MT + C Sbjct: 4 VKEKKTSKPYETSEEEIPGVITTTSNAISE--FLKKTKVQDIINWGRKNSLWFMTQPMGC 61 Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C VEM+ YD +RFG PR SPRQ+DVM+++G +T K AL+R+++QMP P++VI Sbjct: 62 CGVEMIAMGCAHYDTDRFGIIPRNSPRQADVMLISGYVTKKYLPALKRLWEQMPSPKWVI 121 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 + G C+ GG ++ SYS V+ D I P+D++VPGCPP EA++ G + LQ+KI+ ++ Sbjct: 122 AFGDCSISGGPFYESYSTVQNIDEIFPIDVFVPGCPPRPEAMLQGFVELQEKIKAKKDL 180 >gi|222054362|ref|YP_002536724.1| NADH dehydrogenase I, D subunit [Geobacter sp. FRC-32] gi|221563651|gb|ACM19623.1| NADH dehydrogenase I, D subunit [Geobacter sp. FRC-32] Length = 792 Score = 216 bits (550), Expect = 1e-54, Method: Composition-based stats. Identities = 79/144 (54%), Positives = 106/144 (73%), Gaps = 2/144 (1%) Query: 36 KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSD 94 L+T++D L+ W R SL M FGL+CC VEMM + RYD+ RFG R +PR++D Sbjct: 9 DNILLTNLDDLINWGRANSLWPMFFGLSCCFVEMMTSFTSRYDISRFGAEVLRGTPREAD 68 Query: 95 VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154 +M++AGT+ KMA ++ +Y+QM EPR+VISMGSCAN GG Y YSVV+G ++I+PVD+ Sbjct: 69 LMVIAGTVFKKMAPSILTLYEQMAEPRWVISMGSCANSGGMY-DVYSVVQGVNQILPVDV 127 Query: 155 YVPGCPPTAEALIYGILLLQKKIR 178 YVPGCPP EA + G+LLLQ+KIR Sbjct: 128 YVPGCPPRPEAFMQGLLLLQEKIR 151 >gi|221633754|ref|YP_002522980.1| NADH dehydrogenase i subunit B [Thermomicrobium roseum DSM 5159] gi|238065220|sp|B9L170|NUOB_THERP RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|221156029|gb|ACM05156.1| nadh dehydrogenase i, b subunit [Thermomicrobium roseum DSM 5159] Length = 185 Score = 216 bits (550), Expect = 1e-54, Method: Composition-based stats. Identities = 90/157 (57%), Positives = 121/157 (77%), Gaps = 2/157 (1%) Query: 29 ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDL-ERFGFAPR 87 +S+ +H + T+ D L +WAR SL W+ FGLACCA+EM+ ++MPR+DL ERFG R Sbjct: 3 MSAAQSHPNIITTTADWLFSWARRSSLWWLQFGLACCAIEMISSAMPRFDLAERFGMLYR 62 Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCD 147 ASPRQ+D+MIVAGT+T KMA +R++YDQM +P++VISMGSCAN GG + +Y+VV+G D Sbjct: 63 ASPRQADLMIVAGTVTKKMAPVVRQLYDQMADPKWVISMGSCANVGGPF-DTYAVVQGVD 121 Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 +++PVDIYVPGCPP EAL YG+L LQ +I R +K Sbjct: 122 QVIPVDIYVPGCPPVPEALYYGVLELQNRIIRYERLK 158 >gi|189162275|ref|YP_001936521.1| NADH dehydrogenase subunit K [Fagopyrum esculentum subsp. ancestrale] gi|166065361|gb|ABY79736.1| NADH dehydrogenase subunit K [Fagopyrum esculentum subsp. ancestrale] Length = 285 Score = 216 bits (550), Expect = 1e-54, Method: Composition-based stats. Identities = 70/146 (47%), Positives = 101/146 (69%), Gaps = 1/146 (0%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 IT + T+ + L W+R SL + +G +CC +E R+D +R+G PR+SPRQ Sbjct: 72 ITPNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQ 131 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGCDRIVP 151 +D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++P Sbjct: 132 ADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIP 191 Query: 152 VDIYVPGCPPTAEALIYGILLLQKKI 177 VD+Y+PGCPP EA+I I L+KKI Sbjct: 192 VDVYLPGCPPKPEAVIDAITKLRKKI 217 >gi|159485096|ref|XP_001700585.1| NADH:ubiquinone oxidoreductase subunit 10 [Chlamydomonas reinhardtii] gi|34328788|gb|AAQ63698.1| NADH:ubiquinone oxidoreductase subunit 10 [Chlamydomonas reinhardtii] gi|158272225|gb|EDO98029.1| NADH:ubiquinone oxidoreductase subunit 10 [Chlamydomonas reinhardtii] Length = 164 Score = 216 bits (550), Expect = 1e-54, Method: Composition-based stats. Identities = 108/147 (73%), Positives = 124/147 (84%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 F+V+ VD +V WAR GS+ MTFGLACCAVEMM A RYDL+R+G R SPRQSD MI Sbjct: 13 FVVSKVDNVVNWARAGSIWPMTFGLACCAVEMMHAGASRYDLDRYGIIFRPSPRQSDAMI 72 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGTLTNKMA ALR+VYDQMPEP++V+SMGSCANGGGYYHYSY+VVRGCDR+VPVD+YVP Sbjct: 73 VAGTLTNKMAPALRKVYDQMPEPKWVVSMGSCANGGGYYHYSYAVVRGCDRVVPVDVYVP 132 Query: 158 GCPPTAEALIYGILLLQKKIRRVGNVK 184 GCPPTAE L+YG+L LQKKI R + Sbjct: 133 GCPPTAEGLLYGLLQLQKKIYRSKTTQ 159 >gi|325003723|ref|ZP_08124835.1| NADH dehydrogenase subunit B [Pseudonocardia sp. P1] Length = 235 Score = 216 bits (550), Expect = 1e-54, Method: Composition-based stats. Identities = 84/148 (56%), Positives = 108/148 (72%), Gaps = 2/148 (1%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89 E G L+T+V++LV W R SL TFGLACCA+EMM PRYDL RFG RAS Sbjct: 4 EENLPSGVLLTNVEKLVNWTRKSSLWPATFGLACCAIEMMTTGAPRYDLARFGMEVFRAS 63 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQ+D+MIVAG ++NKMA LR++YDQMPEPR+V++MG CA+ GG ++ Y++V+G D + Sbjct: 64 PRQADLMIVAGRVSNKMAPVLRQIYDQMPEPRWVLAMGVCASSGGMFNN-YAIVQGVDHV 122 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKI 177 VPVD+Y+PGCPP E LI IL + KI Sbjct: 123 VPVDMYLPGCPPRPEMLIDAILKIHAKI 150 >gi|154795218|ref|YP_001109505.2| NADH dehydrogenase subunit K [Populus trichocarpa] gi|224173986|ref|XP_002339836.1| predicted protein [Populus trichocarpa] gi|218527945|sp|A4GYR4|NDHK_POPTR RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K gi|222832334|gb|EEE70811.1| predicted protein [Populus trichocarpa] Length = 225 Score = 216 bits (550), Expect = 1e-54, Method: Composition-based stats. Identities = 69/154 (44%), Positives = 101/154 (65%), Gaps = 1/154 (0%) Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87 + T + T+ + L W+R SL + +G +CC +E R+D +R+G PR Sbjct: 7 PLLDRTTPISVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66 Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146 +SPRQ+D+++ AGT+T KMA +L R+Y+QMPE +YVI+MG+C GG + SYS VRG Sbjct: 67 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEQKYVIAMGACTITGGMFSTDSYSTVRGV 126 Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 D+++PVD+Y+PGCPP EA+I I L+KKI R Sbjct: 127 DKLIPVDVYLPGCPPKPEAIIDAITKLRKKISRE 160 >gi|197131354|gb|ACH47195.1| NADH-plastoquinone oxidoreductase subunit K [Geranium carolinianum] Length = 225 Score = 215 bits (549), Expect = 1e-54, Method: Composition-based stats. Identities = 72/150 (48%), Positives = 102/150 (68%), Gaps = 1/150 (0%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93 T L T+ + L W+R SL + +G +CC +E R+D +R+G PR+SPRQ+ Sbjct: 13 TPNSVLSTTPNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 72 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGCDRIVPV 152 D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++PV Sbjct: 73 DLVLTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 132 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGN 182 D+Y+PGCPP EA+I I L+KKI R N Sbjct: 133 DVYLPGCPPKPEAVIDAITKLRKKISREIN 162 >gi|139389805|ref|YP_001123466.1| NADH dehydrogenase subunit K [Crucihimalaya wallichii] gi|218527886|sp|A4QKT5|NDHK_CRUWA RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K gi|134286667|dbj|BAF50290.1| photosystem II G protein [Crucihimalaya wallichii] Length = 225 Score = 215 bits (549), Expect = 2e-54, Method: Composition-based stats. Identities = 69/154 (44%), Positives = 102/154 (66%), Gaps = 1/154 (0%) Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87 + T + T+++ L W+ SL + +G +CC +E R+D +R+G PR Sbjct: 7 PVLDRTTKNSVISTTLNDLSNWSELSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66 Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146 +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG Sbjct: 67 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126 Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 D+++PVD+Y+PGCPP EA+I I L+KKI R Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKIARE 160 >gi|113954408|ref|YP_729479.1| NADH dehydrogenase subunit B [Synechococcus sp. CC9311] gi|113881759|gb|ABI46717.1| NADH dehydrogenase I chain B or NdhK [Synechococcus sp. CC9311] Length = 259 Score = 215 bits (549), Expect = 2e-54, Method: Composition-based stats. Identities = 72/155 (46%), Positives = 105/155 (67%), Gaps = 1/155 (0%) Query: 24 ADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFG 83 A+ S + + ++TS+D L WAR SL + +G ACC +E R+D +RFG Sbjct: 34 AEGSPTVTNDLSENVILTSLDDLHNWARLSSLWPLLYGTACCFIEFAALLGSRFDFDRFG 93 Query: 84 FAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSV 142 PR+SPRQ+D++IVAGT+T KM AL R+Y+QMPEP+YVI+MG+C GG + S + Sbjct: 94 LVPRSSPRQADLLIVAGTVTMKMGPALVRLYEQMPEPKYVIAMGACTITGGMFSADSTTA 153 Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 VRG D+++PVD+Y+PGCPP EA+ ++ L+KK+ Sbjct: 154 VRGVDKLIPVDLYLPGCPPRPEAIFDAVIKLRKKV 188 >gi|154148789|ref|YP_001405790.1| NADH dehydrogenase subunit B [Campylobacter hominis ATCC BAA-381] gi|218527983|sp|A7HZU9|NUOB_CAMHC RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|153804798|gb|ABS51805.1| NADH-quinone oxidoreductase, b subunit [Campylobacter hominis ATCC BAA-381] Length = 169 Score = 215 bits (549), Expect = 2e-54, Method: Composition-based stats. Identities = 83/147 (56%), Positives = 111/147 (75%), Gaps = 1/147 (0%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 ++T++D+LV W R+ SL M +GLACCA+EMM RYD +RFG RAS +QS+VM+ Sbjct: 16 VVLTTIDKLVNWGRSNSLWAMNYGLACCAIEMMATGASRYDFDRFGTIFRASAKQSEVMV 75 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 +AGTL+ K A RR+YD MPEP++VISMGSCAN GG ++ +Y+VV+GCDRI+PVDIY+P Sbjct: 76 IAGTLSKKHAELARRLYDAMPEPKWVISMGSCANTGGMFN-TYAVVQGCDRIIPVDIYLP 134 Query: 158 GCPPTAEALIYGILLLQKKIRRVGNVK 184 GC P E L Y +++LQKKIRR + Sbjct: 135 GCAPRPETLQYALMILQKKIRREKANR 161 >gi|5650745|emb|CAB51630.1| putative NADH-ubiquinone oxidoreductase subunit [Sinorhizobium meliloti] Length = 167 Score = 215 bits (549), Expect = 2e-54, Method: Composition-based stats. Identities = 82/153 (53%), Positives = 114/153 (74%), Gaps = 1/153 (0%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP 90 ++ L T+ D +++W+R +L TFG+ACCA+EM+ A RYDL+RFG R SP Sbjct: 5 NDAIRDSVLFTTADSIISWSRRSALWPETFGIACCAIEMISAGCARYDLDRFGVVFRPSP 64 Query: 91 RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150 RQSDVMI+AGT+T K A +RR+YDQMPEPR+VI+MG+CA GG Y+ +Y+VV+G + V Sbjct: 65 RQSDVMIIAGTVTRKFAPVVRRLYDQMPEPRWVIAMGTCAISGGVYN-TYAVVQGSETFV 123 Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 PVD++VPGCPP EAL++G LLLQ+KI++ + Sbjct: 124 PVDVHVPGCPPRPEALMHGFLLLQEKIKKSRAL 156 >gi|218460106|ref|ZP_03500197.1| NADH-ubiquinone oxidoreductase protein, chain B [Rhizobium etli Kim 5] Length = 167 Score = 215 bits (549), Expect = 2e-54, Method: Composition-based stats. Identities = 83/153 (54%), Positives = 113/153 (73%), Gaps = 1/153 (0%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP 90 + L T+ D +++W+R +L TFG+ACCA+EM+ A RYDL+RFG R SP Sbjct: 5 NNAIRDSVLFTTADSIISWSRRSALWPETFGIACCAIEMISAGCARYDLDRFGVVFRPSP 64 Query: 91 RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150 RQSDVMI+AGT+T K A +RR+YDQMPEPR+VI+MG+CA GG Y+ +Y+VV+G + V Sbjct: 65 RQSDVMIIAGTVTRKFAPVVRRLYDQMPEPRWVIAMGTCAISGGVYN-TYAVVQGSETFV 123 Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 PVD++VPGCPP EAL++G LLLQ+KI+R + Sbjct: 124 PVDVHVPGCPPRPEALMHGFLLLQEKIKRSRAL 156 >gi|16263286|ref|NP_436079.1| NuoB2 NADH I chain B [Sinorhizobium meliloti 1021] gi|307304395|ref|ZP_07584146.1| NADH-quinone oxidoreductase, B subunit [Sinorhizobium meliloti BL225C] gi|307318102|ref|ZP_07597538.1| NADH-quinone oxidoreductase, B subunit [Sinorhizobium meliloti AK83] gi|17380450|sp|P56897|NUOB2_RHIME RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName: Full=NADH dehydrogenase I subunit B 2; AltName: Full=NDH-1 subunit B 2 gi|14523963|gb|AAK65491.1| NuoB2 NADH:quinone oxidoreductase (chain B) [Sinorhizobium meliloti 1021] gi|306896143|gb|EFN26893.1| NADH-quinone oxidoreductase, B subunit [Sinorhizobium meliloti AK83] gi|306902597|gb|EFN33191.1| NADH-quinone oxidoreductase, B subunit [Sinorhizobium meliloti BL225C] Length = 167 Score = 215 bits (549), Expect = 2e-54, Method: Composition-based stats. Identities = 82/153 (53%), Positives = 114/153 (74%), Gaps = 1/153 (0%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP 90 ++ L T+ D +++W+R +L TFG+ACCA+EM+ A RYDL+RFG R SP Sbjct: 5 NDAIRDSVLFTTADSIISWSRRSALWPETFGIACCAIEMISAGCARYDLDRFGVVFRPSP 64 Query: 91 RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150 RQSDVMI+AGT+T K A +RR+YDQMPEPR+VI+MG+CA GG Y+ +Y+VV+G + V Sbjct: 65 RQSDVMIIAGTVTRKFAPVVRRLYDQMPEPRWVIAMGTCAISGGVYN-TYAVVQGSETFV 123 Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 PVD++VPGCPP EAL++G LLLQ+KI++ + Sbjct: 124 PVDVHVPGCPPRPEALMHGFLLLQEKIKKSRAL 156 >gi|20090355|ref|NP_616430.1| F(420)H(2) dehydrogenase, subunit FpoB [Methanosarcina acetivorans C2A] gi|19915360|gb|AAM04910.1| F(420)H(2) dehydrogenase, subunit FpoB [Methanosarcina acetivorans C2A] Length = 184 Score = 215 bits (549), Expect = 2e-54, Method: Composition-based stats. Identities = 70/174 (40%), Positives = 107/174 (61%), Gaps = 3/174 (1%) Query: 6 VNQKIISGQSSCSLEKVDADFSRISSEITHKGFLV-TSVDQLVTWARTGSLMWMTFGLAC 64 V + + + E++ + ++ I+ FL T L+ W R SL +MT + C Sbjct: 4 VKETKTNNTTGTPEEEIPGVITTTTNAISD--FLKKTKAQDLINWGRKNSLWFMTQPMGC 61 Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C VEM+ YD +RFG PR SPR +DVMI++G +T K AL+R+++QMP P++VI Sbjct: 62 CGVEMIATGCAHYDTDRFGIIPRNSPRHADVMIISGYVTKKYLPALKRLWEQMPAPKWVI 121 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 +MG C+ GG ++ SYS V+ D + P+D+++PGCPP EALI G + LQ+KI+ Sbjct: 122 AMGDCSISGGPFYESYSTVQNIDELFPIDVFIPGCPPRPEALIQGFVELQEKIK 175 >gi|289548152|ref|YP_003473140.1| NADH-quinone oxidoreductase subunit beta [Thermocrinis albus DSM 14484] gi|289181769|gb|ADC89013.1| NADH-quinone oxidoreductase, B subunit [Thermocrinis albus DSM 14484] Length = 178 Score = 215 bits (549), Expect = 2e-54, Method: Composition-based stats. Identities = 78/152 (51%), Positives = 117/152 (76%), Gaps = 1/152 (0%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 + GF++T+V++L++W+R +L +T GLACCA+EMM A+ R+DL+R G RASPRQ Sbjct: 4 LNSNGFVLTTVEELLSWSRRNALWPVTIGLACCAIEMMHAAASRFDLDRLGVIFRASPRQ 63 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 +D++IVAGT+ NK+A L+ +++QMP+P++ I+MG CA+ GG + +YS ++G DRI+PV Sbjct: 64 ADLLIVAGTVVNKVAPMLKLIWEQMPDPKWCITMGGCASAGGPFP-TYSTLQGMDRIIPV 122 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 D+Y+PGCPP + L+YGIL LQKKI+ G K Sbjct: 123 DVYIPGCPPHPQGLLYGILQLQKKIKEQGVRK 154 >gi|87123074|ref|ZP_01078925.1| putative respiratory-chain NADH dehydrogenase subunit [Synechococcus sp. RS9917] gi|86168794|gb|EAQ70050.1| putative respiratory-chain NADH dehydrogenase subunit [Synechococcus sp. RS9917] Length = 246 Score = 215 bits (549), Expect = 2e-54, Method: Composition-based stats. Identities = 76/166 (45%), Positives = 109/166 (65%), Gaps = 6/166 (3%) Query: 13 GQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQA 72 G + + E A S +S ++TS+D L WAR SL + +G ACC +E Sbjct: 10 GPVAGAAEGAPAVTSDLSE-----NVILTSLDDLHNWARLSSLWPLLYGTACCFIEFAAL 64 Query: 73 SMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANG 132 R+D +RFG PR+SPRQ+D++IVAGT+T KMA AL R+Y+QMPEP+YVI+MG+C Sbjct: 65 IGSRFDFDRFGLVPRSSPRQADLLIVAGTVTMKMAPALVRLYEQMPEPKYVIAMGACTIT 124 Query: 133 GGYYH-YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 GG + S + VRG D+++PVD+Y+PGCPP EA+ ++ L+KK+ Sbjct: 125 GGMFSADSTTAVRGVDKLIPVDLYLPGCPPRPEAIFDAVIKLRKKV 170 >gi|309322179|ref|YP_003934094.1| NADH-plastoquinone oxidoreductase subunit K [Geranium palmatum] gi|197131358|gb|ACH47197.1| NADH-plastoquinone oxidoreductase subunit K [Geranium palmatum] gi|300069272|gb|ADJ66393.1| NADH-plastoquinone oxidoreductase subunit K [Geranium palmatum] Length = 225 Score = 215 bits (548), Expect = 2e-54, Method: Composition-based stats. Identities = 72/150 (48%), Positives = 102/150 (68%), Gaps = 1/150 (0%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93 T L T+ + L W+R SL + +G +CC +E R+D +R+G PR+SPRQ+ Sbjct: 13 TQNSVLSTTPNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 72 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGCDRIVPV 152 D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++PV Sbjct: 73 DLVLTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 132 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGN 182 D+Y+PGCPP EA+I I L+KKI R N Sbjct: 133 DVYLPGCPPKPEAVIDAITKLRKKISREIN 162 >gi|312886635|ref|ZP_07746242.1| NADH dehydrogenase subunit B [Mucilaginibacter paludis DSM 18603] gi|311300737|gb|EFQ77799.1| NADH dehydrogenase subunit B [Mucilaginibacter paludis DSM 18603] Length = 166 Score = 215 bits (548), Expect = 2e-54, Method: Composition-based stats. Identities = 87/143 (60%), Positives = 109/143 (76%), Gaps = 1/143 (0%) Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVM 96 G +VT +D L+ W+R SL ++FG+ACCA+EMM + YDL+RFG PR S RQ+DV+ Sbjct: 11 GIIVTKLDDLMNWSRLSSLWPLSFGIACCAIEMMGSMASTYDLDRFGVFPRPSARQADVI 70 Query: 97 IVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPVDIY 155 I+AGT+T KMA ++R+Y+QMPEP+YVISMGSC+N GG Y Y VV+G DRI+PVDIY Sbjct: 71 IIAGTVTFKMAERIKRLYEQMPEPKYVISMGSCSNCGGPYWQHGYHVVKGVDRIIPVDIY 130 Query: 156 VPGCPPTAEALIYGILLLQKKIR 178 V GCPP EALI GIL LQKKI Sbjct: 131 VQGCPPRPEALIGGILELQKKIE 153 >gi|91065096|gb|ABE03928.1| NuoB [Theonella swinhoei bacterial symbiont clone pSW1H8] Length = 178 Score = 215 bits (548), Expect = 2e-54, Method: Composition-based stats. Identities = 85/154 (55%), Positives = 115/154 (74%), Gaps = 2/154 (1%) Query: 26 FSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA 85 F R E+ G L +++ +LV W R+ SL TFGLACCA+EMMQ++ R DL RFG Sbjct: 7 FERDVQELETDGILFSTLGKLVAWGRSNSLWPATFGLACCAIEMMQSTNSRNDLARFGSE 66 Query: 86 -PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR 144 RASPRQ+DVMIVAG L+ KMA +RRVY+QMP+P++VISMG+CA+ GG ++ Y++V+ Sbjct: 67 VFRASPRQADVMIVAGRLSKKMAPVMRRVYEQMPDPKWVISMGACASSGGMFNN-YAIVQ 125 Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 D +VPVDI+VPGCPP EAL+Y ++ LQK++R Sbjct: 126 NVDSVVPVDIFVPGCPPRPEALVYAVMQLQKRVR 159 >gi|116622878|ref|YP_825034.1| NADH-quinone oxidoreductase subunit B [Candidatus Solibacter usitatus Ellin6076] gi|122253898|sp|Q020B6|NUOB1_SOLUE RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName: Full=NADH dehydrogenase I subunit B 1; AltName: Full=NDH-1 subunit B 1 gi|116226040|gb|ABJ84749.1| NADH-quinone oxidoreductase, B subunit [Candidatus Solibacter usitatus Ellin6076] Length = 188 Score = 215 bits (548), Expect = 2e-54, Method: Composition-based stats. Identities = 78/150 (52%), Positives = 111/150 (74%), Gaps = 2/150 (1%) Query: 35 HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQS 93 + F+ T+VD + WAR +L +TFGLACCA+EM+ +S R+D+ RFG R SPRQS Sbjct: 10 EQNFITTNVDHVFNWARKSALWPLTFGLACCAIEMIASSTSRFDIARFGAEVFRPSPRQS 69 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD 153 D+MIVAGT+T KMA L+R++DQMP+P++ ISMG+C++ GG ++ +Y+V++G D+IVPVD Sbjct: 70 DLMIVAGTVTLKMAPVLKRIWDQMPDPKWCISMGACSSVGGPFN-TYAVLQGVDKIVPVD 128 Query: 154 IYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 +YV GCPP E L Y +L LQ KI + + Sbjct: 129 VYVTGCPPRPENLFYALLKLQDKIDTMTTL 158 >gi|254421629|ref|ZP_05035347.1| NADH-quinone oxidoreductase, B subunit subfamily, putative [Synechococcus sp. PCC 7335] gi|196189118|gb|EDX84082.1| NADH-quinone oxidoreductase, B subunit subfamily, putative [Synechococcus sp. PCC 7335] Length = 242 Score = 215 bits (548), Expect = 2e-54, Method: Composition-based stats. Identities = 71/148 (47%), Positives = 103/148 (69%), Gaps = 1/148 (0%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP 90 ++ + ++T+VD L W R SL + +G ACC +E R+D +RFG APRASP Sbjct: 22 TQDLSENVILTTVDDLYNWTRLSSLFPLLYGTACCFIEFAALLGSRFDFDRFGLAPRASP 81 Query: 91 RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGCDRI 149 RQ+D++IVAGT+T KMA AL R+Y+QMP+P YV++MG+C GG + S + +RG D+I Sbjct: 82 RQADLIIVAGTVTMKMAPALVRLYEQMPKPAYVMAMGACTITGGMFSADSPTALRGVDKI 141 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKI 177 +PVD+Y+PGCPP EA+ ++ L+KKI Sbjct: 142 IPVDVYIPGCPPRPEAIFDAVIKLRKKI 169 >gi|251773166|gb|EES53719.1| NADH dehydrogenase (ubiquinone), B subunit [Leptospirillum ferrodiazotrophum] Length = 165 Score = 215 bits (548), Expect = 2e-54, Method: Composition-based stats. Identities = 89/146 (60%), Positives = 112/146 (76%), Gaps = 2/146 (1%) Query: 39 LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APRASPRQSDVMI 97 L +V+ +V W+R +L MTFGLACCA+EMM A R+D++RFG RASPRQSD+MI Sbjct: 18 LQDAVNDIVNWSRKSALWPMTFGLACCAIEMMGAVASRFDIDRFGAGVFRASPRQSDLMI 77 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGTLT KMA +R++YDQMPEPRYVI+MGSCA G Y SYSVV+G DR++PVD+YVP Sbjct: 78 VAGTLTRKMAPVVRKIYDQMPEPRYVIAMGSCATSGNIY-DSYSVVQGVDRLIPVDVYVP 136 Query: 158 GCPPTAEALIYGILLLQKKIRRVGNV 183 GCPP EAL+ G++ LQ+KI + V Sbjct: 137 GCPPRPEALLDGLIKLQEKIMQDKPV 162 >gi|313183997|ref|YP_004021154.1| NADH-plastoquinone oxidoreductase subunit K [Castanea mollissima] gi|309321524|gb|ADO65064.1| NADH-plastoquinone oxidoreductase subunit K [Castanea mollissima] Length = 255 Score = 215 bits (548), Expect = 2e-54, Method: Composition-based stats. Identities = 67/148 (45%), Positives = 100/148 (67%), Gaps = 1/148 (0%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93 + T+ + L W+R SL + +G +CC +E R+D +R+G PR+SPRQ+ Sbjct: 40 QKNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 99 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGCDRIVPV 152 D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SY+ VRG D+++PV Sbjct: 100 DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYTTVRGVDKLIPV 159 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRV 180 D+Y+PGCPP EA+I I L+KK+ R Sbjct: 160 DVYLPGCPPKPEAVIDAITKLRKKLSRE 187 >gi|309322236|ref|YP_003934314.1| NADH-plastoquinone oxidoreductase subunit K [Monsonia speciosa] gi|197131360|gb|ACH47198.1| NADH-plastoquinone oxidoreductase subunit K [Monsonia speciosa] gi|300069329|gb|ADJ66449.1| NADH-plastoquinone oxidoreductase subunit K [Monsonia speciosa] Length = 225 Score = 215 bits (548), Expect = 2e-54, Method: Composition-based stats. Identities = 71/148 (47%), Positives = 100/148 (67%), Gaps = 1/148 (0%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93 T L T+ L W+R SL + +G +CC +E R+D +R+G PR+SPRQ+ Sbjct: 13 TQNSVLSTTSTDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 72 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGCDRIVPV 152 D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++PV Sbjct: 73 DLVLTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 132 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRV 180 D+Y+PGCPP EA+I I L+KKI R Sbjct: 133 DVYLPGCPPKPEAVIDAITKLRKKIARE 160 >gi|290489744|gb|ADD31256.1| NADH-plastoquinone oxidoreductase subunit K protein [Quercus nigra] Length = 230 Score = 215 bits (548), Expect = 2e-54, Method: Composition-based stats. Identities = 67/148 (45%), Positives = 100/148 (67%), Gaps = 1/148 (0%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93 + T+ + L W+R SL + +G +CC +E R+D +R+G PR+SPRQ+ Sbjct: 15 QKNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 74 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGCDRIVPV 152 D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SY+ VRG D+++PV Sbjct: 75 DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYTTVRGVDKLIPV 134 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRV 180 D+Y+PGCPP EA+I I L+KK+ R Sbjct: 135 DVYLPGCPPKPEAVIDAITKLRKKLSRE 162 >gi|197131362|gb|ACH47199.1| NADH-plastoquinone oxidoreductase subunit K [Sarcocaulon vanderietiae] Length = 213 Score = 215 bits (547), Expect = 3e-54, Method: Composition-based stats. Identities = 72/150 (48%), Positives = 102/150 (68%), Gaps = 1/150 (0%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93 T L T+ + L W+R SL + +G +CC +E R+D +R+G PR+SPRQ+ Sbjct: 13 TQNSVLSTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 72 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGCDRIVPV 152 D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++PV Sbjct: 73 DLVLTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 132 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGN 182 D+Y+PGCPP EA+I I L+KKI R N Sbjct: 133 DVYLPGCPPKPEAVIDAITKLRKKIAREIN 162 >gi|22298247|ref|NP_681494.1| NADH dehydrogenase subunit B [Thermosynechococcus elongatus BP-1] gi|81743557|sp|Q8DKZ4|NDHK_THEEB RecName: Full=NAD(P)H-quinone oxidoreductase subunit K; AltName: Full=NAD(P)H dehydrogenase I subunit K; AltName: Full=NDH-1 subunit K; Short=NDH-K gi|22294426|dbj|BAC08256.1| NADH dehydrogenase subunit [Thermosynechococcus elongatus BP-1] Length = 237 Score = 215 bits (547), Expect = 3e-54, Method: Composition-based stats. Identities = 71/152 (46%), Positives = 103/152 (67%), Gaps = 2/152 (1%) Query: 27 SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP 86 + E+ ++TS++ + WAR SL + +G ACC +E R+D +RFG P Sbjct: 16 PEVPQELAE-NIILTSLNDVYDWARLSSLWPLMYGTACCFIEFAAMIGSRFDFDRFGLVP 74 Query: 87 RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRG 145 R SPRQ+D++I +GT+T KMA AL R+Y+QMP P+YVI+MG+C GG + SYS VRG Sbjct: 75 RNSPRQADLIITSGTITMKMAPALVRLYEQMPSPKYVIAMGACTITGGMFSSDSYSAVRG 134 Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 D+++PVD+Y+PGCPP EA++ I+ L+KKI Sbjct: 135 VDKLIPVDVYLPGCPPRPEAIMDAIVKLRKKI 166 >gi|114054388|gb|ABI49782.1| NADH-plastoquinone oxidoreductase subunit K [Platanus occidentalis] Length = 285 Score = 215 bits (547), Expect = 3e-54, Method: Composition-based stats. Identities = 69/154 (44%), Positives = 102/154 (66%), Gaps = 1/154 (0%) Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87 + T + T+ + L W+R SL + +G +CC +E R+D +R+G PR Sbjct: 67 PLLDRTTQNSVISTTPNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 126 Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146 +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG Sbjct: 127 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 186 Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 D+++PVD+Y+PGCPP EA+I I L+KK+ R Sbjct: 187 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKVSRE 220 >gi|193215671|ref|YP_001996870.1| NADH-quinone oxidoreductase subunit B [Chloroherpeton thalassium ATCC 35110] gi|238065009|sp|B3QUS2|NUOB1_CHLT3 RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName: Full=NADH dehydrogenase I subunit B 1; AltName: Full=NDH-1 subunit B 1 gi|193089148|gb|ACF14423.1| NADH-quinone oxidoreductase, B subunit [Chloroherpeton thalassium ATCC 35110] Length = 186 Score = 215 bits (547), Expect = 3e-54, Method: Composition-based stats. Identities = 75/153 (49%), Positives = 111/153 (72%), Gaps = 2/153 (1%) Query: 30 SSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRA 88 + GFL T++D + W R S+ M GL+CCA+EMM + PRYD+ RFG R Sbjct: 3 GQQGMGDGFLTTTLDAITNWGRANSIWPMPMGLSCCAIEMMAMAGPRYDIARFGAEVFRF 62 Query: 89 SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 148 SPRQSD+MIVAGT+T KMA+ +++++DQMPEP++ I+MG+C++ GG + SY VV+G D+ Sbjct: 63 SPRQSDLMIVAGTVTYKMATVVKKIWDQMPEPKWCIAMGACSSSGGMFR-SYPVVQGIDQ 121 Query: 149 IVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181 +PVD+YVPGCPP +A+I+ ++ +Q+KI+R Sbjct: 122 FLPVDVYVPGCPPRPDAVIHAVMEIQEKIKRQK 154 >gi|296268274|ref|YP_003650906.1| NADH-quinone oxidoreductase subunit B [Thermobispora bispora DSM 43833] gi|296091061|gb|ADG87013.1| NADH-quinone oxidoreductase, B subunit [Thermobispora bispora DSM 43833] Length = 183 Score = 215 bits (547), Expect = 3e-54, Method: Composition-based stats. Identities = 79/152 (51%), Positives = 108/152 (71%), Gaps = 2/152 (1%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR-AS 89 E GFL+T+V++ V WAR S+ TFGLACCA+E+M P++DL RFG A+ Sbjct: 4 EEKLPSGFLLTTVEKAVGWARKNSVWPATFGLACCAIELMATGGPKHDLARFGMERASAT 63 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQ+D+MIVAG ++ KMA +RR+YDQM EP++VI+MG CA+ GG ++ Y+VV+G D I Sbjct: 64 PRQADLMIVAGRVSQKMAPVVRRIYDQMAEPKWVIAMGVCASSGGMFNN-YAVVQGVDHI 122 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181 VPVD+Y+PGCPP E LI I+ L KI+ + Sbjct: 123 VPVDVYLPGCPPRPEMLIDAIVKLHDKIQNMK 154 >gi|313901777|ref|ZP_07835202.1| NADH-quinone oxidoreductase, B subunit [Thermaerobacter subterraneus DSM 13965] gi|313467955|gb|EFR63444.1| NADH-quinone oxidoreductase, B subunit [Thermaerobacter subterraneus DSM 13965] Length = 236 Score = 215 bits (547), Expect = 3e-54, Method: Composition-based stats. Identities = 80/144 (55%), Positives = 106/144 (73%) Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVM 96 G + + +LV W R SL ++ FGLACCA+EMM A R DL+R G RASPRQ+D+M Sbjct: 87 GIVTARLQELVNWGRANSLWYLLFGLACCAIEMMAAGATRTDLDRIGSVFRASPRQADLM 146 Query: 97 IVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV 156 IV+GT+T KMA ++ +YDQM EP++VISMG+CA GG Y+ Y+VV G D+I+PVD+YV Sbjct: 147 IVSGTVTEKMAPVVKTLYDQMAEPKFVISMGACATNGGPYYQGYNVVDGVDKIIPVDVYV 206 Query: 157 PGCPPTAEALIYGILLLQKKIRRV 180 GCPP EAL++ IL LQ K+R+V Sbjct: 207 AGCPPRPEALVHAILKLQDKVRKV 230 >gi|298674246|ref|YP_003725996.1| NADH-quinone oxidoreductase subunit B [Methanohalobium evestigatum Z-7303] gi|298287234|gb|ADI73200.1| NADH-quinone oxidoreductase, B subunit [Methanohalobium evestigatum Z-7303] Length = 189 Score = 215 bits (547), Expect = 3e-54, Method: Composition-based stats. Identities = 78/175 (44%), Positives = 102/175 (58%), Gaps = 4/175 (2%) Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62 T N + V S SE K T V ++ W R SL +MT + Sbjct: 6 NTNTNNDAGKPSGELEIPGVITTNSNAISEFLKK----TKVQDIINWGRKNSLWFMTQPM 61 Query: 63 ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122 CC VEM+ YD +RFG PR SPRQ+DVMI++G +T K AL++VY+QMP P++ Sbjct: 62 GCCGVEMIATGCAHYDTDRFGIIPRNSPRQADVMIISGYVTKKYFPALKKVYEQMPSPKW 121 Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 VI+MG CA GG ++ SYS V+ D I P+D+Y+PGCPP EALI G + LQKKI Sbjct: 122 VIAMGDCAISGGPFYESYSTVQNIDEIFPIDVYIPGCPPRPEALIQGFVELQKKI 176 >gi|46446194|ref|YP_007559.1| NADH-ubiquinone oxidoreductase chain B [Candidatus Protochlamydia amoebophila UWE25] gi|81627441|sp|Q6MDR5|NUOB_PARUW RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|46399835|emb|CAF23284.1| probable NADH-ubiquinone oxidoreductase chain B [Candidatus Protochlamydia amoebophila UWE25] Length = 164 Score = 215 bits (547), Expect = 3e-54, Method: Composition-based stats. Identities = 78/151 (51%), Positives = 110/151 (72%), Gaps = 2/151 (1%) Query: 29 ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PR 87 ++ + FL+ +++LV WAR+ SL FGLACCA+EMM + RYDL RFG R Sbjct: 3 MNHQQEKTPFLIAPLEKLVNWARSNSLWPAQFGLACCAIEMMSTAASRYDLARFGMEVFR 62 Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCD 147 ASPRQSDVMIVAG ++ KMA L+ +Y+QM EP++VI+MG CA+ GG Y+ Y++++G D Sbjct: 63 ASPRQSDVMIVAGRVSQKMAPVLQTIYEQMLEPKWVIAMGDCASCGGVYNN-YAIIQGVD 121 Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 ++VPVD+Y+ GCPP EALI +++LQ KI+ Sbjct: 122 KLVPVDVYLAGCPPRPEALIDALIMLQNKIK 152 >gi|284054939|ref|ZP_06385149.1| NADH dehydrogenase subunit B [Arthrospira platensis str. Paraca] gi|291566379|dbj|BAI88651.1| NADH dehydrogenase subunit K [Arthrospira platensis NIES-39] Length = 241 Score = 215 bits (547), Expect = 3e-54, Method: Composition-based stats. Identities = 72/168 (42%), Positives = 108/168 (64%), Gaps = 2/168 (1%) Query: 11 ISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMM 70 S + + +++ E++ ++T+VD L WAR SL + +G ACC +E Sbjct: 3 TQSPSPNTTIINPMERPQVTQELSE-NVILTTVDDLYNWARLSSLWPLLYGTACCFIEFA 61 Query: 71 QASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCA 130 R+D +RFG PR+SPRQ+D++I AGT+T K + L R+Y+QMPEP+YVI+MG+C Sbjct: 62 GLIGSRFDFDRFGLVPRSSPRQADLLITAGTITMKYSPMLVRLYEQMPEPKYVIAMGACT 121 Query: 131 NGGGYYH-YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 GG + S + VRG D+++PVD+Y+PGCPP EA+I I+ L+KKI Sbjct: 122 VTGGMFSMDSTTAVRGVDKLIPVDVYIPGCPPRPEAIIDAIIKLRKKI 169 >gi|326800573|ref|YP_004318392.1| NAD(P)H-quinone oxidoreductase subunit K [Sphingobacterium sp. 21] gi|326551337|gb|ADZ79722.1| NAD(P)H-quinone oxidoreductase subunit K [Sphingobacterium sp. 21] Length = 163 Score = 214 bits (546), Expect = 3e-54, Method: Composition-based stats. Identities = 87/149 (58%), Positives = 110/149 (73%), Gaps = 1/149 (0%) Query: 30 SSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS 89 +S T G +V +D L+ WAR S+ ++FG+ACCA+EMM A YDL+R+G PRAS Sbjct: 3 TSTQTDSGIVVAKLDDLLNWARLSSMWPVSFGIACCAIEMMGAMAATYDLDRYGVFPRAS 62 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDR 148 PRQ+DV+I+AGT+T KMA +R +Y+QMPEP+YVISMGSC+N GG Y Y VV+G D+ Sbjct: 63 PRQADVIIIAGTVTFKMADRIRLLYEQMPEPKYVISMGSCSNCGGPYWQHGYHVVKGVDK 122 Query: 149 IVPVDIYVPGCPPTAEALIYGILLLQKKI 177 I+PVDIYV GCPP EALI L LQKKI Sbjct: 123 IIPVDIYVQGCPPRPEALIGAFLELQKKI 151 >gi|159899599|ref|YP_001545846.1| NADH dehydrogenase subunit B [Herpetosiphon aurantiacus ATCC 23779] gi|238065011|sp|A9B4Z5|NUOB1_HERA2 RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName: Full=NADH dehydrogenase I subunit B 1; AltName: Full=NDH-1 subunit B 1 gi|159892638|gb|ABX05718.1| NADH-quinone oxidoreductase, B subunit [Herpetosiphon aurantiacus ATCC 23779] Length = 179 Score = 214 bits (546), Expect = 3e-54, Method: Composition-based stats. Identities = 81/154 (52%), Positives = 109/154 (70%), Gaps = 2/154 (1%) Query: 29 ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-R 87 + + G + T+++ +V W RT ++ M FGLACCA+EMM YD+ RFG R Sbjct: 3 LEEKAGDLGIVTTTLEGVVNWGRTKAMWPMLFGLACCAIEMMAGQASNYDMSRFGLELMR 62 Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCD 147 ASPRQ+D+MIVAG ++ KMA LRR+YDQMPEP++V++MG CA+ GG Y+ Y++V+G D Sbjct: 63 ASPRQADLMIVAGRVSRKMAPVLRRLYDQMPEPKWVVAMGDCASCGGVYNN-YAIVQGVD 121 Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181 IVPVD+YV GCPP EALI GIL L +KI+R Sbjct: 122 EIVPVDVYVAGCPPRPEALIDGILQLHEKIKRDK 155 >gi|134103329|ref|YP_001108990.1| NADH dehydrogenase subunit B [Saccharopolyspora erythraea NRRL 2338] gi|291004452|ref|ZP_06562425.1| NADH dehydrogenase subunit B [Saccharopolyspora erythraea NRRL 2338] gi|238065203|sp|A4FPU0|NUOB_SACEN RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|133915952|emb|CAM06065.1| NADH dehydrogenase I chain B [Saccharopolyspora erythraea NRRL 2338] Length = 220 Score = 214 bits (546), Expect = 3e-54, Method: Composition-based stats. Identities = 80/148 (54%), Positives = 104/148 (70%), Gaps = 2/148 (1%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89 E G L+ +V++LV W R S+ FGLACCA+EMM RYD+ RFG A+ Sbjct: 4 EEKLPNGILLANVEKLVNWTRKTSVWPAAFGLACCAIEMMTVGGSRYDIARFGMERFSAT 63 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQ+D+M+VAG +TNKMA LR+VYDQMPEPR+VI+MG CA+ GG ++ Y+VV+G D + Sbjct: 64 PRQADLMVVAGRVTNKMAPVLRQVYDQMPEPRWVIAMGVCASSGGMFNN-YAVVQGVDHV 122 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKI 177 VPVD+Y+PGCPP E L+ IL L KI Sbjct: 123 VPVDMYLPGCPPRPEMLLDAILKLHAKI 150 >gi|94267895|ref|ZP_01291027.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit [delta proteobacterium MLMS-1] gi|93451814|gb|EAT02564.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit [delta proteobacterium MLMS-1] Length = 177 Score = 214 bits (546), Expect = 4e-54, Method: Composition-based stats. Identities = 75/162 (46%), Positives = 107/162 (66%), Gaps = 3/162 (1%) Query: 19 LEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78 + + D ++ + +D+L+ R SL +TFGLACCA+EMM R+D Sbjct: 1 MTNLSKDLKQLRQDEHPPVVQFAVLDKLLNLGRANSLWPLTFGLACCAIEMMATGASRFD 60 Query: 79 LERFGF-APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137 L+RFG R +P+QSDVMIVAGT++ KMA A+ +Y+QMP P++VI+MG+CA GG + Sbjct: 61 LDRFGMGVFRPAPKQSDVMIVAGTVSKKMAPAVVTLYEQMPHPKWVIAMGNCAISGGPFA 120 Query: 138 --YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 Y +V G D+IVPVD+Y+PGCPP EALI G+L L++K+ Sbjct: 121 FEGQYGIVEGADKIVPVDVYIPGCPPRPEALIEGLLQLEEKL 162 >gi|91203915|emb|CAJ71568.1| strongly similar to proton-translocating NADH dehydrogenase I chain B [Candidatus Kuenenia stuttgartiensis] Length = 155 Score = 214 bits (546), Expect = 4e-54, Method: Composition-based stats. Identities = 81/150 (54%), Positives = 111/150 (74%), Gaps = 2/150 (1%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89 L T++ +V WAR SL M FGLACCA+EMM PR+DL RFG R S Sbjct: 4 ESHLGDNILTTTLTTMVNWARKSSLWPMPFGLACCAIEMMAVVAPRHDLARFGAEVFRFS 63 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQSD+MIVAGTLT KMAS +++Y+QMPEP++V++MG+CA GG ++ +YSVV+G +++ Sbjct: 64 PRQSDLMIVAGTLTYKMASVAKKIYEQMPEPKWVVAMGACAVSGGVFN-TYSVVQGLEQV 122 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRR 179 +PVD+Y+PGCPP EALI+ I+ +QKKI++ Sbjct: 123 IPVDVYLPGCPPRPEALIHAIMEIQKKIQK 152 >gi|302035622|ref|YP_003795944.1| NADH-quinone oxidoreductase subunit B [Candidatus Nitrospira defluvii] gi|300603686|emb|CBK40017.1| NADH-quinone oxidoreductase, subunit B [Candidatus Nitrospira defluvii] Length = 175 Score = 214 bits (546), Expect = 4e-54, Method: Composition-based stats. Identities = 89/145 (61%), Positives = 110/145 (75%), Gaps = 2/145 (1%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APRASPRQSDVM 96 + +V++ V WAR GSL MTFGLACCA+EM+ A RYD++R+G RASPRQSD+M Sbjct: 17 VITLTVEKAVNWARKGSLWPMTFGLACCAIEMIAAVSSRYDMDRYGAGVFRASPRQSDLM 76 Query: 97 IVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV 156 IVAGT+ +MA +R++YDQMPEP+YVI+MGSCA G Y SYSVV+G DR VPVDIYV Sbjct: 77 IVAGTVCRRMAPVIRKIYDQMPEPKYVIAMGSCATSGNIY-DSYSVVQGVDRFVPVDIYV 135 Query: 157 PGCPPTAEALIYGILLLQKKIRRVG 181 PGCPPT EAL GIL LQ++I + Sbjct: 136 PGCPPTPEALFDGILKLQERIMQKR 160 >gi|296122635|ref|YP_003630413.1| NADH-quinone oxidoreductase, subunit beta [Planctomyces limnophilus DSM 3776] gi|296014975|gb|ADG68214.1| NADH-quinone oxidoreductase, B subunit [Planctomyces limnophilus DSM 3776] Length = 225 Score = 214 bits (546), Expect = 4e-54, Method: Composition-based stats. Identities = 81/146 (55%), Positives = 113/146 (77%), Gaps = 2/146 (1%) Query: 35 HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APRASPRQS 93 + +VT+++Q + W + S+ +TFG+ACCA+EMM M +YDL+RFG A RA+PRQ+ Sbjct: 33 EENLIVTTLEQAMNWGQLSSVWPLTFGIACCAMEMMATGMSKYDLDRFGSGAFRATPRQA 92 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY-YHYSYSVVRGCDRIVPV 152 D+MIVAGT+T KMAS +RR+YDQMP+P+YVI+MG+C GGG + Y Y VV+G D +VPV Sbjct: 93 DLMIVAGTVTYKMASRIRRLYDQMPDPKYVIAMGACTIGGGPYFKYGYHVVKGVDLVVPV 152 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIR 178 D+Y+PGCPP EAL+ G++ +Q KIR Sbjct: 153 DVYIPGCPPRPEALLEGVMRIQDKIR 178 >gi|219847965|ref|YP_002462398.1| NADH dehydrogenase subunit B [Chloroflexus aggregans DSM 9485] gi|238065007|sp|B8G705|NUOB1_CHLAD RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName: Full=NADH dehydrogenase I subunit B 1; AltName: Full=NDH-1 subunit B 1 gi|219542224|gb|ACL23962.1| NADH-quinone oxidoreductase, B subunit [Chloroflexus aggregans DSM 9485] Length = 174 Score = 214 bits (545), Expect = 4e-54, Method: Composition-based stats. Identities = 79/154 (51%), Positives = 110/154 (71%), Gaps = 2/154 (1%) Query: 29 ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APR 87 I + + G + T+++ +V W RT ++ + FGLACCA+EMM A YDL RFG R Sbjct: 3 IEEKAGNLGIVTTTLETVVNWGRTNAMWPLLFGLACCAIEMMGAQASNYDLSRFGMELNR 62 Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCD 147 ASPRQ+D+MIVAG ++ KMA +RR+YDQMPEP++VI+MG CA GG ++ Y++V+G D Sbjct: 63 ASPRQADLMIVAGRVSRKMAPVVRRLYDQMPEPKWVIAMGDCAACGGIFNN-YAIVQGVD 121 Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181 +VPVD+YV GCPP EALI GI++L +K+ R Sbjct: 122 EVVPVDVYVAGCPPRPEALIDGIMMLHQKVMREK 155 >gi|124515815|gb|EAY57324.1| NADH dehydrogenase (ubiquinone), B subunit [Leptospirillum rubarum] Length = 178 Score = 214 bits (545), Expect = 4e-54, Method: Composition-based stats. Identities = 91/146 (62%), Positives = 113/146 (77%), Gaps = 2/146 (1%) Query: 39 LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APRASPRQSDVMI 97 L +V++L+ W+R +L MTFGLACCA+EMM A R+D++RFG RASPRQSD+MI Sbjct: 18 LQDAVNELLNWSRKSALWPMTFGLACCAIEMMGAVASRFDIDRFGAGVFRASPRQSDLMI 77 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGTLT KMA +RR+YDQMPEPRYVI+MGSCA G Y SYSVV+G DRI+PVD+YVP Sbjct: 78 VAGTLTRKMAPVVRRIYDQMPEPRYVIAMGSCATSGNIY-DSYSVVQGVDRIIPVDVYVP 136 Query: 158 GCPPTAEALIYGILLLQKKIRRVGNV 183 GCPP EAL+ G++ LQ+KI + V Sbjct: 137 GCPPRPEALLDGLMKLQEKIMKDRPV 162 >gi|11304|emb|CAA45612.1| ndhK [Glycine max] Length = 224 Score = 214 bits (545), Expect = 4e-54, Method: Composition-based stats. Identities = 67/154 (43%), Positives = 101/154 (65%), Gaps = 1/154 (0%) Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87 + + T + T++ L W+R SL + +G +CC +E R+D +R+G PR Sbjct: 4 PLLDQTTKNSVISTTLIDLSNWSRLPSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 63 Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146 +SPRQ+D+++ GT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG Sbjct: 64 SSPRQADLILTVGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 123 Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 D+++PVD+Y+PGCP EA+I I L+K+I R Sbjct: 124 DKLIPVDVYLPGCPTKPEAIIDAITKLRKEISRE 157 >gi|253698814|ref|YP_003020003.1| trifunctional NADH dehydrogenase I subunit B/C/D [Geobacter sp. M21] gi|251773664|gb|ACT16245.1| NADH dehydrogenase I, D subunit [Geobacter sp. M21] Length = 794 Score = 214 bits (545), Expect = 4e-54, Method: Composition-based stats. Identities = 79/154 (51%), Positives = 109/154 (70%), Gaps = 2/154 (1%) Query: 26 FSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA 85 S+ + + L S+D ++ W R SL M FGL+CC VEMM + RYD+ RFG Sbjct: 1 MSQGDDDKIPENVLFASLDDMINWGRANSLWPMFFGLSCCFVEMMTSFTSRYDVSRFGAE 60 Query: 86 P-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR 144 R +PR+SD+M++AGT+ KMA ++ R+YDQM EP++VISMGSCAN GG Y YSVV+ Sbjct: 61 VLRGTPRESDLMVIAGTVFKKMAPSILRLYDQMAEPKWVISMGSCANSGGMY-DVYSVVQ 119 Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 G D+I+PVD+Y+PGCPP E+ + G++LLQ+KIR Sbjct: 120 GVDQILPVDLYIPGCPPRPESFLEGLMLLQQKIR 153 >gi|171910632|ref|ZP_02926102.1| NADH-quinone oxidoreductase, B subunit [Verrucomicrobium spinosum DSM 4136] Length = 177 Score = 214 bits (545), Expect = 5e-54, Method: Composition-based stats. Identities = 76/151 (50%), Positives = 107/151 (70%), Gaps = 2/151 (1%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQ 92 ++T +D + W R SL M GLACCA+E+M + RYD+ RFG R SPRQ Sbjct: 16 IESNVVITRLDAAINWMRKNSLWPMPMGLACCAIELMATASSRYDISRFGAEVFRFSPRQ 75 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 SDVM+VAGT+T KMA A++R++DQMPEP++ I+MG+CA+ GG Y SY+V++G DR++PV Sbjct: 76 SDVMVVAGTVTYKMALAVKRIWDQMPEPKWCIAMGACASSGGMYR-SYAVLQGIDRLIPV 134 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 D+Y+ GCPP EAL+ G LQ+KI + ++ Sbjct: 135 DVYISGCPPRPEALLEGFFRLQQKIEKEHSL 165 >gi|163848441|ref|YP_001636485.1| NADH dehydrogenase subunit B [Chloroflexus aurantiacus J-10-fl] gi|222526369|ref|YP_002570840.1| NADH dehydrogenase subunit B [Chloroflexus sp. Y-400-fl] gi|238065028|sp|A9WFB2|NUOB2_CHLAA RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName: Full=NADH dehydrogenase I subunit B 2; AltName: Full=NDH-1 subunit B 2 gi|238065030|sp|B9LAU1|NUOB2_CHLSY RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName: Full=NADH dehydrogenase I subunit B 2; AltName: Full=NDH-1 subunit B 2 gi|163669730|gb|ABY36096.1| NADH-quinone oxidoreductase, B subunit [Chloroflexus aurantiacus J-10-fl] gi|222450248|gb|ACM54514.1| NADH-quinone oxidoreductase, B subunit [Chloroflexus sp. Y-400-fl] Length = 174 Score = 214 bits (545), Expect = 5e-54, Method: Composition-based stats. Identities = 79/154 (51%), Positives = 110/154 (71%), Gaps = 2/154 (1%) Query: 29 ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APR 87 I + + G + T+++ +V W RT ++ + FGLACCA+EMM A YDL RFG R Sbjct: 3 IEEKAGNLGIVTTTLETVVNWGRTNAMWPLLFGLACCAIEMMGAQASNYDLSRFGMELNR 62 Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCD 147 ASPRQ+D+MIVAG ++ KMA +RR+YDQMPEP++VI+MG CA GG ++ Y++V+G D Sbjct: 63 ASPRQADLMIVAGRVSRKMAPVVRRLYDQMPEPKWVIAMGDCAACGGIFNN-YAIVQGVD 121 Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181 +VPVD+YV GCPP EALI GI++L +K+ R Sbjct: 122 EVVPVDVYVAGCPPRPEALIDGIMMLHQKVMREK 155 >gi|311897891|dbj|BAJ30299.1| putative NADH-quinone oxidoreductase subunit B [Kitasatospora setae KM-6054] Length = 184 Score = 214 bits (545), Expect = 5e-54, Method: Composition-based stats. Identities = 83/152 (54%), Positives = 104/152 (68%), Gaps = 2/152 (1%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89 E GFL+TSV+ W R SL TFGLACCA+EMM RYDL RFG R S Sbjct: 4 EEKLPSGFLLTSVEAAAGWVRKASLFPATFGLACCAIEMMTTGAGRYDLARFGMEVFRGS 63 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQ+D+MIVAG ++ KMA LR+VYDQMP P++VISMG CA+ GG ++ Y++V+G D I Sbjct: 64 PRQADLMIVAGRVSQKMAPVLRQVYDQMPNPKWVISMGVCASSGGMFNN-YAIVQGVDHI 122 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181 VPVDIY+PGCPP E L+ I+ L +KI+ Sbjct: 123 VPVDIYLPGCPPRPEMLLDAIIKLHEKIQHEK 154 >gi|227822752|ref|YP_002826724.1| NADH dehydrogenase subunit B [Sinorhizobium fredii NGR234] gi|227341753|gb|ACP25971.1| NADH dehydrogenase I chain B1 [Sinorhizobium fredii NGR234] Length = 167 Score = 214 bits (544), Expect = 6e-54, Method: Composition-based stats. Identities = 82/150 (54%), Positives = 111/150 (74%), Gaps = 1/150 (0%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93 L T+ D +++W+R +L TFG+ACCA+EM+ A RYDL+RFG R SPRQS Sbjct: 8 IRDSVLFTTADSVISWSRRSALWPETFGIACCAIEMISAGCARYDLDRFGVVFRPSPRQS 67 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD 153 DVMI+AGT+T K A +RR+YDQMPEPR+VI+MG+CA GG Y+ +Y+VV+G VPVD Sbjct: 68 DVMIIAGTVTRKFAPVVRRLYDQMPEPRWVIAMGTCAISGGVYN-TYAVVQGAQTFVPVD 126 Query: 154 IYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 ++VPGCPP EAL++G LLLQ+KI++ + Sbjct: 127 VHVPGCPPRPEALMHGFLLLQEKIKKDRAL 156 >gi|305666195|ref|YP_003862482.1| NADH-quinone oxidoreductase chain B [Maribacter sp. HTCC2170] gi|88707694|gb|EAQ99935.1| NADH-quinone oxidoreductase chain B [Maribacter sp. HTCC2170] Length = 185 Score = 214 bits (544), Expect = 6e-54, Method: Composition-based stats. Identities = 84/162 (51%), Positives = 116/162 (71%), Gaps = 3/162 (1%) Query: 20 EKVDADFS-RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78 ++ DF ++ +VTS+D+++ W R+ SL + FG +CCA+EMMQ R+D Sbjct: 6 PEIPEDFPGKVIPAGNGANVIVTSLDKIINWGRSNSLWSLYFGTSCCAIEMMQTGAARHD 65 Query: 79 LERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY- 136 RFGF R SPRQ+D++I+AGT+ NKMA LRR+YDQM EPRYVI+MG+CA GG + Sbjct: 66 YSRFGFEVARPSPRQADLIIIAGTIVNKMAPVLRRLYDQMAEPRYVIAMGACAISGGPFF 125 Query: 137 HYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 + +YSVV+G D ++PVD+YVPGCPP EAL+ G+L+LQ KIR Sbjct: 126 YNTYSVVKGADHVIPVDVYVPGCPPRPEALLEGMLMLQDKIR 167 >gi|290998039|ref|XP_002681588.1| predicted protein [Naegleria gruberi] gi|284095213|gb|EFC48844.1| predicted protein [Naegleria gruberi] Length = 174 Score = 214 bits (544), Expect = 6e-54, Method: Composition-based stats. Identities = 99/147 (67%), Positives = 114/147 (77%), Gaps = 3/147 (2%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 + FL + L WART SL ++FGLACCAVEMM S RYD+ER G R +PRQ Sbjct: 1 MAKAEFLKAPIHDLYAWARTSSLWPVSFGLACCAVEMMHTSASRYDIERMGIFYRPTPRQ 60 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 SD MI+AGTLTNKMA ALR+V+DQM EP+Y ISMGSCANGGGYYHYSY VVRG D+IVPV Sbjct: 61 SDAMIIAGTLTNKMAPALRKVWDQMSEPKYSISMGSCANGGGYYHYSYHVVRGADQIVPV 120 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179 D+YVPGCPPT L+YGI +LQKKI+R Sbjct: 121 DVYVPGCPPT---LLYGIYMLQKKIKR 144 >gi|159039974|ref|YP_001539227.1| NADH-quinone oxidoreductase, B subunit [Salinispora arenicola CNS-205] gi|238065040|sp|A8M621|NUOB2_SALAI RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName: Full=NADH dehydrogenase I subunit B 2; AltName: Full=NDH-1 subunit B 2 gi|157918809|gb|ABW00237.1| NADH-quinone oxidoreductase, B subunit [Salinispora arenicola CNS-205] Length = 226 Score = 214 bits (544), Expect = 6e-54, Method: Composition-based stats. Identities = 81/151 (53%), Positives = 109/151 (72%), Gaps = 2/151 (1%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89 E G L+TSV++LV W+R S+ TFGLACCA+EMM A P YD+ R+G RAS Sbjct: 4 EEKLPAGVLLTSVEKLVNWSRKSSVWGATFGLACCAIEMMAAGGPHYDMGRWGMEVFRAS 63 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQ+D+MIVAG ++ KMA LR++YDQM EPR+V+SMG CA+ GG ++ Y++V+G D + Sbjct: 64 PRQADLMIVAGRVSQKMAPVLRQIYDQMAEPRWVLSMGVCASSGGMFNN-YAIVQGVDHV 122 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 VPVD+Y+PGCPP E LI +L L++KI Sbjct: 123 VPVDMYLPGCPPRPEMLIDAVLKLREKIMHE 153 >gi|87311558|ref|ZP_01093676.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit [Blastopirellula marina DSM 3645] gi|87285680|gb|EAQ77596.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit [Blastopirellula marina DSM 3645] Length = 198 Score = 214 bits (544), Expect = 6e-54, Method: Composition-based stats. Identities = 82/146 (56%), Positives = 112/146 (76%), Gaps = 2/146 (1%) Query: 35 HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APRASPRQS 93 + + T+++Q + WA+ S+ MTFGLACCA+EMM A RYDL+RFG A RA+PRQ+ Sbjct: 11 EENVVFTTLEQAINWAQQSSIWPMTFGLACCAIEMMAAGASRYDLDRFGAGAFRATPRQA 70 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY-YHYSYSVVRGCDRIVPV 152 D+MIVAGT+T KMAS +RR+Y+ MP+P+YVI+MG+C GGG + Y Y VV+G D +VPV Sbjct: 71 DLMIVAGTVTYKMASRVRRLYNMMPDPKYVIAMGACTVGGGPYFKYGYHVVKGVDLVVPV 130 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIR 178 D+YVPGCPP EAL+ G++ +Q KI+ Sbjct: 131 DVYVPGCPPRPEALLEGLMRIQDKIK 156 >gi|302523878|ref|ZP_07276220.1| NADH dehydrogenase subunit I B [Streptomyces sp. AA4] gi|302432773|gb|EFL04589.1| NADH dehydrogenase subunit I B [Streptomyces sp. AA4] Length = 182 Score = 214 bits (544), Expect = 6e-54, Method: Composition-based stats. Identities = 81/149 (54%), Positives = 103/149 (69%), Gaps = 2/149 (1%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89 E G L+ S++ LV WAR SL TFGLACCA EMM RYD+ RFG A+ Sbjct: 4 EEKLPNGILLASLEGLVNWARKNSLWPATFGLACCAFEMMSVGGSRYDIARFGMERFSAT 63 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQ+D+MIVAG +T KMA LR++YDQM EP++V+SMG CA+ GG ++ Y+VV+G D I Sbjct: 64 PRQADLMIVAGRVTQKMAPVLRQIYDQMAEPKWVLSMGVCASSGGMFNN-YAVVQGVDHI 122 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIR 178 VPVD+Y+PGCPP E L+ IL L KI+ Sbjct: 123 VPVDMYLPGCPPRPEMLLDAILKLHAKIQ 151 >gi|239929613|ref|ZP_04686566.1| NADH dehydrogenase subunit B [Streptomyces ghanaensis ATCC 14672] gi|291437937|ref|ZP_06577327.1| NuoB [Streptomyces ghanaensis ATCC 14672] gi|291340832|gb|EFE67788.1| NuoB [Streptomyces ghanaensis ATCC 14672] Length = 184 Score = 214 bits (544), Expect = 7e-54, Method: Composition-based stats. Identities = 82/152 (53%), Positives = 105/152 (69%), Gaps = 2/152 (1%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89 E GFL+T+V+Q W R S+ TFGLACCA+EMM RYDL RFG R S Sbjct: 4 EEKLPSGFLLTTVEQAAGWVRKSSVFPATFGLACCAIEMMTTGAGRYDLARFGMEVFRGS 63 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQ+D+MIVAG ++ KMA LR+VYDQMP P++VISMG CA+ GG ++ Y++V+G D + Sbjct: 64 PRQADLMIVAGRVSQKMAPVLRQVYDQMPNPKWVISMGVCASSGGMFNN-YAIVQGVDHV 122 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181 VPVDIY+PGCPP E L+ IL L +KI+ Sbjct: 123 VPVDIYLPGCPPRPEMLLDAILKLHQKIQNSK 154 >gi|330465203|ref|YP_004402946.1| NADH dehydrogenase subunit B [Verrucosispora maris AB-18-032] gi|328808174|gb|AEB42346.1| NADH dehydrogenase subunit B [Verrucosispora maris AB-18-032] Length = 225 Score = 214 bits (544), Expect = 7e-54, Method: Composition-based stats. Identities = 82/148 (55%), Positives = 109/148 (73%), Gaps = 2/148 (1%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89 E G L+TSV++LV W+R S+ TFGLACCA+EMM A P YD+ R+G RAS Sbjct: 4 EEKLPAGVLLTSVEKLVNWSRKSSVWGATFGLACCAIEMMAAGGPHYDMGRWGMEVFRAS 63 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQ+D+MIVAG ++ KMA LR++YDQM EPR+V+SMG CA+ GG ++ Y++V+G D + Sbjct: 64 PRQADLMIVAGRVSQKMAPVLRQIYDQMAEPRWVLSMGVCASSGGMFNN-YAIVQGVDHV 122 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKI 177 VPVD+Y+PGCPP E LI IL L++KI Sbjct: 123 VPVDMYLPGCPPRPEMLIDAILKLREKI 150 >gi|145596575|ref|YP_001160872.1| NADH-quinone oxidoreductase, B subunit [Salinispora tropica CNB-440] gi|238065041|sp|A4XC37|NUOB2_SALTO RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName: Full=NADH dehydrogenase I subunit B 2; AltName: Full=NDH-1 subunit B 2 gi|145305912|gb|ABP56494.1| NADH-quinone oxidoreductase, B subunit [Salinispora tropica CNB-440] Length = 226 Score = 214 bits (544), Expect = 7e-54, Method: Composition-based stats. Identities = 81/151 (53%), Positives = 108/151 (71%), Gaps = 2/151 (1%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89 E G L+TSV++ V W+R S+ TFGLACCA+EMM A P YD+ R+G RAS Sbjct: 4 EEKLPAGVLLTSVEKFVNWSRKSSVWGATFGLACCAIEMMAAGGPHYDMGRWGMEVFRAS 63 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQ+D+MIVAG ++ KMA LR++YDQM EPR+V+SMG CA+ GG ++ Y++V+G D + Sbjct: 64 PRQADLMIVAGRVSQKMAPVLRQIYDQMAEPRWVLSMGVCASSGGMFNN-YAIVQGVDHV 122 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 VPVD+Y+PGCPP E LI IL L++KI Sbjct: 123 VPVDMYLPGCPPRPEMLIDAILKLREKIMHE 153 >gi|256371181|ref|YP_003109005.1| NADH-quinone oxidoreductase, B subunit [Acidimicrobium ferrooxidans DSM 10331] gi|256007765|gb|ACU53332.1| NADH-quinone oxidoreductase, B subunit [Acidimicrobium ferrooxidans DSM 10331] Length = 180 Score = 214 bits (544), Expect = 7e-54, Method: Composition-based stats. Identities = 83/149 (55%), Positives = 105/149 (70%), Gaps = 2/149 (1%) Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQSDV 95 FL ++ LV WAR S+ TFGLACCA+EMM A +DL RFG RASPRQ+D+ Sbjct: 9 NFLTARLEDLVNWARKSSVWPATFGLACCAIEMMAAGAADFDLARFGMEVFRASPRQADL 68 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155 MIVAG ++ KMA LR+VYDQMPEP++VISMG CA+ GG ++ Y++V+G D IVPVD+Y Sbjct: 69 MIVAGRVSQKMAPVLRQVYDQMPEPKWVISMGVCASSGGMFNN-YAIVQGVDEIVPVDVY 127 Query: 156 VPGCPPTAEALIYGILLLQKKIRRVGNVK 184 PGCPP E LI IL L +KIR ++ Sbjct: 128 APGCPPGPETLIRAILTLHEKIRHTPILR 156 >gi|197116578|ref|YP_002137005.1| trifunctional NADH dehydrogenase subunit I B/C/D [Geobacter bemidjiensis Bem] gi|218528047|sp|B5E972|NUBCD_GEOBB RecName: Full=NADH-quinone oxidoreductase subunit B/C/D; AltName: Full=NADH dehydrogenase I subunit B/C/D; AltName: Full=NDH-1 subunit B/C/D gi|197085938|gb|ACH37209.1| NADH dehydrogenase I, B/C/D subunits [Geobacter bemidjiensis Bem] Length = 794 Score = 214 bits (544), Expect = 7e-54, Method: Composition-based stats. Identities = 78/154 (50%), Positives = 110/154 (71%), Gaps = 2/154 (1%) Query: 26 FSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA 85 S+ + + L+ S+D ++ W R SL M FGL+CC VEMM + RYD+ RFG Sbjct: 1 MSQGDDDKIPENVLLASLDDMINWGRANSLWPMFFGLSCCFVEMMTSFTSRYDVSRFGAE 60 Query: 86 P-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR 144 R +PR+SD+M++AGT+ KMA ++ R+YDQM EP++VISMGSCAN GG Y YSVV+ Sbjct: 61 VLRGTPRESDLMVIAGTVFKKMAPSILRLYDQMAEPKWVISMGSCANSGGMY-DVYSVVQ 119 Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 G ++I+PVD+Y+PGCPP E+ + G++LLQ+KIR Sbjct: 120 GVNQILPVDLYIPGCPPRPESFLEGLMLLQQKIR 153 >gi|86606638|ref|YP_475401.1| NADH dehydrogenase subunit B [Synechococcus sp. JA-3-3Ab] gi|123505801|sp|Q2JT69|NDHK_SYNJA RecName: Full=NAD(P)H-quinone oxidoreductase subunit K; AltName: Full=NAD(P)H dehydrogenase I subunit K; AltName: Full=NDH-1 subunit K; Short=NDH-K gi|86555180|gb|ABD00138.1| NADH-ubiquinone/plastoquinone oxidoreductase, K subunit [Synechococcus sp. JA-3-3Ab] Length = 244 Score = 213 bits (543), Expect = 8e-54, Method: Composition-based stats. Identities = 69/156 (44%), Positives = 108/156 (69%), Gaps = 2/156 (1%) Query: 23 DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82 A ++++++++ ++T+V+ L WA+ SL + +G ACC +E R+D +RF Sbjct: 11 PASAPQVTTDLSN-NVVLTTVNDLYNWAKMSSLWPLLYGTACCFIEFAAMLGSRFDFDRF 69 Query: 83 GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYS 141 G PR+SPR +D++I AGT+T KMA AL ++Y QM EP+YVI+MG+C GG + SY+ Sbjct: 70 GLLPRSSPRTADLIITAGTVTMKMAPALVKLYQQMAEPKYVIAMGACTISGGMFSSDSYT 129 Query: 142 VVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 VRG D+++PVD+Y+PGCPP EA++ I+ L+KKI Sbjct: 130 AVRGVDKLIPVDVYIPGCPPRPEAIMDAIVKLRKKI 165 >gi|86609773|ref|YP_478535.1| NADH dehydrogenase subunit B [Synechococcus sp. JA-2-3B'a(2-13)] gi|123501307|sp|Q2JJA9|NDHK_SYNJB RecName: Full=NAD(P)H-quinone oxidoreductase subunit K; AltName: Full=NAD(P)H dehydrogenase I subunit K; AltName: Full=NDH-1 subunit K; Short=NDH-K gi|86558315|gb|ABD03272.1| NADH-ubiquinone/plastoquinone oxidoreductase, K subunit [Synechococcus sp. JA-2-3B'a(2-13)] Length = 244 Score = 213 bits (543), Expect = 8e-54, Method: Composition-based stats. Identities = 68/145 (46%), Positives = 99/145 (68%), Gaps = 1/145 (0%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93 ++T+V+ L WA+ SL + +G ACC +E R+D +RFG PR+SPR + Sbjct: 21 LSNNVVLTTVNDLYNWAKMSSLWPLLYGTACCFIEFAAMLGSRFDFDRFGLLPRSSPRTA 80 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGCDRIVPV 152 D++I AGT+T KMA AL ++Y QM EP+YVI+MG+C GG + SY+ VRG D+++PV Sbjct: 81 DLIITAGTVTMKMAPALVKLYQQMAEPKYVIAMGACTISGGMFSSDSYTAVRGVDKLIPV 140 Query: 153 DIYVPGCPPTAEALIYGILLLQKKI 177 D+Y+PGCPP EA++ I+ L+KKI Sbjct: 141 DVYIPGCPPRPEAIMDAIVKLRKKI 165 >gi|57238591|ref|YP_179722.1| NADH dehydrogenase subunit B [Campylobacter jejuni RM1221] gi|148925724|ref|ZP_01809412.1| NADH dehydrogenase I chain B [Campylobacter jejuni subsp. jejuni CG8486] gi|205355593|ref|ZP_03222363.1| NADH dehydrogenase I chain B [Campylobacter jejuni subsp. jejuni CG8421] gi|81557394|sp|Q5HSL3|NUOB_CAMJR RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|57167395|gb|AAW36174.1| NADH-quinone oxidoreductase, B subunit [Campylobacter jejuni RM1221] gi|145845734|gb|EDK22825.1| NADH dehydrogenase I chain B [Campylobacter jejuni subsp. jejuni CG8486] gi|205346370|gb|EDZ33003.1| NADH dehydrogenase I chain B [Campylobacter jejuni subsp. jejuni CG8421] gi|315059028|gb|ADT73357.1| NADH-ubiquinone oxidoreductase chain B [Campylobacter jejuni subsp. jejuni S3] Length = 167 Score = 213 bits (542), Expect = 9e-54, Method: Composition-based stats. Identities = 84/147 (57%), Positives = 111/147 (75%), Gaps = 1/147 (0%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 ++TSVD+LV W R+ SL +++GLACCA+EMM A RYD +RFG RASPR S+VMI Sbjct: 14 VVLTSVDKLVQWGRSNSLWALSYGLACCAIEMMAAGGSRYDFDRFGTIFRASPRHSEVMI 73 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 +AGTL K A RR+YDQMP+P++VISMGSCAN GG ++ +YS V+G DRI+PVDIYVP Sbjct: 74 IAGTLCKKHAEFTRRLYDQMPDPKWVISMGSCANTGGMFN-TYSTVQGVDRIIPVDIYVP 132 Query: 158 GCPPTAEALIYGILLLQKKIRRVGNVK 184 GC P E+ + +++LQKKIR+ + Sbjct: 133 GCAPRPESFQFALMILQKKIRKEKASR 159 >gi|57168317|ref|ZP_00367451.1| NADH2 dehydrogenase (ubiquinone) I chain B Cj1578c [Campylobacter coli RM2228] gi|153952278|ref|YP_001398860.1| NADH dehydrogenase subunit B [Campylobacter jejuni subsp. doylei 269.97] gi|157415794|ref|YP_001483050.1| NADH dehydrogenase subunit B [Campylobacter jejuni subsp. jejuni 81116] gi|305432374|ref|ZP_07401536.1| NADH-quinone oxidoreductase subunit B [Campylobacter coli JV20] gi|238055278|sp|A8FNN6|NUOB_CAMJ8 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|254767792|sp|A7H5T0|NUOB_CAMJD RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|57020125|gb|EAL56799.1| NADH2 dehydrogenase (ubiquinone) I chain B Cj1578c [Campylobacter coli RM2228] gi|152939724|gb|ABS44465.1| NADH-quinone oxidoreductase, B subunit [Campylobacter jejuni subsp. doylei 269.97] gi|157386758|gb|ABV53073.1| NADH dehydrogenase I chain B [Campylobacter jejuni subsp. jejuni 81116] gi|304444413|gb|EFM37064.1| NADH-quinone oxidoreductase subunit B [Campylobacter coli JV20] gi|307748433|gb|ADN91703.1| NADH-quinone oxidoreductase subunit B [Campylobacter jejuni subsp. jejuni M1] gi|315929523|gb|EFV08716.1| NADH-quinone oxidoreductase, B subunit [Campylobacter jejuni subsp. jejuni 305] gi|315931258|gb|EFV10228.1| NADH-quinone oxidoreductase, B subunit [Campylobacter jejuni subsp. jejuni 327] Length = 167 Score = 213 bits (542), Expect = 9e-54, Method: Composition-based stats. Identities = 84/147 (57%), Positives = 111/147 (75%), Gaps = 1/147 (0%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 ++TSVD+LV W R+ SL +++GLACCA+EMM A RYD +RFG RASPR S+VMI Sbjct: 14 VVLTSVDKLVQWGRSNSLWALSYGLACCAIEMMAAGGSRYDFDRFGTIFRASPRHSEVMI 73 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 +AGTL K A RR+YDQMP+P++VISMGSCAN GG ++ +YS V+G DRI+PVDIYVP Sbjct: 74 IAGTLCKKHAEFTRRLYDQMPDPKWVISMGSCANTGGMFN-TYSTVQGVDRIIPVDIYVP 132 Query: 158 GCPPTAEALIYGILLLQKKIRRVGNVK 184 GC P E+ + +++LQKKIR+ + Sbjct: 133 GCAPRPESFQFALMILQKKIRKEKASR 159 >gi|86149321|ref|ZP_01067552.1| NADH-quinone oxidoreductase, B subunit [Campylobacter jejuni subsp. jejuni CF93-6] gi|86152325|ref|ZP_01070536.1| NADH-quinone oxidoreductase, B subunit [Campylobacter jejuni subsp. jejuni 260.94] gi|86152543|ref|ZP_01070748.1| nadh-quinone oxidoreductase chain 6 [Campylobacter jejuni subsp. jejuni HB93-13] gi|88596514|ref|ZP_01099751.1| NADH-quinone oxidoreductase, B subunit [Campylobacter jejuni subsp. jejuni 84-25] gi|121613264|ref|YP_001001218.1| NADH dehydrogenase subunit B [Campylobacter jejuni subsp. jejuni 81-176] gi|167006111|ref|ZP_02271869.1| NADH dehydrogenase subunit B [Campylobacter jejuni subsp. jejuni 81-176] gi|218563167|ref|YP_002344947.1| NADH dehydrogenase subunit B [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|283956950|ref|ZP_06374422.1| NADH dehydrogenase I chain B [Campylobacter jejuni subsp. jejuni 1336] gi|315124988|ref|YP_004066992.1| NADH dehydrogenase beta subunit [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|123336622|sp|Q0P850|NUOB_CAMJE RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|238055279|sp|A1W1H7|NUOB_CAMJJ RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|85840103|gb|EAQ57361.1| NADH-quinone oxidoreductase, B subunit [Campylobacter jejuni subsp. jejuni CF93-6] gi|85840814|gb|EAQ58065.1| NADH-quinone oxidoreductase, B subunit [Campylobacter jejuni subsp. jejuni 260.94] gi|85843428|gb|EAQ60638.1| nadh-quinone oxidoreductase chain 6 [Campylobacter jejuni subsp. jejuni HB93-13] gi|87249799|gb|EAQ72758.1| NADH-quinone oxidoreductase, B subunit [Campylobacter jejuni subsp. jejuni 81-176] gi|88191355|gb|EAQ95327.1| NADH-quinone oxidoreductase, B subunit [Campylobacter jejuni subsp. jejuni 84-25] gi|112360874|emb|CAL35675.1| NADH dehydrogenase I chain B [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|283791451|gb|EFC30248.1| NADH dehydrogenase I chain B [Campylobacter jejuni subsp. jejuni 1336] gi|284926773|gb|ADC29125.1| NADH dehydrogenase I chain B [Campylobacter jejuni subsp. jejuni IA3902] gi|315018710|gb|ADT66803.1| NADH dehydrogenase beta subunit [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|315927676|gb|EFV07007.1| NADH-quinone oxidoreductase, B subunit [Campylobacter jejuni subsp. jejuni DFVF1099] Length = 167 Score = 213 bits (542), Expect = 9e-54, Method: Composition-based stats. Identities = 84/147 (57%), Positives = 111/147 (75%), Gaps = 1/147 (0%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 ++TSVD+LV W R+ SL +++GLACCA+EMM A RYD +RFG RASPR S+VMI Sbjct: 14 VVLTSVDKLVQWGRSNSLWALSYGLACCAIEMMAAGGSRYDFDRFGTIFRASPRHSEVMI 73 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 +AGTL K A RR+YDQMP+P++VISMGSCAN GG ++ +YS V+G DRI+PVDIYVP Sbjct: 74 IAGTLCKKHAEFTRRLYDQMPDPKWVISMGSCANTGGMFN-TYSTVQGVDRIIPVDIYVP 132 Query: 158 GCPPTAEALIYGILLLQKKIRRVGNVK 184 GC P E+ + +++LQKKIR+ + Sbjct: 133 GCAPRPESFQFALMILQKKIRKEKASR 159 >gi|158334544|ref|YP_001515716.1| NADH dehydrogenase subunit B [Acaryochloris marina MBIC11017] gi|218527876|sp|B0C6I1|NDHK1_ACAM1 RecName: Full=NAD(P)H-quinone oxidoreductase subunit K 1; AltName: Full=NAD(P)H dehydrogenase I subunit K 1; AltName: Full=NDH-1 subunit K 1; Short=NDH-K 1 gi|158304785|gb|ABW26402.1| proton-translocating NAD(P)H-quinone oxidoreductase, chain B, putative [Acaryochloris marina MBIC11017] Length = 232 Score = 213 bits (542), Expect = 1e-53, Method: Composition-based stats. Identities = 73/157 (46%), Positives = 107/157 (68%), Gaps = 2/157 (1%) Query: 22 VDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLER 81 S+I E++ +++SV L WAR SL + +G ACC +E+ R+D +R Sbjct: 8 NPISQSQIPQELSE-NVILSSVSDLYDWARLSSLWPLMYGTACCFIEIAAMIGSRFDFDR 66 Query: 82 FGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSY 140 FG PR+SPRQ+D++I AGT+T KMA AL R+Y+QMP+P+YVI+MG+C GG + S Sbjct: 67 FGLVPRSSPRQADLIITAGTVTMKMAPALVRLYEQMPDPKYVIAMGACTITGGMFSSDST 126 Query: 141 SVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 + VRG D+++PVD+Y+PGCPP EA++ I+ L+KKI Sbjct: 127 TAVRGVDKLIPVDVYLPGCPPRPEAVMDAIVKLRKKI 163 >gi|223937077|ref|ZP_03628985.1| NADH-quinone oxidoreductase, B subunit [bacterium Ellin514] gi|223894358|gb|EEF60811.1| NADH-quinone oxidoreductase, B subunit [bacterium Ellin514] Length = 169 Score = 213 bits (542), Expect = 1e-53, Method: Composition-based stats. Identities = 81/147 (55%), Positives = 107/147 (72%), Gaps = 2/147 (1%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVM 96 +VT VD + W R SL M GLACCA+E+M A RYD+ RFG R SPRQSDVM Sbjct: 17 VIVTRVDAALNWFRKNSLWPMPMGLACCAIELMAAGASRYDIARFGSEVMRFSPRQSDVM 76 Query: 97 IVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV 156 +VAGT+T KMA A++R+YDQMPEP++VI+MG+CA+ GG Y SY+V++G DRI+PVD+YV Sbjct: 77 VVAGTVTYKMAMAVKRIYDQMPEPKWVIAMGACASTGGMYR-SYAVLQGVDRIIPVDVYV 135 Query: 157 PGCPPTAEALIYGILLLQKKIRRVGNV 183 GCPP EAL+ ++ LQ K+ + + Sbjct: 136 AGCPPRPEALLDALIKLQNKVSKEPTL 162 >gi|220908787|ref|YP_002484098.1| NADH dehydrogenase subunit B [Cyanothece sp. PCC 7425] gi|238065000|sp|B8HQR6|NDHK1_CYAP4 RecName: Full=NAD(P)H-quinone oxidoreductase subunit K 1; AltName: Full=NAD(P)H dehydrogenase I subunit K 1; AltName: Full=NDH-1 subunit K 1; Short=NDH-K 1 gi|219865398|gb|ACL45737.1| NADH-quinone oxidoreductase, B subunit [Cyanothece sp. PCC 7425] Length = 238 Score = 213 bits (542), Expect = 1e-53, Method: Composition-based stats. Identities = 70/152 (46%), Positives = 104/152 (68%), Gaps = 2/152 (1%) Query: 27 SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP 86 + E+ + ++TS++ + +W R SL + +G ACC +E R+D +RFG P Sbjct: 18 PEVPQEL-QENIILTSLNDVYSWCRLSSLWPLMYGTACCFIEFAAMIGSRFDFDRFGLVP 76 Query: 87 RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRG 145 R SPRQ+D++I AGT+T KMA AL ++Y+QMPEP+YVI+MG+C GG + S + VRG Sbjct: 77 RCSPRQADLLITAGTITMKMAPALVKLYEQMPEPKYVIAMGACTITGGMFSTDSPTAVRG 136 Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 D+++PVDIY+PGCPP EA++ I+ L+KKI Sbjct: 137 VDKLIPVDIYLPGCPPRPEAIMDAIVKLRKKI 168 >gi|238062212|ref|ZP_04606921.1| NADH-quinone oxidoreductase, B subunit [Micromonospora sp. ATCC 39149] gi|237884023|gb|EEP72851.1| NADH-quinone oxidoreductase, B subunit [Micromonospora sp. ATCC 39149] Length = 225 Score = 213 bits (542), Expect = 1e-53, Method: Composition-based stats. Identities = 83/148 (56%), Positives = 109/148 (73%), Gaps = 2/148 (1%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89 E G L+TSV++LV W+R S+ TFGLACCA+EMM A P YD+ R+G RAS Sbjct: 4 EEKLPAGVLLTSVEKLVNWSRKSSVWGATFGLACCAIEMMAAGGPHYDMGRWGMEVFRAS 63 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQ+D+MIVAG ++ KMA LR++YDQM EPR+V+SMG CA+ GG ++ Y++V+G D I Sbjct: 64 PRQADLMIVAGRVSQKMAPVLRQIYDQMAEPRWVLSMGVCASSGGMFNN-YAIVQGVDHI 122 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKI 177 VPVD+Y+PGCPP E LI IL L++KI Sbjct: 123 VPVDMYLPGCPPRPEMLIDAILKLREKI 150 >gi|149034570|gb|EDL89307.1| NADH dehydrogenase (ubiquinone) Fe-S protein 7, isoform CRA_c [Rattus norvegicus] Length = 132 Score = 213 bits (542), Expect = 1e-53, Method: Composition-based stats. Identities = 106/127 (83%), Positives = 116/127 (91%) Query: 58 MTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQM 117 MTFGLACCAVEMM + PRYD++RFG RASPRQ+DVMIVAGTLTNKMA ALR+VYDQM Sbjct: 1 MTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQADVMIVAGTLTNKMAPALRKVYDQM 60 Query: 118 PEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 PEPRYV+SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQ+KI Sbjct: 61 PEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQRKI 120 Query: 178 RRVGNVK 184 +R +K Sbjct: 121 KREQKLK 127 >gi|37521948|ref|NP_925325.1| NADH dehydrogenase subunit B [Gloeobacter violaceus PCC 7421] gi|81709608|sp|Q7NI05|NDHK2_GLOVI RecName: Full=NAD(P)H-quinone oxidoreductase subunit K 2; AltName: Full=NAD(P)H dehydrogenase I subunit K 2; AltName: Full=NDH-1 subunit K 2; Short=NDH-K 2 gi|35212947|dbj|BAC90320.1| NADH dehydrogenase subunit K [Gloeobacter violaceus PCC 7421] Length = 249 Score = 213 bits (542), Expect = 1e-53, Method: Composition-based stats. Identities = 69/156 (44%), Positives = 105/156 (67%), Gaps = 2/156 (1%) Query: 23 DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82 + ++SE+++ ++T+++ L WAR S+ + +G ACC +E R+D +RF Sbjct: 14 PPERPEVTSELSN-NVVLTTLNDLYNWARLSSVWPLMYGTACCFIEFAGLIGSRFDFDRF 72 Query: 83 GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYS 141 G PRASPRQ+D++I AGT+T K A AL +Y QMPEP+YVI+MG+C GG + S + Sbjct: 73 GLVPRASPRQADLIITAGTITMKFAPALVTLYQQMPEPKYVIAMGACTITGGMFSTDSPT 132 Query: 142 VVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 VRG D+++PVD+Y+PGCPP EA+ I+ L+KK+ Sbjct: 133 TVRGVDKLIPVDVYIPGCPPRPEAIFDAIIKLRKKM 168 >gi|302864902|ref|YP_003833539.1| NADH-quinone oxidoreductase subunit B [Micromonospora aurantiaca ATCC 27029] gi|315501187|ref|YP_004080074.1| NADH-quinone oxidoreductase, b subunit [Micromonospora sp. L5] gi|302567761|gb|ADL43963.1| NADH-quinone oxidoreductase, B subunit [Micromonospora aurantiaca ATCC 27029] gi|315407806|gb|ADU05923.1| NADH-quinone oxidoreductase, B subunit [Micromonospora sp. L5] Length = 226 Score = 213 bits (542), Expect = 1e-53, Method: Composition-based stats. Identities = 82/151 (54%), Positives = 108/151 (71%), Gaps = 2/151 (1%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89 E G L+TSV++LV W R S+ TFGLACCA+EMM A P YD+ R+G RAS Sbjct: 4 EEKLPSGVLLTSVEKLVNWTRKTSVWGATFGLACCAIEMMAAGGPHYDMGRWGMEVFRAS 63 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQ+D+MIVAG ++ KMA LR++YDQM EPR+VISMG CA+ GG ++ Y++V+G D + Sbjct: 64 PRQADLMIVAGRVSQKMAPVLRQIYDQMAEPRWVISMGVCASSGGMFNN-YAIVQGVDHV 122 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 VPVD+Y+PGCPP E LI +L L++KI Sbjct: 123 VPVDMYLPGCPPRPEMLIDAVLKLREKIMHE 153 >gi|290489748|gb|ADD31258.1| NADH-plastoquinone oxidoreductase subunit K protein [Trochodendron aralioides] Length = 285 Score = 212 bits (541), Expect = 1e-53, Method: Composition-based stats. Identities = 67/154 (43%), Positives = 101/154 (65%), Gaps = 1/154 (0%) Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87 + T + T+ + L W+R SL + +G +CC +E R+D +R+G PR Sbjct: 67 PLLDRTTQNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 126 Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146 +SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG Sbjct: 127 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 186 Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 D+++PV +Y+PGCPP EA++ I L+KK+ R Sbjct: 187 DKLIPVHVYLPGCPPKPEAVMDAITKLRKKVSRE 220 >gi|158317835|ref|YP_001510343.1| NADH dehydrogenase subunit B [Frankia sp. EAN1pec] gi|238065147|sp|A8LCA0|NUOB_FRASN RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|158113240|gb|ABW15437.1| NADH-quinone oxidoreductase, B subunit [Frankia sp. EAN1pec] Length = 264 Score = 212 bits (541), Expect = 1e-53, Method: Composition-based stats. Identities = 81/148 (54%), Positives = 107/148 (72%), Gaps = 2/148 (1%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89 E G L+T+V++L W+R SL TFGLACCA+EMM RYDL RFG RAS Sbjct: 4 EEKLPGGVLLTTVEKLANWSRRSSLWPATFGLACCAIEMMSTGAGRYDLSRFGMEVFRAS 63 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQ+D+MIVAG ++ KMA LR++YDQMPEP++V+SMG CA+ GG ++ Y++V+G D I Sbjct: 64 PRQADLMIVAGRVSQKMAPVLRQIYDQMPEPKWVLSMGVCASSGGMFNN-YAIVQGVDHI 122 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKI 177 VPVD+Y+PGCPP E L+ I+ L +KI Sbjct: 123 VPVDMYLPGCPPRPEMLMDAIVKLHEKI 150 >gi|222824437|ref|YP_002576011.1| NADH-quinone oxidoreductase, B subunit [Campylobacter lari RM2100] gi|222539658|gb|ACM64759.1| NADH-quinone oxidoreductase, B subunit [Campylobacter lari RM2100] Length = 165 Score = 212 bits (541), Expect = 1e-53, Method: Composition-based stats. Identities = 83/154 (53%), Positives = 115/154 (74%), Gaps = 1/154 (0%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP 90 ++ + ++T+VD+LV W R+ SL +++GLACCA+EMM A RYD +RFG RASP Sbjct: 5 QKMNNAPVVLTTVDKLVQWGRSNSLWALSYGLACCAIEMMAAGGARYDFDRFGTIFRASP 64 Query: 91 RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150 RQS+VMI+AGTL+ K A RR+YDQMP+P++VISMGSCAN GG ++ +YS V+G DRI+ Sbjct: 65 RQSEVMIIAGTLSKKHAEFTRRLYDQMPDPKWVISMGSCANTGGMFN-TYSTVQGVDRII 123 Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 PVDIYVPGC P E + +++LQK+IR+ + Sbjct: 124 PVDIYVPGCAPRPETFQFALMILQKRIRKEKASR 157 >gi|162457344|ref|YP_001619711.1| NADH dehydrogenase (ubiquinone) [Sorangium cellulosum 'So ce 56'] gi|238065042|sp|A9G9S9|NUOB2_SORC5 RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName: Full=NADH dehydrogenase I subunit B 2; AltName: Full=NDH-1 subunit B 2 gi|161167926|emb|CAN99231.1| NADH dehydrogenase (ubiquinone) [Sorangium cellulosum 'So ce 56'] Length = 182 Score = 212 bits (541), Expect = 1e-53, Method: Composition-based stats. Identities = 90/156 (57%), Positives = 117/156 (75%), Gaps = 4/156 (2%) Query: 32 EITHKGFLVTSVDQ----LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87 E G + TSVDQ L+ W R+ S+ +M FGLACCA+E+MQ PR DLERFG APR Sbjct: 19 ESDGGGVITTSVDQTVNWLLNWGRSNSVWYMLFGLACCAIELMQTGGPRGDLERFGAAPR 78 Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCD 147 SPR SD+ I+AGTLT KMA+ ++R+YDQM EPR+VISMGSC+N GG + Y+YSV +G D Sbjct: 79 PSPRSSDLFIIAGTLTYKMATRVKRLYDQMSEPRFVISMGSCSNCGGLFQYAYSVCKGVD 138 Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 +I+PVD+YVPGCPP EAL+ G+L +Q+KI+ + Sbjct: 139 QIIPVDVYVPGCPPRPEALLEGLLKIQEKIKSERAL 174 >gi|76801790|ref|YP_326798.1| NADH dehydrogenase-like complex, subunit B [Natronomonas pharaonis DSM 2160] gi|76557655|emb|CAI49238.1| NADH dehydrogenase-like complex, subunit B [Natronomonas pharaonis DSM 2160] Length = 227 Score = 212 bits (541), Expect = 1e-53, Method: Composition-based stats. Identities = 77/183 (42%), Positives = 115/183 (62%), Gaps = 1/183 (0%) Query: 1 MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTF 60 M ++ + Q+ D S++ F++T D+ + W R S+ + F Sbjct: 1 MSSEKLHDTTSTQQARMGDGVDDRFNSKLREAFGSTPFILTKFDKFMNWVRGNSMFMLQF 60 Query: 61 GLACCAVEMMQASMPRYDLERFGF-APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119 G+ACC++EM+ ++DL+RFG PRASPRQ+DV+IV GT+ +K A ++RVYDQMPE Sbjct: 61 GIACCSIEMIHTYAIKHDLDRFGAGVPRASPRQADVIIVPGTIVSKFAPRMKRVYDQMPE 120 Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179 P++V+ MGSC GG + Y+V++G + ++PVDI+VPGCPP EALIYGI LQ++IR Sbjct: 121 PKFVVGMGSCTISGGPFQEGYNVIKGAEEVIPVDIHVPGCPPRPEALIYGIAKLQERIRN 180 Query: 180 VGN 182 Sbjct: 181 GET 183 >gi|206602059|gb|EDZ38541.1| NADH dehydrogenase (ubiquinone), B subunit [Leptospirillum sp. Group II '5-way CG'] Length = 178 Score = 212 bits (541), Expect = 1e-53, Method: Composition-based stats. Identities = 90/146 (61%), Positives = 113/146 (77%), Gaps = 2/146 (1%) Query: 39 LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APRASPRQSDVMI 97 L +V++++ W+R +L MTFGLACCA+EMM A R+D++RFG RASPRQSD+MI Sbjct: 18 LQDAVNEMLNWSRKSALWPMTFGLACCAIEMMGAVASRFDIDRFGAGVFRASPRQSDLMI 77 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGTLT KMA +RR+YDQMPEPRYVI+MGSCA G Y SYSVV+G DRI+PVD+YVP Sbjct: 78 VAGTLTRKMAPVVRRIYDQMPEPRYVIAMGSCATSGNIY-DSYSVVQGVDRIIPVDVYVP 136 Query: 158 GCPPTAEALIYGILLLQKKIRRVGNV 183 GCPP EAL+ G++ LQ+KI + V Sbjct: 137 GCPPRPEALLDGLMKLQEKIMKDRPV 162 >gi|75286712|sp|Q5SD03|NDHK_HUPLU RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K gi|50659999|gb|AAT80721.1| NADH-plastoquinone oxidoreductase subunit K [Huperzia lucidula] Length = 263 Score = 212 bits (541), Expect = 1e-53, Method: Composition-based stats. Identities = 69/155 (44%), Positives = 103/155 (66%), Gaps = 1/155 (0%) Query: 27 SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP 86 S + + T ++T+ + WAR SL + +G +CC +E R D +R+G P Sbjct: 27 SSLLDKTTSNSIVLTTFNDFSNWARLSSLWPLLYGTSCCFIESASLIGSRSDSDRYGLVP 86 Query: 87 RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRG 145 R+SPRQ+D++I AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG Sbjct: 87 RSSPRQADLVITAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRG 146 Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 D+ +PVD+Y+PGCPP EA+I I+ L+K++ + Sbjct: 147 VDKPIPVDVYLPGCPPKPEAIIDAIVKLRKRVAQE 181 >gi|269128612|ref|YP_003301982.1| NADH-quinone oxidoreductase subunit B [Thermomonospora curvata DSM 43183] gi|268313570|gb|ACY99944.1| NADH-quinone oxidoreductase, B subunit [Thermomonospora curvata DSM 43183] Length = 183 Score = 212 bits (541), Expect = 2e-53, Method: Composition-based stats. Identities = 82/152 (53%), Positives = 107/152 (70%), Gaps = 2/152 (1%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR-AS 89 E GFL+T+V+Q+V WAR S TFGLACCA+EMM A PR+D R+G A+ Sbjct: 4 EEKLPSGFLLTTVEQVVGWARRSSTWPATFGLACCAIEMMAAGDPRHDFSRWGMERASAT 63 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQ+D+MIVAG ++ KMA LR++YDQM EP++VI+MG CA+ GG ++ Y+VV+G D I Sbjct: 64 PRQADLMIVAGRVSQKMAPVLRQIYDQMTEPKWVIAMGVCASSGGMFNN-YAVVQGVDHI 122 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181 VPVDIY+PGCPP E LI I+ L KI+ Sbjct: 123 VPVDIYLPGCPPRPEMLIDAIVKLHDKIQNTK 154 >gi|283953809|ref|ZP_06371340.1| NADH-quinone oxidoreductase, B subunit [Campylobacter jejuni subsp. jejuni 414] gi|283794850|gb|EFC33588.1| NADH-quinone oxidoreductase, B subunit [Campylobacter jejuni subsp. jejuni 414] Length = 167 Score = 212 bits (541), Expect = 2e-53, Method: Composition-based stats. Identities = 83/147 (56%), Positives = 111/147 (75%), Gaps = 1/147 (0%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 ++TSVD+LV W R+ SL +++GLACCA+EMM A RYD +RFG RASPR S+VMI Sbjct: 14 VVLTSVDKLVQWGRSNSLWALSYGLACCAIEMMAAGGSRYDFDRFGTIFRASPRHSEVMI 73 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 +AGTL K A RR+YDQMP+P++V+SMGSCAN GG ++ +YS V+G DRI+PVDIYVP Sbjct: 74 IAGTLCKKHAEFTRRLYDQMPDPKWVVSMGSCANTGGMFN-TYSTVQGVDRIIPVDIYVP 132 Query: 158 GCPPTAEALIYGILLLQKKIRRVGNVK 184 GC P E+ + +++LQKKIR+ + Sbjct: 133 GCAPRPESFQFALMILQKKIRKEKASR 159 >gi|220910063|ref|YP_002485374.1| NADH dehydrogenase subunit B [Cyanothece sp. PCC 7425] gi|238065001|sp|B8HLE8|NDHK2_CYAP4 RecName: Full=NAD(P)H-quinone oxidoreductase subunit K 2; AltName: Full=NAD(P)H dehydrogenase I subunit K 2; AltName: Full=NDH-1 subunit K 2; Short=NDH-K 2 gi|219866674|gb|ACL47013.1| NADH-quinone oxidoreductase, B subunit [Cyanothece sp. PCC 7425] Length = 259 Score = 212 bits (541), Expect = 2e-53, Method: Composition-based stats. Identities = 70/158 (44%), Positives = 107/158 (67%), Gaps = 2/158 (1%) Query: 21 KVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLE 80 + + + E++ ++TS+D + WAR S+ + +G ACC +E R+D+E Sbjct: 10 RNPISSAEVPPELSE-NIILTSLDDIYNWARISSIYPLMYGTACCFIEFAAMIASRFDME 68 Query: 81 RFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YS 139 RFG PRASPRQ+D++I+AGTLT +MA RR+YDQMPEP+YVI+MG+C GG + S Sbjct: 69 RFGMFPRASPRQADLIILAGTLTMQMAVPTRRLYDQMPEPKYVIAMGACMITGGMFSADS 128 Query: 140 YSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 + +RG D+++P+D+Y+PGCPP EA++ + L+KKI Sbjct: 129 PTALRGADKLLPIDVYIPGCPPRPEAILDAVTKLRKKI 166 >gi|328884313|emb|CCA57552.1| NADH-ubiquinone oxidoreductase chain B [Streptomyces venezuelae ATCC 10712] Length = 184 Score = 212 bits (541), Expect = 2e-53, Method: Composition-based stats. Identities = 83/149 (55%), Positives = 105/149 (70%), Gaps = 2/149 (1%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89 E GFL+T+V+Q W R S+ TFGLACCA+EMM RYDL RFG R S Sbjct: 4 EEKLPSGFLLTTVEQAAGWVRKASVFPATFGLACCAIEMMTTGAGRYDLARFGMEVFRGS 63 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQ+D+MIVAG ++ KMA LR+VYDQMP P++VISMG CA+ GG ++ Y++V+G D I Sbjct: 64 PRQADLMIVAGRVSQKMAPVLRQVYDQMPNPKWVISMGVCASSGGMFNN-YAIVQGVDHI 122 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIR 178 VPVDIY+PGCPP E L+ IL L +KI+ Sbjct: 123 VPVDIYLPGCPPRPEMLLDAILKLHQKIQ 151 >gi|150375773|ref|YP_001312369.1| NADH dehydrogenase subunit B [Sinorhizobium medicae WSM419] gi|150030320|gb|ABR62436.1| NADH-quinone oxidoreductase, B subunit [Sinorhizobium medicae WSM419] Length = 167 Score = 212 bits (541), Expect = 2e-53, Method: Composition-based stats. Identities = 81/148 (54%), Positives = 112/148 (75%), Gaps = 1/148 (0%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP 90 ++ L T+ + +++W+R +L TFG+ACCA+EM+ A RYDL+RFG R SP Sbjct: 5 NDAIRDSVLFTTAESIISWSRRSALWPETFGIACCAIEMISAGCARYDLDRFGVVFRPSP 64 Query: 91 RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150 RQSDVMI+AGT+T K A +RR+YDQMPEPR+VI+MG+CA GG Y+ +Y+VV+G + V Sbjct: 65 RQSDVMIIAGTVTRKFAPVVRRLYDQMPEPRWVIAMGTCAISGGVYN-TYAVVQGSETFV 123 Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIR 178 PVD++VPGCPP EAL++G LLLQ+KI+ Sbjct: 124 PVDVHVPGCPPRPEALMHGFLLLQEKIK 151 >gi|154795234|ref|YP_209525.2| NADH dehydrogenase subunit K [Huperzia lucidula] Length = 242 Score = 212 bits (540), Expect = 2e-53, Method: Composition-based stats. Identities = 69/155 (44%), Positives = 103/155 (66%), Gaps = 1/155 (0%) Query: 27 SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP 86 S + + T ++T+ + WAR SL + +G +CC +E R D +R+G P Sbjct: 6 SSLLDKTTSNSIVLTTFNDFSNWARLSSLWPLLYGTSCCFIESASLIGSRSDSDRYGLVP 65 Query: 87 RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRG 145 R+SPRQ+D++I AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG Sbjct: 66 RSSPRQADLVITAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRG 125 Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 D+ +PVD+Y+PGCPP EA+I I+ L+K++ + Sbjct: 126 VDKPIPVDVYLPGCPPKPEAIIDAIVKLRKRVAQE 160 >gi|289641426|ref|ZP_06473590.1| NADH-quinone oxidoreductase, B subunit [Frankia symbiont of Datisca glomerata] gi|289508762|gb|EFD29697.1| NADH-quinone oxidoreductase, B subunit [Frankia symbiont of Datisca glomerata] Length = 267 Score = 212 bits (540), Expect = 2e-53, Method: Composition-based stats. Identities = 81/148 (54%), Positives = 107/148 (72%), Gaps = 2/148 (1%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89 E G L+T+V+++ W+R SL TFGLACCA+EMM RYDL RFG RAS Sbjct: 4 EEKLPGGLLLTTVEKMANWSRRSSLWPATFGLACCAIEMMSTGAGRYDLARFGMEVFRAS 63 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQ+D+MIVAG ++ KMA LR++YDQMPEP++V+SMG CA+ GG ++ Y++V+G D I Sbjct: 64 PRQADLMIVAGRVSQKMAPVLRQIYDQMPEPKWVLSMGVCASSGGMFNN-YAIVQGVDHI 122 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKI 177 VPVD+Y+PGCPP E L+ IL L +KI Sbjct: 123 VPVDMYLPGCPPRPEMLMDAILKLHEKI 150 >gi|238927268|ref|ZP_04659028.1| proton-translocating NADH-ubiquinone oxidoreductase, subunit B [Selenomonas flueggei ATCC 43531] gi|238884855|gb|EEQ48493.1| proton-translocating NADH-ubiquinone oxidoreductase, subunit B [Selenomonas flueggei ATCC 43531] Length = 179 Score = 212 bits (540), Expect = 2e-53, Method: Composition-based stats. Identities = 79/161 (49%), Positives = 110/161 (68%), Gaps = 1/161 (0%) Query: 25 DFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF 84 + + E + V +D+L+ WA S+ ++ GLACCA+EMM + R+DL RFG+ Sbjct: 2 EIAERVPESLRENVFVVKLDELLRWAHANSIWPLSSGLACCAIEMMTTATARFDLARFGY 61 Query: 85 A-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVV 143 R PRQ+D+ IVAGTLT KMA A+ R+Y++MPEP+YVI+MG+CA GG + SYSVV Sbjct: 62 EVFRPCPRQADLFIVAGTLTWKMAPAVVRLYEEMPEPKYVIAMGACAIAGGPFADSYSVV 121 Query: 144 RGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 G D ++PVD+Y+PGCPP EALI G+L L++KI V+ Sbjct: 122 SGVDELLPVDVYIPGCPPRPEALIDGMLKLREKILHPERVR 162 >gi|182436776|ref|YP_001824495.1| NADH dehydrogenase subunit B [Streptomyces griseus subsp. griseus NBRC 13350] gi|326777371|ref|ZP_08236636.1| NAD(P)H-quinone oxidoreductase subunit K [Streptomyces cf. griseus XylebKG-1] gi|238065022|sp|B1W518|NUOB1_STRGG RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName: Full=NADH dehydrogenase I subunit B 1; AltName: Full=NDH-1 subunit B 1 gi|178465292|dbj|BAG19812.1| putative NADH dehydrogenase chain B [Streptomyces griseus subsp. griseus NBRC 13350] gi|326657704|gb|EGE42550.1| NAD(P)H-quinone oxidoreductase subunit K [Streptomyces cf. griseus XylebKG-1] Length = 184 Score = 212 bits (540), Expect = 2e-53, Method: Composition-based stats. Identities = 82/149 (55%), Positives = 105/149 (70%), Gaps = 2/149 (1%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89 E GF++T+V+Q W R S+ TFGLACCA+EMM RYDL RFG R S Sbjct: 4 EEKLPSGFVLTTVEQAAGWVRKSSVFPATFGLACCAIEMMTTGAGRYDLARFGMEVFRGS 63 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQ+D+MIVAG ++ KMA LR+VYDQMP P++VISMG CA+ GG ++ Y++V+G D I Sbjct: 64 PRQADLMIVAGRVSQKMAPVLRQVYDQMPNPKWVISMGVCASSGGMFNN-YAIVQGVDHI 122 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIR 178 VPVDIY+PGCPP E L+ IL L +KI+ Sbjct: 123 VPVDIYLPGCPPRPEMLLDAILKLHQKIQ 151 >gi|131324|sp|P15602|NDUS7_PARTE RecName: Full=NADH-ubiquinone oxidoreductase 20 kDa subunit gi|578753|emb|CAA34045.1| unnamed protein product [Paramecium aurelia] Length = 156 Score = 212 bits (539), Expect = 2e-53, Method: Composition-based stats. Identities = 94/152 (61%), Positives = 121/152 (79%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 I FL S + L++WAR GS +TFGLACCA+EMM A++ RYD +RFG RA+PRQ Sbjct: 2 ILKADFLKLSANNLISWARQGSFWPLTFGLACCALEMMHATVSRYDFDRFGVIFRATPRQ 61 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 +D++IVAGT+TNKMA ALRR+YDQ +P++V+SMGSCANGGGYYHYSY+VV+GCD+I+PV Sbjct: 62 ADLIIVAGTVTNKMAPALRRLYDQTADPKWVLSMGSCANGGGYYHYSYAVVKGCDKIIPV 121 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 D+ P CPPTAEAL +G+L LQK + + N K Sbjct: 122 DMLCPRCPPTAEALFFGVLQLQKTLMKTINEK 153 >gi|295837124|ref|ZP_06824057.1| NADH-quinone oxidoreductase, B subunit [Streptomyces sp. SPB74] gi|318057842|ref|ZP_07976565.1| NADH dehydrogenase subunit B [Streptomyces sp. SA3_actG] gi|318078940|ref|ZP_07986272.1| NADH dehydrogenase subunit B [Streptomyces sp. SA3_actF] gi|333025118|ref|ZP_08453182.1| putative NADH dehydrogenase subunit B [Streptomyces sp. Tu6071] gi|197697234|gb|EDY44167.1| NADH-quinone oxidoreductase, B subunit [Streptomyces sp. SPB74] gi|332744970|gb|EGJ75411.1| putative NADH dehydrogenase subunit B [Streptomyces sp. Tu6071] Length = 184 Score = 212 bits (539), Expect = 3e-53, Method: Composition-based stats. Identities = 82/152 (53%), Positives = 105/152 (69%), Gaps = 2/152 (1%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89 E GFL+T+V+Q W R S+ TFGLACCA+EMM RYDL RFG R S Sbjct: 4 EEKLPSGFLLTTVEQAAGWVRKSSMFPATFGLACCAIEMMTTGAGRYDLARFGMEVFRGS 63 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQ+D+MIVAG ++ KMA LR+VYDQMP P++VISMG CA+ GG ++ Y++V+G D + Sbjct: 64 PRQADLMIVAGRVSQKMAPVLRQVYDQMPNPKWVISMGVCASSGGMFNN-YAIVQGVDHV 122 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181 VPVDIY+PGCPP E LI IL L +K++ Sbjct: 123 VPVDIYLPGCPPRPEMLIDAILKLHQKVQGTK 154 >gi|215428603|ref|ZP_03426522.1| NADH dehydrogenase subunit C [Mycobacterium tuberculosis T92] Length = 420 Score = 211 bits (538), Expect = 3e-53, Method: Composition-based stats. Identities = 74/151 (49%), Positives = 110/151 (72%), Gaps = 2/151 (1%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89 E G L+++V+++ + R SL TFGLACCA+EMM + PR+D+ RFG A+ Sbjct: 4 EEQLPGGILLSTVEKVAGYVRKNSLWPATFGLACCAIEMMATAGPRFDIARFGMERFSAT 63 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQ+D+MIVAG ++ KMA LR++YDQM EP++V++MG CA+ GG ++ Y++V+G D + Sbjct: 64 PRQADLMIVAGRVSQKMAPVLRQIYDQMAEPKWVLAMGVCASSGGMFNN-YAIVQGVDHV 122 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 VPVDIY+PGCPP E L++ IL L +KI+++ Sbjct: 123 VPVDIYLPGCPPRPEMLLHAILKLHEKIQQM 153 >gi|21222946|ref|NP_628725.1| NADH dehydrogenase subunit B [Streptomyces coelicolor A3(2)] gi|256785940|ref|ZP_05524371.1| NADH dehydrogenase subunit B [Streptomyces lividans TK24] gi|329935996|ref|ZP_08285796.1| NADH dehydrogenase subunit B [Streptomyces griseoaurantiacus M045] gi|81625663|sp|Q9XAQ5|NUOB1_STRCO RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName: Full=NADH dehydrogenase I subunit B 1; AltName: Full=NDH-1 subunit B 1 gi|5042276|emb|CAB44530.1| NuoB, NADH dehydrogenase subunit [Streptomyces coelicolor A3(2)] gi|329304474|gb|EGG48352.1| NADH dehydrogenase subunit B [Streptomyces griseoaurantiacus M045] Length = 184 Score = 211 bits (538), Expect = 3e-53, Method: Composition-based stats. Identities = 82/149 (55%), Positives = 105/149 (70%), Gaps = 2/149 (1%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89 E GFL+T+V+Q W R S+ TFGLACCA+EMM RYDL RFG R S Sbjct: 4 EEKLPSGFLLTTVEQAAGWVRKSSVFPATFGLACCAIEMMTTGAGRYDLARFGMEVFRGS 63 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQ+D+MIVAG ++ KMA LR+VYDQMP P++VISMG CA+ GG ++ Y++V+G D + Sbjct: 64 PRQADLMIVAGRVSQKMAPVLRQVYDQMPNPKWVISMGVCASSGGMFNN-YAIVQGVDHV 122 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIR 178 VPVDIY+PGCPP E L+ IL L +KI+ Sbjct: 123 VPVDIYLPGCPPRPEMLMDAILKLHQKIQ 151 >gi|302559106|ref|ZP_07311448.1| NADH-quinone oxidoreductase, B subunit [Streptomyces griseoflavus Tu4000] gi|302476724|gb|EFL39817.1| NADH-quinone oxidoreductase, B subunit [Streptomyces griseoflavus Tu4000] Length = 184 Score = 211 bits (538), Expect = 3e-53, Method: Composition-based stats. Identities = 82/149 (55%), Positives = 105/149 (70%), Gaps = 2/149 (1%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89 E GFL+T+V+Q W R S+ TFGLACCA+EMM RYDL RFG R S Sbjct: 4 EEKLPSGFLLTTVEQAAGWVRKSSMFPATFGLACCAIEMMTTGAGRYDLARFGMEVFRGS 63 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQ+D+MIVAG ++ KMA LR+VYDQMP P++VISMG CA+ GG ++ Y++V+G D + Sbjct: 64 PRQADLMIVAGRVSQKMAPVLRQVYDQMPNPKWVISMGVCASSGGMFNN-YAIVQGVDHV 122 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIR 178 VPVDIY+PGCPP E L+ IL L +KI+ Sbjct: 123 VPVDIYLPGCPPRPEMLMDAILKLHQKIQ 151 >gi|72163093|ref|YP_290750.1| NADH dehydrogenase subunit B [Thermobifida fusca YX] gi|123628754|sp|Q47LE5|NUOB_THEFY RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|71916825|gb|AAZ56727.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit [Thermobifida fusca YX] Length = 185 Score = 211 bits (538), Expect = 3e-53, Method: Composition-based stats. Identities = 78/152 (51%), Positives = 106/152 (69%), Gaps = 2/152 (1%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89 E G L+T+V+Q+V + R S+ TFGLACCA+EMM A PR+D+ RFG A+ Sbjct: 4 EEKLPSGVLLTTVEQIVGFVRKTSMWPATFGLACCAIEMMAAGGPRFDIARFGMERFSAT 63 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQ+D+MIVAG ++ KMA LR +YDQM EP++VI+MG CA+ GG ++ Y++V+G D I Sbjct: 64 PRQADLMIVAGRVSQKMAPVLRTIYDQMAEPKWVIAMGVCASSGGMFNN-YAIVQGVDHI 122 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181 VPVDIY+PGCPP E L+ IL L K++ Sbjct: 123 VPVDIYLPGCPPRPEMLLDAILKLHDKVQNTK 154 >gi|212550775|ref|YP_002309092.1| NADH dehydrogenase I subunit B [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] gi|238065056|sp|B6YR59|NUOB_AZOPC RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|212549013|dbj|BAG83681.1| NADH dehydrogenase I subunit B [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] Length = 191 Score = 211 bits (538), Expect = 3e-53, Method: Composition-based stats. Identities = 67/161 (41%), Positives = 101/161 (62%), Gaps = 3/161 (1%) Query: 21 KVDADFSRISSEI--THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78 + + E+ + ++ L+ W R+ S+ +TF +CC +E M RYD Sbjct: 7 RDNEYLEEYLKELWGNGANIAIAKLNDLINWGRSNSVWPLTFATSCCGIEFMCLGAARYD 66 Query: 79 LERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137 RFG+ R SPRQ+DV+ GT+ +KMA L+R+YDQM EP+YVI++GSCA GG + Sbjct: 67 FARFGWEVTRNSPRQADVVFCCGTIVHKMAPVLKRLYDQMSEPKYVIALGSCAISGGPFK 126 Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 SY + G D+I+PVD+Y+PGCPP +A+IYG++ L +KI+ Sbjct: 127 SSYHTIMGIDKIIPVDVYIPGCPPRPDAMIYGMIQLARKIK 167 >gi|29831381|ref|NP_826015.1| NADH dehydrogenase subunit B [Streptomyces avermitilis MA-4680] gi|81718124|sp|Q82DY0|NUOB1_STRAW RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName: Full=NADH dehydrogenase I subunit B 1; AltName: Full=NDH-1 subunit B 1 gi|29608496|dbj|BAC72550.1| putative NADH dehydrogenase I chain B (complex I) [Streptomyces avermitilis MA-4680] Length = 184 Score = 211 bits (538), Expect = 3e-53, Method: Composition-based stats. Identities = 84/149 (56%), Positives = 105/149 (70%), Gaps = 2/149 (1%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89 E GFL+T+V+Q W R S+ TFGLACCA+EMM RYDL RFG R S Sbjct: 4 EEKLPSGFLLTTVEQAAGWVRKASVFPATFGLACCAIEMMTTGAGRYDLARFGMEVFRGS 63 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQ+D+MIVAG ++ KMA LR+VYDQMP P++VISMG CA+ GG ++ Y++V+G D I Sbjct: 64 PRQADLMIVAGRVSQKMAPVLRQVYDQMPNPKWVISMGVCASSGGMFNN-YAIVQGVDHI 122 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIR 178 VPVDIY+PGCPP E LI IL L +KI+ Sbjct: 123 VPVDIYLPGCPPRPEMLIDAILKLHQKIQ 151 >gi|320009203|gb|ADW04053.1| NADH-quinone oxidoreductase, B subunit [Streptomyces flavogriseus ATCC 33331] Length = 184 Score = 211 bits (538), Expect = 3e-53, Method: Composition-based stats. Identities = 83/149 (55%), Positives = 105/149 (70%), Gaps = 2/149 (1%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89 E GF++T+V+Q W R S+ TFGLACCA+EMM RYDL RFG R S Sbjct: 4 EEKLPSGFVLTTVEQAAGWVRKSSVFPATFGLACCAIEMMTTGAGRYDLARFGMEVFRGS 63 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQ+D+MIVAG ++ KMA LR+VYDQMP P++VISMG CA+ GG ++ Y++V+G D I Sbjct: 64 PRQADLMIVAGRVSQKMAPVLRQVYDQMPSPKWVISMGVCASSGGMFNN-YAIVQGVDHI 122 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIR 178 VPVDIY+PGCPP E LI IL L +KI+ Sbjct: 123 VPVDIYLPGCPPRPEMLIDAILKLHQKIQ 151 >gi|297192787|ref|ZP_06910185.1| NADH dehydrogenase subunit B (NuoB) [Streptomyces pristinaespiralis ATCC 25486] gi|197721026|gb|EDY64934.1| NADH dehydrogenase subunit B (NuoB) [Streptomyces pristinaespiralis ATCC 25486] Length = 184 Score = 211 bits (538), Expect = 3e-53, Method: Composition-based stats. Identities = 83/149 (55%), Positives = 105/149 (70%), Gaps = 2/149 (1%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89 E GFL+T+V+Q W R S+ TFGLACCA+EMM RYDL RFG R S Sbjct: 4 EEKLPSGFLLTTVEQAAGWVRKSSVFPATFGLACCAIEMMTTGAGRYDLARFGMEVFRGS 63 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQ+D+MIVAG ++ KMA LR+VYDQMP P++VISMG CA+ GG ++ Y++V+G D I Sbjct: 64 PRQADLMIVAGRVSQKMAPVLRQVYDQMPNPKWVISMGVCASSGGMFNN-YAIVQGVDHI 122 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIR 178 VPVDIY+PGCPP E L+ IL L +KI+ Sbjct: 123 VPVDIYLPGCPPRPEMLMDAILKLHQKIQ 151 >gi|68565803|sp|Q85FL6|NDHK_ADICA RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K gi|48476003|gb|AAP29396.2| NADH dehydrogenase subunit K [Adiantum capillus-veneris] Length = 250 Score = 211 bits (538), Expect = 3e-53, Method: Composition-based stats. Identities = 67/149 (44%), Positives = 98/149 (65%), Gaps = 1/149 (0%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93 + S+ W+R SL + +G +CC +E R+D +R+G PR+SPRQ+ Sbjct: 37 MSDSIFMASISDFSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 96 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGCDRIVPV 152 D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++PV Sbjct: 97 DLIVTAGTITMKMAPSLIRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 156 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVG 181 DIY+PGCPP EA++ + L+KKI R Sbjct: 157 DIYLPGCPPKPEAIMDAVTKLRKKIARNR 185 >gi|298373133|ref|ZP_06983123.1| NADH dehydrogenase I, B subunit [Bacteroidetes oral taxon 274 str. F0058] gi|298276037|gb|EFI17588.1| NADH dehydrogenase I, B subunit [Bacteroidetes oral taxon 274 str. F0058] Length = 204 Score = 211 bits (538), Expect = 3e-53, Method: Composition-based stats. Identities = 69/161 (42%), Positives = 102/161 (63%), Gaps = 3/161 (1%) Query: 21 KVDADFSRISSEITHKGF--LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78 K + + ++ G + +D ++ W R+ S+ +TF +CC +E M R+D Sbjct: 17 KDNEYLEQYVEQLREGGVNVAIAKLDDIINWGRSNSVWPLTFATSCCGIEFMSLGAARFD 76 Query: 79 LERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137 RFG+ R SPRQ+DV+ GT+ +KMA L+R+YDQM EP+YVI++G CA GG + Sbjct: 77 FSRFGWEVTRNSPRQADVVFCFGTIVHKMAPVLKRLYDQMSEPKYVIAVGGCAISGGPFK 136 Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 SY V G D+I+PVD+YVPGCPP+ A+IYG+L L +KI+ Sbjct: 137 KSYHTVMGIDQIIPVDVYVPGCPPSPNAIIYGMLQLSRKIK 177 >gi|258651217|ref|YP_003200373.1| NADH dehydrogenase subunit B [Nakamurella multipartita DSM 44233] gi|258554442|gb|ACV77384.1| NADH-quinone oxidoreductase, B subunit [Nakamurella multipartita DSM 44233] Length = 199 Score = 211 bits (538), Expect = 3e-53, Method: Composition-based stats. Identities = 84/148 (56%), Positives = 106/148 (71%), Gaps = 2/148 (1%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89 E G L+TSV++LV W R SL TFGLACCA+EMM PRYDL RFG RAS Sbjct: 4 EEKLPNGVLLTSVEKLVNWTRKASLFPATFGLACCAIEMMTTGAPRYDLGRFGMEVFRAS 63 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQ+D+MIVAG ++ KMA LR++YDQM EP++V+SMG CA+ GG ++ Y++V+G D + Sbjct: 64 PRQADLMIVAGRVSQKMAPVLRQIYDQMAEPKWVLSMGVCASSGGMFNN-YAIVQGVDHV 122 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKI 177 VPVD+Y+PGCPP E LI IL L KI Sbjct: 123 VPVDMYLPGCPPRPEMLIDAILKLHAKI 150 >gi|163783891|ref|ZP_02178866.1| NADH dehydrogenase I chain B [Hydrogenivirga sp. 128-5-R1-1] gi|159880835|gb|EDP74364.1| NADH dehydrogenase I chain B [Hydrogenivirga sp. 128-5-R1-1] Length = 172 Score = 211 bits (537), Expect = 4e-53, Method: Composition-based stats. Identities = 79/152 (51%), Positives = 114/152 (75%), Gaps = 1/152 (0%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 + + G ++T+ +++++W R SL ++ GLACCA+EMM + R+D +R G R SPRQ Sbjct: 4 MNNNGIILTTAEEVLSWGRRNSLWPVSIGLACCAIEMMHTAASRFDTDRLGIIFRGSPRQ 63 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 SDV+IVAGT+ NK+A L+ +YDQMP+P++VISMG CA+ GG + +YS ++G DRI+PV Sbjct: 64 SDVLIVAGTVVNKVAPMLKLIYDQMPDPKWVISMGGCASAGGPFP-TYSTLQGVDRIIPV 122 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 D+YVPGCPPT +AL++GIL LQKKI+ K Sbjct: 123 DVYVPGCPPTPQALLWGILELQKKIKAKREGK 154 >gi|304437258|ref|ZP_07397218.1| NADH-quinone oxidoreductase subunit B [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304369750|gb|EFM23415.1| NADH-quinone oxidoreductase subunit B [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 179 Score = 211 bits (537), Expect = 4e-53, Method: Composition-based stats. Identities = 79/161 (49%), Positives = 110/161 (68%), Gaps = 1/161 (0%) Query: 25 DFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF 84 + + E + V +D+L+ WA S+ ++ GLACCA+EMM + R+DL RFG+ Sbjct: 2 EIAERVPECLRENVFVVKLDELLRWAHANSVWPLSSGLACCAIEMMTTATARFDLARFGY 61 Query: 85 A-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVV 143 R PRQ+D+ IVAGTLT KMA A+ R+Y++MPEP+YVI+MG+CA GG + SYSVV Sbjct: 62 EVFRPCPRQADLFIVAGTLTWKMAPAVVRLYEEMPEPKYVIAMGACAIAGGPFADSYSVV 121 Query: 144 RGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 G D ++PVD+Y+PGCPP EALI G+L L++KI V+ Sbjct: 122 SGVDELLPVDVYIPGCPPRPEALIDGMLKLREKILHPERVR 162 >gi|288917184|ref|ZP_06411553.1| NADH-quinone oxidoreductase, B subunit [Frankia sp. EUN1f] gi|288351375|gb|EFC85583.1| NADH-quinone oxidoreductase, B subunit [Frankia sp. EUN1f] Length = 264 Score = 211 bits (537), Expect = 4e-53, Method: Composition-based stats. Identities = 81/148 (54%), Positives = 106/148 (71%), Gaps = 2/148 (1%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89 E G L+T+V+ L W+R SL TFGLACCA+EMM RYDL RFG RAS Sbjct: 4 EEKLPGGVLLTTVEMLANWSRRSSLWPATFGLACCAIEMMSTGAGRYDLSRFGMEVFRAS 63 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQ+D+MIVAG ++ KMA LR++YDQMPEP++V+SMG CA+ GG ++ Y++V+G D I Sbjct: 64 PRQADLMIVAGRVSQKMAPVLRQIYDQMPEPKWVLSMGVCASSGGMFNN-YAIVQGVDHI 122 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKI 177 VPVD+Y+PGCPP E L+ I+ L +KI Sbjct: 123 VPVDMYLPGCPPRPEMLMDAIIKLHEKI 150 >gi|8928600|ref|NP_059405.1| NADH dehydrogenase subunit 10 [Paramecium aurelia] Length = 154 Score = 211 bits (537), Expect = 4e-53, Method: Composition-based stats. Identities = 93/147 (63%), Positives = 120/147 (81%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 FL S + L++WAR GS +TFGLACCA+EMM A++ RYD +RFG RA+PRQ+D++I Sbjct: 5 FLKLSANNLISWARQGSFWPLTFGLACCALEMMHATVSRYDFDRFGVIFRATPRQADLII 64 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGT+TNKMA ALRR+YDQ +P++V+SMGSCANGGGYYHYSY+VV+GCD+I+PVD+ P Sbjct: 65 VAGTVTNKMAPALRRLYDQTADPKWVLSMGSCANGGGYYHYSYAVVKGCDKIIPVDMLCP 124 Query: 158 GCPPTAEALIYGILLLQKKIRRVGNVK 184 CPPTAEAL +G+L LQK + + N K Sbjct: 125 RCPPTAEALFFGVLQLQKTLMKTINEK 151 >gi|239943528|ref|ZP_04695465.1| putative NADH dehydrogenase chain B [Streptomyces roseosporus NRRL 15998] gi|239989982|ref|ZP_04710646.1| putative NADH dehydrogenase chain B [Streptomyces roseosporus NRRL 11379] Length = 226 Score = 210 bits (536), Expect = 5e-53, Method: Composition-based stats. Identities = 85/182 (46%), Positives = 112/182 (61%), Gaps = 2/182 (1%) Query: 1 MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVT-SVDQLVTWARTGSLMWMT 59 MGLT+ + D + L + ++ W R SL Sbjct: 1 MGLTSRPTPASQQPAPPLPPAADPVLLPEPKRLGVLSRLAPEPMKVVLNWGRRYSLWVFN 60 Query: 60 FGLACCAVEMMQASMPRYDLERFGFAPR-ASPRQSDVMIVAGTLTNKMASALRRVYDQMP 118 FGLACCA+E + ASM R+D R G P PRQ+D+MIV+GT+T+KMA A++R+Y+QMP Sbjct: 61 FGLACCAIEFIAASMARHDFIRLGVIPFAPGPRQADLMIVSGTVTDKMAPAVKRLYEQMP 120 Query: 119 EPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 EP+YVIS G+C+N GG Y SYSV +G D+I+PVD+YVPGCPP EAL+ GIL LQ+KI Sbjct: 121 EPKYVISFGACSNCGGPYWDSYSVTKGVDQIIPVDVYVPGCPPRPEALLQGILKLQEKIA 180 Query: 179 RV 180 R Sbjct: 181 RE 182 >gi|294630797|ref|ZP_06709357.1| NADH-quinone oxidoreductase, B subunit [Streptomyces sp. e14] gi|292834130|gb|EFF92479.1| NADH-quinone oxidoreductase, B subunit [Streptomyces sp. e14] Length = 184 Score = 210 bits (536), Expect = 5e-53, Method: Composition-based stats. Identities = 83/152 (54%), Positives = 105/152 (69%), Gaps = 2/152 (1%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89 E GFL+T+V+Q W R S+ TFGLACCA+EMM RYDL RFG R S Sbjct: 4 EEKLPSGFLLTTVEQAAGWVRKASVFPATFGLACCAIEMMTTGAGRYDLARFGMEVFRGS 63 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQ+D+MIVAG ++ KMA LR+VYDQMP P++VISMG CA+ GG ++ Y++V+G D I Sbjct: 64 PRQADLMIVAGRVSQKMAPVLRQVYDQMPNPKWVISMGVCASSGGMFNN-YAIVQGVDHI 122 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181 VPVDIY+PGCPP E L+ IL L +KI+ Sbjct: 123 VPVDIYLPGCPPRPEMLMDAILKLHQKIQSTK 154 >gi|116624397|ref|YP_826553.1| NADH dehydrogenase subunit B [Candidatus Solibacter usitatus Ellin6076] gi|122252953|sp|Q01VP7|NUOB2_SOLUE RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName: Full=NADH dehydrogenase I subunit B 2; AltName: Full=NDH-1 subunit B 2 gi|116227559|gb|ABJ86268.1| NADH-quinone oxidoreductase, B subunit [Candidatus Solibacter usitatus Ellin6076] Length = 184 Score = 210 bits (536), Expect = 5e-53, Method: Composition-based stats. Identities = 78/181 (43%), Positives = 122/181 (67%), Gaps = 4/181 (2%) Query: 6 VNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACC 65 + + + S + +VD ++ ++G ++T++D V WAR S+ MTFGLACC Sbjct: 1 MEKPMASSGPAELFTRVDDYSVANAAAAANEGIVMTTLDAAVNWARKNSIWPMTFGLACC 60 Query: 66 AVEMMQASMPRYDLERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 A+EMM S R+D+ RFG R SPRQSD+MI+AG ++NKMA +R +Y QMPEP++ I Sbjct: 61 AIEMMSMSASRFDIARFGAEVFRGSPRQSDLMIIAGRVSNKMAPVIRHLYQQMPEPKWAI 120 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR-RVGNV 183 SMG+CA G ++ Y+++ ++++P+D++VPGCPP E LIY +++LQ+KI+ + G V Sbjct: 121 SMGACATSTGVFNN-YALI-PVNQVIPIDVFVPGCPPRPEQLIYALMMLQEKIKNQSGTV 178 Query: 184 K 184 K Sbjct: 179 K 179 >gi|323148910|ref|YP_004222465.1| NADH-plastoquinone oxidoreductase subunit K [Smilax china] gi|308742601|gb|ADO33452.1| NADH-plastoquinone oxidoreductase subunit K [Smilax china] Length = 284 Score = 210 bits (536), Expect = 5e-53, Method: Composition-based stats. Identities = 71/174 (40%), Positives = 109/174 (62%), Gaps = 2/174 (1%) Query: 5 TVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLAC 64 + NQ G+ +F + + T + T+++ L W+R SL + +G +C Sbjct: 44 SDNQNKREGKDYIETVTNLIEFPLL-DQTTPNSVISTTLNDLSNWSRLSSLWPLLYGTSC 102 Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E R+D +R+G PR+SPR++ +++ AGT+T KMA +L R+Y+QMPEP+YVI Sbjct: 103 CFIEFASLIGSRFDFDRYGLVPRSSPRKAALILPAGTVTMKMAPSLVRLYEQMPEPKYVI 162 Query: 125 SMGSCANGGGYYH-YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 +MG+C GG + SYS VRG D+++PVD+Y+PGCPP EA+I I L+KKI Sbjct: 163 AMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKKI 216 >gi|302536169|ref|ZP_07288511.1| NADH dehydrogenase subunit B [Streptomyces sp. C] gi|302445064|gb|EFL16880.1| NADH dehydrogenase subunit B [Streptomyces sp. C] Length = 184 Score = 210 bits (536), Expect = 5e-53, Method: Composition-based stats. Identities = 83/149 (55%), Positives = 105/149 (70%), Gaps = 2/149 (1%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89 E GFL+T+V+Q W R S+ TFGLACCA+EMM RYDL RFG R S Sbjct: 4 EEKLPSGFLLTTVEQAAGWVRKSSVFPATFGLACCAIEMMTTGAGRYDLARFGMEVFRGS 63 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQ+D+MIVAG ++ KMA LR+VYDQMP P++VISMG CA+ GG ++ Y++V+G D I Sbjct: 64 PRQADLMIVAGRVSQKMAPVLRQVYDQMPAPKWVISMGVCASSGGMFNN-YAIVQGVDHI 122 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIR 178 VPVDIY+PGCPP E L+ IL L +KI+ Sbjct: 123 VPVDIYLPGCPPRPEMLMDAILKLHQKIQ 151 >gi|297616443|ref|YP_003701602.1| NADH-quinone oxidoreductase subunit beta [Syntrophothermus lipocalidus DSM 12680] gi|297144280|gb|ADI01037.1| NADH-quinone oxidoreductase, B subunit [Syntrophothermus lipocalidus DSM 12680] Length = 160 Score = 210 bits (536), Expect = 5e-53, Method: Composition-based stats. Identities = 69/143 (48%), Positives = 102/143 (71%), Gaps = 1/143 (0%) Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQSDV 95 +VT+++++ W R+ S +T+G CC +EMM A R+D+ R+G+ RASPRQ+D+ Sbjct: 8 NIIVTTLEKIWNWGRSRSFWPLTYGCNCCPIEMMAAGAARFDIARYGYEVFRASPRQADL 67 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155 +IVAG +T KM + RV+ QMPEP++V++MG+CA GG + YSV+ GCD +PVD+Y Sbjct: 68 LIVAGPVTLKMKPVVERVWAQMPEPKWVLAMGNCATSGGPFKDGYSVLPGCDSFLPVDVY 127 Query: 156 VPGCPPTAEALIYGILLLQKKIR 178 VPGCPP EAL +G+L L+KK+ Sbjct: 128 VPGCPPRPEALFHGLLELKKKVE 150 >gi|271962156|ref|YP_003336352.1| NADH dehydrogenase (quinone) [Streptosporangium roseum DSM 43021] gi|270505331|gb|ACZ83609.1| NADH dehydrogenase (quinone) [Streptosporangium roseum DSM 43021] Length = 183 Score = 210 bits (536), Expect = 5e-53, Method: Composition-based stats. Identities = 78/152 (51%), Positives = 107/152 (70%), Gaps = 2/152 (1%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR-AS 89 E GF++++V+Q+ WAR S+ TFGLACCA+E+M P++DL RFG AS Sbjct: 4 EEKLPSGFMLSTVEQVAGWARKNSVWPATFGLACCAIELMSTGGPKHDLARFGMERASAS 63 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQ+D+MIVAG L+ KMA LR++YDQM EP++VI+MG CA+ GG ++ Y++V+G D + Sbjct: 64 PRQADLMIVAGRLSQKMAPVLRQIYDQMAEPKWVIAMGVCASSGGMFNN-YAIVQGVDHV 122 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181 VPVDIY+PGCPP E LI I+ L KI+ Sbjct: 123 VPVDIYLPGCPPRPEMLIDAIVKLHDKIQNTK 154 >gi|53804524|ref|YP_113819.1| NADH dehydrogenase subunit B [Methylococcus capsulatus str. Bath] gi|81682183|sp|Q608X8|NUOB_METCA RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|53758285|gb|AAU92576.1| NADH dehydrogenase I, B subunit [Methylococcus capsulatus str. Bath] Length = 213 Score = 210 bits (536), Expect = 5e-53, Method: Composition-based stats. Identities = 77/180 (42%), Positives = 109/180 (60%), Gaps = 13/180 (7%) Query: 2 GLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFG 61 LT +Q + E E + L +D LV W R S+ FG Sbjct: 4 SLTRADQTPAPKPGGQTYE-----------EALRRNILFARLDDLVRWGRKNSIWPFNFG 52 Query: 62 LACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 L+CC VEM A R+D+ RFG RASPRQ+D+M+++GT+ KMA ++ +YDQ+ EP Sbjct: 53 LSCCYVEMATAFTSRFDIARFGSEVIRASPRQADLMVISGTVFRKMAPVVKHLYDQLLEP 112 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 +++ISMGSCAN GG Y YSVV+G D+ +PVD+YVPGCPP EAL+ G+++LQ+ + + Sbjct: 113 KWIISMGSCANSGGMY-DIYSVVQGVDKFLPVDVYVPGCPPRPEALLEGLMMLQESVGKE 171 >gi|254391138|ref|ZP_05006345.1| NADH dehydrogenase beta subunit [Streptomyces clavuligerus ATCC 27064] gi|294814395|ref|ZP_06773038.1| NADH-quinone oxidoreductase subunit B [Streptomyces clavuligerus ATCC 27064] gi|326442785|ref|ZP_08217519.1| NADH dehydrogenase subunit B [Streptomyces clavuligerus ATCC 27064] gi|197704832|gb|EDY50644.1| NADH dehydrogenase beta subunit [Streptomyces clavuligerus ATCC 27064] gi|294326994|gb|EFG08637.1| NADH-quinone oxidoreductase subunit B [Streptomyces clavuligerus ATCC 27064] Length = 184 Score = 210 bits (536), Expect = 6e-53, Method: Composition-based stats. Identities = 83/149 (55%), Positives = 105/149 (70%), Gaps = 2/149 (1%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89 E GFL+T+V+Q W R S+ TFGLACCA+EMM RYDL RFG R S Sbjct: 4 EEKLPSGFLLTTVEQAAGWVRKASVFPATFGLACCAIEMMTTGAGRYDLARFGMEVFRGS 63 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQ+D+MIVAG ++ KMA LR+VYDQMP P++VISMG CA+ GG ++ Y++V+G D I Sbjct: 64 PRQADLMIVAGRVSQKMAPVLRQVYDQMPNPKWVISMGVCASSGGMFNN-YAIVQGVDHI 122 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIR 178 VPVDIY+PGCPP E L+ IL L +KI+ Sbjct: 123 VPVDIYLPGCPPRPEMLMDAILKLHQKIQ 151 >gi|255961387|ref|YP_003097580.1| NADH dehydrogenase 27 kDa subunit [Dendrocalamus latiflorus] gi|255040264|gb|ACT99924.1| NADH dehydrogenase 27 kDa subunit [Dendrocalamus latiflorus] Length = 246 Score = 210 bits (536), Expect = 6e-53, Method: Composition-based stats. Identities = 65/154 (42%), Positives = 103/154 (66%), Gaps = 1/154 (0%) Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87 + + + + T+ + L W++ SL + +G +CC +E R+D +R+G+ P+ Sbjct: 28 PLLDQTSSNSVISTTPNDLSNWSKLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGWVPK 87 Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146 +SPRQ+++++ AGT T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG Sbjct: 88 SSPRQANLILTAGTETMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 147 Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 D+++PVD+Y+PGCPP EA+I + L+KKI R Sbjct: 148 DKLIPVDVYLPGCPPKPEAVIDALTKLRKKISRE 181 >gi|16082574|ref|NP_394429.1| NADH dehydrogenase subunit B [Thermoplasma acidophilum DSM 1728] Length = 157 Score = 210 bits (536), Expect = 6e-53, Method: Composition-based stats. Identities = 85/148 (57%), Positives = 107/148 (72%), Gaps = 1/148 (0%) Query: 32 EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APRASP 90 + G + T++DQ + WAR+ SL +TFGLACCA+EMM D+ RFG R SP Sbjct: 5 KTGEVGVVTTTLDQALEWARSNSLWPLTFGLACCAIEMMAIQASDMDISRFGSEIFRNSP 64 Query: 91 RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150 RQSD+MIV+GT+T KMA +RR+YD+MP P+YVI+ G C GG Y+ YSVV G DR+V Sbjct: 65 RQSDLMIVSGTVTKKMAPRVRRIYDEMPYPKYVIAQGVCVIQGGPYNQGYSVVLGVDRVV 124 Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIR 178 PVD+Y+PGCPPT EAL GI+LLQKKIR Sbjct: 125 PVDVYIPGCPPTPEALTNGIILLQKKIR 152 >gi|239943477|ref|ZP_04695414.1| NADH dehydrogenase subunit B [Streptomyces roseosporus NRRL 15998] gi|239989931|ref|ZP_04710595.1| NADH dehydrogenase subunit B [Streptomyces roseosporus NRRL 11379] gi|291446948|ref|ZP_06586338.1| NADH dehydrogenase subunit B [Streptomyces roseosporus NRRL 15998] gi|291349895|gb|EFE76799.1| NADH dehydrogenase subunit B [Streptomyces roseosporus NRRL 15998] Length = 184 Score = 210 bits (536), Expect = 6e-53, Method: Composition-based stats. Identities = 82/149 (55%), Positives = 105/149 (70%), Gaps = 2/149 (1%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89 E GF++T+V+Q W R S+ TFGLACCA+EMM RYDL RFG R S Sbjct: 4 EEKLPSGFVLTTVEQAAGWVRKASVFPATFGLACCAIEMMTTGAGRYDLARFGMEVFRGS 63 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQ+D+MIVAG ++ KMA LR+VYDQMP P++VISMG CA+ GG ++ Y++V+G D I Sbjct: 64 PRQADLMIVAGRVSQKMAPVLRQVYDQMPNPKWVISMGVCASSGGMFNN-YAIVQGVDHI 122 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIR 178 VPVDIY+PGCPP E L+ IL L +KI+ Sbjct: 123 VPVDIYLPGCPPRPEMLLDAILKLHQKIQ 151 >gi|38505806|ref|NP_942425.1| NADH dehydrogenase subunit B [Synechocystis sp. PCC 6803] gi|131407|sp|P17062|NDHK2_SYNY3 RecName: Full=NAD(P)H-quinone oxidoreductase subunit K 2; AltName: Full=NAD(P)H dehydrogenase I subunit K 2; AltName: Full=NDH-1 subunit K 2; Short=NDH-K 2 gi|48068|emb|CAA35236.1| unnamed protein product [Synechocystis sp. PCC 6803] gi|38423830|dbj|BAD02039.1| NADH dehydrogenase subunit [Synechocystis sp. PCC 6803] Length = 219 Score = 210 bits (535), Expect = 6e-53, Method: Composition-based stats. Identities = 75/158 (47%), Positives = 110/158 (69%), Gaps = 2/158 (1%) Query: 21 KVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLE 80 + +++ E++ ++T +D + WAR +L M FG ACC +E M A PR+DLE Sbjct: 11 QNPIQAPQVTKELSE-NVILTCLDDIYNWARLSTLYPMMFGTACCFMEFMAAFGPRFDLE 69 Query: 81 RFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YS 139 RFG PRA+PRQ+D+MI AGT+T K A AL ++Y+Q+PEP+YVI+MG+C G + S Sbjct: 70 RFGSIPRATPRQADLMITAGTITMKYAPALVQLYEQIPEPKYVIAMGACTITAGMFSADS 129 Query: 140 YSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 + VRG D+++PVD+Y+PGCPP EA+I GI+ L+KK+ Sbjct: 130 PTAVRGVDKLIPVDVYIPGCPPRPEAVIDGIIKLRKKV 167 >gi|222479140|ref|YP_002565377.1| NADH-quinone oxidoreductase, B subunit [Halorubrum lacusprofundi ATCC 49239] gi|222452042|gb|ACM56307.1| NADH-quinone oxidoreductase, B subunit [Halorubrum lacusprofundi ATCC 49239] Length = 232 Score = 210 bits (535), Expect = 6e-53, Method: Composition-based stats. Identities = 76/176 (43%), Positives = 117/176 (66%), Gaps = 1/176 (0%) Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62 +T +Q + + S + D SR+ F++T D+ + W R S+ + FG+ Sbjct: 8 ITDESQVVTETRDSRMTGQGDRFNSRLREAFGSSPFILTKFDKFLNWCRGSSMFMLQFGI 67 Query: 63 ACCAVEMMQASMPRYDLERFGF-APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPR 121 ACC++EMM ++DL+RFG PRASPRQ+DVMIV GT+ +K A ++RVYDQMPEP+ Sbjct: 68 ACCSIEMMHTYAVKHDLDRFGSGVPRASPRQADVMIVPGTIVSKFAPRMKRVYDQMPEPK 127 Query: 122 YVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 +V+ MGSC GG + Y+V++G + ++P+DI+VPGCPP EAL+YG++ LQ+++ Sbjct: 128 FVVGMGSCTISGGPFQEGYNVIKGAEEVIPIDIHVPGCPPRPEALVYGVVKLQERV 183 >gi|297159509|gb|ADI09221.1| NADH dehydrogenase subunit B [Streptomyces bingchenggensis BCW-1] Length = 184 Score = 210 bits (535), Expect = 7e-53, Method: Composition-based stats. Identities = 83/152 (54%), Positives = 105/152 (69%), Gaps = 2/152 (1%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89 + GFL+T+V+Q AR S+ TFGLACCA+EMM RYDL RFG R S Sbjct: 4 EDKLPSGFLLTTVEQAAGLARKSSVFPATFGLACCAIEMMTTGAGRYDLARFGMEVFRGS 63 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQ+D+MIVAG ++ KMA LR+VYDQMP P++VISMG CA+ GG ++ Y++V+G D I Sbjct: 64 PRQADLMIVAGRVSQKMAPVLRQVYDQMPNPKWVISMGVCASSGGMFNN-YAIVQGVDHI 122 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181 VPVDIY+PGCPP E L+ IL L +KIR Sbjct: 123 VPVDIYLPGCPPRPEMLLDAILKLHQKIREEK 154 >gi|297201624|ref|ZP_06919021.1| NADH dehydrogenase subunit B [Streptomyces sviceus ATCC 29083] gi|197711005|gb|EDY55039.1| NADH dehydrogenase subunit B [Streptomyces sviceus ATCC 29083] Length = 184 Score = 210 bits (535), Expect = 7e-53, Method: Composition-based stats. Identities = 83/149 (55%), Positives = 105/149 (70%), Gaps = 2/149 (1%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89 E GFL+T+V+Q W R S+ TFGLACCA+EMM RYDL RFG R S Sbjct: 4 EEKLPSGFLLTTVEQAAGWVRKASVFPATFGLACCAIEMMTTGAGRYDLARFGMEVFRGS 63 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQ+D+MIVAG ++ KMA LR+VYDQMP P++VISMG CA+ GG ++ Y++V+G D I Sbjct: 64 PRQADLMIVAGRVSQKMAPVLRQVYDQMPNPKWVISMGVCASSGGMFNN-YAIVQGVDHI 122 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIR 178 VPVDIY+PGCPP E L+ IL L +KI+ Sbjct: 123 VPVDIYLPGCPPRPEMLMDAILKLHQKIQ 151 >gi|282860720|ref|ZP_06269786.1| NADH-quinone oxidoreductase, B subunit [Streptomyces sp. ACTE] gi|282564456|gb|EFB69992.1| NADH-quinone oxidoreductase, B subunit [Streptomyces sp. ACTE] Length = 184 Score = 210 bits (535), Expect = 7e-53, Method: Composition-based stats. Identities = 82/149 (55%), Positives = 105/149 (70%), Gaps = 2/149 (1%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89 E GF++T+V+Q W R S+ TFGLACCA+EMM RYDL RFG R S Sbjct: 4 EEKLPSGFVLTTVEQAAGWVRKSSVFPATFGLACCAIEMMTTGAGRYDLARFGMEVFRGS 63 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQ+D+MIVAG ++ KMA LR+VYDQMP P++VISMG CA+ GG ++ Y++V+G D I Sbjct: 64 PRQADLMIVAGRVSQKMAPVLRQVYDQMPSPKWVISMGVCASSGGMFNN-YAIVQGVDHI 122 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIR 178 VPVDIY+PGCPP E L+ IL L +KI+ Sbjct: 123 VPVDIYLPGCPPRPEMLMDAILKLHQKIQ 151 >gi|326329611|ref|ZP_08195933.1| NADH dehydrogenase I, B subunit [Nocardioidaceae bacterium Broad-1] gi|325952607|gb|EGD44625.1| NADH dehydrogenase I, B subunit [Nocardioidaceae bacterium Broad-1] Length = 184 Score = 210 bits (535), Expect = 7e-53, Method: Composition-based stats. Identities = 80/150 (53%), Positives = 107/150 (71%), Gaps = 2/150 (1%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89 E G L+T+V+ L + R SL TFGLACCA+EMM + P+YDL R+G RAS Sbjct: 4 EEKLPSGVLLTTVEGLAGYFRKASLWPATFGLACCAIEMMTSGGPKYDLARYGMEVFRAS 63 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQ+D+MIVAG ++ KMA LR++YDQMPEP++V++MG CA+ GG ++ Y++V+G D I Sbjct: 64 PRQADLMIVAGRVSQKMAPVLRQIYDQMPEPKWVLAMGVCASSGGMFNN-YAIVQGVDHI 122 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRR 179 VPVD+Y+PGCPP E LI IL L KI+ Sbjct: 123 VPVDMYLPGCPPRPEMLIDAILKLHDKIQH 152 >gi|307328622|ref|ZP_07607795.1| NADH-quinone oxidoreductase, B subunit [Streptomyces violaceusniger Tu 4113] gi|306885734|gb|EFN16747.1| NADH-quinone oxidoreductase, B subunit [Streptomyces violaceusniger Tu 4113] Length = 184 Score = 210 bits (535), Expect = 7e-53, Method: Composition-based stats. Identities = 84/152 (55%), Positives = 105/152 (69%), Gaps = 2/152 (1%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89 E GFL+T+V+Q AR S+ TFGLACCA+EMM RYDL RFG R S Sbjct: 4 EEKLPSGFLLTTVEQAAGLARKSSVFPATFGLACCAIEMMTTGAGRYDLARFGMEVFRGS 63 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQ+D+MIVAG ++ KMA LR+VYDQMP P++VISMG CA+ GG ++ Y++V+G D I Sbjct: 64 PRQADLMIVAGRVSQKMAPVLRQVYDQMPNPKWVISMGVCASSGGMFNN-YAIVQGVDHI 122 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181 VPVDIY+PGCPP E L+ IL L +KIR Sbjct: 123 VPVDIYLPGCPPRPEMLLDSILKLHQKIREEK 154 >gi|148657777|ref|YP_001277982.1| NADH dehydrogenase subunit B [Roseiflexus sp. RS-1] gi|238065039|sp|A5UZH9|NUOB2_ROSS1 RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName: Full=NADH dehydrogenase I subunit B 2; AltName: Full=NDH-1 subunit B 2 gi|148569887|gb|ABQ92032.1| NADH-quinone oxidoreductase, B subunit [Roseiflexus sp. RS-1] Length = 167 Score = 210 bits (535), Expect = 7e-53, Method: Composition-based stats. Identities = 79/154 (51%), Positives = 110/154 (71%), Gaps = 2/154 (1%) Query: 29 ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APR 87 I + G + S++QLV W+R+ ++ + FGLACCA+EMM A YDL RFG R Sbjct: 3 IEQKAGDMGIVTASLEQLVNWSRSSAMWPLLFGLACCAIEMMGAQGANYDLSRFGMEINR 62 Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCD 147 ASPRQ+D+MIVAG ++ KMA +RR+YDQM +P++VI+MG CA GG ++ Y++V+G D Sbjct: 63 ASPRQADLMIVAGRVSRKMAPVVRRLYDQMADPKWVIAMGDCAACGGVFNN-YAIVQGVD 121 Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181 IVPVD+YV GCPP EALI GI+ L +K++R+ Sbjct: 122 EIVPVDVYVAGCPPRPEALIDGIIHLHEKVKRMR 155 >gi|320160240|ref|YP_004173464.1| NADH-quinone oxidoreductase subunit B [Anaerolinea thermophila UNI-1] gi|319994093|dbj|BAJ62864.1| NADH-quinone oxidoreductase chain B [Anaerolinea thermophila UNI-1] Length = 160 Score = 210 bits (535), Expect = 8e-53, Method: Composition-based stats. Identities = 79/157 (50%), Positives = 111/157 (70%), Gaps = 2/157 (1%) Query: 29 ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-R 87 + ++ + G + +++ V WART ++ M FGLACCA+EMM A YD+ RFG R Sbjct: 3 VEQKLGNMGVVTLKLEEAVNWARTNAMWPMLFGLACCAIEMMAAQASNYDMSRFGMELMR 62 Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCD 147 ASPRQSD+MIVAG ++ KMA LR++YDQMP P++VI+MG CA+ GG ++ Y++++G D Sbjct: 63 ASPRQSDLMIVAGRVSRKMAPVLRQLYDQMPYPKWVIAMGDCASCGGVFNN-YAILQGVD 121 Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 IVPVD+YV GCPP E LI+G+L L K+R+ VK Sbjct: 122 EIVPVDVYVAGCPPRPEGLIHGVLTLHDKVRKEKLVK 158 >gi|110667597|ref|YP_657408.1| NADH dehydrogenase, subunit B (ubiquinone) [Haloquadratum walsbyi DSM 16790] gi|109625344|emb|CAJ51766.1| NADH dehydrogenase, subunit B (ubiquinone) [Haloquadratum walsbyi DSM 16790] Length = 234 Score = 210 bits (535), Expect = 8e-53, Method: Composition-based stats. Identities = 76/178 (42%), Positives = 115/178 (64%), Gaps = 2/178 (1%) Query: 2 GLTTVNQKIISGQSSCSLEKVDADF-SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTF 60 T + ++ + + D F S++ F++T DQ + W R S+ + F Sbjct: 8 AFVTDDTQVQTDTRDARISGTDERFNSKLREAFGSSPFILTKFDQFMNWVRGSSMFMLQF 67 Query: 61 GLACCAVEMMQASMPRYDLERFGF-APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119 G+ACC++EMM ++DL+RFG PRASPRQ+DV+IV GT+ +K A ++RVYDQMPE Sbjct: 68 GIACCSIEMMHTYAVKHDLDRFGAGVPRASPRQADVIIVPGTIVSKFAPRMKRVYDQMPE 127 Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 P++V+ MGSC GG + Y+V++G + ++PVDI++PGCPP EAL+YGI LQ++I Sbjct: 128 PKFVVGMGSCTVSGGPFQEGYNVIKGAEEVIPVDIHIPGCPPRPEALVYGIAKLQERI 185 >gi|77917822|ref|YP_355637.1| trifunctional NADH dehydrogenase I subunit B/C/D [Pelobacter carbinolicus DSM 2380] gi|123575097|sp|Q3A825|NUBCD_PELCD RecName: Full=NADH-quinone oxidoreductase subunit B/C/D; AltName: Full=NADH dehydrogenase I subunit B/C/D; AltName: Full=NDH-1 subunit B/C/D gi|77543905|gb|ABA87467.1| NADH dehydrogenase subunit B / NADH dehydrogenase subunit D / NADH dehydrogenase subunit C [Pelobacter carbinolicus DSM 2380] Length = 794 Score = 210 bits (534), Expect = 8e-53, Method: Composition-based stats. Identities = 73/153 (47%), Positives = 109/153 (71%), Gaps = 2/153 (1%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RAS 89 SE K ++T++D + W R S+ M FGL+CC VEMM + PR+DL RFG R + Sbjct: 2 SESIPKNIILTTLDDAINWGRKNSMWPMFFGLSCCFVEMMGSMTPRFDLARFGAEVLRGT 61 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PR++D+M++AGT KMA+++ RVY++M P++VI+MGSCAN GG Y YSV++G +++ Sbjct: 62 PREADLMVIAGTPFKKMAASMLRVYEEMANPKWVIAMGSCANSGGMY-DVYSVMQGVNQV 120 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182 +PVD+Y+PGCPP EA + G++ LQ+KI R + Sbjct: 121 LPVDVYIPGCPPRPEAFMQGLMTLQEKIARKES 153 >gi|290958259|ref|YP_003489441.1| NADH dehydrogenase subunit NuoB [Streptomyces scabiei 87.22] gi|260647785|emb|CBG70890.1| NuoB, NADH dehydrogenase subunit [Streptomyces scabiei 87.22] Length = 184 Score = 210 bits (534), Expect = 8e-53, Method: Composition-based stats. Identities = 83/149 (55%), Positives = 105/149 (70%), Gaps = 2/149 (1%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89 E GFL+T+V+Q W R S+ TFGLACCA+EMM RYDL RFG R S Sbjct: 4 EEKLPSGFLLTTVEQAAGWVRKASVFPATFGLACCAIEMMTTGAGRYDLARFGMEVFRGS 63 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQ+D+MIVAG ++ KMA LR+VYDQMP P++VISMG CA+ GG ++ Y++V+G D I Sbjct: 64 PRQADLMIVAGRVSQKMAPVLRQVYDQMPNPKWVISMGVCASSGGMFNN-YAIVQGVDHI 122 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIR 178 VPVDIY+PGCPP E L+ IL L +KI+ Sbjct: 123 VPVDIYLPGCPPRPEMLMDAILKLHQKIQ 151 >gi|156741308|ref|YP_001431437.1| NADH dehydrogenase subunit B [Roseiflexus castenholzii DSM 13941] gi|238065017|sp|A7NIW1|NUOB1_ROSCS RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName: Full=NADH dehydrogenase I subunit B 1; AltName: Full=NDH-1 subunit B 1 gi|156232636|gb|ABU57419.1| NADH-quinone oxidoreductase, B subunit [Roseiflexus castenholzii DSM 13941] Length = 167 Score = 210 bits (534), Expect = 8e-53, Method: Composition-based stats. Identities = 79/154 (51%), Positives = 110/154 (71%), Gaps = 2/154 (1%) Query: 29 ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APR 87 I + G + S++Q+V W+R+ ++ + FGLACCA+EMM A YDL RFG R Sbjct: 3 IEQKAGDMGIVTASLEQVVNWSRSNAMWPLLFGLACCAIEMMGAQGANYDLSRFGMEINR 62 Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCD 147 ASPRQ+D+MIVAG ++ KMA +RR+YDQM +P++VI+MG CA GG ++ Y++V+G D Sbjct: 63 ASPRQADLMIVAGRVSRKMAPVVRRLYDQMADPKWVIAMGDCAACGGVFNN-YAIVQGVD 121 Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181 IVPVD+YV GCPP EALI GI+ L +K+RR+ Sbjct: 122 EIVPVDVYVAGCPPRPEALIDGIIHLHEKVRRMR 155 >gi|297563968|ref|YP_003682941.1| NADH-quinone oxidoreductase, B subunit [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296848417|gb|ADH70435.1| NADH-quinone oxidoreductase, B subunit [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 181 Score = 210 bits (534), Expect = 8e-53, Method: Composition-based stats. Identities = 76/152 (50%), Positives = 106/152 (69%), Gaps = 2/152 (1%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89 E G ++T+V+Q+V AR S+ TFGLACCA+EMM P YDL RFG A+ Sbjct: 4 EEKLPSGIMLTTVEQVVGLARKSSMWPATFGLACCAIEMMSVGGPHYDLARFGMEKFGAT 63 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQ+D+MIVAG ++ KMA LR++YDQMPEP++VI+MG CA+ GG ++ Y++V+G D + Sbjct: 64 PRQADLMIVAGRVSQKMAPVLRQIYDQMPEPKWVIAMGVCASSGGMFNN-YAIVQGVDHV 122 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181 VPVD+Y+PGCPP E L+ +L L K++ Sbjct: 123 VPVDMYLPGCPPRPEMLLDAVLKLHDKVQNTK 154 >gi|326777317|ref|ZP_08236582.1| NAD(P)H-quinone oxidoreductase subunit K [Streptomyces cf. griseus XylebKG-1] gi|326657650|gb|EGE42496.1| NAD(P)H-quinone oxidoreductase subunit K [Streptomyces cf. griseus XylebKG-1] Length = 230 Score = 210 bits (534), Expect = 8e-53, Method: Composition-based stats. Identities = 86/182 (47%), Positives = 113/182 (62%), Gaps = 4/182 (2%) Query: 1 MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVT-SVDQLVTWARTGSLMWMT 59 MGLT+ +S D + L + ++ W R SL Sbjct: 1 MGLTSRPTPASRQPASPP--PADPVLLPEPKRLGVLSRLAPEPMKVVLNWGRRYSLWVFN 58 Query: 60 FGLACCAVEMMQASMPRYDLERFGFAPR-ASPRQSDVMIVAGTLTNKMASALRRVYDQMP 118 FGLACCA+E + ASM R+D R G P PRQ+D+MIV+GT+T+KMA A++R+Y+QMP Sbjct: 59 FGLACCAIEFIAASMARHDFIRLGVIPFAPGPRQADLMIVSGTVTDKMAPAVKRLYEQMP 118 Query: 119 EPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 EP+YVIS G+C+N GG Y SYSV +G D+I+PVD+YVPGCPP EAL+ GIL LQ+KI Sbjct: 119 EPKYVISFGACSNCGGPYWDSYSVTKGVDQIIPVDVYVPGCPPRPEALLQGILKLQEKIA 178 Query: 179 RV 180 R Sbjct: 179 RE 180 >gi|298244920|ref|ZP_06968726.1| NADH-quinone oxidoreductase, B subunit [Ktedonobacter racemifer DSM 44963] gi|297552401|gb|EFH86266.1| NADH-quinone oxidoreductase, B subunit [Ktedonobacter racemifer DSM 44963] Length = 201 Score = 210 bits (534), Expect = 8e-53, Method: Composition-based stats. Identities = 83/179 (46%), Positives = 118/179 (65%), Gaps = 9/179 (5%) Query: 9 KIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLV----TWARTGSLMWMTFGLAC 64 + S+ +++ E+ +TS+ ++ WAR+ S+ + +GLAC Sbjct: 15 GLRRKPIPLSMASGPHEYTPGDQELP---VQLTSLADMLQWAQNWARSKSVWPLGYGLAC 71 Query: 65 CAVEMMQ-ASMPRYDLERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122 CA+EM+ AS P+YDL RFG R+SPRQ+D+MIVAGT++ KM LR +Y+QMPEP++ Sbjct: 72 CAIEMIASASAPQYDLSRFGSEVFRSSPRQADLMIVAGTVSIKMGPRLRLLYEQMPEPKW 131 Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181 VISMG CAN GG ++ SY V+G D IVPVD+Y+PGCPP EALI G+L L++KI + G Sbjct: 132 VISMGQCANSGGEFYDSYYTVQGVDTIVPVDVYIPGCPPRPEALIEGLLKLREKIAKQG 190 >gi|315638063|ref|ZP_07893248.1| NADH-quinone oxidoreductase subunit B [Campylobacter upsaliensis JV21] gi|315481911|gb|EFU72530.1| NADH-quinone oxidoreductase subunit B [Campylobacter upsaliensis JV21] Length = 167 Score = 210 bits (534), Expect = 1e-52, Method: Composition-based stats. Identities = 83/147 (56%), Positives = 110/147 (74%), Gaps = 1/147 (0%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 ++TSVD+LV W R+ SL +++GLACCA+EMM A RYD +RFG RASPR S+VMI Sbjct: 14 VILTSVDKLVQWGRSNSLWALSYGLACCAIEMMAAGGSRYDFDRFGTIFRASPRHSEVMI 73 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 +AGTL K A RR+YD MP+P++VISMGSCAN GG ++ +YS V+G DRI+PVDIYVP Sbjct: 74 IAGTLCKKHAEFTRRLYDMMPDPKWVISMGSCANTGGMFN-TYSTVQGVDRIIPVDIYVP 132 Query: 158 GCPPTAEALIYGILLLQKKIRRVGNVK 184 GC P E+ + +++LQKKIR+ + Sbjct: 133 GCAPRPESFQFALMILQKKIRKEKASR 159 >gi|41409300|ref|NP_962136.1| NADH dehydrogenase subunit B [Mycobacterium avium subsp. paratuberculosis K-10] gi|118465722|ref|YP_883186.1| NADH dehydrogenase subunit B [Mycobacterium avium 104] gi|254776456|ref|ZP_05217972.1| NADH dehydrogenase subunit B [Mycobacterium avium subsp. avium ATCC 25291] gi|296169191|ref|ZP_06850844.1| NADH-quinone oxidoreductase subunit B [Mycobacterium parascrofulaceum ATCC BAA-614] gi|81571071|sp|Q73V14|NUOB_MYCPA RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|238065174|sp|A0QJU8|NUOB_MYCA1 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|41398120|gb|AAS05750.1| NuoB [Mycobacterium avium subsp. paratuberculosis K-10] gi|118167009|gb|ABK67906.1| NADH-quinone oxidoreductase chain b [Mycobacterium avium 104] gi|295896089|gb|EFG75756.1| NADH-quinone oxidoreductase subunit B [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 184 Score = 210 bits (534), Expect = 1e-52, Method: Composition-based stats. Identities = 75/151 (49%), Positives = 110/151 (72%), Gaps = 2/151 (1%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89 E G L+++V+++ + R SL TFGLACCA+EMM + PR+D+ RFG A+ Sbjct: 4 EEQLPGGILLSTVEKVAGYVRKNSLWPATFGLACCAIEMMATAGPRFDIARFGMERFSAT 63 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQ+D+MIVAG ++ KMA LR++YDQM EP++V++MG CA+ GG ++ Y++V+G D + Sbjct: 64 PRQADLMIVAGRVSQKMAPVLRQIYDQMAEPKWVLAMGVCASSGGMFNN-YAIVQGVDHV 122 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 VPVDIY+PGCPP E L+Y IL L +KI+++ Sbjct: 123 VPVDIYLPGCPPRPEMLLYAILKLHEKIQQM 153 >gi|289582900|ref|YP_003481366.1| NADH-quinone oxidoreductase subunit beta [Natrialba magadii ATCC 43099] gi|289532453|gb|ADD06804.1| NADH-quinone oxidoreductase, B subunit [Natrialba magadii ATCC 43099] Length = 235 Score = 210 bits (534), Expect = 1e-52, Method: Composition-based stats. Identities = 78/172 (45%), Positives = 114/172 (66%), Gaps = 2/172 (1%) Query: 9 KIISGQSSCSLEKVDADF-SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAV 67 + + E VD F S++ F++T D+ + W R S+ + FG+ACC++ Sbjct: 16 PSTDTRDARIGEGVDDRFNSKLREAFGASPFILTKFDEFMNWVRGNSMFMLQFGIACCSI 75 Query: 68 EMMQASMPRYDLERFGF-APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISM 126 EMM ++DL+RFG PRASPRQ+DVMIV GT+ +K ++RVYDQMPEP++V+ M Sbjct: 76 EMMHTYAIKHDLDRFGAGVPRASPRQADVMIVPGTIVSKFGPRMKRVYDQMPEPKFVVGM 135 Query: 127 GSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 GSC GG + Y+VV+G + I+P+DI+VPGCPP EAL+YG+L LQ++I+ Sbjct: 136 GSCTISGGPFQEGYNVVKGAEEIIPIDIHVPGCPPRPEALLYGVLKLQERIK 187 >gi|301353373|ref|YP_003795584.1| NADH-plastoquinone oxidoreductase subunit K [Pteridium aquilinum subsp. aquilinum] gi|301016291|gb|ADK47578.1| NADH-plastoquinone oxidoreductase subunit K [Pteridium aquilinum subsp. aquilinum] Length = 252 Score = 210 bits (534), Expect = 1e-52, Method: Composition-based stats. Identities = 66/160 (41%), Positives = 101/160 (63%), Gaps = 1/160 (0%) Query: 22 VDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLER 81 +++ + + ++ W+R SL + +G +CC +E R+D +R Sbjct: 25 LNSVEPLLPEWGVSNSIFLANISDFSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDR 84 Query: 82 FGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSY 140 +G PR+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG SY Sbjct: 85 YGLVPRSSPRQADLIVTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMSSTDSY 144 Query: 141 SVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 S VRG D+++PVDI++PGCPP EA+I + L+KKI R Sbjct: 145 STVRGVDKLIPVDIHLPGCPPKPEAIIDAVTKLRKKIARE 184 >gi|10640284|emb|CAC12098.1| probable NADH dehydrogenase, chain B [Thermoplasma acidophilum] Length = 149 Score = 209 bits (533), Expect = 1e-52, Method: Composition-based stats. Identities = 85/143 (59%), Positives = 106/143 (74%), Gaps = 1/143 (0%) Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APRASPRQSDV 95 G + T++DQ + WAR+ SL +TFGLACCA+EMM D+ RFG R SPRQSD+ Sbjct: 2 GVVTTTLDQALEWARSNSLWPLTFGLACCAIEMMAIQASDMDISRFGSEIFRNSPRQSDL 61 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155 MIV+GT+T KMA +RR+YD+MP P+YVI+ G C GG Y+ YSVV G DR+VPVD+Y Sbjct: 62 MIVSGTVTKKMAPRVRRIYDEMPYPKYVIAQGVCVIQGGPYNQGYSVVLGVDRVVPVDVY 121 Query: 156 VPGCPPTAEALIYGILLLQKKIR 178 +PGCPPT EAL GI+LLQKKIR Sbjct: 122 IPGCPPTPEALTNGIILLQKKIR 144 >gi|254382442|ref|ZP_04997801.1| NuoB [Streptomyces sp. Mg1] gi|194341346|gb|EDX22312.1| NuoB [Streptomyces sp. Mg1] Length = 184 Score = 209 bits (533), Expect = 1e-52, Method: Composition-based stats. Identities = 83/149 (55%), Positives = 104/149 (69%), Gaps = 2/149 (1%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89 E GFL+T+V+Q W R S+ TFGLACCA+EMM RYDL RFG R S Sbjct: 4 EEKLPSGFLLTTVEQAAGWVRKSSVFPATFGLACCAIEMMTTGAGRYDLARFGMEVFRGS 63 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQ+D+MIVAG ++ KMA LR+VYDQMP P++VISMG CA+ GG ++ Y++V+G D I Sbjct: 64 PRQADLMIVAGRVSQKMAPVLRQVYDQMPAPKWVISMGVCASSGGMFNN-YAIVQGVDHI 122 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIR 178 VPVDIY+PGCPP E L+ IL L KI+ Sbjct: 123 VPVDIYLPGCPPRPEMLMDAILKLHHKIQ 151 >gi|86739252|ref|YP_479652.1| NADH dehydrogenase subunit B [Frankia sp. CcI3] gi|123765293|sp|Q2JFL9|NUOB_FRASC RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|86566114|gb|ABD09923.1| NADH dehydrogenase subunit B [Frankia sp. CcI3] Length = 271 Score = 209 bits (533), Expect = 1e-52, Method: Composition-based stats. Identities = 81/148 (54%), Positives = 106/148 (71%), Gaps = 2/148 (1%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89 E G L+ SV++L W+R SL TFGLACCA+EMM RYDL RFG RAS Sbjct: 4 EEKLPGGVLLASVEKLANWSRRSSLWPATFGLACCAIEMMSTGAGRYDLSRFGMEVFRAS 63 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQ+D+MIVAG ++ KMA LR++YDQMPEP++V+SMG CA+ GG ++ Y++V+G D I Sbjct: 64 PRQADLMIVAGRVSQKMAPVLRQIYDQMPEPKWVLSMGVCASSGGMFNN-YAIVQGVDHI 122 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKI 177 VPVD+Y+PGCPP E L+ I+ L +KI Sbjct: 123 VPVDMYLPGCPPRPEMLMDAIIKLHEKI 150 >gi|83589827|ref|YP_429836.1| NADH dehydrogenase subunit B [Moorella thermoacetica ATCC 39073] gi|123524686|sp|Q2RJU6|NUOB_MOOTA RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|83572741|gb|ABC19293.1| NADH dehydrogenase subunit B [Moorella thermoacetica ATCC 39073] Length = 166 Score = 209 bits (533), Expect = 1e-52, Method: Composition-based stats. Identities = 80/151 (52%), Positives = 108/151 (71%), Gaps = 1/151 (0%) Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-P 86 + + ++++VD ++ + R S +TFGLACCA+EMM A RYD+ RFG+ Sbjct: 7 KPADPQIPDNIILSTVDAMLNYCRAHSFWPVTFGLACCAIEMMAAGGARYDIARFGYEVF 66 Query: 87 RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGC 146 R SPRQ+D+MIVAGT+T KMA +RR+Y+QMP P++VI+MGSCA GG + SY+VV G Sbjct: 67 RPSPRQADLMIVAGTVTRKMAPLVRRLYEQMPAPKWVIAMGSCAISGGPFVDSYNVVPGV 126 Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 D IVPVD+YVPGC P EALI G+L L+KK+ Sbjct: 127 DTIVPVDVYVPGCAPRPEALINGLLALKKKV 157 >gi|239980151|ref|ZP_04702675.1| NADH dehydrogenase subunit B [Streptomyces albus J1074] gi|291452006|ref|ZP_06591396.1| NuoB [Streptomyces albus J1074] gi|291354955|gb|EFE81857.1| NuoB [Streptomyces albus J1074] Length = 184 Score = 209 bits (533), Expect = 1e-52, Method: Composition-based stats. Identities = 81/149 (54%), Positives = 105/149 (70%), Gaps = 2/149 (1%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89 E GFL+T+V+Q W R S+ TFGLACCA+EMM RYDL RFG R S Sbjct: 4 EEKLPSGFLLTTVEQAAGWVRKSSMFPATFGLACCAIEMMTTGAGRYDLARFGMEVFRGS 63 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQ+D+MIVAG ++ KMA LR+VYDQMP P++VISMG CA+ GG ++ Y++V+G D I Sbjct: 64 PRQADLMIVAGRVSQKMAPVLRQVYDQMPNPKWVISMGVCASSGGMFNN-YAIVQGVDHI 122 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIR 178 VPVDIY+PGCPP E L+ I+ L +K++ Sbjct: 123 VPVDIYLPGCPPRPEMLVDAIVKLHQKVQ 151 >gi|72004758|ref|XP_780430.1| PREDICTED: similar to NADH-plastoquinone oxidoreductase [Strongylocentrotus purpuratus] gi|115948827|ref|XP_001196650.1| PREDICTED: similar to NADH-plastoquinone oxidoreductase [Strongylocentrotus purpuratus] Length = 132 Score = 209 bits (533), Expect = 1e-52, Method: Composition-based stats. Identities = 105/126 (83%), Positives = 115/126 (91%) Query: 58 MTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQM 117 MT GLACCAVEMM + PRYD++RFG RASPRQSDVMIVAGTLTNKMA ALR+VYDQM Sbjct: 1 MTLGLACCAVEMMHFAAPRYDMDRFGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQM 60 Query: 118 PEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 PEPR+VISMGSCANGGGYYHYSY+VVRGCDRIVPVDIYVPGCPPTAEAL+YG+L LQKKI Sbjct: 61 PEPRWVISMGSCANGGGYYHYSYAVVRGCDRIVPVDIYVPGCPPTAEALLYGVLQLQKKI 120 Query: 178 RRVGNV 183 +R N+ Sbjct: 121 KRAQNI 126 >gi|15616775|ref|NP_239987.1| NADH dehydrogenase subunit B [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|219681530|ref|YP_002467915.1| NADH dehydrogenase beta subunit [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|219682086|ref|YP_002468470.1| NADH dehydrogenase beta subunit [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|257471211|ref|ZP_05635210.1| NADH dehydrogenase subunit B [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)] gi|11133957|sp|P57253|NUOB_BUCAI RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|238055274|sp|B8D8V6|NUOB_BUCA5 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|238055275|sp|B8D760|NUOB_BUCAT RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|25299001|pir||A84948 NADH2 dehydrogenase (ubiquinone) (EC 1.6.5.3) chain B [imported] - Buchnera sp. (strain APS) gi|10038838|dbj|BAB12873.1| NADH dehydrogenase I chain B [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|219621819|gb|ACL29975.1| NADH dehydrogenase beta subunit [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|219624373|gb|ACL30528.1| NADH dehydrogenase beta subunit [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|311085897|gb|ADP65979.1| NADH dehydrogenase subunit B [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)] gi|311086470|gb|ADP66551.1| NADH dehydrogenase subunit B [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)] gi|311087051|gb|ADP67131.1| NADH dehydrogenase subunit B [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)] gi|311087610|gb|ADP67689.1| NADH dehydrogenase subunit B [Buchnera aphidicola str. JF98 (Acyrthosiphon pisum)] Length = 224 Score = 209 bits (533), Expect = 1e-52, Method: Composition-based stats. Identities = 78/171 (45%), Positives = 104/171 (60%), Gaps = 2/171 (1%) Query: 12 SGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQ 71 ++E V + G + + +LV W R SL FGL+CC VEM+ Sbjct: 15 KKYPKQTIESVSDPLEEYLKKNIFMGKITQLLHKLVNWGRKNSLWPYNFGLSCCYVEMVS 74 Query: 72 ASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCA 130 A +D+ RFG RASPRQ+DVM++AGT KMA ++R+YDQM EP++VISMG+CA Sbjct: 75 AFTSVHDVARFGSEVLRASPRQADVMVIAGTPFIKMAPVIQRLYDQMLEPKWVISMGACA 134 Query: 131 NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181 N GG Y YSVV+G D+ +PVDIY+PGCPP EA + ++LLQK I Sbjct: 135 NSGGMY-DIYSVVQGVDKFLPVDIYIPGCPPRPEAYMQALILLQKLINEER 184 >gi|332669450|ref|YP_004452458.1| NADH-quinone oxidoreductase subunit B [Cellulomonas fimi ATCC 484] gi|332338488|gb|AEE45071.1| NADH-quinone oxidoreductase, B subunit [Cellulomonas fimi ATCC 484] Length = 183 Score = 209 bits (532), Expect = 1e-52, Method: Composition-based stats. Identities = 84/150 (56%), Positives = 109/150 (72%), Gaps = 2/150 (1%) Query: 32 EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASP 90 E GFL+T+V+ LV + R GSL +TFGLACCA+EMM A PRYDL RFG RASP Sbjct: 4 EEAPSGFLLTTVEDLVGYFRKGSLWPVTFGLACCAIEMMAAGAPRYDLSRFGMEVFRASP 63 Query: 91 RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150 RQ+D+MIVAG ++ KMA +R+VYDQM P++V+SMG CA+ GG ++ Y++V+G D +V Sbjct: 64 RQADLMIVAGRVSQKMAPVVRQVYDQMSAPKWVLSMGVCASSGGMFNN-YAIVQGVDHVV 122 Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 PVDIY+PGCPP E LI IL L +I+ Sbjct: 123 PVDIYLPGCPPRPEMLINAILTLHDQIQNE 152 >gi|57505815|ref|ZP_00371740.1| NADH2 dehydrogenase (ubiquinone) I chain B Cj1578c [Campylobacter upsaliensis RM3195] gi|57015845|gb|EAL52634.1| NADH2 dehydrogenase (ubiquinone) I chain B Cj1578c [Campylobacter upsaliensis RM3195] Length = 167 Score = 209 bits (532), Expect = 1e-52, Method: Composition-based stats. Identities = 83/147 (56%), Positives = 110/147 (74%), Gaps = 1/147 (0%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 ++TSVD+LV W R+ SL +++GLACCA+EMM A RYD +RFG RASPR S+VMI Sbjct: 14 VVLTSVDKLVQWGRSNSLWALSYGLACCAIEMMAAGGSRYDFDRFGTIFRASPRHSEVMI 73 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 +AGTL K A RR+YD MP+P++VISMGSCAN GG ++ +YS V+G DRI+PVDIYVP Sbjct: 74 IAGTLCKKHAEFTRRLYDMMPDPKWVISMGSCANTGGMFN-TYSTVQGVDRIIPVDIYVP 132 Query: 158 GCPPTAEALIYGILLLQKKIRRVGNVK 184 GC P E+ + +++LQKKIR+ + Sbjct: 133 GCAPRPESFQFALMILQKKIRKEKASR 159 >gi|300123970|emb|CBK25241.2| unnamed protein product [Blastocystis hominis] Length = 274 Score = 209 bits (532), Expect = 1e-52, Method: Composition-based stats. Identities = 92/143 (64%), Positives = 117/143 (81%) Query: 40 VTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVA 99 VT+VD+++ + R GS+ TFGLACCA+EM+ AS R+D ER G PRA+PRQ+D+MIV+ Sbjct: 125 VTTVDKVIGYCRAGSVFPQTFGLACCAMEMIDASSARFDFERLGMIPRATPRQADLMIVS 184 Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGC 159 GT+TNKMA A+RR+YDQM EPRYVISMGSCAN GGYY YSY+VVRG DR+ PVD YVPGC Sbjct: 185 GTVTNKMAPAIRRLYDQMSEPRYVISMGSCANSGGYYAYSYNVVRGVDRLFPVDYYVPGC 244 Query: 160 PPTAEALIYGILLLQKKIRRVGN 182 PPTA+ L+Y IL++ KK+++ Sbjct: 245 PPTADGLLYAILMVMKKLKQQKT 267 >gi|302536203|ref|ZP_07288545.1| NADH dehydrogenase subunit NuoB2 [Streptomyces sp. C] gi|302445098|gb|EFL16914.1| NADH dehydrogenase subunit NuoB2 [Streptomyces sp. C] Length = 203 Score = 209 bits (532), Expect = 1e-52, Method: Composition-based stats. Identities = 86/182 (47%), Positives = 113/182 (62%), Gaps = 11/182 (6%) Query: 1 MGLTTVNQKIISGQSSC-SLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMT 59 M +T Q K SR++ E + ++ W R SL Sbjct: 1 MDVTPAVTPEPQPQPQLLPEPKRLGVLSRLAPE---------PMKVVLNWGRRYSLWVFN 51 Query: 60 FGLACCAVEMMQASMPRYDLERFGFAPR-ASPRQSDVMIVAGTLTNKMASALRRVYDQMP 118 FGLACCA+E + ASM R+D R G P PRQ+D+MIV+GT+T+KMA A++R+Y+QMP Sbjct: 52 FGLACCAIEFIAASMARHDFIRLGVIPFAPGPRQADLMIVSGTVTDKMAPAVKRLYEQMP 111 Query: 119 EPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 EP+YVIS G+C+N GG Y SYSV +G D+I+PVD+YVPGCPP EAL+ GIL LQ+KI Sbjct: 112 EPKYVISFGACSNCGGPYWDSYSVTKGVDQIIPVDVYVPGCPPRPEALLQGILKLQEKIA 171 Query: 179 RV 180 R Sbjct: 172 RE 173 >gi|167945481|ref|ZP_02532555.1| NADH dehydrogenase subunit B [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 140 Score = 209 bits (532), Expect = 1e-52, Method: Composition-based stats. Identities = 102/138 (73%), Positives = 114/138 (82%), Gaps = 1/138 (0%) Query: 47 VTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKM 106 + WARTGSL MTFGLACCAVEMM A+ RYD++RFG R SPRQSDVMIVAGTL NKM Sbjct: 1 INWARTGSLWPMTFGLACCAVEMMHAAAARYDMDRFGIVFRPSPRQSDVMIVAGTLVNKM 60 Query: 107 ASA-LRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEA 165 A+ R + PEPR+VISMGSCANGGGYYHYSY+VVRGCDR+VPVDIYVPGCPPTAEA Sbjct: 61 AAWRCARSTTRWPEPRWVISMGSCANGGGYYHYSYAVVRGCDRVVPVDIYVPGCPPTAEA 120 Query: 166 LIYGILLLQKKIRRVGNV 183 L+YGI+ LQ KIRR + Sbjct: 121 LLYGIIQLQDKIRRTCTI 138 >gi|254821135|ref|ZP_05226136.1| NADH dehydrogenase subunit B [Mycobacterium intracellulare ATCC 13950] Length = 184 Score = 209 bits (532), Expect = 2e-52, Method: Composition-based stats. Identities = 75/151 (49%), Positives = 109/151 (72%), Gaps = 2/151 (1%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89 E G L+++V+++ + R SL TFGLACCA+EMM + PR+D+ RFG A+ Sbjct: 4 EEQLPGGILLSTVEKVAGYVRKNSLWPATFGLACCAIEMMATAGPRFDIARFGMERFSAT 63 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQ+D+MIVAG ++ KMA LR++YDQM EP++V++MG CA+ GG ++ Y++V+G D + Sbjct: 64 PRQADLMIVAGRVSQKMAPVLRQIYDQMAEPKWVLAMGVCASSGGMFNN-YAIVQGVDHV 122 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 VPVDIY+PGCPP E L+Y IL L +KI+ + Sbjct: 123 VPVDIYLPGCPPRPEMLLYAILKLHEKIQEM 153 >gi|282891849|ref|ZP_06300329.1| hypothetical protein pah_c198o042 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281498282|gb|EFB40621.1| hypothetical protein pah_c198o042 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 157 Score = 209 bits (532), Expect = 2e-52, Method: Composition-based stats. Identities = 84/142 (59%), Positives = 107/142 (75%), Gaps = 2/142 (1%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQSDVM 96 F+V + +L+ WAR+ SL FGLACCA+EMM A+ RYD+ RFG RASPRQSDVM Sbjct: 11 FIVAPLQKLIDWARSNSLWPAQFGLACCAIEMMSAAASRYDMARFGMEVFRASPRQSDVM 70 Query: 97 IVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV 156 IVAG ++ KMA LR +Y+QM EP++VI+MG CA+ GG Y+ Y+V+ G D+IVPVD+YV Sbjct: 71 IVAGRVSQKMAPVLRTIYEQMLEPKWVIAMGDCASTGGVYNN-YAVIPGVDQIVPVDVYV 129 Query: 157 PGCPPTAEALIYGILLLQKKIR 178 GCPP EALI G++LLQ KIR Sbjct: 130 AGCPPRPEALIDGLILLQNKIR 151 >gi|320009166|gb|ADW04016.1| NADH-quinone oxidoreductase, B subunit [Streptomyces flavogriseus ATCC 33331] Length = 205 Score = 209 bits (532), Expect = 2e-52, Method: Composition-based stats. Identities = 78/136 (57%), Positives = 102/136 (75%), Gaps = 1/136 (0%) Query: 46 LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR-ASPRQSDVMIVAGTLTN 104 ++ W R SL FGLACCA+E + ASM R+D R G P PRQ+D+M+V+GT+T+ Sbjct: 35 VLNWGRRYSLWVFNFGLACCAIEFIAASMARHDFIRLGVIPFAPGPRQADLMVVSGTVTD 94 Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164 KMA A++R+Y+QMPEP+YVIS G+C+N GG Y SYSV +G D+I+PVD+YVPGCPP E Sbjct: 95 KMAPAVKRLYEQMPEPKYVISFGACSNCGGPYWDSYSVTKGVDQIIPVDVYVPGCPPRPE 154 Query: 165 ALIYGILLLQKKIRRV 180 AL+ GIL LQ+KI R Sbjct: 155 ALLQGILKLQEKIARE 170 >gi|302543443|ref|ZP_07295785.1| NADH dehydrogenase I, B subunit [Streptomyces hygroscopicus ATCC 53653] gi|302461061|gb|EFL24154.1| NADH dehydrogenase I, B subunit [Streptomyces himastatinicus ATCC 53653] Length = 184 Score = 209 bits (532), Expect = 2e-52, Method: Composition-based stats. Identities = 84/152 (55%), Positives = 105/152 (69%), Gaps = 2/152 (1%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89 E GFL+T+V+Q AR S+ TFGLACCA+EMM RYDL RFG R S Sbjct: 4 EEKLPSGFLLTTVEQAAGLARKSSVFPATFGLACCAIEMMTTGAGRYDLARFGMEVFRGS 63 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQ+D+MIVAG ++ KMA LR+VYDQMP P++VISMG CA+ GG ++ Y++V+G D I Sbjct: 64 PRQADLMIVAGRVSQKMAPVLRQVYDQMPNPKWVISMGVCASTGGMFNN-YAIVQGVDHI 122 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181 VPVDIY+PGCPP E L+ IL L +KIR Sbjct: 123 VPVDIYLPGCPPRPEMLMDAILKLHEKIREEK 154 >gi|262200419|ref|YP_003271627.1| NADH-quinone oxidoreductase subunit B [Gordonia bronchialis DSM 43247] gi|262083766|gb|ACY19734.1| NADH-quinone oxidoreductase, B subunit [Gordonia bronchialis DSM 43247] Length = 184 Score = 209 bits (532), Expect = 2e-52, Method: Composition-based stats. Identities = 80/151 (52%), Positives = 110/151 (72%), Gaps = 2/151 (1%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89 E GFL+++V++L + R GSL TFGLACCA+EMM + RYDL RFG RAS Sbjct: 4 EERLPSGFLLSTVEELAGFMRKGSLWPATFGLACCAIEMMATTSGRYDLARFGMEAFRAS 63 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQ+D+MIVAG ++ KMA LR++YDQM EP++V++MG CA+ GG ++ Y++V+G D + Sbjct: 64 PRQADLMIVAGRVSQKMAPVLRQIYDQMVEPKWVLAMGVCASSGGMFNN-YAIVQGVDHV 122 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 VPVDIY+PGCPP E L+ IL L +KI+ + Sbjct: 123 VPVDIYLPGCPPRPEMLLNAILKLHEKIQEM 153 >gi|238065263|sp|Q0RRW7|NUOB_FRAAA RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B Length = 281 Score = 209 bits (532), Expect = 2e-52, Method: Composition-based stats. Identities = 81/148 (54%), Positives = 106/148 (71%), Gaps = 2/148 (1%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89 E G L+ SV++L W+R SL TFGLACCA+EMM RYDL RFG RAS Sbjct: 4 EEKLPGGVLLASVEKLANWSRRSSLWPATFGLACCAIEMMSTGAGRYDLSRFGMEVFRAS 63 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQ+D+MIVAG ++ KMA LR++YDQMPEP++V+SMG CA+ GG ++ Y++V+G D I Sbjct: 64 PRQADLMIVAGRVSQKMAPVLRQIYDQMPEPKWVLSMGVCASSGGMFNN-YAIVQGVDHI 122 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKI 177 VPVD+Y+PGCPP E L+ I+ L +KI Sbjct: 123 VPVDMYLPGCPPRPEMLMDAIIKLHEKI 150 >gi|284164402|ref|YP_003402681.1| NADH-quinone oxidoreductase, B subunit [Haloterrigena turkmenica DSM 5511] gi|284014057|gb|ADB60008.1| NADH-quinone oxidoreductase, B subunit [Haloterrigena turkmenica DSM 5511] Length = 235 Score = 209 bits (531), Expect = 2e-52, Method: Composition-based stats. Identities = 80/172 (46%), Positives = 112/172 (65%), Gaps = 2/172 (1%) Query: 9 KIISGQSSCSLEKVDADF-SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAV 67 + S E D F S++ F++T D+ + W R S+ + FG+ACC++ Sbjct: 16 PSTDTRDSRIGEGPDDRFNSKLREAFGSTPFILTKFDKFMNWVRGNSMFMLQFGIACCSI 75 Query: 68 EMMQASMPRYDLERFGF-APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISM 126 EMM ++DL+RFG PRASPRQ+DVMIV GT+ +K ++RVYDQMPEP++V+ M Sbjct: 76 EMMHTYAIKHDLDRFGAGVPRASPRQADVMIVPGTIVSKFGPRMKRVYDQMPEPKFVVGM 135 Query: 127 GSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 GSC GG + Y+VV+G + I+PVDI+VPGCPP EAL+YGI LQ++IR Sbjct: 136 GSCTISGGPFQEGYNVVKGAEEIIPVDIHVPGCPPRPEALVYGIAKLQERIR 187 >gi|397899|emb|CAA48361.1| NADH dehydrogenase I, subunit nuoB [Escherichia coli] Length = 220 Score = 209 bits (531), Expect = 2e-52, Method: Composition-based stats. Identities = 74/169 (43%), Positives = 107/169 (63%), Gaps = 3/169 (1%) Query: 14 QSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQAS 73 L+K + + E+ +K + ++ +V W R S+ FGL+CC VEM+ Sbjct: 14 NDRYPLQKQEIVTDPLEQEV-NKNVFMGKLNDMVNWGRKNSIWPYNFGLSCCYVEMVTLF 72 Query: 74 MPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANG 132 +D+ RFG RASPRQ+D+M+VAGT KMA ++R+YDQM EP++VISMG+CAN Sbjct: 73 TAVHDVARFGAEVLRASPRQADLMVVAGTCFTKMAPVIQRLYDQMLEPKWVISMGACANS 132 Query: 133 GGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181 GG Y YSVV+G D+ +PVD+Y+PGCPP EA + ++LLQ+ I + Sbjct: 133 GGMY-DIYSVVQGVDKFIPVDVYIPGCPPRPEAYMQALMLLQESIGKER 180 >gi|302559060|ref|ZP_07311402.1| NADH dehydrogenase I, 20 kDa subunit [Streptomyces griseoflavus Tu4000] gi|302476678|gb|EFL39771.1| NADH dehydrogenase I, 20 kDa subunit [Streptomyces griseoflavus Tu4000] Length = 205 Score = 209 bits (531), Expect = 2e-52, Method: Composition-based stats. Identities = 84/177 (47%), Positives = 114/177 (64%), Gaps = 10/177 (5%) Query: 5 TVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLAC 64 VN ++G K +R++ E + ++ W R SL FGLAC Sbjct: 2 DVNPAAVAGPVPLPEPKRLGALARLAPE---------PMKVVLNWGRRYSLWVFNFGLAC 52 Query: 65 CAVEMMQASMPRYDLERFGFAPR-ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYV 123 CA+E + ASM R+D R G P PRQ+D+M+V+GT+T+KMA A++R+Y+QMPEP+YV Sbjct: 53 CAIEFIAASMARHDFIRLGVIPFAPGPRQADLMVVSGTVTDKMAPAVKRLYEQMPEPKYV 112 Query: 124 ISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 IS G+C+N GG Y SYSV +G D+I+PVD+YVPGCPP EAL+ GIL LQ+KI R Sbjct: 113 ISFGACSNCGGPYWDSYSVTKGVDQIIPVDVYVPGCPPRPEALLQGILKLQEKIARE 169 >gi|328884356|emb|CCA57595.1| NADH-ubiquinone oxidoreductase chain B [Streptomyces venezuelae ATCC 10712] Length = 193 Score = 209 bits (531), Expect = 2e-52, Method: Composition-based stats. Identities = 79/136 (58%), Positives = 102/136 (75%), Gaps = 1/136 (0%) Query: 46 LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR-ASPRQSDVMIVAGTLTN 104 ++ W R SL FGLACCA+E + ASM R+D R G P PRQ+D+MIV+GT+T+ Sbjct: 29 VLNWGRRYSLWVFNFGLACCAIEFIAASMARHDFIRLGVIPFAPGPRQADLMIVSGTVTD 88 Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164 KMA A++R+Y+QMPEP+YVIS G+C+N GG Y SYSV +G D+I+PVD+YVPGCPP E Sbjct: 89 KMAPAVKRLYEQMPEPKYVISFGACSNCGGPYWDSYSVTKGVDQIIPVDVYVPGCPPRPE 148 Query: 165 ALIYGILLLQKKIRRV 180 AL+ GIL LQ+KI R Sbjct: 149 ALLQGILKLQEKIARE 164 >gi|154795228|ref|NP_848064.3| NADH dehydrogenase subunit K [Adiantum capillus-veneris] Length = 223 Score = 209 bits (531), Expect = 2e-52, Method: Composition-based stats. Identities = 67/149 (44%), Positives = 98/149 (65%), Gaps = 1/149 (0%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93 + S+ W+R SL + +G +CC +E R+D +R+G PR+SPRQ+ Sbjct: 10 MSDSIFMASISDFSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 69 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGCDRIVPV 152 D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++PV Sbjct: 70 DLIVTAGTITMKMAPSLIRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 129 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVG 181 DIY+PGCPP EA++ + L+KKI R Sbjct: 130 DIYLPGCPPKPEAIMDAVTKLRKKIARNR 158 >gi|269794074|ref|YP_003313529.1| NADH dehydrogenase subunit B [Sanguibacter keddieii DSM 10542] gi|269096259|gb|ACZ20695.1| NADH dehydrogenase subunit B [Sanguibacter keddieii DSM 10542] Length = 183 Score = 209 bits (531), Expect = 2e-52, Method: Composition-based stats. Identities = 84/148 (56%), Positives = 110/148 (74%), Gaps = 2/148 (1%) Query: 32 EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASP 90 E GFL+T+V+ L + R GSL +TFGLACCA+EMM A R+DL RFG RASP Sbjct: 4 EEAPSGFLLTTVEDLAGYFRKGSLWPVTFGLACCAIEMMAAGASRFDLSRFGMEVFRASP 63 Query: 91 RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150 RQ+D+MIVAG ++ KMA +R+VYDQMPEP++V+SMG CA+ GG ++ Y++V+G D IV Sbjct: 64 RQADLMIVAGRVSQKMAPVVRQVYDQMPEPKWVLSMGVCASSGGMFNN-YAIVQGVDHIV 122 Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIR 178 PVDIY+PGCPP E LI IL L ++I+ Sbjct: 123 PVDIYLPGCPPRPEMLINSILALHQQIQ 150 >gi|307822802|ref|ZP_07653033.1| NADH-quinone oxidoreductase, B subunit [Methylobacter tundripaludum SV96] gi|307736406|gb|EFO07252.1| NADH-quinone oxidoreductase, B subunit [Methylobacter tundripaludum SV96] Length = 212 Score = 208 bits (530), Expect = 2e-52, Method: Composition-based stats. Identities = 74/168 (44%), Positives = 107/168 (63%), Gaps = 2/168 (1%) Query: 15 SSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASM 74 + + + E + FL ++ +V W ++ S+ FGL+CC VEM A Sbjct: 6 TKAETDPAPQSGQQTYEEALRRNFLFARLEDMVAWGQSNSVWPFNFGLSCCYVEMATAFT 65 Query: 75 PRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGG 133 R+D+ RFG R SPRQ+D+++++GT+ KMA ++R+YDQ+ EPR+VISMGSCAN G Sbjct: 66 SRHDIARFGSEVIRGSPRQADLIVISGTVFRKMAPVVKRLYDQLLEPRWVISMGSCANSG 125 Query: 134 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181 G Y YSVV+G D+ +PVD+YVPGCPP EAL+ G++LLQ I + Sbjct: 126 GMY-DIYSVVQGVDKFLPVDVYVPGCPPRPEALLQGLMLLQDAIGKER 172 >gi|260887648|ref|ZP_05898911.1| NADH dehydrogenase I, B subunit [Selenomonas sputigena ATCC 35185] gi|330838007|ref|YP_004412587.1| NADH-quinone oxidoreductase, B subunit [Selenomonas sputigena ATCC 35185] gi|260862664|gb|EEX77164.1| NADH dehydrogenase I, B subunit [Selenomonas sputigena ATCC 35185] gi|329745771|gb|AEB99127.1| NADH-quinone oxidoreductase, B subunit [Selenomonas sputigena ATCC 35185] Length = 169 Score = 208 bits (530), Expect = 2e-52, Method: Composition-based stats. Identities = 75/157 (47%), Positives = 106/157 (67%), Gaps = 1/157 (0%) Query: 29 ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PR 87 I + +VTSVD + WAR+ S+ + GLACC++EMM + R+DL RFG+ R Sbjct: 6 IVPAALRENVIVTSVDAVFKWARSRSIWPLASGLACCSIEMMATAASRFDLARFGYEVFR 65 Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCD 147 A PRQ+D++IVAGTLT KM L R+Y++MPEP+YVI+MG+C GG + SY+ V+ D Sbjct: 66 ACPRQADLLIVAGTLTWKMTPPLIRLYEEMPEPKYVIAMGNCNIHGGPFTDSYATVKCLD 125 Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 ++PVD+Y+PGCPP EALI ++ L+ KI+ K Sbjct: 126 EVLPVDLYLPGCPPRPEALIDAMIKLRNKIQHPELAK 162 >gi|82658723|gb|ABB88530.1| menaquinone oxidoreductase [Streptomyces sp. Eco86] Length = 184 Score = 208 bits (530), Expect = 2e-52, Method: Composition-based stats. Identities = 82/149 (55%), Positives = 105/149 (70%), Gaps = 2/149 (1%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89 E GFL+++V+Q W R S+ TFGLACCA E+M A RYDL RFG R S Sbjct: 4 EESLPSGFLLSTVEQAAGWVRKASVFPATFGLACCAFELMAAGAGRYDLARFGMEVFRGS 63 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQ+D+MIVAG ++ KMA LR++YDQMP P++VISMG CA+ GG ++ Y++V+G D I Sbjct: 64 PRQADLMIVAGRVSQKMAPVLRQIYDQMPNPKWVISMGVCASSGGMFNN-YAIVQGVDHI 122 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIR 178 VPVDIY+PGCPP E L+ IL L +KIR Sbjct: 123 VPVDIYLPGCPPRPEMLMDAILKLHEKIR 151 >gi|13541946|ref|NP_111634.1| NADH dehydrogenase subunit B [Thermoplasma volcanium GSS1] Length = 157 Score = 208 bits (530), Expect = 2e-52, Method: Composition-based stats. Identities = 85/151 (56%), Positives = 107/151 (70%), Gaps = 1/151 (0%) Query: 29 ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APR 87 + + G + T+V+Q WAR+ SL +TFGLACCA+EMM D+ RFG R Sbjct: 2 VEIKTGDVGIVTTTVEQAYEWARSNSLWPLTFGLACCAIEMMAIQASDMDISRFGSEIFR 61 Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCD 147 SPRQSD+MIV+GT+T KMA +RR+YD+MP P+YVI+ G C GG Y+ YSVV G D Sbjct: 62 NSPRQSDLMIVSGTVTKKMAPRVRRIYDEMPYPKYVIAQGVCVIQGGPYNQGYSVVLGVD 121 Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 ++VPVD+YVPGCPPT EAL GI+LLQKKIR Sbjct: 122 KVVPVDVYVPGCPPTPEALTNGIILLQKKIR 152 >gi|82777695|ref|YP_404044.1| NADH dehydrogenase subunit B [Shigella dysenteriae Sd197] gi|309785009|ref|ZP_07679642.1| NADH-quinone oxidoreductase, B subunit [Shigella dysenteriae 1617] gi|123562059|sp|Q32DQ2|NUOB_SHIDS RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|81241843|gb|ABB62553.1| NADH dehydrogenase I chain B [Shigella dysenteriae Sd197] gi|308927379|gb|EFP72853.1| NADH-quinone oxidoreductase, B subunit [Shigella dysenteriae 1617] Length = 220 Score = 208 bits (530), Expect = 2e-52, Method: Composition-based stats. Identities = 74/169 (43%), Positives = 108/169 (63%), Gaps = 3/169 (1%) Query: 14 QSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQAS 73 L+K + + E+ +K + ++ +V W R S+ FGL+CC VEM+ + Sbjct: 14 NDRYPLQKQEIVTDPLEQEV-NKNVFMGKLNDMVNWGRKNSIWPYNFGLSCCYVEMVTSF 72 Query: 74 MPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANG 132 +D+ RFG RASPRQ+D+M+VAGT KMA ++R+YDQM EP++VISMG+CAN Sbjct: 73 TAVHDVARFGAEVLRASPRQADLMVVAGTCFTKMAPVIQRLYDQMLEPKWVISMGACANS 132 Query: 133 GGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181 GG Y YSVV+G D+ +PVD+Y+PGCPP EA + ++LLQ+ I + Sbjct: 133 GGMY-DIYSVVQGVDKFIPVDVYIPGCPPRPEAYMQALMLLQESIAKER 180 >gi|294056096|ref|YP_003549754.1| NADH-quinone oxidoreductase, B subunit [Coraliomargarita akajimensis DSM 45221] gi|293615429|gb|ADE55584.1| NADH-quinone oxidoreductase, B subunit [Coraliomargarita akajimensis DSM 45221] Length = 183 Score = 208 bits (530), Expect = 3e-52, Method: Composition-based stats. Identities = 77/152 (50%), Positives = 103/152 (67%), Gaps = 2/152 (1%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQ 92 +VT D ++ W R S+ M GLACCA+E+M A R+D+ RFG R SPRQ Sbjct: 14 VEGEVIVTQADAVINWIRKHSVWPMPMGLACCAIELMAAGGSRFDISRFGMEVMRFSPRQ 73 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 +D MIVAGT+T KMA +RR+Y+QM EP++V++MG+CA+ GG Y SYS ++G DRIVPV Sbjct: 74 ADCMIVAGTVTYKMAEVVRRIYEQMAEPKWVVAMGACASSGGMYR-SYSTLQGVDRIVPV 132 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 D+Y+ GCPP EAL+ ++ LQ KI R K Sbjct: 133 DVYISGCPPRPEALLDAMIKLQDKIGRERAFK 164 >gi|145225061|ref|YP_001135739.1| NADH dehydrogenase subunit B [Mycobacterium gilvum PYR-GCK] gi|315445430|ref|YP_004078309.1| NADH dehydrogenase subunit B [Mycobacterium sp. Spyr1] gi|238065177|sp|A4TDB9|NUOB_MYCGI RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|145217547|gb|ABP46951.1| NADH dehydrogenase subunit B [Mycobacterium gilvum PYR-GCK] gi|315263733|gb|ADU00475.1| NADH dehydrogenase subunit B [Mycobacterium sp. Spyr1] Length = 184 Score = 208 bits (530), Expect = 3e-52, Method: Composition-based stats. Identities = 76/151 (50%), Positives = 110/151 (72%), Gaps = 2/151 (1%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89 E G L+++V+++ + R GSL TFGLACCA+EMM + PR+D+ RFG A+ Sbjct: 4 EEKLPGGILLSTVEKVAGYVRKGSLWPATFGLACCAIEMMATAGPRFDISRFGMERFSAT 63 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQ+D+MIVAG ++ KMA LR++YDQM EP++V++MG CA+ GG ++ Y+VV+G D + Sbjct: 64 PRQADLMIVAGRVSQKMAPVLRQIYDQMAEPKWVLAMGVCASSGGMFNN-YAVVQGVDHV 122 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 VPVDIY+PGCPP E L++ IL L KI+++ Sbjct: 123 VPVDIYLPGCPPRPEMLLHAILKLHDKIQQM 153 >gi|297192751|ref|ZP_06910149.1| NADH dehydrogenase subunit I B [Streptomyces pristinaespiralis ATCC 25486] gi|297151481|gb|EDY64969.2| NADH dehydrogenase subunit I B [Streptomyces pristinaespiralis ATCC 25486] Length = 232 Score = 208 bits (530), Expect = 3e-52, Method: Composition-based stats. Identities = 87/185 (47%), Positives = 117/185 (63%), Gaps = 7/185 (3%) Query: 1 MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVT----SVDQLVTWARTGSLM 56 M +T + + S S+ + A + E G L + ++ W R SL Sbjct: 1 MDVTPTSNQTPSPASTPAPASTPA--PELLPEPRRLGALARLAPEPMKVILNWGRRYSLW 58 Query: 57 WMTFGLACCAVEMMQASMPRYDLERFGFAPR-ASPRQSDVMIVAGTLTNKMASALRRVYD 115 FGLACCA+E + ASM R+D R G P PRQ+D+MIV+GT+T+KMA A++R+Y+ Sbjct: 59 VFNFGLACCAIEFIAASMARHDFIRLGVIPFAPGPRQADLMIVSGTVTDKMAPAVKRLYE 118 Query: 116 QMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175 QMPEP+YVIS G+C+N GG Y SYSV +G D+I+PVD+YVPGCPP EAL+ GIL LQ+ Sbjct: 119 QMPEPKYVISFGACSNCGGPYWDSYSVTKGVDQIIPVDVYVPGCPPRPEALLQGILKLQE 178 Query: 176 KIRRV 180 KI R Sbjct: 179 KIARE 183 >gi|196231863|ref|ZP_03130719.1| NADH-quinone oxidoreductase, B subunit [Chthoniobacter flavus Ellin428] gi|196223985|gb|EDY18499.1| NADH-quinone oxidoreductase, B subunit [Chthoniobacter flavus Ellin428] Length = 178 Score = 208 bits (530), Expect = 3e-52, Method: Composition-based stats. Identities = 76/152 (50%), Positives = 108/152 (71%), Gaps = 2/152 (1%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQ 92 ++T +D + W R SL M GLACCA+E+M A R+D+ RFG R SPRQ Sbjct: 13 IEGNVIITQLDAAMNWMRKNSLWPMPMGLACCAIELMAAGASRFDIARFGAEVMRFSPRQ 72 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 SDVMIVAGT+T KMA A++R++DQMPEP++ I+MG+CA+ GG Y SY+V++G D+++PV Sbjct: 73 SDVMIVAGTVTYKMALAVKRIWDQMPEPKWCIAMGACASSGGMYR-SYAVLQGIDQLIPV 131 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 D+Y+ GCPP EAL+ G++ LQ+KI ++ Sbjct: 132 DVYISGCPPRPEALLEGLMKLQRKIETEPALR 163 >gi|189218226|ref|YP_001938868.1| NADH dehydrogenase subunit B [Methylacidiphilum infernorum V4] gi|238065168|sp|B3DXN5|NUOB_METI4 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|189185084|gb|ACD82269.1| NADH:ubiquinone oxidoreductase 20 kD subunit or related Fe-S oxidoreductase [Methylacidiphilum infernorum V4] Length = 170 Score = 208 bits (530), Expect = 3e-52, Method: Composition-based stats. Identities = 76/148 (51%), Positives = 110/148 (74%), Gaps = 2/148 (1%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVM 96 +VT +D + W R SL M GLACCA+E+M ++ R+D+ RFG R SPRQ DVM Sbjct: 17 VVVTRLDAAINWMRKNSLWPMPMGLACCAIELMASACARFDISRFGAEVMRFSPRQCDVM 76 Query: 97 IVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV 156 IVAGT+T KMA +++R+Y+QMP+P++VISMG+CA+ GG Y SYSV++G D+++PVD+YV Sbjct: 77 IVAGTVTYKMAYSVKRIYEQMPDPKWVISMGACASSGGMYR-SYSVLQGIDQLIPVDVYV 135 Query: 157 PGCPPTAEALIYGILLLQKKIRRVGNVK 184 GCPP EAL+ ++ LQ+KI + +++ Sbjct: 136 SGCPPRPEALLDALIKLQEKIDKEASLR 163 >gi|296268308|ref|YP_003650940.1| NADH-quinone oxidoreductase subunit B [Thermobispora bispora DSM 43833] gi|296091095|gb|ADG87047.1| NADH-quinone oxidoreductase, B subunit [Thermobispora bispora DSM 43833] Length = 170 Score = 208 bits (529), Expect = 3e-52, Method: Composition-based stats. Identities = 78/133 (58%), Positives = 104/133 (78%), Gaps = 1/133 (0%) Query: 46 LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS-PRQSDVMIVAGTLTN 104 ++ W R SL FGLACCA+E + SM R+D RFG P A+ PRQ+D+MIV+GT+T+ Sbjct: 23 VLNWGRRYSLWVFNFGLACCAIEFIATSMSRHDFIRFGVIPFANGPRQADLMIVSGTVTD 82 Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164 KMA A++R+Y+QMP+P+YVIS G+C+N GG Y SYSV +G D+I+PVD+YVPGCPP E Sbjct: 83 KMAPAVKRLYEQMPDPKYVISFGACSNCGGPYWDSYSVTKGVDQIIPVDVYVPGCPPRPE 142 Query: 165 ALIYGILLLQKKI 177 AL++GIL LQ+KI Sbjct: 143 ALLHGILKLQEKI 155 >gi|283786355|ref|YP_003366220.1| NADH-quinone oxidoreductase subunit B [Citrobacter rodentium ICC168] gi|282949809|emb|CBG89432.1| NADH-quinone oxidoreductase subunit B [Citrobacter rodentium ICC168] Length = 220 Score = 208 bits (529), Expect = 3e-52, Method: Composition-based stats. Identities = 75/169 (44%), Positives = 106/169 (62%), Gaps = 3/169 (1%) Query: 14 QSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQAS 73 L+K + + E+ +K + + LV W R S+ FGL+CC VEM+ + Sbjct: 14 NDRYPLQKQEIVTDPLEQEV-NKNVFMGKLHDLVNWGRKNSIWPYNFGLSCCYVEMVTSF 72 Query: 74 MPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANG 132 +D+ RFG RASPRQ+D+M+VAGT KMA ++R+YDQM EP++VISMG+CAN Sbjct: 73 TAVHDVARFGAEVLRASPRQADLMVVAGTCFTKMAPVIQRLYDQMLEPKWVISMGACANS 132 Query: 133 GGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181 GG Y YSVV+G D+ +PVD+Y+PGCPP EA + ++LLQ I + Sbjct: 133 GGMY-DIYSVVQGVDKFIPVDVYIPGCPPRPEAYMQALMLLQDSIGKER 180 >gi|15789834|ref|NP_279658.1| NADH dehydrogenase/oxidoreductase [Halobacterium sp. NRC-1] gi|169235555|ref|YP_001688755.1| NADH dehydrogenase-like complex subunit B [Halobacterium salinarum R1] gi|10580226|gb|AAG19138.1| NADH dehydrogenase/oxidoreductase [Halobacterium sp. NRC-1] gi|167726621|emb|CAP13406.1| NADH dehydrogenase-like complex subunit B [Halobacterium salinarum R1] Length = 235 Score = 208 bits (529), Expect = 3e-52, Method: Composition-based stats. Identities = 77/178 (43%), Positives = 119/178 (66%), Gaps = 2/178 (1%) Query: 2 GLTTVNQKIISGQSSCSLEKVDADF-SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTF 60 +T + + S + + + VD F SR+ F++T D+ + W R S+ + F Sbjct: 9 SITDTSDPLTSTRDARMGDGVDDRFNSRLREAFGSTPFILTKFDKFMNWVRGSSMFMLQF 68 Query: 61 GLACCAVEMMQASMPRYDLERFGF-APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119 G+ACC++EMM ++DL+RF PRASPRQ+DVMIV GT+ +K A ++RVYDQMPE Sbjct: 69 GIACCSIEMMHTYSVKHDLDRFHAGVPRASPRQADVMIVPGTIVSKFAPRMKRVYDQMPE 128 Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 P++V++MG+C+ GG + Y+VV+G + ++PVDI++PGCPP EAL+YG+ LQ++I Sbjct: 129 PKFVVNMGNCSTSGGPFQEGYNVVKGAEEVIPVDIHIPGCPPRPEALVYGVAKLQERI 186 >gi|15832425|ref|NP_311198.1| NADH dehydrogenase subunit B [Escherichia coli O157:H7 str. Sakai] gi|16130222|ref|NP_416790.1| NADH:ubiquinone oxidoreductase, chain B [Escherichia coli str. K-12 substr. MG1655] gi|24113659|ref|NP_708169.1| NADH dehydrogenase subunit B [Shigella flexneri 2a str. 301] gi|26248674|ref|NP_754714.1| NADH dehydrogenase subunit B [Escherichia coli CFT073] gi|30063713|ref|NP_837884.1| NADH dehydrogenase subunit B [Shigella flexneri 2a str. 2457T] gi|74312805|ref|YP_311224.1| NADH dehydrogenase subunit B [Shigella sonnei Ss046] gi|82544765|ref|YP_408712.1| NADH dehydrogenase subunit B [Shigella boydii Sb227] gi|89109105|ref|AP_002885.1| NADH:ubiquinone oxidoreductase, chain B [Escherichia coli str. K-12 substr. W3110] gi|91211579|ref|YP_541565.1| NADH dehydrogenase subunit B [Escherichia coli UTI89] gi|110642491|ref|YP_670221.1| NADH dehydrogenase subunit B [Escherichia coli 536] gi|110806250|ref|YP_689770.1| NADH dehydrogenase subunit B [Shigella flexneri 5 str. 8401] gi|117624476|ref|YP_853389.1| NADH dehydrogenase subunit B [Escherichia coli APEC O1] gi|157155733|ref|YP_001463630.1| NADH dehydrogenase subunit B [Escherichia coli E24377A] gi|157161775|ref|YP_001459093.1| NADH dehydrogenase subunit B [Escherichia coli HS] gi|168748136|ref|ZP_02773158.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli O157:H7 str. EC4113] gi|168755039|ref|ZP_02780046.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli O157:H7 str. EC4401] gi|168761274|ref|ZP_02786281.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli O157:H7 str. EC4501] gi|168767913|ref|ZP_02792920.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli O157:H7 str. EC4486] gi|168772987|ref|ZP_02797994.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli O157:H7 str. EC4196] gi|168780142|ref|ZP_02805149.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli O157:H7 str. EC4076] gi|168787194|ref|ZP_02812201.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli O157:H7 str. EC869] gi|168798457|ref|ZP_02823464.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli O157:H7 str. EC508] gi|170019404|ref|YP_001724358.1| NADH dehydrogenase subunit B [Escherichia coli ATCC 8739] gi|170081904|ref|YP_001731224.1| NADH:ubiquinone oxidoreductase, chain B [Escherichia coli str. K-12 substr. DH10B] gi|170681065|ref|YP_001744485.1| NADH dehydrogenase subunit B [Escherichia coli SMS-3-5] gi|170767483|ref|ZP_02901936.1| NADH-quinone oxidoreductase, B subunit [Escherichia albertii TW07627] gi|187732051|ref|YP_001881108.1| NADH dehydrogenase subunit B [Shigella boydii CDC 3083-94] gi|188491795|ref|ZP_02999065.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli 53638] gi|191166481|ref|ZP_03028311.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli B7A] gi|191169994|ref|ZP_03031548.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli F11] gi|193062269|ref|ZP_03043364.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli E22] gi|193068244|ref|ZP_03049208.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli E110019] gi|194427226|ref|ZP_03059777.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli B171] gi|194433374|ref|ZP_03065654.1| NADH-quinone oxidoreductase, B subunit [Shigella dysenteriae 1012] gi|194435968|ref|ZP_03068070.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli 101-1] gi|195935664|ref|ZP_03081046.1| NADH dehydrogenase subunit B [Escherichia coli O157:H7 str. EC4024] gi|208808363|ref|ZP_03250700.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli O157:H7 str. EC4206] gi|208814079|ref|ZP_03255408.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli O157:H7 str. EC4045] gi|208821251|ref|ZP_03261571.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli O157:H7 str. EC4042] gi|209400872|ref|YP_002271696.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli O157:H7 str. EC4115] gi|209919735|ref|YP_002293819.1| NADH dehydrogenase subunit B [Escherichia coli SE11] gi|215487500|ref|YP_002329931.1| NADH dehydrogenase subunit B [Escherichia coli O127:H6 str. E2348/69] gi|217327914|ref|ZP_03443997.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli O157:H7 str. TW14588] gi|218548264|ref|YP_002382055.1| NADH dehydrogenase subunit B [Escherichia fergusonii ATCC 35469] gi|218554843|ref|YP_002387756.1| NADH dehydrogenase subunit B [Escherichia coli IAI1] gi|218559200|ref|YP_002392113.1| NADH dehydrogenase subunit B [Escherichia coli S88] gi|218690447|ref|YP_002398659.1| NADH dehydrogenase subunit B [Escherichia coli ED1a] gi|218695886|ref|YP_002403553.1| NADH dehydrogenase subunit B [Escherichia coli 55989] gi|218700761|ref|YP_002408390.1| NADH dehydrogenase subunit B [Escherichia coli IAI39] gi|218705817|ref|YP_002413336.1| NADH dehydrogenase subunit B [Escherichia coli UMN026] gi|227887343|ref|ZP_04005148.1| NADH dehydrogenase subunit B [Escherichia coli 83972] gi|237704761|ref|ZP_04535242.1| trifunctional NADH dehydrogenase I subunit B/C/D [Escherichia sp. 3_2_53FAA] gi|238901462|ref|YP_002927258.1| NADH:ubiquinone oxidoreductase, chain B [Escherichia coli BW2952] gi|253772791|ref|YP_003035622.1| NADH dehydrogenase subunit B [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254162296|ref|YP_003045404.1| NADH dehydrogenase subunit B [Escherichia coli B str. REL606] gi|254794179|ref|YP_003079016.1| NADH dehydrogenase subunit B [Escherichia coli O157:H7 str. TW14359] gi|256017557|ref|ZP_05431422.1| NADH dehydrogenase subunit B [Shigella sp. D9] gi|256022029|ref|ZP_05435894.1| NADH dehydrogenase subunit B [Escherichia sp. 4_1_40B] gi|260844874|ref|YP_003222652.1| NADH:ubiquinone oxidoreductase, chain B [Escherichia coli O103:H2 str. 12009] gi|260856331|ref|YP_003230222.1| NADH:ubiquinone oxidoreductase, chain B [Escherichia coli O26:H11 str. 11368] gi|260869010|ref|YP_003235412.1| NADH:ubiquinone oxidoreductase, chain B [Escherichia coli O111:H- str. 11128] gi|261223259|ref|ZP_05937540.1| NADH:ubiquinone oxidoreductase, chain B [Escherichia coli O157:H7 str. FRIK2000] gi|261259191|ref|ZP_05951724.1| NADH:ubiquinone oxidoreductase, chain B [Escherichia coli O157:H7 str. FRIK966] gi|291283528|ref|YP_003500346.1| NADH-quinone oxidoreductase subunit B [Escherichia coli O55:H7 str. CB9615] gi|293405753|ref|ZP_06649745.1| NADH-quinone oxidoreductase subunit B [Escherichia coli FVEC1412] gi|293410647|ref|ZP_06654223.1| NADH dehydrogenase subunit B [Escherichia coli B354] gi|293415580|ref|ZP_06658223.1| NADH-quinone oxidoreductase subunit B [Escherichia coli B185] gi|293446624|ref|ZP_06663046.1| NADH dehydrogenase I subunit B [Escherichia coli B088] gi|297517328|ref|ZP_06935714.1| NADH dehydrogenase subunit B [Escherichia coli OP50] gi|298381436|ref|ZP_06991035.1| NADH-quinone oxidoreductase subunit B [Escherichia coli FVEC1302] gi|300818112|ref|ZP_07098324.1| NADH dehydrogenase subunit B [Escherichia coli MS 107-1] gi|300822158|ref|ZP_07102300.1| NADH dehydrogenase subunit B [Escherichia coli MS 119-7] gi|300896961|ref|ZP_07115442.1| NADH dehydrogenase subunit B [Escherichia coli MS 198-1] gi|300903672|ref|ZP_07121588.1| NADH dehydrogenase subunit B [Escherichia coli MS 84-1] gi|300924546|ref|ZP_07140510.1| NADH dehydrogenase subunit B [Escherichia coli MS 182-1] gi|300931360|ref|ZP_07146691.1| NADH dehydrogenase subunit B [Escherichia coli MS 187-1] gi|300936852|ref|ZP_07151741.1| NADH dehydrogenase subunit B [Escherichia coli MS 21-1] gi|300948569|ref|ZP_07162662.1| NADH dehydrogenase subunit B [Escherichia coli MS 116-1] gi|300956453|ref|ZP_07168742.1| NADH dehydrogenase subunit B [Escherichia coli MS 175-1] gi|300981071|ref|ZP_07175343.1| NADH dehydrogenase subunit B [Escherichia coli MS 200-1] gi|300983382|ref|ZP_07176566.1| NADH dehydrogenase subunit B [Escherichia coli MS 45-1] gi|301024085|ref|ZP_07187799.1| NADH dehydrogenase subunit B [Escherichia coli MS 69-1] gi|301049040|ref|ZP_07196025.1| NADH dehydrogenase subunit B [Escherichia coli MS 185-1] gi|301303254|ref|ZP_07209379.1| NADH dehydrogenase subunit B [Escherichia coli MS 124-1] gi|301328779|ref|ZP_07221827.1| NADH dehydrogenase subunit B [Escherichia coli MS 78-1] gi|301647616|ref|ZP_07247412.1| NADH dehydrogenase subunit B [Escherichia coli MS 146-1] gi|306814602|ref|ZP_07448764.1| NADH dehydrogenase subunit B [Escherichia coli NC101] gi|307138951|ref|ZP_07498307.1| NADH dehydrogenase subunit B [Escherichia coli H736] gi|307311153|ref|ZP_07590797.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli W] gi|309793166|ref|ZP_07687594.1| NADH dehydrogenase subunit B [Escherichia coli MS 145-7] gi|312967585|ref|ZP_07781800.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli 2362-75] gi|312973454|ref|ZP_07787626.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli 1827-70] gi|331642925|ref|ZP_08344060.1| NADH dehydrogenase I subunit B [Escherichia coli H736] gi|331647942|ref|ZP_08349034.1| NADH dehydrogenase I subunit B [Escherichia coli M605] gi|331653729|ref|ZP_08354730.1| NADH dehydrogenase I subunit B [Escherichia coli M718] gi|331658369|ref|ZP_08359331.1| NADH dehydrogenase I subunit B [Escherichia coli TA206] gi|331663802|ref|ZP_08364712.1| NADH dehydrogenase I subunit B [Escherichia coli TA143] gi|331668985|ref|ZP_08369833.1| NADH dehydrogenase I subunit B [Escherichia coli TA271] gi|331673790|ref|ZP_08374553.1| NADH dehydrogenase I subunit B [Escherichia coli TA280] gi|331678233|ref|ZP_08378908.1| NADH dehydrogenase I subunit B [Escherichia coli H591] gi|331683958|ref|ZP_08384554.1| NADH dehydrogenase I subunit B [Escherichia coli H299] gi|332278567|ref|ZP_08390980.1| NADH:ubiquinone oxidoreductase chain B [Shigella sp. D9] gi|84028744|sp|P0AFC9|NUOB_ECO57 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B; AltName: Full=NUO2 gi|84028745|sp|P0AFC8|NUOB_ECOL6 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B; AltName: Full=NUO2 gi|84028746|sp|P0AFC7|NUOB_ECOLI RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B; AltName: Full=NUO2 gi|84028747|sp|P0AFD0|NUOB_SHIFL RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|122423113|sp|Q1R9D0|NUOB_ECOUT RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|122957324|sp|Q0T2K0|NUOB_SHIF8 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|123147875|sp|Q0TFF9|NUOB_ECOL5 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|123559142|sp|Q31YH4|NUOB_SHIBS RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|123616691|sp|Q3YZS3|NUOB_SHISS RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|238065125|sp|A7ZPA1|NUOB_ECO24 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|238065126|sp|B7UFU5|NUOB_ECO27 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|238065127|sp|B7MG51|NUOB_ECO45 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|238065128|sp|B7LBP8|NUOB_ECO55 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|238065129|sp|B5YXS7|NUOB_ECO5E RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|238065130|sp|B7NNW6|NUOB_ECO7I RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|238065131|sp|B7MXW6|NUOB_ECO81 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|238065132|sp|B7M5W6|NUOB_ECO8A RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|238065133|sp|B1X8Z9|NUOB_ECODH RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|238065134|sp|A8A2F6|NUOB_ECOHS RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|238065135|sp|A1ADD5|NUOB_ECOK1 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|238065136|sp|B1IXQ5|NUOB_ECOLC RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|238065137|sp|B7N5P9|NUOB_ECOLU RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|238065138|sp|B6I7N7|NUOB_ECOSE RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|238065139|sp|B1LLP0|NUOB_ECOSM RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|238065143|sp|B7LM45|NUOB_ESCF3 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|238065216|sp|B2TW68|NUOB_SHIB3 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|259514662|sp|C4ZUD0|NUOB_ECOBW RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|26109079|gb|AAN81282.1|AE016763_241 NADH dehydrogenase I chain B [Escherichia coli CFT073] gi|1788624|gb|AAC75347.1| NADH:ubiquinone oxidoreductase, chain B [Escherichia coli str. K-12 substr. MG1655] gi|13362641|dbj|BAB36594.1| NADH dehydrogenase I chain B [Escherichia coli O157:H7 str. Sakai] gi|24052724|gb|AAN43876.1| NADH dehydrogenase I chain B [Shigella flexneri 2a str. 301] gi|30041968|gb|AAP17694.1| NADH dehydrogenase I chain B [Shigella flexneri 2a str. 2457T] gi|73856282|gb|AAZ88989.1| NADH dehydrogenase I chain B [Shigella sonnei Ss046] gi|81246176|gb|ABB66884.1| NADH dehydrogenase I chain B [Shigella boydii Sb227] gi|85675345|dbj|BAA16121.2| NADH:ubiquinone oxidoreductase, chain B [Escherichia coli str. K12 substr. W3110] gi|91073153|gb|ABE08034.1| NADH dehydrogenase I chain B [Escherichia coli UTI89] gi|110344083|gb|ABG70320.1| NADH dehydrogenase I chain B [Escherichia coli 536] gi|110615798|gb|ABF04465.1| NADH dehydrogenase I chain B [Shigella flexneri 5 str. 8401] gi|115513600|gb|ABJ01675.1| NADH dehydrogenase subunit B [Escherichia coli APEC O1] gi|157067455|gb|ABV06710.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli HS] gi|157077763|gb|ABV17471.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli E24377A] gi|169754332|gb|ACA77031.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli ATCC 8739] gi|169889739|gb|ACB03446.1| NADH:ubiquinone oxidoreductase, chain B [Escherichia coli str. K-12 substr. DH10B] gi|170123817|gb|EDS92748.1| NADH-quinone oxidoreductase, B subunit [Escherichia albertii TW07627] gi|170518783|gb|ACB16961.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli SMS-3-5] gi|187429043|gb|ACD08317.1| NADH-quinone oxidoreductase, B subunit [Shigella boydii CDC 3083-94] gi|187771211|gb|EDU35055.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli O157:H7 str. EC4196] gi|188017366|gb|EDU55488.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli O157:H7 str. EC4113] gi|188486994|gb|EDU62097.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli 53638] gi|189001940|gb|EDU70926.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli O157:H7 str. EC4076] gi|189357731|gb|EDU76150.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli O157:H7 str. EC4401] gi|189362998|gb|EDU81417.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli O157:H7 str. EC4486] gi|189368240|gb|EDU86656.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli O157:H7 str. EC4501] gi|189372840|gb|EDU91256.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli O157:H7 str. EC869] gi|189378981|gb|EDU97397.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli O157:H7 str. EC508] gi|190903441|gb|EDV63160.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli B7A] gi|190909510|gb|EDV69095.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli F11] gi|192931935|gb|EDV84534.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli E22] gi|192958523|gb|EDV88962.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli E110019] gi|194414847|gb|EDX31118.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli B171] gi|194418468|gb|EDX34557.1| NADH-quinone oxidoreductase, B subunit [Shigella dysenteriae 1012] gi|194424696|gb|EDX40681.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli 101-1] gi|208728164|gb|EDZ77765.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli O157:H7 str. EC4206] gi|208735356|gb|EDZ84043.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli O157:H7 str. EC4045] gi|208741374|gb|EDZ89056.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli O157:H7 str. EC4042] gi|209162272|gb|ACI39705.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli O157:H7 str. EC4115] gi|209765078|gb|ACI80851.1| NADH dehydrogenase I chain B [Escherichia coli] gi|209765080|gb|ACI80852.1| NADH dehydrogenase I chain B [Escherichia coli] gi|209765082|gb|ACI80853.1| NADH dehydrogenase I chain B [Escherichia coli] gi|209765084|gb|ACI80854.1| NADH dehydrogenase I chain B [Escherichia coli] gi|209765086|gb|ACI80855.1| NADH dehydrogenase I chain B [Escherichia coli] gi|209912994|dbj|BAG78068.1| NADH dehydrogenase I chain B [Escherichia coli SE11] gi|215265572|emb|CAS09975.1| NADH: ubiquinone oxidoreductase, chain B [Escherichia coli O127:H6 str. E2348/69] gi|217320281|gb|EEC28706.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli O157:H7 str. TW14588] gi|218352618|emb|CAU98399.1| NADH:ubiquinone oxidoreductase, chain B [Escherichia coli 55989] gi|218355805|emb|CAQ88418.1| NADH:ubiquinone oxidoreductase, chain B [Escherichia fergusonii ATCC 35469] gi|218361611|emb|CAQ99203.1| NADH:ubiquinone oxidoreductase, chain B [Escherichia coli IAI1] gi|218365969|emb|CAR03713.1| NADH:ubiquinone oxidoreductase, chain B [Escherichia coli S88] gi|218370747|emb|CAR18560.1| NADH:ubiquinone oxidoreductase, chain B [Escherichia coli IAI39] gi|218428011|emb|CAR08932.2| NADH:ubiquinone oxidoreductase, chain B [Escherichia coli ED1a] gi|218432914|emb|CAR13808.1| NADH:ubiquinone oxidoreductase, chain B [Escherichia coli UMN026] gi|222034043|emb|CAP76784.1| NadH-quinone oxidoreductase subunit B [Escherichia coli LF82] gi|226901127|gb|EEH87386.1| trifunctional NADH dehydrogenase I subunit B/C/D [Escherichia sp. 3_2_53FAA] gi|227835693|gb|EEJ46159.1| NADH dehydrogenase subunit B [Escherichia coli 83972] gi|238861867|gb|ACR63865.1| NADH:ubiquinone oxidoreductase, chain B [Escherichia coli BW2952] gi|242377920|emb|CAQ32689.1| NADH:ubiquinone oxidoreductase, chain B, subunit of connecting fragment of NADH dehydrogenase I and NADH:ubiquinone oxidoreductase I [Escherichia coli BL21(DE3)] gi|253323835|gb|ACT28437.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253974197|gb|ACT39868.1| NADH dehydrogenase subunit B [Escherichia coli B str. REL606] gi|253978364|gb|ACT44034.1| NADH dehydrogenase subunit B [Escherichia coli BL21(DE3)] gi|254593579|gb|ACT72940.1| NADH:ubiquinone oxidoreductase, chain B [Escherichia coli O157:H7 str. TW14359] gi|257754980|dbj|BAI26482.1| NADH:ubiquinone oxidoreductase, chain B [Escherichia coli O26:H11 str. 11368] gi|257760021|dbj|BAI31518.1| NADH:ubiquinone oxidoreductase, chain B [Escherichia coli O103:H2 str. 12009] gi|257765366|dbj|BAI36861.1| NADH:ubiquinone oxidoreductase, chain B [Escherichia coli O111:H- str. 11128] gi|260448620|gb|ACX39042.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli DH1] gi|281179374|dbj|BAI55704.1| NADH dehydrogenase I chain B [Escherichia coli SE15] gi|281601728|gb|ADA74712.1| NADH-quinone oxidoreductase subunit B [Shigella flexneri 2002017] gi|284922275|emb|CBG35360.1| NADH-quinone oxidoreductase subunit B [Escherichia coli 042] gi|290763401|gb|ADD57362.1| NADH-quinone oxidoreductase subunit B [Escherichia coli O55:H7 str. CB9615] gi|291323454|gb|EFE62882.1| NADH dehydrogenase I subunit B [Escherichia coli B088] gi|291427961|gb|EFF00988.1| NADH-quinone oxidoreductase subunit B [Escherichia coli FVEC1412] gi|291433228|gb|EFF06207.1| NADH-quinone oxidoreductase subunit B [Escherichia coli B185] gi|291471115|gb|EFF13599.1| NADH dehydrogenase subunit B [Escherichia coli B354] gi|294490294|gb|ADE89050.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli IHE3034] gi|298278878|gb|EFI20392.1| NADH-quinone oxidoreductase subunit B [Escherichia coli FVEC1302] gi|300299149|gb|EFJ55534.1| NADH dehydrogenase subunit B [Escherichia coli MS 185-1] gi|300307684|gb|EFJ62204.1| NADH dehydrogenase subunit B [Escherichia coli MS 200-1] gi|300316723|gb|EFJ66507.1| NADH dehydrogenase subunit B [Escherichia coli MS 175-1] gi|300359229|gb|EFJ75099.1| NADH dehydrogenase subunit B [Escherichia coli MS 198-1] gi|300396741|gb|EFJ80279.1| NADH dehydrogenase subunit B [Escherichia coli MS 69-1] gi|300404328|gb|EFJ87866.1| NADH dehydrogenase subunit B [Escherichia coli MS 84-1] gi|300408548|gb|EFJ92086.1| NADH dehydrogenase subunit B [Escherichia coli MS 45-1] gi|300419264|gb|EFK02575.1| NADH dehydrogenase subunit B [Escherichia coli MS 182-1] gi|300451917|gb|EFK15537.1| NADH dehydrogenase subunit B [Escherichia coli MS 116-1] gi|300458039|gb|EFK21532.1| NADH dehydrogenase subunit B [Escherichia coli MS 21-1] gi|300460822|gb|EFK24315.1| NADH dehydrogenase subunit B [Escherichia coli MS 187-1] gi|300525288|gb|EFK46357.1| NADH dehydrogenase subunit B [Escherichia coli MS 119-7] gi|300529256|gb|EFK50318.1| NADH dehydrogenase subunit B [Escherichia coli MS 107-1] gi|300841428|gb|EFK69188.1| NADH dehydrogenase subunit B [Escherichia coli MS 124-1] gi|300844841|gb|EFK72601.1| NADH dehydrogenase subunit B [Escherichia coli MS 78-1] gi|301074243|gb|EFK89049.1| NADH dehydrogenase subunit B [Escherichia coli MS 146-1] gi|305851996|gb|EFM52448.1| NADH dehydrogenase subunit B [Escherichia coli NC101] gi|306908659|gb|EFN39156.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli W] gi|307554349|gb|ADN47124.1| NADH dehydrogenase I chain B [Escherichia coli ABU 83972] gi|307626177|gb|ADN70481.1| NADH dehydrogenase subunit B [Escherichia coli UM146] gi|308123452|gb|EFO60714.1| NADH dehydrogenase subunit B [Escherichia coli MS 145-7] gi|309702599|emb|CBJ01927.1| NADH-quinone oxidoreductase subunit B [Escherichia coli ETEC H10407] gi|310332049|gb|EFP99284.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli 1827-70] gi|312287782|gb|EFR15687.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli 2362-75] gi|312946905|gb|ADR27732.1| NADH dehydrogenase subunit B [Escherichia coli O83:H1 str. NRG 857C] gi|313651110|gb|EFS15509.1| NADH-quinone oxidoreductase, B subunit [Shigella flexneri 2a str. 2457T] gi|315061579|gb|ADT75906.1| NADH:ubiquinone oxidoreductase, chain B [Escherichia coli W] gi|315136921|dbj|BAJ44080.1| NADH-quinone oxidoreductase subunit B [Escherichia coli DH1] gi|315255221|gb|EFU35189.1| NADH dehydrogenase subunit B [Escherichia coli MS 85-1] gi|315285913|gb|EFU45351.1| NADH dehydrogenase subunit B [Escherichia coli MS 110-3] gi|315292240|gb|EFU51592.1| NADH dehydrogenase subunit B [Escherichia coli MS 153-1] gi|315298114|gb|EFU57383.1| NADH dehydrogenase subunit B [Escherichia coli MS 16-3] gi|315615556|gb|EFU96188.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli 3431] gi|320177169|gb|EFW52181.1| NADH-ubiquinone oxidoreductase chain B [Shigella dysenteriae CDC 74-1112] gi|320178740|gb|EFW53703.1| NADH-ubiquinone oxidoreductase chain B [Shigella boydii ATCC 9905] gi|320183382|gb|EFW58234.1| NADH-ubiquinone oxidoreductase chain B [Shigella flexneri CDC 796-83] gi|320192092|gb|EFW66737.1| NADH-ubiquinone oxidoreductase chain B [Escherichia coli O157:H7 str. EC1212] gi|320196154|gb|EFW70778.1| NADH-ubiquinone oxidoreductase chain B [Escherichia coli WV_060327] gi|320199875|gb|EFW74464.1| NADH-ubiquinone oxidoreductase chain B [Escherichia coli EC4100B] gi|320641114|gb|EFX10593.1| NADH dehydrogenase subunit B [Escherichia coli O157:H7 str. G5101] gi|320646502|gb|EFX15421.1| NADH dehydrogenase subunit B [Escherichia coli O157:H- str. 493-89] gi|320651599|gb|EFX19979.1| NADH dehydrogenase subunit B [Escherichia coli O157:H- str. H 2687] gi|320657351|gb|EFX25153.1| NADH dehydrogenase subunit B [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320663053|gb|EFX30370.1| NADH dehydrogenase subunit B [Escherichia coli O55:H7 str. USDA 5905] gi|320667871|gb|EFX34779.1| NADH dehydrogenase subunit B [Escherichia coli O157:H7 str. LSU-61] gi|323156437|gb|EFZ42592.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli EPECa14] gi|323161621|gb|EFZ47506.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli E128010] gi|323168543|gb|EFZ54223.1| NADH-quinone oxidoreductase, B subunit [Shigella sonnei 53G] gi|323171969|gb|EFZ57613.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli LT-68] gi|323176788|gb|EFZ62378.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli 1180] gi|323184394|gb|EFZ69770.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli 1357] gi|323187988|gb|EFZ73283.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli RN587/1] gi|323377841|gb|ADX50109.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli KO11] gi|323936577|gb|EGB32864.1| NADH-quinone oxidoreductase [Escherichia coli E1520] gi|323941016|gb|EGB37203.1| NADH-quinone oxidoreductase [Escherichia coli E482] gi|323944800|gb|EGB40866.1| NADH-quinone oxidoreductase [Escherichia coli H120] gi|323952080|gb|EGB47954.1| NADH-quinone oxidoreductase [Escherichia coli H252] gi|323956053|gb|EGB51806.1| NADH-quinone oxidoreductase [Escherichia coli H263] gi|323961470|gb|EGB57080.1| NADH-quinone oxidoreductase [Escherichia coli H489] gi|323967728|gb|EGB63140.1| NADH-quinone oxidoreductase [Escherichia coli M863] gi|323973008|gb|EGB68202.1| NADH-quinone oxidoreductase [Escherichia coli TA007] gi|323977512|gb|EGB72598.1| NADH-quinone oxidoreductase [Escherichia coli TW10509] gi|324006663|gb|EGB75882.1| NADH dehydrogenase subunit B [Escherichia coli MS 57-2] gi|324013173|gb|EGB82392.1| NADH dehydrogenase subunit B [Escherichia coli MS 60-1] gi|324020883|gb|EGB90102.1| NADH dehydrogenase subunit B [Escherichia coli MS 117-3] gi|324112819|gb|EGC06795.1| NADH-quinone oxidoreductase [Escherichia fergusonii B253] gi|324117835|gb|EGC11734.1| NADH-quinone oxidoreductase [Escherichia coli E1167] gi|325496678|gb|EGC94537.1| NADH dehydrogenase subunit B [Escherichia fergusonii ECD227] gi|326339638|gb|EGD63449.1| NADH-ubiquinone oxidoreductase chain B [Escherichia coli O157:H7 str. 1125] gi|326344100|gb|EGD67861.1| NADH-ubiquinone oxidoreductase chain B [Escherichia coli O157:H7 str. 1044] gi|327252557|gb|EGE64216.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli STEC_7v] gi|330912112|gb|EGH40622.1| NADH-ubiquinone oxidoreductase chain B [Escherichia coli AA86] gi|331039723|gb|EGI11943.1| NADH dehydrogenase I subunit B [Escherichia coli H736] gi|331043666|gb|EGI15804.1| NADH dehydrogenase I subunit B [Escherichia coli M605] gi|331048578|gb|EGI20654.1| NADH dehydrogenase I subunit B [Escherichia coli M718] gi|331056617|gb|EGI28626.1| NADH dehydrogenase I subunit B [Escherichia coli TA206] gi|331059601|gb|EGI31578.1| NADH dehydrogenase I subunit B [Escherichia coli TA143] gi|331064179|gb|EGI36090.1| NADH dehydrogenase I subunit B [Escherichia coli TA271] gi|331069063|gb|EGI40455.1| NADH dehydrogenase I subunit B [Escherichia coli TA280] gi|331074693|gb|EGI46013.1| NADH dehydrogenase I subunit B [Escherichia coli H591] gi|331078910|gb|EGI50112.1| NADH dehydrogenase I subunit B [Escherichia coli H299] gi|332088417|gb|EGI93535.1| NADH-quinone oxidoreductase, B subunit [Shigella boydii 5216-82] gi|332090619|gb|EGI95715.1| NADH-quinone oxidoreductase, B subunit [Shigella dysenteriae 155-74] gi|332093356|gb|EGI98414.1| NADH-quinone oxidoreductase, B subunit [Shigella boydii 3594-74] gi|332100919|gb|EGJ04265.1| NADH:ubiquinone oxidoreductase chain B [Shigella sp. D9] gi|332344068|gb|AEE57402.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli UMNK88] gi|332754935|gb|EGJ85300.1| NADH-quinone oxidoreductase, B subunit [Shigella flexneri 4343-70] gi|332755336|gb|EGJ85700.1| NADH-quinone oxidoreductase, B subunit [Shigella flexneri K-671] gi|332756446|gb|EGJ86797.1| NADH-quinone oxidoreductase, B subunit [Shigella flexneri 2747-71] gi|332766106|gb|EGJ96316.1| nuoB [Shigella flexneri 2930-71] gi|333001431|gb|EGK20999.1| NADH-quinone oxidoreductase, B subunit [Shigella flexneri VA-6] gi|333001890|gb|EGK21456.1| NADH-quinone oxidoreductase, B subunit [Shigella flexneri K-218] gi|333002654|gb|EGK22214.1| NADH-quinone oxidoreductase, B subunit [Shigella flexneri K-272] gi|333016449|gb|EGK35780.1| NADH-quinone oxidoreductase, B subunit [Shigella flexneri K-304] gi|333016538|gb|EGK35868.1| NADH-quinone oxidoreductase, B subunit [Shigella flexneri K-227] Length = 220 Score = 208 bits (529), Expect = 3e-52, Method: Composition-based stats. Identities = 74/169 (43%), Positives = 108/169 (63%), Gaps = 3/169 (1%) Query: 14 QSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQAS 73 L+K + + E+ +K + ++ +V W R S+ FGL+CC VEM+ + Sbjct: 14 NDRYPLQKQEIVTDPLEQEV-NKNVFMGKLNDMVNWGRKNSIWPYNFGLSCCYVEMVTSF 72 Query: 74 MPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANG 132 +D+ RFG RASPRQ+D+M+VAGT KMA ++R+YDQM EP++VISMG+CAN Sbjct: 73 TAVHDVARFGAEVLRASPRQADLMVVAGTCFTKMAPVIQRLYDQMLEPKWVISMGACANS 132 Query: 133 GGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181 GG Y YSVV+G D+ +PVD+Y+PGCPP EA + ++LLQ+ I + Sbjct: 133 GGMY-DIYSVVQGVDKFIPVDVYIPGCPPRPEAYMQALMLLQESIGKER 180 >gi|226306213|ref|YP_002766173.1| NADH-quinone oxidoreductase chain B [Rhodococcus erythropolis PR4] gi|229490898|ref|ZP_04384733.1| NADH-quinone oxidoreductase subunit b [Rhodococcus erythropolis SK121] gi|259514682|sp|C0ZYJ9|NUOB_RHOE4 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|226185330|dbj|BAH33434.1| NADH-quinone oxidoreductase chain B [Rhodococcus erythropolis PR4] gi|229322288|gb|EEN88074.1| NADH-quinone oxidoreductase subunit b [Rhodococcus erythropolis SK121] Length = 184 Score = 208 bits (529), Expect = 3e-52, Method: Composition-based stats. Identities = 81/151 (53%), Positives = 109/151 (72%), Gaps = 2/151 (1%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89 E GFL+T+V+ L +AR GSL TFGLACCA+EMM + R+DL RFG RAS Sbjct: 4 EEKLPSGFLLTTVEGLAGYARKGSLWPATFGLACCAIEMMATTSGRFDLARFGMEAFRAS 63 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQ+D++IVAG ++ KM LR+VYDQM EP++V++MG CA+ GG ++ Y+VV+G D I Sbjct: 64 PRQADLLIVAGRVSQKMGPVLRQVYDQMAEPKWVLAMGVCASSGGMFNN-YAVVQGVDHI 122 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 VPVDIY+PGCPP E L+ I+ L +KI+ + Sbjct: 123 VPVDIYLPGCPPRPEMLLNAIIELHRKIQEM 153 >gi|254391175|ref|ZP_05006382.1| NADH dehydrogenase I chain B [Streptomyces clavuligerus ATCC 27064] gi|197704869|gb|EDY50681.1| NADH dehydrogenase I chain B [Streptomyces clavuligerus ATCC 27064] Length = 237 Score = 208 bits (529), Expect = 4e-52, Method: Composition-based stats. Identities = 79/136 (58%), Positives = 102/136 (75%), Gaps = 1/136 (0%) Query: 46 LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR-ASPRQSDVMIVAGTLTN 104 ++ W R SL FGLACCA+E + ASM R+D R G P PRQ+D+MIV+GT+T+ Sbjct: 54 VLNWGRRYSLWVFNFGLACCAIEFIAASMARHDFIRLGVIPFAPGPRQADLMIVSGTVTD 113 Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164 KMA A++R+Y+QMPEP+YVIS G+C+N GG Y SYSV +G D+I+PVD+YVPGCPP E Sbjct: 114 KMAPAVKRLYEQMPEPKYVISFGACSNCGGPYWDSYSVTKGVDQIIPVDVYVPGCPPRPE 173 Query: 165 ALIYGILLLQKKIRRV 180 AL+ GIL LQ+KI R Sbjct: 174 ALLQGILKLQEKIARE 189 >gi|55378230|ref|YP_136080.1| NADH dehydrogenase I B subunit [Haloarcula marismortui ATCC 43049] gi|55230955|gb|AAV46374.1| NADH dehydrogenase I B subunit [Haloarcula marismortui ATCC 43049] Length = 230 Score = 208 bits (529), Expect = 4e-52, Method: Composition-based stats. Identities = 77/176 (43%), Positives = 116/176 (65%), Gaps = 2/176 (1%) Query: 4 TTVNQKIISGQSSCSLEKVDADFSR-ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62 T + +S Q + + D F+ + F++T D+ + W R S+ + FG+ Sbjct: 6 TPPAVEDVSTQEARMGDGADDRFNSTLREAFGSTPFILTKFDKFMNWVRGSSMFMLQFGI 65 Query: 63 ACCAVEMMQASMPRYDLERFGF-APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPR 121 ACC++EM+ ++DL+RFG PRASPRQ+DV+IV GT+ +K A ++RVYDQMPEP+ Sbjct: 66 ACCSIEMIHTYAIKHDLDRFGSGVPRASPRQADVIIVPGTIVSKFAPRMKRVYDQMPEPK 125 Query: 122 YVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 +V+SMGSC GG + Y+V++G + ++PVDI+VPGCPP EALIYG+ LQ++I Sbjct: 126 FVVSMGSCTISGGPFQEGYNVIKGAEEVIPVDIHVPGCPPRPEALIYGVAKLQERI 181 >gi|320529348|ref|ZP_08030436.1| NADH dehydrogenase subunit B [Selenomonas artemidis F0399] gi|320138314|gb|EFW30208.1| NADH dehydrogenase subunit B [Selenomonas artemidis F0399] Length = 178 Score = 208 bits (529), Expect = 4e-52, Method: Composition-based stats. Identities = 79/160 (49%), Positives = 106/160 (66%), Gaps = 1/160 (0%) Query: 25 DFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF 84 + + E V +DQL WA S+ ++ GLACCA+EMM + R+DL RFG+ Sbjct: 2 EIAERVPESLRHNVFVVKIDQLFRWAHASSIWPLSSGLACCAIEMMSTATARFDLARFGY 61 Query: 85 A-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVV 143 R PRQ+D++IVAGTLT KMA + R+Y+QMPEP+YVI+MG+C GG + SYSVV Sbjct: 62 EVFRPCPRQADLLIVAGTLTWKMAEPIVRLYEQMPEPKYVIAMGACTIAGGPFADSYSVV 121 Query: 144 RGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 G D I+PVD+Y+PGCPP EAL+ G+L L++KI V Sbjct: 122 PGIDDILPVDVYIPGCPPRPEALMDGMLKLREKILHPERV 161 >gi|294814429|ref|ZP_06773072.1| NADH dehydrogenase I chain B [Streptomyces clavuligerus ATCC 27064] gi|326442819|ref|ZP_08217553.1| putative NADH dehydrogenase chain B [Streptomyces clavuligerus ATCC 27064] gi|294327028|gb|EFG08671.1| NADH dehydrogenase I chain B [Streptomyces clavuligerus ATCC 27064] Length = 239 Score = 208 bits (529), Expect = 4e-52, Method: Composition-based stats. Identities = 79/136 (58%), Positives = 102/136 (75%), Gaps = 1/136 (0%) Query: 46 LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR-ASPRQSDVMIVAGTLTN 104 ++ W R SL FGLACCA+E + ASM R+D R G P PRQ+D+MIV+GT+T+ Sbjct: 56 VLNWGRRYSLWVFNFGLACCAIEFIAASMARHDFIRLGVIPFAPGPRQADLMIVSGTVTD 115 Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164 KMA A++R+Y+QMPEP+YVIS G+C+N GG Y SYSV +G D+I+PVD+YVPGCPP E Sbjct: 116 KMAPAVKRLYEQMPEPKYVISFGACSNCGGPYWDSYSVTKGVDQIIPVDVYVPGCPPRPE 175 Query: 165 ALIYGILLLQKKIRRV 180 AL+ GIL LQ+KI R Sbjct: 176 ALLQGILKLQEKIARE 191 >gi|15802834|ref|NP_288861.1| NADH dehydrogenase subunit B [Escherichia coli O157:H7 EDL933] gi|25298992|pir||D85869 NADH dehydrogenase I chain B [imported] - Escherichia coli (strain O157:H7, substrain EDL933) gi|12516640|gb|AAG57416.1|AE005461_1 NADH dehydrogenase I chain B [Escherichia coli O157:H7 str. EDL933] Length = 220 Score = 207 bits (528), Expect = 4e-52, Method: Composition-based stats. Identities = 74/169 (43%), Positives = 108/169 (63%), Gaps = 3/169 (1%) Query: 14 QSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQAS 73 L+K + + E+ +K + ++ +V W R S+ FGL+CC VEM+ + Sbjct: 14 NDRYPLQKQEIVTDPLEQEV-NKNVFMGKLNDMVNWGRKNSIWPYNFGLSCCYVEMVTSF 72 Query: 74 MPRYDLERFGF-APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANG 132 +D+ RFG RASPRQ+D+M+VAGT KMA ++R+YDQM EP++VISMG+CAN Sbjct: 73 TAVHDVARFGAXVLRASPRQADLMVVAGTCFTKMAPVIQRLYDQMLEPKWVISMGACANS 132 Query: 133 GGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181 GG Y YSVV+G D+ +PVD+Y+PGCPP EA + ++LLQ+ I + Sbjct: 133 GGMY-DIYSVVQGVDKFIPVDVYIPGCPPRPEAYMQALMLLQESIGKER 180 >gi|120402882|ref|YP_952711.1| NADH dehydrogenase subunit B [Mycobacterium vanbaalenii PYR-1] gi|238065183|sp|A1T6A5|NUOB_MYCVP RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|119955700|gb|ABM12705.1| NADH dehydrogenase subunit B [Mycobacterium vanbaalenii PYR-1] Length = 184 Score = 207 bits (528), Expect = 4e-52, Method: Composition-based stats. Identities = 76/151 (50%), Positives = 110/151 (72%), Gaps = 2/151 (1%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89 E G L+++V+++ + R GSL TFGLACCA+EMM + PR+D+ RFG A+ Sbjct: 4 EERLPGGILLSTVEKVAGYVRKGSLWPATFGLACCAIEMMATAGPRFDISRFGMERFSAT 63 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQ+D+MIVAG ++ KMA LR++YDQM EP++V++MG CA+ GG ++ Y+VV+G D + Sbjct: 64 PRQADLMIVAGRVSQKMAPVLRQIYDQMAEPKWVLAMGVCASSGGMFNN-YAVVQGVDHV 122 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 VPVDIY+PGCPP E L++ IL L KI+++ Sbjct: 123 VPVDIYLPGCPPRPEMLLHAILKLHDKIQQM 153 >gi|301026957|ref|ZP_07190350.1| NADH dehydrogenase subunit B [Escherichia coli MS 196-1] gi|299879504|gb|EFI87715.1| NADH dehydrogenase subunit B [Escherichia coli MS 196-1] Length = 220 Score = 207 bits (528), Expect = 4e-52, Method: Composition-based stats. Identities = 74/169 (43%), Positives = 108/169 (63%), Gaps = 3/169 (1%) Query: 14 QSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQAS 73 L+K + + E+ +K + ++ +V W R S+ FGL+CC VEM+ + Sbjct: 14 NDRYPLQKQEIVTDPLDQEV-NKNVFMGKLNDMVNWGRKNSIWPYNFGLSCCYVEMVTSF 72 Query: 74 MPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANG 132 +D+ RFG RASPRQ+D+M+VAGT KMA ++R+YDQM EP++VISMG+CAN Sbjct: 73 TAVHDVARFGAEVLRASPRQADLMVVAGTCFTKMAPVIQRLYDQMLEPKWVISMGACANS 132 Query: 133 GGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181 GG Y YSVV+G D+ +PVD+Y+PGCPP EA + ++LLQ+ I + Sbjct: 133 GGMY-DIYSVVQGVDKFIPVDVYIPGCPPRPEAYMQALMLLQESIGKER 180 >gi|187736633|ref|YP_001878745.1| NADH-quinone oxidoreductase, B subunit [Akkermansia muciniphila ATCC BAA-835] gi|238065050|sp|B2UPT6|NUOB_AKKM8 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|187426685|gb|ACD05964.1| NADH-quinone oxidoreductase, B subunit [Akkermansia muciniphila ATCC BAA-835] Length = 193 Score = 207 bits (528), Expect = 5e-52, Method: Composition-based stats. Identities = 76/145 (52%), Positives = 105/145 (72%), Gaps = 2/145 (1%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQ 92 F+ T++D + W R SL M GL+CCA+E M + RYDL RFG R SPRQ Sbjct: 19 AEGNFVYTTLDAAINWIRKNSLWPMPMGLSCCAIEFMAVACSRYDLSRFGSEVTRFSPRQ 78 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 +DVMIVAGT+T KMA A+RR++DQMPEP++ I+MG+CA+ GG + SYSV++G D+I+PV Sbjct: 79 ADVMIVAGTVTYKMALAVRRIWDQMPEPKWCIAMGACASTGGMFR-SYSVLQGVDKILPV 137 Query: 153 DIYVPGCPPTAEALIYGILLLQKKI 177 D+Y+ GCPP EA++ +L L+KK+ Sbjct: 138 DVYISGCPPRPEAILEALLTLRKKL 162 >gi|313895909|ref|ZP_07829463.1| NADH-quinone oxidoreductase, B subunit [Selenomonas sp. oral taxon 137 str. F0430] gi|312975334|gb|EFR40795.1| NADH-quinone oxidoreductase, B subunit [Selenomonas sp. oral taxon 137 str. F0430] Length = 178 Score = 207 bits (527), Expect = 5e-52, Method: Composition-based stats. Identities = 79/160 (49%), Positives = 106/160 (66%), Gaps = 1/160 (0%) Query: 25 DFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF 84 + + E V +DQL WA S+ ++ GLACCA+EMM + R+DL RFG+ Sbjct: 2 EIAERVPESLRHNVFVVKIDQLFRWAHASSIWPLSSGLACCAIEMMSTATARFDLARFGY 61 Query: 85 A-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVV 143 R PRQ+D++IVAGTLT KMA + R+Y+QMPEP+YVI+MG+C GG + SYSVV Sbjct: 62 EVFRPCPRQADLLIVAGTLTWKMAEPIVRLYEQMPEPKYVIAMGACTIAGGPFADSYSVV 121 Query: 144 RGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 G D I+PVD+Y+PGCPP EAL+ G+L L++KI V Sbjct: 122 PGIDDILPVDVYIPGCPPRPEALMDGMLKLREKILHPERV 161 >gi|257453968|ref|ZP_05619244.1| NADH-quinone oxidoreductase subunit b [Enhydrobacter aerosaccus SK60] gi|257448633|gb|EEV23600.1| NADH-quinone oxidoreductase subunit b [Enhydrobacter aerosaccus SK60] Length = 220 Score = 207 bits (527), Expect = 5e-52, Method: Composition-based stats. Identities = 79/158 (50%), Positives = 102/158 (64%), Gaps = 6/158 (3%) Query: 29 ISSEITHKGFLVTSVDQL----VTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF 84 I E +K ++T ++ L W R SL FG +CC VE +DL RFG Sbjct: 23 IDEEEVNKNVVMTRLEDLTHSLANWGRKHSLWPFNFGTSCCYVEYATTLTGVHDLSRFGA 82 Query: 85 AP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVV 143 RASPRQ+DVMIVAGT KMA ++R+Y+QM EP++VISMG+CAN GG Y YSVV Sbjct: 83 EVIRASPRQADVMIVAGTCFMKMAPVIQRLYEQMLEPKWVISMGACANSGGMY-DVYSVV 141 Query: 144 RGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181 +G D+I+PVD+Y+PGCPP EALI I+LLQ+ I + Sbjct: 142 QGVDKIIPVDVYIPGCPPRPEALIQAIMLLQESITKER 179 >gi|254446527|ref|ZP_05060003.1| NADH-quinone oxidoreductase, B subunit subfamily [Verrucomicrobiae bacterium DG1235] gi|198260835|gb|EDY85143.1| NADH-quinone oxidoreductase, B subunit subfamily [Verrucomicrobiae bacterium DG1235] Length = 171 Score = 207 bits (527), Expect = 5e-52, Method: Composition-based stats. Identities = 78/155 (50%), Positives = 107/155 (69%), Gaps = 2/155 (1%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RAS 89 + G +V+ D ++ W RT SL M GLACCA+E+M A ++D+ RFG R S Sbjct: 11 NSKVEGGVIVSKADAVINWIRTHSLWPMPMGLACCAIELMAAGASKFDISRFGAEVMRFS 70 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQSDVMIVAGT+T KMA +RR+YDQM EP++VI+MG+CA+ GG Y SY+ ++G DRI Sbjct: 71 PRQSDVMIVAGTVTYKMAPIVRRIYDQMAEPKWVIAMGACASSGGMYR-SYATLQGVDRI 129 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 VPVD+Y+ GCPP EAL+ ++ LQ K+ + + Sbjct: 130 VPVDVYISGCPPRPEALLDALIKLQDKVSTETSTQ 164 >gi|169629221|ref|YP_001702870.1| NADH dehydrogenase subunit B [Mycobacterium abscessus ATCC 19977] gi|238065175|sp|B1MPG5|NUOB_MYCA9 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|169241188|emb|CAM62216.1| NADH-quinone oxidoreductase, B subunit NuoB [Mycobacterium abscessus] Length = 184 Score = 207 bits (527), Expect = 5e-52, Method: Composition-based stats. Identities = 77/151 (50%), Positives = 109/151 (72%), Gaps = 2/151 (1%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89 E GFL+++V+ L + R GSL TFGLACCA+EMM + PR+D+ RFG A+ Sbjct: 4 EEKLPSGFLLSTVETLAGYVRKGSLWPATFGLACCAIEMMSTAGPRFDIARFGMERFSAT 63 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQ+D+MIVAG ++ KMA LR++YDQM EP++V++MG CA+ GG ++ Y++V+G D + Sbjct: 64 PRQADLMIVAGRVSQKMAPVLRQIYDQMAEPKWVLAMGVCASSGGMFNN-YAIVQGVDHV 122 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 VPVDIY+PGCPP E L++ IL L +KI + Sbjct: 123 VPVDIYLPGCPPRPEMLLHAILKLHEKIAHM 153 >gi|282860763|ref|ZP_06269829.1| NADH-quinone oxidoreductase, B subunit [Streptomyces sp. ACTE] gi|282564499|gb|EFB70035.1| NADH-quinone oxidoreductase, B subunit [Streptomyces sp. ACTE] Length = 211 Score = 207 bits (527), Expect = 6e-52, Method: Composition-based stats. Identities = 79/136 (58%), Positives = 102/136 (75%), Gaps = 1/136 (0%) Query: 46 LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR-ASPRQSDVMIVAGTLTN 104 ++ W R SL FGLACCA+E + ASM R+D R G P PRQ+D+M+V+GT+T+ Sbjct: 41 VLNWGRRYSLWVFNFGLACCAIEFIAASMARHDFMRMGVIPFAPGPRQADLMVVSGTVTD 100 Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164 KMA A+RR+Y+QMPEP+YVIS G+C+N GG Y SYSV +G D+I+PVD+YVPGCPP E Sbjct: 101 KMAPAVRRLYEQMPEPKYVISFGACSNCGGPYWDSYSVTKGVDQIIPVDVYVPGCPPRPE 160 Query: 165 ALIYGILLLQKKIRRV 180 AL+ GIL LQ+KI R Sbjct: 161 ALLQGILKLQEKIARE 176 >gi|257387965|ref|YP_003177738.1| NADH-quinone oxidoreductase subunit beta [Halomicrobium mukohataei DSM 12286] gi|257170272|gb|ACV48031.1| NADH-quinone oxidoreductase, B subunit [Halomicrobium mukohataei DSM 12286] Length = 229 Score = 207 bits (527), Expect = 6e-52, Method: Composition-based stats. Identities = 76/175 (43%), Positives = 113/175 (64%), Gaps = 1/175 (0%) Query: 4 TTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLA 63 T + ++ D S++ F++T D+ + W R S+ + FG+A Sbjct: 6 PTPGDAQSTQEARIGSGADDRFNSKLREAFGSTPFILTKFDKFMNWVRGSSMFMLQFGIA 65 Query: 64 CCAVEMMQASMPRYDLERFGF-APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122 CC++EMM ++DL+RFG PRASPRQ+DV+IV GT+ +K A ++RVYDQMPEP++ Sbjct: 66 CCSIEMMHTYAVKHDLDRFGAGVPRASPRQADVIIVPGTIVSKFAPRMKRVYDQMPEPKF 125 Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 V+SMGSC GG + Y+V++G + ++PVDI+VPGCPP EALIYG+ LQ++I Sbjct: 126 VVSMGSCTISGGPFQEGYNVIKGAEEVIPVDIHVPGCPPRPEALIYGVAKLQERI 180 >gi|300918548|ref|ZP_07135138.1| NADH dehydrogenase subunit B [Escherichia coli MS 115-1] gi|300414283|gb|EFJ97593.1| NADH dehydrogenase subunit B [Escherichia coli MS 115-1] Length = 220 Score = 207 bits (527), Expect = 6e-52, Method: Composition-based stats. Identities = 73/169 (43%), Positives = 108/169 (63%), Gaps = 3/169 (1%) Query: 14 QSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQAS 73 L++ + + E+ +K + ++ +V W R S+ FGL+CC VEM+ + Sbjct: 14 NDRYPLQRQEIVTDPLEQEV-NKNVFMGKLNDMVNWGRKNSIWPYNFGLSCCYVEMVTSF 72 Query: 74 MPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANG 132 +D+ RFG RASPRQ+D+M+VAGT KMA ++R+YDQM EP++VISMG+CAN Sbjct: 73 TAVHDVARFGAEVLRASPRQADLMVVAGTCFTKMAPVIQRLYDQMLEPKWVISMGACANS 132 Query: 133 GGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181 GG Y YSVV+G D+ +PVD+Y+PGCPP EA + ++LLQ+ I + Sbjct: 133 GGMY-DIYSVVQGVDKFIPVDVYIPGCPPRPEAYMQALMLLQESIGKER 180 >gi|158260365|dbj|BAF82360.1| unnamed protein product [Homo sapiens] Length = 206 Score = 207 bits (527), Expect = 6e-52, Method: Composition-based stats. Identities = 104/163 (63%), Positives = 120/163 (73%), Gaps = 4/163 (2%) Query: 6 VNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACC 65 V+Q + + S + + + + ++V +D LV WAR SL MTFGLACC Sbjct: 30 VHQSVATDGPSSTQPALPKARAVAPKPSSRGEYVVAKLDDLVNWARRSSLWPMTFGLACC 89 Query: 66 AVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVIS 125 AVEMM + PRYD++RFG RASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYV+S Sbjct: 90 AVEMMHMAAPRYDMDRFGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVVS 149 Query: 126 MGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPG----CPPTAE 164 MGSCANGGGYYHYSYSVVRGCDRIVPVDIY+PG PPT E Sbjct: 150 MGSCANGGGYYHYSYSVVRGCDRIVPVDIYIPGRAGTAPPTRE 192 >gi|289769797|ref|ZP_06529175.1| NADH dehydrogenase subunit NuoB2 [Streptomyces lividans TK24] gi|289699996|gb|EFD67425.1| NADH dehydrogenase subunit NuoB2 [Streptomyces lividans TK24] Length = 219 Score = 207 bits (527), Expect = 6e-52, Method: Composition-based stats. Identities = 78/136 (57%), Positives = 102/136 (75%), Gaps = 1/136 (0%) Query: 46 LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR-ASPRQSDVMIVAGTLTN 104 ++ W R SL FGLACCA+E + ASM R+D R G P PRQ+D+M+V+GT+T+ Sbjct: 23 VLNWGRRYSLWVFNFGLACCAIEFIAASMARHDFIRLGVIPFAPGPRQADLMVVSGTVTD 82 Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164 KMA A++R+Y+QMPEP+YVIS G+C+N GG Y SYSV +G D+I+PVD+YVPGCPP E Sbjct: 83 KMAPAVKRLYEQMPEPKYVISFGACSNCGGPYWDSYSVTKGVDQIIPVDVYVPGCPPRPE 142 Query: 165 ALIYGILLLQKKIRRV 180 AL+ GIL LQ+KI R Sbjct: 143 ALLQGILKLQEKIARE 158 >gi|300175569|emb|CBK20880.2| subunit NuoB (NDUFS7) [Blastocystis hominis] Length = 220 Score = 207 bits (527), Expect = 6e-52, Method: Composition-based stats. Identities = 92/143 (64%), Positives = 117/143 (81%) Query: 40 VTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVA 99 VT+VD+++ + R GS+ TFGLACCA+EM+ AS R+D ER G PRA+PRQ+D+MIV+ Sbjct: 71 VTTVDKVIGYCRAGSVFPQTFGLACCAMEMIDASSARFDFERLGMIPRATPRQADLMIVS 130 Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGC 159 GT+TNKMA A+RR+YDQM EPRYVISMGSCAN GGYY YSY+VVRG DR+ PVD YVPGC Sbjct: 131 GTVTNKMAPAIRRLYDQMSEPRYVISMGSCANSGGYYAYSYNVVRGVDRLFPVDYYVPGC 190 Query: 160 PPTAEALIYGILLLQKKIRRVGN 182 PPTA+ L+Y IL++ KK+++ Sbjct: 191 PPTADGLLYAILMVMKKLKQQKT 213 >gi|21672438|ref|NP_660505.1| NADH dehydrogenase subunit B [Buchnera aphidicola str. Sg (Schizaphis graminum)] gi|25008859|sp|Q8K9Y6|NUOB_BUCAP RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|21623050|gb|AAM67716.1| NADH dehydrogenase I chain B [Buchnera aphidicola str. Sg (Schizaphis graminum)] Length = 223 Score = 207 bits (527), Expect = 6e-52, Method: Composition-based stats. Identities = 79/180 (43%), Positives = 107/180 (59%), Gaps = 2/180 (1%) Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62 LT +K + + + + G + + ++V W R SL FGL Sbjct: 5 LTRAERKSQRHYPNETTQSTIDPIEGYLKKNILMGKVTKLLHKIVNWGRKNSLWPYNFGL 64 Query: 63 ACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPR 121 +CC VEM+ A +D+ RFG RASPRQ+DVM++AGT KMA ++R+YDQM EP+ Sbjct: 65 SCCYVEMVTAFTSVHDVARFGSEVLRASPRQADVMVIAGTPFIKMAPVIQRLYDQMLEPK 124 Query: 122 YVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181 +VISMG+CAN GG Y YSVV+G D+ +PVDIY+PGCPP EA I+ + LLQK I Sbjct: 125 WVISMGACANSGGMY-DIYSVVQGVDKFLPVDIYIPGCPPRPEAYIHALTLLQKTINEER 183 >gi|300711699|ref|YP_003737513.1| NADH dehydrogenase-like complex subunit B [Halalkalicoccus jeotgali B3] gi|299125382|gb|ADJ15721.1| NADH dehydrogenase-like complex subunit B [Halalkalicoccus jeotgali B3] Length = 233 Score = 207 bits (527), Expect = 6e-52, Method: Composition-based stats. Identities = 73/177 (41%), Positives = 117/177 (66%), Gaps = 1/177 (0%) Query: 2 GLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFG 61 + N + + + + + + SR+ F++T D+ + WAR S+ + FG Sbjct: 8 SIAESNDAMTATREARMGDVDNRFNSRLREAFGSSPFILTKFDKFLNWARGSSMFMLQFG 67 Query: 62 LACCAVEMMQASMPRYDLERFGF-APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 +ACC++EMM ++DL+RFG PRASPRQ+D +I+ GT+ +K A ++RVYDQM EP Sbjct: 68 IACCSLEMMHTYAVKHDLDRFGSGVPRASPRQADTIIIPGTIVSKFAPRMKRVYDQMAEP 127 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 ++V++MGSCA GG + Y+V++G + ++PVDI+VPGCPP EAL+YG++ LQ++I Sbjct: 128 KFVVNMGSCAISGGPFQEGYNVIKGAEEVIPVDIHVPGCPPRPEALVYGVVKLQERI 184 >gi|312200066|ref|YP_004020127.1| NADH-quinone oxidoreductase B subunit [Frankia sp. EuI1c] gi|311231402|gb|ADP84257.1| NADH-quinone oxidoreductase, B subunit [Frankia sp. EuI1c] Length = 276 Score = 207 bits (527), Expect = 6e-52, Method: Composition-based stats. Identities = 79/149 (53%), Positives = 106/149 (71%), Gaps = 2/149 (1%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89 E G L+ SV++L R SL +TFGLACCA+EMM RYDL RFG RAS Sbjct: 4 EEKLPSGVLLASVEKLAGMGRKSSLWPVTFGLACCAIEMMGTGAARYDLARFGMEVFRAS 63 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQ+D+MIVAG ++ KMA LR++YDQMPEP++V+SMG CA+ GG ++ Y++V+G D I Sbjct: 64 PRQADLMIVAGRVSQKMAPVLRQIYDQMPEPKWVLSMGVCASSGGMFNN-YAIVQGVDHI 122 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIR 178 VPVD+Y+PGCPP E L+ I+ + +KI+ Sbjct: 123 VPVDMYLPGCPPRPEMLMDAIMKIHRKIQ 151 >gi|292655139|ref|YP_003535036.1| NADH dehydrogenase-like complex subunit B [Haloferax volcanii DS2] gi|291372435|gb|ADE04662.1| NADH dehydrogenase-like complex subunit B [Haloferax volcanii DS2] Length = 233 Score = 207 bits (527), Expect = 7e-52, Method: Composition-based stats. Identities = 75/176 (42%), Positives = 112/176 (63%), Gaps = 1/176 (0%) Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62 +T Q + + D S++ F++T D+ + W R S+ + FG+ Sbjct: 9 VTDDTQVQTETRDARMAGADDRFNSKLREAFGSSPFILTKFDKFMNWVRGSSMFMLQFGI 68 Query: 63 ACCAVEMMQASMPRYDLERFGF-APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPR 121 ACC++EMM ++DL+RF PRASPRQ+DV+IV GT+ +K A ++RVYDQMPEP+ Sbjct: 69 ACCSIEMMHTYSVKHDLDRFAAGVPRASPRQADVIIVPGTIVSKFAPRMKRVYDQMPEPK 128 Query: 122 YVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 +V+ MGSC GG + Y+V++G + ++PVDI++PGCPP EALIYGI LQ++I Sbjct: 129 FVVGMGSCTISGGPFQEGYNVIKGAEEVIPVDIHIPGCPPRPEALIYGIAKLQERI 184 >gi|289751824|ref|ZP_06511202.1| LOW QUALITY PROTEIN: NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis T92] gi|289692411|gb|EFD59840.1| LOW QUALITY PROTEIN: NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis T92] Length = 185 Score = 207 bits (527), Expect = 7e-52, Method: Composition-based stats. Identities = 74/151 (49%), Positives = 110/151 (72%), Gaps = 2/151 (1%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89 E G L+++V+++ + R SL TFGLACCA+EMM + PR+D+ RFG A+ Sbjct: 4 EEQLPGGILLSTVEKVAGYVRKNSLWPATFGLACCAIEMMATAGPRFDIARFGMERFSAT 63 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQ+D+MIVAG ++ KMA LR++YDQM EP++V++MG CA+ GG ++ Y++V+G D + Sbjct: 64 PRQADLMIVAGRVSQKMAPVLRQIYDQMAEPKWVLAMGVCASSGGMFNN-YAIVQGVDHV 122 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 VPVDIY+PGCPP E L++ IL L +KI+++ Sbjct: 123 VPVDIYLPGCPPRPEMLLHAILKLHEKIQQM 153 >gi|77164635|ref|YP_343160.1| NADH dehydrogenase subunit B [Nitrosococcus oceani ATCC 19707] gi|254434174|ref|ZP_05047682.1| NADH-quinone oxidoreductase, B subunit subfamily, putative [Nitrosococcus oceani AFC27] gi|123594559|sp|Q3JC16|NUOB1_NITOC RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName: Full=NADH dehydrogenase I subunit B 1; AltName: Full=NDH-1 subunit B 1 gi|76882949|gb|ABA57630.1| NADH dehydrogenase subunit B [Nitrosococcus oceani ATCC 19707] gi|207090507|gb|EDZ67778.1| NADH-quinone oxidoreductase, B subunit subfamily, putative [Nitrosococcus oceani AFC27] Length = 212 Score = 207 bits (527), Expect = 7e-52, Method: Composition-based stats. Identities = 77/174 (44%), Positives = 113/174 (64%), Gaps = 6/174 (3%) Query: 9 KIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVE 68 ++ Q++ S+E+ F + + L + LV W R SL FGL+CC VE Sbjct: 4 RLSKPQAATSIEQSKGSF----EDAIRRNLLFAQLQDLVAWGRKNSLWPYNFGLSCCYVE 59 Query: 69 MMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMG 127 M+ + +YD+ RFG RA+PR++D+M+++GT+ KMA ++R+Y+QM EPR+VISMG Sbjct: 60 MVTSFTSKYDIARFGAEVIRATPREADLMVISGTVFIKMAPVIKRLYEQMMEPRWVISMG 119 Query: 128 SCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181 SCAN GG Y YSVV+G D+ +PVD+YVPGCPP +A + G+LLLQ+ I + Sbjct: 120 SCANSGGMY-DIYSVVQGVDKFLPVDVYVPGCPPRPDAFLEGLLLLQEAIGKEQ 172 >gi|15610282|ref|NP_217662.1| NADH dehydrogenase subunit B [Mycobacterium tuberculosis H37Rv] gi|15842722|ref|NP_337759.1| NADH dehydrogenase subunit B [Mycobacterium tuberculosis CDC1551] gi|31794322|ref|NP_856815.1| NADH dehydrogenase subunit B [Mycobacterium bovis AF2122/97] gi|121639029|ref|YP_979253.1| NADH dehydrogenase subunit B [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148663001|ref|YP_001284524.1| NADH dehydrogenase subunit B [Mycobacterium tuberculosis H37Ra] gi|148824340|ref|YP_001289094.1| NADH dehydrogenase subunit B [Mycobacterium tuberculosis F11] gi|167970182|ref|ZP_02552459.1| NADH dehydrogenase subunit B [Mycobacterium tuberculosis H37Ra] gi|215405144|ref|ZP_03417325.1| NADH dehydrogenase subunit B [Mycobacterium tuberculosis 02_1987] gi|215432105|ref|ZP_03430024.1| NADH dehydrogenase subunit B [Mycobacterium tuberculosis EAS054] gi|215447436|ref|ZP_03434188.1| NADH dehydrogenase subunit B [Mycobacterium tuberculosis T85] gi|218754926|ref|ZP_03533722.1| NADH dehydrogenase subunit B [Mycobacterium tuberculosis GM 1503] gi|219559192|ref|ZP_03538268.1| NADH dehydrogenase subunit B [Mycobacterium tuberculosis T17] gi|224991521|ref|YP_002646210.1| NADH dehydrogenase subunit B [Mycobacterium bovis BCG str. Tokyo 172] gi|253800180|ref|YP_003033181.1| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis KZN 1435] gi|254233766|ref|ZP_04927091.1| NADH dehydrogenase I (chain B) nuoB (NADH-ubiquinone oxidoreductase chain B) [Mycobacterium tuberculosis C] gi|254365771|ref|ZP_04981816.1| NADH dehydrogenase I (chain B) nuoB (NADH-ubiquinone oxidoreductase chain B) [Mycobacterium tuberculosis str. Haarlem] gi|254552237|ref|ZP_05142684.1| NADH dehydrogenase subunit B [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260188187|ref|ZP_05765661.1| NADH dehydrogenase subunit B [Mycobacterium tuberculosis CPHL_A] gi|260202292|ref|ZP_05769783.1| NADH dehydrogenase subunit B [Mycobacterium tuberculosis T46] gi|260206485|ref|ZP_05773976.1| NADH dehydrogenase subunit B [Mycobacterium tuberculosis K85] gi|289444710|ref|ZP_06434454.1| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis T46] gi|289448826|ref|ZP_06438570.1| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis CPHL_A] gi|289555419|ref|ZP_06444629.1| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis KZN 605] gi|289571357|ref|ZP_06451584.1| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis T17] gi|289575858|ref|ZP_06456085.1| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis K85] gi|289746955|ref|ZP_06506333.1| NADH dehydrogenase subunit beta [Mycobacterium tuberculosis 02_1987] gi|289755265|ref|ZP_06514643.1| NADH dehydrogenase subunit B [Mycobacterium tuberculosis EAS054] gi|289759276|ref|ZP_06518654.1| NADH dehydrogenase subunit B [Mycobacterium tuberculosis T85] gi|289763329|ref|ZP_06522707.1| NADH dehydrogenase I (chain B) nuoB (NADH-ubiquinone oxidoreductase chain B) [Mycobacterium tuberculosis GM 1503] gi|294993125|ref|ZP_06798816.1| NADH dehydrogenase subunit B [Mycobacterium tuberculosis 210] gi|297635789|ref|ZP_06953569.1| NADH dehydrogenase subunit B [Mycobacterium tuberculosis KZN 4207] gi|297732786|ref|ZP_06961904.1| NADH dehydrogenase subunit B [Mycobacterium tuberculosis KZN R506] gi|306794900|ref|ZP_07433202.1| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis SUMu005] gi|306973581|ref|ZP_07486242.1| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis SUMu010] gi|307085892|ref|ZP_07495005.1| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis SUMu012] gi|313660119|ref|ZP_07816999.1| NADH dehydrogenase subunit B [Mycobacterium tuberculosis KZN V2475] gi|54037922|sp|P65576|NUOB_MYCBO RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|54041673|sp|P65575|NUOB_MYCTU RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|238065176|sp|A1KNE2|NUOB_MYCBP RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|238065181|sp|A5U7G2|NUOB_MYCTA RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|254767796|sp|C1AGR3|NUOB_MYCBT RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|1781222|emb|CAB06270.1| PROBABLE NADH DEHYDROGENASE I (CHAIN B) NUOB (NADH-UBIQUINONE OXIDOREDUCTASE CHAIN B) [Mycobacterium tuberculosis H37Rv] gi|13883044|gb|AAK47573.1| NADH dehydrogenase I, B subunit [Mycobacterium tuberculosis CDC1551] gi|31619918|emb|CAD95262.1| PROBABLE NADH DEHYDROGENASE I (CHAIN B) NUOB (NADH-UBIQUINONE OXIDOREDUCTASE CHAIN B) [Mycobacterium bovis AF2122/97] gi|121494677|emb|CAL73158.1| Probable NADH dehydrogenase I (chain B) nuoB [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|124599295|gb|EAY58399.1| NADH dehydrogenase I (chain B) nuoB (NADH-ubiquinone oxidoreductase chain B) [Mycobacterium tuberculosis C] gi|134151284|gb|EBA43329.1| NADH dehydrogenase I (chain B) nuoB (NADH-ubiquinone oxidoreductase chain B) [Mycobacterium tuberculosis str. Haarlem] gi|148507153|gb|ABQ74962.1| NADH dehydrogenase subunit beta [Mycobacterium tuberculosis H37Ra] gi|148722867|gb|ABR07492.1| NADH dehydrogenase I chain B nuoB (NADH-ubiquinone oxidoreductase chain B) [Mycobacterium tuberculosis F11] gi|224774636|dbj|BAH27442.1| NADH dehydrogenase subunit B [Mycobacterium bovis BCG str. Tokyo 172] gi|253321683|gb|ACT26286.1| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis KZN 1435] gi|289417629|gb|EFD14869.1| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis T46] gi|289421784|gb|EFD18985.1| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis CPHL_A] gi|289440051|gb|EFD22544.1| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis KZN 605] gi|289540289|gb|EFD44867.1| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis K85] gi|289545111|gb|EFD48759.1| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis T17] gi|289687483|gb|EFD54971.1| NADH dehydrogenase subunit beta [Mycobacterium tuberculosis 02_1987] gi|289695852|gb|EFD63281.1| NADH dehydrogenase subunit B [Mycobacterium tuberculosis EAS054] gi|289710835|gb|EFD74851.1| NADH dehydrogenase I (chain B) nuoB (NADH-ubiquinone oxidoreductase chain B) [Mycobacterium tuberculosis GM 1503] gi|289714840|gb|EFD78852.1| NADH dehydrogenase subunit B [Mycobacterium tuberculosis T85] gi|308336686|gb|EFP25537.1| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis SUMu005] gi|308357065|gb|EFP45916.1| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis SUMu010] gi|308364627|gb|EFP53478.1| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis SUMu012] gi|323718234|gb|EGB27414.1| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis CDC1551A] gi|326902630|gb|EGE49563.1| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis W-148] gi|328459917|gb|AEB05340.1| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis KZN 4207] Length = 184 Score = 207 bits (527), Expect = 7e-52, Method: Composition-based stats. Identities = 74/151 (49%), Positives = 110/151 (72%), Gaps = 2/151 (1%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89 E G L+++V+++ + R SL TFGLACCA+EMM + PR+D+ RFG A+ Sbjct: 4 EEQLPGGILLSTVEKVAGYVRKNSLWPATFGLACCAIEMMATAGPRFDIARFGMERFSAT 63 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQ+D+MIVAG ++ KMA LR++YDQM EP++V++MG CA+ GG ++ Y++V+G D + Sbjct: 64 PRQADLMIVAGRVSQKMAPVLRQIYDQMAEPKWVLAMGVCASSGGMFNN-YAIVQGVDHV 122 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 VPVDIY+PGCPP E L++ IL L +KI+++ Sbjct: 123 VPVDIYLPGCPPRPEMLLHAILKLHEKIQQM 153 >gi|294140414|ref|YP_003556392.1| NADH dehydrogenase I subunit B [Shewanella violacea DSS12] gi|293326883|dbj|BAJ01614.1| NADH dehydrogenase I, B subunit [Shewanella violacea DSS12] Length = 219 Score = 207 bits (526), Expect = 7e-52, Method: Composition-based stats. Identities = 76/149 (51%), Positives = 107/149 (71%), Gaps = 2/149 (1%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RAS 89 E+ K LVT ++ LV W R+ SL FGL+CC VEM + R+D+ RFG RA+ Sbjct: 25 QEVVEKNLLVTRLEDLVAWGRSNSLWPFNFGLSCCYVEMATSFTSRHDIARFGSEVIRAT 84 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PR++D+++++GT+ KMA ++ +YDQM EP++VISMGSCAN GG Y YSVV+G D+ Sbjct: 85 PREADLIVISGTVFLKMAPVIKHLYDQMLEPKWVISMGSCANSGGMY-DVYSVVQGADKF 143 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIR 178 +P+D+YVPGCPP EAL+YG+ LLQ+ I+ Sbjct: 144 LPIDLYVPGCPPRPEALMYGLTLLQEAIK 172 >gi|27904647|ref|NP_777773.1| NADH dehydrogenase subunit B [Buchnera aphidicola str. Bp (Baizongia pistaciae)] gi|38372478|sp|Q89AU5|NUOB_BUCBP RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|27904044|gb|AAO26878.1| NADH dehydrogenase I chain B [Buchnera aphidicola str. Bp (Baizongia pistaciae)] Length = 222 Score = 207 bits (526), Expect = 7e-52, Method: Composition-based stats. Identities = 84/183 (45%), Positives = 110/183 (60%), Gaps = 7/183 (3%) Query: 3 LTTVNQKIISGQSSCSLEK---VDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMT 59 LT VN I + EK V + + G L + LV W R SL Sbjct: 5 LTRVN--ISDDDQNYPREKKIQVSDPTKKYIQKNVFMGTLSKVLHNLVNWGRKNSLWPYN 62 Query: 60 FGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMP 118 FGL+CC VEM+ + +D+ RFG RASPRQ+D M++AGT KM ++R+YDQM Sbjct: 63 FGLSCCYVEMVTSFTSVHDISRFGSEVLRASPRQADFMVIAGTPFIKMVPIIQRLYDQML 122 Query: 119 EPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 EP++VISMGSCAN GG Y YSVV+G D+ +PVD+Y+PGCPP EA I+G++LLQK I Sbjct: 123 EPKWVISMGSCANSGGMY-DIYSVVQGVDKFLPVDVYIPGCPPRPEAYIHGLMLLQKSIS 181 Query: 179 RVG 181 + Sbjct: 182 KER 184 >gi|240169669|ref|ZP_04748328.1| NADH dehydrogenase subunit B [Mycobacterium kansasii ATCC 12478] Length = 184 Score = 207 bits (526), Expect = 7e-52, Method: Composition-based stats. Identities = 75/151 (49%), Positives = 109/151 (72%), Gaps = 2/151 (1%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89 E G L+++V+++ + R SL TFGLACCA+EMM + PR+DL RFG A+ Sbjct: 4 EEQLPGGILLSTVEKVAGYVRKNSLWPATFGLACCAIEMMATAGPRFDLARFGMERFSAT 63 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQ+D+MIVAG ++ KMA LR++YDQM EP++V++MG CA+ GG ++ Y++V+G D + Sbjct: 64 PRQADLMIVAGRVSQKMAPVLRQIYDQMAEPKWVLAMGVCASSGGMFNN-YAIVQGVDHV 122 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 VPVDIY+PGCPP E L++ IL L +KI+ + Sbjct: 123 VPVDIYLPGCPPRPEMLLHAILKLHEKIQEM 153 >gi|16761252|ref|NP_456869.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|16765654|ref|NP_461269.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|29141052|ref|NP_804394.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56412776|ref|YP_149851.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62180897|ref|YP_217314.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161502528|ref|YP_001569640.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|161612945|ref|YP_001586910.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167549674|ref|ZP_02343433.1| NADH-quinone oxidoreductase, B subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|167994675|ref|ZP_02575766.1| NADH-quinone oxidoreductase, B subunit [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168229696|ref|ZP_02654754.1| NADH-quinone oxidoreductase, B subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168237344|ref|ZP_02662402.1| NADH-quinone oxidoreductase, B subunit [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168242445|ref|ZP_02667377.1| NADH-quinone oxidoreductase, B subunit [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168261657|ref|ZP_02683630.1| NADH-quinone oxidoreductase, B subunit [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168465970|ref|ZP_02699840.1| NADH-quinone oxidoreductase, B subunit [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168817943|ref|ZP_02829943.1| NADH-quinone oxidoreductase, B subunit [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194443155|ref|YP_002041587.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194449154|ref|YP_002046380.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194472303|ref|ZP_03078287.1| NADH-quinone oxidoreductase, B subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194736744|ref|YP_002115396.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197249243|ref|YP_002147285.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197261696|ref|ZP_03161770.1| NADH-quinone oxidoreductase, B subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197361710|ref|YP_002141346.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|198241862|ref|YP_002216397.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200386648|ref|ZP_03213260.1| NADH-quinone oxidoreductase, B subunit [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204928974|ref|ZP_03220117.1| NADH-quinone oxidoreductase, B subunit [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205353442|ref|YP_002227243.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207857745|ref|YP_002244396.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|213052942|ref|ZP_03345820.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213420337|ref|ZP_03353403.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] gi|213427012|ref|ZP_03359762.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213581020|ref|ZP_03362846.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213610191|ref|ZP_03370017.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|213647303|ref|ZP_03377356.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|224583187|ref|YP_002636985.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|238912394|ref|ZP_04656231.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|289827447|ref|ZP_06546059.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|75482044|sp|Q57M29|NUOB_SALCH RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|81416296|sp|Q7CQ50|NUOB_SALTY RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|81599848|sp|Q5PN54|NUOB_SALPA RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|81628072|sp|Q8XGN7|NUOB_SALTI RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|238065204|sp|B5EZK8|NUOB_SALA4 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|238065205|sp|A9MJ98|NUOB_SALAR RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|238065206|sp|B5FPG8|NUOB_SALDC RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|238065207|sp|B5R308|NUOB_SALEP RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|238065208|sp|B5RCF2|NUOB_SALG2 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|238065209|sp|B4TBJ3|NUOB_SALHS RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|238065210|sp|B4SYZ8|NUOB_SALNS RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|238065211|sp|A9N581|NUOB_SALPB RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|238065212|sp|B5BCL9|NUOB_SALPK RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|238065213|sp|B4TPK9|NUOB_SALSV RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|254767798|sp|C0Q040|NUOB_SALPC RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|25299003|pir||AE0797 NADH2 dehydrogenase (ubiquinone) (EC 1.6.5.3) - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16420868|gb|AAL21228.1| NADH dehydrogenase I chain B [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|16503551|emb|CAD07559.1| NADH dehydrogenase I chain B [Salmonella enterica subsp. enterica serovar Typhi] gi|29136678|gb|AAO68243.1| NADH dehydrogenase I chain B [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56127033|gb|AAV76539.1| NADH dehydrogenase I chain B [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62128530|gb|AAX66233.1| NADH dehydrogenase I chain B [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|160863875|gb|ABX20498.1| hypothetical protein SARI_00572 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] gi|161362309|gb|ABX66077.1| hypothetical protein SPAB_00651 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194401818|gb|ACF62040.1| NADH-quinone oxidoreductase, B subunit [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194407458|gb|ACF67677.1| NADH-quinone oxidoreductase, B subunit [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194458667|gb|EDX47506.1| NADH-quinone oxidoreductase, B subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194712246|gb|ACF91467.1| NADH-quinone oxidoreductase, B subunit [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195631416|gb|EDX49976.1| NADH-quinone oxidoreductase, B subunit [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197093186|emb|CAR58630.1| NADH dehydrogenase I chain B [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197212946|gb|ACH50343.1| NADH-quinone oxidoreductase, B subunit [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197239951|gb|EDY22571.1| NADH-quinone oxidoreductase, B subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197289718|gb|EDY29081.1| NADH-quinone oxidoreductase, B subunit [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|197936378|gb|ACH73711.1| NADH-quinone oxidoreductase, B subunit [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199603746|gb|EDZ02291.1| NADH-quinone oxidoreductase, B subunit [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204321518|gb|EDZ06717.1| NADH-quinone oxidoreductase, B subunit [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205273223|emb|CAR38186.1| NADH dehydrogenase I chain B [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205325363|gb|EDZ13202.1| NADH-quinone oxidoreductase, B subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205327503|gb|EDZ14267.1| NADH-quinone oxidoreductase, B subunit [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205335598|gb|EDZ22362.1| NADH-quinone oxidoreductase, B subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205338322|gb|EDZ25086.1| NADH-quinone oxidoreductase, B subunit [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205345026|gb|EDZ31790.1| NADH-quinone oxidoreductase, B subunit [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205349478|gb|EDZ36109.1| NADH-quinone oxidoreductase, B subunit [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206709548|emb|CAR33893.1| NADH dehydrogenase I chain B [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224467714|gb|ACN45544.1| NADH dehydrogenase beta subunit [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|261247533|emb|CBG25360.1| NADH dehydrogenase I chain B [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267994422|gb|ACY89307.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301158885|emb|CBW18398.1| NADH dehydrogenase I chain B [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312913318|dbj|BAJ37292.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320086761|emb|CBY96533.1| NADH dehydrogenase I chain B [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321222972|gb|EFX48043.1| NADH-ubiquinone oxidoreductase chain B [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322617073|gb|EFY13979.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322617621|gb|EFY14520.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322624749|gb|EFY21578.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322630298|gb|EFY27068.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322634479|gb|EFY31212.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322639189|gb|EFY35881.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322640052|gb|EFY36719.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322645727|gb|EFY42251.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322651503|gb|EFY47878.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322656062|gb|EFY52361.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322659415|gb|EFY55662.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322665875|gb|EFY62058.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322669885|gb|EFY66026.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322673871|gb|EFY69968.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322678629|gb|EFY74685.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322683575|gb|EFY79589.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322687651|gb|EFY83621.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|322715376|gb|EFZ06947.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323130658|gb|ADX18088.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|323193515|gb|EFZ78720.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323198420|gb|EFZ83522.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323201934|gb|EFZ86996.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323208528|gb|EFZ93467.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323209763|gb|EFZ94687.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323218299|gb|EGA03009.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323222944|gb|EGA07293.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323227379|gb|EGA11544.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323232294|gb|EGA16397.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323235672|gb|EGA19756.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323241167|gb|EGA25203.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323244909|gb|EGA28911.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323250028|gb|EGA33922.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323254449|gb|EGA38264.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323254951|gb|EGA38742.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323260331|gb|EGA43950.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323268093|gb|EGA51570.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323270814|gb|EGA54252.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|326624148|gb|EGE30493.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326628534|gb|EGE34877.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] gi|332989260|gb|AEF08243.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 220 Score = 207 bits (526), Expect = 7e-52, Method: Composition-based stats. Identities = 74/169 (43%), Positives = 107/169 (63%), Gaps = 3/169 (1%) Query: 14 QSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQAS 73 L+K + + E+ +K + + +V W R S+ FGL+CC VEM+ + Sbjct: 14 NDRYPLQKQEIVTDPLEQEV-NKNVFMGKLHDMVNWGRKNSIWPYNFGLSCCYVEMVTSF 72 Query: 74 MPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANG 132 +D+ RFG RASPRQ+D+M+VAGT KMA ++R+YDQM EP++VISMG+CAN Sbjct: 73 TAVHDVARFGAEVLRASPRQADLMVVAGTCFTKMAPVIQRLYDQMLEPKWVISMGACANS 132 Query: 133 GGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181 GG Y YSVV+G D+ +PVD+Y+PGCPP EA + ++LLQ+ I + Sbjct: 133 GGMY-DIYSVVQGVDKFIPVDVYIPGCPPRPEAYMQALMLLQESIGKER 180 >gi|297201676|ref|ZP_06919073.1| NADH dehydrogenase subunit NuoB2 [Streptomyces sviceus ATCC 29083] gi|297147941|gb|EDY54985.2| NADH dehydrogenase subunit NuoB2 [Streptomyces sviceus ATCC 29083] Length = 234 Score = 207 bits (526), Expect = 8e-52, Method: Composition-based stats. Identities = 78/136 (57%), Positives = 102/136 (75%), Gaps = 1/136 (0%) Query: 46 LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR-ASPRQSDVMIVAGTLTN 104 ++ W R SL FGLACCA+E + ASM R+D R G P PRQ+D+M+V+GT+T+ Sbjct: 45 ILNWGRRYSLWVFNFGLACCAIEFIAASMARHDFIRLGVIPFAPGPRQADLMVVSGTVTD 104 Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164 KMA A++R+Y+QMPEP+YVIS G+C+N GG Y SYSV +G D+I+PVD+YVPGCPP E Sbjct: 105 KMAPAVKRLYEQMPEPKYVISFGACSNCGGPYWDSYSVTKGVDQIIPVDVYVPGCPPRPE 164 Query: 165 ALIYGILLLQKKIRRV 180 AL+ GIL LQ+KI R Sbjct: 165 ALLQGILKLQEKIARE 180 >gi|326772151|ref|ZP_08231436.1| NADH dehydrogenase I, B subunit [Actinomyces viscosus C505] gi|326638284|gb|EGE39185.1| NADH dehydrogenase I, B subunit [Actinomyces viscosus C505] Length = 204 Score = 207 bits (526), Expect = 8e-52, Method: Composition-based stats. Identities = 81/160 (50%), Positives = 119/160 (74%), Gaps = 2/160 (1%) Query: 21 KVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLE 80 K + ++ ++E+ + GFL+T+V++L A+ S+ +T GLACCA+EMM A PR+D+ Sbjct: 14 KRNDPYAAAAAEVDNPGFLLTTVEKLAGLAQARSMWPVTMGLACCAIEMMAAGTPRFDMA 73 Query: 81 RFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS 139 RFG+ RASPR +DVMIV+G +++KMA +R VYD MPEP++VISMG+CA+ GG ++ Sbjct: 74 RFGWEVFRASPRHADVMIVSGRVSHKMAPIVRNVYDSMPEPKWVISMGACASSGGIFNN- 132 Query: 140 YSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179 Y+VV+GCD IVPVDIY+PGCPP E L+ +L L ++I + Sbjct: 133 YAVVQGCDHIVPVDIYLPGCPPRPEMLLNAMLELTRQIEK 172 >gi|157144782|ref|YP_001452101.1| NADH dehydrogenase subunit B [Citrobacter koseri ATCC BAA-895] gi|238055287|sp|A8ADV2|NUOB_CITK8 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|157081987|gb|ABV11665.1| hypothetical protein CKO_00509 [Citrobacter koseri ATCC BAA-895] Length = 224 Score = 207 bits (526), Expect = 8e-52, Method: Composition-based stats. Identities = 76/172 (44%), Positives = 107/172 (62%), Gaps = 5/172 (2%) Query: 14 QSSCSLEKVDADFSRISSEITHK---GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMM 70 L+K + + EI G L ++ +V W R S+ FGL+CC VEM+ Sbjct: 14 NDRYPLQKQEIVTDPLEQEINKSVYMGKLEHALHDMVNWGRKNSIWPYNFGLSCCYVEMV 73 Query: 71 QASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSC 129 + +D+ RFG RASPRQ+D+M+VAGT KMA ++R+YDQM EP++VISMG+C Sbjct: 74 TSFTAVHDVARFGAEVLRASPRQADLMVVAGTCFTKMAPVIQRLYDQMLEPKWVISMGAC 133 Query: 130 ANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181 AN GG Y YSVV+G D+ +PVD+Y+PGCPP EA + ++LLQ+ I + Sbjct: 134 ANSGGMY-DIYSVVQGVDKFIPVDVYIPGCPPRPEAYMQALMLLQESIGKER 184 >gi|54024635|ref|YP_118877.1| NADH dehydrogenase subunit B [Nocardia farcinica IFM 10152] gi|81602742|sp|Q5YWC8|NUOB_NOCFA RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|54016143|dbj|BAD57513.1| putative NADH dehydrogenase I chain B [Nocardia farcinica IFM 10152] Length = 184 Score = 207 bits (526), Expect = 8e-52, Method: Composition-based stats. Identities = 78/151 (51%), Positives = 105/151 (69%), Gaps = 2/151 (1%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89 E GFL+++V+ + R GS+ TFGLACCA+EMM R+D+ RFG RAS Sbjct: 4 EEKLPSGFLLSTVESFAGYLRKGSVWPATFGLACCAIEMMATGAGRFDIARFGMEAFRAS 63 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQ+D+MIVAG ++ KMA LR+VYDQM EP++V++MG CA+ GG ++ Y+VV+G D + Sbjct: 64 PRQADLMIVAGRVSQKMAPVLRQVYDQMAEPKWVLAMGVCASSGGMFNN-YAVVQGVDHV 122 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 VPVDIY+PGCPP E L+ IL L KI+ Sbjct: 123 VPVDIYLPGCPPRPEMLLNAILALHDKIQHT 153 >gi|237732318|ref|ZP_04562799.1| trifunctional NADH dehydrogenase I subunit B/C/D [Citrobacter sp. 30_2] gi|283832283|ref|ZP_06352024.1| NADH dehydrogenase I subunit B [Citrobacter youngae ATCC 29220] gi|226907857|gb|EEH93775.1| trifunctional NADH dehydrogenase I subunit B/C/D [Citrobacter sp. 30_2] gi|291071927|gb|EFE10036.1| NADH dehydrogenase I subunit B [Citrobacter youngae ATCC 29220] Length = 220 Score = 207 bits (526), Expect = 9e-52, Method: Composition-based stats. Identities = 74/169 (43%), Positives = 106/169 (62%), Gaps = 3/169 (1%) Query: 14 QSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQAS 73 L+K + + E+ +K + + +V W R S+ FGL+CC VEM+ + Sbjct: 14 NDRYPLQKQEIVTDPLEQEV-NKNVFMGKLHDMVNWGRKNSIWPYNFGLSCCYVEMVTSF 72 Query: 74 MPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANG 132 +D+ RFG RASPRQ+D+M+VAGT KMA ++R+YDQM EP++VISMG+CAN Sbjct: 73 TAVHDVARFGAEVLRASPRQADLMVVAGTCFTKMAPVIQRLYDQMLEPKWVISMGACANS 132 Query: 133 GGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181 GG Y YSVV+G D+ +PVD+Y+PGCPP EA + ++LLQ I + Sbjct: 133 GGMY-DIYSVVQGVDKFIPVDVYIPGCPPRPEAYMQALMLLQDSIGKER 180 >gi|257459165|ref|ZP_05624284.1| NADH-quinone oxidoreductase, B subunit [Campylobacter gracilis RM3268] gi|257443550|gb|EEV18674.1| NADH-quinone oxidoreductase, B subunit [Campylobacter gracilis RM3268] Length = 169 Score = 206 bits (525), Expect = 9e-52, Method: Composition-based stats. Identities = 84/141 (59%), Positives = 110/141 (78%), Gaps = 1/141 (0%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 ++T+VD+L+ W R+ SL MT+GLACCA+EMM A R+D +RFG RAS +QSDVMI Sbjct: 16 VVLTTVDKLIAWGRSNSLWAMTYGLACCAIEMMAAGAGRFDFDRFGTIFRASAKQSDVMI 75 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 +AGTL+ K A RR+YD MPEP++VISMGSCAN GG ++ +Y+ V+GCDRIVPVDIY+P Sbjct: 76 IAGTLSKKHAEFTRRLYDAMPEPKWVISMGSCANTGGMFN-TYATVQGCDRIVPVDIYLP 134 Query: 158 GCPPTAEALIYGILLLQKKIR 178 GC P E L + +++LQKKIR Sbjct: 135 GCAPRPETLQFAMMVLQKKIR 155 >gi|92115246|ref|YP_575174.1| NADH dehydrogenase subunit B [Chromohalobacter salexigens DSM 3043] gi|122419105|sp|Q1QST3|NUOB_CHRSD RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|91798336|gb|ABE60475.1| NADH dehydrogenase subunit B [Chromohalobacter salexigens DSM 3043] Length = 226 Score = 206 bits (525), Expect = 9e-52, Method: Composition-based stats. Identities = 79/184 (42%), Positives = 111/184 (60%), Gaps = 7/184 (3%) Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQL----VTWARTGSLMWM 58 LT +Q+ +S L + ++ + ++ H+ ++ + V W R SL Sbjct: 5 LTRADQEPAPDGASYPLGRRESTSDPMQEQV-HRNVFTGKLEDVLNSTVNWGRKHSLWPY 63 Query: 59 TFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQM 117 FGL+CC VEM A +D+ RFG RASPRQ+D M++AGT KMA ++++YDQM Sbjct: 64 NFGLSCCYVEMTTAFTAPHDVARFGSEVIRASPRQADFMVIAGTCFIKMAPVIQQLYDQM 123 Query: 118 PEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 EP++VISMGSCAN GG Y YSVV+G D+ +PVD+YVPGCPP EA + G+ LLQ I Sbjct: 124 LEPKWVISMGSCANSGGMY-DIYSVVQGVDKFLPVDVYVPGCPPRPEAFLQGLQLLQDSI 182 Query: 178 RRVG 181 + Sbjct: 183 QEER 186 >gi|156351435|ref|XP_001622510.1| hypothetical protein NEMVEDRAFT_v1g220626 [Nematostella vectensis] gi|156209067|gb|EDO30410.1| predicted protein [Nematostella vectensis] Length = 133 Score = 206 bits (525), Expect = 9e-52, Method: Composition-based stats. Identities = 102/121 (84%), Positives = 113/121 (93%) Query: 58 MTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQM 117 MTFGLACCAVEMM + PRYD++RFG RASPRQ+DVMIVAGTLTNKMA ALR+VYDQM Sbjct: 1 MTFGLACCAVEMMHFAAPRYDMDRFGVVFRASPRQADVMIVAGTLTNKMAPALRKVYDQM 60 Query: 118 PEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 PEPR+VISMGSCANGGGYYHYSYSVVRGCDR++PVDIYVPGCPPTAEAL+YG+L LQKK+ Sbjct: 61 PEPRWVISMGSCANGGGYYHYSYSVVRGCDRVIPVDIYVPGCPPTAEALLYGVLQLQKKV 120 Query: 178 R 178 R Sbjct: 121 R 121 >gi|268591136|ref|ZP_06125357.1| NADH dehydrogenase I subunit B [Providencia rettgeri DSM 1131] gi|291313438|gb|EFE53891.1| NADH dehydrogenase I subunit B [Providencia rettgeri DSM 1131] Length = 224 Score = 206 bits (525), Expect = 1e-51, Method: Composition-based stats. Identities = 79/181 (43%), Positives = 111/181 (61%), Gaps = 3/181 (1%) Query: 3 LTTVNQKIISGQSSCSLEKVDAD-FSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFG 61 LT ++ + + +K+ D + + G L ++ +V W R SL FG Sbjct: 5 LTRIDPNGENDRYPLQTQKIVTDPLEQQVENSVYMGKLSHALHDVVNWGRKNSLWPYNFG 64 Query: 62 LACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 L+CC VEM+ + +D+ RFG RASPRQ+D M+VAGT KMA ++R+YDQM EP Sbjct: 65 LSCCYVEMVTSFTAVHDVARFGAEVLRASPRQADFMVVAGTCFTKMAPVIQRLYDQMLEP 124 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 ++VISMGSCAN GG Y YSVV+G D+ +PVD+Y+PGCPP EA + +LLLQ+ I + Sbjct: 125 KWVISMGSCANSGGMY-DIYSVVQGVDKFIPVDVYIPGCPPRPEAYMQALLLLQESIGKE 183 Query: 181 G 181 Sbjct: 184 R 184 >gi|152971215|ref|YP_001336324.1| NADH dehydrogenase subunit B [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|206576675|ref|YP_002237325.1| NADH-quinone oxidoreductase, B subunit [Klebsiella pneumoniae 342] gi|238895804|ref|YP_002920540.1| NADH dehydrogenase subunit B [Klebsiella pneumoniae NTUH-K2044] gi|262043327|ref|ZP_06016456.1| NADH dehydrogenase I subunit B [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|288934255|ref|YP_003438314.1| NADH-quinone oxidoreductase subunit beta [Klebsiella variicola At-22] gi|290508458|ref|ZP_06547829.1| NADH dehydrogenase I subunit B [Klebsiella sp. 1_1_55] gi|311278756|ref|YP_003940987.1| NADH-quinone oxidoreductase, B subunit [Enterobacter cloacae SCF1] gi|330003557|ref|ZP_08304672.1| NADH dehydrogenase I subunit B [Klebsiella sp. MS 92-3] gi|238065162|sp|B5XNV5|NUOB_KLEP3 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|238065163|sp|A6TBX3|NUOB_KLEP7 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|150956064|gb|ABR78094.1| NADH dehydrogenase beta subunit [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|206565733|gb|ACI07509.1| NADH-quinone oxidoreductase, B subunit [Klebsiella pneumoniae 342] gi|238548122|dbj|BAH64473.1| NADH dehydrogenase beta subunit [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|259039351|gb|EEW40493.1| NADH dehydrogenase I subunit B [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|288888984|gb|ADC57302.1| NADH-quinone oxidoreductase, B subunit [Klebsiella variicola At-22] gi|289777852|gb|EFD85849.1| NADH dehydrogenase I subunit B [Klebsiella sp. 1_1_55] gi|308747951|gb|ADO47703.1| NADH-quinone oxidoreductase, B subunit [Enterobacter cloacae SCF1] gi|328536897|gb|EGF63196.1| NADH dehydrogenase I subunit B [Klebsiella sp. MS 92-3] Length = 224 Score = 206 bits (525), Expect = 1e-51, Method: Composition-based stats. Identities = 75/172 (43%), Positives = 107/172 (62%), Gaps = 5/172 (2%) Query: 14 QSSCSLEKVDADFSRISSEITHK---GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMM 70 L+K + + E+ G L ++ +V W R S+ FGL+CC VEM+ Sbjct: 14 NDRYPLQKQEIVTDPLEQEVNKSVYMGKLEHALHDMVNWGRKNSIWPYNFGLSCCYVEMV 73 Query: 71 QASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSC 129 + +D+ RFG RASPRQ+D+M+VAGT KMA ++R+YDQM EP++VISMG+C Sbjct: 74 TSFTAVHDVARFGAEVLRASPRQADLMVVAGTCFTKMAPVIQRLYDQMLEPKWVISMGAC 133 Query: 130 ANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181 AN GG Y YSVV+G D+ +PVD+Y+PGCPP EA + ++LLQ+ I + Sbjct: 134 ANSGGMY-DIYSVVQGVDKFIPVDVYIPGCPPRPEAYMQALMLLQESIGKER 184 >gi|193787188|dbj|BAG52394.1| unnamed protein product [Homo sapiens] Length = 206 Score = 206 bits (525), Expect = 1e-51, Method: Composition-based stats. Identities = 104/163 (63%), Positives = 120/163 (73%), Gaps = 4/163 (2%) Query: 6 VNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACC 65 V+Q + + S + + + + ++V +D LV WAR SL MTFGLACC Sbjct: 30 VHQSVATDGPSSTQPALPKARAVAPKPSSRGEYVVAKLDDLVNWARRSSLWPMTFGLACC 89 Query: 66 AVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVIS 125 AVEMM + PRYD++RFG RASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYV+S Sbjct: 90 AVEMMHMAAPRYDMDRFGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVVS 149 Query: 126 MGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPG----CPPTAE 164 MGSCANGGGYYHYSYSVVRGCDRIVPVDIY+PG PPT E Sbjct: 150 MGSCANGGGYYHYSYSVVRGCDRIVPVDIYIPGRAGTAPPTRE 192 >gi|118617947|ref|YP_906279.1| NADH dehydrogenase subunit B [Mycobacterium ulcerans Agy99] gi|183981497|ref|YP_001849788.1| NADH dehydrogenase I (chain B) NuoB (NADH- ubiquinone oxidoreductase chain B) [Mycobacterium marinum M] gi|238065178|sp|B2HGE7|NUOB_MYCMM RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|238065182|sp|A0PR39|NUOB_MYCUA RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|118570057|gb|ABL04808.1| NADH dehydrogenase I (chain B) NuoB (NADH- ubiquinone oxidoreductase chain B) [Mycobacterium ulcerans Agy99] gi|183174823|gb|ACC39933.1| NADH dehydrogenase I (chain B) NuoB (NADH- ubiquinone oxidoreductase chain B) [Mycobacterium marinum M] Length = 184 Score = 206 bits (525), Expect = 1e-51, Method: Composition-based stats. Identities = 74/151 (49%), Positives = 109/151 (72%), Gaps = 2/151 (1%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89 E G L+++V+++ + R SL TFGLACCA+EMM + PR+D+ RFG A+ Sbjct: 4 EEQLPGGILLSTVEKVAGYVRKNSLWPATFGLACCAIEMMATAGPRFDIARFGMERFSAT 63 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQ+D+MIVAG ++ KMA LR++YDQM EP++V++MG CA+ GG ++ Y++V+G D + Sbjct: 64 PRQADLMIVAGRVSQKMAPVLRQIYDQMAEPKWVLAMGVCASSGGMFNN-YAIVQGVDHV 122 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 VPVDIY+PGCPP E L++ IL L +KI+ + Sbjct: 123 VPVDIYLPGCPPRPEMLLHAILKLHEKIQEM 153 >gi|269955278|ref|YP_003325067.1| NADH-quinone oxidoreductase subunit B [Xylanimonas cellulosilytica DSM 15894] gi|269303959|gb|ACZ29509.1| NADH-quinone oxidoreductase, B subunit [Xylanimonas cellulosilytica DSM 15894] Length = 183 Score = 206 bits (525), Expect = 1e-51, Method: Composition-based stats. Identities = 81/147 (55%), Positives = 107/147 (72%), Gaps = 2/147 (1%) Query: 32 EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASP 90 E GFL+T+++ L + R SL +TFGLACCA+EMM A R+DL RFG RASP Sbjct: 4 EEAPSGFLLTTIEDLAGYLRKASLWPVTFGLACCAIEMMAAGASRFDLSRFGMEVFRASP 63 Query: 91 RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150 RQ+D+MIVAG ++ KMA +R+VYDQM EP++V+SMG CA+ GG ++ Y++V+G D IV Sbjct: 64 RQADLMIVAGRVSQKMAPVVRQVYDQMSEPKWVLSMGVCASSGGMFNN-YAIVQGVDHIV 122 Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKI 177 PVDIY+PGCPP E LI IL L ++I Sbjct: 123 PVDIYLPGCPPRPEMLINAILALHQQI 149 >gi|163751847|ref|ZP_02159062.1| NADH dehydrogenase beta subunit [Shewanella benthica KT99] gi|161328263|gb|EDP99425.1| NADH dehydrogenase beta subunit [Shewanella benthica KT99] Length = 218 Score = 206 bits (524), Expect = 1e-51, Method: Composition-based stats. Identities = 75/149 (50%), Positives = 107/149 (71%), Gaps = 2/149 (1%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RAS 89 E+ K L+T ++ LV W R+ SL FGL+CC VEM + R+D+ RFG RA+ Sbjct: 24 QEVVEKNLLITRLEDLVAWGRSNSLWPFNFGLSCCYVEMATSFTSRHDIARFGSEVIRAT 83 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PR++D+++++GT+ KMA ++ +YDQM EP++VISMGSCAN GG Y YSVV+G D+ Sbjct: 84 PREADLIVISGTVFLKMAPVIKHLYDQMLEPKWVISMGSCANSGGMY-DVYSVVQGADKF 142 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIR 178 +P+D+YVPGCPP EAL+YG+ LLQ+ I+ Sbjct: 143 LPIDLYVPGCPPRPEALMYGLTLLQEAIK 171 >gi|284034168|ref|YP_003384099.1| NADH-quinone oxidoreductase subunit B [Kribbella flavida DSM 17836] gi|283813461|gb|ADB35300.1| NADH-quinone oxidoreductase, B subunit [Kribbella flavida DSM 17836] Length = 184 Score = 206 bits (524), Expect = 1e-51, Method: Composition-based stats. Identities = 75/150 (50%), Positives = 102/150 (68%), Gaps = 2/150 (1%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89 E G L+T+++ L + R SL TFGLACCA+EMM PRYD RFG RAS Sbjct: 4 EEQLPAGVLLTTIEGLSGYMRKASLWPATFGLACCAIEMMTTGAPRYDAARFGMEVFRAS 63 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQ+D+MIVAG ++ KMA LR++YDQMP P++V++MG CA+ GG ++ Y++V+G D + Sbjct: 64 PRQADLMIVAGRVSQKMAPVLRQIYDQMPNPKWVLAMGVCASSGGMFNN-YAIVQGVDHV 122 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRR 179 VPVD+Y+PGCPP E L+ L L I+ Sbjct: 123 VPVDMYLPGCPPRPEMLLDAFLKLHDDIQH 152 >gi|182436717|ref|YP_001824436.1| putative NADH dehydrogenase chain B [Streptomyces griseus subsp. griseus NBRC 13350] gi|238065043|sp|B1W4V9|NUOB2_STRGG RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName: Full=NADH dehydrogenase I subunit B 2; AltName: Full=NDH-1 subunit B 2 gi|178465233|dbj|BAG19753.1| putative NADH dehydrogenase chain B [Streptomyces griseus subsp. griseus NBRC 13350] Length = 235 Score = 206 bits (524), Expect = 1e-51, Method: Composition-based stats. Identities = 86/182 (47%), Positives = 113/182 (62%), Gaps = 4/182 (2%) Query: 1 MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVT-SVDQLVTWARTGSLMWMT 59 MGLT+ +S D + L + ++ W R SL Sbjct: 1 MGLTSRPTPASRQPASPP--PADPVLLPEPKRLGVLSRLAPEPMKVVLNWGRRYSLWVFN 58 Query: 60 FGLACCAVEMMQASMPRYDLERFGFAPR-ASPRQSDVMIVAGTLTNKMASALRRVYDQMP 118 FGLACCA+E + ASM R+D R G P PRQ+D+MIV+GT+T+KMA A++R+Y+QMP Sbjct: 59 FGLACCAIEFIAASMARHDFIRLGVIPFAPGPRQADLMIVSGTVTDKMAPAVKRLYEQMP 118 Query: 119 EPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 EP+YVIS G+C+N GG Y SYSV +G D+I+PVD+YVPGCPP EAL+ GIL LQ+KI Sbjct: 119 EPKYVISFGACSNCGGPYWDSYSVTKGVDQIIPVDVYVPGCPPRPEALLQGILKLQEKIA 178 Query: 179 RV 180 R Sbjct: 179 RE 180 >gi|215413013|ref|ZP_03421714.1| NADH dehydrogenase subunit B [Mycobacterium tuberculosis 94_M4241A] gi|298526620|ref|ZP_07014029.1| NADH dehydrogenase I, B subunit [Mycobacterium tuberculosis 94_M4241A] gi|298496414|gb|EFI31708.1| NADH dehydrogenase I, B subunit [Mycobacterium tuberculosis 94_M4241A] Length = 184 Score = 206 bits (524), Expect = 1e-51, Method: Composition-based stats. Identities = 74/151 (49%), Positives = 110/151 (72%), Gaps = 2/151 (1%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89 E G L+++V+++ + R SL TFGLACCA+EMM + PR+D+ RFG A+ Sbjct: 4 EEQLPGGILLSNVEKVAGYVRKNSLWPATFGLACCAIEMMATAGPRFDIARFGMERFSAT 63 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQ+D+MIVAG ++ KMA LR++YDQM EP++V++MG CA+ GG ++ Y++V+G D + Sbjct: 64 PRQADLMIVAGRVSQKMAPVLRQIYDQMAEPKWVLAMGVCASSGGMFNN-YAIVQGVDHV 122 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 VPVDIY+PGCPP E L++ IL L +KI+++ Sbjct: 123 VPVDIYLPGCPPRPEMLLHAILKLHEKIQQM 153 >gi|325067538|ref|ZP_08126211.1| NADH-quinone oxidoreductase, B subunit [Actinomyces oris K20] Length = 207 Score = 206 bits (524), Expect = 1e-51, Method: Composition-based stats. Identities = 81/160 (50%), Positives = 118/160 (73%), Gaps = 2/160 (1%) Query: 21 KVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLE 80 K + ++ ++E+ GFL+T+V++L A+ S+ +T GLACCA+EMM A PR+D+ Sbjct: 17 KRNDPYAAAAAEVDSPGFLLTTVEKLAGLAQARSMWPVTMGLACCAIEMMAAGTPRFDMA 76 Query: 81 RFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS 139 RFG+ RASPR +DVMIV+G +++KMA +R VYD MPEP++VISMG+CA+ GG ++ Sbjct: 77 RFGWEVFRASPRHADVMIVSGRVSHKMAPIVRNVYDSMPEPKWVISMGACASSGGIFNN- 135 Query: 140 YSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179 Y+VV+GCD IVPVDIY+PGCPP E L+ +L L ++I + Sbjct: 136 YAVVQGCDHIVPVDIYLPGCPPRPEMLLNAMLELTRQIEK 175 >gi|302553480|ref|ZP_07305822.1| NADH dehydrogenase subunit I B [Streptomyces viridochromogenes DSM 40736] gi|302471098|gb|EFL34191.1| NADH dehydrogenase subunit I B [Streptomyces viridochromogenes DSM 40736] Length = 206 Score = 206 bits (524), Expect = 1e-51, Method: Composition-based stats. Identities = 78/136 (57%), Positives = 102/136 (75%), Gaps = 1/136 (0%) Query: 46 LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR-ASPRQSDVMIVAGTLTN 104 ++ W R SL FGLACCA+E + ASM R+D R G P PRQ+D+M+V+GT+T+ Sbjct: 30 ILNWGRRYSLWVFNFGLACCAIEFIAASMARHDFIRLGVIPFAPGPRQADLMVVSGTVTD 89 Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164 KMA A++R+Y+QMPEP+YVIS G+C+N GG Y SYSV +G D+I+PVD+YVPGCPP E Sbjct: 90 KMAPAVKRLYEQMPEPKYVISFGACSNCGGPYWDSYSVTKGVDQIIPVDVYVPGCPPRPE 149 Query: 165 ALIYGILLLQKKIRRV 180 AL+ GIL LQ+KI R Sbjct: 150 ALLQGILKLQEKIARE 165 >gi|111022873|ref|YP_705845.1| NADH dehydrogenase subunit B [Rhodococcus jostii RHA1] gi|122955232|sp|Q0S449|NUOB_RHOSR RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|110822403|gb|ABG97687.1| probable NADH dehydrogenase subunit B [Rhodococcus jostii RHA1] Length = 184 Score = 206 bits (524), Expect = 1e-51, Method: Composition-based stats. Identities = 79/151 (52%), Positives = 110/151 (72%), Gaps = 2/151 (1%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89 E GFL+T+V+ L + R GSL +FGLACCA+EMM + R+D+ RFG RAS Sbjct: 4 EEKLPSGFLLTTVEGLAGYVRKGSLWPASFGLACCAIEMMATAGGRFDIARFGMEAFRAS 63 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQ+D+MIVAG ++ KMA LR++YDQM EP++V++MG CA+ GG ++ Y++V+G D I Sbjct: 64 PRQADLMIVAGRVSQKMAPVLRQIYDQMVEPKWVLAMGVCASSGGMFNN-YAIVQGVDHI 122 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 VPVDIY+PGCPP E L+ IL L +KI+++ Sbjct: 123 VPVDIYLPGCPPRPEMLLNAILTLHEKIQQM 153 >gi|118474832|ref|YP_891363.1| NADH-quinone oxidoreductase chain b [Campylobacter fetus subsp. fetus 82-40] gi|238055277|sp|A0RMD0|NUOB_CAMFF RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|118414058|gb|ABK82478.1| NADH-quinone oxidoreductase chain b [Campylobacter fetus subsp. fetus 82-40] Length = 168 Score = 206 bits (524), Expect = 1e-51, Method: Composition-based stats. Identities = 70/151 (46%), Positives = 100/151 (66%), Gaps = 2/151 (1%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RAS 89 + ++T +D L W R SL M FG ACCA+E M A ++DL RFG R S Sbjct: 4 ENLVQNDVVLTRLDALFNWGRKNSLWPMIFGTACCAIEFMSAVSSKHDLSRFGAEVMRFS 63 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQ+D+MI+AGT++ K A L+ +YDQM EP++V+SMG+CA GG ++ +Y+ ++G D+I Sbjct: 64 PRQADLMIIAGTISFKQAPILKEIYDQMCEPKWVVSMGACACSGG-FYDNYTTLQGIDQI 122 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 +PVD+Y+ GCPP EA+I IL +Q KI Sbjct: 123 IPVDVYISGCPPRPEAIIDAILAIQDKISNE 153 >gi|317051070|ref|YP_004112186.1| NADH-quinone oxidoreductase subunit B [Desulfurispirillum indicum S5] gi|316946154|gb|ADU65630.1| NADH-quinone oxidoreductase, B subunit [Desulfurispirillum indicum S5] Length = 183 Score = 206 bits (524), Expect = 1e-51, Method: Composition-based stats. Identities = 69/146 (47%), Positives = 105/146 (71%), Gaps = 2/146 (1%) Query: 36 KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSD 94 + T++D +V WAR SL MTFG ACCA+E M A+ ++DL RFG R SPRQ+D Sbjct: 13 DSVITTTMDAVVNWARQYSLWPMTFGTACCAIEFMSAAASQHDLSRFGAEVIRFSPRQAD 72 Query: 95 VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154 +++VAGT++ K A L+R+Y+QMP+P++VISMG+CA GG ++ +Y ++G D+++PVD Sbjct: 73 LLLVAGTISMKQAPVLKRIYEQMPDPKWVISMGACACSGG-FYDNYCTLQGIDQVIPVDA 131 Query: 155 YVPGCPPTAEALIYGILLLQKKIRRV 180 Y+ GCPP EA++ + L+QKK++ Sbjct: 132 YISGCPPRPEAILDALFLIQKKLKEE 157 >gi|226365381|ref|YP_002783164.1| NADH dehydrogenase subunit B [Rhodococcus opacus B4] gi|254767797|sp|C1AYM4|NUOB_RHOOB RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|226243871|dbj|BAH54219.1| NADH-quinone oxidoreductase chain B [Rhodococcus opacus B4] Length = 184 Score = 206 bits (524), Expect = 1e-51, Method: Composition-based stats. Identities = 79/151 (52%), Positives = 110/151 (72%), Gaps = 2/151 (1%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89 E GFL+T+V+ L + R GSL +FGLACCA+EMM + R+D+ RFG RAS Sbjct: 4 EEKLPSGFLLTTVEGLAGYVRKGSLWPASFGLACCAIEMMATAGGRFDIARFGMEAFRAS 63 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQ+D+MIVAG ++ KMA LR++YDQM EP++V++MG CA+ GG ++ Y++V+G D I Sbjct: 64 PRQADLMIVAGRVSQKMAPVLRQIYDQMVEPKWVLAMGVCASSGGMFNN-YAIVQGVDHI 122 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 VPVDIY+PGCPP E L+ IL L +KI+++ Sbjct: 123 VPVDIYLPGCPPRPEMLLNAILTLHEKIQQM 153 >gi|261346156|ref|ZP_05973800.1| NADH dehydrogenase I subunit B [Providencia rustigianii DSM 4541] gi|282565809|gb|EFB71344.1| NADH dehydrogenase I subunit B [Providencia rustigianii DSM 4541] Length = 224 Score = 206 bits (524), Expect = 1e-51, Method: Composition-based stats. Identities = 78/181 (43%), Positives = 111/181 (61%), Gaps = 3/181 (1%) Query: 3 LTTVNQKIISGQSSCSLEKVDAD-FSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFG 61 LT ++ + + +++ D + + G L ++ +V W R SL FG Sbjct: 5 LTRIDPNGENDRYPLQTQEIVTDPLEQQVENSVYMGKLSHALHDVVNWGRKNSLWPYNFG 64 Query: 62 LACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 L+CC VEM+ + +D+ RFG RASPRQ+D M+VAGT KMA ++R+YDQM EP Sbjct: 65 LSCCYVEMVTSFTSVHDVARFGAEVLRASPRQADFMVVAGTCFTKMAPVIQRLYDQMLEP 124 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 ++VISMGSCAN GG Y YSVV+G D+ +PVD+Y+PGCPP EA + +LLLQ+ I + Sbjct: 125 KWVISMGSCANSGGMY-DIYSVVQGVDKFIPVDVYIPGCPPRPEAYMQALLLLQESIGKE 183 Query: 181 G 181 Sbjct: 184 R 184 >gi|261416729|ref|YP_003250412.1| NADH-quinone oxidoreductase, B subunit [Fibrobacter succinogenes subsp. succinogenes S85] gi|261373185|gb|ACX75930.1| NADH-quinone oxidoreductase, B subunit [Fibrobacter succinogenes subsp. succinogenes S85] gi|302325376|gb|ADL24577.1| NADH-quinone oxidoreductase, B/C subunit [Fibrobacter succinogenes subsp. succinogenes S85] Length = 419 Score = 205 bits (523), Expect = 1e-51, Method: Composition-based stats. Identities = 73/156 (46%), Positives = 113/156 (72%), Gaps = 2/156 (1%) Query: 27 SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA- 85 +I I ++V ++D +V WAR S+ +T+G +CCA+EMM +SM RYD+ RFG Sbjct: 8 PKILDPIPGGKYVVNAIDYVVNWARANSIWPLTYGTSCCAIEMMSSSMARYDIARFGSEV 67 Query: 86 PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVR 144 R+SPRQ+D+ I+AGT+T +MA A++ +++Q+P P+YVI+MG+C GG + + +YSVVR Sbjct: 68 FRSSPRQADLFILAGTITRRMAPAIQMLWEQIPGPKYVIAMGACTISGGPFIYDNYSVVR 127 Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 G ++PVD++VPGCPP EAL +G+L L++KI + Sbjct: 128 GAQNLIPVDVFVPGCPPRPEALFHGLLTLREKILKE 163 >gi|290958206|ref|YP_003489388.1| NADH dehydrogenase subunit NuoB2 [Streptomyces scabiei 87.22] gi|260647732|emb|CBG70837.1| NADH dehydrogenase subunit NuoB2 [Streptomyces scabiei 87.22] Length = 226 Score = 205 bits (523), Expect = 2e-51, Method: Composition-based stats. Identities = 83/173 (47%), Positives = 111/173 (64%), Gaps = 5/173 (2%) Query: 13 GQSSCSLEKVDADFSRISSEITHKGFLVT----SVDQLVTWARTGSLMWMTFGLACCAVE 68 + + DA + E G L + ++ W R SL FGLACCA+E Sbjct: 4 TPETNPSQAADAPGPVLLPEPKRLGALARLAPEPMKVILNWGRRYSLWVFNFGLACCAIE 63 Query: 69 MMQASMPRYDLERFGFAPR-ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMG 127 + ASM R+D R G P PRQ+D+M+V+GT+T+KMA A++R+Y+QMPEP+YVIS G Sbjct: 64 FIAASMARHDFIRLGVIPFAPGPRQADLMVVSGTVTDKMAPAVKRLYEQMPEPKYVISFG 123 Query: 128 SCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 +C+N GG Y SYSV +G D+I+PVD+YVPGCPP EAL+ GIL LQ+KI R Sbjct: 124 ACSNCGGPYWDSYSVTKGVDQIIPVDVYVPGCPPRPEALLQGILKLQEKIARE 176 >gi|21222983|ref|NP_628762.1| NADH dehydrogenase subunit NuoB2 [Streptomyces coelicolor A3(2)] gi|81621857|sp|Q9F2W1|NUOB2_STRCO RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName: Full=NADH dehydrogenase I subunit B 2; AltName: Full=NDH-1 subunit B 2 gi|10129745|emb|CAC08301.1| NADH dehydrogenase subunit NuoB2 [Streptomyces coelicolor A3(2)] Length = 232 Score = 205 bits (523), Expect = 2e-51, Method: Composition-based stats. Identities = 78/136 (57%), Positives = 102/136 (75%), Gaps = 1/136 (0%) Query: 46 LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR-ASPRQSDVMIVAGTLTN 104 ++ W R SL FGLACCA+E + ASM R+D R G P PRQ+D+M+V+GT+T+ Sbjct: 34 VLNWGRRYSLWVFNFGLACCAIEFIAASMARHDFIRLGVIPFAPGPRQADLMVVSGTVTD 93 Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164 KMA A++R+Y+QMPEP+YVIS G+C+N GG Y SYSV +G D+I+PVD+YVPGCPP E Sbjct: 94 KMAPAVKRLYEQMPEPKYVISFGACSNCGGPYWDSYSVTKGVDQIIPVDVYVPGCPPRPE 153 Query: 165 ALIYGILLLQKKIRRV 180 AL+ GIL LQ+KI R Sbjct: 154 ALLQGILKLQEKIARE 169 >gi|283778533|ref|YP_003369288.1| NADH-quinone oxidoreductase, B subunit [Pirellula staleyi DSM 6068] gi|283436986|gb|ADB15428.1| NADH-quinone oxidoreductase, B subunit [Pirellula staleyi DSM 6068] Length = 192 Score = 205 bits (523), Expect = 2e-51, Method: Composition-based stats. Identities = 73/151 (48%), Positives = 98/151 (64%), Gaps = 2/151 (1%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQ 92 + +VT +D+L W R SL M F ACC +E+M R+DL RFG R SPRQ Sbjct: 5 LPENVMVTKLDELANWCRKNSLWPMPFATACCGIELMATGASRHDLARFGAEVFRFSPRQ 64 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 D+MIVAG + KM L+R++ QM EP++ ISMG+CA+ GG + +Y+VV+G DR +PV Sbjct: 65 CDLMIVAGRVVMKMLPVLQRIWQQMHEPKWCISMGACASTGGVF-DTYAVVQGIDRFIPV 123 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 D+YVPGCPP E L I+ LQ KI+R G + Sbjct: 124 DMYVPGCPPRPEQLTQAIIDLQDKIQREGTI 154 >gi|254480961|ref|ZP_05094207.1| NADH-quinone oxidoreductase, B subunit subfamily, putative [marine gamma proteobacterium HTCC2148] gi|41582331|gb|AAS07945.1| NADH-quinone oxidoreductase, B subunit [uncultured marine bacterium 463] gi|214038756|gb|EEB79417.1| NADH-quinone oxidoreductase, B subunit subfamily, putative [marine gamma proteobacterium HTCC2148] Length = 214 Score = 205 bits (523), Expect = 2e-51, Method: Composition-based stats. Identities = 71/152 (46%), Positives = 101/152 (66%), Gaps = 2/152 (1%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RAS 89 E + ++ L+ W R SL FGL+CC VEM + R+D+ RFG RA+ Sbjct: 24 EEQIKRNVFFARLEDLIAWGRAHSLWPFNFGLSCCYVEMATSFTSRHDIARFGSEVIRAT 83 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQ+D+M+++GT+ KMA ++ +YDQ+ EPR++ISMGSCAN GG Y YSVV+G D+ Sbjct: 84 PRQADLMVISGTVFRKMAPVVQHLYDQLLEPRWIISMGSCANSGGMY-DIYSVVQGVDKF 142 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181 +PVD+YVPGCPP EAL+ G+++LQ I + Sbjct: 143 IPVDVYVPGCPPRPEALMQGLMMLQDAIEQER 174 >gi|29831425|ref|NP_826059.1| NADH dehydrogenase I chain B [Streptomyces avermitilis MA-4680] gi|81718089|sp|Q82DT6|NUOB2_STRAW RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName: Full=NADH dehydrogenase I subunit B 2; AltName: Full=NDH-1 subunit B 2 gi|29608540|dbj|BAC72594.1| putative NADH dehydrogenase I chain B (complex I) [Streptomyces avermitilis MA-4680] Length = 203 Score = 205 bits (523), Expect = 2e-51, Method: Composition-based stats. Identities = 78/136 (57%), Positives = 102/136 (75%), Gaps = 1/136 (0%) Query: 46 LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR-ASPRQSDVMIVAGTLTN 104 ++ W R SL FGLACCA+E + ASM R+D R G P PRQ+D+M+V+GT+T+ Sbjct: 30 VLNWGRRYSLWVFNFGLACCAIEFIAASMARHDFIRLGVIPFAPGPRQADLMVVSGTVTD 89 Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164 KMA A++R+Y+QMPEP+YVIS G+C+N GG Y SYSV +G D+I+PVD+YVPGCPP E Sbjct: 90 KMAPAVKRLYEQMPEPKYVISFGACSNCGGPYWDSYSVTKGVDQIIPVDVYVPGCPPRPE 149 Query: 165 ALIYGILLLQKKIRRV 180 AL+ GIL LQ+KI R Sbjct: 150 ALLQGILKLQEKIARE 165 >gi|298246351|ref|ZP_06970157.1| NADH-quinone oxidoreductase, B subunit [Ktedonobacter racemifer DSM 44963] gi|297553832|gb|EFH87697.1| NADH-quinone oxidoreductase, B subunit [Ktedonobacter racemifer DSM 44963] Length = 200 Score = 205 bits (523), Expect = 2e-51, Method: Composition-based stats. Identities = 83/180 (46%), Positives = 123/180 (68%), Gaps = 7/180 (3%) Query: 1 MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTF 60 MG+T + + + ++ + ++ + + G L T V +++ W+R+ SL F Sbjct: 1 MGITNPWEPVQTYSNTQTPRELP-----MHQKDGSFGVLTTQVSKILDWSRSSSLWPALF 55 Query: 61 GLACCAVEMMQASMPRYDLERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119 GLACCA+EMM S R+DL RFG RASPRQ+D+MIVAG + KMA LR++YDQMPE Sbjct: 56 GLACCAIEMMSTSASRFDLARFGAEVYRASPRQADLMIVAGRCSVKMAPVLRQIYDQMPE 115 Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179 P++VISMG+CA+ GG ++ Y++V+G D+IVPVD+++PGCPPT + L++G LQ+KIR Sbjct: 116 PKWVISMGACASCGGVFNN-YAIVQGVDKIVPVDVFIPGCPPTPDMLLFGFNELQRKIRE 174 >gi|26990814|ref|NP_746239.1| NADH dehydrogenase subunit B [Pseudomonas putida KT2440] gi|148546983|ref|YP_001267085.1| NADH dehydrogenase subunit B [Pseudomonas putida F1] gi|81586001|sp|Q88FH6|NUOB_PSEPK RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|238065196|sp|A5W191|NUOB_PSEP1 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|24985820|gb|AAN69703.1|AE016606_6 NADH dehydrogenase I, B subunit [Pseudomonas putida KT2440] gi|148511041|gb|ABQ77901.1| NADH-quinone oxidoreductase, B subunit [Pseudomonas putida F1] gi|313498030|gb|ADR59396.1| NuoB [Pseudomonas putida BIRD-1] Length = 225 Score = 205 bits (523), Expect = 2e-51, Method: Composition-based stats. Identities = 75/175 (42%), Positives = 107/175 (61%), Gaps = 6/175 (3%) Query: 12 SGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQL----VTWARTGSLMWMTFGLACCAV 67 + + + + ++ + HK + ++ + V W R SL FGL+CC V Sbjct: 12 APNEQYPVGERETVTDQLLEDQVHKNIFMGKLEDVLRGAVNWGRKNSLWPYNFGLSCCYV 71 Query: 68 EMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISM 126 EM A +D+ RFG RASPRQ+D M++AGT KMA ++R+Y+QM EP++VISM Sbjct: 72 EMTTAFTAPHDIARFGAEVIRASPRQADFMVIAGTCFVKMAPIIQRLYEQMLEPKWVISM 131 Query: 127 GSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181 GSCAN GG Y YSVV+G D+ +PVD+YVPGCPP EA + G++LLQ+ I + Sbjct: 132 GSCANSGGMY-DIYSVVQGVDKFLPVDVYVPGCPPRPEAFLQGLMLLQESIGQER 185 >gi|332971177|gb|EGK10141.1| NADH-quinone oxidoreductase subunit B [Psychrobacter sp. 1501(2011)] Length = 222 Score = 205 bits (523), Expect = 2e-51, Method: Composition-based stats. Identities = 82/184 (44%), Positives = 107/184 (58%), Gaps = 11/184 (5%) Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLV----TWARTGSLMWM 58 LT N + + D E ++ + ++ +V W R SL Sbjct: 5 LTRANPDADTYPAQTRQTVTDP-----LEEEVNRNVFMGKLEDMVHASANWGRKHSLWPF 59 Query: 59 TFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQM 117 FG +CC VE +DL RFG RASPRQ+DVMIVAGT KMA ++R+Y+QM Sbjct: 60 NFGTSCCYVEYATTLTAVHDLSRFGAEVIRASPRQADVMIVAGTCFVKMAPVIQRLYEQM 119 Query: 118 PEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 EP++VISMGSCAN GG Y YSVV+G D+I+PVD+YVPGCPP EALI G++LLQ+ I Sbjct: 120 LEPKWVISMGSCANSGGMY-DIYSVVQGVDKIIPVDVYVPGCPPRPEALIQGLMLLQESI 178 Query: 178 RRVG 181 + Sbjct: 179 TKER 182 >gi|322801771|gb|EFZ22368.1| hypothetical protein SINV_15858 [Solenopsis invicta] Length = 189 Score = 205 bits (523), Expect = 2e-51, Method: Composition-based stats. Identities = 94/154 (61%), Positives = 111/154 (72%) Query: 5 TVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLAC 64 + ++ + +S + + VD ++ W R GSL MTFGLAC Sbjct: 36 ATESSVQEAKTPLPGKPKVEPYSPFQGTDNTAEYALARVDDILNWGRKGSLWPMTFGLAC 95 Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 CAVEMM + PRYD++RFG RASPRQSDV+IVAGTLTNKMA ALR++YDQMPEPR+VI Sbjct: 96 CAVEMMHIAAPRYDMDRFGVVFRASPRQSDVIIVAGTLTNKMAPALRKIYDQMPEPRWVI 155 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPG 158 SMGSCANGGGYYHYSYSVVRGCDRI+PVDIYVPG Sbjct: 156 SMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVPG 189 >gi|182412567|ref|YP_001817633.1| NADH-quinone oxidoreductase, B subunit [Opitutus terrae PB90-1] gi|238065033|sp|B1ZUJ0|NUOB2_OPITP RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName: Full=NADH dehydrogenase I subunit B 2; AltName: Full=NDH-1 subunit B 2 gi|177839781|gb|ACB74033.1| NADH-quinone oxidoreductase, B subunit [Opitutus terrae PB90-1] Length = 191 Score = 205 bits (523), Expect = 2e-51, Method: Composition-based stats. Identities = 85/179 (47%), Positives = 109/179 (60%), Gaps = 7/179 (3%) Query: 2 GLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFG 61 LT Q + + S+I +D L+ R SL +TFG Sbjct: 4 PLTPSAQPAPMPSLVAATGPSTPEIPPEVSQIAR----FAKLDDLLALGRANSLWPLTFG 59 Query: 62 LACCAVEMMQASMPRYDLERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 LACCA+EMM A M R+D+ RFG R SPRQ+DVMIVAGT+ KMA A++ +YDQM EP Sbjct: 60 LACCAIEMMAAGMARFDISRFGAEVFRPSPRQADVMIVAGTVNKKMAPAVKLLYDQMLEP 119 Query: 121 RYVISMGSCANGGGYYHYS--YSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 ++VI+MG CA GG + Y Y+VV G D++ PVD+YVPGCPP EALI GIL L++KI Sbjct: 120 KWVIAMGQCAISGGPFKYPGQYAVVEGVDQLFPVDVYVPGCPPRPEALIEGILKLEEKI 178 >gi|319950452|ref|ZP_08024366.1| NADH dehydrogenase subunit B [Dietzia cinnamea P4] gi|319435875|gb|EFV91081.1| NADH dehydrogenase subunit B [Dietzia cinnamea P4] Length = 184 Score = 205 bits (523), Expect = 2e-51, Method: Composition-based stats. Identities = 85/151 (56%), Positives = 110/151 (72%), Gaps = 2/151 (1%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89 E GFL+T+V+QL + R GSL TFGLACCA+EMM S RYDL RFG RAS Sbjct: 4 EEKLPAGFLLTTVEQLAGYMRKGSLWPATFGLACCAIEMMATSGGRYDLARFGTEVFRAS 63 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQ+D+MIVAG ++ KMA LR+VYDQM EP++V+SMG CA+ GG ++ Y++V+G D I Sbjct: 64 PRQADLMIVAGRVSQKMAPVLRQVYDQMAEPKWVLSMGVCASSGGMFNN-YAIVQGVDHI 122 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 VPVDIY+PGCPP E L++ I+ L KI+ + Sbjct: 123 VPVDIYLPGCPPRPEMLMHAIITLHDKIQNM 153 >gi|226227067|ref|YP_002761173.1| NADH-quinone oxidoreductase chain B [Gemmatimonas aurantiaca T-27] gi|226090258|dbj|BAH38703.1| NADH-quinone oxidoreductase chain B [Gemmatimonas aurantiaca T-27] Length = 212 Score = 205 bits (523), Expect = 2e-51, Method: Composition-based stats. Identities = 77/148 (52%), Positives = 107/148 (72%), Gaps = 2/148 (1%) Query: 35 HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA-SPRQS 93 H G++ T +D LV W R GSL M FG ACCA+E M + R+DL RFG + SPRQ+ Sbjct: 23 HDGWITTRLDFLVNWGRAGSLWPMPFGTACCAIEFMATAASRFDLSRFGMERLSYSPRQA 82 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD 153 DV++ AG + K+A LRR+Y QMP+P++VISMG+CA+ GG + +Y+VV+G D I+PVD Sbjct: 83 DVLLCAGRVPLKLAPVLRRIYQQMPQPKWVISMGACASTGGMF-DNYAVVQGIDTIIPVD 141 Query: 154 IYVPGCPPTAEALIYGILLLQKKIRRVG 181 +YVPGCPP EAL++ I++LQKK+ + Sbjct: 142 VYVPGCPPRPEALMHAIIMLQKKVMQER 169 >gi|326567954|gb|EGE18051.1| NADH dehydrogenase subunit B [Moraxella catarrhalis BC1] gi|326577449|gb|EGE27333.1| NADH dehydrogenase subunit B [Moraxella catarrhalis O35E] Length = 223 Score = 205 bits (523), Expect = 2e-51, Method: Composition-based stats. Identities = 82/184 (44%), Positives = 105/184 (57%), Gaps = 11/184 (5%) Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQL----VTWARTGSLMWM 58 LT NQ + ++ I+ K + + L W R SL Sbjct: 5 LTKPNQ-----HTKQYPQQSREIIDDITQAEVDKNVFLGRLSDLTHNLANWGRKNSLWPF 59 Query: 59 TFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQM 117 FG +CC VE +DL RFG RASPRQ+DVMIVAGT KMA + R+Y+QM Sbjct: 60 NFGTSCCYVEYATTLTGVHDLSRFGAEVIRASPRQADVMIVAGTCFVKMAPVILRLYEQM 119 Query: 118 PEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 EP++VISMG+CAN GG Y YSVV+G D+I+PVD+YVPGCPP EALI I+LLQ+ I Sbjct: 120 LEPKWVISMGACANSGGMY-DIYSVVQGVDKILPVDVYVPGCPPRPEALIQAIMLLQESI 178 Query: 178 RRVG 181 ++ Sbjct: 179 QKER 182 >gi|260551032|ref|ZP_05825237.1| NADH:ubiquinone oxidoreductase 20 kDa subunit [Acinetobacter sp. RUH2624] gi|262280145|ref|ZP_06057930.1| NADH-quinone oxidoreductase subunit C/D [Acinetobacter calcoaceticus RUH2202] gi|299771418|ref|YP_003733444.1| NADH dehydrogenase subunit B [Acinetobacter sp. DR1] gi|260405980|gb|EEW99467.1| NADH:ubiquinone oxidoreductase 20 kDa subunit [Acinetobacter sp. RUH2624] gi|262260496|gb|EEY79229.1| NADH-quinone oxidoreductase subunit C/D [Acinetobacter calcoaceticus RUH2202] gi|298701506|gb|ADI92071.1| NADH dehydrogenase subunit B [Acinetobacter sp. DR1] Length = 225 Score = 205 bits (522), Expect = 2e-51, Method: Composition-based stats. Identities = 81/181 (44%), Positives = 109/181 (60%), Gaps = 11/181 (6%) Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQL----VTWARTGSLMWM 58 LT N L++ + E+ +K +T ++ + V W R SL Sbjct: 5 LTRANP----DADQYPLQERQIVTDPLEEEV-NKNVFMTRLEDVLHTAVNWGRKNSLWPF 59 Query: 59 TFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQM 117 FG +CC VE +DL RFG RASPRQ+D+MIVAGT KMA ++R+Y+QM Sbjct: 60 NFGTSCCYVEYATTLTGVHDLSRFGAEVIRASPRQADLMIVAGTCFVKMAPVIQRLYEQM 119 Query: 118 PEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 EP++VISMG+CAN GG Y YSVV+G D+I+PVD+YVPGCPP EALI ++LLQ +I Sbjct: 120 LEPKWVISMGACANSGGMY-DIYSVVQGVDKIIPVDVYVPGCPPRPEALIQALMLLQDQI 178 Query: 178 R 178 + Sbjct: 179 Q 179 >gi|149034568|gb|EDL89305.1| NADH dehydrogenase (ubiquinone) Fe-S protein 7, isoform CRA_a [Rattus norvegicus] Length = 210 Score = 205 bits (522), Expect = 2e-51, Method: Composition-based stats. Identities = 101/156 (64%), Positives = 118/156 (75%), Gaps = 5/156 (3%) Query: 2 GLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFG 61 G + Q +S + ++ + R +E ++VT +D L+ WAR SL MTFG Sbjct: 36 GSPSSTQSAVSKAGAGAVVPKPSHLPRSRAE-----YVVTKLDDLINWARRSSLWPMTFG 90 Query: 62 LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPR 121 LACCAVEMM + PRYD++RFG RASPRQ+DVMIVAGTLTNKMA ALR+VYDQMPEPR Sbjct: 91 LACCAVEMMHMAAPRYDMDRFGVVFRASPRQADVMIVAGTLTNKMAPALRKVYDQMPEPR 150 Query: 122 YVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 YV+SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP Sbjct: 151 YVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 186 >gi|284034118|ref|YP_003384049.1| NADH-quinone oxidoreductase subunit B [Kribbella flavida DSM 17836] gi|283813411|gb|ADB35250.1| NADH-quinone oxidoreductase, B subunit [Kribbella flavida DSM 17836] Length = 178 Score = 205 bits (522), Expect = 2e-51, Method: Composition-based stats. Identities = 79/133 (59%), Positives = 100/133 (75%), Gaps = 1/133 (0%) Query: 46 LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR-ASPRQSDVMIVAGTLTN 104 L+ W R SL FGLACCA+E + ASM R+D R G P PRQ+D+M+V+GT+T+ Sbjct: 22 LLNWGRKYSLWVFNFGLACCAIEFIAASMGRHDFIRLGVIPFAPGPRQADLMVVSGTVTD 81 Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164 KMA A++R+YDQMPEP+YVIS GSC+N GG Y SY V +G D+I+PVD+YVPGCPP E Sbjct: 82 KMAPAIKRLYDQMPEPKYVISFGSCSNSGGPYWDSYCVTKGVDQIIPVDVYVPGCPPRPE 141 Query: 165 ALIYGILLLQKKI 177 AL+ GIL LQ+KI Sbjct: 142 ALLQGILKLQEKI 154 >gi|301631485|ref|XP_002944828.1| PREDICTED: NADH-quinone oxidoreductase subunit B-like [Xenopus (Silurana) tropicalis] Length = 164 Score = 205 bits (522), Expect = 2e-51, Method: Composition-based stats. Identities = 103/136 (75%), Positives = 117/136 (86%), Gaps = 1/136 (0%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPR 91 + +GF+ TS D +V WA+TGS+ MTFGLACCAVEMM A+ RYDL RFG RASPR Sbjct: 5 VMKEGFVTTSYDAVVNWAKTGSIWPMTFGLACCAVEMMHAASARYDLARFGAEVFRASPR 64 Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151 QSD+MIVAGTL NKMA A+R+VYDQM EPR+V+SMGSCANGGGYYHYSYSVVRGCDR+VP Sbjct: 65 QSDLMIVAGTLCNKMAPAMRKVYDQMSEPRWVLSMGSCANGGGYYHYSYSVVRGCDRVVP 124 Query: 152 VDIYVPGCPPTAEALI 167 VD+YVPGCPPTAEALI Sbjct: 125 VDVYVPGCPPTAEALI 140 >gi|296112931|ref|YP_003626869.1| NADH-quinone oxidoreductase subunit B [Moraxella catarrhalis RH4] gi|295920625|gb|ADG60976.1| NADH-quinone oxidoreductase subunit B [Moraxella catarrhalis RH4] gi|326561154|gb|EGE11519.1| NADH dehydrogenase subunit B [Moraxella catarrhalis 7169] Length = 223 Score = 205 bits (522), Expect = 2e-51, Method: Composition-based stats. Identities = 82/184 (44%), Positives = 105/184 (57%), Gaps = 11/184 (5%) Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQL----VTWARTGSLMWM 58 LT NQ + ++ I+ K + + L W R SL Sbjct: 5 LTKPNQ-----HTKQYPQQSREIIDDITQAEVDKNVFLGRLSDLTHNLANWGRKNSLWPF 59 Query: 59 TFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQM 117 FG +CC VE +DL RFG RASPRQ+DVMIVAGT KMA + R+Y+QM Sbjct: 60 NFGTSCCYVEYATTLTGVHDLSRFGAEVIRASPRQADVMIVAGTCFVKMAPVILRLYEQM 119 Query: 118 PEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 EP++VISMG+CAN GG Y YSVV+G D+I+PVD+YVPGCPP EALI I+LLQ+ I Sbjct: 120 LEPKWVISMGACANSGGMY-DIYSVVQGVDKILPVDVYVPGCPPRPEALIQAIMLLQESI 178 Query: 178 RRVG 181 ++ Sbjct: 179 QKER 182 >gi|326382762|ref|ZP_08204452.1| NADH dehydrogenase subunit B [Gordonia neofelifaecis NRRL B-59395] gi|326198352|gb|EGD55536.1| NADH dehydrogenase subunit B [Gordonia neofelifaecis NRRL B-59395] Length = 184 Score = 205 bits (522), Expect = 2e-51, Method: Composition-based stats. Identities = 78/151 (51%), Positives = 109/151 (72%), Gaps = 2/151 (1%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89 E GF++++V+ L + R GSL TFGLACCA+EMM + RYDL RFG RAS Sbjct: 4 EEQLPGGFVLSTVESLAGYFRKGSLWPATFGLACCAIEMMATTAGRYDLARFGMEAFRAS 63 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQ+D+MIVAG ++ KMA LR++YDQM EP++V++MG CA+ GG ++ Y++V+G D + Sbjct: 64 PRQADLMIVAGRVSQKMAPVLRQIYDQMAEPKWVLAMGVCASSGGMFNN-YAIVQGVDHV 122 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 VPVDIY+PGCPP E L+ IL L +I+++ Sbjct: 123 VPVDIYLPGCPPRPEMLLNAILELHDQIQQM 153 >gi|320102221|ref|YP_004177812.1| NADH-quinone oxidoreductase subunit B [Isosphaera pallida ATCC 43644] gi|319749503|gb|ADV61263.1| NADH-quinone oxidoreductase, B subunit [Isosphaera pallida ATCC 43644] Length = 247 Score = 205 bits (522), Expect = 2e-51, Method: Composition-based stats. Identities = 72/174 (41%), Positives = 107/174 (61%), Gaps = 2/174 (1%) Query: 11 ISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMM 70 + + + + + E +G ++TS+D +V W R S M F ACC +E+M Sbjct: 23 TASPTVLTPTRALGQITSGPVEELPEGVILTSLDSVVNWCRKYSFWPMPFATACCGIELM 82 Query: 71 QASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSC 129 R+D+ RFG R SPRQ D+MIVAG + KM L+R++ QMPEP++ ISMG+C Sbjct: 83 SVGASRFDIARFGAEVMRFSPRQCDLMIVAGRVVMKMMPVLQRIWLQMPEPKWCISMGAC 142 Query: 130 ANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 A+ GG + +Y+VV+G DR +PVD+Y+PGCPP E ++ IL LQ K++R G + Sbjct: 143 ASTGGIF-DTYAVVQGIDRFIPVDVYIPGCPPRPEQILRAILDLQDKVQRGGKL 195 >gi|293609138|ref|ZP_06691441.1| NADH-quinone oxidoreductase [Acinetobacter sp. SH024] gi|292829711|gb|EFF88073.1| NADH-quinone oxidoreductase [Acinetobacter sp. SH024] gi|325121082|gb|ADY80605.1| NADH dehydrogenase I chain B [Acinetobacter calcoaceticus PHEA-2] Length = 225 Score = 205 bits (522), Expect = 2e-51, Method: Composition-based stats. Identities = 81/181 (44%), Positives = 109/181 (60%), Gaps = 11/181 (6%) Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQL----VTWARTGSLMWM 58 LT N L++ + E+ +K +T ++ + V W R SL Sbjct: 5 LTRANP----DADQYPLQERQIVTDPLEEEV-NKNVFMTRLEDVLHTAVNWGRKNSLWPF 59 Query: 59 TFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQM 117 FG +CC VE +DL RFG RASPRQ+D+MIVAGT KMA ++R+Y+QM Sbjct: 60 NFGTSCCYVEYATTLTGVHDLSRFGAEVIRASPRQADLMIVAGTCFVKMAPVIQRLYEQM 119 Query: 118 PEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 EP++VISMG+CAN GG Y YSVV+G D+I+PVD+YVPGCPP EALI ++LLQ +I Sbjct: 120 LEPKWVISMGACANSGGMY-DIYSVVQGVDKIIPVDVYVPGCPPRPEALIQALMLLQDQI 178 Query: 178 R 178 + Sbjct: 179 Q 179 >gi|212712277|ref|ZP_03320405.1| hypothetical protein PROVALCAL_03363 [Providencia alcalifaciens DSM 30120] gi|212685023|gb|EEB44551.1| hypothetical protein PROVALCAL_03363 [Providencia alcalifaciens DSM 30120] Length = 224 Score = 205 bits (522), Expect = 2e-51, Method: Composition-based stats. Identities = 78/181 (43%), Positives = 111/181 (61%), Gaps = 3/181 (1%) Query: 3 LTTVNQKIISGQSSCSLEKVDAD-FSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFG 61 LT ++ + + +++ D + + G L ++ +V W R SL FG Sbjct: 5 LTRIDPNGENDRYPLQTQEIVTDPLEQQVENSVYMGKLSHALHDVVNWGRKNSLWPYNFG 64 Query: 62 LACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 L+CC VEM+ + +D+ RFG RASPRQ+D M+VAGT KMA ++R+YDQM EP Sbjct: 65 LSCCYVEMVTSFTAVHDVARFGAEVLRASPRQADFMVVAGTCFTKMAPVIQRLYDQMLEP 124 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 ++VISMGSCAN GG Y YSVV+G D+ +PVD+Y+PGCPP EA + +LLLQ+ I + Sbjct: 125 KWVISMGSCANSGGMY-DIYSVVQGVDKFIPVDVYIPGCPPRPEAYMQALLLLQESIGKE 183 Query: 181 G 181 Sbjct: 184 R 184 >gi|308746024|ref|YP_003934562.1| NADH-plastoquinone oxidoreductase subunit K [Cheilanthes lindheimeri] gi|302375457|gb|ADL29831.1| NADH-plastoquinone oxidoreductase subunit K [Cheilanthes lindheimeri] Length = 250 Score = 205 bits (522), Expect = 2e-51, Method: Composition-based stats. Identities = 65/150 (43%), Positives = 97/150 (64%), Gaps = 1/150 (0%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP 90 + + S+ +R SL + +G +CC +E R+D +R+G PR+SP Sbjct: 34 QQSVSDSIFLASISDFSNRSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSP 93 Query: 91 RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGCDRI 149 RQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D++ Sbjct: 94 RQADLIVTAGTITMKMAPSLIRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKL 153 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRR 179 +PVDI++PGCPP EA+ + L+KKI R Sbjct: 154 IPVDIHLPGCPPKPEAITDAVTKLRKKIAR 183 >gi|319789707|ref|YP_004151340.1| NADH-quinone oxidoreductase, B subunit [Thermovibrio ammonificans HB-1] gi|317114209|gb|ADU96699.1| NADH-quinone oxidoreductase, B subunit [Thermovibrio ammonificans HB-1] Length = 157 Score = 205 bits (522), Expect = 2e-51, Method: Composition-based stats. Identities = 67/150 (44%), Positives = 101/150 (67%), Gaps = 1/150 (0%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93 +G +T + L+ W R G+L + F ACC +EMM A+ RYD +RFG R +PRQ Sbjct: 3 LREGVFLTKLQDLINWGRKGALWPLAFATACCGIEMMAAAASRYDFDRFGVIFRNTPRQC 62 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD 153 D++I+ GT++ KMA ++R++DQMP+P++ I++GSCA G + +YS +RG D IVPVD Sbjct: 63 DLLIMCGTISRKMAPIIKRLWDQMPDPKWAIAIGSCAISGNIF-QTYSTLRGLDCIVPVD 121 Query: 154 IYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 +YVPGC P EA +++LQ+KI+R + Sbjct: 122 VYVPGCAPKPEAFYEALIMLQEKIKRDKPI 151 >gi|108798549|ref|YP_638746.1| NADH dehydrogenase subunit B [Mycobacterium sp. MCS] gi|126434147|ref|YP_001069838.1| NADH dehydrogenase subunit B [Mycobacterium sp. JLS] gi|122977218|sp|Q1BBP4|NUOB_MYCSS RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|238065180|sp|A3PWS0|NUOB_MYCSJ RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|108768968|gb|ABG07690.1| NADH dehydrogenase subunit B [Mycobacterium sp. MCS] gi|126233947|gb|ABN97347.1| NADH dehydrogenase subunit B [Mycobacterium sp. JLS] Length = 184 Score = 205 bits (522), Expect = 2e-51, Method: Composition-based stats. Identities = 74/151 (49%), Positives = 111/151 (73%), Gaps = 2/151 (1%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89 E G L+++V+++ + R GSL TFGLACCA+EMM + PR+D+ RFG A+ Sbjct: 4 EERLPGGILLSTVEKVAGYVRAGSLWPATFGLACCAIEMMSTAGPRFDISRFGMERFSAT 63 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQ+D+MIVAG ++ KMA LR++YDQM EP++V++MG CA+ GG ++ Y++V+G D + Sbjct: 64 PRQADLMIVAGRVSQKMAPVLRQIYDQMAEPKWVLAMGVCASSGGMFNN-YAIVQGVDHV 122 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 VPVDIY+PGCPP E L++ I+ L +KI+++ Sbjct: 123 VPVDIYLPGCPPRPEMLLHAIIKLHEKIQQM 153 >gi|297159540|gb|ADI09252.1| NADH dehydrogenase subunit NuoB2 [Streptomyces bingchenggensis BCW-1] Length = 214 Score = 205 bits (522), Expect = 2e-51, Method: Composition-based stats. Identities = 79/171 (46%), Positives = 109/171 (63%), Gaps = 1/171 (0%) Query: 11 ISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMM 70 ++ + + D T + ++ W R SL FGLACCA+E + Sbjct: 3 VTPNPAPTPASTPVDLPEPRRLGTLARLAPEPMKVVLNWGRRYSLWVFNFGLACCAIEFI 62 Query: 71 QASMPRYDLERFGFAPR-ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSC 129 ASM R+D R G P PRQ+D+M+V+GT+T+KMA A++R+Y+QMPEP+YVIS G+C Sbjct: 63 AASMARHDFIRLGVIPFAPGPRQADLMVVSGTVTDKMAPAVKRLYEQMPEPKYVISFGAC 122 Query: 130 ANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 +N GG Y SY+V +G D+I+PVD+YVPGCPP EAL+ GIL LQ+KI R Sbjct: 123 SNCGGPYWDSYAVTKGVDQIIPVDVYVPGCPPRPEALLQGILKLQEKIARE 173 >gi|48478473|ref|YP_024179.1| NADH dehydrogenase subunit B [Picrophilus torridus DSM 9790] gi|48431121|gb|AAT43986.1| NADH-quinone oxidoreductase chain B [Picrophilus torridus DSM 9790] Length = 154 Score = 205 bits (522), Expect = 2e-51, Method: Composition-based stats. Identities = 81/145 (55%), Positives = 105/145 (72%), Gaps = 1/145 (0%) Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APRASPRQSDV 95 G+ +T+V++ + WAR+ SL +T GLACCA+EMM D+ RFG R SPRQ+D+ Sbjct: 7 GYQLTTVEKALEWARSNSLWPLTMGLACCAIEMMATQGSNLDIARFGSEIFRNSPRQADL 66 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155 MIVAGT T +MA +RR+Y++MP P+YVI+MG C GG Y YSVV G DR++PVD+Y Sbjct: 67 MIVAGTTTKRMAPRVRRIYEEMPYPKYVIAMGVCVIQGGPYVDGYSVVLGVDRVIPVDVY 126 Query: 156 VPGCPPTAEALIYGILLLQKKIRRV 180 VPGCPP+ +AL GILLLQKKIR Sbjct: 127 VPGCPPSPQALTNGILLLQKKIRNE 151 >gi|325277477|ref|ZP_08143082.1| NADH dehydrogenase subunit B [Pseudomonas sp. TJI-51] gi|324097393|gb|EGB95634.1| NADH dehydrogenase subunit B [Pseudomonas sp. TJI-51] Length = 225 Score = 205 bits (522), Expect = 2e-51, Method: Composition-based stats. Identities = 75/175 (42%), Positives = 107/175 (61%), Gaps = 6/175 (3%) Query: 12 SGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQL----VTWARTGSLMWMTFGLACCAV 67 + + + + ++ + HK + ++ + V W R SL FGL+CC V Sbjct: 12 APNEQYPVGERETVTDQLLEDQVHKNIFMGKLEDVLRGAVNWGRKNSLWPYNFGLSCCYV 71 Query: 68 EMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISM 126 EM A +D+ RFG RASPRQ+D M++AGT KMA ++R+Y+QM EP++VISM Sbjct: 72 EMTTAFTAPHDIARFGAEVIRASPRQADFMVIAGTCFVKMAPIIQRLYEQMLEPKWVISM 131 Query: 127 GSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181 GSCAN GG Y YSVV+G D+ +PVD+YVPGCPP EA + G++LLQ+ I + Sbjct: 132 GSCANSGGMY-DIYSVVQGVDKFLPVDVYVPGCPPRPEAFLQGLMLLQESIGQER 185 >gi|256785904|ref|ZP_05524335.1| NADH dehydrogenase subunit NuoB2 [Streptomyces lividans TK24] Length = 232 Score = 205 bits (522), Expect = 2e-51, Method: Composition-based stats. Identities = 78/136 (57%), Positives = 102/136 (75%), Gaps = 1/136 (0%) Query: 46 LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR-ASPRQSDVMIVAGTLTN 104 ++ W R SL FGLACCA+E + ASM R+D R G P PRQ+D+M+V+GT+T+ Sbjct: 36 VLNWGRRYSLWVFNFGLACCAIEFIAASMARHDFIRLGVIPFAPGPRQADLMVVSGTVTD 95 Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164 KMA A++R+Y+QMPEP+YVIS G+C+N GG Y SYSV +G D+I+PVD+YVPGCPP E Sbjct: 96 KMAPAVKRLYEQMPEPKYVISFGACSNCGGPYWDSYSVTKGVDQIIPVDVYVPGCPPRPE 155 Query: 165 ALIYGILLLQKKIRRV 180 AL+ GIL LQ+KI R Sbjct: 156 ALLQGILKLQEKIARE 171 >gi|329944203|ref|ZP_08292462.1| NADH-quinone oxidoreductase subunit 6 [Actinomyces sp. oral taxon 170 str. F0386] gi|328530933|gb|EGF57789.1| NADH-quinone oxidoreductase subunit 6 [Actinomyces sp. oral taxon 170 str. F0386] Length = 204 Score = 205 bits (522), Expect = 2e-51, Method: Composition-based stats. Identities = 81/160 (50%), Positives = 118/160 (73%), Gaps = 2/160 (1%) Query: 21 KVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLE 80 K + ++ ++E+ GFL+T+V++L A+ S+ +T GLACCA+EMM A PR+D+ Sbjct: 14 KRNDPYAAAAAEVDSPGFLLTTVERLAGLAQARSMWPVTMGLACCAIEMMAAGTPRFDMA 73 Query: 81 RFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS 139 RFG+ RASPR +DVMIV+G +++KMA +R VYD MPEP++VISMG+CA+ GG ++ Sbjct: 74 RFGWEVFRASPRHADVMIVSGRVSHKMAPIVRNVYDSMPEPKWVISMGACASSGGIFNN- 132 Query: 140 YSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179 Y+VV+GCD IVPVDIY+PGCPP E L+ +L L ++I + Sbjct: 133 YAVVQGCDHIVPVDIYLPGCPPRPEMLLNAMLELTRQIEK 172 >gi|262376776|ref|ZP_06070004.1| trifunctional NADH dehydrogenase I subunit B/C/D [Acinetobacter lwoffii SH145] gi|262308486|gb|EEY89621.1| trifunctional NADH dehydrogenase I subunit B/C/D [Acinetobacter lwoffii SH145] Length = 226 Score = 205 bits (522), Expect = 3e-51, Method: Composition-based stats. Identities = 79/181 (43%), Positives = 107/181 (59%), Gaps = 10/181 (5%) Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLV----TWARTGSLMWM 58 LT N + D + E +K +T ++ +V W R S+ Sbjct: 5 LTRANPNADQYPLQERIVVEDP----LLEEEVNKNVFMTRLEDVVHTAVNWGRKNSVWPF 60 Query: 59 TFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQM 117 FG +CC VE +DL RFG RASPRQ+D+MIVAGT KMA ++R+Y+QM Sbjct: 61 NFGTSCCYVEYATTLTGVHDLSRFGAEVIRASPRQADLMIVAGTCFVKMAPVIQRLYEQM 120 Query: 118 PEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 EP++VISMG+CAN GG Y YSVV+G D+I+PVD+Y+PGCPP EALI ++LLQ +I Sbjct: 121 LEPKWVISMGACANSGGMY-DIYSVVQGVDKIIPVDVYIPGCPPRPEALIQALMLLQDQI 179 Query: 178 R 178 + Sbjct: 180 Q 180 >gi|307328659|ref|ZP_07607832.1| NADH-quinone oxidoreductase, B subunit [Streptomyces violaceusniger Tu 4113] gi|306885771|gb|EFN16784.1| NADH-quinone oxidoreductase, B subunit [Streptomyces violaceusniger Tu 4113] Length = 231 Score = 205 bits (521), Expect = 3e-51, Method: Composition-based stats. Identities = 77/136 (56%), Positives = 102/136 (75%), Gaps = 1/136 (0%) Query: 46 LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR-ASPRQSDVMIVAGTLTN 104 ++ W R SL FGLACCA+E + ASM R+D R G P PRQ+D+M+V+GT+T+ Sbjct: 56 VLNWGRRYSLWVFNFGLACCAIEFIAASMARHDFIRLGVIPFAPGPRQADLMVVSGTVTD 115 Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164 KMA A++R+Y+QMPEP+YVIS G+C+N GG Y SY+V +G D+I+PVD+YVPGCPP E Sbjct: 116 KMAPAVKRLYEQMPEPKYVISFGACSNCGGPYWDSYAVTKGVDQIIPVDVYVPGCPPRPE 175 Query: 165 ALIYGILLLQKKIRRV 180 AL+ GIL LQ+KI R Sbjct: 176 ALLQGILKLQEKIARE 191 >gi|311744393|ref|ZP_07718195.1| NADH-quinone oxidoreductase subunit B [Aeromicrobium marinum DSM 15272] gi|311312359|gb|EFQ82274.1| NADH-quinone oxidoreductase subunit B [Aeromicrobium marinum DSM 15272] Length = 184 Score = 205 bits (521), Expect = 3e-51, Method: Composition-based stats. Identities = 78/149 (52%), Positives = 103/149 (69%), Gaps = 2/149 (1%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89 E G L+++V+ L + R S TFGLACCA+EMM PRYD RFG R S Sbjct: 4 EEKLPSGVLLSTVEDLAGYFRKASFWPATFGLACCAIEMMTFGAPRYDSSRFGMEVFRPS 63 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQ+D+MIVAG ++NKMA LR++YDQM EP+YV++MG CA+ GG ++ Y++V+G D + Sbjct: 64 PRQADLMIVAGRVSNKMAPVLRQIYDQMAEPKYVLAMGVCASSGGMFNN-YAIVQGVDHV 122 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIR 178 VPVD+Y+PGCPP E LI IL L KI+ Sbjct: 123 VPVDMYLPGCPPRPEMLIDAILKLHDKIQ 151 >gi|326565205|gb|EGE15391.1| NADH dehydrogenase subunit B [Moraxella catarrhalis 103P14B1] gi|326574002|gb|EGE23951.1| NADH dehydrogenase subunit B [Moraxella catarrhalis CO72] gi|326577029|gb|EGE26924.1| NADH dehydrogenase subunit B [Moraxella catarrhalis 101P30B1] Length = 222 Score = 205 bits (521), Expect = 3e-51, Method: Composition-based stats. Identities = 82/184 (44%), Positives = 105/184 (57%), Gaps = 11/184 (5%) Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQL----VTWARTGSLMWM 58 LT NQ + ++ I+ K + + L W R SL Sbjct: 5 LTKPNQ-----HTKQYPQQSREIIDDITQAEVDKNVFLGRLSDLTHNLANWGRKNSLWPF 59 Query: 59 TFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQM 117 FG +CC VE +DL RFG RASPRQ+DVMIVAGT KMA + R+Y+QM Sbjct: 60 NFGTSCCYVEYATTLTGVHDLSRFGAEVIRASPRQADVMIVAGTCFVKMAPVILRLYEQM 119 Query: 118 PEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 EP++VISMG+CAN GG Y YSVV+G D+I+PVD+YVPGCPP EALI I+LLQ+ I Sbjct: 120 LEPKWVISMGACANSGGMY-DIYSVVQGVDKILPVDVYVPGCPPRPEALIQAIMLLQESI 178 Query: 178 RRVG 181 ++ Sbjct: 179 QKER 182 >gi|329765844|ref|ZP_08257410.1| NADH-quinone oxidoreductase, B subunit [Candidatus Nitrosoarchaeum limnia SFB1] gi|329137687|gb|EGG41957.1| NADH-quinone oxidoreductase, B subunit [Candidatus Nitrosoarchaeum limnia SFB1] Length = 174 Score = 205 bits (521), Expect = 3e-51, Method: Composition-based stats. Identities = 78/152 (51%), Positives = 101/152 (66%), Gaps = 5/152 (3%) Query: 38 FLVTSVDQ----LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQ 92 L ++D+ + W R SL + ACC+VE AS PRYD+ERFG S RQ Sbjct: 21 ILEKAIDKPLGYAINWGRIWSLWPVHIETACCSVEFGAASSPRYDVERFGIIEAFGSLRQ 80 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 D+++V GT+T KMA LR VYDQMPEP+YVI+MG+CA GG Y SY+V+ G D ++PV Sbjct: 81 CDLIVVQGTITRKMAPRLRLVYDQMPEPKYVIAMGACAITGGLYFDSYNVLPGIDGVLPV 140 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 D+YVPGCPP E LI G +LLQ+KI+R+ K Sbjct: 141 DVYVPGCPPRPETLIQGCMLLQEKIKRMKARK 172 >gi|153004155|ref|YP_001378480.1| NADH dehydrogenase subunit B [Anaeromyxobacter sp. Fw109-5] gi|218527973|sp|A7H9V0|NUOB1_ANADF RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName: Full=NADH dehydrogenase I subunit B 1; AltName: Full=NDH-1 subunit B 1 gi|152027728|gb|ABS25496.1| NADH-quinone oxidoreductase, B subunit [Anaeromyxobacter sp. Fw109-5] Length = 172 Score = 205 bits (521), Expect = 3e-51, Method: Composition-based stats. Identities = 82/141 (58%), Positives = 105/141 (74%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 F + +D+L+ AR SL ++ FGLACC +E+MQ PR D+ RFG PRASPRQ+D MI Sbjct: 16 FHTSQLDKLINMARENSLWYLLFGLACCGIELMQFGGPRADVMRFGAIPRASPRQADFMI 75 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 VAGTLT KMA + +YDQMPEP+YVISMGSC+N GG + YSV +G D+++PVD+YVP Sbjct: 76 VAGTLTYKMAERAKLLYDQMPEPKYVISMGSCSNCGGLFQLGYSVCKGVDKVIPVDVYVP 135 Query: 158 GCPPTAEALIYGILLLQKKIR 178 GCPP EAL G++ LQ+ IR Sbjct: 136 GCPPRPEALTEGLIRLQELIR 156 >gi|312139310|ref|YP_004006646.1| NADH dehydrogenase (quinone) chain b nuob [Rhodococcus equi 103S] gi|325673384|ref|ZP_08153075.1| NADH-quinone oxidoreductase subunit B [Rhodococcus equi ATCC 33707] gi|311888649|emb|CBH47961.1| NADH dehydrogenase (quinone) chain B NuoB [Rhodococcus equi 103S] gi|325555405|gb|EGD25076.1| NADH-quinone oxidoreductase subunit B [Rhodococcus equi ATCC 33707] Length = 190 Score = 205 bits (521), Expect = 3e-51, Method: Composition-based stats. Identities = 81/149 (54%), Positives = 108/149 (72%), Gaps = 2/149 (1%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89 E GFL+++V+ + +AR GSL TFGLACCA+EMM + RYDL RFG RAS Sbjct: 4 EEKVPGGFLLSTVETVAGYARKGSLWPATFGLACCAIEMMATTSGRYDLARFGMEAFRAS 63 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQ+D+MIVAG ++ KMA LR+VYDQM EP++V++MG CA+ GG ++ Y++V+G D + Sbjct: 64 PRQADLMIVAGRVSQKMAPVLRQVYDQMVEPKWVLAMGVCASSGGMFNN-YAIVQGVDHV 122 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIR 178 VPVDIY+PGCPP E L+ IL L KI+ Sbjct: 123 VPVDIYLPGCPPRPEMLLDAILALHAKIQ 151 >gi|170727205|ref|YP_001761231.1| NADH-quinone oxidoreductase subunit B [Shewanella woodyi ATCC 51908] gi|238065215|sp|B1KJU9|NUOB_SHEWM RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|169812552|gb|ACA87136.1| NADH-quinone oxidoreductase, B subunit [Shewanella woodyi ATCC 51908] Length = 213 Score = 205 bits (521), Expect = 3e-51, Method: Composition-based stats. Identities = 76/152 (50%), Positives = 107/152 (70%), Gaps = 2/152 (1%) Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP- 86 + E+ K LVT ++ LV W R+ SL FGL+CC VEM + R+D+ RFG Sbjct: 16 QTMQEVVEKNLLVTRLEDLVAWGRSNSLWPFNFGLSCCYVEMATSFTSRHDIARFGSEVI 75 Query: 87 RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGC 146 RA+PR++D+++++GT+ KMA ++ +YDQM EP++VI MGSCAN GG Y YSVV+G Sbjct: 76 RATPREADLIVISGTVFLKMAPVIKHLYDQMLEPKWVICMGSCANSGGMY-DVYSVVQGA 134 Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 DR +P+D+YVPGCPP EAL+YG+ LLQ+ I+ Sbjct: 135 DRFLPIDLYVPGCPPRPEALMYGLTLLQEAIK 166 >gi|167042391|gb|ABZ07118.1| putative NADH ubiquinone oxidoreductase, 20 Kd subunit [uncultured marine crenarchaeote HF4000_ANIW97P9] Length = 185 Score = 205 bits (521), Expect = 3e-51, Method: Composition-based stats. Identities = 80/149 (53%), Positives = 100/149 (67%), Gaps = 5/149 (3%) Query: 38 FLVTSVDQ----LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQ 92 L +VD+ + W R SL + ACC+VE AS PRYD+ERFG S RQ Sbjct: 35 ILYKAVDKPLGMAINWGRLWSLWPVHIETACCSVEFGAASGPRYDVERFGIIEAFGSLRQ 94 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 D+++V GT+T KMA LR VYDQMPEP+YVI+MG+CA GG Y SY+V+ G D I+PV Sbjct: 95 CDLVVVQGTITRKMAPRLRLVYDQMPEPKYVIAMGACAITGGLYFDSYNVLPGIDGILPV 154 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVG 181 D+YVPGCPP E LI G LLLQ+KI+R+ Sbjct: 155 DVYVPGCPPRPETLIQGCLLLQEKIKRMK 183 >gi|291303411|ref|YP_003514689.1| NADH-quinone oxidoreductase subunit B [Stackebrandtia nassauensis DSM 44728] gi|290572631|gb|ADD45596.1| NADH-quinone oxidoreductase, B subunit [Stackebrandtia nassauensis DSM 44728] Length = 188 Score = 205 bits (521), Expect = 3e-51, Method: Composition-based stats. Identities = 78/142 (54%), Positives = 106/142 (74%), Gaps = 1/142 (0%) Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS-PRQSDV 95 G L + ++ W R SL FGLACCA+E + +SM R+D R G P A PRQ+D+ Sbjct: 15 GVLGEPIRFVLNWGRRYSLWVFNFGLACCAIEFIASSMGRHDFMRLGVIPFAHGPRQADL 74 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155 M+V+GT+T+KMA A++R+YDQMPEP+YVIS G+C+N GG Y SYSV +G D+++PVD+Y Sbjct: 75 MVVSGTVTDKMAPAIKRLYDQMPEPKYVISFGACSNSGGPYWDSYSVTKGVDQLIPVDVY 134 Query: 156 VPGCPPTAEALIYGILLLQKKI 177 VPGCPP EAL++GI+ LQ+KI Sbjct: 135 VPGCPPRPEALLHGIMRLQEKI 156 >gi|320532540|ref|ZP_08033350.1| NADH dehydrogenase subunit B [Actinomyces sp. oral taxon 171 str. F0337] gi|320135245|gb|EFW27383.1| NADH dehydrogenase subunit B [Actinomyces sp. oral taxon 171 str. F0337] Length = 204 Score = 205 bits (521), Expect = 3e-51, Method: Composition-based stats. Identities = 81/160 (50%), Positives = 117/160 (73%), Gaps = 2/160 (1%) Query: 21 KVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLE 80 K + + ++E+ GFL+T+V++L A+ S+ +T GLACCA+EMM A PR+D+ Sbjct: 14 KRNDPHAAAAAEVDSPGFLLTTVEKLAGLAQARSMWPVTMGLACCAIEMMAAGTPRFDMA 73 Query: 81 RFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS 139 RFG+ RASPR +DVMIV+G +++KMA +R VYD MPEP++VISMG+CA+ GG ++ Sbjct: 74 RFGWEVFRASPRHADVMIVSGRVSHKMAPIVRNVYDSMPEPKWVISMGACASSGGIFNN- 132 Query: 140 YSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179 Y+VV+GCD IVPVDIY+PGCPP E L+ +L L ++I + Sbjct: 133 YAVVQGCDHIVPVDIYLPGCPPRPEMLLNAMLELTRQIEK 172 >gi|294630833|ref|ZP_06709393.1| NADH dehydrogenase I, 20 kDa subunit [Streptomyces sp. e14] gi|292834166|gb|EFF92515.1| NADH dehydrogenase I, 20 kDa subunit [Streptomyces sp. e14] Length = 236 Score = 205 bits (521), Expect = 3e-51, Method: Composition-based stats. Identities = 82/170 (48%), Positives = 111/170 (65%), Gaps = 10/170 (5%) Query: 12 SGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQ 71 +G + K SR++ E + ++ W R SL FGLACCA+E + Sbjct: 26 AGPVALPEPKRLGVLSRLAPE---------PMKVVLNWGRRYSLWVFNFGLACCAIEFIA 76 Query: 72 ASMPRYDLERFGFAPR-ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCA 130 ASM R+D R G P PRQ+D+M+V+GT+T+KMA A++R+Y+QMPEP+YVIS G+C+ Sbjct: 77 ASMARHDFIRLGVIPFAPGPRQADLMVVSGTVTDKMAPAVKRLYEQMPEPKYVISFGACS 136 Query: 131 NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 N GG Y SYSV +G D+I+PVD+YVPGCPP EAL+ GIL LQ+KI Sbjct: 137 NCGGPYWDSYSVTKGVDQIIPVDVYVPGCPPRPEALLQGILKLQEKIAHE 186 >gi|302543406|ref|ZP_07295748.1| NADH dehydrogenase I, 20 kDa subunit [Streptomyces hygroscopicus ATCC 53653] gi|302461024|gb|EFL24117.1| NADH dehydrogenase I, 20 kDa subunit [Streptomyces himastatinicus ATCC 53653] Length = 241 Score = 205 bits (521), Expect = 3e-51, Method: Composition-based stats. Identities = 77/136 (56%), Positives = 102/136 (75%), Gaps = 1/136 (0%) Query: 46 LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR-ASPRQSDVMIVAGTLTN 104 ++ W R SL FGLACCA+E + ASM R+D R G P PRQ+D+M+V+GT+T+ Sbjct: 73 VLNWGRRYSLWVFNFGLACCAIEFIAASMARHDFIRLGVIPFAPGPRQADLMVVSGTVTD 132 Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164 KMA A++R+Y+QMPEP+YVIS G+C+N GG Y SY+V +G D+I+PVD+YVPGCPP E Sbjct: 133 KMAPAVKRLYEQMPEPKYVISFGACSNCGGPYWDSYAVTKGVDQIIPVDVYVPGCPPRPE 192 Query: 165 ALIYGILLLQKKIRRV 180 AL+ GIL LQ+KI R Sbjct: 193 ALLQGILKLQEKIARE 208 >gi|313126885|ref|YP_004037155.1| NADH dehydrogenase subunit b [Halogeometricum borinquense DSM 11551] gi|312293250|gb|ADQ67710.1| NADH dehydrogenase subunit B [Halogeometricum borinquense DSM 11551] Length = 236 Score = 205 bits (521), Expect = 3e-51, Method: Composition-based stats. Identities = 77/182 (42%), Positives = 113/182 (62%), Gaps = 11/182 (6%) Query: 7 NQKIISGQSSCSLEKVDADF----------SRISSEITHKGFLVTSVDQLVTWARTGSLM 56 NQ ++ + E DA S++ F++T D + W R S+ Sbjct: 6 NQPFVTDDTQVQTETRDARMTGSGADNRFNSKLREAFGSSPFILTKFDNFMNWVRGSSMF 65 Query: 57 WMTFGLACCAVEMMQASMPRYDLERFGF-APRASPRQSDVMIVAGTLTNKMASALRRVYD 115 + FG+ACC++EMM ++DL+RF PRASPRQ+DV+IV GT+ +K A ++RVYD Sbjct: 66 MLQFGIACCSIEMMHTYSVKHDLDRFAAGVPRASPRQADVIIVPGTIVSKFAPRMKRVYD 125 Query: 116 QMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175 QMPEP++V+ MGSC GG + Y+V++G + ++PVDI+VPGCPP EALIYG+ LQ+ Sbjct: 126 QMPEPKFVVGMGSCTVSGGPFQEGYNVIKGAEEVIPVDIHVPGCPPRPEALIYGVAKLQQ 185 Query: 176 KI 177 +I Sbjct: 186 RI 187 >gi|183599635|ref|ZP_02961128.1| hypothetical protein PROSTU_03122 [Providencia stuartii ATCC 25827] gi|188021887|gb|EDU59927.1| hypothetical protein PROSTU_03122 [Providencia stuartii ATCC 25827] Length = 224 Score = 205 bits (521), Expect = 3e-51, Method: Composition-based stats. Identities = 78/181 (43%), Positives = 111/181 (61%), Gaps = 3/181 (1%) Query: 3 LTTVNQKIISGQSSCSLEKVDAD-FSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFG 61 LT ++ + + +++ D + + G L ++ +V W R SL FG Sbjct: 5 LTRIDPNGENDRYPLQTQEIVTDPLEQQVKNSVYMGKLSHALHDVVNWGRKNSLWPYNFG 64 Query: 62 LACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 L+CC VEM+ + +D+ RFG RASPRQ+D M+VAGT KMA ++R+YDQM EP Sbjct: 65 LSCCYVEMVTSFTAVHDVARFGAEVLRASPRQADFMVVAGTCFTKMAPVIQRLYDQMLEP 124 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 ++VISMGSCAN GG Y YSVV+G D+ +PVD+Y+PGCPP EA + +LLLQ+ I + Sbjct: 125 KWVISMGSCANSGGMY-DIYSVVQGVDKFIPVDVYIPGCPPRPEAYMQALLLLQESIGKE 183 Query: 181 G 181 Sbjct: 184 R 184 >gi|104782522|ref|YP_609020.1| NADH dehydrogenase subunit B [Pseudomonas entomophila L48] gi|167034688|ref|YP_001669919.1| NADH dehydrogenase subunit B [Pseudomonas putida GB-1] gi|122402719|sp|Q1I7Z9|NUOB_PSEE4 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|238065197|sp|B0KMX9|NUOB_PSEPG RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|95111509|emb|CAK16229.1| NADH dehydrogenase I chain B [Pseudomonas entomophila L48] gi|166861176|gb|ABY99583.1| NADH-quinone oxidoreductase, B subunit [Pseudomonas putida GB-1] Length = 225 Score = 205 bits (521), Expect = 3e-51, Method: Composition-based stats. Identities = 75/175 (42%), Positives = 107/175 (61%), Gaps = 6/175 (3%) Query: 12 SGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQL----VTWARTGSLMWMTFGLACCAV 67 + + + + ++ + HK + ++ + V W R SL FGL+CC V Sbjct: 12 APNEQYPVGERETVTDQLLEDQVHKNIYMGKLEDVLRGAVNWGRKNSLWPYNFGLSCCYV 71 Query: 68 EMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISM 126 EM A +D+ RFG RASPRQ+D M++AGT KMA ++R+Y+QM EP++VISM Sbjct: 72 EMTTAFTAPHDIARFGAEVIRASPRQADFMVIAGTCFVKMAPIIQRLYEQMLEPKWVISM 131 Query: 127 GSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181 GSCAN GG Y YSVV+G D+ +PVD+YVPGCPP EA + G++LLQ+ I + Sbjct: 132 GSCANSGGMY-DIYSVVQGVDKFLPVDVYVPGCPPRPEAFLQGLMLLQESIGQER 185 >gi|322370548|ref|ZP_08045106.1| NADH-quinone oxidoreductase, B subunit [Haladaptatus paucihalophilus DX253] gi|320549965|gb|EFW91621.1| NADH-quinone oxidoreductase, B subunit [Haladaptatus paucihalophilus DX253] Length = 220 Score = 205 bits (521), Expect = 3e-51, Method: Composition-based stats. Identities = 77/160 (48%), Positives = 112/160 (70%), Gaps = 2/160 (1%) Query: 20 EKVDADF-SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78 E++ F S++ + F++T D + W R S+ + FG+ACC++EMM ++D Sbjct: 12 EELPGRFDSKLREALGTSPFILTKFDAFMNWVRGSSMFMLQFGIACCSIEMMHTYAVKHD 71 Query: 79 LERFGF-APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137 L+RFG PRASPRQ+DV+IV GT+ +K A ++RVYDQMPEP++V+SMGSC GG + Sbjct: 72 LDRFGAGVPRASPRQADVIIVPGTIVSKFAPRMKRVYDQMPEPKFVVSMGSCTCSGGPFQ 131 Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 Y+V++G + ++PVDI+VPGCPP EALIYGI LQ++I Sbjct: 132 QGYNVIKGAEEVIPVDIHVPGCPPRPEALIYGIAKLQERI 171 >gi|296103968|ref|YP_003614114.1| NADH dehydrogenase subunit B [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295058427|gb|ADF63165.1| NADH dehydrogenase subunit B [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295098074|emb|CBK87164.1| NADH dehydrogenase subunit B [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 224 Score = 204 bits (520), Expect = 3e-51, Method: Composition-based stats. Identities = 75/172 (43%), Positives = 107/172 (62%), Gaps = 5/172 (2%) Query: 14 QSSCSLEKVDADFSRISSEITHK---GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMM 70 L+K + + E+ G L ++ +V W R S+ FGL+CC VEM+ Sbjct: 14 NDRYPLQKQEIVTDPLEQEVNKSVYMGKLEHAMHDMVNWGRKNSIWPYNFGLSCCYVEMV 73 Query: 71 QASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSC 129 + +D+ RFG RASPRQ+D+M+VAGT KMA ++R+YDQM EP++VISMG+C Sbjct: 74 TSFTAVHDVARFGAEVLRASPRQADLMVVAGTCFTKMAPVIQRLYDQMLEPKWVISMGAC 133 Query: 130 ANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181 AN GG Y YSVV+G D+ +PVD+Y+PGCPP EA + ++LLQ+ I + Sbjct: 134 ANSGGMY-DIYSVVQGVDKFIPVDVYIPGCPPRPEAYMQALMLLQESIGKER 184 >gi|271962234|ref|YP_003336430.1| NADH dehydrogenase (quinone) [Streptosporangium roseum DSM 43021] gi|270505409|gb|ACZ83687.1| NADH dehydrogenase (quinone) [Streptosporangium roseum DSM 43021] Length = 173 Score = 204 bits (520), Expect = 3e-51, Method: Composition-based stats. Identities = 77/133 (57%), Positives = 104/133 (78%), Gaps = 1/133 (0%) Query: 46 LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS-PRQSDVMIVAGTLTN 104 ++ W R SL FGLACCA+E + +M R+D RFG P A+ PRQ+D+MIV+GT+T+ Sbjct: 23 ILNWGRRYSLWAFNFGLACCAIEFIATTMSRHDFIRFGVIPFANGPRQADLMIVSGTVTD 82 Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164 KMA A++R+Y+QMPEP+YVIS G+C+N GG Y SY V +G D+I+PVD+YVPGCPP E Sbjct: 83 KMAPAVKRLYEQMPEPKYVISFGACSNSGGPYWDSYCVTKGVDQIIPVDVYVPGCPPRPE 142 Query: 165 ALIYGILLLQKKI 177 AL++GI+LLQ+KI Sbjct: 143 ALLHGIMLLQEKI 155 >gi|161527785|ref|YP_001581611.1| NADH-quinone oxidoreductase subunit B [Nitrosopumilus maritimus SCM1] gi|160339086|gb|ABX12173.1| NADH-quinone oxidoreductase, B subunit [Nitrosopumilus maritimus SCM1] Length = 174 Score = 204 bits (520), Expect = 3e-51, Method: Composition-based stats. Identities = 78/152 (51%), Positives = 101/152 (66%), Gaps = 5/152 (3%) Query: 38 FLVTSVDQ----LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQ 92 L ++D+ + W R SL + ACC+VE AS PRYD+ERFG S RQ Sbjct: 21 ILEKAIDKPLGYAINWGRIWSLWPVHIETACCSVEFGAASSPRYDVERFGIIEAFGSLRQ 80 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 D+++V GT+T KMA LR VYDQMPEP+YVI+MG+CA GG Y SY+V+ G D ++PV Sbjct: 81 CDLVVVQGTITRKMAPRLRLVYDQMPEPKYVIAMGACAITGGLYFDSYNVLPGIDGVIPV 140 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 D+YVPGCPP E LI G +LLQ+KI+R+ K Sbjct: 141 DVYVPGCPPRPETLIQGCILLQEKIKRMKARK 172 >gi|71065152|ref|YP_263879.1| NADH dehydrogenase subunit B [Psychrobacter arcticus 273-4] gi|123649364|sp|Q4FU63|NUOB_PSYA2 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|71038137|gb|AAZ18445.1| NADH dehydrogenase I, B subunit [Psychrobacter arcticus 273-4] Length = 222 Score = 204 bits (520), Expect = 3e-51, Method: Composition-based stats. Identities = 83/184 (45%), Positives = 107/184 (58%), Gaps = 11/184 (5%) Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLV----TWARTGSLMWM 58 LT N + S D + +K + ++ LV W R SL Sbjct: 5 LTKANPDADVYPAQTSQTVNDP-----MEDEVNKNVFMGRLEDLVHSTANWGRKHSLWPF 59 Query: 59 TFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQM 117 FG +CC VE +DL RFG RASPRQ+DVMIVAGT KMA ++R+Y+QM Sbjct: 60 NFGTSCCYVEYATTLTAVHDLSRFGAEVIRASPRQADVMIVAGTCFVKMAPVIQRLYEQM 119 Query: 118 PEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 EP++VISMG+CAN GG Y YSVV+G D+I+PVD+YVPGCPP EALI G++LLQ+ I Sbjct: 120 LEPKWVISMGACANSGGMY-DIYSVVQGVDKIIPVDVYVPGCPPRPEALIQGLMLLQESI 178 Query: 178 RRVG 181 + Sbjct: 179 TKER 182 >gi|93005404|ref|YP_579841.1| NADH dehydrogenase subunit B [Psychrobacter cryohalolentis K5] gi|122415842|sp|Q1QD96|NUOB_PSYCK RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|92393082|gb|ABE74357.1| NADH-quinone oxidoreductase, B subunit [Psychrobacter cryohalolentis K5] Length = 222 Score = 204 bits (520), Expect = 3e-51, Method: Composition-based stats. Identities = 83/184 (45%), Positives = 107/184 (58%), Gaps = 11/184 (5%) Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLV----TWARTGSLMWM 58 LT N + S D + +K + ++ LV W R SL Sbjct: 5 LTKANPDADVYPAQTSQTVNDP-----MEDEVNKNVFMGRLEDLVHSTANWGRKHSLWPF 59 Query: 59 TFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQM 117 FG +CC VE +DL RFG RASPRQ+DVMIVAGT KMA ++R+Y+QM Sbjct: 60 NFGTSCCYVEYATTLTAVHDLSRFGAEVIRASPRQADVMIVAGTCFVKMAPVIQRLYEQM 119 Query: 118 PEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 EP++VISMG+CAN GG Y YSVV+G D+I+PVD+YVPGCPP EALI G++LLQ+ I Sbjct: 120 LEPKWVISMGACANSGGMY-DIYSVVQGVDKIIPVDVYVPGCPPRPEALIQGLMLLQESI 178 Query: 178 RRVG 181 + Sbjct: 179 TKER 182 >gi|320352991|ref|YP_004194330.1| NADH dehydrogenase subunit B [Desulfobulbus propionicus DSM 2032] gi|320121493|gb|ADW17039.1| NADH dehydrogenase subunit B [Desulfobulbus propionicus DSM 2032] Length = 165 Score = 204 bits (520), Expect = 3e-51, Method: Composition-based stats. Identities = 78/153 (50%), Positives = 105/153 (68%), Gaps = 4/153 (2%) Query: 29 ISSEITHKGFL-VTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-P 86 + EI + +D+L+ R SL MTFGLACCA+EMM RYD+ RFG Sbjct: 1 MGEEIVPSSIVQFAQLDKLLNLGRANSLWPMTFGLACCAIEMMCTGGSRYDISRFGAEVF 60 Query: 87 RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY--HYSYSVVR 144 R SPRQSDVMIVAGT+ K+ A++ +YDQMPEP++VI+MG+CA GG + +Y+VV Sbjct: 61 RPSPRQSDVMIVAGTINKKLELAVKTLYDQMPEPKWVIAMGNCAISGGPFKVKENYNVVE 120 Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 G D++ PVD+Y+PGCPP EAL+ GI+ L++KI Sbjct: 121 GADKLFPVDVYIPGCPPRPEALLEGIMALEEKI 153 >gi|146307436|ref|YP_001187901.1| NADH dehydrogenase subunit B [Pseudomonas mendocina ymp] gi|238065195|sp|A4XV03|NUOB_PSEMY RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|145575637|gb|ABP85169.1| NADH dehydrogenase subunit B [Pseudomonas mendocina ymp] Length = 225 Score = 204 bits (520), Expect = 3e-51, Method: Composition-based stats. Identities = 76/184 (41%), Positives = 112/184 (60%), Gaps = 8/184 (4%) Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQL----VTWARTGSLMWM 58 LT V+ + + + + + + + HK + ++++ + W R SL Sbjct: 5 LTRVDPN--APNEAYPIGQRELVSDPLLEDQVHKNIYMGKLEEVLNGAINWGRKNSLWPY 62 Query: 59 TFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQM 117 FGL+CC VEM A +D+ RFG RASPRQ+D M++AGT KMA ++R+Y+QM Sbjct: 63 NFGLSCCYVEMTTAFTAPHDVARFGAEVIRASPRQADFMVIAGTCFIKMAPVIQRLYEQM 122 Query: 118 PEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 EP++VISMGSCAN GG Y YSVV+G D+ +PVD+Y+PGCPP EA + G++LLQ+ I Sbjct: 123 LEPKWVISMGSCANSGGMY-DIYSVVQGVDKFLPVDVYIPGCPPRPEAFLQGLMLLQESI 181 Query: 178 RRVG 181 + Sbjct: 182 GQER 185 >gi|148653495|ref|YP_001280588.1| NADH dehydrogenase subunit B [Psychrobacter sp. PRwf-1] gi|238065199|sp|A5WG47|NUOB_PSYWF RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|148572579|gb|ABQ94638.1| NADH-quinone oxidoreductase, B subunit [Psychrobacter sp. PRwf-1] Length = 222 Score = 204 bits (520), Expect = 3e-51, Method: Composition-based stats. Identities = 80/184 (43%), Positives = 107/184 (58%), Gaps = 11/184 (5%) Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLV----TWARTGSLMWM 58 LT N + + + ++ + + ++ +V W R SL Sbjct: 5 LTRANPDADTYPAQTRQTVNNPIEDEVN-----RNVFMGKLEDMVHASANWGRKNSLWPF 59 Query: 59 TFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQM 117 FG +CC VE +DL RFG RASPRQ+DVMIVAGT KMA ++R+Y+QM Sbjct: 60 NFGTSCCYVEYATTLTAVHDLSRFGAEVIRASPRQADVMIVAGTCFVKMAPVIQRLYEQM 119 Query: 118 PEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 EP++VISMGSCAN GG Y YSVV+G D+I+PVD+YVPGCPP EALI G++LLQ+ I Sbjct: 120 LEPKWVISMGSCANSGGMY-DIYSVVQGVDKIIPVDVYVPGCPPRPEALIQGLMLLQESI 178 Query: 178 RRVG 181 + Sbjct: 179 TKER 182 >gi|253989001|ref|YP_003040357.1| NADH dehydrogenase subunit B [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253780451|emb|CAQ83613.1| nadh dehydrogenase i chain b (nadh-ubiquinone oxidoreductase chain 2 (nuo2) [Photorhabdus asymbiotica] Length = 224 Score = 204 bits (520), Expect = 4e-51, Method: Composition-based stats. Identities = 79/181 (43%), Positives = 111/181 (61%), Gaps = 3/181 (1%) Query: 3 LTTVNQKIISGQSSCSLEKVDAD-FSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFG 61 LT ++ + + +++ AD + + G L ++ LV W R SL FG Sbjct: 5 LTRIDPNGENDRYPLQKQEIVADPLEQHVHRSVYMGKLEHALHDLVNWGRKNSLWPYNFG 64 Query: 62 LACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 L+CC VEM + +D+ RFG RASPRQ+D M+VAGT KMA ++R+YDQM EP Sbjct: 65 LSCCYVEMATSFTAVHDVARFGAEVLRASPRQADFMVVAGTCFTKMAPVIQRLYDQMLEP 124 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 ++VISMG+CAN GG Y YSVV+G D+ +PVD+Y+PGCPP EA + +LLLQ+ I + Sbjct: 125 KWVISMGACANSGGMY-DIYSVVQGVDKFIPVDVYIPGCPPRPEAYMQALLLLQESIGKE 183 Query: 181 G 181 Sbjct: 184 R 184 >gi|170721056|ref|YP_001748744.1| NADH dehydrogenase subunit B [Pseudomonas putida W619] gi|238065198|sp|B1J6N3|NUOB_PSEPW RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|169759059|gb|ACA72375.1| NADH-quinone oxidoreductase, B subunit [Pseudomonas putida W619] Length = 225 Score = 204 bits (520), Expect = 4e-51, Method: Composition-based stats. Identities = 75/175 (42%), Positives = 107/175 (61%), Gaps = 6/175 (3%) Query: 12 SGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQL----VTWARTGSLMWMTFGLACCAV 67 + + + + ++ + HK + ++ + V W R SL FGL+CC V Sbjct: 12 APNEQYPVGERETVTDQLLEDQVHKNIYMGKLEDVLRGAVNWGRKNSLWPYNFGLSCCYV 71 Query: 68 EMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISM 126 EM A +D+ RFG RASPRQ+D M++AGT KMA ++R+Y+QM EP++VISM Sbjct: 72 EMTTAFTAPHDIARFGAEVIRASPRQADFMVIAGTCFIKMAPIIQRLYEQMLEPKWVISM 131 Query: 127 GSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181 GSCAN GG Y YSVV+G D+ +PVD+YVPGCPP EA + G++LLQ+ I + Sbjct: 132 GSCANSGGMY-DIYSVVQGVDKFLPVDVYVPGCPPRPEAFLQGLMLLQESIGQER 185 >gi|221136116|ref|XP_002171279.1| PREDICTED: similar to NADH dehydrogenase (ubiquinone) Fe-S protein 7 [Hydra magnipapillata] Length = 175 Score = 204 bits (520), Expect = 4e-51, Method: Composition-based stats. Identities = 67/150 (44%), Positives = 103/150 (68%), Gaps = 2/150 (1%) Query: 36 KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA-SPRQSD 94 +GF T +DQ+V AR SL + F +CC +E M YDL RFG + SPRQ+D Sbjct: 11 EGFFATKLDQVVGLARANSLWPLPFATSCCGIEFMATMASHYDLARFGSERVSFSPRQAD 70 Query: 95 VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154 +++V GT++ KMA LR+VY+QM EPR+VI++G+CA+ GG + +YSV++G D+++PVD+ Sbjct: 71 MLLVMGTISKKMAPILRQVYEQMSEPRWVIAVGACASSGGIF-DTYSVLQGIDKVIPVDV 129 Query: 155 YVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 YVPGCPP E ++ G++ LQ+ ++ + Sbjct: 130 YVPGCPPRPEQIVDGVMQLQELVKSESQRR 159 >gi|296140852|ref|YP_003648095.1| NADH-quinone oxidoreductase subunit beta [Tsukamurella paurometabola DSM 20162] gi|296028986|gb|ADG79756.1| NADH-quinone oxidoreductase, B subunit [Tsukamurella paurometabola DSM 20162] Length = 184 Score = 204 bits (520), Expect = 4e-51, Method: Composition-based stats. Identities = 76/148 (51%), Positives = 108/148 (72%), Gaps = 2/148 (1%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89 + GFL+++++ + +AR GSL TFGLACCA+EMM + PR+D+ RFG RAS Sbjct: 4 EDKVPGGFLLSTLETVAGYARKGSLWPATFGLACCAIEMMATTGPRFDIARFGMEAFRAS 63 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQ+D+MIVAG ++ KMA LR+VYDQM EP++V++MG CA+ GG ++ Y+VV+G D + Sbjct: 64 PRQADLMIVAGRVSQKMAPVLRQVYDQMAEPKWVLAMGVCASSGGMFNN-YAVVQGVDHV 122 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKI 177 VPVDIY+PGCPP E L+ ++ L K+ Sbjct: 123 VPVDIYLPGCPPRPEMLLNALIALHDKV 150 >gi|322369187|ref|ZP_08043752.1| NADH-quinone oxidoreductase, B subunit [Haladaptatus paucihalophilus DX253] gi|320550919|gb|EFW92568.1| NADH-quinone oxidoreductase, B subunit [Haladaptatus paucihalophilus DX253] Length = 211 Score = 204 bits (520), Expect = 4e-51, Method: Composition-based stats. Identities = 76/160 (47%), Positives = 114/160 (71%), Gaps = 2/160 (1%) Query: 20 EKVDADF-SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78 E VD F S++ F++T D+ + W R S+ + FG+ACC++EMM ++D Sbjct: 3 EGVDDRFNSKLREAFGASPFILTKFDKFMNWVRGSSMFMLQFGIACCSIEMMHTYAVKHD 62 Query: 79 LERFGF-APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137 L+RFG PRASPRQ+DVMIV GT+ +K A ++RVYDQMPEP++V++MGSCA GG + Sbjct: 63 LDRFGSGVPRASPRQADVMIVPGTVVSKFAPRMKRVYDQMPEPKFVVNMGSCAISGGPFQ 122 Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 Y+V++G + ++P+DI+VPGCPP EAL+YG++ LQ+++ Sbjct: 123 EGYNVIKGAEEVIPIDIHVPGCPPRPEALVYGVVKLQERV 162 >gi|291437889|ref|ZP_06577279.1| NADH dehydrogenase subunit NuoB2 [Streptomyces ghanaensis ATCC 14672] gi|291340784|gb|EFE67740.1| NADH dehydrogenase subunit NuoB2 [Streptomyces ghanaensis ATCC 14672] Length = 229 Score = 204 bits (520), Expect = 4e-51, Method: Composition-based stats. Identities = 78/136 (57%), Positives = 102/136 (75%), Gaps = 1/136 (0%) Query: 46 LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR-ASPRQSDVMIVAGTLTN 104 ++ W R SL FGLACCA+E + ASM R+D R G P PRQ+D+M+V+GT+T+ Sbjct: 46 VLNWGRRYSLWVFNFGLACCAIEFIAASMARHDFIRLGVIPFAPGPRQADLMVVSGTVTD 105 Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164 KMA A++R+Y+QMPEP+YVIS G+C+N GG Y SYSV +G D+I+PVD+YVPGCPP E Sbjct: 106 KMAPAVKRLYEQMPEPKYVISFGACSNCGGPYWDSYSVTKGVDQIIPVDVYVPGCPPRPE 165 Query: 165 ALIYGILLLQKKIRRV 180 AL+ GIL LQ+KI R Sbjct: 166 ALLQGILKLQEKIARE 181 >gi|82702143|ref|YP_411709.1| NADH dehydrogenase subunit B [Nitrosospira multiformis ATCC 25196] gi|123544779|sp|Q2YAA4|NUOB1_NITMU RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName: Full=NADH dehydrogenase I subunit B 1; AltName: Full=NDH-1 subunit B 1 gi|82410208|gb|ABB74317.1| NADH dehydrogenase subunit B [Nitrosospira multiformis ATCC 25196] Length = 221 Score = 204 bits (520), Expect = 4e-51, Method: Composition-based stats. Identities = 80/175 (45%), Positives = 105/175 (60%), Gaps = 2/175 (1%) Query: 8 QKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAV 67 K S + E + L+T + LV W R S+ FGL+CC V Sbjct: 6 SKPSDKPSGPATPGSSIIRDNGFEEDGRRSVLLTRLQDLVAWGRKNSVWPYNFGLSCCYV 65 Query: 68 EMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISM 126 EM + +YDL RFG RASPRQ+D+++++GT+ KMA L+R+YDQM EPR+VISM Sbjct: 66 EMATSFTSKYDLARFGSEVIRASPRQADLIVISGTVFIKMAPVLQRLYDQMLEPRWVISM 125 Query: 127 GSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181 GSCAN GG Y YSVV+G DR +PVD+YVPGCPP +A + G+ LLQ I + Sbjct: 126 GSCANSGGMY-DIYSVVQGVDRFLPVDVYVPGCPPRPDAFMQGLNLLQDAIGKEK 179 >gi|239929563|ref|ZP_04686516.1| NADH dehydrogenase I chain B [Streptomyces ghanaensis ATCC 14672] Length = 231 Score = 204 bits (520), Expect = 4e-51, Method: Composition-based stats. Identities = 78/136 (57%), Positives = 102/136 (75%), Gaps = 1/136 (0%) Query: 46 LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR-ASPRQSDVMIVAGTLTN 104 ++ W R SL FGLACCA+E + ASM R+D R G P PRQ+D+M+V+GT+T+ Sbjct: 48 VLNWGRRYSLWVFNFGLACCAIEFIAASMARHDFIRLGVIPFAPGPRQADLMVVSGTVTD 107 Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164 KMA A++R+Y+QMPEP+YVIS G+C+N GG Y SYSV +G D+I+PVD+YVPGCPP E Sbjct: 108 KMAPAVKRLYEQMPEPKYVISFGACSNCGGPYWDSYSVTKGVDQIIPVDVYVPGCPPRPE 167 Query: 165 ALIYGILLLQKKIRRV 180 AL+ GIL LQ+KI R Sbjct: 168 ALLQGILKLQEKIARE 183 >gi|118467443|ref|YP_886423.1| NADH dehydrogenase subunit B [Mycobacterium smegmatis str. MC2 155] gi|238065179|sp|A0QU35|NUOB_MYCS2 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|118168730|gb|ABK69626.1| NADH-quinone oxidoreductase, B subunit [Mycobacterium smegmatis str. MC2 155] Length = 184 Score = 204 bits (520), Expect = 4e-51, Method: Composition-based stats. Identities = 76/151 (50%), Positives = 109/151 (72%), Gaps = 2/151 (1%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89 E G L+++V+ + + R GSL TFGLACCA+EMM + PR+D+ RFG A+ Sbjct: 4 EERLPGGILLSTVETVAGYVRKGSLWPATFGLACCAIEMMSTAGPRFDIARFGMERFSAT 63 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQ+D+MIVAG ++ KMA LR++YDQM EP++V++MG CA+ GG ++ Y+VV+G D + Sbjct: 64 PRQADLMIVAGRVSQKMAPVLRQIYDQMVEPKWVLAMGVCASSGGMFNN-YAVVQGVDHV 122 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 VPVDIY+PGCPP E L++ IL L KI+++ Sbjct: 123 VPVDIYLPGCPPRPEMLLHAILKLHDKIQQM 153 >gi|15597834|ref|NP_251328.1| NADH dehydrogenase subunit B [Pseudomonas aeruginosa PAO1] gi|107102158|ref|ZP_01366076.1| hypothetical protein PaerPA_01003208 [Pseudomonas aeruginosa PACS2] gi|116050625|ref|YP_790556.1| NADH dehydrogenase subunit B [Pseudomonas aeruginosa UCBPP-PA14] gi|218891201|ref|YP_002440067.1| NADH dehydrogenase subunit B [Pseudomonas aeruginosa LESB58] gi|254235623|ref|ZP_04928946.1| NADH dehydrogenase I chain B [Pseudomonas aeruginosa C3719] gi|254241070|ref|ZP_04934392.1| NADH dehydrogenase I chain B [Pseudomonas aeruginosa 2192] gi|296388901|ref|ZP_06878376.1| NADH dehydrogenase subunit B [Pseudomonas aeruginosa PAb1] gi|313107676|ref|ZP_07793858.1| NADH dehydrogenase I chain B [Pseudomonas aeruginosa 39016] gi|81622300|sp|Q9I0K0|NUOB_PSEAE RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|122259748|sp|Q02ND0|NUOB_PSEAB RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|238065194|sp|B7VAR4|NUOB_PSEA8 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|9948706|gb|AAG06026.1|AE004692_5 NADH dehydrogenase I chain B [Pseudomonas aeruginosa PAO1] gi|115585846|gb|ABJ11861.1| NADH dehydrogenase I chain B [Pseudomonas aeruginosa UCBPP-PA14] gi|126167554|gb|EAZ53065.1| NADH dehydrogenase I chain B [Pseudomonas aeruginosa C3719] gi|126194448|gb|EAZ58511.1| NADH dehydrogenase I chain B [Pseudomonas aeruginosa 2192] gi|218771426|emb|CAW27193.1| NADH dehydrogenase I chain B [Pseudomonas aeruginosa LESB58] gi|310880360|gb|EFQ38954.1| NADH dehydrogenase I chain B [Pseudomonas aeruginosa 39016] Length = 225 Score = 204 bits (519), Expect = 4e-51, Method: Composition-based stats. Identities = 77/184 (41%), Positives = 110/184 (59%), Gaps = 8/184 (4%) Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQL----VTWARTGSLMWM 58 LT ++ + Q + + + + HK + ++ + V W R SL Sbjct: 5 LTRIDPDAANDQ--YPIGERETVADPLVEGQVHKNIFMGKLEDVLNSTVNWGRKNSLWPY 62 Query: 59 TFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQM 117 FGL+CC VEM A +D+ RFG RASPRQ+D M++AGT KMA ++R+Y+QM Sbjct: 63 NFGLSCCYVEMTTAFTAPHDIARFGAEVIRASPRQADFMVIAGTCFIKMAPVIQRLYEQM 122 Query: 118 PEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 EP++VISMGSCAN GG Y YSVV+G D+ +PVD+Y+PGCPP EA + G++LLQ+ I Sbjct: 123 LEPKWVISMGSCANSGGMY-DIYSVVQGVDKFLPVDVYIPGCPPRPEAFLQGLMLLQESI 181 Query: 178 RRVG 181 + Sbjct: 182 GQER 185 >gi|169634180|ref|YP_001707916.1| NADH dehydrogenase subunit B [Acinetobacter baumannii SDF] gi|169797057|ref|YP_001714850.1| NADH dehydrogenase subunit B [Acinetobacter baumannii AYE] gi|184157030|ref|YP_001845369.1| NADH dehydrogenase subunit B [Acinetobacter baumannii ACICU] gi|213156537|ref|YP_002318198.1| NADH dehydrogenase I chain B [Acinetobacter baumannii AB0057] gi|215484518|ref|YP_002326753.1| NAD(P)H-quinone oxidoreductase subunit K [Acinetobacter baumannii AB307-0294] gi|239501293|ref|ZP_04660603.1| NADH dehydrogenase subunit B [Acinetobacter baumannii AB900] gi|260555651|ref|ZP_05827871.1| NADH:ubiquinone oxidoreductase 20 kDa subunit [Acinetobacter baumannii ATCC 19606] gi|301347793|ref|ZP_07228534.1| NADH dehydrogenase subunit B [Acinetobacter baumannii AB056] gi|301510628|ref|ZP_07235865.1| NADH dehydrogenase subunit B [Acinetobacter baumannii AB058] gi|301595913|ref|ZP_07240921.1| NADH dehydrogenase subunit B [Acinetobacter baumannii AB059] gi|332852146|ref|ZP_08433973.1| NADH dehydrogenase I subunit B [Acinetobacter baumannii 6013150] gi|332867545|ref|ZP_08437698.1| NADH dehydrogenase I subunit B [Acinetobacter baumannii 6013113] gi|332872605|ref|ZP_08440573.1| NADH dehydrogenase I subunit B [Acinetobacter baumannii 6014059] gi|238065045|sp|B7GZC0|NUOB_ACIB3 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|238065046|sp|B7I740|NUOB_ACIB5 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|238065047|sp|B2HU42|NUOB_ACIBC RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|238065048|sp|B0VU55|NUOB_ACIBS RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|238065065|sp|B0V7U7|NUOB_ACIBY RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|238065077|sp|A3M2P9|NUOB_ACIBT RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|169149984|emb|CAM87878.1| NADH dehydrogenase I chain B [Acinetobacter baumannii AYE] gi|169152972|emb|CAP02018.1| NADH dehydrogenase I chain B [Acinetobacter baumannii] gi|183208624|gb|ACC56022.1| NADH:ubiquinone oxidoreductase 20 kD subunit [Acinetobacter baumannii ACICU] gi|193076535|gb|ABO11193.2| NADH dehydrogenase I chain B [Acinetobacter baumannii ATCC 17978] gi|213055697|gb|ACJ40599.1| NADH dehydrogenase I chain B [Acinetobacter baumannii AB0057] gi|213987919|gb|ACJ58218.1| NAD(P)H-quinone oxidoreductase subunit K [Acinetobacter baumannii AB307-0294] gi|260410562|gb|EEX03860.1| NADH:ubiquinone oxidoreductase 20 kDa subunit [Acinetobacter baumannii ATCC 19606] gi|322506929|gb|ADX02383.1| nuoB [Acinetobacter baumannii 1656-2] gi|323516796|gb|ADX91177.1| NADH dehydrogenase subunit B [Acinetobacter baumannii TCDC-AB0715] gi|332729518|gb|EGJ60857.1| NADH dehydrogenase I subunit B [Acinetobacter baumannii 6013150] gi|332733962|gb|EGJ65107.1| NADH dehydrogenase I subunit B [Acinetobacter baumannii 6013113] gi|332739134|gb|EGJ69993.1| NADH dehydrogenase I subunit B [Acinetobacter baumannii 6014059] Length = 225 Score = 204 bits (519), Expect = 5e-51, Method: Composition-based stats. Identities = 81/181 (44%), Positives = 108/181 (59%), Gaps = 11/181 (6%) Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQL----VTWARTGSLMWM 58 LT N L+ + E+ +K +T ++ + V W R SL Sbjct: 5 LTRANP----DADQYPLQDRQIVTDPLEEEV-NKNVFMTRLEDVLHTAVNWGRKNSLWPF 59 Query: 59 TFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQM 117 FG +CC VE +DL RFG RASPRQ+D+MIVAGT KMA ++R+Y+QM Sbjct: 60 NFGTSCCYVEYATTLTGVHDLSRFGAEVIRASPRQADLMIVAGTCFVKMAPVIQRLYEQM 119 Query: 118 PEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 EP++VISMG+CAN GG Y YSVV+G D+I+PVD+YVPGCPP EALI ++LLQ +I Sbjct: 120 LEPKWVISMGACANSGGMY-DIYSVVQGVDKIIPVDVYVPGCPPRPEALIQALMLLQDQI 178 Query: 178 R 178 + Sbjct: 179 Q 179 >gi|302521251|ref|ZP_07273593.1| NADH dehydrogenase subunit NuoB2 [Streptomyces sp. SPB78] gi|302430146|gb|EFL01962.1| NADH dehydrogenase subunit NuoB2 [Streptomyces sp. SPB78] Length = 243 Score = 204 bits (519), Expect = 5e-51, Method: Composition-based stats. Identities = 81/181 (44%), Positives = 112/181 (61%), Gaps = 10/181 (5%) Query: 1 MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTF 60 + T V + + SR++ + + ++ W R SL F Sbjct: 45 VPTTAVPAPVDLPDPTAPPAGTTGVLSRLAPQ---------PMKVVLNWGRRYSLWVFNF 95 Query: 61 GLACCAVEMMQASMPRYDLERFGFAPR-ASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119 GLACCA+E + ASM R+D R G P PRQ+D+M+V+GT+T+KMA A++R+Y+QMPE Sbjct: 96 GLACCAIEFIAASMSRHDFIRLGVIPFAPGPRQADLMVVSGTVTDKMAPAVKRLYEQMPE 155 Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179 P+YVIS G+C+N GG Y SYSV +G D+I+PVD+YVPGCPP EAL+ GIL LQ+KI Sbjct: 156 PKYVISFGACSNCGGPYWDSYSVTKGVDQIIPVDVYVPGCPPRPEALLQGILKLQEKIAH 215 Query: 180 V 180 Sbjct: 216 E 216 >gi|296130550|ref|YP_003637800.1| NADH-quinone oxidoreductase, B subunit [Cellulomonas flavigena DSM 20109] gi|296022365|gb|ADG75601.1| NADH-quinone oxidoreductase, B subunit [Cellulomonas flavigena DSM 20109] Length = 183 Score = 204 bits (519), Expect = 5e-51, Method: Composition-based stats. Identities = 81/148 (54%), Positives = 108/148 (72%), Gaps = 2/148 (1%) Query: 32 EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASP 90 E GFL+T+V+ LV + R SL +TFGLACCA+EMM A RYD+ R G RASP Sbjct: 4 EEAPSGFLLTTVEDLVGYFRKASLWPVTFGLACCAIEMMAAGTSRYDISRLGMEVFRASP 63 Query: 91 RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150 RQSD+MIVAG ++ KMA +R+VYDQM P++V+SMG CA+ GG ++ Y++V+G D IV Sbjct: 64 RQSDLMIVAGRVSQKMAPIVRQVYDQMAGPKWVLSMGVCASSGGMFNN-YAIVQGVDHIV 122 Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIR 178 PVDIY+PGCPP E L++ IL L ++I+ Sbjct: 123 PVDIYLPGCPPRPEMLLHAILALHQQIQ 150 >gi|23092541|gb|AAN08352.1| NADH dehydrogenase I subunit B [Photorhabdus temperata subsp. temperata] Length = 224 Score = 204 bits (519), Expect = 5e-51, Method: Composition-based stats. Identities = 78/181 (43%), Positives = 111/181 (61%), Gaps = 3/181 (1%) Query: 3 LTTVNQKIISGQSSCSLEKVDAD-FSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFG 61 LT ++ + + +++ AD + + G L ++ LV W R SL FG Sbjct: 5 LTRIDPNGENDRYPLQKQEIVADPLEQHVHRSVYMGKLEHALHDLVNWGRKNSLWPYNFG 64 Query: 62 LACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 L+CC VEM + +D+ RFG RASPRQ+D M+VAGT KMA ++R+YDQM EP Sbjct: 65 LSCCYVEMATSFTAVHDVARFGAEVLRASPRQADFMVVAGTCFTKMAPVIQRLYDQMLEP 124 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 ++VISMG+CAN GG Y YSVV+G D+ +PVD+Y+PGCPP EA + ++LLQ+ I + Sbjct: 125 KWVISMGACANSGGMY-DIYSVVQGVDKFIPVDVYIPGCPPRPEAYMQALMLLQESIGKE 183 Query: 181 G 181 Sbjct: 184 R 184 >gi|152988699|ref|YP_001347933.1| NADH dehydrogenase subunit B [Pseudomonas aeruginosa PA7] gi|238065193|sp|A6V4E8|NUOB_PSEA7 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|150963857|gb|ABR85882.1| NADH dehydrogenase I chain B [Pseudomonas aeruginosa PA7] Length = 225 Score = 204 bits (519), Expect = 5e-51, Method: Composition-based stats. Identities = 77/184 (41%), Positives = 110/184 (59%), Gaps = 8/184 (4%) Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQL----VTWARTGSLMWM 58 LT ++ + Q + + + + HK + ++ + V W R SL Sbjct: 5 LTRIDPDAANDQ--YPIGERETVADPLVEGQVHKNIFMGKLEDVLNSTVNWGRKNSLWPY 62 Query: 59 TFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQM 117 FGL+CC VEM A +D+ RFG RASPRQ+D M++AGT KMA ++R+Y+QM Sbjct: 63 NFGLSCCYVEMTTAFTAPHDIARFGAEVIRASPRQADFMVIAGTCFIKMAPVIQRLYEQM 122 Query: 118 PEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 EP++VISMGSCAN GG Y YSVV+G D+ +PVD+Y+PGCPP EA + G++LLQ+ I Sbjct: 123 LEPKWVISMGSCANSGGMY-DIYSVVQGVDKFLPVDVYIPGCPPRPEAFLQGLMLLQESI 181 Query: 178 RRVG 181 + Sbjct: 182 GQER 185 >gi|294496248|ref|YP_003542741.1| F420H2 dehydrogenase subunit B [Methanohalophilus mahii DSM 5219] gi|292667247|gb|ADE37096.1| F420H2 dehydrogenase subunit B [Methanohalophilus mahii DSM 5219] Length = 191 Score = 204 bits (519), Expect = 5e-51, Method: Composition-based stats. Identities = 69/150 (46%), Positives = 95/150 (63%) Query: 29 ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88 +S+ +K T + W R SL +M + CC VE++ M D +RFG PR Sbjct: 31 TTSQEINKFLQKTKAQDFINWGRKNSLWFMAQAMGCCGVEIIVTGMSPMDTDRFGIIPRN 90 Query: 89 SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 148 SPRQ+DVMI++G +T K AL+++YDQMP P++VI MG C+ GG ++ SYS V+ D Sbjct: 91 SPRQADVMIISGYVTKKYLPALKKLYDQMPSPKWVICMGDCSISGGPFYESYSTVQNIDE 150 Query: 149 IVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 I PVD+++PGCPP EALI G L +QKKI Sbjct: 151 IFPVDVFIPGCPPRPEALIQGFLEIQKKIE 180 >gi|146312473|ref|YP_001177547.1| NADH dehydrogenase subunit B [Enterobacter sp. 638] gi|238065140|sp|A4WCR6|NUOB_ENT38 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|145319349|gb|ABP61496.1| NADH dehydrogenase subunit B [Enterobacter sp. 638] Length = 224 Score = 204 bits (519), Expect = 5e-51, Method: Composition-based stats. Identities = 76/172 (44%), Positives = 106/172 (61%), Gaps = 5/172 (2%) Query: 14 QSSCSLEKVDADFSRISSEITHK---GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMM 70 L+K + + EI G L ++ +V W R S+ FGL+CC VEM+ Sbjct: 14 NDRYPLQKQEIVTDPLEQEINKSVYMGKLEHAMHDMVNWGRKNSIWPYNFGLSCCYVEMV 73 Query: 71 QASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSC 129 + +D+ RFG RASPRQ+D+M+VAGT KMA ++R+YDQM EP++VISMG+C Sbjct: 74 TSFTAVHDVARFGAEVLRASPRQADLMVVAGTCFTKMAPVIQRLYDQMLEPKWVISMGAC 133 Query: 130 ANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181 AN GG Y YSVV+G D+ +PVD+Y+PGCPP EA + ++LLQ I + Sbjct: 134 ANSGGMY-DIYSVVQGVDKFIPVDVYIPGCPPRPEAYMQALMLLQDSIGKER 184 >gi|320095549|ref|ZP_08027213.1| NADH-quinone oxidoreductase subunit B [Actinomyces sp. oral taxon 178 str. F0338] gi|319977527|gb|EFW09206.1| NADH-quinone oxidoreductase subunit B [Actinomyces sp. oral taxon 178 str. F0338] Length = 184 Score = 204 bits (519), Expect = 5e-51, Method: Composition-based stats. Identities = 81/151 (53%), Positives = 113/151 (74%), Gaps = 2/151 (1%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89 E G +TSV++++ AR S +T GLACCA+EMM A PR+D+ RFG RAS Sbjct: 4 EESLPAGIALTSVEKVLGLARKHSQWPVTMGLACCAIEMMAAGTPRFDMARFGLEVFRAS 63 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PR SD+MIV+G +++KMA +RRVYD MPEP++VISMG+CA+ GG ++ Y+VV+GCD I Sbjct: 64 PRHSDLMIVSGRVSHKMAPIIRRVYDSMPEPKWVISMGACASSGGVFNN-YAVVQGCDHI 122 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 VPVD+Y+PGCPP EALI+ +L+L+++I + Sbjct: 123 VPVDVYLPGCPPRPEALIHAVLVLREQIGKE 153 >gi|148699632|gb|EDL31579.1| NADH dehydrogenase (ubiquinone) Fe-S protein 7, isoform CRA_a [Mus musculus] Length = 199 Score = 204 bits (519), Expect = 5e-51, Method: Composition-based stats. Identities = 96/124 (77%), Positives = 107/124 (86%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93 + ++VT +D L+ WAR SL MTFGLACCAVEMM + PRYD++RFG RASPRQ+ Sbjct: 69 SRAEYVVTKLDDLINWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQA 128 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD 153 DVMIVAGTLTNKMA ALR+VYDQMPEPRYV+SMGSCANGGGYYHYSYSVVRGCDRIVPVD Sbjct: 129 DVMIVAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPVD 188 Query: 154 IYVP 157 IYVP Sbjct: 189 IYVP 192 >gi|262369334|ref|ZP_06062662.1| NADH dehydrogenase subunit I B [Acinetobacter johnsonii SH046] gi|262315402|gb|EEY96441.1| NADH dehydrogenase subunit I B [Acinetobacter johnsonii SH046] Length = 225 Score = 204 bits (519), Expect = 6e-51, Method: Composition-based stats. Identities = 79/181 (43%), Positives = 109/181 (60%), Gaps = 11/181 (6%) Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQL----VTWARTGSLMWM 58 LT N L++ + E+ +K +T ++ + V W R S+ Sbjct: 5 LTRANP----DADQYPLQERQIVTDPLEEEV-NKNVFMTRLEDVAHTAVNWGRKNSVWPF 59 Query: 59 TFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQM 117 FG +CC VE +DL RFG RASPRQ+D+MIVAGT KMA ++R+Y+QM Sbjct: 60 NFGTSCCYVEYATTLTGVHDLSRFGAEVIRASPRQADLMIVAGTCFVKMAPVIQRLYEQM 119 Query: 118 PEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 EP++VISMG+CAN GG Y YSVV+G D+I+PVD+Y+PGCPP EALI ++LLQ +I Sbjct: 120 LEPKWVISMGACANSGGMY-DIYSVVQGVDKIIPVDVYIPGCPPRPEALIQALMLLQDQI 178 Query: 178 R 178 + Sbjct: 179 Q 179 >gi|268317701|ref|YP_003291420.1| NADH-quinone oxidoreductase, B subunit [Rhodothermus marinus DSM 4252] gi|262335235|gb|ACY49032.1| NADH-quinone oxidoreductase, B subunit [Rhodothermus marinus DSM 4252] Length = 194 Score = 204 bits (519), Expect = 6e-51, Method: Composition-based stats. Identities = 80/151 (52%), Positives = 111/151 (73%), Gaps = 2/151 (1%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQ 92 +GFL T +D L+ WAR+ SLM M GLACCA+EMM + P+YD+ RFG R SPRQ Sbjct: 4 LREGFLTTRLDVLLNWARSNSLMPMPMGLACCAIEMMAFAGPKYDVARFGSEAMRFSPRQ 63 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 +D+MIVAG + KMA A+RRV+DQMP+P++ I+MG+CA+ GG H Y VV+G D +PV Sbjct: 64 ADLMIVAGWCSYKMAHAIRRVWDQMPDPKWCIAMGACASTGGM-HRCYGVVQGVDNFLPV 122 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 D+Y+PGCPP EA+++ ++ +Q+KIR +V Sbjct: 123 DVYIPGCPPRPEAVLHALMDIQEKIRNEYSV 153 >gi|317123870|ref|YP_004097982.1| NADH dehydrogenase subunit B [Intrasporangium calvum DSM 43043] gi|315587958|gb|ADU47255.1| NADH dehydrogenase subunit B [Intrasporangium calvum DSM 43043] Length = 221 Score = 204 bits (519), Expect = 6e-51, Method: Composition-based stats. Identities = 78/142 (54%), Positives = 102/142 (71%), Gaps = 1/142 (0%) Query: 41 TSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR-ASPRQSDVMIVA 99 + L+ W R SL FGLACCA+E + SM R+D R G P PRQ+D+MIV+ Sbjct: 28 KPIKVLLNWGRRYSLWVFNFGLACCAIEFIATSMARHDFMRLGVIPFAPGPRQADLMIVS 87 Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGC 159 GT+T+KMA A+RR+YDQMPEP+YVIS G+CAN GG Y SYSV +G D ++PVD+YVPGC Sbjct: 88 GTVTDKMAPAIRRLYDQMPEPKYVISFGACANSGGPYWDSYSVTKGVDTVIPVDVYVPGC 147 Query: 160 PPTAEALIYGILLLQKKIRRVG 181 PP EAL++GI+ LQ++I + Sbjct: 148 PPRPEALLHGIIRLQEQIAQER 169 >gi|154508638|ref|ZP_02044280.1| hypothetical protein ACTODO_01139 [Actinomyces odontolyticus ATCC 17982] gi|293191717|ref|ZP_06609274.1| NADH dehydrogenase I subunit B [Actinomyces odontolyticus F0309] gi|153798272|gb|EDN80692.1| hypothetical protein ACTODO_01139 [Actinomyces odontolyticus ATCC 17982] gi|292820489|gb|EFF79471.1| NADH dehydrogenase I subunit B [Actinomyces odontolyticus F0309] Length = 184 Score = 204 bits (519), Expect = 6e-51, Method: Composition-based stats. Identities = 80/151 (52%), Positives = 113/151 (74%), Gaps = 2/151 (1%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89 E G +TSV++++ AR S +T GLACCA+EMM A PR+D+ RFG RAS Sbjct: 4 EESLPAGIALTSVEKVLGLARKYSQWPVTMGLACCAIEMMAAGTPRFDMARFGLEVFRAS 63 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PR +D+MIV+G +++KMA +RRVYD MPEP++VISMG+CA+ GG ++ Y+VV+GCD I Sbjct: 64 PRHADMMIVSGRVSHKMAPIIRRVYDSMPEPKWVISMGACASSGGVFNN-YAVVQGCDHI 122 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 VPVD+Y+PGCPP EALI+ +L+L+++I + Sbjct: 123 VPVDVYLPGCPPRPEALIHAVLVLREQIGKE 153 >gi|329938298|ref|ZP_08287749.1| NADH dehydrogenase subunit NuoB2 [Streptomyces griseoaurantiacus M045] gi|329302787|gb|EGG46677.1| NADH dehydrogenase subunit NuoB2 [Streptomyces griseoaurantiacus M045] Length = 308 Score = 204 bits (518), Expect = 6e-51, Method: Composition-based stats. Identities = 76/136 (55%), Positives = 102/136 (75%), Gaps = 1/136 (0%) Query: 46 LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR-ASPRQSDVMIVAGTLTN 104 ++ W R SL FGLACCA+E + ASM R+D R G P PRQ+D+M+V+GT+T+ Sbjct: 75 VLNWGRRYSLWVFNFGLACCAIEFIAASMSRHDFMRLGVIPFAPGPRQADLMVVSGTVTD 134 Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164 KMA A++R+Y+QMPEP+YVIS G+C+N GG Y SY+V +G D+I+PVD+YVPGCPP E Sbjct: 135 KMAPAVKRLYEQMPEPKYVISFGACSNCGGPYWDSYAVTKGVDQIIPVDVYVPGCPPRPE 194 Query: 165 ALIYGILLLQKKIRRV 180 AL+ GI+ LQ+KI R Sbjct: 195 ALLQGIIKLQEKIARE 210 >gi|261340675|ref|ZP_05968533.1| NADH dehydrogenase I subunit B [Enterobacter cancerogenus ATCC 35316] gi|288317089|gb|EFC56027.1| NADH dehydrogenase I subunit B [Enterobacter cancerogenus ATCC 35316] Length = 224 Score = 204 bits (518), Expect = 6e-51, Method: Composition-based stats. Identities = 75/172 (43%), Positives = 107/172 (62%), Gaps = 5/172 (2%) Query: 14 QSSCSLEKVDADFSRISSEITHK---GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMM 70 L+K + + E+ G L ++ +V W R S+ FGL+CC VEM+ Sbjct: 14 NDRYPLQKQEIVTDPLEQEVNKSVYMGKLEHAMHDMVNWGRKNSIWPYNFGLSCCYVEMV 73 Query: 71 QASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSC 129 + +D+ RFG RASPRQ+D+M+VAGT KMA ++R+YDQM EP++VISMG+C Sbjct: 74 TSFTAVHDVARFGAEVLRASPRQADLMVVAGTCFTKMAPVIQRLYDQMLEPKWVISMGAC 133 Query: 130 ANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181 AN GG Y YSVV+G D+ +PVD+Y+PGCPP EA + ++LLQ+ I + Sbjct: 134 ANSGGMY-DIYSVVQGVDKFIPVDVYIPGCPPRPEAYMQALMLLQESIGKER 184 >gi|293395171|ref|ZP_06639457.1| NADH dehydrogenase I subunit B [Serratia odorifera DSM 4582] gi|291422348|gb|EFE95591.1| NADH dehydrogenase I subunit B [Serratia odorifera DSM 4582] Length = 224 Score = 204 bits (518), Expect = 6e-51, Method: Composition-based stats. Identities = 77/181 (42%), Positives = 112/181 (61%), Gaps = 3/181 (1%) Query: 3 LTTVNQKIISGQSSCSLEKVDAD-FSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFG 61 LT ++ + + +++ AD + + G L ++ +V W R SL FG Sbjct: 5 LTRIDPNGENDRYPLQQQEIVADPLEQQVHRTVYMGKLEHALHDMVNWGRKNSLWPYNFG 64 Query: 62 LACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 L+CC VEM+ + +D+ RFG RASPRQ+D M+VAGT KMA ++R+Y+QM EP Sbjct: 65 LSCCYVEMVTSFTAVHDVARFGAEVLRASPRQADFMVVAGTCFTKMAPVIQRLYEQMLEP 124 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 ++VISMG+CAN GG Y YSVV+G D+ +PVD+Y+PGCPP EA + +LLLQ+ I + Sbjct: 125 KWVISMGACANSGGMY-DIYSVVQGVDKFLPVDVYIPGCPPRPEAYMQALLLLQESIGKE 183 Query: 181 G 181 Sbjct: 184 R 184 >gi|227497895|ref|ZP_03928075.1| NADH dehydrogenase (quinone) [Actinomyces urogenitalis DSM 15434] gi|226832687|gb|EEH65070.1| NADH dehydrogenase (quinone) [Actinomyces urogenitalis DSM 15434] Length = 209 Score = 204 bits (518), Expect = 6e-51, Method: Composition-based stats. Identities = 82/158 (51%), Positives = 113/158 (71%), Gaps = 2/158 (1%) Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-P 86 + + GFL+TSV++L A+ SL +T GLACCA+EMM + PR+DL RFG+ Sbjct: 26 QAEESVEGPGFLLTSVEKLSALAQARSLWPVTMGLACCAIEMMATAAPRFDLSRFGWEVF 85 Query: 87 RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGC 146 RASPR +DVM+V+G +++KMA +R VYD MPEP++VISMG+CA+ GG ++ Y++V+GC Sbjct: 86 RASPRHADVMLVSGRVSHKMAPIVRNVYDAMPEPKWVISMGACASSGGIFNN-YAIVQGC 144 Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 D IVPVDIY+PGCPP E LI +L L ++I R K Sbjct: 145 DHIVPVDIYLPGCPPRPEMLINAMLELTRQIERRPVFK 182 >gi|259907928|ref|YP_002648284.1| NADH dehydrogenase subunit B [Erwinia pyrifoliae Ep1/96] gi|224963550|emb|CAX55040.1| NADH dehydrogenase I chain B [Erwinia pyrifoliae Ep1/96] gi|283477809|emb|CAY73725.1| NADH dehydrogenase I chain B [Erwinia pyrifoliae DSM 12163] Length = 224 Score = 204 bits (518), Expect = 7e-51, Method: Composition-based stats. Identities = 76/172 (44%), Positives = 104/172 (60%), Gaps = 5/172 (2%) Query: 14 QSSCSLEKVDADFSRISSEITHK---GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMM 70 L+K + + + G L ++ +V W R SL FGL+CC VEM Sbjct: 14 NDRYPLQKQEIVTDPLEKHVHQNVYMGKLEHALHDMVNWGRKNSLWPFNFGLSCCYVEMT 73 Query: 71 QASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSC 129 + +D+ RFG RASPRQ+D M+VAGT KMA ++R+YDQM EP++VISMG+C Sbjct: 74 TSFTAVHDVARFGSEVIRASPRQADFMVVAGTCFTKMAPVIQRLYDQMLEPKWVISMGAC 133 Query: 130 ANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181 AN GG Y YSVV+G D+ +PVD+Y+PGCPP EA + +LLLQ+ I + Sbjct: 134 ANSGGMY-DIYSVVQGVDKFLPVDVYIPGCPPRPEAYMQALLLLQESIGKER 184 >gi|310768164|gb|ADP13114.1| NADH dehydrogenase subunit B [Erwinia sp. Ejp617] Length = 224 Score = 204 bits (518), Expect = 7e-51, Method: Composition-based stats. Identities = 76/172 (44%), Positives = 104/172 (60%), Gaps = 5/172 (2%) Query: 14 QSSCSLEKVDADFSRISSEITHK---GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMM 70 L+K + + + G L ++ +V W R SL FGL+CC VEM Sbjct: 14 NDRYPLQKQEIVTDPLEKHVHQNVYMGKLEHALHDMVNWGRKNSLWPFNFGLSCCYVEMT 73 Query: 71 QASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSC 129 + +D+ RFG RASPRQ+D M+VAGT KMA ++R+YDQM EP++VISMG+C Sbjct: 74 TSFTAVHDVARFGSEVIRASPRQADFMVVAGTCFTKMAPVVQRLYDQMLEPKWVISMGAC 133 Query: 130 ANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181 AN GG Y YSVV+G D+ +PVD+Y+PGCPP EA + +LLLQ+ I + Sbjct: 134 ANSGGMY-DIYSVVQGVDKFLPVDVYIPGCPPRPEAYMQALLLLQESIGKER 184 >gi|330881187|gb|EGH15336.1| NADH dehydrogenase subunit B [Pseudomonas syringae pv. glycinea str. race 4] Length = 224 Score = 203 bits (517), Expect = 8e-51, Method: Composition-based stats. Identities = 75/175 (42%), Positives = 106/175 (60%), Gaps = 7/175 (4%) Query: 12 SGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQL----VTWARTGSLMWMTFGLACCAV 67 + + K + + ++ HK + ++ + V W R SL FGL+CC V Sbjct: 12 APNEQYPIGKRETVSDPLEDQV-HKNIYMGKLEDVLNGAVNWGRKNSLWPYNFGLSCCYV 70 Query: 68 EMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISM 126 EM A +D+ RFG R SPRQ+D M++AGT KMA ++R+Y+QM EP++VISM Sbjct: 71 EMTTAFTAPHDIARFGAEVIRGSPRQADFMVIAGTCFIKMAPIIQRLYEQMLEPKWVISM 130 Query: 127 GSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181 GSCAN GG Y YSVV+G D+ +PVD+YVPGCPP EA + G++LLQ+ I + Sbjct: 131 GSCANSGGMY-DIYSVVQGVDKFLPVDVYVPGCPPRPEAFLQGLMLLQESIGKER 184 >gi|111220500|ref|YP_711294.1| NADH dehydrogenase subunit B [Frankia alni ACN14a] gi|111148032|emb|CAJ59698.1| NADH dehydrogenase subunit [Frankia alni ACN14a] Length = 271 Score = 203 bits (517), Expect = 8e-51, Method: Composition-based stats. Identities = 79/141 (56%), Positives = 104/141 (73%), Gaps = 2/141 (1%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQSDVM 96 L+ SV++L W+R SL TFGLACCA+EMM RYDL RFG RASPRQ+D+M Sbjct: 1 MLLASVEKLANWSRRSSLWPATFGLACCAIEMMSTGAGRYDLSRFGMEVFRASPRQADLM 60 Query: 97 IVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV 156 IVAG ++ KMA LR++YDQMPEP++V+SMG CA+ GG ++ Y++V+G D IVPVD+Y+ Sbjct: 61 IVAGRVSQKMAPVLRQIYDQMPEPKWVLSMGVCASSGGMFNN-YAIVQGVDHIVPVDMYL 119 Query: 157 PGCPPTAEALIYGILLLQKKI 177 PGCPP E L+ I+ L +KI Sbjct: 120 PGCPPRPEMLMDAIIKLHEKI 140 >gi|330503270|ref|YP_004380139.1| NADH dehydrogenase subunit B [Pseudomonas mendocina NK-01] gi|328917556|gb|AEB58387.1| NADH dehydrogenase subunit B [Pseudomonas mendocina NK-01] Length = 225 Score = 203 bits (517), Expect = 8e-51, Method: Composition-based stats. Identities = 77/184 (41%), Positives = 110/184 (59%), Gaps = 8/184 (4%) Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQL----VTWARTGSLMWM 58 LT V+ + + + + + + + HK + + + V W R SL Sbjct: 5 LTRVDPN--APNEAYPIGQREVVSDPLLEDQVHKNIYMGKLSDVLNGAVNWGRKNSLWPY 62 Query: 59 TFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQM 117 FGL+CC VEM A +D+ RFG RASPRQ+D M++AGT KMA ++R+Y+QM Sbjct: 63 NFGLSCCYVEMTTAFTAPHDVARFGAEVIRASPRQADFMVIAGTCFIKMAPVIQRLYEQM 122 Query: 118 PEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 EP++VISMGSCAN GG Y YSVV+G D+ +PVD+Y+PGCPP EA + G++LLQ+ I Sbjct: 123 LEPKWVISMGSCANSGGMY-DIYSVVQGVDKFLPVDVYIPGCPPRPEAFLQGLMLLQESI 181 Query: 178 RRVG 181 + Sbjct: 182 GQER 185 >gi|303248401|ref|ZP_07334661.1| NADH dehydrogenase I, D subunit [Desulfovibrio fructosovorans JJ] gi|302490199|gb|EFL50117.1| NADH dehydrogenase I, D subunit [Desulfovibrio fructosovorans JJ] Length = 790 Score = 203 bits (517), Expect = 8e-51, Method: Composition-based stats. Identities = 76/140 (54%), Positives = 100/140 (71%), Gaps = 2/140 (1%) Query: 39 LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQSDVMI 97 + + D ++ WAR SL FGL+CC VE A PRYD+ R+G R SPRQ+DV+I Sbjct: 8 VFSPTDHIINWARKNSLWPFFFGLSCCFVEEATAWGPRYDIARYGSEVFRGSPRQADVLI 67 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 V+GT+ K+A R+Y+QM +P++VISMGSC+N GG Y YSVV+G D+I+PVD+Y+P Sbjct: 68 VSGTMFKKIAPVALRLYEQMSDPKWVISMGSCSNSGGMY-DVYSVVQGSDQILPVDVYIP 126 Query: 158 GCPPTAEALIYGILLLQKKI 177 GCPP EAL G+LLLQKKI Sbjct: 127 GCPPRPEALFDGLLLLQKKI 146 >gi|256396791|ref|YP_003118355.1| NADH-quinone oxidoreductase subunit beta [Catenulispora acidiphila DSM 44928] gi|256363017|gb|ACU76514.1| NADH-quinone oxidoreductase, B subunit [Catenulispora acidiphila DSM 44928] Length = 184 Score = 203 bits (517), Expect = 8e-51, Method: Composition-based stats. Identities = 78/151 (51%), Positives = 105/151 (69%), Gaps = 2/151 (1%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89 E GFL+T+V+ L + R S+ TFGLACCA+EMM RYDL RFG A+ Sbjct: 4 EEKLPAGFLLTTVEGLAGYMRKSSVWPATFGLACCAIEMMATGAGRYDLARFGMERFSAT 63 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQ+D+MIVAG ++ KMA LR+VYDQM P++VI+MG CA+ GG ++ Y++V+G D I Sbjct: 64 PRQADLMIVAGRVSQKMAPVLRQVYDQMANPKWVIAMGVCASSGGMFNN-YAIVQGVDHI 122 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 VPVDIY+PGCPP E L+ IL L ++I+ + Sbjct: 123 VPVDIYLPGCPPRPEMLLDAILKLHEQIQSM 153 >gi|221039728|dbj|BAH11627.1| unnamed protein product [Homo sapiens] Length = 182 Score = 203 bits (517), Expect = 9e-51, Method: Composition-based stats. Identities = 99/152 (65%), Positives = 115/152 (75%) Query: 6 VNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACC 65 V+Q + + S + + + + ++V +D LV WAR SL MTFGLACC Sbjct: 30 VHQSVATDGPSSTQPALPKARAVAPKPSSRGEYVVAKLDDLVNWARRSSLWPMTFGLACC 89 Query: 66 AVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVIS 125 AVEMM + PRYD++RFG RASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYV+S Sbjct: 90 AVEMMHMAAPRYDMDRFGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVVS 149 Query: 126 MGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 MGSCANGGGYYHYSYSVVRGCDRIVPVDIY+P Sbjct: 150 MGSCANGGGYYHYSYSVVRGCDRIVPVDIYIP 181 >gi|50083950|ref|YP_045460.1| NADH dehydrogenase subunit B [Acinetobacter sp. ADP1] gi|81393679|sp|Q6FE70|NUOB_ACIAD RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|49529926|emb|CAG67638.1| NADH dehydrogenase I chain B [Acinetobacter sp. ADP1] Length = 225 Score = 203 bits (517), Expect = 9e-51, Method: Composition-based stats. Identities = 80/181 (44%), Positives = 110/181 (60%), Gaps = 11/181 (6%) Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQL----VTWARTGSLMWM 58 LT N + L++ + E+ +K +T ++ + V W R S+ Sbjct: 5 LTRANP----DANQYPLQERQVVNDPLQEEV-NKNVFMTRLEDVLHNVVNWGRKNSVWPF 59 Query: 59 TFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQM 117 FG +CC VE +DL RFG RASPRQ+D+MIVAGT KMA ++R+Y+QM Sbjct: 60 NFGTSCCYVEYATTLTGVHDLSRFGAEVIRASPRQADLMIVAGTCFVKMAPVIQRLYEQM 119 Query: 118 PEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 EP++VISMG+CAN GG Y YSVV+G D+I+PVD+YVPGCPP EALI ++LLQ +I Sbjct: 120 LEPKWVISMGACANSGGMY-DIYSVVQGVDKIIPVDVYVPGCPPRPEALIQALMLLQDQI 178 Query: 178 R 178 + Sbjct: 179 Q 179 >gi|315605129|ref|ZP_07880180.1| NADH-quinone oxidoreductase subunit B [Actinomyces sp. oral taxon 180 str. F0310] gi|315313165|gb|EFU61231.1| NADH-quinone oxidoreductase subunit B [Actinomyces sp. oral taxon 180 str. F0310] Length = 184 Score = 203 bits (517), Expect = 9e-51, Method: Composition-based stats. Identities = 81/151 (53%), Positives = 113/151 (74%), Gaps = 2/151 (1%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89 E G +TSV++++ AR S +T GLACCA+EMM A PR+D+ RFG RAS Sbjct: 4 EESLPAGIALTSVEKVLGLARKYSQWPVTMGLACCAIEMMAAGTPRFDMARFGLEVFRAS 63 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PR SD+MIV+G +++KMA +RRVYD MPEP++VISMG+CA+ GG ++ Y+VV+GCD I Sbjct: 64 PRHSDMMIVSGRVSHKMAPIIRRVYDSMPEPKWVISMGACASSGGVFNN-YAVVQGCDHI 122 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 VPVD+Y+PGCPP EALI+ +L+L+++I + Sbjct: 123 VPVDVYLPGCPPRPEALIHAVLVLREQIGKE 153 >gi|295837078|ref|ZP_06824011.1| proton-translocating NADH-quinone oxidoreductase, B subunit [Streptomyces sp. SPB74] gi|197697185|gb|EDY44118.1| proton-translocating NADH-quinone oxidoreductase, B subunit [Streptomyces sp. SPB74] Length = 204 Score = 203 bits (516), Expect = 1e-50, Method: Composition-based stats. Identities = 81/181 (44%), Positives = 113/181 (62%), Gaps = 10/181 (5%) Query: 1 MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTF 60 + T V + + SR++ + + ++ W R SL F Sbjct: 6 VPTTAVPAPVDLPDPTAPPAGTTGVLSRLAPQ---------PMKVVLNWGRRYSLWVFNF 56 Query: 61 GLACCAVEMMQASMPRYDLERFGFAPR-ASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119 GLACCA+E + ASM R+D R G P PRQ+D+M+V+GT+T+KMA A++R+Y+QMPE Sbjct: 57 GLACCAIEFIAASMSRHDFIRLGVIPFAPGPRQADLMVVSGTVTDKMAPAVKRLYEQMPE 116 Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179 P+YVIS G+C+N GG Y SYSV +G D+I+PVD+YVPGCPP EAL+ GIL LQ+KI + Sbjct: 117 PKYVISFGACSNCGGPYWDSYSVTKGVDQIIPVDVYVPGCPPRPEALLQGILKLQEKIAK 176 Query: 180 V 180 Sbjct: 177 E 177 >gi|254283162|ref|ZP_04958130.1| NADH dehydrogenase i, b subunit [gamma proteobacterium NOR51-B] gi|219679365|gb|EED35714.1| NADH dehydrogenase i, b subunit [gamma proteobacterium NOR51-B] Length = 214 Score = 203 bits (516), Expect = 1e-50, Method: Composition-based stats. Identities = 75/180 (41%), Positives = 111/180 (61%), Gaps = 11/180 (6%) Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62 LT I + + S++ +E + + ++ L+ W R SL FGL Sbjct: 5 LTRPEDTIATSPGTASVD---------MAEQIRRNVMFARLEDLIAWGRAHSLWPFNFGL 55 Query: 63 ACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPR 121 +CC VEM + R+D+ RFG RA+PRQ+D+M+++GT+ KMA ++ +YDQ+ EPR Sbjct: 56 SCCYVEMATSFTSRHDIARFGSEVIRATPRQADLMVISGTVFRKMAPVVQHLYDQLLEPR 115 Query: 122 YVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181 ++ISMGSCAN GG Y YSVV+G D+ +PVD+YVPGCPP EAL+ G+++LQ I + Sbjct: 116 WIISMGSCANSGGMY-DIYSVVQGVDKFIPVDVYVPGCPPRPEALMQGLMMLQDAIGKER 174 >gi|326559970|gb|EGE10368.1| NADH dehydrogenase subunit B [Moraxella catarrhalis 46P47B1] gi|326567656|gb|EGE17764.1| NADH dehydrogenase subunit B [Moraxella catarrhalis 12P80B1] gi|326569465|gb|EGE19525.1| NADH dehydrogenase subunit B [Moraxella catarrhalis BC8] gi|326572775|gb|EGE22761.1| NADH dehydrogenase subunit B [Moraxella catarrhalis BC7] Length = 223 Score = 203 bits (516), Expect = 1e-50, Method: Composition-based stats. Identities = 81/184 (44%), Positives = 103/184 (55%), Gaps = 11/184 (5%) Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQL----VTWARTGSLMWM 58 LT NQ + ++ I+ K + + L W R SL Sbjct: 5 LTKPNQ-----HTKQYPQQSREIIDDITQAEVDKNVFLGRLSDLTHNLANWGRKNSLWPF 59 Query: 59 TFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQM 117 FG +CC VE +DL RFG RASPRQ+DVMIVAGT KMA + R+Y+QM Sbjct: 60 NFGTSCCYVEYATTLTGVHDLSRFGAEVIRASPRQADVMIVAGTCFVKMAPVILRLYEQM 119 Query: 118 PEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 EP++VISMG+CAN GG Y YSVV+G D+I+PVD+YVPGCPP EALI ++LLQ I Sbjct: 120 LEPKWVISMGACANSGGMY-DIYSVVQGVDKILPVDVYVPGCPPRPEALIQALMLLQNSI 178 Query: 178 RRVG 181 + Sbjct: 179 QEER 182 >gi|229821708|ref|YP_002883234.1| NADH-quinone oxidoreductase, B subunit [Beutenbergia cavernae DSM 12333] gi|259514655|sp|C5C0S6|NUOB_BEUC1 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|229567621|gb|ACQ81472.1| NADH-quinone oxidoreductase, B subunit [Beutenbergia cavernae DSM 12333] Length = 184 Score = 203 bits (516), Expect = 1e-50, Method: Composition-based stats. Identities = 78/149 (52%), Positives = 104/149 (69%), Gaps = 2/149 (1%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89 E GF++ V LV R SL +T GLACCA+EMM PR+D+ RFG RAS Sbjct: 4 EEKAPSGFMLAKVSDLVGLIRKSSLWPVTMGLACCAIEMMATGTPRFDISRFGMEVFRAS 63 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQ+D+MIV+G ++ KMA +R+VYDQM EP++V+SMG CA+ GG ++ Y+VV+G D I Sbjct: 64 PRQADLMIVSGRVSQKMAPVVRQVYDQMSEPKWVLSMGVCASSGGMFNN-YAVVQGVDHI 122 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIR 178 +PVDIY+PGCPP E L+ IL L ++IR Sbjct: 123 LPVDIYLPGCPPRPEMLLNAILELHEQIR 151 >gi|326474729|gb|EGD98738.1| NADH-ubiquinone oxidoreductase subunit B [Trichophyton tonsurans CBS 112818] Length = 204 Score = 203 bits (516), Expect = 1e-50, Method: Composition-based stats. Identities = 99/184 (53%), Positives = 116/184 (63%), Gaps = 18/184 (9%) Query: 4 TTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFL---VTSVDQLVTWARTGSLMWMTF 60 T + + S S K + + S+ +G L +T++DQ+ WAR GSL MTF Sbjct: 31 TEQSSALQSTAGSVPARKPRREVP-LPSQEKPQGVLDYALTTLDQVANWARQGSLWPMTF 89 Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 GLACCAVEMM S PRYD +R G RASPRQSDVMIVAGTLTNKMA ALR+VYDQMP P Sbjct: 90 GLACCAVEMMHLSTPRYDQDRLGIIFRASPRQSDVMIVAGTLTNKMAPALRQVYDQMPGP 149 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 YSV RGCDRIVPVDIYVPGCPPT+EAL+YGI LQ+K+R Sbjct: 150 TL--------------GDYYSVTRGCDRIVPVDIYVPGCPPTSEALMYGIFQLQRKMRNT 195 Query: 181 GNVK 184 + Sbjct: 196 KITR 199 >gi|261885026|ref|ZP_06009065.1| NADH-quinone oxidoreductase chain b [Campylobacter fetus subsp. venerealis str. Azul-94] Length = 168 Score = 203 bits (516), Expect = 1e-50, Method: Composition-based stats. Identities = 69/151 (45%), Positives = 99/151 (65%), Gaps = 2/151 (1%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RAS 89 + ++T +D L W R SL M FG ACCA+E M A ++DL RF R S Sbjct: 4 ENLVQNDVVLTRLDALFNWGRKNSLWPMIFGTACCAIEFMSAVSSKHDLSRFEAEVMRFS 63 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQ+D+MI+AGT++ K A L+ +YDQM EP++V+SMG+CA GG ++ +Y+ ++G D+I Sbjct: 64 PRQADLMIIAGTISFKQAPILKEIYDQMCEPKWVVSMGACACSGG-FYDNYTTLQGIDQI 122 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 +PVD+Y+ GCPP EA+I IL +Q KI Sbjct: 123 IPVDVYISGCPPRPEAIIDAILAIQDKISNE 153 >gi|256390056|ref|YP_003111620.1| NADH-quinone oxidoreductase subunit beta [Catenulispora acidiphila DSM 44928] gi|256356282|gb|ACU69779.1| NADH-quinone oxidoreductase, B subunit [Catenulispora acidiphila DSM 44928] Length = 291 Score = 203 bits (516), Expect = 1e-50, Method: Composition-based stats. Identities = 74/133 (55%), Positives = 99/133 (74%), Gaps = 1/133 (0%) Query: 46 LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR-ASPRQSDVMIVAGTLTN 104 ++ W R SL FGLACCA+E + SM R+D R G P PRQ+D+M+V+GT+++ Sbjct: 41 VLNWGRRYSLWVFNFGLACCAIEFIATSMARHDFIRLGVIPFAPGPRQADLMVVSGTVSD 100 Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164 KMA A++R+YDQMPEP+YVIS GSC+N GG Y SY V +G D+++PVD+YVPGCPP E Sbjct: 101 KMAPAVKRLYDQMPEPKYVISFGSCSNCGGPYWDSYCVTKGVDQVIPVDVYVPGCPPRPE 160 Query: 165 ALIYGILLLQKKI 177 AL+ GI+ LQ+KI Sbjct: 161 ALLQGIIKLQEKI 173 >gi|188533348|ref|YP_001907145.1| NADH dehydrogenase subunit B [Erwinia tasmaniensis Et1/99] gi|238065142|sp|B2VIV4|NUOB_ERWT9 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|188028390|emb|CAO96251.1| NADH dehydrogenase I chain B [Erwinia tasmaniensis Et1/99] Length = 224 Score = 203 bits (516), Expect = 1e-50, Method: Composition-based stats. Identities = 76/172 (44%), Positives = 104/172 (60%), Gaps = 5/172 (2%) Query: 14 QSSCSLEKVDADFSRISSEITHK---GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMM 70 L+K + + + G L ++ +V W R SL FGL+CC VEM Sbjct: 14 NDRYPLQKQEIVTDPLEKHVYQNVYMGKLEHALHDMVNWGRKNSLWPFNFGLSCCYVEMT 73 Query: 71 QASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSC 129 + +D+ RFG RASPRQ+D M+VAGT KMA ++R+YDQM EP++VISMG+C Sbjct: 74 TSFTAVHDVARFGSEVIRASPRQADFMVVAGTCFTKMAPVVQRLYDQMLEPKWVISMGAC 133 Query: 130 ANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181 AN GG Y YSVV+G D+ +PVD+Y+PGCPP EA + +LLLQ+ I + Sbjct: 134 ANSGGMY-DIYSVVQGVDKFLPVDVYIPGCPPRPEAYMQALLLLQESIGKER 184 >gi|157371544|ref|YP_001479533.1| NADH dehydrogenase subunit B [Serratia proteamaculans 568] gi|238065214|sp|A8GH15|NUOB_SERP5 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|157323308|gb|ABV42405.1| NADH-quinone oxidoreductase, B subunit [Serratia proteamaculans 568] Length = 224 Score = 203 bits (516), Expect = 1e-50, Method: Composition-based stats. Identities = 76/181 (41%), Positives = 113/181 (62%), Gaps = 3/181 (1%) Query: 3 LTTVNQKIISGQSSCSLEKVDAD-FSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFG 61 LT ++ + + ++V AD + + G L ++ +V W R S+ FG Sbjct: 5 LTRIDPNGENDRYPLQKQEVVADPLDQQVHRTVYMGKLEHALHDMVNWGRKNSIWPYNFG 64 Query: 62 LACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 L+CC VEM+ + +D+ RFG RASPRQ+D+M+VAGT KMA ++R+Y+QM EP Sbjct: 65 LSCCYVEMVTSFTAVHDVARFGAEVLRASPRQADLMVVAGTCFTKMAPVIQRLYEQMLEP 124 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 ++VISMG+CAN GG Y YSVV+G D+ +PVD+Y+PGCPP EA + ++LLQ+ I + Sbjct: 125 KWVISMGACANSGGMY-DIYSVVQGVDKFLPVDVYIPGCPPRPEAYMQALMLLQESIGKE 183 Query: 181 G 181 Sbjct: 184 R 184 >gi|37526976|ref|NP_930320.1| NADH dehydrogenase subunit B [Photorhabdus luminescens subsp. laumondii TTO1] gi|81572443|sp|Q7N2I8|NUOB_PHOLL RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|36786409|emb|CAE15462.1| NADH dehydrogenase I chain B (NADH-ubiquinone oxidoreductase chain 2) (NUO2) [Photorhabdus luminescens subsp. laumondii TTO1] Length = 224 Score = 203 bits (516), Expect = 1e-50, Method: Composition-based stats. Identities = 78/181 (43%), Positives = 111/181 (61%), Gaps = 3/181 (1%) Query: 3 LTTVNQKIISGQSSCSLEKVDAD-FSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFG 61 LT ++ + + +++ AD + + G L ++ +V W R SL FG Sbjct: 5 LTRIDPNGENDRYPLQKQEIVADPLEQHVHRSVYMGKLEHALHDMVNWGRKNSLWPYNFG 64 Query: 62 LACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 L+CC VEM + +D+ RFG RASPRQ+D M+VAGT KMA ++R+YDQM EP Sbjct: 65 LSCCYVEMATSFTAVHDVARFGAEVLRASPRQADFMVVAGTCFTKMAPVIQRLYDQMLEP 124 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 ++VISMG+CAN GG Y YSVV+G D+ +PVD+Y+PGCPP EA + +LLLQ+ I + Sbjct: 125 KWVISMGACANSGGMY-DIYSVVQGVDKFIPVDVYIPGCPPRPEAYMQALLLLQESIGKE 183 Query: 181 G 181 Sbjct: 184 R 184 >gi|291451958|ref|ZP_06591348.1| NADH dehydrogenase subunit NuoB2 [Streptomyces albus J1074] gi|291354907|gb|EFE81809.1| NADH dehydrogenase subunit NuoB2 [Streptomyces albus J1074] Length = 214 Score = 203 bits (516), Expect = 1e-50, Method: Composition-based stats. Identities = 77/136 (56%), Positives = 102/136 (75%), Gaps = 1/136 (0%) Query: 46 LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR-ASPRQSDVMIVAGTLTN 104 ++ W R SL FGLACCA+E + ASM R+D R G P PRQ+D+M+V+GT+T+ Sbjct: 39 VLNWGRRYSLWVFNFGLACCAIEFIAASMARHDFMRLGVIPFAPGPRQADLMVVSGTVTD 98 Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164 KMA A++R+Y+QMPEP+YVIS G+C+N GG Y SYSV +G D+I+PVD+YVPGCPP E Sbjct: 99 KMAPAVKRLYEQMPEPKYVISFGACSNCGGPYWDSYSVTKGVDQIIPVDVYVPGCPPRPE 158 Query: 165 ALIYGILLLQKKIRRV 180 AL+ GI+ LQ+KI R Sbjct: 159 ALLQGIIKLQEKIARE 174 >gi|270262813|ref|ZP_06191084.1| NADH-quinone oxidoreductase subunit B [Serratia odorifera 4Rx13] gi|270043497|gb|EFA16590.1| NADH-quinone oxidoreductase subunit B [Serratia odorifera 4Rx13] Length = 224 Score = 203 bits (516), Expect = 1e-50, Method: Composition-based stats. Identities = 75/181 (41%), Positives = 113/181 (62%), Gaps = 3/181 (1%) Query: 3 LTTVNQKIISGQSSCSLEKVDAD-FSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFG 61 LT ++ + + +++ AD + + G L ++ +V W R S+ FG Sbjct: 5 LTRIDPNGENDRYPLQKQEIVADPLDQQVHRTVYMGKLEHALHDMVNWGRKNSIWPYNFG 64 Query: 62 LACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 L+CC VEM+ + +D+ RFG RASPRQ+D+M+VAGT KMA ++R+Y+QM EP Sbjct: 65 LSCCYVEMVTSFTAVHDVARFGAEVLRASPRQADLMVVAGTCFTKMAPVIQRLYEQMLEP 124 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 ++VISMG+CAN GG Y YSVV+G D+ +PVD+Y+PGCPP EA + ++LLQ+ I + Sbjct: 125 KWVISMGACANSGGMY-DIYSVVQGVDKFLPVDVYIPGCPPRPEAYMQALMLLQESIGKE 183 Query: 181 G 181 Sbjct: 184 R 184 >gi|239980104|ref|ZP_04702628.1| NADH dehydrogenase subunit NuoB2 [Streptomyces albus J1074] Length = 216 Score = 203 bits (516), Expect = 1e-50, Method: Composition-based stats. Identities = 77/136 (56%), Positives = 102/136 (75%), Gaps = 1/136 (0%) Query: 46 LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR-ASPRQSDVMIVAGTLTN 104 ++ W R SL FGLACCA+E + ASM R+D R G P PRQ+D+M+V+GT+T+ Sbjct: 41 VLNWGRRYSLWVFNFGLACCAIEFIAASMARHDFMRLGVIPFAPGPRQADLMVVSGTVTD 100 Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164 KMA A++R+Y+QMPEP+YVIS G+C+N GG Y SYSV +G D+I+PVD+YVPGCPP E Sbjct: 101 KMAPAVKRLYEQMPEPKYVISFGACSNCGGPYWDSYSVTKGVDQIIPVDVYVPGCPPRPE 160 Query: 165 ALIYGILLLQKKIRRV 180 AL+ GI+ LQ+KI R Sbjct: 161 ALLQGIIKLQEKIARE 176 >gi|226953551|ref|ZP_03824015.1| NADH dehydrogenase I subunit B [Acinetobacter sp. ATCC 27244] gi|294649461|ref|ZP_06726885.1| NADH-quinone oxidoreductase subunit B [Acinetobacter haemolyticus ATCC 19194] gi|226835729|gb|EEH68112.1| NADH dehydrogenase I subunit B [Acinetobacter sp. ATCC 27244] gi|292824631|gb|EFF83410.1| NADH-quinone oxidoreductase subunit B [Acinetobacter haemolyticus ATCC 19194] Length = 225 Score = 203 bits (516), Expect = 1e-50, Method: Composition-based stats. Identities = 80/181 (44%), Positives = 109/181 (60%), Gaps = 11/181 (6%) Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQL----VTWARTGSLMWM 58 LT N L+ + E+ +K ++T ++ + V W R SL Sbjct: 5 LTRANP----DADQYPLQDRQIVTDPLEEEV-NKSVMMTRLEDVLHTAVNWGRKNSLWPF 59 Query: 59 TFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQM 117 FG +CC VE +DL RFG RASPRQ+D+MIVAGT KMA ++R+Y+QM Sbjct: 60 NFGTSCCYVEYATTLTGVHDLSRFGAEVIRASPRQADLMIVAGTCFVKMAPVIQRLYEQM 119 Query: 118 PEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 EP++VISMG+CAN GG Y YSVV+G D+I+PVD+Y+PGCPP EALI ++LLQ +I Sbjct: 120 LEPKWVISMGACANSGGMY-DIYSVVQGVDKIIPVDVYIPGCPPRPEALIQALMLLQDQI 178 Query: 178 R 178 + Sbjct: 179 Q 179 >gi|292488843|ref|YP_003531730.1| NADH dehydrogenase I subunit B [Erwinia amylovora CFBP1430] gi|292899993|ref|YP_003539362.1| NADH dehydrogenase I chain B [Erwinia amylovora ATCC 49946] gi|291199841|emb|CBJ46965.1| NADH dehydrogenase I chain B [Erwinia amylovora ATCC 49946] gi|291554277|emb|CBA21599.1| NADH dehydrogenase I chain B [Erwinia amylovora CFBP1430] gi|312173002|emb|CBX81257.1| NADH dehydrogenase I chain B [Erwinia amylovora ATCC BAA-2158] Length = 224 Score = 203 bits (516), Expect = 1e-50, Method: Composition-based stats. Identities = 76/163 (46%), Positives = 103/163 (63%), Gaps = 2/163 (1%) Query: 20 EKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDL 79 E V + + + G L ++ +V W R SL FGL+CC VEM + +D+ Sbjct: 23 EIVTDPLEKHVHQNVYMGKLEHALHDMVNWGRKNSLWPFNFGLSCCYVEMTTSFTAVHDV 82 Query: 80 ERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY 138 RFG RASPRQ+D M+VAGT KMA ++R+YDQM EP++VISMG+CAN GG Y Sbjct: 83 ARFGSEVIRASPRQADFMVVAGTCFTKMAPVIQRLYDQMLEPKWVISMGACANSGGMY-D 141 Query: 139 SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181 YSVV+G D+ +PVD+Y+PGCPP EA + +LLLQ+ I + Sbjct: 142 IYSVVQGVDKFLPVDVYIPGCPPRPEAYMQALLLLQESIGKER 184 >gi|158339661|ref|YP_001520668.1| NADH dehydrogenase subunit B [Acaryochloris marina MBIC11017] gi|218527877|sp|A8ZK18|NDHK2_ACAM1 RecName: Full=NAD(P)H-quinone oxidoreductase subunit K 2; AltName: Full=NAD(P)H dehydrogenase I subunit K 2; AltName: Full=NDH-1 subunit K 2; Short=NDH-K 2 gi|158309902|gb|ABW31518.1| proton-translocating NAD(P)H-quinone oxidoreductase, chain B, putative [Acaryochloris marina MBIC11017] Length = 209 Score = 203 bits (516), Expect = 1e-50, Method: Composition-based stats. Identities = 74/151 (49%), Positives = 106/151 (70%), Gaps = 2/151 (1%) Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87 ++ E++ ++T++D L W + SL FG ACC +E M A R+D+ERFG PR Sbjct: 18 EVTQELSD-NVILTALDDLYDWVKMSSLYPFMFGTACCFMEFMGAYASRFDMERFGMIPR 76 Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146 A+PRQ+D++I AGT+T K A AL R+Y+QMPEP+YV++MG+C GG + S S VRG Sbjct: 77 ATPRQADLLITAGTITMKYAPALVRLYEQMPEPKYVMAMGACTITGGMFSADSPSAVRGV 136 Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 D+++PVD+Y+PGCPP AEA++ I L+KKI Sbjct: 137 DKLIPVDVYIPGCPPRAEAVLDAITKLRKKI 167 >gi|157736575|ref|YP_001489258.1| NADH-quinone oxidoreductase, B subunit [Arcobacter butzleri RM4018] gi|315635738|ref|ZP_07891001.1| NADH-quinone oxidoreductase subunit B [Arcobacter butzleri JV22] gi|238065055|sp|A8ERL5|NUOB_ARCB4 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|157698429|gb|ABV66589.1| NADH-quinone oxidoreductase, B subunit [Arcobacter butzleri RM4018] gi|315480035|gb|EFU70705.1| NADH-quinone oxidoreductase subunit B [Arcobacter butzleri JV22] Length = 171 Score = 203 bits (516), Expect = 1e-50, Method: Composition-based stats. Identities = 68/155 (43%), Positives = 100/155 (64%), Gaps = 2/155 (1%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89 + T +D V W R+ SL M FG ACC +E M + +YD+ RFG R S Sbjct: 6 ESKLGDSIVTTRLDHAVNWGRSYSLWPMAFGTACCGIEFMAVAGAKYDVSRFGAEVVRFS 65 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQ+D++IVAGT++ K A L+++Y+QM EP++VISMG+CA GG ++ +Y+ V+G D I Sbjct: 66 PRQADLLIVAGTISYKQAPILKKIYEQMCEPKWVISMGACACSGG-FYDNYTTVQGIDEI 124 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 +PVD YV GCPP EA++ I+ +Q+K + +K Sbjct: 125 IPVDEYVAGCPPRPEAVLDAIMRIQEKAKTESIIK 159 >gi|167044398|gb|ABZ09075.1| putative NADH ubiquinone oxidoreductase, 20 Kd subunit [uncultured marine crenarchaeote HF4000_APKG6D3] Length = 185 Score = 203 bits (516), Expect = 1e-50, Method: Composition-based stats. Identities = 76/145 (52%), Positives = 97/145 (66%), Gaps = 1/145 (0%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVM 96 + + + W R SL + ACC+VE AS PRYD+ERFG S RQ D++ Sbjct: 39 VVDKPLGMAINWGRLWSLWPVHIETACCSVEFGAASGPRYDVERFGIIEAFGSLRQCDLV 98 Query: 97 IVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV 156 +V GT+T KMA LR VYDQMPEP+YVI+MG+CA GG Y SY+V+ G D I+PVD+YV Sbjct: 99 VVQGTITRKMAPRLRLVYDQMPEPKYVIAMGACAITGGLYFDSYNVLPGIDGILPVDVYV 158 Query: 157 PGCPPTAEALIYGILLLQKKIRRVG 181 PGCPP E LI G +LLQ+KI+R+ Sbjct: 159 PGCPPRPETLIQGCILLQEKIKRMK 183 >gi|116515039|ref|YP_802668.1| NADH dehydrogenase subunit B [Buchnera aphidicola str. Cc (Cinara cedri)] gi|122285565|sp|Q057X4|NUOB_BUCCC RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|116256893|gb|ABJ90575.1| NADH dehydrogenase I chain B [Buchnera aphidicola str. Cc (Cinara cedri)] Length = 225 Score = 202 bits (515), Expect = 1e-50, Method: Composition-based stats. Identities = 83/182 (45%), Positives = 107/182 (58%), Gaps = 4/182 (2%) Query: 3 LTTVNQK--IISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTF 60 LT VN K I SL+K + G + + ++ W R SL F Sbjct: 5 LTRVNTKNSISKKYPLRSLKKTSDPIKKQIKNNIFFGTISKYMQYIMNWGRKNSLWPYNF 64 Query: 61 GLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119 GL+CC VEM+ A +D+ RFG R SPRQ+D M++AGT KMA ++R+YD M E Sbjct: 65 GLSCCYVEMVSAFTSIHDISRFGSEVLRTSPRQADFMVIAGTPFIKMAPVIQRLYDLMLE 124 Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179 P++VISMGSCAN GG Y YSVV+G D+ +PVDIY+PGCPP EA I+ I LLQK I + Sbjct: 125 PKWVISMGSCANSGGMY-DIYSVVQGVDKFLPVDIYIPGCPPRPEAYIHAITLLQKAISK 183 Query: 180 VG 181 Sbjct: 184 ER 185 >gi|28870530|ref|NP_793149.1| NADH dehydrogenase I subunit B [Pseudomonas syringae pv. tomato str. DC3000] gi|71737615|ref|YP_275280.1| NADH dehydrogenase subunit B [Pseudomonas syringae pv. phaseolicola 1448A] gi|213970034|ref|ZP_03398166.1| NADH dehydrogenase subunit B [Pseudomonas syringae pv. tomato T1] gi|237800544|ref|ZP_04589005.1| NADH dehydrogenase subunit B [Pseudomonas syringae pv. oryzae str. 1_6] gi|257485440|ref|ZP_05639481.1| NADH dehydrogenase subunit B [Pseudomonas syringae pv. tabaci ATCC 11528] gi|289625427|ref|ZP_06458381.1| NADH dehydrogenase subunit B [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289649290|ref|ZP_06480633.1| NADH dehydrogenase subunit B [Pseudomonas syringae pv. aesculi str. 2250] gi|289679197|ref|ZP_06500087.1| NADH dehydrogenase subunit B [Pseudomonas syringae pv. syringae FF5] gi|298487549|ref|ZP_07005591.1| NADH-ubiquinone oxidoreductase chain B [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|301381389|ref|ZP_07229807.1| NADH dehydrogenase subunit B [Pseudomonas syringae pv. tomato Max13] gi|302062160|ref|ZP_07253701.1| NADH dehydrogenase subunit B [Pseudomonas syringae pv. tomato K40] gi|302130363|ref|ZP_07256353.1| NADH dehydrogenase subunit B [Pseudomonas syringae pv. tomato NCPPB 1108] gi|302185024|ref|ZP_07261697.1| NADH dehydrogenase subunit B [Pseudomonas syringae pv. syringae 642] gi|81730555|sp|Q87ZQ8|NUOB_PSESM RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|123635950|sp|Q48H53|NUOB_PSE14 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|28853778|gb|AAO56844.1| NADH dehydrogenase I, B subunit [Pseudomonas syringae pv. tomato str. DC3000] gi|71558168|gb|AAZ37379.1| NADH-quinone oxidoreductase, B subunit [Pseudomonas syringae pv. phaseolicola 1448A] gi|213925138|gb|EEB58701.1| NADH dehydrogenase subunit B [Pseudomonas syringae pv. tomato T1] gi|298157933|gb|EFH99011.1| NADH-ubiquinone oxidoreductase chain B [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|320323789|gb|EFW79873.1| NADH dehydrogenase subunit B [Pseudomonas syringae pv. glycinea str. B076] gi|320327928|gb|EFW83933.1| NADH dehydrogenase subunit B [Pseudomonas syringae pv. glycinea str. race 4] gi|330866837|gb|EGH01546.1| NADH dehydrogenase subunit B [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330875772|gb|EGH09921.1| NADH dehydrogenase subunit B [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|330889659|gb|EGH22320.1| NADH dehydrogenase subunit B [Pseudomonas syringae pv. mori str. 301020] gi|330900626|gb|EGH32045.1| NADH dehydrogenase subunit B [Pseudomonas syringae pv. japonica str. M301072PT] gi|330940383|gb|EGH43487.1| NADH dehydrogenase subunit B [Pseudomonas syringae pv. pisi str. 1704B] gi|330954562|gb|EGH54822.1| NADH dehydrogenase subunit B [Pseudomonas syringae Cit 7] gi|330965590|gb|EGH65850.1| NADH dehydrogenase subunit B [Pseudomonas syringae pv. actinidiae str. M302091] gi|330981370|gb|EGH79473.1| NADH dehydrogenase subunit B [Pseudomonas syringae pv. aptata str. DSM 50252] gi|330987943|gb|EGH86046.1| NADH dehydrogenase subunit B [Pseudomonas syringae pv. lachrymans str. M301315] gi|331010726|gb|EGH90782.1| NADH dehydrogenase subunit B [Pseudomonas syringae pv. tabaci ATCC 11528] gi|331017272|gb|EGH97328.1| NADH dehydrogenase subunit B [Pseudomonas syringae pv. lachrymans str. M302278PT] gi|331023404|gb|EGI03461.1| NADH dehydrogenase subunit B [Pseudomonas syringae pv. oryzae str. 1_6] Length = 224 Score = 202 bits (515), Expect = 1e-50, Method: Composition-based stats. Identities = 76/175 (43%), Positives = 107/175 (61%), Gaps = 7/175 (4%) Query: 12 SGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQL----VTWARTGSLMWMTFGLACCAV 67 + + K + + ++ HK + ++ + V W R SL FGL+CC V Sbjct: 12 APNEQYPIGKRETVSDPLEDQV-HKNIYMGKLEDVLNGAVNWGRKNSLWPYNFGLSCCYV 70 Query: 68 EMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISM 126 EM A +D+ RFG RASPRQ+D M++AGT KMA ++R+Y+QM EP++VISM Sbjct: 71 EMTTAFTAPHDIARFGAEVIRASPRQADFMVIAGTCFIKMAPIIQRLYEQMLEPKWVISM 130 Query: 127 GSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181 GSCAN GG Y YSVV+G D+ +PVD+YVPGCPP EA + G++LLQ+ I + Sbjct: 131 GSCANSGGMY-DIYSVVQGVDKFLPVDVYVPGCPPRPEAFLQGLMLLQESIGKER 184 >gi|159036128|ref|YP_001535381.1| NADH-quinone oxidoreductase, B subunit [Salinispora arenicola CNS-205] gi|238065019|sp|A8M069|NUOB1_SALAI RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName: Full=NADH dehydrogenase I subunit B 1; AltName: Full=NDH-1 subunit B 1 gi|157914963|gb|ABV96390.1| NADH-quinone oxidoreductase, B subunit [Salinispora arenicola CNS-205] Length = 188 Score = 202 bits (515), Expect = 1e-50, Method: Composition-based stats. Identities = 78/137 (56%), Positives = 103/137 (75%), Gaps = 1/137 (0%) Query: 46 LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS-PRQSDVMIVAGTLTN 104 ++ W R SL FGLACCA+E + SM R+D R G P A PRQ+D+M+V+GT+T+ Sbjct: 14 VLNWGRRYSLWVFNFGLACCAIEFIATSMSRHDFMRLGVIPFAHGPRQADLMVVSGTVTD 73 Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164 KMA A++R+YDQMPEP+YVIS G+C+N GG Y SYSV +G D+++PVD+YVPGCPP E Sbjct: 74 KMAPAIKRLYDQMPEPKYVISFGACSNCGGPYWDSYSVTKGVDQLIPVDVYVPGCPPRPE 133 Query: 165 ALIYGILLLQKKIRRVG 181 AL++GIL LQ+KI G Sbjct: 134 ALLHGILRLQEKIAAEG 150 >gi|262373374|ref|ZP_06066653.1| trifunctional NADH dehydrogenase I subunit B/C/D [Acinetobacter junii SH205] gi|262313399|gb|EEY94484.1| trifunctional NADH dehydrogenase I subunit B/C/D [Acinetobacter junii SH205] Length = 225 Score = 202 bits (515), Expect = 1e-50, Method: Composition-based stats. Identities = 80/181 (44%), Positives = 109/181 (60%), Gaps = 11/181 (6%) Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQL----VTWARTGSLMWM 58 LT N L+ + E+ +K ++T ++ + V W R SL Sbjct: 5 LTRANP----DADQYPLQDRQIVTDPLEEEV-NKSVMMTRLEDVLHTAVNWGRKNSLWPF 59 Query: 59 TFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQM 117 FG +CC VE +DL RFG RASPRQ+D+MIVAGT KMA ++R+Y+QM Sbjct: 60 NFGTSCCYVEYATTLTGVHDLSRFGAEVIRASPRQADLMIVAGTCFVKMAPVIQRLYEQM 119 Query: 118 PEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 EP++VISMG+CAN GG Y YSVV+G D+I+PVD+Y+PGCPP EALI ++LLQ +I Sbjct: 120 LEPKWVISMGACANSGGMY-DIYSVVQGVDKIIPVDVYIPGCPPRPEALIQALMLLQDQI 178 Query: 178 R 178 + Sbjct: 179 Q 179 >gi|66046427|ref|YP_236268.1| NADH dehydrogenase subunit B [Pseudomonas syringae pv. syringae B728a] gi|75501522|sp|Q4ZRJ2|NUOB_PSEU2 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|63257134|gb|AAY38230.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit [Pseudomonas syringae pv. syringae B728a] gi|330972908|gb|EGH72974.1| NADH dehydrogenase subunit B [Pseudomonas syringae pv. aceris str. M302273PT] Length = 224 Score = 202 bits (515), Expect = 1e-50, Method: Composition-based stats. Identities = 76/175 (43%), Positives = 107/175 (61%), Gaps = 7/175 (4%) Query: 12 SGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQL----VTWARTGSLMWMTFGLACCAV 67 + + K + + ++ HK + ++ + V W R SL FGL+CC V Sbjct: 12 APNEQYPIGKRETVSDPLEDQV-HKNIYMGKLEDVLSGAVNWGRKNSLWPYNFGLSCCYV 70 Query: 68 EMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISM 126 EM A +D+ RFG RASPRQ+D M++AGT KMA ++R+Y+QM EP++VISM Sbjct: 71 EMTTAFTAPHDIARFGAEVIRASPRQADFMVIAGTCFIKMAPIIQRLYEQMLEPKWVISM 130 Query: 127 GSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181 GSCAN GG Y YSVV+G D+ +PVD+YVPGCPP EA + G++LLQ+ I + Sbjct: 131 GSCANSGGMY-DIYSVVQGVDKFLPVDVYVPGCPPRPEAFLQGLMLLQESIGKER 184 >gi|167740356|ref|ZP_02413130.1| NADH dehydrogenase subunit B [Burkholderia pseudomallei 14] gi|167817572|ref|ZP_02449252.1| NADH dehydrogenase subunit B [Burkholderia pseudomallei 91] gi|167825975|ref|ZP_02457446.1| NADH dehydrogenase subunit B [Burkholderia pseudomallei 9] gi|167896050|ref|ZP_02483452.1| NADH dehydrogenase subunit B [Burkholderia pseudomallei 7894] gi|167912696|ref|ZP_02499787.1| NADH dehydrogenase subunit B [Burkholderia pseudomallei 112] gi|167920662|ref|ZP_02507753.1| NADH dehydrogenase subunit B [Burkholderia pseudomallei BCC215] gi|226192982|ref|ZP_03788593.1| putative NADH-quinone oxidoreductase, B subunit [Burkholderia pseudomallei Pakistan 9] gi|237813963|ref|YP_002898414.1| NADH-quinone oxidoreductase subunit b (NADH dehydrogenase i subunit b) (ndh-1 subunit b) [Burkholderia pseudomallei MSHR346] gi|225934952|gb|EEH30928.1| putative NADH-quinone oxidoreductase, B subunit [Burkholderia pseudomallei Pakistan 9] gi|237506107|gb|ACQ98425.1| NADH-quinone oxidoreductase subunit b (NADH dehydrogenase i subunit b) (ndh-1 subunit b) [Burkholderia pseudomallei MSHR346] Length = 167 Score = 202 bits (515), Expect = 1e-50, Method: Composition-based stats. Identities = 106/151 (70%), Positives = 125/151 (82%) Query: 32 EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPR 91 + GF+VT++D + A+ SL +MTFGLACCAVEMM A+ RYD++RFG PRASPR Sbjct: 7 TLEKDGFIVTTLDAAMAAAQKNSLWYMTFGLACCAVEMMHAAGARYDMDRFGMIPRASPR 66 Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151 Q D+MIVAGTLTNKMA A+RRVYDQM EPRYV+SMGSCANGGGYYHY YSVVRGCDRIVP Sbjct: 67 QCDLMIVAGTLTNKMAPAMRRVYDQMAEPRYVVSMGSCANGGGYYHYGYSVVRGCDRIVP 126 Query: 152 VDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182 VD+YVPGCPPTAEAL+YG++ LQ+K+ Sbjct: 127 VDVYVPGCPPTAEALVYGLMQLQRKVAERST 157 >gi|118576844|ref|YP_876587.1| NADH-ubiquinone oxidoreductase, subunit B [Cenarchaeum symbiosum A] gi|118195365|gb|ABK78283.1| NADH-ubiquinone oxidoreductase, subunit B [Cenarchaeum symbiosum A] Length = 160 Score = 202 bits (515), Expect = 1e-50, Method: Composition-based stats. Identities = 77/152 (50%), Positives = 101/152 (66%), Gaps = 5/152 (3%) Query: 38 FLVTSVDQ----LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQ 92 L ++D+ + W R SL + ACC+VE AS P+YD+ERFG S RQ Sbjct: 7 ILEKAIDKPLGYAINWGRIWSLWPVHIETACCSVEFGAASGPKYDVERFGIIEAFGSLRQ 66 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 D+++V GT+T KMA LR VYDQMPEP+YVI+MG+CA GG Y SY+V+ G D ++PV Sbjct: 67 CDLIVVQGTITRKMAPRLRLVYDQMPEPKYVIAMGACAITGGLYFDSYNVLPGIDGVLPV 126 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 D+YVPGCPP E LI G +LLQ+KI+R+ K Sbjct: 127 DVYVPGCPPRPETLIQGCMLLQEKIKRMRARK 158 >gi|116749375|ref|YP_846062.1| trifunctional NADH dehydrogenase I subunit B/C/D [Syntrophobacter fumaroxidans MPOB] gi|218534237|sp|A0LJM5|NUBCD_SYNFM RecName: Full=NADH-quinone oxidoreductase subunit B/C/D; AltName: Full=NADH dehydrogenase I subunit B/C/D; AltName: Full=NDH-1 subunit B/C/D gi|116698439|gb|ABK17627.1| NADH dehydrogenase I, D subunit [Syntrophobacter fumaroxidans MPOB] Length = 787 Score = 202 bits (515), Expect = 2e-50, Method: Composition-based stats. Identities = 74/140 (52%), Positives = 103/140 (73%), Gaps = 2/140 (1%) Query: 39 LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMI 97 +++ D ++ W+R SL + FGL+CC VE A PRYD+ RFG R SPRQ+D++I Sbjct: 5 FLSAADFVLNWSRKYSLWPLFFGLSCCFVEEATAFTPRYDMARFGAEVLRPSPRQADLLI 64 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 V+GT+ K+A + R+Y+QM EP++VISMGSC+N GG Y YSVV+G D+I+PVD+Y+P Sbjct: 65 VSGTVFKKIAPVVLRLYEQMAEPKWVISMGSCSNCGGMY-DVYSVVQGIDQILPVDVYIP 123 Query: 158 GCPPTAEALIYGILLLQKKI 177 GCPP EA++ G+ LLQKKI Sbjct: 124 GCPPRPEAVLQGLTLLQKKI 143 >gi|323702663|ref|ZP_08114324.1| NADH-quinone oxidoreductase, B subunit [Desulfotomaculum nigrificans DSM 574] gi|323532326|gb|EGB22204.1| NADH-quinone oxidoreductase, B subunit [Desulfotomaculum nigrificans DSM 574] Length = 203 Score = 202 bits (515), Expect = 2e-50, Method: Composition-based stats. Identities = 87/186 (46%), Positives = 124/186 (66%), Gaps = 6/186 (3%) Query: 1 MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTF 60 +G V++ + ++ L+K+ AD + I K V +++L+ AR SL + F Sbjct: 20 VGNPPVDE--MQEETIRRLKKIGADPAVIGE--VTKTVSVGPLEKLLNLARANSLWPLGF 75 Query: 61 GLACCAVE-MMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMP 118 GLACCA+E +M A+M R+DL RFG+ RASPRQ+DVMIV GT+T K A + R+Y+QM Sbjct: 76 GLACCAIEGLMAANMARFDLSRFGYEVMRASPRQADVMIVCGTVTKKAAPFVVRLYEQMA 135 Query: 119 EPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 EP+YVI+MGSCA GG + SY+VV G D+++PVD+Y+PGCPP +ALI+ L L++KI Sbjct: 136 EPKYVIAMGSCAISGGPFVDSYAVVPGVDKLIPVDVYLPGCPPRPDALIHAFLKLKEKII 195 Query: 179 RVGNVK 184 VK Sbjct: 196 NPEVVK 201 >gi|213022740|ref|ZP_03337187.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 184 Score = 202 bits (515), Expect = 2e-50, Method: Composition-based stats. Identities = 75/169 (44%), Positives = 106/169 (62%), Gaps = 2/169 (1%) Query: 14 QSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQAS 73 L+K + + E+ K T+ +V W R S+ FGL+CC VEM+ + Sbjct: 14 NDRYPLQKQEIVTDPLEQEVKQKRVHGTNCMTVVNWGRKNSIWPYNFGLSCCYVEMVTSF 73 Query: 74 MPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANG 132 +D+ RFG RASPRQ+D+M+VAGT KMA ++R+YDQM EP++VISMG+CAN Sbjct: 74 TAVHDVARFGAEVLRASPRQADLMVVAGTCFTKMAPVIQRLYDQMLEPKWVISMGACANS 133 Query: 133 GGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181 GG Y YSVV+G D+ +PVD+Y+PGCPP EA + ++LLQ+ I + Sbjct: 134 GGMY-DIYSVVQGVDKFIPVDVYIPGCPPRPEAYMQALMLLQESIGKER 181 >gi|318056637|ref|ZP_07975360.1| NADH dehydrogenase I chain B [Streptomyces sp. SA3_actG] gi|318080916|ref|ZP_07988248.1| NADH dehydrogenase I chain B [Streptomyces sp. SA3_actF] Length = 204 Score = 202 bits (514), Expect = 2e-50, Method: Composition-based stats. Identities = 81/181 (44%), Positives = 112/181 (61%), Gaps = 10/181 (5%) Query: 1 MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTF 60 + T V + + SR++ + + ++ W R SL F Sbjct: 6 VPTTAVPAPVDLPDPTAPPAGTTGVLSRLAPQ---------PMKVVLNWGRRYSLWVFNF 56 Query: 61 GLACCAVEMMQASMPRYDLERFGFAPR-ASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119 GLACCA+E + ASM R+D R G P PRQ+D+M+V+GT+T+KMA A++R+Y+QMPE Sbjct: 57 GLACCAIEFIAASMSRHDFIRLGVIPFAPGPRQADLMVVSGTVTDKMAPAVKRLYEQMPE 116 Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179 P+YVIS G+C+N GG Y SYSV +G D+I+PVD+YVPGCPP EAL+ GIL LQ+KI Sbjct: 117 PKYVISFGACSNCGGPYWDSYSVTKGVDQIIPVDVYVPGCPPRPEALLQGILKLQEKIAH 176 Query: 180 V 180 Sbjct: 177 E 177 >gi|24213594|ref|NP_711075.1| NADH dehydrogenase (ubiquinone) chain B [Leptospira interrogans serovar Lai str. 56601] gi|45658576|ref|YP_002662.1| NADH dehydrogenase subunit B [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|81471022|sp|Q8F7Q0|NUOB_LEPIN RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|81567883|sp|Q72NT7|NUOB_LEPIC RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|24194386|gb|AAN48093.1| NADH dehydrogenase (ubiquinone) chain B [Leptospira interrogans serovar Lai str. 56601] gi|45601820|gb|AAS71299.1| NADH dehydrogenase I B subunit [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 186 Score = 202 bits (514), Expect = 2e-50, Method: Composition-based stats. Identities = 71/159 (44%), Positives = 106/159 (66%), Gaps = 2/159 (1%) Query: 24 ADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFG 83 +D S+ + + +V+ ++ W R+ SL F ACC +E M + YD+ RFG Sbjct: 4 SDLSKTPGQALGDMVQLGNVESVIQWGRSYSLWPYPFATACCGIEYMSTACSDYDIARFG 63 Query: 84 FA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142 P SPRQ+D+++V GT+T KMA LR++YDQM EP++VIS+G+CA+ GG +H +Y V Sbjct: 64 AERPSFSPRQADMILVLGTITYKMAPVLRQIYDQMAEPKFVISVGACASSGGMFH-TYGV 122 Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181 ++G DRI+PVD+YVPGCPP EA++ +L LQ K++ G Sbjct: 123 LQGVDRILPVDVYVPGCPPRPEAILDALLKLQTKLKTQG 161 >gi|300717650|ref|YP_003742453.1| NADH dehydrogenase I chain B [Erwinia billingiae Eb661] gi|299063486|emb|CAX60606.1| NADH dehydrogenase I chain B [Erwinia billingiae Eb661] Length = 224 Score = 202 bits (514), Expect = 2e-50, Method: Composition-based stats. Identities = 76/172 (44%), Positives = 104/172 (60%), Gaps = 5/172 (2%) Query: 14 QSSCSLEKVDADFSRISSEITHK---GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMM 70 L+K + + + G L ++ +V W R SL FGL+CC VEM Sbjct: 14 NDRYPLQKQEIVTDPLEKHVHQNVYMGKLEHAMHDMVNWGRKNSLWPFNFGLSCCYVEMT 73 Query: 71 QASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSC 129 + +D+ RFG RASPRQ+D M+VAGT KMA ++R+YDQM EP++VISMG+C Sbjct: 74 TSFTSVHDVARFGSEVIRASPRQADFMVVAGTCFTKMAPVVQRLYDQMLEPKWVISMGAC 133 Query: 130 ANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181 AN GG Y YSVV+G D+ +PVD+Y+PGCPP EA + +LLLQ+ I + Sbjct: 134 ANSGGMY-DIYSVVQGVDKFLPVDVYIPGCPPRPEAYMQALLLLQESIGKER 184 >gi|296274177|ref|YP_003656808.1| NADH-quinone oxidoreductase subunit B [Arcobacter nitrofigilis DSM 7299] gi|296098351|gb|ADG94301.1| NADH-quinone oxidoreductase, B subunit [Arcobacter nitrofigilis DSM 7299] Length = 171 Score = 202 bits (514), Expect = 2e-50, Method: Composition-based stats. Identities = 69/155 (44%), Positives = 105/155 (67%), Gaps = 2/155 (1%) Query: 30 SSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRA 88 + + + T +D+ V WAR+ SL M FG ACC +E M + +YD+ RFG R Sbjct: 5 AESVLGDSVITTRLDKAVNWARSYSLWPMVFGTACCGIEFMSVAAAKYDISRFGAEVVRF 64 Query: 89 SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 148 SPRQ+D++I+AGT+T K A L+++YDQM EP++VISMG+CA+ GG ++ +Y+ ++G D+ Sbjct: 65 SPRQADLLIIAGTITYKQAPVLKKIYDQMCEPKWVISMGACASSGG-FYDNYTTLQGVDQ 123 Query: 149 IVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 I+PVD YV GCPP EA++ I+ +QKK + + Sbjct: 124 IIPVDEYVSGCPPRPEAVLDAIISIQKKAQNESII 158 >gi|255019940|ref|ZP_05292014.1| NADH-ubiquinone oxidoreductase chain B [Acidithiobacillus caldus ATCC 51756] gi|254970599|gb|EET28087.1| NADH-ubiquinone oxidoreductase chain B [Acidithiobacillus caldus ATCC 51756] Length = 162 Score = 202 bits (514), Expect = 2e-50, Method: Composition-based stats. Identities = 79/150 (52%), Positives = 106/150 (70%), Gaps = 2/150 (1%) Query: 32 EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASP 90 E L +D+L+ W+R GSL + FG +CC +EM+ A PR+D+ RFG R+SP Sbjct: 4 ERGPLSLLAGKLDELIAWSRAGSLWPLNFGTSCCFIEMVAAVTPRHDIARFGAEVLRSSP 63 Query: 91 RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150 RQ+DV+I +GT+ KMA + +Y QM EP++VISMGSCAN GG Y YSV++G D+I+ Sbjct: 64 RQADVLICSGTVFAKMAPMIVEIYAQMLEPKWVISMGSCANSGGMY-DVYSVIQGLDQIL 122 Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 PVD+YVPGCPP EAL G+LLLQ+KIR+ Sbjct: 123 PVDVYVPGCPPRPEALTDGLLLLQRKIRQR 152 >gi|146299005|ref|YP_001193596.1| NADH-quinone oxidoreductase, B subunit [Flavobacterium johnsoniae UW101] gi|238065144|sp|A5FKI9|NUOB_FLAJ1 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|146153423|gb|ABQ04277.1| NADH dehydrogenase subunit B [Flavobacterium johnsoniae UW101] Length = 182 Score = 202 bits (514), Expect = 2e-50, Method: Composition-based stats. Identities = 66/150 (44%), Positives = 103/150 (68%), Gaps = 2/150 (1%) Query: 30 SSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA- 88 +T +GF T ++ +V AR SL + F +CC +E M YDL RFG + Sbjct: 12 PEGLTGEGFFATKLNDVVGLARANSLWPLPFATSCCGIEFMATMAAHYDLARFGSERVSF 71 Query: 89 SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 148 SPRQ+D+++V GT++ KMA LR+VY+QM EPR+VI++G+CA+ GG + +YSV++G D+ Sbjct: 72 SPRQADMLLVMGTISKKMAPILRQVYEQMSEPRWVIAVGACASSGGVF-DTYSVLQGIDK 130 Query: 149 IVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 ++PVD+YVPGCPP E ++ G++ LQ+ ++ Sbjct: 131 VIPVDVYVPGCPPRPEQIVDGVMRLQELVK 160 >gi|91773272|ref|YP_565964.1| F420H2 dehydrogenase subunit B [Methanococcoides burtonii DSM 6242] gi|91712287|gb|ABE52214.1| F420H2 dehydrogenase subunit B [Methanococcoides burtonii DSM 6242] Length = 184 Score = 202 bits (514), Expect = 2e-50, Method: Composition-based stats. Identities = 66/170 (38%), Positives = 98/170 (57%), Gaps = 6/170 (3%) Query: 14 QSSCSLEKVDADFSRISSEITHKGFLVT------SVDQLVTWARTGSLMWMTFGLACCAV 67 + ++E + I IT +T L+ W R SL ++T + CC V Sbjct: 5 NDNETVENQEGYVEEIPGVITTTSMAITEFLKKTKAQDLINWGRKNSLWFLTQPMGCCGV 64 Query: 68 EMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMG 127 EM+ YD +RFG PR SPR +DVMI++G +T K AL +++QM P++VI MG Sbjct: 65 EMIATGCAHYDTDRFGIIPRNSPRAADVMIISGYVTKKYLPALNTLWEQMAAPKWVICMG 124 Query: 128 SCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 C+ GG ++ SYS V+ D++ P+D+++PGCPP EAL+ G + LQKKI Sbjct: 125 DCSISGGPFYESYSTVQNIDKMFPIDVFIPGCPPRPEALLQGFIELQKKI 174 >gi|317492622|ref|ZP_07951049.1| NADH-quinone oxidoreductase [Enterobacteriaceae bacterium 9_2_54FAA] gi|316919372|gb|EFV40704.1| NADH-quinone oxidoreductase [Enterobacteriaceae bacterium 9_2_54FAA] Length = 224 Score = 202 bits (514), Expect = 2e-50, Method: Composition-based stats. Identities = 76/172 (44%), Positives = 105/172 (61%), Gaps = 5/172 (2%) Query: 14 QSSCSLEKVDADFSRISSEITHK---GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMM 70 L+K + + + G L ++ +V W R SL FGL+CC VEM+ Sbjct: 14 NDRYPLQKQEIVTDPLEQHVHRSVYMGKLENALHDMVNWGRKNSLWPYNFGLSCCYVEMV 73 Query: 71 QASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSC 129 + +D+ RFG RASPRQ+D M+VAGT KMA ++R+YDQM EP++VISMGSC Sbjct: 74 TSFTAVHDVARFGAEVLRASPRQADFMVVAGTCFTKMAPVIQRLYDQMLEPKWVISMGSC 133 Query: 130 ANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181 AN GG Y YSVV+G D+ +PVD+Y+PGCPP EA + ++LLQ+ I + Sbjct: 134 ANSGGMY-DIYSVVQGVDKFIPVDVYIPGCPPRPEAYMQALMLLQESIGKER 184 >gi|83951739|ref|ZP_00960471.1| NADH dehydrogenase beta subunit [Roseovarius nubinhibens ISM] gi|83836745|gb|EAP76042.1| NADH dehydrogenase beta subunit [Roseovarius nubinhibens ISM] Length = 127 Score = 202 bits (514), Expect = 2e-50, Method: Composition-based stats. Identities = 111/126 (88%), Positives = 116/126 (92%), Gaps = 1/126 (0%) Query: 58 MTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQM 117 MTF CCAVEMM +MPRYD ERFGFAPRASPRQSDVMIVAGTLTNKMA ALR+VYDQM Sbjct: 1 MTFVC-CCAVEMMHVAMPRYDAERFGFAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQM 59 Query: 118 PEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 PEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQ+KI Sbjct: 60 PEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQRKI 119 Query: 178 RRVGNV 183 RR G + Sbjct: 120 RRTGTI 125 >gi|330958158|gb|EGH58418.1| NADH dehydrogenase subunit B [Pseudomonas syringae pv. maculicola str. ES4326] Length = 224 Score = 202 bits (513), Expect = 2e-50, Method: Composition-based stats. Identities = 75/175 (42%), Positives = 107/175 (61%), Gaps = 7/175 (4%) Query: 12 SGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQL----VTWARTGSLMWMTFGLACCAV 67 + + K + + ++ HK + ++ + V W R SL FGL+CC V Sbjct: 12 APNEQYPIGKRETVSDPLEDQV-HKNIFMGKLEDVLNGAVNWGRKNSLWPYNFGLSCCYV 70 Query: 68 EMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISM 126 EM A +D+ RFG RASPRQ+D M++AGT KMA ++R+Y+QM EP++VISM Sbjct: 71 EMTTAFTAPHDIARFGAEVIRASPRQADFMVIAGTPFLKMAPIIQRLYEQMLEPKWVISM 130 Query: 127 GSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181 G+CAN GG Y YSVV+G D+ +PVD+YVPGCPP EA + G++LLQ+ I + Sbjct: 131 GACANSGGMY-DIYSVVQGVDKFLPVDVYVPGCPPRPEAFLQGLMLLQESIGQER 184 >gi|84494897|ref|ZP_00994016.1| putative NADH dehydrogenase I chain B [Janibacter sp. HTCC2649] gi|84384390|gb|EAQ00270.1| putative NADH dehydrogenase I chain B [Janibacter sp. HTCC2649] Length = 212 Score = 202 bits (513), Expect = 2e-50, Method: Composition-based stats. Identities = 76/138 (55%), Positives = 103/138 (74%), Gaps = 1/138 (0%) Query: 41 TSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR-ASPRQSDVMIVA 99 + ++ W R SL FGLACCA+E + ASM R+D R G P PRQ+D+M+V+ Sbjct: 23 KPIRVVLNWGRRYSLWVFNFGLACCAIEFIAASMGRHDFIRLGVIPFAPGPRQADLMVVS 82 Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGC 159 GT+T+KMA A+RR+YDQMPEP+YVIS G+C+N GG Y SYSV +G D+++PVD+YVPGC Sbjct: 83 GTVTDKMAPAIRRLYDQMPEPKYVISFGACSNSGGPYWDSYSVTKGVDQLIPVDVYVPGC 142 Query: 160 PPTAEALIYGILLLQKKI 177 PP EAL++GI+ LQ++I Sbjct: 143 PPRPEALLHGIIKLQEQI 160 >gi|86158994|ref|YP_465779.1| NADH dehydrogenase subunit B [Anaeromyxobacter dehalogenans 2CP-C] gi|123498614|sp|Q2IL09|NUOB2_ANADE RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName: Full=NADH dehydrogenase I subunit B 2; AltName: Full=NDH-1 subunit B 2 gi|85775505|gb|ABC82342.1| NADH dehydrogenase subunit B [Anaeromyxobacter dehalogenans 2CP-C] Length = 173 Score = 202 bits (513), Expect = 2e-50, Method: Composition-based stats. Identities = 84/139 (60%), Positives = 104/139 (74%) Query: 40 VTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVA 99 + +D L+ AR SL ++TFGLACC +E+MQ PR DL RFG PRASPRQ+D MIVA Sbjct: 18 TSQLDNLINLARASSLYYLTFGLACCGIELMQTGGPRADLMRFGAIPRASPRQADFMIVA 77 Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGC 159 GTLT KMA R +YDQMPEP+YVISMGSC+N GG + YSV +G D+++PVD+YVPGC Sbjct: 78 GTLTYKMAERARLLYDQMPEPKYVISMGSCSNCGGLFQLGYSVCKGVDKVIPVDVYVPGC 137 Query: 160 PPTAEALIYGILLLQKKIR 178 PP EAL G+L LQ+ +R Sbjct: 138 PPRPEALTEGLLRLQEIVR 156 >gi|197285619|ref|YP_002151491.1| NADH dehydrogenase subunit B [Proteus mirabilis HI4320] gi|226327884|ref|ZP_03803402.1| hypothetical protein PROPEN_01765 [Proteus penneri ATCC 35198] gi|227356122|ref|ZP_03840512.1| NADH-quinone oxidoreductase chain B [Proteus mirabilis ATCC 29906] gi|238065191|sp|B4EZC9|NUOB_PROMH RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|194683106|emb|CAR43667.1| NADH-quinone oxidoreductase chain B [Proteus mirabilis HI4320] gi|225203588|gb|EEG85942.1| hypothetical protein PROPEN_01765 [Proteus penneri ATCC 35198] gi|227163767|gb|EEI48679.1| NADH-quinone oxidoreductase chain B [Proteus mirabilis ATCC 29906] Length = 224 Score = 202 bits (513), Expect = 2e-50, Method: Composition-based stats. Identities = 76/181 (41%), Positives = 111/181 (61%), Gaps = 3/181 (1%) Query: 3 LTTVNQKIISGQSSCSLEKVDAD-FSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFG 61 LT ++ + + +++ +D + G L ++ +V W R SL FG Sbjct: 5 LTRIDPNGENDRYPLQSQEIVSDPLDAHVHRSVYMGKLEHALHDVVNWGRKNSLWPYNFG 64 Query: 62 LACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 L+CC VEM+ + +D+ RFG RASPRQ+D M+VAGT KMA ++R+YDQM EP Sbjct: 65 LSCCYVEMVTSFTAVHDVARFGSEVLRASPRQADFMVVAGTCFTKMAPVIQRLYDQMLEP 124 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 ++VISMG+CAN GG Y YSVV+G D+ +PVD+Y+PGCPP EA + ++LLQ+ I + Sbjct: 125 KWVISMGACANSGGMY-DIYSVVQGVDKFIPVDVYIPGCPPRPEAYMQALMLLQESIGKE 183 Query: 181 G 181 Sbjct: 184 R 184 >gi|332883543|gb|EGK03826.1| NADH-quinone oxidoreductase subunit B [Dysgonomonas mossii DSM 22836] Length = 183 Score = 202 bits (513), Expect = 2e-50, Method: Composition-based stats. Identities = 63/149 (42%), Positives = 99/149 (66%), Gaps = 2/149 (1%) Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQSDV 95 GF T D ++ AR SL + F +CC +E M YD+ RFG SPRQ+D+ Sbjct: 20 GFFATKFDYVIGLARANSLWPLPFATSCCGIEFMATMAATYDMGRFGAERNSFSPRQADM 79 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155 ++V GT++ KMA LR VY+QM EP++VI++G+CA+ GG + +YSV++G D+++PVD+Y Sbjct: 80 LMVMGTISKKMAPILRHVYEQMAEPKWVIAVGACASSGGIF-DTYSVLQGIDKVIPVDVY 138 Query: 156 VPGCPPTAEALIYGILLLQKKIRRVGNVK 184 VPGCPP E ++ G++ LQ+ ++ ++ Sbjct: 139 VPGCPPRPEQILDGVMQLQELVKHESILR 167 >gi|239905979|ref|YP_002952718.1| NADH-quinone oxidoreductase chain B/C/D [Desulfovibrio magneticus RS-1] gi|239795843|dbj|BAH74832.1| NADH-quinone oxidoreductase chain B/C/D [Desulfovibrio magneticus RS-1] Length = 793 Score = 202 bits (513), Expect = 2e-50, Method: Composition-based stats. Identities = 74/140 (52%), Positives = 99/140 (70%), Gaps = 2/140 (1%) Query: 39 LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQSDVMI 97 L D ++ WAR SL FGL+CC VE A PRYD+ RFG R SPRQ+DV+I Sbjct: 8 LFRPADAVINWARKNSLWPFFFGLSCCFVEEATAWGPRYDIARFGSEVFRGSPRQADVLI 67 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 V+GT+ K+A ++Y+QM +P++VISMGSC+N GG Y YSVV+G D+I+P+D+Y+P Sbjct: 68 VSGTMFKKIAPVALQLYEQMSDPKWVISMGSCSNSGGMY-DVYSVVQGSDQILPIDVYIP 126 Query: 158 GCPPTAEALIYGILLLQKKI 177 GCPP EA+ G++LLQKKI Sbjct: 127 GCPPRPEAVFEGLMLLQKKI 146 >gi|119714785|ref|YP_921750.1| NADH dehydrogenase subunit B [Nocardioides sp. JS614] gi|238065185|sp|A1SE28|NUOB_NOCSJ RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|119535446|gb|ABL80063.1| NADH dehydrogenase subunit B [Nocardioides sp. JS614] Length = 184 Score = 202 bits (513), Expect = 2e-50, Method: Composition-based stats. Identities = 76/152 (50%), Positives = 106/152 (69%), Gaps = 2/152 (1%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89 E G L+++V+ L + R S +FGLACCA+EMM + P++DL RFG RAS Sbjct: 4 EEKLPSGVLLSTVEGLAGYMRKASFWPASFGLACCAIEMMTSGGPKHDLGRFGMEVFRAS 63 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQ+DVMIVAG ++ KMA LR++YDQMPEP++V++MG CA+ GG ++ Y+VV+G D + Sbjct: 64 PRQADVMIVAGRVSQKMAPVLRQIYDQMPEPKWVLAMGVCASSGGMFNN-YAVVQGVDHV 122 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181 VPVD+Y+PGCPP + LI IL L K++ Sbjct: 123 VPVDMYLPGCPPRPQMLIDAILKLHDKVQHTK 154 >gi|257077079|ref|ZP_05571440.1| NADH dehydrogenase subunit B [Ferroplasma acidarmanus fer1] Length = 157 Score = 202 bits (513), Expect = 3e-50, Method: Composition-based stats. Identities = 76/150 (50%), Positives = 103/150 (68%), Gaps = 1/150 (0%) Query: 32 EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APRASP 90 + G T++++ + W R+ SL +T GLACCA+EMM D+ RFG R SP Sbjct: 5 KTGDLGVKTTTLEKALQWGRSNSLWPLTMGLACCAIEMMATQAADLDMARFGSEIFRNSP 64 Query: 91 RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150 RQSD+MIVAGT T +MA ++R+Y++MP P+YVI+MG C GG Y YSVV G D+++ Sbjct: 65 RQSDLMIVAGTTTKRMAPRVKRIYEEMPYPKYVIAMGVCVIQGGPYVDGYSVVLGVDKVI 124 Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 PVD+YVPGCPP+ +AL YG++ LQKKIR Sbjct: 125 PVDVYVPGCPPSPQALTYGLITLQKKIRNE 154 >gi|70731257|ref|YP_260998.1| NADH dehydrogenase subunit B [Pseudomonas fluorescens Pf-5] gi|123654431|sp|Q4K9T5|NUOB_PSEF5 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|68345556|gb|AAY93162.1| NADH-quinone oxidoreductase, B subunit [Pseudomonas fluorescens Pf-5] Length = 224 Score = 202 bits (513), Expect = 3e-50, Method: Composition-based stats. Identities = 75/175 (42%), Positives = 107/175 (61%), Gaps = 7/175 (4%) Query: 12 SGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQL----VTWARTGSLMWMTFGLACCAV 67 + + + + + ++ HK + ++ + V W R SL FGL+CC V Sbjct: 12 APNDQYPIGERETVSDPLEDQV-HKNIFMGKLEDVLSGAVNWGRKNSLWPYNFGLSCCYV 70 Query: 68 EMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISM 126 EM A +D+ RFG RASPRQ+D M++AGT KMA ++R+Y+QM EP++VISM Sbjct: 71 EMTTAFTAPHDIARFGAEVIRASPRQADFMVIAGTCFIKMAPIIQRLYEQMLEPKWVISM 130 Query: 127 GSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181 GSCAN GG Y YSVV+G D+ +PVD+YVPGCPP EA + G++LLQ+ I + Sbjct: 131 GSCANSGGMY-DIYSVVQGVDKFLPVDVYVPGCPPRPEAFLQGLMLLQESIGQER 184 >gi|283850904|ref|ZP_06368190.1| NADH dehydrogenase I, D subunit [Desulfovibrio sp. FW1012B] gi|283573827|gb|EFC21801.1| NADH dehydrogenase I, D subunit [Desulfovibrio sp. FW1012B] Length = 790 Score = 202 bits (513), Expect = 3e-50, Method: Composition-based stats. Identities = 77/140 (55%), Positives = 99/140 (70%), Gaps = 2/140 (1%) Query: 39 LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQSDVMI 97 L D ++ WAR S+ FGL+CC VE A PRYD+ R+G R SPRQ+DV+I Sbjct: 8 LFRPTDHIINWARKNSIWPFFFGLSCCFVEEATAWGPRYDIARYGSEVFRGSPRQADVLI 67 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 V+GTL K+A R+Y+QM +P++VISMGSC+N GG Y YSVV+G D+I+PVD+Y+P Sbjct: 68 VSGTLFTKVAPVALRLYEQMSDPKWVISMGSCSNSGGMY-DVYSVVQGTDQILPVDVYIP 126 Query: 158 GCPPTAEALIYGILLLQKKI 177 GCPP EAL G+LLLQKKI Sbjct: 127 GCPPRPEALFDGLLLLQKKI 146 >gi|150026262|ref|YP_001297088.1| NADH dehydrogenase I, B subunit [Flavobacterium psychrophilum JIP02/86] gi|238065145|sp|A6H1R3|NUOB_FLAPJ RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|149772803|emb|CAL44287.1| NADH dehydrogenase I, B subunit [Flavobacterium psychrophilum JIP02/86] Length = 181 Score = 202 bits (513), Expect = 3e-50, Method: Composition-based stats. Identities = 65/158 (41%), Positives = 105/158 (66%), Gaps = 2/158 (1%) Query: 22 VDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLER 81 + + +T +GF T ++ +V AR S+ + F +CC +E M YDL R Sbjct: 3 SNINIVEAPEGVTGEGFFATKLNDVVGLARANSMWPLPFATSCCGIEFMATMASHYDLAR 62 Query: 82 FGFAPRA-SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSY 140 FG + SPRQ+D+++V GT++ KMA LR+VY+QM EPR+VI++G+CA+ GG + +Y Sbjct: 63 FGSERVSFSPRQADMLMVMGTISKKMAPILRQVYEQMAEPRWVIAVGACASSGGIF-DTY 121 Query: 141 SVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 SV++G D+++PVD+YVPGCPP E ++ G++ LQ+ ++ Sbjct: 122 SVLQGIDKVIPVDVYVPGCPPRPEQIVDGVMRLQELVK 159 >gi|301061312|ref|ZP_07202094.1| NADH dehydrogenase, C subunit [delta proteobacterium NaphS2] gi|300444631|gb|EFK08614.1| NADH dehydrogenase, C subunit [delta proteobacterium NaphS2] Length = 484 Score = 202 bits (513), Expect = 3e-50, Method: Composition-based stats. Identities = 71/150 (47%), Positives = 104/150 (69%), Gaps = 2/150 (1%) Query: 36 KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSD 94 + +++ D ++ WAR S M FGL+CC +E M RYD+ RFG R +PRQ+D Sbjct: 8 EDMVISMADDVINWARQYSFWPMFFGLSCCFIEQMVTYTSRYDISRFGAEVLRGTPRQAD 67 Query: 95 VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154 ++I +GT+ K+A + R+Y+QMPEP++V+SMGSC+N GG Y YSVV+G D+I+PVDI Sbjct: 68 LLITSGTIFKKIAPVVLRLYEQMPEPKWVMSMGSCSNCGGMY-DVYSVVQGIDQILPVDI 126 Query: 155 YVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 Y+PGCPP EA++ G+ LLQKK++ + Sbjct: 127 YIPGCPPRPEAVLQGLTLLQKKVKGERPTR 156 >gi|320540451|ref|ZP_08040101.1| putative NADH:ubiquinone oxidoreductase, chain B [Serratia symbiotica str. Tucson] gi|320029382|gb|EFW11411.1| putative NADH:ubiquinone oxidoreductase, chain B [Serratia symbiotica str. Tucson] Length = 224 Score = 201 bits (512), Expect = 3e-50, Method: Composition-based stats. Identities = 76/185 (41%), Positives = 110/185 (59%), Gaps = 5/185 (2%) Query: 1 MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHK---GFLVTSVDQLVTWARTGSLMW 57 M T + L+K + + ++ G L +V +V W R S+ Sbjct: 1 MDYTLTRIEPNGENDRYPLQKQEIVADPLEQQVHRTVYMGKLEHAVHDMVNWGRKNSIWP 60 Query: 58 MTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQ 116 FGL+CC VEM+ + +D+ RFG RASPRQ+D+M+VAGT KMA ++R+Y+Q Sbjct: 61 YNFGLSCCYVEMVNSFTAVHDVARFGAEVLRASPRQADLMVVAGTCFTKMAPVIQRLYEQ 120 Query: 117 MPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKK 176 M EP++VISMG+CAN GG Y YSVV+G D+ +PVD+Y+PGCPP EA + ++LLQ+ Sbjct: 121 MLEPKWVISMGACANSGGMY-DIYSVVQGVDKFLPVDVYIPGCPPRPEAYMQALMLLQES 179 Query: 177 IRRVG 181 I + Sbjct: 180 IGKER 184 >gi|332830189|gb|EGK02817.1| NADH-quinone oxidoreductase subunit B [Dysgonomonas gadei ATCC BAA-286] Length = 183 Score = 201 bits (512), Expect = 3e-50, Method: Composition-based stats. Identities = 63/145 (43%), Positives = 97/145 (66%), Gaps = 2/145 (1%) Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQSDV 95 GF T D ++ AR SL + F +CC +E M YD+ RFG SPRQ+D+ Sbjct: 20 GFFATKFDYVIGLARANSLWPLPFATSCCGIEFMATMASTYDMGRFGAERNSFSPRQADM 79 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155 ++V GT++ KMA LR VY+QM EP++VI++G+CA+ GG + +YSV++G D+++PVD+Y Sbjct: 80 LLVMGTISKKMAPILRHVYEQMAEPKWVIAVGACASSGGIF-DTYSVLQGIDKVIPVDVY 138 Query: 156 VPGCPPTAEALIYGILLLQKKIRRV 180 VPGCPP E ++ G++ LQ+ ++ Sbjct: 139 VPGCPPRPEQILDGVMQLQELVKHE 163 >gi|94677027|ref|YP_588824.1| NADH dehydrogenase subunit B [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] gi|238055242|sp|Q1LT90|NUOB_BAUCH RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|94220177|gb|ABF14336.1| NADH-quinone oxidoreductase, B subunit [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] Length = 224 Score = 201 bits (512), Expect = 3e-50, Method: Composition-based stats. Identities = 81/185 (43%), Positives = 110/185 (59%), Gaps = 5/185 (2%) Query: 1 MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHK---GFLVTSVDQLVTWARTGSLMW 57 M T S ++ SL++ D+ I + G L + +V W R SL Sbjct: 1 MNYTLTRILSNSKENRKSLQEDDSATLLIEQHVNSNIYLGKLKHILKSIVKWGRGNSLWP 60 Query: 58 MTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQ 116 FGL+CC VEM + +D+ RFG RASPRQ+D M++AGT KMA ++R+YDQ Sbjct: 61 YNFGLSCCYVEMTTSFTAVHDVARFGSEVIRASPRQADFMVIAGTPFIKMAPVIKRLYDQ 120 Query: 117 MPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKK 176 M EP++VISMGSCAN GG Y YSVV+G D+ +PVD+Y+PGCPP EA I +LLL++ Sbjct: 121 MLEPKWVISMGSCANSGGMY-DIYSVVQGVDKFLPVDVYIPGCPPRPEAYIQALLLLKEA 179 Query: 177 IRRVG 181 I + Sbjct: 180 IGKEQ 184 >gi|330810464|ref|YP_004354926.1| NADH-quinone oxidoreductase subunit B [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|9719438|gb|AAF97798.1|AF281148_2 NADH dehydrogenase I subunit B [Pseudomonas fluorescens] gi|327378572|gb|AEA69922.1| NADH-quinone oxidoreductase subunit B [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 224 Score = 201 bits (512), Expect = 3e-50, Method: Composition-based stats. Identities = 75/175 (42%), Positives = 107/175 (61%), Gaps = 7/175 (4%) Query: 12 SGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQL----VTWARTGSLMWMTFGLACCAV 67 + + + + + ++ HK + ++ + V W R SL FGL+CC V Sbjct: 12 APNEQYPIGERETVADPLEDQV-HKNIFMGKLEDVLNSTVNWGRKNSLWPYNFGLSCCYV 70 Query: 68 EMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISM 126 EM A +D+ RFG RASPRQ+D M++AGT KMA ++R+Y+QM EP++VISM Sbjct: 71 EMTTAFTAPHDIARFGAEVIRASPRQADFMVIAGTCFIKMAPIIQRLYEQMLEPKWVISM 130 Query: 127 GSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181 GSCAN GG Y YSVV+G D+ +PVD+YVPGCPP EA + G++LLQ+ I + Sbjct: 131 GSCANSGGMY-DIYSVVQGVDKFLPVDVYVPGCPPRPEAFLQGLMLLQESIGQER 184 >gi|77459826|ref|YP_349333.1| NADH dehydrogenase subunit B [Pseudomonas fluorescens Pf0-1] gi|123604056|sp|Q3KA62|NUOB_PSEPF RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|77383829|gb|ABA75342.1| NADH dehydrogenase subunit B [Pseudomonas fluorescens Pf0-1] Length = 224 Score = 201 bits (512), Expect = 3e-50, Method: Composition-based stats. Identities = 75/175 (42%), Positives = 107/175 (61%), Gaps = 7/175 (4%) Query: 12 SGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQL----VTWARTGSLMWMTFGLACCAV 67 + + + + + ++ HK + ++ + V W R SL FGL+CC V Sbjct: 12 APNEQYPIGQRETVSDPLEDQV-HKNIFMGKLEDVLSGAVNWGRKNSLWPYNFGLSCCYV 70 Query: 68 EMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISM 126 EM A +D+ RFG RASPRQ+D M++AGT KMA ++R+Y+QM EP++VISM Sbjct: 71 EMTTAFTAPHDIARFGAEVIRASPRQADFMVIAGTCFIKMAPIIQRLYEQMLEPKWVISM 130 Query: 127 GSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181 GSCAN GG Y YSVV+G D+ +PVD+YVPGCPP EA + G++LLQ+ I + Sbjct: 131 GSCANSGGMY-DIYSVVQGVDKFLPVDVYVPGCPPRPEAFLQGLMLLQESIGQER 184 >gi|84494929|ref|ZP_00994048.1| NADH dehydrogenase beta subunit [Janibacter sp. HTCC2649] gi|84384422|gb|EAQ00302.1| NADH dehydrogenase beta subunit [Janibacter sp. HTCC2649] Length = 198 Score = 201 bits (512), Expect = 3e-50, Method: Composition-based stats. Identities = 74/152 (48%), Positives = 105/152 (69%), Gaps = 2/152 (1%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89 E GF++T+++ + + R S+ TFGLACCA+EMM P YD+ RFG A+ Sbjct: 4 EEKLPAGFVLTTLESVAGYMRKASIWPATFGLACCAIEMMAVGTPDYDIARFGMERFSAT 63 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQ+D+MIVAG ++NKMA +R+VYDQMP P++VISMG CA+ GG ++ Y++V+G D I Sbjct: 64 PRQADLMIVAGRVSNKMAPVVRQVYDQMPNPKWVISMGVCASSGGMFNN-YAIVQGVDHI 122 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181 +PVDIY+PGCPP E L+ I+ L +I+ Sbjct: 123 IPVDIYLPGCPPRPEMLLNAIIELHDQIQNSK 154 >gi|312961687|ref|ZP_07776185.1| NADH-quinone oxidoreductase subunit B [Pseudomonas fluorescens WH6] gi|311283946|gb|EFQ62529.1| NADH-quinone oxidoreductase subunit B [Pseudomonas fluorescens WH6] Length = 224 Score = 201 bits (512), Expect = 4e-50, Method: Composition-based stats. Identities = 75/175 (42%), Positives = 107/175 (61%), Gaps = 7/175 (4%) Query: 12 SGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQL----VTWARTGSLMWMTFGLACCAV 67 + + + + + ++ HK + ++ + V W R SL FGL+CC V Sbjct: 12 APNEQYPIGERETVSDPLEDQV-HKNIYMGKLEDVLSGAVNWGRKNSLWPYNFGLSCCYV 70 Query: 68 EMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISM 126 EM A +D+ RFG RASPRQ+D M++AGT KMA ++R+Y+QM EP++VISM Sbjct: 71 EMTTAFTAPHDIARFGAEVIRASPRQADFMVIAGTCFIKMAPIIQRLYEQMLEPKWVISM 130 Query: 127 GSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181 GSCAN GG Y YSVV+G D+ +PVD+YVPGCPP EA + G++LLQ+ I + Sbjct: 131 GSCANSGGMY-DIYSVVQGVDKFLPVDVYVPGCPPRPEAFLQGLMLLQESIGKER 184 >gi|229591254|ref|YP_002873373.1| NADH dehydrogenase subunit B [Pseudomonas fluorescens SBW25] gi|259514679|sp|C3JY82|NUOB_PSEFS RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|229363120|emb|CAY50138.1| NADH-quinone oxidoreductase chain B [Pseudomonas fluorescens SBW25] Length = 224 Score = 201 bits (512), Expect = 4e-50, Method: Composition-based stats. Identities = 75/175 (42%), Positives = 107/175 (61%), Gaps = 7/175 (4%) Query: 12 SGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQL----VTWARTGSLMWMTFGLACCAV 67 + + + + + ++ HK + ++ + V W R SL FGL+CC V Sbjct: 12 APNDQYPIGERETVSDPLEDQV-HKNIYMGKLEDVLSGAVNWGRKNSLWPYNFGLSCCYV 70 Query: 68 EMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISM 126 EM A +D+ RFG RASPRQ+D M++AGT KMA ++R+Y+QM EP++VISM Sbjct: 71 EMTTAFTAPHDIARFGAEVIRASPRQADFMVIAGTCFIKMAPIIQRLYEQMLEPKWVISM 130 Query: 127 GSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181 GSCAN GG Y YSVV+G D+ +PVD+YVPGCPP EA + G++LLQ+ I + Sbjct: 131 GSCANSGGMY-DIYSVVQGVDKFLPVDVYVPGCPPRPEAFLQGLMLLQESIGKER 184 >gi|71410632|ref|XP_807601.1| NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial precursor [Trypanosoma cruzi strain CL gi|71652884|ref|XP_815090.1| NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial precursor [Trypanosoma cruzi strain CL gi|70871638|gb|EAN85750.1| NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial precursor, putative [Trypanosoma cruzi] gi|70880118|gb|EAN93239.1| NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial precursor, putative [Trypanosoma cruzi] Length = 202 Score = 201 bits (511), Expect = 4e-50, Method: Composition-based stats. Identities = 84/137 (61%), Positives = 110/137 (80%) Query: 42 SVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGT 101 ++ L W T SL +TFGLACCAVEMM A RYDL+RFG PR +PRQ++++IV+GT Sbjct: 55 TLHDLTEWCLTYSLWPLTFGLACCAVEMMHAYAARYDLDRFGIVPRPTPRQAEIIIVSGT 114 Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP 161 +TNKMA LR +Y QM P++VISMGSCANGGGYYH+SY+V+RGC+R +PVD ++PGCPP Sbjct: 115 VTNKMAPLLRNIYVQMVNPKWVISMGSCANGGGYYHFSYAVLRGCERAIPVDFWIPGCPP 174 Query: 162 TAEALIYGILLLQKKIR 178 +AE+L++ + LQKKIR Sbjct: 175 SAESLVFCLHTLQKKIR 191 >gi|322819469|gb|EFZ26582.1| NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial precursor, putative [Trypanosoma cruzi] Length = 189 Score = 201 bits (511), Expect = 4e-50, Method: Composition-based stats. Identities = 84/137 (61%), Positives = 110/137 (80%) Query: 42 SVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGT 101 ++ L W T SL +TFGLACCAVEMM A RYDL+RFG PR +PRQ++++IV+GT Sbjct: 42 TLHDLTEWCLTYSLWPLTFGLACCAVEMMHAYAARYDLDRFGIVPRPTPRQAEIIIVSGT 101 Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP 161 +TNKMA LR +Y QM P++VISMGSCANGGGYYH+SY+V+RGC+R +PVD ++PGCPP Sbjct: 102 VTNKMAPLLRNIYVQMVNPKWVISMGSCANGGGYYHFSYAVLRGCERAIPVDFWIPGCPP 161 Query: 162 TAEALIYGILLLQKKIR 178 +AE+L++ + LQKKIR Sbjct: 162 SAESLVFCLHTLQKKIR 178 >gi|304413372|ref|ZP_07394845.1| NADH:ubiquinone oxidoreductase, chain B [Candidatus Regiella insecticola LSR1] gi|304284215|gb|EFL92608.1| NADH:ubiquinone oxidoreductase, chain B [Candidatus Regiella insecticola LSR1] Length = 225 Score = 201 bits (511), Expect = 4e-50, Method: Composition-based stats. Identities = 76/186 (40%), Positives = 107/186 (57%), Gaps = 6/186 (3%) Query: 1 MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVD----QLVTWARTGSLM 56 M T + L+ + + H+ + ++ +V W R SL Sbjct: 1 MDYTLTRAEPSGENDRYPLQSQETVSGDPLEQHVHRSVYMGKLENALHDMVNWGRKNSLW 60 Query: 57 WMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYD 115 FGL+CC VEM+ + +D+ RFG RASPRQ+D M+VAGT KMA ++R+Y+ Sbjct: 61 PYNFGLSCCYVEMVTSFTAVHDVARFGAEVLRASPRQADFMVVAGTCFTKMAPVIQRLYE 120 Query: 116 QMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175 QM EP++VISMG+CAN GG Y YSVV+G D+ +PVD+Y+PGCPP EA + +LLLQK Sbjct: 121 QMLEPKWVISMGACANSGGMY-DIYSVVQGVDKFLPVDVYIPGCPPRPEAYMQALLLLQK 179 Query: 176 KIRRVG 181 I + Sbjct: 180 SIDKER 185 >gi|290559400|gb|EFD92732.1| NADH-quinone oxidoreductase, B subunit [Candidatus Parvarchaeum acidophilus ARMAN-5] Length = 172 Score = 201 bits (511), Expect = 4e-50, Method: Composition-based stats. Identities = 66/141 (46%), Positives = 95/141 (67%), Gaps = 1/141 (0%) Query: 43 VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA-SPRQSDVMIVAGT 101 +D ++ W R+ SL +TFG +CCA+EMM + D +R G SPRQSD+++V+GT Sbjct: 24 IDTVLNWGRSNSLWPLTFGTSCCAIEMMTFGATKVDSDRLGVLFVGDSPRQSDLILVSGT 83 Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP 161 +T KMA L VY+QMP+P+YVI++G+C GG YH SY+ + G DRI+PVD +VPGCPP Sbjct: 84 ITKKMARRLLNVYEQMPDPKYVIAVGACNISGGLYHDSYNTIDGIDRIMPVDAFVPGCPP 143 Query: 162 TAEALIYGILLLQKKIRRVGN 182 E + + +LQK I+ + Sbjct: 144 RPEEFLDAVRVLQKLIKENKS 164 >gi|300771676|ref|ZP_07081551.1| NADH-quinone oxidoreductase subunit B [Sphingobacterium spiritivorum ATCC 33861] gi|300761665|gb|EFK58486.1| NADH-quinone oxidoreductase subunit B [Sphingobacterium spiritivorum ATCC 33861] Length = 184 Score = 201 bits (511), Expect = 4e-50, Method: Composition-based stats. Identities = 68/160 (42%), Positives = 102/160 (63%), Gaps = 2/160 (1%) Query: 22 VDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLER 81 + + + GF T++D+ + AR SL + F +CC +E M YDL R Sbjct: 2 SNVKLAEAPPGVEGSGFFATTLDKAIGLARANSLWPLPFATSCCGIEFMATMGSTYDLAR 61 Query: 82 FGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSY 140 FG P SPRQ+D+++V GT+ KMA L++VY QM EPR+VI++G+CA+ GG + +Y Sbjct: 62 FGAERPSFSPRQADMLLVMGTIAKKMAPVLKQVYVQMAEPRWVIAVGACASSGGIF-DTY 120 Query: 141 SVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 SV++G D I+PVD+YVPGCPP EA++ G+L LQ+ ++ Sbjct: 121 SVLQGIDEIIPVDVYVPGCPPRPEAILDGVLRLQEIVKNE 160 >gi|126666305|ref|ZP_01737284.1| NADH dehydrogenase subunit B [Marinobacter sp. ELB17] gi|126629106|gb|EAZ99724.1| NADH dehydrogenase subunit B [Marinobacter sp. ELB17] Length = 226 Score = 201 bits (511), Expect = 4e-50, Method: Composition-based stats. Identities = 78/184 (42%), Positives = 105/184 (57%), Gaps = 5/184 (2%) Query: 2 GLTTVNQKIISGQSSCSLEKVDADFSRISSEITHK---GFLVTSVDQLVTWARTGSLMWM 58 LT + + L K + ++ G L +++ V W R SL Sbjct: 4 SLTRAEDAVAAENDRYPLGKQQQVEDPMRQQVHRSVYTGKLKDALNSTVNWGRKNSLWPY 63 Query: 59 TFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQM 117 FGL+CC VEM A +D+ RFG RASPRQ+D M++AGT KMA ++++YDQM Sbjct: 64 NFGLSCCYVEMTTAFTSPHDIARFGAEVIRASPRQADFMVIAGTCFVKMAPIIQQLYDQM 123 Query: 118 PEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 EP++VISMGSCAN GG Y YSVV+G D+ +PVD+YV GCPP EA + G+ LLQ I Sbjct: 124 LEPKWVISMGSCANSGGMY-DIYSVVQGVDKFLPVDVYVAGCPPRPEAFLQGLQLLQDSI 182 Query: 178 RRVG 181 + Sbjct: 183 QEER 186 >gi|218528061|sp|Q67P21|NUOB1_SYMTH RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName: Full=NADH dehydrogenase I subunit B 1; AltName: Full=NDH-1 subunit B 1 Length = 166 Score = 201 bits (511), Expect = 4e-50, Method: Composition-based stats. Identities = 75/146 (51%), Positives = 112/146 (76%), Gaps = 3/146 (2%) Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQ-ASMPRYDLERFGFA-PRASPRQSD 94 GF+ T+VD + WA++ S+ +TFGLACCA+EMM AS PRYD+ RFG RASPRQ+D Sbjct: 12 GFVTTTVDSFLRWAQSNSIWPLTFGLACCAIEMMNLASGPRYDIARFGSEAFRASPRQAD 71 Query: 95 VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154 ++ ++G ++NKMA ++RVY QM EP++V++ G+CA+ GG + +Y++++G D ++PVDI Sbjct: 72 LIFISGRVSNKMAPVIKRVYSQMLEPKWVVAFGACASSGGIF-DNYAIMQGVDNLLPVDI 130 Query: 155 YVPGCPPTAEALIYGILLLQKKIRRV 180 YVPGCPPT EA+IY + L+ +IR+ Sbjct: 131 YVPGCPPTPEAVIYAVQKLRDRIRKE 156 >gi|328952909|ref|YP_004370243.1| NAD(P)H-quinone oxidoreductase subunit K [Desulfobacca acetoxidans DSM 11109] gi|328453233|gb|AEB09062.1| NAD(P)H-quinone oxidoreductase subunit K [Desulfobacca acetoxidans DSM 11109] Length = 162 Score = 201 bits (511), Expect = 4e-50, Method: Composition-based stats. Identities = 74/159 (46%), Positives = 106/159 (66%), Gaps = 3/159 (1%) Query: 29 ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APR 87 + + +++++ R SL +TFGLACCA+EMM A R+DL+RFG R Sbjct: 1 MEKKTGEPLIQFAVLEEVLNLCRANSLWPITFGLACCAIEMMAAGASRFDLDRFGAGVFR 60 Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY--HYSYSVVRG 145 SPRQSD+MIVAGT++ KMA + R+Y+QMP P++VI+MG+CA GG + Y++V G Sbjct: 61 PSPRQSDLMIVAGTISKKMADPVIRLYEQMPAPKWVIAMGNCAISGGPFLYEGQYAIVPG 120 Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 D+I+PVD+YVPGCPP E L+ GIL L++KI ++ Sbjct: 121 ADQIIPVDVYVPGCPPRPEGLLEGILQLEEKITNRPRLR 159 >gi|227535970|ref|ZP_03966019.1| NADH dehydrogenase I, chain B [Sphingobacterium spiritivorum ATCC 33300] gi|227244213|gb|EEI94228.1| NADH dehydrogenase I, chain B [Sphingobacterium spiritivorum ATCC 33300] Length = 184 Score = 201 bits (511), Expect = 4e-50, Method: Composition-based stats. Identities = 68/160 (42%), Positives = 102/160 (63%), Gaps = 2/160 (1%) Query: 22 VDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLER 81 + + + GF T++D+ + AR SL + F +CC +E M YDL R Sbjct: 2 SNVKLAEAPPGVEGSGFFATTLDKAIGLARANSLWPLPFATSCCGIEFMATMGSTYDLAR 61 Query: 82 FGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSY 140 FG P SPRQ+D+++V GT+ KMA L++VY QM EPR+VI++G+CA+ GG + +Y Sbjct: 62 FGAERPSFSPRQADMLLVMGTIAKKMAPVLKQVYVQMAEPRWVIAVGACASSGGIF-DTY 120 Query: 141 SVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 SV++G D I+PVD+YVPGCPP EA++ G+L LQ+ ++ Sbjct: 121 SVLQGIDEIIPVDVYVPGCPPRPEAILDGVLRLQEIVKNE 160 >gi|300723691|ref|YP_003712998.1| NADH dehydrogenase I subunit B [Xenorhabdus nematophila ATCC 19061] gi|297630215|emb|CBJ90866.1| NADH dehydrogenase I chain B [Xenorhabdus nematophila ATCC 19061] Length = 224 Score = 201 bits (511), Expect = 4e-50, Method: Composition-based stats. Identities = 74/172 (43%), Positives = 105/172 (61%), Gaps = 5/172 (2%) Query: 14 QSSCSLEKVDADFSRISSEITHK---GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMM 70 L+K + + + G L ++ +V W R SL FGL+CC VEM+ Sbjct: 14 NDRYPLQKQEIVSDPLEQHVHRSVYMGKLENALHDMVNWGRKNSLWPYNFGLSCCYVEMV 73 Query: 71 QASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSC 129 + +D+ RFG RASPRQ+D M+++GT KMA ++R+YDQM EP++VISMG+C Sbjct: 74 TSFTAVHDVARFGAEVLRASPRQADFMVISGTCFVKMAPVIQRLYDQMLEPKWVISMGAC 133 Query: 130 ANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181 AN GG Y YSVV+G D+ +PVD+Y+PGCPP EA + +LLLQ+ I + Sbjct: 134 ANSGGMY-DIYSVVQGVDKFIPVDVYIPGCPPRPEAYMQALLLLQESIGKER 184 >gi|197121687|ref|YP_002133638.1| NADH dehydrogenase subunit B [Anaeromyxobacter sp. K] gi|220916483|ref|YP_002491787.1| NADH-quinone oxidoreductase, B subunit [Anaeromyxobacter dehalogenans 2CP-1] gi|238065005|sp|B4UIA4|NUOB1_ANASK RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName: Full=NADH dehydrogenase I subunit B 1; AltName: Full=NDH-1 subunit B 1 gi|196171536|gb|ACG72509.1| NADH-quinone oxidoreductase, B subunit [Anaeromyxobacter sp. K] gi|219954337|gb|ACL64721.1| NADH-quinone oxidoreductase, B subunit [Anaeromyxobacter dehalogenans 2CP-1] Length = 173 Score = 201 bits (511), Expect = 5e-50, Method: Composition-based stats. Identities = 83/139 (59%), Positives = 104/139 (74%) Query: 40 VTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVA 99 + +D L+ AR SL ++TFGLACC +E+MQ PR D+ RFG PRASPRQ+D MIVA Sbjct: 18 TSQLDNLINLARASSLYYLTFGLACCGIELMQTGGPRADVMRFGAIPRASPRQADFMIVA 77 Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGC 159 GTLT KMA R +YDQMPEP+YVISMGSC+N GG + YSV +G D+++PVD+YVPGC Sbjct: 78 GTLTYKMAERARLLYDQMPEPKYVISMGSCSNCGGLFQLGYSVCKGVDKVIPVDVYVPGC 137 Query: 160 PPTAEALIYGILLLQKKIR 178 PP EAL G+L LQ+ +R Sbjct: 138 PPRPEALTEGLLRLQEIVR 156 >gi|99034974|ref|ZP_01314777.1| hypothetical protein Wendoof_01000400 [Wolbachia endosymbiont of Drosophila willistoni TSC#14030-0811.24] Length = 161 Score = 201 bits (511), Expect = 5e-50, Method: Composition-based stats. Identities = 99/130 (76%), Positives = 111/130 (85%), Gaps = 4/130 (3%) Query: 35 HKGFLVTSV----DQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP 90 +GFLVT D ++ WAR+GSL MTFGLACCAVEMM + RYDL+R+G RASP Sbjct: 16 KEGFLVTKFGDLTDYVMNWARSGSLWPMTFGLACCAVEMMHTASSRYDLDRYGIMFRASP 75 Query: 91 RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150 RQSDVMIVAGTLTNKMA+ALR+VYDQM +P+YVISMGSCANGGGYYHYSYSVVRGCDRIV Sbjct: 76 RQSDVMIVAGTLTNKMAAALRKVYDQMADPKYVISMGSCANGGGYYHYSYSVVRGCDRIV 135 Query: 151 PVDIYVPGCP 160 PVD+YVPGCP Sbjct: 136 PVDVYVPGCP 145 >gi|22002572|gb|AAM82723.1| NdhK [Synechococcus elongatus PCC 7942] Length = 235 Score = 200 bits (510), Expect = 5e-50, Method: Composition-based stats. Identities = 61/163 (37%), Positives = 94/163 (57%), Gaps = 1/163 (0%) Query: 16 SCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMP 75 + E + ++ + ++T++D L WAR SL + +G ACC +E Sbjct: 4 TNPAEIRNPAAPPEITQGLSENVILTTLDDLYNWARLSSLWPLMYGTACCFIEFAALIGS 63 Query: 76 RYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY 135 R+D +RF + + V +T KMA AL R+Y+QMPEP+YVI+MG+C GG Sbjct: 64 RFDFDRFAWCLVVASAGRFVDHKPVPVTMKMAPALVRLYEQMPEPKYVIAMGACTITGGM 123 Query: 136 YH-YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 + S + VRG D+++PVD+Y+PGCPP EA+I I+ L+KK+ Sbjct: 124 FSADSTTTVRGVDKLLPVDVYIPGCPPRPEAIIDAIVKLRKKV 166 >gi|95928469|ref|ZP_01311217.1| NADH-quinone oxidoreductase, B subunit [Desulfuromonas acetoxidans DSM 684] gi|95135740|gb|EAT17391.1| NADH-quinone oxidoreductase, B subunit [Desulfuromonas acetoxidans DSM 684] Length = 196 Score = 200 bits (510), Expect = 5e-50, Method: Composition-based stats. Identities = 78/137 (56%), Positives = 101/137 (73%), Gaps = 3/137 (2%) Query: 44 DQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQSDVMIVAGTL 102 D+++ R SL MTFGLACCA+EMM + M R+D+ R+G R SPRQSD+MIVAGT+ Sbjct: 44 DKILNLCRANSLWPMTFGLACCAIEMMCSGMARFDISRYGAEVFRPSPRQSDLMIVAGTV 103 Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH--YSYSVVRGCDRIVPVDIYVPGCP 160 KMA A+ +Y+QMP PRYVI++G+CA GG + +Y VV G D+++PVD+YVPGCP Sbjct: 104 NKKMAPAVVTLYEQMPAPRYVIALGNCAISGGPFAVEANYDVVLGVDQLIPVDVYVPGCP 163 Query: 161 PTAEALIYGILLLQKKI 177 P EALI GIL LQ+KI Sbjct: 164 PRPEALIEGILQLQEKI 180 >gi|145592956|ref|YP_001157253.1| NADH-quinone oxidoreductase, B subunit [Salinispora tropica CNB-440] gi|238065020|sp|A4X1X5|NUOB1_SALTO RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName: Full=NADH dehydrogenase I subunit B 1; AltName: Full=NDH-1 subunit B 1 gi|145302293|gb|ABP52875.1| NADH-quinone oxidoreductase, B subunit [Salinispora tropica CNB-440] Length = 188 Score = 200 bits (510), Expect = 5e-50, Method: Composition-based stats. Identities = 77/133 (57%), Positives = 102/133 (76%), Gaps = 1/133 (0%) Query: 46 LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS-PRQSDVMIVAGTLTN 104 ++ W R SL FGLACCA+E + SM R+D R G P A PRQ+D+M+V+GT+T+ Sbjct: 14 VLNWGRRYSLWVFNFGLACCAIEFIATSMSRHDFMRLGVIPFAHGPRQADLMVVSGTVTD 73 Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164 KMA A++R+YDQMPEP+YVIS G+C+N GG Y SYSV +G D+++PVD+YVPGCPP E Sbjct: 74 KMAPAIKRLYDQMPEPKYVISFGACSNCGGPYWDSYSVTKGVDQLIPVDVYVPGCPPRPE 133 Query: 165 ALIYGILLLQKKI 177 AL++GIL LQ+KI Sbjct: 134 ALLHGILRLQEKI 146 >gi|238753753|ref|ZP_04615114.1| NADH-quinone oxidoreductase subunit B [Yersinia ruckeri ATCC 29473] gi|238707989|gb|EEQ00346.1| NADH-quinone oxidoreductase subunit B [Yersinia ruckeri ATCC 29473] Length = 225 Score = 200 bits (510), Expect = 5e-50, Method: Composition-based stats. Identities = 77/176 (43%), Positives = 111/176 (63%), Gaps = 6/176 (3%) Query: 7 NQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCA 66 ++ + Q + S + ++ D R + G L ++ +V W R SL FGL+CC Sbjct: 15 DRYPLQSQETISGDPLEQDIHR----SVYMGKLEHAMHDMVNWGRKNSLWPYNFGLSCCY 70 Query: 67 VEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVIS 125 VEM+ + +D+ RFG RASPRQ+D M+VAGT KMA ++R+Y+QM EP++VIS Sbjct: 71 VEMVTSFTAVHDVARFGAEVLRASPRQADFMVVAGTCFTKMAPVIQRLYEQMLEPKWVIS 130 Query: 126 MGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181 MG+CAN GG Y YSVV+G D+ +PVD+Y+PGCPP EA + +LLLQ+ I + Sbjct: 131 MGACANSGGMY-DIYSVVQGVDKFLPVDVYIPGCPPRPEAYMQALLLLQESIGKER 185 >gi|71892265|ref|YP_277999.1| NADH dehydrogenase subunit B [Candidatus Blochmannia pennsylvanicus str. BPEN] gi|123640866|sp|Q492H7|NUOB_BLOPB RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|71796371|gb|AAZ41122.1| NADH dehydrogenase I chain B, binds FeS cluster N2 [Candidatus Blochmannia pennsylvanicus str. BPEN] Length = 236 Score = 200 bits (510), Expect = 5e-50, Method: Composition-based stats. Identities = 78/174 (44%), Positives = 103/174 (59%), Gaps = 5/174 (2%) Query: 12 SGQSSCSLEKVDADFSRISSEITHK---GFLVTSVDQLVTWARTGSLMWMTFGLACCAVE 68 S L++ + I G L + ++V W R SL FGL+CC VE Sbjct: 13 SEDEQYPLQEKKIVTDPLEKNIQRNVFFGKLSAFLHKIVNWGRGNSLWPYNFGLSCCYVE 72 Query: 69 MMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMG 127 M A +D+ RFG RASPRQ+D M++AGT KM ++R+YDQM EP++VISMG Sbjct: 73 MTTAFTAIHDVARFGSEVLRASPRQADFMVIAGTPFLKMVPVIQRLYDQMLEPKWVISMG 132 Query: 128 SCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181 +CAN GG Y YSVV+G D+ +PVD+Y+PGCPP EA I G+LLL+K I Sbjct: 133 ACANSGGMY-DIYSVVQGVDKFLPVDLYIPGCPPRPEAYIQGLLLLKKSINEER 185 >gi|156933123|ref|YP_001437039.1| NADH dehydrogenase subunit B [Cronobacter sakazakii ATCC BAA-894] gi|260598704|ref|YP_003211275.1| NADH dehydrogenase subunit B [Cronobacter turicensis z3032] gi|238065141|sp|A7MH23|NUOB_ENTS8 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|156531377|gb|ABU76203.1| hypothetical protein ESA_00933 [Cronobacter sakazakii ATCC BAA-894] gi|260217881|emb|CBA32432.1| NADH-quinone oxidoreductase subunit B [Cronobacter turicensis z3032] Length = 224 Score = 200 bits (510), Expect = 5e-50, Method: Composition-based stats. Identities = 75/172 (43%), Positives = 105/172 (61%), Gaps = 5/172 (2%) Query: 14 QSSCSLEKVDADFSRISSEITHK---GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMM 70 L+K + + + G L ++ +V W R SL FGL+CC VEM+ Sbjct: 14 NDRYPLQKQEIVTDPLEQHVHRSVYMGKLEHALHDMVNWGRKNSLWPYNFGLSCCYVEMV 73 Query: 71 QASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSC 129 + +D+ RFG RASPRQ+D M+VAGT KMA ++R+YDQM EP++VISMG+C Sbjct: 74 TSFTAVHDVARFGAEVLRASPRQADFMVVAGTPFTKMAPVIQRLYDQMLEPKWVISMGAC 133 Query: 130 ANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181 AN GG Y YSVV+G D+ +PVD+Y+PGCPP EA + ++LLQ+ I + Sbjct: 134 ANSGGMY-DIYSVVQGVDKFLPVDVYIPGCPPRPEAYMQALMLLQESIGKER 184 >gi|269926648|ref|YP_003323271.1| NADH-quinone oxidoreductase, B subunit [Thermobaculum terrenum ATCC BAA-798] gi|269790308|gb|ACZ42449.1| NADH-quinone oxidoreductase, B subunit [Thermobaculum terrenum ATCC BAA-798] Length = 175 Score = 200 bits (510), Expect = 5e-50, Method: Composition-based stats. Identities = 87/144 (60%), Positives = 106/144 (73%), Gaps = 2/144 (1%) Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD-LERFGFAPRASPRQSDV 95 L + + WAR SL MTFGLACCA+EMM AS YD +ER G R SPRQSD+ Sbjct: 13 NLLEATQRAIFGWARKSSLWPMTFGLACCAIEMMSASAANYDVMERSGMLFRPSPRQSDL 72 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155 MIVAG++T KMA LRR+YDQMP+P++VISMGSCA+ GG Y +YS ++G D++VPVD+Y Sbjct: 73 MIVAGSVTLKMAPVLRRLYDQMPDPKWVISMGSCASAGGPYP-TYSHLQGVDKVVPVDVY 131 Query: 156 VPGCPPTAEALIYGILLLQKKIRR 179 VPGCPP EAL YGIL LQ I+R Sbjct: 132 VPGCPPVPEALFYGILQLQGMIQR 155 >gi|238061184|ref|ZP_04605893.1| NADH-quinone oxidoreductase, B subunit [Micromonospora sp. ATCC 39149] gi|237882995|gb|EEP71823.1| NADH-quinone oxidoreductase, B subunit [Micromonospora sp. ATCC 39149] Length = 204 Score = 200 bits (510), Expect = 6e-50, Method: Composition-based stats. Identities = 76/133 (57%), Positives = 102/133 (76%), Gaps = 1/133 (0%) Query: 46 LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS-PRQSDVMIVAGTLTN 104 ++ W R SL FGLACCA+E + SM R+D R G P A PRQ+D+M+V+GT+T+ Sbjct: 14 VLNWGRRYSLWVFNFGLACCAIEFIATSMGRHDFIRLGVIPFAHGPRQADLMVVSGTVTD 73 Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164 KMA A++R+Y+QMPEP+YVIS G+C+N GG Y SYSV +G D+++PVD+YVPGCPP E Sbjct: 74 KMAPAIKRLYEQMPEPKYVISFGACSNCGGPYWDSYSVTKGVDQLIPVDVYVPGCPPRPE 133 Query: 165 ALIYGILLLQKKI 177 AL++GIL LQ+KI Sbjct: 134 ALLHGILRLQEKI 146 >gi|33519943|ref|NP_878775.1| NADH dehydrogenase subunit B [Candidatus Blochmannia floridanus] gi|81666912|sp|Q7VRV3|NUOB_BLOFL RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|33504289|emb|CAD83181.1| NADH dehydrogenase I chain B [Candidatus Blochmannia floridanus] Length = 223 Score = 200 bits (510), Expect = 6e-50, Method: Composition-based stats. Identities = 81/182 (44%), Positives = 107/182 (58%), Gaps = 2/182 (1%) Query: 1 MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTF 60 + L NQ S + V + + + G L + + V W R+ SL F Sbjct: 5 LTLARTNQDDDSVYPEQDQKPVADPLDKQIEKNVYFGKLKNLLHKAVNWGRSNSLWPYNF 64 Query: 61 GLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119 GL+CC VEM A +D+ RFG R+SPRQSD M++AGT KM ++R+YDQM E Sbjct: 65 GLSCCYVEMTTAFTAVHDVARFGSEVLRSSPRQSDFMVIAGTPFLKMVPIIQRLYDQMLE 124 Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179 P++VISMGSCAN GG Y YSVV+G D+ +PVDIY+PGCPP EA I +LLL+K I + Sbjct: 125 PKWVISMGSCANSGGMY-DIYSVVQGVDKFLPVDIYIPGCPPRPEAYIQALLLLKKSINK 183 Query: 180 VG 181 Sbjct: 184 ER 185 >gi|325105666|ref|YP_004275320.1| NADH dehydrogenase subunit B [Pedobacter saltans DSM 12145] gi|324974514|gb|ADY53498.1| NADH dehydrogenase subunit B [Pedobacter saltans DSM 12145] Length = 180 Score = 200 bits (510), Expect = 6e-50, Method: Composition-based stats. Identities = 67/164 (40%), Positives = 103/164 (62%), Gaps = 2/164 (1%) Query: 22 VDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLER 81 D + + + GF T++DQ++ AR+ SL + F +CC +E M YD R Sbjct: 2 SDIKMANAPAGVEGSGFFATTLDQVIGLARSHSLWPLPFATSCCGIEFMATMGAHYDFSR 61 Query: 82 FGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSY 140 FG P SPRQ+D+++V GT+ KMA L++VY QM EPR+VI++G+CA+ GG + +Y Sbjct: 62 FGSERPSFSPRQADLLMVMGTIAKKMAPVLKQVYTQMAEPRWVIAVGACASSGGIF-DTY 120 Query: 141 SVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 SV++G D I+PVD+YVPGCPP E +I G +Q+ ++ + + Sbjct: 121 SVLQGIDEIIPVDVYVPGCPPRPEGIIDGFNKIQELVKNESSRR 164 >gi|330834139|ref|YP_004408867.1| NADH-quinone oxidoreductase, B subunit [Metallosphaera cuprina Ar-4] gi|329566278|gb|AEB94383.1| NADH-quinone oxidoreductase, B subunit [Metallosphaera cuprina Ar-4] Length = 170 Score = 200 bits (509), Expect = 7e-50, Method: Composition-based stats. Identities = 68/163 (41%), Positives = 94/163 (57%) Query: 22 VDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLER 81 + + + + + L W + SL F +CC E + R+D ER Sbjct: 7 LTGNLDESARKAAEWLLNKKPIRTLRDWGISFSLWPPHFTTSCCGTEFGAFAAARFDAER 66 Query: 82 FGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYS 141 FG P AS RQS+++ + GTLT KMA A R VYDQMPEP+YVI+MG+C GG + SY+ Sbjct: 67 FGMLPFASSRQSNILTIEGTLTRKMARAARIVYDQMPEPKYVIAMGACILEGGIFWNSYN 126 Query: 142 VVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 V D +PVD+Y+PGCP EA+ G+L+LQKKIR G ++ Sbjct: 127 TVLPSDVGIPVDLYIPGCPIRPEAIARGLLMLQKKIRSQGAIR 169 >gi|238920566|ref|YP_002934081.1| NADH dehydrogenase subunit B [Edwardsiella ictaluri 93-146] gi|269139729|ref|YP_003296430.1| NADH:ubiquinone oxidoreductase 20 kD subunit and related Fe-S oxidoreductase [Edwardsiella tarda EIB202] gi|259514663|sp|C5B8I5|NUOB_EDWI9 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|238870135|gb|ACR69846.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146] gi|267985390|gb|ACY85219.1| NADH:ubiquinone oxidoreductase 20 kD subunit and related Fe-S oxidoreductase [Edwardsiella tarda EIB202] gi|304559596|gb|ADM42260.1| NADH-ubiquinone oxidoreductase chain B [Edwardsiella tarda FL6-60] Length = 224 Score = 200 bits (509), Expect = 7e-50, Method: Composition-based stats. Identities = 74/173 (42%), Positives = 105/173 (60%), Gaps = 5/173 (2%) Query: 13 GQSSCSLEKVDADFSRISSEITHK---GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEM 69 L+K + + + G L ++ +V W R SL FGL+CC VEM Sbjct: 13 DNDRYPLQKQEVVSDPLEQHVHRSVYMGKLDHALHDMVNWGRKNSLWPYNFGLSCCYVEM 72 Query: 70 MQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGS 128 + + +D+ RFG RASPRQ+D M+VAGT KMA ++R+Y+QM EP++VISMG+ Sbjct: 73 VTSFTAVHDVARFGAEVLRASPRQADFMVVAGTCFTKMAPVIQRLYEQMLEPKWVISMGA 132 Query: 129 CANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181 CAN GG Y YSVV+G D+ +PVD+Y+PGCPP EA + ++LLQ+ I + Sbjct: 133 CANSGGMY-DIYSVVQGVDKFIPVDVYIPGCPPRPEAYMQALMLLQESIGQER 184 >gi|269128582|ref|YP_003301952.1| NADH-quinone oxidoreductase subunit B [Thermomonospora curvata DSM 43183] gi|268313540|gb|ACY99914.1| NADH-quinone oxidoreductase, B subunit [Thermomonospora curvata DSM 43183] Length = 323 Score = 200 bits (509), Expect = 7e-50, Method: Composition-based stats. Identities = 76/138 (55%), Positives = 101/138 (73%), Gaps = 1/138 (0%) Query: 41 TSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR-ASPRQSDVMIVA 99 + ++ W R SL FGLACCA+E + ASM R+D R G P PRQ+D+M+V+ Sbjct: 20 KPIKFVLNWGRRYSLWVFNFGLACCAIEFIAASMSRHDFIRLGVIPFAPGPRQADLMVVS 79 Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGC 159 GT+T+KMA A+RR+Y+QMPEP+YVIS G+C+N GG Y SY V +G D+I+PVD+YVPGC Sbjct: 80 GTVTDKMAPAVRRLYEQMPEPKYVISFGACSNCGGPYWDSYCVTKGVDQIIPVDVYVPGC 139 Query: 160 PPTAEALIYGILLLQKKI 177 PP EAL+ GI+ LQ+KI Sbjct: 140 PPRPEALLQGIVRLQEKI 157 >gi|21750696|dbj|BAC03820.1| unnamed protein product [Homo sapiens] Length = 213 Score = 200 bits (509), Expect = 7e-50, Method: Composition-based stats. Identities = 108/166 (65%), Positives = 121/166 (72%), Gaps = 7/166 (4%) Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62 LT + + +L K A + SS ++V +D LV WAR SL MTFGL Sbjct: 37 LTPPVPVCLCASTQPALPKARAVAPKPSS---RGEYVVAKLDDLVNWARRSSLWPMTFGL 93 Query: 63 ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122 ACCAVEMM + PRYD++RFG RASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRY Sbjct: 94 ACCAVEMMHMAAPRYDMDRFGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRY 153 Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPG----CPPTAE 164 V+SMGSCANGGGYYHYSYSVVRGCDRIVPVDIY+PG PPT E Sbjct: 154 VVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYIPGRAGTAPPTRE 199 >gi|90579190|ref|ZP_01235000.1| NADH dehydrogenase beta subunit [Vibrio angustum S14] gi|90440023|gb|EAS65204.1| NADH dehydrogenase beta subunit [Vibrio angustum S14] Length = 183 Score = 200 bits (509), Expect = 7e-50, Method: Composition-based stats. Identities = 77/141 (54%), Positives = 104/141 (73%), Gaps = 2/141 (1%) Query: 39 LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMI 97 +V VD L++++R SL FG +CC VEMM A+ PRYD+ RFG R SPRQSDV+I Sbjct: 25 IVGKVDDLISYSRKHSLWPYNFGTSCCFVEMMTAATPRYDMARFGSEVLRGSPRQSDVLI 84 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 AGT KMA ++ +YDQM EP++VISMGSC+N GG Y YSVV+G D+I+PVD+YVP Sbjct: 85 TAGTCFVKMAPLMKHIYDQMLEPKWVISMGSCSNSGGMY-DIYSVVQGVDKILPVDVYVP 143 Query: 158 GCPPTAEALIYGILLLQKKIR 178 GCPP +AL+ G+++LQ+ ++ Sbjct: 144 GCPPRPDALLEGLIMLQEHVQ 164 >gi|225164240|ref|ZP_03726513.1| NADH dehydrogenase (quinone) [Opitutaceae bacterium TAV2] gi|224801145|gb|EEG19468.1| NADH dehydrogenase (quinone) [Opitutaceae bacterium TAV2] Length = 178 Score = 200 bits (509), Expect = 8e-50, Method: Composition-based stats. Identities = 74/164 (45%), Positives = 110/164 (67%), Gaps = 4/164 (2%) Query: 22 VDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLER 81 + DF+ S ++++ D ++ W R+ S+ M GLACC +E+M R+D+ R Sbjct: 4 ANKDFACDSK--IEGNVVISTADAVINWIRSNSIWPMPMGLACCGIELMGVGGARFDISR 61 Query: 82 FGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSY 140 FG R SPRQ D MIVAGT+T KMAS +RR+YDQM EP++VI+MG+CA+ GG Y SY Sbjct: 62 FGAEVMRFSPRQCDCMIVAGTVTYKMASHVRRIYDQMAEPKWVIAMGACASSGGMYR-SY 120 Query: 141 SVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 + ++G DRI+PVD+Y+ GCPP EA++ ++ +Q+KI+R + Sbjct: 121 ATLQGVDRIIPVDVYISGCPPRPEAVLDALVKMQEKIKRTPATR 164 >gi|89073316|ref|ZP_01159846.1| NADH dehydrogenase beta subunit [Photobacterium sp. SKA34] gi|89051026|gb|EAR56490.1| NADH dehydrogenase beta subunit [Photobacterium sp. SKA34] Length = 183 Score = 200 bits (509), Expect = 8e-50, Method: Composition-based stats. Identities = 77/141 (54%), Positives = 104/141 (73%), Gaps = 2/141 (1%) Query: 39 LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMI 97 +V VD L++++R SL FG +CC VEMM A+ PRYD+ RFG R SPRQSDV+I Sbjct: 25 IVGKVDDLISYSRKHSLWPYNFGTSCCFVEMMTAATPRYDMARFGSEVLRGSPRQSDVLI 84 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 AGT KMA ++ +YDQM EP++VISMGSC+N GG Y YSVV+G D+I+PVD+YVP Sbjct: 85 TAGTCFVKMAPLMKHIYDQMLEPKWVISMGSCSNSGGMY-DIYSVVQGVDKILPVDVYVP 143 Query: 158 GCPPTAEALIYGILLLQKKIR 178 GCPP +AL+ G+++LQ+ ++ Sbjct: 144 GCPPRPDALLEGLIMLQEHVQ 164 >gi|311896699|dbj|BAJ29107.1| putative NADH-quinone oxidoreductase subunit B [Kitasatospora setae KM-6054] Length = 209 Score = 200 bits (509), Expect = 8e-50, Method: Composition-based stats. Identities = 79/137 (57%), Positives = 102/137 (74%), Gaps = 1/137 (0%) Query: 42 SVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR-ASPRQSDVMIVAG 100 V ++ W R SL FGLACCA+E + ASM ++D R G P PRQ+D+MIV+G Sbjct: 44 PVKVVLNWGRRYSLWCFNFGLACCAIEFIAASMAKHDFIRMGVIPFAPGPRQADLMIVSG 103 Query: 101 TLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCP 160 T+T+KMA A++R+Y+QMPEP+YVIS G+CAN GG Y SYSV +G D+I+PVD+YVPGCP Sbjct: 104 TVTDKMAPAVKRLYEQMPEPKYVISFGACANSGGPYWDSYSVTKGVDQIIPVDVYVPGCP 163 Query: 161 PTAEALIYGILLLQKKI 177 P EAL+ GIL LQ+KI Sbjct: 164 PRPEALLQGILKLQEKI 180 >gi|317050795|ref|YP_004111911.1| NADH-quinone oxidoreductase subunit B [Desulfurispirillum indicum S5] gi|316945879|gb|ADU65355.1| NADH-quinone oxidoreductase, B subunit [Desulfurispirillum indicum S5] Length = 208 Score = 200 bits (508), Expect = 9e-50, Method: Composition-based stats. Identities = 64/151 (42%), Positives = 103/151 (68%), Gaps = 1/151 (0%) Query: 35 HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQS 93 +G ++T+++++ W R+ SL +++ ACC +EM+ +S P++D+ RFG RASPRQ+ Sbjct: 24 SQGVIITTLEKVYNWGRSNSLWPLSYATACCGIEMISSSCPQHDIARFGSEVFRASPRQA 83 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD 153 D+MI+AGT+T KM + +++Q+ EP+Y I+MG+C GG + YS SVV +P+D Sbjct: 84 DLMILAGTITKKMMPQVVTLWEQIAEPKYAIAMGNCVITGGIFKYSPSVVANVPDYIPID 143 Query: 154 IYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 +++PGC P EAL GI+ LQ +IRR +K Sbjct: 144 VFIPGCAPRPEALFNGIITLQHQIRRQKMLK 174 >gi|238897506|ref|YP_002923185.1| NADH dehydrogenase I chain B, binds FeS cluster N2 [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229465263|gb|ACQ67037.1| NADH dehydrogenase I chain B, binds FeS cluster N2 [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 226 Score = 200 bits (508), Expect = 9e-50, Method: Composition-based stats. Identities = 73/159 (45%), Positives = 99/159 (62%), Gaps = 2/159 (1%) Query: 24 ADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFG 83 + + G L ++ V W R SL FGL+CC VEM+ + +D+ RFG Sbjct: 29 DPLDEQAHRNIYMGKLEHALHDTVNWGRKNSLWPYNFGLSCCYVEMVTSFTAVHDVARFG 88 Query: 84 FAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142 RASPRQ+D M+VAGT KMA ++R+YDQM EP++VISMG+CAN GG Y YSV Sbjct: 89 AEVLRASPRQADFMVVAGTCFTKMAPVIQRLYDQMLEPKWVISMGACANSGGMY-DIYSV 147 Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181 V+G D+ +PVD+Y+PGCPP EA + + LLQ+ I + Sbjct: 148 VQGVDKFLPVDVYIPGCPPRPEAYMQALFLLQESIGKER 186 >gi|330470216|ref|YP_004407959.1| NADH-quinone oxidoreductase subunit B [Verrucosispora maris AB-18-032] gi|328813187|gb|AEB47359.1| NADH-quinone oxidoreductase, B subunit [Verrucosispora maris AB-18-032] Length = 197 Score = 200 bits (508), Expect = 9e-50, Method: Composition-based stats. Identities = 77/133 (57%), Positives = 102/133 (76%), Gaps = 1/133 (0%) Query: 46 LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS-PRQSDVMIVAGTLTN 104 ++ W R SL FGLACCA+E + SM R+D R G P A PRQ+D+M+V+GT+T+ Sbjct: 14 VLNWGRRYSLWVFNFGLACCAIEFIATSMSRHDFMRLGVIPFAHGPRQADLMVVSGTVTD 73 Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164 KMA A++R+YDQMPEP+YVIS G+C+N GG Y SYSV +G D+++PVD+YVPGCPP E Sbjct: 74 KMAPAIKRLYDQMPEPKYVISFGACSNCGGPYWDSYSVTKGVDQLIPVDVYVPGCPPRPE 133 Query: 165 ALIYGILLLQKKI 177 AL++GIL LQ+KI Sbjct: 134 ALLHGILRLQEKI 146 >gi|291618188|ref|YP_003520930.1| NuoB [Pantoea ananatis LMG 20103] gi|291153218|gb|ADD77802.1| NuoB [Pantoea ananatis LMG 20103] gi|327394581|dbj|BAK12003.1| NADH-quinone oxidoreductase chain B NuoB [Pantoea ananatis AJ13355] Length = 225 Score = 200 bits (508), Expect = 9e-50, Method: Composition-based stats. Identities = 75/172 (43%), Positives = 104/172 (60%), Gaps = 5/172 (2%) Query: 14 QSSCSLEKVDADFSRISSEITHK---GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMM 70 L+K + + + G L ++ +V W R SL FGL+CC VEM Sbjct: 15 NDRYPLQKQEIVSDPLEQHVHRSVYMGKLEHALHDMVNWGRKNSLWPYNFGLSCCYVEMT 74 Query: 71 QASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSC 129 + +D+ RFG RASPRQ+D M++AGT KMA ++R+YDQM EP++VISMG+C Sbjct: 75 TSFTAVHDVARFGAEVMRASPRQADFMVIAGTPFTKMAPVIQRLYDQMLEPKWVISMGAC 134 Query: 130 ANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181 AN GG Y YSVV+G D+ +PVD+Y+PGCPP EA + +LLLQ+ I + Sbjct: 135 ANSGGMY-DIYSVVQGVDKFLPVDVYIPGCPPRPEAYMQALLLLQESIGKER 185 >gi|149374626|ref|ZP_01892400.1| NADH dehydrogenase subunit B [Marinobacter algicola DG893] gi|149361329|gb|EDM49779.1| NADH dehydrogenase subunit B [Marinobacter algicola DG893] Length = 225 Score = 200 bits (508), Expect = 1e-49, Method: Composition-based stats. Identities = 78/183 (42%), Positives = 107/183 (58%), Gaps = 6/183 (3%) Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEITHK---GFLVTSVDQLVTWARTGSLMWMT 59 LT + G + + + + + ++ G L ++ V W R SL Sbjct: 5 LTRAEPSPV-GDTQYPIRQQEPSEDPVKRQLERNVFTGKLSDVLNSAVNWGRKNSLWPYN 63 Query: 60 FGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMP 118 FGL+CC VEM A +D+ RFG RASPRQ+D M++AGT KMA ++++YDQM Sbjct: 64 FGLSCCYVEMTTAFTAPHDIARFGSEVIRASPRQADFMVIAGTCFIKMAPVIQQLYDQML 123 Query: 119 EPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 EP++VISMGSCAN GG Y YSVV+G D+ +PVD+YVPGCPP EA + G+ LLQ I+ Sbjct: 124 EPKWVISMGSCANSGGMY-DIYSVVQGVDKFLPVDVYVPGCPPRPEAFLQGLQLLQDSIQ 182 Query: 179 RVG 181 Sbjct: 183 EER 185 >gi|257051791|ref|YP_003129624.1| NADH-quinone oxidoreductase, B subunit [Halorhabdus utahensis DSM 12940] gi|256690554|gb|ACV10891.1| NADH-quinone oxidoreductase, B subunit [Halorhabdus utahensis DSM 12940] Length = 231 Score = 200 bits (508), Expect = 1e-49, Method: Composition-based stats. Identities = 79/168 (47%), Positives = 113/168 (67%), Gaps = 2/168 (1%) Query: 12 SGQSSCSLEKVDADF-SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMM 70 S + + E VD F SR+ + F++T DQ + WAR S+ + FG+ACC++EMM Sbjct: 15 STREARMGEGVDDRFNSRLREALGSTPFILTKFDQFMNWARGSSMFMLQFGIACCSIEMM 74 Query: 71 QASMPRYDLERFGF-APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSC 129 ++DL+RF PRASPRQ+DVMIV GT+ +K A ++RVYDQ+PEP++ I MGSC Sbjct: 75 HTYSVKHDLDRFHAGVPRASPRQADVMIVPGTIVSKFAPRMKRVYDQVPEPKFTIGMGSC 134 Query: 130 ANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 GG + Y+VV+G + ++P+DI +PGCPP EALIYG+ LQ++I Sbjct: 135 TISGGPFQEGYNVVKGAEEVIPIDIQIPGCPPRPEALIYGVAKLQERI 182 >gi|73544267|ref|XP_848028.1| NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial precursor [Leishmania major strain Friedlin] gi|146094718|ref|XP_001467361.1| NADH-ubiquinone oxidoreductase [Leishmania infantum JPCM5] gi|321398434|emb|CBZ08822.1| NADH-ubiquinone oxidoreductase 20 kDa subunit,mitochondrial precursor [Leishmania infantum JPCM5] gi|321438382|emb|CBZ12134.1| NADH-ubiquinone oxidoreductase 20 kDa subunit,mitochondrial precursor [Leishmania major strain Friedlin] gi|322492890|emb|CBZ28169.1| NADH-ubiquinone oxidoreductase 20 kDa subunit,mitochondrial precursor [Leishmania mexicana MHOM/GT/2001/U1103] gi|322500143|emb|CBZ35218.1| unnamed protein product [Leishmania donovani BPK282A1] Length = 201 Score = 199 bits (507), Expect = 1e-49, Method: Composition-based stats. Identities = 82/137 (59%), Positives = 108/137 (78%) Query: 42 SVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGT 101 ++ L W S +TFGLACCAVEMM + RYDL+RFG PR SPRQ++++IV+GT Sbjct: 55 TLHDLTEWVVAYSPWPLTFGLACCAVEMMHSYSSRYDLDRFGIVPRPSPRQAEIIIVSGT 114 Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP 161 +TNKMA LR +Y QM P++VISMGSCANGGGYYH+SY+V+RGC+R +PVD ++PGCPP Sbjct: 115 VTNKMAPLLRNIYVQMVNPKWVISMGSCANGGGYYHFSYAVLRGCERAIPVDFWIPGCPP 174 Query: 162 TAEALIYGILLLQKKIR 178 +AE+L++ + LQKKIR Sbjct: 175 SAESLVFCLHNLQKKIR 191 >gi|294637178|ref|ZP_06715486.1| NADH dehydrogenase I subunit B [Edwardsiella tarda ATCC 23685] gi|291089642|gb|EFE22203.1| NADH dehydrogenase I subunit B [Edwardsiella tarda ATCC 23685] Length = 224 Score = 199 bits (507), Expect = 1e-49, Method: Composition-based stats. Identities = 74/173 (42%), Positives = 105/173 (60%), Gaps = 5/173 (2%) Query: 13 GQSSCSLEKVDADFSRISSEITHK---GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEM 69 L+K + + + G L ++ +V W R SL FGL+CC VEM Sbjct: 13 DNDRYPLQKQEVVGDPLEQHVHRSVYMGKLDHALHDMVNWGRKNSLWPYNFGLSCCYVEM 72 Query: 70 MQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGS 128 + + +D+ RFG RASPRQ+D M+VAGT KMA ++R+Y+QM EP++VISMG+ Sbjct: 73 VTSFTAVHDVARFGAEVLRASPRQADFMVVAGTCFTKMAPVIQRLYEQMLEPKWVISMGA 132 Query: 129 CANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181 CAN GG Y YSVV+G D+ +PVD+Y+PGCPP EA + ++LLQ+ I + Sbjct: 133 CANSGGMY-DIYSVVQGVDKFIPVDVYIPGCPPRPEAYMQALMLLQESIGQER 184 >gi|320354161|ref|YP_004195500.1| NADH dehydrogenase subunit B [Desulfobulbus propionicus DSM 2032] gi|320122663|gb|ADW18209.1| NADH dehydrogenase subunit B [Desulfobulbus propionicus DSM 2032] Length = 170 Score = 199 bits (507), Expect = 1e-49, Method: Composition-based stats. Identities = 64/149 (42%), Positives = 98/149 (65%), Gaps = 2/149 (1%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RAS 89 L T +D ++ W R SL FG ACCA+E M A+ + D+ R+G R S Sbjct: 6 EASLGDSVLTTKLDAVINWGREYSLWPFVFGTACCAIEFMSAAASQLDISRWGAEVVRFS 65 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQ+D+++V GT++ K A L+R+Y+QMPEP++V++MG+CA+ GG Y +Y V+G D I Sbjct: 66 PRQADLLLVCGTISYKQAPILKRIYEQMPEPKWVVAMGACASSGGVY-DNYCTVQGIDTI 124 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIR 178 +PVD+Y+ GCPP EA++ ++ +Q KI+ Sbjct: 125 IPVDVYISGCPPRPEAVLDALMKIQDKIK 153 >gi|225850946|ref|YP_002731180.1| NADH dehydrogenase subunit B [Persephonella marina EX-H1] gi|225646636|gb|ACO04822.1| NADH-quinone oxidoreductase chain b (nadh dehydrogenasei, chain b) (ndh-1, chain b) [Persephonella marina EX-H1] Length = 181 Score = 199 bits (507), Expect = 1e-49, Method: Composition-based stats. Identities = 73/140 (52%), Positives = 108/140 (77%), Gaps = 1/140 (0%) Query: 35 HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSD 94 + G ++T+V+++++W R SL + GLACCA+EMM + R+D +R G R SPRQSD Sbjct: 6 NNGIILTTVEEVLSWGRRNSLWPASVGLACCAIEMMHTAASRFDTDRLGIIFRGSPRQSD 65 Query: 95 VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154 V+IVAGT+ NK+A L+ +YDQMP+P++VI+MG C++ GG + +Y+ ++G DRI+PVD+ Sbjct: 66 VLIVAGTVVNKVAPMLKLIYDQMPDPKWVIAMGGCSSAGGPFP-TYATLQGVDRIIPVDV 124 Query: 155 YVPGCPPTAEALIYGILLLQ 174 YVPGCPPT +AL++GIL LQ Sbjct: 125 YVPGCPPTPQALLWGILELQ 144 >gi|322831985|ref|YP_004212012.1| NADH-quinone oxidoreductase, B subunit [Rahnella sp. Y9602] gi|321167186|gb|ADW72885.1| NADH-quinone oxidoreductase, B subunit [Rahnella sp. Y9602] Length = 224 Score = 199 bits (507), Expect = 1e-49, Method: Composition-based stats. Identities = 78/166 (46%), Positives = 102/166 (61%), Gaps = 2/166 (1%) Query: 17 CSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPR 76 S E V G L S+ +V W R SL FGL+CC VEM+ + Sbjct: 20 QSQEVVGDPLQEQVKRSVFMGNLQESLHGMVNWGRKNSLWPYNFGLSCCYVEMVTSFTAV 79 Query: 77 YDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY 135 +D+ RFG RASPRQ+D M+VAGT KMA ++R+YDQM EP++VISMG+CAN GG Sbjct: 80 HDVARFGAEVLRASPRQADFMVVAGTCFTKMAPVIQRLYDQMLEPKWVISMGACANSGGM 139 Query: 136 YHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181 Y YSVV+G D+ +PVD+Y+PGCPP EA + +LLLQ+ I + Sbjct: 140 Y-DIYSVVQGVDKFLPVDVYIPGCPPRPEAYMQALLLLQESIGKER 184 >gi|284009321|emb|CBA76481.1| NADH-quinone oxidoreductase chain B [Arsenophonus nasoniae] Length = 229 Score = 199 bits (507), Expect = 1e-49, Method: Composition-based stats. Identities = 74/166 (44%), Positives = 103/166 (62%), Gaps = 2/166 (1%) Query: 17 CSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPR 76 + + V + + G L ++ +V W R SL FGL+CC VEM+ + Sbjct: 25 QTQQVVGDPLEQHVHRSVYMGKLEHALHNMVNWGRKNSLWPYNFGLSCCYVEMVTSFTAV 84 Query: 77 YDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY 135 +D+ RFG RASPRQ+D M+VAGT KMA ++R+YDQM P++VISMG+CAN GG Sbjct: 85 HDVARFGAEVLRASPRQADFMVVAGTCFTKMAPVIQRLYDQMLAPKWVISMGACANSGGM 144 Query: 136 YHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181 Y YSVV+G D+ +PVD+Y+PGCPP EA + +LLLQ+ I + Sbjct: 145 Y-DIYSVVQGVDKFLPVDVYIPGCPPRPEAYMQALLLLQESIGKER 189 >gi|309812337|ref|ZP_07706092.1| NADH-quinone oxidoreductase, B subunit [Dermacoccus sp. Ellin185] gi|308433642|gb|EFP57519.1| NADH-quinone oxidoreductase, B subunit [Dermacoccus sp. Ellin185] Length = 249 Score = 199 bits (507), Expect = 1e-49, Method: Composition-based stats. Identities = 76/137 (55%), Positives = 100/137 (72%), Gaps = 1/137 (0%) Query: 46 LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR-ASPRQSDVMIVAGTLTN 104 ++ W R SL FGLACCA+E + SM R+D R G P PRQ+D+M+V+GT+T+ Sbjct: 53 VLNWGRRYSLWVFNFGLACCAIEFIAGSMSRHDFIRLGVIPFAPGPRQADLMVVSGTVTD 112 Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164 KMA A+RR+YDQMPEP+YVIS G+C+N GG Y SYSV +G D++VPVD+YVPGCPP E Sbjct: 113 KMAPAVRRLYDQMPEPKYVISFGACSNSGGPYWDSYSVTKGVDQLVPVDVYVPGCPPRPE 172 Query: 165 ALIYGILLLQKKIRRVG 181 AL+ GI+ LQ +I + Sbjct: 173 ALLQGIVTLQNQIAQEK 189 >gi|146304760|ref|YP_001192076.1| NADH-quinone oxidoreductase subunit B [Metallosphaera sedula DSM 5348] gi|145703010|gb|ABP96152.1| NADH dehydrogenase subunit B [Metallosphaera sedula DSM 5348] Length = 170 Score = 199 bits (507), Expect = 1e-49, Method: Composition-based stats. Identities = 68/144 (47%), Positives = 89/144 (61%) Query: 41 TSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAG 100 V L W SL F +CC E + R+D ERFG P AS RQS+++ + G Sbjct: 26 KPVKTLRDWGIAFSLWPPHFTTSCCGTEFGAFAAARFDAERFGMLPFASSRQSNILTIEG 85 Query: 101 TLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCP 160 TLT KMA A R VYDQMPEP+YVI++G+C GG + SY+ V D +PVD+Y+PGCP Sbjct: 86 TLTRKMARAARIVYDQMPEPKYVIALGACILEGGIFWNSYNTVLPSDVGIPVDLYLPGCP 145 Query: 161 PTAEALIYGILLLQKKIRRVGNVK 184 EA+ G+L+LQKKIR G ++ Sbjct: 146 TRPEAIARGLLMLQKKIRTQGAIR 169 >gi|188996814|ref|YP_001931065.1| NADH-quinone oxidoreductase, B subunit [Sulfurihydrogenibium sp. YO3AOP1] gi|238065219|sp|B2V988|NUOB_SULSY RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|188931881|gb|ACD66511.1| NADH-quinone oxidoreductase, B subunit [Sulfurihydrogenibium sp. YO3AOP1] Length = 171 Score = 199 bits (507), Expect = 1e-49, Method: Composition-based stats. Identities = 75/142 (52%), Positives = 109/142 (76%), Gaps = 1/142 (0%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 +T G ++T+V+++++W R SL ++ GLACCA+EMM + R+D +R G R SPRQ Sbjct: 3 MTSSGIILTTVEEVLSWGRRNSLWPVSVGLACCAIEMMHTAASRFDTDRLGIIFRGSPRQ 62 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 SDV+IVAGT+ NK+A LR +Y+QMP+P++VISMG CA+ GG + +Y ++G DRI+PV Sbjct: 63 SDVLIVAGTVVNKVAPMLRLIYEQMPDPKWVISMGGCASAGGPFP-TYPTLQGVDRIIPV 121 Query: 153 DIYVPGCPPTAEALIYGILLLQ 174 D+Y+PGCPPT +AL++GIL LQ Sbjct: 122 DVYIPGCPPTPQALLWGILELQ 143 >gi|71754617|ref|XP_828223.1| NADH-ubiquinone oxidoreductase 20 kDa subunit mitochondrial precursor [Trypanosoma brucei TREU927] gi|6647671|sp|Q26783|NDUS7_TRYBB RecName: Full=NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial; AltName: Full=Complex I-20kD; Short=CI-20kD; AltName: Full=NADH-ubiquinone oxidoreductase 20 kDa subunit; Flags: Precursor gi|162168|gb|AAA30217.1| NADH dehydrogenase (ubiquinone) [Trypanosoma brucei] gi|70833609|gb|EAN79111.1| NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial precursor [Trypanosoma brucei] gi|261334029|emb|CBH17023.1| NADH-ubiquinone oxidoreductase 20 kDa subunit (mitochondrial precursor), putative [Trypanosoma brucei gambiense DAL972] Length = 202 Score = 199 bits (507), Expect = 1e-49, Method: Composition-based stats. Identities = 82/137 (59%), Positives = 108/137 (78%) Query: 42 SVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGT 101 ++ L W S +TFGLACCAVEMM A RYDL+RFG PR +PRQ++++IV+GT Sbjct: 55 TLHDLTEWCLAYSPWPLTFGLACCAVEMMHAYASRYDLDRFGIVPRPTPRQAEIIIVSGT 114 Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP 161 +TNKMA LR +Y QM P++VISMGSCANGGGYYH+SY+V+RGC+R +PVD ++PGCPP Sbjct: 115 VTNKMAPILRNIYVQMVNPKWVISMGSCANGGGYYHFSYAVLRGCERAIPVDFWIPGCPP 174 Query: 162 TAEALIYGILLLQKKIR 178 +AE+L++ + LQKKIR Sbjct: 175 SAESLVFCLHTLQKKIR 191 >gi|329296020|ref|ZP_08253356.1| NADH dehydrogenase subunit B [Plautia stali symbiont] Length = 225 Score = 199 bits (507), Expect = 1e-49, Method: Composition-based stats. Identities = 75/173 (43%), Positives = 104/173 (60%), Gaps = 5/173 (2%) Query: 13 GQSSCSLEKVDADFSRISSEITHK---GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEM 69 L+K + + + G L ++ +V W R SL FGL+CC VEM Sbjct: 14 DNDRYPLQKQEIVTDPLEQHVHRSVYMGKLEHALHDMVNWGRKNSLWPYNFGLSCCYVEM 73 Query: 70 MQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGS 128 + +D+ RFG RASPRQ+D M++AGT KMA ++R+YDQM EP++VISMG+ Sbjct: 74 TTSFTAVHDVARFGAEVMRASPRQADFMVIAGTPFTKMAPVIQRLYDQMLEPKWVISMGA 133 Query: 129 CANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181 CAN GG Y YSVV+G D+ +PVD+Y+PGCPP EA + +LLL+K I + Sbjct: 134 CANSGGMY-DIYSVVQGVDKFLPVDVYIPGCPPRPEAYMQALLLLRKSIGKER 185 >gi|154339768|ref|XP_001565841.1| NADH-ubiquinone oxidoreductase 20 kDa subunit,mitochondrial precursor [Leishmania braziliensis MHOM/BR/75/M2904] gi|134063159|emb|CAM45359.1| NADH-ubiquinone oxidoreductase 20 kDa subunit,mitochondrial precursor [Leishmania braziliensis MHOM/BR/75/M2904] Length = 201 Score = 199 bits (506), Expect = 1e-49, Method: Composition-based stats. Identities = 82/137 (59%), Positives = 108/137 (78%) Query: 42 SVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGT 101 ++ L W S +TFGLACCAVEMM + RYDL+RFG PR SPRQ++++IV+GT Sbjct: 55 TLHDLTEWVLAYSPWPLTFGLACCAVEMMHSYSSRYDLDRFGIVPRPSPRQAEIIIVSGT 114 Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP 161 +TNKMA LR +Y QM P++VISMGSCANGGGYYH+SY+V+RGC+R +PVD ++PGCPP Sbjct: 115 VTNKMAPLLRNIYVQMVNPKWVISMGSCANGGGYYHFSYAVLRGCERSIPVDFWIPGCPP 174 Query: 162 TAEALIYGILLLQKKIR 178 +AE+L++ + LQKKIR Sbjct: 175 SAESLVFCLHNLQKKIR 191 >gi|308187603|ref|YP_003931734.1| NADH dehydrogenase I chain B [Pantoea vagans C9-1] gi|308058113|gb|ADO10285.1| NADH dehydrogenase I chain B [Pantoea vagans C9-1] Length = 225 Score = 199 bits (506), Expect = 1e-49, Method: Composition-based stats. Identities = 75/172 (43%), Positives = 104/172 (60%), Gaps = 5/172 (2%) Query: 14 QSSCSLEKVDADFSRISSEITHK---GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMM 70 L+K + + + G L ++ +V W R SL FGL+CC VEM Sbjct: 15 NDRYPLQKQEIVSDPLEQHVHRSVYMGKLENALHDMVNWGRKNSLWPYNFGLSCCYVEMT 74 Query: 71 QASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSC 129 + +D+ RFG RASPRQ+D M++AGT KMA ++R+YDQM EP++VISMG+C Sbjct: 75 TSFTAVHDVARFGAEVMRASPRQADFMVIAGTPFTKMAPVIQRLYDQMLEPKWVISMGAC 134 Query: 130 ANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181 AN GG Y YSVV+G D+ +PVD+Y+PGCPP EA + +LLLQ+ I + Sbjct: 135 ANSGGMY-DIYSVVQGVDKFLPVDVYIPGCPPRPEAYMQALLLLQESIGKER 185 >gi|85059578|ref|YP_455280.1| NADH dehydrogenase subunit B [Sodalis glossinidius str. 'morsitans'] gi|123519200|sp|Q2NSK0|NUOB_SODGM RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|84780098|dbj|BAE74875.1| NADH dehydrogenase I subunit B [Sodalis glossinidius str. 'morsitans'] Length = 224 Score = 199 bits (506), Expect = 1e-49, Method: Composition-based stats. Identities = 78/185 (42%), Positives = 106/185 (57%), Gaps = 5/185 (2%) Query: 1 MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHK---GFLVTSVDQLVTWARTGSLMW 57 M T + L+K + + + G L ++ V W R SL Sbjct: 1 MDYTLTRAEPDGDNERYPLQKQEIVADPLEQHVHRSVYLGKLERALHNAVNWGRGNSLWP 60 Query: 58 MTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQ 116 FGL+CC VEM + +D+ RFG RASPRQ+D M+VAGT KMA ++R+YDQ Sbjct: 61 YNFGLSCCYVEMTTSFTAVHDVARFGSEVIRASPRQADFMVVAGTPFTKMAPVIQRLYDQ 120 Query: 117 MPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKK 176 M EP++VISMG+CAN GG Y YSVV+G D+ +PVD+Y+PGCPP EA I +LLL++ Sbjct: 121 MLEPKWVISMGACANSGGMY-DIYSVVQGVDKFLPVDVYIPGCPPRPEAYIQALLLLKES 179 Query: 177 IRRVG 181 I + Sbjct: 180 IGKER 184 >gi|261416512|ref|YP_003250195.1| NADH-quinone oxidoreductase, B subunit [Fibrobacter succinogenes subsp. succinogenes S85] gi|261372968|gb|ACX75713.1| NADH-quinone oxidoreductase, B subunit [Fibrobacter succinogenes subsp. succinogenes S85] gi|302327904|gb|ADL27105.1| NADH-quinone oxidoreductase, B subunit [Fibrobacter succinogenes subsp. succinogenes S85] Length = 211 Score = 199 bits (506), Expect = 2e-49, Method: Composition-based stats. Identities = 72/157 (45%), Positives = 101/157 (64%), Gaps = 2/157 (1%) Query: 29 ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-R 87 + +E + +S+D LV W R+ SL +G ACCA+E M + RYDL R G R Sbjct: 1 MGNEAEKPNIITSSLDFLVNWGRSNSLWPFPYGTACCAIEFMSTEVGRYDLSRIGSEYVR 60 Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCD 147 +PRQSDV++VAGT+T K A L+R+Y+QM EPR+VI+MG+CA+ GG ++ Y V G D Sbjct: 61 FTPRQSDVLLVAGTITYKQAPILKRIYEQMAEPRWVIAMGACASSGG-FYDCYCTVPGID 119 Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 I+PVD+Y+ GCPP EA + LQKK++ +K Sbjct: 120 HIIPVDVYIGGCPPRPEAFFDAMFDLQKKVKDESFMK 156 >gi|242239967|ref|YP_002988148.1| NADH dehydrogenase subunit B [Dickeya dadantii Ech703] gi|242132024|gb|ACS86326.1| NADH-quinone oxidoreductase, B subunit [Dickeya dadantii Ech703] Length = 224 Score = 199 bits (506), Expect = 2e-49, Method: Composition-based stats. Identities = 76/163 (46%), Positives = 103/163 (63%), Gaps = 2/163 (1%) Query: 20 EKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDL 79 E V+ + G L ++ +V W R+ SL FGL+CC VEM + +D+ Sbjct: 23 EVVNDPLEQHVHRSVFMGNLEHALHNMVNWGRSNSLWPYNFGLSCCYVEMATSFTAVHDV 82 Query: 80 ERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY 138 RFG RASPRQ+D M+VAGT KMA ++R+YDQM EP++VISMG+CAN GG Y Sbjct: 83 ARFGSEVIRASPRQADFMVVAGTPFLKMAPVIQRLYDQMLEPKWVISMGACANSGGMY-D 141 Query: 139 SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181 YSVV+G D+ +PVD+Y+PGCPP EA + +LLL++ IR Sbjct: 142 IYSVVQGVDKFLPVDVYIPGCPPRPEAYMQALLLLKESIREER 184 >gi|304398215|ref|ZP_07380089.1| NADH-quinone oxidoreductase, B subunit [Pantoea sp. aB] gi|304354081|gb|EFM18454.1| NADH-quinone oxidoreductase, B subunit [Pantoea sp. aB] Length = 225 Score = 199 bits (506), Expect = 2e-49, Method: Composition-based stats. Identities = 75/172 (43%), Positives = 104/172 (60%), Gaps = 5/172 (2%) Query: 14 QSSCSLEKVDADFSRISSEITHK---GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMM 70 L+K + + + G L ++ +V W R SL FGL+CC VEM Sbjct: 15 NDRYPLQKQEIVSDPLEQHVHRSVYMGKLENALHDMVNWGRKNSLWPYNFGLSCCYVEMT 74 Query: 71 QASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSC 129 + +D+ RFG RASPRQ+D M++AGT KMA ++R+YDQM EP++VISMG+C Sbjct: 75 TSFTAVHDVARFGAEVMRASPRQADFMVIAGTPFTKMAPVIQRLYDQMLEPKWVISMGAC 134 Query: 130 ANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181 AN GG Y YSVV+G D+ +PVD+Y+PGCPP EA + +LLLQ+ I + Sbjct: 135 ANSGGMY-DIYSVVQGVDKFLPVDVYIPGCPPRPEAYMQALLLLQESIGKER 185 >gi|290475916|ref|YP_003468811.1| NADH dehydrogenase I subunit B [Xenorhabdus bovienii SS-2004] gi|289175244|emb|CBJ82047.1| NADH dehydrogenase I chain B [Xenorhabdus bovienii SS-2004] Length = 224 Score = 199 bits (506), Expect = 2e-49, Method: Composition-based stats. Identities = 73/163 (44%), Positives = 104/163 (63%), Gaps = 2/163 (1%) Query: 20 EKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDL 79 E V+ + + G L ++ +V W R SL FGL+CC VEM+ + +D+ Sbjct: 23 ELVNDPLEQHVHRSVYMGKLEHALHDMVNWGRKNSLWPYNFGLSCCYVEMVTSFTAVHDV 82 Query: 80 ERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY 138 RFG RASPRQ+D M+++GT KMA ++R+YDQ+ EP++VISMG+CAN GG Y Sbjct: 83 ARFGAEVLRASPRQADFMVISGTCFVKMAPVIQRLYDQLLEPKWVISMGACANSGGMY-D 141 Query: 139 SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181 YSVV+G D+ +PVD+Y+PGCPP EA + +LLLQ+ I + Sbjct: 142 IYSVVQGVDKFIPVDVYIPGCPPRPEAYMQALLLLQESIGKER 184 >gi|168700846|ref|ZP_02733123.1| NADH-quinone oxidoreductase, B subunit [Gemmata obscuriglobus UQM 2246] Length = 201 Score = 199 bits (506), Expect = 2e-49, Method: Composition-based stats. Identities = 73/147 (49%), Positives = 100/147 (68%), Gaps = 2/147 (1%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQSDVM 96 F++ +D L AR SL M F ACC +E+M + RYD+ RFG R SPRQ DVM Sbjct: 10 FMIAPLDYLANMARKHSLWPMPFATACCGIELMATASSRYDIARFGSEAMRFSPRQCDVM 69 Query: 97 IVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV 156 IVAG + KM ++R++ QMPEP++ ISMG+CA+ GG + +Y+VV+G DR +PVD+YV Sbjct: 70 IVAGRVAMKMVPVMQRIWLQMPEPKWCISMGACASSGGVF-DTYAVVQGIDRFIPVDVYV 128 Query: 157 PGCPPTAEALIYGILLLQKKIRRVGNV 183 PGCPP E LI +L LQ+KI++ G + Sbjct: 129 PGCPPRPEQLIRAVLDLQEKIQKTGTI 155 >gi|55376749|ref|YP_134600.1| NADH dehydrogenase/oxidoreductase [Haloarcula marismortui ATCC 43049] gi|55229474|gb|AAV44894.1| NADH dehydrogenase/oxidoreductase [Haloarcula marismortui ATCC 43049] Length = 228 Score = 199 bits (506), Expect = 2e-49, Method: Composition-based stats. Identities = 76/168 (45%), Positives = 111/168 (66%), Gaps = 2/168 (1%) Query: 12 SGQSSCSLEKVDADFSRISSEITHKG-FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMM 70 S C + + F+ E+ F++T D + W R S+ + FG+ACC +EMM Sbjct: 13 SDDRICPGRRANDRFNSTLREVLGSSPFILTKFDTFLNWVRGSSMFVLQFGIACCTIEMM 72 Query: 71 QASMPRYDLERFGF-APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSC 129 ++DL+RF PRASPRQ+D++IV GT+ +K A ++RVYDQMPEP++V+SMGSC Sbjct: 73 GTLATKHDLDRFAAGVPRASPRQADLIIVPGTIVSKFAPRMKRVYDQMPEPKFVVSMGSC 132 Query: 130 ANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 GG + Y+V++G ++++PVDI+VPGCPP EALIYGI LQ++I Sbjct: 133 TISGGPFQEGYNVIKGAEQVIPVDIHVPGCPPRPEALIYGIAKLQERI 180 >gi|256831780|ref|YP_003160507.1| NADH-quinone oxidoreductase, B subunit [Jonesia denitrificans DSM 20603] gi|256685311|gb|ACV08204.1| NADH-quinone oxidoreductase, B subunit [Jonesia denitrificans DSM 20603] Length = 183 Score = 198 bits (505), Expect = 2e-49, Method: Composition-based stats. Identities = 75/153 (49%), Positives = 108/153 (70%), Gaps = 2/153 (1%) Query: 29 ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PR 87 ++ + + GF S++ + R GS+ +TFGLACCA+EMM + R+D+ RFG R Sbjct: 1 MAHDDSTPGFFTASLEDVAGLFRKGSMWPVTFGLACCAIEMMATASSRFDVARFGMEVFR 60 Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCD 147 ASPRQ+D+MIVAG ++ KMA +R+VYDQM EP++V+SMG CA+ GG ++ Y++V+G D Sbjct: 61 ASPRQADLMIVAGRVSQKMAPVVRQVYDQMAEPKWVLSMGVCASSGGMFNN-YAIVQGVD 119 Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 IVPVDIY+PGCPP E LI +L L K+++ Sbjct: 120 HIVPVDIYLPGCPPRPEMLINAMLELHKQVQEQ 152 >gi|168705443|ref|ZP_02737720.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit [Gemmata obscuriglobus UQM 2246] Length = 203 Score = 198 bits (505), Expect = 2e-49, Method: Composition-based stats. Identities = 84/152 (55%), Positives = 114/152 (75%), Gaps = 2/152 (1%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APRASPRQ 92 GF+ T+++ + WAR SL MTFGLACCA+EMM PRYD++RFG A RA+PRQ Sbjct: 8 MRDGFVATNLEHAINWARESSLWPMTFGLACCAIEMMATGAPRYDIDRFGAGAFRATPRQ 67 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCAN-GGGYYHYSYSVVRGCDRIVP 151 +D+MIVAGT+ KMA +RR+Y+QMP+P++VI+MG+C GG YY Y Y+V +G D IVP Sbjct: 68 ADLMIVAGTVNLKMAERVRRLYNQMPDPKFVIAMGACTCGGGPYYKYGYNVAKGVDLIVP 127 Query: 152 VDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 VD+YVPGCPP EAL+ G++ +Q KIR++ + Sbjct: 128 VDVYVPGCPPRPEALLEGLMRVQDKIRKMREL 159 >gi|261820793|ref|YP_003258899.1| NADH dehydrogenase subunit B [Pectobacterium wasabiae WPP163] gi|261604806|gb|ACX87292.1| NADH-quinone oxidoreductase, B subunit [Pectobacterium wasabiae WPP163] Length = 224 Score = 198 bits (505), Expect = 2e-49, Method: Composition-based stats. Identities = 74/166 (44%), Positives = 102/166 (61%), Gaps = 2/166 (1%) Query: 17 CSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPR 76 E V + + G L ++ V W R SL FGL+CC VEM+ + Sbjct: 20 QRQETVSDPLEQHVHRSVYMGKLEHALHDTVNWGRQNSLWPYNFGLSCCYVEMVTSFTAV 79 Query: 77 YDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY 135 +D+ RFG RASPRQ+D M+VAGT KMA ++R+Y+QM EP++VISMG+CAN GG Sbjct: 80 HDVARFGAEVLRASPRQADFMVVAGTCFTKMAPVIQRLYEQMLEPKWVISMGACANSGGM 139 Query: 136 YHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181 Y YSVV+G D+ +PVD+Y+PGCPP EA + +LLL++ I + Sbjct: 140 Y-DIYSVVQGVDKFLPVDVYIPGCPPRPEAYMQALLLLKESIGKER 184 >gi|302870016|ref|YP_003838653.1| NADH-quinone oxidoreductase subunit B [Micromonospora aurantiaca ATCC 27029] gi|315503712|ref|YP_004082599.1| NADH-quinone oxidoreductase, b subunit [Micromonospora sp. L5] gi|302572875|gb|ADL49077.1| NADH-quinone oxidoreductase, B subunit [Micromonospora aurantiaca ATCC 27029] gi|315410331|gb|ADU08448.1| NADH-quinone oxidoreductase, B subunit [Micromonospora sp. L5] Length = 186 Score = 198 bits (505), Expect = 2e-49, Method: Composition-based stats. Identities = 77/133 (57%), Positives = 102/133 (76%), Gaps = 1/133 (0%) Query: 46 LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS-PRQSDVMIVAGTLTN 104 ++ W R SL FGLACCA+E + SM R+D R G P A PRQ+D+M+V+GT+T+ Sbjct: 14 VLNWGRRYSLWVFNFGLACCAIEFIATSMGRHDFMRLGVIPFAHGPRQADLMVVSGTVTD 73 Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164 KMA A++R+YDQMPEP+YVIS G+C+N GG Y SYSV +G D+++PVD+YVPGCPP E Sbjct: 74 KMAPAVKRLYDQMPEPKYVISFGACSNCGGPYWDSYSVTKGVDQLIPVDVYVPGCPPRPE 133 Query: 165 ALIYGILLLQKKI 177 AL++GIL LQ+KI Sbjct: 134 ALLHGILRLQEKI 146 >gi|52550302|gb|AAU84151.1| F420H2 dehydrogenase subunit B [uncultured archaeon GZfos37B2] Length = 175 Score = 198 bits (505), Expect = 2e-49, Method: Composition-based stats. Identities = 64/138 (46%), Positives = 92/138 (66%) Query: 41 TSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAG 100 + ++ W R SL +MT + CC VEM+ A YD +RFG PR SPR +DVM+++G Sbjct: 26 SPAQDVINWGRKNSLWFMTQPMGCCGVEMIAAGCSHYDTDRFGIIPRCSPRHADVMVISG 85 Query: 101 TLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCP 160 + K AL+R+Y+QMP P++VI MG+C+ GG ++ SY+ ++ D I PVD+Y+ GCP Sbjct: 86 YIVRKYFPALKRLYEQMPSPKWVICMGNCSISGGPFYRSYNTLQNIDEIFPVDVYITGCP 145 Query: 161 PTAEALIYGILLLQKKIR 178 P EALI G + LQKKI+ Sbjct: 146 PRPEALIQGFIELQKKIK 163 >gi|318606467|emb|CBY27965.1| NADH-ubiquinone oxidoreductase chain B [Yersinia enterocolitica subsp. palearctica Y11] Length = 225 Score = 198 bits (505), Expect = 2e-49, Method: Composition-based stats. Identities = 73/146 (50%), Positives = 99/146 (67%), Gaps = 2/146 (1%) Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95 G L ++ +V W R SL FGL+CC VEM+ + +D+ RFG RASPRQ+D Sbjct: 41 GKLENAMHDMVNWGRKNSLWPYNFGLSCCYVEMVTSFTAVHDVARFGAEVLRASPRQADF 100 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155 M+VAGT KMA ++R+Y+QM EP++VISMG+CAN GG Y YSVV+G D+ +PVD+Y Sbjct: 101 MVVAGTCFTKMAPVIQRLYEQMLEPKWVISMGACANSGGMY-DIYSVVQGVDKFLPVDVY 159 Query: 156 VPGCPPTAEALIYGILLLQKKIRRVG 181 +PGCPP EA + +LLLQ+ I + Sbjct: 160 IPGCPPRPEAYMQALLLLQESIGKER 185 >gi|317153001|ref|YP_004121049.1| NADH-quinone oxidoreductase subunit B [Desulfovibrio aespoeensis Aspo-2] gi|316943252|gb|ADU62303.1| NADH-quinone oxidoreductase, B subunit [Desulfovibrio aespoeensis Aspo-2] Length = 181 Score = 198 bits (505), Expect = 2e-49, Method: Composition-based stats. Identities = 75/141 (53%), Positives = 98/141 (69%), Gaps = 3/141 (2%) Query: 40 VTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQSDVMIV 98 + L R+ SL MTFGLACCA+EMM M R+D+ RFG R SPRQSDVMIV Sbjct: 27 LKLAQDLFDVCRSMSLWPMTFGLACCAIEMMATGMARFDMARFGAEVFRPSPRQSDVMIV 86 Query: 99 AGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY--HYSYSVVRGCDRIVPVDIYV 156 AGT+T KMA A+ R+Y+QMP P++VI+MG+CA GG + +Y+V+ G D ++PVD+YV Sbjct: 87 AGTVTKKMAPAVVRLYEQMPGPKWVIAMGNCAISGGPFKIKDNYNVIEGVDTLIPVDVYV 146 Query: 157 PGCPPTAEALIYGILLLQKKI 177 PGCPP E L+ G LQ++I Sbjct: 147 PGCPPRPEGLLEGFFQLQRQI 167 >gi|110637786|ref|YP_677993.1| NADH dehydrogenase subunit B [Cytophaga hutchinsonii ATCC 33406] gi|123163626|sp|Q11VB3|NUOB2_CYTH3 RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName: Full=NADH dehydrogenase I subunit B 2; AltName: Full=NDH-1 subunit B 2 gi|110280467|gb|ABG58653.1| NADH dehydrogenase subunit B [Cytophaga hutchinsonii ATCC 33406] Length = 181 Score = 198 bits (504), Expect = 2e-49, Method: Composition-based stats. Identities = 67/155 (43%), Positives = 97/155 (62%), Gaps = 2/155 (1%) Query: 22 VDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLER 81 D + GF TS+D ++ AR SL + F +CC +E M YD+ R Sbjct: 2 SDIKIEEKPDGLEGPGFFATSLDSVIGLARKNSLWPLPFATSCCGIEFMATMASTYDIAR 61 Query: 82 FGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSY 140 FG P SPRQ+DV++V GT+ KM LR VY+QM EP++V+++G+CA+ GG + +Y Sbjct: 62 FGAERPSFSPRQADVLLVMGTIAKKMGPVLRHVYEQMAEPKWVVAVGACASSGGIF-DTY 120 Query: 141 SVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175 SV++G DRI+PVD+YVPGCPP E +I G++ +Q Sbjct: 121 SVLQGIDRIIPVDVYVPGCPPRPEQIIQGLMRVQD 155 >gi|42524476|ref|NP_969856.1| NADH dehydrogenase I chain B [Bdellovibrio bacteriovorus HD100] gi|81616434|sp|Q6MIR4|NUOB_BDEBA RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|39576685|emb|CAE80849.1| NADH dehydrogenase I chain B [Bdellovibrio bacteriovorus HD100] Length = 187 Score = 198 bits (504), Expect = 3e-49, Method: Composition-based stats. Identities = 79/172 (45%), Positives = 112/172 (65%), Gaps = 12/172 (6%) Query: 8 QKIISGQSSCSLEKVDADFSRISSEITHKGFLVTS-VDQLVTWARTGSLMWMTFGLACCA 66 Q ++S + VD +GF TS +D +V W R SL M +G ACC Sbjct: 7 QGLVSHDGMTGTQAVDD---------MSRGFAFTSKLDAIVAWGRKNSLWPMPYGTACCG 57 Query: 67 VEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVIS 125 +E M P+YDL RFG R SPRQ+D+++VAGT+T KMA + R+Y QM EP+YV+S Sbjct: 58 IEFMSVMGPKYDLARFGAEVARFSPRQADLLVVAGTITEKMAPVIVRIYQQMLEPKYVLS 117 Query: 126 MGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 MG+CA+ GG+Y +Y V++G D+++PVD+Y+PGCPPT EA++ GI+ LQ+ I Sbjct: 118 MGACASSGGFYR-AYHVLQGVDKVIPVDVYIPGCPPTPEAVMDGIMALQRMI 168 >gi|134299891|ref|YP_001113387.1| NADH-quinone oxidoreductase subunit B [Desulfotomaculum reducens MI-1] gi|218527989|sp|A4J659|NUOB_DESRM RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|134052591|gb|ABO50562.1| NADH dehydrogenase subunit B [Desulfotomaculum reducens MI-1] Length = 196 Score = 198 bits (504), Expect = 3e-49, Method: Composition-based stats. Identities = 83/183 (45%), Positives = 121/183 (66%), Gaps = 4/183 (2%) Query: 4 TTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLA 63 V + + ++ L+K+ A+ + I + V +++L+ AR SL M FGLA Sbjct: 11 NPVAKDEMYEETVKRLKKLGAEPAVIGE--VARTVSVGPLEKLLNLARANSLWPMGFGLA 68 Query: 64 CCAVE-MMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPR 121 CCA+E +M A+M R+DL RFG+ RASPRQ+DVM+V GT+T K A + R+Y+QM EP+ Sbjct: 69 CCAIEGLMAANMARFDLARFGYEVMRASPRQADVMLVCGTVTKKAAPFVVRLYEQMAEPK 128 Query: 122 YVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181 YVI+MGSCA GG + SYSVV G D+++PVD+Y+PGC P +A+I+G + L++KI Sbjct: 129 YVIAMGSCAISGGPFVDSYSVVPGVDKLIPVDVYIPGCAPRPDAVIHGFMKLKEKIINPE 188 Query: 182 NVK 184 VK Sbjct: 189 VVK 191 >gi|22125526|ref|NP_668949.1| NADH dehydrogenase subunit B [Yersinia pestis KIM 10] gi|45442154|ref|NP_993693.1| NADH dehydrogenase subunit B [Yersinia pestis biovar Microtus str. 91001] gi|51596905|ref|YP_071096.1| NADH dehydrogenase subunit B [Yersinia pseudotuberculosis IP 32953] gi|108808041|ref|YP_651957.1| NADH dehydrogenase subunit B [Yersinia pestis Antiqua] gi|108812311|ref|YP_648078.1| NADH dehydrogenase subunit B [Yersinia pestis Nepal516] gi|123441677|ref|YP_001005661.1| NADH dehydrogenase subunit B [Yersinia enterocolitica subsp. enterocolitica 8081] gi|145599244|ref|YP_001163320.1| NADH dehydrogenase subunit B [Yersinia pestis Pestoides F] gi|149365540|ref|ZP_01887575.1| NADH dehydrogenase I chain B [Yersinia pestis CA88-4125] gi|162419739|ref|YP_001606303.1| NADH dehydrogenase subunit B [Yersinia pestis Angola] gi|165925479|ref|ZP_02221311.1| NADH-quinone oxidoreductase, B subunit [Yersinia pestis biovar Orientalis str. F1991016] gi|165937679|ref|ZP_02226241.1| NADH-quinone oxidoreductase, B subunit [Yersinia pestis biovar Orientalis str. IP275] gi|166008478|ref|ZP_02229376.1| NADH-quinone oxidoreductase, B subunit [Yersinia pestis biovar Antiqua str. E1979001] gi|166213868|ref|ZP_02239903.1| NADH-quinone oxidoreductase, B subunit [Yersinia pestis biovar Antiqua str. B42003004] gi|167398671|ref|ZP_02304195.1| NADH-quinone oxidoreductase, B subunit [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167422249|ref|ZP_02314002.1| NADH-quinone oxidoreductase, B subunit [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167424429|ref|ZP_02316182.1| NADH-quinone oxidoreductase, B subunit [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167470575|ref|ZP_02335279.1| NADH-quinone oxidoreductase, B subunit [Yersinia pestis FV-1] gi|170023802|ref|YP_001720307.1| NADH dehydrogenase subunit B [Yersinia pseudotuberculosis YPIII] gi|186895986|ref|YP_001873098.1| NADH dehydrogenase subunit B [Yersinia pseudotuberculosis PB1/+] gi|218929640|ref|YP_002347515.1| NADH dehydrogenase subunit B [Yersinia pestis CO92] gi|229838096|ref|ZP_04458255.1| NADH:ubiquinone oxidoreductase, chain B [Yersinia pestis biovar Orientalis str. PEXU2] gi|229895295|ref|ZP_04510469.1| NADH:ubiquinone oxidoreductase, chain B [Yersinia pestis Pestoides A] gi|229898656|ref|ZP_04513801.1| NADH:ubiquinone oxidoreductase, chain B [Yersinia pestis biovar Orientalis str. India 195] gi|229902655|ref|ZP_04517772.1| NADH:ubiquinone oxidoreductase, chain B [Yersinia pestis Nepal516] gi|238759963|ref|ZP_04621116.1| NADH-quinone oxidoreductase subunit B [Yersinia aldovae ATCC 35236] gi|238763927|ref|ZP_04624884.1| NADH-quinone oxidoreductase subunit B [Yersinia kristensenii ATCC 33638] gi|238784999|ref|ZP_04628997.1| NADH-quinone oxidoreductase subunit B [Yersinia bercovieri ATCC 43970] gi|238794606|ref|ZP_04638213.1| NADH-quinone oxidoreductase subunit B [Yersinia intermedia ATCC 29909] gi|238798405|ref|ZP_04641886.1| NADH-quinone oxidoreductase subunit B [Yersinia mollaretii ATCC 43969] gi|270490163|ref|ZP_06207237.1| NADH dehydrogenase subunit B [Yersinia pestis KIM D27] gi|294504368|ref|YP_003568430.1| NADH dehydrogenase beta subunit [Yersinia pestis Z176003] gi|332162388|ref|YP_004298965.1| NADH dehydrogenase subunit B [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|81639043|sp|Q669A1|NUOB_YERPS RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|122979538|sp|Q1C6B0|NUOB_YERPA RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|122980104|sp|Q1CHQ2|NUOB_YERPN RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|123777024|sp|Q7CJ93|NUOB_YERPE RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|238065222|sp|A1JLG4|NUOB_YERE8 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|238065224|sp|B2K820|NUOB_YERPB RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|238065225|sp|A9R6L9|NUOB_YERPG RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|238065226|sp|A4TM35|NUOB_YERPP RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|238065227|sp|B1JGL4|NUOB_YERPY RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|21958425|gb|AAM85200.1|AE013766_3 NADH dehydrogenase I chain B [Yersinia pestis KIM 10] gi|45437018|gb|AAS62570.1| NADH dehydrogenase I chain B [Yersinia pestis biovar Microtus str. 91001] gi|51590187|emb|CAH21824.1| NADH dehydrogenase I chain B [Yersinia pseudotuberculosis IP 32953] gi|108775959|gb|ABG18478.1| NADH dehydrogenase I chain B [Yersinia pestis Nepal516] gi|108779954|gb|ABG14012.1| NADH dehydrogenase I chain B [Yersinia pestis Antiqua] gi|115348251|emb|CAL21179.1| NADH dehydrogenase I chain B [Yersinia pestis CO92] gi|122088638|emb|CAL11433.1| NADH dehydrogenase I chain B [Yersinia enterocolitica subsp. enterocolitica 8081] gi|145210940|gb|ABP40347.1| NADH dehydrogenase I chain B [Yersinia pestis Pestoides F] gi|149291953|gb|EDM42027.1| NADH dehydrogenase I chain B [Yersinia pestis CA88-4125] gi|162352554|gb|ABX86502.1| NADH-quinone oxidoreductase, B subunit [Yersinia pestis Angola] gi|165914429|gb|EDR33044.1| NADH-quinone oxidoreductase, B subunit [Yersinia pestis biovar Orientalis str. IP275] gi|165922588|gb|EDR39739.1| NADH-quinone oxidoreductase, B subunit [Yersinia pestis biovar Orientalis str. F1991016] gi|165992860|gb|EDR45161.1| NADH-quinone oxidoreductase, B subunit [Yersinia pestis biovar Antiqua str. E1979001] gi|166205042|gb|EDR49522.1| NADH-quinone oxidoreductase, B subunit [Yersinia pestis biovar Antiqua str. B42003004] gi|166958755|gb|EDR55776.1| NADH-quinone oxidoreductase, B subunit [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167051175|gb|EDR62583.1| NADH-quinone oxidoreductase, B subunit [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167056311|gb|EDR66080.1| NADH-quinone oxidoreductase, B subunit [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169750336|gb|ACA67854.1| NADH-quinone oxidoreductase, B subunit [Yersinia pseudotuberculosis YPIII] gi|186699012|gb|ACC89641.1| NADH-quinone oxidoreductase, B subunit [Yersinia pseudotuberculosis PB1/+] gi|229680102|gb|EEO76201.1| NADH:ubiquinone oxidoreductase, chain B [Yersinia pestis Nepal516] gi|229688204|gb|EEO80275.1| NADH:ubiquinone oxidoreductase, chain B [Yersinia pestis biovar Orientalis str. India 195] gi|229694462|gb|EEO84509.1| NADH:ubiquinone oxidoreductase, chain B [Yersinia pestis biovar Orientalis str. PEXU2] gi|229701781|gb|EEO89806.1| NADH:ubiquinone oxidoreductase, chain B [Yersinia pestis Pestoides A] gi|238697895|gb|EEP90655.1| NADH-quinone oxidoreductase subunit B [Yersinia kristensenii ATCC 33638] gi|238701790|gb|EEP94354.1| NADH-quinone oxidoreductase subunit B [Yersinia aldovae ATCC 35236] gi|238714115|gb|EEQ06129.1| NADH-quinone oxidoreductase subunit B [Yersinia bercovieri ATCC 43970] gi|238717719|gb|EEQ09554.1| NADH-quinone oxidoreductase subunit B [Yersinia mollaretii ATCC 43969] gi|238726092|gb|EEQ17639.1| NADH-quinone oxidoreductase subunit B [Yersinia intermedia ATCC 29909] gi|262362643|gb|ACY59364.1| NADH dehydrogenase beta subunit [Yersinia pestis D106004] gi|270338667|gb|EFA49444.1| NADH dehydrogenase subunit B [Yersinia pestis KIM D27] gi|294354827|gb|ADE65168.1| NADH dehydrogenase beta subunit [Yersinia pestis Z176003] gi|320014608|gb|ADV98179.1| NADH:ubiquinone oxidoreductase, chain B [Yersinia pestis biovar Medievalis str. Harbin 35] gi|325666618|gb|ADZ43262.1| NADH dehydrogenase subunit B [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330860335|emb|CBX70648.1| NADH-quinone oxidoreductase subunit B [Yersinia enterocolitica W22703] Length = 225 Score = 198 bits (504), Expect = 3e-49, Method: Composition-based stats. Identities = 73/146 (50%), Positives = 99/146 (67%), Gaps = 2/146 (1%) Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95 G L ++ +V W R SL FGL+CC VEM+ + +D+ RFG RASPRQ+D Sbjct: 41 GKLENAMHDMVNWGRKNSLWPYNFGLSCCYVEMVTSFTAVHDVARFGAEVLRASPRQADF 100 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155 M+VAGT KMA ++R+Y+QM EP++VISMG+CAN GG Y YSVV+G D+ +PVD+Y Sbjct: 101 MVVAGTCFTKMAPVIQRLYEQMLEPKWVISMGACANSGGMY-DIYSVVQGVDKFLPVDVY 159 Query: 156 VPGCPPTAEALIYGILLLQKKIRRVG 181 +PGCPP EA + +LLLQ+ I + Sbjct: 160 IPGCPPRPEAYMQALLLLQESIGKER 185 >gi|227112326|ref|ZP_03825982.1| NADH dehydrogenase subunit B [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 224 Score = 198 bits (504), Expect = 3e-49, Method: Composition-based stats. Identities = 75/166 (45%), Positives = 103/166 (62%), Gaps = 2/166 (1%) Query: 17 CSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPR 76 S E V + + G L ++ V W R SL FGL+CC VEM+ + Sbjct: 20 QSQEIVSDPLEQHVHRSVYMGKLEHALHDTVNWGRQNSLWPYNFGLSCCYVEMVTSFTAV 79 Query: 77 YDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY 135 +D+ RFG RASPRQ+D M+VAGT KMA ++R+Y+QM EP++VISMG+CAN GG Sbjct: 80 HDVARFGAEVLRASPRQADFMVVAGTCFTKMAPVIQRLYEQMLEPKWVISMGACANSGGM 139 Query: 136 YHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181 Y YSVV+G D+ +PVD+Y+PGCPP EA + +LLL++ I + Sbjct: 140 Y-DIYSVVQGVDKFLPVDVYIPGCPPRPEAYMQALLLLKESIGKER 184 >gi|255037834|ref|YP_003088455.1| NADH dehydrogenase subunit B [Dyadobacter fermentans DSM 18053] gi|254950590|gb|ACT95290.1| NADH-quinone oxidoreductase, B subunit [Dyadobacter fermentans DSM 18053] Length = 180 Score = 198 bits (504), Expect = 3e-49, Method: Composition-based stats. Identities = 68/155 (43%), Positives = 102/155 (65%), Gaps = 7/155 (4%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQ 92 + GF TS D+ + AR+ SL + F +CC +E M YD+ RFG P SPRQ Sbjct: 14 SGSGFFATSFDEAIGLARSYSLWPLPFATSCCGIEFMATMGAHYDISRFGSERPSFSPRQ 73 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 +D+++V GT+ KMA +++VY QM EPR+V+++G+CA+ GG + +YSV++G DRI+PV Sbjct: 74 ADLLMVMGTIAKKMAPVVKQVYLQMAEPRWVMAVGACASSGGIF-DTYSVLQGIDRIIPV 132 Query: 153 DIYVPGCPPTAEALIYGILLLQ-----KKIRRVGN 182 D+YVPGCPP E +I G++ +Q +K+RR Sbjct: 133 DVYVPGCPPRPEQIIDGLMQIQYLAQNEKLRRRNT 167 >gi|317048938|ref|YP_004116586.1| NADH-quinone oxidoreductase subunit B [Pantoea sp. At-9b] gi|316950555|gb|ADU70030.1| NADH-quinone oxidoreductase, B subunit [Pantoea sp. At-9b] Length = 225 Score = 198 bits (504), Expect = 3e-49, Method: Composition-based stats. Identities = 74/173 (42%), Positives = 104/173 (60%), Gaps = 5/173 (2%) Query: 13 GQSSCSLEKVDADFSRISSEITHK---GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEM 69 L+K + + + G L ++ +V W R SL FGL+CC VEM Sbjct: 14 DNDRYPLQKQEIVADPLEQHVHRSVYMGKLEHALHDMVNWGRKNSLWPYNFGLSCCYVEM 73 Query: 70 MQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGS 128 + +D+ RFG RASPRQ+D M++AGT KMA ++R+YDQM EP++VISMG+ Sbjct: 74 TTSFTAVHDVARFGAEVMRASPRQADFMVIAGTPFTKMAPVIQRLYDQMLEPKWVISMGA 133 Query: 129 CANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181 CAN GG Y YSVV+G D+ +PVD+Y+PGCPP EA + +LLL++ I + Sbjct: 134 CANSGGMY-DIYSVVQGVDKFLPVDVYIPGCPPRPEAYMQALLLLRESIGKER 185 >gi|269218338|ref|ZP_06162192.1| NADH-quinone oxidoreductase, B subunit [Actinomyces sp. oral taxon 848 str. F0332] gi|269212197|gb|EEZ78537.1| NADH-quinone oxidoreductase, B subunit [Actinomyces sp. oral taxon 848 str. F0332] Length = 199 Score = 198 bits (503), Expect = 3e-49, Method: Composition-based stats. Identities = 73/164 (44%), Positives = 113/164 (68%), Gaps = 2/164 (1%) Query: 21 KVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLE 80 + ++ ++ + +G +TSV+ + WA T S +T GLACCA+EMM PR+D Sbjct: 7 RAESRGAQAPHDAGSQGVFLTSVEAVANWAVTNSQWPVTMGLACCAIEMMSFGTPRFDAA 66 Query: 81 RFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS 139 RFG RASPRQ+D+MIV+G +++KMA +R +YD+M +P++V+SMG CA+ GG ++ Sbjct: 67 RFGMEVFRASPRQADLMIVSGRVSHKMAPVVRDIYDKMTDPKWVVSMGVCASSGGMFNN- 125 Query: 140 YSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 Y++V+GCD IVPVD+Y+PGCPP E LI +L L++ ++R + Sbjct: 126 YAIVQGCDHIVPVDVYLPGCPPRPEMLINAVLELREHVKRNRRL 169 >gi|116329153|ref|YP_798873.1| NADH dehydrogenase (ubiquinone), B chain [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116330239|ref|YP_799957.1| NADH dehydrogenase (ubiquinone), B chain [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|122281998|sp|Q04V71|NUOB_LEPBJ RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|122283065|sp|Q04YA5|NUOB_LEPBL RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|116121897|gb|ABJ79940.1| NADH dehydrogenase (ubiquinone), B chain [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116123928|gb|ABJ75199.1| NADH dehydrogenase (ubiquinone), B chain [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 186 Score = 198 bits (503), Expect = 3e-49, Method: Composition-based stats. Identities = 69/159 (43%), Positives = 105/159 (66%), Gaps = 2/159 (1%) Query: 24 ADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFG 83 +D S+ + + +++ ++ W R SL F ACC +E M + YD+ RFG Sbjct: 4 SDLSKAPGQALGDMLQLGNIESVIQWGRGNSLWPFPFATACCGIEYMSTACSDYDIARFG 63 Query: 84 FA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142 P SPRQ+D+++V GT+T KMA LR++YDQM EP++VIS+G+CA+ GG ++ +Y V Sbjct: 64 AERPSFSPRQADMILVLGTITYKMAPVLRQIYDQMAEPKFVISVGACASSGGMFN-TYGV 122 Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181 ++G DRI+PVDIYVPGCPP EA++ ++ LQ K++ G Sbjct: 123 LQGVDRILPVDIYVPGCPPRPEAILDALVKLQTKLKTQG 161 >gi|312131895|ref|YP_003999235.1| NADH dehydrogenase subunit b [Leadbetterella byssophila DSM 17132] gi|311908441|gb|ADQ18882.1| NADH dehydrogenase subunit B [Leadbetterella byssophila DSM 17132] Length = 185 Score = 198 bits (503), Expect = 3e-49, Method: Composition-based stats. Identities = 66/145 (45%), Positives = 100/145 (68%), Gaps = 2/145 (1%) Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQSDV 95 GF TS+D+++ AR+ SL + F +CC +E M YD+ RFG P SPRQSDV Sbjct: 17 GFFATSLDKVIGLARSHSLWPLPFATSCCGIEFMATMGAHYDISRFGAERPSFSPRQSDV 76 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155 ++V GT+ KMA +++VY QM EPR+VI++G+CA+ GG + +YSV++G DR++PVD+Y Sbjct: 77 LLVMGTIAKKMAPVVKQVYLQMAEPRWVIAVGACASSGGIF-DTYSVLQGIDRVIPVDVY 135 Query: 156 VPGCPPTAEALIYGILLLQKKIRRV 180 VPGCPP E ++ G++ +Q+ + Sbjct: 136 VPGCPPRPEQILDGLMQVQELAKNE 160 >gi|304311496|ref|YP_003811094.1| NADH dehydrogenase I, chain B [gamma proteobacterium HdN1] gi|301797229|emb|CBL45449.1| NADH dehydrogenase I, chain B [gamma proteobacterium HdN1] Length = 224 Score = 198 bits (503), Expect = 3e-49, Method: Composition-based stats. Identities = 76/184 (41%), Positives = 109/184 (59%), Gaps = 9/184 (4%) Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQ----LVTWARTGSLMWM 58 LT VN +E+ + ++ ++ ++ ++ +V W R S+ Sbjct: 5 LTRVNPN--GPHDRYPVEEKQIVSDPLEDQV-NRNVMMGRLEDMLHGVVNWGRKNSIWPY 61 Query: 59 TFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQM 117 FGL+CC VE+ A +D+ RFG RASPRQ+D+M+VAGT KMA ++R+Y+QM Sbjct: 62 NFGLSCCYVEVTTAFTAPHDIARFGSEVLRASPRQADLMVVAGTCFVKMAPVVQRLYEQM 121 Query: 118 PEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 EPR+VISMG+CAN GG Y YSVV+G D+ +PVD+YVPGCPP EA + + LLQ I Sbjct: 122 LEPRWVISMGACANSGGMY-DIYSVVQGVDKFLPVDVYVPGCPPRPEAFLQALQLLQDSI 180 Query: 178 RRVG 181 + Sbjct: 181 GKER 184 >gi|226944919|ref|YP_002799992.1| NADH dehydrogenase subunit B [Azotobacter vinelandii DJ] gi|259514652|sp|C1DL15|NUOB_AZOVD RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|226719846|gb|ACO79017.1| NADH-ubiquinone oxidoreductase, chain beta [Azotobacter vinelandii DJ] Length = 224 Score = 198 bits (503), Expect = 3e-49, Method: Composition-based stats. Identities = 72/175 (41%), Positives = 106/175 (60%), Gaps = 7/175 (4%) Query: 12 SGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQL----VTWARTGSLMWMTFGLACCAV 67 + + + + ++ H+ + ++ + V W R SL FGL+CC V Sbjct: 12 ASYEQYPIGERETVTDPSEGQV-HRNIFMGKLEDVLSGAVNWGRKNSLWPYNFGLSCCYV 70 Query: 68 EMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISM 126 EM A +D+ RFG RASPRQ+D M++AGT KMA ++R+Y+QM EP++VISM Sbjct: 71 EMTTAFTAPHDIARFGAEVIRASPRQADFMVIAGTCFIKMAPIIQRLYEQMLEPKWVISM 130 Query: 127 GSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181 GSCAN GG Y YSVV+G D+ +P+D+Y+PGCPP EA + G++LLQ+ I + Sbjct: 131 GSCANSGGMY-DIYSVVQGVDKFLPIDVYIPGCPPRPEAFLQGLMLLQESIGQER 184 >gi|50121950|ref|YP_051117.1| NADH dehydrogenase subunit B [Pectobacterium atrosepticum SCRI1043] gi|227326166|ref|ZP_03830190.1| NADH dehydrogenase subunit B [Pectobacterium carotovorum subsp. carotovorum WPP14] gi|253689147|ref|YP_003018337.1| NADH-quinone oxidoreductase, B subunit [Pectobacterium carotovorum subsp. carotovorum PC1] gi|6647661|sp|O85274|NUOB_PECCC RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|81644464|sp|Q6D2R8|NUOB_ERWCT RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|259514671|sp|C6DA45|NUOB_PECCP RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|3273736|gb|AAC38641.1| NADH dehydrogenase chain B [Pectobacterium carotovorum subsp. carotovorum] gi|49612476|emb|CAG75926.1| NADH-quinone oxidoreductase chain B [Pectobacterium atrosepticum SCRI1043] gi|251755725|gb|ACT13801.1| NADH-quinone oxidoreductase, B subunit [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 224 Score = 198 bits (503), Expect = 3e-49, Method: Composition-based stats. Identities = 75/185 (40%), Positives = 107/185 (57%), Gaps = 5/185 (2%) Query: 1 MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHK---GFLVTSVDQLVTWARTGSLMW 57 M T + L++ + + + G L ++ V W R SL Sbjct: 1 MDYTLTRIEPDGENDRYPLQRQEIVSDPLEQHVHRSVYMGKLEHALHDTVNWGRQNSLWP 60 Query: 58 MTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQ 116 FGL+CC VEM+ + +D+ RFG RASPRQ+D M+VAGT KMA ++R+Y+Q Sbjct: 61 YNFGLSCCYVEMVTSFTAVHDVARFGAEVLRASPRQADFMVVAGTCFTKMAPVIQRLYEQ 120 Query: 117 MPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKK 176 M EP++VISMG+CAN GG Y YSVV+G D+ +PVD+Y+PGCPP EA + +LLL++ Sbjct: 121 MLEPKWVISMGACANSGGMY-DIYSVVQGVDKFLPVDVYIPGCPPRPEAYMQALLLLKES 179 Query: 177 IRRVG 181 I + Sbjct: 180 IGKER 184 >gi|226489136|emb|CAX74917.1| NADH dehydrogenase (ubiquinone) Fe-S protein 7 [Schistosoma japonicum] Length = 176 Score = 198 bits (503), Expect = 4e-49, Method: Composition-based stats. Identities = 86/153 (56%), Positives = 110/153 (71%), Gaps = 3/153 (1%) Query: 5 TVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLAC 64 + K + F + ++ F++T +D L WAR S+ +TFGLAC Sbjct: 26 PSEPSKVDNPDESIPYKPYSPFPKPQGKLD---FVLTRLDDLANWARKNSIYPLTFGLAC 82 Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 CAVEMM + PRYD++R+G RASPRQ+D+MIV+GT+TNKMA ALRR+YDQM P++VI Sbjct: 83 CAVEMMHIAGPRYDMDRYGVVFRASPRQADLMIVSGTVTNKMAPALRRIYDQMTHPKWVI 142 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 SMGSCANGGGYYHYSYSV+RGCDR++PVDIYVP Sbjct: 143 SMGSCANGGGYYHYSYSVLRGCDRVIPVDIYVP 175 >gi|255533962|ref|YP_003094334.1| NADH dehydrogenase subunit B [Pedobacter heparinus DSM 2366] gi|255346946|gb|ACU06272.1| NADH-quinone oxidoreductase, B subunit [Pedobacter heparinus DSM 2366] Length = 180 Score = 198 bits (503), Expect = 4e-49, Method: Composition-based stats. Identities = 66/164 (40%), Positives = 102/164 (62%), Gaps = 2/164 (1%) Query: 22 VDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLER 81 D + I GF TS+D+++ AR+ SL + F +CC +E M YD R Sbjct: 2 SDINIVEAPPGIEGSGFFATSLDKVIGLARSHSLWPLPFATSCCGIEFMATMGSHYDFGR 61 Query: 82 FGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSY 140 FG SPRQ+D+++V GT+ KM+ L++VY QM EPR+V+++G+CA+ GG + +Y Sbjct: 62 FGSERLSFSPRQADLLMVMGTIAKKMSPVLKQVYLQMAEPRWVMAVGACASSGGIF-DTY 120 Query: 141 SVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 SV++G D I+PVD+YVPGCPP EA++ G +Q+ +R + + Sbjct: 121 SVLQGIDEIIPVDVYVPGCPPRPEAILDGFGKIQELVRNESSRR 164 >gi|51893915|ref|YP_076606.1| NADH dehydrogenase I subunit B [Symbiobacterium thermophilum IAM 14863] gi|81610392|sp|Q67KN6|NUOB2_SYMTH RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName: Full=NADH dehydrogenase I subunit B 2; AltName: Full=NDH-1 subunit B 2 gi|51857604|dbj|BAD41762.1| NADH dehydrogenase I subunit B [Symbiobacterium thermophilum IAM 14863] Length = 182 Score = 198 bits (503), Expect = 4e-49, Method: Composition-based stats. Identities = 74/151 (49%), Positives = 105/151 (69%), Gaps = 1/151 (0%) Query: 29 ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PR 87 + +E G L + +++ W S + FG+ACCA+EMM A +YD+ RFG R Sbjct: 22 VVNENVIAGKLPDVIKKVLGWGYGNSTWPLGFGIACCAIEMMAACSSKYDIARFGSEAMR 81 Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCD 147 SPRQ+DVMIVAGT+ KMA +RR+YDQM EP++VI+MG+CA+ GG Y +Y+VV G Sbjct: 82 MSPRQADVMIVAGTVNEKMAVVVRRLYDQMSEPKFVIAMGACASNGGPYWDTYNVVDGVH 141 Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 ++VPVD+YVPGCPP EAL+ G++ +Q+ I+ Sbjct: 142 KVVPVDVYVPGCPPRPEALLQGLMEIQEMIK 172 >gi|308275204|emb|CBX31801.1| NADH-quinone oxidoreductase subunit B 2 [uncultured Desulfobacterium sp.] Length = 183 Score = 198 bits (503), Expect = 4e-49, Method: Composition-based stats. Identities = 77/141 (54%), Positives = 102/141 (72%), Gaps = 2/141 (1%) Query: 41 TSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAG 100 V L+ AR SL +TFG+ACCA+EMM A M R+DL+RFG RASPRQSDVM+VAG Sbjct: 25 APVQNLLNLARVNSLWPITFGIACCAIEMMAAGMARFDLDRFGTIFRASPRQSDVMVVAG 84 Query: 101 TLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS--YSVVRGCDRIVPVDIYVPG 158 T++ K+ +R +YDQMP P++V++MG+CA GG + Y Y++V G D+I+PVDIY+PG Sbjct: 85 TISKKLVPTIRTLYDQMPGPKWVMAMGNCAISGGPFAYDGQYAIVNGTDKIIPVDIYIPG 144 Query: 159 CPPTAEALIYGILLLQKKIRR 179 CPP EA I G+L LQ I + Sbjct: 145 CPPRPEAFIQGLLKLQTLISK 165 >gi|148260123|ref|YP_001234250.1| NADH-quinone oxidoreductase, B subunit [Acidiphilium cryptum JF-5] gi|238065025|sp|A5FXJ9|NUOB2_ACICJ RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName: Full=NADH dehydrogenase I subunit B 2; AltName: Full=NDH-1 subunit B 2 gi|146401804|gb|ABQ30331.1| NADH dehydrogenase subunit B [Acidiphilium cryptum JF-5] Length = 231 Score = 198 bits (503), Expect = 4e-49, Method: Composition-based stats. Identities = 68/170 (40%), Positives = 106/170 (62%), Gaps = 2/170 (1%) Query: 9 KIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVE 68 ++ G + + ++ + + ++ +V W R S+ FGL+CC VE Sbjct: 19 PLLRGLGTAGQPAAPSPGGGTFTDAVRRNVALGRLEDMVAWGRKYSIWPFNFGLSCCYVE 78 Query: 69 MMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMG 127 M A ++D+ RFG RA+PR++D+++++GT+ KMA ++ +YDQM EPR+VISMG Sbjct: 79 MATAFTSKFDIARFGSEVLRATPREADLIVISGTVFVKMAPVIKYLYDQMLEPRWVISMG 138 Query: 128 SCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 +CAN GG Y Y+VV+G D +PVD+YVPGCPP +AL+ G++LLQ I Sbjct: 139 ACANSGGMY-DIYAVVQGADSFLPVDVYVPGCPPRPDALLEGLMLLQNSI 187 >gi|253729561|ref|YP_003029744.1| NdhK [Bambusa oldhamii] gi|246367071|gb|ACS94682.1| NdhK [Bambusa oldhamii] Length = 253 Score = 197 bits (502), Expect = 4e-49, Method: Composition-based stats. Identities = 61/154 (39%), Positives = 95/154 (61%), Gaps = 1/154 (0%) Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87 + + + T+ + W++ SL + +G +CC +E R+D +R+G+ P+ Sbjct: 35 PLLDQTSSNSVFSTTPNDFSNWSKLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGWVPK 94 Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146 +SPRQ+++++ AG T KMA +L R Y Q PEP+YVI+ G+C GG + SYS VRG Sbjct: 95 SSPRQANLILTAGPETMKMAPSLVRFYKQRPEPKYVIARGACTITGGMFSTDSYSTVRGV 154 Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 D++ PVD+Y+PGCPP EA+I + L+KKI R Sbjct: 155 DKLNPVDVYLPGCPPKPEAVIDALTKLRKKISRE 188 >gi|146277729|ref|YP_001167888.1| NADH dehydrogenase subunit B [Rhodobacter sphaeroides ATCC 17025] gi|238065015|sp|A4WT69|NUOB1_RHOS5 RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName: Full=NADH dehydrogenase I subunit B 1; AltName: Full=NDH-1 subunit B 1 gi|145555970|gb|ABP70583.1| NADH-quinone oxidoreductase, B subunit [Rhodobacter sphaeroides ATCC 17025] Length = 205 Score = 197 bits (502), Expect = 4e-49, Method: Composition-based stats. Identities = 79/152 (51%), Positives = 100/152 (65%), Gaps = 2/152 (1%) Query: 27 SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP 86 + + L T +D LV W+R SL FGL+CC VEM A P YD RFG Sbjct: 10 AEAPEDRMAASHLFTRLDDLVAWSRKHSLWPFNFGLSCCYVEMATALTPVYDQARFGAEV 69 Query: 87 -RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRG 145 R++PRQ+D++IV+GT+ KMA L R+Y QM EPR+VISMG+CAN GG Y YSVV+G Sbjct: 70 IRSTPRQADLLIVSGTVFRKMAVPLYRLYQQMREPRWVISMGACANSGGMY-DIYSVVQG 128 Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 D +PVD+YVPGCPP EAL+ ++LLQ KI Sbjct: 129 VDSFLPVDVYVPGCPPRPEALMEALVLLQSKI 160 >gi|242278962|ref|YP_002991091.1| NADH-quinone oxidoreductase, B subunit [Desulfovibrio salexigens DSM 2638] gi|242121856|gb|ACS79552.1| NADH-quinone oxidoreductase, B subunit [Desulfovibrio salexigens DSM 2638] Length = 179 Score = 197 bits (502), Expect = 4e-49, Method: Composition-based stats. Identities = 69/137 (50%), Positives = 97/137 (70%), Gaps = 3/137 (2%) Query: 44 DQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQSDVMIVAGTL 102 + + R+ SL MTFGLACCA+EMM M R+D+ RFG R S RQ+D+MIVAGT+ Sbjct: 25 EDAMNICRSMSLWPMTFGLACCAIEMMAVGMARFDMARFGAEVFRPSARQADLMIVAGTV 84 Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGY--YHYSYSVVRGCDRIVPVDIYVPGCP 160 T KMA A+ R+Y+QMP P++V+++G+CA GG + Y +V G D ++PVD+YVPGCP Sbjct: 85 TKKMAPAVVRLYEQMPAPKWVLALGNCAISGGPFKFKGQYGIVEGVDNLIPVDVYVPGCP 144 Query: 161 PTAEALIYGILLLQKKI 177 P EAL+ G+ +Q+K+ Sbjct: 145 PRPEALLEGLFQIQEKV 161 >gi|326402924|ref|YP_004283005.1| NADH-quinone oxidoreductase subunit B [Acidiphilium multivorum AIU301] gi|325049785|dbj|BAJ80123.1| NADH-quinone oxidoreductase subunit B [Acidiphilium multivorum AIU301] Length = 231 Score = 197 bits (502), Expect = 4e-49, Method: Composition-based stats. Identities = 68/170 (40%), Positives = 106/170 (62%), Gaps = 2/170 (1%) Query: 9 KIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVE 68 ++ G + + ++ + + ++ +V W R S+ FGL+CC VE Sbjct: 19 PLLRGLGTAGQPAAPSPGGGTFTDAVRRNVALGRLEDMVAWGRKYSIWPFNFGLSCCYVE 78 Query: 69 MMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMG 127 M A ++D+ RFG RA+PR++D+++++GT+ KMA ++ +YDQM EPR+VISMG Sbjct: 79 MATAFTSKFDIARFGSEVLRATPREADLIVISGTVFVKMAPVIKYLYDQMLEPRWVISMG 138 Query: 128 SCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 +CAN GG Y Y+VV+G D +PVD+YVPGCPP +AL+ G++LLQ I Sbjct: 139 ACANSGGMY-DIYAVVQGADSFLPVDVYVPGCPPRPDALLEGLMLLQNSI 187 >gi|304312241|ref|YP_003811839.1| NADH dehydrogenase I, chain B [gamma proteobacterium HdN1] gi|301797974|emb|CBL46196.1| NADH dehydrogenase I, chain B [gamma proteobacterium HdN1] Length = 222 Score = 197 bits (502), Expect = 4e-49, Method: Composition-based stats. Identities = 70/148 (47%), Positives = 105/148 (70%), Gaps = 2/148 (1%) Query: 32 EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASP 90 E + ++ ++++V+W+++ SL FGL+CC VEM ++DL RFG R SP Sbjct: 32 EALRQNVVMGKLEEMVSWSQSNSLWPFNFGLSCCYVEMATTFTSQFDLARFGAEVIRGSP 91 Query: 91 RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150 RQ+D+++++GT+ KMA L R+Y+Q+ EPR+VISMGSCAN GG Y YSVV+G D+ + Sbjct: 92 RQADLIVISGTVFRKMAPVLERLYEQLIEPRWVISMGSCANSGGMY-DIYSVVQGVDKFL 150 Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIR 178 PVD+YV GCPP +AL+ G++LLQ +I+ Sbjct: 151 PVDVYVQGCPPRPDALLEGLILLQNQIK 178 >gi|271501267|ref|YP_003334292.1| NADH-quinone oxidoreductase subunit B [Dickeya dadantii Ech586] gi|307131813|ref|YP_003883829.1| NADH:ubiquinone oxidoreductase subunit B [Dickeya dadantii 3937] gi|270344822|gb|ACZ77587.1| NADH-quinone oxidoreductase, B subunit [Dickeya dadantii Ech586] gi|306529342|gb|ADM99272.1| NADH:ubiquinone oxidoreductase, chain B [Dickeya dadantii 3937] Length = 224 Score = 197 bits (502), Expect = 5e-49, Method: Composition-based stats. Identities = 75/172 (43%), Positives = 104/172 (60%), Gaps = 5/172 (2%) Query: 14 QSSCSLEKVDADFSRISSEITHKGF---LVTSVDQLVTWARTGSLMWMTFGLACCAVEMM 70 L+K + + + F L S+ +V W R+ SL FGL+CC VEM Sbjct: 14 NDRYPLQKQEIVSDPLEQHVNRSVFMGNLEQSLHSMVNWGRSNSLWPYNFGLSCCYVEMA 73 Query: 71 QASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSC 129 + +D+ RFG RASPRQ+D M+VAGT KMA ++R+YDQM P++VISMG+C Sbjct: 74 TSFTSVHDVARFGSEVIRASPRQADFMVVAGTPFLKMAPVIQRLYDQMLAPKWVISMGAC 133 Query: 130 ANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181 AN GG Y YSVV+G D+ +PVD+Y+PGCPP EA + +LLL++ I + Sbjct: 134 ANSGGMY-DIYSVVQGVDKFLPVDVYIPGCPPRPEAYMQALLLLKESIGKER 184 >gi|227494504|ref|ZP_03924820.1| NADH dehydrogenase (quinone) [Actinomyces coleocanis DSM 15436] gi|226832238|gb|EEH64621.1| NADH dehydrogenase (quinone) [Actinomyces coleocanis DSM 15436] Length = 184 Score = 197 bits (502), Expect = 5e-49, Method: Composition-based stats. Identities = 76/151 (50%), Positives = 110/151 (72%), Gaps = 2/151 (1%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89 E G +TS++ ++ AR S +T GLACC++EMM A PR+D+ RFG RAS Sbjct: 4 EESLPSGVALTSIEAVLDLARKHSQWPVTMGLACCSIEMMSAGTPRFDMARFGLEVFRAS 63 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PR +D+MI+AG +++KMA +RRVYD MPEP++VI+MG+CA+ GG ++ Y++V+G D I Sbjct: 64 PRHADLMIIAGRMSHKMAPIVRRVYDSMPEPKWVIAMGACASSGGMFNN-YALVQGADHI 122 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 VPVD+Y+PGCPP EALI IL+L+++I + Sbjct: 123 VPVDVYLPGCPPRPEALINSILVLREQISKE 153 >gi|316935784|ref|YP_004110766.1| NADH-quinone oxidoreductase subunit B [Rhodopseudomonas palustris DX-1] gi|315603498|gb|ADU46033.1| NADH-quinone oxidoreductase, B subunit [Rhodopseudomonas palustris DX-1] Length = 208 Score = 197 bits (501), Expect = 5e-49, Method: Composition-based stats. Identities = 71/152 (46%), Positives = 102/152 (67%), Gaps = 2/152 (1%) Query: 27 SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP 86 R E L T+++ L W+R SL FGL+CC VE + P YD RFG Sbjct: 14 QRSVEEHMALSSLFTTLEDLTAWSRKHSLWPFNFGLSCCYVEQVTVLTPVYDQARFGAEV 73 Query: 87 -RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRG 145 RASPRQ+D+++V+GT+ +KMA+ L R+Y+QM PR+VI+MG+CA GG Y YSVV+G Sbjct: 74 IRASPRQADLLVVSGTVFHKMAAPLLRLYEQMRAPRWVIAMGACACSGGMY-DIYSVVQG 132 Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 DR +PVD+Y+PGCPP EA++ +++LQ+++ Sbjct: 133 VDRFIPVDVYIPGCPPRPEAVLDALIMLQQQV 164 >gi|317123846|ref|YP_004097958.1| NADH dehydrogenase subunit B [Intrasporangium calvum DSM 43043] gi|315587934|gb|ADU47231.1| NADH dehydrogenase subunit B [Intrasporangium calvum DSM 43043] Length = 184 Score = 197 bits (501), Expect = 6e-49, Method: Composition-based stats. Identities = 74/151 (49%), Positives = 106/151 (70%), Gaps = 2/151 (1%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89 E GFL+++V+ L + R S+ +TFGLACCA+EMM P YD+ RFG A+ Sbjct: 4 EEKLPAGFLLSTVEGLAGYMRKASMWPVTFGLACCAIEMMAVGTPDYDIARFGMERFSAT 63 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQ+D+MIVAG ++ KMA +R+VYDQMP P++VISMG CA+ GG ++ Y++V+G D I Sbjct: 64 PRQADLMIVAGRVSQKMAPVVRQVYDQMPNPKWVISMGVCASSGGMFNN-YAIVQGVDHI 122 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 +PVDIY+PGCPP + L+ I+ L K+++ Sbjct: 123 IPVDIYLPGCPPRPQMLLNAIIELHKQVQST 153 >gi|39937323|ref|NP_949599.1| NADH dehydrogenase subunit B [Rhodopseudomonas palustris CGA009] gi|192293103|ref|YP_001993708.1| NADH dehydrogenase subunit B [Rhodopseudomonas palustris TIE-1] gi|81619355|sp|Q6N1Y9|NUOB2_RHOPA RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName: Full=NADH dehydrogenase I subunit B 2; AltName: Full=NDH-1 subunit B 2 gi|238065035|sp|B3Q6T4|NUOB2_RHOPT RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName: Full=NADH dehydrogenase I subunit B 2; AltName: Full=NDH-1 subunit B 2 gi|39651181|emb|CAE29704.1| NADH-ubiquinone dehydrogenase chain B [Rhodopseudomonas palustris CGA009] gi|192286852|gb|ACF03233.1| NADH-quinone oxidoreductase, B subunit [Rhodopseudomonas palustris TIE-1] Length = 208 Score = 197 bits (501), Expect = 6e-49, Method: Composition-based stats. Identities = 72/155 (46%), Positives = 103/155 (66%), Gaps = 2/155 (1%) Query: 24 ADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFG 83 D R E L T+++ L W+R SL FGL+CC VE + P YD RFG Sbjct: 11 PDEQRSVEEHMALSSLFTTLEDLTAWSRKHSLWPFNFGLSCCYVEQVTVLTPVYDQARFG 70 Query: 84 FAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142 RASPRQ+D+++V+GT+ +KMA+ L R+Y+QM PR+VI+MG+CA GG Y YSV Sbjct: 71 AEVIRASPRQADLLVVSGTVFHKMAAPLLRLYEQMRAPRWVIAMGACACSGGMY-DIYSV 129 Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 V+G DR +PVD+Y+PGCPP EA++ +++LQ+++ Sbjct: 130 VQGVDRFIPVDVYIPGCPPRPEAVLDALIMLQQQV 164 >gi|116754357|ref|YP_843475.1| NADH-quinone oxidoreductase, B subunit [Methanosaeta thermophila PT] gi|116665808|gb|ABK14835.1| F420H2 dehydrogenase subunit B [Methanosaeta thermophila PT] Length = 190 Score = 197 bits (501), Expect = 6e-49, Method: Composition-based stats. Identities = 60/160 (37%), Positives = 100/160 (62%) Query: 25 DFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF 84 D ++E H+ + + ++ W R SL ++ + CC VEM+ P YD +RFG Sbjct: 29 DVWFTTTEKIHQIIQMGPIKNVLNWGRKNSLWFLMQPMGCCGVEMLVFGCPHYDCDRFGI 88 Query: 85 APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR 144 PRA+PRQ+DVMI++G +T K A++ +++QM EP++ I++G CA GG ++ SY++++ Sbjct: 89 IPRATPRQADVMIISGYITRKYLPAIKNLWEQMLEPKWCIAVGECAISGGPFYDSYNIIQ 148 Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 P+D+YVPGCPP E I G + LQ+KI++ + + Sbjct: 149 NTSDFFPIDVYVPGCPPRPEQFIKGFVELQEKIKQRKDKR 188 >gi|77463673|ref|YP_353177.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit [Rhodobacter sphaeroides 2.4.1] gi|221639516|ref|YP_002525778.1| NADH dehydrogenase subunit B [Rhodobacter sphaeroides KD131] gi|332558529|ref|ZP_08412851.1| NADH dehydrogenase subunit B [Rhodobacter sphaeroides WS8N] gi|123591710|sp|Q3J1Q8|NUOB2_RHOS4 RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName: Full=NADH dehydrogenase I subunit B 2; AltName: Full=NDH-1 subunit B 2 gi|238065037|sp|B9KJI0|NUOB2_RHOSK RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName: Full=NADH dehydrogenase I subunit B 2; AltName: Full=NDH-1 subunit B 2 gi|77388091|gb|ABA79276.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit [Rhodobacter sphaeroides 2.4.1] gi|221160297|gb|ACM01277.1| NADH-quinone oxidoreductase, B subunit [Rhodobacter sphaeroides KD131] gi|332276241|gb|EGJ21556.1| NADH dehydrogenase subunit B [Rhodobacter sphaeroides WS8N] Length = 205 Score = 197 bits (501), Expect = 6e-49, Method: Composition-based stats. Identities = 82/163 (50%), Positives = 105/163 (64%), Gaps = 5/163 (3%) Query: 16 SCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMP 75 S ++ + DA + L T +D LV W+R SL FGL+CC VEM A P Sbjct: 2 SWTIGRPDA---EAPEDRMAASHLFTRLDDLVAWSRKHSLWPFNFGLSCCYVEMATALTP 58 Query: 76 RYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGG 134 YD RFG R++PRQ+D++IV+GT+ KMA L R+Y QM EPR+VISMG+CAN GG Sbjct: 59 VYDQARFGAEVIRSTPRQADLLIVSGTVFRKMAVPLYRLYSQMREPRWVISMGACANSGG 118 Query: 135 YYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 Y YSVV+G D +PVD+YVPGCPP EAL+ ++LLQ KI Sbjct: 119 MY-DIYSVVQGVDSFLPVDVYVPGCPPRPEALMEALVLLQSKI 160 >gi|126462505|ref|YP_001043619.1| NADH dehydrogenase subunit B [Rhodobacter sphaeroides ATCC 17029] gi|238065036|sp|A3PKI1|NUOB2_RHOS1 RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName: Full=NADH dehydrogenase I subunit B 2; AltName: Full=NDH-1 subunit B 2 gi|126104169|gb|ABN76847.1| NADH-quinone oxidoreductase, B subunit [Rhodobacter sphaeroides ATCC 17029] Length = 205 Score = 197 bits (501), Expect = 6e-49, Method: Composition-based stats. Identities = 82/163 (50%), Positives = 105/163 (64%), Gaps = 5/163 (3%) Query: 16 SCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMP 75 S ++ + DA + L T +D LV W+R SL FGL+CC VEM A P Sbjct: 2 SWTIGRPDA---EAPEDRMAASHLFTRLDDLVAWSRKHSLWPFNFGLSCCYVEMATALTP 58 Query: 76 RYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGG 134 YD RFG R++PRQ+D++IV+GT+ KMA L R+Y QM EPR+VISMG+CAN GG Sbjct: 59 VYDQARFGAEVIRSTPRQADLLIVSGTVFRKMAVPLYRLYSQMREPRWVISMGACANSGG 118 Query: 135 YYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 Y YSVV+G D +PVD+YVPGCPP EAL+ ++LLQ KI Sbjct: 119 MY-DIYSVVQGVDSFLPVDVYVPGCPPRPEALMEALVLLQSKI 160 >gi|319760615|ref|YP_004124553.1| NADH-quinone oxidoreductase, subunit B [Candidatus Blochmannia vafer str. BVAF] gi|318039329|gb|ADV33879.1| NADH-quinone oxidoreductase, subunit B [Candidatus Blochmannia vafer str. BVAF] Length = 222 Score = 197 bits (501), Expect = 7e-49, Method: Composition-based stats. Identities = 77/175 (44%), Positives = 101/175 (57%), Gaps = 2/175 (1%) Query: 4 TTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLA 63 N + V + + G L + ++V W R SL FGL+ Sbjct: 8 VRTNTNDNDQYPLQDQKLVSDPLEKCVQKSVFFGKLTAFLHKIVNWGRGNSLWPYNFGLS 67 Query: 64 CCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122 CC VEM A +D+ RFG R+SPRQSD M++AGT KM ++R+YDQM EP++ Sbjct: 68 CCYVEMTTAFTAVHDVARFGSEVLRSSPRQSDFMVIAGTPFIKMVPVIQRLYDQMLEPKW 127 Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 VISMG+CAN GG Y YSVV+G D+ +PVDIY+PGCPP EA I +LLL+K I Sbjct: 128 VISMGACANSGGMY-DIYSVVQGVDKFLPVDIYIPGCPPRPEAYIQALLLLKKSI 181 >gi|90425545|ref|YP_533915.1| NADH-quinone oxidoreductase, B subunit [Rhodopseudomonas palustris BisB18] gi|122475341|sp|Q20Z40|NUOB2_RHOPB RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName: Full=NADH dehydrogenase I subunit B 2; AltName: Full=NDH-1 subunit B 2 gi|90107559|gb|ABD89596.1| NADH-quinone oxidoreductase, B subunit [Rhodopseudomonas palustris BisB18] Length = 205 Score = 197 bits (501), Expect = 7e-49, Method: Composition-based stats. Identities = 75/163 (46%), Positives = 108/163 (66%), Gaps = 4/163 (2%) Query: 16 SCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMP 75 S +L++ D S E + L ++ LV W+R SL FGL+CC VE + A Sbjct: 2 SYTLQRPGEDIS--VEEHMARTSLFARLEDLVAWSRKNSLWPFNFGLSCCYVEQVTALTS 59 Query: 76 RYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGG 134 YD RFG RASPRQ+D+++V+GT+ +KMA+ L R+Y+QM PR+VISMG+CAN GG Sbjct: 60 VYDQARFGAEVIRASPRQADLLVVSGTVFHKMAAPLLRLYEQMRAPRWVISMGACANSGG 119 Query: 135 YYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 Y YSVV+G D +PVD+Y+PGCPP EA++ +++LQ+++ Sbjct: 120 MY-DIYSVVQGVDSFLPVDVYIPGCPPRPEAVLDALIMLQQQV 161 >gi|76811559|ref|YP_334953.1| NADH dehydrogenase subunit B [Burkholderia pseudomallei 1710b] gi|76581012|gb|ABA50487.1| NADH-quinone oxidoreductase, B subunit [Burkholderia pseudomallei 1710b] Length = 226 Score = 197 bits (500), Expect = 7e-49, Method: Composition-based stats. Identities = 104/151 (68%), Positives = 123/151 (81%) Query: 32 EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPR 91 + GF+VT++D + A+ SL +MTFGLA CAVEMM A+ RYD++RFG PRASPR Sbjct: 66 TLEKDGFIVTTLDAAMAAAQKNSLWYMTFGLARCAVEMMHAAGARYDMDRFGMIPRASPR 125 Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151 Q D+MIVAGTLTNKMA A+RRVYDQM EPRYV+SMGSCANGGGYYHY YSVVRGCDRIVP Sbjct: 126 QCDLMIVAGTLTNKMAPAMRRVYDQMAEPRYVVSMGSCANGGGYYHYGYSVVRGCDRIVP 185 Query: 152 VDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182 VD+YVPGCPPTAEAL+Y ++ LQ+K+ Sbjct: 186 VDVYVPGCPPTAEALVYDLMQLQRKVAERST 216 >gi|116747649|ref|YP_844336.1| NADH-quinone oxidoreductase subunit B [Syntrophobacter fumaroxidans MPOB] gi|116696713|gb|ABK15901.1| NADH-quinone oxidoreductase, B subunit [Syntrophobacter fumaroxidans MPOB] Length = 176 Score = 197 bits (500), Expect = 7e-49, Method: Composition-based stats. Identities = 79/156 (50%), Positives = 106/156 (67%), Gaps = 5/156 (3%) Query: 25 DFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF 84 + +R++ E F V ++ ++ AR SL MTFGLACCA+EMM A R+DL+RFG Sbjct: 3 EQNRVAPEEPAIQFAV--LEDILNLARANSLWPMTFGLACCAIEMMAAGASRFDLDRFGA 60 Query: 85 -APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS--YS 141 R SPRQSD+MIVAGT++ KM A++ ++DQMP P++ I+MG+CA GG + Y Y+ Sbjct: 61 GVFRPSPRQSDLMIVAGTISKKMGPAVQMLWDQMPNPKWCIAMGNCAISGGPFEYEGQYA 120 Query: 142 VVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 +V G IVPVDI++PGCPP EALI G L L KI Sbjct: 121 IVPGAHLIVPVDIFIPGCPPRPEALIQGFLALGDKI 156 >gi|258514491|ref|YP_003190713.1| NADH-quinone oxidoreductase, B subunit [Desulfotomaculum acetoxidans DSM 771] gi|257778196|gb|ACV62090.1| NADH-quinone oxidoreductase, B subunit [Desulfotomaculum acetoxidans DSM 771] Length = 175 Score = 197 bits (500), Expect = 8e-49, Method: Composition-based stats. Identities = 77/166 (46%), Positives = 115/166 (69%), Gaps = 4/166 (2%) Query: 14 QSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVE-MMQA 72 +S +E++ D ++ + + +++++ AR S+ M FGLACCA+E +M A Sbjct: 4 NNSHPIEELTKDPVIVNE--VRRLVQIGPLEKILNLARAHSMWPMAFGLACCAIEALMGA 61 Query: 73 SMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCAN 131 + PRYDL RFG+ R SPRQ+DVM+VAGT+T K A + R+Y+QMP+P++VI++GSCA Sbjct: 62 TGPRYDLARFGYEVLRPSPRQADVMVVAGTITRKSAPFVVRLYEQMPDPKWVIAVGSCAI 121 Query: 132 GGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 GG + SY VV G D+++PVD+YVPGCPP EA+I G ++L+ KI Sbjct: 122 SGGPFVDSYYVVPGADKLIPVDVYVPGCPPRPEAVIDGFIMLKNKI 167 >gi|251789015|ref|YP_003003736.1| NADH dehydrogenase subunit B [Dickeya zeae Ech1591] gi|247537636|gb|ACT06257.1| NADH-quinone oxidoreductase, B subunit [Dickeya zeae Ech1591] Length = 224 Score = 197 bits (500), Expect = 8e-49, Method: Composition-based stats. Identities = 75/172 (43%), Positives = 104/172 (60%), Gaps = 5/172 (2%) Query: 14 QSSCSLEKVDADFSRISSEITHKGF---LVTSVDQLVTWARTGSLMWMTFGLACCAVEMM 70 L+K + + + F L S+ +V W R+ SL FGL+CC VEM Sbjct: 14 NDRYPLQKQEIVGDPLEQHVNRSVFMGNLEQSLHSMVNWGRSNSLWPYNFGLSCCYVEMA 73 Query: 71 QASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSC 129 + +D+ RFG RASPRQ+D M+VAGT KMA ++R+YDQM P++VISMG+C Sbjct: 74 TSFTSVHDVARFGSEVIRASPRQADFMVVAGTPFLKMAPVIQRLYDQMLAPKWVISMGAC 133 Query: 130 ANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181 AN GG Y YSVV+G D+ +PVD+Y+PGCPP EA + +LLL++ I + Sbjct: 134 ANSGGMY-DIYSVVQGVDKFLPVDVYIPGCPPRPEAYMQALLLLKESIGKER 184 >gi|182412309|ref|YP_001817375.1| NADH dehydrogenase subunit B [Opitutus terrae PB90-1] gi|238065012|sp|B1ZRT2|NUOB1_OPITP RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName: Full=NADH dehydrogenase I subunit B 1; AltName: Full=NDH-1 subunit B 1 gi|177839523|gb|ACB73775.1| NADH-quinone oxidoreductase, B subunit [Opitutus terrae PB90-1] Length = 171 Score = 197 bits (500), Expect = 9e-49, Method: Composition-based stats. Identities = 76/164 (46%), Positives = 107/164 (65%), Gaps = 2/164 (1%) Query: 22 VDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLER 81 V ++ S G +V+ D ++ W RT S+ M GLACCA+E+MQ R+D+ R Sbjct: 2 VSSNTDLTYSSAIEGGIVVSKADAVINWIRTNSMWPMPMGLACCAIELMQVGNGRFDIAR 61 Query: 82 FGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSY 140 FG R SPRQSD MIVAG++T KMA +RR+YDQM P++VI+MG+CA+ GG Y SY Sbjct: 62 FGAEVMRFSPRQSDCMIVAGSVTYKMAPQIRRIYDQMMSPKWVIAMGACASSGGMYR-SY 120 Query: 141 SVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 + ++G DRI+PVD+Y+ GCPP E ++ ++ LQ KIR + Sbjct: 121 AHMQGVDRILPVDVYISGCPPRPEGILDALMKLQAKIRTERAGQ 164 >gi|238751247|ref|ZP_04612741.1| NADH-quinone oxidoreductase subunit B [Yersinia rohdei ATCC 43380] gi|238788653|ref|ZP_04632445.1| NADH-quinone oxidoreductase subunit B [Yersinia frederiksenii ATCC 33641] gi|238710521|gb|EEQ02745.1| NADH-quinone oxidoreductase subunit B [Yersinia rohdei ATCC 43380] gi|238723248|gb|EEQ14896.1| NADH-quinone oxidoreductase subunit B [Yersinia frederiksenii ATCC 33641] Length = 186 Score = 196 bits (499), Expect = 9e-49, Method: Composition-based stats. Identities = 73/146 (50%), Positives = 99/146 (67%), Gaps = 2/146 (1%) Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95 G L ++ +V W R SL FGL+CC VEM+ + +D+ RFG RASPRQ+D Sbjct: 2 GKLENAMHDMVNWGRKNSLWPYNFGLSCCYVEMVTSFTAVHDVARFGAEVLRASPRQADF 61 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155 M+VAGT KMA ++R+Y+QM EP++VISMG+CAN GG Y YSVV+G D+ +PVD+Y Sbjct: 62 MVVAGTCFTKMAPVIQRLYEQMLEPKWVISMGACANSGGMY-DIYSVVQGVDKFLPVDVY 120 Query: 156 VPGCPPTAEALIYGILLLQKKIRRVG 181 +PGCPP EA + +LLLQ+ I + Sbjct: 121 IPGCPPRPEAYMQALLLLQESIGKER 146 >gi|296124090|ref|YP_003631868.1| NADH-quinone oxidoreductase, subunit beta [Planctomyces limnophilus DSM 3776] gi|296016430|gb|ADG69669.1| NADH-quinone oxidoreductase, B subunit [Planctomyces limnophilus DSM 3776] Length = 230 Score = 196 bits (498), Expect = 1e-48, Method: Composition-based stats. Identities = 70/156 (44%), Positives = 101/156 (64%), Gaps = 2/156 (1%) Query: 30 SSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RA 88 + +T+++ +WAR SL M F ACC +E+M + R+DL RFG R Sbjct: 25 PQKGLPDNVFLTTLNAASSWARKNSLWPMPFATACCGIELMATASSRHDLARFGAEVMRF 84 Query: 89 SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 148 SPRQ D+MIVAG + KM L+R++ QMPEP++ ISMG+CA GG + +Y+VV+G DR Sbjct: 85 SPRQCDLMIVAGRVAMKMMPVLQRIWLQMPEPKWCISMGACACTGGVF-DTYAVVQGIDR 143 Query: 149 IVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 +PVD+YVPGCPP E LI GI+ +Q +++ G ++ Sbjct: 144 FIPVDLYVPGCPPRPEQLIAGIMQIQDLVQKTGTMQ 179 >gi|86748473|ref|YP_484969.1| NADH-quinone oxidoreductase, B subunit [Rhodopseudomonas palustris HaA2] gi|123408621|sp|Q2J0F2|NUOB_RHOP2 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|86571501|gb|ABD06058.1| NADH-quinone oxidoreductase, B subunit [Rhodopseudomonas palustris HaA2] Length = 208 Score = 196 bits (498), Expect = 1e-48, Method: Composition-based stats. Identities = 70/140 (50%), Positives = 101/140 (72%), Gaps = 2/140 (1%) Query: 39 LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMI 97 L T+++ L W+R SL FGL+CC VE + A P YD RFG RASPRQ+D+++ Sbjct: 26 LFTTLEDLTAWSRKHSLWPFNFGLSCCYVEQVTALTPVYDQARFGAEVIRASPRQADLLV 85 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 V+GT+ +KMA+ L R+Y+QM PR+VI+MG+CA GG Y YSVV+G DR +PVD+Y+P Sbjct: 86 VSGTVFHKMAAPLLRLYEQMRAPRWVIAMGACACSGGMY-DIYSVVQGVDRFIPVDVYIP 144 Query: 158 GCPPTAEALIYGILLLQKKI 177 GCPP EA++ +++LQ+++ Sbjct: 145 GCPPRPEAMLDALIMLQQQV 164 >gi|313679548|ref|YP_004057287.1| NADH dehydrogenase subunit b [Oceanithermus profundus DSM 14977] gi|313152263|gb|ADR36114.1| NADH dehydrogenase subunit B [Oceanithermus profundus DSM 14977] Length = 184 Score = 196 bits (498), Expect = 1e-48, Method: Composition-based stats. Identities = 71/136 (52%), Positives = 99/136 (72%) Query: 29 ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88 + S+ + ++ ++D L+ AR+ S+ +TFG+ACCA+EMM P+ D +RFG R Sbjct: 4 LGSDERPRDIILGTLDDLINMARSRSMWPLTFGIACCAIEMMATWDPKIDADRFGMFFRN 63 Query: 89 SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 148 +PRQ+DVMIV+GT+ K+A LRR+YDQM EP++VISMG+CAN GG + YSVV G D+ Sbjct: 64 TPRQADVMIVSGTVNKKLAKRLRRLYDQMAEPKWVISMGACANQGGPFRQGYSVVEGVDK 123 Query: 149 IVPVDIYVPGCPPTAE 164 IVPVD+Y+PGCPP E Sbjct: 124 IVPVDVYIPGCPPRPE 139 >gi|254670954|emb|CBA07618.1| NADH-ubiquinone oxidoreductase, 20 kDa subunit [Neisseria meningitidis alpha153] Length = 158 Score = 196 bits (498), Expect = 1e-48, Method: Composition-based stats. Identities = 93/126 (73%), Positives = 107/126 (84%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 + KGF+ TS D ++ + RTGSL +TFGLACCAVEMM A M RYDL+RFG R SPRQ Sbjct: 6 VLKKGFITTSADTVLNYMRTGSLWPVTFGLACCAVEMMHAGMARYDLDRFGIIFRPSPRQ 65 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 +D+MIVAGTLTNKMA ALRRVYDQ+ EPR+V+SMGSCANGGGYYHYSYSVVRG DR+VPV Sbjct: 66 ADLMIVAGTLTNKMAPALRRVYDQLAEPRWVLSMGSCANGGGYYHYSYSVVRGADRVVPV 125 Query: 153 DIYVPG 158 D+YVPG Sbjct: 126 DVYVPG 131 >gi|332662314|ref|YP_004445102.1| NAD(P)H-quinone oxidoreductase subunit K [Haliscomenobacter hydrossis DSM 1100] gi|332331128|gb|AEE48229.1| NAD(P)H-quinone oxidoreductase subunit K [Haliscomenobacter hydrossis DSM 1100] Length = 179 Score = 196 bits (498), Expect = 1e-48, Method: Composition-based stats. Identities = 66/154 (42%), Positives = 99/154 (64%), Gaps = 2/154 (1%) Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-P 86 T +GF TS D+ + AR S+ + F +CC +E M YDL RFG Sbjct: 7 ESPEGHTGQGFFATSFDKAIGLARANSIWPLPFATSCCGIEFMATMGAHYDLARFGSERL 66 Query: 87 RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGC 146 SPRQ+D+++V GT+ KM L++VY QM EPR+V+S+G+CA GG + +YSV++G Sbjct: 67 SFSPRQADLLMVMGTIAKKMGPVLKQVYLQMAEPRWVLSVGACACSGGIF-DTYSVLQGI 125 Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 D+++PVD+YVPGCPPT EA+I G++ +Q+ ++ Sbjct: 126 DKVIPVDVYVPGCPPTPEAIIDGVMKIQELVKNE 159 >gi|269986278|gb|EEZ92586.1| NADH-quinone oxidoreductase, B subunit [Candidatus Parvarchaeum acidiphilum ARMAN-4] Length = 172 Score = 196 bits (498), Expect = 1e-48, Method: Composition-based stats. Identities = 63/144 (43%), Positives = 95/144 (65%), Gaps = 1/144 (0%) Query: 40 VTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA-SPRQSDVMIV 98 ++ ++ W R+ SL +TFG +CCA+EMM + D +R G SPRQSD+++V Sbjct: 21 EKFINTVLNWGRSNSLWPLTFGTSCCAIEMMTFGATKVDADRLGVLFNGDSPRQSDLILV 80 Query: 99 AGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPG 158 +GT+T KMA L VY+Q+P+P+YVI++G+C GG YH SY+ + G DRI+PVD ++PG Sbjct: 81 SGTITKKMARRLLNVYEQIPDPKYVIAVGACNVSGGLYHDSYNTIEGIDRIMPVDAFIPG 140 Query: 159 CPPTAEALIYGILLLQKKIRRVGN 182 CPP E + + +LQK I+ + Sbjct: 141 CPPRPEEFLDAVRVLQKLIKENRS 164 >gi|183220687|ref|YP_001838683.1| NADH dehydrogenase subunit B [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189910788|ref|YP_001962343.1| NADH dehydrogenase subunit B [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|238065164|sp|B0SFT5|NUOB_LEPBA RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|238065165|sp|B0SP83|NUOB_LEPBP RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|167775464|gb|ABZ93765.1| NADH dehydrogenase (ubiquinone), B chain [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167779109|gb|ABZ97407.1| NADH-quinone oxidoreductase chain B [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 186 Score = 196 bits (498), Expect = 1e-48, Method: Composition-based stats. Identities = 71/153 (46%), Positives = 105/153 (68%), Gaps = 2/153 (1%) Query: 30 SSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRA 88 E+ F V ++D +V W ++ SL F ACC +E M + YD+ RFG P Sbjct: 10 PGEMFGDMFQVATLDNVVQWGQSFSLWPYPFATACCGIEYMSTACADYDIARFGAERPSF 69 Query: 89 SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 148 SPRQ+D+++V GT+T KMA LR++YDQ+ EP++VIS+G+CA+ GG +H +Y V++G DR Sbjct: 70 SPRQADMILVLGTITYKMAPVLRQIYDQLAEPKFVISVGACASSGGMFH-TYGVLQGVDR 128 Query: 149 IVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181 I+PVD+YVPGCPP EA++ ++ LQKK++ G Sbjct: 129 ILPVDVYVPGCPPRPEAILDALVKLQKKVQSQG 161 >gi|91975807|ref|YP_568466.1| NADH-quinone oxidoreductase, B subunit [Rhodopseudomonas palustris BisB5] gi|123735640|sp|Q13BH4|NUOB1_RHOPS RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName: Full=NADH dehydrogenase I subunit B 1; AltName: Full=NDH-1 subunit B 1 gi|91682263|gb|ABE38565.1| NADH-quinone oxidoreductase, B subunit [Rhodopseudomonas palustris BisB5] Length = 208 Score = 196 bits (498), Expect = 1e-48, Method: Composition-based stats. Identities = 75/162 (46%), Positives = 108/162 (66%), Gaps = 3/162 (1%) Query: 17 CSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPR 76 ++ AD + E + L T+++ L W+R SL FGL+CC VE + P Sbjct: 5 PAIPPTPADSMSV-EEHMARSNLFTTLEDLTAWSRKHSLWPFNFGLSCCYVEQVTVLTPV 63 Query: 77 YDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY 135 YD RFG RASPRQ+D+++V+GT+ +KMA+ L R+Y+QM PR+VISMG+CAN GG Sbjct: 64 YDQARFGAEVIRASPRQADLLVVSGTVFHKMAAPLLRLYEQMRAPRWVISMGACANSGGM 123 Query: 136 YHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 Y YSVV+G DR +PVD+Y+PGCPP EA++ +++LQ++I Sbjct: 124 Y-DIYSVVQGVDRFIPVDVYIPGCPPRPEAMLDALIMLQQQI 164 >gi|147744666|gb|ABQ51200.1| NADH dehydrogenase (ubiquinone) Fe-S protein 7 [Capra hircus] Length = 183 Score = 195 bits (497), Expect = 2e-48, Method: Composition-based stats. Identities = 97/146 (66%), Positives = 115/146 (78%), Gaps = 1/146 (0%) Query: 12 SGQSSCSLEKVDADFSRISSEITHKG-FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMM 70 + ++ + A + ++ + +G ++V +D L+ WAR SL MTFGLACCAVEMM Sbjct: 38 PSSTQPAVSQARAVVPKPAALPSSRGEYVVAKLDDLINWARRSSLWPMTFGLACCAVEMM 97 Query: 71 QASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCA 130 + PRYD++RFG RASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYV+SMGSCA Sbjct: 98 HMAAPRYDMDRFGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCA 157 Query: 131 NGGGYYHYSYSVVRGCDRIVPVDIYV 156 NGGGYYHYSYSVVRGCDRIVPVDIYV Sbjct: 158 NGGGYYHYSYSVVRGCDRIVPVDIYV 183 >gi|312890395|ref|ZP_07749932.1| NADH dehydrogenase subunit B [Mucilaginibacter paludis DSM 18603] gi|311297165|gb|EFQ74297.1| NADH dehydrogenase subunit B [Mucilaginibacter paludis DSM 18603] Length = 180 Score = 195 bits (497), Expect = 2e-48, Method: Composition-based stats. Identities = 70/158 (44%), Positives = 100/158 (63%), Gaps = 2/158 (1%) Query: 22 VDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLER 81 D + GF TS+D+ V AR+ SL + F +CC +E M YDL R Sbjct: 2 SDIQIVEAPPGVEGSGFFATSLDKAVGLARSYSLWPLPFATSCCGIEFMATMGSHYDLSR 61 Query: 82 FGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSY 140 FG SPRQ+D+++V GT+ KMA LR+VY QM EPR+V+++G+CA+ GG + +Y Sbjct: 62 FGAERLSFSPRQADLLMVMGTIAKKMAPVLRQVYLQMAEPRWVMAVGACASSGGIF-DTY 120 Query: 141 SVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 SV++G D I+PVD+YVPGCPP EA+I G + +QK ++ Sbjct: 121 SVLQGIDEIIPVDVYVPGCPPRPEAIIDGFMNIQKLVQ 158 >gi|302348182|ref|YP_003815820.1| NADH-quinone oxidoreductase subunit B subunit [Acidilobus saccharovorans 345-15] gi|302328594|gb|ADL18789.1| NADH-quinone oxidoreductase subunit B subunit [Acidilobus saccharovorans 345-15] Length = 210 Score = 195 bits (497), Expect = 2e-48, Method: Composition-based stats. Identities = 63/154 (40%), Positives = 102/154 (66%), Gaps = 1/154 (0%) Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87 +++++ + + ++ ++V WA SL + +CC E+ A PR+D ER+G P Sbjct: 24 EVAAQLAKESLIKGTIAKVVDWATAFSLWPVHLMTSCCGCEIGAAWGPRFDNERYGSLPW 83 Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCD 147 SPRQ++++I+ GT+T KMA +R ++QMP P++VI+MG+C+ GG ++ SY++VR Sbjct: 84 VSPRQTNLIIIEGTVTKKMACTVRITWEQMPFPKFVIAMGACSLDGGIFYNSYNIVRPW- 142 Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181 ++VPVDIY+PGCPP EA+ I+ LQK IR G Sbjct: 143 QVVPVDIYIPGCPPRPEAVARSIVELQKIIRSRG 176 >gi|115523729|ref|YP_780640.1| NADH-quinone oxidoreductase, B subunit [Rhodopseudomonas palustris BisA53] gi|122296835|sp|Q07QX4|NUOB1_RHOP5 RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName: Full=NADH dehydrogenase I subunit B 1; AltName: Full=NDH-1 subunit B 1 gi|115517676|gb|ABJ05660.1| NADH-quinone oxidoreductase, B subunit [Rhodopseudomonas palustris BisA53] Length = 205 Score = 195 bits (497), Expect = 2e-48, Method: Composition-based stats. Identities = 73/148 (49%), Positives = 103/148 (69%), Gaps = 2/148 (1%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RAS 89 E + L T ++ LV W+R SL FGL+CC VE + A P +D RFG RAS Sbjct: 15 EEQMARTSLFTRLEDLVAWSRKNSLWPFNFGLSCCYVEQVTALTPVFDQARFGAEVIRAS 74 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQ+D+++V+GT+ +KMA+ L R+Y+QM PR+VISMG+CAN GG Y YSVV+G D Sbjct: 75 PRQADLLVVSGTVFHKMAAPLLRLYEQMRAPRWVISMGACANSGGMY-DVYSVVQGVDSF 133 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKI 177 +PVD+Y+PGCPP EA++ ++LLQ+++ Sbjct: 134 LPVDVYIPGCPPRPEAVLDALILLQQQV 161 >gi|15921820|ref|NP_377489.1| NADH-ubiquinone oxidoreductase subunit K [Sulfolobus tokodaii str. 7] gi|15622607|dbj|BAB66598.1| 173aa long hypothetical NADH-ubiquinone oxidoreductase subunit K [Sulfolobus tokodaii str. 7] Length = 173 Score = 195 bits (497), Expect = 2e-48, Method: Composition-based stats. Identities = 64/163 (39%), Positives = 92/163 (56%) Query: 22 VDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLER 81 + + S + + L+ W + SL +CC E + R+D ER Sbjct: 7 LTGNLQEASKKAIQWLINRKPIKNLIDWGISFSLWPPHLTTSCCGTEFGAFAAARFDAER 66 Query: 82 FGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYS 141 FG P +S RQ++++++ GTLT KMA A + VYDQMPEP++VI+MG+C+ GG + SY+ Sbjct: 67 FGVLPFSSARQTNLLVIEGTLTRKMARAAKIVYDQMPEPKWVIAMGACSLEGGIFWNSYN 126 Query: 142 VVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 V + +PVDIY PGCP EAL I+ LQK+IR VK Sbjct: 127 TVLPSEIGIPVDIYAPGCPTRPEALARAIITLQKRIRSNQTVK 169 >gi|330830046|ref|YP_004392998.1| NADH-quinone oxidoreductase subunit B [Aeromonas veronii B565] gi|328805182|gb|AEB50381.1| NADH-quinone oxidoreductase subunit B [Aeromonas veronii B565] Length = 224 Score = 195 bits (497), Expect = 2e-48, Method: Composition-based stats. Identities = 74/181 (40%), Positives = 107/181 (59%), Gaps = 3/181 (1%) Query: 3 LTTVNQ-KIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFG 61 LT ++ + + VD ++ ++ G L + V W R SL FG Sbjct: 5 LTRIDPDAPVERYPQEQRQTVDDPLAQEATRGIMMGRLEEVLQDTVNWGRKNSLWPYNFG 64 Query: 62 LACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 ++CC VEM A +D+ RFG RASPRQ+D M++AGT KMA ++R+Y+Q+ EP Sbjct: 65 ISCCYVEMCTAFTSPHDVARFGAEVIRASPRQADFMVIAGTPFIKMAPVIQRLYEQLLEP 124 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 ++VISMG+CAN GG Y YSVV+G D+ +PVD+Y+PGCPP EA + ++LLQ I + Sbjct: 125 KWVISMGACANSGGMY-DIYSVVQGVDKFLPVDVYIPGCPPRPEAFLQALMLLQDSIGKE 183 Query: 181 G 181 Sbjct: 184 R 184 >gi|326799001|ref|YP_004316820.1| NAD(P)H-quinone oxidoreductase subunit K [Sphingobacterium sp. 21] gi|326549765|gb|ADZ78150.1| NAD(P)H-quinone oxidoreductase subunit K [Sphingobacterium sp. 21] Length = 183 Score = 195 bits (497), Expect = 2e-48, Method: Composition-based stats. Identities = 70/160 (43%), Positives = 101/160 (63%), Gaps = 2/160 (1%) Query: 22 VDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLER 81 D + +T GF T++D+ V AR SL + F +CC +E M YDL R Sbjct: 2 SDIKLAPPPPGVTGSGFFATTLDKAVGLARANSLWPLPFATSCCGIEFMATMGATYDLAR 61 Query: 82 FGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSY 140 FG P SPRQSD+++V GT+ KM L++VY QM EPR+VI++G+CA+ GG + +Y Sbjct: 62 FGAERPSFSPRQSDMLLVMGTIAKKMGPVLKQVYIQMAEPRWVIAVGACASSGGIF-DTY 120 Query: 141 SVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 SV++G D ++PVD+YVPGCPP EA++ G++ LQ +R Sbjct: 121 SVLQGIDEVIPVDVYVPGCPPRPEAILDGVMRLQDIVRNE 160 >gi|119719986|ref|YP_920481.1| NADH-quinone oxidoreductase, B subunit [Thermofilum pendens Hrk 5] gi|119525106|gb|ABL78478.1| NADH-quinone oxidoreductase, B subunit [Thermofilum pendens Hrk 5] Length = 171 Score = 195 bits (497), Expect = 2e-48, Method: Composition-based stats. Identities = 68/139 (48%), Positives = 96/139 (69%), Gaps = 1/139 (0%) Query: 41 TSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAG 100 T + L WA T SL + F +CC E S PR+D ERFGF P SPRQ+++M++ G Sbjct: 28 TPIRSLRDWAITFSLWPVHFTTSCCGAEFAATSAPRFDAERFGFLPFNSPRQTNLMVIEG 87 Query: 101 TLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCP 160 TLT KM A + VYDQMP P++VI+MG+CA GG ++ SY++VR D I+PV+ ++PGCP Sbjct: 88 TLTKKMGEAAKIVYDQMPWPKFVIAMGACAIDGGLFYNSYNIVRPKD-ILPVEYFIPGCP 146 Query: 161 PTAEALIYGILLLQKKIRR 179 P EA+ I++LQ+K+R+ Sbjct: 147 PRPEAVAQAIIMLQEKVRK 165 >gi|51892725|ref|YP_075416.1| NADH dehydrogenase I subunit B [Symbiobacterium thermophilum IAM 14863] gi|51856414|dbj|BAD40572.1| NADH dehydrogenase I subunit B [Symbiobacterium thermophilum IAM 14863] Length = 153 Score = 195 bits (497), Expect = 2e-48, Method: Composition-based stats. Identities = 73/144 (50%), Positives = 110/144 (76%), Gaps = 3/144 (2%) Query: 39 LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQ-ASMPRYDLERFGFA-PRASPRQSDVM 96 + T+VD + WA++ S+ +TFGLACCA+EMM AS PRYD+ RFG RASPRQ+D++ Sbjct: 1 MTTTVDSFLRWAQSNSIWPLTFGLACCAIEMMNLASGPRYDIARFGSEAFRASPRQADLI 60 Query: 97 IVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV 156 ++G ++NKMA ++RVY QM EP++V++ G+CA+ GG + +Y++++G D ++PVDIYV Sbjct: 61 FISGRVSNKMAPVIKRVYSQMLEPKWVVAFGACASSGGIF-DNYAIMQGVDNLLPVDIYV 119 Query: 157 PGCPPTAEALIYGILLLQKKIRRV 180 PGCPPT EA+IY + L+ +IR+ Sbjct: 120 PGCPPTPEAVIYAVQKLRDRIRKE 143 >gi|126640811|ref|YP_001083795.1| NADH dehydrogenase I chain B [Acinetobacter baumannii ATCC 17978] Length = 189 Score = 195 bits (497), Expect = 2e-48, Method: Composition-based stats. Identities = 75/144 (52%), Positives = 98/144 (68%), Gaps = 6/144 (4%) Query: 40 VTSVDQL----VTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSD 94 +T ++ + V W R SL FG +CC VE +DL RFG RASPRQ+D Sbjct: 1 MTRLEDVLHTAVNWGRKNSLWPFNFGTSCCYVEYATTLTGVHDLSRFGAEVIRASPRQAD 60 Query: 95 VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154 +MIVAGT KMA ++R+Y+QM EP++VISMG+CAN GG Y YSVV+G D+I+PVD+ Sbjct: 61 LMIVAGTCFVKMAPVIQRLYEQMLEPKWVISMGACANSGGMY-DIYSVVQGVDKIIPVDV 119 Query: 155 YVPGCPPTAEALIYGILLLQKKIR 178 YVPGCPP EALI ++LLQ +I+ Sbjct: 120 YVPGCPPRPEALIQALMLLQDQIQ 143 >gi|256425967|ref|YP_003126620.1| NADH dehydrogenase subunit B [Chitinophaga pinensis DSM 2588] gi|256040875|gb|ACU64419.1| NADH-quinone oxidoreductase, B subunit [Chitinophaga pinensis DSM 2588] Length = 187 Score = 195 bits (496), Expect = 2e-48, Method: Composition-based stats. Identities = 64/153 (41%), Positives = 101/153 (66%), Gaps = 2/153 (1%) Query: 29 ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88 + + +GF T+ DQ++ AR S+ + F +CC +E M YD+ RFG A Sbjct: 16 VPEGYSGEGFFATTFDQVIGLARKNSIWPLPFATSCCGIEFMATMASTYDMSRFGSERMA 75 Query: 89 -SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCD 147 +PRQ D+++V GT++ KMA LR+VY QM EPR+V+++G+CA+ GG + +YSV++G D Sbjct: 76 FTPRQCDLLMVMGTISKKMAPVLRQVYLQMAEPRWVVAVGACASSGGVF-DTYSVLQGID 134 Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 +++PVD+YVPGCPP EA+I G + +Q + + Sbjct: 135 QVIPVDVYVPGCPPRPEAIIDGFMRVQDLVGQE 167 >gi|171186232|ref|YP_001795151.1| NADH-quinone oxidoreductase, B subunit [Thermoproteus neutrophilus V24Sta] gi|170935444|gb|ACB40705.1| NADH-quinone oxidoreductase, B subunit [Thermoproteus neutrophilus V24Sta] Length = 182 Score = 195 bits (496), Expect = 2e-48, Method: Composition-based stats. Identities = 63/150 (42%), Positives = 94/150 (62%), Gaps = 1/150 (0%) Query: 29 ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88 +S + +++L W SL + +CC VE+ S P +D ER+G P Sbjct: 1 MSQALREFLMRKAKLEKLFKWGVRWSLWPVHLVTSCCGVEVAHTSGPGFDAERWGVLPFH 60 Query: 89 SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 148 + RQS+V++V GT+T KMA L+ VY+QMPEP+YV++MG+CA GG + SY VV+ D Sbjct: 61 TMRQSNVILVEGTITRKMARVLKMVYEQMPEPKYVLAMGACAVRGGLFWNSYHVVQ-VDT 119 Query: 149 IVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 ++PVD+Y+ GCPPT EA+I ++L KI+ Sbjct: 120 VLPVDVYIAGCPPTPEAVIRAFMMLHNKIK 149 >gi|301059635|ref|ZP_07200544.1| NADH dehydrogenase subunit B [delta proteobacterium NaphS2] gi|300446281|gb|EFK10137.1| NADH dehydrogenase subunit B [delta proteobacterium NaphS2] Length = 176 Score = 195 bits (495), Expect = 3e-48, Method: Composition-based stats. Identities = 77/137 (56%), Positives = 100/137 (72%), Gaps = 3/137 (2%) Query: 44 DQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQSDVMIVAGTL 102 ++L R SL MTFGLACCA+EMM M R+DL RFG R SPRQSD+MIVAGT+ Sbjct: 25 EKLQNVCRAMSLWPMTFGLACCAIEMMSVGMARFDLARFGAEVFRPSPRQSDLMIVAGTV 84 Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH--YSYSVVRGCDRIVPVDIYVPGCP 160 T+K+A A+ R+Y+QMP P++VI+MG+CA GG + Y+V+ G D+I+PVD+YVPGCP Sbjct: 85 THKLAPAIERLYEQMPAPKWVIAMGNCAISGGPFKFPGQYAVLEGVDKIIPVDVYVPGCP 144 Query: 161 PTAEALIYGILLLQKKI 177 EAL+ G+ LQKKI Sbjct: 145 ARPEALLEGLFELQKKI 161 >gi|24372606|ref|NP_716648.1| NADH dehydrogenase subunit B [Shewanella oneidensis MR-1] gi|81589369|sp|Q8EI30|NUOB_SHEON RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|24346631|gb|AAN54093.1|AE015546_10 NADH dehydrogenase I, B subunit [Shewanella oneidensis MR-1] Length = 224 Score = 195 bits (495), Expect = 3e-48, Method: Composition-based stats. Identities = 74/181 (40%), Positives = 107/181 (59%), Gaps = 3/181 (1%) Query: 3 LTTVNQ-KIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFG 61 LT ++ + + VD ++ ++ G L + V W R SL FG Sbjct: 5 LTRIDPDAPVERYPQEQRQTVDDPLAQEATRGIMMGRLEEVLKDTVNWGRKNSLWPYNFG 64 Query: 62 LACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 ++CC VEM A +D+ RFG RASPRQ+D M++AGT KMA ++R+Y+Q+ EP Sbjct: 65 ISCCYVEMCTAFTSPHDVARFGAEVIRASPRQADFMVIAGTPFIKMAPVIQRLYEQLLEP 124 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 ++VISMG+CAN GG Y YSVV+G D+ +PVD+Y+PGCPP EA + ++LLQ I + Sbjct: 125 KWVISMGACANSGGMY-DIYSVVQGVDKFLPVDVYIPGCPPRPEAFLQALMLLQDSIGKE 183 Query: 181 G 181 Sbjct: 184 R 184 >gi|145298722|ref|YP_001141563.1| NADH dehydrogenase subunit B [Aeromonas salmonicida subsp. salmonicida A449] gi|238065069|sp|A4SLP3|NUOB_AERS4 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|142851494|gb|ABO89815.1| NADH dehydrogenase I, B subunit [Aeromonas salmonicida subsp. salmonicida A449] Length = 224 Score = 194 bits (494), Expect = 3e-48, Method: Composition-based stats. Identities = 74/181 (40%), Positives = 107/181 (59%), Gaps = 3/181 (1%) Query: 3 LTTVNQ-KIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFG 61 LT ++ + + VD ++ ++ G L + V W R SL FG Sbjct: 5 LTRIDPDAPVERYPQEQSQTVDDPLAQDATRGIMMGRLEEVLQDTVNWGRKNSLWPYNFG 64 Query: 62 LACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 ++CC VEM A +D+ RFG RASPRQ+D M++AGT KMA ++R+Y+Q+ EP Sbjct: 65 ISCCYVEMCTAFTSPHDVARFGAEVIRASPRQADFMVIAGTPFIKMAPVIQRLYEQLLEP 124 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 ++VISMG+CAN GG Y YSVV+G D+ +PVD+Y+PGCPP EA + ++LLQ I + Sbjct: 125 KWVISMGACANSGGMY-DIYSVVQGVDKFLPVDVYIPGCPPRPEAFLQALMLLQDSIGKE 183 Query: 181 G 181 Sbjct: 184 R 184 >gi|162148253|ref|YP_001602714.1| NADH dehydrogenase subunit B [Gluconacetobacter diazotrophicus PAl 5] gi|209542893|ref|YP_002275122.1| NADH dehydrogenase subunit B [Gluconacetobacter diazotrophicus PAl 5] gi|238065010|sp|A9HN98|NUOB1_GLUDA RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName: Full=NADH dehydrogenase I subunit B 1; AltName: Full=NDH-1 subunit B 1 gi|161786830|emb|CAP56413.1| putative NADH-quinone oxidoreductase chain B [Gluconacetobacter diazotrophicus PAl 5] gi|209530570|gb|ACI50507.1| NADH-quinone oxidoreductase, B subunit [Gluconacetobacter diazotrophicus PAl 5] Length = 211 Score = 194 bits (494), Expect = 4e-48, Method: Composition-based stats. Identities = 70/163 (42%), Positives = 104/163 (63%), Gaps = 2/163 (1%) Query: 16 SCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMP 75 + E+ +E + ++ + V+W + S+ FGL+CC VEM A Sbjct: 6 TRPGEEPGTPRDATMTETVKRNLVMGRLQDFVSWGQKNSIWPFNFGLSCCYVEMATAFTS 65 Query: 76 RYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGG 134 +YD+ RFG RA+PR++D+++++GT+ KMA ++ +YDQM EPR+VISMGSCAN GG Sbjct: 66 KYDIARFGSEVLRATPREADLIVISGTVFVKMAPIVKYLYDQMLEPRWVISMGSCANSGG 125 Query: 135 YYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 Y YSVV+G D +PVD+YVPGCPP +AL+ G++LLQ + Sbjct: 126 MY-DIYSVVQGVDSFLPVDVYVPGCPPRPDALLEGLMLLQDSV 167 >gi|15897574|ref|NP_342179.1| NADH dehydrogenase subunit B (NuoB) [Sulfolobus solfataricus P2] gi|284174895|ref|ZP_06388864.1| NADH dehydrogenase subunit B (NuoB) [Sulfolobus solfataricus 98/2] gi|6015810|emb|CAB57637.1| hypothetical protein [Sulfolobus solfataricus P2] gi|13813833|gb|AAK40969.1| NADH dehydrogenase subunit B (NuoB) [Sulfolobus solfataricus P2] gi|261602337|gb|ACX91940.1| NADH-quinone oxidoreductase, B subunit [Sulfolobus solfataricus 98/2] Length = 170 Score = 194 bits (494), Expect = 4e-48, Method: Composition-based stats. Identities = 64/161 (39%), Positives = 95/161 (59%) Query: 24 ADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFG 83 + + ++ + + ++ W + SL F +CC E + R+D ER+G Sbjct: 9 GNLNEVAKKAAQWLINRKPIKSIIDWGISFSLWPPHFTTSCCGTEFGAFAAARFDAERYG 68 Query: 84 FAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVV 143 P +S RQS+++I+ GTL+ KM A R VYDQMPEP+YVI++G+C GG + SY+ V Sbjct: 69 MLPFSSARQSNILILEGTLSRKMGRAARIVYDQMPEPKYVIALGACILEGGIFWNSYNTV 128 Query: 144 RGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 D +PVD+YVPGCP EA+ +L+LQKKIR G +K Sbjct: 129 LPSDIGIPVDLYVPGCPIRPEAVARAVLMLQKKIRTQGALK 169 >gi|284039943|ref|YP_003389873.1| NADH-quinone oxidoreductase subunit beta [Spirosoma linguale DSM 74] gi|283819236|gb|ADB41074.1| NADH-quinone oxidoreductase, B subunit [Spirosoma linguale DSM 74] Length = 181 Score = 194 bits (494), Expect = 4e-48, Method: Composition-based stats. Identities = 67/159 (42%), Positives = 101/159 (63%), Gaps = 2/159 (1%) Query: 23 DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82 D + + GF TS D+++ AR SL + F +CC +E M YDL RF Sbjct: 4 DIKLAEAPASYDGPGFSATSFDKIIGLARANSLWPLPFATSCCGIEFMSTMASHYDLARF 63 Query: 83 GFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYS 141 G P SPRQ+D+++VAGT+ KM +++VY QM EPR+VI++G+CA+ GG + +YS Sbjct: 64 GSERPSFSPRQADMLLVAGTIAKKMGPIVKQVYLQMAEPRWVIAIGACASSGGIF-DTYS 122 Query: 142 VVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 V++G DRI+PVD+YVPGCPP E ++ G++ +Q+ + Sbjct: 123 VLQGIDRIIPVDVYVPGCPPRPEQILEGVMQVQELAKNE 161 >gi|254259706|ref|ZP_04950760.1| putative NADH-quinone oxidoreductase, B subunit [Burkholderia pseudomallei 1710a] gi|218528075|sp|Q3JNA0|NUOB2_BURP1 RecName: Full=Putative NADH-quinone oxidoreductase subunit B 2; AltName: Full=NADH dehydrogenase I subunit B 2; AltName: Full=NDH-1 subunit B 2 gi|254218395|gb|EET07779.1| putative NADH-quinone oxidoreductase, B subunit [Burkholderia pseudomallei 1710a] Length = 167 Score = 194 bits (494), Expect = 4e-48, Method: Composition-based stats. Identities = 104/151 (68%), Positives = 123/151 (81%) Query: 32 EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPR 91 + GF+VT++D + A+ SL +MTFGLA CAVEMM A+ RYD++RFG PRASPR Sbjct: 7 TLEKDGFIVTTLDAAMAAAQKNSLWYMTFGLARCAVEMMHAAGARYDMDRFGMIPRASPR 66 Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151 Q D+MIVAGTLTNKMA A+RRVYDQM EPRYV+SMGSCANGGGYYHY YSVVRGCDRIVP Sbjct: 67 QCDLMIVAGTLTNKMAPAMRRVYDQMAEPRYVVSMGSCANGGGYYHYGYSVVRGCDRIVP 126 Query: 152 VDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182 VD+YVPGCPPTAEAL+Y ++ LQ+K+ Sbjct: 127 VDVYVPGCPPTAEALVYDLMQLQRKVAERST 157 >gi|323698263|ref|ZP_08110175.1| NADH-quinone oxidoreductase, B subunit [Desulfovibrio sp. ND132] gi|323458195|gb|EGB14060.1| NADH-quinone oxidoreductase, B subunit [Desulfovibrio desulfuricans ND132] Length = 181 Score = 194 bits (494), Expect = 4e-48, Method: Composition-based stats. Identities = 72/141 (51%), Positives = 97/141 (68%), Gaps = 3/141 (2%) Query: 40 VTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQSDVMIV 98 + ++ R SL MTFGLACCA+EMM M R+D+ RFG R SPRQSDVMIV Sbjct: 27 MKLAQDIMNVCRAMSLWPMTFGLACCAIEMMATGMARFDMARFGAEVFRPSPRQSDVMIV 86 Query: 99 AGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY--HYSYSVVRGCDRIVPVDIYV 156 AGT+ KMA ++ R+Y+QMP P++VI+MG+CA GG + +Y+V++G D ++PVD+YV Sbjct: 87 AGTVNKKMAPSVVRLYEQMPGPKWVIAMGNCAISGGPFKIKDNYNVIQGVDTLIPVDVYV 146 Query: 157 PGCPPTAEALIYGILLLQKKI 177 PGCPP E L+ G LQ+ I Sbjct: 147 PGCPPRPEGLLEGFFELQRLI 167 >gi|227488707|ref|ZP_03919023.1| NADH dehydrogenase subunit B [Corynebacterium glucuronolyticum ATCC 51867] gi|227542294|ref|ZP_03972343.1| NADH dehydrogenase subunit B [Corynebacterium glucuronolyticum ATCC 51866] gi|227091368|gb|EEI26680.1| NADH dehydrogenase subunit B [Corynebacterium glucuronolyticum ATCC 51867] gi|227181894|gb|EEI62866.1| NADH dehydrogenase subunit B [Corynebacterium glucuronolyticum ATCC 51866] Length = 189 Score = 194 bits (493), Expect = 4e-48, Method: Composition-based stats. Identities = 74/154 (48%), Positives = 103/154 (66%), Gaps = 2/154 (1%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89 + G+L T+ + L R S+ TFGLACCA EMM + PRYD R+G RAS Sbjct: 4 EDNLKGGYLTTTTEWLFGLTREWSVWPATFGLACCAFEMMSYAGPRYDSSRWGQEVFRAS 63 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQ+D++IV+G ++ KMA +RRVYDQMP+P++VI+MG+C++ GG ++ Y++V+G D I Sbjct: 64 PRQADLLIVSGRVSQKMAPIMRRVYDQMPDPKWVIAMGACSSSGGIFNN-YAIVQGADHI 122 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 VPVD+YVPGCPP E LI L+ I + V Sbjct: 123 VPVDVYVPGCPPRPEMLIDASFKLRAIIAKQTKV 156 >gi|228930306|ref|ZP_04093311.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228982015|ref|ZP_04142308.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors [Bacillus thuringiensis Bt407] gi|229020517|ref|ZP_04177264.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors [Bacillus cereus AH1273] gi|229026735|ref|ZP_04183071.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors [Bacillus cereus AH1272] gi|229033931|ref|ZP_04188885.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors [Bacillus cereus AH1271] gi|229158859|ref|ZP_04286917.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors [Bacillus cereus ATCC 4342] gi|229164245|ref|ZP_04292178.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors [Bacillus cereus R309803] gi|229187525|ref|ZP_04314665.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors [Bacillus cereus BGSC 6E1] gi|229193551|ref|ZP_04320495.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors [Bacillus cereus ATCC 10876] gi|228589856|gb|EEK47731.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors [Bacillus cereus ATCC 10876] gi|228595892|gb|EEK53572.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors [Bacillus cereus BGSC 6E1] gi|228619185|gb|EEK76078.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors [Bacillus cereus R309803] gi|228624843|gb|EEK81612.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors [Bacillus cereus ATCC 4342] gi|228728357|gb|EEL79379.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors [Bacillus cereus AH1271] gi|228734566|gb|EEL85224.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors [Bacillus cereus AH1272] gi|228740788|gb|EEL91039.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors [Bacillus cereus AH1273] gi|228777679|gb|EEM25953.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors [Bacillus thuringiensis Bt407] gi|228829349|gb|EEM74981.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 133 Score = 194 bits (493), Expect = 6e-48, Method: Composition-based stats. Identities = 81/121 (66%), Positives = 97/121 (80%) Query: 58 MTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQM 117 MTFGLACCA+EMM YDL+RFG R SPRQSDVMIV+GT+T KMA +RR+YDQM Sbjct: 1 MTFGLACCAIEMMGVGSSHYDLDRFGSFFRTSPRQSDVMIVSGTVTKKMAPIVRRLYDQM 60 Query: 118 PEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 PEP++VI+MGSCA GG Y SY+VV+G D+IVPVD+Y+PGCPP ALIYGI L++KI Sbjct: 61 PEPKWVIAMGSCATAGGPYVNSYAVVKGVDQIVPVDVYIPGCPPNPAALIYGINKLKEKI 120 Query: 178 R 178 R Sbjct: 121 R 121 >gi|229007607|ref|ZP_04165201.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors [Bacillus mycoides Rock1-4] gi|229087789|ref|ZP_04219909.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors [Bacillus cereus Rock3-44] gi|228695517|gb|EEL48382.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors [Bacillus cereus Rock3-44] gi|228753618|gb|EEM03062.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors [Bacillus mycoides Rock1-4] Length = 133 Score = 193 bits (492), Expect = 7e-48, Method: Composition-based stats. Identities = 81/121 (66%), Positives = 97/121 (80%) Query: 58 MTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQM 117 MTFGLACCA+EMM YDL+RFG R SPRQSDVMIV+GT+T KMA +RR+YDQM Sbjct: 1 MTFGLACCAIEMMGVGSSHYDLDRFGSFFRTSPRQSDVMIVSGTVTKKMAPIVRRLYDQM 60 Query: 118 PEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 PEP++VI+MGSCA GG Y SY+VV+G D+IVPVD+Y+PGCPP ALIYGI L++KI Sbjct: 61 PEPKWVIAMGSCATAGGPYVNSYAVVKGVDQIVPVDVYIPGCPPNPAALIYGINKLKEKI 120 Query: 178 R 178 R Sbjct: 121 R 121 >gi|229064950|ref|ZP_04200248.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors [Bacillus cereus AH603] gi|229136115|ref|ZP_04264868.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors [Bacillus cereus BDRD-ST196] gi|229170007|ref|ZP_04297699.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors [Bacillus cereus AH621] gi|228613432|gb|EEK70565.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors [Bacillus cereus AH621] gi|228647274|gb|EEL03356.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors [Bacillus cereus BDRD-ST196] gi|228716251|gb|EEL67963.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors [Bacillus cereus AH603] Length = 133 Score = 193 bits (492), Expect = 7e-48, Method: Composition-based stats. Identities = 81/121 (66%), Positives = 97/121 (80%) Query: 58 MTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQM 117 MTFGLACCA+EMM YDL+RFG R SPRQSDVMIV+GT+T KMA +RR+YDQM Sbjct: 1 MTFGLACCAIEMMGVGSSHYDLDRFGSFFRTSPRQSDVMIVSGTVTKKMAPIVRRLYDQM 60 Query: 118 PEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 PEP++VI+MGSCA GG Y SY+VV+G D+IVPVD+Y+PGCPP ALIYGI L++KI Sbjct: 61 PEPKWVIAMGSCATAGGPYVNSYAVVKGVDQIVPVDVYIPGCPPNPAALIYGINKLKEKI 120 Query: 178 R 178 R Sbjct: 121 R 121 >gi|256422834|ref|YP_003123487.1| NADH-quinone oxidoreductase, B subunit [Chitinophaga pinensis DSM 2588] gi|256037742|gb|ACU61286.1| NADH-quinone oxidoreductase, B subunit [Chitinophaga pinensis DSM 2588] Length = 212 Score = 193 bits (491), Expect = 8e-48, Method: Composition-based stats. Identities = 69/151 (45%), Positives = 101/151 (66%), Gaps = 2/151 (1%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RAS 89 E + ++T+V L+ W R S+ FGL+CC VEM + +YD+ RFG R + Sbjct: 22 EEAVSRSIMLTTVQDLLAWGRKNSMWPFHFGLSCCFVEMATSITSKYDVARFGAEVIRGT 81 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PR++DVM++AGT+ KM ++R+++QM EPR+VISMGSCAN GG Y YSVV+G D+ Sbjct: 82 PREADVMVIAGTVFIKMVPIIKRLHEQMMEPRWVISMGSCANSGGMY-DIYSVVQGVDKF 140 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 +PVD+YVPGCPP +A + G++LL + + Sbjct: 141 LPVDVYVPGCPPRPDAFMQGLVLLGNSVGKE 171 >gi|70607377|ref|YP_256247.1| NADH:ubiquinone oxidoreductase, B subunit [Sulfolobus acidocaldarius DSM 639] gi|68568025|gb|AAY80954.1| NADH:ubiquinone oxidoreductase, B subunit [Sulfolobus acidocaldarius DSM 639] Length = 171 Score = 193 bits (491), Expect = 8e-48, Method: Composition-based stats. Identities = 63/157 (40%), Positives = 92/157 (58%) Query: 22 VDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLER 81 + + +S ++ + + L W + SL +CC E + R+D ER Sbjct: 7 LTGNLEEVSKKVVNWLLNRKPIKSLKDWGTSFSLWPPHLTTSCCGTEFGAFAAARFDAER 66 Query: 82 FGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYS 141 +G P +S RQ++++++ GTLT KM A + VYDQMPEP++VI+MG+CA GG + SY+ Sbjct: 67 YGVLPFSSARQTNLLVIEGTLTRKMGRAAKIVYDQMPEPKFVIAMGACALEGGIFWNSYN 126 Query: 142 VVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 V D +PVDIY PGCP EAL +LLLQK+IR Sbjct: 127 TVLPSDLGIPVDIYAPGCPTRPEALARAVLLLQKRIR 163 >gi|320161606|ref|YP_004174831.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit family protein [Anaerolinea thermophila UNI-1] gi|319995460|dbj|BAJ64231.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit family protein [Anaerolinea thermophila UNI-1] Length = 173 Score = 193 bits (491), Expect = 8e-48, Method: Composition-based stats. Identities = 59/151 (39%), Positives = 92/151 (60%), Gaps = 3/151 (1%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTF---GLACCAVEMMQASMPRYDLERFGFAPR 87 +E T + +D++ WAR S + + C +E++ PRYDLERFG Sbjct: 2 TEQTLRSPWQEVLDKVRLWARVNSPWAIHYNSGSCNGCDIEIVATLTPRYDLERFGVKLE 61 Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCD 147 SPR +DV+I G +T + L R+Y QMPEP++V+++GSC GG +H Y++ G D Sbjct: 62 GSPRHADVLICTGPVTRQSRDRLLRIYHQMPEPKFVVAVGSCGLSGGVFHGLYNIAGGID 121 Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 ++PVD+++PGCPP EA+IYG++ L + +R Sbjct: 122 EVLPVDVFIPGCPPRPEAIIYGLVQLLEGLR 152 >gi|18313693|ref|NP_560360.1| NADH-ubiquinone oxidoreductase subunit [Pyrobaculum aerophilum str. IM2] gi|18161245|gb|AAL64542.1| NADH-ubiquinone oxidoreductase subunit [Pyrobaculum aerophilum str. IM2] Length = 190 Score = 193 bits (491), Expect = 8e-48, Method: Composition-based stats. Identities = 62/138 (44%), Positives = 92/138 (66%), Gaps = 1/138 (0%) Query: 41 TSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAG 100 ++++ W SL + +CC VE+ S P +D ER+G P + RQ++V+IV G Sbjct: 13 AKLERVFKWGVRWSLWPVHLVTSCCGVEVAHTSAPGFDAERWGVLPFNTMRQTNVIIVEG 72 Query: 101 TLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCP 160 T+T KMA L++VY+QMPEP++V++MG+CA GG + SY VV+ D IVPVD+Y+ GCP Sbjct: 73 TITRKMAKVLKQVYEQMPEPKFVLAMGACAVRGGLFWNSYHVVQ-VDTIVPVDVYIAGCP 131 Query: 161 PTAEALIYGILLLQKKIR 178 PT EA+I ++L KI+ Sbjct: 132 PTPEAVIRAFIMLHNKIK 149 >gi|227827741|ref|YP_002829521.1| NADH-quinone oxidoreductase subunit beta [Sulfolobus islandicus M.14.25] gi|227830450|ref|YP_002832230.1| NADH-quinone oxidoreductase, B subunit [Sulfolobus islandicus L.S.2.15] gi|229585012|ref|YP_002843514.1| NADH-quinone oxidoreductase, B subunit [Sulfolobus islandicus M.16.27] gi|238619913|ref|YP_002914739.1| NADH-quinone oxidoreductase, B subunit [Sulfolobus islandicus M.16.4] gi|284997944|ref|YP_003419711.1| NADH-quinone oxidoreductase, B subunit [Sulfolobus islandicus L.D.8.5] gi|227456898|gb|ACP35585.1| NADH-quinone oxidoreductase, B subunit [Sulfolobus islandicus L.S.2.15] gi|227459537|gb|ACP38223.1| NADH-quinone oxidoreductase, B subunit [Sulfolobus islandicus M.14.25] gi|228020062|gb|ACP55469.1| NADH-quinone oxidoreductase, B subunit [Sulfolobus islandicus M.16.27] gi|238380983|gb|ACR42071.1| NADH-quinone oxidoreductase, B subunit [Sulfolobus islandicus M.16.4] gi|284445839|gb|ADB87341.1| NADH-quinone oxidoreductase, B subunit [Sulfolobus islandicus L.D.8.5] gi|323474809|gb|ADX85415.1| NADH-quinone oxidoreductase, B subunit [Sulfolobus islandicus REY15A] gi|323477516|gb|ADX82754.1| NADH-quinone oxidoreductase, B subunit [Sulfolobus islandicus HVE10/4] Length = 170 Score = 193 bits (491), Expect = 9e-48, Method: Composition-based stats. Identities = 62/160 (38%), Positives = 94/160 (58%) Query: 24 ADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFG 83 + + ++ + + ++ W + SL F +CC E + R+D ER+G Sbjct: 9 GNLNEVAKKAAQWLINRKPIKSIIDWGISFSLWPPHFTTSCCGTEFGAFAAARFDAERYG 68 Query: 84 FAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVV 143 P +S RQS+++I+ GTL+ KM A R VYDQMPEP++VI++G+C GG + SY+ V Sbjct: 69 MLPFSSARQSNILILEGTLSRKMGRAARIVYDQMPEPKFVIALGACILEGGIFWNSYNTV 128 Query: 144 RGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 D +PVD+YVPGCP EA+ +L+LQKKIR G + Sbjct: 129 LPSDLGIPVDLYVPGCPIRPEAVARAVLMLQKKIRTQGAL 168 >gi|229579262|ref|YP_002837660.1| NADH-quinone oxidoreductase, B subunit [Sulfolobus islandicus Y.G.57.14] gi|229581977|ref|YP_002840376.1| NADH-quinone oxidoreductase, B subunit [Sulfolobus islandicus Y.N.15.51] gi|228009976|gb|ACP45738.1| NADH-quinone oxidoreductase, B subunit [Sulfolobus islandicus Y.G.57.14] gi|228012693|gb|ACP48454.1| NADH-quinone oxidoreductase, B subunit [Sulfolobus islandicus Y.N.15.51] Length = 170 Score = 193 bits (491), Expect = 1e-47, Method: Composition-based stats. Identities = 62/160 (38%), Positives = 94/160 (58%) Query: 24 ADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFG 83 + + ++ + + ++ W + SL F +CC E + R+D ER+G Sbjct: 9 GNLNEVAKKAAQWLINRKPIKSIIDWGISFSLWPPHFTTSCCGTEFGAFAAARFDAERYG 68 Query: 84 FAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVV 143 P +S RQS+++I+ GTL+ KM A R VYDQMPEP++VI++G+C GG + SY+ V Sbjct: 69 MLPFSSARQSNILILEGTLSRKMGRAARIVYDQMPEPKFVIALGACILEGGIFWNSYNTV 128 Query: 144 RGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 D +PVD+YVPGCP EA+ +L+LQKKIR G + Sbjct: 129 LPSDLGIPVDLYVPGCPIRPEAVARAVLMLQKKIRTQGAL 168 >gi|117619274|ref|YP_856317.1| NADH dehydrogenase subunit B [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|238065068|sp|A0KJ66|NUOB_AERHH RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|117560681|gb|ABK37629.1| NADH-quinone oxidoreductase chain b [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 224 Score = 193 bits (490), Expect = 1e-47, Method: Composition-based stats. Identities = 74/181 (40%), Positives = 107/181 (59%), Gaps = 3/181 (1%) Query: 3 LTTVNQ-KIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFG 61 LT ++ + + V+ ++ +S G L + V W R SL FG Sbjct: 5 LTRIDPDAPVERYPQEQRQTVEDPLAQEASRGIMIGRLEEVLQDTVNWGRKNSLWPYNFG 64 Query: 62 LACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 ++CC VEM A +D+ RFG RASPRQ+D M++AGT KMA ++R+Y+Q+ EP Sbjct: 65 ISCCYVEMCTAFTSPHDVARFGAEVIRASPRQADFMVIAGTPFIKMAPVIQRLYEQLLEP 124 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 ++VISMG+CAN GG Y YSVV+G D+ +PVD+Y+PGCPP EA + ++LLQ I + Sbjct: 125 KWVISMGACANSGGMY-DIYSVVQGVDKFLPVDVYIPGCPPRPEAFLQALMLLQDSIGKE 183 Query: 181 G 181 Sbjct: 184 R 184 >gi|328906302|gb|EGG26077.1| NADH dehydrogenase subunit B [Propionibacterium sp. P08] Length = 185 Score = 193 bits (490), Expect = 1e-47, Method: Composition-based stats. Identities = 72/147 (48%), Positives = 107/147 (72%), Gaps = 2/147 (1%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQ 92 G ++TS++ +V W R S +T GLACCA+EM+ PR D R+G RASPRQ Sbjct: 8 VPAGIVMTSMEAIVGWLRKTSFWPLTMGLACCAIEMISYGGPRADAARWGHEVFRASPRQ 67 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 +D+MIV+G ++ KMA +R++YDQMPEP++VISMG+CA+ GG ++ Y+VV+GCD IVPV Sbjct: 68 ADLMIVSGRVSQKMAPVVRQLYDQMPEPKWVISMGACASSGGIFNN-YAVVQGCDHIVPV 126 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179 D+Y+PGCPP+ + LI + ++++I+ Sbjct: 127 DVYLPGCPPSPDMLIDAVFKIREQIQH 153 >gi|313836201|gb|EFS73915.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL037PA2] gi|314971365|gb|EFT15463.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL037PA3] Length = 188 Score = 192 bits (489), Expect = 1e-47, Method: Composition-based stats. Identities = 72/147 (48%), Positives = 107/147 (72%), Gaps = 2/147 (1%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQ 92 G ++TS++ +V W R S +T GLACCA+EM+ PR D R+G RASPRQ Sbjct: 11 VPAGIVMTSMEAIVGWLRKTSFWPLTMGLACCAIEMISYGGPRADAARWGHEVFRASPRQ 70 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 +D+MIV+G ++ KMA +R++YDQMPEP++VISMG+CA+ GG ++ Y+VV+GCD IVPV Sbjct: 71 ADLMIVSGRVSQKMAPVVRQLYDQMPEPKWVISMGACASSGGIFNN-YAVVQGCDHIVPV 129 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179 D+Y+PGCPP+ + LI + ++++I+ Sbjct: 130 DVYLPGCPPSPDMLIDAVFKIREQIQH 156 >gi|314927636|gb|EFS91467.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL044PA1] Length = 188 Score = 192 bits (489), Expect = 2e-47, Method: Composition-based stats. Identities = 72/147 (48%), Positives = 107/147 (72%), Gaps = 2/147 (1%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQ 92 G ++TS++ +V W R S +T GLACCA+EM+ PR D R+G RASPRQ Sbjct: 11 VPAGIVMTSMEAIVGWLRKTSFWPLTMGLACCAIEMISYGGPRADAARWGHEVFRASPRQ 70 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 +D+MIV+G ++ KMA +R++YDQMPEP++VISMG+CA+ GG ++ Y+VV+GCD IVPV Sbjct: 71 ADLMIVSGRVSQKMAPVVRQLYDQMPEPKWVISMGACASSGGIFNN-YAVVQGCDHIVPV 129 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179 D+Y+PGCPP+ + LI + ++++I+ Sbjct: 130 DVYLPGCPPSPDMLIDAVFKIREQIQH 156 >gi|282855273|ref|ZP_06264605.1| NADH dehydrogenase subunit B [Propionibacterium acnes J139] gi|282581861|gb|EFB87246.1| NADH dehydrogenase subunit B [Propionibacterium acnes J139] Length = 185 Score = 192 bits (489), Expect = 2e-47, Method: Composition-based stats. Identities = 72/147 (48%), Positives = 107/147 (72%), Gaps = 2/147 (1%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQ 92 G ++TS++ +V W R S +T GLACCA+EM+ PR D R+G RASPRQ Sbjct: 8 VPAGIVMTSMEAIVGWLRKTSFWPLTMGLACCAIEMISYGGPRADAARWGHEVFRASPRQ 67 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 +D+MIV+G ++ KMA +R++YDQMPEP++VISMG+CA+ GG ++ Y+VV+GCD IVPV Sbjct: 68 ADLMIVSGRVSQKMAPVVRQLYDQMPEPKWVISMGACASSGGIFNN-YAVVQGCDHIVPV 126 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179 D+Y+PGCPP+ + LI + ++++I+ Sbjct: 127 DVYLPGCPPSPDMLIDAVFKIREQIQH 153 >gi|50843385|ref|YP_056612.1| NADH dehydrogenase subunit B [Propionibacterium acnes KPA171202] gi|289425667|ref|ZP_06427439.1| NADH dehydrogenase subunit B [Propionibacterium acnes SK187] gi|289426988|ref|ZP_06428707.1| NADH dehydrogenase subunit B [Propionibacterium acnes J165] gi|295131459|ref|YP_003582122.1| NADH-ubiquinone oxidoreductase chain B [Propionibacterium acnes SK137] gi|81611154|sp|Q6A6F9|NUOB_PROAC RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|50840987|gb|AAT83654.1| NADH dehydrogenase I chain B [Propionibacterium acnes KPA171202] gi|289153968|gb|EFD02661.1| NADH dehydrogenase subunit B [Propionibacterium acnes SK187] gi|289159810|gb|EFD07995.1| NADH dehydrogenase subunit B [Propionibacterium acnes J165] gi|291376052|gb|ADD99906.1| NADH-ubiquinone oxidoreductase chain B [Propionibacterium acnes SK137] gi|332676328|gb|AEE73144.1| NADH-quinone oxidoreductase subunit B [Propionibacterium acnes 266] Length = 185 Score = 192 bits (489), Expect = 2e-47, Method: Composition-based stats. Identities = 72/147 (48%), Positives = 107/147 (72%), Gaps = 2/147 (1%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQ 92 G ++TS++ +V W R S +T GLACCA+EM+ PR D R+G RASPRQ Sbjct: 8 VPAGIVMTSMEAIVGWLRKTSFWPLTMGLACCAIEMISYGGPRADAARWGHEVFRASPRQ 67 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 +D+MIV+G ++ KMA +R++YDQMPEP++VISMG+CA+ GG ++ Y+VV+GCD IVPV Sbjct: 68 ADLMIVSGRVSQKMAPVVRQLYDQMPEPKWVISMGACASSGGIFNN-YAVVQGCDHIVPV 126 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179 D+Y+PGCPP+ + LI + ++++I+ Sbjct: 127 DVYLPGCPPSPDMLIDAVFKIREQIQH 153 >gi|314923993|gb|EFS87824.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL001PA1] gi|314965057|gb|EFT09156.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL082PA2] gi|314983077|gb|EFT27169.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL110PA3] gi|315090610|gb|EFT62586.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL110PA4] gi|315093903|gb|EFT65879.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL060PA1] gi|315104122|gb|EFT76098.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL050PA2] gi|327325785|gb|EGE67577.1| NADH dehydrogenase I, B subunit [Propionibacterium acnes HL103PA1] Length = 188 Score = 192 bits (489), Expect = 2e-47, Method: Composition-based stats. Identities = 72/147 (48%), Positives = 107/147 (72%), Gaps = 2/147 (1%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQ 92 G ++TS++ +V W R S +T GLACCA+EM+ PR D R+G RASPRQ Sbjct: 11 VPAGIVMTSMEAIVGWLRKTSFWPLTMGLACCAIEMISYGGPRADAARWGHEVFRASPRQ 70 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 +D+MIV+G ++ KMA +R++YDQMPEP++VISMG+CA+ GG ++ Y+VV+GCD IVPV Sbjct: 71 ADLMIVSGRVSQKMAPVVRQLYDQMPEPKWVISMGACASSGGIFNN-YAVVQGCDHIVPV 129 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179 D+Y+PGCPP+ + LI + ++++I+ Sbjct: 130 DVYLPGCPPSPDMLIDAVFKIREQIQH 156 >gi|297570897|ref|YP_003696671.1| NADH-quinone oxidoreductase subunit beta [Arcanobacterium haemolyticum DSM 20595] gi|296931244|gb|ADH92052.1| NADH-quinone oxidoreductase, B subunit [Arcanobacterium haemolyticum DSM 20595] Length = 185 Score = 192 bits (489), Expect = 2e-47, Method: Composition-based stats. Identities = 71/152 (46%), Positives = 101/152 (66%), Gaps = 2/152 (1%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89 E G +T+V+ L WA+ S +T GLACCA+EMM R+D R G RAS Sbjct: 4 EEKVPAGIGLTTVEALAGWAQQRSPWPVTMGLACCAIEMMSFGATRFDASRIGMEVFRAS 63 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PR +D+MIV+G +++KMA +R +YDQMP+P++VISMG+CA+ GG ++ Y++V+G D I Sbjct: 64 PRHADIMIVSGRVSHKMAPVVRNIYDQMPDPKWVISMGACASSGGVFNN-YAIVQGIDHI 122 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181 VPVDIY+PGCPP E LI + L+ + + Sbjct: 123 VPVDIYLPGCPPRPEMLINAVFELRNNVMKNR 154 >gi|313763285|gb|EFS34649.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL013PA1] gi|313773331|gb|EFS39297.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL074PA1] gi|313793607|gb|EFS41647.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL110PA1] gi|313802882|gb|EFS44095.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL110PA2] gi|313806328|gb|EFS44844.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL087PA2] gi|313810766|gb|EFS48480.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL083PA1] gi|313813675|gb|EFS51389.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL025PA1] gi|313814975|gb|EFS52689.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL059PA1] gi|313819439|gb|EFS57153.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL046PA2] gi|313821245|gb|EFS58959.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL036PA1] gi|313822300|gb|EFS60014.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL036PA2] gi|313826142|gb|EFS63856.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL063PA1] gi|313829369|gb|EFS67083.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL063PA2] gi|313831077|gb|EFS68791.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL007PA1] gi|313833207|gb|EFS70921.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL056PA1] gi|313838150|gb|EFS75864.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL086PA1] gi|314916739|gb|EFS80570.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL005PA4] gi|314919135|gb|EFS82966.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL050PA1] gi|314921215|gb|EFS85046.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL050PA3] gi|314925991|gb|EFS89822.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL036PA3] gi|314930357|gb|EFS94188.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL067PA1] gi|314956140|gb|EFT00536.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL027PA1] gi|314959673|gb|EFT03775.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL002PA1] gi|314962247|gb|EFT06348.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL002PA2] gi|314963239|gb|EFT07339.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL082PA1] gi|314969782|gb|EFT13880.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL037PA1] gi|314973939|gb|EFT18035.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL053PA1] gi|314976867|gb|EFT20962.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL045PA1] gi|314979332|gb|EFT23426.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL072PA2] gi|314984989|gb|EFT29081.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL005PA1] gi|314986337|gb|EFT30429.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL005PA2] gi|314988567|gb|EFT32658.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL005PA3] gi|315079684|gb|EFT51672.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL053PA2] gi|315081012|gb|EFT52988.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL078PA1] gi|315083925|gb|EFT55901.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL027PA2] gi|315085062|gb|EFT57038.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL002PA3] gi|315089491|gb|EFT61467.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL072PA1] gi|315097690|gb|EFT69666.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL038PA1] gi|315098103|gb|EFT70079.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL059PA2] gi|315102679|gb|EFT74655.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL046PA1] gi|315107941|gb|EFT79917.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL030PA1] gi|315108821|gb|EFT80797.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL030PA2] gi|327325710|gb|EGE67507.1| NADH dehydrogenase I, B subunit [Propionibacterium acnes HL096PA3] gi|327330842|gb|EGE72587.1| NADH dehydrogenase I, B subunit [Propionibacterium acnes HL096PA2] gi|327442865|gb|EGE89519.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL043PA2] gi|327445257|gb|EGE91911.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL043PA1] gi|327447757|gb|EGE94411.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL013PA2] gi|327451632|gb|EGE98286.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL087PA3] gi|327452285|gb|EGE98939.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL083PA2] gi|327452502|gb|EGE99156.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL092PA1] gi|328752118|gb|EGF65734.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL025PA2] gi|328755062|gb|EGF68678.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL020PA1] gi|328757010|gb|EGF70626.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL087PA1] gi|328761546|gb|EGF75064.1| NADH dehydrogenase I, B subunit [Propionibacterium acnes HL099PA1] Length = 188 Score = 192 bits (488), Expect = 2e-47, Method: Composition-based stats. Identities = 72/147 (48%), Positives = 107/147 (72%), Gaps = 2/147 (1%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQ 92 G ++TS++ +V W R S +T GLACCA+EM+ PR D R+G RASPRQ Sbjct: 11 VPAGIVMTSMEAIVGWLRKTSFWPLTMGLACCAIEMISYGGPRADAARWGHEVFRASPRQ 70 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 +D+MIV+G ++ KMA +R++YDQMPEP++VISMG+CA+ GG ++ Y+VV+GCD IVPV Sbjct: 71 ADLMIVSGRVSQKMAPVVRQLYDQMPEPKWVISMGACASSGGIFNN-YAVVQGCDHIVPV 129 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179 D+Y+PGCPP+ + LI + ++++I+ Sbjct: 130 DVYLPGCPPSPDMLIDAVFKIREQIQH 156 >gi|301058551|ref|ZP_07199556.1| NADH dehydrogenase I subunit B [delta proteobacterium NaphS2] gi|300447283|gb|EFK11043.1| NADH dehydrogenase I subunit B [delta proteobacterium NaphS2] Length = 210 Score = 192 bits (488), Expect = 2e-47, Method: Composition-based stats. Identities = 73/163 (44%), Positives = 104/163 (63%), Gaps = 2/163 (1%) Query: 16 SCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMP 75 S + + ++T + ++ W+R SL FGL+CC VEMM A Sbjct: 5 SNRPDASPRPGDGTLEQAVKSSVILTRLQDMLAWSRKHSLWPFGFGLSCCFVEMMTAITS 64 Query: 76 RYDLERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGG 134 RYD+ RFG RASPR++D++I+AGT+ KM ++R+Y+QM PR+VISMGSCAN GG Sbjct: 65 RYDISRFGAEVVRASPREADMIIIAGTMFVKMVPVVKRLYEQMMAPRWVISMGSCANSGG 124 Query: 135 YYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 + YSVV+G D+ +PVD+YVPGCPP+ A + G+ LLQ+K+ Sbjct: 125 MF-DIYSVVQGVDQFLPVDVYVPGCPPSPMAFMEGLTLLQEKV 166 >gi|327403945|ref|YP_004344783.1| NADH dehydrogenase subunit B [Fluviicola taffensis DSM 16823] gi|327319453|gb|AEA43945.1| NADH dehydrogenase subunit B [Fluviicola taffensis DSM 16823] Length = 182 Score = 192 bits (488), Expect = 2e-47, Method: Composition-based stats. Identities = 63/149 (42%), Positives = 103/149 (69%), Gaps = 2/149 (1%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA-S 89 I +GF +T +D+++ AR S+ + F +CC +E M YD+ RFG + S Sbjct: 11 ETINGEGFQLTLLDKVIGAARANSVWPLPFATSCCGIEYMGTMGSNYDVARFGMERMSFS 70 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQ+D++IVAGT++ K+A L++VY+QM EP++V+S+G+CA+ GG + +YSV++G DR+ Sbjct: 71 PRQADLLIVAGTISKKLAPILKQVYEQMAEPKWVLSVGACASSGGIF-DTYSVLQGIDRV 129 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIR 178 +PVD+YVPGCPP E +I G + + + ++ Sbjct: 130 IPVDVYVPGCPPRPEQIIEGCMNIHRLVK 158 >gi|327333123|gb|EGE74850.1| NADH dehydrogenase I, B subunit [Propionibacterium acnes HL097PA1] Length = 188 Score = 192 bits (488), Expect = 2e-47, Method: Composition-based stats. Identities = 72/147 (48%), Positives = 107/147 (72%), Gaps = 2/147 (1%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQ 92 G ++TS++ +V W R S +T GLACCA+EM+ PR D R+G RASPRQ Sbjct: 11 VPAGIVMTSMEAIVGWLRKTSFWPLTMGLACCAIEMISYGGPRADAARWGHEVFRASPRQ 70 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 +D+MIV+G ++ KMA +R++YDQMPEP++VISMG+CA+ GG ++ Y+VV+GCD IVPV Sbjct: 71 ADLMIVSGRVSQKMAPVVRQLYDQMPEPKWVISMGACASSGGIFNN-YAVVQGCDHIVPV 129 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179 D+Y+PGCPP+ + LI + ++++I+ Sbjct: 130 DVYLPGCPPSPDMLIDAVFKIREQIQH 156 >gi|325954435|ref|YP_004238095.1| NAD(P)H-quinone oxidoreductase subunit K [Weeksella virosa DSM 16922] gi|323437053|gb|ADX67517.1| NAD(P)H-quinone oxidoreductase subunit K [Weeksella virosa DSM 16922] Length = 191 Score = 192 bits (488), Expect = 2e-47, Method: Composition-based stats. Identities = 64/170 (37%), Positives = 103/170 (60%), Gaps = 2/170 (1%) Query: 10 IISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEM 69 +I + + + +GF+ + ++V AR S+ + F +CC +E Sbjct: 1 MIHNKRPVTHNTNVKVIDELPEGYQGEGFMAMQLSKVVGLARKNSIWPLPFATSCCGIEF 60 Query: 70 MQASMPRYDLERFGFAPRA-SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGS 128 M +YDL RFG A +PRQ D+++V GT++ KMA L++VY QM EPR+VI++G+ Sbjct: 61 MATMGSKYDLARFGSERLAFTPRQCDLLMVMGTISKKMAPVLKQVYIQMAEPRWVIAVGA 120 Query: 129 CANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 CA+ GG + +YSV++G D ++PVD+YVPGCPP E +I G++ +Q+ I Sbjct: 121 CASSGGIF-DTYSVLQGIDEVIPVDVYVPGCPPRPEGIIEGVMRIQELIE 169 >gi|290988470|ref|XP_002676938.1| predicted protein [Naegleria gruberi] gi|284090543|gb|EFC44194.1| predicted protein [Naegleria gruberi] Length = 131 Score = 192 bits (487), Expect = 2e-47, Method: Composition-based stats. Identities = 89/124 (71%), Positives = 100/124 (80%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 FL + L WAR GS+ +TFGLACCAVEMM AS RYDLER G R +PRQ+D MI Sbjct: 6 FLKAPLHDLFAWARVGSMWPVTFGLACCAVEMMHASASRYDLERKGIFFRPTPRQADAMI 65 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 +AGTLTNKMA ALR+V+DQM EPRY ISMGSCANGGGYYH+SY VVRG D+IVPVD+YVP Sbjct: 66 IAGTLTNKMAPALRKVWDQMAEPRYSISMGSCANGGGYYHFSYHVVRGADQIVPVDVYVP 125 Query: 158 GCPP 161 GCPP Sbjct: 126 GCPP 129 >gi|91200364|emb|CAJ73410.1| strongly similar to NADH dehydrogenase I chain B [Candidatus Kuenenia stuttgartiensis] Length = 212 Score = 192 bits (487), Expect = 2e-47, Method: Composition-based stats. Identities = 70/152 (46%), Positives = 101/152 (66%), Gaps = 2/152 (1%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RAS 89 E K ++ ++ L+ W R SL FGL+CC VEM + +YD+ RFG R + Sbjct: 22 EEAVQKTVVLCNLQNLIAWGRKNSLWPFNFGLSCCYVEMATSLTSKYDIARFGAEVIRGT 81 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PR++DVMI AGT+ KMA ++R+Y+QM EPR++ISMGSC+N GG Y YSVV+G D+ Sbjct: 82 PREADVMITAGTIFIKMAPIIKRLYEQMMEPRWIISMGSCSNSGGMY-DIYSVVQGVDKF 140 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181 +PVD+YVPGCPP +A + G+L+L+ + + Sbjct: 141 MPVDVYVPGCPPRPDAFMEGLLMLRDSVGKEK 172 >gi|124027080|ref|YP_001012400.1| NAD(P)H-quinone oxidoreductase chain K [Hyperthermus butylicus DSM 5456] gi|123977774|gb|ABM80055.1| NAD(P)H-quinone oxidoreductase chain K [Hyperthermus butylicus DSM 5456] Length = 209 Score = 192 bits (487), Expect = 3e-47, Method: Composition-based stats. Identities = 62/139 (44%), Positives = 91/139 (65%), Gaps = 1/139 (0%) Query: 41 TSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAG 100 + L+ W + SL + +CC E P+YD ER G P PR ++V++V G Sbjct: 31 KPIKSLLDWGISFSLWPVHLTTSCCGAEFAAVYDPKYDSERLGSLPFTHPRNTNVLLVEG 90 Query: 101 TLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCP 160 TLT KMA A R V++QMP P++VI+MG+CA GG ++ SY++VR ++I+PVD YVPGCP Sbjct: 91 TLTRKMARAARLVWEQMPWPKFVIAMGACAITGGIFYNSYNIVR-VNQILPVDYYVPGCP 149 Query: 161 PTAEALIYGILLLQKKIRR 179 PT EA+ ++ LQ+K+R+ Sbjct: 150 PTPEAVANALIKLQEKVRK 168 >gi|83814127|ref|YP_444539.1| NADH-quinone oxidoreductase chain b [Salinibacter ruber DSM 13855] gi|294506285|ref|YP_003570343.1| NADH-quinone oxidoreductase chain B [Salinibacter ruber M8] gi|123529616|sp|Q2S5J2|NUOB_SALRD RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|83755521|gb|ABC43634.1| NADH-quinone oxidoreductase chain b [Salinibacter ruber DSM 13855] gi|294342613|emb|CBH23391.1| NADH-quinone oxidoreductase chain B [Salinibacter ruber M8] Length = 213 Score = 191 bits (486), Expect = 3e-47, Method: Composition-based stats. Identities = 77/155 (49%), Positives = 108/155 (69%), Gaps = 2/155 (1%) Query: 30 SSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRA 88 SS +GF T VD + WAR+ SLM M GLACCA+EMM + P+YD RFG R Sbjct: 4 SSGTNGQGFFTTRVDTFLNWARSNSLMPMPMGLACCAIEMMGFAGPKYDSARFGSEAMRF 63 Query: 89 SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 148 SPRQ+D+MIVAG + KM+ A+RRV+DQM +P++ I+MG+CA+ GG H Y VV+G D Sbjct: 64 SPRQADLMIVAGWCSYKMSHAIRRVWDQMGDPKWCIAMGACASTGGM-HRCYGVVQGVDN 122 Query: 149 IVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 +PVD+Y+ GCPP E++++ ++ +Q+KIR +V Sbjct: 123 FLPVDVYISGCPPRPESVLHALMDIQEKIRNEYSV 157 >gi|300114494|ref|YP_003761069.1| NADH-quinone oxidoreductase subunit B [Nitrosococcus watsonii C-113] gi|299540431|gb|ADJ28748.1| NADH-quinone oxidoreductase, B subunit [Nitrosococcus watsonii C-113] Length = 212 Score = 191 bits (486), Expect = 4e-47, Method: Composition-based stats. Identities = 79/174 (45%), Positives = 113/174 (64%), Gaps = 6/174 (3%) Query: 9 KIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVE 68 ++ Q++ S+E+ F + + L + LV W R SL FGL+CC VE Sbjct: 4 RLSKPQTAASVEQSKGSF----EDAIRRNLLFARLQDLVAWGRKNSLWPYNFGLSCCYVE 59 Query: 69 MMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMG 127 M + +YD+ RFG RA+PR++D+M+++GT+ KMA ++R+Y+QM EPR+VISMG Sbjct: 60 MATSFTSKYDIARFGAEVIRATPREADLMVISGTVFIKMAPVIKRLYEQMMEPRWVISMG 119 Query: 128 SCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181 SCAN GG Y YSVV+G D+ +PVD+YVPGCPP +AL+ G+LLLQ+ I R Sbjct: 120 SCANSGGMY-DIYSVVQGVDKFLPVDVYVPGCPPRPDALLEGLLLLQEAIGREQ 172 >gi|295798101|emb|CAX68920.1| NADH:quinone oxidoreductase, subunit PSST/NdhK/NuoB [uncultured bacterium] Length = 155 Score = 191 bits (485), Expect = 4e-47, Method: Composition-based stats. Identities = 65/146 (44%), Positives = 99/146 (67%), Gaps = 2/146 (1%) Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APRASPRQSDV 95 ++ + V+ L+ WAR SL F ACC +E M S +DL+RFG PR SPRQ+DV Sbjct: 8 NYITSRVNDLLGWARKYSLFQYPFVTACCGMEYMSVSCAHHDLDRFGAAFPRFSPRQADV 67 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155 ++V GT+++K+A LR VYDQM +P++V++ G C GG ++ +Y+ V+G D I+PVD+Y Sbjct: 68 LLVVGTISHKLAPVLRNVYDQMCDPKWVVAFGVCTCTGG-FYDNYATVQGIDTILPVDVY 126 Query: 156 VPGCPPTAEALIYGILLLQKKIRRVG 181 +PGCPP E ++ G++ LQ+KI+ Sbjct: 127 IPGCPPRPENVLDGLMRLQEKIQNQK 152 >gi|227874585|ref|ZP_03992748.1| NADH dehydrogenase (quinone) [Mobiluncus mulieris ATCC 35243] gi|269977615|ref|ZP_06184582.1| NADH-quinone oxidoreductase subunit b [Mobiluncus mulieris 28-1] gi|306817869|ref|ZP_07451608.1| NADH-quinone oxidoreductase subunit B [Mobiluncus mulieris ATCC 35239] gi|307701323|ref|ZP_07638344.1| NADH dehydrogenase subunit B [Mobiluncus mulieris FB024-16] gi|227844794|gb|EEJ54940.1| NADH dehydrogenase (quinone) [Mobiluncus mulieris ATCC 35243] gi|269934218|gb|EEZ90785.1| NADH-quinone oxidoreductase subunit b [Mobiluncus mulieris 28-1] gi|304649348|gb|EFM46634.1| NADH-quinone oxidoreductase subunit B [Mobiluncus mulieris ATCC 35239] gi|307613484|gb|EFN92732.1| NADH dehydrogenase subunit B [Mobiluncus mulieris FB024-16] Length = 184 Score = 191 bits (485), Expect = 5e-47, Method: Composition-based stats. Identities = 74/151 (49%), Positives = 111/151 (73%), Gaps = 4/151 (2%) Query: 30 SSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRA 88 EI+ KG +D +V +AR+ S+ +T GLACCA+EMM + PR+D+ RFG RA Sbjct: 5 PPEISEKG--GKPLDTVVDFARSLSIWPVTMGLACCAIEMMATAAPRFDIARFGSEVFRA 62 Query: 89 SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 148 SPR +DVM+V+G +++KMA+ +R VYD+M +P++VISMG+CA+ GG ++ Y++V+GCD Sbjct: 63 SPRHADVMLVSGRVSHKMATIMRNVYDEMADPKWVISMGACASSGGIFNN-YAIVQGCDH 121 Query: 149 IVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179 +VPVDIY+PGCPP E L+ +L L+ I++ Sbjct: 122 VVPVDIYLPGCPPRPEMLLGALLALRDHIKK 152 >gi|307696866|gb|ADN85879.1| NADH-ubiquinone oxidoreductase subunit 10 [Nyctotherus ovalis] Length = 155 Score = 190 bits (484), Expect = 6e-47, Method: Composition-based stats. Identities = 73/128 (57%), Positives = 100/128 (78%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 FL T L++WAR G++ +TFGLACCA+EMM + RYD++RFGF R SPR D +I Sbjct: 4 FLTTRSTALISWARGGAMWPLTFGLACCAIEMMHMTASRYDMDRFGFLFRPSPRHVDFLI 63 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 ++GT+T KM+ ++R+Y Q+ +P++VISMGSCAN GG Y+YSY+VVRG D I+PVD+Y+P Sbjct: 64 ISGTVTYKMSYTVKRLYSQLLDPKWVISMGSCANTGGLYYYSYAVVRGVDNIIPVDVYIP 123 Query: 158 GCPPTAEA 165 GCPP AE+ Sbjct: 124 GCPPHAES 131 >gi|170289764|ref|YP_001736580.1| F420H2 dehydrogenase subunit [Candidatus Korarchaeum cryptofilum OPF8] gi|170173844|gb|ACB06897.1| F420H2 dehydrogenase subunit [Candidatus Korarchaeum cryptofilum OPF8] Length = 174 Score = 190 bits (484), Expect = 6e-47, Method: Composition-based stats. Identities = 65/161 (40%), Positives = 95/161 (59%), Gaps = 1/161 (0%) Query: 24 ADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFG 83 + R + + + + W SL + F ACC E ++ P+YD ER G Sbjct: 12 GNLERSARKAAAWLVNKRPIRDIRDWGIAFSLWPVHFTTACCGAEFAASAAPKYDAERLG 71 Query: 84 FAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVV 143 F P RQ +V+ + GTL+ KMA A VY+QMPEP++VI MG+CA GG + SY++V Sbjct: 72 FLPFIGIRQCNVLFIEGTLSKKMAEAAIWVYEQMPEPKFVIGMGACAIDGGIFWNSYNIV 131 Query: 144 RGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 R D I+PV++++PGCPP EA+ I++LQ+KIR+ VK Sbjct: 132 RPMD-ILPVNVFIPGCPPRPEAVAQAIIMLQRKIRKGELVK 171 >gi|312183553|gb|ADQ42346.1| NADH:ubiquinone oxidoreductase B [Methanosaeta harundinacea] Length = 190 Score = 190 bits (484), Expect = 6e-47, Method: Composition-based stats. Identities = 57/161 (35%), Positives = 100/161 (62%) Query: 24 ADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFG 83 D ++E H+ + + ++ W R SL ++ + CC VEM+ P YD +RFG Sbjct: 28 TDVWFTTTEKIHEIIDMGPIKNVLNWGRKNSLWFLMQPMGCCGVEMLVFGCPHYDCDRFG 87 Query: 84 FAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVV 143 PRA+PRQ DVMI++G +T K A++ +++++PEP++V+++G CA GG ++ SY+++ Sbjct: 88 IFPRATPRQVDVMIISGYITRKYLPAIKNLWEEIPEPKWVMAIGECAISGGPFYDSYNII 147 Query: 144 RGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 + P+D+++PGCPP E I G LQ+KI++ + + Sbjct: 148 NDTSKFFPIDVFIPGCPPRPEKFIEGFRGLQEKIKQREDKR 188 >gi|162448793|ref|YP_001611160.1| NADH dehydrogenase (ubiquinone) [Sorangium cellulosum 'So ce 56'] gi|238065021|sp|A9GUX6|NUOB1_SORC5 RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName: Full=NADH dehydrogenase I subunit B 1; AltName: Full=NDH-1 subunit B 1 gi|161159375|emb|CAN90680.1| NADH dehydrogenase (ubiquinone) [Sorangium cellulosum 'So ce 56'] Length = 194 Score = 190 bits (484), Expect = 6e-47, Method: Composition-based stats. Identities = 69/149 (46%), Positives = 104/149 (69%), Gaps = 2/149 (1%) Query: 32 EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASP 90 E + GF T VD L+ WA+ SL F ACC +E M + PR+D+ RFG PR SP Sbjct: 15 EGSEHGFATTRVDALLNWAKKYSLFQYPFVTACCGMEYMAMASPRFDMARFGAEVPRFSP 74 Query: 91 RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150 RQ+D++ V GT++ + A AL+R+Y+QM +P++V++ G+CA+ GG ++ +Y+ V G D+++ Sbjct: 75 RQADLLWVVGTISQRQAPALKRIYEQMADPKWVLAFGTCASCGG-FYDNYTTVAGIDKVI 133 Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRR 179 P D+YVPGCPP EA++ G++LLQ KI R Sbjct: 134 PCDVYVPGCPPRPEAVLDGLMLLQDKIAR 162 >gi|298530619|ref|ZP_07018021.1| NADH-quinone oxidoreductase, B subunit [Desulfonatronospira thiodismutans ASO3-1] gi|298509993|gb|EFI33897.1| NADH-quinone oxidoreductase, B subunit [Desulfonatronospira thiodismutans ASO3-1] Length = 182 Score = 190 bits (483), Expect = 7e-47, Method: Composition-based stats. Identities = 79/168 (47%), Positives = 104/168 (61%), Gaps = 8/168 (4%) Query: 13 GQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQA 72 Q + +L AD S I H V +++ R SL MTFGLACCA+EMM Sbjct: 2 AQENQTLTHAYADTSYDEPIIDH-----APVQKILNICRAMSLWPMTFGLACCAIEMMGF 56 Query: 73 SMPRYDLERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCAN 131 M R+D RFG R SPRQSD+MIVAGT+ K++ + +Y+QMP P++VI+MG+CA Sbjct: 57 GMARFDSARFGAEVFRPSPRQSDLMIVAGTVNKKLSPLVTMLYEQMPSPKWVIAMGNCAI 116 Query: 132 GGGYY--HYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 GG + Y +V G DRI+PVD+YVPGCPP E L+ G+ +QKKI Sbjct: 117 SGGPFVYKNQYGIVEGVDRIIPVDVYVPGCPPRPEGLLEGLFQVQKKI 164 >gi|332702769|ref|ZP_08422857.1| NAD(P)H-quinone oxidoreductase subunit K [Desulfovibrio africanus str. Walvis Bay] gi|332552918|gb|EGJ49962.1| NAD(P)H-quinone oxidoreductase subunit K [Desulfovibrio africanus str. Walvis Bay] Length = 179 Score = 190 bits (483), Expect = 8e-47, Method: Composition-based stats. Identities = 76/150 (50%), Positives = 103/150 (68%), Gaps = 3/150 (2%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89 ++I + Q + R SL MTFGLACCA+EMM +MPR+D RFG R S Sbjct: 12 ADIEPPLVQLPLAKQFLDVCRAMSLWPMTFGLACCAIEMMAMTMPRFDASRFGAEVFRPS 71 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY--YHYSYSVVRGCD 147 PRQSD+M+VAGT++NKMA A+ R+Y+QMP P+YVI++G+CA GG + Y +V G D Sbjct: 72 PRQSDLMLVAGTVSNKMAQAVVRLYEQMPAPKYVIAIGNCAISGGPFLFKGQYGIVEGID 131 Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 +++PVD+YVPGCPP EA + G+ LQ+KI Sbjct: 132 KLIPVDVYVPGCPPRPEAFLEGLFKLQEKI 161 >gi|239907416|ref|YP_002954157.1| NADH-quinone oxidoreductase chain B [Desulfovibrio magneticus RS-1] gi|239797282|dbj|BAH76271.1| NADH-quinone oxidoreductase chain B [Desulfovibrio magneticus RS-1] Length = 176 Score = 190 bits (483), Expect = 8e-47, Method: Composition-based stats. Identities = 73/162 (45%), Positives = 107/162 (66%), Gaps = 3/162 (1%) Query: 19 LEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78 + + + + + +V +LV R S+ MTFGLACCA+EMM M R+D Sbjct: 1 MAPQNPSLAPAVNTVDPALIAQPAVQKLVDVCRAMSIWPMTFGLACCAIEMMAVGMARFD 60 Query: 79 LERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137 + R+G R SPRQSD+MIVAGT+ KMA A+ R+Y+QMP PRYV+++G+CA GG ++ Sbjct: 61 IARYGAEVFRPSPRQSDLMIVAGTVNKKMAPAVVRLYEQMPAPRYVMALGNCAISGGPFN 120 Query: 138 --YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 Y+V++G D ++PVD+YVPGCPP EAL+ G+ +Q+K+ Sbjct: 121 IENQYNVIQGVDTLIPVDVYVPGCPPRPEALLEGLFAIQEKM 162 >gi|330508771|ref|YP_004385199.1| F420H2 dehydrogenase subunit B [Methanosaeta concilii GP-6] gi|328929579|gb|AEB69381.1| F420H2 dehydrogenase, subunit B [Methanosaeta concilii GP-6] Length = 190 Score = 190 bits (482), Expect = 9e-47, Method: Composition-based stats. Identities = 54/161 (33%), Positives = 96/161 (59%) Query: 24 ADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFG 83 + ++E H+ + + + W R S+ ++ + CC VEM YD +RFG Sbjct: 28 TEVWFTTTEKIHEIIQMGPIKNIFNWGRKNSVYFLMQPMGCCGVEMFVFGAAPYDSDRFG 87 Query: 84 FAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVV 143 PR +PRQ+DVMI++G LT K + +++ MPEP++ I++G CA GG ++ SY+++ Sbjct: 88 CIPRNTPRQTDVMIISGYLTRKYLPVFKNLWENMPEPKWCIAIGECAISGGPFYDSYNII 147 Query: 144 RGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 + P+D+Y+PGCPP E + G++ LQ+KI++ +++ Sbjct: 148 QNTGDYFPIDVYIPGCPPRPEQFLEGLMNLQEKIKQRKDLR 188 >gi|327400429|ref|YP_004341268.1| NADH-quinone oxidoreductase subunit B [Archaeoglobus veneficus SNP6] gi|327315937|gb|AEA46553.1| NADH-quinone oxidoreductase, B subunit [Archaeoglobus veneficus SNP6] Length = 362 Score = 190 bits (482), Expect = 9e-47, Method: Composition-based stats. Identities = 61/138 (44%), Positives = 81/138 (58%), Gaps = 1/138 (0%) Query: 42 SVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGT 101 + + W SL + ACC VE+ YD ER+G RQ++++IV G Sbjct: 17 PLAPIKRWGAKWSLWAVHLVTACCGVELAHTYASGYDAERWGSLNFGMMRQTNLIIVEGA 76 Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP 161 ++ KMA ALR ++QMPEP++VI MG+C GG + SY + R IVPVD Y+PGCPP Sbjct: 77 ISKKMARALRITWEQMPEPKFVIVMGACGIEGGLFWNSYHIARP-SEIVPVDYYIPGCPP 135 Query: 162 TAEALIYGILLLQKKIRR 179 T EALI I LQKKI + Sbjct: 136 TPEALIRAIRALQKKIEK 153 >gi|218886689|ref|YP_002436010.1| NADH-quinone oxidoreductase subunit beta [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|238065123|sp|B8DS03|NUOB_DESVM RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|218757643|gb|ACL08542.1| NADH-quinone oxidoreductase, B subunit [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 187 Score = 189 bits (480), Expect = 2e-46, Method: Composition-based stats. Identities = 78/141 (55%), Positives = 101/141 (71%), Gaps = 3/141 (2%) Query: 40 VTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQSDVMIV 98 V V +++ R SL MTFGLACCA+EMM M R+D+ RFG R SPRQSD+MIV Sbjct: 27 VAPVQKILDVCRAMSLWPMTFGLACCAIEMMAVGMARFDISRFGAEVFRPSPRQSDLMIV 86 Query: 99 AGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH--YSYSVVRGCDRIVPVDIYV 156 AGT+T KMA AL R+Y+QMP PRYV+++G+CA GG ++ Y++V G D +VPVD+YV Sbjct: 87 AGTVTRKMAPALVRLYEQMPAPRYVMALGNCAISGGPFNFEGQYAIVEGVDNLVPVDVYV 146 Query: 157 PGCPPTAEALIYGILLLQKKI 177 PGCPP EAL+ G+ +Q KI Sbjct: 147 PGCPPRPEALLEGLFQIQHKI 167 >gi|327311105|ref|YP_004338002.1| NADH-quinone oxidoreductase subunit B [Thermoproteus uzoniensis 768-20] gi|326947584|gb|AEA12690.1| NADH-quinone oxidoreductase subunit B [Thermoproteus uzoniensis 768-20] Length = 202 Score = 189 bits (480), Expect = 2e-46, Method: Composition-based stats. Identities = 62/137 (45%), Positives = 90/137 (65%), Gaps = 1/137 (0%) Query: 41 TSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAG 100 +D+++ W S+ + +CC VE+ S P +D ER+G P + RQ++V++V G Sbjct: 15 AKLDRIIRWGIKWSMWPVHLVTSCCGVEVAHTSAPVFDAERWGVLPFNTMRQTNVILVEG 74 Query: 101 TLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCP 160 T+T KMA L+ VY+QMPEP++VI+MG+CA GG + SY VV+ D IVPVD Y+PGCP Sbjct: 75 TITRKMAKVLKWVYEQMPEPKFVIAMGACAVRGGLFWNSYHVVQ-VDTIVPVDAYIPGCP 133 Query: 161 PTAEALIYGILLLQKKI 177 PT EA+I ++ KI Sbjct: 134 PTPEAVIRAFFMVGNKI 150 >gi|108758077|ref|YP_630950.1| NADH dehydrogenase subunit B [Myxococcus xanthus DK 1622] gi|123247854|sp|Q1D8S3|NUOB_MYXXD RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|108461957|gb|ABF87142.1| NADH dehydrogenase I, B subunit [Myxococcus xanthus DK 1622] Length = 187 Score = 188 bits (479), Expect = 2e-46, Method: Composition-based stats. Identities = 70/159 (44%), Positives = 107/159 (67%), Gaps = 4/159 (2%) Query: 22 VDADFSRISSEITHK--GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDL 79 DAD + I + + G+L + V + + WAR SL + ACC +E M + R+D+ Sbjct: 2 ADADLANIVTTRRDESMGWLQSIVSKGLGWARKYSLFTYPYATACCGMEYMSVAASRHDI 61 Query: 80 ERFGF-APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY 138 RFG PR SPRQ+D+++V GT+ K A L+RVY+QM EP++V++ G CA+ GG ++ Sbjct: 62 SRFGAEFPRFSPRQADLLMVVGTINLKQAPILKRVYEQMAEPKWVVAFGVCASSGG-FYD 120 Query: 139 SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 +Y+V++G DRI+PVD+Y+PGCPP E ++ G++LLQ KI Sbjct: 121 NYAVLQGIDRIIPVDVYIPGCPPRPEQVLDGLMLLQDKI 159 >gi|292492188|ref|YP_003527627.1| NADH-quinone oxidoreductase subunit beta [Nitrosococcus halophilus Nc4] gi|291580783|gb|ADE15240.1| NADH-quinone oxidoreductase, B subunit [Nitrosococcus halophilus Nc4] Length = 212 Score = 188 bits (479), Expect = 2e-46, Method: Composition-based stats. Identities = 76/173 (43%), Positives = 112/173 (64%), Gaps = 6/173 (3%) Query: 10 IISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEM 69 + +++ S+E+ F + + L + L+ W R S+ FGL+CC VEM Sbjct: 5 LSKPKTAASIEQSKGSF----EDAIRRNLLFARLQDLIAWGRKNSIWPFNFGLSCCYVEM 60 Query: 70 MQASMPRYDLERFGF-APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGS 128 + +YDL RFG RA+PR++D+M+++GT+ KMA ++R+Y+QM EPR+VISMGS Sbjct: 61 ATSFTSKYDLGRFGSEIIRATPREADLMVISGTVFIKMAPVIKRLYEQMMEPRWVISMGS 120 Query: 129 CANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181 CAN GG Y YSVV+G D+ +PVD+YVPGCPP +AL+ G+LLLQ+ I + Sbjct: 121 CANSGGMY-DIYSVVQGVDKFLPVDVYVPGCPPRPDALLEGLLLLQEAIGKEQ 172 >gi|315427038|dbj|BAJ48655.1| NADH dehydrogenase I subunit B [Candidatus Caldiarchaeum subterraneum] Length = 168 Score = 188 bits (478), Expect = 3e-46, Method: Composition-based stats. Identities = 73/134 (54%), Positives = 91/134 (67%), Gaps = 2/134 (1%) Query: 46 LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTN 104 L+ W R SL ACC+VE PRYD ERFG+ P S RQSDV++V GT+T+ Sbjct: 29 LLNWGRMASLFPAHITTACCSVEFAATHSPRYDPERFGWLPATGSLRQSDVLVVEGTVTS 88 Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGCDRIVPVDIYVPGCPPTA 163 KMA LR VYDQMPEP++VI+MG+CA GG Y SY+V++G D I+PVD+YVPGCPP Sbjct: 89 KMAQRLRLVYDQMPEPKWVIAMGACAISGGLYAKDSYNVIQGIDDILPVDVYVPGCPPNP 148 Query: 164 EALIYGILLLQKKI 177 ILLL++KI Sbjct: 149 STFFQAILLLREKI 162 >gi|153004158|ref|YP_001378483.1| NADH dehydrogenase subunit B [Anaeromyxobacter sp. Fw109-5] gi|238065026|sp|A7H9V3|NUOB2_ANADF RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName: Full=NADH dehydrogenase I subunit B 2; AltName: Full=NDH-1 subunit B 2 gi|152027731|gb|ABS25499.1| NADH-quinone oxidoreductase, B subunit [Anaeromyxobacter sp. Fw109-5] Length = 183 Score = 188 bits (478), Expect = 3e-46, Method: Composition-based stats. Identities = 73/144 (50%), Positives = 102/144 (70%), Gaps = 2/144 (1%) Query: 36 KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APRASPRQSD 94 +GFL V + + WAR SL F ACC +E M + RYDL+RFG PR SPRQ+D Sbjct: 19 QGFLQGLVSKGLGWARKYSLFQYPFVTACCGMEFMTVASARYDLDRFGAALPRFSPRQAD 78 Query: 95 VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154 ++IV GT+ K A LRRVY+Q+ EP++V++ G CA+ GG ++ +Y+ V+G DRIVPVD+ Sbjct: 79 LLIVVGTVNCKQAPILRRVYEQIAEPKWVVAFGVCASSGG-FYDNYATVQGIDRIVPVDV 137 Query: 155 YVPGCPPTAEALIYGILLLQKKIR 178 Y+PGCPP E ++ GI+LLQ+KI+ Sbjct: 138 YIPGCPPRPEQVLDGIMLLQQKIQ 161 >gi|126460649|ref|YP_001056927.1| NADH-quinone oxidoreductase, B subunit [Pyrobaculum calidifontis JCM 11548] gi|126250370|gb|ABO09461.1| NADH-quinone oxidoreductase, B subunit [Pyrobaculum calidifontis JCM 11548] Length = 145 Score = 188 bits (477), Expect = 4e-46, Method: Composition-based stats. Identities = 65/142 (45%), Positives = 88/142 (61%), Gaps = 1/142 (0%) Query: 36 KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDV 95 + L +VD++ W SL ACC VE A YD ERFG P S RQS++ Sbjct: 2 RTLLKKTVDKVAKWGTKWSLWPPHLVTACCGVEFGHAFGSAYDAERFGMLPMGSLRQSNI 61 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155 +++ GT+T KMA ++ VY+QMPEP+YVI+MG+CA GG ++ SY +V ++VPV Y Sbjct: 62 IVIEGTITMKMAKFVKYVYEQMPEPKYVIAMGACAIKGGVFYGSYHMV-PASKVVPVHQY 120 Query: 156 VPGCPPTAEALIYGILLLQKKI 177 V GCPPT EAL+ + LQ KI Sbjct: 121 VSGCPPTPEALLKAVKNLQDKI 142 >gi|167045512|gb|ABZ10165.1| putative NADH ubiquinone oxidoreductase, 20 Kd subunit [uncultured marine microorganism HF4000_APKG10H11] Length = 182 Score = 188 bits (477), Expect = 4e-46, Method: Composition-based stats. Identities = 64/139 (46%), Positives = 92/139 (66%) Query: 43 VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL 102 V +L+TW R SL + CC+ E + YD+ERFG A+ RQ D++I+ G + Sbjct: 34 VKKLITWGRKNSLWVVHLTTGCCSPEFAALAGAGYDMERFGPLVMAAMRQCDILIIEGQV 93 Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162 +KMA ++R YDQMP+P+YVI++G+CA GG+Y SYS+V G D+I+PVD+YVPGCPP Sbjct: 94 ADKMAEVVKRTYDQMPDPKYVIAVGNCAISGGFYWDSYSMVMGIDKIIPVDVYVPGCPPR 153 Query: 163 AEALIYGILLLQKKIRRVG 181 E I I L+Q ++ + G Sbjct: 154 PEDWIDAIRLVQTRMDKEG 172 >gi|197121690|ref|YP_002133641.1| NADH dehydrogenase subunit B [Anaeromyxobacter sp. K] gi|238065027|sp|B4UIA7|NUOB2_ANASK RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName: Full=NADH dehydrogenase I subunit B 2; AltName: Full=NDH-1 subunit B 2 gi|196171539|gb|ACG72512.1| NADH-quinone oxidoreductase, B subunit [Anaeromyxobacter sp. K] Length = 182 Score = 187 bits (476), Expect = 5e-46, Method: Composition-based stats. Identities = 70/148 (47%), Positives = 102/148 (68%), Gaps = 2/148 (1%) Query: 36 KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APRASPRQSD 94 +GFL V + + WAR SL F ACC +E M + RYD +RFG PR SPRQ+D Sbjct: 19 EGFLQGLVSKSLGWARKYSLFTYPFVTACCGMEYMTMASARYDSDRFGAAMPRFSPRQAD 78 Query: 95 VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154 +++V GT+ K A L+RVY+QM +P++V++ G CA+ GG ++ +Y+ V+G DR++PVD+ Sbjct: 79 LLMVVGTVNCKQAPILQRVYEQMADPKWVMAFGVCASSGG-FYDNYATVQGIDRVIPVDV 137 Query: 155 YVPGCPPTAEALIYGILLLQKKIRRVGN 182 YVPGCPP E ++ GI+LLQKKI+ + Sbjct: 138 YVPGCPPRPEQVLDGIMLLQKKIQNQSH 165 >gi|225847872|ref|YP_002728035.1| NADH dehydrogenase subunit B [Sulfurihydrogenibium azorense Az-Fu1] gi|225643594|gb|ACN98644.1| NADH-quinone oxidoreductase, b subunit [Sulfurihydrogenibium azorense Az-Fu1] Length = 172 Score = 187 bits (475), Expect = 6e-46, Method: Composition-based stats. Identities = 73/141 (51%), Positives = 110/141 (78%), Gaps = 1/141 (0%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93 + G ++T+V+++++W R SL ++ GLACCA+EMM + R+D +R G R SPRQS Sbjct: 5 VNSGIILTTVEEVLSWGRRNSLWPVSIGLACCAIEMMHTAASRFDTDRLGIIFRGSPRQS 64 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD 153 DV+IVAGT+ NK+A L+ +Y+QMP+P++VISMG C++GGG + +YS ++G DRI+PVD Sbjct: 65 DVLIVAGTVVNKVAPMLKLIYEQMPDPKWVISMGGCSSGGGPFP-TYSTLQGVDRIIPVD 123 Query: 154 IYVPGCPPTAEALIYGILLLQ 174 +Y+PGCPPT +AL++GI+ LQ Sbjct: 124 VYIPGCPPTPQALLWGIMELQ 144 >gi|220916486|ref|YP_002491790.1| NADH-quinone oxidoreductase, B subunit [Anaeromyxobacter dehalogenans 2CP-1] gi|238065052|sp|B8JH22|NUOB_ANAD2 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|219954340|gb|ACL64724.1| NADH-quinone oxidoreductase, B subunit [Anaeromyxobacter dehalogenans 2CP-1] Length = 182 Score = 187 bits (475), Expect = 6e-46, Method: Composition-based stats. Identities = 70/148 (47%), Positives = 102/148 (68%), Gaps = 2/148 (1%) Query: 36 KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APRASPRQSD 94 +GFL V + + WAR SL F ACC +E M + RYD +RFG PR SPRQ+D Sbjct: 19 EGFLQGLVSKSLGWARKYSLFTYPFVTACCGMEYMTMASARYDSDRFGAAMPRFSPRQAD 78 Query: 95 VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154 +++V GT+ K A L+RVY+QM +P++V++ G CA+ GG ++ +Y+ V+G DR++PVD+ Sbjct: 79 LLMVVGTVNCKQAPILQRVYEQMADPKWVMAFGVCASSGG-FYDNYATVQGIDRVIPVDV 137 Query: 155 YVPGCPPTAEALIYGILLLQKKIRRVGN 182 YVPGCPP E ++ GI+LLQKKI+ + Sbjct: 138 YVPGCPPRPEQVLDGIMLLQKKIQNQSH 165 >gi|291334203|gb|ADD93870.1| hypothetical protein [uncultured marine bacterium MedDCM-OCT-S08-C1340] Length = 118 Score = 187 bits (475), Expect = 7e-46, Method: Composition-based stats. Identities = 91/116 (78%), Positives = 99/116 (85%) Query: 69 MMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGS 128 MM A RYDL+RFG R SPRQSDVMIVAGTL NKMA ALR+VYDQM +P++VISMGS Sbjct: 1 MMHAGASRYDLDRFGMLFRPSPRQSDVMIVAGTLVNKMAPALRKVYDQMADPKWVISMGS 60 Query: 129 CANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 CANGGGYYHYSYSVVRGCDRIVPVD+YVPGCPPTAEAL+YGIL LQ KIR +K Sbjct: 61 CANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALLYGILQLQNKIRNKNRIK 116 >gi|224373442|ref|YP_002607814.1| NADH-ubiquinone oxidoreductase 20 kda subunit [Nautilia profundicola AmH] gi|223588944|gb|ACM92680.1| NADH-ubiquinone oxidoreductase 20 kda subunit [Nautilia profundicola AmH] Length = 157 Score = 187 bits (474), Expect = 8e-46, Method: Composition-based stats. Identities = 61/138 (44%), Positives = 92/138 (66%) Query: 42 SVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGT 101 V +AR+ S + F CC++EM+ A PRYD ER+G+ +PRQ+D+M + G Sbjct: 3 KVLDFFNYARSKSPWIVHFCSGCCSLEMLAAMGPRYDWERYGYIMTPTPRQADIMFITGL 62 Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP 161 ++ K+ AL R Y+QMPEPRYV+++G+CA GG Y+ S SV++ I+P D++V GCPP Sbjct: 63 VSKKILPALLRTYEQMPEPRYVVAIGACAYDGGPYNDSVSVIKNMTEILPADVFVAGCPP 122 Query: 162 TAEALIYGILLLQKKIRR 179 EA+I G+ L++KI+R Sbjct: 123 RPEAIIAGLEELKEKIKR 140 >gi|300775173|ref|ZP_07085035.1| NADH-quinone oxidoreductase subunit B [Chryseobacterium gleum ATCC 35910] gi|300505913|gb|EFK37049.1| NADH-quinone oxidoreductase subunit B [Chryseobacterium gleum ATCC 35910] Length = 186 Score = 187 bits (474), Expect = 9e-46, Method: Composition-based stats. Identities = 63/151 (41%), Positives = 97/151 (64%), Gaps = 7/151 (4%) Query: 36 KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQSD 94 +GF T + ++ AR SL + F +CC +E M P YD RFG SPRQ+D Sbjct: 21 EGFFATKLSSVIGMARKFSLWPLPFATSCCGIEFMATLNPTYDASRFGMERNSFSPRQAD 80 Query: 95 VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154 +++V GT++ K+ L+ VY QM EP++V+++G+CA+ GG + +YSV++G D+I+PVD+ Sbjct: 81 MLMVCGTISKKLGPVLKEVYTQMAEPKWVVAVGACASSGGIF-DTYSVLQGIDKIIPVDV 139 Query: 155 YVPGCPPTAEALIYGILLLQ-----KKIRRV 180 YVPGCPP E +I G++ +Q + IRR Sbjct: 140 YVPGCPPRPEQIIEGVMQVQALAESESIRRR 170 >gi|313206215|ref|YP_004045392.1| NADH dehydrogenase subunit b [Riemerella anatipestifer DSM 15868] gi|312445531|gb|ADQ81886.1| NADH dehydrogenase subunit B [Riemerella anatipestifer DSM 15868] gi|315023100|gb|EFT36113.1| NADH dehydrogenase subunit B [Riemerella anatipestifer RA-YM] gi|325336338|gb|ADZ12612.1| NADH:ubiquinone oxidoreductase 20 kD subunit related Fe-S oxidoreductases [Riemerella anatipestifer RA-GD] Length = 184 Score = 186 bits (473), Expect = 1e-45, Method: Composition-based stats. Identities = 63/142 (44%), Positives = 99/142 (69%), Gaps = 2/142 (1%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA-SPRQ 92 + +GF T + L+ AR+ SL + F +CC +E M +MP YD+ RFG + SPRQ Sbjct: 18 SGEGFFATKLSSLIGMARSYSLWPLPFATSCCGIEFMAMAMPTYDMARFGAERMSFSPRQ 77 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 +D ++V GT++ K+A L++VY QM EP++VI++G+CA+ GG + +YSV++G D+I+PV Sbjct: 78 ADCLLVCGTISKKLAPVLKQVYSQMAEPKWVIAVGACASSGGIF-DTYSVLQGIDKIIPV 136 Query: 153 DIYVPGCPPTAEALIYGILLLQ 174 D+YVPGCPP E ++ G + +Q Sbjct: 137 DVYVPGCPPRPEQILEGFMQVQ 158 >gi|298346119|ref|YP_003718806.1| NADH dehydrogenase [Mobiluncus curtisii ATCC 43063] gi|304390121|ref|ZP_07372075.1| NADH-quinone oxidoreductase subunit B [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|315654698|ref|ZP_07907604.1| NADH-quinone oxidoreductase subunit B [Mobiluncus curtisii ATCC 51333] gi|315657378|ref|ZP_07910260.1| NADH-quinone oxidoreductase subunit B [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|298236180|gb|ADI67312.1| NADH dehydrogenase (quinone) [Mobiluncus curtisii ATCC 43063] gi|304326603|gb|EFL93847.1| NADH-quinone oxidoreductase subunit B [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|315491162|gb|EFU80781.1| NADH-quinone oxidoreductase subunit B [Mobiluncus curtisii ATCC 51333] gi|315491850|gb|EFU81459.1| NADH-quinone oxidoreductase subunit B [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 181 Score = 186 bits (473), Expect = 1e-45, Method: Composition-based stats. Identities = 66/137 (48%), Positives = 104/137 (75%), Gaps = 2/137 (1%) Query: 44 DQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQSDVMIVAGTL 102 +++ +AR+ S+ +T GLACCA+EMM + R+D+ RFG R+SPR +DVM+V+G + Sbjct: 14 EKITDFARSLSIWPVTMGLACCAIEMMATAASRFDIARFGSEVFRSSPRHADVMLVSGRV 73 Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162 ++KMA+ +R VYD+M +P++VISMG+CA+ GG ++ Y++V+GCD +VPVDIY+PGCPP Sbjct: 74 SHKMATIMRNVYDEMADPKWVISMGACASSGGVFNN-YAIVQGCDHVVPVDIYLPGCPPR 132 Query: 163 AEALIYGILLLQKKIRR 179 E L+ +L L+ I++ Sbjct: 133 PEMLLGALLSLRDHIKQ 149 >gi|145592467|ref|YP_001154469.1| NADH-quinone oxidoreductase, B subunit [Pyrobaculum arsenaticum DSM 13514] gi|145284235|gb|ABP51817.1| NADH-quinone oxidoreductase, B subunit [Pyrobaculum arsenaticum DSM 13514] Length = 144 Score = 186 bits (473), Expect = 1e-45, Method: Composition-based stats. Identities = 66/139 (47%), Positives = 89/139 (64%), Gaps = 1/139 (0%) Query: 39 LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIV 98 ++ VD+L W SL ACC VE A YD ERFG P S RQS+++++ Sbjct: 4 ILKVVDRLRRWGTKWSLWPPHLVTACCGVEFGHAFGSAYDAERFGMLPMGSLRQSNIIVI 63 Query: 99 AGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPG 158 GT+T KMA ++ VY+QMPEP+YVI+MG+CA GG ++ SY +V ++VPVD YV G Sbjct: 64 EGTITLKMAKFVKYVYEQMPEPKYVIAMGACAIKGGVFYGSYHMV-PAPKVVPVDGYVSG 122 Query: 159 CPPTAEALIYGILLLQKKI 177 CPPT EAL+ + LQ+KI Sbjct: 123 CPPTPEALLKAVKELQEKI 141 >gi|86158991|ref|YP_465776.1| NADH dehydrogenase subunit B [Anaeromyxobacter dehalogenans 2CP-C] gi|123498617|sp|Q2IL12|NUOB1_ANADE RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName: Full=NADH dehydrogenase I subunit B 1; AltName: Full=NDH-1 subunit B 1 gi|85775502|gb|ABC82339.1| NADH dehydrogenase subunit B [Anaeromyxobacter dehalogenans 2CP-C] Length = 182 Score = 186 bits (473), Expect = 1e-45, Method: Composition-based stats. Identities = 70/148 (47%), Positives = 102/148 (68%), Gaps = 2/148 (1%) Query: 36 KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APRASPRQSD 94 +GFL V + + WAR SL F ACC +E M + RYD +RFG PR SPRQ+D Sbjct: 19 EGFLQGLVSKSLGWARKYSLFTYPFVTACCGMEYMTMASARYDSDRFGAAMPRFSPRQAD 78 Query: 95 VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154 +++V GT+ K A L+R+Y+QM +P++V++ G CA+ GG ++ +Y+ V+G DRI+PVD+ Sbjct: 79 LLMVVGTVNCKQAPILQRIYEQMADPKWVMAFGVCASSGG-FYDNYATVQGIDRIIPVDV 137 Query: 155 YVPGCPPTAEALIYGILLLQKKIRRVGN 182 YVPGCPP E ++ GI+LLQKKI+ + Sbjct: 138 YVPGCPPRPEQVLDGIMLLQKKIQNQSH 165 >gi|226227808|ref|YP_002761914.1| NADH-quinone oxidoreductase chain B [Gemmatimonas aurantiaca T-27] gi|226090999|dbj|BAH39444.1| NADH-quinone oxidoreductase chain B [Gemmatimonas aurantiaca T-27] Length = 171 Score = 186 bits (472), Expect = 1e-45, Method: Composition-based stats. Identities = 73/141 (51%), Positives = 98/141 (69%), Gaps = 2/141 (1%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APRASPRQSDVM 96 +L T D+LV WAR SL F ACCA+E M S YD +RFG PR SPRQ+D++ Sbjct: 20 YLTTRKDELVGWARKFSLFPYPFVTACCAMEFMAVSASAYDTDRFGAALPRFSPRQADLL 79 Query: 97 IVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV 156 +V GT+T K A L +VY+QM EP++V++ G CA+ GG ++ +Y+ + G DRI+PVDIYV Sbjct: 80 MVVGTVTQKQAPILLKVYEQMCEPKWVMAFGVCASTGG-FYQNYASLPGIDRIIPVDIYV 138 Query: 157 PGCPPTAEALIYGILLLQKKI 177 PGCPP E +I GI+ LQ+KI Sbjct: 139 PGCPPRPEMVIDGIMRLQEKI 159 >gi|153948912|ref|YP_001400434.1| NADH dehydrogenase subunit B [Yersinia pseudotuberculosis IP 31758] gi|238065223|sp|A7FGQ6|NUOB_YERP3 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|152960407|gb|ABS47868.1| NADH-quinone oxidoreductase, B subunit [Yersinia pseudotuberculosis IP 31758] Length = 227 Score = 186 bits (472), Expect = 1e-45, Method: Composition-based stats. Identities = 68/134 (50%), Positives = 91/134 (67%), Gaps = 2/134 (1%) Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95 G L ++ +V W R SL FGL+CC VEM+ + +D+ RFG RASPRQ+D Sbjct: 41 GKLENAMHDMVNWGRKNSLWPYNFGLSCCYVEMVTSFTAVHDVARFGAEVLRASPRQADF 100 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155 M+VAGT KMA ++R+Y+QM EP++VISMG+CAN GG Y YSVV+G D+ +PVD+Y Sbjct: 101 MVVAGTCFTKMAPVIQRLYEQMLEPKWVISMGACANSGGMY-DIYSVVQGVDKFLPVDVY 159 Query: 156 VPGCPPTAEALIYG 169 +PGCPP EA + Sbjct: 160 IPGCPPRPEAYMQA 173 >gi|257437224|gb|ACV53599.1| NADH ubiqionone oxidoreductase chain B [Agrobacterium sp. ATCC 31749] Length = 121 Score = 186 bits (472), Expect = 1e-45, Method: Composition-based stats. Identities = 108/121 (89%), Positives = 115/121 (95%), Gaps = 1/121 (0%) Query: 40 VTSVDQLVTWARTGSLMWMTFGLACCAVE-MMQASMPRYDLERFGFAPRASPRQSDVMIV 98 VTS D+L+TWARTGSLMWM FGLACCAVE +MQAS PRYD+ERFG APRASPRQSDVMIV Sbjct: 1 VTSTDELITWARTGSLMWMQFGLACCAVEGLMQASGPRYDMERFGVAPRASPRQSDVMIV 60 Query: 99 AGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPG 158 AGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSY+VVRGCDR+VPVDIYVPG Sbjct: 61 AGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYAVVRGCDRVVPVDIYVPG 120 Query: 159 C 159 C Sbjct: 121 C 121 >gi|255318317|ref|ZP_05359552.1| NADH-quinone oxidoreductase, B subunit [Acinetobacter radioresistens SK82] gi|262379061|ref|ZP_06072217.1| trifunctional NADH dehydrogenase I subunit B/C/D [Acinetobacter radioresistens SH164] gi|255304629|gb|EET83811.1| NADH-quinone oxidoreductase, B subunit [Acinetobacter radioresistens SK82] gi|262298518|gb|EEY86431.1| trifunctional NADH dehydrogenase I subunit B/C/D [Acinetobacter radioresistens SH164] Length = 225 Score = 185 bits (471), Expect = 2e-45, Method: Composition-based stats. Identities = 70/158 (44%), Positives = 96/158 (60%), Gaps = 7/158 (4%) Query: 12 SGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQL----VTWARTGSLMWMTFGLACCAV 67 L++ + SE+ +K +T ++ + V W R S+ FG +CC V Sbjct: 10 PDAEQYPLQERQIVTDPLESEV-NKNVFMTRLEDVLHTAVNWGRKNSIWPFNFGTSCCYV 68 Query: 68 EMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISM 126 E +D+ RFG RASPRQ+D+MIVAGT KMA ++R+Y+QM EP++VISM Sbjct: 69 EYATTLTGVHDMSRFGAEVIRASPRQADLMIVAGTCFTKMAPVIQRLYEQMLEPKWVISM 128 Query: 127 GSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164 G+CAN GG Y YSVV+G D+I+PVD+YVPGCPP E Sbjct: 129 GACANSGGMY-DIYSVVQGVDKIIPVDVYVPGCPPRPE 165 >gi|164662629|ref|XP_001732436.1| hypothetical protein MGL_0211 [Malassezia globosa CBS 7966] gi|159106339|gb|EDP45222.1| hypothetical protein MGL_0211 [Malassezia globosa CBS 7966] Length = 120 Score = 185 bits (471), Expect = 2e-45, Method: Composition-based stats. Identities = 92/112 (82%), Positives = 101/112 (90%) Query: 70 MQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSC 129 M AS PRYD +R G RA+PRQSD+MIVAGTLTNKMA ALR+VYDQMPEPR+VISMGSC Sbjct: 1 MHASGPRYDQDRLGIVFRATPRQSDIMIVAGTLTNKMAPALRKVYDQMPEPRWVISMGSC 60 Query: 130 ANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181 ANGGGYYHYSYSVVRGCDRIVPVD+YVPGCPP+AEAL+YGIL LQ+KIRR Sbjct: 61 ANGGGYYHYSYSVVRGCDRIVPVDLYVPGCPPSAEALLYGILQLQRKIRRSR 112 >gi|239904914|ref|YP_002951652.1| Ech hydrogenase subunit EchC [Desulfovibrio magneticus RS-1] gi|239794777|dbj|BAH73766.1| Ech hydrogenase subunit EchC [Desulfovibrio magneticus RS-1] Length = 147 Score = 185 bits (470), Expect = 3e-45, Method: Composition-based stats. Identities = 51/138 (36%), Positives = 84/138 (60%), Gaps = 3/138 (2%) Query: 45 QLVTWARTGSLMWMTF---GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGT 101 L+ R S + F C +E++ P YD+ERFG +P+ +DV++V GT Sbjct: 4 NLINQGRIKSPWVVHFDCGSCNGCDIEVLACLTPLYDIERFGILNIGNPKHADVLLVTGT 63 Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP 161 + + L+ +YDQMP P+ VI++G+C GG + +Y+VV G D+++PVD+YVPGCP Sbjct: 64 VNQRNKHVLKNIYDQMPTPKAVIAIGACGCSGGVFREAYNVVGGVDKVIPVDVYVPGCPA 123 Query: 162 TAEALIYGILLLQKKIRR 179 EA+I G++ +K+++ Sbjct: 124 RPEAIIDGVVAALEKVKK 141 >gi|118431453|ref|NP_147936.2| NuoB-like protein [Aeropyrum pernix K1] gi|116062777|dbj|BAA80425.2| NuoB homolog [Aeropyrum pernix K1] Length = 199 Score = 185 bits (469), Expect = 3e-45, Method: Composition-based stats. Identities = 58/137 (42%), Positives = 92/137 (67%), Gaps = 1/137 (0%) Query: 42 SVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGT 101 +D++V WA + SL + +CC+ E PR D E+FG P PRQ++++I+ GT Sbjct: 30 PLDKMVDWATSFSLWPVHLTTSCCSTEFAATFAPRIDGEQFGALPWVGPRQTNLIIIEGT 89 Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP 161 +T KMA A+R ++QMP P++ I+MG+CA GG ++ SY++V+ +++P+DIY+PGCPP Sbjct: 90 VTKKMACAVRLTWEQMPHPKFAIAMGACALDGGLFYNSYNIVKPW-QVLPIDIYIPGCPP 148 Query: 162 TAEALIYGILLLQKKIR 178 E + I+ LQ+KIR Sbjct: 149 RPEGVARAIVELQRKIR 165 >gi|297625729|ref|YP_003687492.1| NADH-quinone oxidoreductase chain B [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296921494|emb|CBL56048.1| NADH-quinone oxidoreductase chain B [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 185 Score = 185 bits (469), Expect = 3e-45, Method: Composition-based stats. Identities = 70/152 (46%), Positives = 102/152 (67%), Gaps = 3/152 (1%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APRAS 89 E G +T+V+Q+ W R S +T GLACCA+EM+ PR D R+G RAS Sbjct: 4 EEKLPAGIFLTTVEQVQGWMRQASFWPLTMGLACCAIEMISYGGPRADCSRWGQEIFRAS 63 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 PRQ+D+MIVAG + K+A +R+++DQMP P++ I+MG+CA+ GG ++ Y+VV+G D I Sbjct: 64 PRQADLMIVAGRVGQKLAPVVRQLWDQMPNPKWCIAMGACASSGGVFNN-YAVVQGVDHI 122 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQK-KIRRV 180 VPVD+Y+PGCPP + LI + L+K K++ Sbjct: 123 VPVDMYLPGCPPRPDMLIDAVFKLKKGKVQHT 154 >gi|255535796|ref|YP_003096167.1| NADH dehydrogenase subunit B [Flavobacteriaceae bacterium 3519-10] gi|255341992|gb|ACU08105.1| NADH-ubiquinone oxidoreductase chain B [Flavobacteriaceae bacterium 3519-10] Length = 185 Score = 185 bits (469), Expect = 3e-45, Method: Composition-based stats. Identities = 64/160 (40%), Positives = 99/160 (61%), Gaps = 7/160 (4%) Query: 27 SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA- 85 + +GF T + ++ AR SL + F +CC +E M P YD RFG Sbjct: 12 AEPPEGFEGEGFFATKLSSVIGMARKYSLWPLPFATSCCGIEFMAVLNPTYDASRFGMER 71 Query: 86 PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRG 145 SPRQ+D+++V GT++ K+ L++VY QM EPR+V+++G+CA+ GG + +YSV++G Sbjct: 72 NSFSPRQADMLMVCGTISKKLGPVLKQVYTQMAEPRWVVAVGACASSGGIF-DTYSVLQG 130 Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQ-----KKIRRV 180 D+I+PVD+YVPGCPP E +I G++ +Q + IRR Sbjct: 131 IDKIIPVDVYVPGCPPRPEQIIEGVMQVQALCEGESIRRR 170 >gi|159041010|ref|YP_001540262.1| NADH-quinone oxidoreductase, B subunit [Caldivirga maquilingensis IC-167] gi|157919845|gb|ABW01272.1| NADH-quinone oxidoreductase, B subunit [Caldivirga maquilingensis IC-167] Length = 374 Score = 184 bits (468), Expect = 4e-45, Method: Composition-based stats. Identities = 67/157 (42%), Positives = 93/157 (59%), Gaps = 2/157 (1%) Query: 23 DADFSRISSEITHKGFLVTSV-DQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLER 81 D + + + G + + D L +W S+ ACC VE AS P YD ER Sbjct: 3 DTTVNTLKITLKSIGMDIKLLPDSLASWGTKFSIWPAHLVTACCGVEFAHASAPGYDAER 62 Query: 82 FGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYS 141 +GF P PRQ++ +++ GT+T KMA ++ Y+QMP P++VI+MGSCA GG + SY Sbjct: 63 WGFLPIFGPRQTNSIVIEGTVTRKMARIVKTAYEQMPYPKFVIAMGSCAMEGGVFWNSYH 122 Query: 142 VVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 VVR + IVPVD +V GCPPT EA+I I ++Q KI Sbjct: 123 VVR-VNEIVPVDAWVMGCPPTPEAVIRAIRMVQSKIE 158 >gi|115378556|ref|ZP_01465711.1| NADH-quinone oxidoreductase chain b [Stigmatella aurantiaca DW4/3-1] gi|310820744|ref|YP_003953102.1| NADH-quinone oxidoreductase chain b [Stigmatella aurantiaca DW4/3-1] gi|115364428|gb|EAU63508.1| NADH-quinone oxidoreductase chain b [Stigmatella aurantiaca DW4/3-1] gi|309393816|gb|ADO71275.1| NADH-quinone oxidoreductase chain B [Stigmatella aurantiaca DW4/3-1] Length = 187 Score = 184 bits (468), Expect = 4e-45, Method: Composition-based stats. Identities = 70/159 (44%), Positives = 104/159 (65%), Gaps = 4/159 (2%) Query: 22 VDADFSRISSEITHK--GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDL 79 + D + I + + FL V + + WAR SL + ACC +E M + R+DL Sbjct: 2 AETDIAPIVTTRRDETVSFLQRVVSKGLGWARKYSLFTYPYATACCGMEYMSVAGGRHDL 61 Query: 80 ERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY 138 RFG PR SPRQ+D+++V GT+ K A L+RVY+QM EP++V++ G CA+ GG ++ Sbjct: 62 ARFGAEYPRFSPRQADMLLVTGTINLKQAPILKRVYEQMCEPKWVVAFGVCASSGG-FYD 120 Query: 139 SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 +Y+V++G DRI+PVD+Y+PGCPP E ++ ILLLQ+KI Sbjct: 121 NYAVLQGIDRIIPVDVYIPGCPPRPEQVLDAILLLQEKI 159 >gi|212224742|ref|YP_002307978.1| membrane bound hydrogenase, NiFe-hydrogenase small subunit [Thermococcus onnurineus NA1] gi|212009699|gb|ACJ17081.1| membrane bound hydrogenase, NiFe-hydrogenase small subunit [Thermococcus onnurineus NA1] Length = 175 Score = 184 bits (468), Expect = 4e-45, Method: Composition-based stats. Identities = 58/163 (35%), Positives = 92/163 (56%), Gaps = 4/163 (2%) Query: 21 KVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMT---FGLACCAVEMMQASMPRY 77 KV AD +R + + + L + QL + S C +E++ A PRY Sbjct: 4 KVPADQNRTNGTTSEREMLEKRIAQLCRFIGR-SPWVFHVNSGSCNGCDIEIIAALTPRY 62 Query: 78 DLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137 D ERFG SPR +DV++V G +T++ ++ VY+Q P+P+ VI++GSC GG ++ Sbjct: 63 DAERFGVKLVGSPRHADVLLVTGPVTDQSLERVKLVYEQTPDPKIVIAVGSCPTGGSVFY 122 Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 S I+PVD+YVPGCPP EA++YG++L +K+ ++ Sbjct: 123 ESPFTNAPLSNIIPVDVYVPGCPPRPEAILYGVVLALEKLAKI 165 >gi|149195032|ref|ZP_01872124.1| proton-translocating NADH-quinone oxidoreductase, B subunit [Caminibacter mediatlanticus TB-2] gi|149134745|gb|EDM23229.1| proton-translocating NADH-quinone oxidoreductase, B subunit [Caminibacter mediatlanticus TB-2] Length = 157 Score = 184 bits (467), Expect = 5e-45, Method: Composition-based stats. Identities = 59/138 (42%), Positives = 92/138 (66%) Query: 42 SVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGT 101 V +AR+ S + F CC++EM+ A PRYD ER+G+ +PRQ+D++ + G Sbjct: 3 KVLDFFNYARSKSPWIVHFCSGCCSLEMLAAMGPRYDWERYGYMMTPTPRQADIIFITGL 62 Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP 161 ++ K+ AL R Y+QMPEPRYV+++G+CA GG Y+ S SV++ I+P D++V GCPP Sbjct: 63 VSKKILPALLRTYEQMPEPRYVVAIGACAYDGGPYNDSPSVIKNMTEILPADVFVAGCPP 122 Query: 162 TAEALIYGILLLQKKIRR 179 EA++ G+ L++KI+R Sbjct: 123 KPEAIVAGLEELKEKIKR 140 >gi|332701743|ref|ZP_08421831.1| NADH-quinone oxidoreductase, B subunit [Desulfovibrio africanus str. Walvis Bay] gi|332551892|gb|EGJ48936.1| NADH-quinone oxidoreductase, B subunit [Desulfovibrio africanus str. Walvis Bay] Length = 179 Score = 184 bits (467), Expect = 5e-45, Method: Composition-based stats. Identities = 51/140 (36%), Positives = 84/140 (60%), Gaps = 3/140 (2%) Query: 40 VTSVDQLVTWARTGSLMWMTF---GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVM 96 ++ + + +R S + F C +E + P YD+ERFG +P+ +DV+ Sbjct: 1 MSIIKNFINKSRIKSPWIVHFDCGSCNGCDIETLAVLTPLYDVERFGIINVGNPKHADVL 60 Query: 97 IVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV 156 +V GT+ + L+ +Y+QMP P+ V+++G+C GG + Y+VV G DR++PVD+YV Sbjct: 61 LVTGTVNYRNQHVLKTIYEQMPHPKAVVAIGACGLSGGVFRDCYNVVGGVDRVIPVDVYV 120 Query: 157 PGCPPTAEALIYGILLLQKK 176 PGCPP EA+I G++L +K Sbjct: 121 PGCPPKPEAIIDGVVLGLEK 140 >gi|283852201|ref|ZP_06369474.1| NADH-quinone oxidoreductase, B subunit [Desulfovibrio sp. FW1012B] gi|283572427|gb|EFC20414.1| NADH-quinone oxidoreductase, B subunit [Desulfovibrio sp. FW1012B] Length = 176 Score = 184 bits (467), Expect = 6e-45, Method: Composition-based stats. Identities = 73/141 (51%), Positives = 102/141 (72%), Gaps = 3/141 (2%) Query: 40 VTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQSDVMIV 98 +V +LV R S+ MTFGLACCA+EMM M R+D+ R+G R SPRQSD+MIV Sbjct: 22 TPAVQKLVDVCRAMSIWPMTFGLACCAIEMMAVGMARFDIARYGAEVFRPSPRQSDLMIV 81 Query: 99 AGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH--YSYSVVRGCDRIVPVDIYV 156 AGT+ K+A A+ R+++QMP PRYV+++G+CA GG ++ Y+VV+G D ++PVD+YV Sbjct: 82 AGTVNKKIAPAVVRLFEQMPAPRYVMALGNCAISGGPFNIEGQYNVVQGVDTLIPVDVYV 141 Query: 157 PGCPPTAEALIYGILLLQKKI 177 PGCPP EAL+ G+ +Q+KI Sbjct: 142 PGCPPRPEALLEGLFAIQQKI 162 >gi|297569884|ref|YP_003691228.1| NADH-quinone oxidoreductase, B subunit [Desulfurivibrio alkaliphilus AHT2] gi|296925799|gb|ADH86609.1| NADH-quinone oxidoreductase, B subunit [Desulfurivibrio alkaliphilus AHT2] Length = 177 Score = 183 bits (466), Expect = 6e-45, Method: Composition-based stats. Identities = 67/146 (45%), Positives = 93/146 (63%), Gaps = 3/146 (2%) Query: 21 KVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLE 80 K+ + + +D+L+ R SL MTFGLACCA+EMM R+DL+ Sbjct: 3 KLPNHSEQRPQDDHPPVVQFAVLDKLLNLGRANSLWPMTFGLACCAIEMMATGASRFDLD 62 Query: 81 RFGF-APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY--YH 137 RFG R +P+QSDVMIVAGT++ KMA A+ +Y+QMP P++VI+MG+CA GG + Sbjct: 63 RFGAGVFRPAPKQSDVMIVAGTISKKMAPAIVTLYEQMPHPKWVIAMGNCAISGGPFVFE 122 Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTA 163 Y +V G D+I+PVD+Y+PGCPP Sbjct: 123 GQYGIVEGADKILPVDVYIPGCPPRP 148 >gi|296272277|ref|YP_003654908.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Arcobacter nitrofigilis DSM 7299] gi|296096452|gb|ADG92402.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Arcobacter nitrofigilis DSM 7299] Length = 271 Score = 183 bits (464), Expect = 1e-44, Method: Composition-based stats. Identities = 50/143 (34%), Positives = 86/143 (60%), Gaps = 1/143 (0%) Query: 29 ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPR 87 + EI + L ++ L R+ ++ + G C +E+ A P +D ER GF Sbjct: 7 VPEEIENSNTLEAKLEHLKNIKRSFNVYRVDCGSCNGCEIEVFAAITPMWDPERLGFKLV 66 Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCD 147 ASPR +D+++ +G +T +M L R Y+ P+P+ V+++G+C + GG +H +YSV G D Sbjct: 67 ASPRHADILLCSGPVTRQMYYPLLRAYEATPDPKVVVAIGACGSSGGIFHDAYSVWGGID 126 Query: 148 RIVPVDIYVPGCPPTAEALIYGI 170 +++PVD+Y+PGCPP +I+G+ Sbjct: 127 KVIPVDVYIPGCPPHPATIIHGL 149 >gi|119871844|ref|YP_929851.1| NADH-quinone oxidoreductase, B subunit [Pyrobaculum islandicum DSM 4184] gi|119673252|gb|ABL87508.1| NADH-quinone oxidoreductase, B subunit [Pyrobaculum islandicum DSM 4184] Length = 147 Score = 183 bits (464), Expect = 1e-44, Method: Composition-based stats. Identities = 63/142 (44%), Positives = 91/142 (64%), Gaps = 1/142 (0%) Query: 36 KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDV 95 +G + +V ++ W SL ACC VE P YD ERFG P S RQS++ Sbjct: 2 RGAISQAVSRVARWGTKWSLWPPHLVTACCGVEFAHTFGPAYDAERFGMLPIGSLRQSNI 61 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155 +I+ GT+T KMA ++ +YDQMPEP+YVI+MG+CA GG ++ SY +V ++VPV++Y Sbjct: 62 LILEGTITLKMAKFVKYIYDQMPEPKYVIAMGACAIKGGVFYGSYHMV-PASKVVPVNVY 120 Query: 156 VPGCPPTAEALIYGILLLQKKI 177 V GCPPT EA++ + +QK+I Sbjct: 121 VSGCPPTPEAVLKAVEKIQKQI 142 >gi|50555305|ref|XP_505061.1| YALI0F06050p [Yarrowia lipolytica] gi|49650931|emb|CAG77868.1| YALI0F06050p [Yarrowia lipolytica] Length = 216 Score = 182 bits (463), Expect = 1e-44, Method: Composition-based stats. Identities = 91/143 (63%), Positives = 106/143 (74%), Gaps = 2/143 (1%) Query: 12 SGQSSCSLEKVDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVEM 69 +G S + DF S + + + +T++D + WAR GS +TFGLACCAVEM Sbjct: 31 AGTPRVSSSSMPTDFPLPSQQKPNSAVDYTLTTLDAVANWARQGSFWPVTFGLACCAVEM 90 Query: 70 MQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSC 129 M S PRYD +R G RASPRQSD+MIVAGTLTNKMA LR+VYDQMPEPR+VISMGSC Sbjct: 91 MHVSAPRYDQDRLGIIFRASPRQSDIMIVAGTLTNKMAPVLRQVYDQMPEPRWVISMGSC 150 Query: 130 ANGGGYYHYSYSVVRGCDRIVPV 152 ANGGGYYH+SYSVVRGCDRIVPV Sbjct: 151 ANGGGYYHFSYSVVRGCDRIVPV 173 >gi|284042616|ref|YP_003392956.1| NADH-quinone oxidoreductase, B subunit [Conexibacter woesei DSM 14684] gi|283946837|gb|ADB49581.1| NADH-quinone oxidoreductase, B subunit [Conexibacter woesei DSM 14684] Length = 229 Score = 182 bits (463), Expect = 2e-44, Method: Composition-based stats. Identities = 73/168 (43%), Positives = 109/168 (64%), Gaps = 4/168 (2%) Query: 11 ISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMM 70 I Q + + + D R + + L T++D++ WAR S+ TFGLACCA+EMM Sbjct: 22 IQQQRARDMLRGDL-TDRELEQYVEERVLTTTLDKVTAWARGNSMFPATFGLACCAIEMM 80 Query: 71 QASMPRYDLERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSC 129 R D+ RFGF RASPRQ+D++I++G ++ KMA +RR+YDQM EPR+ ISMG+C Sbjct: 81 SLPGARLDIGRFGFEAFRASPRQADMLILSGRVSIKMAPIVRRIYDQMLEPRWAISMGAC 140 Query: 130 ANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 + G ++ Y++V D+ +P+D++VPGCPP EAL + IL L+ K+ Sbjct: 141 CSSMGVFNN-YALV-PADKFMPIDVHVPGCPPRPEALAHAILKLRSKV 186 >gi|308232348|ref|ZP_07415800.2| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis SUMu001] gi|308370160|ref|ZP_07420526.2| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis SUMu002] gi|308371244|ref|ZP_07424331.2| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis SUMu003] gi|308372436|ref|ZP_07428696.2| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis SUMu004] gi|308374785|ref|ZP_07437401.2| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis SUMu006] gi|308376000|ref|ZP_07445800.2| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis SUMu007] gi|308377233|ref|ZP_07441611.2| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis SUMu008] gi|308378201|ref|ZP_07668686.1| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis SUMu009] gi|308380583|ref|ZP_07490460.2| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis SUMu011] gi|308214175|gb|EFO73574.1| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis SUMu001] gi|308324950|gb|EFP13801.1| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis SUMu002] gi|308329366|gb|EFP18217.1| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis SUMu003] gi|308333195|gb|EFP22046.1| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis SUMu004] gi|308340526|gb|EFP29377.1| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis SUMu006] gi|308344466|gb|EFP33317.1| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis SUMu007] gi|308348462|gb|EFP37313.1| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis SUMu008] gi|308353092|gb|EFP41943.1| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis SUMu009] gi|308361019|gb|EFP49870.1| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis SUMu011] Length = 157 Score = 182 bits (462), Expect = 2e-44, Method: Composition-based stats. Identities = 67/127 (52%), Positives = 97/127 (76%), Gaps = 2/127 (1%) Query: 55 LMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRV 113 + TFGLACCA+EMM + PR+D+ RFG A+PRQ+D+MIVAG ++ KMA LR++ Sbjct: 1 MWPATFGLACCAIEMMATAGPRFDIARFGMERFSATPRQADLMIVAGRVSQKMAPVLRQI 60 Query: 114 YDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLL 173 YDQM EP++V++MG CA+ GG ++ Y++V+G D +VPVDIY+PGCPP E L++ IL L Sbjct: 61 YDQMAEPKWVLAMGVCASSGGMFNN-YAIVQGVDHVVPVDIYLPGCPPRPEMLLHAILKL 119 Query: 174 QKKIRRV 180 +KI+++ Sbjct: 120 HEKIQQM 126 >gi|255513406|gb|EET89672.1| NADH-quinone oxidoreductase, B subunit [Candidatus Micrarchaeum acidiphilum ARMAN-2] Length = 206 Score = 182 bits (461), Expect = 3e-44, Method: Composition-based stats. Identities = 67/171 (39%), Positives = 101/171 (59%), Gaps = 7/171 (4%) Query: 8 QKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAV 67 K++ + F R+S F + +V W+R+ S+ M FGLACCA+ Sbjct: 18 TKMLQDSLKKRKTPTNTMFLRLSD------FSKAVSNGVVKWSRSNSMWPMLFGLACCAI 71 Query: 68 EMMQASMPRYDLERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISM 126 E+M R D ER G+ R +PRQ DVMIVAG +T M ++R+Y+QM P+YV++ Sbjct: 72 ELMDFGAARIDAERKGYLLFRGTPRQCDVMIVAGWVTKSMVPRVKRLYEQMASPKYVVAY 131 Query: 127 GSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 G CA GG ++ SY++V+G D+++PVD+Y GCPP E L ++ LQ+K+ Sbjct: 132 GECATAGGPWYESYNIVKGIDQVLPVDVYAIGCPPKPENLFAALMKLQEKV 182 >gi|283853893|ref|ZP_06371106.1| NADH-quinone oxidoreductase, B subunit [Desulfovibrio sp. FW1012B] gi|283570716|gb|EFC18763.1| NADH-quinone oxidoreductase, B subunit [Desulfovibrio sp. FW1012B] Length = 147 Score = 181 bits (460), Expect = 3e-44, Method: Composition-based stats. Identities = 50/137 (36%), Positives = 84/137 (61%), Gaps = 3/137 (2%) Query: 45 QLVTWARTGSLMWMTF---GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGT 101 ++ R S + F C +E++ P YD+ERFG +P+ +DV++V GT Sbjct: 4 NMINQGRIKSPWVVHFDCGSCNGCDIEVLACLTPLYDIERFGIINVGNPKHADVLLVTGT 63 Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP 161 + ++ L+ +YDQMP P+ VI++G+C GG + +Y+VV G D+++PVD+YVPGCP Sbjct: 64 VNHRNKHVLKNIYDQMPGPKAVIAIGACGCTGGVFREAYNVVGGVDKVIPVDVYVPGCPA 123 Query: 162 TAEALIYGILLLQKKIR 178 EA+I G++ +K++ Sbjct: 124 RPEAIIDGVVAALEKVK 140 >gi|254847826|gb|ACT83735.1| NADH dehydrogenase ubiquinone Fe-S 7 protein-like protein [Piriformospora indica] Length = 120 Score = 181 bits (460), Expect = 3e-44, Method: Composition-based stats. Identities = 89/112 (79%), Positives = 98/112 (87%) Query: 71 QASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCA 130 + RYD +R G RASPRQSD+MIVAGTLTNKMA ALR+VYDQMPEPR+VISMGSCA Sbjct: 1 HMAAARYDQDRLGIVFRASPRQSDIMIVAGTLTNKMAPALRKVYDQMPEPRWVISMGSCA 60 Query: 131 NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182 NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG+L LQ+K+RR Sbjct: 61 NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGVLQLQRKMRRNRK 112 >gi|14520920|ref|NP_126395.1| NADH dehydrogenase subunit B [Pyrococcus abyssi GE5] gi|5458137|emb|CAB49626.1| nuoB NADH dehydrogenase I, subunit B [Pyrococcus abyssi GE5] Length = 195 Score = 181 bits (460), Expect = 3e-44, Method: Composition-based stats. Identities = 52/136 (38%), Positives = 78/136 (57%) Query: 43 VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL 102 + L WAR SL ++F C +EM RYD+ERFG P SPRQ D+ ++ G + Sbjct: 10 FEPLFNWARKKSLWIVSFCTGCGGIEMPPLMTSRYDIERFGMIPDPSPRQYDLFLITGYV 69 Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162 T K + Y+ P+P+YV++ GSC GG Y SY+ ++ D+ +PVD+++ GC P Sbjct: 70 TPKTLKRIIITYELSPDPKYVLAHGSCPLNGGIYWDSYNAIKHLDKYIPVDVFIAGCMPR 129 Query: 163 AEALIYGILLLQKKIR 178 EA++ GI L + I Sbjct: 130 PEAVLDGIYKLMEMIE 145 >gi|297303011|ref|XP_002806097.1| PREDICTED: NADH-quinone oxidoreductase subunit B-like, partial [Macaca mulatta] Length = 170 Score = 181 bits (460), Expect = 3e-44, Method: Composition-based stats. Identities = 70/131 (53%), Positives = 91/131 (69%), Gaps = 2/131 (1%) Query: 52 TGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASAL 110 SL FGL+CC VEM A +D+ RFG RASPRQ+D M++AGT KMA + Sbjct: 1 KNSLWPYNFGLSCCYVEMTTAFTAPHDIARFGAEVIRASPRQADFMVIAGTCFIKMAPII 60 Query: 111 RRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGI 170 +R+Y+QM EP++VISMGSCAN GG Y YSVV+G D+ +PVD+YVPGCPP EA + G+ Sbjct: 61 QRLYEQMLEPKWVISMGSCANSGGMY-DIYSVVQGVDKFLPVDVYVPGCPPRPEAFLQGL 119 Query: 171 LLLQKKIRRVG 181 +LLQ+ I + Sbjct: 120 MLLQESIGKER 130 >gi|254166707|ref|ZP_04873561.1| NADH-quinone oxidoreductase, B subunit subfamily [Aciduliprofundum boonei T469] gi|254167366|ref|ZP_04874218.1| NADH-quinone oxidoreductase, B subunit subfamily [Aciduliprofundum boonei T469] gi|289596350|ref|YP_003483046.1| NADH-quinone oxidoreductase, B subunit [Aciduliprofundum boonei T469] gi|197623629|gb|EDY36192.1| NADH-quinone oxidoreductase, B subunit subfamily [Aciduliprofundum boonei T469] gi|197624317|gb|EDY36878.1| NADH-quinone oxidoreductase, B subunit subfamily [Aciduliprofundum boonei T469] gi|289534137|gb|ADD08484.1| NADH-quinone oxidoreductase, B subunit [Aciduliprofundum boonei T469] Length = 146 Score = 181 bits (460), Expect = 4e-44, Method: Composition-based stats. Identities = 55/135 (40%), Positives = 82/135 (60%), Gaps = 3/135 (2%) Query: 53 GSLMWMT---FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASA 109 SL C +E++ A PRYD+ERFG SPR +D ++V G +T M Sbjct: 11 RSLWVFHVNTGSCNGCDIEILAALTPRYDVERFGIKLVGSPRHADALLVTGPVTRDMEDK 70 Query: 110 LRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYG 169 ++R Y+Q+P+P+ VI +GSC GG +H SY++V D+++PVD+YVPGCPP EA+I G Sbjct: 71 VKRFYEQVPDPKVVIVIGSCGISGGVFHESYNLVGPVDKVIPVDVYVPGCPPRPEAIIDG 130 Query: 170 ILLLQKKIRRVGNVK 184 ++ K+ R+ K Sbjct: 131 VVKAWMKLERLRREK 145 >gi|262197697|ref|YP_003268906.1| NADH-quinone oxidoreductase subunit beta [Haliangium ochraceum DSM 14365] gi|262081044|gb|ACY17013.1| NADH-quinone oxidoreductase, B subunit [Haliangium ochraceum DSM 14365] Length = 167 Score = 181 bits (459), Expect = 4e-44, Method: Composition-based stats. Identities = 61/142 (42%), Positives = 95/142 (66%), Gaps = 2/142 (1%) Query: 39 LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APRASPRQSDVMI 97 + T V+ W R SL F ACC +E M + P+YD+ RFG PR SPRQSD+++ Sbjct: 6 VTTRVEDAANWGRKFSLFTYPFVTACCGMEFMSVAAPKYDIARFGAEFPRFSPRQSDLLM 65 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 V GT+T + L+RVY+QM EP +V++ G CA+ GG ++ +YS + G D+++PVDIY+P Sbjct: 66 VVGTITERQGPVLKRVYEQMAEPNWVVAFGVCASTGG-FYQNYSAMPGADQVIPVDIYIP 124 Query: 158 GCPPTAEALIYGILLLQKKIRR 179 GCPP E ++ +++LQ++++ Sbjct: 125 GCPPRPEQVLDALIMLQQRVQE 146 >gi|171186236|ref|YP_001795155.1| NADH-quinone oxidoreductase, B subunit [Thermoproteus neutrophilus V24Sta] gi|170935448|gb|ACB40709.1| NADH-quinone oxidoreductase, B subunit [Thermoproteus neutrophilus V24Sta] Length = 147 Score = 181 bits (459), Expect = 4e-44, Method: Composition-based stats. Identities = 62/147 (42%), Positives = 90/147 (61%), Gaps = 1/147 (0%) Query: 36 KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDV 95 KG + +V ++ W SL ACC VE A YD ERFG P S RQS++ Sbjct: 2 KGAISQAVSRVARWGTKWSLWPPHLVTACCGVEFAHAFGSAYDAERFGMLPMGSLRQSNI 61 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155 +I+ GT+T KMA ++ +YDQMPEP+YVI+MG+CA GG ++ SY +V ++VPV Y Sbjct: 62 LILEGTITLKMAKFVKYIYDQMPEPKYVIAMGACAIKGGVFYGSYHMV-PASKVVPVHAY 120 Query: 156 VPGCPPTAEALIYGILLLQKKIRRVGN 182 + GCPPT EA++ + +Q++I + Sbjct: 121 ISGCPPTPEAVLKAVEKVQERISHAES 147 >gi|126464931|ref|YP_001040040.1| NADH-quinone oxidoreductase, B subunit [Staphylothermus marinus F1] gi|126013754|gb|ABN69132.1| NADH-quinone oxidoreductase, B subunit [Staphylothermus marinus F1] Length = 165 Score = 181 bits (459), Expect = 4e-44, Method: Composition-based stats. Identities = 56/130 (43%), Positives = 86/130 (66%), Gaps = 3/130 (2%) Query: 52 TGSLMWMTF---GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108 + + F C +E++ A P YD ERFG S R +D+++V G +T K A Sbjct: 28 RYTPWLIHFNTGACNGCDIEVLAAITPLYDPERFGIKLAPSIRHADILVVTGAVTKKAAE 87 Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168 L+R+Y+QMP+P++V+++G+CA GG +H SYSV+ G D+++PVDIYVPGCPP EA++ Sbjct: 88 RLKRLYEQMPDPKFVVAVGACAISGGVFHNSYSVLAGTDKVIPVDIYVPGCPPRPEAILD 147 Query: 169 GILLLQKKIR 178 GI+ L K++ Sbjct: 148 GIVKLLKRLE 157 >gi|297616846|ref|YP_003702005.1| NADH dehydrogenase (quinone) [Syntrophothermus lipocalidus DSM 12680] gi|297144683|gb|ADI01440.1| NADH dehydrogenase (quinone) [Syntrophothermus lipocalidus DSM 12680] Length = 165 Score = 181 bits (459), Expect = 4e-44, Method: Composition-based stats. Identities = 58/142 (40%), Positives = 83/142 (58%), Gaps = 3/142 (2%) Query: 46 LVTWARTGSLMWMTF---GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL 102 LV AR+ S M F G C++E+ P YDLERFG +P+ +DV++V GT+ Sbjct: 3 LVHRARSKSPWVMHFDTAGCNGCSIEVFACFTPLYDLERFGIVNVGNPKHADVLLVTGTV 62 Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162 +K L+ VYDQM P+ ++++G CA G +H SY+ + G D++VPVD+YVPGC Sbjct: 63 NHKAKRVLKTVYDQMNHPKVIVAVGICATSGNVFHQSYNCLGGVDKVVPVDVYVPGCAAR 122 Query: 163 AEALIYGILLLQKKIRRVGNVK 184 E +I GI L KK+ K Sbjct: 123 PEVIIDGIFLALKKLEEKRRDK 144 >gi|117925498|ref|YP_866115.1| NADH dehydrogenase subunit B [Magnetococcus sp. MC-1] gi|117609254|gb|ABK44709.1| Membrane bound protein complex subunit mbxJ [Magnetococcus sp. MC-1] Length = 213 Score = 181 bits (459), Expect = 5e-44, Method: Composition-based stats. Identities = 65/175 (37%), Positives = 98/175 (56%), Gaps = 1/175 (0%) Query: 6 VNQKIISGQSSCSLEKVD-ADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLAC 64 + ++ ++G E D+ ++ G + V+ L WAR+ S+ + FG C Sbjct: 5 LEKRTVTGPDGQVFEVDPLKDYFCEATPTVQTGEYLQIVEDLFNWARSNSIWVLGFGTGC 64 Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 A+EM PR+D R+G RA+PRQS++ IV+G L+ K + R Y+QM P+YV+ Sbjct: 65 GAIEMRPLMTPRFDAYRYGVQWRATPRQSNLFIVSGYLSVKTLKRVVRAYEQMQSPKYVM 124 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179 +GSC GG Y SY+ ++ D +PVD+YV GC P EAL+ GI L+K IR Sbjct: 125 GLGSCTINGGMYWDSYNTIKQLDDYLPVDLYVTGCMPRPEALLSGIEALKKIIRE 179 >gi|118474722|ref|YP_891335.1| hydrogenase-Ni,Fe-hydrogenase III small subunit [Campylobacter fetus subsp. fetus 82-40] gi|118413948|gb|ABK82368.1| hydrogenase-ni,fe-hydrogenase III small subunit [Campylobacter fetus subsp. fetus 82-40] Length = 271 Score = 181 bits (459), Expect = 5e-44, Method: Composition-based stats. Identities = 55/157 (35%), Positives = 92/157 (58%), Gaps = 5/157 (3%) Query: 29 ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPR 87 + +I L + ++ L R+ S+ + G C +E+ A P +D ERFGF Sbjct: 4 VPDDIQRSNDLNSKLNLLKNIKRSFSVFRIDCGSCNGCEIEIFAALSPLWDPERFGFKLV 63 Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCD 147 A+PR +D++IV+G +T +M L R Y+ P+P+ V+ G+C GG +H SY+V G D Sbjct: 64 ANPRHADILIVSGPITRQMYYPLLRAYEATPDPKIVVGFGACGVSGGIFHDSYAVWGGAD 123 Query: 148 RIVPVDIYVPGCPPTAEALIYGIL----LLQKKIRRV 180 +I+PVD++VPGCPP ++IY + L+++K+ + Sbjct: 124 KILPVDVFVPGCPPHPASIIYALATAVGLIEQKLEKQ 160 >gi|154175443|ref|YP_001407625.1| hypothetical protein CCV52592_1637 [Campylobacter curvus 525.92] gi|112802282|gb|EAT99626.1| HsdS [Campylobacter curvus 525.92] Length = 274 Score = 181 bits (459), Expect = 5e-44, Method: Composition-based stats. Identities = 55/158 (34%), Positives = 92/158 (58%), Gaps = 1/158 (0%) Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAP 86 ++ +I L ++ L R+ S+ + G C +E+ A P +D ERFGF Sbjct: 5 QVPQDIKTANDLTAKLEHLKNIKRSFSVYRIDCGSCNGCEIEIFAAITPMWDPERFGFKL 64 Query: 87 RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGC 146 A+PR +D++I +G +T +M L R Y+ P+P+ V++ G+C + GG +H +YSV G Sbjct: 65 VANPRHADILICSGPVTRQMYYPLLRAYEAAPDPKIVVAFGACGSSGGIFHDAYSVWGGI 124 Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 D+I+PVD+Y+PGCPP ++IYG+ + I + + K Sbjct: 125 DKIIPVDVYIPGCPPHPASVIYGLGMALGIIDQKLHKK 162 >gi|326390323|ref|ZP_08211882.1| NADH-quinone oxidoreductase, B subunit [Thermoanaerobacter ethanolicus JW 200] gi|325993600|gb|EGD52033.1| NADH-quinone oxidoreductase, B subunit [Thermoanaerobacter ethanolicus JW 200] Length = 198 Score = 180 bits (458), Expect = 5e-44, Method: Composition-based stats. Identities = 52/136 (38%), Positives = 83/136 (61%) Query: 43 VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL 102 +D L+ + R S+ + + C AVE+ + R+D+ERFG P A+PRQ+DV++V G + Sbjct: 13 IDNLIDFFRKRSIWMLHYCTGCGAVELPPSMTSRWDIERFGIVPMATPRQADVLLVTGYV 72 Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162 + K + ++Y+QMPEP++V++ GSC GG Y SY+ + +PVDI V GC P Sbjct: 73 SLKTLKRIIKIYEQMPEPKWVLAFGSCTVNGGIYWDSYNTITNLAEYIPVDITVSGCMPR 132 Query: 163 AEALIYGILLLQKKIR 178 EA+I + L + I+ Sbjct: 133 PEAVIDALQTLMEMIQ 148 >gi|222100331|ref|YP_002534899.1| NADH dehydrogenase [Thermotoga neapolitana DSM 4359] gi|221572721|gb|ACM23533.1| NADH dehydrogenase [Thermotoga neapolitana DSM 4359] Length = 178 Score = 180 bits (458), Expect = 5e-44, Method: Composition-based stats. Identities = 53/139 (38%), Positives = 83/139 (59%) Query: 41 TSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAG 100 T +++ R+ S+ + + C AVE+ + R+D+ERFG AP A+PRQ+D++++ G Sbjct: 5 TVWERIADALRSRSIWMLHYCTGCGAVELPPSMTSRFDMERFGIAPMATPRQADILLITG 64 Query: 101 TLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCP 160 L K + Y+QMP+P+YV+ GSC GG Y SY+ V D +PVD+Y+ GC Sbjct: 65 YLNTKTLRRVIYTYEQMPDPKYVVGFGSCTINGGIYFDSYATVNRLDYYIPVDVYIAGCM 124 Query: 161 PTAEALIYGILLLQKKIRR 179 P EA++ L +KIR+ Sbjct: 125 PRPEAILEAFNYLMEKIRK 143 >gi|307265396|ref|ZP_07546952.1| NADH-quinone oxidoreductase, B subunit [Thermoanaerobacter wiegelii Rt8.B1] gi|306919510|gb|EFN49728.1| NADH-quinone oxidoreductase, B subunit [Thermoanaerobacter wiegelii Rt8.B1] Length = 198 Score = 180 bits (458), Expect = 5e-44, Method: Composition-based stats. Identities = 52/136 (38%), Positives = 83/136 (61%) Query: 43 VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL 102 +D L+ + R S+ + + C AVE+ + R+D+ERFG P A+PRQ+DV++V G + Sbjct: 13 IDNLIDFFRKRSIWILHYCTGCGAVELPPSMTSRWDIERFGIVPMATPRQADVLLVTGYV 72 Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162 + K + ++Y+QMPEP++V++ GSC GG Y SY+ + +PVDI V GC P Sbjct: 73 SLKTLKRIIKIYEQMPEPKWVLAFGSCTVNGGIYWDSYNTITNLAEYIPVDITVSGCMPR 132 Query: 163 AEALIYGILLLQKKIR 178 EA+I + L + I+ Sbjct: 133 PEAVIDALQTLMEMIQ 148 >gi|157164480|ref|YP_001466173.1| hydrogenase-4 component I [Campylobacter concisus 13826] gi|112801502|gb|EAT98846.1| hydrogenase-4 component I [Campylobacter concisus 13826] Length = 274 Score = 180 bits (458), Expect = 6e-44, Method: Composition-based stats. Identities = 54/158 (34%), Positives = 92/158 (58%), Gaps = 1/158 (0%) Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAP 86 ++ +I L ++ L R+ S+ + G C +E+ A P +D ERFGF Sbjct: 5 QVPEDIKTANDLTAKLEHLKNIKRSFSVYRIDCGSCNGCEIEIFAAITPMWDPERFGFKL 64 Query: 87 RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGC 146 A+PR +D+++ +G +T +M L R Y+ P+P+ V++ G+C + GG +H +YSV G Sbjct: 65 VANPRHADILLCSGPVTRQMYYPLLRAYEAAPDPKIVVAFGACGSTGGIFHDAYSVWGGI 124 Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 D+I+PVD+Y+PGCPP ++IYG+ + I + + K Sbjct: 125 DKIIPVDVYIPGCPPHPASVIYGLGMALGIIDQKLHKK 162 >gi|11499417|ref|NP_070656.1| F420H2:quinone oxidoreductase, 39.7 kDa subunit, putative [Archaeoglobus fulgidus DSM 4304] gi|2648716|gb|AAB89421.1| F420H2:quinone oxidoreductase, 39.7 kDa subunit, putative [Archaeoglobus fulgidus DSM 4304] Length = 353 Score = 180 bits (458), Expect = 6e-44, Method: Composition-based stats. Identities = 57/133 (42%), Positives = 78/133 (58%), Gaps = 1/133 (0%) Query: 46 LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNK 105 + W SL + ACC E+ A YD ER G RQ++++IV G +T K Sbjct: 19 IKKWGTKWSLWPVHLVTACCGAELAHAFACGYDGERIGALNYGIARQTNLIIVEGAITRK 78 Query: 106 MASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEA 165 MA LR ++QMP+P++VI MG+C GG + Y +V+ D +VPVD ++PGCPPT EA Sbjct: 79 MAKVLRITWEQMPDPKFVIVMGACGLQGGIFWNGYHMVKPSD-VVPVDFFIPGCPPTPEA 137 Query: 166 LIYGILLLQKKIR 178 L+ GI LQ KI Sbjct: 138 LLRGIRQLQFKIE 150 >gi|118579068|ref|YP_900318.1| NADH-quinone oxidoreductase subunit B [Pelobacter propionicus DSM 2379] gi|118580047|ref|YP_901297.1| NADH-quinone oxidoreductase subunit B [Pelobacter propionicus DSM 2379] gi|118581593|ref|YP_902843.1| NADH-quinone oxidoreductase subunit B [Pelobacter propionicus DSM 2379] gi|218528002|sp|A1ALP0|NUOB_PELPD RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|118501778|gb|ABK98260.1| NADH dehydrogenase subunit B [Pelobacter propionicus DSM 2379] gi|118502757|gb|ABK99239.1| NADH dehydrogenase subunit B [Pelobacter propionicus DSM 2379] gi|118504303|gb|ABL00786.1| NADH dehydrogenase subunit B [Pelobacter propionicus DSM 2379] Length = 163 Score = 180 bits (458), Expect = 6e-44, Method: Composition-based stats. Identities = 68/141 (48%), Positives = 96/141 (68%), Gaps = 2/141 (1%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APRASPRQSDVM 96 +L T D+L+ W R S+ F ACC +E M + YD +RFG PR +PRQSD++ Sbjct: 6 YLTTRKDELIGWVRKFSIFPYPFVTACCGMEFMAVASTLYDTDRFGAALPRFTPRQSDLL 65 Query: 97 IVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV 156 +V GT+T+K A ++RVYDQM +P++V++ G+CA GG Y Y+V++G DRI+PVDIY+ Sbjct: 66 MVVGTITHKEAPVIKRVYDQMCDPKWVMAFGACATSGGVYRN-YTVLQGVDRIIPVDIYI 124 Query: 157 PGCPPTAEALIYGILLLQKKI 177 PGCPP E +I I+ LQ KI Sbjct: 125 PGCPPRPEMVIDAIMKLQDKI 145 >gi|303248163|ref|ZP_07334427.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfovibrio fructosovorans JJ] gi|302490427|gb|EFL50336.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfovibrio fructosovorans JJ] Length = 147 Score = 180 bits (458), Expect = 6e-44, Method: Composition-based stats. Identities = 50/139 (35%), Positives = 84/139 (60%), Gaps = 3/139 (2%) Query: 43 VDQLVTWARTGSLMWMTF---GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVA 99 + ++ R S + F C +E++ P YD+ERFG +P+ +DV++V Sbjct: 2 LSNMINKGRIKSPWVVHFDCGSCNGCDIEVLACLTPLYDIERFGIVNVGNPKHADVLLVT 61 Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGC 159 GT+ + L+ +YDQMP P+ VI++G+C GG + +Y+VV G D+++PVD+YVPGC Sbjct: 62 GTVNQRNKHVLKNIYDQMPGPKAVIAIGACGCTGGVFREAYNVVGGVDKVIPVDVYVPGC 121 Query: 160 PPTAEALIYGILLLQKKIR 178 P EA+I G++ +K++ Sbjct: 122 PARPEAIIDGVVAALEKVK 140 >gi|170289385|ref|YP_001739623.1| NADH-quinone oxidoreductase, B subunit [Thermotoga sp. RQ2] gi|170176888|gb|ACB09940.1| NADH-quinone oxidoreductase, B subunit [Thermotoga sp. RQ2] Length = 178 Score = 180 bits (457), Expect = 8e-44, Method: Composition-based stats. Identities = 54/147 (36%), Positives = 83/147 (56%), Gaps = 4/147 (2%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 + + D L R+ S+ + + C AVE+ + R+D+ERFG AP A+PRQ Sbjct: 1 MKERSIWERIADNL----RSRSIWMLHYCTGCGAVELPPSMTSRFDMERFGIAPMATPRQ 56 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 +D++++ G L K + Y+QMP+P+YV+ GSC GG Y SY+ V D +PV Sbjct: 57 ADILLITGYLNTKTLRRVIYTYEQMPDPKYVVGFGSCTINGGIYFDSYATVNRLDYYIPV 116 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179 D+Y+ GC P EA++ L +KIR+ Sbjct: 117 DVYIAGCMPRPEAILEAFNYLMEKIRK 143 >gi|15643970|ref|NP_229019.1| NADH dehydrogenase subunit B [Thermotoga maritima MSB8] gi|4981767|gb|AAD36289.1|AE001778_10 NADH dehydrogenase, putative [Thermotoga maritima MSB8] Length = 178 Score = 180 bits (457), Expect = 8e-44, Method: Composition-based stats. Identities = 54/147 (36%), Positives = 83/147 (56%), Gaps = 4/147 (2%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 + + D L R+ S+ + + C AVE+ + R+D+ERFG AP A+PRQ Sbjct: 1 MKERSIWERIADNL----RSRSIWMLHYCTGCGAVELPPSMTSRFDMERFGIAPMATPRQ 56 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 +D++++ G L K + Y+QMP+P+YV+ GSC GG Y SY+ V D +PV Sbjct: 57 ADILLITGYLNTKTLRRVIYTYEQMPDPKYVVGFGSCTINGGIYFDSYATVNRLDYYIPV 116 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179 D+Y+ GC P EA++ L +KIR+ Sbjct: 117 DVYIAGCMPRPEAILEAFNYLMEKIRK 143 >gi|322419366|ref|YP_004198589.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Geobacter sp. M18] gi|320125753|gb|ADW13313.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Geobacter sp. M18] Length = 164 Score = 180 bits (456), Expect = 1e-43, Method: Composition-based stats. Identities = 56/143 (39%), Positives = 86/143 (60%), Gaps = 3/143 (2%) Query: 43 VDQLVTWARTGSLMWMTF---GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVA 99 + +LV +R S + C +E++ P YD+ERFG +P+ +DV++V Sbjct: 2 LKKLVKTSRVKSPWLIHLDCSSCNGCDIEVLACLTPLYDVERFGILNVGNPKHADVLVVT 61 Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGC 159 GT+ ++ L +YDQMPEP+ V+++G+C GG + S++VV G DR+VPVD YVPGC Sbjct: 62 GTVNHRNRKVLENIYDQMPEPKVVVAVGACGCSGGVFRDSFNVVGGVDRVVPVDAYVPGC 121 Query: 160 PPTAEALIYGILLLQKKIRRVGN 182 P EA+I GI+L +K+ G Sbjct: 122 APKPEAIIDGIVLALEKLAEKGK 144 >gi|118579032|ref|YP_900282.1| NADH-quinone oxidoreductase subunit B [Pelobacter propionicus DSM 2379] gi|118501742|gb|ABK98224.1| ech hydrogenase subunit C [Pelobacter propionicus DSM 2379] Length = 164 Score = 179 bits (455), Expect = 1e-43, Method: Composition-based stats. Identities = 51/148 (34%), Positives = 89/148 (60%), Gaps = 3/148 (2%) Query: 40 VTSVDQLVTWARTGSLMWMTF---GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVM 96 + +D++V WAR S + + C +E++ P +D+ERFG + +PR +DV+ Sbjct: 1 MKIIDRIVNWARIKSPWVIHYNTGACNGCDIEIVATLTPVFDIERFGCQLKGTPRHADVL 60 Query: 97 IVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV 156 + +G +T + + R+Y+QMPEP++V+++GSCA GG + Y+++ G D ++PV YV Sbjct: 61 LCSGPVTRQSRDRIIRIYEQMPEPKFVVAVGSCACSGGVFQGCYNILGGIDSVIPVSAYV 120 Query: 157 PGCPPTAEALIYGILLLQKKIRRVGNVK 184 PGC EA+I G++ L + R V+ Sbjct: 121 PGCAARPEAIIDGVVKLLTTLERKKAVE 148 >gi|332157678|ref|YP_004422957.1| NADH dehydrogenase subunit B [Pyrococcus sp. NA2] gi|331033141|gb|AEC50953.1| NADH dehydrogenase subunit B [Pyrococcus sp. NA2] Length = 192 Score = 178 bits (453), Expect = 2e-43, Method: Composition-based stats. Identities = 52/136 (38%), Positives = 77/136 (56%) Query: 43 VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL 102 + L WAR SL + F C +EM RYD+ERFG P SPRQ D+ ++ G + Sbjct: 7 FEPLFNWARKKSLWIVAFCTGCGGIEMPPLMTARYDIERFGIMPDPSPRQYDLFLITGYV 66 Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162 T K + Y+ P+P+YV++ GSC GG Y SY+ ++ D+ +PVD+++ GC P Sbjct: 67 TPKTLKRIIITYELSPDPKYVLAHGSCPLNGGIYWDSYNAIKHLDKYIPVDVFIAGCMPR 126 Query: 163 AEALIYGILLLQKKIR 178 EA++ GI L + I Sbjct: 127 PEAVMDGIYKLMEMIE 142 >gi|302824537|ref|XP_002993911.1| hypothetical protein SELMODRAFT_4550 [Selaginella moellendorffii] gi|302824543|ref|XP_002993914.1| hypothetical protein SELMODRAFT_4549 [Selaginella moellendorffii] gi|300138278|gb|EFJ05052.1| hypothetical protein SELMODRAFT_4550 [Selaginella moellendorffii] gi|300138281|gb|EFJ05055.1| hypothetical protein SELMODRAFT_4549 [Selaginella moellendorffii] Length = 209 Score = 178 bits (453), Expect = 2e-43, Method: Composition-based stats. Identities = 70/181 (38%), Positives = 100/181 (55%), Gaps = 12/181 (6%) Query: 1 MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTF 60 +G TVN +++ S ++ D + T+++ WAR S + + Sbjct: 14 IGNNTVNDLMVNPMGRPSGDRATPD-----------SIVPTTLNDSTNWARLSSSRPLPY 62 Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 G +CC++E R D +R G PR+SPRQ+D+ I AGT T KMA +L R Y+QMPEP Sbjct: 63 GTSCCSIEFAPLIGSRSDSDRHGSVPRSSPRQADLTITAGTATMKMAPSLVRSYEQMPEP 122 Query: 121 RYVISMGSCANGGGYYH-YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179 +Y I+MG+ GG +S VRG D+ +P DIY PGCPP EALI I+ +KK+ R Sbjct: 123 KYAIAMGARTVTGGMLSTDPHSTVRGVDKSIPADIYPPGCPPKPEALIDAIIKPRKKVSR 182 Query: 180 V 180 Sbjct: 183 E 183 >gi|150021104|ref|YP_001306458.1| NADH dehydrogenase subunit B [Thermosipho melanesiensis BI429] gi|149793625|gb|ABR31073.1| NADH-quinone oxidoreductase, B subunit [Thermosipho melanesiensis BI429] Length = 180 Score = 178 bits (453), Expect = 2e-43, Method: Composition-based stats. Identities = 55/146 (37%), Positives = 80/146 (54%), Gaps = 4/146 (2%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 I + D+L R+ SL + + C AVE+ R+D+ERFG P A+PRQ Sbjct: 3 INERNLWEKIADKL----RSKSLWMLHYCTGCGAVELPPTMTSRFDMERFGMGPMATPRQ 58 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 +D++ + G L+ K + Y+QM EP+YVI GSC GG Y+ SY+ + D +PV Sbjct: 59 ADILFITGYLSAKTLRRVIYTYEQMAEPKYVIGFGSCTLNGGIYYDSYATINKLDYYIPV 118 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIR 178 D+Y+ GC P EAL+ L + IR Sbjct: 119 DLYIAGCMPRPEALLEAFNKLMRMIR 144 >gi|67528182|ref|XP_661901.1| hypothetical protein AN4297.2 [Aspergillus nidulans FGSC A4] gi|40740847|gb|EAA60037.1| hypothetical protein AN4297.2 [Aspergillus nidulans FGSC A4] Length = 184 Score = 178 bits (453), Expect = 2e-43, Method: Composition-based stats. Identities = 86/108 (79%), Positives = 95/108 (87%) Query: 77 YDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY 136 YD +R G RASPRQSDVMIVAGTLTNKMA ALR+VYDQMP+PR+VISMGSCANGGGYY Sbjct: 72 YDQDRLGIIFRASPRQSDVMIVAGTLTNKMAPALRQVYDQMPDPRWVISMGSCANGGGYY 131 Query: 137 HYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 HYSYSVVRGCDRIVPVD+YVPGCPPT+EAL+YGI LQKK+R + Sbjct: 132 HYSYSVVRGCDRIVPVDVYVPGCPPTSEALMYGIFQLQKKMRHTRITR 179 >gi|327310885|ref|YP_004337782.1| NADH-quinone oxidoreductase subunits B and D [Thermoproteus uzoniensis 768-20] gi|326947364|gb|AEA12470.1| NADH-quinone oxidoreductase subunits B and D [Thermoproteus uzoniensis 768-20] Length = 561 Score = 178 bits (453), Expect = 2e-43, Method: Composition-based stats. Identities = 58/129 (44%), Positives = 81/129 (62%), Gaps = 1/129 (0%) Query: 49 WARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108 W SL ACC VE+ A P YD ER G P S R S+++I+ GT+T KMA Sbjct: 16 WGTKWSLWPPHLVTACCGVELAHAFGPAYDAERLGVLPMPSARHSNLLIIEGTITLKMAK 75 Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168 ++ VY+QMPEP+YV++MG+CA GG ++ SY +V +V VD+YV GCPPT EAL+ Sbjct: 76 FVKWVYEQMPEPKYVVAMGACAIKGGVFYGSYHMV-PASNVVGVDVYVSGCPPTPEALLK 134 Query: 169 GILLLQKKI 177 + +Q+ + Sbjct: 135 AVEKVQENV 143 >gi|18977816|ref|NP_579173.1| NADH dehydrogenase subunit B [Pyrococcus furiosus DSM 3638] gi|18893567|gb|AAL81568.1| NADH dehydrogenase subunit [Pyrococcus furiosus DSM 3638] Length = 192 Score = 178 bits (452), Expect = 3e-43, Method: Composition-based stats. Identities = 53/136 (38%), Positives = 77/136 (56%) Query: 43 VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL 102 + L WAR SL + F C +EM RYDLERFG P SPRQ D+ ++ G + Sbjct: 7 FEPLFNWARKKSLWIVAFCTGCGGIEMPPLMTARYDLERFGIMPDPSPRQYDLFLITGYV 66 Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162 T K + Y+ P+P+YV++ GSC GG Y +Y+ ++ D+ +PVD+Y+ GC P Sbjct: 67 TPKTLKRIIITYEMAPDPKYVLAHGSCPINGGIYWDAYNAIKQLDKYIPVDVYIAGCMPR 126 Query: 163 AEALIYGILLLQKKIR 178 EA++ GI L + I Sbjct: 127 PEAVMDGIKKLMEMIE 142 >gi|255961309|ref|YP_003097491.1| NADH dehydrogenase subunit K [Selaginella moellendorffii] gi|254941481|gb|ACT88996.1| NADH dehydrogenase subunit K [Selaginella moellendorffii] Length = 213 Score = 178 bits (452), Expect = 3e-43, Method: Composition-based stats. Identities = 70/181 (38%), Positives = 100/181 (55%), Gaps = 12/181 (6%) Query: 1 MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTF 60 +G TVN +++ S ++ D + T+++ WAR S + + Sbjct: 14 IGNNTVNDLMVNPMGRPSGDRATPD-----------SIVPTTLNDSTNWARLSSSRPLPY 62 Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 G +CC++E R D +R G PR+SPRQ+D+ I AGT T KMA +L R Y+QMPEP Sbjct: 63 GTSCCSIEFAPLIGSRSDSDRHGSVPRSSPRQADLTITAGTATMKMAPSLVRSYEQMPEP 122 Query: 121 RYVISMGSCANGGGYYH-YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179 +Y I+MG+ GG +S VRG D+ +P DIY PGCPP EALI I+ +KK+ R Sbjct: 123 KYAIAMGARTVTGGMLSTDPHSTVRGVDKSIPADIYPPGCPPKPEALIDAIIKPRKKVSR 182 Query: 180 V 180 Sbjct: 183 E 183 >gi|296399240|gb|ADH10415.1| NADH-plastoquinone oxidoreductase subunit K [Selaginella moellendorffii] Length = 212 Score = 178 bits (451), Expect = 3e-43, Method: Composition-based stats. Identities = 70/181 (38%), Positives = 100/181 (55%), Gaps = 12/181 (6%) Query: 1 MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTF 60 +G TVN +++ S ++ D + T+++ WAR S + + Sbjct: 14 IGNNTVNDLMVNPMGRPSGDRATPD-----------SIVPTTLNDSTNWARLSSSRPLPY 62 Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 G +CC++E R D +R G PR+SPRQ+D+ I AGT T KMA +L R Y+QMPEP Sbjct: 63 GTSCCSIEFAPLIGSRSDSDRHGSVPRSSPRQADLTITAGTATMKMAPSLVRSYEQMPEP 122 Query: 121 RYVISMGSCANGGGYYH-YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179 +Y I+MG+ GG +S VRG D+ +P DIY PGCPP EALI I+ +KK+ R Sbjct: 123 KYAIAMGARTVTGGMLSTDPHSTVRGVDKSIPADIYPPGCPPKPEALIDAIIKPRKKVSR 182 Query: 180 V 180 Sbjct: 183 E 183 >gi|255322773|ref|ZP_05363915.1| NADH ubiquinone oxidoreductase, 20 Kd subunit [Campylobacter showae RM3277] gi|255300115|gb|EET79390.1| NADH ubiquinone oxidoreductase, 20 Kd subunit [Campylobacter showae RM3277] Length = 276 Score = 178 bits (451), Expect = 4e-43, Method: Composition-based stats. Identities = 52/153 (33%), Positives = 89/153 (58%), Gaps = 1/153 (0%) Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAP 86 ++ I L ++ L R+ S+ + G C +E+ A P +D ERFGF Sbjct: 5 QVPENIKTANDLTAKLEHLKNIKRSFSVYRIDCGSCNGCEIEIFAAITPMWDPERFGFKL 64 Query: 87 RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGC 146 A+PR +D+++ +G +T +M L R Y+ P+P+ V++ G+C + GG ++ +YSV G Sbjct: 65 VANPRHADILVCSGPVTRQMYYPLLRAYEAAPDPKIVVAFGACGSTGGIFYDAYSVWGGI 124 Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179 D+I+PVD+Y+PGCPP ++IYG+ + I + Sbjct: 125 DKIIPVDVYIPGCPPHPASVIYGLGMALGIIDQ 157 >gi|149194128|ref|ZP_01871226.1| HYDROGENASE-Ni,Fe-hydrogenase III small subunit [Caminibacter mediatlanticus TB-2] gi|149136081|gb|EDM24559.1| HYDROGENASE-Ni,Fe-hydrogenase III small subunit [Caminibacter mediatlanticus TB-2] Length = 280 Score = 178 bits (451), Expect = 4e-43, Method: Composition-based stats. Identities = 56/158 (35%), Positives = 89/158 (56%), Gaps = 5/158 (3%) Query: 29 ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPR 87 + +I L + L R+ S+ + G C +E+ A P +D ERFGF Sbjct: 9 LDKDIFDNNSLEDKLRLLKDIKRSFSVFRVDCGSCNGCEIEIFAAITPMWDPERFGFKLV 68 Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCD 147 ASPR +D+++ G LT +M L R Y+ P+P+ VI++G+C GG +H SY+V G D Sbjct: 69 ASPRHADILLCTGPLTRQMYYPLLRAYEATPDPKVVIAVGACGCTGGIFHDSYAVWSGID 128 Query: 148 RIVPVDIYVPGCPPTAEALIYGIL----LLQKKIRRVG 181 +PVD+Y+PGCPP +I+G+ +L +K+++V Sbjct: 129 STLPVDVYIPGCPPHPATIIHGLAVALGILDQKMKKVE 166 >gi|240102769|ref|YP_002959078.1| NADH dehydrogenase subunit B [Thermococcus gammatolerans EJ3] gi|239910323|gb|ACS33214.1| membrane bound oxidoreductase, MbxJ subunit (MbxJ) [Thermococcus gammatolerans EJ3] Length = 194 Score = 177 bits (450), Expect = 4e-43, Method: Composition-based stats. Identities = 51/136 (37%), Positives = 79/136 (58%) Query: 43 VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL 102 + L WAR SL + F C +EM + RYD ERFG P +PR +D+ ++ G + Sbjct: 18 FEPLFRWARKKSLWIVAFCTGCGGIEMPPLATARYDFERFGIMPNPAPRMADLFLITGYV 77 Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162 T K + Y+ M +P+YV++ GSC GG Y SY+VV+ D+ +P+D+ + GC P Sbjct: 78 TPKTLKRIIITYEMMQDPKYVLAHGSCPINGGVYWDSYNVVKQLDKYIPIDVAIAGCMPR 137 Query: 163 AEALIYGILLLQKKIR 178 EA++ GI+ + +KI Sbjct: 138 PEAVMDGIMEIMRKIE 153 >gi|237809381|ref|YP_002893821.1| NADH dehydrogenase subunit B [Tolumonas auensis DSM 9187] gi|259514690|sp|C4LB32|NUOB_TOLAT RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gi|237501642|gb|ACQ94235.1| NADH-quinone oxidoreductase, B subunit [Tolumonas auensis DSM 9187] Length = 223 Score = 177 bits (450), Expect = 5e-43, Method: Composition-based stats. Identities = 67/159 (42%), Positives = 99/159 (62%), Gaps = 9/159 (5%) Query: 14 QSSCSLEKVDADFSRISSEITH---KGFLVTSVDQL----VTWARTGSLMWMTFGLACCA 66 + +E+ A+ + ++ +G L+ ++ + V W R SL FG++CC Sbjct: 9 DPNAPIERYPAEKKQTVNDPLQEVGRGILLGKLENVLNSTVNWGRKNSLWPYNFGISCCY 68 Query: 67 VEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVIS 125 VEM A +D+ RFG RASPRQ+D M++AGT KMA ++R+Y+Q+ EP++VIS Sbjct: 69 VEMTTAFTAVHDVARFGAEVIRASPRQADFMVIAGTPFIKMAPVIQRLYEQLLEPKWVIS 128 Query: 126 MGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164 MG+CAN GG Y YSVV+G D+ +PVD+Y+PGCPP E Sbjct: 129 MGACANSGGMY-DIYSVVQGVDKFLPVDVYIPGCPPRPE 166 >gi|303247493|ref|ZP_07333765.1| NADH-quinone oxidoreductase, B subunit [Desulfovibrio fructosovorans JJ] gi|302491189|gb|EFL51081.1| NADH-quinone oxidoreductase, B subunit [Desulfovibrio fructosovorans JJ] Length = 178 Score = 177 bits (450), Expect = 5e-43, Method: Composition-based stats. Identities = 68/143 (47%), Positives = 100/143 (69%), Gaps = 3/143 (2%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQSDVM 96 +V ++V R S+ MTFG+ACCA+EMM M R+D+ RFG R SPRQSD+M Sbjct: 22 VATPAVQKIVDVCRAMSIWPMTFGIACCAIEMMAVGMARFDIARFGAEVFRPSPRQSDLM 81 Query: 97 IVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH--YSYSVVRGCDRIVPVDI 154 IVAGT+ K+A + R+++QMP PR+V+++G+CA GG ++ Y+VV+G D ++PVD+ Sbjct: 82 IVAGTVNKKLAPLVVRLFEQMPAPRFVMALGNCAISGGPFNIEGQYNVVQGVDTLIPVDV 141 Query: 155 YVPGCPPTAEALIYGILLLQKKI 177 YVPGCPP E L+ G+ +Q+K+ Sbjct: 142 YVPGCPPRPEGLLEGLFAIQQKM 164 >gi|257460517|ref|ZP_05625618.1| formate hydrogenlyase subunit 7 [Campylobacter gracilis RM3268] gi|257441848|gb|EEV16990.1| formate hydrogenlyase subunit 7 [Campylobacter gracilis RM3268] Length = 274 Score = 177 bits (449), Expect = 6e-43, Method: Composition-based stats. Identities = 55/158 (34%), Positives = 90/158 (56%), Gaps = 9/158 (5%) Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAP 86 ++ I + L ++ L R+ S+ + G C +E+ + P +D ERFGF Sbjct: 5 QVPENIKNANDLTAKLELLKNIKRSFSVYRIDCGSCNGCEIEIFASITPMWDPERFGFKL 64 Query: 87 RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGC 146 A+PR +D+++ G +T +M L R Y+ P+P+ V+++ +C + GG +H +YSV G Sbjct: 65 VANPRHADILVCTGPVTRQMYYPLLRAYEAAPDPKIVVALRACGSTGGIFHDAYSVWSGI 124 Query: 147 DRIVPVDIYVPGCPPTAEALIYGI--------LLLQKK 176 D+IVPVD+Y+PGCPP ++IYG+ LQKK Sbjct: 125 DKIVPVDVYIPGCPPHPASIIYGLGMALGIIDQKLQKK 162 >gi|57641152|ref|YP_183630.1| NADH dehydrogenase subunit B [Thermococcus kodakarensis KOD1] gi|57159476|dbj|BAD85406.1| membrane bound hydrogenase, NiFe-hydrogenase small subunit [Thermococcus kodakarensis KOD1] Length = 193 Score = 177 bits (449), Expect = 6e-43, Method: Composition-based stats. Identities = 51/136 (37%), Positives = 79/136 (58%) Query: 43 VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL 102 + L WAR SL + F C +EM + RYD ERFG P +PR +D+ ++ G + Sbjct: 17 FEPLFRWARKKSLWIVAFCTGCGGIEMPPLATARYDFERFGIMPNPAPRMADLFLITGYV 76 Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162 T K + Y+ M +P+YV++ GSC GG Y SY+VV+ D+ +P+D+ + GC P Sbjct: 77 TPKTLKRIIITYEMMQDPKYVLAHGSCPINGGVYWDSYNVVKQLDKYIPIDVAIAGCMPR 136 Query: 163 AEALIYGILLLQKKIR 178 EA++ GI+ + +KI Sbjct: 137 PEAVMDGIMEIMRKIE 152 >gi|242280696|ref|YP_002992825.1| NADH dehydrogenase (quinone) [Desulfovibrio salexigens DSM 2638] gi|242123590|gb|ACS81286.1| NADH dehydrogenase (quinone) [Desulfovibrio salexigens DSM 2638] Length = 144 Score = 177 bits (449), Expect = 6e-43, Method: Composition-based stats. Identities = 52/137 (37%), Positives = 83/137 (60%), Gaps = 3/137 (2%) Query: 43 VDQLVTWARTGSLMWMTF---GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVA 99 + + +R S M F C +E++ P YD+ERFG +P+ +DV++V Sbjct: 2 FKKFIGNSRAKSPWIMHFDCGSCNGCDIEVLACLTPLYDVERFGVVNVGNPKHADVLLVT 61 Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGC 159 GT+ ++ A LR +YDQMP+P+ VI++G+C GG + Y+V+ G D+++PVD+YVPGC Sbjct: 62 GTVNHRNAKVLRNIYDQMPDPKGVIAIGACGLSGGVFRECYNVLGGVDKVIPVDVYVPGC 121 Query: 160 PPTAEALIYGILLLQKK 176 P EA+I G++ K Sbjct: 122 PAKPEAIIDGVVAALAK 138 >gi|268680487|ref|YP_003304918.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Sulfurospirillum deleyianum DSM 6946] gi|268618518|gb|ACZ12883.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Sulfurospirillum deleyianum DSM 6946] Length = 274 Score = 177 bits (449), Expect = 7e-43, Method: Composition-based stats. Identities = 52/144 (36%), Positives = 87/144 (60%), Gaps = 1/144 (0%) Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAP 86 + S+I L ++ L R+ S+ + G C +E+ A P +D ERFGF Sbjct: 5 EVPSDIALANSLEEKLELLKHIGRSFSVFRIDCGSCNGCEIEIFAAITPLWDPERFGFKL 64 Query: 87 RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGC 146 A+PR +D+++ G +T +M L R Y+ P+P+ V+++G+C GG ++ +YSV+ G Sbjct: 65 VANPRHADILLCTGPVTRQMYYPLLRAYEATPDPKIVVALGACGATGGIFYDAYSVLSGI 124 Query: 147 DRIVPVDIYVPGCPPTAEALIYGI 170 D+I+PVD+Y+PGCPP ++IYG+ Sbjct: 125 DKIIPVDVYIPGCPPHPASIIYGL 148 >gi|317486369|ref|ZP_07945197.1| NADH ubiquinone oxidoreductase [Bilophila wadsworthia 3_1_6] gi|316922358|gb|EFV43616.1| NADH ubiquinone oxidoreductase [Bilophila wadsworthia 3_1_6] Length = 163 Score = 177 bits (449), Expect = 7e-43, Method: Composition-based stats. Identities = 50/140 (35%), Positives = 83/140 (59%), Gaps = 3/140 (2%) Query: 42 SVDQLVTWARTGSLMWMTF---GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIV 98 ++Q + R S + + C +E++ P +D+ERFG P+ +DV++V Sbjct: 9 KLNQYINKGRLKSPWVVHYDCGSCNGCDIEVLACLTPVFDVERFGIVNIGDPKHADVLLV 68 Query: 99 AGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPG 158 GT+ + L+ +YDQMPEP+ VI++G+CA GG + Y+VV G D ++PVD+YVPG Sbjct: 69 TGTVNQRNKDVLKNLYDQMPEPKAVIAIGACACTGGVFQDCYNVVGGVDHVIPVDVYVPG 128 Query: 159 CPPTAEALIYGILLLQKKIR 178 C EA+I G++L + ++ Sbjct: 129 CAAKPEAIIDGVVLALEVVK 148 >gi|52549748|gb|AAU83597.1| F420H2-quinone oxidoreductase 45 kD subunit [uncultured archaeon GZfos32E4] Length = 788 Score = 177 bits (448), Expect = 7e-43, Method: Composition-based stats. Identities = 61/151 (40%), Positives = 86/151 (56%), Gaps = 5/151 (3%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 I H G L WA SL F +CC VE+ YD+ER G RQ Sbjct: 12 ILHSGVFT----PLRRWATKWSLWPCHFLTSCCGVELAHTGACGYDMERLGTLNMGISRQ 67 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 ++ ++V GT+T KMA ALR V++QMP+P++V +G+C GG + SY++ R D IVPV Sbjct: 68 ANFIMVEGTITRKMARALRIVWEQMPDPKFVNVIGTCGQRGGIFWNSYNITRPSD-IVPV 126 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 D ++PGCP T E+L+ G+ +Q+KI N Sbjct: 127 DFFIPGCPITPESLLRGVRAVQEKIEGRDNT 157 >gi|52548540|gb|AAU82389.1| F420H2-quinone oxidoreductase 45 kD subunit [uncultured archaeon GZfos17C7] Length = 788 Score = 177 bits (448), Expect = 7e-43, Method: Composition-based stats. Identities = 61/151 (40%), Positives = 86/151 (56%), Gaps = 5/151 (3%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 I H G L WA SL F +CC VE+ YD+ER G RQ Sbjct: 12 ILHSGVFT----PLRRWATKWSLWPCHFLTSCCGVELAHTGACGYDMERLGTLNMGISRQ 67 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 ++ ++V GT+T KMA ALR V++QMP+P++V +G+C GG + SY++ R D IVPV Sbjct: 68 ANFIMVEGTITRKMARALRIVWEQMPDPKFVNVIGTCGQRGGIFWNSYNITRPSD-IVPV 126 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 D ++PGCP T E+L+ G+ +Q+KI N Sbjct: 127 DFFIPGCPITPESLLRGVRAVQEKIEGRDNT 157 >gi|57642024|ref|YP_184502.1| membrane bound hydrogenase, NiFe-hydrogenase small subunit [Thermococcus kodakarensis KOD1] gi|57160348|dbj|BAD86278.1| membrane bound hydrogenase, NiFe-hydrogenase small subunit [Thermococcus kodakarensis KOD1] Length = 176 Score = 177 bits (448), Expect = 8e-43, Method: Composition-based stats. Identities = 56/162 (34%), Positives = 92/162 (56%), Gaps = 4/162 (2%) Query: 22 VDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMT---FGLACCAVEMMQASMPRYD 78 V A+ + S + + L + QL + S C +E++ A PRYD Sbjct: 5 VPANQNGQKSNPSERERLEKRIAQLCRFLGK-SPWVFHVNSGSCNGCDIEIIAALTPRYD 63 Query: 79 LERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY 138 ERFG SPR +D+++V G +TN+ ++ VY+Q P+P+ VI++G+C GG ++ Sbjct: 64 AERFGVKLVGSPRHADILVVTGPVTNQSLERVKLVYEQTPDPKIVIAVGACPTGGSVFYE 123 Query: 139 SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 S DR++PVD+YVPGCPP EA+++G++L +K+ R+ Sbjct: 124 SPFTNAPLDRVIPVDVYVPGCPPRPEAILHGVVLALEKLARM 165 >gi|14591239|ref|NP_143316.1| NADH dehydrogenase subunit B [Pyrococcus horikoshii OT3] gi|3257873|dbj|BAA30556.1| 195aa long hypothetical NADH-ubiquinone oxidoreductase subunit [Pyrococcus horikoshii OT3] Length = 195 Score = 177 bits (448), Expect = 8e-43, Method: Composition-based stats. Identities = 52/136 (38%), Positives = 75/136 (55%) Query: 43 VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL 102 + L WAR SL + F C +EM RYD+ERFG SPRQ D+ ++ G + Sbjct: 10 FEPLFNWARKKSLWIVAFCTGCGGIEMPPLMTARYDIERFGMLSDPSPRQYDLFLITGYV 69 Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162 T K + Y+ P+P+YV++ GSC GG Y SY+ V+ D+ +PVD+++ GC P Sbjct: 70 TPKTLKRIIITYELSPDPKYVLAHGSCPINGGVYWDSYNTVKHLDKYIPVDVFIAGCMPR 129 Query: 163 AEALIYGILLLQKKIR 178 EA++ GI L I Sbjct: 130 PEAVMDGIYKLMDMIE 145 >gi|46578848|ref|YP_009656.1| ech hydrogenase subunit EchC [Desulfovibrio vulgaris str. Hildenborough] gi|120603546|ref|YP_967946.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Desulfovibrio vulgaris DP4] gi|46448260|gb|AAS94915.1| Ech hydrogenase, subunit EchC, putative [Desulfovibrio vulgaris str. Hildenborough] gi|120563775|gb|ABM29519.1| ech hydrogenase subunit C [Desulfovibrio vulgaris DP4] gi|311232712|gb|ADP85566.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfovibrio vulgaris RCH1] Length = 157 Score = 177 bits (448), Expect = 8e-43, Method: Composition-based stats. Identities = 48/139 (34%), Positives = 84/139 (60%), Gaps = 3/139 (2%) Query: 43 VDQLVTWARTGSLMWMTF---GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVA 99 + + R S + F C +E++ P +D+ERFG +P+ +DV++V Sbjct: 4 IKDWINKGRLKSPWVVHFDCGSCNGCDIEVLACLTPVFDVERFGIINVGNPKHADVLLVT 63 Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGC 159 GT+ ++ L+ +YDQMP+P+ VI++G+C + GG + Y+VV G D+++PVD+YVPGC Sbjct: 64 GTVNHRNKKVLKNIYDQMPDPKAVIAIGACGSSGGVFRECYNVVGGVDQVIPVDVYVPGC 123 Query: 160 PPTAEALIYGILLLQKKIR 178 P EA+I G++ + ++ Sbjct: 124 PAKPEAIIDGVVTALEVVK 142 >gi|14591227|ref|NP_143304.1| NADH-ubiquinone oxidoreductase subunit [Pyrococcus horikoshii OT3] gi|3257858|dbj|BAA30541.1| 173aa long hypothetical NADH-ubiquinone oxidoreductase subunit [Pyrococcus horikoshii OT3] Length = 173 Score = 176 bits (447), Expect = 1e-42, Method: Composition-based stats. Identities = 53/154 (34%), Positives = 88/154 (57%), Gaps = 4/154 (2%) Query: 30 SSEITHKGFLVTSVDQLVTWARTGSLMWMT---FGLACCAVEMMQASMPRYDLERFGFAP 86 + + + L + QL + S C +E++ A PRYD ERFG Sbjct: 9 AQQNEERKRLEKRIAQLCKFIGK-SPWVFHVNSGSCNGCDIEIIAALTPRYDAERFGVKL 67 Query: 87 RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGC 146 SPR +D+++V G +TN+ ++ VY+Q P+P+ VI++GSCA GG ++ S Sbjct: 68 VGSPRHADILLVTGPVTNQSLERVKLVYEQTPDPKIVIAVGSCATGGSVFYESPFTNAPL 127 Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 D ++PVD++VPGCPP EA++YG++L +K+ ++ Sbjct: 128 DNVIPVDVFVPGCPPRPEAILYGVVLALEKLAKM 161 >gi|145591231|ref|YP_001153233.1| NADH-quinone oxidoreductase, B subunit [Pyrobaculum arsenaticum DSM 13514] gi|145282999|gb|ABP50581.1| NADH-quinone oxidoreductase, B subunit [Pyrobaculum arsenaticum DSM 13514] Length = 196 Score = 176 bits (447), Expect = 1e-42, Method: Composition-based stats. Identities = 57/157 (36%), Positives = 92/157 (58%), Gaps = 1/157 (0%) Query: 22 VDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLER 81 +D + +S + ++++ W SL + +CC VE+ S P +D ER Sbjct: 1 MDKPTTSMSQALREFLLKKAKLEKIFNWGVRWSLWPVHLVTSCCGVEVAHTSGPGFDAER 60 Query: 82 FGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYS 141 +G P + RQS+V++V GT+T KMA L+ VY+QMPEP++V++MG+CA GG + SY Sbjct: 61 WGVLPFHTMRQSNVILVEGTITRKMAKVLKMVYEQMPEPKFVLAMGACAVRGGLFWNSYH 120 Query: 142 VVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 VV+ + +Y+ GCPPT EA++ ++L KI+ Sbjct: 121 VVQVDTVVPVD-VYIAGCPPTPEAVVRAFIMLHNKIK 156 >gi|317154076|ref|YP_004122124.1| NADH dehydrogenase (quinone) [Desulfovibrio aespoeensis Aspo-2] gi|316944327|gb|ADU63378.1| NADH dehydrogenase (quinone) [Desulfovibrio aespoeensis Aspo-2] Length = 147 Score = 176 bits (447), Expect = 1e-42, Method: Composition-based stats. Identities = 52/129 (40%), Positives = 82/129 (63%), Gaps = 3/129 (2%) Query: 46 LVTWARTGSLMWMTF---GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL 102 + +R S M F C +E++ P YD+ERFG +P+ +DV++V GT+ Sbjct: 5 FIKKSRAKSPWIMHFDCGSCNGCDIEVLACLTPLYDVERFGIINVGNPKHADVLLVTGTV 64 Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162 ++ L+ +YDQMPEP+ VI++G+C N GG + +Y+VV G D+++PVD+YVPGCP Sbjct: 65 NHRNKKVLKNIYDQMPEPKAVIAIGACGNTGGVFRDAYNVVGGVDKVIPVDVYVPGCPAK 124 Query: 163 AEALIYGIL 171 EA+I G++ Sbjct: 125 PEAIIDGVV 133 >gi|254171859|ref|ZP_04878535.1| NADH dehydrogenase beta subunit [Thermococcus sp. AM4] gi|214033755|gb|EEB74581.1| NADH dehydrogenase beta subunit [Thermococcus sp. AM4] Length = 194 Score = 176 bits (447), Expect = 1e-42, Method: Composition-based stats. Identities = 52/136 (38%), Positives = 78/136 (57%) Query: 43 VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL 102 + L WAR SL + F C +EM RYDLERFG P +PR +D+ ++ G + Sbjct: 18 FEPLFRWARKKSLWIVAFCTGCGGIEMPPLFTARYDLERFGMMPNPAPRMADLFLITGYV 77 Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162 T K + Y+ M +P+YV++ GSC GG Y SY+VV+ D+ +P+D+ + GC P Sbjct: 78 TPKTLKRIIITYEMMQDPKYVLAHGSCPINGGVYWDSYNVVKQLDKYIPIDVAIAGCMPR 137 Query: 163 AEALIYGILLLQKKIR 178 EA++ GI + +KI Sbjct: 138 PEAVMDGIREIMRKIE 153 >gi|307595389|ref|YP_003901706.1| NADH-quinone oxidoreductase subunit B [Vulcanisaeta distributa DSM 14429] gi|307550590|gb|ADN50655.1| NADH-quinone oxidoreductase, B subunit [Vulcanisaeta distributa DSM 14429] Length = 420 Score = 176 bits (447), Expect = 1e-42, Method: Composition-based stats. Identities = 62/140 (44%), Positives = 87/140 (62%), Gaps = 1/140 (0%) Query: 39 LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIV 98 L +++ W SL + ACC VEM P YD ER G P +PRQ+++++V Sbjct: 3 LDKALEPYKKWGTKYSLWPVHLVTACCGVEMAHTWNPTYDAERLGSLPWHAPRQTNLILV 62 Query: 99 AGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPG 158 GT+T KMA LR V++QM +P+YVI+MGSCA GG + SY V ++I+P+D Y G Sbjct: 63 EGTITFKMARVLRYVWEQMSDPKYVIAMGSCAAEGGIFWNSYHAV-PVNKIIPIDAYAIG 121 Query: 159 CPPTAEALIYGILLLQKKIR 178 CPPT EA+I I ++Q+KI Sbjct: 122 CPPTPEAVIQMIKIVQRKIE 141 >gi|325969611|ref|YP_004245803.1| NADH-quinone oxidoreductase subunits B and C [Vulcanisaeta moutnovskia 768-28] gi|323708814|gb|ADY02301.1| NADH-quinone oxidoreductase subunits B and C [Vulcanisaeta moutnovskia 768-28] Length = 419 Score = 176 bits (447), Expect = 1e-42, Method: Composition-based stats. Identities = 63/140 (45%), Positives = 86/140 (61%), Gaps = 1/140 (0%) Query: 39 LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIV 98 L ++ W SL + ACC VEM P YD ER G P SPRQ+++++V Sbjct: 3 LDKYLEPYKKWGTKYSLWPVHLVTACCGVEMAHTWNPTYDAERLGSLPWHSPRQTNLILV 62 Query: 99 AGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPG 158 GT++ KMA LR +++QM +P+YVI+MGSCA GG + SY V ++IVPVD Y G Sbjct: 63 EGTISFKMARVLRYIWEQMSDPKYVIAMGSCAAEGGVFWNSYHAV-PVNKIVPVDAYAIG 121 Query: 159 CPPTAEALIYGILLLQKKIR 178 CPPT EA+I I ++Q+KI Sbjct: 122 CPPTPEAVIQMIRIVQRKIE 141 >gi|242399265|ref|YP_002994689.1| Membrane-bound hydrogenase MBH 2, subunit Mbh2J (hydrogenase subunit) [Thermococcus sibiricus MM 739] gi|242265658|gb|ACS90340.1| Membrane-bound hydrogenase MBH 2, subunit Mbh2J (hydrogenase subunit) [Thermococcus sibiricus MM 739] Length = 148 Score = 176 bits (446), Expect = 1e-42, Method: Composition-based stats. Identities = 52/134 (38%), Positives = 78/134 (58%), Gaps = 3/134 (2%) Query: 52 TGSLMWMT---FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108 SL C +E++ A PRYD ERFG SPR +DV++V G + A Sbjct: 8 KRSLWVFHASGGSCNACDIEIIAALTPRYDAERFGIKLVGSPRHADVLLVTGAIPKDFAD 67 Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168 LRR+Y+QMP+P+ VI +G+C GG ++ SY++ D I+PVD+YVPGCPP EA++ Sbjct: 68 KLRRIYEQMPDPKAVIVIGNCGTSGGVFYDSYNIAGPIDEIIPVDVYVPGCPPRPEAIVD 127 Query: 169 GILLLQKKIRRVGN 182 ++ K+ ++ Sbjct: 128 AVVKAWLKLEKLEK 141 >gi|34558135|ref|NP_907950.1| hydrogenase-Ni,Fe-hydrogenase III small subunit [Wolinella succinogenes DSM 1740] gi|34483853|emb|CAE10850.1| HYDROGENASE-Ni,Fe-hydrogenase III small subunit [Wolinella succinogenes] Length = 276 Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 54/157 (34%), Positives = 95/157 (60%), Gaps = 5/157 (3%) Query: 29 ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPR 87 + EI + ++ L R+ S+ + G C +E+ A P +D ERFGF Sbjct: 6 MPEEIKVANEIEQKLELLKHIGRSFSVYRIDCGSCNGCEIEIFAAITPLWDPERFGFKLV 65 Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCD 147 A+PR +D+++ G +T +M L R Y+ P+P+ V+++G+C + GG ++ +YSV+ G D Sbjct: 66 ANPRHADILLCTGPVTRQMYYPLLRAYEAAPDPKLVVALGACGSTGGIFYDAYSVLSGID 125 Query: 148 RIVPVDIYVPGCPPTAEALIYGILL----LQKKIRRV 180 +I+PVD+Y+PGCPP ++IYG+ +++K++RV Sbjct: 126 KIIPVDVYIPGCPPHPASIIYGLTTALGVMEQKLQRV 162 >gi|187251539|ref|YP_001876021.1| NiFe-hydrogenase III small subunit [Elusimicrobium minutum Pei191] gi|186971699|gb|ACC98684.1| NiFe-hydrogenase III small subunit [Elusimicrobium minutum Pei191] Length = 149 Score = 175 bits (445), Expect = 2e-42, Method: Composition-based stats. Identities = 55/138 (39%), Positives = 85/138 (61%), Gaps = 3/138 (2%) Query: 44 DQLVTWARTGSLMWMTF---GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAG 100 +Q+V WAR S + + C +E + A P++D+ERFG +PR +DVM+V+G Sbjct: 6 EQVVAWARRKSPWILHYNSGSCNGCDIETVAALTPKFDVERFGILQHGTPRHADVMVVSG 65 Query: 101 TLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCP 160 ++ + L R+Y+QM EP++V+++G+CA GG Y V+ G D+I+PV Y+PGCP Sbjct: 66 AVSRQQEKRLLRIYNQMAEPKFVVAVGACACSGGVLQGCYGVLGGVDKILPVSAYIPGCP 125 Query: 161 PTAEALIYGILLLQKKIR 178 P EALI GI+ L + Sbjct: 126 PRPEALIDGIVKLLSTVE 143 >gi|118581926|ref|YP_903176.1| NADH-quinone oxidoreductase subunit B [Pelobacter propionicus DSM 2379] gi|118504636|gb|ABL01119.1| NADH-quinone oxidoreductase, B subunit [Pelobacter propionicus DSM 2379] Length = 144 Score = 175 bits (445), Expect = 2e-42, Method: Composition-based stats. Identities = 52/142 (36%), Positives = 89/142 (62%), Gaps = 3/142 (2%) Query: 40 VTSVDQLVTWARTGSLMWMTF---GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVM 96 + ++D+LVTWAR S + F C +E++ + PR+DLERFG + +PR +DV+ Sbjct: 1 MKALDKLVTWARIKSPWVIHFNTGACNGCDIEIVDSLTPRFDLERFGIQLKGTPRHADVL 60 Query: 97 IVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV 156 + +G +T + L R+Y+QM +P++VI++G+CA G + Y+V+ G D ++PV Y+ Sbjct: 61 LCSGPVTRQTKDRLLRIYEQMADPKFVIAVGTCACSAGVFQGCYNVLGGTDTVLPVSAYI 120 Query: 157 PGCPPTAEALIYGILLLQKKIR 178 PGC EA+I G++ L ++ Sbjct: 121 PGCAARPEAIIDGVVKLLSTLK 142 >gi|257053296|ref|YP_003131129.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Halorhabdus utahensis DSM 12940] gi|256692059|gb|ACV12396.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Halorhabdus utahensis DSM 12940] Length = 183 Score = 175 bits (445), Expect = 2e-42, Method: Composition-based stats. Identities = 58/143 (40%), Positives = 87/143 (60%), Gaps = 3/143 (2%) Query: 45 QLVTWARTGSLMWMT---FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGT 101 +++ WAR S + C +E + A MPRYD+ERFG + +PR +DV++ G Sbjct: 3 RIIDWARNRSPWILHMNCGSCNGCDIETLDALMPRYDVERFGIQQKDTPRHADVLVATGP 62 Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP 161 +T +MA L R+Y+QMPEP+ VI+ GSCA GG + Y+ G D ++PVD+YVPGCP Sbjct: 63 VTKQMAPRLERIYEQMPEPKLVIAAGSCAATGGVFQDCYNCHEGIDDVIPVDMYVPGCPI 122 Query: 162 TAEALIYGILLLQKKIRRVGNVK 184 + E LI GI+ L ++ + + Sbjct: 123 SPETLIDGIVALLEEAGQEAKAE 145 >gi|240102096|ref|YP_002958404.1| membrane bound hydrogenase, MbhJ subunit (MbhJ) [Thermococcus gammatolerans EJ3] gi|239909649|gb|ACS32540.1| membrane bound hydrogenase, MbhJ subunit (MbhJ) [Thermococcus gammatolerans EJ3] Length = 174 Score = 175 bits (445), Expect = 2e-42, Method: Composition-based stats. Identities = 51/154 (33%), Positives = 87/154 (56%), Gaps = 4/154 (2%) Query: 30 SSEITHKGFLVTSVDQLVTWARTGSLMWMT---FGLACCAVEMMQASMPRYDLERFGFAP 86 S + + L + QL + S C +E++ PRYD ERFG Sbjct: 10 GSNSSERERLEKRIAQLCRYIGR-SPWVFHVNTGSCNGCDIEIIAILTPRYDAERFGVKL 68 Query: 87 RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGC 146 SPR +D+++V G +TN+ ++ VY+Q P+P+ V+++G+CA GGG ++ S Sbjct: 69 VGSPRHADILLVTGPVTNQSLERVKLVYEQTPDPKIVVAVGACATGGGVFYESPFTNAPL 128 Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 ++PVD+YVPGCPP EA+++G++L +K+ ++ Sbjct: 129 SNVIPVDVYVPGCPPRPEAILHGVVLALEKLAKI 162 >gi|254168030|ref|ZP_04874878.1| NADH-quinone oxidoreductase, B subunit subfamily [Aciduliprofundum boonei T469] gi|254168134|ref|ZP_04874981.1| NADH-quinone oxidoreductase, B subunit subfamily [Aciduliprofundum boonei T469] gi|289596054|ref|YP_003482750.1| NADH-quinone oxidoreductase, B subunit [Aciduliprofundum boonei T469] gi|197622900|gb|EDY35468.1| NADH-quinone oxidoreductase, B subunit subfamily [Aciduliprofundum boonei T469] gi|197623073|gb|EDY35640.1| NADH-quinone oxidoreductase, B subunit subfamily [Aciduliprofundum boonei T469] gi|289533841|gb|ADD08188.1| NADH-quinone oxidoreductase, B subunit [Aciduliprofundum boonei T469] Length = 180 Score = 175 bits (445), Expect = 2e-42, Method: Composition-based stats. Identities = 55/126 (43%), Positives = 78/126 (61%) Query: 52 TGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALR 111 SL + F C A+EM RYD+ERFG P A+PRQ+D+M+V G + K + Sbjct: 24 RRSLWMIHFCTGCGAMEMPPVMTSRYDMERFGIIPMATPRQADLMLVTGYVATKTLKRIV 83 Query: 112 RVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171 RVY+QM +P+YVI+ GSC GG Y SY++++ D+ +PVD+Y+ GC P EA++ L Sbjct: 84 RVYEQMQDPKYVIAFGSCPINGGIYWDSYNIIKRLDKYIPVDLYIAGCMPRPEAIMDAFL 143 Query: 172 LLQKKI 177 L K I Sbjct: 144 KLMKDI 149 >gi|254173172|ref|ZP_04879845.1| hydrogenase-4 component I [Thermococcus sp. AM4] gi|214032581|gb|EEB73410.1| hydrogenase-4 component I [Thermococcus sp. AM4] Length = 173 Score = 175 bits (445), Expect = 2e-42, Method: Composition-based stats. Identities = 53/154 (34%), Positives = 87/154 (56%), Gaps = 4/154 (2%) Query: 30 SSEITHKGFLVTSVDQLVTWARTGSLMWMT---FGLACCAVEMMQASMPRYDLERFGFAP 86 +S + + L + QL + S C +E++ A PRYD ERFG Sbjct: 9 NSNSSERERLEKRIAQLCRYIGK-SPWVFHVNTGSCNGCDIEIIAALTPRYDAERFGVKL 67 Query: 87 RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGC 146 SPR +D+++V G +TN+ ++ VY+Q PEP+ VI++GSC GG ++ S Sbjct: 68 VGSPRHADILLVTGPVTNQSLERVKLVYEQTPEPKIVIAVGSCPTGGSVFYESPFTNAPL 127 Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 ++PVD+YVPGCPP EA+++G++L +K+ ++ Sbjct: 128 SNVIPVDVYVPGCPPRPEAILHGVVLALEKLAKI 161 >gi|161870822|ref|YP_001599995.1| NADH dehydrogenase I chain B [Neisseria meningitidis 053442] gi|161596375|gb|ABX74035.1| NADH dehydrogenase I chain B [Neisseria meningitidis 053442] Length = 124 Score = 175 bits (444), Expect = 2e-42, Method: Composition-based stats. Identities = 85/118 (72%), Positives = 98/118 (83%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 + KGF+ TS D ++ + RTGSL +TFGLACCAVEMM A M RYDL+RFG R SPRQ Sbjct: 6 VLKKGFITTSADTVLNYMRTGSLWPVTFGLACCAVEMMHAGMARYDLDRFGIIFRPSPRQ 65 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150 +D+MIV GTLTNKMA ALRRVYDQ+ EPR+V+SMGSCANGGGYYHYSYSVVRG DR+V Sbjct: 66 ADLMIVRGTLTNKMAPALRRVYDQLAEPRWVLSMGSCANGGGYYHYSYSVVRGADRVV 123 >gi|88603826|ref|YP_504004.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Methanospirillum hungatei JF-1] gi|88189288|gb|ABD42285.1| Membrane bound hydrogenase subunit mbhJ [Methanospirillum hungatei JF-1] Length = 145 Score = 175 bits (444), Expect = 3e-42, Method: Composition-based stats. Identities = 52/133 (39%), Positives = 81/133 (60%), Gaps = 3/133 (2%) Query: 53 GSLMWMT---FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASA 109 SL C +E++ A PRYD ERFG SPR +DV++V G +T++M Sbjct: 9 RSLWVFHVNSGSCNGCDIEIVAALCPRYDPERFGIKLVGSPRHADVLLVTGPVTHQMRDR 68 Query: 110 LRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYG 169 ++RVY+QM P+ V+ +G+C GG ++ SY++ D+++PVD+YVPGC P EA+IYG Sbjct: 69 VKRVYEQMAAPKVVMCVGTCGQSGGVFYDSYNLDGPIDQVIPVDVYVPGCAPRPEAIIYG 128 Query: 170 ILLLQKKIRRVGN 182 ++ K+ R+ Sbjct: 129 VVQAIAKLERLEK 141 >gi|14520931|ref|NP_126406.1| CO-induced hydrogenase related, subunit L [Pyrococcus abyssi GE5] gi|5458148|emb|CAB49637.1| NADH ubiquinone oxidoreductase subunit [Pyrococcus abyssi GE5] Length = 170 Score = 175 bits (444), Expect = 3e-42, Method: Composition-based stats. Identities = 53/156 (33%), Positives = 90/156 (57%), Gaps = 4/156 (2%) Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMT---FGLACCAVEMMQASMPRYDLERFGF 84 ++ ++ + L + QL + S C +E++ A PRYD ERFG Sbjct: 4 KLPAQTEERKRLERRIAQLCRFIGR-SPWVFHVNSGSCNGCDIEIIAALTPRYDAERFGV 62 Query: 85 APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR 144 SPR +D+++V G +TN+ ++ VY+Q PEP+ VI++GSC GG ++ S Sbjct: 63 KLVGSPRHADILLVTGPVTNQSLERVKLVYEQTPEPKIVIAIGSCPTGGSVFYESPFTNA 122 Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 DR++PVD++VPGCPP EA+++G++L +K+ ++ Sbjct: 123 PLDRVIPVDVFVPGCPPRPEAILHGVVLALEKLAKM 158 >gi|323700400|ref|ZP_08112312.1| NADH dehydrogenase (quinone) [Desulfovibrio sp. ND132] gi|323460332|gb|EGB16197.1| NADH dehydrogenase (quinone) [Desulfovibrio desulfuricans ND132] Length = 147 Score = 175 bits (443), Expect = 3e-42, Method: Composition-based stats. Identities = 53/129 (41%), Positives = 82/129 (63%), Gaps = 3/129 (2%) Query: 46 LVTWARTGSLMWMTF---GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL 102 + +R S M F C +E++ P YD+ERFG +P+ +DV++V GT+ Sbjct: 5 FIKKSRAKSPWIMHFDCGSCNGCDIEVLACLTPLYDVERFGIVHVGNPKHADVLLVTGTV 64 Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162 ++ L+ +YDQMPEP+ VI++GSC N GG + +Y+VV G D+++PVD+YVPGCP Sbjct: 65 NHRNKKVLKNLYDQMPEPKAVIAIGSCGNTGGIFREAYNVVGGVDKVIPVDVYVPGCPAK 124 Query: 163 AEALIYGIL 171 EA+I G++ Sbjct: 125 PEAIIDGVV 133 >gi|260575431|ref|ZP_05843430.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Rhodobacter sp. SW2] gi|259022351|gb|EEW25648.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Rhodobacter sp. SW2] Length = 177 Score = 175 bits (443), Expect = 3e-42, Method: Composition-based stats. Identities = 62/176 (35%), Positives = 93/176 (52%), Gaps = 7/176 (3%) Query: 10 IISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVE 68 ++ G L ++ E + + +L R+ S+ + G C +E Sbjct: 5 LLQGLLRRPLTDKAPKVDPLAVEELGEAVKFAAYRRL---GRSLSIRQVDAGSCNGCELE 61 Query: 69 MMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGS 128 + S P YDLERFG ASPR +DV++V G +T MA AL R Y PEP++V++ G Sbjct: 62 INALSNPYYDLERFGLHFVASPRHADVLLVTGPVTRNMAEALERTYAATPEPKWVVACGD 121 Query: 129 CANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 CA GG + SY++V G ++PVD+++PGCPP AL+ G+L L I R G + Sbjct: 122 CARDGGCFAGSYAIVGGVAAVLPVDLHIPGCPPNPTALLQGLLAL---IERAGTAR 174 >gi|303327574|ref|ZP_07358015.1| carbon monoxide-induced hydrogenase, CooL subunit [Desulfovibrio sp. 3_1_syn3] gi|302862514|gb|EFL85447.1| carbon monoxide-induced hydrogenase, CooL subunit [Desulfovibrio sp. 3_1_syn3] Length = 187 Score = 175 bits (443), Expect = 3e-42, Method: Composition-based stats. Identities = 50/132 (37%), Positives = 84/132 (63%), Gaps = 3/132 (2%) Query: 43 VDQLVTWARTGSLMWMTF---GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVA 99 +D ++ +R S + F C +E++ P YD+ERFG +P+ +DV++V Sbjct: 4 LDAMIKRSRLKSPWIIHFDCGSCNGCDIEVLACLTPMYDVERFGVVNTGNPKHADVLLVT 63 Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGC 159 GT+ ++ LR++YDQMPEP+ V+S+G+C GG + SY+++ G ++PVD++VPGC Sbjct: 64 GTVNHRNRHVLRQIYDQMPEPKAVVSIGACNLSGGVFKDSYNILNGAYNVIPVDVFVPGC 123 Query: 160 PPTAEALIYGIL 171 PP EA+I G++ Sbjct: 124 PPKPEAIIDGVV 135 >gi|220904936|ref|YP_002480248.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219869235|gb|ACL49570.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 185 Score = 175 bits (443), Expect = 3e-42, Method: Composition-based stats. Identities = 49/133 (36%), Positives = 84/133 (63%), Gaps = 3/133 (2%) Query: 43 VDQLVTWARTGSLMWMTF---GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVA 99 VD+++ +R S + F C +E++ P YD+ERFG +P+ +DV++V Sbjct: 4 VDKMIKRSRLKSPWIVHFDCGSCNGCDIEVLACLTPMYDVERFGVVNAGNPKHADVLLVT 63 Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGC 159 GT+ ++ L+++Y+QMP P+ VIS+G+C GG + +Y+V+ G ++PVD++VPGC Sbjct: 64 GTVNHRNRHVLKQIYEQMPSPKAVISLGACNLSGGVFKDTYNVLNGAHNVIPVDVFVPGC 123 Query: 160 PPTAEALIYGILL 172 PP EA+I G++ Sbjct: 124 PPKPEAIIDGVVE 136 >gi|218886615|ref|YP_002435936.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|193479935|gb|ACF17988.1| EchC [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218757569|gb|ACL08468.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 157 Score = 175 bits (443), Expect = 3e-42, Method: Composition-based stats. Identities = 47/139 (33%), Positives = 83/139 (59%), Gaps = 3/139 (2%) Query: 43 VDQLVTWARTGSLMWMTF---GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVA 99 ++ + R S + F C +E++ P +D+ERFG +P+ +DV++V Sbjct: 4 LENWINKGRLKSPWVVHFDCGSCNGCDIEVLACLTPVFDVERFGIINVGNPKHADVLLVT 63 Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGC 159 GT+ ++ L+ +YDQMP+P+ VI++G+C GG + Y+VV G D+++PVD+YVPGC Sbjct: 64 GTVNHRNKKVLKNIYDQMPDPKAVIAIGACGTSGGVFRECYNVVGGVDQVIPVDVYVPGC 123 Query: 160 PPTAEALIYGILLLQKKIR 178 P +A+I G++ ++ Sbjct: 124 PAKPDAIIDGVVTALDVVK 142 >gi|260892452|ref|YP_003238549.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Ammonifex degensii KC4] gi|260864593|gb|ACX51699.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Ammonifex degensii KC4] Length = 143 Score = 174 bits (442), Expect = 4e-42, Method: Composition-based stats. Identities = 51/136 (37%), Positives = 84/136 (61%), Gaps = 3/136 (2%) Query: 46 LVTWARTGSLMWMTFG---LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL 102 L+T AR S + F C +E++ P YD+ERFG +P+ +D+++V G Sbjct: 3 LLTKARVKSPWLLHFCSGSCNGCDIEILACLTPYYDVERFGILHMGNPKHADILLVTGPA 62 Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162 + L+ +Y QMP+P+ V+++G+CA GG +H Y+++ G D+++PVD+YVPGC Sbjct: 63 NRRNYKVLQNLYAQMPDPKVVVAVGTCACTGGIFHNCYNIMGGIDKVIPVDVYVPGCAAR 122 Query: 163 AEALIYGILLLQKKIR 178 EA+I G++L KK+R Sbjct: 123 PEAIIDGVVLALKKLR 138 >gi|153869972|ref|ZP_01999467.1| NADH-plastoquinone oxidoreductase subunit K [Beggiatoa sp. PS] gi|152073562|gb|EDN70533.1| NADH-plastoquinone oxidoreductase subunit K [Beggiatoa sp. PS] Length = 250 Score = 174 bits (442), Expect = 4e-42, Method: Composition-based stats. Identities = 54/170 (31%), Positives = 90/170 (52%) Query: 10 IISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEM 69 +I+ + + + D S + + + L +D++ R+ SL + + C A+E+ Sbjct: 1 MIATNTIPVSSEPNTDISCRTIDPQERSMLRKVIDRIADRCRSRSLFILHYCTGCGAIEL 60 Query: 70 MQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSC 129 R+D ER G P +PRQ+D++++ G L+ K + Y+QM P+YVI MGSC Sbjct: 61 PPTITSRFDAERLGIQPMVTPRQADILLITGYLSVKTLKRVILSYEQMQAPKYVIGMGSC 120 Query: 130 ANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179 GG Y +SY+ V+ +PVD+Y+ GC P EA++ G L L I + Sbjct: 121 TINGGMYWHSYATVKRLQEYMPVDMYMAGCMPRPEAILEGFLQLIDNIDK 170 >gi|312877215|ref|ZP_07737184.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Caldicellulosiruptor lactoaceticus 6A] gi|311796024|gb|EFR12384.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Caldicellulosiruptor lactoaceticus 6A] Length = 154 Score = 174 bits (441), Expect = 6e-42, Method: Composition-based stats. Identities = 47/138 (34%), Positives = 83/138 (60%), Gaps = 7/138 (5%) Query: 52 TGSLMWMTF---GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108 S + + C +E++ P YD+ERFG +P+ +D+++V+G++ ++ A Sbjct: 8 KKSPWIVHYDCNSCNGCDIEILATLTPVYDVERFGIINVGNPKHADILVVSGSVNHRNAR 67 Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168 L+ +Y+QMP P+ V+++G+CA GG + Y+ + G D +VPVD+YVPGC P EA++ Sbjct: 68 VLKTIYEQMPHPKAVVAIGACACSGGIFKECYNTLGGADTVVPVDVYVPGCAPRPEAIME 127 Query: 169 GILL----LQKKIRRVGN 182 GIL L++K + + Sbjct: 128 GILKAAQLLEEKKKNMKK 145 >gi|312793271|ref|YP_004026194.1| NADH ubiquinone oxidoreductase 20 kda subunit [Caldicellulosiruptor kristjanssonii 177R1B] gi|312180411|gb|ADQ40581.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Caldicellulosiruptor kristjanssonii 177R1B] Length = 154 Score = 174 bits (441), Expect = 6e-42, Method: Composition-based stats. Identities = 47/138 (34%), Positives = 83/138 (60%), Gaps = 7/138 (5%) Query: 52 TGSLMWMTF---GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108 S + + C +E++ P YD+ERFG +P+ +D+++V+G++ ++ A Sbjct: 8 KKSPWIVHYDCNSCNGCDIEILATLTPVYDVERFGIINVGNPKHADILVVSGSVNHRNAR 67 Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168 L+ +Y+QMP P+ V+++G+CA GG + Y+ + G D +VPVD+YVPGC P EA++ Sbjct: 68 VLKTIYEQMPHPKAVVAIGACACSGGIFKECYNTLGGADTVVPVDVYVPGCAPRPEAIME 127 Query: 169 GILL----LQKKIRRVGN 182 GIL L++K + + Sbjct: 128 GILKAAQLLEEKKKNIKK 145 >gi|222529076|ref|YP_002572958.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Caldicellulosiruptor bescii DSM 6725] gi|312134931|ref|YP_004002269.1| NADH ubiquinone oxidoreductase 20 kda subunit [Caldicellulosiruptor owensensis OL] gi|312622668|ref|YP_004024281.1| NADH ubiquinone oxidoreductase 20 kda subunit [Caldicellulosiruptor kronotskyensis 2002] gi|222455923|gb|ACM60185.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Caldicellulosiruptor bescii DSM 6725] gi|311774982|gb|ADQ04469.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Caldicellulosiruptor owensensis OL] gi|312203135|gb|ADQ46462.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Caldicellulosiruptor kronotskyensis 2002] Length = 154 Score = 174 bits (441), Expect = 6e-42, Method: Composition-based stats. Identities = 47/138 (34%), Positives = 83/138 (60%), Gaps = 7/138 (5%) Query: 52 TGSLMWMTF---GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108 S + + C +E++ P YD+ERFG +P+ +D+++V+G++ ++ A Sbjct: 8 KKSPWIVHYDCNSCNGCDIEILATLTPVYDVERFGIINVGNPKHADILVVSGSVNHRNAR 67 Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168 L+ +Y+QMP P+ V+++G+CA GG + Y+ + G D +VPVD+YVPGC P EA++ Sbjct: 68 VLKTIYEQMPHPKAVVAIGACACSGGIFKECYNTLGGADTVVPVDVYVPGCAPRPEAIME 127 Query: 169 GILL----LQKKIRRVGN 182 GIL L++K + + Sbjct: 128 GILKAAQLLEEKKKNMKK 145 >gi|319789460|ref|YP_004151093.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Thermovibrio ammonificans HB-1] gi|317113962|gb|ADU96452.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Thermovibrio ammonificans HB-1] Length = 177 Score = 174 bits (441), Expect = 6e-42, Method: Composition-based stats. Identities = 51/135 (37%), Positives = 81/135 (60%), Gaps = 3/135 (2%) Query: 51 RTGSLMWMTF---GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMA 107 R S + + C +E++ P+YDLERFG R +P+QSDV+IV G +T + Sbjct: 7 RKKSPWLLHYNTGSCNGCDIEILACLAPKYDLERFGILNRGNPKQSDVLIVTGPVTKRAK 66 Query: 108 SALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALI 167 L R+Y +MPEP+ V+++G+CA GG + + Y+V G D ++PVD+YVPGC E++I Sbjct: 67 ERLLRLYYEMPEPKVVVAVGACACTGGVFRHMYNVENGVDSVIPVDVYVPGCAARPESII 126 Query: 168 YGILLLQKKIRRVGN 182 G++ + + R Sbjct: 127 DGVIKALEILERKKK 141 >gi|126460561|ref|YP_001056839.1| NADH-quinone oxidoreductase, B subunit [Pyrobaculum calidifontis JCM 11548] gi|126250282|gb|ABO09373.1| NADH-quinone oxidoreductase, B subunit [Pyrobaculum calidifontis JCM 11548] Length = 192 Score = 173 bits (440), Expect = 6e-42, Method: Composition-based stats. Identities = 58/138 (42%), Positives = 86/138 (62%), Gaps = 1/138 (0%) Query: 41 TSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAG 100 ++ L W SL + +CC VE+ S P +D ER+G P + RQS+V++V G Sbjct: 15 AKLEPLFKWGVRWSLWPVHLVTSCCGVEVAHTSAPGFDAERWGVLPFHTMRQSNVILVEG 74 Query: 101 TLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCP 160 T+T KMA L++VY+QMPEP++VI+MG+CA GG + SY VV+ + +Y+ GCP Sbjct: 75 TVTKKMAKVLKQVYEQMPEPKFVIAMGACAVRGGLFWNSYHVVQVDTVVPVD-VYIAGCP 133 Query: 161 PTAEALIYGILLLQKKIR 178 PT EA+I ++L KI+ Sbjct: 134 PTPEAVIRAFIMLHNKIK 151 >gi|332796230|ref|YP_004457730.1| NADH-quinone oxidoreductase subunit B [Acidianus hospitalis W1] gi|332693965|gb|AEE93432.1| NADH-quinone oxidoreductase, B subunit [Acidianus hospitalis W1] Length = 170 Score = 173 bits (440), Expect = 7e-42, Method: Composition-based stats. Identities = 64/144 (44%), Positives = 90/144 (62%) Query: 41 TSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAG 100 + L W SL F +CC E + R+D ERFG P +S RQS+++++ G Sbjct: 26 KPIRDLRDWGTAFSLWPPHFTTSCCGAEFGAFAAARFDAERFGMLPFSSSRQSNILVIEG 85 Query: 101 TLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCP 160 T+T KMA A R VY+QMPEP+YV+++G+C+ GG + SY+ V + +PVDIYVPGCP Sbjct: 86 TMTRKMARAARIVYEQMPEPKYVMAIGACSLEGGIFWNSYNTVLPSEVGIPVDIYVPGCP 145 Query: 161 PTAEALIYGILLLQKKIRRVGNVK 184 EA+ G+L+LQKKIR +K Sbjct: 146 IRPEAIARGLLMLQKKIRHQSTIK 169 >gi|302872081|ref|YP_003840717.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Caldicellulosiruptor obsidiansis OB47] gi|312127862|ref|YP_003992736.1| NADH ubiquinone oxidoreductase 20 kda subunit [Caldicellulosiruptor hydrothermalis 108] gi|302574940|gb|ADL42731.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Caldicellulosiruptor obsidiansis OB47] gi|311777881|gb|ADQ07367.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Caldicellulosiruptor hydrothermalis 108] Length = 154 Score = 173 bits (440), Expect = 7e-42, Method: Composition-based stats. Identities = 48/138 (34%), Positives = 83/138 (60%), Gaps = 7/138 (5%) Query: 52 TGSLMWMTF---GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108 S + + C +E++ P YD+ERFG +P+ +D+++V+G++ ++ A Sbjct: 8 KKSPWIVHYDCNSCNGCDIEILATLTPVYDVERFGIINVGNPKHADILVVSGSVNHRNAR 67 Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168 L+ +YDQMP P+ V+++G+CA GG + Y+ + G D +VPVD+YVPGC P EA++ Sbjct: 68 VLKTIYDQMPHPKAVVAIGACACSGGIFKECYNTLGGADTVVPVDVYVPGCAPRPEAIME 127 Query: 169 GILL----LQKKIRRVGN 182 GIL L++K + + Sbjct: 128 GILKAAQLLEEKKKNMKK 145 >gi|332157667|ref|YP_004422946.1| NADH-ubiquinone oxidoreductase subunit [Pyrococcus sp. NA2] gi|331033130|gb|AEC50942.1| NADH-ubiquinone oxidoreductase subunit [Pyrococcus sp. NA2] Length = 172 Score = 173 bits (440), Expect = 7e-42, Method: Composition-based stats. Identities = 53/154 (34%), Positives = 87/154 (56%), Gaps = 4/154 (2%) Query: 30 SSEITHKGFLVTSVDQLVTWARTGSLMWMT---FGLACCAVEMMQASMPRYDLERFGFAP 86 +S + L + QL + S C +E++ A PRYD ERFG Sbjct: 9 NSNQEERRKLERRISQLCRFIGR-SPWVFHVNSGSCNGCDIEIIAALTPRYDAERFGVKL 67 Query: 87 RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGC 146 SPR +D+++V G +TN+ ++ VY+Q P+P+ VI++GSC GG ++ S Sbjct: 68 VGSPRHADILLVTGPVTNQSLERVKLVYEQTPDPKIVIAVGSCPTGGSVFYESPFTNAPL 127 Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 D ++PVD++VPGCPP EA++YG++L +K+ ++ Sbjct: 128 DNVIPVDVFVPGCPPRPEAILYGVVLALEKLAKI 161 >gi|169831261|ref|YP_001717243.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Candidatus Desulforudis audaxviator MP104C] gi|169638105|gb|ACA59611.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Candidatus Desulforudis audaxviator MP104C] Length = 141 Score = 173 bits (439), Expect = 1e-41, Method: Composition-based stats. Identities = 50/139 (35%), Positives = 84/139 (60%), Gaps = 3/139 (2%) Query: 46 LVTWARTGSLMWMTFG---LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL 102 L+ AR S + + C +E++ P YD+ERFG +P+ +D+++V G Sbjct: 3 LINKARVKSPWIVHYCAGSCNGCDIEILACLTPYYDVERFGILNIGNPKHADLLVVTGPA 62 Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162 + + L+ +YDQMPEP+ V+++G+CA GG +H Y+++ G DR++PVD+YVPGC Sbjct: 63 NMRCSRVLKNLYDQMPEPKLVMAVGACAATGGVFHNCYNILGGIDRVIPVDVYVPGCAAR 122 Query: 163 AEALIYGILLLQKKIRRVG 181 EA+I G++L K+ + Sbjct: 123 PEAIIDGVVLALDKLSNIK 141 >gi|18977804|ref|NP_579161.1| mbh10 NADH dehydrogenase subunit [Pyrococcus furiosus DSM 3638] gi|18893553|gb|AAL81556.1| mbh10 NADH dehydrogenase subunit (like cCoL, EchC, HycH) [Pyrococcus furiosus DSM 3638] Length = 167 Score = 173 bits (438), Expect = 1e-41, Method: Composition-based stats. Identities = 52/150 (34%), Positives = 87/150 (58%), Gaps = 4/150 (2%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMT---FGLACCAVEMMQASMPRYDLERFGFAPRASP 90 + + L + QL + S C +E++ A PRYD ERFG SP Sbjct: 5 SERKRLEKRIAQLCKFIGR-SPWVFHVNSGSCNGCDIEIIAALTPRYDAERFGVKLVGSP 63 Query: 91 RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150 R +D+++V G +TN+ ++ VY+Q P+P+ VI++G+C GG ++ S DRI+ Sbjct: 64 RHADILLVTGPVTNQSLERVKLVYEQTPDPKIVIAIGACPTGGSVFYESPFTNAPLDRII 123 Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 PVD++VPGCPP EA+++G++L +K+ ++ Sbjct: 124 PVDVFVPGCPPRPEAILHGVVLALEKLAKM 153 >gi|119719977|ref|YP_920472.1| NADH-quinone oxidoreductase, B subunit [Thermofilum pendens Hrk 5] gi|119525097|gb|ABL78469.1| NADH-quinone oxidoreductase, B subunit [Thermofilum pendens Hrk 5] Length = 142 Score = 173 bits (438), Expect = 1e-41, Method: Composition-based stats. Identities = 53/123 (43%), Positives = 78/123 (63%), Gaps = 3/123 (2%) Query: 51 RTGSLMWMTF---GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMA 107 R SL F G C +E + A PR+DLER G SPR +DV++V G +T A Sbjct: 8 RRKSLWVYHFNSGGCNGCDIEFVAALTPRFDLERLGVQLVPSPRHADVLVVTGPVTRASA 67 Query: 108 SALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALI 167 AL+ +YDQ+PEPR V++ G+CA GG + Y+V+ G D+++PVD+ +PGCPP E+L+ Sbjct: 68 DALKTIYDQVPEPRIVVAFGTCACSGGVFSNCYNVLGGADKVLPVDVKIPGCPPKPESLL 127 Query: 168 YGI 170 + + Sbjct: 128 HAL 130 >gi|154250405|ref|YP_001411230.1| NADH dehydrogenase subunit B [Fervidobacterium nodosum Rt17-B1] gi|154154341|gb|ABS61573.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Fervidobacterium nodosum Rt17-B1] Length = 181 Score = 173 bits (438), Expect = 1e-41, Method: Composition-based stats. Identities = 53/149 (35%), Positives = 83/149 (55%), Gaps = 4/149 (2%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP 90 S+I + DQL R+ S+ + + C AVE+ + R+D+ER G P A+P Sbjct: 2 SKIDERSVWEKIADQL----RSRSMWMLHYCTGCGAVELPPSMTSRFDMERLGMGPMATP 57 Query: 91 RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150 RQ+D+ ++ G L+ K + Y++M +P+YVI GSC GG Y+ SYS + D + Sbjct: 58 RQADIFLITGYLSAKTLRRVIYTYEKMADPKYVIGFGSCTINGGIYYDSYSTINRLDYYI 117 Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRR 179 PVD+Y+ GC P EA++ L + IR+ Sbjct: 118 PVDLYIAGCMPRPEAILNAFNQLMEMIRK 146 >gi|224372676|ref|YP_002607048.1| hydrogenase-4 component I [Nautilia profundicola AmH] gi|223589154|gb|ACM92890.1| hydrogenase-4 component I [Nautilia profundicola AmH] Length = 164 Score = 173 bits (438), Expect = 1e-41, Method: Composition-based stats. Identities = 55/137 (40%), Positives = 85/137 (62%), Gaps = 3/137 (2%) Query: 51 RTGSLMWMTF---GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMA 107 R S + + G C +E++ A P+YD+ERFG R +P+QSD+++V G +T + Sbjct: 8 RKKSPWILHYNTGGCNGCDIEILAALAPKYDIERFGMLNRGNPKQSDILLVTGPVTKRCR 67 Query: 108 SALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALI 167 LRR+Y +MPEP+ V++MG+CA+GGG + Y V G D I+PVD+++PGC P EA+I Sbjct: 68 DVLRRLYLEMPEPKVVVAMGACAHGGGIFRDFYHVENGVDNIIPVDVWIPGCAPRVEAVI 127 Query: 168 YGILLLQKKIRRVGNVK 184 G++ K + K Sbjct: 128 DGMVEAVKIWEKKTKEK 144 >gi|149194384|ref|ZP_01871481.1| NADH:ubiquinone oxidoreductase 20 kD subunit and related Fe-S oxidoreductase [Caminibacter mediatlanticus TB-2] gi|149135559|gb|EDM24038.1| NADH:ubiquinone oxidoreductase 20 kD subunit and related Fe-S oxidoreductase [Caminibacter mediatlanticus TB-2] Length = 164 Score = 173 bits (438), Expect = 1e-41, Method: Composition-based stats. Identities = 53/125 (42%), Positives = 81/125 (64%), Gaps = 3/125 (2%) Query: 51 RTGSLMWMTF---GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMA 107 R S + + G C +E++ P+YD+ERFG R +P+QSD+++V G +T Sbjct: 8 RKKSPWILHYNTGGCNGCDIEILATLAPKYDIERFGALNRGNPKQSDILLVTGPVTMHCK 67 Query: 108 SALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALI 167 LRR+Y +MPEP+ V++MG+C +GGG + + Y+V G D I+PVD+++PGC P EALI Sbjct: 68 DVLRRLYLEMPEPKVVVAMGACGHGGGVFRHLYNVNDGVDSIIPVDVWIPGCCPRPEALI 127 Query: 168 YGILL 172 GI+ Sbjct: 128 DGIVE 132 >gi|217077746|ref|YP_002335464.1| NADH dehydrogenase subunit B [Thermosipho africanus TCF52B] gi|217037601|gb|ACJ76123.1| NADH dehydrogenase beta subunit [Thermosipho africanus TCF52B] Length = 180 Score = 172 bits (437), Expect = 2e-41, Method: Composition-based stats. Identities = 54/147 (36%), Positives = 81/147 (55%), Gaps = 4/147 (2%) Query: 32 EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPR 91 + +G DQL R+ SL + + C A+E+ + R+D+ERFG P A+PR Sbjct: 2 KTNERGIWEKIADQL----RSKSLWMLYYCTGCGAIELPPSMTSRFDMERFGMGPMATPR 57 Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151 Q+D++ + G L+ K + Y+ M EP+YV+ GSC GG Y+ SY+ + D +P Sbjct: 58 QTDILFITGYLSTKTLRRVIYTYEMMSEPKYVVGFGSCTLNGGIYYDSYATINKLDNYIP 117 Query: 152 VDIYVPGCPPTAEALIYGILLLQKKIR 178 VD+Y+ GC P EAL+ L K IR Sbjct: 118 VDLYIAGCMPRPEALLNAFNELMKMIR 144 >gi|146296549|ref|YP_001180320.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145410125|gb|ABP67129.1| ech hydrogenase subunit C [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 154 Score = 172 bits (437), Expect = 2e-41, Method: Composition-based stats. Identities = 47/138 (34%), Positives = 83/138 (60%), Gaps = 7/138 (5%) Query: 52 TGSLMWMTF---GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108 S + + C +E++ P YD+ERFG +P+ +D+++V+G++ ++ A Sbjct: 8 KKSPWIIHYDCNSCNGCDIEILSTLTPVYDVERFGIINVGNPKHADILVVSGSVNHRNAR 67 Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168 L+ +YDQMP P+ V+++G+CA GG + Y+ + G D ++PVD+YVPGC P EA++ Sbjct: 68 VLKNIYDQMPHPKAVVAIGACACSGGIFKECYNTLGGADTVIPVDVYVPGCAPRPEAIME 127 Query: 169 GILL----LQKKIRRVGN 182 GIL L++K + + Sbjct: 128 GILKAAEILEEKKKNMKK 145 >gi|307353719|ref|YP_003894770.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanoplanus petrolearius DSM 11571] gi|307156952|gb|ADN36332.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanoplanus petrolearius DSM 11571] Length = 145 Score = 172 bits (437), Expect = 2e-41, Method: Composition-based stats. Identities = 52/135 (38%), Positives = 78/135 (57%), Gaps = 3/135 (2%) Query: 53 GSLMWMTF---GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASA 109 SL F C +E++ MPR+D ERFG SPR +DV++V G + + M Sbjct: 9 RSLWVFHFNSGSCNGCDIEIVATLMPRHDPERFGIKLVGSPRHADVLLVTGPVVHAMKER 68 Query: 110 LRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYG 169 L RVY+QM +P+ VI +G+C GG ++ SY++ ++PVD+YVPGC P EA+I G Sbjct: 69 LIRVYEQMADPKVVICVGACGQSGGVFYDSYNLDGPVGEVIPVDVYVPGCAPRPEAIING 128 Query: 170 ILLLQKKIRRVGNVK 184 ++ K+ R+ K Sbjct: 129 VVKAIAKLERLQEGK 143 >gi|124485778|ref|YP_001030394.1| membrane bound hydrogenase subunit mbhJ [Methanocorpusculum labreanum Z] gi|124363319|gb|ABN07127.1| Membrane bound hydrogenase subunit mbhJ [Methanocorpusculum labreanum Z] Length = 143 Score = 172 bits (436), Expect = 2e-41, Method: Composition-based stats. Identities = 57/135 (42%), Positives = 80/135 (59%), Gaps = 3/135 (2%) Query: 53 GSLMWMTF---GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASA 109 SL F C +E++ PRYD ERFG SPR +DV++V G +TN+MA Sbjct: 9 KSLWVFHFNAGSCNGCDIEIVATLTPRYDPERFGVKLVGSPRHADVLLVTGPVTNQMADR 68 Query: 110 LRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYG 169 LRRVY QM P+ V+ +G+C GG + SY++ D+I+PVD+YVPGC P EA+I G Sbjct: 69 LRRVYAQMAGPKVVMVVGTCGQSGGVFSTSYNLAGPVDQIIPVDVYVPGCAPRPEAIING 128 Query: 170 ILLLQKKIRRVGNVK 184 ++ K+ R+ K Sbjct: 129 VVTAIAKLERLEGGK 143 >gi|315231237|ref|YP_004071673.1| NADH-ubiquinone oxidoreductase subunit B [Thermococcus barophilus MP] gi|315184265|gb|ADT84450.1| NADH-ubiquinone oxidoreductase chain B [Thermococcus barophilus MP] Length = 148 Score = 172 bits (436), Expect = 2e-41, Method: Composition-based stats. Identities = 53/131 (40%), Positives = 78/131 (59%), Gaps = 5/131 (3%) Query: 45 QLVTWARTGSLMWMT---FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGT 101 +L + R SL C +E++ PRYD+ERFG SPR +DV++V G Sbjct: 3 KLTNFKR--SLWVFHASGGSCNACDIEIVALLTPRYDVERFGIKLAGSPRHADVLLVTGA 60 Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP 161 + A LRR+Y+QMP+P+ VI +G+C GG ++ SY++ D I+PVD+YVPGCPP Sbjct: 61 IPRDFADKLRRIYEQMPDPKAVIVVGNCGTSGGVFYDSYNIAGPIDEIIPVDVYVPGCPP 120 Query: 162 TAEALIYGILL 172 EA+I ++ Sbjct: 121 RPEAIIDAVVK 131 >gi|239618414|ref|YP_002941736.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Kosmotoga olearia TBF 19.5.1] gi|239507245|gb|ACR80732.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Kosmotoga olearia TBF 19.5.1] Length = 179 Score = 172 bits (435), Expect = 3e-41, Method: Composition-based stats. Identities = 51/139 (36%), Positives = 80/139 (57%) Query: 41 TSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAG 100 ++ +++ R SL + + C A+E+ R+D+ERFG P A+PRQ+D++++ G Sbjct: 6 SAWNKVANMLRARSLWMLYYCTGCGAIELPPTMTARFDMERFGIGPMATPRQADILLITG 65 Query: 101 TLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCP 160 L+ K + Y+QM P+YV+ GSC GG Y SY+ + D +PVD+Y+ GC Sbjct: 66 YLSTKTLRRVIYTYEQMQAPKYVVGFGSCTINGGIYFDSYATINRLDLYLPVDLYLAGCM 125 Query: 161 PTAEALIYGILLLQKKIRR 179 P EA++ G L KKI R Sbjct: 126 PRPEAIVNGFKELMKKIDR 144 >gi|116255492|ref|YP_771325.1| putative formate hydrogenlyase subunit 7 [Rhizobium leguminosarum bv. viciae 3841] gi|115260140|emb|CAK03241.1| putative formate hydrogenlyase subunit 7 [Rhizobium leguminosarum bv. viciae 3841] Length = 177 Score = 171 bits (433), Expect = 4e-41, Method: Composition-based stats. Identities = 57/175 (32%), Positives = 91/175 (52%), Gaps = 9/175 (5%) Query: 10 IISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVE 68 I + DA + +++ I L R+ S+ + G C +E Sbjct: 10 IRPPLTELRPPVSDAAMTELAAAIERSARL--------RLGRSLSIRAVDAGSCNGCELE 61 Query: 69 MMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGS 128 M YD+ERFG ASPR +DV++V G +T M AL R Y P+P++V+++G Sbjct: 62 MHALGNTFYDIERFGLRFVASPRHADVLLVTGPVTRNMVQALERTYIATPDPKWVVALGD 121 Query: 129 CANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 C GG + SY+V+ G ++VPVD+++PGCPP+ ++ G+L L + + R G V Sbjct: 122 CGRDGGCFAGSYAVLGGVSKVVPVDLHIPGCPPSPMDILKGLLALLEDVNREGRV 176 >gi|66219963|gb|AAY42996.1| Nqo6 [Rhodothermus marinus] Length = 169 Score = 171 bits (433), Expect = 4e-41, Method: Composition-based stats. Identities = 69/129 (53%), Positives = 96/129 (74%), Gaps = 2/129 (1%) Query: 56 MWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVY 114 M M GLACCA+EMM + P+YD+ RFG R SPRQ+D+MIVAG + KMA A+RRV+ Sbjct: 1 MPMPMGLACCAIEMMAFAGPKYDVARFGSEAMRFSPRQADLMIVAGWCSYKMAHAIRRVW 60 Query: 115 DQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQ 174 DQMP+P++ I+MG+CA+ GG H Y VV+G D +PVD+Y+PGCPP EA+++ ++ +Q Sbjct: 61 DQMPDPKWCIAMGACASTGGM-HRCYGVVQGVDNFLPVDVYIPGCPPRPEAVLHALMDIQ 119 Query: 175 KKIRRVGNV 183 +KIR +V Sbjct: 120 EKIRNEYSV 128 >gi|21227166|ref|NP_633088.1| formate hydrogenlyase subunit 7 [Methanosarcina mazei Go1] gi|20905501|gb|AAM30760.1| Formate hydrogenlyase subunit 7 [Methanosarcina mazei Go1] Length = 170 Score = 171 bits (433), Expect = 4e-41, Method: Composition-based stats. Identities = 59/171 (34%), Positives = 93/171 (54%), Gaps = 2/171 (1%) Query: 10 IISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL-ACCAVE 68 +++ S KV F E+ G + V + + ++ + G +E Sbjct: 1 MVNPLSLFLRPKVTETFEFRDEELEALGAQIKKEIPKV-FGHSLAIRELDSGSDNSTEME 59 Query: 69 MMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGS 128 + P YD+ERFG + ASPR +DV++V G +T MA A ++ Y+ MP P+YVI++G Sbjct: 60 ISNLGNPHYDVERFGISFVASPRHADVLLVTGAVTLNMAEAAKKTYEAMPYPKYVIAVGD 119 Query: 129 CANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179 A GG Y SY+V+ G D+I+PVD+ +PG PP+ + ++ GI L KK R Sbjct: 120 DACDGGIYKGSYAVLGGVDKILPVDVKIPGNPPSPKEILQGIFALVKKARE 170 >gi|212223636|ref|YP_002306872.1| NADH dehydrogenase subunit B [Thermococcus onnurineus NA1] gi|212008593|gb|ACJ15975.1| nuoB NADH dehydrogenase I, subunit B [Thermococcus onnurineus NA1] Length = 190 Score = 170 bits (432), Expect = 6e-41, Method: Composition-based stats. Identities = 50/136 (36%), Positives = 77/136 (56%) Query: 43 VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL 102 + L +AR SL ++F C +EM RYDLERFG P SPRQ D+ ++ G + Sbjct: 7 FEPLFNYARKKSLWIVSFCTGCGGIEMPPLMTSRYDLERFGMIPDPSPRQYDLFLITGYV 66 Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162 T K + Y+ P+P+YV++ GSC GG Y +Y+ ++ D+ +PVD+ + GC P Sbjct: 67 TPKTLKRIIITYEMAPDPKYVLAHGSCPLNGGIYWDAYNAIKHLDKYIPVDVVIAGCMPR 126 Query: 163 AEALIYGILLLQKKIR 178 EA++ GI + + I Sbjct: 127 PEAVMDGIQKIMEMIE 142 >gi|288932068|ref|YP_003436128.1| NADH-quinone oxidoreductase subunit beta [Ferroglobus placidus DSM 10642] gi|288894316|gb|ADC65853.1| NADH-quinone oxidoreductase, B subunit [Ferroglobus placidus DSM 10642] Length = 356 Score = 170 bits (432), Expect = 7e-41, Method: Composition-based stats. Identities = 57/146 (39%), Positives = 80/146 (54%), Gaps = 5/146 (3%) Query: 32 EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPR 91 E HKG + L W S+ ACC VE+ A YD ER G R Sbjct: 6 EFLHKG----PLAPLKKWGTKFSIWPTHLVTACCGVELAHAFASGYDGERLGVLNFGMAR 61 Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151 Q++ ++V G +T KMA AL+ Y+QMP+P++VI MG+C GG + Y++V+ +VP Sbjct: 62 QTNCIVVEGAITRKMARALKITYEQMPDPKFVIVMGACGIKGGIFWNGYNMVKPF-EVVP 120 Query: 152 VDIYVPGCPPTAEALIYGILLLQKKI 177 V + PGCPPT E+L+ LQK+I Sbjct: 121 VKYFAPGCPPTPESLLRCFRSLQKEI 146 >gi|323706313|ref|ZP_08117879.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Thermoanaerobacterium xylanolyticum LX-11] gi|323534365|gb|EGB24150.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Thermoanaerobacterium xylanolyticum LX-11] Length = 157 Score = 170 bits (432), Expect = 7e-41, Method: Composition-based stats. Identities = 51/148 (34%), Positives = 84/148 (56%), Gaps = 7/148 (4%) Query: 43 VDQLVTWARTGSLMWMTF---GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVA 99 + + V + + S + + C +E++ P YD+ERFG +P+ +D++IV Sbjct: 3 LKEFVKKSFSKSPWVVHYDCGSCNGCDIEVLACMTPIYDMERFGMVNVGNPKHADILIVT 62 Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGC 159 GT+ K L+ VYD MP+P+ V++ G CA GG + Y+V+ G D+++PVD+YVPGC Sbjct: 63 GTVNEKNKDVLKNVYDMMPDPKVVVAAGICACSGGIFRDCYNVLGGIDKVIPVDVYVPGC 122 Query: 160 PPTAEALIYGILL----LQKKIRRVGNV 183 P EA+I G+ L++K R + Sbjct: 123 PAKPEAMIDGLYKAAQILKEKYSRKEVI 150 >gi|296242362|ref|YP_003649849.1| NADH-quinone oxidoreductase subunit B [Thermosphaera aggregans DSM 11486] gi|296094946|gb|ADG90897.1| NADH-quinone oxidoreductase, B subunit [Thermosphaera aggregans DSM 11486] Length = 155 Score = 170 bits (431), Expect = 7e-41, Method: Composition-based stats. Identities = 57/134 (42%), Positives = 81/134 (60%), Gaps = 3/134 (2%) Query: 52 TGSLMWMTF---GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108 S + F C +E++ + P YD ERFG S R D+++V G LT K Sbjct: 19 RYSPWLVHFNTGACNGCDIEVLASITPLYDPERFGVKLAPSIRHGDILVVTGALTKKAGE 78 Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168 LRR+YDQMP P++V+++G+CA GG ++ SYSV G D+ VPV +Y+PGCPP EA++ Sbjct: 79 RLRRLYDQMPNPKFVVAVGACAVDGGVFYKSYSVEGGADKAVPVAMYIPGCPPRPEAILD 138 Query: 169 GILLLQKKIRRVGN 182 GI+ L KK+ G Sbjct: 139 GIVKLLKKLEESGE 152 >gi|304315647|ref|YP_003850792.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302777149|gb|ADL67708.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 157 Score = 170 bits (431), Expect = 7e-41, Method: Composition-based stats. Identities = 51/148 (34%), Positives = 83/148 (56%), Gaps = 7/148 (4%) Query: 43 VDQLVTWARTGSLMWMTF---GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVA 99 + + V + + S + + C +E++ P YD+ERFG +P+ +D++IV Sbjct: 3 LKEFVKKSFSKSPWVVHYDCGSCNGCDIEVLACMTPIYDMERFGMVNVGNPKHADILIVT 62 Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGC 159 GT+ K L+ VYD MPEP+ V++ G CA GG + Y+V+ G D+++PVD+Y+PGC Sbjct: 63 GTVNEKNKDVLKNVYDMMPEPKVVVAAGICACSGGIFRDCYNVLGGIDKVIPVDVYIPGC 122 Query: 160 PPTAEALIYGILL----LQKKIRRVGNV 183 P EA+I G+ L+ K R + Sbjct: 123 PAKPEAMIDGLYKAAQILKDKYSRREVI 150 >gi|260462448|ref|ZP_05810655.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Mesorhizobium opportunistum WSM2075] gi|259031644|gb|EEW32913.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Mesorhizobium opportunistum WSM2075] Length = 179 Score = 170 bits (431), Expect = 8e-41, Method: Composition-based stats. Identities = 52/137 (37%), Positives = 83/137 (60%), Gaps = 2/137 (1%) Query: 50 ARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108 R+ S+ + G C +EM + +D+ERFG ASPR +DV++V G +T M Sbjct: 42 GRSLSIRAVDAGSCNGCELEMHALNNAFHDIERFGIRFVASPRHADVLLVTGPVTKNMRE 101 Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168 AL+R YD P P++V+++G CA GG + SY+V+RG +PVD+++PGCPP ++ Sbjct: 102 ALKRTYDATPNPKWVVALGDCAGNGGCFAGSYAVMRGVSEALPVDLHIPGCPPPPIEILK 161 Query: 169 GILLLQKKI-RRVGNVK 184 G+L L + + + G V+ Sbjct: 162 GLLTLLEGVNSKTGAVR 178 >gi|86748390|ref|YP_484886.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Rhodopseudomonas palustris HaA2] gi|86571418|gb|ABD05975.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Rhodopseudomonas palustris HaA2] Length = 177 Score = 170 bits (431), Expect = 8e-41, Method: Composition-based stats. Identities = 49/136 (36%), Positives = 80/136 (58%), Gaps = 1/136 (0%) Query: 50 ARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108 R+ S+ + G C +E+ + YD+ERFG ASPR +DV++V G +T+ M Sbjct: 42 GRSLSIREVDAGSCNGCELEIHALNNAYYDVERFGLRFVASPRHADVLMVTGPVTHNMRE 101 Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168 ALR YD +P P++V+++G CA GG + SY+V G ++PVD+++PGCPP+ ++ Sbjct: 102 ALRLTYDAVPGPKWVVAVGDCAKDGGCFAGSYAVAGGVSAVIPVDLHIPGCPPSPMQILR 161 Query: 169 GILLLQKKIRRVGNVK 184 G+L L + + Sbjct: 162 GLLALLDSVSERETSR 177 >gi|218883730|ref|YP_002428112.1| NADH-quinone oxidoreductase, B subunit [Desulfurococcus kamchatkensis 1221n] gi|218765346|gb|ACL10745.1| NADH-quinone oxidoreductase, B subunit [Desulfurococcus kamchatkensis 1221n] Length = 160 Score = 170 bits (431), Expect = 8e-41, Method: Composition-based stats. Identities = 56/130 (43%), Positives = 80/130 (61%), Gaps = 3/130 (2%) Query: 52 TGSLMWMTF---GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108 S + F C +E++ A P YD ERFG S R D+++V G +T K A Sbjct: 19 RYSPWLVHFNTGACNGCDIEVLAAITPLYDPERFGVKLAPSIRHGDILVVTGAVTKKAAE 78 Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168 L+R+YDQMP P++VI++G+CA GG + SY V+ G D+ VPV +Y+PGCPP EA++ Sbjct: 79 RLKRLYDQMPCPKFVIAVGACACTGGVFSKSYPVLAGADKAVPVSMYIPGCPPRPEAILD 138 Query: 169 GILLLQKKIR 178 GI+ L KK+ Sbjct: 139 GIVKLLKKLE 148 >gi|242399279|ref|YP_002994703.1| Membrane-bound hydrogenase MBH 1, subunit Mbh1J (hydrogenase subunit) [Thermococcus sibiricus MM 739] gi|242265672|gb|ACS90354.1| Membrane-bound hydrogenase MBH 1, subunit Mbh1J (hydrogenase subunit) [Thermococcus sibiricus MM 739] Length = 156 Score = 170 bits (431), Expect = 8e-41, Method: Composition-based stats. Identities = 50/157 (31%), Positives = 90/157 (57%), Gaps = 7/157 (4%) Query: 33 ITHKGFLVTSVDQLVTW-ARTGSLMWMT---FGLACCAVEMMQASMPRYDLERFGFAPRA 88 ++ + L + +L + R S C +E++ A PRYD ERFG Sbjct: 1 MSEREILEKRISKLCKYLGR--SPWVFHVNSGSCNGCDIEIIAALTPRYDAERFGIKLVG 58 Query: 89 SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 148 +PR +D+++V G +T++ ++ +Y+Q P+P+ V+++G+C GG + S DR Sbjct: 59 TPRHADILLVTGPITDQSLERVKLIYEQTPDPKVVVAIGACPTGGSVFFESPFTNAPLDR 118 Query: 149 IVPVDIYVPGCPPTAEALIYGILL-LQKKIRRVGNVK 184 +PVD+++PGCPP EA++YG++L L+K I+++ K Sbjct: 119 HIPVDVFIPGCPPRPEAVLYGVVLGLEKFIKKIEGEK 155 >gi|315231251|ref|YP_004071687.1| membrane bound hydrogenase NiFe-hydrogenase small subunit [Thermococcus barophilus MP] gi|315184279|gb|ADT84464.1| membrane bound hydrogenase NiFe-hydrogenase small subunit [Thermococcus barophilus MP] Length = 151 Score = 170 bits (431), Expect = 8e-41, Method: Composition-based stats. Identities = 50/151 (33%), Positives = 87/151 (57%), Gaps = 5/151 (3%) Query: 38 FLVTSVDQLVTWARTGSLMWMT---FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSD 94 L + +L + S C +E++ A PRYD ERFG +PR +D Sbjct: 1 MLEKRIAKLCKYIGR-SPWVFHVNSGSCNGCDIEIIAALTPRYDAERFGVKLVGTPRHAD 59 Query: 95 VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154 +++V G +T++ ++ +Y+Q P+P+ VI++G+C GG ++ S D+ +PVD+ Sbjct: 60 ILLVTGPITDQSLERVKLIYEQTPDPKVVIAVGACPTGGSVFYESPFTNAPLDKHIPVDV 119 Query: 155 YVPGCPPTAEALIYGILL-LQKKIRRVGNVK 184 +VPGCPP EA++YG++L L+K I+++ K Sbjct: 120 FVPGCPPRPEAILYGVVLGLEKLIKKIEGEK 150 >gi|320101012|ref|YP_004176604.1| NADH-quinone oxidoreductase subunit B [Desulfurococcus mucosus DSM 2162] gi|319753364|gb|ADV65122.1| NADH-quinone oxidoreductase, B subunit [Desulfurococcus mucosus DSM 2162] Length = 161 Score = 170 bits (430), Expect = 9e-41, Method: Composition-based stats. Identities = 53/130 (40%), Positives = 81/130 (62%), Gaps = 3/130 (2%) Query: 52 TGSLMWMTF---GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108 S + F C +E++ A P YD ERFG S R D+++V G +T K Sbjct: 19 RYSPWLVHFNTGACNGCDIEVLAAITPLYDPERFGVRLAPSIRHGDILVVTGAVTKKSGE 78 Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168 L+R+Y+QMP P++VI++G+CA GG + SY+V+ G D++VPV +Y+PGCPP EA++ Sbjct: 79 RLKRLYEQMPCPKFVIAVGACACSGGVFSKSYTVLAGADKVVPVSMYIPGCPPRPEAILD 138 Query: 169 GILLLQKKIR 178 GI+ L K++ Sbjct: 139 GIVKLLKRVE 148 >gi|169247665|gb|ACA51664.1| EchC [Thermoanaerobacterium saccharolyticum] Length = 157 Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats. Identities = 51/148 (34%), Positives = 83/148 (56%), Gaps = 7/148 (4%) Query: 43 VDQLVTWARTGSLMWMTF---GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVA 99 + + V + + S + + C +E++ P YD+ERFG +P+ +D++IV Sbjct: 3 LKEFVKKSFSKSPWVVHYDCGSCNGCDIEVLACMTPIYDMERFGMVNVGNPKHADILIVT 62 Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGC 159 GT+ K L+ VYD MP+P+ V++ G CA GG + Y+V+ G D+++PVD+YVPGC Sbjct: 63 GTVNEKNKDVLKNVYDMMPDPKVVVAAGICACSGGIFRDCYNVLGGIDKVIPVDVYVPGC 122 Query: 160 PPTAEALIYGILL----LQKKIRRVGNV 183 P EA+I G+ L+ K R + Sbjct: 123 PAKPEAMIDGLYKAAQILKDKYSRREVI 150 >gi|254458925|ref|ZP_05072348.1| hydrogenase-4 component I [Campylobacterales bacterium GD 1] gi|207084196|gb|EDZ61485.1| hydrogenase-4 component I [Campylobacterales bacterium GD 1] Length = 184 Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats. Identities = 53/139 (38%), Positives = 79/139 (56%), Gaps = 7/139 (5%) Query: 51 RTGSLMWMTF---GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMA 107 R S + + C +E++ A P+YDLERFG +P+QSDV +V G +T + Sbjct: 8 RKKSPWILHYNAGSCNGCDIEILAALGPKYDLERFGVINTGNPKQSDVFLVTGPVTYRSR 67 Query: 108 SALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALI 167 L +Y QMPEP+ V++ GSC GG + Y+V G DR +PVD+YVPGC + E LI Sbjct: 68 ERLVELYIQMPEPKVVVAFGSCTCTGGVFRDMYNVEDGIDRYIPVDVYVPGCAASPELLI 127 Query: 168 YGILL----LQKKIRRVGN 182 G++ L++K + + Sbjct: 128 DGLVKALDILKEKTKEMEK 146 >gi|307299704|ref|ZP_07579498.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Thermotogales bacterium mesG1.Ag.4.2] gi|306914631|gb|EFN45023.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Thermotogales bacterium mesG1.Ag.4.2] Length = 179 Score = 169 bits (428), Expect = 2e-40, Method: Composition-based stats. Identities = 49/139 (35%), Positives = 79/139 (56%) Query: 41 TSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAG 100 + +++ R+ SL + + C A+E+ R+D+ER G P A+PRQ+D+M++ G Sbjct: 6 KAWEKVANMLRSRSLWMLYYCTGCGAIELPPTMTSRFDMERLGIGPMATPRQADIMLITG 65 Query: 101 TLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCP 160 L+ K + Y+QM P+Y++ GSC GG Y+ SY+ + D VPVD+Y+ GC Sbjct: 66 YLSTKTLRRVIYSYEQMQSPKYIVGFGSCTLNGGIYYDSYATINKLDLYVPVDLYLAGCM 125 Query: 161 PTAEALIYGILLLQKKIRR 179 P EA++ G L KI + Sbjct: 126 PRPEAIVSGFTALMSKIDK 144 >gi|182414281|ref|YP_001819347.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Opitutus terrae PB90-1] gi|177841495|gb|ACB75747.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Opitutus terrae PB90-1] Length = 279 Score = 169 bits (428), Expect = 2e-40, Method: Composition-based stats. Identities = 54/132 (40%), Positives = 80/132 (60%), Gaps = 1/132 (0%) Query: 50 ARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108 R+ + + G C VE+ S P YDLERFG ASPR +D+++V G +T M Sbjct: 148 GRSLHIREVDAGSCNGCEVEINALSGPIYDLERFGIHLVASPRHADMLLVTGPVTRNMEL 207 Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168 ALR+ YD PEPR V+++G+C GG + +Y+ D ++PVD+Y+PGCPP AL++ Sbjct: 208 ALRKTYDATPEPRLVVAVGACGCSGGMFGRNYATCGSVDSVLPVDVYIPGCPPNPFALLH 267 Query: 169 GILLLQKKIRRV 180 GILL ++ + Sbjct: 268 GILLAVGRLEKR 279 >gi|20093160|ref|NP_619235.1| hydrogenase-3, subunit G (HycG homolog) [Methanosarcina acetivorans C2A] gi|19918502|gb|AAM07715.1| hydrogenase-3, subunit G (HycG-like protein) [Methanosarcina acetivorans C2A] Length = 170 Score = 168 bits (427), Expect = 2e-40, Method: Composition-based stats. Identities = 56/171 (32%), Positives = 95/171 (55%), Gaps = 2/171 (1%) Query: 10 IISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL-ACCAVE 68 +++ S KV F E+ G + V + + ++ + G +E Sbjct: 1 MVNPLSLFLRPKVTETFKFRDEELEALGEEIKKEIPKV-FGHSLAIRELDSGSDNSTEIE 59 Query: 69 MMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGS 128 + P YD+ERFG + ASPR +D+++V G +T MA A+++ Y+ MP P++V+++G Sbjct: 60 ISNLGNPHYDVERFGISFVASPRHADILLVTGAVTLNMAEAVKKTYEAMPSPKFVVAVGD 119 Query: 129 CANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179 A GG Y SY+V+ G D+I+PVD+ +PG PP+ + ++ GIL L KK + Sbjct: 120 DACDGGIYKDSYAVLSGVDKILPVDMKIPGNPPSPKEILKGILALVKKASK 170 >gi|268324502|emb|CBH38090.1| F420H2-quinone oxidoreductase, subunit BCD fusion [uncultured archaeon] Length = 772 Score = 168 bits (427), Expect = 2e-40, Method: Composition-based stats. Identities = 57/142 (40%), Positives = 79/142 (55%), Gaps = 1/142 (0%) Query: 36 KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDV 95 + + W+ SL F +CC VE+ A YD ER G RQS+ Sbjct: 10 RNLNSGILSPFRRWSSKWSLWPCHFITSCCGVELAHAFASGYDGERLGTLNLGISRQSNY 69 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155 +IV GT+T KMA AL+ V+ QMP+P++V +G+C GG + SY++ D IVPVD + Sbjct: 70 IIVEGTITRKMARALQFVWGQMPDPKFVNVIGACGQRGGIFWNSYNITHPSD-IVPVDAF 128 Query: 156 VPGCPPTAEALIYGILLLQKKI 177 +PGCP T EAL+ G+ Q KI Sbjct: 129 IPGCPITPEALLRGVRATQDKI 150 >gi|160902353|ref|YP_001567934.1| NADH dehydrogenase subunit B [Petrotoga mobilis SJ95] gi|160359997|gb|ABX31611.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Petrotoga mobilis SJ95] Length = 195 Score = 168 bits (426), Expect = 3e-40, Method: Composition-based stats. Identities = 50/158 (31%), Positives = 83/158 (52%) Query: 22 VDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLER 81 + +++ +T +++ R SL + + C AVE+ R+D+ER Sbjct: 3 NEEKIEQMNIFEEDLNDTITFWEKIKNIFRGKSLWMLHYCTGCGAVELPPTMTARFDMER 62 Query: 82 FGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYS 141 G P A+PRQ+DV+++ G L+ K + Y+QM P+Y++ GSC GG Y+ SY+ Sbjct: 63 LGMGPMATPRQADVLLITGYLSVKTLRRVIYTYEQMMTPKYLVGFGSCTINGGIYYDSYA 122 Query: 142 VVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179 V+ D +PVD+YV GC P EA++ L+ I + Sbjct: 123 VINRLDYYLPVDLYVAGCMPRPEAIMNTFKTLENMITK 160 >gi|269104123|ref|ZP_06156819.1| formate hydrogenlyase subunit 7 [Photobacterium damselae subsp. damselae CIP 102761] gi|268160763|gb|EEZ39260.1| formate hydrogenlyase subunit 7 [Photobacterium damselae subsp. damselae CIP 102761] Length = 287 Score = 168 bits (426), Expect = 3e-40, Method: Composition-based stats. Identities = 56/141 (39%), Positives = 81/141 (57%), Gaps = 6/141 (4%) Query: 44 DQLVTWARTGSLMWMT--FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGT 101 D L+ R + ++ G C +E+ A+ P +D ERFG ASPR +D+++ G Sbjct: 29 DALIKQIRRSAYVYRVDCGGCNACEIEIFAATTPVFDAERFGIKVVASPRHADILLFTGA 88 Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP 161 +T M + R Y+ P+P+ VIS G+C GG +H Y V G D+IVPVD+Y+PGCPP Sbjct: 89 VTRAMRAPALRAYEAAPDPKIVISYGACGCDGGIFHDLYCVWGGTDKIVPVDVYIPGCPP 148 Query: 162 TAEALIYGIL----LLQKKIR 178 T A IYG LL +K++ Sbjct: 149 TPAATIYGFAVALGLLDQKLK 169 >gi|326202175|ref|ZP_08192045.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Clostridium papyrosolvens DSM 2782] gi|325987970|gb|EGD48796.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Clostridium papyrosolvens DSM 2782] Length = 266 Score = 168 bits (426), Expect = 3e-40, Method: Composition-based stats. Identities = 56/166 (33%), Positives = 88/166 (53%), Gaps = 4/166 (2%) Query: 8 QKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCA 66 QK + L +D + + E+ K + + R+ ++ + G C Sbjct: 99 QKSRDLLRATPLYVIDEEINGTDYELIGKKLNEKVAKK---FGRSLNIREVDAGSCNGCD 155 Query: 67 VEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISM 126 E+ + P D+ERFG ASPR +D+++V G ++ M AL + Y+ P P+ V++ Sbjct: 156 YEIQALNGPYNDIERFGIHFVASPRHADMLLVTGCVSRNMEEALVKTYNATPSPKLVVAA 215 Query: 127 GSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILL 172 G+CA GG + SY+ G D I+PVD+Y+PGCPP +ALIYGIL Sbjct: 216 GACACSGGLFKDSYAGRNGIDTILPVDVYIPGCPPRPQALIYGILK 261 >gi|289522403|ref|ZP_06439257.1| carbon monoxide-induced hydrogenase, CooL subunit [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289504239|gb|EFD25403.1| carbon monoxide-induced hydrogenase, CooL subunit [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 160 Score = 168 bits (425), Expect = 4e-40, Method: Composition-based stats. Identities = 51/133 (38%), Positives = 74/133 (55%), Gaps = 3/133 (2%) Query: 53 GSLMWMTF---GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASA 109 S+ C +E++ PRYD+ERFG +PR +D ++V G +T M Sbjct: 15 RSIWAFHCNSGSCNGCDIEIVALLTPRYDIERFGMKLVGTPRHADALLVTGPVTKYMTDR 74 Query: 110 LRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYG 169 LRRVY QMP P+ VI +G+C G ++ SY++ D+I+PVD+YV GCPP EA+I G Sbjct: 75 LRRVYAQMPNPKVVIVVGNCGASGDVFYKSYNLDGPVDQILPVDVYVHGCPPRPEAIIDG 134 Query: 170 ILLLQKKIRRVGN 182 + K+ N Sbjct: 135 VTKAIAKLEEKRN 147 >gi|315230620|ref|YP_004071056.1| NADH-ubiquinone oxidoreductase subunit B [Thermococcus barophilus MP] gi|315183648|gb|ADT83833.1| NADH-ubiquinone oxidoreductase chain B [Thermococcus barophilus MP] Length = 190 Score = 168 bits (425), Expect = 4e-40, Method: Composition-based stats. Identities = 49/136 (36%), Positives = 77/136 (56%) Query: 43 VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL 102 + L +AR SL + F C +EM RYDLERFG P +PR +D+ ++ G + Sbjct: 7 FEPLFEFARKRSLWIVAFCTGCGGIEMPPLMTSRYDLERFGMMPNPAPRMADLFLITGYV 66 Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162 T K + Y+ P+P+YV++ GSC GG Y +Y+ ++ D+ +PVD+Y+ GC P Sbjct: 67 TPKTLKRIIITYEMQPDPKYVMAHGSCPLNGGIYWDAYNAIKHLDKYIPVDVYIAGCMPR 126 Query: 163 AEALIYGILLLQKKIR 178 EA++ GI + + I Sbjct: 127 PEAVMDGIKKIMEMIE 142 >gi|282163150|ref|YP_003355535.1| Ech hydrogenase subunit C [Methanocella paludicola SANAE] gi|282155464|dbj|BAI60552.1| Ech hydrogenase subunit C [Methanocella paludicola SANAE] Length = 156 Score = 167 bits (424), Expect = 5e-40, Method: Composition-based stats. Identities = 56/142 (39%), Positives = 84/142 (59%), Gaps = 7/142 (4%) Query: 46 LVTWARTGSLMWMT---FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL 102 L +R S + G C +E++ PRYD+ RFG +P+ +DVM+V G + Sbjct: 3 LTEISRKKSPWVIHVGTGGCNGCDLEILACLTPRYDVSRFGVMSTGNPKHADVMLVVGPV 62 Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162 T K ++ +YDQMP+P+ VIS+G+CA+ GG Y Y G D++VPVD+YVPGC Sbjct: 63 TIKYKEIIKNLYDQMPDPKVVISVGTCASTGGIYQGCYGHCGGVDKVVPVDVYVPGCNVR 122 Query: 163 AEALIYGILL----LQKKIRRV 180 EA+I G++L L +K R++ Sbjct: 123 PEAVIDGLVLALDILNEKERKI 144 >gi|288940086|ref|YP_003442326.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Allochromatium vinosum DSM 180] gi|288895458|gb|ADC61294.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Allochromatium vinosum DSM 180] Length = 154 Score = 167 bits (424), Expect = 6e-40, Method: Composition-based stats. Identities = 41/136 (30%), Positives = 76/136 (55%), Gaps = 3/136 (2%) Query: 52 TGSLMWMTFG---LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108 S + + C +E++ P YD+ERFG +P+ +D+ +V G++ + Sbjct: 5 KKSPWVLHYAATSCNGCDIELLACLTPTYDVERFGIVNTGNPKHADIFLVTGSVNEESRK 64 Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168 + +Y QMP+P+ V+++G+CA GG + +Y+V G D+++PVD+YVPGC E++I Sbjct: 65 VVENLYAQMPDPKVVVAIGACALSGGIFRDAYNVYGGIDQVLPVDVYVPGCAARPESIID 124 Query: 169 GILLLQKKIRRVGNVK 184 GI+ + + + Sbjct: 125 GIVQALDILEQRAKAR 140 >gi|307265664|ref|ZP_07547217.1| NADH dehydrogenase (quinone) [Thermoanaerobacter wiegelii Rt8.B1] gi|306919308|gb|EFN49529.1| NADH dehydrogenase (quinone) [Thermoanaerobacter wiegelii Rt8.B1] Length = 155 Score = 167 bits (424), Expect = 6e-40, Method: Composition-based stats. Identities = 51/149 (34%), Positives = 89/149 (59%), Gaps = 7/149 (4%) Query: 43 VDQLVTWARTGSLMWMTF---GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVA 99 + + V + S + + C +E++ P YD+ERFG +P+ +D+++V Sbjct: 3 LKEFVEKSFKKSPWVLHYNCSSCNGCDIEILACMTPLYDMERFGMVNVGNPKHADILVVT 62 Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGC 159 GT+ +K L+ +YDQMPEP+ V+++G CA GG + +Y+V+ G D+++PVD+YVPGC Sbjct: 63 GTVNHKNKEVLKNIYDQMPEPKVVVAVGVCAATGGIFREAYNVLGGIDKVIPVDVYVPGC 122 Query: 160 PPTAEALIYGILL----LQKKIRRVGNVK 184 P EA+I G+ L++K ++G + Sbjct: 123 PAKPEAIIDGLYKAAEILKEKYEKMGKAE 151 >gi|119871850|ref|YP_929857.1| NADH-quinone oxidoreductase, B subunit [Pyrobaculum islandicum DSM 4184] gi|119673258|gb|ABL87514.1| NADH-quinone oxidoreductase, B subunit [Pyrobaculum islandicum DSM 4184] gi|164472821|dbj|BAF32936.2| NADH-ubiquinone oxidoreductase subunit [Pyrobaculum islandicum DSM 4184] Length = 183 Score = 167 bits (423), Expect = 7e-40, Method: Composition-based stats. Identities = 58/130 (44%), Positives = 82/130 (63%), Gaps = 1/130 (0%) Query: 49 WARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108 W SL + +CC VE+ S P +D ER+G P + RQS+V++V GT+T KMA Sbjct: 21 WGVRWSLWPVHLVTSCCGVEVAHTSGPGFDAERWGVLPFHTMRQSNVILVEGTITKKMAK 80 Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168 L+ VY+QMPEP+YVI+MG+CA GG + SY VV+ + +Y+ GCPPT EA+I Sbjct: 81 VLKMVYEQMPEPKYVIAMGACAVRGGLFWNSYHVVQVDTVVPVD-VYIAGCPPTPEAVIR 139 Query: 169 GILLLQKKIR 178 ++L KI+ Sbjct: 140 AFIMLHNKIK 149 >gi|307353199|ref|YP_003894250.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanoplanus petrolearius DSM 11571] gi|307156432|gb|ADN35812.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanoplanus petrolearius DSM 11571] Length = 171 Score = 167 bits (423), Expect = 7e-40, Method: Composition-based stats. Identities = 55/172 (31%), Positives = 92/172 (53%), Gaps = 9/172 (5%) Query: 9 KIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL-ACCAV 67 K+I + +E D+DF R S L ++ + + R+ ++ + G + Sbjct: 7 KLIQKPLTERIEVNDSDFERYGS------MLKAEINSV--FKRSIAIREVDCGSDNAAEI 58 Query: 68 EMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMG 127 E+ S P YD+ERFG ASPR +DV+ V G +T+ M AL++ YD P P++V+++G Sbjct: 59 EINNLSSPYYDVERFGVTFVASPRHADVLFVTGAVTHNMRYALKKTYDATPSPKFVVAIG 118 Query: 128 SCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179 A GG + SY++ +VPVD+ +PG PP +I +L L K+ ++ Sbjct: 119 DEACNGGIFKDSYAICGPVSSVVPVDLEIPGNPPEPVDMIKSLLALMKEAKK 170 >gi|126465551|ref|YP_001040660.1| NADH-quinone oxidoreductase, B subunit [Staphylothermus marinus F1] gi|126014374|gb|ABN69752.1| NADH-quinone oxidoreductase, B subunit [Staphylothermus marinus F1] Length = 179 Score = 167 bits (422), Expect = 8e-40, Method: Composition-based stats. Identities = 59/138 (42%), Positives = 80/138 (57%) Query: 46 LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNK 105 W R+ S+ + + AC A+E+ M D ER+G P SPRQ+DV+++ G +T K Sbjct: 11 FAEWVRSRSIWMIHYCSACGAIELPPNMMAPLDAERWGIMPAPSPRQADVLVIMGYVTKK 70 Query: 106 MASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEA 165 L R+Y QMPEPRYV+ +C GG Y SYS V+ D +PVD++VPGC P AE Sbjct: 71 TLKVLMRLYHQMPEPRYVMVGCNCPATGGLYWDSYSTVKAVDEFLPVDVWVPGCMPRAED 130 Query: 166 LIYGILLLQKKIRRVGNV 183 + G L L+KKI V Sbjct: 131 WLQGFLKLRKKISEGRIV 148 >gi|269216332|ref|ZP_06160186.1| hydrogenase-4 component I [Slackia exigua ATCC 700122] gi|269130591|gb|EEZ61669.1| hydrogenase-4 component I [Slackia exigua ATCC 700122] Length = 261 Score = 167 bits (422), Expect = 8e-40, Method: Composition-based stats. Identities = 53/172 (30%), Positives = 84/172 (48%), Gaps = 6/172 (3%) Query: 19 LEKVDADFSRISSEI-THKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPR 76 LE+V I + I + L R+ + + G C +E+ P Sbjct: 5 LEQVPERLQAIPTRIELDESIQKAKAALLNDIKRSVYIYRVDCGGCNACEIEIFATITPV 64 Query: 77 YDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY 136 +D ERFG SPR +D+++ G +T M R Y+ P+P+ V+S G+C GG + Sbjct: 65 FDAERFGIKNTPSPRHADILVFTGAVTRAMRLPAMRAYEGAPDPKLVVSYGACGCTGGIF 124 Query: 137 HYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKKIRRVGNVK 184 H +Y V G D+I+PVD+Y+PGCPP+ IYG +L +K+ ++ Sbjct: 125 HDNYCVWGGTDQILPVDVYIPGCPPSPAQTIYGFAMTLGMLGQKLHHKETIE 176 >gi|323139190|ref|ZP_08074246.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methylocystis sp. ATCC 49242] gi|322395573|gb|EFX98118.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methylocystis sp. ATCC 49242] Length = 166 Score = 167 bits (422), Expect = 1e-39, Method: Composition-based stats. Identities = 59/167 (35%), Positives = 90/167 (53%), Gaps = 12/167 (7%) Query: 8 QKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCA 66 Q++++ S EK+ A+ S + R+ S+ + G C Sbjct: 2 QRVLTEPPPESDEKMLAELGETLSTSARRAL-----------GRSLSVRQVDAGSCNGCE 50 Query: 67 VEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISM 126 +E+ S P YDLERFG ASPR +DV++V G +T M AL+R YD P P++V+++ Sbjct: 51 LEIHALSNPYYDLERFGLRFVASPRHADVLMVTGPVTKNMCEALQRTYDATPNPKWVVAV 110 Query: 127 GSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLL 173 G CA GG + SY+ V ++VPVD++V GCPP AL+ G++ L Sbjct: 111 GDCAFDGGVFAGSYACVGAVTKVVPVDLHVRGCPPDPIALLKGLIAL 157 >gi|326202291|ref|ZP_08192160.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Clostridium papyrosolvens DSM 2782] gi|325987409|gb|EGD48236.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Clostridium papyrosolvens DSM 2782] Length = 149 Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats. Identities = 43/135 (31%), Positives = 79/135 (58%), Gaps = 3/135 (2%) Query: 46 LVTWARTGSLMWMTF---GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL 102 +++ +R S M + C +E + P YD ER G +P+ +D+++V G++ Sbjct: 3 IISKSRKKSPWIMHYDCTSCNGCDIETLACLTPLYDAERLGIINVGNPKHADILLVTGSV 62 Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162 + L+ +Y+QMP+P+ V+++G+CA GG + Y+V+ G + ++PVD++VPGC Sbjct: 63 NKRNEIVLKNIYNQMPDPKCVVAIGACACTGGIFRECYNVLGGVENVIPVDVFVPGCCAR 122 Query: 163 AEALIYGILLLQKKI 177 EA+I GI+ K+ Sbjct: 123 PEAIIDGIVQAIGKL 137 >gi|219853280|ref|YP_002467712.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanosphaerula palustris E1-9c] gi|219547539|gb|ACL17989.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanosphaerula palustris E1-9c] Length = 147 Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats. Identities = 45/135 (33%), Positives = 79/135 (58%), Gaps = 7/135 (5%) Query: 52 TGSLMWMTF---GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108 S + + C +E++ P YDLERFG +P+ +D+ +V G + + + Sbjct: 5 KKSPWIIHYDASSCNGCDIEVLACLTPMYDLERFGIINTGNPKHADIFLVTGGVNEQNRA 64 Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168 ++ +YDQMPEP+ VI++G CA GG + Y+++ G D+++PVD+Y+PGCP E +I Sbjct: 65 VIKNIYDQMPEPKVVIALGVCATSGGVFRECYNIIGGIDKVIPVDVYLPGCPVRPEQIID 124 Query: 169 GILL----LQKKIRR 179 ++ L++K R+ Sbjct: 125 SVVKSLSILEEKQRQ 139 >gi|242399881|ref|YP_002995306.1| Membrane-bound NADP+-reducing complex MBX, subunit MbxJ (dehydrogenase subunit) [Thermococcus sibiricus MM 739] gi|242266275|gb|ACS90957.1| Membrane-bound NADP+-reducing complex MBX, subunit MbxJ (dehydrogenase subunit) [Thermococcus sibiricus MM 739] Length = 193 Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats. Identities = 47/134 (35%), Positives = 76/134 (56%) Query: 44 DQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLT 103 + L+ +AR S+ + F C +EM RYDLERFG P +PR +D+ ++ G +T Sbjct: 8 EPLINFARKRSMWIVAFCTGCGGIEMPPLMTSRYDLERFGMMPNPAPRMADLFLITGYVT 67 Query: 104 NKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTA 163 K + Y+ P+P+YV++ GSC GG Y Y+ ++ D+ +PVD+ + GC P Sbjct: 68 PKTLKRIIITYEMQPDPKYVLAHGSCPLNGGIYWDGYNAIKHLDKYLPVDVAIAGCMPRP 127 Query: 164 EALIYGILLLQKKI 177 EA++ GI + + I Sbjct: 128 EAVMDGIKKIMELI 141 >gi|182415924|ref|YP_001820990.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Opitutus terrae PB90-1] gi|177843138|gb|ACB77390.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Opitutus terrae PB90-1] Length = 338 Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats. Identities = 42/134 (31%), Positives = 73/134 (54%), Gaps = 3/134 (2%) Query: 52 TGSLMWMTF---GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108 S + + C +E + P YD+ER G +P+ +D+ +V G + + Sbjct: 5 RKSPWIIHYDASSCNGCDIETLACLTPLYDVERLGVINTGNPKHADIFLVTGAVNEQSKE 64 Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168 +R +Y Q+PEP+ V+++G CA+ GG + Y++ G DR++PVD+YVPGC EA+I Sbjct: 65 VIRNIYHQLPEPKVVVAIGVCASSGGIFRDCYNIAGGVDRVIPVDVYVPGCAARPEAIID 124 Query: 169 GILLLQKKIRRVGN 182 G++ + R + Sbjct: 125 GVVQALGVLERKQS 138 >gi|160879875|ref|YP_001558843.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Clostridium phytofermentans ISDg] gi|160428541|gb|ABX42104.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Clostridium phytofermentans ISDg] Length = 144 Score = 166 bits (420), Expect = 1e-39, Method: Composition-based stats. Identities = 43/134 (32%), Positives = 80/134 (59%), Gaps = 7/134 (5%) Query: 52 TGSLMWMTF---GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108 S + + C +E++ P YD+ERFG +P+ +D++++ G++ + Sbjct: 5 KKSPWIIHYDGSSCNGCDIEVLACLTPLYDVERFGIINTGNPKHADILLITGSVNEQNIP 64 Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168 ++++Y+QM EP+ V+++G CAN GG + Y+V G D+++PVD+YVPGC EA+I Sbjct: 65 VVKQIYEQMAEPKIVVAVGICANSGGIFAECYNVSGGVDKVLPVDVYVPGCAARPEAIID 124 Query: 169 GILL----LQKKIR 178 G++ L++K + Sbjct: 125 GVVKGLAILEEKQK 138 >gi|284162674|ref|YP_003401297.1| NADH-quinone oxidoreductase subunit beta [Archaeoglobus profundus DSM 5631] gi|284012671|gb|ADB58624.1| NADH-quinone oxidoreductase, B subunit [Archaeoglobus profundus DSM 5631] Length = 709 Score = 166 bits (420), Expect = 1e-39, Method: Composition-based stats. Identities = 58/133 (43%), Positives = 74/133 (55%), Gaps = 1/133 (0%) Query: 46 LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNK 105 L W SL + ACC VE+ A YD ER G RQ++++IV G +T K Sbjct: 2 LKEWGTKWSLWPVHLVTACCGVELAHAYACGYDAERIGSLNYGICRQTNLIIVEGAITRK 61 Query: 106 MASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEA 165 MA LR ++QMP P++VI MG+C GG + SY +VR D + GCPPT EA Sbjct: 62 MARVLRITWEQMPNPKFVIVMGACGIKGGLFKNSYHMVRPWDVVPVDVFVP-GCPPTPEA 120 Query: 166 LIYGILLLQKKIR 178 LI GI+ LQKKI Sbjct: 121 LIRGIVALQKKIE 133 >gi|220929108|ref|YP_002506017.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Clostridium cellulolyticum H10] gi|219999436|gb|ACL76037.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Clostridium cellulolyticum H10] Length = 266 Score = 166 bits (420), Expect = 1e-39, Method: Composition-based stats. Identities = 58/166 (34%), Positives = 87/166 (52%), Gaps = 4/166 (2%) Query: 8 QKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCA 66 QK + L D D + I E+ K + + R+ + + G C Sbjct: 99 QKSRELLRAAPLYVGDKDVNGIDYELIGKKLNQKIGKK---FGRSLHIREVDAGSCNGCD 155 Query: 67 VEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISM 126 E+ + P D+ERFG ASPR +D+++V G ++ M AL + Y+ P P+ V++ Sbjct: 156 YEVQALNGPYNDIERFGIHFVASPRHADMLLVTGCVSRNMEEALVKTYNATPSPKLVVAA 215 Query: 127 GSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILL 172 G+CA GG + SY+ G D I+PVD+Y+PGCPP +ALIYGIL Sbjct: 216 GACACSGGLFKDSYAGRNGIDTILPVDVYIPGCPPRPQALIYGILK 261 >gi|302670765|ref|YP_003830725.1| ech hydrogenase subunit C EchC [Butyrivibrio proteoclasticus B316] gi|302395238|gb|ADL34143.1| ech hydrogenase subunit C EchC [Butyrivibrio proteoclasticus B316] Length = 228 Score = 166 bits (420), Expect = 2e-39, Method: Composition-based stats. Identities = 45/138 (32%), Positives = 82/138 (59%), Gaps = 7/138 (5%) Query: 52 TGSLMWMTF---GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108 + S + + C +E++ P YD+ERFG +P+ +DV+++ G + + A Sbjct: 4 SKSPWVLHYDGSSCNGCDIEVLATMTPLYDVERFGIINTGNPKHADVLLLTGGVNAQTAP 63 Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168 +R++Y+ MP+P+ V++ G CA GG + Y+++ G D++VPVD+YVPGC EALI Sbjct: 64 VIRQLYNMMPDPKVVVACGICACDGGIFKECYNILGGADKVVPVDVYVPGCAVRPEALIE 123 Query: 169 GILL----LQKKIRRVGN 182 G++ L++K +++ Sbjct: 124 GVVKAVGILEEKRKKLKE 141 >gi|330448643|ref|ZP_08312291.1| hydrogenase 3 and formate hydrogenlyase complex, HycG subunit [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328492834|dbj|GAA06788.1| hydrogenase 3 and formate hydrogenlyase complex, HycG subunit [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 277 Score = 166 bits (420), Expect = 2e-39, Method: Composition-based stats. Identities = 56/141 (39%), Positives = 81/141 (57%), Gaps = 6/141 (4%) Query: 44 DQLVTWARTGSLMWMT--FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGT 101 D L+ R + ++ G C +E+ A+ P +D ERFG ASPR +D+++ G Sbjct: 29 DALIKQIRRSAYVYRVDCGGCNACEIEIFAATTPVFDAERFGIKVVASPRHADILLFTGA 88 Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP 161 +T M + R Y+ P+P+ VIS G+C GG +H Y V G D+IVPVD+Y+PGCPP Sbjct: 89 VTRAMRAPALRAYEAAPDPKIVISYGACGCDGGIFHDLYCVWGGTDKIVPVDVYIPGCPP 148 Query: 162 TAEALIYGIL----LLQKKIR 178 T A IYG LL +K++ Sbjct: 149 TPAATIYGFAVALGLLDQKLK 169 >gi|325290171|ref|YP_004266352.1| ech hydrogenase subunit C [Syntrophobotulus glycolicus DSM 8271] gi|324965572|gb|ADY56351.1| ech hydrogenase subunit C [Syntrophobotulus glycolicus DSM 8271] Length = 145 Score = 166 bits (420), Expect = 2e-39, Method: Composition-based stats. Identities = 46/138 (33%), Positives = 82/138 (59%), Gaps = 7/138 (5%) Query: 53 GSLMWMTF---GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASA 109 S + + C +E++ P YD+ERFG +P+ +D+ ++ G++ + + Sbjct: 6 KSPWLVHYDASSCNGCDIEVLACLTPLYDVERFGVLNIGNPKHADIFVITGSVNEQNKTV 65 Query: 110 LRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYG 169 ++ +YDQMPEP+ V+++G+CA GG + Y+V G D+++PVD+YVPGC EA+I G Sbjct: 66 IKNIYDQMPEPKVVVAIGACATSGGVFRQCYNVQGGVDKVIPVDVYVPGCAARPEAIIDG 125 Query: 170 ILL----LQKKIRRVGNV 183 ++ L+ K + +G V Sbjct: 126 VVQGLAVLESKYKNMGKV 143 >gi|303241790|ref|ZP_07328286.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Acetivibrio cellulolyticus CD2] gi|302590671|gb|EFL60423.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Acetivibrio cellulolyticus CD2] Length = 154 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 44/140 (31%), Positives = 80/140 (57%), Gaps = 7/140 (5%) Query: 52 TGSLMWMTF---GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108 S + + C +E++ P YD ERFG +P+ +D+ +V G++ + Sbjct: 5 AKSPWILHYDASSCNGCDIEVLACLTPMYDAERFGIINTGNPKHADIFVVTGSVNEQNID 64 Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168 ++ +Y+QMP+P+ V+++G CA GG + Y++ G D+++PVD+YV GC EA+I Sbjct: 65 VIKNLYNQMPDPKVVVAVGICAATGGIFSECYNIQGGIDKVLPVDVYVAGCAARPEAIID 124 Query: 169 GILL----LQKKIRRVGNVK 184 GI+ L++K +++ N K Sbjct: 125 GIVQAVGILEEKHKKMKNGK 144 >gi|91978313|ref|YP_570972.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Rhodopseudomonas palustris BisB5] gi|91684769|gb|ABE41071.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Rhodopseudomonas palustris BisB5] Length = 177 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 47/129 (36%), Positives = 78/129 (60%), Gaps = 1/129 (0%) Query: 50 ARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108 R+ ++ + G C +E+ S YD+ERFG ASPR +DV++V G +T+ M Sbjct: 42 GRSLAIREVDAGSCNGCELEIHALSNAYYDVERFGLRFVASPRHADVLMVTGPVTHNMRE 101 Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168 ALR Y+ +P P++V++ G CA GG + SY++ G ++PVD+++PGCPP+ ++ Sbjct: 102 ALRLTYEAVPGPKWVVATGDCAKDGGCFAGSYAITGGVSAVIPVDLHIPGCPPSPVQILR 161 Query: 169 GILLLQKKI 177 G+L L + Sbjct: 162 GLLALLDSV 170 >gi|296446945|ref|ZP_06888880.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methylosinus trichosporium OB3b] gi|296255512|gb|EFH02604.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methylosinus trichosporium OB3b] Length = 169 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 49/127 (38%), Positives = 77/127 (60%), Gaps = 1/127 (0%) Query: 50 ARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108 R+ S+ + G C +E+ + YDLERFG ASPR +DV++V G +T M Sbjct: 42 GRSLSIREVDAGSCNACELEIHALNNAFYDLERFGLRFVASPRHADVLLVTGPMTKNMRE 101 Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168 A+ R Y P+P++V+++G CA GG Y SY+ G D+++PVD+++ GCPP AL+ Sbjct: 102 AVERTYAATPDPKWVVAVGDCACSGGLYAESYACEGGVDKVIPVDLHIRGCPPEPVALLE 161 Query: 169 GILLLQK 175 G++ L + Sbjct: 162 GLIALVE 168 >gi|307352628|ref|YP_003893679.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanoplanus petrolearius DSM 11571] gi|307155861|gb|ADN35241.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanoplanus petrolearius DSM 11571] Length = 146 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 43/134 (32%), Positives = 75/134 (55%), Gaps = 3/134 (2%) Query: 52 TGSLMWMTF---GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108 T S + + C +E++ P YD+ERFG +P+ +DV +V G++ + Sbjct: 5 TKSPWIIHYDASSCNGCDIEVLACLTPLYDVERFGIINTGNPKHADVFLVTGSVNEQNKP 64 Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168 ++ +Y QMP+P V+++G+CA GG + Y+V G D+++PVD+YVPGC EA+I Sbjct: 65 VIKNIYKQMPKPNVVVAIGACALSGGVFRECYNVAGGVDKLIPVDVYVPGCAAKPEAIID 124 Query: 169 GILLLQKKIRRVGN 182 G++ + + Sbjct: 125 GVVKALGILEQKRE 138 >gi|218660809|ref|ZP_03516739.1| NADH-ubiquinone oxidoreductase protein, chain B [Rhizobium etli IE4771] Length = 118 Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats. Identities = 67/108 (62%), Positives = 87/108 (80%), Gaps = 1/108 (0%) Query: 76 RYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY 135 RYDL+RFG R SPRQSDVMI+AGT+T K A +RR+YDQMPEPR+VI+MG+CA GG Sbjct: 1 RYDLDRFGVVFRPSPRQSDVMIIAGTVTRKFAPVVRRLYDQMPEPRWVIAMGTCAISGGV 60 Query: 136 YHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 Y+ +Y+VV+G + VPVD++VPGCPP EAL++G LLLQ+KI+R + Sbjct: 61 YN-TYAVVQGSETFVPVDVHVPGCPPRPEALMHGFLLLQEKIKRSRAL 107 >gi|209964717|ref|YP_002297632.1| hydrogenase-4 Fe-S subunit I [Rhodospirillum centenum SW] gi|209958183|gb|ACI98819.1| hydrogenase-4 Fe-S subunit I [Rhodospirillum centenum SW] Length = 196 Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats. Identities = 48/127 (37%), Positives = 81/127 (63%), Gaps = 1/127 (0%) Query: 50 ARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108 R+ ++ + G C +E+ + P YDLERFGF+ ASPR +DV++V G +T M Sbjct: 42 GRSLAIRQVDAGSCNACEMEIHALNNPVYDLERFGFSFVASPRHADVLLVTGPVTTNMRE 101 Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168 AL + ++ P+P++V+++G CA GG + SY+VV G +++VPVD+ +PGCPP ++ Sbjct: 102 ALLKTWEATPDPKWVVALGQCAIDGGPFADSYAVVGGVEKVVPVDLMIPGCPPRPVDILA 161 Query: 169 GILLLQK 175 ++ L + Sbjct: 162 ALVALIE 168 >gi|288575153|ref|ZP_06393510.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Dethiosulfovibrio peptidovorans DSM 11002] gi|288570894|gb|EFC92451.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Dethiosulfovibrio peptidovorans DSM 11002] Length = 151 Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats. Identities = 58/139 (41%), Positives = 83/139 (59%), Gaps = 10/139 (7%) Query: 53 GSLMWM---TFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASA 109 SL T C +E++ PRYD+ERFG +PR +DV++V G +T M Sbjct: 12 KSLWVFSTNTGSCNGCDIEIVSTVSPRYDIERFGMKLTGTPRHADVLLVTGPVTRFMKEK 71 Query: 110 LRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYG 169 L R+Y Q+P+P+ VI++G+CA G Y SY++V DRI+PVD+YV GCPP EA+I G Sbjct: 72 LERIYAQIPDPKVVIAVGNCACSGDVYFKSYNLVGPVDRIIPVDVYVHGCPPRPEAIIEG 131 Query: 170 ----ILLLQKK---IRRVG 181 +L L+ K +R+ G Sbjct: 132 AAKAVLKLEAKRAELRKAG 150 >gi|220930729|ref|YP_002507638.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Clostridium cellulolyticum H10] gi|220001057|gb|ACL77658.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Clostridium cellulolyticum H10] Length = 149 Score = 165 bits (418), Expect = 3e-39, Method: Composition-based stats. Identities = 42/135 (31%), Positives = 79/135 (58%), Gaps = 3/135 (2%) Query: 46 LVTWARTGSLMWMTF---GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL 102 +++ +R S + + C +E + P YD ER G +P+ +D+++V G++ Sbjct: 3 IISKSRKKSPWIIHYDCTSCNGCDIETLACLTPMYDAERLGIINVGNPKHADILLVTGSV 62 Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162 + L+ +Y+QMP+P+ V+++G+CA GG + Y+V+ G + ++PVD++VPGC Sbjct: 63 NKRNELVLKNIYNQMPDPKCVVAIGACACTGGIFKECYNVLGGVENVIPVDVFVPGCCAR 122 Query: 163 AEALIYGILLLQKKI 177 EA+I GI+ K+ Sbjct: 123 PEAIIDGIVQAIGKL 137 >gi|147919863|ref|YP_686386.1| ech hydrogenase, subunit C [uncultured methanogenic archaeon RC-I] gi|110621782|emb|CAJ37060.1| Ech hydrogenase, subunit C [uncultured methanogenic archaeon RC-I] Length = 157 Score = 165 bits (418), Expect = 3e-39, Method: Composition-based stats. Identities = 51/146 (34%), Positives = 81/146 (55%), Gaps = 7/146 (4%) Query: 46 LVTWARTGSLMWMT---FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL 102 V +R S + G C +E++ PRYD+ RFG +P+ +DVM+V G + Sbjct: 3 FVELSRKKSPWVIHVNTGGCNGCDLEILSCLTPRYDISRFGVYSTGNPKHADVMLVVGPV 62 Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162 T K + +Y+QMP+P+ V+++GSCA+ G Y Y D+++PVD+YVPGC Sbjct: 63 TLKYKEIITNLYNQMPDPKVVMAVGSCASTGAIYQGCYGTCGSLDKVIPVDVYVPGCNCR 122 Query: 163 AEALIYGILL----LQKKIRRVGNVK 184 E +I G++L L +K R++ K Sbjct: 123 PEGIIDGLVLALDILNEKERKILEEK 148 >gi|126178312|ref|YP_001046277.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Methanoculleus marisnigri JR1] gi|125861106|gb|ABN56295.1| ech hydrogenase subunit C [Methanoculleus marisnigri JR1] Length = 160 Score = 165 bits (417), Expect = 3e-39, Method: Composition-based stats. Identities = 41/133 (30%), Positives = 74/133 (55%), Gaps = 3/133 (2%) Query: 52 TGSLMWMTF---GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108 S + + C +E++ P YD+ERFG +P+ +D++++ G + + Sbjct: 5 KRSPWILHYDASSCNGCDIEVLACLTPLYDVERFGMINTGNPKHADILLITGGINTQNRE 64 Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168 + +Y+QMPEP+ VI++G CA GG + Y++V G D+++PVD+YVPGC E +I Sbjct: 65 VVENIYEQMPEPKVVIAVGVCAATGGIFRECYNIVGGIDKVIPVDVYVPGCAARPEQIID 124 Query: 169 GILLLQKKIRRVG 181 G++ + + Sbjct: 125 GVVTALSILEKKR 137 >gi|115522982|ref|YP_779893.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Rhodopseudomonas palustris BisA53] gi|115516929|gb|ABJ04913.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Rhodopseudomonas palustris BisA53] Length = 173 Score = 165 bits (417), Expect = 3e-39, Method: Composition-based stats. Identities = 47/121 (38%), Positives = 74/121 (61%), Gaps = 1/121 (0%) Query: 50 ARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108 R+ ++ + G C +E+ + YD+ERFG ASPR +DV++V G +T MA Sbjct: 42 GRSLAIREVDAGSCNGCELEIHALNNAYYDIERFGLRFVASPRHADVLLVTGPVTKNMAD 101 Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168 AL+ YD P P++V++ G CA GG + SY+VV G +++PVD+++PGCPP ++ Sbjct: 102 ALKTTYDATPSPKWVVACGDCARDGGCFAGSYAVVGGVSQVIPVDLHIPGCPPPPLQILR 161 Query: 169 G 169 G Sbjct: 162 G 162 >gi|294102253|ref|YP_003554111.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Aminobacterium colombiense DSM 12261] gi|293617233|gb|ADE57387.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Aminobacterium colombiense DSM 12261] Length = 153 Score = 165 bits (417), Expect = 4e-39, Method: Composition-based stats. Identities = 53/131 (40%), Positives = 78/131 (59%), Gaps = 7/131 (5%) Query: 53 GSLMWMTF---GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASA 109 SL MT C +E++ PRYD+ERFG +PR +DV++V G +T M Sbjct: 12 KSLWVMTCNSGSCNGCDIEIVATISPRYDIERFGMKLVGTPRHADVLVVTGPVTKYMKDR 71 Query: 110 LRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYG 169 L R+Y+Q+P+P+ V+ +G+C G ++ SYS+ D I+PVD+YV GCPP EA+I G Sbjct: 72 LLRIYNQIPDPKVVVVVGNCGASGDVFYKSYSLEGPVDNIIPVDVYVHGCPPRPEAIIEG 131 Query: 170 ----ILLLQKK 176 +L L+ K Sbjct: 132 VAKAVLKLESK 142 >gi|270263099|ref|ZP_06191369.1| hypothetical protein SOD_d01150 [Serratia odorifera 4Rx13] gi|270042787|gb|EFA15881.1| hypothetical protein SOD_d01150 [Serratia odorifera 4Rx13] Length = 265 Score = 165 bits (417), Expect = 4e-39, Method: Composition-based stats. Identities = 57/173 (32%), Positives = 86/173 (49%), Gaps = 6/173 (3%) Query: 15 SSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQAS 73 + + DA+ + + + + L R+ + + G C +E+ A Sbjct: 2 NQTLIGPRDANGQPVPITLDDSIAQLKTT-LLKDIRRSAYVYRVDCGGCNGCEIEIFAAI 60 Query: 74 MPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGG 133 P +D ERFG SPR +D+++ G +T M R + P+P+ IS G+C N G Sbjct: 61 SPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRIPAIRAWQASPDPKICISYGACGNSG 120 Query: 134 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILL----LQKKIRRVGN 182 G +H Y V G DRIVPVD+Y+PGCPPT A IYG + L++KI R + Sbjct: 121 GIFHDLYCVWGGTDRIVPVDVYIPGCPPTPAATIYGFAMALGLLEQKIHRQQH 173 >gi|90407577|ref|ZP_01215758.1| hydrogenase-4 component I [Psychromonas sp. CNPT3] gi|90311280|gb|EAS39384.1| hydrogenase-4 component I [Psychromonas sp. CNPT3] Length = 261 Score = 164 bits (416), Expect = 4e-39, Method: Composition-based stats. Identities = 54/138 (39%), Positives = 78/138 (56%), Gaps = 5/138 (3%) Query: 46 LVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTN 104 L R+ + + G C +E+ A+ P +D ERFG ASPR +D+++ G +T Sbjct: 32 LKEIKRSAYVYRVDCGGCNGCEIEIFAATTPVFDTERFGIKIVASPRHADILLFTGAVTR 91 Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164 M R Y+ P+P+ VIS G+C GG +H Y V G D+IVPVD+Y+PGCPPT Sbjct: 92 AMRMPALRAYEAAPDPKIVISYGACGCDGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPA 151 Query: 165 ALIYGILL----LQKKIR 178 A IYG + L +K++ Sbjct: 152 ATIYGFAMALGLLDQKLK 169 >gi|27381455|ref|NP_772984.1| hydrogenase-3 subunit G [Bradyrhizobium japonicum USDA 110] gi|27354623|dbj|BAC51609.1| hycG [Bradyrhizobium japonicum USDA 110] Length = 177 Score = 164 bits (416), Expect = 4e-39, Method: Composition-based stats. Identities = 49/129 (37%), Positives = 78/129 (60%), Gaps = 1/129 (0%) Query: 52 TGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASAL 110 + S+ + G C +E+ + YD+ERFG ASPR +DV++V G +T M AL Sbjct: 44 SLSIREVDAGSCNGCELEIHALNNAYYDVERFGLRFVASPRHADVLMVTGPVTKNMRDAL 103 Query: 111 RRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGI 170 R Y P+P++V+++G CA GG + SY+VV G ++VPVD+++PGCPP ++ G+ Sbjct: 104 ERTYHATPDPKWVVAVGDCARDGGCFAGSYAVVGGVSQVVPVDLHIPGCPPPPTTILRGL 163 Query: 171 LLLQKKIRR 179 L L + + Sbjct: 164 LALLDQAAK 172 >gi|90578223|ref|ZP_01234034.1| hydrogenase-4 component I [Vibrio angustum S14] gi|90441309|gb|EAS66489.1| hydrogenase-4 component I [Vibrio angustum S14] Length = 277 Score = 164 bits (416), Expect = 4e-39, Method: Composition-based stats. Identities = 56/141 (39%), Positives = 81/141 (57%), Gaps = 6/141 (4%) Query: 44 DQLVTWARTGSLMWMT--FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGT 101 D L+ R + ++ G C +E+ A+ P +D ERFG ASPR +D+++ G Sbjct: 29 DALIKQIRRSAYVYRVDCGGCNACEIEIFAATTPVFDTERFGIKVVASPRHADILLFTGA 88 Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP 161 +T M + R Y+ P+P+ VIS G+C GG +H Y V G D+IVPVD+Y+PGCPP Sbjct: 89 VTRAMRAPALRAYEAAPDPKIVISYGACGCDGGIFHDLYCVWGGTDKIVPVDVYIPGCPP 148 Query: 162 TAEALIYGIL----LLQKKIR 178 T A IYG LL +K++ Sbjct: 149 TPAATIYGFAVALGLLDQKLK 169 >gi|20806654|ref|NP_621825.1| NADH:ubiquinone oxidoreductase 20 kD subunit and related Fe-S oxidoreductase [Thermoanaerobacter tengcongensis MB4] gi|20515103|gb|AAM23429.1| NADH:ubiquinone oxidoreductase 20 kD subunit and related Fe-S oxidoreductases [Thermoanaerobacter tengcongensis MB4] Length = 155 Score = 164 bits (416), Expect = 4e-39, Method: Composition-based stats. Identities = 48/149 (32%), Positives = 89/149 (59%), Gaps = 7/149 (4%) Query: 43 VDQLVTWARTGSLMWMTF---GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVA 99 + + + + S + + C +E++ P YD+ERFG +P+ +D+++V Sbjct: 3 LKEFIEKSFKKSPWVLHYNASSCNGCDIEILACMTPIYDMERFGMMNVGNPKHADILVVT 62 Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGC 159 G++ + L+ +YDQMPEP+ V+++G CA GG + +Y+V+ G D+++PVD+YVPGC Sbjct: 63 GSVNTRNKDVLKNIYDQMPEPKVVVAVGVCAATGGVFRDTYNVLGGVDKVIPVDVYVPGC 122 Query: 160 PPTAEALIYGILL----LQKKIRRVGNVK 184 P EA+I G+ L++K +++G + Sbjct: 123 PAKPEAIIDGLYKATEILKEKYKKMGKAE 151 >gi|20808124|ref|NP_623295.1| Ni,Fe-hydrogenase III small subunit [Thermoanaerobacter tengcongensis MB4] gi|254479096|ref|ZP_05092449.1| NADH ubiquinone oxidoreductase, 20 Kd subunit family [Carboxydibrachium pacificum DSM 12653] gi|20516711|gb|AAM24899.1| Ni,Fe-hydrogenase III small subunit [Thermoanaerobacter tengcongensis MB4] gi|214034978|gb|EEB75699.1| NADH ubiquinone oxidoreductase, 20 Kd subunit family [Carboxydibrachium pacificum DSM 12653] Length = 247 Score = 164 bits (416), Expect = 5e-39, Method: Composition-based stats. Identities = 53/151 (35%), Positives = 80/151 (52%), Gaps = 7/151 (4%) Query: 39 LVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 L + ++ R+ L + G C +E+ A P YD ERFG +SPR +D+++ Sbjct: 10 LKAKLKNVIK--RSAYLYRVDCGGCNGCEIEIFAAISPVYDPERFGIKIVSSPRHADILL 67 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 G +T M R Y P+P+ V++ G+C GG +H Y V G D+ PVD+Y+P Sbjct: 68 FTGPMTRAMRLPAIRAYKAAPDPKIVVAYGACGCSGGIFHDCYCVWGGIDKFFPVDVYIP 127 Query: 158 GCPPTAEALIYGIL----LLQKKIRRVGNVK 184 GCPPT A +YG+ LL +KI+ V+ Sbjct: 128 GCPPTPAATLYGLAVALDLLHQKIKGEQFVE 158 >gi|90410736|ref|ZP_01218751.1| hydrogenase-4 component I [Photobacterium profundum 3TCK] gi|90328367|gb|EAS44665.1| hydrogenase-4 component I [Photobacterium profundum 3TCK] Length = 277 Score = 164 bits (416), Expect = 5e-39, Method: Composition-based stats. Identities = 52/129 (40%), Positives = 75/129 (58%), Gaps = 2/129 (1%) Query: 44 DQLVTWARTGSLMWMT--FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGT 101 D L+ R + ++ G C +E+ A+ P +D ERFG ASPR +D+++ G Sbjct: 29 DALIKQIRRSAYVYRVDCGGCNGCEIEIFAATTPVFDTERFGIKVVASPRHADILLFTGA 88 Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP 161 +T M + R Y+ P+P+ V+S G+C GG +H Y V G D+IVPVD+Y+PGCPP Sbjct: 89 VTRAMRAPALRAYEAAPDPKIVVSYGACGCDGGIFHDLYCVWGGTDKIVPVDVYIPGCPP 148 Query: 162 TAEALIYGI 170 T A IYG Sbjct: 149 TPAATIYGF 157 >gi|312136850|ref|YP_004004187.1| NADH ubiquinone oxidoreductase 20 kda subunit [Methanothermus fervidus DSM 2088] gi|311224569|gb|ADP77425.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanothermus fervidus DSM 2088] Length = 157 Score = 164 bits (415), Expect = 5e-39, Method: Composition-based stats. Identities = 48/132 (36%), Positives = 81/132 (61%), Gaps = 7/132 (5%) Query: 44 DQLVTWARTG----SLMWMTF---GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVM 96 +++ + S+ F G C +E + A P YD+ER G +SPR +D++ Sbjct: 3 NKITNFFTKNILRKSMWLFHFNSGGCNGCDIEFVAALTPLYDVERMGIQLVSSPRHADIL 62 Query: 97 IVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV 156 +V G +T + S+L+ +Y+QMP P+YVI++G+CA G + SY+V+ G D+++PVD+Y+ Sbjct: 63 VVTGPVTLQSLSSLKLIYEQMPSPKYVIAVGNCACDGCVFKDSYNVLEGVDKVLPVDVYI 122 Query: 157 PGCPPTAEALIY 168 PGCPP+ A+ Sbjct: 123 PGCPPSPRAIFR 134 >gi|295099918|emb|CBK89007.1| ech hydrogenase subunit C [Eubacterium cylindroides T2-87] Length = 143 Score = 164 bits (415), Expect = 6e-39, Method: Composition-based stats. Identities = 40/134 (29%), Positives = 77/134 (57%), Gaps = 3/134 (2%) Query: 52 TGSLMWMT---FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108 S + C +E++ +MPR+D+ERFG +P +D++++ G + + A Sbjct: 5 KKSPWMLHHDASSCNGCDIEVLACTMPRFDIERFGIINTGNPFHADILLITGGVNAQSAE 64 Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168 ++++Y QMP P+ V+++G CA GG + Y+++ G D+++PVD+YVPGC +++I Sbjct: 65 VVKQIYSQMPHPKVVVAVGICACTGGVFKDCYNILGGVDKVIPVDVYVPGCAARPQSIID 124 Query: 169 GILLLQKKIRRVGN 182 G+L + + Sbjct: 125 GVLKAVDILEKKRE 138 >gi|326389233|ref|ZP_08210801.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Thermoanaerobacter ethanolicus JW 200] gi|325994596|gb|EGD53020.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Thermoanaerobacter ethanolicus JW 200] Length = 155 Score = 163 bits (414), Expect = 7e-39, Method: Composition-based stats. Identities = 49/149 (32%), Positives = 88/149 (59%), Gaps = 7/149 (4%) Query: 43 VDQLVTWARTGSLMWMTF---GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVA 99 + + V + S + + C +E++ P YD+ERFG +P+ +D+++V Sbjct: 3 LKEFVEKSFKKSPWVLHYNCSSCNGCDIEILACMTPLYDMERFGMVNVGNPKHADILVVT 62 Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGC 159 GT+ + L+ +YDQMP+P+ V+++G CA GG + +Y+V+ G D+++PVD+YVPGC Sbjct: 63 GTVNTRNKEVLKNIYDQMPDPKVVVAVGVCAATGGVFREAYNVIGGIDKVIPVDVYVPGC 122 Query: 160 PPTAEALIYGILL----LQKKIRRVGNVK 184 P EA+I G+ L++K ++G + Sbjct: 123 PAKPEAIIDGLYKAAEILKEKYEKMGKAE 151 >gi|125975501|ref|YP_001039411.1| ech hydrogenase subunit C [Clostridium thermocellum ATCC 27405] gi|256004211|ref|ZP_05429194.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Clostridium thermocellum DSM 2360] gi|281419466|ref|ZP_06250480.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Clostridium thermocellum JW20] gi|125715726|gb|ABN54218.1| ech hydrogenase subunit C [Clostridium thermocellum ATCC 27405] gi|255991801|gb|EEU01900.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Clostridium thermocellum DSM 2360] gi|281406872|gb|EFB37136.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Clostridium thermocellum JW20] gi|316939621|gb|ADU73655.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Clostridium thermocellum DSM 1313] Length = 145 Score = 163 bits (414), Expect = 8e-39, Method: Composition-based stats. Identities = 41/134 (30%), Positives = 76/134 (56%), Gaps = 3/134 (2%) Query: 52 TGSLMWMTF---GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108 S + + C +E++ P YD+ERFG +P+ +D++++ G++ + S Sbjct: 5 KKSPWILHYDGSSCNGCDIEVLACLTPLYDIERFGVINTGNPKHADILLITGSINEQNKS 64 Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168 ++++Y+QM +P+ V+++G CA GG + Y+V G D+I+PVD+YVPGC EA+I Sbjct: 65 VVKQLYEQMADPKVVVAVGICAATGGIFSECYNVSGGVDKIIPVDVYVPGCAARPEAIID 124 Query: 169 GILLLQKKIRRVGN 182 G++ + Sbjct: 125 GVVKALGILEERQK 138 >gi|258646992|ref|ZP_05734461.1| NADH dehydrogenase I, B subunit [Dialister invisus DSM 15470] gi|260404433|gb|EEW97980.1| NADH dehydrogenase I, B subunit [Dialister invisus DSM 15470] Length = 156 Score = 163 bits (414), Expect = 8e-39, Method: Composition-based stats. Identities = 49/136 (36%), Positives = 82/136 (60%), Gaps = 6/136 (4%) Query: 47 VTWARTGSLMWMTFGLAC--CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTN 104 + + R + + G +C C +E++ MP YD+ERFG P+ +DV +V G + Sbjct: 1 MAYIRKSAWLIHYDGSSCNGCDIEVLACLMPLYDVERFGIINTGDPKHADVFLVTGGVNV 60 Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164 + +R++Y+QMPEP+ V+++G+CA GG + Y+++ G D VPVD+YVPGC E Sbjct: 61 QNLPVVRQIYEQMPEPKVVVAVGTCACTGGIFKDCYNMIGGMDHAVPVDVYVPGCAARPE 120 Query: 165 ALIYGILL----LQKK 176 A+I G++ L++K Sbjct: 121 AIIDGVVKGLGILEEK 136 >gi|315180292|gb|ADT87206.1| hydrogenase-4 component I [Vibrio furnissii NCTC 11218] Length = 272 Score = 163 bits (414), Expect = 8e-39, Method: Composition-based stats. Identities = 52/122 (42%), Positives = 74/122 (60%), Gaps = 4/122 (3%) Query: 60 FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119 G C +E+ A+ P YD ERFG ASPR +D+++ G +T M + R Y+ P+ Sbjct: 47 GGCNACEIEIFAATTPVYDTERFGIKVVASPRHADILLFTGAVTRAMRAPALRAYEAAPD 106 Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQK 175 P+ V+S G+C GG +H Y V G D+IVPVD+Y+PGCPPT A +YG LL++ Sbjct: 107 PKIVVSYGACGCDGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAVALGLLEQ 166 Query: 176 KI 177 K+ Sbjct: 167 KM 168 >gi|152992439|ref|YP_001358160.1| NADH-quinone oxidoreductase, chain B [Sulfurovum sp. NBC37-1] gi|151424300|dbj|BAF71803.1| NADH-quinone oxidoreductase, chain B [Sulfurovum sp. NBC37-1] Length = 140 Score = 163 bits (413), Expect = 9e-39, Method: Composition-based stats. Identities = 53/120 (44%), Positives = 84/120 (70%) Query: 59 TFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMP 118 F CC++EM A PRYD ER+G+ P +PRQ+DV+++ G ++ K+ AL R Y QMP Sbjct: 3 HFCTGCCSLEMAAAMGPRYDWERYGYMPTPTPRQADVLMITGLVSKKILPALLRTYAQMP 62 Query: 119 EPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 EP+YV+++G+C+ GG Y+ S SV++ I+P D+++ GCPP EA+I G+ +++KI+ Sbjct: 63 EPKYVVALGACSFDGGPYNDSLSVIKNPTEILPADVFIAGCPPKPEAIIEGLEQVKQKIK 122 >gi|269140240|ref|YP_003296941.1| hydrogenase activity [Edwardsiella tarda EIB202] gi|267985901|gb|ACY85730.1| hydrogenase activity [Edwardsiella tarda EIB202] gi|304560070|gb|ADM42734.1| Formate hydrogenlyase subunit 7 [Edwardsiella tarda FL6-60] Length = 273 Score = 163 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 58/178 (32%), Positives = 90/178 (50%), Gaps = 6/178 (3%) Query: 6 VNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFG-LAC 64 ++Q I + + + DA+ + + + + L R+ + + G Sbjct: 1 MSQIITTPPAGALIGPRDANGQPVPITLDAQAARLKQT-LLKDIRRSAYVYRVDCGGCNG 59 Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E+ A P +D ERFG ASPR +D+++ G +T M R Y P+P+ VI Sbjct: 60 CEIEIFAAISPLFDAERFGIKVVASPRHADILLFTGAVTRAMRIPAIRAYQSAPDPKIVI 119 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKKIR 178 S G+C GG +H Y V G D+IVPVD+Y+PGCPPT A +YG LL +K++ Sbjct: 120 SYGACGCSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAVALGLLDQKLK 177 >gi|330829825|ref|YP_004392777.1| formate hydrogenlyase subunit 7 [Aeromonas veronii B565] gi|328804961|gb|AEB50160.1| Formate hydrogenlyase subunit 7 [Aeromonas veronii B565] Length = 271 Score = 163 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 53/150 (35%), Positives = 81/150 (54%), Gaps = 7/150 (4%) Query: 40 VTSVDQ--LVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVM 96 +T + + L R+ + + G C +E+ P +D ERFG ASPR +D++ Sbjct: 27 ITKLKKTLLKDIRRSAYVYRVDCGGCNACEIEIFATITPLFDAERFGIKVVASPRHADIL 86 Query: 97 IVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV 156 + G +T M R Y+ P+P+ I+ G+C GG +H Y V G D+IVPVD+Y+ Sbjct: 87 LFTGAVTRAMRVPALRAYEAAPDPKICIAYGACGCDGGIFHDLYCVWGGTDKIVPVDVYI 146 Query: 157 PGCPPTAEALIYGIL----LLQKKIRRVGN 182 PGCPPT A IYG LL++K++ + Sbjct: 147 PGCPPTPAATIYGFAVALGLLEQKLKATSH 176 >gi|295401603|ref|ZP_06811571.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Geobacillus thermoglucosidasius C56-YS93] gi|294976370|gb|EFG51980.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Geobacillus thermoglucosidasius C56-YS93] Length = 247 Score = 163 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 49/151 (32%), Positives = 81/151 (53%), Gaps = 7/151 (4%) Query: 39 LVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 L + ++ R+ + + G C +E+ A P +D ERFG +PR +D+++ Sbjct: 10 LKAKLKNVIK--RSVYVYRVDCGGCNGCEIEIFSAISPTFDAERFGIKVVPTPRHADILL 67 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 + G +T M R Y P+P+ V++ G+C+ GG +H Y V G + PVD+Y+P Sbjct: 68 ITGPMTRAMRLPAIRAYQAAPDPKIVVAYGACSCSGGIFHDCYGVWGGAESAFPVDVYIP 127 Query: 158 GCPPTAEALIYGILL----LQKKIRRVGNVK 184 GCPPT A +YG+ + LQ+KI+ V+ Sbjct: 128 GCPPTPAATLYGLAMALDLLQQKIKGEQFVE 158 >gi|189218530|ref|YP_001939171.1| formate hydrogenlyase subunit 7 [Methylacidiphilum infernorum V4] gi|161075799|gb|ABX56647.1| putative formate hydrogenlyase [Methylacidiphilum infernorum V4] gi|189185388|gb|ACD82573.1| Formate hydrogenlyase subunit 7 [Methylacidiphilum infernorum V4] Length = 177 Score = 163 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 50/126 (39%), Positives = 78/126 (61%), Gaps = 2/126 (1%) Query: 50 ARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108 R+ ++ + G C +E+ + P YD+ERFG ASPR +D+++V G +T M Sbjct: 49 GRSLAIREVDAGSCNGCELEIHALNNPFYDIERFGIRFVASPRHADLLLVTGPVTKNMVE 108 Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRG-CDRIVPVDIYVPGCPPTAEALI 167 AL+R YD MP P++V++ G CA G G + SY+VV+ + I+PVD+ + GCPPT L+ Sbjct: 109 ALKRTYDCMPHPKWVVAAGDCALGRGVFSQSYAVVKEGVEAIIPVDLRIDGCPPTPLDLL 168 Query: 168 YGILLL 173 G++ L Sbjct: 169 RGLVYL 174 >gi|312110881|ref|YP_003989197.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Geobacillus sp. Y4.1MC1] gi|311215982|gb|ADP74586.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Geobacillus sp. Y4.1MC1] Length = 247 Score = 163 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 50/151 (33%), Positives = 81/151 (53%), Gaps = 7/151 (4%) Query: 39 LVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 L + ++ R+ + + G C +E+ A P +D ERFG +PR +D+++ Sbjct: 10 LKAKLKNVIK--RSVYVYRVDCGGCNGCEIEIFSAISPTFDAERFGIKVVPTPRHADILL 67 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 + G +T M R Y P+P+ V++ G+C+ GG +H Y V G + PVD+Y+P Sbjct: 68 ITGPMTRAMRLPAIRAYQAAPDPKIVVAYGACSCSGGIFHDCYGVWGGAESAFPVDVYIP 127 Query: 158 GCPPTAEALIYGIL----LLQKKIRRVGNVK 184 GCPPT A +YG+ LLQ+KI+ V+ Sbjct: 128 GCPPTPAATLYGLAIALDLLQQKIKGEQFVE 158 >gi|12001974|gb|AAG43130.1|AF060512_1 My017 protein [Homo sapiens] Length = 214 Score = 163 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 78/193 (40%), Positives = 104/193 (53%), Gaps = 27/193 (13%) Query: 6 VNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACC 65 V+Q + + S + + + + ++V +D LV WAR SL MTFGLACC Sbjct: 30 VHQSVATDGPSSTQPALPKARAVAPKPSSRGEYVVAKLDDLVNWARRSSLWPMTFGLACC 89 Query: 66 AVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVIS 125 AVEMM + PRYD++RFG RASPRQSDVMIVAGTLTNKMA ALR+ P P Sbjct: 90 AVEMMHMAAPRYDMDRFGVVFRASPRQSDVMIVAGTLTNKMAPALRKS---PPRP----- 141 Query: 126 MGSCANGGGYYHYSYSVVRGCDRIVPVDI--------------YVPGCPPTAEALIYGIL 171 + G + +R R++P+ + P P TAEAL+YGIL Sbjct: 142 -----DAGAALRGLHGELRQRGRLLPLFLLGGEGLRPHRARGHLHPRLPTTAEALLYGIL 196 Query: 172 LLQKKIRRVGNVK 184 LQ+KI+R ++ Sbjct: 197 QLQRKIKRERRLQ 209 >gi|260768583|ref|ZP_05877517.1| formate hydrogenlyase subunit 7 [Vibrio furnissii CIP 102972] gi|260616613|gb|EEX41798.1| formate hydrogenlyase subunit 7 [Vibrio furnissii CIP 102972] Length = 272 Score = 163 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 52/122 (42%), Positives = 74/122 (60%), Gaps = 4/122 (3%) Query: 60 FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119 G C +E+ A+ P YD ERFG ASPR +D+++ G +T M + R Y+ P+ Sbjct: 47 GGCNACEIEIFAATTPVYDTERFGIKVVASPRHADILLFTGAVTRAMRAPALRAYEAAPD 106 Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQK 175 P+ V+S G+C GG +H Y V G D+IVPVD+Y+PGCPPT A +YG LL++ Sbjct: 107 PKIVVSYGACGCDGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAVALGLLEQ 166 Query: 176 KI 177 K+ Sbjct: 167 KM 168 >gi|73669936|ref|YP_305951.1| ech hydrogenase subunit C [Methanosarcina barkeri str. Fusaro] gi|72397098|gb|AAZ71371.1| ech hydrogenase subunit C [Methanosarcina barkeri str. Fusaro] Length = 163 Score = 163 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 52/140 (37%), Positives = 83/140 (59%), Gaps = 7/140 (5%) Query: 52 TGSLMWMTF---GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108 S + C +E++ P YD ERFG +P+Q+D+M+V G + K + Sbjct: 4 AKSPWIVHVNCNSCNGCDIEVIACLTPLYDAERFGVLNIGTPKQADIMVVTGAVNYKNVN 63 Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168 L +Y+Q+P+P+ VI++G+CA+ GG +H Y+V+ G D+++PVDIYVPGC P EA++ Sbjct: 64 VLINIYNQIPDPKVVIAVGACASTGGIFHSCYNVIGGVDQVIPVDIYVPGCCPRPEAILD 123 Query: 169 GILL----LQKKIRRVGNVK 184 GI+ L+ K +R K Sbjct: 124 GIIAALPILEDKKKRNIKGK 143 >gi|73748664|ref|YP_307903.1| hydrogenase, group 4, EchC subunit [Dehalococcoides sp. CBDB1] gi|147669423|ref|YP_001214241.1| ech hydrogenase subunit C [Dehalococcoides sp. BAV1] gi|289432690|ref|YP_003462563.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Dehalococcoides sp. GT] gi|73660380|emb|CAI82987.1| hydrogenase, group 4, EchC subunit [Dehalococcoides sp. CBDB1] gi|146270371|gb|ABQ17363.1| ech hydrogenase subunit C [Dehalococcoides sp. BAV1] gi|288946410|gb|ADC74107.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Dehalococcoides sp. GT] Length = 155 Score = 162 bits (411), Expect = 1e-38, Method: Composition-based stats. Identities = 48/131 (36%), Positives = 77/131 (58%), Gaps = 3/131 (2%) Query: 45 QLVTWARTGSLMWMTF---GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGT 101 VT ++ S + F C +E++ P YD+ERFG +P+ SDV++V G Sbjct: 2 DFVTKSQIKSPWLLHFDCGSCNGCDIEILACLTPLYDVERFGIVNMGNPKHSDVLLVTGP 61 Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP 161 + LR +Y+QMPEP+ VI +G+C GG +H +++ G D+++PVD+YVPGC Sbjct: 62 ANKRNYRVLRNLYEQMPEPKVVIVIGTCGCSGGVFHNCPNILGGVDKVIPVDVYVPGCAA 121 Query: 162 TAEALIYGILL 172 EA+I G+++ Sbjct: 122 RPEAIIDGVVM 132 >gi|305664299|ref|YP_003860587.1| ech hydrogenase subunit C [Ignisphaera aggregans DSM 17230] gi|304378868|gb|ADM28707.1| ech hydrogenase subunit C [Ignisphaera aggregans DSM 17230] Length = 145 Score = 162 bits (411), Expect = 1e-38, Method: Composition-based stats. Identities = 56/135 (41%), Positives = 83/135 (61%), Gaps = 3/135 (2%) Query: 52 TGSLMWMTF---GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108 S + F C +E++ A P YD ER+G S R D++IV G +T K A Sbjct: 6 RYSPWLVHFNTGACNGCDIEVLAAITPLYDPERYGIKLAPSIRHGDILIVTGVVTKKAAE 65 Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168 L+R+Y QMP +YV+++G+CA GG + SYSVV G ++++PVD+YVPGCPP E ++ Sbjct: 66 RLKRLYSQMPNLKYVVAVGACAYDGGVFKGSYSVVGGVNKVIPVDVYVPGCPPRPEEILR 125 Query: 169 GILLLQKKIRRVGNV 183 +LLL ++ + V NV Sbjct: 126 ALLLLLQREKGVENV 140 >gi|256826557|ref|YP_003150516.1| Ni,Fe-hydrogenase III small subunit [Cryptobacterium curtum DSM 15641] gi|256582700|gb|ACU93834.1| Ni,Fe-hydrogenase III small subunit [Cryptobacterium curtum DSM 15641] Length = 283 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 48/169 (28%), Positives = 81/169 (47%), Gaps = 1/169 (0%) Query: 5 TVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFG-LA 63 + I+ G + S ++ ++ + L R+ + + G Sbjct: 11 STQSSIMQGYETRSTATAQKLQYQLEPKVLDQKIAEAKAALLNDIKRSVYIYRVDCGGCN 70 Query: 64 CCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYV 123 C +E+ P +D ERFG ASPR +D+++ G +T M R Y+ P+P+ + Sbjct: 71 GCEIEIFGTLTPVFDAERFGIKNMASPRHADILVYTGAVTRAMRLPALRAYEAAPDPKLI 130 Query: 124 ISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILL 172 +S G+C GG +H +Y V G D++ PVD+Y+PGCPP+ IYG + Sbjct: 131 VSYGACGCTGGIFHDNYCVWGGTDKLFPVDVYIPGCPPSPAQTIYGFAM 179 >gi|297545022|ref|YP_003677324.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296842797|gb|ADH61313.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 155 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 51/149 (34%), Positives = 87/149 (58%), Gaps = 7/149 (4%) Query: 43 VDQLVTWARTGSLMWMTF---GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVA 99 + + + + S + + C +E++ P YD+ERFG +P+ +D+++V Sbjct: 3 LKEFIEKSFKKSPWVIHYDCGSCNGCDIELLSCMTPLYDMERFGMVNVGNPKHADILVVT 62 Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGC 159 GT+ +K L+ +YDQMPEP+ V+++G CA GG + Y+VV G D+I+PVD+YVPGC Sbjct: 63 GTVNHKNKVVLKNIYDQMPEPKVVVAVGVCAATGGIFRECYNVVGGVDKIIPVDVYVPGC 122 Query: 160 PPTAEALIYGILL----LQKKIRRVGNVK 184 P EA+I G+ L++K ++ + Sbjct: 123 PAKPEAIIDGLYKATEILKEKYDKMAKTE 151 >gi|260597692|ref|YP_003210263.1| formate hydrogenlyase subunit 7 [Cronobacter turicensis z3032] gi|260216869|emb|CBA30407.1| Formate hydrogenlyase subunit 7 [Cronobacter turicensis z3032] Length = 254 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 52/150 (34%), Positives = 77/150 (51%), Gaps = 5/150 (3%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPR 91 + L R+ + + G C +E+ P +D ERFG SPR Sbjct: 17 TVEESIARMKTSLLKNIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPR 76 Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151 +D+++ G +T M S R ++ P+P+ IS G+C N GG +H Y V G D+IVP Sbjct: 77 HADILLFTGAVTRAMRSPALRAWESAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVP 136 Query: 152 VDIYVPGCPPTAEALIYGILL----LQKKI 177 VD+Y+PGCPPT A +YG + L++KI Sbjct: 137 VDVYIPGCPPTPAATLYGFAMALGLLEQKI 166 >gi|156934233|ref|YP_001438149.1| hypothetical protein ESA_02063 [Cronobacter sakazakii ATCC BAA-894] gi|156532487|gb|ABU77313.1| hypothetical protein ESA_02063 [Cronobacter sakazakii ATCC BAA-894] Length = 254 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 52/150 (34%), Positives = 77/150 (51%), Gaps = 5/150 (3%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPR 91 + L R+ + + G C +E+ P +D ERFG SPR Sbjct: 17 TVEESIARMKTSLLKNIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPR 76 Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151 +D+++ G +T M S R ++ P+P+ IS G+C N GG +H Y V G D+IVP Sbjct: 77 HADILLFTGAVTRAMRSPALRAWESAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVP 136 Query: 152 VDIYVPGCPPTAEALIYGILL----LQKKI 177 VD+Y+PGCPPT A +YG + L++KI Sbjct: 137 VDVYIPGCPPTPAATLYGFAMALGLLEQKI 166 >gi|83591661|ref|YP_425413.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit [Rhodospirillum rubrum ATCC 11170] gi|83574575|gb|ABC21126.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit [Rhodospirillum rubrum ATCC 11170] Length = 173 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 53/122 (43%), Positives = 74/122 (60%), Gaps = 3/122 (2%) Query: 52 TGSLMWMT---FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108 SL C +E + A P YD ERFG SPR +DV++++G +T Sbjct: 13 KRSLWVFHANAGACNGCDIEEVNAFTPYYDAERFGLKLVGSPRHADVLLISGPVTRTAEP 72 Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168 LRR+Y+Q P P+ VI+ GSCA GGG + SY V+ G D++VPVD Y+PGCPP EA+++ Sbjct: 73 RLRRLYEQTPNPKVVIACGSCAVGGGMWFDSYHVLGGADKVVPVDFYIPGCPPRPEAILW 132 Query: 169 GI 170 G+ Sbjct: 133 GV 134 >gi|289578801|ref|YP_003477428.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Thermoanaerobacter italicus Ab9] gi|289528514|gb|ADD02866.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Thermoanaerobacter italicus Ab9] Length = 155 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 51/149 (34%), Positives = 87/149 (58%), Gaps = 7/149 (4%) Query: 43 VDQLVTWARTGSLMWMTF---GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVA 99 + + + + S + + C +E++ P YD+ERFG +P+ +D+++V Sbjct: 3 LKEFIEKSFKKSPWVIHYDCGSCNGCDIELLSCMTPLYDMERFGMVNVGNPKHADILVVT 62 Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGC 159 GT+ +K L+ +YDQMPEP+ V+++G CA GG + Y+VV G D+I+PVD+YVPGC Sbjct: 63 GTVNHKNKVVLKNIYDQMPEPKVVVAVGVCAATGGIFRECYNVVGGVDKIIPVDVYVPGC 122 Query: 160 PPTAEALIYGILL----LQKKIRRVGNVK 184 P EA+I G+ L++K ++ + Sbjct: 123 PAKPEAIIDGLYKATEILKEKYDKMAKAE 151 >gi|147919461|ref|YP_686799.1| hydrogenase, small subunit-like protein (HycG-like) [uncultured methanogenic archaeon RC-I] gi|110622195|emb|CAJ37473.1| hydrogenase, small subunit-like protein (HycG-like) [uncultured methanogenic archaeon RC-I] Length = 247 Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 53/125 (42%), Positives = 78/125 (62%), Gaps = 1/125 (0%) Query: 49 WARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMA 107 + R+ ++ + G C VE+ S YD+ERFG ASPR +D ++V G +T M Sbjct: 113 FGRSLAIREVDAGSCNGCEVEVNSLSNAIYDIERFGLHIVASPRHADALLVTGPVTRNME 172 Query: 108 SALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALI 167 L + Y+ P+P+ VI+MG+CA GG + SY+V G D +VPVD+Y+PGCPP +A+I Sbjct: 173 RGLMQSYNATPDPKMVIAMGACAITGGIFRDSYAVYNGVDALVPVDVYIPGCPPRPQAII 232 Query: 168 YGILL 172 GI+L Sbjct: 233 QGIML 237 >gi|215488035|ref|YP_002330466.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit [Escherichia coli O127:H6 str. E2348/69] gi|215266107|emb|CAS10532.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit [Escherichia coli O127:H6 str. E2348/69] Length = 255 Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 54/154 (35%), Positives = 78/154 (50%), Gaps = 5/154 (3%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPR 91 + L R+ + + FG C +E+ P +D ERFG SPR Sbjct: 18 TVDESIASMKASLLKKIKRSAYVYRVDFGGCNGCEIEIFATLSPLFDAERFGIKVVPSPR 77 Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151 +D+++ G +T M S R + P+P+ IS G+C N GG +H Y V G D+IVP Sbjct: 78 HADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVP 137 Query: 152 VDIYVPGCPPTAEALIYGILL----LQKKIRRVG 181 VD+Y+PGCPPT A +YG + L++KI G Sbjct: 138 VDVYIPGCPPTPAATLYGFAMALGLLEQKIHARG 171 >gi|297526163|ref|YP_003668187.1| NADH-quinone oxidoreductase, B subunit [Staphylothermus hellenicus DSM 12710] gi|297255079|gb|ADI31288.1| NADH-quinone oxidoreductase, B subunit [Staphylothermus hellenicus DSM 12710] Length = 179 Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 57/138 (41%), Positives = 79/138 (57%) Query: 46 LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNK 105 W R+ S+ + + AC A+E+ + D ER+G SPRQ+DV++V G +T K Sbjct: 11 FAEWVRSRSIWMIHYCTACGAIELPPNIVAPLDAERWGIMAAPSPRQADVLVVMGYVTKK 70 Query: 106 MASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEA 165 L R+Y QMPEPRYV+ +C GG Y SYS ++ D +PVD++VPGC P AE Sbjct: 71 TLKILMRLYHQMPEPRYVMVGCNCPATGGLYWDSYSTIKAVDEFLPVDVWVPGCMPRAED 130 Query: 166 LIYGILLLQKKIRRVGNV 183 + G L L+KKI V Sbjct: 131 WLQGFLRLRKKISEGRIV 148 >gi|282856067|ref|ZP_06265353.1| hydrogenase-4 component I [Pyramidobacter piscolens W5455] gi|282586088|gb|EFB91370.1| hydrogenase-4 component I [Pyramidobacter piscolens W5455] Length = 156 Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 51/123 (41%), Positives = 75/123 (60%), Gaps = 3/123 (2%) Query: 53 GSLMWMT---FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASA 109 SL T C +E++ + PRYD+ER G +PR +DV++V G +T M Sbjct: 12 KSLWVFTLNSGSCNGCDIEIVASLTPRYDIERLGLKLTGTPRHADVLLVTGPVTRFMEPK 71 Query: 110 LRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYG 169 LR++Y Q+P+P+ VI++G+CA G ++ SY++V DRIVPVD+YV GC EALI G Sbjct: 72 LRQIYAQIPDPKVVIAVGNCATSGDVFYKSYNLVGPVDRIVPVDVYVHGCAIRPEALIEG 131 Query: 170 ILL 172 + Sbjct: 132 VAK 134 >gi|117617723|ref|YP_857018.1| hydrogenase-4 component I [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117559130|gb|ABK36078.1| hydrogenase-4 component I [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 271 Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 50/127 (39%), Positives = 72/127 (56%), Gaps = 4/127 (3%) Query: 60 FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119 G C +E+ P +D ERFG ASPR +D+++ G +T M R Y+ P+ Sbjct: 50 GGCNACEIEIFATITPLFDAERFGIKVVASPRHADILLFTGAVTRAMRVPALRAYEAAPD 109 Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQK 175 P+ I+ G+C GG +H Y V G D+IVPVD+Y+PGCPPT A IYG LL++ Sbjct: 110 PKICIAYGACGCDGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATIYGFAVALGLLEQ 169 Query: 176 KIRRVGN 182 K++ + Sbjct: 170 KLKATSH 176 >gi|158425979|ref|YP_001527271.1| NADH ubiquinone oxidoreductase [Azorhizobium caulinodans ORS 571] gi|158332868|dbj|BAF90353.1| NADH ubiquinone oxidoreductase [Azorhizobium caulinodans ORS 571] gi|211948048|gb|ACJ13747.1| HyqI [Azorhizobium caulinodans ORS 571] Length = 170 Score = 162 bits (409), Expect = 2e-38, Method: Composition-based stats. Identities = 48/128 (37%), Positives = 75/128 (58%), Gaps = 1/128 (0%) Query: 50 ARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108 R ++ + G C +E+ S YDLERFG ASPR +DV++V G +T M Sbjct: 42 GRGLAIRQVDAGSCNGCELEIHALSNAYYDLERFGLRFVASPRHADVLLVTGPVTTNMRE 101 Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168 AL R Y+ P P++V++ GSCA GG + SY+ + ++PVD+ +PGCPP +L+ Sbjct: 102 ALVRTYEATPGPKWVVAAGSCACDGGLFAQSYACAGAVENVIPVDLRIPGCPPAPLSLLK 161 Query: 169 GILLLQKK 176 G++ L ++ Sbjct: 162 GLIALLQR 169 >gi|257064036|ref|YP_003143708.1| ech hydrogenase subunit C [Slackia heliotrinireducens DSM 20476] gi|256791689|gb|ACV22359.1| ech hydrogenase subunit C [Slackia heliotrinireducens DSM 20476] Length = 146 Score = 162 bits (409), Expect = 3e-38, Method: Composition-based stats. Identities = 46/140 (32%), Positives = 80/140 (57%), Gaps = 7/140 (5%) Query: 52 TGSLMWMTF---GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108 + S + + C +E++ A P YD ERFG +P+ +D+ ++ G++ + Sbjct: 5 SKSPWVLHYDASSCNGCDIEVLAALSPVYDAERFGVINTGNPKHADIFVITGSVNERNID 64 Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168 ++ +Y+QM EP+ V++ GSCA GG +H Y+V+ G D +PVD+YVPGC E++I Sbjct: 65 VVKELYEQMVEPKVVVACGSCACSGGIFHDCYNVLGGVDNAIPVDVYVPGCAVRPESIID 124 Query: 169 GILL----LQKKIRRVGNVK 184 G++ L++K + N K Sbjct: 125 GVVEAIGILEEKAAALKNKK 144 >gi|182679430|ref|YP_001833576.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Beijerinckia indica subsp. indica ATCC 9039] gi|182635313|gb|ACB96087.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Beijerinckia indica subsp. indica ATCC 9039] Length = 177 Score = 162 bits (409), Expect = 3e-38, Method: Composition-based stats. Identities = 54/168 (32%), Positives = 88/168 (52%), Gaps = 10/168 (5%) Query: 11 ISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEM 69 ++ D + + +++E+ H + + R+ ++ + G C +E+ Sbjct: 9 LAKPPLTEAGPTDGEIAALAAELDH--LARSRL------GRSLAIREVDAGSCNGCELEI 60 Query: 70 MQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSC 129 YDLERFG ASPR +DV++V G +T+ M AL R YD P P++V++ G+C Sbjct: 61 NALGNAFYDLERFGLRFVASPRHADVLLVTGPVTHNMREALLRTYDATPNPKWVVAAGTC 120 Query: 130 ANGGGYYHYSYSV-VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKK 176 A G G + SY+ G ++ VD+Y+PGCPPT L+ G+L L K Sbjct: 121 ALGEGVFAESYACQKGGVSAVIAVDLYIPGCPPTPTDLLKGLLALITK 168 >gi|90426039|ref|YP_534409.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Rhodopseudomonas palustris BisB18] gi|90108053|gb|ABD90090.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Rhodopseudomonas palustris BisB18] Length = 246 Score = 162 bits (409), Expect = 3e-38, Method: Composition-based stats. Identities = 53/144 (36%), Positives = 80/144 (55%), Gaps = 5/144 (3%) Query: 46 LVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTN 104 L R+ + + G C +E+ A P +D ERFG ASPR +D+++ G +T Sbjct: 17 LSNIRRSAYVYRVDCGGCNGCEIEIFAAITPIFDAERFGIKVVASPRHADILLFTGAVTR 76 Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164 M R Y+ P+P+ V+S G+C GG +H Y V G D++VPVD+Y+PGCPPT Sbjct: 77 AMRMPALRAYEAAPDPKIVVSYGACGCTGGIFHDLYCVWGGTDQVVPVDVYIPGCPPTPP 136 Query: 165 ALIYGIL----LLQKKIRRVGNVK 184 A IYG LL +K++ +++ Sbjct: 137 ATIYGFAVALGLLDQKLKAKTHIE 160 >gi|157148257|ref|YP_001455576.1| hypothetical protein CKO_04074 [Citrobacter koseri ATCC BAA-895] gi|157085462|gb|ABV15140.1| hypothetical protein CKO_04074 [Citrobacter koseri ATCC BAA-895] Length = 255 Score = 162 bits (409), Expect = 3e-38, Method: Composition-based stats. Identities = 52/150 (34%), Positives = 76/150 (50%), Gaps = 5/150 (3%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPR 91 + L R+ + + G C +E+ P +D ERFG SPR Sbjct: 18 TVDESIASMKASLLKNIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPR 77 Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151 +D+++ G +T M S R + P+P+ IS G+C N GG +H Y V G D+IVP Sbjct: 78 HADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVP 137 Query: 152 VDIYVPGCPPTAEALIYGILL----LQKKI 177 VD+Y+PGCPPT A +YG + L++KI Sbjct: 138 VDVYIPGCPPTPAATLYGFAMALGLLEQKI 167 >gi|145298794|ref|YP_001141635.1| hydrogenase-4 component I [Aeromonas salmonicida subsp. salmonicida A449] gi|142851566|gb|ABO89887.1| hydrogenase-4 component I [Aeromonas salmonicida subsp. salmonicida A449] Length = 271 Score = 161 bits (408), Expect = 3e-38, Method: Composition-based stats. Identities = 53/150 (35%), Positives = 80/150 (53%), Gaps = 7/150 (4%) Query: 40 VTSVDQ--LVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVM 96 +T + + L R+ + + G C +E+ P +D ERFG ASPR +D++ Sbjct: 27 ITKLKKTLLKDIRRSAYVYRVDCGGCNACEIEIFATITPLFDAERFGIKVVASPRHADIL 86 Query: 97 IVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV 156 + G +T M R Y+ P+P+ I+ G+C GG +H Y V G D+IVPVD+Y+ Sbjct: 87 LFTGAVTRAMRVPALRAYEAAPDPKICIAYGACGCDGGIFHDLYCVWGGTDKIVPVDVYI 146 Query: 157 PGCPPTAEALIYGIL----LLQKKIRRVGN 182 PGCPPT A IYG LL++K+ + Sbjct: 147 PGCPPTPAATIYGFAVALGLLEQKLTATSH 176 >gi|218547773|ref|YP_002381564.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit [Escherichia fergusonii ATCC 35469] gi|218355314|emb|CAQ87921.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit [Escherichia fergusonii ATCC 35469] Length = 255 Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats. Identities = 54/154 (35%), Positives = 78/154 (50%), Gaps = 5/154 (3%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPR 91 + V L R+ + + G C +E+ P +D ERFG SPR Sbjct: 18 TVDESIASMKVSLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPR 77 Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151 +D+++ G +T M S R + P+P+ IS G+C N GG +H Y V G D+IVP Sbjct: 78 HADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVP 137 Query: 152 VDIYVPGCPPTAEALIYGILL----LQKKIRRVG 181 VD+Y+PGCPPT A +YG + L++KI G Sbjct: 138 VDVYIPGCPPTPAATLYGFAMALGLLEQKIHARG 171 >gi|198244148|ref|YP_002216819.1| formate hydrogenlyase subunit G [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|197938664|gb|ACH75997.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|326624578|gb|EGE30923.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 255 Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats. Identities = 52/150 (34%), Positives = 76/150 (50%), Gaps = 5/150 (3%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPR 91 + L R+ + + G C +E+ P +D ERFG SPR Sbjct: 18 TVDESIASMKASLLKNIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPR 77 Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151 +D+++ G +T M S R + P+P+ IS G+C N GG +H Y V G D+IVP Sbjct: 78 HADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVP 137 Query: 152 VDIYVPGCPPTAEALIYGILL----LQKKI 177 VD+Y+PGCPPT A +YG + L++KI Sbjct: 138 VDVYIPGCPPTPAATLYGFAMALGLLEQKI 167 >gi|89074820|ref|ZP_01161274.1| hydrogenase-4 component I [Photobacterium sp. SKA34] gi|89049395|gb|EAR54957.1| hydrogenase-4 component I [Photobacterium sp. SKA34] Length = 277 Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats. Identities = 56/141 (39%), Positives = 82/141 (58%), Gaps = 6/141 (4%) Query: 44 DQLVTWARTGSLMWMT--FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGT 101 D L+ R + ++ G C +E+ A+ P +D ERFG ASPR +D+++ G+ Sbjct: 29 DALIKEIRRSAYVYRIDCGGCNACEIEIFAATTPVFDTERFGIKIVASPRHADILLYTGS 88 Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP 161 +T M + R Y+ P+P+ VIS G+C GG +H Y V G D+IVPVD+Y+PGCPP Sbjct: 89 VTRAMRAPALRAYEAAPDPKIVISYGACGCDGGIFHDLYCVWGGTDKIVPVDVYIPGCPP 148 Query: 162 TAEALIYGIL----LLQKKIR 178 T A IYG LL +K++ Sbjct: 149 TPAATIYGFAVALGLLDQKLK 169 >gi|207858110|ref|YP_002244761.1| formate hydrogenlyase subunit 7 [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|206709913|emb|CAR34267.1| formate hydrogenlyase subunit 7 [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] Length = 255 Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats. Identities = 52/153 (33%), Positives = 77/153 (50%), Gaps = 5/153 (3%) Query: 30 SSEITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRA 88 + + L R+ + + G C +E+ P +D ERFG Sbjct: 15 APMTVDESIASMKASLLKNIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVP 74 Query: 89 SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 148 SPR +D+++ G +T M S R + P+P+ IS G+C N GG +H Y V G D+ Sbjct: 75 SPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDK 134 Query: 149 IVPVDIYVPGCPPTAEALIYGILL----LQKKI 177 IVPVD+Y+PGCPPT A +YG + L++KI Sbjct: 135 IVPVDVYIPGCPPTPAATLYGFAMALGLLEQKI 167 >gi|323212811|gb|EFZ97622.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] Length = 228 Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats. Identities = 52/137 (37%), Positives = 75/137 (54%), Gaps = 5/137 (3%) Query: 46 LVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTN 104 L R+ + + G C +E+ P +D ERFG SPR +D+++ G +T Sbjct: 4 LKNIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTR 63 Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164 M S R + P+P+ IS G+C N GG +H Y V G D+IVPVD+Y+PGCPPT Sbjct: 64 AMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPA 123 Query: 165 ALIYGILL----LQKKI 177 A +YG + L++KI Sbjct: 124 ATLYGFAMALGLLEQKI 140 >gi|271501147|ref|YP_003334172.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Dickeya dadantii Ech586] gi|270344702|gb|ACZ77467.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Dickeya dadantii Ech586] Length = 262 Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats. Identities = 54/137 (39%), Positives = 78/137 (56%), Gaps = 5/137 (3%) Query: 46 LVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTN 104 L R+ + + G C +E+ A P +D ERFG ASPR +D+++ G +T Sbjct: 30 LKDIKRSAYVYRVDCGGCNGCEIEIFSAITPLFDAERFGIKVVASPRHADILLFTGAVTR 89 Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164 M + R Y+ P+P+ IS G+C GGG +H Y V G D+IVP+D+Y+PGCPPT Sbjct: 90 AMRTPALRAYESAPDPKICISYGACGCGGGIFHDLYCVWGGSDKIVPIDVYIPGCPPTPA 149 Query: 165 ALIYGIL----LLQKKI 177 A IYG LL++K+ Sbjct: 150 ATIYGFAVALGLLEQKL 166 >gi|323180140|gb|EFZ65692.1| formate hydrogenlyase subunit 7 [Escherichia coli 1180] Length = 239 Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats. Identities = 53/154 (34%), Positives = 77/154 (50%), Gaps = 5/154 (3%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPR 91 + L R+ + + G C +E+ P +D ERFG SPR Sbjct: 2 TVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPR 61 Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151 +D+++ G +T M S R + P+P+ IS G+C N GG +H Y V G D+IVP Sbjct: 62 HADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVP 121 Query: 152 VDIYVPGCPPTAEALIYGILL----LQKKIRRVG 181 VD+Y+PGCPPT A +YG + L++KI G Sbjct: 122 VDVYIPGCPPTPAATLYGFAMALGLLEQKIHARG 155 >gi|283786731|ref|YP_003366596.1| formate hydrogenlyase subunit 7 [Citrobacter rodentium ICC168] gi|282950185|emb|CBG89821.1| formate hydrogenlyase subunit 7 [Citrobacter rodentium ICC168] Length = 255 Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats. Identities = 52/150 (34%), Positives = 76/150 (50%), Gaps = 5/150 (3%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPR 91 + L R+ + + G C +E+ P +D ERFG SPR Sbjct: 18 TVDESIASMKASLLKNIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPR 77 Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151 +D+++ G +T M S R + P+P+ IS G+C N GG +H Y V G D+IVP Sbjct: 78 HADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVP 137 Query: 152 VDIYVPGCPPTAEALIYGILL----LQKKI 177 VD+Y+PGCPPT A +YG + L++KI Sbjct: 138 VDVYIPGCPPTPAATLYGFAMALGLLEQKI 167 >gi|312973071|ref|ZP_07787244.1| formate hydrogenlyase subunit 7 [Escherichia coli 1827-70] gi|310333013|gb|EFQ00227.1| formate hydrogenlyase subunit 7 [Escherichia coli 1827-70] gi|315615107|gb|EFU95744.1| formate hydrogenlyase subunit 7 [Escherichia coli 3431] Length = 239 Score = 161 bits (407), Expect = 4e-38, Method: Composition-based stats. Identities = 53/154 (34%), Positives = 77/154 (50%), Gaps = 5/154 (3%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPR 91 + L R+ + + G C +E+ P +D ERFG SPR Sbjct: 2 TVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPR 61 Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151 +D+++ G +T M S R + P+P+ IS G+C N GG +H Y V G D+IVP Sbjct: 62 HADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVP 121 Query: 152 VDIYVPGCPPTAEALIYGILL----LQKKIRRVG 181 VD+Y+PGCPPT A +YG + L++KI G Sbjct: 122 VDVYIPGCPPTPAATLYGFAMALGLLEQKIHARG 155 >gi|168230908|ref|ZP_02655966.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|194445653|ref|YP_002042089.1| formate hydrogenlyase subunit G [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194472446|ref|ZP_03078430.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|197265511|ref|ZP_03165585.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|194404316|gb|ACF64538.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194458810|gb|EDX47649.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|197243766|gb|EDY26386.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|205334465|gb|EDZ21229.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] Length = 255 Score = 161 bits (407), Expect = 4e-38, Method: Composition-based stats. Identities = 52/150 (34%), Positives = 76/150 (50%), Gaps = 5/150 (3%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPR 91 + L R+ + + G C +E+ P +D ERFG SPR Sbjct: 18 TVDESIASMKASLLKNIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPR 77 Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151 +D+++ G +T M S R + P+P+ IS G+C N GG +H Y V G D+IVP Sbjct: 78 HADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVP 137 Query: 152 VDIYVPGCPPTAEALIYGILL----LQKKI 177 VD+Y+PGCPPT A +YG + L++KI Sbjct: 138 VDVYIPGCPPTPAATLYGFAMALGLLEQKI 167 >gi|204928419|ref|ZP_03219619.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|204322741|gb|EDZ07938.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] Length = 255 Score = 161 bits (407), Expect = 5e-38, Method: Composition-based stats. Identities = 52/150 (34%), Positives = 76/150 (50%), Gaps = 5/150 (3%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPR 91 + L R+ + + G C +E+ P +D ERFG SPR Sbjct: 18 TVDESIASMKASLLKNIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPR 77 Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151 +D+++ G +T M S R + P+P+ IS G+C N GG +H Y V G D+IVP Sbjct: 78 HADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVP 137 Query: 152 VDIYVPGCPPTAEALIYGILL----LQKKI 177 VD+Y+PGCPPT A +YG + L++KI Sbjct: 138 VDVYIPGCPPTPAATLYGFAMALGLLEQKI 167 >gi|16766153|ref|NP_461768.1| hydrogenase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|62181350|ref|YP_217767.1| hydrogenase activity [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161502108|ref|YP_001569220.1| hypothetical protein SARI_00125 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|161615750|ref|YP_001589715.1| hypothetical protein SPAB_03541 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167550313|ref|ZP_02344070.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|167994151|ref|ZP_02575243.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168235879|ref|ZP_02660937.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168242577|ref|ZP_02667509.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168262039|ref|ZP_02684012.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168464027|ref|ZP_02697944.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168820465|ref|ZP_02832465.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194448464|ref|YP_002046808.1| formate hydrogenlyase subunit G [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194734314|ref|YP_002115800.1| formate hydrogenlyase subunit G [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197248973|ref|YP_002147745.1| formate hydrogenlyase subunit G [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|200388880|ref|ZP_03215492.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|224584624|ref|YP_002638422.1| formate hydrogenlyase subunit 7 [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|238909614|ref|ZP_04653451.1| formate hydrogenlyase subunit 7 [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|16421393|gb|AAL21727.1| hydrogenase activity [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|62128983|gb|AAX66686.1| hydrogenase activity [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|160863455|gb|ABX20078.1| hypothetical protein SARI_00125 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] gi|161365114|gb|ABX68882.1| hypothetical protein SPAB_03541 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194406768|gb|ACF66987.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194709816|gb|ACF89037.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195633447|gb|EDX51861.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197212676|gb|ACH50073.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197290829|gb|EDY30183.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|199605978|gb|EDZ04523.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205324705|gb|EDZ12544.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205327917|gb|EDZ14681.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205337969|gb|EDZ24733.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205342888|gb|EDZ29652.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205348984|gb|EDZ35615.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|224469151|gb|ACN46981.1| formate hydrogenlyase subunit 7 [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|261247983|emb|CBG25816.1| formate hydrogenlyase subunit 7 [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267994970|gb|ACY89855.1| hydrogenase [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301159407|emb|CBW18925.1| formate hydrogenlyase subunit 7 [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312913865|dbj|BAJ37839.1| formate hydrogenlyase subunit G [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320087250|emb|CBY97015.1| NAD(P)H-quinone oxidoreductase subunit K, chloroplastic NAD(P)H dehydrogenase subunit K; NADH-plastoquinone oxidoreductase subunit K [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321223400|gb|EFX48466.1| Formate hydrogenlyase subunit 7 [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322614334|gb|EFY11265.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322621601|gb|EFY18454.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322624462|gb|EFY21295.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322628793|gb|EFY25576.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322633480|gb|EFY30222.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322635944|gb|EFY32652.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322639652|gb|EFY36337.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322646835|gb|EFY43338.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322650603|gb|EFY47008.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322654785|gb|EFY51104.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322659005|gb|EFY55258.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322664428|gb|EFY60622.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322668323|gb|EFY64480.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322673697|gb|EFY69798.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322677758|gb|EFY73821.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322681412|gb|EFY77444.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322683814|gb|EFY79824.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|322715833|gb|EFZ07404.1| hydrogenase [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323131198|gb|ADX18628.1| hydrogenase [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|323193797|gb|EFZ79000.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323200267|gb|EFZ85349.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323203230|gb|EFZ88259.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323205523|gb|EFZ90488.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323216337|gb|EGA01064.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323221085|gb|EGA05516.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323226906|gb|EGA11088.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323230810|gb|EGA14928.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323234839|gb|EGA18925.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323238878|gb|EGA22928.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323241578|gb|EGA25609.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323248275|gb|EGA32211.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323251141|gb|EGA35014.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323256024|gb|EGA39762.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323263159|gb|EGA46697.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323264336|gb|EGA47842.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323271163|gb|EGA54591.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|332989719|gb|AEF08702.1| hydrogenase [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 255 Score = 161 bits (407), Expect = 5e-38, Method: Composition-based stats. Identities = 52/150 (34%), Positives = 76/150 (50%), Gaps = 5/150 (3%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPR 91 + L R+ + + G C +E+ P +D ERFG SPR Sbjct: 18 TVDESIASMKASLLKNIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPR 77 Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151 +D+++ G +T M S R + P+P+ IS G+C N GG +H Y V G D+IVP Sbjct: 78 HADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVP 137 Query: 152 VDIYVPGCPPTAEALIYGILL----LQKKI 177 VD+Y+PGCPPT A +YG + L++KI Sbjct: 138 VDVYIPGCPPTPAATLYGFAMALGLLEQKI 167 >gi|74313286|ref|YP_311705.1| hydrogenase activity [Shigella sonnei Ss046] gi|73856763|gb|AAZ89470.1| hydrogenase activity [Shigella sonnei Ss046] gi|323167106|gb|EFZ52824.1| formate hydrogenlyase subunit 7 [Shigella sonnei 53G] Length = 255 Score = 161 bits (407), Expect = 5e-38, Method: Composition-based stats. Identities = 53/154 (34%), Positives = 77/154 (50%), Gaps = 5/154 (3%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPR 91 + L R+ + + G C +E+ P +D ERFG SPR Sbjct: 18 TVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPR 77 Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151 +D+++ G +T M S R + P+P+ IS G+C N GG +H Y V G D+IVP Sbjct: 78 HADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVP 137 Query: 152 VDIYVPGCPPTAEALIYGILL----LQKKIRRVG 181 VD+Y+PGCPPT A +YG + L++KI G Sbjct: 138 VDVYIPGCPPTPAATLYGFAMALGLLEQKIHARG 171 >gi|148264693|ref|YP_001231399.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Geobacter uraniireducens Rf4] gi|146398193|gb|ABQ26826.1| ech hydrogenase subunit C [Geobacter uraniireducens Rf4] Length = 147 Score = 161 bits (407), Expect = 5e-38, Method: Composition-based stats. Identities = 47/137 (34%), Positives = 79/137 (57%), Gaps = 8/137 (5%) Query: 47 VTWARTGSLMWMTF---GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLT 103 + W S + + C +E++ + P YDLERFG +P+ +D++ V G++ Sbjct: 1 MGWF-KRSPWVLHYNATSCNGCDIELIASLTPLYDLERFGIMSTGNPKHADILAVTGSVN 59 Query: 104 NKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTA 163 K L+ +YDQMP P+ ++++G CA G + Y+V+ G D+++PVD+YVPGC Sbjct: 60 EKSRQVLQNLYDQMPNPKVIVAVGICATSGCVFQDCYNVLGGVDKVLPVDVYVPGCAARP 119 Query: 164 EALIYGILL----LQKK 176 EA+I G+L L++K Sbjct: 120 EAIIDGVLKACDILEEK 136 >gi|299132789|ref|ZP_07025984.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Afipia sp. 1NLS2] gi|298592926|gb|EFI53126.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Afipia sp. 1NLS2] Length = 169 Score = 161 bits (407), Expect = 5e-38, Method: Composition-based stats. Identities = 53/125 (42%), Positives = 76/125 (60%), Gaps = 1/125 (0%) Query: 50 ARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108 R+ SL + G C +E+ S P YDLERFG ASPR +DV++V G +T M Sbjct: 42 GRSLSLRLVDAGSCNACELELNALSNPYYDLERFGLRFVASPRHADVLLVTGPVTKNMRE 101 Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168 L R YD MP P++V+++G CA GG Y SY+ RG + ++PV++ + GCPP+ L+ Sbjct: 102 PLLRTYDAMPAPKWVVAVGDCAACGGLYADSYACERGANAVLPVNLRIVGCPPSPTQLLE 161 Query: 169 GILLL 173 G+L L Sbjct: 162 GLLAL 166 >gi|320173428|gb|EFW48627.1| Formate hydrogenlyase subunit 7 [Shigella dysenteriae CDC 74-1112] Length = 255 Score = 161 bits (407), Expect = 5e-38, Method: Composition-based stats. Identities = 53/154 (34%), Positives = 77/154 (50%), Gaps = 5/154 (3%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPR 91 + L R+ + + G C +E+ P +D ERFG SPR Sbjct: 18 TVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPR 77 Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151 +D+++ G +T M S R + P+P+ IS G+C N GG +H Y V G D+IVP Sbjct: 78 HADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVP 137 Query: 152 VDIYVPGCPPTAEALIYGILL----LQKKIRRVG 181 VD+Y+PGCPPT A +YG + L++KI G Sbjct: 138 VDVYIPGCPPTPAATLYGFAMALGLLEQKIHARG 171 >gi|300820494|ref|ZP_07100645.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 119-7] gi|331669452|ref|ZP_08370298.1| formate hydrogenlyase subunit 7 (FHL subunit 7) (Hydrogenase-3component G) [Escherichia coli TA271] gi|331678693|ref|ZP_08379367.1| formate hydrogenlyase subunit 7 (FHL subunit 7) (Hydrogenase-3component G) [Escherichia coli H591] gi|300526758|gb|EFK47827.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 119-7] gi|331063120|gb|EGI35033.1| formate hydrogenlyase subunit 7 (FHL subunit 7) (Hydrogenase-3component G) [Escherichia coli TA271] gi|331073523|gb|EGI44844.1| formate hydrogenlyase subunit 7 (FHL subunit 7) (Hydrogenase-3component G) [Escherichia coli H591] Length = 255 Score = 161 bits (407), Expect = 5e-38, Method: Composition-based stats. Identities = 52/154 (33%), Positives = 77/154 (50%), Gaps = 5/154 (3%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPR 91 + L R+ + + G C +E+ P +D ERFG SPR Sbjct: 18 TVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPR 77 Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151 +D+++ G +T M S R + P+P+ IS G+C N GG +H Y V G D+I+P Sbjct: 78 HADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIIP 137 Query: 152 VDIYVPGCPPTAEALIYGILL----LQKKIRRVG 181 VD+Y+PGCPPT A +YG + L++KI G Sbjct: 138 VDVYIPGCPPTPAATLYGFAMALGLLEQKIHARG 171 >gi|56414799|ref|YP_151874.1| formate hydrogenlyase subunit 7 [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197363727|ref|YP_002143364.1| formate hydrogenlyase subunit 7 [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|56129056|gb|AAV78562.1| formate hydrogenlyase subunit 7 [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197095204|emb|CAR60755.1| formate hydrogenlyase subunit 7 [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 255 Score = 161 bits (407), Expect = 5e-38, Method: Composition-based stats. Identities = 52/150 (34%), Positives = 76/150 (50%), Gaps = 5/150 (3%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPR 91 + L R+ + + G C +E+ P +D ERFG SPR Sbjct: 18 TVDESIASMKASLLKNIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPR 77 Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151 +D+++ G +T M S R + P+P+ IS G+C N GG +H Y V G D+IVP Sbjct: 78 HADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVP 137 Query: 152 VDIYVPGCPPTAEALIYGILL----LQKKI 177 VD+Y+PGCPPT A +YG + L++KI Sbjct: 138 VDVYIPGCPPTPAATLYGFAMALGLLEQKI 167 >gi|124486434|ref|YP_001031050.1| ech hydrogenase subunit C [Methanocorpusculum labreanum Z] gi|124363975|gb|ABN07783.1| ech hydrogenase subunit C [Methanocorpusculum labreanum Z] Length = 144 Score = 161 bits (407), Expect = 5e-38, Method: Composition-based stats. Identities = 48/132 (36%), Positives = 77/132 (58%), Gaps = 7/132 (5%) Query: 52 TGSLMWMTF---GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108 + S + + C +E++ A P YD+ERFG +P +D+ +V G + + Sbjct: 5 SKSPWLLHYNASSCNGCDIEILAALTPVYDVERFGIINTGNPAHADIFVVTGGVNEQNKV 64 Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168 L+ +YDQ+PEP+ V+++G CA+ GG + Y++ G D I+PVD+YVPGC EALI Sbjct: 65 VLKNLYDQIPEPKVVVAVGICASSGGVFRDCYNISGGVDTIIPVDVYVPGCSVRPEALIE 124 Query: 169 GILL----LQKK 176 GI+ L++K Sbjct: 125 GIVKALGVLEEK 136 >gi|317054477|ref|YP_004118502.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Pantoea sp. At-9b] gi|316952472|gb|ADU71946.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Pantoea sp. At-9b] Length = 254 Score = 161 bits (407), Expect = 5e-38, Method: Composition-based stats. Identities = 53/149 (35%), Positives = 77/149 (51%), Gaps = 5/149 (3%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 + L R+ + + G C +E+ A P +D ERFG SPR Sbjct: 19 VEESIASLKASLLKKIKRSAYVYRVDCGGCNGCEIEIFAALTPLFDAERFGIKVVPSPRH 78 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 +D+++ G +T M S R + P+P+ IS G+C N GG +H Y V G D+IVPV Sbjct: 79 ADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPV 138 Query: 153 DIYVPGCPPTAEALIYGILL----LQKKI 177 D+Y+PGCPPT A +YG + L++KI Sbjct: 139 DVYIPGCPPTPAATLYGFAMALGLLEQKI 167 >gi|83591007|ref|YP_431016.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Moorella thermoacetica ATCC 39073] gi|83573921|gb|ABC20473.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Moorella thermoacetica ATCC 39073] Length = 252 Score = 161 bits (407), Expect = 5e-38, Method: Composition-based stats. Identities = 53/145 (36%), Positives = 78/145 (53%), Gaps = 7/145 (4%) Query: 39 LVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97 L + ++ R+ + + G C +E+ P YD ER GF ASPR +D+++ Sbjct: 10 LKAKLKNVIK--RSVYVYRVDCGGCNGCEIEIFATISPVYDPERLGFKVVASPRHADILL 67 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 G +T M R Y P+P+ V++ G+C GG +H YSV G I PVD+Y+P Sbjct: 68 FTGPMTRAMRLPAIRAYQAAPDPKIVVAYGTCGCSGGIFHDCYSVWGGTGSIFPVDVYIP 127 Query: 158 GCPPTAEALIYG----ILLLQKKIR 178 GCPPT A IYG + LLQ+K++ Sbjct: 128 GCPPTPGATIYGLGLALDLLQQKMK 152 >gi|283835553|ref|ZP_06355294.1| hydrogenase-4 component I [Citrobacter youngae ATCC 29220] gi|291068763|gb|EFE06872.1| hydrogenase-4 component I [Citrobacter youngae ATCC 29220] Length = 255 Score = 160 bits (406), Expect = 6e-38, Method: Composition-based stats. Identities = 52/150 (34%), Positives = 76/150 (50%), Gaps = 5/150 (3%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPR 91 + L R+ + + G C +E+ P +D ERFG SPR Sbjct: 18 TVDESIASMKASLLKNIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPR 77 Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151 +D+++ G +T M S R + P+P+ IS G+C N GG +H Y V G D+IVP Sbjct: 78 HADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVP 137 Query: 152 VDIYVPGCPPTAEALIYGILL----LQKKI 177 VD+Y+PGCPPT A +YG + L++KI Sbjct: 138 VDVYIPGCPPTPAATLYGFAMALGLLEQKI 167 >gi|317493922|ref|ZP_07952339.1| NADH ubiquinone oxidoreductase [Enterobacteriaceae bacterium 9_2_54FAA] gi|316918249|gb|EFV39591.1| NADH ubiquinone oxidoreductase [Enterobacteriaceae bacterium 9_2_54FAA] Length = 274 Score = 160 bits (406), Expect = 6e-38, Method: Composition-based stats. Identities = 57/170 (33%), Positives = 87/170 (51%), Gaps = 6/170 (3%) Query: 14 QSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQA 72 +S + DA+ + + + + S L R+ + + G C +E+ A Sbjct: 11 NNSPIIGPRDANGLPVPITVDEQIAKLKST-LLKDIRRSAYVYRVDCGGCNGCEIEIFSA 69 Query: 73 SMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANG 132 P +D ERFG SPR +D+++ G +T M R Y+ P+P+ VIS G+C Sbjct: 70 LTPLFDTERFGIKVVPSPRHADILLFTGAVTRSMRIPAIRAYESAPDPKIVISYGACGCS 129 Query: 133 GGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILL----LQKKIR 178 GG +H Y V G D+IVPVD+Y+PGCPPT A IYG + L +K++ Sbjct: 130 GGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATIYGFAMALGLLDQKLK 179 >gi|57234359|ref|YP_181588.1| hydrogenase, group 4, EchC subunit, putative [Dehalococcoides ethenogenes 195] gi|57224807|gb|AAW39864.1| hydrogenase, group 4, EchC subunit, putative [Dehalococcoides ethenogenes 195] Length = 155 Score = 160 bits (406), Expect = 6e-38, Method: Composition-based stats. Identities = 46/131 (35%), Positives = 76/131 (58%), Gaps = 3/131 (2%) Query: 45 QLVTWARTGSLMWMTF---GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGT 101 VT ++ S + F C +E++ P YD+ERFG +P+ SDV++V G Sbjct: 2 DFVTKSQIKSPWLLHFDCGSCNGCDIEILACLTPLYDVERFGIVNMGNPKHSDVLLVTGP 61 Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP 161 + L+ +Y QMP+P+ VI +G+C GG +H +++ G D+++PVD+YVPGC Sbjct: 62 ANKRNYRVLQNLYQQMPDPKVVIVIGTCGCSGGVFHNCPNILGGVDKVIPVDVYVPGCAA 121 Query: 162 TAEALIYGILL 172 EA+I G+++ Sbjct: 122 RPEAIIDGVVM 132 >gi|218548077|ref|YP_002381868.1| hydrogenase 4, Fe-S subunit [Escherichia fergusonii ATCC 35469] gi|218355618|emb|CAQ88229.1| hydrogenase 4, Fe-S subunit [Escherichia fergusonii ATCC 35469] Length = 268 Score = 160 bits (406), Expect = 7e-38, Method: Composition-based stats. Identities = 53/144 (36%), Positives = 77/144 (53%), Gaps = 5/144 (3%) Query: 46 LVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTN 104 L R+ + + G C +E+ A P +D ERFG +SPR +D+++ G +T Sbjct: 43 LKDIRRSAYVYRVDCGGCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTR 102 Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164 M R Y+ P+ + +S G+C GGG +H Y V G D IVPVD+++PGCPPT Sbjct: 103 AMRMPALRAYESAPDHKICVSYGACGVGGGIFHDLYCVWGGSDTIVPVDVWIPGCPPTPA 162 Query: 165 ALIYGIL----LLQKKIRRVGNVK 184 A I+G LLQ+KI V+ Sbjct: 163 ATIHGFAVALGLLQQKIHAEDYVE 186 >gi|322831876|ref|YP_004211903.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Rahnella sp. Y9602] gi|321167077|gb|ADW72776.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Rahnella sp. Y9602] Length = 265 Score = 160 bits (406), Expect = 7e-38, Method: Composition-based stats. Identities = 52/123 (42%), Positives = 71/123 (57%), Gaps = 4/123 (3%) Query: 60 FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119 G C +E+ A P +D ERFG SPR +D+++ G +T M R +D P+ Sbjct: 47 GGCNGCEIEIFAAISPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRIPALRAWDSAPD 106 Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILL----LQK 175 P+ IS G+C N GG +H Y V G D+IVPVD+Y+PGCPPT A IYG + L + Sbjct: 107 PKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATIYGFAMALGLLDQ 166 Query: 176 KIR 178 KI+ Sbjct: 167 KIK 169 >gi|307312858|ref|ZP_07592488.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Escherichia coli W] gi|306907293|gb|EFN37799.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Escherichia coli W] gi|315061995|gb|ADT76322.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit [Escherichia coli W] gi|323377422|gb|ADX49690.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Escherichia coli KO11] Length = 255 Score = 160 bits (406), Expect = 7e-38, Method: Composition-based stats. Identities = 53/154 (34%), Positives = 77/154 (50%), Gaps = 5/154 (3%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPR 91 + L R+ + + G C +E+ P +D ERFG SPR Sbjct: 18 TVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPR 77 Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151 +D+++ G +T M S R + P+P+ IS G+C N GG +H Y V G D+IVP Sbjct: 78 HADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVP 137 Query: 152 VDIYVPGCPPTAEALIYGILL----LQKKIRRVG 181 VD+Y+PGCPPT A +YG + L++KI G Sbjct: 138 VDVYIPGCPPTPAATLYGFAMALGLLEQKIHARG 171 >gi|26249118|ref|NP_755158.1| formate hydrogenlyase subunit 7 [Escherichia coli CFT073] gi|91212079|ref|YP_542065.1| formate hydrogenlyase subunit 7 [Escherichia coli UTI89] gi|110642842|ref|YP_670572.1| formate hydrogenlyase-3 component G [Escherichia coli 536] gi|117624951|ref|YP_853939.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit [Escherichia coli APEC O1] gi|157157238|ref|YP_001464031.1| formate hydrogenlyase, subunit G [Escherichia coli E24377A] gi|170683663|ref|YP_001744868.1| formate hydrogenlyase, subunit G [Escherichia coli SMS-3-5] gi|191166819|ref|ZP_03028645.1| formate hydrogenlyase, subunit G [Escherichia coli B7A] gi|191171381|ref|ZP_03032930.1| formate hydrogenlyase, subunit G [Escherichia coli F11] gi|193065043|ref|ZP_03046118.1| formate hydrogenlyase, subunit G [Escherichia coli E22] gi|193069668|ref|ZP_03050620.1| formate hydrogenlyase, subunit G [Escherichia coli E110019] gi|194427855|ref|ZP_03060401.1| formate hydrogenlyase, subunit G [Escherichia coli B171] gi|209920158|ref|YP_002294242.1| formate hydrogenlyase subunit [Escherichia coli SE11] gi|218555263|ref|YP_002388176.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit [Escherichia coli IAI1] gi|218559709|ref|YP_002392622.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit [Escherichia coli S88] gi|218690843|ref|YP_002399055.1| hydrogenase 3 and formate hydrogenase complex subunit HycG [Escherichia coli ED1a] gi|218701211|ref|YP_002408840.1| hydrogenase 3 and formate hydrogenase complex subunit HycG [Escherichia coli IAI39] gi|218706213|ref|YP_002413732.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit [Escherichia coli UMN026] gi|227888257|ref|ZP_04006062.1| hydrogenase activity [Escherichia coli 83972] gi|237706658|ref|ZP_04537139.1| formate hydrogenlyase subunit 7 [Escherichia sp. 3_2_53FAA] gi|256019502|ref|ZP_05433367.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit [Shigella sp. D9] gi|260845362|ref|YP_003223140.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit [Escherichia coli O103:H2 str. 12009] gi|293406211|ref|ZP_06650137.1| formate hydrogenlyase subunit 7 [Escherichia coli FVEC1412] gi|293412077|ref|ZP_06654800.1| conserved hypothetical protein [Escherichia coli B354] gi|293449035|ref|ZP_06663456.1| hycG [Escherichia coli B088] gi|298381948|ref|ZP_06991545.1| formate hydrogenlyase subunit 7 [Escherichia coli FVEC1302] gi|300815877|ref|ZP_07096101.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 107-1] gi|300899958|ref|ZP_07118161.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 198-1] gi|300906778|ref|ZP_07124460.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 84-1] gi|300922237|ref|ZP_07138363.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 182-1] gi|300975045|ref|ZP_07172846.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 200-1] gi|300976821|ref|ZP_07173638.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 45-1] gi|301027129|ref|ZP_07190498.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 69-1] gi|301049524|ref|ZP_07196482.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 185-1] gi|301305390|ref|ZP_07211484.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 124-1] gi|301326246|ref|ZP_07219629.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 78-1] gi|306812403|ref|ZP_07446601.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit [Escherichia coli NC101] gi|309795179|ref|ZP_07689598.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 145-7] gi|331658827|ref|ZP_08359769.1| formate hydrogenlyase subunit 7 (FHL subunit 7) (Hydrogenase-3component G) [Escherichia coli TA206] gi|331684332|ref|ZP_08384924.1| formate hydrogenlyase subunit 7 (FHL subunit 7) (Hydrogenase-3component G) [Escherichia coli H299] gi|332280624|ref|ZP_08393037.1| hydrogenase 3 and formate hydrogenase complex [Shigella sp. D9] gi|26109525|gb|AAN81728.1|AE016765_130 Formate hydrogenlyase subunit 7 [Escherichia coli CFT073] gi|91073653|gb|ABE08534.1| formate hydrogenlyase subunit 7 [Escherichia coli UTI89] gi|110344434|gb|ABG70671.1| formate hydrogenlyase-3 component G [Escherichia coli 536] gi|115514075|gb|ABJ02150.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit [Escherichia coli APEC O1] gi|157079268|gb|ABV18976.1| formate hydrogenlyase, subunit G [Escherichia coli E24377A] gi|170521381|gb|ACB19559.1| formate hydrogenlyase, subunit G [Escherichia coli SMS-3-5] gi|190903190|gb|EDV62913.1| formate hydrogenlyase, subunit G [Escherichia coli B7A] gi|190908315|gb|EDV67905.1| formate hydrogenlyase, subunit G [Escherichia coli F11] gi|192927340|gb|EDV81959.1| formate hydrogenlyase, subunit G [Escherichia coli E22] gi|192957031|gb|EDV87482.1| formate hydrogenlyase, subunit G [Escherichia coli E110019] gi|194414088|gb|EDX30364.1| formate hydrogenlyase, subunit G [Escherichia coli B171] gi|209913417|dbj|BAG78491.1| formate hydrogenlyase subunit [Escherichia coli SE11] gi|218362031|emb|CAQ99638.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit [Escherichia coli IAI1] gi|218366478|emb|CAR04230.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit [Escherichia coli S88] gi|218371197|emb|CAR19028.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit [Escherichia coli IAI39] gi|218428407|emb|CAR09332.2| hydrogenase 3 and formate hydrogenase complex, HycG subunit [Escherichia coli ED1a] gi|218433310|emb|CAR14210.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit [Escherichia coli UMN026] gi|222034413|emb|CAP77155.1| Formate hydrogenlyase subunit 7 [Escherichia coli LF82] gi|226899698|gb|EEH85957.1| formate hydrogenlyase subunit 7 [Escherichia sp. 3_2_53FAA] gi|227834526|gb|EEJ44992.1| hydrogenase activity [Escherichia coli 83972] gi|257760509|dbj|BAI32006.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit [Escherichia coli O103:H2 str. 12009] gi|284922655|emb|CBG35743.1| formate hydrogenlyase subunit 7 [Escherichia coli 042] gi|291322125|gb|EFE61554.1| hycG [Escherichia coli B088] gi|291426217|gb|EFE99249.1| formate hydrogenlyase subunit 7 [Escherichia coli FVEC1412] gi|291468848|gb|EFF11339.1| conserved hypothetical protein [Escherichia coli B354] gi|294489961|gb|ADE88717.1| formate hydrogenlyase, subunit G [Escherichia coli IHE3034] gi|298277088|gb|EFI18604.1| formate hydrogenlyase subunit 7 [Escherichia coli FVEC1302] gi|300298755|gb|EFJ55140.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 185-1] gi|300308813|gb|EFJ63333.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 200-1] gi|300356467|gb|EFJ72337.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 198-1] gi|300395161|gb|EFJ78699.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 69-1] gi|300401472|gb|EFJ85010.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 84-1] gi|300410007|gb|EFJ93545.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 45-1] gi|300421367|gb|EFK04678.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 182-1] gi|300531806|gb|EFK52868.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 107-1] gi|300839310|gb|EFK67070.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 124-1] gi|300847091|gb|EFK74851.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 78-1] gi|305854441|gb|EFM54879.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit [Escherichia coli NC101] gi|307554694|gb|ADN47469.1| formate hydrogenlyase subunit 7 [Escherichia coli ABU 83972] gi|307625710|gb|ADN70014.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit [Escherichia coli UM146] gi|308121150|gb|EFO58412.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 145-7] gi|312947248|gb|ADR28075.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit [Escherichia coli O83:H1 str. NRG 857C] gi|315254501|gb|EFU34469.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 85-1] gi|315289284|gb|EFU48679.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 110-3] gi|315293724|gb|EFU53076.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 153-1] gi|315298793|gb|EFU58047.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 16-3] gi|320194857|gb|EFW69486.1| Formate hydrogenlyase subunit 7 [Escherichia coli WV_060327] gi|320202369|gb|EFW76939.1| Formate hydrogenlyase subunit 7 [Escherichia coli EC4100B] gi|323159853|gb|EFZ45824.1| formate hydrogenlyase subunit 7 [Escherichia coli E128010] gi|323183246|gb|EFZ68643.1| formate hydrogenlyase subunit 7 [Escherichia coli 1357] gi|323188867|gb|EFZ74152.1| formate hydrogenlyase subunit 7 [Escherichia coli RN587/1] gi|323946400|gb|EGB42428.1| NADH ubiquinone oxidoreductase [Escherichia coli H120] gi|323951062|gb|EGB46938.1| NADH ubiquinone oxidoreductase [Escherichia coli H252] gi|323957069|gb|EGB52794.1| NADH ubiquinone oxidoreductase [Escherichia coli H263] gi|324005681|gb|EGB74900.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 57-2] gi|324013674|gb|EGB82893.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 60-1] gi|324017032|gb|EGB86251.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 117-3] gi|324119969|gb|EGC13847.1| NADH ubiquinone oxidoreductase [Escherichia coli E1167] gi|331053409|gb|EGI25438.1| formate hydrogenlyase subunit 7 (FHL subunit 7) (Hydrogenase-3component G) [Escherichia coli TA206] gi|331077947|gb|EGI49153.1| formate hydrogenlyase subunit 7 (FHL subunit 7) (Hydrogenase-3component G) [Escherichia coli H299] gi|332102976|gb|EGJ06322.1| hydrogenase 3 and formate hydrogenase complex [Shigella sp. D9] Length = 255 Score = 160 bits (406), Expect = 7e-38, Method: Composition-based stats. Identities = 53/154 (34%), Positives = 77/154 (50%), Gaps = 5/154 (3%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPR 91 + L R+ + + G C +E+ P +D ERFG SPR Sbjct: 18 TVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPR 77 Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151 +D+++ G +T M S R + P+P+ IS G+C N GG +H Y V G D+IVP Sbjct: 78 HADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVP 137 Query: 152 VDIYVPGCPPTAEALIYGILL----LQKKIRRVG 181 VD+Y+PGCPPT A +YG + L++KI G Sbjct: 138 VDVYIPGCPPTPAATLYGFAMALGLLEQKIHARG 171 >gi|154149575|ref|YP_001403193.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Candidatus Methanoregula boonei 6A8] gi|153998127|gb|ABS54550.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Methanoregula boonei 6A8] Length = 163 Score = 160 bits (406), Expect = 7e-38, Method: Composition-based stats. Identities = 44/123 (35%), Positives = 72/123 (58%), Gaps = 3/123 (2%) Query: 53 GSLMWMTF---GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASA 109 S + + C +E++ P YD+ERFG +P+ +D+ +V G++ + Sbjct: 6 KSPWIIHYDASSCNGCDIEILACLTPMYDVERFGIINTGNPKHADIFVVTGSVNEQNKYV 65 Query: 110 LRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYG 169 +R +YDQMP+P+ V+++G CA GG + Y+V G D I+PVD+YVPGC E++I G Sbjct: 66 IRNIYDQMPDPKVVVAIGICATSGGIFRECYNVAGGIDTIIPVDVYVPGCAARPESIIDG 125 Query: 170 ILL 172 I+ Sbjct: 126 IVK 128 >gi|194432976|ref|ZP_03065259.1| formate hydrogenlyase, subunit G [Shigella dysenteriae 1012] gi|300941095|ref|ZP_07155607.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 21-1] gi|194418703|gb|EDX34789.1| formate hydrogenlyase, subunit G [Shigella dysenteriae 1012] gi|300454138|gb|EFK17631.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 21-1] gi|323966866|gb|EGB62295.1| NADH ubiquinone oxidoreductase [Escherichia coli M863] gi|323978671|gb|EGB73753.1| NADH ubiquinone oxidoreductase [Escherichia coli TW10509] gi|324111344|gb|EGC05326.1| NADH ubiquinone oxidoreductase [Escherichia fergusonii B253] gi|325496240|gb|EGC94099.1| formate hydrogenlyase, subunit G [Escherichia fergusonii ECD227] gi|327251442|gb|EGE63128.1| formate hydrogenlyase subunit 7 [Escherichia coli STEC_7v] gi|332087440|gb|EGI92568.1| formate hydrogenlyase subunit 7 [Shigella boydii 5216-82] gi|332088649|gb|EGI93762.1| formate hydrogenlyase subunit 7 [Shigella dysenteriae 155-74] Length = 255 Score = 160 bits (406), Expect = 7e-38, Method: Composition-based stats. Identities = 53/154 (34%), Positives = 77/154 (50%), Gaps = 5/154 (3%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPR 91 + L R+ + + G C +E+ P +D ERFG SPR Sbjct: 18 TVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPR 77 Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151 +D+++ G +T M S R + P+P+ IS G+C N GG +H Y V G D+IVP Sbjct: 78 HADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVP 137 Query: 152 VDIYVPGCPPTAEALIYGILL----LQKKIRRVG 181 VD+Y+PGCPPT A +YG + L++KI G Sbjct: 138 VDVYIPGCPPTPAATLYGFAMALGLLEQKIHARG 171 >gi|15803236|ref|NP_289268.1| hydrogenase activity [Escherichia coli O157:H7 EDL933] gi|15832829|ref|NP_311602.1| formate hydrogenlyase subunit-7 component G [Escherichia coli O157:H7 str. Sakai] gi|168749956|ref|ZP_02774978.1| formate hydrogenlyase, subunit G [Escherichia coli O157:H7 str. EC4113] gi|168755464|ref|ZP_02780471.1| formate hydrogenlyase, subunit G [Escherichia coli O157:H7 str. EC4401] gi|168762882|ref|ZP_02787889.1| formate hydrogenlyase, subunit G [Escherichia coli O157:H7 str. EC4501] gi|168768810|ref|ZP_02793817.1| formate hydrogenlyase, subunit G [Escherichia coli O157:H7 str. EC4486] gi|168774749|ref|ZP_02799756.1| formate hydrogenlyase, subunit G [Escherichia coli O157:H7 str. EC4196] gi|168778701|ref|ZP_02803708.1| formate hydrogenlyase, subunit G [Escherichia coli O157:H7 str. EC4076] gi|168787974|ref|ZP_02812981.1| formate hydrogenlyase, subunit G [Escherichia coli O157:H7 str. EC869] gi|168800200|ref|ZP_02825207.1| formate hydrogenlyase, subunit G [Escherichia coli O157:H7 str. EC508] gi|194438988|ref|ZP_03071072.1| formate hydrogenlyase, subunit G [Escherichia coli 101-1] gi|195938469|ref|ZP_03083851.1| formate hydrogenlyase subunit-7 component G [Escherichia coli O157:H7 str. EC4024] gi|208806906|ref|ZP_03249243.1| formate hydrogenlyase, subunit G [Escherichia coli O157:H7 str. EC4206] gi|208812606|ref|ZP_03253935.1| formate hydrogenlyase, subunit G [Escherichia coli O157:H7 str. EC4045] gi|208818509|ref|ZP_03258829.1| formate hydrogenlyase, subunit G [Escherichia coli O157:H7 str. EC4042] gi|209396735|ref|YP_002272182.1| formate hydrogenlyase, subunit G [Escherichia coli O157:H7 str. EC4115] gi|217327730|ref|ZP_03443813.1| formate hydrogenlyase, subunit G [Escherichia coli O157:H7 str. TW14588] gi|253772426|ref|YP_003035257.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254162650|ref|YP_003045758.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit [Escherichia coli B str. REL606] gi|254794659|ref|YP_003079496.1| hydrogenase 3 and formate hydrogenase complex subunit HycG [Escherichia coli O157:H7 str. TW14359] gi|260856826|ref|YP_003230717.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit [Escherichia coli O26:H11 str. 11368] gi|260869394|ref|YP_003235796.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit [Escherichia coli O111:H- str. 11128] gi|261226013|ref|ZP_05940294.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit [Escherichia coli O157:H7 str. FRIK2000] gi|261256729|ref|ZP_05949262.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit [Escherichia coli O157:H7 str. FRIK966] gi|291284046|ref|YP_003500864.1| Formate hydrogenlyase, subunit G [Escherichia coli O55:H7 str. CB9615] gi|293415969|ref|ZP_06658609.1| formate hydrogenlyase subunit 7 [Escherichia coli B185] gi|297519859|ref|ZP_06938245.1| Formate hydrogenlyase, subunit G [Escherichia coli OP50] gi|300919245|ref|ZP_07135768.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 115-1] gi|300930577|ref|ZP_07145969.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 187-1] gi|331654196|ref|ZP_08355196.1| formate hydrogenlyase subunit 7 (FHL subunit 7) (Hydrogenase-3component G) [Escherichia coli M718] gi|331674227|ref|ZP_08374987.1| formate hydrogenlyase subunit 7 (FHL subunit 7) (Hydrogenase-3component G) [Escherichia coli TA280] gi|12517167|gb|AAG57826.1|AE005500_5 hydrogenase activity [Escherichia coli O157:H7 str. EDL933] gi|13363046|dbj|BAB36998.1| formate hydrogenlyase subunit-7 component G [Escherichia coli O157:H7 str. Sakai] gi|187769518|gb|EDU33362.1| formate hydrogenlyase, subunit G [Escherichia coli O157:H7 str. EC4196] gi|188015810|gb|EDU53932.1| formate hydrogenlyase, subunit G [Escherichia coli O157:H7 str. EC4113] gi|189003614|gb|EDU72600.1| formate hydrogenlyase, subunit G [Escherichia coli O157:H7 str. EC4076] gi|189357334|gb|EDU75753.1| formate hydrogenlyase, subunit G [Escherichia coli O157:H7 str. EC4401] gi|189362033|gb|EDU80452.1| formate hydrogenlyase, subunit G [Escherichia coli O157:H7 str. EC4486] gi|189366866|gb|EDU85282.1| formate hydrogenlyase, subunit G [Escherichia coli O157:H7 str. EC4501] gi|189372104|gb|EDU90520.1| formate hydrogenlyase, subunit G [Escherichia coli O157:H7 str. EC869] gi|189377479|gb|EDU95895.1| formate hydrogenlyase, subunit G [Escherichia coli O157:H7 str. EC508] gi|194422109|gb|EDX38112.1| formate hydrogenlyase, subunit G [Escherichia coli 101-1] gi|208726707|gb|EDZ76308.1| formate hydrogenlyase, subunit G [Escherichia coli O157:H7 str. EC4206] gi|208733883|gb|EDZ82570.1| formate hydrogenlyase, subunit G [Escherichia coli O157:H7 str. EC4045] gi|208738632|gb|EDZ86314.1| formate hydrogenlyase, subunit G [Escherichia coli O157:H7 str. EC4042] gi|209158135|gb|ACI35568.1| formate hydrogenlyase, subunit G [Escherichia coli O157:H7 str. EC4115] gi|209761908|gb|ACI79266.1| formate hydrogenlyase subunit-7 component G [Escherichia coli] gi|209761910|gb|ACI79267.1| formate hydrogenlyase subunit-7 component G [Escherichia coli] gi|209761912|gb|ACI79268.1| formate hydrogenlyase subunit-7 component G [Escherichia coli] gi|209761914|gb|ACI79269.1| formate hydrogenlyase subunit-7 component G [Escherichia coli] gi|209761916|gb|ACI79270.1| formate hydrogenlyase subunit-7 component G [Escherichia coli] gi|217320097|gb|EEC28522.1| formate hydrogenlyase, subunit G [Escherichia coli O157:H7 str. TW14588] gi|242378276|emb|CAQ33051.1| hydrogenase 3 and formate hydrogenlyase complex, HycG subunit, subunit of hydrogenase 3 and formate hydrogenlyase complex [Escherichia coli BL21(DE3)] gi|253323470|gb|ACT28072.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253974551|gb|ACT40222.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit [Escherichia coli B str. REL606] gi|253978718|gb|ACT44388.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit [Escherichia coli BL21(DE3)] gi|254594059|gb|ACT73420.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit [Escherichia coli O157:H7 str. TW14359] gi|257755475|dbj|BAI26977.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit [Escherichia coli O26:H11 str. 11368] gi|257765750|dbj|BAI37245.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit [Escherichia coli O111:H- str. 11128] gi|290763919|gb|ADD57880.1| Formate hydrogenlyase, subunit G [Escherichia coli O55:H7 str. CB9615] gi|291432158|gb|EFF05140.1| formate hydrogenlyase subunit 7 [Escherichia coli B185] gi|300413690|gb|EFJ97000.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 115-1] gi|300461519|gb|EFK25012.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 187-1] gi|320189051|gb|EFW63710.1| Formate hydrogenlyase subunit 7 [Escherichia coli O157:H7 str. EC1212] gi|320640362|gb|EFX09901.1| Formate hydrogenlyase, subunit G [Escherichia coli O157:H7 str. G5101] gi|320645909|gb|EFX14890.1| Formate hydrogenlyase, subunit G [Escherichia coli O157:H- str. 493-89] gi|320651209|gb|EFX19644.1| Formate hydrogenlyase, subunit G [Escherichia coli O157:H- str. H 2687] gi|320656759|gb|EFX24647.1| Formate hydrogenlyase, subunit G [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320662302|gb|EFX29699.1| Formate hydrogenlyase, subunit G [Escherichia coli O55:H7 str. USDA 5905] gi|320667353|gb|EFX34311.1| Formate hydrogenlyase, subunit G [Escherichia coli O157:H7 str. LSU-61] gi|323154935|gb|EFZ41127.1| formate hydrogenlyase subunit 7 [Escherichia coli EPECa14] gi|323941450|gb|EGB37633.1| NADH ubiquinone oxidoreductase [Escherichia coli E482] gi|323960621|gb|EGB56247.1| NADH ubiquinone oxidoreductase [Escherichia coli H489] gi|323971552|gb|EGB66785.1| NADH ubiquinone oxidoreductase [Escherichia coli TA007] gi|326339209|gb|EGD63024.1| Formate hydrogenlyase subunit 7 [Escherichia coli O157:H7 str. 1044] gi|326342908|gb|EGD66676.1| Formate hydrogenlyase subunit 7 [Escherichia coli O157:H7 str. 1125] gi|331047578|gb|EGI19655.1| formate hydrogenlyase subunit 7 (FHL subunit 7) (Hydrogenase-3component G) [Escherichia coli M718] gi|331068321|gb|EGI39716.1| formate hydrogenlyase subunit 7 (FHL subunit 7) (Hydrogenase-3component G) [Escherichia coli TA280] Length = 255 Score = 160 bits (406), Expect = 7e-38, Method: Composition-based stats. Identities = 53/154 (34%), Positives = 77/154 (50%), Gaps = 5/154 (3%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPR 91 + L R+ + + G C +E+ P +D ERFG SPR Sbjct: 18 TVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPR 77 Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151 +D+++ G +T M S R + P+P+ IS G+C N GG +H Y V G D+IVP Sbjct: 78 HADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVP 137 Query: 152 VDIYVPGCPPTAEALIYGILL----LQKKIRRVG 181 VD+Y+PGCPPT A +YG + L++KI G Sbjct: 138 VDVYIPGCPPTPAATLYGFAMALGLLEQKIHARG 171 >gi|324112980|gb|EGC06956.1| NADH ubiquinone oxidoreductase [Escherichia fergusonii B253] gi|325496480|gb|EGC94339.1| hydrogenase 4, Fe-S subunit [Escherichia fergusonii ECD227] Length = 255 Score = 160 bits (406), Expect = 7e-38, Method: Composition-based stats. Identities = 53/144 (36%), Positives = 77/144 (53%), Gaps = 5/144 (3%) Query: 46 LVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTN 104 L R+ + + G C +E+ A P +D ERFG +SPR +D+++ G +T Sbjct: 30 LKDIRRSAYVYRVDCGGCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTR 89 Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164 M R Y+ P+ + +S G+C GGG +H Y V G D IVPVD+++PGCPPT Sbjct: 90 AMRMPALRAYESAPDHKICVSYGACGVGGGIFHDLYCVWGGSDTIVPVDVWIPGCPPTPA 149 Query: 165 ALIYGIL----LLQKKIRRVGNVK 184 A I+G LLQ+KI V+ Sbjct: 150 ATIHGFAVALGLLQQKIHAEDYVE 173 >gi|307130311|ref|YP_003882327.1| hydrogenase 4, Fe-S subunit [Dickeya dadantii 3937] gi|306527840|gb|ADM97770.1| hydrogenase 4, Fe-S subunit [Dickeya dadantii 3937] Length = 263 Score = 160 bits (406), Expect = 7e-38, Method: Composition-based stats. Identities = 55/137 (40%), Positives = 78/137 (56%), Gaps = 5/137 (3%) Query: 46 LVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTN 104 L R+ + + G C +E+ A P +D ERFG ASPR +D+++ G +T Sbjct: 30 LKDIQRSAYVYRVDCGGCNGCEIEIFSAITPLFDAERFGIKVVASPRHADILLFTGAVTR 89 Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164 M S R Y+ P+P+ IS G+C GGG +H Y V G D+IVP+D+Y+PGCPPT Sbjct: 90 AMRSPALRAYESAPDPKICISYGACGCGGGIFHDLYCVWGGSDKIVPIDVYIPGCPPTPA 149 Query: 165 ALIYGIL----LLQKKI 177 A IYG LL++K+ Sbjct: 150 ATIYGFAVALGLLEQKL 166 >gi|289433303|ref|YP_003463176.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Dehalococcoides sp. GT] gi|288947023|gb|ADC74720.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Dehalococcoides sp. GT] Length = 181 Score = 160 bits (406), Expect = 7e-38, Method: Composition-based stats. Identities = 56/179 (31%), Positives = 95/179 (53%), Gaps = 9/179 (5%) Query: 2 GLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFG 61 + V + + + DA+F ++ GF + S + + R+ ++ + G Sbjct: 10 AVKNVLNNMFGPKICKQMPLGDAEFDKL-------GFALKSEINTI-FGRSLAIRALDSG 61 Query: 62 L-ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 +E+ S P YD+ERFG + ASPR +D++IV G +T MA A+R+ +D MP P Sbjct: 62 SDNSAEIELNNLSNPYYDVERFGISFVASPRHADILIVTGAVTQNMAIAVRKTFDAMPSP 121 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179 + VI++G A GG Y V+ G D+I+PV++ +PG PP +I +L L + +R+ Sbjct: 122 KLVIALGDDACSGGIASGGYGVLGGVDKILPVNLKIPGNPPEPAQIINALLGLMQSLRK 180 >gi|205353791|ref|YP_002227592.1| formate hydrogenlyase subunit 7 [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205273572|emb|CAR38559.1| formate hydrogenlyase subunit 7 [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|326628899|gb|EGE35242.1| formate hydrogenlyase subunit 7 [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 255 Score = 160 bits (405), Expect = 7e-38, Method: Composition-based stats. Identities = 52/153 (33%), Positives = 77/153 (50%), Gaps = 5/153 (3%) Query: 30 SSEITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRA 88 + + L R+ + + G C +E+ P +D ERFG Sbjct: 15 APMTVDESIASMKASLLKNIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVP 74 Query: 89 SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 148 SPR +D+++ G +T M S R + P+P+ IS G+C N GG +H Y V G D+ Sbjct: 75 SPRHADILLFTGAVTRAMRSPELRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDK 134 Query: 149 IVPVDIYVPGCPPTAEALIYGILL----LQKKI 177 IVPVD+Y+PGCPPT A +YG + L++KI Sbjct: 135 IVPVDVYIPGCPPTPAATLYGFAMALGLLEQKI 167 >gi|16761624|ref|NP_457241.1| formate hydrogenlyase subunit 7 [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|213052199|ref|ZP_03345077.1| formate hydrogenlyase subunit 7 [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213426140|ref|ZP_03358890.1| formate hydrogenlyase subunit 7 [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213648116|ref|ZP_03378169.1| formate hydrogenlyase subunit 7 [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213855567|ref|ZP_03383807.1| formate hydrogenlyase subunit 7 [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|289823877|ref|ZP_06543483.1| formate hydrogenlyase subunit 7 [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|25298993|pir||AC0846 formate hydrogenlyase chain 7 [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16503925|emb|CAD05954.1| formate hydrogenlyase subunit 7 [Salmonella enterica subsp. enterica serovar Typhi] Length = 255 Score = 160 bits (405), Expect = 7e-38, Method: Composition-based stats. Identities = 52/150 (34%), Positives = 76/150 (50%), Gaps = 5/150 (3%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPR 91 + L R+ + + G C +E+ P +D ERFG SPR Sbjct: 18 TVDESIASMKASLLKNIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPR 77 Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151 +D+++ G +T M S R + P+P+ IS G+C N GG +H Y V G D+IVP Sbjct: 78 HADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVP 137 Query: 152 VDIYVPGCPPTAEALIYGILL----LQKKI 177 VD+Y+PGCPPT A +YG + L++KI Sbjct: 138 VDVYIPGCPPTPAATLYGFAMALGLLEQKI 167 >gi|16130626|ref|NP_417199.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit [Escherichia coli str. K-12 substr. MG1655] gi|89109506|ref|AP_003286.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit [Escherichia coli str. K-12 substr. W3110] gi|157162165|ref|YP_001459483.1| formate hydrogenlyase, subunit G [Escherichia coli HS] gi|170019035|ref|YP_001723989.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Escherichia coli ATCC 8739] gi|170082295|ref|YP_001731615.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit [Escherichia coli str. K-12 substr. DH10B] gi|188491683|ref|ZP_02998953.1| NADH ubiquinone oxidoreductase [Escherichia coli 53638] gi|238901856|ref|YP_002927652.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit [Escherichia coli BW2952] gi|254037758|ref|ZP_04871816.1| hydrogenase 3 and formate hydrogenase complex [Escherichia sp. 1_1_43] gi|256024774|ref|ZP_05438639.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit [Escherichia sp. 4_1_40B] gi|300947003|ref|ZP_07161229.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 116-1] gi|300954959|ref|ZP_07167371.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 175-1] gi|301027398|ref|ZP_07190737.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 196-1] gi|301645301|ref|ZP_07245251.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 146-1] gi|307139406|ref|ZP_07498762.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit [Escherichia coli H736] gi|331643403|ref|ZP_08344534.1| formate hydrogenlyase subunit 7 (FHL subunit 7) (Hydrogenase-3component G) [Escherichia coli H736] gi|2506958|sp|P16433|HYCG_ECOLI RecName: Full=Formate hydrogenlyase subunit 7; Short=FHL subunit 7; AltName: Full=Hydrogenase-3 component G gi|882612|gb|AAA69229.1| formate hydrogenlyase subunit 7 [Escherichia coli str. K-12 substr. MG1655] gi|1789074|gb|AAC75761.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit [Escherichia coli str. K-12 substr. MG1655] gi|85675540|dbj|BAE76796.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit [Escherichia coli str. K12 substr. W3110] gi|157067845|gb|ABV07100.1| formate hydrogenlyase, subunit G [Escherichia coli HS] gi|169753963|gb|ACA76662.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Escherichia coli ATCC 8739] gi|169890130|gb|ACB03837.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit [Escherichia coli str. K-12 substr. DH10B] gi|188486882|gb|EDU61985.1| NADH ubiquinone oxidoreductase [Escherichia coli 53638] gi|226839382|gb|EEH71403.1| hydrogenase 3 and formate hydrogenase complex [Escherichia sp. 1_1_43] gi|238861454|gb|ACR63452.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit [Escherichia coli BW2952] gi|260448231|gb|ACX38653.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Escherichia coli DH1] gi|299879312|gb|EFI87523.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 196-1] gi|300318094|gb|EFJ67878.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 175-1] gi|300453390|gb|EFK17010.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 116-1] gi|301076419|gb|EFK91225.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 146-1] gi|309703078|emb|CBJ02410.1| formate hydrogenlyase subunit 7 [Escherichia coli ETEC H10407] gi|315137326|dbj|BAJ44485.1| hydrogenase 3 and formate hydrogenase complex [Escherichia coli DH1] gi|323172993|gb|EFZ58624.1| formate hydrogenlyase subunit 7 [Escherichia coli LT-68] gi|323935725|gb|EGB32039.1| NADH ubiquinone oxidoreductase [Escherichia coli E1520] gi|331036874|gb|EGI09098.1| formate hydrogenlyase subunit 7 (FHL subunit 7) (Hydrogenase-3component G) [Escherichia coli H736] gi|332344600|gb|AEE57934.1| formate hydrogenlyase subunit 7 [Escherichia coli UMNK88] Length = 255 Score = 160 bits (405), Expect = 7e-38, Method: Composition-based stats. Identities = 53/154 (34%), Positives = 77/154 (50%), Gaps = 5/154 (3%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPR 91 + L R+ + + G C +E+ P +D ERFG SPR Sbjct: 18 TVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPR 77 Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151 +D+++ G +T M S R + P+P+ IS G+C N GG +H Y V G D+IVP Sbjct: 78 HADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVP 137 Query: 152 VDIYVPGCPPTAEALIYGILL----LQKKIRRVG 181 VD+Y+PGCPPT A +YG + L++KI G Sbjct: 138 VDVYIPGCPPTPAATLYGFAMALGLLEQKIHARG 171 >gi|320186505|gb|EFW61233.1| Formate hydrogenlyase subunit 7 [Shigella flexneri CDC 796-83] Length = 255 Score = 160 bits (405), Expect = 7e-38, Method: Composition-based stats. Identities = 53/154 (34%), Positives = 77/154 (50%), Gaps = 5/154 (3%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPR 91 + L R+ + + G C +E+ P +D ERFG SPR Sbjct: 18 TVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPR 77 Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151 +D+++ G +T M S R + P+P+ IS G+C N GG +H Y V G D+IVP Sbjct: 78 HADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVP 137 Query: 152 VDIYVPGCPPTAEALIYGILL----LQKKIRRVG 181 VD+Y+PGCPPT A +YG + L++KI G Sbjct: 138 VDVYIPGCPPTPAATLYGFAMALGLLEQKIHARG 171 >gi|320180858|gb|EFW55781.1| Formate hydrogenlyase subunit 7 [Shigella boydii ATCC 9905] Length = 255 Score = 160 bits (405), Expect = 7e-38, Method: Composition-based stats. Identities = 53/154 (34%), Positives = 77/154 (50%), Gaps = 5/154 (3%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPR 91 + L R+ + + G C +E+ P +D ERFG SPR Sbjct: 18 TVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPR 77 Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151 +D+++ G +T M S R + P+P+ IS G+C N GG +H Y V G D+IVP Sbjct: 78 HADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVP 137 Query: 152 VDIYVPGCPPTAEALIYGILL----LQKKIRRVG 181 VD+Y+PGCPPT A +YG + L++KI G Sbjct: 138 VDVYIPGCPPTPAATLYGFAMVLGLLEQKIHARG 171 >gi|332161095|ref|YP_004297672.1| hydrogenase-4 component I [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325665325|gb|ADZ41969.1| hydrogenase-4 component I [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330863809|emb|CBX73904.1| formate hydrogenlyase subunit 7 [Yersinia enterocolitica W22703] Length = 267 Score = 160 bits (405), Expect = 7e-38, Method: Composition-based stats. Identities = 52/138 (37%), Positives = 78/138 (56%), Gaps = 5/138 (3%) Query: 46 LVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTN 104 L R+ + + G C +E+ + P +D ERFG ASPR +D+++ G +T Sbjct: 33 LKDIKRSAYVYRVDCGGCNGCEIEIFSSITPLFDTERFGIKVVASPRHADILLFTGAVTR 92 Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164 M + R Y+ P+P+ +S G+C GGG +H Y V G D IVP+D+Y+PGCPPT Sbjct: 93 AMRTPALRAYESAPDPKICVSYGACGCGGGIFHDLYCVWGGSDTIVPIDVYIPGCPPTPA 152 Query: 165 ALIYGIL----LLQKKIR 178 A IYG LL++K++ Sbjct: 153 ATIYGFAVALGLLEQKLK 170 >gi|91202885|emb|CAJ72524.1| strongly similar to membrane-bound [NiFe]-hydrogenase-3, small subunit (chain G) [Candidatus Kuenenia stuttgartiensis] Length = 262 Score = 160 bits (405), Expect = 8e-38, Method: Composition-based stats. Identities = 51/130 (39%), Positives = 81/130 (62%), Gaps = 1/130 (0%) Query: 51 RTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASA 109 R+ + + G C E++ P +DL+RFG ASPR +D ++V G T + +A Sbjct: 133 RSLHVREIDAGSCNGCEWEVVALLNPVHDLQRFGIDIVASPRHADCLLVTGPPTRNLETA 192 Query: 110 LRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYG 169 L + Y PEP+ VI++G+CA GG + SY+ G D++VPVD+Y+PGCPP +A+IYG Sbjct: 193 LIKGYHATPEPKMVIALGTCACSGGIFSNSYATKNGIDKVVPVDVYIPGCPPRPQAIIYG 252 Query: 170 ILLLQKKIRR 179 LL +++++ Sbjct: 253 FLLALERVQK 262 >gi|251790300|ref|YP_003005021.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Dickeya zeae Ech1591] gi|247538921|gb|ACT07542.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Dickeya zeae Ech1591] Length = 263 Score = 160 bits (405), Expect = 8e-38, Method: Composition-based stats. Identities = 54/137 (39%), Positives = 78/137 (56%), Gaps = 5/137 (3%) Query: 46 LVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTN 104 L R+ + + G C +E+ A P +D ERFG ASPR +D+++ G +T Sbjct: 30 LKDIQRSAYVYRVDCGGCNGCEIEIFSAITPLFDAERFGIKVVASPRHADILLFTGAVTR 89 Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164 M + R Y+ P+P+ IS G+C GGG +H Y V G D+IVP+D+Y+PGCPPT Sbjct: 90 AMRTPALRAYESAPDPKICISYGACGCGGGIFHDLYCVWGGSDKIVPIDVYIPGCPPTPA 149 Query: 165 ALIYGIL----LLQKKI 177 A IYG LL++K+ Sbjct: 150 ATIYGFAVALGLLEQKL 166 >gi|110806654|ref|YP_690174.1| hydrogenase activity [Shigella flexneri 5 str. 8401] gi|110616202|gb|ABF04869.1| hydrogenase activity [Shigella flexneri 5 str. 8401] Length = 255 Score = 160 bits (405), Expect = 8e-38, Method: Composition-based stats. Identities = 53/154 (34%), Positives = 77/154 (50%), Gaps = 5/154 (3%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPR 91 + L R+ + + G C +E+ P +D ERFG SPR Sbjct: 18 TMDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPR 77 Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151 +D+++ G +T M S R + P+P+ IS G+C N GG +H Y V G D+IVP Sbjct: 78 HADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVP 137 Query: 152 VDIYVPGCPPTAEALIYGILL----LQKKIRRVG 181 VD+Y+PGCPPT A +YG + L++KI G Sbjct: 138 VDVYIPGCPPTPAATLYGFAMALGLLEQKIHARG 171 >gi|307825300|ref|ZP_07655520.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methylobacter tundripaludum SV96] gi|307733756|gb|EFO04613.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methylobacter tundripaludum SV96] Length = 171 Score = 160 bits (404), Expect = 9e-38, Method: Composition-based stats. Identities = 52/159 (32%), Positives = 88/159 (55%), Gaps = 9/159 (5%) Query: 21 KVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDL 79 DA+ ++ E + + +D+ ++ + ++ + G C +E+ + P YD+ Sbjct: 21 PKDAELEQLGIE------IKSRIDK--KFSGSIAIRQVDAGSCNGCELEIHALNNPFYDI 72 Query: 80 ERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS 139 ERFG ASPR +DV++V G ++ M +AL R Y+ P P++VI+ G CA GG + S Sbjct: 73 ERFGVHFVASPRHADVLLVTGPVSRHMQTALLRTYEATPNPKWVIAAGDCAACGGEFGVS 132 Query: 140 YSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 Y+ ++PVD+ +PGCPPT AL+ G+L L + Sbjct: 133 YASCGAVSNVIPVDVVIPGCPPTPLALMKGLLGLINAKK 171 >gi|83309305|ref|YP_419569.1| Ni,Fe-hydrogenase III small subunit [Magnetospirillum magneticum AMB-1] gi|82944146|dbj|BAE49010.1| Ni,Fe-hydrogenase III small subunit [Magnetospirillum magneticum AMB-1] Length = 178 Score = 160 bits (404), Expect = 9e-38, Method: Composition-based stats. Identities = 52/129 (40%), Positives = 80/129 (62%), Gaps = 1/129 (0%) Query: 52 TGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASAL 110 + S+ + G C +E+ + P YDLERFG ASPR +DV++V G +T M AL Sbjct: 49 SLSIREVDAGSCNGCELEIHAVNHPIYDLERFGIRFVASPRHADVLLVTGPVTRNMEEAL 108 Query: 111 RRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGI 170 RR + PEPR++++MG C GG + SY+VV G +VPVD+++PGCPP+ ++ G+ Sbjct: 109 RRTVEATPEPRWIVAMGDCGKDGGCFAGSYAVVGGVSDVVPVDLHIPGCPPSPRQILAGL 168 Query: 171 LLLQKKIRR 179 L L + + + Sbjct: 169 LALLETVDQ 177 >gi|170765639|ref|ZP_02900450.1| formate hydrogenlyase, subunit G [Escherichia albertii TW07627] gi|170124785|gb|EDS93716.1| formate hydrogenlyase, subunit G [Escherichia albertii TW07627] Length = 255 Score = 160 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 53/154 (34%), Positives = 77/154 (50%), Gaps = 5/154 (3%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPR 91 + L R+ + + G C +E+ P +D ERFG SPR Sbjct: 18 TVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPR 77 Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151 +D+++ G +T M S R + P+P+ IS G+C N GG +H Y V G D+IVP Sbjct: 78 HADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVP 137 Query: 152 VDIYVPGCPPTAEALIYGILL----LQKKIRRVG 181 VD+Y+PGCPPT A +YG + L++KI G Sbjct: 138 VDVYIPGCPPTPAATLYGFAMALGLLEQKIHARG 171 >gi|312965023|ref|ZP_07779263.1| formate hydrogenlyase subunit 7 [Escherichia coli 2362-75] gi|331648437|ref|ZP_08349525.1| formate hydrogenlyase subunit 7 (FHL subunit 7) (Hydrogenase-3component G) [Escherichia coli M605] gi|281179722|dbj|BAI56052.1| formate hydrogenlyase subunit [Escherichia coli SE15] gi|312290579|gb|EFR18459.1| formate hydrogenlyase subunit 7 [Escherichia coli 2362-75] gi|331042184|gb|EGI14326.1| formate hydrogenlyase subunit 7 (FHL subunit 7) (Hydrogenase-3component G) [Escherichia coli M605] Length = 255 Score = 160 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 53/154 (34%), Positives = 77/154 (50%), Gaps = 5/154 (3%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPR 91 + L R+ + + G C +E+ P +D ERFG SPR Sbjct: 18 TVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPR 77 Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151 +D+++ G +T M S R + P+P+ IS G+C N GG +H Y V G D+IVP Sbjct: 78 HADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVP 137 Query: 152 VDIYVPGCPPTAEALIYGILL----LQKKIRRVG 181 VD+Y+PGCPPT A +YG + L++KI G Sbjct: 138 VDVYIPGCPPTPAATLYGFAMALGLLEQKIHARG 171 >gi|238921134|ref|YP_002934649.1| hydrogenase-4 component I [Edwardsiella ictaluri 93-146] gi|238870703|gb|ACR70414.1| hydrogenase-4 component I [Edwardsiella ictaluri 93-146] Length = 274 Score = 160 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 56/173 (32%), Positives = 85/173 (49%), Gaps = 6/173 (3%) Query: 11 ISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEM 69 + + DA+ + + + + L R+ + + G C +E+ Sbjct: 7 TPPAAGALIGPRDANGQPVPITLDAQAARLKQT-LLKDIRRSAYVYRVDCGGCNGCEIEI 65 Query: 70 MQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSC 129 A P +D ERFG ASPR +D+++ G +T M R Y P+P+ VIS G+C Sbjct: 66 FAAISPLFDAERFGIKVVASPRHADILLFTGAVTRAMRIPAIRAYQSAPDPKIVISYGAC 125 Query: 130 ANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKKIR 178 GG +H Y V G D+IVPVD+Y+PGCPPT A +YG LL +K++ Sbjct: 126 GCSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAVALGLLDQKLK 178 >gi|318604974|emb|CBY26472.1| formate hydrogenlyase subunit 7 [Yersinia enterocolitica subsp. palearctica Y11] Length = 267 Score = 160 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 52/138 (37%), Positives = 78/138 (56%), Gaps = 5/138 (3%) Query: 46 LVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTN 104 L R+ + + G C +E+ + P +D ERFG ASPR +D+++ G +T Sbjct: 33 LKDIKRSAYVYRVDCGGCNGCEIEIFSSITPLFDTERFGIKVVASPRHADILLFTGAVTR 92 Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164 M + R Y+ P+P+ +S G+C GGG +H Y V G D IVP+D+Y+PGCPPT Sbjct: 93 AMRTPALRAYESAPDPKICVSYGACGCGGGIFHDLYCVWGGSDTIVPIDVYIPGCPPTPA 152 Query: 165 ALIYGIL----LLQKKIR 178 A IYG LL++K++ Sbjct: 153 ATIYGFAVALGLLEQKLK 170 >gi|73667700|ref|YP_303715.1| ech hydrogenase subunit C [Methanosarcina barkeri str. Fusaro] gi|3005969|emb|CAA76119.1| echC [Methanosarcina barkeri] gi|72394862|gb|AAZ69135.1| ech hydrogenase subunit C [Methanosarcina barkeri str. Fusaro] Length = 156 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 45/123 (36%), Positives = 78/123 (63%), Gaps = 3/123 (2%) Query: 52 TGSLMWMTF---GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108 S + C +E++ P YD ERFG +P+Q+D+M+V G++ K + Sbjct: 4 AKSPWIIHVNCNSCNGCDIEVVACLTPLYDAERFGVLNIGTPKQADIMVVTGSVNYKNVN 63 Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168 L+ +Y+Q+P+P+ V+++G+CA+ GG +H Y+V+ G D+++PVD YVPGC P EA++ Sbjct: 64 VLKNIYNQIPDPKVVLAVGACASTGGIFHDCYNVIGGVDQVIPVDAYVPGCCPRPEAILD 123 Query: 169 GIL 171 G++ Sbjct: 124 GVV 126 >gi|242238721|ref|YP_002986902.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Dickeya dadantii Ech703] gi|242130778|gb|ACS85080.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Dickeya dadantii Ech703] Length = 263 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 54/137 (39%), Positives = 78/137 (56%), Gaps = 5/137 (3%) Query: 46 LVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTN 104 L R+ + + G C +E+ A P +D ERFG ASPR +D+++ G +T Sbjct: 30 LKDIQRSAYVYRVDCGGCNGCEIEIFSAITPLFDAERFGIKVVASPRHADILLFTGAVTR 89 Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164 M + R Y+ P+P+ IS G+C GGG +H Y V G D+IVP+D+Y+PGCPPT Sbjct: 90 AMRTPALRAYESAPDPKICISYGACGCGGGIFHDLYCVWGGSDKIVPIDVYIPGCPPTPA 149 Query: 165 ALIYGIL----LLQKKI 177 A IYG LL++K+ Sbjct: 150 ATIYGFAVALGLLEQKL 166 >gi|288933891|ref|YP_003437950.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Klebsiella variicola At-22] gi|288888620|gb|ADC56938.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Klebsiella variicola At-22] Length = 255 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 55/167 (32%), Positives = 82/167 (49%), Gaps = 6/167 (3%) Query: 16 SCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASM 74 S L D + + + + L R+ + + G C +E+ Sbjct: 2 STLLGPRDENGTPVP-MTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLS 60 Query: 75 PRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGG 134 P +D ERFG SPR +D+++ G +T M S R + P+P+ IS G+C N GG Sbjct: 61 PLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGG 120 Query: 135 YYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILL----LQKKI 177 +H Y V G D+IVPVD+Y+PGCPPT A +YG + L++KI Sbjct: 121 IFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKI 167 >gi|325295363|ref|YP_004281877.1| NADH-quinone oxidoreductase, B subunit [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065811|gb|ADY73818.1| NADH-quinone oxidoreductase, B subunit [Desulfurobacterium thermolithotrophum DSM 11699] Length = 156 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 60/138 (43%), Positives = 84/138 (60%) Query: 45 QLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTN 104 + + W+R S + F CC++E++ PR+D ER+GF SPRQ+D +IV G ++ Sbjct: 4 KFLDWSRANSPWGVHFCSGCCSLEVLALMGPRFDWERYGFMMTPSPRQADFIIVTGLVSK 63 Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164 K+ L RVY QMPEPRYV MG+CA GGG Y S V + +P DI+V GCPP E Sbjct: 64 KVLPVLLRVYQQMPEPRYVFGMGACAGGGGPYWDSDFVAVDVSQYIPFDIFVTGCPPNPE 123 Query: 165 ALIYGILLLQKKIRRVGN 182 A + G+L L++ I + N Sbjct: 124 ATLEGLLKLKEIILKNKN 141 >gi|295097300|emb|CBK86390.1| Ni,Fe-hydrogenase III small subunit [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 255 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 52/150 (34%), Positives = 76/150 (50%), Gaps = 5/150 (3%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPR 91 + L R+ + + G C +E+ P +D ERFG SPR Sbjct: 18 TVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPR 77 Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151 +D+++ G +T M S R + P+P+ IS G+C N GG +H Y V G D+IVP Sbjct: 78 HADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVP 137 Query: 152 VDIYVPGCPPTAEALIYGILL----LQKKI 177 VD+Y+PGCPPT A +YG + L++KI Sbjct: 138 VDVYIPGCPPTPAATLYGFAMALGLLEQKI 167 >gi|309702767|emb|CBJ02098.1| hydrogenase-4 component I [Escherichia coli ETEC H10407] Length = 251 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 51/132 (38%), Positives = 75/132 (56%), Gaps = 5/132 (3%) Query: 51 RTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASA 109 R ++ + G C +E+ A P +D ERFG +SPR +D+++ G +T M Sbjct: 31 RRSAVYRVDCGGCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMRMP 90 Query: 110 LRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYG 169 R Y+ P+ + +S G+C GGG +H YSV G D IVP+D+++PGCPPT A I+G Sbjct: 91 ALRAYESAPDHKICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHG 150 Query: 170 IL----LLQKKI 177 LLQ+KI Sbjct: 151 FAVALGLLQQKI 162 >gi|260913690|ref|ZP_05920166.1| hydrogenase-4 component I [Pasteurella dagmatis ATCC 43325] gi|260632229|gb|EEX50404.1| hydrogenase-4 component I [Pasteurella dagmatis ATCC 43325] Length = 254 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 50/143 (34%), Positives = 77/143 (53%), Gaps = 5/143 (3%) Query: 46 LVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTN 104 L R+ + + G C +E+ P +D ERFG ASPR +D+++ G +T Sbjct: 26 LKDIQRSAYVYRVDCGGCNGCEIEIFSTITPVFDAERFGIKVVASPRHADILLFTGAVTR 85 Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164 M + R Y+ P+P+ +S G+C GG +H Y V G D+IVP+D+Y+PGCPPT Sbjct: 86 AMLAPALRAYEAAPDPKICVSYGACGCSGGIFHDLYCVWGGSDKIVPIDVYIPGCPPTPA 145 Query: 165 ALIYGILL----LQKKIRRVGNV 183 A IYG + L +K++ + Sbjct: 146 ATIYGFAMALGLLDQKLKGKQEI 168 >gi|261368110|ref|ZP_05980993.1| NADH dehydrogenase I, B subunit [Subdoligranulum variabile DSM 15176] gi|282569868|gb|EFB75403.1| NADH dehydrogenase I, B subunit [Subdoligranulum variabile DSM 15176] Length = 152 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 40/130 (30%), Positives = 76/130 (58%), Gaps = 3/130 (2%) Query: 52 TGSLMWMTF---GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108 S + + C +E++ + P+YD+ERFG P Q+D++++ G + ++ Sbjct: 5 AKSPWMLHYDASSCNGCDIEVLACTTPKYDIERFGIINTGDPFQADILLITGGVNSQCEG 64 Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168 +R++Y+QMP P+ V+++G CA GG + Y++ G D ++PVD+YVPGC +A+I Sbjct: 65 VVRQLYEQMPNPKVVVAVGICACTGGVFKDCYNIKGGIDTVIPVDVYVPGCAARPQAIID 124 Query: 169 GILLLQKKIR 178 G++ + + Sbjct: 125 GVVKALEILE 134 >gi|29143108|ref|NP_806450.1| formate hydrogenlyase subunit 7 [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|29138741|gb|AAO70310.1| formate hydrogenlyase subunit 7 [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 255 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 52/150 (34%), Positives = 76/150 (50%), Gaps = 5/150 (3%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPR 91 + L R+ + + G C +E+ P +D ERFG SPR Sbjct: 18 TVDESIASMKASLLKNIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPR 77 Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151 +D+++ G +T M S R + P+P+ IS G+C N GG +H Y V G D+IVP Sbjct: 78 HADILLFTGVVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVP 137 Query: 152 VDIYVPGCPPTAEALIYGILL----LQKKI 177 VD+Y+PGCPPT A +YG + L++KI Sbjct: 138 VDVYIPGCPPTPAATLYGFAMALGLLEQKI 167 >gi|296104395|ref|YP_003614541.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295058854|gb|ADF63592.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 255 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 52/150 (34%), Positives = 76/150 (50%), Gaps = 5/150 (3%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPR 91 + L R+ + + G C +E+ P +D ERFG SPR Sbjct: 18 TVEESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPR 77 Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151 +D+++ G +T M S R + P+P+ IS G+C N GG +H Y V G D+IVP Sbjct: 78 HADILLFTGAVTRAMRSPALRAWQSTPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVP 137 Query: 152 VDIYVPGCPPTAEALIYGILL----LQKKI 177 VD+Y+PGCPPT A +YG + L++KI Sbjct: 138 VDVYIPGCPPTPAATLYGFAMALGLLEQKI 167 >gi|152971578|ref|YP_001336687.1| hypothetical protein KPN_03056 [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|206580829|ref|YP_002236935.1| formate hydrogenlyase, subunit G [Klebsiella pneumoniae 342] gi|238896176|ref|YP_002920912.1| hydrogenase 3 small subunit [Klebsiella pneumoniae NTUH-K2044] gi|290511028|ref|ZP_06550397.1| formate hydrogenlyase subunit 7 hycG [Klebsiella sp. 1_1_55] gi|150956427|gb|ABR78457.1| hypothetical protein KPN_03056 [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|206569887|gb|ACI11663.1| formate hydrogenlyase, subunit G [Klebsiella pneumoniae 342] gi|238548494|dbj|BAH64845.1| hydrogenase 3 small subunit [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|289776021|gb|EFD84020.1| formate hydrogenlyase subunit 7 hycG [Klebsiella sp. 1_1_55] Length = 255 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 52/150 (34%), Positives = 76/150 (50%), Gaps = 5/150 (3%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPR 91 + L R+ + + G C +E+ P +D ERFG SPR Sbjct: 18 TVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPR 77 Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151 +D+++ G +T M S R + P+P+ IS G+C N GG +H Y V G D+IVP Sbjct: 78 HADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVP 137 Query: 152 VDIYVPGCPPTAEALIYGILL----LQKKI 177 VD+Y+PGCPPT A +YG + L++KI Sbjct: 138 VDVYIPGCPPTPAATLYGFAMALGLLEQKI 167 >gi|238761067|ref|ZP_04622044.1| Formate hydrogenlyase subunit 7 [Yersinia kristensenii ATCC 33638] gi|238761320|ref|ZP_04622296.1| Formate hydrogenlyase subunit 7 [Yersinia kristensenii ATCC 33638] gi|238700294|gb|EEP93035.1| Formate hydrogenlyase subunit 7 [Yersinia kristensenii ATCC 33638] gi|238700547|gb|EEP93287.1| Formate hydrogenlyase subunit 7 [Yersinia kristensenii ATCC 33638] Length = 254 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 52/142 (36%), Positives = 79/142 (55%), Gaps = 5/142 (3%) Query: 46 LVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTN 104 L R+ + + G C +E+ + P +D ERFG ASPR +D+++ G +T Sbjct: 19 LKDIKRSAYVYRVDCGGCNGCEIEIFSSITPVFDTERFGIKVVASPRHADILLFTGAVTR 78 Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164 M + R Y+ P+P+ +S G+C GGG +H Y V G D IVP+D+Y+PGCPPT Sbjct: 79 AMRTPALRAYESAPDPKICVSYGACGCGGGIFHDLYCVWGGSDTIVPIDVYIPGCPPTPA 138 Query: 165 ALIYGIL----LLQKKIRRVGN 182 A IYG LL++K++ + Sbjct: 139 ATIYGFAVALGLLEQKLKAEDH 160 >gi|270308166|ref|YP_003330224.1| hydrogenase, EchC subunit [Dehalococcoides sp. VS] gi|270154058|gb|ACZ61896.1| hydrogenase, EchC subunit [Dehalococcoides sp. VS] Length = 155 Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats. Identities = 46/131 (35%), Positives = 76/131 (58%), Gaps = 3/131 (2%) Query: 45 QLVTWARTGSLMWMTF---GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGT 101 VT ++ S + F C +E++ P YD+ERFG +P+ SDV++V G Sbjct: 2 DFVTKSQIKSPWLLHFDCGSCNGCDIEILACLTPIYDVERFGIVNMGNPKHSDVLLVTGP 61 Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP 161 + L+ +Y QMP+P+ VI +G+C GG +H +++ G D+++PVD+YVPGC Sbjct: 62 ANKRNYRVLQNLYQQMPDPKVVIVIGTCGCSGGVFHNCPNILGGVDKVIPVDVYVPGCAA 121 Query: 162 TAEALIYGILL 172 EA+I G+++ Sbjct: 122 RPEAIIDGVVM 132 >gi|73749343|ref|YP_308582.1| hydrogenase, group 4, HycG subunit [Dehalococcoides sp. CBDB1] gi|147669953|ref|YP_001214771.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Dehalococcoides sp. BAV1] gi|73661059|emb|CAI83666.1| hydrogenase, group 4, HycG subunit [Dehalococcoides sp. CBDB1] gi|146270901|gb|ABQ17893.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Dehalococcoides sp. BAV1] Length = 171 Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats. Identities = 56/178 (31%), Positives = 95/178 (53%), Gaps = 9/178 (5%) Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62 + V + + + DA+F ++ GF + S + + R+ ++ + G Sbjct: 1 MKNVLNNMFGPKICKQMPLGDAEFDKL-------GFALKSEINTI-FGRSLAIRALDSGS 52 Query: 63 -ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPR 121 +E+ S P YD+ERFG + ASPR +D++IV G +T MA A+R+ +D MP P+ Sbjct: 53 DNAAEIELNNLSNPYYDVERFGISFVASPRHADILIVTGAVTQNMAIAVRKTFDAMPSPK 112 Query: 122 YVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179 VI++G A GG Y V+ G D+I+PV++ +PG PP +I +L L + +R+ Sbjct: 113 LVIALGDDACSGGIASGGYGVLGGVDKILPVNLKIPGNPPEPAQIINSLLGLMQSLRK 170 >gi|206890862|ref|YP_002248820.1| hydrogenase-4 component I [Thermodesulfovibrio yellowstonii DSM 11347] gi|206742800|gb|ACI21857.1| hydrogenase-4 component I [Thermodesulfovibrio yellowstonii DSM 11347] Length = 156 Score = 159 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 51/132 (38%), Positives = 80/132 (60%), Gaps = 7/132 (5%) Query: 54 SLMWMT---FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASAL 110 S+ C +E++ P YD+ERFG +SPR +D ++++G +T + Sbjct: 15 SVWIFHVNTGACNGCDIELLDVLTPYYDIERFGMKAVSSPRHADALVISGPVTRPTVEFV 74 Query: 111 RRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGI 170 + VY+ PEP+ VI++GSCA GG + SY+VV G D+I+PV +Y+PGCPP EA+++GI Sbjct: 75 KSVYEATPEPKIVIALGSCATAGGIWFDSYNVVGGVDKIIPVHLYIPGCPPRPEAILFGI 134 Query: 171 LLL----QKKIR 178 +KKI+ Sbjct: 135 AQALGISKKKIK 146 >gi|284006929|emb|CBA72200.1| hydrogenase-4 component I [Arsenophonus nasoniae] Length = 255 Score = 159 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 51/137 (37%), Positives = 75/137 (54%), Gaps = 5/137 (3%) Query: 46 LVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTN 104 L R+ + + G C +E+ P +D ERFG SPR +D+++ G +T Sbjct: 31 LKKIKRSAYVYRVDCGGCNGCEIEIFATLSPMFDAERFGIKVVPSPRHADILLFTGAVTR 90 Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164 M + R + P+P+ IS G+C N GG +H Y V G D+IVPVD+Y+PGCPPT Sbjct: 91 AMRTPALRAWHSAPDPKIAISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPA 150 Query: 165 ALIYGILL----LQKKI 177 A +YG + L++KI Sbjct: 151 ATLYGFAMALGLLEQKI 167 >gi|213417095|ref|ZP_03350239.1| formate hydrogenlyase subunit 7 [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 229 Score = 159 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 52/150 (34%), Positives = 76/150 (50%), Gaps = 5/150 (3%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPR 91 + L R+ + + G C +E+ P +D ERFG SPR Sbjct: 18 TVDESIASMKASLLKNIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPR 77 Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151 +D+++ G +T M S R + P+P+ IS G+C N GG +H Y V G D+IVP Sbjct: 78 HADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVP 137 Query: 152 VDIYVPGCPPTAEALIYGILL----LQKKI 177 VD+Y+PGCPPT A +YG + L++KI Sbjct: 138 VDVYIPGCPPTPAATLYGFAMALGLLEQKI 167 >gi|313683183|ref|YP_004060921.1| ech hydrogenase subunit c [Sulfuricurvum kujiense DSM 16994] gi|313156043|gb|ADR34721.1| ech hydrogenase subunit C [Sulfuricurvum kujiense DSM 16994] Length = 173 Score = 159 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 48/139 (34%), Positives = 78/139 (56%), Gaps = 7/139 (5%) Query: 51 RTGSLMWMTF---GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMA 107 R S + + C +E++ A P+YDLERFG +P+QSD+ +V G +T + Sbjct: 8 RKKSPWVLHYNAGSCNGCDIEILAALSPKYDLERFGVINTGNPKQSDIFLVTGPVTYRSR 67 Query: 108 SALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALI 167 L +Y Q+PEP+ V+++GSC GG + Y+V G DR +PVD+YVPGC + + +I Sbjct: 68 ERLVELYSQIPEPKVVVAVGSCTTTGGVFRGMYNVEDGIDRYIPVDVYVPGCASSPQLII 127 Query: 168 YGILL----LQKKIRRVGN 182 ++ L+ K + + Sbjct: 128 DALVKAGEILESKSKEIEK 146 >gi|261342161|ref|ZP_05970019.1| hydrogenase-4 component I [Enterobacter cancerogenus ATCC 35316] gi|288315494|gb|EFC54432.1| hydrogenase-4 component I [Enterobacter cancerogenus ATCC 35316] Length = 255 Score = 159 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 52/150 (34%), Positives = 76/150 (50%), Gaps = 5/150 (3%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPR 91 + L R+ + + G C +E+ P +D ERFG SPR Sbjct: 18 TVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPR 77 Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151 +D+++ G +T M S R + P+P+ IS G+C N GG +H Y V G D+IVP Sbjct: 78 HADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVP 137 Query: 152 VDIYVPGCPPTAEALIYGILL----LQKKI 177 VD+Y+PGCPPT A +YG + L++KI Sbjct: 138 VDVYIPGCPPTPAATLYGFAMALGLLEQKI 167 >gi|148791384|gb|ABR12484.1| hydrogenase 3 small subunit [Klebsiella oxytoca] Length = 255 Score = 159 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 52/150 (34%), Positives = 76/150 (50%), Gaps = 5/150 (3%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPR 91 + L R+ + + G C +E+ P +D ERFG SPR Sbjct: 18 TVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPR 77 Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151 +D+++ G +T M S R + P+P+ IS G+C N GG +H Y V G D+IVP Sbjct: 78 HADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVP 137 Query: 152 VDIYVPGCPPTAEALIYGILL----LQKKI 177 VD+Y+PGCPPT A +YG + L++KI Sbjct: 138 VDVYIPGCPPTPAATLYGFAMALGLLEQKI 167 >gi|324497290|gb|ADY39445.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [bacterium enrichment culture clone P24-9H] Length = 255 Score = 159 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 52/150 (34%), Positives = 76/150 (50%), Gaps = 5/150 (3%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPR 91 + L R+ + + G C +E+ P +D ERFG SPR Sbjct: 18 TVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPR 77 Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151 +D+++ G +T M S R + P+P+ IS G+C N GG +H Y V G D+IVP Sbjct: 78 HADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVP 137 Query: 152 VDIYVPGCPPTAEALIYGILL----LQKKI 177 VD+Y+PGCPPT A +YG + L++KI Sbjct: 138 VDVYIPGCPPTPAATLYGFAMALGLLEQKI 167 >gi|288961303|ref|YP_003451642.1| NADH ubiquinone oxidoreductase [Azospirillum sp. B510] gi|288913611|dbj|BAI75098.1| NADH ubiquinone oxidoreductase [Azospirillum sp. B510] Length = 259 Score = 159 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 51/129 (39%), Positives = 75/129 (58%), Gaps = 4/129 (3%) Query: 60 FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119 G C +E+ + P +D ERFG ASPR +D+++ G +T M R Y+ P+ Sbjct: 33 GGCNGCEIEIFSSITPVFDAERFGIKVVASPRHADILLFTGAVTRSMRMPALRAYEAAPD 92 Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQK 175 P+ V+S G+C GG +H Y V G D IVPVD+Y+PGCPPT A I+G LL++ Sbjct: 93 PKIVVSYGACGCTGGIFHDLYCVWGGTDNIVPVDVYIPGCPPTPAATIHGFAVALGLLEQ 152 Query: 176 KIRRVGNVK 184 K++ +V+ Sbjct: 153 KLKAEIHVE 161 >gi|218696313|ref|YP_002403980.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit [Escherichia coli 55989] gi|218353045|emb|CAU98870.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit [Escherichia coli 55989] Length = 255 Score = 159 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 52/154 (33%), Positives = 76/154 (49%), Gaps = 5/154 (3%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPR 91 + L R+ + + G C +E+ P +D ERFG SPR Sbjct: 18 TVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPR 77 Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151 +D+++ G +T M S + P+P+ IS G+C N GG +H Y V G D+IVP Sbjct: 78 HADILLFTGAVTRAMRSPALCAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVP 137 Query: 152 VDIYVPGCPPTAEALIYGILL----LQKKIRRVG 181 VD+Y+PGCPPT A +YG + L++KI G Sbjct: 138 VDVYIPGCPPTPAATLYGFAMALGLLEQKIHARG 171 >gi|31580608|gb|AAP51027.1| EchC [Desulfovibrio gigas] Length = 147 Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats. Identities = 48/135 (35%), Positives = 77/135 (57%), Gaps = 4/135 (2%) Query: 45 QLVTWARTGSLMWMTFGL---ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGT 101 + +R S M F C +E + P FG +P+ +D++IV+GT Sbjct: 6 DFIKSSRIKSPWLMHFDCGFCNGCDIETLACLDPHLRRGTFGIVNVGNPKHADILIVSGT 65 Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP 161 + ++ L +Y+QMP P+ V+++G+C GG + + +VV G D+++PVD YVPGCPP Sbjct: 66 VNHRNKKVLANLYEQMPHPKVVVAIGACGLSGGVFREAPNVVGGIDKVIPVDAYVPGCPP 125 Query: 162 TAEALIYGILL-LQK 175 EA+I G++L LQK Sbjct: 126 KPEAIIDGVVLGLQK 140 >gi|82545206|ref|YP_409153.1| hydrogenase activity [Shigella boydii Sb227] gi|81246617|gb|ABB67325.1| hydrogenase activity [Shigella boydii Sb227] gi|332092087|gb|EGI97165.1| formate hydrogenlyase subunit 7 [Shigella boydii 3594-74] Length = 255 Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats. Identities = 53/154 (34%), Positives = 76/154 (49%), Gaps = 5/154 (3%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPR 91 + L R+ + + G C +E+ P +D ERFG SPR Sbjct: 18 TVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPR 77 Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151 +D+++ G +T M S R + P+P+ IS G+C N GG +H Y V G D+IVP Sbjct: 78 HADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVP 137 Query: 152 VDIYVPGCPPTAEALIYGILL----LQKKIRRVG 181 VD+Y+PGCPPT A +YG + L +KI G Sbjct: 138 VDVYIPGCPPTPAATLYGFAMALGLLVQKIHARG 171 >gi|123443021|ref|YP_001008384.1| hydrogenase-4 component I [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122089982|emb|CAL12839.1| hydrogenase-4 component I [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 268 Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats. Identities = 52/138 (37%), Positives = 78/138 (56%), Gaps = 5/138 (3%) Query: 46 LVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTN 104 L R+ + + G C +E+ + P +D ERFG ASPR +D+++ G +T Sbjct: 34 LKDIKRSAYVYRVDCGGCNGCEIEIFSSITPLFDTERFGIKVVASPRHADILLFTGAVTR 93 Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164 M + R Y+ P+P+ +S G+C GGG +H Y V G D IVP+D+Y+PGCPPT Sbjct: 94 AMRTPALRAYESAPDPKICVSYGACGCGGGIFHDLYCVWGGSDTIVPIDVYIPGCPPTPA 153 Query: 165 ALIYGIL----LLQKKIR 178 A IYG LL++K++ Sbjct: 154 ATIYGFAVALGLLEQKLK 171 >gi|157370668|ref|YP_001478657.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Serratia proteamaculans 568] gi|157322432|gb|ABV41529.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Serratia proteamaculans 568] Length = 265 Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats. Identities = 52/123 (42%), Positives = 70/123 (56%), Gaps = 4/123 (3%) Query: 60 FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119 G C +E+ A P +D ERFG SPR +D+++ G +T M R + P+ Sbjct: 47 GGCNGCEIEIFAAVSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRIPAIRAWQASPD 106 Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILL----LQK 175 P+ IS G+C N GG +H Y V G DRIVPVD+Y+PGCPPT A IYG + L + Sbjct: 107 PKISISYGACGNSGGIFHDLYCVWGGTDRIVPVDVYIPGCPPTPAATIYGFAMALGLLDQ 166 Query: 176 KIR 178 KI+ Sbjct: 167 KIK 169 >gi|238793444|ref|ZP_04637069.1| Formate hydrogenlyase subunit 7 [Yersinia intermedia ATCC 29909] gi|238727217|gb|EEQ18746.1| Formate hydrogenlyase subunit 7 [Yersinia intermedia ATCC 29909] Length = 262 Score = 158 bits (401), Expect = 3e-37, Method: Composition-based stats. Identities = 52/138 (37%), Positives = 78/138 (56%), Gaps = 5/138 (3%) Query: 46 LVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTN 104 L R+ + + G C +E+ + P +D ERFG ASPR +D+++ G +T Sbjct: 27 LKDIKRSAYVYRVDCGGCNGCEIEIFSSITPLFDTERFGIKVVASPRHADILLFTGAVTR 86 Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164 M + R Y+ P+P+ +S G+C GGG +H Y V G D IVP+D+Y+PGCPPT Sbjct: 87 AMRAPALRAYESAPDPKICVSYGACGCGGGIFHDLYCVWGGSDTIVPIDVYIPGCPPTPA 146 Query: 165 ALIYGIL----LLQKKIR 178 A IYG LL++K++ Sbjct: 147 ATIYGFAVALGLLEQKLK 164 >gi|261345089|ref|ZP_05972733.1| hydrogenase-4 component I [Providencia rustigianii DSM 4541] gi|282566773|gb|EFB72308.1| hydrogenase-4 component I [Providencia rustigianii DSM 4541] Length = 260 Score = 158 bits (401), Expect = 3e-37, Method: Composition-based stats. Identities = 53/137 (38%), Positives = 76/137 (55%), Gaps = 5/137 (3%) Query: 46 LVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTN 104 L R+ + + G C +E+ A P +D ERFG ASPR +D+++ G +T Sbjct: 30 LKDIKRSAYVYRVDCGGCNGCEIEIFSAITPVFDAERFGIKVVASPRHADILLFTGAVTR 89 Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164 M R Y+ P+P+ IS G+C GGG +H Y V G + IVP+D+++PGCPPT Sbjct: 90 AMRMPALRAYESAPDPKICISYGACGCGGGIFHDLYCVWGGSEHIVPIDVWIPGCPPTPA 149 Query: 165 ALIYGIL----LLQKKI 177 A IYG LLQ+K+ Sbjct: 150 ATIYGFAVALGLLQQKL 166 >gi|224087817|ref|XP_002194923.1| PREDICTED: similar to NADH-ubiquinone oxidoreductase Fe-S protein 7 [Taeniopygia guttata] Length = 183 Score = 158 bits (401), Expect = 3e-37, Method: Composition-based stats. Identities = 77/174 (44%), Positives = 96/174 (55%), Gaps = 40/174 (22%) Query: 12 SGQSSCSLEKVDADFSRISSEITHKG-FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMM 70 + SS ++K A R S + +G +++ +D LV WAR SL MTFGLACCAVEMM Sbjct: 44 AADSSVQVQKSSAVVPRKSYVPSSRGEYVIAKLDDLVNWARRSSLWPMTFGLACCAVEMM 103 Query: 71 QASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCA 130 + PRYD++RFG RASPRQ+DVMIVAGTLTNKMA ALR +P Sbjct: 104 HMAAPRYDMDRFGVVFRASPRQADVMIVAGTLTNKMAPALR------KKPP--------- 148 Query: 131 NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 G CPPTAEAL+YGIL LQ+KI+R ++ Sbjct: 149 CRG------------------------RCPPTAEALLYGILQLQRKIKREKRMQ 178 >gi|148699634|gb|EDL31581.1| NADH dehydrogenase (ubiquinone) Fe-S protein 7, isoform CRA_c [Mus musculus] Length = 167 Score = 158 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 80/92 (86%), Positives = 87/92 (94%) Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 +DVMIVAGTLTNKMA ALR+VYDQMPEPRYV+SMGSCANGGGYYHYSYSVVRGCDRIVPV Sbjct: 71 ADVMIVAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPV 130 Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 DIYVPGCPPTAEAL+YGIL LQ+KI+R +K Sbjct: 131 DIYVPGCPPTAEALLYGILQLQRKIKREQKLK 162 >gi|237729674|ref|ZP_04560155.1| hydrogenase activity [Citrobacter sp. 30_2] gi|226908280|gb|EEH94198.1| hydrogenase activity [Citrobacter sp. 30_2] Length = 255 Score = 158 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 52/150 (34%), Positives = 77/150 (51%), Gaps = 5/150 (3%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPR 91 + L + R+ + + G C +E+ P +D ERFG SPR Sbjct: 18 TVDESIASMKASLLKSIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPR 77 Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151 +D+++ G +T M S R + P+P+ IS G+C N GG +H Y V G D+IVP Sbjct: 78 HADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVP 137 Query: 152 VDIYVPGCPPTAEALIYGILL----LQKKI 177 VD+Y+PGCPPT A +YG + L++KI Sbjct: 138 VDVYIPGCPPTPAATLYGFAMALGLLEQKI 167 >gi|289549193|ref|YP_003474181.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Thermocrinis albus DSM 14484] gi|289182810|gb|ADC90054.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Thermocrinis albus DSM 14484] Length = 163 Score = 158 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 46/157 (29%), Positives = 81/157 (51%), Gaps = 1/157 (0%) Query: 26 FSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGF 84 F + + + ++ + + + ++ + + G C VE+ P Y +E FG Sbjct: 4 FFKKVLKRKRRELVLKNAEGIAGLGKSLYVRHVDSGSCNACEVEVAALGNPHYSIESFGI 63 Query: 85 APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR 144 ASP+ +DV++V G +T M +AL++ YD P P++VI++G C ++ SYSV Sbjct: 64 RFVASPKHADVLLVTGCVTRNMLTALKKAYDNTPSPKWVITVGDCTESCPFFKDSYSVEG 123 Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181 + +PV ++VPGCPP +I G + L I+R Sbjct: 124 PVSKHIPVHLHVPGCPPEPSEIISGFIRLMNLIQREK 160 >gi|297720477|ref|NP_001172600.1| Os01g0791600 [Oryza sativa Japonica Group] gi|255673769|dbj|BAH91330.1| Os01g0791600 [Oryza sativa Japonica Group] Length = 379 Score = 158 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 54/101 (53%), Positives = 77/101 (76%), Gaps = 1/101 (0%) Query: 74 MPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGG 133 R+D +R+G PR+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C G Sbjct: 150 GSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITG 209 Query: 134 GYYH-YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLL 173 G + SYS VRG D+++PVD+Y+PGCPP EA+I + L Sbjct: 210 GMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEAVIDALTKL 250 >gi|325294933|ref|YP_004281447.1| NADH dehydrogenase (quinone) [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065381|gb|ADY73388.1| NADH dehydrogenase (quinone) [Desulfurobacterium thermolithotrophum DSM 11699] Length = 182 Score = 158 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 49/135 (36%), Positives = 79/135 (58%), Gaps = 3/135 (2%) Query: 51 RTGSLMWMTF---GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMA 107 RT S + + C VE++ P+YD+ERFG R +P+QSD+++V G +T + Sbjct: 7 RTKSPWILHYNTGSCNGCDVEILACLAPKYDIERFGILNRGNPKQSDILLVTGPVTKRAR 66 Query: 108 SALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALI 167 L R+Y +MPEP+ V+++G CA GG + Y+V G D+ +PVD+YVPGC E +I Sbjct: 67 ERLIRLYMEMPEPKVVVAVGVCACTGGVFRGMYNVENGVDKFIPVDVYVPGCAARPENII 126 Query: 168 YGILLLQKKIRRVGN 182 G++ + + + Sbjct: 127 DGVVRALEILEKKKK 141 >gi|311278313|ref|YP_003940544.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Enterobacter cloacae SCF1] gi|308747508|gb|ADO47260.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Enterobacter cloacae SCF1] Length = 255 Score = 158 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 52/150 (34%), Positives = 76/150 (50%), Gaps = 5/150 (3%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPR 91 + L R+ + + G C +E+ P +D ERFG SPR Sbjct: 18 TVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPR 77 Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151 +D+++ G +T M S R + P+P+ IS G+C N GG +H Y V G D+IVP Sbjct: 78 HADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVP 137 Query: 152 VDIYVPGCPPTAEALIYGILL----LQKKI 177 VD+Y+PGCPPT A +YG + L++KI Sbjct: 138 VDVYIPGCPPTPAATLYGFAMALGLLEQKI 167 >gi|312880265|ref|ZP_07740065.1| Membrane bound hydrogenase subunit mbhJ [Aminomonas paucivorans DSM 12260] gi|310783556|gb|EFQ23954.1| Membrane bound hydrogenase subunit mbhJ [Aminomonas paucivorans DSM 12260] Length = 153 Score = 158 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 46/132 (34%), Positives = 74/132 (56%), Gaps = 3/132 (2%) Query: 53 GSLMWMTF---GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASA 109 SL C +E++ PRYD+ER G SPR +D ++V G +T+ M Sbjct: 12 RSLWVFHCNSGSCNGCDIEIVATLTPRYDIERLGMKLVGSPRHADALLVTGPVTHYMVER 71 Query: 110 LRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYG 169 ++R++ Q+P+P+ VI +G+C G ++ SY++ DR++PVD+YV GCPP EA+I G Sbjct: 72 VKRIHAQIPDPKVVICVGNCGCSGDVFYKSYNLEGPVDRVLPVDVYVHGCPPRPEAMIDG 131 Query: 170 ILLLQKKIRRVG 181 + + R Sbjct: 132 VAQAVALLERRR 143 >gi|238788858|ref|ZP_04632649.1| Formate hydrogenlyase subunit 7 [Yersinia frederiksenii ATCC 33641] gi|238723163|gb|EEQ14812.1| Formate hydrogenlyase subunit 7 [Yersinia frederiksenii ATCC 33641] Length = 224 Score = 158 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 51/123 (41%), Positives = 73/123 (59%), Gaps = 4/123 (3%) Query: 60 FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119 G C +E+ A P +D ERFG ASPR +D+++ G +T M + R Y+ P+ Sbjct: 4 GGCNGCEIEIFAAITPLFDTERFGIKVVASPRHADILLFTGAVTRAMRTPALRAYESAPD 63 Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQK 175 P+ +S G+C GGG +H Y V G D IVP+D+Y+PGCPPT A IYG LL++ Sbjct: 64 PKICVSYGACGCGGGIFHDLYCVWGGSDTIVPIDVYIPGCPPTPAATIYGFAVALGLLEQ 123 Query: 176 KIR 178 K++ Sbjct: 124 KLK 126 >gi|262043973|ref|ZP_06017057.1| hydrogenase-4 component I [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259038699|gb|EEW39886.1| hydrogenase-4 component I [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 255 Score = 158 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 50/122 (40%), Positives = 70/122 (57%), Gaps = 4/122 (3%) Query: 60 FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119 G C +E+ P +D ERFG SPR +D+++ G +T M S R + P+ Sbjct: 46 GGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPD 105 Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILL----LQK 175 P+ IS G+C N GG +H Y V G D+IVPVD+Y+PGCPPT A +YG + L++ Sbjct: 106 PKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQ 165 Query: 176 KI 177 KI Sbjct: 166 KI 167 >gi|163785059|ref|ZP_02179780.1| hypothetical protein HG1285_04403 [Hydrogenivirga sp. 128-5-R1-1] gi|159879672|gb|EDP73455.1| hypothetical protein HG1285_04403 [Hydrogenivirga sp. 128-5-R1-1] Length = 171 Score = 158 bits (400), Expect = 4e-37, Method: Composition-based stats. Identities = 44/125 (35%), Positives = 73/125 (58%), Gaps = 1/125 (0%) Query: 52 TGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASAL 110 + ++ + G C E+ S P YD+ERFG ASP+ +D +++ G +T M A+ Sbjct: 43 SFAIREVDSGSCNACEYEISALSNPYYDVERFGIKFVASPKHADAIMITGCMTRNMYKAV 102 Query: 111 RRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGI 170 R Y+ +PEP++VI++G C GG + SY+ + G +PVD+++ GCPP +I G+ Sbjct: 103 LRAYENVPEPKFVIAVGDCVLDGGVFKGSYATIDGVQDKLPVDVWIKGCPPEPIDIISGV 162 Query: 171 LLLQK 175 L L + Sbjct: 163 LKLIE 167 >gi|21228424|ref|NP_634346.1| ech hydrogenase subunit [Methanosarcina mazei Go1] gi|20906901|gb|AAM32018.1| Ech Hydrogenase, Subunit [Methanosarcina mazei Go1] Length = 156 Score = 158 bits (399), Expect = 4e-37, Method: Composition-based stats. Identities = 46/123 (37%), Positives = 78/123 (63%), Gaps = 3/123 (2%) Query: 52 TGSLMWMTF---GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108 S + C +E++ P YD ERFG +P+Q+D+M+V G++ K + Sbjct: 4 AKSPWIIHVNCNSCNGCDIEVVACLTPLYDAERFGVLNIGTPKQADIMVVTGSVNYKNVN 63 Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168 L+ +Y+Q+P+P+ V+++G+CA+ GG +H Y+V+ G D+I+PVD YVPGC P EA++ Sbjct: 64 VLKNLYNQIPDPKVVLAVGACASTGGIFHNCYNVIGGVDQIIPVDAYVPGCCPRPEAILD 123 Query: 169 GIL 171 G++ Sbjct: 124 GVV 126 >gi|238755287|ref|ZP_04616631.1| Formate hydrogenlyase subunit 7 [Yersinia ruckeri ATCC 29473] gi|238706521|gb|EEP98894.1| Formate hydrogenlyase subunit 7 [Yersinia ruckeri ATCC 29473] Length = 265 Score = 158 bits (399), Expect = 4e-37, Method: Composition-based stats. Identities = 52/122 (42%), Positives = 70/122 (57%), Gaps = 4/122 (3%) Query: 60 FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119 G C +E+ A P +D ERFG SPR +D+++ G +T M R +D P+ Sbjct: 47 GGCNGCEIEIFAAISPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRIPALRAWDSAPD 106 Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILL----LQK 175 P+ IS G+C N GG +H Y V G D+IVPVD+Y+PGCPPT A IYG + L + Sbjct: 107 PKISISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATIYGFAMALGLLDQ 166 Query: 176 KI 177 KI Sbjct: 167 KI 168 >gi|41686|emb|CAA35552.1| hycG [Escherichia coli] gi|1093500|prf||2104213G hycG gene Length = 255 Score = 158 bits (399), Expect = 4e-37, Method: Composition-based stats. Identities = 53/154 (34%), Positives = 77/154 (50%), Gaps = 5/154 (3%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPR 91 + L R+ + + G C +E+ P +D ERFG SPR Sbjct: 18 TVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFGTLSPLFDAERFGIKVVPSPR 77 Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151 +D+++ G +T M S R + P+P+ IS G+C N GG +H Y V G D+IVP Sbjct: 78 HADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVP 137 Query: 152 VDIYVPGCPPTAEALIYGILL----LQKKIRRVG 181 VD+Y+PGCPPT A +YG + L++KI G Sbjct: 138 VDVYIPGCPPTPAATLYGFAMALGLLEQKIHARG 171 >gi|238749929|ref|ZP_04611433.1| Formate hydrogenlyase subunit 7 [Yersinia rohdei ATCC 43380] gi|238711858|gb|EEQ04072.1| Formate hydrogenlyase subunit 7 [Yersinia rohdei ATCC 43380] Length = 236 Score = 158 bits (399), Expect = 4e-37, Method: Composition-based stats. Identities = 51/138 (36%), Positives = 78/138 (56%), Gaps = 5/138 (3%) Query: 46 LVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTN 104 + R+ + + G C +E+ + P +D ERFG ASPR +D+++ G +T Sbjct: 1 MKDIKRSAYVYRVDCGGCNGCEIEIFSSITPVFDTERFGIKVVASPRHADILLFTGAVTR 60 Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164 M + R Y+ P+P+ +S G+C GGG +H Y V G D IVP+D+Y+PGCPPT Sbjct: 61 AMRTPALRAYESAPDPKICVSYGACGCGGGIFHDLYCVWGGSDTIVPIDVYIPGCPPTPA 120 Query: 165 ALIYGIL----LLQKKIR 178 A IYG LL++K++ Sbjct: 121 ATIYGFAVALGLLEQKLK 138 >gi|50120178|ref|YP_049345.1| hydrogenase-4 component I [Pectobacterium atrosepticum SCRI1043] gi|49610704|emb|CAG74149.1| hydrogenase-4 component I [Pectobacterium atrosepticum SCRI1043] Length = 259 Score = 158 bits (399), Expect = 4e-37, Method: Composition-based stats. Identities = 51/144 (35%), Positives = 80/144 (55%), Gaps = 5/144 (3%) Query: 46 LVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTN 104 L R+ + + G C +E+ A P +D ERFG ASPR +D+++ G +T Sbjct: 30 LKDIQRSAYVYRVDCGGCNGCEIEIFAAITPLFDAERFGIKVVASPRHADILLFTGAVTR 89 Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164 M R Y+ P+P+ IS G+C GGG +H Y V G + IVP+D+++PGCPPT Sbjct: 90 AMRVPALRAYESAPDPKICISYGACGCGGGIFHDLYCVWGGSESIVPIDVWIPGCPPTPA 149 Query: 165 ALIYGIL----LLQKKIRRVGNVK 184 A I+G LL++K++ +++ Sbjct: 150 ATIHGFAVALGLLEQKLKGQDHIQ 173 >gi|293392055|ref|ZP_06636389.1| hydrogenase-4 component I [Aggregatibacter actinomycetemcomitans D7S-1] gi|290952589|gb|EFE02708.1| hydrogenase-4 component I [Aggregatibacter actinomycetemcomitans D7S-1] Length = 258 Score = 158 bits (399), Expect = 5e-37, Method: Composition-based stats. Identities = 52/138 (37%), Positives = 76/138 (55%), Gaps = 5/138 (3%) Query: 46 LVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTN 104 L R+ + + G C +E+ P +D ERFG ASPR +D+++ G +T Sbjct: 30 LKNIQRSAYVYRVDCGGCNGCEIEIFSTITPTFDAERFGIKVVASPRHADILLFTGAVTR 89 Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164 M + R Y P+P+ IS G+C GGG +H Y V G D+IVP+D+Y+PGCPPT Sbjct: 90 AMRTPAIRAYQAAPDPKICISYGACGCGGGIFHDLYCVWGGSDQIVPIDVYIPGCPPTPA 149 Query: 165 ALIYGILL----LQKKIR 178 A IYG + L +K++ Sbjct: 150 ATIYGFAMALGLLDQKLK 167 >gi|261868405|ref|YP_003256327.1| hydrogenase-4 subunit I [Aggregatibacter actinomycetemcomitans D11S-1] gi|261413737|gb|ACX83108.1| hydrogenase-4 component I [Aggregatibacter actinomycetemcomitans D11S-1] Length = 258 Score = 158 bits (399), Expect = 5e-37, Method: Composition-based stats. Identities = 52/138 (37%), Positives = 76/138 (55%), Gaps = 5/138 (3%) Query: 46 LVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTN 104 L R+ + + G C +E+ P +D ERFG ASPR +D+++ G +T Sbjct: 30 LKNIQRSAYVYRVDCGGCNGCEIEIFSTITPTFDAERFGIKVVASPRHADILLFTGAVTR 89 Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164 M + R Y P+P+ IS G+C GGG +H Y V G D+IVP+D+Y+PGCPPT Sbjct: 90 AMRTPAMRAYQAAPDPKICISYGACGCGGGIFHDLYCVWGGSDQIVPIDVYIPGCPPTPA 149 Query: 165 ALIYGILL----LQKKIR 178 A IYG + L +K++ Sbjct: 150 ATIYGFAMALGLLDQKLK 167 >gi|197286367|ref|YP_002152239.1| hydrogenase-4 component I [Proteus mirabilis HI4320] gi|227357421|ref|ZP_03841775.1| hydrogenase-4 component I [Proteus mirabilis ATCC 29906] gi|194683854|emb|CAR44984.1| hydrogenase-4 component I [Proteus mirabilis HI4320] gi|227162379|gb|EEI47379.1| hydrogenase-4 component I [Proteus mirabilis ATCC 29906] Length = 260 Score = 157 bits (398), Expect = 5e-37, Method: Composition-based stats. Identities = 50/129 (38%), Positives = 74/129 (57%), Gaps = 4/129 (3%) Query: 60 FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119 G C +E+ A P +D ERFG ASPR +D+++ G +T +M R Y+ P+ Sbjct: 45 GGCNGCEIEIFSAITPVFDAERFGIKVVASPRHADILLFTGAVTRQMRVPALRAYESAPD 104 Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQK 175 P+ IS G+C GGG +H Y V G + IVP+D+++PGCPPT A IYG LL + Sbjct: 105 PKICISYGACGCGGGIFHDLYCVWGGSETIVPIDVWIPGCPPTPAATIYGFAVALGLLDQ 164 Query: 176 KIRRVGNVK 184 K++ + + Sbjct: 165 KLKGQNHTE 173 >gi|333001926|gb|EGK21492.1| hydrogenase-4 component I [Shigella flexneri K-218] Length = 252 Score = 157 bits (398), Expect = 6e-37, Method: Composition-based stats. Identities = 51/122 (41%), Positives = 72/122 (59%), Gaps = 4/122 (3%) Query: 60 FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119 G C +E+ A P +D ERFG +SPR +D+++ GT+T M R Y+ P+ Sbjct: 42 GGCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGTVTRAMRMPALRAYESAPD 101 Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQK 175 + +S G+C GGG +H YSV G D IVP+D+++PGCPPT A I+G LLQ+ Sbjct: 102 HKICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHGFAVALGLLQQ 161 Query: 176 KI 177 KI Sbjct: 162 KI 163 >gi|213610076|ref|ZP_03369902.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 175 Score = 157 bits (398), Expect = 6e-37, Method: Composition-based stats. Identities = 52/150 (34%), Positives = 76/150 (50%), Gaps = 5/150 (3%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPR 91 + L R+ + + G C +E+ P +D ERFG SPR Sbjct: 18 TVDESIASMKASLLKNIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPR 77 Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151 +D+++ G +T M S R + P+P+ IS G+C N GG +H Y V G D+IVP Sbjct: 78 HADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVP 137 Query: 152 VDIYVPGCPPTAEALIYGILL----LQKKI 177 VD+Y+PGCPPT A +YG + L++KI Sbjct: 138 VDVYIPGCPPTPAATLYGFAMALGLLEQKI 167 >gi|57233683|ref|YP_182267.1| hydrogenase, group 4, HycG subunit, putative [Dehalococcoides ethenogenes 195] gi|57224131|gb|AAW39188.1| hydrogenase, group 4, HycG subunit, putative [Dehalococcoides ethenogenes 195] Length = 171 Score = 157 bits (397), Expect = 6e-37, Method: Composition-based stats. Identities = 57/178 (32%), Positives = 94/178 (52%), Gaps = 9/178 (5%) Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62 + V I + + K DADF ++ GF + + V + R+ ++ + G Sbjct: 1 MKNVLNNIFKPKVCRQMPKGDADFDKL-------GFALKTEIHAV-FGRSLAIRALDSGS 52 Query: 63 -ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPR 121 +E+ S P YD+ERFG + ASPR +D++IV G ++ MA A+R+ +D MP P+ Sbjct: 53 DNSAEIELNNLSNPYYDIERFGLSFVASPRHADILIVTGAVSQNMAIAVRKTFDAMPSPK 112 Query: 122 YVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179 VI++G A G Y V+ G D+I+PVD+ +PG PP +I +L L + + + Sbjct: 113 LVIALGDDACGSSIVCGGYGVLGGVDKILPVDLKIPGNPPEPIQIITALLGLMRSLGK 170 >gi|213583852|ref|ZP_03365678.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 174 Score = 157 bits (397), Expect = 7e-37, Method: Composition-based stats. Identities = 52/150 (34%), Positives = 76/150 (50%), Gaps = 5/150 (3%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPR 91 + L R+ + + G C +E+ P +D ERFG SPR Sbjct: 18 TVDESIASMKASLLKNIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPR 77 Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151 +D+++ G +T M S R + P+P+ IS G+C N GG +H Y V G D+IVP Sbjct: 78 HADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVP 137 Query: 152 VDIYVPGCPPTAEALIYGILL----LQKKI 177 VD+Y+PGCPPT A +YG + L++KI Sbjct: 138 VDVYIPGCPPTPAATLYGFAMALGLLEQKI 167 >gi|146312833|ref|YP_001177907.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Enterobacter sp. 638] gi|145319709|gb|ABP61856.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Enterobacter sp. 638] Length = 255 Score = 157 bits (397), Expect = 7e-37, Method: Composition-based stats. Identities = 52/150 (34%), Positives = 76/150 (50%), Gaps = 5/150 (3%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPR 91 + L R+ + + G C +E+ P +D ERFG SPR Sbjct: 18 TVDESIANMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPR 77 Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151 +D+++ G +T M S R + P+P+ IS G+C N GG +H Y V G D+IVP Sbjct: 78 HADILLFTGAMTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVP 137 Query: 152 VDIYVPGCPPTAEALIYGILL----LQKKI 177 VD+Y+PGCPPT A +YG + L++KI Sbjct: 138 VDVYIPGCPPTPAATLYGFAMALGLLEQKI 167 >gi|154150665|ref|YP_001404283.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Candidatus Methanoregula boonei 6A8] gi|153999217|gb|ABS55640.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Methanoregula boonei 6A8] Length = 172 Score = 157 bits (397), Expect = 7e-37, Method: Composition-based stats. Identities = 54/167 (32%), Positives = 89/167 (53%), Gaps = 9/167 (5%) Query: 10 IISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL-ACCAVE 68 ++ + + L D + RI EI + + R+ ++ + G +E Sbjct: 8 MLGKKVTGPLPVRDEELERIGREIRR--------EINARFGRSLAIRELDAGSDNAAEIE 59 Query: 69 MMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGS 128 + S YD+ERFG + ASPR +DV++V G +T MA A ++ YD MP P++V+++G Sbjct: 60 INNLSNAYYDVERFGISFVASPRHADVLLVTGAITCNMAIAAQKTYDAMPSPKFVVAVGD 119 Query: 129 CANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175 A GG Y +Y+V+ G D I PVD+ +PG PP ++ G+L L + Sbjct: 120 DACDGGIYKGTYAVLGGADAIFPVDLKIPGNPPAPIQILTGLLALMR 166 >gi|327252139|gb|EGE63811.1| hydrogenase-4 component I [Escherichia coli STEC_7v] Length = 249 Score = 157 bits (397), Expect = 7e-37, Method: Composition-based stats. Identities = 50/122 (40%), Positives = 71/122 (58%), Gaps = 4/122 (3%) Query: 60 FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119 G C +E+ A P +D ERFG +SPR +D+++ G +T M R Y+ P+ Sbjct: 39 GGCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMRMPALRAYESAPD 98 Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQK 175 + +S G+C GGG +H YSV G D IVP+D+++PGCPPT A I+G LLQ+ Sbjct: 99 HKICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHGFAVALGLLQQ 158 Query: 176 KI 177 KI Sbjct: 159 KI 160 >gi|323170245|gb|EFZ55898.1| hydrogenase-4 component I [Escherichia coli LT-68] Length = 249 Score = 157 bits (397), Expect = 8e-37, Method: Composition-based stats. Identities = 50/122 (40%), Positives = 71/122 (58%), Gaps = 4/122 (3%) Query: 60 FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119 G C +E+ A P +D ERFG +SPR +D+++ G +T M R Y+ P+ Sbjct: 39 GGCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMRMPALRAYESAPD 98 Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQK 175 + +S G+C GGG +H YSV G D IVP+D+++PGCPPT A I+G LLQ+ Sbjct: 99 HKICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHGFAVALGLLQQ 158 Query: 176 KI 177 KI Sbjct: 159 KI 160 >gi|238799239|ref|ZP_04642686.1| Formate hydrogenlyase subunit 7 [Yersinia mollaretii ATCC 43969] gi|238716904|gb|EEQ08773.1| Formate hydrogenlyase subunit 7 [Yersinia mollaretii ATCC 43969] Length = 250 Score = 157 bits (396), Expect = 8e-37, Method: Composition-based stats. Identities = 53/138 (38%), Positives = 78/138 (56%), Gaps = 5/138 (3%) Query: 46 LVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTN 104 L R+ + + G C +E+ + P +D ERFG ASPR +D+++ G +T Sbjct: 15 LKDIKRSAYVYRVDCGGCNGCEIEIFSSITPLFDTERFGIKVVASPRHADILLFTGAVTR 74 Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164 M S R Y+ P+P+ +S G+C GGG +H Y V G D IVP+D+Y+PGCPPT Sbjct: 75 AMRSPALRAYESAPDPKICVSYGACGCGGGIFHDLYCVWGGSDTIVPIDVYIPGCPPTPA 134 Query: 165 ALIYGIL----LLQKKIR 178 A IYG LL++K++ Sbjct: 135 ATIYGFAVALGLLEQKLK 152 >gi|312973273|ref|ZP_07787445.1| hydrogenase-4 component I [Escherichia coli 1827-70] gi|310331868|gb|EFP99103.1| hydrogenase-4 component I [Escherichia coli 1827-70] Length = 249 Score = 157 bits (396), Expect = 8e-37, Method: Composition-based stats. Identities = 50/122 (40%), Positives = 71/122 (58%), Gaps = 4/122 (3%) Query: 60 FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119 G C +E+ A P +D ERFG +SPR +D+++ G +T M R Y+ P+ Sbjct: 39 GGCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMRMPALRAYESAPD 98 Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQK 175 + +S G+C GGG +H YSV G D IVP+D+++PGCPPT A I+G LLQ+ Sbjct: 99 HKICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHGFAVALGLLQQ 158 Query: 176 KI 177 KI Sbjct: 159 KI 160 >gi|323977333|gb|EGB72419.1| NADH ubiquinone oxidoreductase [Escherichia coli TW10509] Length = 252 Score = 157 bits (396), Expect = 8e-37, Method: Composition-based stats. Identities = 50/122 (40%), Positives = 71/122 (58%), Gaps = 4/122 (3%) Query: 60 FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119 G C +E+ A P +D ERFG +SPR +D+++ G +T M R Y+ P+ Sbjct: 42 GGCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMRMPALRAYESAPD 101 Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQK 175 + +S G+C GGG +H YSV G D IVP+D+++PGCPPT A I+G LLQ+ Sbjct: 102 HKICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHGFAVALGLLQQ 161 Query: 176 KI 177 KI Sbjct: 162 KI 163 >gi|332755132|gb|EGJ85497.1| hydrogenase-4 component I [Shigella flexneri 4343-70] Length = 231 Score = 157 bits (396), Expect = 9e-37, Method: Composition-based stats. Identities = 51/122 (41%), Positives = 72/122 (59%), Gaps = 4/122 (3%) Query: 60 FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119 G C +E+ A P +D ERFG +SPR +D+++ GT+T M R Y+ P+ Sbjct: 21 GGCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGTVTRAMRMPALRAYESAPD 80 Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQK 175 + +S G+C GGG +H YSV G D IVP+D+++PGCPPT A I+G LLQ+ Sbjct: 81 HKICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHGFAVALGLLQQ 140 Query: 176 KI 177 KI Sbjct: 141 KI 142 >gi|150401363|ref|YP_001325129.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanococcus aeolicus Nankai-3] gi|150014066|gb|ABR56517.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanococcus aeolicus Nankai-3] Length = 246 Score = 157 bits (396), Expect = 9e-37, Method: Composition-based stats. Identities = 46/116 (39%), Positives = 68/116 (58%) Query: 60 FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119 G C ++ + P YDL RFG ASPR +D +++ G +T M AL + YD P Sbjct: 131 GGCNACDADINVLNTPVYDLSRFGIKFVASPRHADGLVITGPVTKNMELALMKTYDATPS 190 Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175 P++VI++G+CA GG + + VV G D+I+PVD+Y+PGCPP +Y + K Sbjct: 191 PKFVIAVGTCAISGGIFRENEEVVGGVDKILPVDLYIPGCPPHPFTNLYAFVKFFK 246 >gi|315615732|gb|EFU96364.1| hydrogenase-4 component I [Escherichia coli 3431] Length = 249 Score = 157 bits (396), Expect = 9e-37, Method: Composition-based stats. Identities = 50/122 (40%), Positives = 71/122 (58%), Gaps = 4/122 (3%) Query: 60 FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119 G C +E+ A P +D ERFG +SPR +D+++ G +T M R Y+ P+ Sbjct: 39 GGCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMRMPALRAYESAPD 98 Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQK 175 + +S G+C GGG +H YSV G D IVP+D+++PGCPPT A I+G LLQ+ Sbjct: 99 HKICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHGFAVALGLLQQ 158 Query: 176 KI 177 KI Sbjct: 159 KI 160 >gi|238784034|ref|ZP_04628049.1| Formate hydrogenlyase subunit 7 [Yersinia bercovieri ATCC 43970] gi|238715011|gb|EEQ07008.1| Formate hydrogenlyase subunit 7 [Yersinia bercovieri ATCC 43970] Length = 237 Score = 157 bits (396), Expect = 9e-37, Method: Composition-based stats. Identities = 53/138 (38%), Positives = 77/138 (55%), Gaps = 5/138 (3%) Query: 46 LVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTN 104 L R+ + + G C +E+ + P +D ERFG ASPR +D+++ G +T Sbjct: 2 LKDIKRSAYVYRVDCGGCNGCEIEIFSSITPLFDTERFGIKVVASPRHADILLFTGAVTR 61 Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164 M S R Y P+P+ IS G+C GGG +H Y V G D IVP+D+Y+PGCPPT Sbjct: 62 AMRSPALRAYQSAPDPKICISYGACGCGGGIFHDLYCVWGGSDTIVPIDVYIPGCPPTPA 121 Query: 165 ALIYGIL----LLQKKIR 178 A +YG LL++K++ Sbjct: 122 ATLYGFAVALGLLEQKLK 139 >gi|218705988|ref|YP_002413507.1| hydrogenase 4, Fe-S subunit [Escherichia coli UMN026] gi|293405925|ref|ZP_06649917.1| hydrogenase-4 component I [Escherichia coli FVEC1412] gi|298381673|ref|ZP_06991272.1| hydrogenase-4 component I [Escherichia coli FVEC1302] gi|300897630|ref|ZP_07116035.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 198-1] gi|218433085|emb|CAR13980.1| hydrogenase 4, Fe-S subunit [Escherichia coli UMN026] gi|291428133|gb|EFF01160.1| hydrogenase-4 component I [Escherichia coli FVEC1412] gi|298279115|gb|EFI20629.1| hydrogenase-4 component I [Escherichia coli FVEC1302] gi|300358630|gb|EFJ74500.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 198-1] Length = 252 Score = 157 bits (396), Expect = 9e-37, Method: Composition-based stats. Identities = 50/122 (40%), Positives = 71/122 (58%), Gaps = 4/122 (3%) Query: 60 FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119 G C +E+ A P +D ERFG +SPR +D+++ G +T M R Y+ P+ Sbjct: 42 GGCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMRMPALRAYESAPD 101 Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQK 175 + +S G+C GGG +H YSV G D IVP+D+++PGCPPT A I+G LLQ+ Sbjct: 102 HKICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHGFAVALGLLQQ 161 Query: 176 KI 177 KI Sbjct: 162 KI 163 >gi|15832605|ref|NP_311378.1| hydrogenase 4 Fe-S subunit [Escherichia coli O157:H7 str. Sakai] gi|168748455|ref|ZP_02773477.1| hydrogenase-4, I subunit [Escherichia coli O157:H7 str. EC4113] gi|168756258|ref|ZP_02781265.1| hydrogenase-4, I subunit [Escherichia coli O157:H7 str. EC4401] gi|168761095|ref|ZP_02786102.1| hydrogenase-4, I subunit [Escherichia coli O157:H7 str. EC4501] gi|168768578|ref|ZP_02793585.1| hydrogenase-4, I subunit [Escherichia coli O157:H7 str. EC4486] gi|168773600|ref|ZP_02798607.1| hydrogenase-4, I subunit [Escherichia coli O157:H7 str. EC4196] gi|168778452|ref|ZP_02803459.1| hydrogenase-4, I subunit [Escherichia coli O157:H7 str. EC4076] gi|168787832|ref|ZP_02812839.1| hydrogenase-4, I subunit [Escherichia coli O157:H7 str. EC869] gi|168798857|ref|ZP_02823864.1| hydrogenase-4, I subunit [Escherichia coli O157:H7 str. EC508] gi|195936632|ref|ZP_03082014.1| hydrogenase 4 Fe-S subunit [Escherichia coli O157:H7 str. EC4024] gi|208809412|ref|ZP_03251749.1| hydrogenase-4, I subunit [Escherichia coli O157:H7 str. EC4206] gi|208811962|ref|ZP_03253291.1| hydrogenase-4, I subunit [Escherichia coli O157:H7 str. EC4045] gi|208821226|ref|ZP_03261546.1| hydrogenase-4, I subunit [Escherichia coli O157:H7 str. EC4042] gi|209398464|ref|YP_002271958.1| hydrogenase-4, I subunit [Escherichia coli O157:H7 str. EC4115] gi|217327671|ref|ZP_03443754.1| hydrogenase-4, I subunit [Escherichia coli O157:H7 str. TW14588] gi|254794434|ref|YP_003079271.1| hydrogenase 4, Fe-S subunit [Escherichia coli O157:H7 str. TW14359] gi|261223078|ref|ZP_05937359.1| hydrogenase 4, Fe-S subunit [Escherichia coli O157:H7 str. FRIK2000] gi|261259370|ref|ZP_05951903.1| hydrogenase 4, Fe-S subunit [Escherichia coli O157:H7 str. FRIK966] gi|13362821|dbj|BAB36774.1| hydrogenase 4 Fe-S subunit [Escherichia coli O157:H7 str. Sakai] gi|187770648|gb|EDU34492.1| hydrogenase-4, I subunit [Escherichia coli O157:H7 str. EC4196] gi|188017086|gb|EDU55208.1| hydrogenase-4, I subunit [Escherichia coli O157:H7 str. EC4113] gi|189003438|gb|EDU72424.1| hydrogenase-4, I subunit [Escherichia coli O157:H7 str. EC4076] gi|189356622|gb|EDU75041.1| hydrogenase-4, I subunit [Escherichia coli O157:H7 str. EC4401] gi|189362304|gb|EDU80723.1| hydrogenase-4, I subunit [Escherichia coli O157:H7 str. EC4486] gi|189368448|gb|EDU86864.1| hydrogenase-4, I subunit [Escherichia coli O157:H7 str. EC4501] gi|189372275|gb|EDU90691.1| hydrogenase-4, I subunit [Escherichia coli O157:H7 str. EC869] gi|189378584|gb|EDU97000.1| hydrogenase-4, I subunit [Escherichia coli O157:H7 str. EC508] gi|208729213|gb|EDZ78814.1| hydrogenase-4, I subunit [Escherichia coli O157:H7 str. EC4206] gi|208733239|gb|EDZ81926.1| hydrogenase-4, I subunit [Escherichia coli O157:H7 str. EC4045] gi|208741349|gb|EDZ89031.1| hydrogenase-4, I subunit [Escherichia coli O157:H7 str. EC4042] gi|209159864|gb|ACI37297.1| hydrogenase-4, I subunit [Escherichia coli O157:H7 str. EC4115] gi|209763620|gb|ACI80122.1| hydrogenase 4 Fe-S subunit [Escherichia coli] gi|209763622|gb|ACI80123.1| hydrogenase 4 Fe-S subunit [Escherichia coli] gi|209763626|gb|ACI80125.1| hydrogenase 4 Fe-S subunit [Escherichia coli] gi|217320038|gb|EEC28463.1| hydrogenase-4, I subunit [Escherichia coli O157:H7 str. TW14588] gi|254593834|gb|ACT73195.1| hydrogenase 4, Fe-S subunit [Escherichia coli O157:H7 str. TW14359] gi|320188821|gb|EFW63480.1| Hydrogenase-4 component I [Escherichia coli O157:H7 str. EC1212] gi|320640993|gb|EFX10477.1| hydrogenase 4, Fe-S subunit [Escherichia coli O157:H7 str. G5101] gi|326340284|gb|EGD64088.1| Hydrogenase-4 component I [Escherichia coli O157:H7 str. 1125] gi|326344969|gb|EGD68713.1| Hydrogenase-4 component I [Escherichia coli O157:H7 str. 1044] Length = 252 Score = 157 bits (396), Expect = 9e-37, Method: Composition-based stats. Identities = 50/122 (40%), Positives = 71/122 (58%), Gaps = 4/122 (3%) Query: 60 FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119 G C +E+ A P +D ERFG +SPR +D+++ G +T M R Y+ P+ Sbjct: 42 GGCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMRMPALRAYESAPD 101 Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQK 175 + +S G+C GGG +H YSV G D IVP+D+++PGCPPT A I+G LLQ+ Sbjct: 102 HKICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHGFAVALGLLQQ 161 Query: 176 KI 177 KI Sbjct: 162 KI 163 >gi|15803012|ref|NP_289042.1| hydrogenase 4 Fe-S subunit [Escherichia coli O157:H7 EDL933] gi|12516874|gb|AAG57599.1|AE005478_9 hydrogenase 4 Fe-S subunit [Escherichia coli O157:H7 str. EDL933] Length = 252 Score = 157 bits (396), Expect = 9e-37, Method: Composition-based stats. Identities = 50/122 (40%), Positives = 71/122 (58%), Gaps = 4/122 (3%) Query: 60 FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119 G C +E+ A P +D ERFG +SPR +D+++ G +T M R Y+ P+ Sbjct: 42 GGCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMRMPALRAYESAPD 101 Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQK 175 + +S G+C GGG +H YSV G D IVP+D+++PGCPPT A I+G LLQ+ Sbjct: 102 HKICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHGFAVALGLLQQ 161 Query: 176 KI 177 KI Sbjct: 162 KI 163 >gi|313650947|gb|EFS15347.1| hydrogenase-4 component I [Shigella flexneri 2a str. 2457T] gi|332766297|gb|EGJ96507.1| hydrogenase 3 and formate hydrogenlyase complex, HycG subunit [Shigella flexneri 2930-71] Length = 249 Score = 157 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 50/122 (40%), Positives = 71/122 (58%), Gaps = 4/122 (3%) Query: 60 FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119 G C +E+ A P +D ERFG +SPR +D+++ G +T M R Y+ P+ Sbjct: 39 GGCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMRMPALRAYESAPD 98 Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQK 175 + +S G+C GGG +H YSV G D IVP+D+++PGCPPT A I+G LLQ+ Sbjct: 99 HKICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHGFAVALGLLQQ 158 Query: 176 KI 177 KI Sbjct: 159 KI 160 >gi|323967933|gb|EGB63345.1| NADH ubiquinone oxidoreductase [Escherichia coli M863] Length = 252 Score = 157 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 50/122 (40%), Positives = 71/122 (58%), Gaps = 4/122 (3%) Query: 60 FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119 G C +E+ A P +D ERFG +SPR +D+++ G +T M R Y+ P+ Sbjct: 42 GGCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMRMPALRAYESAPD 101 Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQK 175 + +S G+C GGG +H YSV G D IVP+D+++PGCPPT A I+G LLQ+ Sbjct: 102 HKICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHGFAVALGLLQQ 161 Query: 176 KI 177 KI Sbjct: 162 KI 163 >gi|301024711|ref|ZP_07188354.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 69-1] gi|331664046|ref|ZP_08364956.1| hydrogenase-4 component I [Escherichia coli TA143] gi|331673944|ref|ZP_08374707.1| hydrogenase-4 component I [Escherichia coli TA280] gi|300396442|gb|EFJ79980.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 69-1] gi|331059845|gb|EGI31822.1| hydrogenase-4 component I [Escherichia coli TA143] gi|331069217|gb|EGI40609.1| hydrogenase-4 component I [Escherichia coli TA280] Length = 252 Score = 157 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 50/122 (40%), Positives = 71/122 (58%), Gaps = 4/122 (3%) Query: 60 FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119 G C +E+ A P +D ERFG +SPR +D+++ G +T M R Y+ P+ Sbjct: 42 GGCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMRMPALRAYESAPD 101 Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQK 175 + +S G+C GGG +H YSV G D IVP+D+++PGCPPT A I+G LLQ+ Sbjct: 102 HKICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHGFAVALGLLQQ 161 Query: 176 KI 177 KI Sbjct: 162 KI 163 >gi|191169211|ref|ZP_03030966.1| hydrogenase-4, I subunit [Escherichia coli B7A] gi|190900756|gb|EDV60550.1| hydrogenase-4, I subunit [Escherichia coli B7A] Length = 252 Score = 157 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 50/122 (40%), Positives = 71/122 (58%), Gaps = 4/122 (3%) Query: 60 FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119 G C +E+ A P +D ERFG +SPR +D+++ G +T M R Y+ P+ Sbjct: 42 GGCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMRMPALRAYESAPD 101 Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQK 175 + +S G+C GGG +H YSV G D IVP+D+++PGCPPT A I+G LLQ+ Sbjct: 102 HKICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHGFAVALGLLQQ 161 Query: 176 KI 177 KI Sbjct: 162 KI 163 >gi|209763618|gb|ACI80121.1| hydrogenase 4 Fe-S subunit [Escherichia coli] gi|320646275|gb|EFX15202.1| hydrogenase 4, Fe-S subunit [Escherichia coli O157:H- str. 493-89] gi|320651780|gb|EFX20160.1| hydrogenase 4, Fe-S subunit [Escherichia coli O157:H- str. H 2687] gi|320657166|gb|EFX24975.1| hydrogenase 4, Fe-S subunit [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320667576|gb|EFX34491.1| hydrogenase 4, Fe-S subunit [Escherichia coli O157:H7 str. LSU-61] Length = 252 Score = 157 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 50/122 (40%), Positives = 71/122 (58%), Gaps = 4/122 (3%) Query: 60 FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119 G C +E+ A P +D ERFG +SPR +D+++ G +T M R Y+ P+ Sbjct: 42 GGCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMRMPALRAYESAPD 101 Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQK 175 + +S G+C GGG +H YSV G D IVP+D+++PGCPPT A I+G LLQ+ Sbjct: 102 HKICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHGFAVALGLLQQ 161 Query: 176 KI 177 KI Sbjct: 162 KI 163 >gi|209919965|ref|YP_002294049.1| hydrogenase 4 Fe-S subunit [Escherichia coli SE11] gi|218555015|ref|YP_002387928.1| hydrogenase 4, Fe-S subunit [Escherichia coli IAI1] gi|218696116|ref|YP_002403783.1| hydrogenase 4, Fe-S subunit [Escherichia coli 55989] gi|309794467|ref|ZP_07688890.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 145-7] gi|209913224|dbj|BAG78298.1| hydrogenase 4 Fe-S subunit [Escherichia coli SE11] gi|218352848|emb|CAU98647.1| hydrogenase 4, Fe-S subunit [Escherichia coli 55989] gi|218361783|emb|CAQ99380.1| hydrogenase 4, Fe-S subunit [Escherichia coli IAI1] gi|308121923|gb|EFO59185.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 145-7] gi|320200049|gb|EFW74638.1| Hydrogenase-4 component I [Escherichia coli EC4100B] gi|324020088|gb|EGB89307.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 117-3] gi|324118167|gb|EGC12064.1| NADH ubiquinone oxidoreductase [Escherichia coli E1167] Length = 252 Score = 157 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 50/122 (40%), Positives = 71/122 (58%), Gaps = 4/122 (3%) Query: 60 FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119 G C +E+ A P +D ERFG +SPR +D+++ G +T M R Y+ P+ Sbjct: 42 GGCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMRMPALRAYESAPD 101 Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQK 175 + +S G+C GGG +H YSV G D IVP+D+++PGCPPT A I+G LLQ+ Sbjct: 102 HKICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHGFAVALGLLQQ 161 Query: 176 KI 177 KI Sbjct: 162 KI 163 >gi|170682690|ref|YP_001744672.1| hydrogenase-4, I subunit [Escherichia coli SMS-3-5] gi|218700947|ref|YP_002408576.1| hydrogenase 4, Fe-S subunit [Escherichia coli IAI39] gi|170520408|gb|ACB18586.1| hydrogenase-4, I subunit [Escherichia coli SMS-3-5] gi|218370933|emb|CAR18752.1| hydrogenase 4, Fe-S subunit [Escherichia coli IAI39] Length = 252 Score = 157 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 50/122 (40%), Positives = 71/122 (58%), Gaps = 4/122 (3%) Query: 60 FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119 G C +E+ A P +D ERFG +SPR +D+++ G +T M R Y+ P+ Sbjct: 42 GGCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMRMPALRAYESAPD 101 Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQK 175 + +S G+C GGG +H YSV G D IVP+D+++PGCPPT A I+G LLQ+ Sbjct: 102 HKICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHGFAVALGLLQQ 161 Query: 176 KI 177 KI Sbjct: 162 KI 163 >gi|323936381|gb|EGB32671.1| NADH ubiquinone oxidoreductase [Escherichia coli E1520] Length = 252 Score = 157 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 50/122 (40%), Positives = 71/122 (58%), Gaps = 4/122 (3%) Query: 60 FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119 G C +E+ A P +D ERFG +SPR +D+++ G +T M R Y+ P+ Sbjct: 42 GGCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMRMPALRAYESAPD 101 Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQK 175 + +S G+C GGG +H YSV G D IVP+D+++PGCPPT A I+G LLQ+ Sbjct: 102 HKICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHGFAVALGLLQQ 161 Query: 176 KI 177 KI Sbjct: 162 KI 163 >gi|291283709|ref|YP_003500527.1| Hydrogenase-4, I subunit [Escherichia coli O55:H7 str. CB9615] gi|209763624|gb|ACI80124.1| hydrogenase 4 Fe-S subunit [Escherichia coli] gi|290763582|gb|ADD57543.1| Hydrogenase-4, I subunit [Escherichia coli O55:H7 str. CB9615] gi|320662772|gb|EFX30104.1| hydrogenase 4, Fe-S subunit [Escherichia coli O55:H7 str. USDA 5905] Length = 252 Score = 157 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 50/122 (40%), Positives = 71/122 (58%), Gaps = 4/122 (3%) Query: 60 FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119 G C +E+ A P +D ERFG +SPR +D+++ G +T M R Y+ P+ Sbjct: 42 GGCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMRMPALRAYESAPD 101 Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQK 175 + +S G+C GGG +H YSV G D IVP+D+++PGCPPT A I+G LLQ+ Sbjct: 102 HKICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHGFAVALGLLQQ 161 Query: 176 KI 177 KI Sbjct: 162 KI 163 >gi|14521670|ref|NP_127146.1| hydrogenase-4 component i [Pyrococcus abyssi GE5] gi|5458889|emb|CAB50376.1| Hydrogenase 4, component I or formate hydrogen lyase, subunit 7 [Pyrococcus abyssi GE5] Length = 271 Score = 157 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 48/147 (32%), Positives = 80/147 (54%), Gaps = 18/147 (12%) Query: 53 GSLMWMT---FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASA 109 SL C +E++ P YDLER G +PR +D +++ G LT + A Sbjct: 5 KSLWVYHVDAGSCNGCDIEVLDVLTPYYDLERLGIKVVPNPRHADALLITGPLTRQTRMA 64 Query: 110 LRRVYDQM-PEPRYVISMGSCANGGGYYHYSYSVV-------------RGCDRIVPVDIY 155 +++ Y+ M P+PR V+++G+CA GG ++ SY++ G + +VPVD+Y Sbjct: 65 IKKAYEAMPPKPRIVVAIGTCACSGGIFYNSYALYNTSPERGRDRLRSGGIEMVVPVDMY 124 Query: 156 VPGCPPTAEALIYGILLLQK-KIRRVG 181 +PGCPP+ E ++YG+ L K +R+ Sbjct: 125 IPGCPPSPEEILYGLAQLLGIKEKRMK 151 >gi|88603006|ref|YP_503184.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Methanospirillum hungatei JF-1] gi|88188468|gb|ABD41465.1| ech hydrogenase subunit C [Methanospirillum hungatei JF-1] Length = 148 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 38/133 (28%), Positives = 70/133 (52%), Gaps = 3/133 (2%) Query: 53 GSLMWMTF---GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASA 109 S + + C +E++ P YD+ERFG +P+ +D+ ++ G + Sbjct: 6 KSPWIIHYDASSCNGCDIEVLACLTPLYDVERFGILNTGNPKHADIFVITGGVNEINKEV 65 Query: 110 LRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYG 169 + +Y+QMP P+ V+++G CA GG + Y++ G ++PVD+YVPGC E++I G Sbjct: 66 VLNIYEQMPHPKVVVAVGICACSGGVFRECYNISGGVATVIPVDVYVPGCAARPESIIDG 125 Query: 170 ILLLQKKIRRVGN 182 I+ + + + Sbjct: 126 IVQALGILEQKRS 138 >gi|293410884|ref|ZP_06654460.1| hydrogenase 4 [Escherichia coli B354] gi|284922436|emb|CBG35523.1| hydrogenase-4 component I [Escherichia coli 042] gi|291471352|gb|EFF13836.1| hydrogenase 4 [Escherichia coli B354] Length = 252 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 50/122 (40%), Positives = 71/122 (58%), Gaps = 4/122 (3%) Query: 60 FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119 G C +E+ A P +D ERFG +SPR +D+++ G +T M R Y+ P+ Sbjct: 42 GGCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMRMPALRAYESAPD 101 Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQK 175 + +S G+C GGG +H YSV G D IVP+D+++PGCPPT A I+G LLQ+ Sbjct: 102 HKICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHGFAVALGLLQQ 161 Query: 176 KI 177 KI Sbjct: 162 KI 163 >gi|157158565|ref|YP_001463811.1| hydrogenase-4, I subunit [Escherichia coli E24377A] gi|300922195|ref|ZP_07138331.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 182-1] gi|301329011|ref|ZP_07222038.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 78-1] gi|157080595|gb|ABV20303.1| hydrogenase-4, I subunit [Escherichia coli E24377A] gi|300421434|gb|EFK04745.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 182-1] gi|300844645|gb|EFK72405.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 78-1] Length = 252 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 50/122 (40%), Positives = 71/122 (58%), Gaps = 4/122 (3%) Query: 60 FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119 G C +E+ A P +D ERFG +SPR +D+++ G +T M R Y+ P+ Sbjct: 42 GGCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMRMPALRAYESAPD 101 Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQK 175 + +S G+C GGG +H YSV G D IVP+D+++PGCPPT A I+G LLQ+ Sbjct: 102 HKICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHGFAVALGLLQQ 161 Query: 176 KI 177 KI Sbjct: 162 KI 163 >gi|16130414|ref|NP_416984.1| hydrogenase 4, Fe-S subunit [Escherichia coli str. K-12 substr. MG1655] gi|82544938|ref|YP_408885.1| hydrogenase 4 Fe-S subunit [Shigella boydii Sb227] gi|89109295|ref|AP_003075.1| hydrogenase 4, Fe-S subunit [Escherichia coli str. K-12 substr. W3110] gi|170082099|ref|YP_001731419.1| hydrogenase 4, Fe-S subunit [Escherichia coli str. K-12 substr. DH10B] gi|193068356|ref|ZP_03049319.1| hydrogenase-4, I subunit [Escherichia coli E110019] gi|238901654|ref|YP_002927450.1| hydrogenase 4, Fe-S subunit [Escherichia coli BW2952] gi|300958884|ref|ZP_07170990.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 175-1] gi|301023874|ref|ZP_07187605.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 196-1] gi|301644479|ref|ZP_07244476.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 146-1] gi|307139123|ref|ZP_07498479.1| hydrogenase 4, Fe-S subunit [Escherichia coli H736] gi|331643106|ref|ZP_08344241.1| hydrogenase-4 component I [Escherichia coli H736] gi|331653914|ref|ZP_08354915.1| hydrogenase-4 component I [Escherichia coli M718] gi|2499332|sp|P77668|HYFI_ECOLI RecName: Full=Hydrogenase-4 component I gi|1788834|gb|AAC75542.1| hydrogenase 4, Fe-S subunit [Escherichia coli str. K-12 substr. MG1655] gi|2668498|gb|AAB88571.1| HyfI [Escherichia coli] gi|81246349|gb|ABB67057.1| hydrogenase 4 Fe-S subunit [Shigella boydii Sb227] gi|85675423|dbj|BAA16377.2| hydrogenase 4, Fe-S subunit [Escherichia coli str. K12 substr. W3110] gi|169889934|gb|ACB03641.1| hydrogenase 4, Fe-S subunit [Escherichia coli str. K-12 substr. DH10B] gi|192958308|gb|EDV88748.1| hydrogenase-4, I subunit [Escherichia coli E110019] gi|238861461|gb|ACR63459.1| hydrogenase 4, Fe-S subunit [Escherichia coli BW2952] gi|260448432|gb|ACX38854.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Escherichia coli DH1] gi|299880628|gb|EFI88839.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 196-1] gi|300314486|gb|EFJ64270.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 175-1] gi|301077224|gb|EFK92030.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 146-1] gi|315137112|dbj|BAJ44271.1| hydrogenase 4, Fe-S subunit [Escherichia coli DH1] gi|320185186|gb|EFW59966.1| Hydrogenase-4 component I [Shigella flexneri CDC 796-83] gi|323941252|gb|EGB37437.1| NADH ubiquinone oxidoreductase [Escherichia coli E482] gi|331039904|gb|EGI12124.1| hydrogenase-4 component I [Escherichia coli H736] gi|331048763|gb|EGI20839.1| hydrogenase-4 component I [Escherichia coli M718] gi|332344309|gb|AEE57643.1| hydrogenase-4, subunit I [Escherichia coli UMNK88] Length = 252 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 50/122 (40%), Positives = 71/122 (58%), Gaps = 4/122 (3%) Query: 60 FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119 G C +E+ A P +D ERFG +SPR +D+++ G +T M R Y+ P+ Sbjct: 42 GGCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMRMPALRAYESAPD 101 Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQK 175 + +S G+C GGG +H YSV G D IVP+D+++PGCPPT A I+G LLQ+ Sbjct: 102 HKICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHGFAVALGLLQQ 161 Query: 176 KI 177 KI Sbjct: 162 KI 163 >gi|293415752|ref|ZP_06658395.1| hydrogenase-4 component I [Escherichia coli B185] gi|291433400|gb|EFF06379.1| hydrogenase-4 component I [Escherichia coli B185] Length = 252 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 50/122 (40%), Positives = 71/122 (58%), Gaps = 4/122 (3%) Query: 60 FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119 G C +E+ A P +D ERFG +SPR +D+++ G +T M R Y+ P+ Sbjct: 42 GGCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMRMPALRAYESAPD 101 Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQK 175 + +S G+C GGG +H YSV G D IVP+D+++PGCPPT A I+G LLQ+ Sbjct: 102 HKICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHGFAVALGLLQQ 161 Query: 176 KI 177 KI Sbjct: 162 KI 163 >gi|332999462|gb|EGK19047.1| formate hydrogenlyase subunit 7 [Shigella flexneri VA-6] Length = 255 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 53/154 (34%), Positives = 76/154 (49%), Gaps = 5/154 (3%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPR 91 + L R+ + + G C +E+ P +D ERFG SPR Sbjct: 18 TVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPR 77 Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151 +D+++ G +T M S R + P+P+ IS G+C N GG H Y V G D+IVP Sbjct: 78 HADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGILHDLYCVWGGTDKIVP 137 Query: 152 VDIYVPGCPPTAEALIYGILL----LQKKIRRVG 181 VD+Y+PGCPPT A +YG + L++KI G Sbjct: 138 VDVYIPGCPPTPAATLYGFAMALGLLEQKIHARG 171 >gi|256021825|ref|ZP_05435690.1| hydrogenase 4, Fe-S subunit [Escherichia sp. 4_1_40B] Length = 252 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 50/122 (40%), Positives = 71/122 (58%), Gaps = 4/122 (3%) Query: 60 FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119 G C +E+ A P +D ERFG +SPR +D+++ G +T M R Y+ P+ Sbjct: 42 GGCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMRMPALRAYESAPD 101 Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQK 175 + +S G+C GGG +H YSV G D IVP+D+++PGCPPT A I+G LLQ+ Sbjct: 102 HKICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHGFAVALGLLQQ 161 Query: 176 KI 177 KI Sbjct: 162 KI 163 >gi|187732837|ref|YP_001881279.1| hydrogenase-4, I subunit [Shigella boydii CDC 3083-94] gi|187429829|gb|ACD09103.1| hydrogenase-4, I subunit [Shigella boydii CDC 3083-94] Length = 252 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 50/122 (40%), Positives = 71/122 (58%), Gaps = 4/122 (3%) Query: 60 FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119 G C +E+ A P +D ERFG +SPR +D+++ G +T M R Y+ P+ Sbjct: 42 GGCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMRMPALRAYESAPD 101 Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQK 175 + +S G+C GGG +H YSV G D IVP+D+++PGCPPT A I+G LLQ+ Sbjct: 102 HKICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHGFAVALGLLQQ 161 Query: 176 KI 177 KI Sbjct: 162 KI 163 >gi|295105899|emb|CBL03442.1| ech hydrogenase subunit C [Gordonibacter pamelaeae 7-10-1-b] Length = 147 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 45/140 (32%), Positives = 78/140 (55%), Gaps = 7/140 (5%) Query: 52 TGSLMWMTF---GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108 T S + + C +E++ A P YD+ERFG +P+ +D+ +V G++ + Sbjct: 5 TKSPWVIHYDGSSCNGCDIEVLAALCPGYDVERFGIINTGNPKHADIFLVTGSVNEQNIK 64 Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168 ++ +Y+QM EP+ VI+ G CA G +H Y+V+ G D+ +PVD+Y PGC EA+I Sbjct: 65 VVQEIYNQMVEPKVVIACGICACSAGIFHDCYNVIGGVDQAIPVDVYAPGCAVRPEAIID 124 Query: 169 GILL----LQKKIRRVGNVK 184 ++ L++K + + K Sbjct: 125 AVVQGLGILEEKSKALQAQK 144 >gi|88603078|ref|YP_503256.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Methanospirillum hungatei JF-1] gi|88188540|gb|ABD41537.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Methanospirillum hungatei JF-1] Length = 170 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 52/163 (31%), Positives = 87/163 (53%), Gaps = 4/163 (2%) Query: 21 KVDADFSRISSE--ITHKGFLVTSVDQLVTWARTGSLMWMTFGL-ACCAVEMMQASMPRY 77 K D + + G ++ + V + + ++ + G +E+ S P Y Sbjct: 9 KKPKDLQAYTPDSAFESAGVMLKAEIDRV-FGHSIAIREVDCGSDNAAEIELANLSAPHY 67 Query: 78 DLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137 D+ERFG ASPR +D++ V G +T+ M AL + Y+ PEP++VI++G A GG Y Sbjct: 68 DVERFGITFVASPRHADILAVTGVVTHGMKEALIKTYEATPEPKFVIAVGDDACTGGMYI 127 Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 +Y+VV D ++PVD+ +PG PPT A++ G+L L ++ Sbjct: 128 GTYAVVGPVDAVIPVDLKIPGNPPTPAAILEGLLTLMNVAKKR 170 >gi|24113818|ref|NP_708328.1| hydrogenase 4 Fe-S subunit [Shigella flexneri 2a str. 301] gi|30063865|ref|NP_838036.1| hydrogenase 4 Fe-S subunit [Shigella flexneri 2a str. 2457T] gi|110806420|ref|YP_689940.1| hydrogenase 4 Fe-S subunit [Shigella flexneri 5 str. 8401] gi|24052905|gb|AAN44035.1| hydrogenase 4 Fe-S subunit [Shigella flexneri 2a str. 301] gi|30042120|gb|AAP17846.1| hydrogenase 4 Fe-S subunit [Shigella flexneri 2a str. 2457T] gi|110615968|gb|ABF04635.1| hydrogenase 4 Fe-S subunit [Shigella flexneri 5 str. 8401] gi|281601892|gb|ADA74876.1| Hydrogenase 4 Fe-S subunit [Shigella flexneri 2002017] gi|332755532|gb|EGJ85896.1| hydrogenase-4 component I [Shigella flexneri K-671] gi|332756429|gb|EGJ86780.1| hydrogenase-4 component I [Shigella flexneri 2747-71] gi|333001624|gb|EGK21192.1| hydrogenase-4 component I [Shigella flexneri VA-6] gi|333002278|gb|EGK21842.1| hydrogenase-4 component I [Shigella flexneri K-272] gi|333016099|gb|EGK35431.1| hydrogenase-4 component I [Shigella flexneri K-227] gi|333016345|gb|EGK35676.1| hydrogenase-4 component I [Shigella flexneri K-304] Length = 252 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 50/122 (40%), Positives = 71/122 (58%), Gaps = 4/122 (3%) Query: 60 FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119 G C +E+ A P +D ERFG +SPR +D+++ G +T M R Y+ P+ Sbjct: 42 GGCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMRMPALRAYESAPD 101 Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQK 175 + +S G+C GGG +H YSV G D IVP+D+++PGCPPT A I+G LLQ+ Sbjct: 102 HKICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHGFAVALGLLQQ 161 Query: 176 KI 177 KI Sbjct: 162 KI 163 >gi|323169072|gb|EFZ54749.1| hydrogenase-4 component I [Shigella sonnei 53G] Length = 249 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 50/122 (40%), Positives = 71/122 (58%), Gaps = 4/122 (3%) Query: 60 FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119 G C +E+ A P +D ERFG +SPR +D+++ G +T M R Y+ P+ Sbjct: 39 GGCNACEIEIFAAITPVFDAERFGIKVISSPRHADILLFTGAVTRAMRMPALRAYESAPD 98 Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQK 175 + +S G+C GGG +H YSV G D IVP+D+++PGCPPT A I+G LLQ+ Sbjct: 99 HKICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHGFAVALGLLQQ 158 Query: 176 KI 177 KI Sbjct: 159 KI 160 >gi|238757224|ref|ZP_04618411.1| Formate hydrogenlyase subunit 7 [Yersinia aldovae ATCC 35236] gi|238704602|gb|EEP97132.1| Formate hydrogenlyase subunit 7 [Yersinia aldovae ATCC 35236] Length = 224 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 50/123 (40%), Positives = 73/123 (59%), Gaps = 4/123 (3%) Query: 60 FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119 G C +E+ + P +D ERFG ASPR +D+++ G +T M + R Y+ P+ Sbjct: 4 GGCNGCEIEIFSSITPVFDTERFGIKVVASPRHADILLFTGAVTRAMRTPALRAYESAPD 63 Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQK 175 P+ +S G+C GGG +H Y V G D IVP+D+Y+PGCPPT A IYG LL++ Sbjct: 64 PKICVSYGACGCGGGIFHDLYCVWGGSDTIVPIDVYIPGCPPTPAATIYGFAVALGLLEQ 123 Query: 176 KIR 178 K++ Sbjct: 124 KLK 126 >gi|319790466|ref|YP_004152099.1| NADH-quinone oxidoreductase, B subunit [Thermovibrio ammonificans HB-1] gi|317114968|gb|ADU97458.1| NADH-quinone oxidoreductase, B subunit [Thermovibrio ammonificans HB-1] Length = 156 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 59/135 (43%), Positives = 81/135 (60%) Query: 45 QLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTN 104 + W+R S + F CC++E++ PR+D ER+GF SPRQ+D +IV G ++ Sbjct: 4 KFFDWSRANSPWGVHFCSGCCSLEVLALMGPRFDWERYGFMMTPSPRQADFIIVTGLVSR 63 Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164 K+ L RVY QMPEPRYV MG+CA GGG Y S V + +P D++V GCPP E Sbjct: 64 KVLPVLLRVYQQMPEPRYVFGMGACAAGGGPYWDSDFVAVDVSQYIPFDVFVAGCPPNPE 123 Query: 165 ALIYGILLLQKKIRR 179 A + G L L++ I R Sbjct: 124 ATLEGFLRLKEIILR 138 >gi|78223793|ref|YP_385540.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Geobacter metallireducens GS-15] gi|78195048|gb|ABB32815.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Geobacter metallireducens GS-15] Length = 244 Score = 156 bits (394), Expect = 1e-36, Method: Composition-based stats. Identities = 49/131 (37%), Positives = 73/131 (55%), Gaps = 1/131 (0%) Query: 49 WARTGSLMWMT-FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMA 107 + R+ ++ G C + S +DL RFG ASPR +D + V G +T MA Sbjct: 113 FGRSLKFREVSAGGCNACEADTNVLSTIGWDLGRFGIQFVASPRHADGLWVTGPVTEHMA 172 Query: 108 SALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALI 167 AL Y+ +P+P+ V++ G+CA GG Y + V G D IVPVD+Y+PGCPP ++ Sbjct: 173 KALLTTYEAIPDPKIVVACGACAINGGPYIDTPQVCNGVDSIVPVDLYIPGCPPHPATIL 232 Query: 168 YGILLLQKKIR 178 G+L + KI+ Sbjct: 233 DGLLRILNKIK 243 >gi|269215531|ref|ZP_06159385.1| NADH dehydrogenase I, B subunit [Slackia exigua ATCC 700122] gi|269131018|gb|EEZ62093.1| NADH dehydrogenase I, B subunit [Slackia exigua ATCC 700122] Length = 147 Score = 156 bits (394), Expect = 1e-36, Method: Composition-based stats. Identities = 41/124 (33%), Positives = 74/124 (59%), Gaps = 3/124 (2%) Query: 52 TGSLMWMTF---GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108 + S + + C +E++ + P YD ERFG +P+ +D+ +V G++ + Sbjct: 5 SKSPWVIHYDASSCNGCDIEVLASLTPLYDAERFGVINTGNPKHADIFLVTGSVNERNIK 64 Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168 ++ +YDQM +P+ V+++G CA GG +H Y+V+ G D+ +PVD+YVPGC + E +I Sbjct: 65 VIQEIYDQMVDPKVVVAVGICACSGGIFHDCYNVIGGVDQAIPVDVYVPGCAASPENIID 124 Query: 169 GILL 172 G++ Sbjct: 125 GVVR 128 >gi|300817746|ref|ZP_07097961.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 107-1] gi|300529734|gb|EFK50796.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 107-1] Length = 252 Score = 156 bits (394), Expect = 1e-36, Method: Composition-based stats. Identities = 50/122 (40%), Positives = 71/122 (58%), Gaps = 4/122 (3%) Query: 60 FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119 G C +E+ A P +D ERFG +SPR +D+++ G +T M R Y+ P+ Sbjct: 42 GGCNACEIEIFAAITPVFDAERFGIKVISSPRHADILLFTGAVTRAMRMPALRAYESAPD 101 Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQK 175 + +S G+C GGG +H YSV G D IVP+D+++PGCPPT A I+G LLQ+ Sbjct: 102 HKICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHGFAVALGLLQQ 161 Query: 176 KI 177 KI Sbjct: 162 KI 163 >gi|325288319|ref|YP_004264500.1| NADH dehydrogenase (quinone) [Syntrophobotulus glycolicus DSM 8271] gi|324963720|gb|ADY54499.1| NADH dehydrogenase (quinone) [Syntrophobotulus glycolicus DSM 8271] Length = 247 Score = 156 bits (394), Expect = 1e-36, Method: Composition-based stats. Identities = 52/147 (35%), Positives = 85/147 (57%), Gaps = 10/147 (6%) Query: 42 SVDQLVTWA-----RTG--SLMWMT---FGLACCAVEMMQASMPRYDLERFGFAPRASPR 91 S+D L+ A R+ S+ C EM + P YD++R GF ASPR Sbjct: 101 SLDSLLNQAAGKTLRSFQQSVHIRHLDAGSCNGCDWEMTTLTGPVYDIQRLGFDFVASPR 160 Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151 +DV++V G +T + A+++ + P P+ ++++G+CA GG SY+ G DR++P Sbjct: 161 HADVLMVTGPVTRNLRIAVQKTFQATPAPKLIVAVGTCACSGGICGKSYASAGGVDRVLP 220 Query: 152 VDIYVPGCPPTAEALIYGILLLQKKIR 178 VDIY+PGCPP +ALI G++ +++K+ Sbjct: 221 VDIYIPGCPPRPQALIQGLMKIREKLE 247 >gi|194432188|ref|ZP_03064477.1| hydrogenase-4, I subunit [Shigella dysenteriae 1012] gi|194419717|gb|EDX35797.1| hydrogenase-4, I subunit [Shigella dysenteriae 1012] gi|320180473|gb|EFW55404.1| Hydrogenase-4 component I [Shigella boydii ATCC 9905] gi|332089845|gb|EGI94946.1| hydrogenase-4 component I [Shigella dysenteriae 155-74] Length = 252 Score = 156 bits (394), Expect = 1e-36, Method: Composition-based stats. Identities = 50/122 (40%), Positives = 71/122 (58%), Gaps = 4/122 (3%) Query: 60 FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119 G C +E+ A P +D ERFG +SPR +D+++ G +T M R Y+ P+ Sbjct: 42 GGCNACEIEIFAAITPVFDAERFGIKVISSPRHADILLFTGAVTRAMRMPALRAYESAPD 101 Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQK 175 + +S G+C GGG +H YSV G D IVP+D+++PGCPPT A I+G LLQ+ Sbjct: 102 HKICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHGFAVALGLLQQ 161 Query: 176 KI 177 KI Sbjct: 162 KI 163 >gi|74313015|ref|YP_311434.1| hydrogenase 4 Fe-S subunit [Shigella sonnei Ss046] gi|157161949|ref|YP_001459267.1| hydrogenase-4, I subunit [Escherichia coli HS] gi|170019227|ref|YP_001724181.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Escherichia coli ATCC 8739] gi|194437593|ref|ZP_03069689.1| hydrogenase-4, I subunit [Escherichia coli 101-1] gi|253772619|ref|YP_003035450.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254162463|ref|YP_003045571.1| hydrogenase 4, Fe-S subunit [Escherichia coli B str. REL606] gi|297519669|ref|ZP_06938055.1| hydrogenase 4, Fe-S subunit [Escherichia coli OP50] gi|300930126|ref|ZP_07145548.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 187-1] gi|73856492|gb|AAZ89199.1| hydrogenase 4 Fe-S subunit [Shigella sonnei Ss046] gi|157067629|gb|ABV06884.1| hydrogenase-4, I subunit [Escherichia coli HS] gi|169754155|gb|ACA76854.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Escherichia coli ATCC 8739] gi|194423399|gb|EDX39390.1| hydrogenase-4, I subunit [Escherichia coli 101-1] gi|242378087|emb|CAQ32860.1| hydrogenase 4, small subunit, subunit of hydrogenase 4 [Escherichia coli BL21(DE3)] gi|253323663|gb|ACT28265.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253974364|gb|ACT40035.1| hydrogenase 4, Fe-S subunit [Escherichia coli B str. REL606] gi|253978531|gb|ACT44201.1| hydrogenase 4, Fe-S subunit [Escherichia coli BL21(DE3)] gi|300461970|gb|EFK25463.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 187-1] gi|323961283|gb|EGB56895.1| NADH ubiquinone oxidoreductase [Escherichia coli H489] gi|323970989|gb|EGB66238.1| NADH ubiquinone oxidoreductase [Escherichia coli TA007] Length = 252 Score = 156 bits (394), Expect = 1e-36, Method: Composition-based stats. Identities = 50/122 (40%), Positives = 71/122 (58%), Gaps = 4/122 (3%) Query: 60 FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119 G C +E+ A P +D ERFG +SPR +D+++ G +T M R Y+ P+ Sbjct: 42 GGCNACEIEIFAAITPVFDAERFGIKVISSPRHADILLFTGAVTRAMRMPALRAYESAPD 101 Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQK 175 + +S G+C GGG +H YSV G D IVP+D+++PGCPPT A I+G LLQ+ Sbjct: 102 HKICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHGFAVALGLLQQ 161 Query: 176 KI 177 KI Sbjct: 162 KI 163 >gi|212710435|ref|ZP_03318563.1| hypothetical protein PROVALCAL_01497 [Providencia alcalifaciens DSM 30120] gi|212686855|gb|EEB46383.1| hypothetical protein PROVALCAL_01497 [Providencia alcalifaciens DSM 30120] Length = 260 Score = 156 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 52/137 (37%), Positives = 76/137 (55%), Gaps = 5/137 (3%) Query: 46 LVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTN 104 L R+ + + G C +E+ A P +D ERFG ASPR +D+++ G +T Sbjct: 30 LKDIKRSAYVYRVDCGGCNGCEIEIFSAITPVFDAERFGIKVVASPRHADILLFTGAVTR 89 Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164 M R Y+ P+P+ IS G+C GGG +H Y V G + IVP+D+++PGCPPT Sbjct: 90 AMRMPALRAYESAPDPKICISYGACGCGGGIFHDLYCVWGGSEHIVPIDVWIPGCPPTPA 149 Query: 165 ALIYGIL----LLQKKI 177 A IYG LL++K+ Sbjct: 150 ATIYGFAVALGLLKQKL 166 >gi|291519870|emb|CBK75091.1| ech hydrogenase subunit C [Butyrivibrio fibrisolvens 16/4] Length = 147 Score = 156 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 40/123 (32%), Positives = 75/123 (60%), Gaps = 3/123 (2%) Query: 53 GSLMWMTF---GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASA 109 S + + C +E++ + P YD+ERFG +P +D+ ++ G + ++ + Sbjct: 6 KSPWLLHYDGSSCNGCDIEVLACTTPVYDVERFGVINTGNPMHADIFLITGGINSQNEAV 65 Query: 110 LRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYG 169 ++++Y+QMP+P+ VI++G+CA GG + Y++ G D ++PVDIYVPGC E++I G Sbjct: 66 VKQIYEQMPQPKVVIAVGTCACTGGIFKECYNIKGGADTVIPVDIYVPGCAARPESIIDG 125 Query: 170 ILL 172 ++ Sbjct: 126 VVK 128 >gi|90422453|ref|YP_530823.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Rhodopseudomonas palustris BisB18] gi|90104467|gb|ABD86504.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Rhodopseudomonas palustris BisB18] Length = 174 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 49/128 (38%), Positives = 74/128 (57%), Gaps = 3/128 (2%) Query: 39 LVTSVDQLVTW--ARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDV 95 L TS+ L R+ S+ + G C +E+ S YD+ERFG ASPR +DV Sbjct: 29 LATSLGDLARRRLGRSLSIREVDAGSCNGCELEIHALSNAYYDVERFGIRFVASPRHADV 88 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155 ++V G +T M AL+ Y+ P P++V+++G CA GG + SY+V G ++PVD++ Sbjct: 89 LLVTGPVTKNMRDALKATYEATPSPKWVVALGDCAKDGGCFAASYAVEGGVSAVIPVDLH 148 Query: 156 VPGCPPTA 163 +PGCPP Sbjct: 149 IPGCPPPP 156 >gi|300940269|ref|ZP_07154866.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 21-1] gi|300454910|gb|EFK18403.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 21-1] Length = 252 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 50/122 (40%), Positives = 71/122 (58%), Gaps = 4/122 (3%) Query: 60 FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119 G C +E+ A P +D ERFG +SPR +D+++ G +T M R Y+ P+ Sbjct: 42 GGCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMRMPALRAYESAPD 101 Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQK 175 + +S G+C GGG +H YSV G D IVP+D+++PGCPPT A I+G LLQ+ Sbjct: 102 HKICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPVATIHGFAVALGLLQQ 161 Query: 176 KI 177 KI Sbjct: 162 KI 163 >gi|14325377|dbj|BAB60281.1| NADH dehydrogenase I chain B [Thermoplasma volcanium GSS1] Length = 116 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 67/111 (60%), Positives = 81/111 (72%), Gaps = 1/111 (0%) Query: 69 MMQASMPRYDLERFGF-APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMG 127 MM D+ RFG R SPRQSD+MIV+GT+T KMA +RR+YD+MP P+YVI+ G Sbjct: 1 MMAIQASDMDISRFGSEIFRNSPRQSDLMIVSGTVTKKMAPRVRRIYDEMPYPKYVIAQG 60 Query: 128 SCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 C GG Y+ YSVV G D++VPVD+YVPGCPPT EAL GI+LLQKKIR Sbjct: 61 VCVIQGGPYNQGYSVVLGVDKVVPVDVYVPGCPPTPEALTNGIILLQKKIR 111 >gi|256810299|ref|YP_003127668.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanocaldococcus fervens AG86] gi|256793499|gb|ACV24168.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanocaldococcus fervens AG86] Length = 148 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 46/129 (35%), Positives = 78/129 (60%), Gaps = 4/129 (3%) Query: 51 RTGSLMWM---TFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMA 107 R S+ T G C +E++ PRYD+E++G +PR++DV++V G +T + A Sbjct: 7 RKRSIHVCVVNTGGCNGCDIEIVSCLAPRYDIEQYGIYVHNNPREADVLLVTGPVTLQWA 66 Query: 108 SALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALI 167 L+ +Y++ PEP+ V+++G+CA GG + + VV G D+++PVD +PGCPP +I Sbjct: 67 ERLKEIYEKTPEPKVVVAVGACALSGGIFKEGH-VVGGVDKVIPVDAKIPGCPPRPSEII 125 Query: 168 YGILLLQKK 176 +L + K Sbjct: 126 EAVLKVAPK 134 >gi|94468067|gb|ABF20066.1| Ech hydrogenase small subunit [Klebsiella pneumoniae] Length = 255 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 52/150 (34%), Positives = 75/150 (50%), Gaps = 5/150 (3%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPR 91 + L R+ + + G C +E+ P +D ERFG SPR Sbjct: 18 TVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPR 77 Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151 +D+++ G +T M S R + P+P+ IS G+C N GG H Y V G D+IVP Sbjct: 78 HADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGILHDLYCVWGGTDKIVP 137 Query: 152 VDIYVPGCPPTAEALIYGILL----LQKKI 177 VD+Y+PGCPPT A +YG + L++KI Sbjct: 138 VDVYIPGCPPTPAATLYGFAMALGLLEQKI 167 >gi|288818462|ref|YP_003432810.1| Ni-Fe hydrogenase small subunit/NADH ubiquinone oxidoreductase 20 kD subunit [Hydrogenobacter thermophilus TK-6] gi|288787862|dbj|BAI69609.1| Ni-Fe hydrogenase small subunit/NADH ubiquinone oxidoreductase 20 kD subunit [Hydrogenobacter thermophilus TK-6] gi|308752052|gb|ADO45535.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Hydrogenobacter thermophilus TK-6] Length = 155 Score = 155 bits (392), Expect = 2e-36, Method: Composition-based stats. Identities = 46/144 (31%), Positives = 76/144 (52%), Gaps = 3/144 (2%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWM---TFGLACCAVEMMQASMPRYDLERFGFAPRAS 89 + + F V + D V + SL T C +E+ + P YD+ERFG AS Sbjct: 4 LLKRSFRVKTEDLKVKHKKVISLFIREVDTGSCNACEIEVANLNNPYYDVERFGIKFVAS 63 Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149 P+ +DV+++ G +T M + + Y+ P P++V+++G C Y+ SY+V + Sbjct: 64 PKHADVLLITGCVTRNMLIPMIKAYENAPAPKFVLTVGDCTAECPYFKDSYAVEGPVSKH 123 Query: 150 VPVDIYVPGCPPTAEALIYGILLL 173 +PV ++VPGCPP +I G+L L Sbjct: 124 LPVHVHVPGCPPEPAQVIEGLLKL 147 >gi|332092719|gb|EGI97788.1| hydrogenase-4 component I [Shigella boydii 3594-74] Length = 227 Score = 155 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 50/122 (40%), Positives = 71/122 (58%), Gaps = 4/122 (3%) Query: 60 FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119 G C +E+ A P +D ERFG +SPR +D+++ G +T M R Y+ P+ Sbjct: 17 GGCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMRMPALRAYESAPD 76 Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQK 175 + +S G+C GGG +H YSV G D IVP+D+++PGCPPT A I+G LLQ+ Sbjct: 77 HKICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHGFAVALGLLQQ 136 Query: 176 KI 177 KI Sbjct: 137 KI 138 >gi|312113082|ref|YP_004010678.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Rhodomicrobium vannielii ATCC 17100] gi|311218211|gb|ADP69579.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Rhodomicrobium vannielii ATCC 17100] Length = 175 Score = 155 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 46/127 (36%), Positives = 72/127 (56%), Gaps = 1/127 (0%) Query: 50 ARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108 R+ ++ + G C +E+ P YD+ERFG ASPR +DV++V G ++ M Sbjct: 42 GRSLAIREVDAGSCNACELEIHALGNPVYDVERFGLKFVASPRHADVLLVTGAVSWNMRE 101 Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168 L R Y P+P++V++ G CA G G + S + +I+PVD+ +PGCPPT L+ Sbjct: 102 GLERTYAATPDPKWVVAAGDCAAGCGVFAESRACAGAVAKIIPVDLVIPGCPPTPTDLLK 161 Query: 169 GILLLQK 175 G+L L + Sbjct: 162 GLLALVE 168 >gi|118581190|ref|YP_902440.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Pelobacter propionicus DSM 2379] gi|118581198|ref|YP_902448.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Pelobacter propionicus DSM 2379] gi|118503900|gb|ABL00383.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Pelobacter propionicus DSM 2379] gi|118503908|gb|ABL00391.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Pelobacter propionicus DSM 2379] Length = 179 Score = 155 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 51/121 (42%), Positives = 71/121 (58%), Gaps = 3/121 (2%) Query: 53 GSLMWMT---FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASA 109 SL G C +E++ P YD+ERFG SPR +DVM+ G A Sbjct: 12 RSLWVYHANSGGCNGCDIEVLNVLTPYYDVERFGIKLVGSPRHADVMLCQGPAMRSTGKA 71 Query: 110 LRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYG 169 L+R Y MP P+ V ++GSCA GGG +H SY+V ++++PV+ YVPGCPP EA+I+G Sbjct: 72 LQRAYAAMPGPKLVFAIGSCACGGGIWHDSYAVHGPVEKLIPVNYYVPGCPPRPEAIIWG 131 Query: 170 I 170 + Sbjct: 132 V 132 >gi|15668695|ref|NP_247494.1| carbon monoxide dehydrogenase hydrogenase subunit CooL [Methanocaldococcus jannaschii DSM 2661] gi|38503282|sp|Q57936|Y516_METJA RecName: Full=Uncharacterized protein MJ0516 gi|2826290|gb|AAB98505.1| carbon monoxide dehydrogenase, hydrogenase subunit CooL (cooL) [Methanocaldococcus jannaschii DSM 2661] Length = 148 Score = 155 bits (391), Expect = 3e-36, Method: Composition-based stats. Identities = 47/129 (36%), Positives = 78/129 (60%), Gaps = 4/129 (3%) Query: 51 RTGSLMWM---TFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMA 107 R S+ T G C +E++ PRYD+E++G +PR++DV++V G +T + A Sbjct: 7 RKRSIHVCVVNTGGCNGCDIEIVACLAPRYDIEQYGIYVHNNPREADVLLVTGPVTLQWA 66 Query: 108 SALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALI 167 L+ +Y++ PEP+ V+++G+CA GG + + VV G D+++PVD +PGCPP +I Sbjct: 67 ERLKEIYEKTPEPKIVVAVGACALSGGIFKEGH-VVGGVDKVIPVDAKIPGCPPRPSEII 125 Query: 168 YGILLLQKK 176 IL + K Sbjct: 126 ETILKVAPK 134 >gi|218670928|ref|ZP_03520599.1| NuoB2 NADH I chain B [Rhizobium etli GR56] Length = 117 Score = 155 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 61/114 (53%), Positives = 83/114 (72%), Gaps = 1/114 (0%) Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP 90 + L T+ D +++W+R +L TFG+ACCA+EM+ A RYDL+RFG R SP Sbjct: 5 NNAIRDSVLFTTADSIISWSRRSALWPETFGIACCAIEMISAGCARYDLDRFGVVFRPSP 64 Query: 91 RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR 144 RQSDVMI+AGT+T K A +RR+YDQMPEPR+VI+MG+CA GG Y+ +Y+VV+ Sbjct: 65 RQSDVMIIAGTVTRKFAPVVRRLYDQMPEPRWVIAMGTCAISGGVYN-TYAVVQ 117 >gi|289191770|ref|YP_003457711.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanocaldococcus sp. FS406-22] gi|288938220|gb|ADC68975.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanocaldococcus sp. FS406-22] Length = 148 Score = 155 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 46/134 (34%), Positives = 80/134 (59%), Gaps = 4/134 (2%) Query: 46 LVTWARTGSLMWM---TFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL 102 + + R S+ T G C +E++ PRYD+E++G +PR++DV+++ G + Sbjct: 2 VKEFLRKRSIHVCVINTGGCNGCDIEIVACLAPRYDIEQYGIYVHNNPREADVLLITGPV 61 Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162 T + A L+ +Y++ PEP+ V+++G+CA GG + + VV G D+++PVD +PGCPP Sbjct: 62 TLQWAERLKEIYEKTPEPKIVVAVGACALSGGIFKEGH-VVGGVDKVIPVDAKIPGCPPR 120 Query: 163 AEALIYGILLLQKK 176 +I IL + K Sbjct: 121 PSEIIETILKVAPK 134 >gi|82777869|ref|YP_404218.1| hydrogenase 4 Fe-S subunit [Shigella dysenteriae Sd197] gi|81242017|gb|ABB62727.1| hydrogenase 4 Fe-S subunit [Shigella dysenteriae Sd197] Length = 252 Score = 155 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 50/122 (40%), Positives = 71/122 (58%), Gaps = 4/122 (3%) Query: 60 FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119 G C +E+ A P +D ERFG +SPR +D+++ G +T M R Y+ P+ Sbjct: 42 GGCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMRMPALRAYESAPD 101 Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQK 175 + +S G+C GGG +H YSV G D IVP+D+++PGCPPT A I+G LLQ+ Sbjct: 102 HKICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWLPGCPPTPAATIHGFAVALGLLQQ 161 Query: 176 KI 177 KI Sbjct: 162 KI 163 >gi|157954631|gb|ABW05548.1| formate hydrogenlyase subunit H [Thermococcus litoralis DSM 5473] Length = 256 Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats. Identities = 47/138 (34%), Positives = 75/138 (54%), Gaps = 17/138 (12%) Query: 53 GSLMWMT---FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASA 109 S+ C +E++ P YD+ER G ++PR + ++V G LT + + Sbjct: 4 RSVWVFHLNTGACNGCDIEILDVLTPYYDVERLGVKLVSTPRHAHALLVTGPLTRQSYYS 63 Query: 110 LRRVYDQM-PEPRYVISMGSCANGGGYYHYSYSVVRGCDR-------------IVPVDIY 155 +R Y+ M P+PR VI++G+CA GG ++ SY+V R +R +PVD+Y Sbjct: 64 AKRAYEAMPPKPRIVIAIGTCACSGGIFYNSYAVRRESERLGLEYPRAGGTSEFLPVDVY 123 Query: 156 VPGCPPTAEALIYGILLL 173 +PGCPP E ++YG+ LL Sbjct: 124 IPGCPPRPEEILYGLALL 141 >gi|258593559|emb|CBE69900.1| HycG protein [NC10 bacterium 'Dutch sediment'] Length = 172 Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats. Identities = 49/129 (37%), Positives = 73/129 (56%), Gaps = 1/129 (0%) Query: 49 WARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMA 107 + R+ + + G C +E+ + P YDLERFG ASPR +D ++V G +T MA Sbjct: 42 FGRSLHIREVDAGSCNGCELEIGALNNPYYDLERFGMHFVASPRHADCLLVTGPVTRNMA 101 Query: 108 SALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALI 167 L+R YD P+P+ V+++G CA G + Y VV IVPVD+ V GCPP+ ++ Sbjct: 102 DPLKRTYDATPDPKIVVAVGDCARDCGIFAGGYGVVGPVSAIVPVDVVVGGCPPSPSMIL 161 Query: 168 YGILLLQKK 176 GIL ++ Sbjct: 162 AGILAALER 170 >gi|2127915|pir||D64364 formate hydrogenlyase, subunit 7 - Methanococcus jannaschii Length = 153 Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats. Identities = 47/129 (36%), Positives = 78/129 (60%), Gaps = 4/129 (3%) Query: 51 RTGSLMWM---TFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMA 107 R S+ T G C +E++ PRYD+E++G +PR++DV++V G +T + A Sbjct: 12 RKRSIHVCVVNTGGCNGCDIEIVACLAPRYDIEQYGIYVHNNPREADVLLVTGPVTLQWA 71 Query: 108 SALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALI 167 L+ +Y++ PEP+ V+++G+CA GG + + VV G D+++PVD +PGCPP +I Sbjct: 72 ERLKEIYEKTPEPKIVVAVGACALSGGIFKEGH-VVGGVDKVIPVDAKIPGCPPRPSEII 130 Query: 168 YGILLLQKK 176 IL + K Sbjct: 131 ETILKVAPK 139 >gi|330008023|ref|ZP_08306139.1| NADH ubiquinone oxidoreductase, subunit [Klebsiella sp. MS 92-3] gi|328535254|gb|EGF61746.1| NADH ubiquinone oxidoreductase, subunit [Klebsiella sp. MS 92-3] Length = 255 Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats. Identities = 51/150 (34%), Positives = 75/150 (50%), Gaps = 5/150 (3%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPR 91 + L R+ + + G C +E+ P +D ERFG SPR Sbjct: 18 TVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPR 77 Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151 +D+++ G +T M S R + P+P+ IS G+C N GG +H Y V G D+IVP Sbjct: 78 HADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVP 137 Query: 152 VDIYVPGCPPTAEALIYGILL----LQKKI 177 VD+Y+PG PPT A +YG + L++KI Sbjct: 138 VDVYIPGSPPTPAATLYGFAMALGLLEQKI 167 >gi|309786198|ref|ZP_07680826.1| formate hydrogenlyase subunit 7 [Shigella dysenteriae 1617] gi|308925943|gb|EFP71422.1| formate hydrogenlyase subunit 7 [Shigella dysenteriae 1617] Length = 213 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 50/126 (39%), Positives = 70/126 (55%), Gaps = 4/126 (3%) Query: 60 FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119 G C +E+ P +D ERFG SPR +D+++ G +T M S R + P+ Sbjct: 4 GGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPD 63 Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILL----LQK 175 P+ IS G+C N GG +H Y V G D+IVPVD+Y+P CPPT A +YG + L++ Sbjct: 64 PKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPSCPPTPAATLYGFAMALGLLEQ 123 Query: 176 KIRRVG 181 KI G Sbjct: 124 KIHARG 129 >gi|257791323|ref|YP_003181929.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Eggerthella lenta DSM 2243] gi|317490460|ref|ZP_07948942.1| NADH ubiquinone oxidoreductase [Eggerthella sp. 1_3_56FAA] gi|325831504|ref|ZP_08164758.1| NADH ubiquinone oxidoreductase, 20 Kd subunit [Eggerthella sp. HGA1] gi|257475220|gb|ACV55540.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Eggerthella lenta DSM 2243] gi|316910453|gb|EFV32080.1| NADH ubiquinone oxidoreductase [Eggerthella sp. 1_3_56FAA] gi|325486758|gb|EGC89206.1| NADH ubiquinone oxidoreductase, 20 Kd subunit [Eggerthella sp. HGA1] Length = 147 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 44/140 (31%), Positives = 78/140 (55%), Gaps = 7/140 (5%) Query: 52 TGSLMWMTF---GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108 T S + + C +E++ A P +D+ERFG +P+ +D+ +V G++ + Sbjct: 5 TKSPWVIHYDGSSCNGCDIEVLAALCPGFDVERFGIINTGNPKHADIFLVTGSVNEQNIG 64 Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168 ++ +Y+QM EP+ VI+ G CA G +H Y+V+ G D+ +PVD+Y PGC EA+I Sbjct: 65 VVQEIYNQMVEPKVVIACGICACSAGIFHDCYNVIGGVDQAIPVDVYAPGCAVRPEAIID 124 Query: 169 GILL----LQKKIRRVGNVK 184 ++ L++K + + K Sbjct: 125 AVVQGLGILEEKSKALQAQK 144 >gi|210631897|ref|ZP_03297109.1| hypothetical protein COLSTE_00999 [Collinsella stercoris DSM 13279] gi|210159822|gb|EEA90793.1| hypothetical protein COLSTE_00999 [Collinsella stercoris DSM 13279] Length = 228 Score = 154 bits (389), Expect = 5e-36, Method: Composition-based stats. Identities = 42/124 (33%), Positives = 71/124 (57%), Gaps = 3/124 (2%) Query: 52 TGSLMWMTF---GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108 + S + + C +E++ + MP YD+ERFG +P+ +D+ +V G++ + Sbjct: 5 SKSPWLIHYDGSSCNGCDIEVLDSMMPLYDIERFGIINTGNPKHADIFLVTGSVNAQNIE 64 Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168 +R +YDQM EP+ V++ G CA GG + Y+V+ G D+ +PVD+Y PGC E +I Sbjct: 65 VVRHIYDQMLEPKVVVACGICACTGGVFRDCYNVIGGVDKAIPVDVYAPGCAVRPETIID 124 Query: 169 GILL 172 +L Sbjct: 125 AVLK 128 >gi|320176266|gb|EFW51327.1| Hydrogenase-4 component I [Shigella dysenteriae CDC 74-1112] Length = 224 Score = 154 bits (389), Expect = 5e-36, Method: Composition-based stats. Identities = 50/122 (40%), Positives = 71/122 (58%), Gaps = 4/122 (3%) Query: 60 FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119 G C +E+ A P +D ERFG +SPR +D+++ G +T M R Y+ P+ Sbjct: 42 GGCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMRMPALRAYESAPD 101 Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQK 175 + +S G+C GGG +H YSV G D IVP+D+++PGCPPT A I+G LLQ+ Sbjct: 102 HKICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHGFAVALGLLQQ 161 Query: 176 KI 177 KI Sbjct: 162 KI 163 >gi|309784775|ref|ZP_07679408.1| hydrogenase-4 component I [Shigella dysenteriae 1617] gi|308927145|gb|EFP72619.1| hydrogenase-4 component I [Shigella dysenteriae 1617] Length = 231 Score = 154 bits (389), Expect = 6e-36, Method: Composition-based stats. Identities = 50/122 (40%), Positives = 71/122 (58%), Gaps = 4/122 (3%) Query: 60 FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119 G C +E+ A P +D ERFG +SPR +D+++ G +T M R Y+ P+ Sbjct: 21 GGCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMRMPALRAYESAPD 80 Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQK 175 + +S G+C GGG +H YSV G D IVP+D+++PGCPPT A I+G LLQ+ Sbjct: 81 HKICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWLPGCPPTPAATIHGFAVALGLLQQ 140 Query: 176 KI 177 KI Sbjct: 141 KI 142 >gi|289806308|ref|ZP_06536937.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 160 Score = 154 bits (389), Expect = 6e-36, Method: Composition-based stats. Identities = 49/141 (34%), Positives = 71/141 (50%), Gaps = 1/141 (0%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPR 91 + L R+ + + G C +E+ P +D ERFG SPR Sbjct: 18 TVDESIASMKASLLKNIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPR 77 Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151 +D+++ G +T M S R + P+P+ IS G+C N GG +H Y V G D+IVP Sbjct: 78 HADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVP 137 Query: 152 VDIYVPGCPPTAEALIYGILL 172 VD+Y+PGCPPT A +YG + Sbjct: 138 VDVYIPGCPPTPAATLYGFAM 158 >gi|296109961|ref|YP_003616910.1| hypothetical protein Metin_1296 [Methanocaldococcus infernus ME] gi|295434775|gb|ADG13946.1| hypothetical protein Metin_1296 [Methanocaldococcus infernus ME] Length = 146 Score = 154 bits (389), Expect = 6e-36, Method: Composition-based stats. Identities = 50/143 (34%), Positives = 82/143 (57%), Gaps = 4/143 (2%) Query: 46 LVTWARTGSLM---WMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL 102 + T+ R SL T G C VE++ PRYDLE++G +PR++D+++V+G + Sbjct: 1 MKTFFRKRSLHLCLINTGGCNGCDVEVLSCLAPRYDLEQYGIYFHNNPREADILVVSGPV 60 Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162 T + ++ +Y+++PEP+ VI++G+CA GG + + +G I+PVD VPGCPP Sbjct: 61 TLQWKERIKELYEKVPEPKIVIALGACALSGGIFKEGH-TCKGVLNILPVDAKVPGCPPK 119 Query: 163 AEALIYGILLLQKKIRRVGNVKC 185 +I IL + K+ KC Sbjct: 120 PAEIIKAILKVAPKLIAEREKKC 142 >gi|188996637|ref|YP_001930888.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Sulfurihydrogenibium sp. YO3AOP1] gi|188931704|gb|ACD66334.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Sulfurihydrogenibium sp. YO3AOP1] Length = 173 Score = 154 bits (389), Expect = 6e-36, Method: Composition-based stats. Identities = 45/126 (35%), Positives = 75/126 (59%), Gaps = 1/126 (0%) Query: 52 TGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASAL 110 + ++ + G C E+ S P YD+ERFG ASP+ +D +++ G LT M A+ Sbjct: 43 SFAIREVDSGSCNACEYEISALSNPYYDIERFGVKFVASPKHADAIMITGCLTRNMYEAV 102 Query: 111 RRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGI 170 + Y+ +P P+++I++G CA GG + SY+V+ G +P+DI++ GCPP +I G+ Sbjct: 103 MKAYENVPNPKFIIAVGDCALDGGTFKGSYAVMDGIKDKLPIDIWIKGCPPEPIDIISGL 162 Query: 171 LLLQKK 176 L+L K Sbjct: 163 LILLNK 168 >gi|296134788|ref|YP_003642030.1| hypothetical protein Tint_0288 [Thiomonas intermedia K12] gi|295794910|gb|ADG29700.1| hypothetical protein Tint_0288 [Thiomonas intermedia K12] Length = 172 Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats. Identities = 58/162 (35%), Positives = 85/162 (52%), Gaps = 13/162 (8%) Query: 12 SGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMM 70 + Q S DA+ RIS+++ H R ++ + G C +E+ Sbjct: 17 APQISSLPVPPDAEVQRISADLLH------------LIGRAPAIRVVDAGSCNGCELEIN 64 Query: 71 QASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCA 130 S P Y++E G ASPR +D+++V G ++ M ALRR YD MPEPR V++ G CA Sbjct: 65 ALSNPYYNIEGLGVHFVASPRHADLLLVTGPVSRHMELALRRTYDAMPEPRLVVAAGDCA 124 Query: 131 NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILL 172 G G + Y+V ++PVD+ VPGCPP+ AL+ GIL Sbjct: 125 AGCGVHSQGYAVCGRVAEVLPVDVTVPGCPPSPVALLQGILQ 166 >gi|300921421|ref|ZP_07137781.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 115-1] gi|300411655|gb|EFJ94965.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 115-1] Length = 176 Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats. Identities = 50/122 (40%), Positives = 71/122 (58%), Gaps = 4/122 (3%) Query: 60 FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119 G C +E+ A P +D ERFG +SPR +D+++ G +T M R Y+ P+ Sbjct: 42 GGCNACEIEIFAAITPVFDAERFGIKVISSPRHADILLFTGAVTRAMRMPALRAYESAPD 101 Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQK 175 + +S G+C GGG +H YSV G D IVP+D+++PGCPPT A I+G LLQ+ Sbjct: 102 HKICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHGFAVALGLLQQ 161 Query: 176 KI 177 KI Sbjct: 162 KI 163 >gi|294338744|emb|CAZ87076.1| putative NADH ubiquinone oxidoreductase domain, 20 kDa subunit [Thiomonas sp. 3As] Length = 172 Score = 153 bits (388), Expect = 9e-36, Method: Composition-based stats. Identities = 52/132 (39%), Positives = 75/132 (56%), Gaps = 1/132 (0%) Query: 42 SVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAG 100 S D L R ++ + G C +E+ S P Y++E G ASPR +D+++V G Sbjct: 35 SADLLRLIGRALAIRVVDAGSCNGCELEINALSNPYYNIEGLGVHFVASPRHADLLLVTG 94 Query: 101 TLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCP 160 ++ M ALRR YD MPEPR V++ G CA G G + Y+V ++PVD+ VPGCP Sbjct: 95 PVSRHMELALRRTYDAMPEPRLVVAAGDCAAGCGVHSQGYAVCGRVAEVLPVDVTVPGCP 154 Query: 161 PTAEALIYGILL 172 P+ AL+ GI+ Sbjct: 155 PSPVALLQGIMQ 166 >gi|303243875|ref|ZP_07330215.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanothermococcus okinawensis IH1] gi|302485811|gb|EFL48735.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanothermococcus okinawensis IH1] Length = 251 Score = 153 bits (387), Expect = 9e-36, Method: Composition-based stats. Identities = 53/168 (31%), Positives = 86/168 (51%), Gaps = 3/168 (1%) Query: 9 KIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWM-TFGLACCAV 67 K +L++ D I E + + +L + ++ L ++ G C Sbjct: 86 KFTRDYRMFALKREDLIIKDILKEPKMDNSKIKKIKKL--FGKSVYLRYVCAGGCNACDA 143 Query: 68 EMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMG 127 ++ + P YDL RFG ASPR +D ++V G +T M AL + Y+ +P P+ VI++G Sbjct: 144 DVNVLNTPVYDLSRFGIKFAASPRHADGLVVTGPITKNMELALMKTYNAIPSPKCVIAVG 203 Query: 128 SCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175 +CA GG + + VV G D+I+PVD+Y+PGCPP +Y + K Sbjct: 204 ACAISGGLFRENEEVVGGVDKILPVDLYIPGCPPHPFTNLYAFVKFFK 251 >gi|270308816|ref|YP_003330874.1| hydrogenase, HycG subunit [Dehalococcoides sp. VS] gi|270154708|gb|ACZ62546.1| hydrogenase, HycG subunit [Dehalococcoides sp. VS] Length = 171 Score = 153 bits (387), Expect = 9e-36, Method: Composition-based stats. Identities = 53/178 (29%), Positives = 93/178 (52%), Gaps = 9/178 (5%) Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62 + V I + + + D+DF ++ G + + + + R+ ++ + G Sbjct: 1 MKNVLNNIFKPKVCRQMPEGDSDFDKL-------GIALKTEIHAI-FGRSLAIRALDSGS 52 Query: 63 -ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPR 121 +E+ S P YD+ERFG + ASPR +D++IV G ++ MA A+R+ +D MP P+ Sbjct: 53 DNSAEIELNNLSNPYYDIERFGISFVASPRHADILIVTGAVSQNMAIAVRKTFDAMPSPK 112 Query: 122 YVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179 VI++G A G G Y V+ G D+I+ VD+ +PG PP +I +L L + + + Sbjct: 113 LVIALGDDACGNGIVCSGYGVLGGVDKILLVDLKIPGNPPEPIQIITALLGLMRSLGK 170 >gi|56477805|ref|YP_159394.1| subunit of putative formate hydrogenlyase-like membrane complex [Aromatoleum aromaticum EbN1] gi|56313848|emb|CAI08493.1| subunit of putative formate hydrogenlyase-like membrane complex [Aromatoleum aromaticum EbN1] Length = 187 Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 44/133 (33%), Positives = 72/133 (54%), Gaps = 1/133 (0%) Query: 44 DQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL 102 D L R ++ + G C +E+ + P Y++E G ASPR +D+++V G + Sbjct: 35 DILAILGRALAIRHVDGGSCNGCELEIHALNNPYYNIEGLGIKFVASPRHADMLLVTGPV 94 Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162 + M AL+R YD +P P+ V+++G C GG + SY+ ++PVD+ VPGCPP Sbjct: 95 SRHMELALKRTYDAIPAPKLVVAIGDCGCTGGIFGESYASCGRISNVIPVDVTVPGCPPP 154 Query: 163 AEALIYGILLLQK 175 ++ GIL + Sbjct: 155 PADILAGILTALR 167 >gi|53804774|ref|YP_113607.1| hydrogenase subunit [Methylococcus capsulatus str. Bath] gi|53758535|gb|AAU92826.1| hydrogenase subunit [Methylococcus capsulatus str. Bath] Length = 169 Score = 153 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 50/152 (32%), Positives = 85/152 (55%), Gaps = 9/152 (5%) Query: 23 DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLER 81 D + R+ +E L +D +A + ++ + G C +E+ P YD+ER Sbjct: 23 DPELDRLGAE------LKAVIDG--RFAGSLAIRQVDAGSCNACELEIAALGNPFYDIER 74 Query: 82 FGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYS 141 +G ASPR +DV++V G ++ M +AL+ ++ PEP++V+++GSCA GG + +Y+ Sbjct: 75 YGVHFVASPRHADVLMVTGPVSRHMQAALQATWEATPEPKWVVAVGSCAADGGEFGVNYA 134 Query: 142 VVRGCDRIVPVDIYVPGCPPTAEALIYGILLL 173 ++PVD +PGCPPT L+ G+L L Sbjct: 135 SCGAVGNVLPVDAVIPGCPPTPTDLVRGLLSL 166 >gi|139437055|ref|ZP_01771215.1| Hypothetical protein COLAER_00190 [Collinsella aerofaciens ATCC 25986] gi|133776702|gb|EBA40522.1| Hypothetical protein COLAER_00190 [Collinsella aerofaciens ATCC 25986] Length = 260 Score = 153 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 47/156 (30%), Positives = 79/156 (50%), Gaps = 5/156 (3%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 + L R+ + + G C +E+ + P +D+ERFG SPR Sbjct: 20 LDESIEKAKATLLKKIKRSVYVYRVDCGGCNGCEIEIFGSITPVFDVERFGIKVVPSPRH 79 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 +DV++ G +T M R ++ P+P+ V+S G+C GG ++ +Y V G D+I+PV Sbjct: 80 ADVLLYTGAVTRAMRMPALRAFEAAPDPKIVVSYGACGCTGGIFYDNYCVWGGTDKILPV 139 Query: 153 DIYVPGCPPTAEALIYGILL----LQKKIRRVGNVK 184 D+Y+PGCPP+ +YG + L +K+ V+ Sbjct: 140 DVYIPGCPPSPAQTVYGFAMALGLLDQKLHAETTVE 175 >gi|254674105|emb|CBA09889.1| NADH dehydrogenase I chain B [Neisseria meningitidis alpha275] Length = 111 Score = 153 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 74/93 (79%), Positives = 86/93 (92%) Query: 91 RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150 RQ+D+MIVAGTLTNKMA ALRRVYDQ+ EPR+V+SMGSCANGGGYYHYSYSVVRG DR+V Sbjct: 15 RQADLMIVAGTLTNKMAPALRRVYDQLAEPRWVLSMGSCANGGGYYHYSYSVVRGADRVV 74 Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183 PVD+YVPGCPPTAEALIYG++ LQ+KI+R + Sbjct: 75 PVDVYVPGCPPTAEALIYGLIQLQQKIKRTSTI 107 >gi|332087933|gb|EGI93058.1| hydrogenase-4 component I [Shigella boydii 5216-82] Length = 252 Score = 153 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 49/122 (40%), Positives = 70/122 (57%), Gaps = 4/122 (3%) Query: 60 FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119 G C +E+ A P +D ERFG +S R +D+++ G +T M R Y+ P+ Sbjct: 42 GGCNACEIEIFAAITPVFDAERFGIKVISSLRHADILLFTGAVTRAMRMPALRAYESAPD 101 Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQK 175 + +S G+C GGG +H YSV G D IVP+D+++PGCPPT A I+G LLQ+ Sbjct: 102 HKICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHGFAVALGLLQQ 161 Query: 176 KI 177 KI Sbjct: 162 KI 163 >gi|282165307|ref|YP_003357692.1| putative [NiFe]-hydrogenase small subunit [Methanocella paludicola SANAE] gi|282157621|dbj|BAI62709.1| putative [NiFe]-hydrogenase small subunit [Methanocella paludicola SANAE] Length = 136 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 51/130 (39%), Positives = 73/130 (56%), Gaps = 5/130 (3%) Query: 52 TGSLMWMT---FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108 S G C +E++ PRYDLER G ASPR +D+++V G + Sbjct: 6 KKSPWIYHAHAGGCVGCDIELLACMGPRYDLERLGIKWVASPRYADILLVTGPVPLHTKP 65 Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHY--SYSVVRGCDRIVPVDIYVPGCPPTAEAL 166 L RVY Q PEP+ VI+MG+C G + +YS+ ++I+PVD+ +PGCPP EA+ Sbjct: 66 FLERVYAQTPEPKRVIAMGACGTSCGVFIDDENYSIAGPVEKIIPVDVKIPGCPPKPEAI 125 Query: 167 IYGILLLQKK 176 I GIL + +K Sbjct: 126 IDGILKVMRK 135 >gi|256827153|ref|YP_003151112.1| ech hydrogenase subunit C [Cryptobacterium curtum DSM 15641] gi|256583296|gb|ACU94430.1| ech hydrogenase subunit C [Cryptobacterium curtum DSM 15641] Length = 181 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 42/132 (31%), Positives = 75/132 (56%), Gaps = 7/132 (5%) Query: 52 TGSLMWMTF---GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108 + S + + C +E++ A P +D ERFG +P+ +D+++V G++ + Sbjct: 5 SKSPWVIHYDASSCNGCDIEVLAALCPGFDAERFGVINTGNPKHADILLVTGSVNERNIK 64 Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168 ++ +Y+QM EP+ V++ G CA GG +H Y+V+ G + VPVD+Y PGC EA+I Sbjct: 65 VVQELYNQMIEPKAVVACGCCACTGGVFHDCYNVIGGVENAVPVDVYAPGCAIRPEAIID 124 Query: 169 GILL----LQKK 176 ++ L++K Sbjct: 125 AVVEAVGILEEK 136 >gi|320355287|ref|YP_004196626.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfobulbus propionicus DSM 2032] gi|320123789|gb|ADW19335.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfobulbus propionicus DSM 2032] Length = 248 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 45/129 (34%), Positives = 70/129 (54%), Gaps = 1/129 (0%) Query: 49 WARTGSLMWMT-FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMA 107 + R+ L ++ G C + + P +DL RFG ASPR +D + V G +T M Sbjct: 120 FGRSLQLRQVSAGGCNACEADTNVLNTPFFDLSRFGIDFVASPRHADGIHVTGPITRNMR 179 Query: 108 SALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALI 167 +AL Y +P P+ VI+ G CA GG +H S ++ + ++PVD+Y+PGCPP + Sbjct: 180 TALLDTYAAVPAPKVVIASGCCAISGGPFHGSREILGDLNALIPVDLYIPGCPPHPLTTL 239 Query: 168 YGILLLQKK 176 + +L KK Sbjct: 240 HALLAFFKK 248 >gi|91779764|ref|YP_554972.1| putative hydrogenase/oxidoreductase subunit [Burkholderia xenovorans LB400] gi|91692424|gb|ABE35622.1| putative hydrogenase/oxidoreductase subunit [Burkholderia xenovorans LB400] Length = 177 Score = 151 bits (382), Expect = 3e-35, Method: Composition-based stats. Identities = 50/171 (29%), Positives = 84/171 (49%), Gaps = 9/171 (5%) Query: 6 VNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFG-LAC 64 + Q +G + + + D + S +I + +D L R + + G Sbjct: 5 LKQIARTGTPNERVPQADDSWHTESRQIQQE-----ILDVL---GRALCIREIDAGSCNG 56 Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 C +E+ S P Y++E G ASPR +D+++V G LT M A+ + Y+ P P+ V+ Sbjct: 57 CELEINALSNPYYNIEGLGIRFVASPRHADMLLVTGPLTLNMREAVWQAYEATPHPKLVV 116 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175 + G CA GG + SY+V ++PVD+ +PGCPP ++ GIL + Sbjct: 117 ATGECACTGGVFRDSYAVCGPLSTLLPVDVTIPGCPPPPIDILRGILTALR 167 >gi|296242761|ref|YP_003650248.1| NADH dehydrogenase 30 kDa subunit [Thermosphaera aggregans DSM 11486] gi|296095345|gb|ADG91296.1| NADH dehydrogenase (ubiquinone) 30 kDa subunit [Thermosphaera aggregans DSM 11486] Length = 339 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 52/138 (37%), Positives = 77/138 (55%) Query: 40 VTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVA 99 ++ +D+LV WAR+ S+ + + AC AVE M D ER+G+ P SPRQSD+ + Sbjct: 1 MSILDKLVRWARSRSIWMIHYCSACGAVEFPPLVMSPLDWERYGYMPAPSPRQSDLYVGM 60 Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGC 159 G LT K +Y Q+PEPR+V + +C GG Y SY+ + D V V+ +VPGC Sbjct: 61 GYLTKKTVKLFLNMYRQVPEPRFVAAGCNCTATGGLYWDSYATYKRLDEFVEVEGWVPGC 120 Query: 160 PPTAEALIYGILLLQKKI 177 P + + L++KI Sbjct: 121 MPMPDDYFSLLEHLRRKI 138 >gi|91786823|ref|YP_547775.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Polaromonas sp. JS666] gi|91696048|gb|ABE42877.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Polaromonas sp. JS666] Length = 181 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 48/140 (34%), Positives = 77/140 (55%), Gaps = 2/140 (1%) Query: 44 DQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL 102 D L+ + ++ + G C +E+ + P Y++E G ASPR +D+++V G + Sbjct: 35 DILLILGQALTIRAVDAGSCNGCELEIHALNNPYYNIEGLGIKFVASPRHADMLLVTGPV 94 Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162 + M ALRR YD PEP+ V+++G C GG + SY+ ++PVD+ VPGCPP Sbjct: 95 SRHMDEALRRTYDATPEPKLVVAVGDCGCTGGIFGDSYASCGRVANVIPVDVTVPGCPPP 154 Query: 163 AEALIYGILLLQKKIRRVGN 182 ++ GIL ++ RR G Sbjct: 155 PIEILRGILTAVRQ-RRPGT 173 >gi|308513287|ref|NP_951802.3| NAD-dependent dehydrogenase subunit [Geobacter sulfurreducens PCA] gi|39982615|gb|AAR34075.1| NAD-dependent dehydrogenase subunit [Geobacter sulfurreducens PCA] Length = 229 Score = 151 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 43/119 (36%), Positives = 64/119 (53%) Query: 60 FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119 G C + S +DL RFG ASPR +D + V G +T M AL ++ +P Sbjct: 109 GGCNACEADTNVLSTIGWDLGRFGIQFVASPRHADGLWVTGPVTENMREALLMTWEAIPA 168 Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 P+ V++ G+CA GGG + S G I+PVD+++PGCPP ++ G+L L +I Sbjct: 169 PKIVVACGACAIGGGPFADSPETHNGVADILPVDLFIPGCPPHPATILDGLLRLIGRIE 227 >gi|51245172|ref|YP_065056.1| NADH dehydrogenase, subunit 10 [Desulfotalea psychrophila LSv54] gi|50876209|emb|CAG36049.1| probable NADH dehydrogenase, subunit 10 [Desulfotalea psychrophila LSv54] Length = 128 Score = 151 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 63/112 (56%), Positives = 81/112 (72%), Gaps = 3/112 (2%) Query: 69 MMQASMPRYDLERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMG 127 MM A RYDL RFG R S RQSDVMIVAGT++ KMA ++ +YDQMPEP++VI+MG Sbjct: 1 MMSAGCARYDLSRFGAEVFRPSARQSDVMIVAGTISKKMAEGIKTLYDQMPEPKWVIAMG 60 Query: 128 SCANGGGY--YHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 +CA GG + Y ++ G D+I+PVDIY+PGCPP EALI GI+ L+ +I Sbjct: 61 NCAISGGPFVFEGQYGIIEGADKILPVDIYIPGCPPRPEALIEGIIELEHQI 112 >gi|91780242|ref|YP_555449.1| putative hydrogenase/oxidoreductase subunit [Burkholderia xenovorans LB400] gi|91692902|gb|ABE36099.1| Putative hydrogenase/oxidoreductase subunit [Burkholderia xenovorans LB400] Length = 175 Score = 151 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 45/136 (33%), Positives = 74/136 (54%), Gaps = 2/136 (1%) Query: 50 ARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108 R + + G C +E+ + P Y+LE G ASPR +D+++V G LT M Sbjct: 41 GRALCIREIDAGSCNGCELEIHALNNPYYNLEGLGIRFVASPRHADMLLVTGPLTVNMTE 100 Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168 A+R Y+ P+P+ V++ G CA GG + SY+V +++PVD+ +PGCPP ++ Sbjct: 101 AVRLAYEATPDPKLVVATGECACTGGMFKESYAVCGPLAKLLPVDVTIPGCPPPPLDILR 160 Query: 169 GILLLQKKIRRVGNVK 184 GIL + ++R + Sbjct: 161 GILGALR-VKRTTRAR 175 >gi|261402604|ref|YP_003246828.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanocaldococcus vulcanius M7] gi|261369597|gb|ACX72346.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanocaldococcus vulcanius M7] Length = 152 Score = 150 bits (380), Expect = 6e-35, Method: Composition-based stats. Identities = 44/129 (34%), Positives = 77/129 (59%), Gaps = 4/129 (3%) Query: 51 RTGSLMWM---TFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMA 107 R S+ T G C +E++ PRYD+E++G +PR++DV+++ G +T + A Sbjct: 7 RKRSIHVCVVNTGGCNGCDIEIVSCLSPRYDIEQYGIYVHNNPREADVLLITGPVTLQWA 66 Query: 108 SALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALI 167 L+ +Y++ PEP+ V+++G+CA GG + + V+ G +++PVD +PGCPP +I Sbjct: 67 ERLKEIYEKTPEPKVVVAVGACALSGGIFKEGH-VIGGVHKVIPVDAKIPGCPPRPSEII 125 Query: 168 YGILLLQKK 176 IL + K Sbjct: 126 ETILKVAPK 134 >gi|167839774|ref|ZP_02466458.1| Formate hydrogenlyase subunit 7 [Burkholderia thailandensis MSMB43] Length = 174 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 46/130 (35%), Positives = 70/130 (53%), Gaps = 1/130 (0%) Query: 50 ARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108 R + + G C +E+ P Y++E G ASPR +D++++ G LT M Sbjct: 41 GRALCIRAVDAGSCNGCELELHALGNPYYNIEGLGIKFVASPRHADMLLITGPLTLNMRD 100 Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168 A+R YD P P+ V++ G CA GG + SY+V + +VPVDI +PGCPP L+ Sbjct: 101 AVRLAYDATPAPKLVVAAGDCACTGGVFAGSYAVCGPVETLVPVDIAIPGCPPRPLDLLR 160 Query: 169 GILLLQKKIR 178 GI +++R Sbjct: 161 GIRSALERVR 170 >gi|144900610|emb|CAM77474.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Magnetospirillum gryphiswaldense MSR-1] Length = 176 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 56/129 (43%), Positives = 80/129 (62%), Gaps = 1/129 (0%) Query: 50 ARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108 R+ ++ + G C +E+ + P YDLERFG ASPR +DV++V G ++ MA Sbjct: 46 GRSLAIRAVDAGSCNGCELEIHAVNHPVYDLERFGIKFVASPRHADVLLVTGPVSWNMAE 105 Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168 ALRR + PEPR+V++MG CA GG + SY+V G IVPVD+ +PGCPPT +I Sbjct: 106 ALRRTVEATPEPRWVVAMGDCAIDGGCFAGSYAVAGGAAAIVPVDMTIPGCPPTPINIIA 165 Query: 169 GILLLQKKI 177 G+L L + + Sbjct: 166 GLLALLEAV 174 >gi|255525491|ref|ZP_05392428.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Clostridium carboxidivorans P7] gi|296188576|ref|ZP_06856964.1| 4Fe-4S binding domain protein [Clostridium carboxidivorans P7] gi|255510856|gb|EET87159.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Clostridium carboxidivorans P7] gi|296046840|gb|EFG86286.1| 4Fe-4S binding domain protein [Clostridium carboxidivorans P7] Length = 242 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 47/134 (35%), Positives = 76/134 (56%), Gaps = 1/134 (0%) Query: 48 TWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKM 106 + R+ L + G C +E+ YDL R+G ASPR +D ++V G +T M Sbjct: 109 KFKRSLVLRSVDTGSCNGCMMEVSNTQNTYYDLSRYGIKFAASPRHADGIVVTGPVTLNM 168 Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL 166 AL + YD + +P+ VI++GSCA GG + YSV + I+ V++ +PGCPP+ +A+ Sbjct: 169 KEALIKTYDAISDPKIVIAVGSCAYSGGIFKDGYSVCEDLNEILKVNLVIPGCPPSPQAI 228 Query: 167 IYGILLLQKKIRRV 180 +YG+L + K+ Sbjct: 229 LYGMLKIINKLDEE 242 >gi|139439383|ref|ZP_01772824.1| Hypothetical protein COLAER_01843 [Collinsella aerofaciens ATCC 25986] gi|133775162|gb|EBA38982.1| Hypothetical protein COLAER_01843 [Collinsella aerofaciens ATCC 25986] Length = 195 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 40/124 (32%), Positives = 71/124 (57%), Gaps = 3/124 (2%) Query: 52 TGSLMWMTF---GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108 + S + + C +E++ + P +D ERFG +P+ +D+ +V G++ + Sbjct: 6 SRSPWVIHYDGSSCNGCDIEVLASLTPLFDAERFGVVNTGNPKHADIFLVTGSVNAQNLP 65 Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168 +R++Y+QM EP+ V++ G CA GG + +Y+V+ G DR +PVD+Y PGC E +I Sbjct: 66 VVRQIYNQMLEPKCVVACGICACSGGVFRDAYNVIGGVDRAIPVDVYAPGCAIRPETVID 125 Query: 169 GILL 172 I+ Sbjct: 126 AIVE 129 >gi|156937336|ref|YP_001435132.1| NADH-quinone oxidoreductase, B subunit [Ignicoccus hospitalis KIN4/I] gi|156566320|gb|ABU81725.1| NADH-quinone oxidoreductase, B subunit [Ignicoccus hospitalis KIN4/I] Length = 207 Score = 150 bits (379), Expect = 8e-35, Method: Composition-based stats. Identities = 61/162 (37%), Positives = 91/162 (56%), Gaps = 13/162 (8%) Query: 26 FSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA 85 F ++S E+ K V + + W+R SL + G+ CCA+EMMQA+ +D ER G Sbjct: 6 FKKVSRELIKKS---APVKEALKWSRRNSLWLLHLGIMCCAIEMMQAAFAFHDFERLGVL 62 Query: 86 PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRG 145 RA+PRQ DV+++ G + K+A LRR++ Q P PR+VI MG CA GG + S V+ G Sbjct: 63 ARATPRQVDVILINGPVNRKLAERLRRLFMQTPGPRFVIVMGECAINGGPWWQSDYVLDG 122 Query: 146 CDRIVP-------VDIYV---PGCPPTAEALIYGILLLQKKI 177 ++ D++V GCPP E L+ IL +++ I Sbjct: 123 IHEVIESLPEEYRKDVHVVNLAGCPPRPEGLLRAILKMEELI 164 >gi|20093902|ref|NP_613749.1| Ni,Fe-hydrogenase III small subunit [Methanopyrus kandleri AV19] gi|19886843|gb|AAM01679.1| Ni,Fe-hydrogenase III small subunit [Methanopyrus kandleri AV19] Length = 162 Score = 150 bits (379), Expect = 8e-35, Method: Composition-based stats. Identities = 45/137 (32%), Positives = 79/137 (57%), Gaps = 4/137 (2%) Query: 39 LVTSVDQLVTWARTGSLMW---MTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDV 95 L +++ +L + R+ S+ T G C +E++ RYDLE++G +PR+SDV Sbjct: 3 LKSALKKLKGFVRSRSIHVTVVNTGGCNGCDIEILACYTYRYDLEQYGIYYHNNPRKSDV 62 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPVDI 154 +IV G +T + L ++Y ++PEP+ V+++G+CA GG ++ V ++PVD Sbjct: 63 LIVTGPVTYQWRDKLVKLYHKVPEPKAVVAVGTCACSGGIFNQRGGRVCGPVREVIPVDA 122 Query: 155 YVPGCPPTAEALIYGIL 171 VPGCPP E ++ ++ Sbjct: 123 EVPGCPPRPEEIVSAVV 139 >gi|94313588|ref|YP_586797.1| hydrogenase 4 subunit I [Cupriavidus metallidurans CH34] gi|93357440|gb|ABF11528.1| Hydrogenase-4 subunit I [Cupriavidus metallidurans CH34] Length = 171 Score = 150 bits (379), Expect = 8e-35, Method: Composition-based stats. Identities = 42/123 (34%), Positives = 67/123 (54%), Gaps = 1/123 (0%) Query: 50 ARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108 R ++ + G C +E+ P Y++E G ASPR +D+++V G ++ M Sbjct: 40 GRALTIRQVDAGSCNGCELEIHALGNPYYNIEGLGVRFVASPRHADMLLVTGPVSRHMEE 99 Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168 ALRR Y+ PEP+ V+++G C G + SY+ ++PVD+ VPGCPP ++ Sbjct: 100 ALRRTYEATPEPKLVVAVGDCGCTSGIFGESYASCGRVSNVIPVDVSVPGCPPPPIDILR 159 Query: 169 GIL 171 GIL Sbjct: 160 GIL 162 >gi|326471804|gb|EGD95813.1| NADH-ubiquinone oxidoreductase 20 kDa subunit [Trichophyton tonsurans CBS 112818] Length = 204 Score = 150 bits (379), Expect = 9e-35, Method: Composition-based stats. Identities = 63/128 (49%), Positives = 79/128 (61%) Query: 17 CSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPR 76 E+++ E T ++T DQ+ WAR GSL +TFGLACC VEMM SMPR Sbjct: 60 SRPERLEVPLPSQGEEPTPLRHILTKFDQVANWARQGSLWPLTFGLACCGVEMMAVSMPR 119 Query: 77 YDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY 136 YDL+R G RASPRQ+DV+IV+GT+TNKM ALR +YDQMP+P++V S G Sbjct: 120 YDLDRMGIIYRASPRQADVLIVSGTVTNKMGPALRLLYDQMPDPKWVTSCGRVCAWMSAD 179 Query: 137 HYSYSVVR 144 S SV Sbjct: 180 GRSVSVWD 187 >gi|288961341|ref|YP_003451680.1| NADH dehydrogenase I chain B [Azospirillum sp. B510] gi|288913649|dbj|BAI75136.1| NADH dehydrogenase I chain B [Azospirillum sp. B510] Length = 163 Score = 150 bits (379), Expect = 9e-35, Method: Composition-based stats. Identities = 44/132 (33%), Positives = 76/132 (57%), Gaps = 4/132 (3%) Query: 43 VDQLVTWARTGSLMWM---TFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVA 99 ++++V +R S C +E+ PRYD E+ G +P+ +D+++++ Sbjct: 4 IERVVAISRRRSPWICRLNAGSCNGCDIEITPLLSPRYDAEQLGIELHGTPKHADIVLIS 63 Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRG-CDRIVPVDIYVPG 158 GTLT + A+ +YDQ+P P+ V+++GSC G + S V+ D +VPVD++VPG Sbjct: 64 GTLTLRSRQAILDIYDQVPSPKAVVALGSCPLSGNVFAGSPLVLGQSLDSLVPVDVWVPG 123 Query: 159 CPPTAEALIYGI 170 CPP +A++ GI Sbjct: 124 CPPRPQAILDGI 135 >gi|326484679|gb|EGE08689.1| NADH-ubiquinone oxidoreductase 20 kDa subunit [Trichophyton equinum CBS 127.97] Length = 204 Score = 150 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 63/128 (49%), Positives = 79/128 (61%) Query: 17 CSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPR 76 E+++ E T ++T DQ+ WAR GSL +TFGLACC VEMM SMPR Sbjct: 60 ARPERLEVPLPSQGEEPTPLRHILTKFDQVANWARQGSLWPLTFGLACCGVEMMAVSMPR 119 Query: 77 YDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY 136 YDL+R G RASPRQ+DV+IV+GT+TNKM ALR +YDQMP+P++V S G Sbjct: 120 YDLDRMGIIYRASPRQADVLIVSGTVTNKMGPALRLLYDQMPDPKWVTSCGRVCAWMSAD 179 Query: 137 HYSYSVVR 144 S SV Sbjct: 180 GRSVSVWD 187 >gi|67968299|dbj|BAE00199.1| NADH dehydrogenase subunit K [Selaginella uncinata] Length = 215 Score = 150 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 58/175 (33%), Positives = 89/175 (50%), Gaps = 1/175 (0%) Query: 7 NQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCA 66 + I + + + + + T + T+ + AR S +G +CC Sbjct: 11 DNSIGNDSVNPVVNSMGRPTPGVDRAATPDSIIPTTPNDFTNRARLPSSRPPPYGTSCCF 70 Query: 67 VEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISM 126 E R D +R G PR+SPRQ+D++I AGT T KMA +L R Y+Q PEP++ I+M Sbjct: 71 TEFAPLIGSRSDSDRHGSVPRSSPRQADLIITAGTATTKMAPSLVRSYEQTPEPKHAIAM 130 Query: 127 GSCANGGGYYH-YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 G+C GG +S VRG D+ +P D Y PG PP EA++ + ++K+ R Sbjct: 131 GACTVTGGMLSTDPHSTVRGVDKSIPADTYPPGRPPKPEAIVDATIKPREKVSRE 185 >gi|298504862|gb|ADI83585.1| Ech-hydrogenase-related complex, small subunit [Geobacter sulfurreducens KN400] Length = 251 Score = 150 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 43/119 (36%), Positives = 64/119 (53%) Query: 60 FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119 G C + S +DL RFG ASPR +D + V G +T M AL ++ +P Sbjct: 131 GGCNACEADTNVLSTIGWDLGRFGIQFVASPRHADGLWVTGPVTENMREALLMTWEAIPA 190 Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 P+ V++ G+CA GGG + S G I+PVD+++PGCPP ++ G+L L +I Sbjct: 191 PKIVVACGACAIGGGPFAGSPEAHNGVADILPVDLFIPGCPPHPATILDGLLRLIGRIE 249 >gi|240102300|ref|YP_002958608.1| formate hydrogenlyase I subunit H (Mhy1H) [Thermococcus gammatolerans EJ3] gi|239909853|gb|ACS32744.1| formate hydrogenlyase I subunit H (Mhy1H) [Thermococcus gammatolerans EJ3] Length = 277 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 48/149 (32%), Positives = 81/149 (54%), Gaps = 18/149 (12%) Query: 51 RTGSLMWMT---FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMA 107 R S+ C +E++ P YDLER G +PR +D + + G LT + Sbjct: 5 RLKSVWVYHVDAGSCNGCDIEVLDVLSPYYDLERLGVKVVPNPRHADALFITGPLTRQTR 64 Query: 108 SALRRVYDQMP-EPRYVISMGSCANGGGYYHYSYSVV-------------RGCDRIVPVD 153 AL++ Y+ MP +PR V+++G+CA+ GG ++ SY++ G + IVP+D Sbjct: 65 IALKKAYEAMPPKPRIVVAVGTCASSGGIFYNSYALYNTSPQRGRDRLRSGGPEMIVPID 124 Query: 154 IYVPGCPPTAEALIYGILLLQK-KIRRVG 181 +Y+PGCPP+ E ++YG+ L K +++ Sbjct: 125 MYIPGCPPSPEEILYGVAQLLGIKEKKMK 153 >gi|149034569|gb|EDL89306.1| NADH dehydrogenase (ubiquinone) Fe-S protein 7, isoform CRA_b [Rattus norvegicus] Length = 94 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 78/89 (87%), Positives = 84/89 (94%) Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155 MIVAGTLTNKMA ALR+VYDQMPEPRYV+SMGSCANGGGYYHYSYSVVRGCDRIVPVDIY Sbjct: 1 MIVAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 60 Query: 156 VPGCPPTAEALIYGILLLQKKIRRVGNVK 184 VPGCPPTAEAL+YGIL LQ+KI+R +K Sbjct: 61 VPGCPPTAEALLYGILQLQRKIKREQKLK 89 >gi|256380641|ref|YP_003104301.1| NADH-quinone oxidoreductase, B subunit [Actinosynnema mirum DSM 43827] gi|255924944|gb|ACU40455.1| NADH-quinone oxidoreductase, B subunit [Actinosynnema mirum DSM 43827] Length = 137 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 57/131 (43%), Positives = 84/131 (64%) Query: 47 VTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKM 106 + W T + + GLACC VE+M A +DL+ G P S ++ V++V+GT+T+ M Sbjct: 6 LDWGTTYRVTVLDLGLACCGVEVMAALEGGHDLDALGVDPVRSAGEAHVLVVSGTVTDVM 65 Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL 166 A+ Y +MPEPRYV+S+G+C+N GG Y SYSV +G D+ +PV + VPGCPP EAL Sbjct: 66 LPAVLAAYQEMPEPRYVLSVGACSNTGGPYWDSYSVTKGIDQALPVHVAVPGCPPRPEAL 125 Query: 167 IYGILLLQKKI 177 + G+ L + + Sbjct: 126 LEGLAALHRMV 136 >gi|167572898|ref|ZP_02365772.1| putative hydrogenase subunit [Burkholderia oklahomensis C6786] Length = 174 Score = 149 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 44/122 (36%), Positives = 66/122 (54%), Gaps = 1/122 (0%) Query: 50 ARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108 R + + G C +E+ P Y++E G ASPR +D++++ G LT M Sbjct: 41 GRALCIRAIDAGSCNGCELELHALGNPYYNIEGLGIKFVASPRHADMLLITGPLTLNMRD 100 Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168 A+R YD P P+ V++ G CA GG + SY+V ++ VPVD+ +PGCPP L+ Sbjct: 101 AVRLAYDATPAPKLVVAAGDCACTGGVFADSYAVCGPLEKRVPVDLTIPGCPPRPIDLLR 160 Query: 169 GI 170 GI Sbjct: 161 GI 162 >gi|258653154|ref|YP_003202310.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Nakamurella multipartita DSM 44233] gi|258556379|gb|ACV79321.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Nakamurella multipartita DSM 44233] Length = 162 Score = 149 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 47/120 (39%), Positives = 67/120 (55%), Gaps = 1/120 (0%) Query: 55 LMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRV 113 L + G C VE+ A P YD ER+G ASPR +D ++V G +T MA LRR Sbjct: 40 LRHVDAGSCNGCEVEIGAAFGPVYDAERYGARLVASPRHADALLVTGVVTRNMAQPLRRT 99 Query: 114 YDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLL 173 Y +P+P+ V+++G CA G + + V IVPVD+ +PGCPP E ++ G+ L Sbjct: 100 YQAVPDPKLVVAVGDCARTCGVFRGAPGVAGAVGDIVPVDLEIPGCPPRPEDIVAGLRKL 159 >gi|186470860|ref|YP_001862178.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Burkholderia phymatum STM815] gi|184197169|gb|ACC75132.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Burkholderia phymatum STM815] Length = 176 Score = 149 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 47/129 (36%), Positives = 72/129 (55%), Gaps = 2/129 (1%) Query: 50 ARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108 R + + G C +E+ + P Y++E G ASPR +D+++V G LT M Sbjct: 42 GRALCIRQVDAGSCNGCELEIHALNNPYYNIEGLGIRFVASPRHADMLLVTGPLTLNMKE 101 Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168 A+RRV+ P P+ V++ G CA GG + SY+V ++PVD+ +PGCPP+ L+ Sbjct: 102 AVRRVWQATPHPKLVVAAGDCACTGGIFRDSYAVCGPPSNLLPVDVAIPGCPPSPFDLLT 161 Query: 169 GIL-LLQKK 176 GIL L+ K Sbjct: 162 GILTALRSK 170 >gi|254173148|ref|ZP_04879821.1| hydrogenase-4 component i [Thermococcus sp. AM4] gi|214032557|gb|EEB73386.1| hydrogenase-4 component i [Thermococcus sp. AM4] Length = 276 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 47/149 (31%), Positives = 80/149 (53%), Gaps = 18/149 (12%) Query: 51 RTGSLMWMT---FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMA 107 R S+ C +E++ P YDLER G +PR +D + + G LT + Sbjct: 4 RLKSVWVYHVDAGSCNGCDIEVLDVLSPYYDLERLGIKVVPNPRHADALFITGPLTRQTR 63 Query: 108 SALRRVYDQMP-EPRYVISMGSCANGGGYYHYSYSVV-------------RGCDRIVPVD 153 L++ Y+ MP +PR V+++G+CA+ GG ++ SY++ G + IVP+D Sbjct: 64 IMLKKAYEAMPPKPRIVVAIGTCASSGGIFYNSYALYNTSPQRGRDRLRSGGPEMIVPID 123 Query: 154 IYVPGCPPTAEALIYGILLLQK-KIRRVG 181 +Y+PGCPP+ E ++YG+ L K +++ Sbjct: 124 MYIPGCPPSPEEILYGVAQLLGIKEKKMK 152 >gi|154244129|ref|YP_001415087.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Xanthobacter autotrophicus Py2] gi|154158214|gb|ABS65430.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Xanthobacter autotrophicus Py2] Length = 170 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 48/115 (41%), Positives = 67/115 (58%), Gaps = 1/115 (0%) Query: 50 ARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108 R+ S+ + G C +E+ YDLERFG ASPR +DV++V G + MA Sbjct: 40 GRSLSIREVDAGSCNGCELEIHALGNAFYDLERFGLHVVASPRHADVLLVTGPVAKNMAE 99 Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTA 163 AL+R YD P P++V++ G CA GG + S + G + IVPVD+ +PGCPPT Sbjct: 100 ALKRTYDATPSPKWVVAAGDCAINGGIFAGSSACAGGVEAIVPVDLRIPGCPPTP 154 >gi|317126126|ref|YP_004100238.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Intrasporangium calvum DSM 43043] gi|315590214|gb|ADU49511.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Intrasporangium calvum DSM 43043] Length = 157 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 43/114 (37%), Positives = 66/114 (57%) Query: 60 FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119 C +E++ A P YDLER+G ASPR +DV++V G +T MA LR+ Y+ MP Sbjct: 41 GSCNGCELEIVSAFGPVYDLERYGVRLVASPRHADVLLVTGPVTRNMADPLRKAYEAMPA 100 Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLL 173 P+ V+++G CA G + +Y V ++PVD + GCPP+ E +I + + Sbjct: 101 PKLVVALGDCARNCGIFAGAYGVFGAVSDVIPVDREISGCPPSPEEIIAALREV 154 >gi|23015497|ref|ZP_00055271.1| COG3260: Ni,Fe-hydrogenase III small subunit [Magnetospirillum magnetotacticum MS-1] Length = 180 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 49/116 (42%), Positives = 72/116 (62%), Gaps = 1/116 (0%) Query: 52 TGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASAL 110 + S+ + G C +E+ + P YDLERFG ASPR +DV++V G +T M AL Sbjct: 49 SLSIREVDAGSCNGCELEIHAVNHPIYDLERFGIRFVASPRHADVLLVTGPVTRNMEEAL 108 Query: 111 RRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL 166 RR + PEPR++++MG C GG + SY+VV G +VPVD+++PGCPP+ + Sbjct: 109 RRTVEATPEPRWIVAMGDCGKDGGCFAGSYAVVGGVSDVVPVDLHIPGCPPSPRQI 164 >gi|189425610|ref|YP_001952787.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Geobacter lovleyi SZ] gi|189421869|gb|ACD96267.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Geobacter lovleyi SZ] Length = 252 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 42/130 (32%), Positives = 72/130 (55%), Gaps = 1/130 (0%) Query: 49 WARTGSLMWMT-FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMA 107 + R+ ++ G C + + +DL RFG ASPR +D + V G ++ M Sbjct: 122 FGRSLKFREVSAGGCNACEADSNVLTTIGWDLGRFGIQFVASPRHADGIWVTGPVSENMR 181 Query: 108 SALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALI 167 AL + ++ +P P+ V++ G+CA GG + S + G D ++PVD+Y+PGCPP ++ Sbjct: 182 EALLKTWEAIPAPKIVVACGACAIAGGPFSGSPQISLGLDTLLPVDLYIPGCPPHPATIL 241 Query: 168 YGILLLQKKI 177 G+L LQ ++ Sbjct: 242 DGLLRLQGRL 251 >gi|209515026|ref|ZP_03263895.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Burkholderia sp. H160] gi|209504652|gb|EEA04639.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Burkholderia sp. H160] Length = 169 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 49/150 (32%), Positives = 75/150 (50%), Gaps = 1/150 (0%) Query: 23 DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLER 81 + + + + H G D L R + + G C +E+ + P Y++E Sbjct: 14 PDESAPAAEDAWHHGERQLRQDILDLLGRALCIRQIDAGSCNGCELEIHALNNPYYNIEG 73 Query: 82 FGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYS 141 G ASPR +D+++V G +T M +AL YD P P+ V++ G CA GG + SY+ Sbjct: 74 LGIKFVASPRHADLLLVTGPVTLNMRAALLAAYDATPAPKLVVAAGECACTGGIFADSYA 133 Query: 142 VVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171 V I+PVD+ +PGCPP L+ GIL Sbjct: 134 VCGPVSSILPVDVMIPGCPPPPVDLLRGIL 163 >gi|294646453|ref|ZP_06724094.1| NADH-quinone oxidoreductase, B subunit [Bacteroides ovatus SD CC 2a] gi|292638224|gb|EFF56601.1| NADH-quinone oxidoreductase, B subunit [Bacteroides ovatus SD CC 2a] Length = 115 Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 53/92 (57%), Positives = 75/92 (81%) Query: 87 RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGC 146 RASPRQ+D+++V GT+TNKMA L+R+YDQMP+P+YV+++G CA GG + SY VV G Sbjct: 2 RASPRQADMIMVCGTITNKMAPVLKRLYDQMPDPKYVVAVGGCAVSGGPFKKSYHVVNGV 61 Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 D+I+PVD+Y+PGCPP EA YG++ LQ+K++ Sbjct: 62 DKILPVDVYIPGCPPRPEAFYYGMMQLQRKVK 93 >gi|221198810|ref|ZP_03571855.1| hydrogenase-4 component I [Burkholderia multivorans CGD2M] gi|221205071|ref|ZP_03578087.1| hydrogenase-4 component I [Burkholderia multivorans CGD2] gi|221174862|gb|EEE07293.1| hydrogenase-4 component I [Burkholderia multivorans CGD2] gi|221181261|gb|EEE13663.1| hydrogenase-4 component I [Burkholderia multivorans CGD2M] Length = 171 Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 43/123 (34%), Positives = 67/123 (54%), Gaps = 1/123 (0%) Query: 50 ARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108 R + + G C +E+ + P Y++E G ASPR +D+++V G +T M + Sbjct: 41 GRALCIRQIDAGSCNGCELEIHALNNPYYNIEGLGIKFVASPRHADLLLVTGPVTLNMKA 100 Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168 A+ YD P P+ V++ G CA GG + SY+V ++PVD+ +PGCPP L+ Sbjct: 101 AVLAAYDATPAPKLVVAAGECACTGGIFADSYAVCGPVSSVLPVDVTIPGCPPPPIDLLR 160 Query: 169 GIL 171 GIL Sbjct: 161 GIL 163 >gi|302039526|ref|YP_003799848.1| putative formate hydrogenlyase small subunit [Candidatus Nitrospira defluvii] gi|300607590|emb|CBK43923.1| putative Formate hydrogenlyase, small subunit [Candidatus Nitrospira defluvii] Length = 173 Score = 148 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 45/135 (33%), Positives = 76/135 (56%), Gaps = 1/135 (0%) Query: 42 SVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAG 100 ++++ + R+ ++ + G C +EM + P YD+ERFG ASPR +D ++V G Sbjct: 32 AIEKAKPFRRSMTIREVDTGSCNACEMEMNALANPVYDVERFGVHIAASPRHADALVVTG 91 Query: 101 TLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCP 160 +T M AL+ VY +P+ VI++G CA G + SY+V DR +PVD+ + GCP Sbjct: 92 PVTVNMERALKDVYKATADPKIVIALGDCAVNCGMFKGSYAVTGPVDRHIPVDVRISGCP 151 Query: 161 PTAEALIYGILLLQK 175 P ++ + L++ Sbjct: 152 PRPAEILAVLAKLRQ 166 >gi|295699055|ref|YP_003606948.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Burkholderia sp. CCGE1002] gi|295438268|gb|ADG17437.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Burkholderia sp. CCGE1002] Length = 169 Score = 148 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 47/131 (35%), Positives = 69/131 (52%), Gaps = 1/131 (0%) Query: 42 SVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAG 100 D L R + + G C +E+ + P Y++E G ASPR +D+++V G Sbjct: 33 REDILDLLGRALCIRQIDAGSCNGCELEIHALNNPYYNIEGLGIKFVASPRHADLLLVTG 92 Query: 101 TLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCP 160 +T M +AL YD P P+ V++ G CA GG + SY+V I+PVD+ +PGCP Sbjct: 93 PVTLNMRAALLAAYDATPAPKLVVAAGECACTGGIFANSYAVCGPVSSILPVDVTIPGCP 152 Query: 161 PTAEALIYGIL 171 P L+ GIL Sbjct: 153 PPPIDLLRGIL 163 >gi|296161106|ref|ZP_06843916.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Burkholderia sp. Ch1-1] gi|295888629|gb|EFG68437.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Burkholderia sp. Ch1-1] Length = 176 Score = 148 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 43/127 (33%), Positives = 68/127 (53%), Gaps = 1/127 (0%) Query: 50 ARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108 R + + G C +E+ S P Y++E G ASPR +D+++V G LT M Sbjct: 41 GRALCIREIDAGSCNGCELEINALSNPYYNIEGLGIRIVASPRHADMLLVTGPLTLNMRE 100 Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168 A+ + Y+ P P+ V++ G CA GG + SY+V ++PVD+ +PGCPP ++ Sbjct: 101 AVWQAYEATPHPKLVVAAGECACTGGMFRDSYAVCGPLSTLLPVDVTIPGCPPPPIDILR 160 Query: 169 GILLLQK 175 GIL + Sbjct: 161 GILTALR 167 >gi|323141862|ref|ZP_08076723.1| 4Fe-4S binding domain protein [Phascolarctobacterium sp. YIT 12067] gi|322413609|gb|EFY04467.1| 4Fe-4S binding domain protein [Phascolarctobacterium sp. YIT 12067] Length = 240 Score = 148 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 52/132 (39%), Positives = 74/132 (56%), Gaps = 1/132 (0%) Query: 50 ARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108 R+ + + G C E+ S P YDL R+G A ASPR +D+++V G +T + Sbjct: 108 GRSLHVRHLDAGSCNACDFELGAMSNPVYDLHRYGIAFVASPRHADMLMVTGVVTRNLEQ 167 Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168 ALR YD MPEP+ V++ G+CA GG Y +Y+VV +VPVDI VPGCPP A+I Sbjct: 168 ALRMTYDAMPEPKMVMACGACACGGETYGSTYAVVGRAADVVPVDIAVPGCPPRPAAIIV 227 Query: 169 GILLLQKKIRRV 180 + ++ Sbjct: 228 ALCAAADMLKER 239 >gi|167819736|ref|ZP_02451416.1| putative hydrogenase subunit [Burkholderia pseudomallei 91] Length = 172 Score = 148 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 44/128 (34%), Positives = 68/128 (53%), Gaps = 1/128 (0%) Query: 50 ARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108 R + + G C +E+ P Y++E G ASPR +D++++ G LT M Sbjct: 41 GRALCIRAIDAGSCNGCELELHALGNPYYNIESLGIKFVASPRHADMLLITGPLTLNMRD 100 Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168 A+R YD P P+ V++ G CA GG + SY+V + +VPVD+ +PGCPP L+ Sbjct: 101 AVRLAYDATPAPKLVVAAGDCACTGGVFAGSYAVCGPIETLVPVDVAIPGCPPRPIELLR 160 Query: 169 GILLLQKK 176 GI ++ Sbjct: 161 GIRGALER 168 >gi|326483737|gb|EGE07747.1| NADH dehydrogenase beta subunit [Trichophyton equinum CBS 127.97] Length = 147 Score = 148 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 63/128 (49%), Positives = 79/128 (61%) Query: 17 CSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPR 76 E+++ E T ++T DQ+ WAR GSL +TFGLACC VEMM SMPR Sbjct: 3 ARPERLEVPLPSQGEEPTPLRHILTKFDQVANWARQGSLWPLTFGLACCGVEMMAVSMPR 62 Query: 77 YDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY 136 YDL+R G RASPRQ+DV+IV+GT+TNKM ALR +YDQMP+P++V S G Sbjct: 63 YDLDRMGIIYRASPRQADVLIVSGTVTNKMGPALRLLYDQMPDPKWVTSCGRVCAWMSAD 122 Query: 137 HYSYSVVR 144 S SV Sbjct: 123 GRSVSVWD 130 >gi|53722170|ref|YP_111155.1| hydrogenase/oxidoreductase subunit [Burkholderia pseudomallei K96243] gi|126443278|ref|YP_001062608.1| putative hydrogenase subunit [Burkholderia pseudomallei 668] gi|126457616|ref|YP_001075561.1| putative hydrogenase subunit [Burkholderia pseudomallei 1106a] gi|134283533|ref|ZP_01770233.1| putative hydrogenase subunit [Burkholderia pseudomallei 305] gi|167723605|ref|ZP_02406841.1| putative hydrogenase subunit [Burkholderia pseudomallei DM98] gi|167849586|ref|ZP_02475094.1| putative hydrogenase subunit [Burkholderia pseudomallei B7210] gi|167906546|ref|ZP_02493751.1| putative hydrogenase subunit [Burkholderia pseudomallei NCTC 13177] gi|167922746|ref|ZP_02509837.1| putative hydrogenase subunit [Burkholderia pseudomallei BCC215] gi|217418381|ref|ZP_03449888.1| putative hydrogenase subunit [Burkholderia pseudomallei 576] gi|226200219|ref|ZP_03795764.1| putative hydrogenase subunit [Burkholderia pseudomallei Pakistan 9] gi|237510550|ref|ZP_04523265.1| formate hydrogenlyase subunit 7 [Burkholderia pseudomallei MSHR346] gi|242311023|ref|ZP_04810040.1| putative hydrogenase subunit [Burkholderia pseudomallei 1106b] gi|254190228|ref|ZP_04896737.1| putative hydrogenase subunit [Burkholderia pseudomallei Pasteur 52237] gi|254193464|ref|ZP_04899898.1| putative hydrogenase subunit [Burkholderia pseudomallei S13] gi|254262469|ref|ZP_04953334.1| putative hydrogenase subunit [Burkholderia pseudomallei 1710a] gi|52212584|emb|CAH38610.1| putative hydrogenase/oxidoreductase subunit [Burkholderia pseudomallei K96243] gi|126222769|gb|ABN86274.1| putative hydrogenase subunit [Burkholderia pseudomallei 668] gi|126231384|gb|ABN94797.1| putative hydrogenase subunit [Burkholderia pseudomallei 1106a] gi|134245282|gb|EBA45376.1| putative hydrogenase subunit [Burkholderia pseudomallei 305] gi|157937905|gb|EDO93575.1| putative hydrogenase subunit [Burkholderia pseudomallei Pasteur 52237] gi|169650217|gb|EDS82910.1| putative hydrogenase subunit [Burkholderia pseudomallei S13] gi|217397685|gb|EEC37700.1| putative hydrogenase subunit [Burkholderia pseudomallei 576] gi|225927727|gb|EEH23769.1| putative hydrogenase subunit [Burkholderia pseudomallei Pakistan 9] gi|235002755|gb|EEP52179.1| formate hydrogenlyase subunit 7 [Burkholderia pseudomallei MSHR346] gi|242134262|gb|EES20665.1| putative hydrogenase subunit [Burkholderia pseudomallei 1106b] gi|254213471|gb|EET02856.1| putative hydrogenase subunit [Burkholderia pseudomallei 1710a] Length = 172 Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats. Identities = 44/128 (34%), Positives = 68/128 (53%), Gaps = 1/128 (0%) Query: 50 ARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108 R + + G C +E+ P Y++E G ASPR +D++++ G LT M Sbjct: 41 GRALCIRAIDAGSCNGCELELHALGNPYYNIEGLGIKFVASPRHADMLLITGPLTLNMRD 100 Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168 A+R YD P P+ V++ G CA GG + SY+V + +VPVD+ +PGCPP L+ Sbjct: 101 AVRLAYDATPAPKLVVAAGDCACTGGVFAGSYAVCGPIETLVPVDVAIPGCPPRPIELLR 160 Query: 169 GILLLQKK 176 GI ++ Sbjct: 161 GIRGALER 168 >gi|239616971|ref|YP_002940293.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Kosmotoga olearia TBF 19.5.1] gi|239505802|gb|ACR79289.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Kosmotoga olearia TBF 19.5.1] Length = 137 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 48/129 (37%), Positives = 72/129 (55%), Gaps = 3/129 (2%) Query: 52 TGSLMWMT---FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108 SL C +E++ PRYDLERFG S R +DV++V G K++ Sbjct: 9 KRSLWVFHVSASPCNNCDIEILDMLTPRYDLERFGIKLVGSVRHADVLLVTGMGGCKVSE 68 Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168 + R+Y+Q P+P +VI++G+C G + SY+ DR VPVD+Y+PGCPP E +I Sbjct: 69 RVIRIYNQAPKPVFVIAVGTCPVAGATFKESYTRCGPLDRFVPVDLYIPGCPPKPETMIA 128 Query: 169 GILLLQKKI 177 G+ L ++ Sbjct: 129 GLSELLGRL 137 >gi|149280569|ref|ZP_01886685.1| NADH dehydrogenase I, chain B [Pedobacter sp. BAL39] gi|149228684|gb|EDM34087.1| NADH dehydrogenase I, chain B [Pedobacter sp. BAL39] Length = 128 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 51/113 (45%), Positives = 76/113 (67%), Gaps = 2/113 (1%) Query: 73 SMPRYDLERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCAN 131 YD RFG SPRQ+D+++V GT+ KM+ L++VY QM EPR+VI++G+CA+ Sbjct: 1 MGSHYDFGRFGSERLSFSPRQADLLMVMGTIAKKMSPVLKQVYLQMAEPRWVIAVGACAS 60 Query: 132 GGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 GG + +YSV++G D I+PVD+YVPGCPP EA++ G +Q+ +R + Sbjct: 61 SGGIF-DTYSVLQGIDEIIPVDVYVPGCPPRPEAILDGFGKIQELVRNESGRR 112 >gi|45359024|ref|NP_988581.1| energy conserving hydrogenase A small subunit [Methanococcus maripaludis S2] gi|45047899|emb|CAF31017.1| energy conserving hydrogenase A small subunit [Methanococcus maripaludis S2] Length = 156 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 45/152 (29%), Positives = 81/152 (53%), Gaps = 16/152 (10%) Query: 46 LVTWARTGSL---MWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL 102 + + R S+ + T G C +E++ PRYD+E++G +PR++DV++V G + Sbjct: 2 IKDFVRKRSINVCLVNTGGCNGCDIEIVSCLAPRYDIEQYGIYVHNNPREADVLVVTGPV 61 Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162 T L +Y++ PEP+ VI++G+CA GG + + + D+++PVD +PGCPP Sbjct: 62 TGAWEKRLLEIYEKTPEPKIVIAVGACALSGGIFKEGH-IHGPVDKVIPVDAKLPGCPPR 120 Query: 163 AEALIYGIL------------LLQKKIRRVGN 182 +I ++ LL +K++ N Sbjct: 121 PSEIISAVVSIAPDALAAKEKLLNQKLKEEKN 152 >gi|152990463|ref|YP_001356185.1| Ni-Fe hydrogenase, small subunit HycG [Nitratiruptor sp. SB155-2] gi|151422324|dbj|BAF69828.1| Ni-Fe hydrogenase, small subunit HycG [Nitratiruptor sp. SB155-2] Length = 167 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 50/165 (30%), Positives = 85/165 (51%), Gaps = 14/165 (8%) Query: 8 QKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCA 66 +K I Q+S + E+++ + SEI K ++ + ++ + G C Sbjct: 10 RKGIQTQNSWADEELETIKKSLKSEIGKK------------FSGSLAIRMVDSGSCNACE 57 Query: 67 VEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISM 126 E S P YDLER G ASPR +D+++V+G +T M L Y+Q+P P++VI++ Sbjct: 58 AECNALSNPYYDLERLGIRFVASPRHADILLVSGVVTFNMLPHLLDAYEQLPSPKWVITL 117 Query: 127 GSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171 G C G + S+++ +PV ++PGCPPT + ++ G L Sbjct: 118 GDC-TQGTLFKDSFAIKGPVKEHLPVAYHIPGCPPTPDEIVRGFL 161 >gi|167742571|ref|ZP_02415345.1| putative hydrogenase subunit [Burkholderia pseudomallei 14] gi|167914902|ref|ZP_02501993.1| putative hydrogenase subunit [Burkholderia pseudomallei 112] gi|254300487|ref|ZP_04967933.1| putative hydrogenase subunit [Burkholderia pseudomallei 406e] gi|157810342|gb|EDO87512.1| putative hydrogenase subunit [Burkholderia pseudomallei 406e] Length = 172 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 44/128 (34%), Positives = 68/128 (53%), Gaps = 1/128 (0%) Query: 50 ARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108 R + + G C +E+ P Y++E G ASPR +D++++ G LT M Sbjct: 41 GRALCIRAIDAGSCNGCELELHALGNPYYNIEGLGIKFVASPRHADMLLITGPLTLNMRD 100 Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168 A+R YD P P+ V++ G CA GG + SY+V + +VPVD+ +PGCPP L+ Sbjct: 101 AVRLAYDATPAPKLVVAAGDCACTGGVFAGSYAVCGPIETLVPVDVAIPGCPPRPIELLR 160 Query: 169 GILLLQKK 176 GI ++ Sbjct: 161 GIRGALER 168 >gi|327304110|ref|XP_003236747.1| NADH-ubiquinone oxidoreductase subunit B [Trichophyton rubrum CBS 118892] gi|326462089|gb|EGD87542.1| NADH-ubiquinone oxidoreductase subunit B [Trichophyton rubrum CBS 118892] Length = 182 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 58/108 (53%), Positives = 75/108 (69%) Query: 17 CSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPR 76 ++++ E T ++T DQ+ WAR GSL +TFGLACC VEMM SMPR Sbjct: 60 ARPKRLEVPLPSQGEEPTPLRHILTKFDQVANWARQGSLWPLTFGLACCGVEMMAVSMPR 119 Query: 77 YDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 YDL+R G RASPRQ+DV+IV+GT+TNKM ALR +YDQMP+P++VI Sbjct: 120 YDLDRMGIIYRASPRQADVLIVSGTVTNKMGPALRLLYDQMPDPKWVI 167 >gi|296134448|ref|YP_003641695.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Thermincola sp. JR] gi|296033026|gb|ADG83794.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Thermincola potens JR] Length = 143 Score = 147 bits (371), Expect = 6e-34, Method: Composition-based stats. Identities = 49/128 (38%), Positives = 74/128 (57%), Gaps = 4/128 (3%) Query: 52 TGSLMWM---TFGLACCAVEMMQASM-PRYDLERFGFAPRASPRQSDVMIVAGTLTNKMA 107 T S C VE+ ++ PRYD+ER G SP+ +D+++V G LT K+ Sbjct: 10 TRSPWLYRINAGSCNGCDVELATTALIPRYDVERLGCKYCGSPKHADIVLVTGPLTAKVK 69 Query: 108 SALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALI 167 + RVYD++P+P+ V+++G C GG + SY+V D +PVD+ VPGCPP +A+I Sbjct: 70 DKVLRVYDEIPDPKVVVAVGICPVSGGVFRDSYAVHGPVDSYIPVDVNVPGCPPRPQAII 129 Query: 168 YGILLLQK 175 GI+ K Sbjct: 130 DGIVEAIK 137 >gi|83717494|ref|YP_439462.1| formate hydrogenlyase subunit 7 [Burkholderia thailandensis E264] gi|167577905|ref|ZP_02370779.1| Formate hydrogenlyase subunit 7 [Burkholderia thailandensis TXDOH] gi|167616030|ref|ZP_02384665.1| Formate hydrogenlyase subunit 7 [Burkholderia thailandensis Bt4] gi|257142585|ref|ZP_05590847.1| formate hydrogenlyase subunit 7 [Burkholderia thailandensis E264] gi|83651319|gb|ABC35383.1| Formate hydrogenlyase subunit 7 [Burkholderia thailandensis E264] Length = 174 Score = 147 bits (371), Expect = 6e-34, Method: Composition-based stats. Identities = 44/130 (33%), Positives = 69/130 (53%), Gaps = 1/130 (0%) Query: 50 ARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108 R + + G C +E+ P Y++E G ASPR +D++++ G LT M Sbjct: 41 GRALCIRAIDAGSCNGCELELNALGNPYYNIEGLGIKFVASPRHADMLLITGPLTLNMRD 100 Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168 A+R YD P P+ V++ G CA GG + SY+V + +VPVD+ + GCPP L+ Sbjct: 101 AVRLAYDATPAPKLVVAAGDCACTGGVFAGSYAVCGPVETLVPVDVAIAGCPPRPIDLLR 160 Query: 169 GILLLQKKIR 178 GI +++R Sbjct: 161 GIRGALERVR 170 >gi|86160078|ref|YP_466863.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Anaeromyxobacter dehalogenans 2CP-C] gi|85776589|gb|ABC83426.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Anaeromyxobacter dehalogenans 2CP-C] Length = 256 Score = 147 bits (371), Expect = 7e-34, Method: Composition-based stats. Identities = 47/133 (35%), Positives = 74/133 (55%), Gaps = 4/133 (3%) Query: 50 ARTGSLMWMT-FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108 R+ L ++ G + C E+ + ++D+ RFG ASPR +D ++V G +T M Sbjct: 124 GRSLKLRQVSAGGCSGCEAELNASGNIQFDVGRFGVQFVASPRHADGLVVTGPVTENMRL 183 Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCD---RIVPVDIYVPGCPPTAEA 165 ALR+ ++ +P PR VI++G+CA GG + S G +PVD+YVPGCPP Sbjct: 184 ALRQTWEAVPAPRIVIAVGACAISGGPFAGSPVTCGGAAAALDGIPVDLYVPGCPPHPIT 243 Query: 166 LIYGILLLQKKIR 178 + GIL L +++ Sbjct: 244 FLDGILRLLGRLK 256 >gi|113868177|ref|YP_726666.1| formate hydrogenlyase subunit 7 [Ralstonia eutropha H16] gi|113526953|emb|CAJ93298.1| formate hydrogenlyase subunit 7 [Ralstonia eutropha H16] Length = 174 Score = 147 bits (371), Expect = 7e-34, Method: Composition-based stats. Identities = 42/125 (33%), Positives = 65/125 (52%), Gaps = 3/125 (2%) Query: 60 FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119 C +E+ P Y++E G ASPR +D+++V G ++ M AL R Y PE Sbjct: 52 GSCNGCELEIHALGNPYYNIEGLGIKFVASPRHADMLLVTGPVSRHMEEALLRTYAATPE 111 Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179 P+ V+++G C GG + SY+ ++PVDI VPGCPP ++ IL +R+ Sbjct: 112 PKLVVAIGDCGCTGGIFGESYASCGRVANVIPVDITVPGCPPPPIEILRAIL---SAVRQ 168 Query: 180 VGNVK 184 G + Sbjct: 169 TGATR 173 >gi|258514106|ref|YP_003190328.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfotomaculum acetoxidans DSM 771] gi|257777811|gb|ACV61705.1| Hydrogenase, small subunit-like protein [Desulfotomaculum acetoxidans DSM 771] Length = 236 Score = 147 bits (371), Expect = 7e-34, Method: Composition-based stats. Identities = 46/122 (37%), Positives = 75/122 (61%), Gaps = 1/122 (0%) Query: 51 RTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASA 109 R+ + ++ G C E+ + P YD++++G ASPR +D+++V G +T + A Sbjct: 109 RSLHIRYVDAGACNGCDFEINSMTNPVYDIQQYGVDFVASPRHADMLLVTGVVTRNLEIA 168 Query: 110 LRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYG 169 L + Y+ P P V+++G+CA GGG + +Y+ G D+ +PVD+YVPGCPPT +I G Sbjct: 169 LHKTYEACPRPALVVAVGACACGGGVFKEAYASGGGVDKFLPVDVYVPGCPPTPAQIIKG 228 Query: 170 IL 171 IL Sbjct: 229 IL 230 >gi|308271021|emb|CBX27631.1| hypothetical protein N47_H24530 [uncultured Desulfobacterium sp.] Length = 263 Score = 146 bits (370), Expect = 8e-34, Method: Composition-based stats. Identities = 45/131 (34%), Positives = 71/131 (54%), Gaps = 1/131 (0%) Query: 49 WARTGSLMWMT-FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMA 107 + R+ L ++ G C + S +D+ RFG ASPR +D +++ G +T M Sbjct: 125 FGRSLKLRQVSAGGCNACEADSNVLSTLAWDMGRFGIQFVASPRHADGLLITGPVTENMR 184 Query: 108 SALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALI 167 AL + Y +PEP+ VI++GSCA GG + G IVPVD+++PGCPP ++ Sbjct: 185 IALEKTYAAVPEPKIVIAVGSCAISGGPFIDHPEQHNGAMDIVPVDLFIPGCPPHPLTIL 244 Query: 168 YGILLLQKKIR 178 G+L +I+ Sbjct: 245 DGLLRFIGRIK 255 >gi|167828121|ref|ZP_02459592.1| putative hydrogenase subunit [Burkholderia pseudomallei 9] Length = 165 Score = 146 bits (370), Expect = 9e-34, Method: Composition-based stats. Identities = 44/122 (36%), Positives = 66/122 (54%), Gaps = 1/122 (0%) Query: 50 ARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108 R + + G C +E+ P Y++E G ASPR +D++++ G LT M Sbjct: 41 GRALCIRAIDAGSCNGCELELHALGNPYYNIEGLGIKFVASPRHADMLLITGPLTLNMRD 100 Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168 A+R YD P P+ V++ G CA GG + SY+V + +VPVD+ +PGCPP L+ Sbjct: 101 AVRLAYDATPAPKLVVAAGDCACTGGVFAGSYAVCGPIETLVPVDVAIPGCPPRPIELLR 160 Query: 169 GI 170 GI Sbjct: 161 GI 162 >gi|118578783|ref|YP_900033.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Pelobacter propionicus DSM 2379] gi|118501493|gb|ABK97975.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Pelobacter propionicus DSM 2379] Length = 252 Score = 146 bits (370), Expect = 9e-34, Method: Composition-based stats. Identities = 46/136 (33%), Positives = 73/136 (53%), Gaps = 1/136 (0%) Query: 44 DQLVTWARTGSLMWMT-FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL 102 + L + R+ L ++ G C + S +DL RFG ASPR +D + + G + Sbjct: 117 ELLRLYGRSLKLREVSAGGCNACEADTNVLSTIGWDLGRFGIQFVASPRHADGLFITGPV 176 Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162 + M AL Y +P+P+ VI G+CA GG + V G D ++ VD+Y+PGCPP+ Sbjct: 177 SENMRLALLDTYAAIPDPKLVIVTGACAINGGPFKDHDEVCNGADGLLAVDLYIPGCPPS 236 Query: 163 AEALIYGILLLQKKIR 178 ++ G+L L ++IR Sbjct: 237 PLTILDGLLRLIRRIR 252 >gi|167565804|ref|ZP_02358720.1| putative hydrogenase subunit [Burkholderia oklahomensis EO147] Length = 174 Score = 146 bits (370), Expect = 9e-34, Method: Composition-based stats. Identities = 44/122 (36%), Positives = 66/122 (54%), Gaps = 1/122 (0%) Query: 50 ARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108 R + + G C +E+ P Y++E G ASPR +D++++ G LT M Sbjct: 41 GRALCIRAIDVGSCNGCELELHALGNPYYNIEGLGIKFVASPRHADMLLITGPLTLNMRD 100 Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168 A+R YD P P+ V++ G CA GG + SY+V ++ VPVD+ +PGCPP L+ Sbjct: 101 AVRLAYDATPAPKLVVAAGDCACTGGVFADSYAVCGPLEKRVPVDLTIPGCPPRPIDLLC 160 Query: 169 GI 170 GI Sbjct: 161 GI 162 >gi|167589517|ref|ZP_02381905.1| Putative hydrogenase/oxidoreductase subunit [Burkholderia ubonensis Bu] Length = 169 Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 44/123 (35%), Positives = 67/123 (54%), Gaps = 1/123 (0%) Query: 50 ARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108 R + + G C +E+ + P Y++E G ASPR +D+++V G +T M + Sbjct: 41 GRALCIRQIDAGSCNGCELEIHALNNPVYNIEGLGIKFVASPRHADLLLVTGPVTLNMRA 100 Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168 A+ YD P P+ V++ G CA GG + SY+V I+PVD+ +PGCPP L+ Sbjct: 101 AVLAAYDATPSPKLVVAAGECACTGGIFADSYAVCGPVSSILPVDVTIPGCPPPPVDLLR 160 Query: 169 GIL 171 GIL Sbjct: 161 GIL 163 >gi|198283919|ref|YP_002220240.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Acidithiobacillus ferrooxidans ATCC 53993] gi|218667213|ref|YP_002426553.1| hydrogenase-4, I subunit [Acidithiobacillus ferrooxidans ATCC 23270] gi|198248440|gb|ACH84033.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Acidithiobacillus ferrooxidans ATCC 53993] gi|218519426|gb|ACK80012.1| hydrogenase-4, I subunit [Acidithiobacillus ferrooxidans ATCC 23270] Length = 165 Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 47/114 (41%), Positives = 70/114 (61%) Query: 60 FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119 C +E+ P Y LE+ GF ASPR +DV+ V G +T M +AL+ ++ PE Sbjct: 45 GSCNGCELELNALGGPHYGLEQAGFHFTASPRHADVLTVTGPVTRHMVAALQDCHNATPE 104 Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLL 173 PR VI++G CA GGG + SY+V+ ++PVD+ +PGCPP +AL+ G+L + Sbjct: 105 PRRVIAVGDCACGGGAFRGSYAVMGSAAEVLPVDLQIPGCPPDPDALLRGLLQV 158 >gi|147920954|ref|YP_685238.1| [NiFe]-hydrogenase, small subunit (EchC-like) [uncultured methanogenic archaeon RC-I] gi|110620634|emb|CAJ35912.1| [NiFe]-hydrogenase, small subunit (EchC-like) [uncultured methanogenic archaeon RC-I] Length = 135 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 48/129 (37%), Positives = 72/129 (55%), Gaps = 5/129 (3%) Query: 52 TGSLMWMT---FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108 S G C +E++ + PRYDLER G SPR +DV++V G + Sbjct: 5 KRSPWVYHAHAGGCVGCDIELVASMGPRYDLERLGVRLVPSPRYADVLLVTGPVPLHTKP 64 Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHY--SYSVVRGCDRIVPVDIYVPGCPPTAEAL 166 L RVY Q PEP+ VI++G+C G + +YS+ D+I+PVD+ +PGCPP EA+ Sbjct: 65 FLERVYAQTPEPKRVIAIGACGCSCGVFIDDENYSIAGPVDKIIPVDVKIPGCPPKPEAI 124 Query: 167 IYGILLLQK 175 + GI+ + + Sbjct: 125 MEGIIKVLR 133 >gi|296081619|emb|CBI20624.3| unnamed protein product [Vitis vinifera] Length = 94 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 76/86 (88%), Positives = 81/86 (94%) Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155 MIVAGTLTNKMA ALR+VYDQMPEPR+V+SMGSCANGGGYYHYSYSVVRGCDRIVPVDIY Sbjct: 1 MIVAGTLTNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 60 Query: 156 VPGCPPTAEALIYGILLLQKKIRRVG 181 VPGCPPTAEAL+YG+L LQKKI R Sbjct: 61 VPGCPPTAEALLYGLLQLQKKINRRK 86 >gi|320450490|ref|YP_004202586.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, precursor [Thermus scotoductus SA-01] gi|320150659|gb|ADW22037.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, precursor [Thermus scotoductus SA-01] Length = 262 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 50/120 (41%), Positives = 77/120 (64%), Gaps = 2/120 (1%) Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 GLA + + P D+ RFGF ASPR +D ++V G ++ MA ALRR Y+ MPEP Sbjct: 138 GLADSEIAL--LGNPFNDMGRFGFQVVASPRHADALLVTGPVSRNMAEALRRTYEAMPEP 195 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 + V+++G+ A GG + S V+ G D++VPVD+YVPG PP A+++G++LL ++ + Sbjct: 196 KGVVAVGNEAISGGVFAGSPQVLSGVDQVVPVDVYVPGDPPRPGAILHGLMLLVGRMTQR 255 >gi|51244894|ref|YP_064778.1| hydrogenase, component I-formate hydrogenlyase subunit 7 [Desulfotalea psychrophila LSv54] gi|50875931|emb|CAG35771.1| related to hydrogenase, component I-formate hydrogenlyase subunit 7 [Desulfotalea psychrophila LSv54] Length = 248 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 41/124 (33%), Positives = 68/124 (54%), Gaps = 1/124 (0%) Query: 49 WARTGSLMWMT-FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMA 107 + R+ L ++ G C + + P +DL RFG ASPR +D + V G +++ M Sbjct: 121 FGRSLQLRQVSAGGCNSCEADTNVLNTPFFDLSRFGIDFVASPRHADGLHVTGPISHNMR 180 Query: 108 SALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALI 167 AL Y+ + P+ VI+ G C+ GG ++ S VV + ++PVD+Y+PGCPP + Sbjct: 181 QALITTYEAVASPKVVIASGCCSISGGPFYGSSEVVGDLNSLLPVDLYIPGCPPHPLTTL 240 Query: 168 YGIL 171 + +L Sbjct: 241 HALL 244 >gi|303325434|ref|ZP_07355877.1| hydrogenase subunit [Desulfovibrio sp. 3_1_syn3] gi|302863350|gb|EFL86281.1| hydrogenase subunit [Desulfovibrio sp. 3_1_syn3] Length = 271 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 45/120 (37%), Positives = 67/120 (55%), Gaps = 3/120 (2%) Query: 60 FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119 G C + YDL RFG ASPR +D ++V G +T M AL + MPE Sbjct: 151 GGCNACEADCNVLGTLVYDLGRFGIEFTASPRHADGLVVTGPVTENMRRALLDTWAAMPE 210 Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCD---RIVPVDIYVPGCPPTAEALIYGILLLQKK 176 PR ++++G+CA GG + S G D R+ PVD++VPGCPP +++ G+L L+++ Sbjct: 211 PRLLVAVGACAISGGLFRESPQCHGGLDGGGRLPPVDVFVPGCPPNPWSILDGLLSLRRR 270 >gi|291615014|ref|YP_003525171.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Sideroxydans lithotrophicus ES-1] gi|291585126|gb|ADE12784.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Sideroxydans lithotrophicus ES-1] Length = 171 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 41/124 (33%), Positives = 69/124 (55%), Gaps = 1/124 (0%) Query: 49 WARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMA 107 + ++ + G C +E+ + Y++E G ASPR +D+++V G ++ M Sbjct: 40 FGGALAIRQVDAGSCNGCELEIHAVNNAYYNIEGMGIKFVASPRHADLLLVTGPVSRHME 99 Query: 108 SALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALI 167 AL+R YD P+P+ V+++G CA GG + SY+ ++PVD+ V GCPP A++ Sbjct: 100 IALKRTYDATPDPKLVVAIGDCACDGGIFGESYASCGKVSNVIPVDVVVSGCPPAPTAIL 159 Query: 168 YGIL 171 GIL Sbjct: 160 QGIL 163 >gi|320101917|ref|YP_004177508.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Isosphaera pallida ATCC 43644] gi|319749199|gb|ADV60959.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Isosphaera pallida ATCC 43644] Length = 257 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 44/135 (32%), Positives = 74/135 (54%), Gaps = 1/135 (0%) Query: 44 DQLVTWARTGSLMWMT-FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL 102 L + R+ L ++ G C ++ + +DL RFG ASPR +D +++ G + Sbjct: 117 KALRLFGRSLKLRQVSAGGCNGCEADVNVLNTVVFDLGRFGIQFVASPRHADGLLITGPV 176 Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162 T M AL + ++ +P P+ VI++G+CA GG + G D ++PVD+Y+PGCPP Sbjct: 177 TKNMVLALEKSHEAVPAPKIVIAVGACAISGGPFAGHAEQSNGADDVLPVDLYIPGCPPH 236 Query: 163 AEALIYGILLLQKKI 177 ++ G+L L K+ Sbjct: 237 PLTILDGLLRLLDKL 251 >gi|206895842|ref|YP_002247251.1| hydrogenase-4 component I [Coprothermobacter proteolyticus DSM 5265] gi|206738459|gb|ACI17537.1| hydrogenase-4 component I [Coprothermobacter proteolyticus DSM 5265] Length = 157 Score = 146 bits (368), Expect = 1e-33, Method: Composition-based stats. Identities = 48/134 (35%), Positives = 74/134 (55%), Gaps = 5/134 (3%) Query: 53 GSLMWMT---FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASA 109 SL C +E++ A P+YD ERFG SPR +D+++ G +T + Sbjct: 8 KSLWIYHLNTGSCNGCDIEILAALTPKYDAERFGVKLVGSPRHADIIVATGPVTAVAKES 67 Query: 110 LRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYG 169 + RV DQ+PEP+ ++ +G C GG + YS+ D +VPVD+YV GCPP E ++ G Sbjct: 68 VLRVIDQVPEPKAIVVVGVCGITGGVFRGGYSIAGPLDTLVPVDVYVFGCPPKPEGIMVG 127 Query: 170 ILLLQK--KIRRVG 181 IL + +++R G Sbjct: 128 ILKAAEVLELKRKG 141 >gi|126465960|ref|YP_001041069.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Staphylothermus marinus F1] gi|126014783|gb|ABN70161.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Staphylothermus marinus F1] Length = 159 Score = 146 bits (368), Expect = 1e-33, Method: Composition-based stats. Identities = 49/141 (34%), Positives = 79/141 (56%), Gaps = 13/141 (9%) Query: 52 TGSLMWMT---FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108 S+ C +E++ A P +D+ERFG ASPR +D++++ G +T K Sbjct: 9 KKSIWVFHLNTGSCNACDIEILDALTPYFDVERFGIKLVASPRHADLVLLTGPITLKTLP 68 Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI--------VPVD--IYVPG 158 + +P PRYV+++G+CA GGG ++ SYSV+ G D + + +D +YVPG Sbjct: 69 KVINALRAVPRPRYVMAIGACAVGGGIWYDSYSVIGGVDELKKILEEYGIEIDKIVYVPG 128 Query: 159 CPPTAEALIYGILLLQKKIRR 179 CP EA+IYG+ LL +++ Sbjct: 129 CPARPEAIIYGVALLLGLVKQ 149 >gi|5734540|emb|CAB52769.1| hydrogenase small subunit [Methanothermobacter thermautotrophicus] Length = 148 Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 45/133 (33%), Positives = 74/133 (55%), Gaps = 4/133 (3%) Query: 43 VDQLVTWARTGSLMWM---TFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVA 99 +D L + R S+ T G C +E++ PRYDLE++G +PR++DV++V Sbjct: 2 LDALKSILRKTSIHVCLVNTGGCNGCDIEVLALLSPRYDLEQYGIYVHQNPREADVILVT 61 Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGCDRIVPVDIYVPG 158 G +T + L+R+Y + PEP+ V+++G+C G ++ SV +PVD+ VPG Sbjct: 62 GAVTEQWREKLQRIYSKAPEPKIVVALGNCPISGDVFNQEGGSVYAPVSDFIPVDVEVPG 121 Query: 159 CPPTAEALIYGIL 171 CPP ++ IL Sbjct: 122 CPPRPFEILEAIL 134 >gi|220918887|ref|YP_002494191.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Anaeromyxobacter dehalogenans 2CP-1] gi|219956741|gb|ACL67125.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Anaeromyxobacter dehalogenans 2CP-1] Length = 259 Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 46/133 (34%), Positives = 74/133 (55%), Gaps = 4/133 (3%) Query: 50 ARTGSLMWMT-FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108 R+ L ++ G + C E+ + ++D+ RFG ASPR +D +++ G +T M Sbjct: 127 GRSLKLRQVSAGGCSGCEAELNASGNIQFDVGRFGVQFVASPRHADGLVITGPVTENMRL 186 Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCD---RIVPVDIYVPGCPPTAEA 165 ALR+ ++ +P PR VI++G+CA GG + S G +PVD+YVPGCPP Sbjct: 187 ALRQTWEAVPAPRIVIAVGACAISGGPFAGSPVTCGGAAAALDGIPVDLYVPGCPPHPIT 246 Query: 166 LIYGILLLQKKIR 178 + GIL L +++ Sbjct: 247 FLDGILRLLGRLK 259 >gi|238508138|ref|XP_002385270.1| NADH dehydrogenase, putative [Aspergillus flavus NRRL3357] gi|220688789|gb|EED45141.1| NADH dehydrogenase, putative [Aspergillus flavus NRRL3357] Length = 94 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 66/89 (74%), Positives = 77/89 (86%) Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155 M+VAGT+TNKMA ALR+ YDQMP+P++VISMGSCANGGGYYHYSYSVVRG DRIVPVD+Y Sbjct: 1 MVVAGTVTNKMAPALRQCYDQMPDPKWVISMGSCANGGGYYHYSYSVVRGVDRIVPVDVY 60 Query: 156 VPGCPPTAEALIYGILLLQKKIRRVGNVK 184 +PGCPPT EA +YGI LQKK+R + Sbjct: 61 IPGCPPTPEAFLYGIFQLQKKMRHTKVTR 89 >gi|15678425|ref|NP_275540.1| formate hydrogenlyase, subunit 7 [Methanothermobacter thermautotrophicus str. Delta H] gi|2621459|gb|AAB84903.1| formate hydrogenlyase, subunit 7 [Methanothermobacter thermautotrophicus str. Delta H] Length = 148 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 45/135 (33%), Positives = 74/135 (54%), Gaps = 4/135 (2%) Query: 43 VDQLVTWARTGSLMWM---TFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVA 99 +D L + R S+ T G C +E++ PRYDLE++G +PR++DV++V Sbjct: 2 LDALKSILRKTSIHVCLVNTGGCNGCDIEVLALLSPRYDLEQYGIYVHQNPREADVILVT 61 Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGCDRIVPVDIYVPG 158 G +T + L+R+Y + PEP+ V+++G+C G ++ SV +PVD VPG Sbjct: 62 GAVTEQWREKLQRIYRKAPEPKIVVALGNCPISGDVFNQEGGSVYAPVSDFIPVDAEVPG 121 Query: 159 CPPTAEALIYGILLL 173 CPP ++ IL + Sbjct: 122 CPPRPSEILEAILAV 136 >gi|251792877|ref|YP_003007603.1| hydrogenase-4 subunit I [Aggregatibacter aphrophilus NJ8700] gi|247534270|gb|ACS97516.1| hydrogenase-4 component I [Aggregatibacter aphrophilus NJ8700] Length = 258 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 52/150 (34%), Positives = 78/150 (52%), Gaps = 5/150 (3%) Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQ 92 + L R+ + + G C +E+ P +D ERFG ASPR Sbjct: 18 IDENIAKMKQALLKNIQRSAYVYRVDCGGCNGCEIEIFSTITPVFDAERFGIKVVASPRH 77 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152 +D+++ G++T M + R Y P+P+ I+ G+C GGG +H Y V G D+IVPV Sbjct: 78 ADILLFTGSVTRAMRTPAMRAYQAAPDPKICIAYGACGCGGGIFHDLYCVWGGSDQIVPV 137 Query: 153 DIYVPGCPPTAEALIYGILL----LQKKIR 178 D+Y+PGCPPT A IYG + L +K++ Sbjct: 138 DVYIPGCPPTPAATIYGFAMALGLLDQKLK 167 >gi|134045163|ref|YP_001096649.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Methanococcus maripaludis C5] gi|132662788|gb|ABO34434.1| membrane-bound hydrogenase subunit ehaN [Methanococcus maripaludis C5] Length = 156 Score = 145 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 45/152 (29%), Positives = 80/152 (52%), Gaps = 16/152 (10%) Query: 46 LVTWARTGSL---MWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL 102 + + R S+ + T G C +E++ PRYD+E++G +PR++DV++V G + Sbjct: 2 IKDFVRKRSINVCLVNTGGCNGCDIEVVSCLAPRYDIEQYGIYVHNNPREADVLVVTGPV 61 Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162 T L +Y++ PEP+ VI++G+CA GG + + + D ++PVD +PGCPP Sbjct: 62 TGAWEKRLLEIYEKTPEPKIVIAVGACALSGGIFKEGH-IHGPVDSVIPVDAKLPGCPPR 120 Query: 163 AEALIYGIL------------LLQKKIRRVGN 182 +I ++ LL +K++ N Sbjct: 121 PSEIISAVVTIAPDALAAKEKLLNQKLKEEKN 152 >gi|159905595|ref|YP_001549257.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanococcus maripaludis C6] gi|159887088|gb|ABX02025.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanococcus maripaludis C6] Length = 156 Score = 145 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 45/152 (29%), Positives = 80/152 (52%), Gaps = 16/152 (10%) Query: 46 LVTWARTGSL---MWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL 102 + + R S+ + T G C +E++ PRYD+E++G +PR++DV++V G + Sbjct: 2 IKDFVRKRSINVCLVNTGGCNGCDIEVVSCLAPRYDIEQYGIYVHNNPREADVLVVTGPV 61 Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162 T L +Y++ PEP+ VI++G+CA GG + + + D ++PVD +PGCPP Sbjct: 62 TGAWEKRLLEIYEKTPEPKIVIAVGACALSGGIFKEGH-IHGPVDSVIPVDAKLPGCPPR 120 Query: 163 AEALIYGIL------------LLQKKIRRVGN 182 +I ++ LL +K++ N Sbjct: 121 PSEIISAVVAIAPDALAAKEKLLNQKLKEEKN 152 >gi|313904888|ref|ZP_07838260.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Eubacterium cellulosolvens 6] gi|313470321|gb|EFR65651.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Eubacterium cellulosolvens 6] Length = 156 Score = 145 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 43/132 (32%), Positives = 73/132 (55%), Gaps = 3/132 (2%) Query: 52 TGSLMWMTF---GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108 S + + C +E++ + P YD ERFG P Q+D+ +V G + ++ Sbjct: 5 KRSPWLLHYDGASCNGCDIEVLASLTPVYDAERFGVENTGDPMQADIFLVTGGINDQCYD 64 Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168 ++++YDQMP P+ V+++G CA GG + +Y + G D +PVDIYVPGC +A+I Sbjct: 65 VVKQLYDQMPRPKVVVAVGVCACTGGIFKDAYGIHGGVDTCIPVDIYVPGCAARPQAIID 124 Query: 169 GILLLQKKIRRV 180 GI+ + ++ Sbjct: 125 GIVKAVELFQKR 136 >gi|197124107|ref|YP_002136058.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Anaeromyxobacter sp. K] gi|196173956|gb|ACG74929.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Anaeromyxobacter sp. K] Length = 256 Score = 145 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 46/133 (34%), Positives = 74/133 (55%), Gaps = 4/133 (3%) Query: 50 ARTGSLMWMT-FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108 R+ L ++ G + C E+ + ++D+ RFG ASPR +D +++ G +T M Sbjct: 124 GRSLKLRQVSAGGCSGCEAELNASGNIQFDVGRFGVQFVASPRHADGLVITGPVTENMRL 183 Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCD---RIVPVDIYVPGCPPTAEA 165 ALR+ ++ +P PR VI++G+CA GG + S G +PVD+YVPGCPP Sbjct: 184 ALRQTWEAVPAPRIVIAVGACAISGGPFAGSPVTCGGAAAALDGIPVDLYVPGCPPHPIT 243 Query: 166 LIYGILLLQKKIR 178 + GIL L +++ Sbjct: 244 FLDGILRLLGRLK 256 >gi|224373087|ref|YP_002607459.1| hydrogenase-4 component I [Nautilia profundicola AmH] gi|223589382|gb|ACM93118.1| hydrogenase-4 component I [Nautilia profundicola AmH] Length = 142 Score = 145 bits (365), Expect = 3e-33, Method: Composition-based stats. Identities = 46/131 (35%), Positives = 72/131 (54%), Gaps = 5/131 (3%) Query: 56 MWMTFGLACCAVEMMQASM-PRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVY 114 T C VE+ +M PRYD+ER G SP+ +D+++V G +T + L V Sbjct: 12 RINTGSCNGCDVELATTAMIPRYDVERLGCRYTGSPKHADILLVTGPITARSKPYLLEVL 71 Query: 115 DQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLL- 173 D++P P V+++G+C G + SY++ DR V VD+ VPGCPP +A+I G+ Sbjct: 72 DELPNPFVVVAVGTCPTSCGIFRDSYAIEGPLDRYVKVDVNVPGCPPRPQAIIDGVAKAL 131 Query: 174 ---QKKIRRVG 181 ++KIR + Sbjct: 132 EIWKQKIRDMK 142 >gi|218884266|ref|YP_002428648.1| NADH-quinone oxidoreductase, B subunit [Desulfurococcus kamchatkensis 1221n] gi|218765882|gb|ACL11281.1| NADH-quinone oxidoreductase, B subunit [Desulfurococcus kamchatkensis 1221n] Length = 337 Score = 145 bits (365), Expect = 4e-33, Method: Composition-based stats. Identities = 48/138 (34%), Positives = 75/138 (54%) Query: 43 VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL 102 ++++ WA SL + + AC AVE M D ER+G+ P SPRQSD+ I G L Sbjct: 2 LERIARWAYARSLWMIHYCSACGAVEFPPLVMAPLDWERYGYMPTPSPRQSDLYIGMGYL 61 Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162 T K + +Y QMPEP+ V++ +C + GG Y SY+ + D + V+ +VPGC P Sbjct: 62 TKKTVKLVLNMYRQMPEPKLVLAGCNCTSTGGPYWDSYATYKRLDDFIEVEGWVPGCMPM 121 Query: 163 AEALIYGILLLQKKIRRV 180 + + I ++K + + Sbjct: 122 PDDYLSMIEYVRKDLGKR 139 >gi|304314558|ref|YP_003849705.1| energy-converting hydrogenase A, subunit N [Methanothermobacter marburgensis str. Marburg] gi|302588017|gb|ADL58392.1| energy-converting hydrogenase A, subunit N [Methanothermobacter marburgensis str. Marburg] Length = 148 Score = 145 bits (365), Expect = 4e-33, Method: Composition-based stats. Identities = 45/133 (33%), Positives = 73/133 (54%), Gaps = 4/133 (3%) Query: 43 VDQLVTWARTGSLMWM---TFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVA 99 +D L + R S+ T G C +E++ PRYDLE++G +PR++DV++V Sbjct: 2 LDALKSILRKTSIHVCLVNTGGCNGCDIEVLALLSPRYDLEQYGIYVHQNPREADVILVT 61 Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGCDRIVPVDIYVPG 158 G +T + L+R+Y + PEP+ V+++G+C G ++ SV +PVD VPG Sbjct: 62 GAVTEQWREKLQRIYSKAPEPKIVVALGNCPISGDVFNQEGGSVYAPVSDFIPVDAEVPG 121 Query: 159 CPPTAEALIYGIL 171 CPP ++ IL Sbjct: 122 CPPRPSEILEAIL 134 >gi|89902056|ref|YP_524527.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Rhodoferax ferrireducens T118] gi|89346793|gb|ABD70996.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Rhodoferax ferrireducens T118] Length = 171 Score = 144 bits (364), Expect = 4e-33, Method: Composition-based stats. Identities = 40/128 (31%), Positives = 72/128 (56%), Gaps = 1/128 (0%) Query: 50 ARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108 ++ ++ + G C +E+ P Y++E G ASPR +D+++V G ++ M + Sbjct: 42 GQSLAIRLVDAGSCNGCELEINALGNPYYNIEGLGIKFVASPRHADMLLVTGPVSRNMVT 101 Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168 AL+R +D +PEP+ V+++G C GG + SY+ ++PVD +PGCPP ++ Sbjct: 102 ALKRTFDAIPEPKLVVAVGDCGCDGGIFGESYASCGRVSNVIPVDWVIPGCPPPPIEILR 161 Query: 169 GILLLQKK 176 GIL ++ Sbjct: 162 GILTAVRR 169 >gi|148262959|ref|YP_001229665.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Geobacter uraniireducens Rf4] gi|146396459|gb|ABQ25092.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Geobacter uraniireducens Rf4] Length = 263 Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats. Identities = 44/124 (35%), Positives = 68/124 (54%), Gaps = 1/124 (0%) Query: 46 LVTWARTGSLMWMT-FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTN 104 L + R+ L ++ G C ++ S +DL RFG ASPR +D + V G +T Sbjct: 128 LSLFGRSLKLREVSAGGCNACEADVNVLSTVGFDLGRFGIQFVASPRHADGIFVTGPVTE 187 Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164 M AL + Y+ +PEP+ VI+ G+CA GG + S G + ++PVD+Y+PGCPP Sbjct: 188 NMREALLKTYEAVPEPKIVIASGACAINGGPFIDSSEAHNGVEGLLPVDLYIPGCPPHPI 247 Query: 165 ALIY 168 ++ Sbjct: 248 TILD 251 >gi|224370960|ref|YP_002605124.1| HyfI [Desulfobacterium autotrophicum HRM2] gi|223693677|gb|ACN16960.1| HyfI [Desulfobacterium autotrophicum HRM2] Length = 258 Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats. Identities = 45/118 (38%), Positives = 64/118 (54%) Query: 60 FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119 G C + +DL RFG ASPR +D ++V G +T M +AL++ YD +P Sbjct: 141 GGCNACEADTNVLGTIGWDLARFGIDFVASPRHADGLLVTGPVTRNMETALKKTYDALPS 200 Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 P+ VI+ G+CA GG Y G D I+PVD+Y+PGCPP ++ +L KI Sbjct: 201 PKIVIATGACAISGGPYAGHAQQHNGVDAILPVDLYIPGCPPHPFTILEALLCYLGKI 258 >gi|78043938|ref|YP_360650.1| carbon monoxide-induced hydrogenase subunit CooL [Carboxydothermus hydrogenoformans Z-2901] gi|77996053|gb|ABB14952.1| carbon monoxide-induced hydrogenase, CooL subunit [Carboxydothermus hydrogenoformans Z-2901] Length = 143 Score = 144 bits (363), Expect = 6e-33, Method: Composition-based stats. Identities = 43/137 (31%), Positives = 75/137 (54%), Gaps = 4/137 (2%) Query: 43 VDQLVTWARTGSLMWM---TFGLACCAVEMMQASM-PRYDLERFGFAPRASPRQSDVMIV 98 + +++ S C VE+ + PRYD+ER G SP+ +D++++ Sbjct: 1 MKKILQKIAKKSPWLYRINAGSCNGCDVELATTACIPRYDVERLGCKYCGSPKHADIVLI 60 Query: 99 AGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPG 158 G LT ++ + R+Y+++PEP+ +++G C GG + SY++ D +PVD+ VPG Sbjct: 61 TGPLTARVKEKVLRLYEEIPEPKVTVAIGVCPISGGVFRDSYAITGPIDNFIPVDVNVPG 120 Query: 159 CPPTAEALIYGILLLQK 175 CPP +A+I GI+ K Sbjct: 121 CPPRPQAIIDGIIEAIK 137 >gi|224372780|ref|YP_002607152.1| hydrogenase subunit [Nautilia profundicola AmH] gi|223589533|gb|ACM93269.1| hydrogenase subunit [Nautilia profundicola AmH] Length = 166 Score = 144 bits (363), Expect = 7e-33, Method: Composition-based stats. Identities = 43/128 (33%), Positives = 69/128 (53%), Gaps = 4/128 (3%) Query: 49 WARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMA 107 +A + ++ + G C E S P YDLER G ASPR +DVM ++G +T M Sbjct: 39 FAGSLAIRMVDSGSCNACEAECNALSNPYYDLERLGIHFVASPRHADVMFLSGVMTMNMY 98 Query: 108 SALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALI 167 Y+QMP P++VI++G C G + +Y++ + +D ++PGCPP+ + +I Sbjct: 99 HHAIDCYNQMPSPKWVIAIGECVKDMGVFEKTYAIKGND---LKIDYFIPGCPPSPKDII 155 Query: 168 YGILLLQK 175 G+L K Sbjct: 156 KGLLKFLK 163 >gi|150402630|ref|YP_001329924.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanococcus maripaludis C7] gi|150033660|gb|ABR65773.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanococcus maripaludis C7] Length = 156 Score = 143 bits (362), Expect = 7e-33, Method: Composition-based stats. Identities = 44/152 (28%), Positives = 80/152 (52%), Gaps = 16/152 (10%) Query: 46 LVTWARTGSL---MWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL 102 + + R S+ + T G C +E++ P+YD+E++G +PR++DV++V G + Sbjct: 2 IKDFVRKRSINVCLVNTGGCNGCDIEVVSCLAPKYDIEQYGIYVHNNPREADVLVVTGPV 61 Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162 T L +Y++ PEP+ VI++G+CA GG + + + D ++PVD +PGCPP Sbjct: 62 TGAWEKRLLEIYEKTPEPKIVIAVGACALSGGIFKEGH-IHGPVDSVIPVDAKLPGCPPR 120 Query: 163 AEALIYGIL------------LLQKKIRRVGN 182 +I ++ LL +K++ N Sbjct: 121 PSEIISAVVAIAPDALAAKEKLLNQKLKEEKN 152 >gi|289641804|ref|ZP_06473961.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Frankia symbiont of Datisca glomerata] gi|289508329|gb|EFD29271.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Frankia symbiont of Datisca glomerata] Length = 160 Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats. Identities = 45/117 (38%), Positives = 65/117 (55%) Query: 60 FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119 C +E+ A P YD ER+G ASPR +DV++V G +T MA LRR + P Sbjct: 44 GSCNGCEIEIAAAFGPVYDAERYGARVVASPRHADVLLVTGPVTRNMAEPLRRTVEATPR 103 Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKK 176 PR VI++G CA G + Y V +VPVD+ VPGCPP +A++ + + ++ Sbjct: 104 PRLVIAVGDCALNCGEFAGGYGVQGPVADVVPVDLQVPGCPPEPDAIVAALRTVTRR 160 >gi|114775564|ref|ZP_01451132.1| hydrogenase subunit [Mariprofundus ferrooxydans PV-1] gi|114553675|gb|EAU56056.1| hydrogenase subunit [Mariprofundus ferrooxydans PV-1] Length = 169 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 42/138 (30%), Positives = 75/138 (54%), Gaps = 4/138 (2%) Query: 38 FLVTSVDQLVT--WARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSD 94 + ++ ++ +A + ++ + G C +E+ + YD+ERFG ASPR +D Sbjct: 26 VMGKRLESVIRNHFAGSLTIRAVDAGSCNGCELEIHATNNAYYDIERFGIHFTASPRFAD 85 Query: 95 VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGCDRIVPVD 153 +++V G ++ M AL Y+ +P+ V++MG CA G + +Y++ I+PVD Sbjct: 86 MLLVTGPVSVNMRKALEMTYNATSDPKLVVAMGDCAVNCGVFGRDNYAIAGAVSDIIPVD 145 Query: 154 IYVPGCPPTAEALIYGIL 171 + + GCPPT +I GIL Sbjct: 146 VVIHGCPPTPTDIIRGIL 163 >gi|150399523|ref|YP_001323290.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanococcus vannielii SB] gi|150012226|gb|ABR54678.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanococcus vannielii SB] Length = 159 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 43/131 (32%), Positives = 75/131 (57%), Gaps = 4/131 (3%) Query: 46 LVTWARTGSL---MWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL 102 + + R S+ + T G C +E++ PRYD+E++G +PR++DV++V G + Sbjct: 5 IKDFVRKRSINVCIVNTGGCNGCDIEIVSTLAPRYDIEQYGIYVHNNPREADVLVVTGPV 64 Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162 T L +Y++ PEP+ V+S+G+CA GG + + + D+I+PVD +PGCPP Sbjct: 65 TGAWEKRLLELYEKTPEPKIVVSIGACALSGGIFKEGH-IFGPVDKIIPVDAKLPGCPPR 123 Query: 163 AEALIYGILLL 173 +I I+ + Sbjct: 124 PSEIISAIVSI 134 >gi|325578545|ref|ZP_08148645.1| hydrogenase-4 component I [Haemophilus parainfluenzae ATCC 33392] gi|325159781|gb|EGC71911.1| hydrogenase-4 component I [Haemophilus parainfluenzae ATCC 33392] Length = 258 Score = 143 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 53/138 (38%), Positives = 76/138 (55%), Gaps = 5/138 (3%) Query: 46 LVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTN 104 L R+ + + G C +E+ P +D ERFG ASPR +D+++ G +T Sbjct: 30 LKDIQRSAYVYRVDCGGCNGCEIEIFSTITPTFDAERFGIKVVASPRHADILLFTGAVTR 89 Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164 M + R Y P+P+ I+ G+C GGG +H Y V G D+IVPVD+Y+PGCPPT Sbjct: 90 AMRTPAMRAYQAAPDPKICIAYGACGCGGGIFHDLYCVWGGSDQIVPVDVYIPGCPPTPA 149 Query: 165 ALIYGIL----LLQKKIR 178 A IYG LL +K++ Sbjct: 150 ATIYGFAVALGLLDQKLK 167 >gi|222054796|ref|YP_002537158.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Geobacter sp. FRC-32] gi|221564085|gb|ACM20057.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Geobacter sp. FRC-32] Length = 256 Score = 143 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 45/122 (36%), Positives = 66/122 (54%), Gaps = 1/122 (0%) Query: 46 LVTWARTGSLM-WMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTN 104 L + R+ L G C ++ S +DL RFG ASPR +D ++V G +T Sbjct: 120 LSLFGRSLKLREVCAGGCNACEADVNVLSTVAWDLGRFGIQFVASPRHADGILVTGPVTE 179 Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164 M AL + Y+ +P P+ VI+ G+CA GG + S V G D ++PVD+Y+PGCPP Sbjct: 180 NMREALLKTYEAVPAPKIVIASGACAINGGPFMDSPEVHNGVDGLLPVDLYIPGCPPHPF 239 Query: 165 AL 166 + Sbjct: 240 TI 241 >gi|301156407|emb|CBW15878.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit [Haemophilus parainfluenzae T3T1] Length = 258 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 53/138 (38%), Positives = 76/138 (55%), Gaps = 5/138 (3%) Query: 46 LVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTN 104 L R+ + + G C +E+ P +D ERFG ASPR +D+++ G +T Sbjct: 30 LKDIQRSAYVYRVDCGGCNGCEIEIFSTITPTFDAERFGIKVVASPRHADILLFTGAVTR 89 Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164 M + R Y P+P+ I+ G+C GGG +H Y V G D+IVPVD+Y+PGCPPT Sbjct: 90 AMRTPAMRAYQAAPDPKICIAYGACGCGGGIFHDLYCVWGGSDQIVPVDVYIPGCPPTPA 149 Query: 165 ALIYGIL----LLQKKIR 178 A IYG LL +K++ Sbjct: 150 ATIYGFAVALGLLDQKLK 167 >gi|121534188|ref|ZP_01666013.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Thermosinus carboxydivorans Nor1] gi|121307291|gb|EAX48208.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Thermosinus carboxydivorans Nor1] Length = 143 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 42/128 (32%), Positives = 71/128 (55%), Gaps = 4/128 (3%) Query: 52 TGSLMWM---TFGLACCAVEMMQASM-PRYDLERFGFAPRASPRQSDVMIVAGTLTNKMA 107 S C VE+ + PRYD+ER G SP+ +D++++ G LT ++ Sbjct: 10 KKSPWLYRINAGSCNGCDVELATTACIPRYDVERLGCKYCGSPKHADIVLITGPLTVRVK 69 Query: 108 SALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALI 167 + R+Y+++P+P+ +++G C GG + SY++ D +PVD+ VPGCPP +A+I Sbjct: 70 EKVLRLYEEIPDPKVTVAIGVCPISGGVFRDSYAIAGPIDNFIPVDVNVPGCPPRPQAII 129 Query: 168 YGILLLQK 175 GI+ K Sbjct: 130 DGIIEAIK 137 >gi|83592758|ref|YP_426510.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Rhodospirillum rubrum ATCC 11170] gi|1515468|gb|AAC45118.1| CooL [Rhodospirillum rubrum] gi|83575672|gb|ABC22223.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Rhodospirillum rubrum ATCC 11170] Length = 142 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 46/125 (36%), Positives = 71/125 (56%), Gaps = 4/125 (3%) Query: 52 TGSLMWM---TFGLACCAVEMMQASM-PRYDLERFGFAPRASPRQSDVMIVAGTLTNKMA 107 S C VE+ + PRYD+ER G SP+ +D+++V G LT ++ Sbjct: 9 KKSPWLYRINAGSCNGCDVELATTACIPRYDVERLGCQYCGSPKHADIVLVTGPLTARVK 68 Query: 108 SALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALI 167 + RVY+++P+P+ +++G C GG + SYS+V DR +PVD+ VPGCPP +A+I Sbjct: 69 DKVLRVYEEIPDPKVTVAIGVCPISGGVFRESYSIVGPIDRYLPVDVNVPGCPPRPQAII 128 Query: 168 YGILL 172 GI Sbjct: 129 EGIAK 133 >gi|225466336|ref|XP_002274046.1| PREDICTED: similar to NADH-plastoquinone oxidoreductase subunit K, partial [Vitis vinifera] Length = 155 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 50/90 (55%), Positives = 69/90 (76%), Gaps = 1/90 (1%) Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGCDRIV 150 Q+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++ Sbjct: 1 QADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLI 60 Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 PVD+Y+PGCPP EA+I I L+KKI R Sbjct: 61 PVDVYLPGCPPKPEAVIDAITKLRKKISRE 90 >gi|152991860|ref|YP_001357581.1| Ni-Fe hydrogenase, small subunit HycG [Sulfurovum sp. NBC37-1] gi|151423721|dbj|BAF71224.1| Ni-Fe hydrogenase, small subunit HycG [Sulfurovum sp. NBC37-1] Length = 168 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 45/131 (34%), Positives = 70/131 (53%), Gaps = 1/131 (0%) Query: 48 TWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKM 106 +A + ++ + G C E S P YDLER G ASPR +DVM++ G +T M Sbjct: 38 KFAGSLAIRMVDSGSCNACEAECNALSNPYYDLERLGIYFVASPRHADVMLLNGLMTFNM 97 Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL 166 + Y Q+PEP++VI++G+C + +++V +PV ++PGCPP + Sbjct: 98 TPHVLDAYKQIPEPKWVITLGACPVMEAPFEKTFAVKAPAADHLPVAHHIPGCPPEPLEI 157 Query: 167 IYGILLLQKKI 177 I G+L KKI Sbjct: 158 IRGLLEFLKKI 168 >gi|212223420|ref|YP_002306656.1| Hydrogenase 4, component I or formate hydrogen lyase, subunit 7 [Thermococcus onnurineus NA1] gi|212008377|gb|ACJ15759.1| Hydrogenase 4, component I or formate hydrogen lyase, subunit 7 [Thermococcus onnurineus NA1] Length = 266 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 43/152 (28%), Positives = 74/152 (48%), Gaps = 23/152 (15%) Query: 53 GSLMWMT---FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASA 109 S+ C +E++ P YD ER G SPR +D ++V+G LT + A Sbjct: 5 KSVWVFHVDSGSCNGCDIEILDVLTPYYDAERLGIKLVPSPRHADALLVSGPLTRQTYYA 64 Query: 110 LRRVYDQM-PEPRYVISMGSCANGGGYYHYSYSVVRGCDRI---------VPV------- 152 ++ Y+ M P+PR V+++G+CA+ GG ++ Y + + V Sbjct: 65 VKAAYEAMPPKPRIVVAIGTCASSGGIFYNGYPIYNPNPERGSDRLRTGGIEVLLAEYGK 124 Query: 153 --DIYVPGCPPTAEALIYGILLLQK-KIRRVG 181 D+Y+PGCPP+ E ++YG+ L K +++ Sbjct: 125 KPDMYIPGCPPSPEEILYGLAQLLGLKEKKMK 156 >gi|116191457|ref|XP_001221541.1| hypothetical protein CHGG_05446 [Chaetomium globosum CBS 148.51] gi|88181359|gb|EAQ88827.1| hypothetical protein CHGG_05446 [Chaetomium globosum CBS 148.51] Length = 189 Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 71/174 (40%), Positives = 87/174 (50%), Gaps = 47/174 (27%) Query: 7 NQKIISGQSSCSLEKVDADFSRISSEITHKG---FLVTSVDQLVTWARTGSLMWMTFGLA 63 + + S + +S+E + ++++D L+ WAR GSL M+FGLA Sbjct: 47 STEQTSPARQPRIPPPVRPTLAVSTEKRPNSVTEYALSTLDGLINWARQGSLWPMSFGLA 106 Query: 64 CCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYV 123 CCA+EMM SMPRYD +R G RASPRQSDVMIVAG + Sbjct: 107 CCAIEMMHLSMPRYDNDRQGIIFRASPRQSDVMIVAGGV--------------------- 145 Query: 124 ISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 DRIVPVDIYVPGCPPTAEAL YGI LQKK+ Sbjct: 146 -----------------------DRIVPVDIYVPGCPPTAEALQYGIFQLQKKM 176 >gi|148260403|ref|YP_001234530.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Acidiphilium cryptum JF-5] gi|146402084|gb|ABQ30611.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Acidiphilium cryptum JF-5] Length = 167 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 49/162 (30%), Positives = 83/162 (51%), Gaps = 9/162 (5%) Query: 5 TVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFG-LA 63 T+ + + G + DA+ + + +E+ L R+ ++ + G Sbjct: 4 TLFESLHRGTMTEPAPPRDAETAALVAELDRA--------ALRRLGRSLAIRAVDAGSCN 55 Query: 64 CCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYV 123 C +E++ YDLERFG ASPR +DV++V G +T M++A R Y+ MP P++V Sbjct: 56 GCELEIIALGNVLYDLERFGLKLVASPRHADVLLVTGPMTRNMSAATRLAYEAMPAPKFV 115 Query: 124 ISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEA 165 +++G C GG + S + G ++PV + +PGCPPT A Sbjct: 116 VAVGDCGRDGGVFAASPHCLGGTASVLPVTLTIPGCPPTPAA 157 >gi|320101195|ref|YP_004176787.1| NADH dehydrogenase (ubiquinone) 30 kDa subunit [Desulfurococcus mucosus DSM 2162] gi|319753547|gb|ADV65305.1| NADH dehydrogenase (ubiquinone) 30 kDa subunit [Desulfurococcus mucosus DSM 2162] Length = 338 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 51/142 (35%), Positives = 74/142 (52%) Query: 43 VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL 102 +++ W+ + SL + + AC AVE M D ER+G+ P SPRQSD+ I G L Sbjct: 3 LEKAAKWSFSRSLWMIHYCSACGAVEFPPLVMSPLDWERYGYMPTPSPRQSDLYIGMGYL 62 Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162 T K +Y QMPEPR V++ +C + GG Y SY+ + D V V+ +VPGC P Sbjct: 63 TKKTVKLFLNMYRQMPEPRLVLAGCNCTSTGGLYWDSYATYKRLDDFVEVEGWVPGCMPM 122 Query: 163 AEALIYGILLLQKKIRRVGNVK 184 + I +++ I G K Sbjct: 123 PDDYTAMIEHVRRDIAGRGFEK 144 >gi|303243649|ref|ZP_07329990.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanothermococcus okinawensis IH1] gi|302485891|gb|EFL48814.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanothermococcus okinawensis IH1] Length = 155 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 42/131 (32%), Positives = 76/131 (58%), Gaps = 4/131 (3%) Query: 46 LVTWARTGSL---MWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL 102 + + R S+ + T G C +E++ PRYD+E++G +PR++D+++V G + Sbjct: 2 IKEFFRKRSINVCIVNTGGCNGCDIELVATLAPRYDIEQYGIHVHNNPREADILVVTGPV 61 Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162 T + L+ +Y++ PEP+ VI++G+CA G + + V D+I+PV+ VPGCPP Sbjct: 62 TLPWKNRLKEIYEKTPEPKIVIAVGACALSCGIFKEGH-VCGPVDKIIPVNAKVPGCPPR 120 Query: 163 AEALIYGILLL 173 +I +L + Sbjct: 121 PAEIIEAVLKV 131 >gi|303325626|ref|ZP_07356069.1| carbon monoxide-induced hydrogenase, CooL subunit [Desulfovibrio sp. 3_1_syn3] gi|302863542|gb|EFL86473.1| carbon monoxide-induced hydrogenase, CooL subunit [Desulfovibrio sp. 3_1_syn3] Length = 149 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 45/137 (32%), Positives = 76/137 (55%), Gaps = 4/137 (2%) Query: 42 SVDQLVTWARTGSLM---WMTFGLACCAVEMMQASM-PRYDLERFGFAPRASPRQSDVMI 97 ++D L+ S C VE+ + PRYD+ER G SPR +D+++ Sbjct: 2 ALDNLLKKLSVRSPWLFRINAGSCNGCDVELATTACIPRYDVERLGCKYCGSPRHADIVL 61 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 + G LT ++ + RV+ ++PEP+ +++G C GG + YS+ DR +PVD+ VP Sbjct: 62 ITGPLTTRVRDRVLRVWHEIPEPKVTVAVGICPISGGVFREGYSIEGPIDRYLPVDVNVP 121 Query: 158 GCPPTAEALIYGILLLQ 174 GCPP +A++ G++L + Sbjct: 122 GCPPRPQAILEGVVLAR 138 >gi|220905144|ref|YP_002480456.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219869443|gb|ACL49778.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 149 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 46/137 (33%), Positives = 77/137 (56%), Gaps = 4/137 (2%) Query: 42 SVDQLVTWARTGSLM---WMTFGLACCAVEMMQASM-PRYDLERFGFAPRASPRQSDVMI 97 S+D ++ S C VE+ + PRYD+ER G SPR +D+++ Sbjct: 2 SLDNMLKKLSVRSPWLFRINAGSCNGCDVELATTACIPRYDVERLGCRYCGSPRHADIVL 61 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 + G LT ++ + RV+D++PEP+ +++G C GG + YS+ DR +PVD+ VP Sbjct: 62 ITGPLTTRVRDRVLRVWDEIPEPKVTVAVGICPISGGVFREGYSIEGPIDRYLPVDVNVP 121 Query: 158 GCPPTAEALIYGILLLQ 174 GCPP +A++ G++L + Sbjct: 122 GCPPRPQAILEGVVLAR 138 >gi|261856376|ref|YP_003263659.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Halothiobacillus neapolitanus c2] gi|261836845|gb|ACX96612.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Halothiobacillus neapolitanus c2] Length = 274 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 55/158 (34%), Positives = 86/158 (54%), Gaps = 2/158 (1%) Query: 21 KVDADFSRISSEITHKGFLVTSVDQ-LVTWARTGSLMWMTFG-LACCAVEMMQASMPRYD 78 + AD SR++ T L + L + R+ + + G C E+ P Y+ Sbjct: 105 RDRADLSRLARPATPDKKLEEKWQKSLAGFGRSLHIRHVDAGSCNGCESEISALLNPFYN 164 Query: 79 LERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY 138 L R G SPR +D+++V G +T M L R ++ MPEPR+V+++G+CA GGG Sbjct: 165 LHRLGVFFTPSPRFADLLLVTGPVTEVMREPLLRTFEAMPEPRWVMALGTCATGGGTNGG 224 Query: 139 SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKK 176 Y+ +G D I+PVDI++PGCPP A+I +L+L + Sbjct: 225 GYACHQGLDGILPVDIWLPGCPPNPAAIIEALLVLLDR 262 >gi|303247448|ref|ZP_07333720.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfovibrio fructosovorans JJ] gi|302491144|gb|EFL51036.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfovibrio fructosovorans JJ] Length = 253 Score = 141 bits (355), Expect = 5e-32, Method: Composition-based stats. Identities = 47/126 (37%), Positives = 69/126 (54%), Gaps = 1/126 (0%) Query: 49 WARTGSLMWMT-FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMA 107 +AR+ L ++ G C ++ YDL RFG ASPR +D + V G +T M Sbjct: 122 FARSLKLRQVSAGGCNACEADINVLGTVVYDLGRFGIDFVASPRHADGVAVTGPVTENMY 181 Query: 108 SALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALI 167 A R +D +P+PR I++G+CA GG + S G ++PVD+YVPGCPP ++ Sbjct: 182 QATRDTFDAVPDPRLAIAVGACAISGGIFAASAETRGGAPGVMPVDLYVPGCPPHPLTIL 241 Query: 168 YGILLL 173 G+L L Sbjct: 242 DGLLRL 247 >gi|153006624|ref|YP_001380949.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Anaeromyxobacter sp. Fw109-5] gi|152030197|gb|ABS27965.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Anaeromyxobacter sp. Fw109-5] Length = 256 Score = 140 bits (354), Expect = 6e-32, Method: Composition-based stats. Identities = 48/149 (32%), Positives = 79/149 (53%), Gaps = 6/149 (4%) Query: 35 HKGFLVTSVDQLVT--WARTGSLMWMTF-GLACCAVEMMQASMPRYDLERFGFAPRASPR 91 + L ++D + + R+ L ++ G C E+ A ++DL RFG ASPR Sbjct: 107 DEPVLAAALDAEMRRVFGRSLKLRQVSAAGCNGCEAELNAAGNIQFDLGRFGIQFVASPR 166 Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151 +D ++V G ++ M AL++ Y+ +P PR VI++G+CA GG + S G +P Sbjct: 167 HADGIVVTGPVSENMRLALQKTYEAVPAPRLVIAVGACAISGGVFRESPVSCGGAAAALP 226 Query: 152 ---VDIYVPGCPPTAEALIYGILLLQKKI 177 VD+YVPGCPP + G+L + ++ Sbjct: 227 GVRVDLYVPGCPPHPITFLDGMLRMLGRL 255 >gi|167898184|ref|ZP_02485586.1| putative hydrogenase subunit [Burkholderia pseudomallei 7894] Length = 158 Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats. Identities = 42/118 (35%), Positives = 63/118 (53%), Gaps = 1/118 (0%) Query: 50 ARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108 R + + G C +E+ P Y++E G ASPR +D++++ G LT M Sbjct: 41 GRALCIRAIDAGSCNGCELELHALGNPYYNIEGLGIKFVASPRHADMLLITGPLTLNMRD 100 Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL 166 A+R YD P P+ V++ G CA GG + SY+V + +VPVD+ +PGCPP L Sbjct: 101 AVRLAYDATPAPKLVVAAGDCACTGGVFAGSYAVCGPIETLVPVDVAIPGCPPRPIEL 158 >gi|212704287|ref|ZP_03312415.1| hypothetical protein DESPIG_02342 [Desulfovibrio piger ATCC 29098] gi|212672249|gb|EEB32732.1| hypothetical protein DESPIG_02342 [Desulfovibrio piger ATCC 29098] Length = 149 Score = 140 bits (353), Expect = 8e-32, Method: Composition-based stats. Identities = 45/148 (30%), Positives = 82/148 (55%), Gaps = 5/148 (3%) Query: 42 SVDQLVTWARTGSLM---WMTFGLACCAVEMMQASM-PRYDLERFGFAPRASPRQSDVMI 97 S+D ++ S C VE+ + PRYD+ER G SPR +D+++ Sbjct: 2 SLDNMLKKLSVRSPWLFRINAGSCNGCDVELATTACIPRYDVERLGCRYCGSPRHADIVL 61 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157 + G LT ++ + V++++PEP+ +++G C GG + YS+ R +PVD+ VP Sbjct: 62 ITGPLTTRVRDRVLAVWNEIPEPKITVAVGICPISGGVFREGYSIEGPISRYIPVDVNVP 121 Query: 158 GCPPTAEALIYGILLLQKK-IRRVGNVK 184 GCPP +A++ G++L +K ++++G + Sbjct: 122 GCPPRPQAILEGVVLARKMWLKKLGIEE 149 >gi|219670289|ref|YP_002460724.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfitobacterium hafniense DCB-2] gi|219540549|gb|ACL22288.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfitobacterium hafniense DCB-2] Length = 155 Score = 140 bits (353), Expect = 9e-32, Method: Composition-based stats. Identities = 41/124 (33%), Positives = 68/124 (54%), Gaps = 1/124 (0%) Query: 52 TGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASAL 110 + + + G C EM P YDL+RFG ASPR +D+++ G ++ + A Sbjct: 32 SWHIRHLDCGSCNGCDWEMSALLNPIYDLQRFGLDFVASPRHADILMCTGPMSTHLIQAA 91 Query: 111 RRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGI 170 Y+ P P+ +I++G CA GG + +Y+ G ++PVDI +PGCPP+ + L+ + Sbjct: 92 LATYEGTPNPKKIIAVGDCALDGGMFKEAYAAHNGVGEVLPVDIKIPGCPPSPDELLKVL 151 Query: 171 LLLQ 174 L L+ Sbjct: 152 LQLK 155 >gi|302879581|ref|YP_003848145.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Gallionella capsiferriformans ES-2] gi|302582370|gb|ADL56381.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Gallionella capsiferriformans ES-2] Length = 171 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 40/125 (32%), Positives = 68/125 (54%), Gaps = 2/125 (1%) Query: 49 WARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMA 107 + S+ + G C +E+ + Y+LE G ASPR +D+++V G ++ M Sbjct: 40 FGGALSIRLVDAGSCNGCELEIHAVNNAYYNLEGLGIKFVASPRHADMLLVTGPVSRHME 99 Query: 108 SALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGCDRIVPVDIYVPGCPPTAEAL 166 AL+R Y+ P+P+ V+++G CA GG + +Y+ ++ VD+ V GCPPT A+ Sbjct: 100 VALKRTYEATPDPKLVVAIGECACNGGIFGTDNYASCGNIANVISVDVAVSGCPPTPVAI 159 Query: 167 IYGIL 171 + IL Sbjct: 160 LQAIL 164 >gi|226327309|ref|ZP_03802827.1| hypothetical protein PROPEN_01176 [Proteus penneri ATCC 35198] gi|225204527|gb|EEG86881.1| hypothetical protein PROPEN_01176 [Proteus penneri ATCC 35198] Length = 172 Score = 140 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 45/119 (37%), Positives = 67/119 (56%), Gaps = 1/119 (0%) Query: 46 LVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTN 104 L R+ + + G C +E+ A P +D ERFG ASPR +D+++ G +T Sbjct: 30 LKDIQRSAYVYRVDCGGCNGCEIEIFSAITPVFDAERFGIKVVASPRHADILLFTGAVTR 89 Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTA 163 +M R Y+ P+P+ IS G+C GGG +H Y V G + IVP+D+++PGCPP A Sbjct: 90 QMRVPALRAYESAPDPKICISYGACGCGGGIFHDLYCVWGGSESIVPIDVWIPGCPPNA 148 >gi|256830388|ref|YP_003159116.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfomicrobium baculatum DSM 4028] gi|256579564|gb|ACU90700.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfomicrobium baculatum DSM 4028] Length = 263 Score = 140 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 45/154 (29%), Positives = 79/154 (51%), Gaps = 3/154 (1%) Query: 29 ISSEITHKGFLVTSVDQLVT--WARTGSLMWMT-FGLACCAVEMMQASMPRYDLERFGFA 85 + + L ++D+ + R+ L ++ G C ++ +DL RFG Sbjct: 107 LGETGAEELRLAAALDKKMKSLLGRSLRLRQVSAGGCGACEADINVLGTIGWDLGRFGIQ 166 Query: 86 PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRG 145 ASPR +D +++ G +T M AL++ + +PEPR I++G+CA GG + G Sbjct: 167 YVASPRHADGVLITGPVTKGMELALQKTWAAVPEPRIAIALGACAISGGPFIGHPQHNGG 226 Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179 D I+P+D+Y+PGCPP ++ G L L ++ + Sbjct: 227 ADPIIPIDLYIPGCPPHPLTILDGFLRLLGRLPK 260 >gi|326403595|ref|YP_004283677.1| putative NADH ubiquinone oxidoreductase [Acidiphilium multivorum AIU301] gi|325050457|dbj|BAJ80795.1| putative NADH ubiquinone oxidoreductase [Acidiphilium multivorum AIU301] Length = 167 Score = 140 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 48/162 (29%), Positives = 83/162 (51%), Gaps = 9/162 (5%) Query: 5 TVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFG-LA 63 T+ + + G + + DA+ + + +E+ L R+ ++ + G Sbjct: 4 TLFESLHRGTMTETAPPRDAETAALVAELDRA--------ALRRLGRSLAIRAVDAGSCN 55 Query: 64 CCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYV 123 C +E++ YDLERFG ASPR +DV++ G +T M++A R Y+ MP P++V Sbjct: 56 GCELEIIALGNVLYDLERFGLKLVASPRHADVLLATGPMTRNMSAATRLAYEAMPAPKFV 115 Query: 124 ISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEA 165 +++G C GG + S + G ++PV + +PGCPPT A Sbjct: 116 VAVGDCGRDGGVFAASPHCLGGTASVLPVTLTIPGCPPTPAA 157 >gi|319957574|ref|YP_004168837.1| NADH ubiquinone oxidoreductase 20 kda subunit [Nitratifractor salsuginis DSM 16511] gi|319419978|gb|ADV47088.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Nitratifractor salsuginis DSM 16511] Length = 170 Score = 140 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 40/132 (30%), Positives = 72/132 (54%), Gaps = 1/132 (0%) Query: 48 TWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKM 106 +A + ++ + G C E S P YDLER G ASPR +D+M+++G LT M Sbjct: 38 KFAGSLAIRMVDSGSCNACEAECNALSNPYYDLERLGIHFVASPRHADLMLLSGVLTFNM 97 Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL 166 + ++Q+PEP++ I++G C + ++++V +PV ++PGCPP+ + + Sbjct: 98 LPHVLDAWEQIPEPKWCITLGDCPAMQAPFEHTFAVTAPASEHLPVAHHIPGCPPSPDRI 157 Query: 167 IYGILLLQKKIR 178 I G+L + + Sbjct: 158 IEGLLEFLENLE 169 >gi|218888275|ref|YP_002437596.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218759229|gb|ACL10128.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 146 Score = 140 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 44/127 (34%), Positives = 71/127 (55%), Gaps = 4/127 (3%) Query: 53 GSLMWM---TFGLACCAVEMMQASM-PRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108 S C VE+ + PRYD+ER G SPR +D++++ G LT ++ Sbjct: 10 RSPWLYRINAGSCNGCDVELATTACIPRYDVERLGCKYCGSPRHADIVLITGPLTARVKD 69 Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168 + RV+D++PEP+ +++G C GG + YS+ DR +PVD+ VPGCPP +A+I Sbjct: 70 KVLRVWDEIPEPKVTVAVGICPVSGGVFRDGYSIEGPIDRYIPVDVNVPGCPPRPQAIIE 129 Query: 169 GILLLQK 175 G++ + Sbjct: 130 GVIKARD 136 >gi|288560655|ref|YP_003424141.1| energy-converting hydrogenase A subunit N EhaN [Methanobrevibacter ruminantium M1] gi|288543365|gb|ADC47249.1| energy-converting hydrogenase A subunit N EhaN [Methanobrevibacter ruminantium M1] Length = 153 Score = 140 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 42/133 (31%), Positives = 70/133 (52%), Gaps = 4/133 (3%) Query: 43 VDQLVTWARTGSLMWMT---FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVA 99 + +L R S+ G C VE++ PRYDLE++G +PR++DV++V Sbjct: 2 LKKLKDIVRKSSIHVCIVNCGGCNGCDVELVALLSPRYDLEQYGIYVHNNPREADVLLVT 61 Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGCDRIVPVDIYVPG 158 G +T + LRR+Y + PEP+ V+++G+C G + V+ +PVD +PG Sbjct: 62 GAVTEQWRDNLRRIYAKAPEPKIVVAVGNCPQSGDVFAQEGGRVLAPVSDFIPVDAAIPG 121 Query: 159 CPPTAEALIYGIL 171 CPP ++ +L Sbjct: 122 CPPRPSEILEAVL 134 >gi|119719099|ref|YP_919594.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Thermofilum pendens Hrk 5] gi|119524219|gb|ABL77591.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Thermofilum pendens Hrk 5] Length = 245 Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats. Identities = 47/137 (34%), Positives = 82/137 (59%), Gaps = 5/137 (3%) Query: 51 RTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASA 109 R+ L+ + G C +E+ A P +D+ER G SPR +DV++V G +T + Sbjct: 15 RSVYLLRVDSGSCNGCDIEVFDALTPYFDVERLGVKLVLSPRMADVILVTGPVTRQFLPV 74 Query: 110 LRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYG 169 L+ Y+ P+P V++ G+CA GGG ++ +Y G D+++PVD+Y+PGCPP A+++G Sbjct: 75 LKATYEAAPKPCVVVACGACACGGGIWYDTYGTAGGVDKVIPVDVYIPGCPPRPHAILHG 134 Query: 170 IL----LLQKKIRRVGN 182 + +L++K++R Sbjct: 135 VAVALDILEQKVKRSET 151 >gi|220904047|ref|YP_002479359.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219868346|gb|ACL48681.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 254 Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats. Identities = 40/115 (34%), Positives = 64/115 (55%) Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 G C + +DL RFG ASPR +D +++ G ++ M A Y+ PEP Sbjct: 140 GCNACEADCNVLGTLVFDLPRFGIDFVASPRHADGIVLTGPVSENMRLAAIDTYNATPEP 199 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175 R V+++G+CA GG + + G I+PVD++VPGCPP ++ G+L+L++ Sbjct: 200 RLVVAVGACAISGGLFRDAPQCNNGIADILPVDLFVPGCPPNPWTILDGLLMLRE 254 >gi|224099657|ref|XP_002334455.1| predicted protein [Populus trichocarpa] gi|222872368|gb|EEF09499.1| predicted protein [Populus trichocarpa] Length = 97 Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats. Identities = 42/97 (43%), Positives = 65/97 (67%) Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVM 96 + T+ + L W+R SL + +G +CC +E R+D +R+G PR+SPRQ+D++ Sbjct: 1 SVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLI 60 Query: 97 IVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGG 133 + AGT+T KMA +L R+Y+QMPE +YVI+MG+C G Sbjct: 61 LTAGTVTMKMAPSLVRLYEQMPEQKYVIAMGACTITG 97 >gi|294634805|ref|ZP_06713329.1| hydrogenase-4 component I [Edwardsiella tarda ATCC 23685] gi|291091773|gb|EFE24334.1| hydrogenase-4 component I [Edwardsiella tarda ATCC 23685] Length = 205 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 48/109 (44%), Positives = 65/109 (59%), Gaps = 4/109 (3%) Query: 74 MPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGG 133 P +D ERFG ASPR +D+++ G +T M R Y P+P+ VIS G+C G Sbjct: 1 SPLFDAERFGIKVVASPRHADILLFTGAVTRAMRVPALRAYQSAPDPKIVISYGACGCSG 60 Query: 134 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKKIR 178 G +H Y V G D+IVPVD+Y+PGCPPT A +YG LL +K++ Sbjct: 61 GIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAVALGLLDQKLK 109 >gi|118463973|ref|YP_884232.1| hydrogenase-4, I subunit, putative [Mycobacterium avium 104] gi|118165260|gb|ABK66157.1| hydrogenase-4, I subunit, putative [Mycobacterium avium 104] Length = 135 Score = 139 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 46/117 (39%), Positives = 60/117 (51%) Query: 60 FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119 C VE+ A P YD ERFG ASPR +D ++V G +T M LR P+ Sbjct: 19 GSCNGCEVEISGAFGPVYDAERFGARLVASPRHADALLVTGVVTRNMVEPLRNTLAATPQ 78 Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKK 176 PR VI+ G CA G + +Y VV IVPVD+ V GCPPT ++ + + K Sbjct: 79 PRVVIACGDCALNRGVFTDAYGVVGAVGEIVPVDVEVAGCPPTPAQIVDALRSVTGK 135 >gi|150400803|ref|YP_001324569.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanococcus aeolicus Nankai-3] gi|150013506|gb|ABR55957.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanococcus aeolicus Nankai-3] Length = 153 Score = 139 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 38/131 (29%), Positives = 73/131 (55%), Gaps = 4/131 (3%) Query: 46 LVTWARTGSL---MWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL 102 + + R S+ + T G C +E++ PRYD+E++G +PR++D++++ G + Sbjct: 2 IKEFFRKRSINLCIVNTGGCNGCDIELVSTLAPRYDIEQYGVYVHNNPREADILVITGPV 61 Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162 T L +Y++ PEP+ V+++G+CA GG + + + D+ +PVD + GCPP Sbjct: 62 TLPWKDKLVEIYEKTPEPKIVVAVGACALSGGIFKEGH-IYGPVDKFIPVDAKIVGCPPR 120 Query: 163 AEALIYGILLL 173 +I +L + Sbjct: 121 PSEIIEAVLKV 131 >gi|296166652|ref|ZP_06849078.1| NADH-ubiquinone oxidoreductase [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295897987|gb|EFG77567.1| NADH-ubiquinone oxidoreductase [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 159 Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats. Identities = 45/117 (38%), Positives = 62/117 (52%) Query: 60 FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119 C VE+ A P YD ERFG ASPR +D ++V G +T+ MA LR + P Sbjct: 43 GSCNGCEVEIAGAFGPVYDAERFGARLVASPRHADALLVTGVVTHNMAGPLRTTIEATPR 102 Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKK 176 PR VI+ G CA G + +Y V +VPVD+ +PGCPPT ++ + + K Sbjct: 103 PRRVIACGDCAIDRGVFGDAYGVAGAVGEVVPVDVEIPGCPPTPAQIVAALRSVTGK 159 >gi|315230909|ref|YP_004071345.1| NADH-ubiquinone oxidoreductase subunit B [Thermococcus barophilus MP] gi|315183937|gb|ADT84122.1| NADH-ubiquinone oxidoreductase chain B [Thermococcus barophilus MP] Length = 192 Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats. Identities = 42/144 (29%), Positives = 72/144 (50%), Gaps = 14/144 (9%) Query: 53 GSLMWMT---FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASA 109 SL C +E++ P+ D+ERFG SPR +D + G +T + Sbjct: 4 KSLWVFHLNSGSCNGCDIEILNIFAPKQDVERFGIKLVGSPRHADAIAFTGPVTRECLPK 63 Query: 110 LRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI-----------VPVDIYVPG 158 + + +PEP+ V+++GSCA GGG ++ +Y+V+ G + P IY+PG Sbjct: 64 VIEAFKAVPEPKIVLAIGSCACGGGIWYDTYAVIGGVKELYKILKEEYGIEPPTTIYIPG 123 Query: 159 CPPTAEALIYGILLLQKKIRRVGN 182 CPP EA+IY + + + +++ Sbjct: 124 CPPKPEAIIYAVAMARGLVKQKQK 147 >gi|301167470|emb|CBW27053.1| putative NADH-quinone oxidoreductase chain B [Bacteriovorax marinus SJ] Length = 172 Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 43/139 (30%), Positives = 84/139 (60%), Gaps = 2/139 (1%) Query: 41 TSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAG 100 T +++ W T S + TF ACC+ E +Y + F F R + SD++I++G Sbjct: 29 TFIERFHNWVNTHSTVPFTFATACCSSEYYSIFDDQYPEDNF-FPERVEAQNSDLLIISG 87 Query: 101 TLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCP 160 ++ K L+ +Y +MP+ ++V+ +G+C GG + S+++V + +PVDI++PGCP Sbjct: 88 SVNLKTYPLLKDIYKEMPKDKWVVVIGACPMSGGPFS-SFNIVPDISKDIPVDIFIPGCP 146 Query: 161 PTAEALIYGILLLQKKIRR 179 P+ + + +G+ LL++++R+ Sbjct: 147 PSPKEIAHGMSLLKERMRK 165 >gi|283853523|ref|ZP_06370764.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfovibrio sp. FW1012B] gi|283571104|gb|EFC19123.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfovibrio sp. FW1012B] Length = 253 Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 44/126 (34%), Positives = 70/126 (55%), Gaps = 1/126 (0%) Query: 49 WARTGSLMWMT-FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMA 107 +AR+ L ++ G C ++ + +DL RFG ASPR +D + V G +T M Sbjct: 122 FARSLKLRQVSAGGCNACEADLNVLTTVVFDLGRFGIDFVASPRHADGVAVTGPVTVNML 181 Query: 108 SALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALI 167 +A R +D +P+PR I++G+CA GG + S G +PVD+++PGCPP ++ Sbjct: 182 AATRATFDAVPDPRVAIAVGACAISGGVFAGSPETTGGATPHLPVDLFIPGCPPHPLTIL 241 Query: 168 YGILLL 173 G+L L Sbjct: 242 DGLLSL 247 >gi|148642373|ref|YP_001272886.1| [NiFe]-hydrogenase-3-type complex, small subunit/NADH:quinone oxidoreductase (complex I), subunit PSST/NdhK/NuoB [Methanobrevibacter smithii ATCC 35061] gi|222444424|ref|ZP_03606939.1| hypothetical protein METSMIALI_00035 [Methanobrevibacter smithii DSM 2375] gi|261351026|ref|ZP_05976443.1| carbon monoxide-induced hydrogenase, CooL subunit [Methanobrevibacter smithii DSM 2374] gi|148551390|gb|ABQ86518.1| [NiFe]-hydrogenase-3-type complex, small subunit/NADH:quinone oxidoreductase (complex I), subunit PSST/NdhK/NuoB [Methanobrevibacter smithii ATCC 35061] gi|222433989|gb|EEE41154.1| hypothetical protein METSMIALI_00035 [Methanobrevibacter smithii DSM 2375] gi|288860366|gb|EFC92664.1| carbon monoxide-induced hydrogenase, CooL subunit [Methanobrevibacter smithii DSM 2374] Length = 149 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 42/135 (31%), Positives = 73/135 (54%), Gaps = 4/135 (2%) Query: 43 VDQLVTWARTGSLMWMT---FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVA 99 ++ + R S+ G C VE++ + PRYDLE++G +PR++DV+++ Sbjct: 2 LNAIKDVVRKSSIHVCIVNCGGCNGCDVELVALTSPRYDLEQYGIYVHNNPREADVLLLT 61 Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGCDRIVPVDIYVPG 158 G +T + L+RVYD+ PEP+ V+++G+C G ++ V +PVD +PG Sbjct: 62 GAVTEQWVDNLKRVYDKAPEPKIVVAVGNCPQSGDVFNQEGGKVYAPASDFIPVDAEIPG 121 Query: 159 CPPTAEALIYGILLL 173 CPP ++ IL + Sbjct: 122 CPPRPSEILEAILAV 136 >gi|262366272|gb|ACY62829.1| NADH dehydrogenase I chain B [Yersinia pestis D182038] Length = 145 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 57/102 (55%), Positives = 75/102 (73%), Gaps = 2/102 (1%) Query: 81 RFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS 139 RFG RASPRQ+D M+VAGT KMA ++R+Y+QM EP++VISMG+CAN GG Y Sbjct: 5 RFGAEVLRASPRQADFMVVAGTCFTKMAPVIQRLYEQMLEPKWVISMGACANSGGMY-DI 63 Query: 140 YSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181 YSVV+G D+ +PVD+Y+PGCPP EA + +LLLQ+ I + Sbjct: 64 YSVVQGVDKFLPVDVYIPGCPPRPEAYMQALLLLQESIGKER 105 >gi|89895860|ref|YP_519347.1| formate hydrogenlyase subunit 7 [Desulfitobacterium hafniense Y51] gi|89335308|dbj|BAE84903.1| formate hydrogenlyase subunit 7 [Desulfitobacterium hafniense Y51] Length = 155 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 41/124 (33%), Positives = 67/124 (54%), Gaps = 1/124 (0%) Query: 52 TGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASAL 110 + + + G C EM P YDL+RFG ASPR +D+++ G ++ + A Sbjct: 32 SWHIRHLDCGSCNGCDWEMSALLNPIYDLQRFGLDFVASPRHADILMCTGPMSTHLIQAA 91 Query: 111 RRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGI 170 Y+ P P+ +I++G CA GG + +Y+ G +PVDI +PGCPP+ + L+ + Sbjct: 92 LATYEGTPNPKRIIAVGDCALDGGMFKEAYAAHNGVGEALPVDIKIPGCPPSPDELLKVL 151 Query: 171 LLLQ 174 L L+ Sbjct: 152 LQLK 155 >gi|322420679|ref|YP_004199902.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Geobacter sp. M18] gi|320127066|gb|ADW14626.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Geobacter sp. M18] Length = 252 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 44/122 (36%), Positives = 64/122 (52%), Gaps = 1/122 (0%) Query: 46 LVTWARTGSLM-WMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTN 104 L + R+ + G C + S +D+ RFG ASPR +D + V G +T Sbjct: 119 LALFGRSLKFRSVVAGGCNACEADSNVLSTIGWDIGRFGLQFVASPRHADALWVTGPVTE 178 Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164 M AL YD +P P+ VI+ G+CA GG + S + G DR++PVD+Y+PGCPP Sbjct: 179 NMREALMMTYDAIPAPKLVIACGACAINGGPFIGSPAAHDGVDRLLPVDLYIPGCPPHPV 238 Query: 165 AL 166 + Sbjct: 239 TI 240 >gi|297567576|ref|YP_003686547.1| hypothetical protein Mesil_3218 [Meiothermus silvanus DSM 9946] gi|297567775|ref|YP_003686746.1| hypothetical protein Mesil_3429 [Meiothermus silvanus DSM 9946] gi|296852025|gb|ADH65039.1| hypothetical protein Mesil_3218 [Meiothermus silvanus DSM 9946] gi|296852224|gb|ADH65238.1| hypothetical protein Mesil_3429 [Meiothermus silvanus DSM 9946] Length = 290 Score = 138 bits (347), Expect = 4e-31, Method: Composition-based stats. Identities = 47/115 (40%), Positives = 74/115 (64%) Query: 66 AVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVIS 125 E+ A P +D+ RFGF+ ASPR +D ++V G ++ M AL R Y PEP+ V++ Sbjct: 142 DTEVALAGNPFHDMSRFGFSVVASPRHADALLVTGPVSQNMREALWRTYQATPEPKGVVA 201 Query: 126 MGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 +G+ A GG + S +VV G D++VPVD+YVPG P ++++G+LLL + ++V Sbjct: 202 VGNEAIGGEIFAESAAVVGGVDQVVPVDVYVPGSPARPASILHGLLLLSGQTQQV 256 >gi|240169554|ref|ZP_04748213.1| oxidoreductase [Mycobacterium kansasii ATCC 12478] Length = 159 Score = 138 bits (347), Expect = 4e-31, Method: Composition-based stats. Identities = 43/117 (36%), Positives = 63/117 (53%) Query: 60 FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119 C VE+ A P YD ERFG ASPR +D ++V G +T MA LR P Sbjct: 43 GSCNGCEVEISGAFGPVYDAERFGARLVASPRHADALLVTGVVTRNMAQPLRNTLAATPA 102 Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKK 176 PR VI+ G CA G + +Y VV ++PVD+ +PGCPP+ + ++ + + ++ Sbjct: 103 PRLVIACGDCALNRGVFGDAYGVVGSVGEVIPVDVEIPGCPPSPDQVVMALRSVTRR 159 >gi|90425976|ref|YP_534346.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Rhodopseudomonas palustris BisB18] gi|90107990|gb|ABD90027.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Rhodopseudomonas palustris BisB18] Length = 144 Score = 138 bits (347), Expect = 5e-31, Method: Composition-based stats. Identities = 44/127 (34%), Positives = 72/127 (56%), Gaps = 4/127 (3%) Query: 50 ARTGSLMWM---TFGLACCAVEMMQASM-PRYDLERFGFAPRASPRQSDVMIVAGTLTNK 105 A S C VE+ + PRYD+ER G SP+ +D++++ G LT + Sbjct: 9 AAKKSPWLYRINAGSCNGCDVELATTACIPRYDVERLGCQYCGSPKHADIVLITGPLTAR 68 Query: 106 MASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEA 165 + + RV+D++P+P+ +++G C GG + SY++ DR +PVD+ VPGCPP +A Sbjct: 69 VKDRVLRVFDEIPDPKVTVAIGICPISGGVFRESYAIEGPIDRYLPVDVNVPGCPPRPQA 128 Query: 166 LIYGILL 172 +I GI + Sbjct: 129 IIEGIAM 135 >gi|212224173|ref|YP_002307409.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit [Thermococcus onnurineus NA1] gi|212009130|gb|ACJ16512.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit [Thermococcus onnurineus NA1] Length = 191 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 44/151 (29%), Positives = 74/151 (49%), Gaps = 18/151 (11%) Query: 52 TGSLMWMT---FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108 SL C +E++ PR D+ER G SPR +D + G +T + Sbjct: 3 KNSLWVFHLNSGSCNGCDIEILNIFAPRNDVERLGIKLVGSPRHADAIAFTGPITRECLP 62 Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI-----------VPVDIYVP 157 + +PEP+ V+++G+CA GGG ++ +YSV+ G + P +++P Sbjct: 63 KVIDALKAVPEPKVVLAIGACACGGGIWYDTYSVIGGVKELYRILKEEYNMEPPATVFIP 122 Query: 158 GCPPTAEALIYGIL----LLQKKIRRVGNVK 184 GCPP EA+IYG+ +L+ K ++ V+ Sbjct: 123 GCPPKPEAIIYGVAVASGMLESKQKKTVYVE 153 >gi|148259621|ref|YP_001233748.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Acidiphilium cryptum JF-5] gi|326402829|ref|YP_004282910.1| putative NADH ubiquinone oxidoreductase [Acidiphilium multivorum AIU301] gi|146401302|gb|ABQ29829.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Acidiphilium cryptum JF-5] gi|325049690|dbj|BAJ80028.1| putative NADH ubiquinone oxidoreductase [Acidiphilium multivorum AIU301] Length = 264 Score = 137 bits (345), Expect = 7e-31, Method: Composition-based stats. Identities = 46/136 (33%), Positives = 75/136 (55%), Gaps = 3/136 (2%) Query: 51 RTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASA 109 R+ + + G C E+ + P Y+L R G SPR +D+++V G +T M Sbjct: 126 RSLHVRHVDAGSCNGCESELQALNNPFYNLHRLGIFFTPSPRFADLLLVTGPVTRAMLEP 185 Query: 110 LRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYG 169 LRR ++ MP PR+V++ G+CA GG + G + +PVD+Y+PGCPP A+I Sbjct: 186 LRRTWEAMPAPRWVMASGTCAVSGGI-APGGPCLSGLEEALPVDLYLPGCPPNPAAIIEA 244 Query: 170 ILL-LQKKIRRVGNVK 184 +L+ L ++ +RV + Sbjct: 245 LLMFLGRRAQRVRGGR 260 >gi|254173900|ref|ZP_04880571.1| hydrogenase-4 component I [Thermococcus sp. AM4] gi|214032149|gb|EEB72980.1| hydrogenase-4 component I [Thermococcus sp. AM4] Length = 187 Score = 137 bits (345), Expect = 7e-31, Method: Composition-based stats. Identities = 44/151 (29%), Positives = 75/151 (49%), Gaps = 18/151 (11%) Query: 52 TGSLMWMT---FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108 SL C +E++ PR D+ER G SPR +D + G +T + Sbjct: 3 KKSLWVFHLNSGSCNGCDIEVLNMFAPRNDVERLGIKLVGSPRHADAIAFTGPITRECLP 62 Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI-----------VPVDIYVP 157 + +P+P+ V+++G+CA GGG ++ +YSV+ G + P +++P Sbjct: 63 KVIDALTAVPDPKVVLAIGACACGGGIWYDTYSVIGGIKELYKILKEEYNIEPPATVFIP 122 Query: 158 GCPPTAEALIYGIL----LLQKKIRRVGNVK 184 GCPP EA+IYG+ +L+KK R+ ++ Sbjct: 123 GCPPKPEAIIYGVAVARGMLEKKQRKQVYIE 153 >gi|225164839|ref|ZP_03727063.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Opitutaceae bacterium TAV2] gi|224800549|gb|EEG18921.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Opitutaceae bacterium TAV2] Length = 294 Score = 136 bits (344), Expect = 9e-31, Method: Composition-based stats. Identities = 43/160 (26%), Positives = 79/160 (49%), Gaps = 3/160 (1%) Query: 10 IISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVT--WARTGSLMWMT-FGLACCA 66 I+ + D + L ++D+ + + R+ L ++ G C Sbjct: 99 IVQTGDHRMATRQRDDLILAPDPSREQIRLAAALDEKLRKLFGRSLKLRQVSAGGCNACE 158 Query: 67 VEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISM 126 ++ +DL RFG ASPR +D +++ G ++ M AL++ +D +P+P+ VI+ Sbjct: 159 ADVNVLGTIGWDLSRFGIQFVASPRHADGLLITGPVSQGMELALKKTWDAVPDPKLVIAT 218 Query: 127 GSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL 166 G+CA GG + + ++ G +VPVD+Y+PGCPP + Sbjct: 219 GACAISGGPFAGNPQILGGASAVVPVDLYIPGCPPHPLTI 258 >gi|325529420|gb|EGD06341.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Burkholderia sp. TJI49] Length = 273 Score = 136 bits (344), Expect = 9e-31, Method: Composition-based stats. Identities = 43/116 (37%), Positives = 63/116 (54%), Gaps = 1/116 (0%) Query: 49 WARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMA 107 + R+ + + G C E+ P Y+L R G SPR +DV++V G +T M Sbjct: 133 FGRSLHVRHVDAGSCNGCESELQALDNPFYNLHRLGIFFTPSPRFADVLLVTGPVTKAMR 192 Query: 108 SALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTA 163 L ++ MP PR+VI+ G+CA GG +Y+ G D ++PVDIY+PGCPP Sbjct: 193 QPLLETWEAMPSPRWVIATGTCAVSGGMTGGNYACGTGLDGVLPVDIYLPGCPPNP 248 >gi|197119557|ref|YP_002139984.1| Ech-hydrogenase-like complex small subunit [Geobacter bemidjiensis Bem] gi|197088917|gb|ACH40188.1| Ech-hydrogenase-related complex, small subunit [Geobacter bemidjiensis Bem] Length = 252 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 46/166 (27%), Positives = 73/166 (43%), Gaps = 9/166 (5%) Query: 2 GLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLM-WMTF 60 +T ++ L D R++ + K L + R+ + Sbjct: 83 AITHTPDARLAANHREELVVRPGDEHRLAQALEKK--------MLSLFGRSLKFRSVVAG 134 Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 G C + S +DL RFG ASPR +D + V G +T M AL Y+ +P P Sbjct: 135 GCNACEADTNVLSTIGWDLGRFGIQFVASPRHADGLWVTGPVTEHMREALLLTYEAIPAP 194 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL 166 + V++ G+CA GG + S G + ++PVD+Y+PGCPP + Sbjct: 195 KLVVACGACAISGGPFRGSPEAHDGVEGMLPVDLYIPGCPPHPVTI 240 >gi|239905427|ref|YP_002952166.1| putative hydrogenase-4 component I [Desulfovibrio magneticus RS-1] gi|239795291|dbj|BAH74280.1| putative hydrogenase-4 component I [Desulfovibrio magneticus RS-1] Length = 258 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 40/114 (35%), Positives = 59/114 (51%) Query: 60 FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119 G C + + +DL RFG ASPR +D + V G +T M A + +P+ Sbjct: 135 GGCNACEADTNVLTTIVFDLGRFGIDFVASPRHADGVAVTGPVTRNMLEATLGTFAAVPD 194 Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLL 173 PR I++G+CA GG + S G +PVD+Y+PGCPP ++ G+L L Sbjct: 195 PRVGIAIGTCAISGGLFAGSPETTGGATPHLPVDLYIPGCPPHPLTILDGLLRL 248 >gi|332295482|ref|YP_004437405.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Thermodesulfobium narugense DSM 14796] gi|332178585|gb|AEE14274.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Thermodesulfobium narugense DSM 14796] Length = 140 Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 34/130 (26%), Positives = 63/130 (48%), Gaps = 3/130 (2%) Query: 46 LVTWARTGSLMWMT---FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL 102 + R+ S C +E++ RYD+ER G SP+ +D+ +V G + Sbjct: 2 IFKIGRSKSPWIFHLNTGSCNGCDIEIVALFASRYDVERLGCKLVGSPKHADICLVTGPV 61 Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162 T + L ++YD +P P+ ++ +G+C+ G + YS+V +++PV YV GC Sbjct: 62 TARSKEPLLKIYDMLPNPKVIVCVGACSISSGVFTDGYSIVGPAHKLIPVTAYVGGCSAH 121 Query: 163 AEALIYGILL 172 + + G+ Sbjct: 122 PKNIFLGLKK 131 >gi|261403244|ref|YP_003247468.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanocaldococcus vulcanius M7] gi|261370237|gb|ACX72986.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanocaldococcus vulcanius M7] Length = 148 Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 48/143 (33%), Positives = 79/143 (55%), Gaps = 11/143 (7%) Query: 46 LVTWART---GSLMWMTFGLACCAVEM-MQASMPRYDLERFGFAPRASPRQSDVMIVAGT 101 L AR +++ T G C +E+ P YD E++ +PR++D++IV G Sbjct: 2 LKKIARKKCIHAMLVYTGGCNACDIEVVNAVFSPYYDAEQYNVFLTFNPREADILIVTGC 61 Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-------SYSVVRGCDRIVPVDI 154 +T +A +LR++Y+++PEP+ VI++G+CA GG Y S + + I+PVD+ Sbjct: 62 VTKVVAESLRQIYEKIPEPKAVIAVGACALMGGVYKNIGGDLGTSEFIAGPVENIIPVDV 121 Query: 155 YVPGCPPTAEALIYGILLLQKKI 177 VPGC P E +I GI+ K+ Sbjct: 122 KVPGCAPRPEDIISGIVKAIPKV 144 >gi|307721952|ref|YP_003893092.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Sulfurimonas autotrophica DSM 16294] gi|306980045|gb|ADN10080.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Sulfurimonas autotrophica DSM 16294] Length = 168 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 39/130 (30%), Positives = 72/130 (55%), Gaps = 1/130 (0%) Query: 49 WARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMA 107 +A + ++ + G C E S P YDLER G ASPR +DVM+++G +T M Sbjct: 39 FAGSLAIRMVDSGSCNACEAECNALSNPYYDLERLGIYFVASPRHADVMLLSGLMTFNMT 98 Query: 108 SALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALI 167 + Y+Q+P+P++VI++G C + ++++ ++ + + ++ GCPP+ ++ Sbjct: 99 PHVLEAYEQIPKPKWVITLGDCPVMAAPFEKTFAIKAPANKHLKITHHITGCPPSPREIM 158 Query: 168 YGILLLQKKI 177 G+L KKI Sbjct: 159 QGLLEFLKKI 168 >gi|224538211|ref|ZP_03678750.1| hypothetical protein BACCELL_03102 [Bacteroides cellulosilyticus DSM 14838] gi|224520179|gb|EEF89284.1| hypothetical protein BACCELL_03102 [Bacteroides cellulosilyticus DSM 14838] Length = 104 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 47/85 (55%), Positives = 68/85 (80%) Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD 153 D+++V GT+TNKMA L+R+YDQMP+P+YV+++G CA GG + SY VV G D+I+PVD Sbjct: 1 DMIMVCGTITNKMAPVLKRLYDQMPDPKYVVAVGGCAVSGGPFKKSYHVVNGVDKILPVD 60 Query: 154 IYVPGCPPTAEALIYGILLLQKKIR 178 +Y+PGCPP EA YG++ LQ+K++ Sbjct: 61 VYIPGCPPRPEAFYYGMMQLQRKVK 85 >gi|297620123|ref|YP_003708228.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanococcus voltae A3] gi|297379100|gb|ADI37255.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanococcus voltae A3] Length = 153 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 41/131 (31%), Positives = 76/131 (58%), Gaps = 4/131 (3%) Query: 46 LVTWARTGSL---MWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL 102 + +AR S+ + T G C +E++ A PRYD+E++G +PR++DV++V G + Sbjct: 2 IKDFARKRSINVCIVNTGGCNGCDIEVVSALAPRYDIEQYGIYVHNNPREADVLVVTGPV 61 Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162 L+ ++D+ PEP+ V+++G+CA G + + V D+I+PV+ +PGCPP Sbjct: 62 VLPWKKRLKEIFDKTPEPKVVVAVGACALSCGIFKEGH-VYGPVDKIIPVNAKLPGCPPR 120 Query: 163 AEALIYGILLL 173 +I ++ + Sbjct: 121 PSEIIEAVVSI 131 >gi|218884334|ref|YP_002428716.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Desulfurococcus kamchatkensis 1221n] gi|218765950|gb|ACL11349.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Desulfurococcus kamchatkensis 1221n] Length = 156 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 44/141 (31%), Positives = 72/141 (51%), Gaps = 13/141 (9%) Query: 52 TGSLMWMT---FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108 S+ C +E++ A P +D ERFG SPR +DV+++ G +T + Sbjct: 6 KKSIWVFHLNTGSCNACDIEILDALTPFHDAERFGVKLVGSPRHADVILLTGPITIETLP 65 Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGC--------DRIVPVD--IYVPG 158 + + P PR ++++GSC GGG +H +YS + G ++ + VD YVPG Sbjct: 66 KVINAIEAAPRPRIIVALGSCGVGGGIWHDTYSTIGGVRSLKKILDEKGIQVDGIYYVPG 125 Query: 159 CPPTAEALIYGILLLQKKIRR 179 CP EAL+Y I L++ + + Sbjct: 126 CPIRPEALLYAIALIKGLVSK 146 >gi|296241798|ref|YP_003649285.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Thermosphaera aggregans DSM 11486] gi|296094382|gb|ADG90333.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Thermosphaera aggregans DSM 11486] Length = 156 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 46/144 (31%), Positives = 72/144 (50%), Gaps = 17/144 (11%) Query: 52 TGSLMWMT---FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108 S+ C +E++ P +D ERFG SPR +D +++ G +T + Sbjct: 6 KKSIWVFHLNTGSCNACDIEILDVLTPFHDAERFGVKLVTSPRHADAILLTGPITAEALP 65 Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGC--------DRIVPVD--IYVPG 158 + + P PR VI++GSC GGG +H +YS + G ++ V VD YVPG Sbjct: 66 KVINAIEAAPRPRVVIALGSCGVGGGIWHDTYSTIGGIKGLQKILEEKGVKVDAFYYVPG 125 Query: 159 CPPTAEALIYGIL----LLQKKIR 178 CP EA++Y + L+QKK++ Sbjct: 126 CPIRPEAILYAVALFKGLVQKKVK 149 >gi|320100262|ref|YP_004175854.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfurococcus mucosus DSM 2162] gi|319752614|gb|ADV64372.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfurococcus mucosus DSM 2162] Length = 152 Score = 135 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 46/141 (32%), Positives = 72/141 (51%), Gaps = 13/141 (9%) Query: 52 TGSLMWMT---FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108 S+ C +E++ A P +D ERFG SPR +DV+++ G +T + Sbjct: 2 KKSIWVYHLNTGSCNACDIEILDALTPFHDAERFGVKLVGSPRHADVILMTGPVTLETLP 61 Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGC--------DRIVPVD--IYVPG 158 + + P PR +I++GSC GGG +H +YS + G +R + VD YVPG Sbjct: 62 KVLNAIEAAPRPRIIIALGSCGVGGGIWHDTYSTIGGIKGLEKMLKERGIRVDAIYYVPG 121 Query: 159 CPPTAEALIYGILLLQKKIRR 179 CP EAL+Y I L++ + + Sbjct: 122 CPIRPEALLYAIALIKGLVAK 142 >gi|253699704|ref|YP_003020893.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Geobacter sp. M21] gi|251774554|gb|ACT17135.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Geobacter sp. M21] Length = 252 Score = 135 bits (339), Expect = 3e-30, Method: Composition-based stats. Identities = 40/122 (32%), Positives = 62/122 (50%), Gaps = 1/122 (0%) Query: 46 LVTWARTGSLM-WMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTN 104 L + R+ + G C + S +D+ RFG ASPR +D + V G +T Sbjct: 119 LSLFGRSLKFRSVVAGGCNACEADTNVLSTIGWDIGRFGIQFVASPRHADGLWVTGPVTE 178 Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164 M AL Y+ +P P+ V++ G+CA GG + S G + ++PVD+Y+PGCPP Sbjct: 179 HMREALLMTYEAIPAPKLVVACGACAISGGPFRGSPEAHDGVEGMLPVDLYIPGCPPHPV 238 Query: 165 AL 166 + Sbjct: 239 TI 240 >gi|325959025|ref|YP_004290491.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanobacterium sp. AL-21] gi|325330457|gb|ADZ09519.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanobacterium sp. AL-21] Length = 149 Score = 135 bits (339), Expect = 3e-30, Method: Composition-based stats. Identities = 41/135 (30%), Positives = 71/135 (52%), Gaps = 4/135 (2%) Query: 43 VDQLVTWARTGSLMWM---TFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVA 99 ++ L R S+ T G C +E++ PRYDLE++G +PR++DV+++ Sbjct: 2 LNGLKDIIRKSSIHVCLVNTGGCNGCDIEVVALLSPRYDLEQYGIYVHNNPREADVLLIT 61 Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGCDRIVPVDIYVPG 158 G L + L+++Y + PEP+ V+++G+C G ++ SV +PVD V G Sbjct: 62 GALAEQWKDKLQKIYAKTPEPKVVVAIGNCPLTGDVFNQEGSSVNAPVSDYIPVDAEVSG 121 Query: 159 CPPTAEALIYGILLL 173 CPP ++ IL + Sbjct: 122 CPPRPTEILAAILAV 136 >gi|120602015|ref|YP_966415.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Desulfovibrio vulgaris DP4] gi|120562244|gb|ABM27988.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Desulfovibrio vulgaris DP4] Length = 144 Score = 135 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 42/127 (33%), Positives = 69/127 (54%), Gaps = 4/127 (3%) Query: 53 GSLMWM---TFGLACCAVEMMQASM-PRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108 S C VE+ + PRYD+ER G SPR +D++++ G LT ++ Sbjct: 10 RSPWLYRINAGSCNGCDVELATTACIPRYDVERLGCKYCGSPRHADIVLITGPLTARVKD 69 Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168 + RV+D++P P+ +++G C GG + Y + DR +P+DI VPGCPP +A+I Sbjct: 70 KVLRVWDEIPAPKITVAVGICPVSGGVFRDGYPIEGPLDRYIPIDINVPGCPPRPQAIIE 129 Query: 169 GILLLQK 175 G++ + Sbjct: 130 GVVKARD 136 >gi|289192361|ref|YP_003458302.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanocaldococcus sp. FS406-22] gi|288938811|gb|ADC69566.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanocaldococcus sp. FS406-22] Length = 148 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 48/143 (33%), Positives = 77/143 (53%), Gaps = 11/143 (7%) Query: 46 LVTWARTGSLMWM---TFGLACCAVEM-MQASMPRYDLERFGFAPRASPRQSDVMIVAGT 101 L AR + M T G C +E+ P YD E++ +PR++D+++V G Sbjct: 2 LKKIARKKCIHVMLVYTGGCNACDIEVVNAIFSPFYDAEQYNVFLTFNPREADILVVTGC 61 Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-------SYSVVRGCDRIVPVDI 154 +T +A +LR++Y+++PEP+ V+++G+CA GG Y S V + I+PVD+ Sbjct: 62 VTKVVAESLRKIYEKIPEPKAVVAVGACALMGGVYKNIGGDLGTSDFVAGPVENIIPVDV 121 Query: 155 YVPGCPPTAEALIYGILLLQKKI 177 VPGC P E +I GI K+ Sbjct: 122 KVPGCAPRPEDIIAGIAKAISKV 144 >gi|228903773|ref|ZP_04067890.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors [Bacillus thuringiensis IBL 4222] gi|228924034|ref|ZP_04087310.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228942446|ref|ZP_04104983.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228975378|ref|ZP_04135934.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|229147840|ref|ZP_04276181.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors [Bacillus cereus BDRD-ST24] gi|229199422|ref|ZP_04326086.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors [Bacillus cereus m1293] gi|228584050|gb|EEK42204.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors [Bacillus cereus m1293] gi|228635490|gb|EEK91979.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors [Bacillus cereus BDRD-ST24] gi|228784360|gb|EEM32383.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228817188|gb|EEM63276.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228835524|gb|EEM80889.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228855862|gb|EEN00405.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors [Bacillus thuringiensis IBL 4222] Length = 95 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 55/83 (66%), Positives = 69/83 (83%) Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155 MIV+GT+T KMA +RR+YDQMPEP++VI+MGSCA GG Y SY+VV+G D+IVPVD+Y Sbjct: 1 MIVSGTVTKKMAPIVRRLYDQMPEPKWVIAMGSCATAGGPYVNSYAVVKGVDQIVPVDVY 60 Query: 156 VPGCPPTAEALIYGILLLQKKIR 178 +PGCPP ALIYGI L++KIR Sbjct: 61 IPGCPPNPAALIYGINKLKEKIR 83 >gi|46580693|ref|YP_011501.1| hydrogenase subunit CooL [Desulfovibrio vulgaris str. Hildenborough] gi|46450112|gb|AAS96761.1| hydrogenase, CooL subunit, putative [Desulfovibrio vulgaris str. Hildenborough] gi|311234412|gb|ADP87266.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfovibrio vulgaris RCH1] Length = 144 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 42/127 (33%), Positives = 69/127 (54%), Gaps = 4/127 (3%) Query: 53 GSLMWM---TFGLACCAVEMMQASM-PRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108 S C VE+ + PRYD+ER G SPR +D++++ G LT ++ Sbjct: 10 RSPWLYRINAGSCNGCDVELATTACIPRYDVERLGCKYCGSPRHADIVLITGPLTARVKD 69 Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168 + RV+D++P P+ +++G C GG + Y + DR +P+DI VPGCPP +A+I Sbjct: 70 KVLRVWDEIPAPKITVAVGICPVSGGVFRDGYPIEGPLDRYIPIDINVPGCPPRPQAIIE 129 Query: 169 GILLLQK 175 G++ + Sbjct: 130 GVVKARD 136 >gi|228994019|ref|ZP_04153920.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors [Bacillus pseudomycoides DSM 12442] gi|229000087|ref|ZP_04159657.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors [Bacillus mycoides Rock3-17] gi|228759624|gb|EEM08600.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors [Bacillus mycoides Rock3-17] gi|228765667|gb|EEM14320.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors [Bacillus pseudomycoides DSM 12442] Length = 95 Score = 134 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 55/83 (66%), Positives = 69/83 (83%) Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155 MIV+GT+T KMA +RR+YDQMPEP++VI+MGSCA GG Y SY+VV+G D+IVPVD+Y Sbjct: 1 MIVSGTVTKKMAPIVRRLYDQMPEPKWVIAMGSCATAGGPYVNSYAVVKGVDQIVPVDVY 60 Query: 156 VPGCPPTAEALIYGILLLQKKIR 178 +PGCPP ALIYGI L++KIR Sbjct: 61 IPGCPPNPAALIYGINKLKEKIR 83 >gi|229014468|ref|ZP_04171586.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors [Bacillus mycoides DSM 2048] gi|228746818|gb|EEL96703.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors [Bacillus mycoides DSM 2048] Length = 95 Score = 134 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 55/83 (66%), Positives = 69/83 (83%) Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155 MIV+GT+T KMA +RR+YDQMPEP++VI+MGSCA GG Y SY+VV+G D+IVPVD+Y Sbjct: 1 MIVSGTVTKKMAPIVRRLYDQMPEPKWVIAMGSCATAGGPYVNSYAVVKGVDQIVPVDVY 60 Query: 156 VPGCPPTAEALIYGILLLQKKIR 178 +PGCPP ALIYGI L++KIR Sbjct: 61 IPGCPPNPAALIYGINKLKEKIR 83 >gi|303244684|ref|ZP_07331016.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanothermococcus okinawensis IH1] gi|302484992|gb|EFL47924.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanothermococcus okinawensis IH1] Length = 148 Score = 134 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 46/143 (32%), Positives = 77/143 (53%), Gaps = 11/143 (7%) Query: 46 LVTWARTGSLMWM---TFGLACCAVEMMQA-SMPRYDLERFGFAPRASPRQSDVMIVAGT 101 + AR + M T G C +E++ P YD E++ +PR++D+++V+G Sbjct: 2 VKKHARKKCIHIMVAYTGGCNGCDIEVVNCVLSPFYDAEQYNVLLTWNPREADILVVSGC 61 Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-------SYSVVRGCDRIVPVDI 154 +T M L+++Y+ +PEP+ V+++G CA GG Y S + + I+PVD+ Sbjct: 62 VTKVMTEPLKKIYEAIPEPKAVVAVGCCALMGGVYGNIGGDLGTSDWIDGPVENIIPVDV 121 Query: 155 YVPGCPPTAEALIYGILLLQKKI 177 VPGCPP E +I GI+ K+ Sbjct: 122 KVPGCPPRPEDVIQGIVQALPKV 144 >gi|212704381|ref|ZP_03312509.1| hypothetical protein DESPIG_02436 [Desulfovibrio piger ATCC 29098] gi|212672102|gb|EEB32585.1| hypothetical protein DESPIG_02436 [Desulfovibrio piger ATCC 29098] Length = 265 Score = 134 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 39/114 (34%), Positives = 61/114 (53%) Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 G C + YDL +FG ASPR +D ++V G ++ M A+ + +PEP Sbjct: 146 GCNACEADTNVLGTLVYDLGKFGINFVASPRHADGILVTGPVSRNMREAVLATWAAVPEP 205 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQ 174 R I++GSCA GG + S G + V ++VPGCPP+ +++ G+L L+ Sbjct: 206 RIAIAVGSCAISGGLFADSDECCGGLPPLCDVQLFVPGCPPSPWSILDGLLRLK 259 >gi|212224722|ref|YP_002307958.1| Hydrogenase 4, component I or formate hydrogen lyase, subunit 7 [Thermococcus onnurineus NA1] gi|212009679|gb|ACJ17061.1| Hydrogenase 4, component I or formate hydrogen lyase, subunit 7 [Thermococcus onnurineus NA1] Length = 273 Score = 134 bits (337), Expect = 7e-30, Method: Composition-based stats. Identities = 44/157 (28%), Positives = 69/157 (43%), Gaps = 31/157 (19%) Query: 53 GSLMWMT---FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASA 109 S+ C +E++ P YD+ERFG SPR + ++V+G LT + Sbjct: 8 RSIWVFHLNTGSCNGCDIEIIDVLTPFYDVERFGIKLVGSPRHAHALLVSGPLTRQAYYG 67 Query: 110 LRRVYDQM-PEPRYVISMGSCANGGGYYHYSYSVVRGC---------------------- 146 + M PEPR ++++G+C GG ++ Y V R Sbjct: 68 AKETIKAMPPEPRVIVAIGTCTCSGGIFYNGYPVYRRPESGREGSEYPRRGGIAELIADL 127 Query: 147 ----DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179 +++ PV IY+PGCPP E +IYGI L + + Sbjct: 128 RDEGEKVGPV-IYIPGCPPRPEEIIYGIAQLVGLVEK 163 >gi|159905433|ref|YP_001549095.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanococcus maripaludis C6] gi|159886926|gb|ABX01863.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanococcus maripaludis C6] Length = 147 Score = 134 bits (337), Expect = 7e-30, Method: Composition-based stats. Identities = 50/143 (34%), Positives = 82/143 (57%), Gaps = 11/143 (7%) Query: 46 LVTWARTGSLMWM---TFGLACCAVEMMQA-SMPRYDLERFGFAPRASPRQSDVMIVAGT 101 L +R ++ M T G C +E++ P YD E++ +PR++DV++V G Sbjct: 2 LKELSRKKNIHIMLVYTGGCNGCDIEVVNCVLSPFYDAEQYNVFLTWNPREADVLVVTGC 61 Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-------SYSVVRGCDRIVPVDI 154 +T ++++L+++YD++PEP+ VI+ G+CA GG Y+ S V + I+PVD+ Sbjct: 62 VTKAVSASLKKIYDEIPEPKAVIAAGACALMGGVYNNIGGDLGTSTFVDGPVENIIPVDM 121 Query: 155 YVPGCPPTAEALIYGILLLQKKI 177 VPGCPP E +I GI+ KI Sbjct: 122 KVPGCPPRPEDIITGIVKALPKI 144 >gi|134046813|ref|YP_001098298.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Methanococcus maripaludis C5] gi|132664438|gb|ABO36084.1| membrane-bound hydrogenase subunit ehbM [Methanococcus maripaludis C5] Length = 147 Score = 134 bits (337), Expect = 7e-30, Method: Composition-based stats. Identities = 49/143 (34%), Positives = 82/143 (57%), Gaps = 11/143 (7%) Query: 46 LVTWARTGSLMWM---TFGLACCAVEMMQA-SMPRYDLERFGFAPRASPRQSDVMIVAGT 101 L +R ++ M T G C +E++ P YD E++ +PR++DV++V G Sbjct: 2 LKELSRKKNIHIMLVYTGGCNGCDIEVVNCVLSPFYDAEQYNVFLTWNPREADVLVVTGC 61 Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-------SYSVVRGCDRIVPVDI 154 +T ++++L+++YD++PEP+ VI+ G+CA GG Y+ S + + I+PVD+ Sbjct: 62 VTKAVSASLKKIYDEIPEPKAVIAAGACALMGGVYNNIGGDLGTSTFIDGPVENIIPVDM 121 Query: 155 YVPGCPPTAEALIYGILLLQKKI 177 VPGCPP E +I GI+ KI Sbjct: 122 KVPGCPPRPEDIISGIVKALPKI 144 >gi|251772759|gb|EES53321.1| putative hydrogenase-3 subunit (HycG) [Leptospirillum ferrodiazotrophum] Length = 163 Score = 133 bits (336), Expect = 7e-30, Method: Composition-based stats. Identities = 42/122 (34%), Positives = 66/122 (54%), Gaps = 1/122 (0%) Query: 52 TGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASAL 110 + S+ + G C +E+ P L GF+ ASPR +D+++V G ++ M AL Sbjct: 33 SASIRHVDAGSCNGCELELWALENPVTSLSSLGFSFVASPRHADILLVTGPVSCHMKEAL 92 Query: 111 RRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGI 170 + MP P+ V+++G CA GG + SY+ G I+P D+ V GCPP EA++ G+ Sbjct: 93 ETTHQAMPAPKRVLAVGDCAISGGVFRGSYATHDGLSSILPPDVTVHGCPPPPEAIVEGV 152 Query: 171 LL 172 L Sbjct: 153 LR 154 >gi|15669553|ref|NP_248366.1| formate hydrogenlyase subunit 7 [Methanocaldococcus jannaschii DSM 2661] gi|41018429|sp|Q58758|Y1363_METJA RecName: Full=Uncharacterized protein MJ1363 gi|1592007|gb|AAB99371.1| formate hydrogenlyase, subunit 7 [Methanocaldococcus jannaschii DSM 2661] Length = 151 Score = 133 bits (336), Expect = 9e-30, Method: Composition-based stats. Identities = 47/143 (32%), Positives = 78/143 (54%), Gaps = 11/143 (7%) Query: 46 LVTWARTGSLMWM---TFGLACCAVEM-MQASMPRYDLERFGFAPRASPRQSDVMIVAGT 101 + AR + M T G C +E+ P YD E++ +PR++D+++V G Sbjct: 5 IKKIARKKCIHVMLVYTGGCNACDIEVVNAIFSPFYDAEQYNVFLTFNPREADILVVTGC 64 Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-------SYSVVRGCDRIVPVDI 154 +T +A +LR++Y+++PEP+ V+++G+CA GG Y S V + I+PVD+ Sbjct: 65 VTKVVAESLRKIYEKIPEPKAVVAVGACALMGGVYKNIGGDLGTSDFVAGPVENIIPVDV 124 Query: 155 YVPGCPPTAEALIYGILLLQKKI 177 VPGC P E +I GI+ K+ Sbjct: 125 KVPGCAPRPEDIIAGIVKALPKV 147 >gi|296136161|ref|YP_003643403.1| hypothetical protein Tint_1703 [Thiomonas intermedia K12] gi|295796283|gb|ADG31073.1| hypothetical protein Tint_1703 [Thiomonas intermedia K12] Length = 273 Score = 133 bits (336), Expect = 9e-30, Method: Composition-based stats. Identities = 41/121 (33%), Positives = 65/121 (53%), Gaps = 1/121 (0%) Query: 44 DQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL 102 + + ++ + + G C E+ P Y+L R G SPR +D+++V G + Sbjct: 127 QAMKGFGKSLHIRHVDAGSCNGCESELQALLNPFYNLHRLGVFFTPSPRFADLLLVTGPV 186 Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162 T M L R Y+ MP+PR+V++ G+CA GG Y+ G D I+PVD+++PGCPP Sbjct: 187 TAAMREPLLRTYEAMPQPRWVMAAGTCATGGSTNGGGYACHEGLDGILPVDVWLPGCPPN 246 Query: 163 A 163 Sbjct: 247 P 247 >gi|317485983|ref|ZP_07944838.1| NADH ubiquinone oxidoreductase [Bilophila wadsworthia 3_1_6] gi|316922756|gb|EFV43987.1| NADH ubiquinone oxidoreductase [Bilophila wadsworthia 3_1_6] Length = 144 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 42/125 (33%), Positives = 70/125 (56%), Gaps = 4/125 (3%) Query: 52 TGSLM---WMTFGLACCAVEMMQASM-PRYDLERFGFAPRASPRQSDVMIVAGTLTNKMA 107 T S C VE+ + RYD+ER G SPR +D++++ G LT ++ Sbjct: 9 TRSPWLFRINAGSCNGCDVELATTACISRYDVERLGCKYCGSPRHADIVLITGPLTARVK 68 Query: 108 SALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALI 167 + RV++++PEP+ +++G C GG + YS+ DR +P+D+ VPGCPP +A++ Sbjct: 69 DKVLRVWNEIPEPKVTVAVGICPISGGVFREGYSIEGPVDRYLPIDVNVPGCPPRPQAIM 128 Query: 168 YGILL 172 G+L Sbjct: 129 EGVLE 133 >gi|78221590|ref|YP_383337.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Geobacter metallireducens GS-15] gi|78192845|gb|ABB30612.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Geobacter metallireducens GS-15] Length = 262 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 41/120 (34%), Positives = 66/120 (55%) Query: 60 FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119 G C + S +DL RFG ASPR +D + + G +T M AL + ++ +PE Sbjct: 143 GGCNACEADTNVLSTVGFDLGRFGIQFVASPRHADGIFITGPVTENMHLALLKTWEAIPE 202 Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179 P+ I+ G+CA GG + S V G D ++P+D+Y+PGCPP ++ G+L + ++ Sbjct: 203 PKIAIAAGACAINGGPFIDSPDVHNGADGLIPIDLYIPGCPPHPLTILDGLLRILGRLEE 262 >gi|45359185|ref|NP_988742.1| energy conserving hydrogenase B small subunit [Methanococcus maripaludis S2] gi|45048060|emb|CAF31178.1| energy conserving hydrogenase B small subunit [Methanococcus maripaludis S2] Length = 147 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 48/143 (33%), Positives = 82/143 (57%), Gaps = 11/143 (7%) Query: 46 LVTWARTGSLMWM---TFGLACCAVEMMQA-SMPRYDLERFGFAPRASPRQSDVMIVAGT 101 L +R ++ M T G C +E++ P YD E++ +PR++DV++V G Sbjct: 2 LKELSRKKNIHVMLVYTGGCNGCDIEVVNCVLSPFYDAEQYNVFLTWNPREADVLVVTGC 61 Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-------SYSVVRGCDRIVPVDI 154 +T ++++L+++YD++PEP+ V++ G+CA GG Y+ S + + I+PVD+ Sbjct: 62 VTKAVSASLKKIYDEIPEPKAVVAAGACALMGGVYNNIGADLGTSTFIDGPVENIIPVDV 121 Query: 155 YVPGCPPTAEALIYGILLLQKKI 177 VPGCPP E +I GI+ KI Sbjct: 122 KVPGCPPRPEDVITGIVKALPKI 144 >gi|150402793|ref|YP_001330087.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanococcus maripaludis C7] gi|150033823|gb|ABR65936.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanococcus maripaludis C7] Length = 147 Score = 133 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 48/143 (33%), Positives = 81/143 (56%), Gaps = 11/143 (7%) Query: 46 LVTWARTGSLMWM---TFGLACCAVEMMQA-SMPRYDLERFGFAPRASPRQSDVMIVAGT 101 L +R ++ M T G C +E++ P YD E++ +PR++DV++V G Sbjct: 2 LKELSRKKNIHVMLVYTGGCNGCDIEVVNCVLSPFYDAEQYNVFLTWNPREADVLVVTGC 61 Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-------SYSVVRGCDRIVPVDI 154 +T ++++L+++YD++PEP+ V++ G+CA GG Y S + + I+PVD+ Sbjct: 62 VTKAVSASLKKIYDEIPEPKAVVAAGACALMGGVYKNIGADLGTSSFIDGPVENIIPVDV 121 Query: 155 YVPGCPPTAEALIYGILLLQKKI 177 VPGCPP E +I GI+ KI Sbjct: 122 KVPGCPPRPEDVITGIVKALPKI 144 >gi|150399680|ref|YP_001323447.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanococcus vannielii SB] gi|150012383|gb|ABR54835.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanococcus vannielii SB] Length = 147 Score = 133 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 47/143 (32%), Positives = 81/143 (56%), Gaps = 11/143 (7%) Query: 46 LVTWARTGSLMWM---TFGLACCAVEMMQA-SMPRYDLERFGFAPRASPRQSDVMIVAGT 101 L +R ++ M T G C +E++ P YD E++ +PR++D+++V G Sbjct: 2 LKELSRKKNIHIMLVYTGGCNGCDIEVVNCVLSPFYDAEQYNVFLTWNPREADILVVTGC 61 Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-------SYSVVRGCDRIVPVDI 154 +T + +L+++Y+++P P+ V+S+G+CA GG Y+ S V ++I+PVD+ Sbjct: 62 VTKSVTKSLKKIYEEIPNPKAVVSVGACALMGGVYNNIGADLGTSTFVDGPVEKIIPVDV 121 Query: 155 YVPGCPPTAEALIYGILLLQKKI 177 VPGCPP E +I GI+ KI Sbjct: 122 KVPGCPPRPEDVITGIVKALPKI 144 >gi|119718689|ref|YP_925654.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Nocardioides sp. JS614] gi|119539350|gb|ABL83967.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Nocardioides sp. JS614] Length = 162 Score = 133 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 42/114 (36%), Positives = 60/114 (52%) Query: 60 FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119 C +E+ A P YD ER+G ASPR +DV++V G +T+ M LRR + P Sbjct: 46 GSCNGCEIEVGGAFGPVYDAERYGARLVASPRHADVVLVTGVVTHNMLEPLRRTVEATPR 105 Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLL 173 PR V+++G CA G + Y V V VD+ VPGCPP A++ + + Sbjct: 106 PRLVLAVGDCARNCGAFKGGYGVAGAVHDAVDVDLEVPGCPPEPAAIVDALRRV 159 >gi|2665481|gb|AAB88386.1| formate hydrogenlyase subunit 7 [Methanococcus maripaludis] Length = 147 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 49/143 (34%), Positives = 82/143 (57%), Gaps = 11/143 (7%) Query: 46 LVTWARTGSLMWM---TFGLACCAVEMMQA-SMPRYDLERFGFAPRASPRQSDVMIVAGT 101 L +R ++ M T G C +E++ P YD E++ +PR++DV++V G Sbjct: 2 LKELSRKKNIHVMLVYTGGCNGCDIEVVNCVLSPFYDAEQYNVFLTWNPREADVLVVTGC 61 Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-------SYSVVRGCDRIVPVDI 154 +T ++++L+++YD++PEP+ V++ G+CA GG Y+ S + + I+PVDI Sbjct: 62 VTKAVSASLKKIYDEIPEPKAVVAAGACALMGGVYNNIGADLGTSTFIDGPVENIIPVDI 121 Query: 155 YVPGCPPTAEALIYGILLLQKKI 177 VPGCPP E +I GI+ KI Sbjct: 122 KVPGCPPRPEDVITGIVKALPKI 144 >gi|150401781|ref|YP_001325547.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanococcus aeolicus Nankai-3] gi|150014484|gb|ABR56935.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanococcus aeolicus Nankai-3] Length = 146 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 46/139 (33%), Positives = 74/139 (53%), Gaps = 11/139 (7%) Query: 50 ARTGSLMWM---TFGLACCAVEMMQA-SMPRYDLERFGFAPRASPRQSDVMIVAGTLTNK 105 AR ++ M T G C ++++ P YD E++ +PR++D+++V+G +T Sbjct: 6 ARKKNIHIMVAYTGGCNGCDIDIVNCVLSPFYDAEQYNVFLTWNPREADILLVSGCVTKV 65 Query: 106 MASALRRVYDQMPEPRYVISMGSCANGGGYYHY-------SYSVVRGCDRIVPVDIYVPG 158 M L+ +Y+ +PEP+ V+++G CA GG Y S + I+PVDI VPG Sbjct: 66 MTEPLKEIYEAIPEPKAVVAVGCCALMGGVYANIGGDLGTSDFIDGPVKNIIPVDINVPG 125 Query: 159 CPPTAEALIYGILLLQKKI 177 C P E +I GI+ KI Sbjct: 126 CSPRPEDIIQGIVQALPKI 144 >gi|89902050|ref|YP_524521.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Rhodoferax ferrireducens T118] gi|89346787|gb|ABD70990.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Rhodoferax ferrireducens T118] Length = 254 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 44/127 (34%), Positives = 71/127 (55%), Gaps = 1/127 (0%) Query: 48 TWARTGSLMWMT-FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKM 106 + R+ L ++ G + C +E+ S +DL R+G ASPR +D ++++G +T M Sbjct: 123 RFGRSLKLRSVSAGGCSGCEMEINALSNVNFDLGRYGIDIVASPRHADALVLSGPITRNM 182 Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL 166 A AL+ +D +PEP+ VI++G+CA GG + S ++ R +YVPGCP Sbjct: 183 AQALQICWDAIPEPKLVIAVGACAISGGVFADSDALDRQFLDNFKPALYVPGCPAHPLTF 242 Query: 167 IYGILLL 173 I GI+ L Sbjct: 243 ISGIMDL 249 >gi|256810104|ref|YP_003127473.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanocaldococcus fervens AG86] gi|256793304|gb|ACV23973.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanocaldococcus fervens AG86] Length = 147 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 46/139 (33%), Positives = 77/139 (55%), Gaps = 11/139 (7%) Query: 50 ARTGSLMWM---TFGLACCAVEM-MQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNK 105 AR + M T G C +E+ P YD E++ +PR++D+++V G +T Sbjct: 6 ARKKCIHVMLVYTGGCNACDIEVVNAIFSPFYDAEQYNVFLTFNPREADILVVTGCVTKT 65 Query: 106 MASALRRVYDQMPEPRYVISMGSCANGGGYYHY-------SYSVVRGCDRIVPVDIYVPG 158 +A +L+++Y+++PEP+ V+++G+CA GG Y S V + I+PVD+ VPG Sbjct: 66 VAESLKKIYEKIPEPKAVVAVGACALMGGVYKNIGGDLGTSDFVAGPVENIIPVDVKVPG 125 Query: 159 CPPTAEALIYGILLLQKKI 177 C P E +I GI+ K+ Sbjct: 126 CAPRPEDIITGIIRALPKV 144 >gi|15679250|ref|NP_276367.1| formate hydrogenlyase, subunit 7 [Methanothermobacter thermautotrophicus str. Delta H] gi|2622351|gb|AAB85728.1| formate hydrogenlyase, subunit 7 [Methanothermobacter thermautotrophicus str. Delta H] Length = 148 Score = 131 bits (329), Expect = 5e-29, Method: Composition-based stats. Identities = 44/142 (30%), Positives = 75/142 (52%), Gaps = 10/142 (7%) Query: 46 LVTWARTGSLMWM---TFGLACCAVEM-MQASMPRYDLERFGFAPRASPRQSDVMIVAGT 101 L +++R ++ M T G C +E+ P+YD E++ +PR++DV+IV G Sbjct: 3 LKSFSRARAVHAMLVYTGGCNGCDIEIVNAVFSPKYDAEQYKIFLTWNPREADVLIVTGP 62 Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY------SYSVVRGCDRIVPVDIY 155 +T + L+ +Y+ +PEP+ VI+ G+CA GG Y S + D+++PVD Sbjct: 63 VTKQNEEPLKAIYNAIPEPKAVIAAGACALMGGVYKNIHGDIPSEEICGPVDKVIPVDAK 122 Query: 156 VPGCPPTAEALIYGILLLQKKI 177 VPGC E ++ G + K+ Sbjct: 123 VPGCAVRPEDVLAGAVAALPKL 144 >gi|115948823|ref|XP_001196585.1| PREDICTED: similar to mitochondrial complex I subunit NDUFS7, partial [Strongylocentrotus purpuratus] Length = 82 Score = 131 bits (329), Expect = 6e-29, Method: Composition-based stats. Identities = 61/76 (80%), Positives = 66/76 (86%) Query: 53 GSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRR 112 SL MTFGLACCAVEMM + PRYD++RFG RASPRQSDVMIVAGTLTNKMA ALR+ Sbjct: 7 SSLWPMTFGLACCAVEMMHFAAPRYDMDRFGVVFRASPRQSDVMIVAGTLTNKMAPALRK 66 Query: 113 VYDQMPEPRYVISMGS 128 VYDQMPEPR+VISMGS Sbjct: 67 VYDQMPEPRWVISMGS 82 >gi|162453072|ref|YP_001615439.1| NAD-dependent dehydrogenase subunit [Sorangium cellulosum 'So ce 56'] gi|161163654|emb|CAN94959.1| NAD-dependent dehydrogenase subunit [Sorangium cellulosum 'So ce 56'] Length = 250 Score = 130 bits (328), Expect = 6e-29, Method: Composition-based stats. Identities = 42/126 (33%), Positives = 71/126 (56%), Gaps = 1/126 (0%) Query: 49 WARTGSLMWMT-FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMA 107 + R+ + ++ G C +E+ + +D++RFG ASPR +D +++ G LT M Sbjct: 121 FGRSLKMRQVSAGGCNACELELNAVTNVNFDVQRFGIEWVASPRHADALVLTGPLTRNMK 180 Query: 108 SALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALI 167 A++ +D MP+PR+++++G+CA GG Y + V RG V +YVPGCPP + Sbjct: 181 EAVQLAWDAMPDPRFIVAVGACAISGGLYDGAAGVDRGFLERVGPSLYVPGCPPHPLTFV 240 Query: 168 YGILLL 173 +L L Sbjct: 241 NAVLDL 246 >gi|297619767|ref|YP_003707872.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanococcus voltae A3] gi|297378744|gb|ADI36899.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanococcus voltae A3] Length = 147 Score = 130 bits (328), Expect = 7e-29, Method: Composition-based stats. Identities = 46/143 (32%), Positives = 78/143 (54%), Gaps = 11/143 (7%) Query: 46 LVTWARTGSLMWM---TFGLACCAVEMMQA-SMPRYDLERFGFAPRASPRQSDVMIVAGT 101 L +R + M T G C +E++ P YD E++ +PR++D+++V G Sbjct: 2 LKEISRKKCIHVMLVYTGGCNGCDIEVVNCVLSPYYDAEQYNVFLTWNPREADILVVTGC 61 Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-------SYSVVRGCDRIVPVDI 154 +T + ++L+++Y++MPEP+ V++ G+CA GG Y S + I+PVD+ Sbjct: 62 VTKTITASLKKIYEEMPEPKAVVAAGACALMGGVYGNIGADLGTSDFIDGPVKNIIPVDV 121 Query: 155 YVPGCPPTAEALIYGILLLQKKI 177 VPGCPP E +I GI+ K+ Sbjct: 122 NVPGCPPRPEDVITGIVKAIPKL 144 >gi|258541876|ref|YP_003187309.1| NADH-ubiquinone oxidoreductase 20 kDa subunit [Acetobacter pasteurianus IFO 3283-01] gi|256632954|dbj|BAH98929.1| NADH-ubiquinone oxidoreductase 20 kDa subunit [Acetobacter pasteurianus IFO 3283-01] gi|256636011|dbj|BAI01980.1| NADH-ubiquinone oxidoreductase 20 kDa subunit [Acetobacter pasteurianus IFO 3283-03] gi|256639066|dbj|BAI05028.1| NADH-ubiquinone oxidoreductase 20 kDa subunit [Acetobacter pasteurianus IFO 3283-07] gi|256642120|dbj|BAI08075.1| NADH-ubiquinone oxidoreductase 20 kDa subunit [Acetobacter pasteurianus IFO 3283-22] gi|256645175|dbj|BAI11123.1| NADH-ubiquinone oxidoreductase 20 kDa subunit [Acetobacter pasteurianus IFO 3283-26] gi|256648230|dbj|BAI14171.1| NADH-ubiquinone oxidoreductase 20 kDa subunit [Acetobacter pasteurianus IFO 3283-32] gi|256651283|dbj|BAI17217.1| NADH-ubiquinone oxidoreductase 20 kDa subunit [Acetobacter pasteurianus IFO 3283-01-42C] gi|256654274|dbj|BAI20201.1| NADH-ubiquinone oxidoreductase 20 kDa subunit [Acetobacter pasteurianus IFO 3283-12] Length = 165 Score = 130 bits (327), Expect = 9e-29, Method: Composition-based stats. Identities = 44/127 (34%), Positives = 69/127 (54%), Gaps = 6/127 (4%) Query: 56 MWM------TFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASA 109 + T G C +E+ YD+E GF SPR +DV+++ G LT MA Sbjct: 26 WPLLLFHVDTGGCGGCGMELQALRYAPYDMEGAGFGFVTSPRNADVLLITGALTRAMAPV 85 Query: 110 LRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYG 169 L + MP P+ +I++GSCA GG + +Y+V+ G +R V +D+ +PGCPP + ++ G Sbjct: 86 LEAAWQAMPTPKGLIAVGSCALDGGMFPENYTVLGGLERRVSIDLKIPGCPPAPQDVLNG 145 Query: 170 ILLLQKK 176 + L K Sbjct: 146 LCSLFGK 152 >gi|329114352|ref|ZP_08243114.1| Formate hydrogenlyase subunit 7 [Acetobacter pomorum DM001] gi|326696428|gb|EGE48107.1| Formate hydrogenlyase subunit 7 [Acetobacter pomorum DM001] Length = 165 Score = 130 bits (327), Expect = 9e-29, Method: Composition-based stats. Identities = 44/127 (34%), Positives = 69/127 (54%), Gaps = 6/127 (4%) Query: 56 MWM------TFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASA 109 + T G C +E+ YD+E GF SPR +DV+++ G LT MA Sbjct: 26 WPLLLFHVDTGGCGGCGMELQALRYAPYDMEGAGFGFVTSPRNADVLLITGALTRAMAPV 85 Query: 110 LRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYG 169 L + MP P+ +I++GSCA GG + +Y+V+ G +R V +D+ +PGCPP + ++ G Sbjct: 86 LEAAWQAMPTPKGLIAVGSCALDGGMFPENYTVLGGLERRVSIDLKIPGCPPAPQDVLNG 145 Query: 170 ILLLQKK 176 + L K Sbjct: 146 LCSLFGK 152 >gi|254496122|ref|ZP_05109021.1| NADH dehydrogenase I, truncated B subunit [Legionella drancourtii LLAP12] gi|254354663|gb|EET13299.1| NADH dehydrogenase I, truncated B subunit [Legionella drancourtii LLAP12] Length = 80 Score = 130 bits (327), Expect = 1e-28, Method: Composition-based stats. Identities = 65/79 (82%), Positives = 73/79 (92%) Query: 106 MASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEA 165 MA ALR+VYDQMPEPR+V+SMGSCANGGGYYHYSYSVVRGCDRIVPVD+YVPGCPPTAEA Sbjct: 1 MAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEA 60 Query: 166 LIYGILLLQKKIRRVGNVK 184 L+YGI+ LQ KIRR ++ Sbjct: 61 LLYGIIQLQNKIRRKNILE 79 >gi|221041900|dbj|BAH12627.1| unnamed protein product [Homo sapiens] Length = 148 Score = 130 bits (326), Expect = 1e-28, Method: Composition-based stats. Identities = 57/108 (52%), Positives = 70/108 (64%) Query: 6 VNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACC 65 V+Q + S + + + + ++V +D LV WAR SL MTFGLACC Sbjct: 30 VHQSVAIDGPSSTQPALPKARAVAPKPSSRGEYVVAKLDDLVNWARRSSLWPMTFGLACC 89 Query: 66 AVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRV 113 AVEMM + PRYD++RFG RASPRQSDVMIVAGTLTNKMA ALR+V Sbjct: 90 AVEMMHMAAPRYDMDRFGVVFRASPRQSDVMIVAGTLTNKMAPALRKV 137 >gi|124515569|gb|EAY57079.1| putative hydrogenase-3 (HycG) [Leptospirillum rubarum] gi|206601799|gb|EDZ38282.1| Putative NADH ubiquinone oxidoreductase, 20 kDa subunit [Leptospirillum sp. Group II '5-way CG'] Length = 169 Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats. Identities = 37/127 (29%), Positives = 64/127 (50%), Gaps = 1/127 (0%) Query: 50 ARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108 + S+ + G C +E+ + Y ER G ASPR +D+++V G ++ +M Sbjct: 33 GGSLSIRHVDAGSCNACELELHAMNGSYYAPERDGIRFVASPRHADLLLVTGPVSCQMEQ 92 Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168 L ++ M P+ V+++G CA GG + S +V G D + P VPGCPP+ ++ Sbjct: 93 PLLDTHEAMASPKTVLAVGDCACQGGVFRGSPAVRNGVDGLFPEARKVPGCPPSPSDILR 152 Query: 169 GILLLQK 175 + L + Sbjct: 153 ALRGLSR 159 >gi|115691401|ref|XP_794478.2| PREDICTED: similar to mitochondrial complex I subunit NDUFS7, partial [Strongylocentrotus purpuratus] Length = 81 Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats. Identities = 60/75 (80%), Positives = 65/75 (86%) Query: 53 GSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRR 112 SL MTFGLACCAVEMM + PRYD++RFG RASPRQSDVMIVAGTLTNKMA ALR+ Sbjct: 7 SSLWPMTFGLACCAVEMMHFAAPRYDMDRFGVVFRASPRQSDVMIVAGTLTNKMAPALRK 66 Query: 113 VYDQMPEPRYVISMG 127 VYDQMPEPR+VISMG Sbjct: 67 VYDQMPEPRWVISMG 81 >gi|296109474|ref|YP_003616423.1| hypothetical protein Metin_0794 [Methanocaldococcus infernus ME] gi|295434288|gb|ADG13459.1| hypothetical protein Metin_0794 [Methanocaldococcus infernus ME] Length = 154 Score = 129 bits (325), Expect = 2e-28, Method: Composition-based stats. Identities = 44/126 (34%), Positives = 73/126 (57%), Gaps = 8/126 (6%) Query: 55 LMWMTFGLACCAVE-MMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRV 113 ++ T G C +E + P YD E++ +PR++D++IV+G +T + +LR++ Sbjct: 21 MLVYTGGCNGCDIEAVNAVFSPYYDAEQYNVFLTFNPRETDILIVSGCVTKFVKESLRKI 80 Query: 114 YDQMPEPRYVISMGSCANGGGYYHY-------SYSVVRGCDRIVPVDIYVPGCPPTAEAL 166 Y+++PEP+ V+++GSCA GG Y S V + I+PVD+ VPGC P E + Sbjct: 81 YEKIPEPKAVVAIGSCALTGGVYKNIGGDLGTSDFVAGPVENIIPVDVKVPGCAPRPEDI 140 Query: 167 IYGILL 172 I GI+ Sbjct: 141 ISGIVK 146 >gi|304315372|ref|YP_003850519.1| energy-converting hydrogenase B, subunit M [Methanothermobacter marburgensis str. Marburg] gi|5734564|emb|CAB52790.1| hydrogenase small subunit [Methanothermobacter thermautotrophicus] gi|302588831|gb|ADL59206.1| energy-converting hydrogenase B, subunit M [Methanothermobacter marburgensis str. Marburg] Length = 148 Score = 129 bits (325), Expect = 2e-28, Method: Composition-based stats. Identities = 44/142 (30%), Positives = 75/142 (52%), Gaps = 10/142 (7%) Query: 46 LVTWARTGSLMWM---TFGLACCAVEM-MQASMPRYDLERFGFAPRASPRQSDVMIVAGT 101 L +++R ++ M T G C +E+ P+YD E++ +PR++DV+IV G Sbjct: 3 LKSFSRARAVHAMLVYTGGCNGCDIEIVNAVLSPKYDAEQYKIFLTWNPREADVLIVTGP 62 Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY------SYSVVRGCDRIVPVDIY 155 +T + L+ +Y+ +PEP+ VI+ G+CA GG Y S + D+++PVD Sbjct: 63 VTKQNEGPLKEIYNAIPEPKAVIAAGACALMGGVYKNIHGDIPSEEICGPVDKVIPVDAK 122 Query: 156 VPGCPPTAEALIYGILLLQKKI 177 VPGC E ++ G + K+ Sbjct: 123 VPGCAVRPEDVLAGAVAALPKL 144 >gi|15607224|ref|NP_214596.1| oxidoreductase [Mycobacterium tuberculosis H37Rv] gi|2808739|emb|CAA16263.1| PROBABLE OXIDOREDUCTASE [Mycobacterium tuberculosis H37Rv] Length = 159 Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats. Identities = 45/117 (38%), Positives = 64/117 (54%) Query: 60 FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119 C VE+ A P YD ERFG ASP+ +D ++V G +T+ MA LR+ + P Sbjct: 43 GSCNGCEVEISGAFGPVYDAERFGARLVASPQHADALLVTGVVTHNMAGPLRKTLEATPR 102 Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKK 176 PR VI+ G CA G + +Y VV +VPVD+ + GCPPT A++ + + K Sbjct: 103 PRVVIACGDCALNRGVFADAYGVVGAVGEVVPVDVEIAGCPPTPAAIMAALRSVTGK 159 >gi|296532565|ref|ZP_06895272.1| NADH-quinone oxidoreductase subunit B [Roseomonas cervicalis ATCC 49957] gi|296267104|gb|EFH13022.1| NADH-quinone oxidoreductase subunit B [Roseomonas cervicalis ATCC 49957] Length = 167 Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats. Identities = 44/115 (38%), Positives = 69/115 (60%), Gaps = 1/115 (0%) Query: 50 ARTGSLMWMT-FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108 R+ +++ + G CA+E+ +DLERFG ASPR +DV++V+G +T M Sbjct: 6 GRSLAILPVQAGGCQGCALEIAALRGVVHDLERFGLRFVASPRHADVLLVSGPMTRTMTE 65 Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTA 163 A +R + M EP +V+++G CA GGG + +Y+V G +PVD+ +PGCPP Sbjct: 66 AAQRAHACMAEPGWVVAVGDCALGGGVFAGAYAVEEGVGAALPVDLVIPGCPPGP 120 >gi|15839463|ref|NP_334500.1| NADH-ubiquinone oxidoreductase, 20 Kd subunit [Mycobacterium tuberculosis CDC1551] gi|31791260|ref|NP_853753.1| oxidoreductase [Mycobacterium bovis AF2122/97] gi|121635995|ref|YP_976218.1| putative oxidoreductase [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148659844|ref|YP_001281367.1| putative oxidoreductase [Mycobacterium tuberculosis H37Ra] gi|148821274|ref|YP_001286028.1| oxidoreductase [Mycobacterium tuberculosis F11] gi|167970613|ref|ZP_02552890.1| hypothetical oxidoreductase [Mycobacterium tuberculosis H37Ra] gi|215406072|ref|ZP_03418253.1| oxidoreductase [Mycobacterium tuberculosis 02_1987] gi|215425279|ref|ZP_03423198.1| oxidoreductase [Mycobacterium tuberculosis T92] gi|215432997|ref|ZP_03430916.1| oxidoreductase [Mycobacterium tuberculosis EAS054] gi|215448360|ref|ZP_03435112.1| oxidoreductase [Mycobacterium tuberculosis T85] gi|218755809|ref|ZP_03534605.1| oxidoreductase [Mycobacterium tuberculosis GM 1503] gi|219555867|ref|ZP_03534943.1| oxidoreductase [Mycobacterium tuberculosis T17] gi|224988468|ref|YP_002643155.1| putative oxidoreductase [Mycobacterium bovis BCG str. Tokyo 172] gi|253797000|ref|YP_003030001.1| oxidoreductase [Mycobacterium tuberculosis KZN 1435] gi|254233481|ref|ZP_04926807.1| hypothetical protein TBCG_00083 [Mycobacterium tuberculosis C] gi|254366540|ref|ZP_04982584.1| hypothetical oxidoreductase [Mycobacterium tuberculosis str. Haarlem] gi|254549015|ref|ZP_05139462.1| oxidoreductase [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260184939|ref|ZP_05762413.1| oxidoreductase [Mycobacterium tuberculosis CPHL_A] gi|260199078|ref|ZP_05766569.1| oxidoreductase [Mycobacterium tuberculosis T46] gi|260203226|ref|ZP_05770717.1| oxidoreductase [Mycobacterium tuberculosis K85] gi|289441451|ref|ZP_06431195.1| oxidoreductase [Mycobacterium tuberculosis T46] gi|289445612|ref|ZP_06435356.1| oxidoreductase [Mycobacterium tuberculosis CPHL_A] gi|289552333|ref|ZP_06441543.1| oxidoreductase [Mycobacterium tuberculosis KZN 605] gi|289567972|ref|ZP_06448199.1| oxidoreductase [Mycobacterium tuberculosis T17] gi|289572662|ref|ZP_06452889.1| oxidoreductase [Mycobacterium tuberculosis K85] gi|289747849|ref|ZP_06507227.1| oxidoreductase [Mycobacterium tuberculosis 02_1987] gi|289748549|ref|ZP_06507927.1| oxidoreductase [Mycobacterium tuberculosis T92] gi|289756143|ref|ZP_06515521.1| oxidoreductase [Mycobacterium tuberculosis EAS054] gi|289760181|ref|ZP_06519559.1| NADH-ubiquinone oxidoreductase [Mycobacterium tuberculosis T85] gi|289764198|ref|ZP_06523576.1| NADH-ubiquinone oxidoreductase [Mycobacterium tuberculosis GM 1503] gi|294995700|ref|ZP_06801391.1| oxidoreductase [Mycobacterium tuberculosis 210] gi|297632555|ref|ZP_06950335.1| oxidoreductase [Mycobacterium tuberculosis KZN 4207] gi|297729528|ref|ZP_06958646.1| oxidoreductase [Mycobacterium tuberculosis KZN R506] gi|306778376|ref|ZP_07416713.1| oxidoreductase [Mycobacterium tuberculosis SUMu001] gi|306778908|ref|ZP_07417245.1| oxidoreductase [Mycobacterium tuberculosis SUMu002] gi|306782697|ref|ZP_07421019.1| oxidoreductase [Mycobacterium tuberculosis SUMu003] gi|306787063|ref|ZP_07425385.1| oxidoreductase [Mycobacterium tuberculosis SUMu004] gi|306791621|ref|ZP_07429923.1| oxidoreductase [Mycobacterium tuberculosis SUMu005] gi|306795684|ref|ZP_07433986.1| oxidoreductase [Mycobacterium tuberculosis SUMu006] gi|306801659|ref|ZP_07438327.1| oxidoreductase [Mycobacterium tuberculosis SUMu008] gi|306970266|ref|ZP_07482927.1| oxidoreductase [Mycobacterium tuberculosis SUMu009] gi|306974499|ref|ZP_07487160.1| oxidoreductase [Mycobacterium tuberculosis SUMu010] gi|307082207|ref|ZP_07491377.1| oxidoreductase [Mycobacterium tuberculosis SUMu011] gi|307082548|ref|ZP_07491661.1| oxidoreductase [Mycobacterium tuberculosis SUMu012] gi|313656856|ref|ZP_07813736.1| oxidoreductase [Mycobacterium tuberculosis KZN V2475] gi|13879137|gb|AAK44314.1| NADH-ubiquinone oxidoreductase, 20 Kd subunit [Mycobacterium tuberculosis CDC1551] gi|31616845|emb|CAD92947.1| PROBABLE OXIDOREDUCTASE [Mycobacterium bovis AF2122/97] gi|121491642|emb|CAL70100.1| Probable oxidoreductase [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|124603274|gb|EAY61549.1| hypothetical protein TBCG_00083 [Mycobacterium tuberculosis C] gi|134152052|gb|EBA44097.1| hypothetical oxidoreductase [Mycobacterium tuberculosis str. Haarlem] gi|148503996|gb|ABQ71805.1| putative oxidoreductase [Mycobacterium tuberculosis H37Ra] gi|148719801|gb|ABR04426.1| hypothetical oxidoreductase [Mycobacterium tuberculosis F11] gi|224771581|dbj|BAH24387.1| putative oxidoreductase [Mycobacterium bovis BCG str. Tokyo 172] gi|253318503|gb|ACT23106.1| oxidoreductase [Mycobacterium tuberculosis KZN 1435] gi|289414370|gb|EFD11610.1| oxidoreductase [Mycobacterium tuberculosis T46] gi|289418570|gb|EFD15771.1| oxidoreductase [Mycobacterium tuberculosis CPHL_A] gi|289436965|gb|EFD19458.1| oxidoreductase [Mycobacterium tuberculosis KZN 605] gi|289537093|gb|EFD41671.1| oxidoreductase [Mycobacterium tuberculosis K85] gi|289541725|gb|EFD45374.1| oxidoreductase [Mycobacterium tuberculosis T17] gi|289688377|gb|EFD55865.1| oxidoreductase [Mycobacterium tuberculosis 02_1987] gi|289689136|gb|EFD56565.1| oxidoreductase [Mycobacterium tuberculosis T92] gi|289696730|gb|EFD64159.1| oxidoreductase [Mycobacterium tuberculosis EAS054] gi|289711704|gb|EFD75720.1| NADH-ubiquinone oxidoreductase [Mycobacterium tuberculosis GM 1503] gi|289715745|gb|EFD79757.1| NADH-ubiquinone oxidoreductase [Mycobacterium tuberculosis T85] gi|308213367|gb|EFO72766.1| oxidoreductase [Mycobacterium tuberculosis SUMu001] gi|308328111|gb|EFP16962.1| oxidoreductase [Mycobacterium tuberculosis SUMu002] gi|308332461|gb|EFP21312.1| oxidoreductase [Mycobacterium tuberculosis SUMu003] gi|308336250|gb|EFP25101.1| oxidoreductase [Mycobacterium tuberculosis SUMu004] gi|308339839|gb|EFP28690.1| oxidoreductase [Mycobacterium tuberculosis SUMu005] gi|308343833|gb|EFP32684.1| oxidoreductase [Mycobacterium tuberculosis SUMu006] gi|308351559|gb|EFP40410.1| oxidoreductase [Mycobacterium tuberculosis SUMu008] gi|308352244|gb|EFP41095.1| oxidoreductase [Mycobacterium tuberculosis SUMu009] gi|308356201|gb|EFP45052.1| oxidoreductase [Mycobacterium tuberculosis SUMu010] gi|308360154|gb|EFP49005.1| oxidoreductase [Mycobacterium tuberculosis SUMu011] gi|308367717|gb|EFP56568.1| oxidoreductase [Mycobacterium tuberculosis SUMu012] gi|323717424|gb|EGB26629.1| oxidoreductase [Mycobacterium tuberculosis CDC1551A] gi|326905842|gb|EGE52775.1| oxidoreductase [Mycobacterium tuberculosis W-148] gi|328456789|gb|AEB02212.1| oxidoreductase [Mycobacterium tuberculosis KZN 4207] Length = 159 Score = 128 bits (321), Expect = 4e-28, Method: Composition-based stats. Identities = 46/117 (39%), Positives = 64/117 (54%) Query: 60 FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119 C VE+ A P YD ERFG ASPR +D ++V G +T+ MA LR+ + P Sbjct: 43 GSCNGCEVEISGAFGPVYDAERFGARLVASPRHADALLVTGVVTHNMAGPLRKTLEATPR 102 Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKK 176 PR VI+ G CA G + +Y VV +VPVD+ + GCPPT A++ + + K Sbjct: 103 PRVVIACGDCALNRGVFADAYGVVGAVGEVVPVDVEIAGCPPTPAAIMAALRSVTGK 159 >gi|222632346|gb|EEE64478.1| hypothetical protein OsJ_19328 [Oryza sativa Japonica Group] Length = 976 Score = 128 bits (321), Expect = 5e-28, Method: Composition-based stats. Identities = 64/76 (84%), Positives = 69/76 (90%) Query: 106 MASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEA 165 AS+ +VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEA Sbjct: 893 WASSASQVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEA 952 Query: 166 LIYGILLLQKKIRRVG 181 L+YG+L LQKKI R Sbjct: 953 LLYGVLQLQKKINRRR 968 >gi|195953675|ref|YP_002121965.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Hydrogenobaculum sp. Y04AAS1] gi|195933287|gb|ACG57987.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Hydrogenobaculum sp. Y04AAS1] Length = 165 Score = 127 bits (319), Expect = 7e-28, Method: Composition-based stats. Identities = 39/120 (32%), Positives = 58/120 (48%), Gaps = 2/120 (1%) Query: 55 LMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRV 113 + + G C E+ S YD+ERFG ASP+ DV+ + G +T M L Sbjct: 42 IRHVDCGSCNACEYELTALSNVFYDIERFGIKFVASPKHVDVLTITGPITRNMYKPLLDA 101 Query: 114 YDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI-VPVDIYVPGCPPTAEALIYGILL 172 P P+ +I++G C+ GG + +Y +V G I + I + GCPP +I GIL Sbjct: 102 IQNTPNPKVIIAIGDCSIDGGLFKGAYGIVGGLKDINIEPHILIRGCPPHPRDIISGILK 161 >gi|331694628|ref|YP_004330867.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Pseudonocardia dioxanivorans CB1190] gi|326949317|gb|AEA23014.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Pseudonocardia dioxanivorans CB1190] Length = 161 Score = 127 bits (319), Expect = 8e-28, Method: Composition-based stats. Identities = 43/113 (38%), Positives = 63/113 (55%) Query: 60 FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119 C +E+ A P YD ER+G ASPR +D ++V G +T M LRR Y+ + E Sbjct: 45 GSCNGCELEIGAAFGPVYDAERYGARLVASPRHADALVVTGAVTRNMVEPLRRTYEAVGE 104 Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILL 172 P+ V+++G CA G + +Y VV +VPVD+ V GCPP E ++ + L Sbjct: 105 PKVVVAVGDCARNCGVFAEAYGVVGAVADVVPVDLEVVGCPPRPETIVAALRL 157 >gi|325958030|ref|YP_004289496.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanobacterium sp. AL-21] gi|325329462|gb|ADZ08524.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanobacterium sp. AL-21] Length = 148 Score = 127 bits (319), Expect = 8e-28, Method: Composition-based stats. Identities = 45/136 (33%), Positives = 74/136 (54%), Gaps = 10/136 (7%) Query: 46 LVTWARTGSLMWM---TFGLACCAVEMMQA-SMPRYDLERFGFAPRASPRQSDVMIVAGT 101 L +++R ++ M T G C +E++ P+YD E++ +PR++DV++V G Sbjct: 3 LKSYSRARAVHVMLVYTGGCNGCDIEIVNCVLSPKYDAEQYKVFLTWNPREADVLVVTGP 62 Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY------SYSVVRGCDRIVPVDIY 155 +T LR +YD +PEP+ VI+ G+CA GG Y S ++ D I+PVD Sbjct: 63 VTRHNEKPLREIYDAIPEPKAVIAAGACALMGGVYKNIHGDIPSEEIMGPVDNIIPVDAK 122 Query: 156 VPGCPPTAEALIYGIL 171 VPGC E ++ G++ Sbjct: 123 VPGCAVRPEDVLSGVV 138 >gi|88603352|ref|YP_503530.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Methanospirillum hungatei JF-1] gi|88188814|gb|ABD41811.1| membrane-bound hydrogenase subunit ehaN [Methanospirillum hungatei JF-1] Length = 150 Score = 126 bits (318), Expect = 9e-28, Method: Composition-based stats. Identities = 43/149 (28%), Positives = 78/149 (52%), Gaps = 4/149 (2%) Query: 40 VTSVDQLVTWARTGSLMWM---TFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVM 96 +T++ L R S+ T C +E++ PRYDLE++G +PR++DV+ Sbjct: 1 MTTLQSLKNAVRQRSIHVCYVDTGSCNGCDIEVLACLSPRYDLEQYGIYVHNNPREADVL 60 Query: 97 IVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR-IVPVDIY 155 ++ G +T + LR V+D++PEP+ +S+G+C G + ++ R + +P+ Sbjct: 61 LIIGGVTPQWEDKLRMVWDKIPEPKVAVSIGNCPISGCVFSRPQTLTRAPAKSYIPIAAE 120 Query: 156 VPGCPPTAEALIYGILLLQKKIRRVGNVK 184 VPGCPP +I IL + I + ++ Sbjct: 121 VPGCPPRPTEIIQAILSVAPLIFKDWELR 149 >gi|182414283|ref|YP_001819349.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Opitutus terrae PB90-1] gi|177841497|gb|ACB75749.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Opitutus terrae PB90-1] Length = 285 Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats. Identities = 41/119 (34%), Positives = 64/119 (53%), Gaps = 1/119 (0%) Query: 49 WARTGSLMWMT-FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMA 107 + R+ L ++ G ++ +DL RFG ASPR +D ++V G ++ M Sbjct: 150 FGRSLRLRQVSAGGSGAEEADLNVLGTIGWDLGRFGIQFVASPRHADGLVVTGPVSKGME 209 Query: 108 SALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL 166 ALR+ ++ MP P+ VI++G+ A GG + V G D IVPVD+Y+PG PP + Sbjct: 210 LALRKTWEAMPAPKIVIAVGAEAISGGVFAGHPQVRNGVDAIVPVDLYIPGWPPHPLTI 268 >gi|240102115|ref|YP_002958423.1| formate hydrogenlyase II subunit H (Mhy2H) [Thermococcus gammatolerans EJ3] gi|239909668|gb|ACS32559.1| formate hydrogenlyase II subunit H (Mhy2H) [Thermococcus gammatolerans EJ3] Length = 283 Score = 126 bits (316), Expect = 2e-27, Method: Composition-based stats. Identities = 43/160 (26%), Positives = 66/160 (41%), Gaps = 31/160 (19%) Query: 51 RTGSLMWMT---FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMA 107 R SL C +E+ P YD ER G ASPR + M G LT + Sbjct: 2 RLRSLYVFHLDTGACNGCEIELFDILTPYYDAERLGVRLAASPRHAHAMAATGPLTRQAY 61 Query: 108 SALRRVYDQM-PEPRYVISMGSCANGGGYYHYSYSVVRGCDR------------------ 148 A + M P+PR ++++G+CA GG ++ Y + R + Sbjct: 62 YAAKEAIKAMPPKPRIIVAIGTCACSGGIFYNGYPIYRRPESGREGQEYPRRGGIFELVQ 121 Query: 149 --------IVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180 + PV +Y+PGCPP E ++YG+ L + + Sbjct: 122 DLRDEGEYVGPV-VYIPGCPPRPEEILYGVALALGLVEKQ 160 >gi|215413939|ref|ZP_03422601.1| oxidoreductase [Mycobacterium tuberculosis 94_M4241A] gi|298527474|ref|ZP_07014883.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A] gi|298497268|gb|EFI32562.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A] Length = 159 Score = 126 bits (316), Expect = 2e-27, Method: Composition-based stats. Identities = 45/117 (38%), Positives = 63/117 (53%) Query: 60 FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119 C VE+ A P YD RFG ASPR +D ++V G +T+ MA LR+ + P Sbjct: 43 GSCNGCEVEISGAFGPVYDAGRFGARLVASPRHADALLVTGVVTHNMAGPLRKTLEATPR 102 Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKK 176 PR VI+ G CA G + +Y VV +VPVD+ + GCPPT A++ + + K Sbjct: 103 PRVVIACGDCALNRGVFADAYGVVGAVGEVVPVDVEIAGCPPTPAAIMAALRSVTGK 159 >gi|197116467|ref|YP_002136894.1| iron-sulfur cluster-binding domain-containing hydrogenase subunit [Geobacter bemidjiensis Bem] gi|197085827|gb|ACH37098.1| hydrogenase subunit, iron-sulfur cluster-binding domain-containing protein [Geobacter bemidjiensis Bem] Length = 332 Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats. Identities = 38/121 (31%), Positives = 66/121 (54%), Gaps = 1/121 (0%) Query: 56 MWMTFGLACCAVEM-MQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVY 114 T C VE+ + A++ +D+E+ G P ++D++++ G LT + + R+Y Sbjct: 17 RINTGSCNGCDVELAVTAAVDEFDVEQLGCRYTEEPHEADILLITGPLTVRARNEALRLY 76 Query: 115 DQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQ 174 + PE + +++G C GG + SY+V R +PVD+ VPGCPP +AL+ GI + Sbjct: 77 AEAPETKVTVAVGVCPVSGGVFRDSYAVDGPVQRYLPVDLNVPGCPPRPQALLAGIAQAR 136 Query: 175 K 175 Sbjct: 137 D 137 >gi|34536232|dbj|BAC87587.1| unnamed protein product [Homo sapiens] Length = 155 Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats. Identities = 61/111 (54%), Positives = 72/111 (64%), Gaps = 3/111 (2%) Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62 LT + + +L K A + SS ++V +D LV WAR SL MTFGL Sbjct: 37 LTPPVPVCLCASTQPALPKARAVAPKPSS---RGEYVVAKLDDLVNWARRSSLWPMTFGL 93 Query: 63 ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRV 113 ACCAVEMM + PRYD++RFG RASPRQSDVMIVAGTLTNKMA ALR+V Sbjct: 94 ACCAVEMMHMAAPRYDMDRFGVVFRASPRQSDVMIVAGTLTNKMAPALRKV 144 >gi|162149080|ref|YP_001603541.1| NADH-quinone oxidoreductase subunit B [Gluconacetobacter diazotrophicus PAl 5] gi|161787657|emb|CAP57253.1| putative NADH-quinone oxidoreductase chain B [Gluconacetobacter diazotrophicus PAl 5] Length = 166 Score = 125 bits (313), Expect = 4e-27, Method: Composition-based stats. Identities = 44/128 (34%), Positives = 74/128 (57%), Gaps = 1/128 (0%) Query: 50 ARTGSLMWM-TFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108 AR ++ + T G CA+E+ Y L G A A+PR ++V++V G LT MA Sbjct: 22 ARPLAVFHVETGGCEGCAMEVAALDGAAYGLPATGIAFVATPRLAEVLLVTGPLTRAMAP 81 Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168 L + MPEPR ++++G+CA GG + +Y+V+ G + +D+ VPGCPP+ A++ Sbjct: 82 VLEAAWHAMPEPRALVAVGACAIDGGPFPENYAVLGGLEGRATLDVTVPGCPPSPAAILA 141 Query: 169 GILLLQKK 176 G+ + ++ Sbjct: 142 GLARVLER 149 >gi|124485396|ref|YP_001030012.1| hypothetical protein Mlab_0571 [Methanocorpusculum labreanum Z] gi|124362937|gb|ABN06745.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Methanocorpusculum labreanum Z] Length = 159 Score = 125 bits (313), Expect = 4e-27, Method: Composition-based stats. Identities = 37/136 (27%), Positives = 72/136 (52%), Gaps = 4/136 (2%) Query: 40 VTSVDQLVTWARTGSLMWM---TFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVM 96 ++ + Q R S+ T C +E++ P+YD+E++G +PR++DV+ Sbjct: 1 MSILQQFKNAVRQRSIHVCYVNTGSCNGCDIEILACLAPKYDIEQYGIYVHNNPREADVI 60 Query: 97 IVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR-GCDRIVPVDIY 155 +V G ++ + L ++D++PEP+ V+++G+C G ++ ++ + +PV Sbjct: 61 LVTGGMSPQWLDKLPDLWDRVPEPKAVVTIGNCPISGCVFNRPGKLIDPPVSKYIPVTAA 120 Query: 156 VPGCPPTAEALIYGIL 171 VPGCPP +I IL Sbjct: 121 VPGCPPRPSEIISAIL 136 >gi|291515582|emb|CBK64792.1| Ni,Fe-hydrogenase III small subunit [Alistipes shahii WAL 8301] Length = 254 Score = 125 bits (313), Expect = 4e-27, Method: Composition-based stats. Identities = 42/133 (31%), Positives = 67/133 (50%), Gaps = 1/133 (0%) Query: 49 WARTGSLMWMT-FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMA 107 ++R L ++ G A +E+ +DL RFG ASPR +D ++V+G +T MA Sbjct: 122 FSRALQLREVSAGGDASVEMELGATGNVNFDLGRFGIGFTASPRHADGVVVSGPVTVNMA 181 Query: 108 SALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALI 167 AL YD + EP+ +++ GS A GG + S +V R D+++PG P I Sbjct: 182 EALEICYDAVAEPKILVACGSEACSGGLFADSRAVDRTFFDTHTPDLWLPGAPTHPMTYI 241 Query: 168 YGILLLQKKIRRV 180 G++ L + R Sbjct: 242 DGMMNLLGRKTRQ 254 >gi|227830172|ref|YP_002831952.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Sulfolobus islandicus L.S.2.15] gi|227456620|gb|ACP35307.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Sulfolobus islandicus L.S.2.15] Length = 201 Score = 124 bits (311), Expect = 6e-27, Method: Composition-based stats. Identities = 40/131 (30%), Positives = 67/131 (51%), Gaps = 13/131 (9%) Query: 49 WARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMA 107 + R+ L + G C +E+ S P YD+ RF +PR +D ++V G +T KM Sbjct: 81 FKRSFYLYPIDSGTCGGCNMELKLISSPEYDMTRFSIFFTNTPRHADALVVMGVMTEKMK 140 Query: 108 SALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD--IYVPGCPPTAEA 165 L++ Y+ MPEP+ VI +G+CA GG VP++ + +PGCPP Sbjct: 141 EVLKKAYEAMPEPKVVILLGACAISGGIIGEG----------VPLEAVVEIPGCPPNPFT 190 Query: 166 LIYGILLLQKK 176 ++ ++ ++ K Sbjct: 191 ILEALMKVKGK 201 >gi|15897890|ref|NP_342495.1| formate hydrogenlyase subunit 7 (hycG) [Sulfolobus solfataricus P2] gi|227827480|ref|YP_002829260.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Sulfolobus islandicus M.14.25] gi|229578987|ref|YP_002837385.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Sulfolobus islandicus Y.G.57.14] gi|229582260|ref|YP_002840659.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Sulfolobus islandicus Y.N.15.51] gi|229584694|ref|YP_002843196.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Sulfolobus islandicus M.16.27] gi|284173589|ref|ZP_06387558.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Sulfolobus solfataricus 98/2] gi|13814203|gb|AAK41285.1| Formate hydrogenlyase subunit 7 (hycG) [Sulfolobus solfataricus P2] gi|227459276|gb|ACP37962.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Sulfolobus islandicus M.14.25] gi|228009701|gb|ACP45463.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Sulfolobus islandicus Y.G.57.14] gi|228012976|gb|ACP48737.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Sulfolobus islandicus Y.N.15.51] gi|228019744|gb|ACP55151.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Sulfolobus islandicus M.16.27] gi|261602599|gb|ACX92202.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Sulfolobus solfataricus 98/2] Length = 201 Score = 124 bits (311), Expect = 6e-27, Method: Composition-based stats. Identities = 40/131 (30%), Positives = 67/131 (51%), Gaps = 13/131 (9%) Query: 49 WARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMA 107 + R+ L + G C +E+ S P YD+ RF +PR +D ++V G +T KM Sbjct: 81 FKRSFYLYPIDSGTCGGCNMELKLISSPEYDMTRFSIFFTNTPRHADALVVMGVMTEKMK 140 Query: 108 SALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD--IYVPGCPPTAEA 165 L++ Y+ MPEP+ VI +G+CA GG VP++ + +PGCPP Sbjct: 141 EVLKKAYEAMPEPKVVILLGACAISGGIIGEG----------VPLEAVVEIPGCPPNPFT 190 Query: 166 LIYGILLLQKK 176 ++ ++ ++ K Sbjct: 191 ILEALMKVKGK 201 >gi|313157372|gb|EFR56795.1| NADH ubiquinone oxidoreductase, 20 Kd subunit [Alistipes sp. HGB5] Length = 254 Score = 124 bits (311), Expect = 7e-27, Method: Composition-based stats. Identities = 43/133 (32%), Positives = 64/133 (48%), Gaps = 1/133 (0%) Query: 49 WARTGSLM-WMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMA 107 + R+ L G A +E+ +DL R+G ASPR +D ++V+G +T MA Sbjct: 122 FGRSLQLREVCAGGDASVEMELNATGNVNFDLGRYGIGFTASPRHADGVVVSGPITVNMA 181 Query: 108 SALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALI 167 ALR D + P+ ++ GS A GG + S +V R D+++PG P I Sbjct: 182 EALRICCDAVANPKILVVCGSEACSGGLFAGSRAVDRTFFDTHAADLWLPGAPTHPMTFI 241 Query: 168 YGILLLQKKIRRV 180 GIL L K +R Sbjct: 242 DGILNLLGKKKRE 254 >gi|148643124|ref|YP_001273637.1| energy-converting hydrogenase B, subunit M, EhbM [Methanobrevibacter smithii ATCC 35061] gi|222445361|ref|ZP_03607876.1| hypothetical protein METSMIALI_00989 [Methanobrevibacter smithii DSM 2375] gi|261350078|ref|ZP_05975495.1| putative hydrogenase, group 4, EchC subunit [Methanobrevibacter smithii DSM 2374] gi|148552141|gb|ABQ87269.1| energy-converting hydrogenase B, subunit M, EhbM [Methanobrevibacter smithii ATCC 35061] gi|222434926|gb|EEE42091.1| hypothetical protein METSMIALI_00989 [Methanobrevibacter smithii DSM 2375] gi|288860864|gb|EFC93162.1| putative hydrogenase, group 4, EchC subunit [Methanobrevibacter smithii DSM 2374] Length = 148 Score = 123 bits (310), Expect = 7e-27, Method: Composition-based stats. Identities = 41/142 (28%), Positives = 73/142 (51%), Gaps = 10/142 (7%) Query: 46 LVTWARTGSLMWM---TFGLACCAVEM-MQASMPRYDLERFGFAPRASPRQSDVMIVAGT 101 + +++R ++ M T G C +E+ PR+D E++ +PR++DV++V G Sbjct: 3 IKSFSRARAIHLMLVYTGGCNGCDIEIVNSVLSPRFDAEQYKVFLTWNPREADVLVVTGP 62 Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY------SYSVVRGCDRIVPVDIY 155 +T L +Y +PEP+ V++ GSCA GG Y S + + I+PVD Sbjct: 63 VTKLNRKPLEEIYKAIPEPKLVVAAGSCALMGGVYKNIHGDIPSEEIEGPVENIIPVDAK 122 Query: 156 VPGCPPTAEALIYGILLLQKKI 177 VPGC + ++ G++ + K+ Sbjct: 123 VPGCAVRPQDVLSGVVSILPKL 144 >gi|330834667|ref|YP_004409395.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Metallosphaera cuprina Ar-4] gi|329566806|gb|AEB94911.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Metallosphaera cuprina Ar-4] Length = 203 Score = 123 bits (310), Expect = 8e-27, Method: Composition-based stats. Identities = 45/132 (34%), Positives = 71/132 (53%), Gaps = 9/132 (6%) Query: 48 TWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKM 106 T+ R+ + + G C +E S P+YD+ RFG +P+ +D +IV G L+ KM Sbjct: 80 TFKRSFFVYPIDTGSCGGCNLEFRLISAPQYDMTRFGIFFVNTPKHADALIVMGNLSEKM 139 Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL 166 + LR+ YD MPEP+ VI +G+CA GG V G + ++ VPGCPPT ++ Sbjct: 140 SKVLRKAYDVMPEPKLVILIGTCAISGG--------VTGIPPDIKGNVIVPGCPPTPSSI 191 Query: 167 IYGILLLQKKIR 178 + ++ + R Sbjct: 192 LDALIAAKGDKR 203 >gi|149193854|ref|ZP_01870952.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Caminibacter mediatlanticus TB-2] gi|149135807|gb|EDM24285.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Caminibacter mediatlanticus TB-2] Length = 140 Score = 123 bits (310), Expect = 8e-27, Method: Composition-based stats. Identities = 36/128 (28%), Positives = 63/128 (49%), Gaps = 1/128 (0%) Query: 56 MWMTFGLACCAVEMMQASMP-RYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVY 114 T C VE+ + M R+DL++ G + +D+ ++ G +T + L+ V Sbjct: 11 RINTGSCNGCDVEIAASVMSSRFDLQKLGCEYIETSEDADIFMITGPVTARSLPFLKEVI 70 Query: 115 DQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQ 174 +P VIS+G+C+ G + SY ++ D V VD+ V GCPP +A++ G+ Sbjct: 71 KNHKKPYVVISLGTCSVTCGIFRDSYPILGPVDSYVNVDVNVAGCPPRPQAILEGVKTAI 130 Query: 175 KKIRRVGN 182 ++R N Sbjct: 131 DILKRKNN 138 >gi|255021729|ref|ZP_05293769.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Acidithiobacillus caldus ATCC 51756] gi|254968869|gb|EET26391.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Acidithiobacillus caldus ATCC 51756] Length = 264 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 38/114 (33%), Positives = 60/114 (52%), Gaps = 1/114 (0%) Query: 51 RTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASA 109 R+ + + G C E+ P Y+L R G SPR +D+++V G +T M Sbjct: 125 RSLHIRHVDAGSCNGCESEIGALDNPFYNLHRLGIFFTPSPRFADLLMVTGPVTAPMHGP 184 Query: 110 LRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTA 163 L ++ MPEPR V++ G+CA G Y+ G + ++PVD+++PGCPP Sbjct: 185 LLATWEAMPEPRMVLATGTCAVSGAPMDGGYAGGSGLNALLPVDVWLPGCPPNP 238 >gi|209545176|ref|YP_002277405.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Gluconacetobacter diazotrophicus PAl 5] gi|209532853|gb|ACI52790.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Gluconacetobacter diazotrophicus PAl 5] Length = 166 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 44/128 (34%), Positives = 74/128 (57%), Gaps = 1/128 (0%) Query: 50 ARTGSLMWM-TFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108 AR ++ + T G CA+E+ Y L G A A+PR ++V++V G LT MA Sbjct: 22 ARPLAVFHVETGGCEGCAMEVAALDGAAYGLPATGIAFVATPRLAEVLLVTGPLTRAMAP 81 Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168 L + MPEPR ++++G+CA GG + +Y+V+ G + +D+ VPGCPP+ A++ Sbjct: 82 VLEAAWHAMPEPRALVAVGACAIDGGPFPENYAVLGGLEGRATLDMTVPGCPPSPAAILA 141 Query: 169 GILLLQKK 176 G+ + ++ Sbjct: 142 GLARVLER 149 >gi|288561258|ref|YP_003424744.1| energy-converting hydrogenase B subunit M EhbM [Methanobrevibacter ruminantium M1] gi|288543968|gb|ADC47852.1| energy-converting hydrogenase B subunit M EhbM [Methanobrevibacter ruminantium M1] Length = 148 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 38/136 (27%), Positives = 72/136 (52%), Gaps = 10/136 (7%) Query: 46 LVTWARTGSLMWM---TFGLACCAVEM-MQASMPRYDLERFGFAPRASPRQSDVMIVAGT 101 L T +R+ ++ M T G C +E+ P++D+E++G +PR++D+++V G Sbjct: 3 LKTLSRSKAIHIMLVYTGGCNGCDIEIVNAVLSPKFDMEQYGVFLTWNPREADILVVTGP 62 Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYS------VVRGCDRIVPVDIY 155 +T L +Y+ +P P+ V++ GSCA GG Y + + + ++PVD Sbjct: 63 VTYDNRKPLEDIYNAIPNPKLVVAAGSCALMGGVYKNCHGDIPSEEIEGPVENVIPVDAK 122 Query: 156 VPGCPPTAEALIYGIL 171 VPGC + ++ G++ Sbjct: 123 VPGCAVRPQDVLAGVV 138 >gi|119188401|ref|XP_001244807.1| hypothetical protein CIMG_04248 [Coccidioides immitis RS] Length = 84 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 63/79 (79%), Positives = 70/79 (88%) Query: 106 MASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEA 165 MA ALR+VYDQMP+PR+VISMGSCANGGGYYHYSYSV RGCDRIVPVDIYVPGCPPT+EA Sbjct: 1 MAPALRQVYDQMPDPRWVISMGSCANGGGYYHYSYSVTRGCDRIVPVDIYVPGCPPTSEA 60 Query: 166 LIYGILLLQKKIRRVGNVK 184 L+YGI LQKK+R + Sbjct: 61 LMYGIFQLQKKMRHTQITR 79 >gi|296116642|ref|ZP_06835252.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Gluconacetobacter hansenii ATCC 23769] gi|295976854|gb|EFG83622.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Gluconacetobacter hansenii ATCC 23769] Length = 148 Score = 123 bits (308), Expect = 2e-26, Method: Composition-based stats. Identities = 39/112 (34%), Positives = 63/112 (56%) Query: 59 TFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMP 118 T G A CA+E+ +P D G SPR +D+++VAG +T M L + + MP Sbjct: 19 TGGCAGCAMELAALDVPADDAGCKGICFVRSPRHADILLVAGPVTRAMVPVLEQAWQAMP 78 Query: 119 EPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGI 170 PR ++++G CA GG + +Y+V+ G V +D+ +PGCPP+ + + I Sbjct: 79 GPRALMAIGDCAIDGGMFGENYAVLGGLRGRVHLDLSLPGCPPSPDMIQSAI 130 >gi|126179131|ref|YP_001047096.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Methanoculleus marisnigri JR1] gi|125861925|gb|ABN57114.1| membrane-bound hydrogenase subunit ehaN [Methanoculleus marisnigri JR1] Length = 151 Score = 123 bits (308), Expect = 2e-26, Method: Composition-based stats. Identities = 37/144 (25%), Positives = 77/144 (53%), Gaps = 4/144 (2%) Query: 40 VTSVDQLVTWARTGSLMWM---TFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVM 96 ++ + ++ R+ S+ C +E++ PRYD+E++G +PR++DV+ Sbjct: 1 MSILQKIKNTVRSRSIHVSYVDVGSCNGCDIEVLACLAPRYDIEQYGIYVHNNPREADVL 60 Query: 97 IVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR-GCDRIVPVDIY 155 +V G++T + LR ++D++PEP+ +++G+C G Y ++ ++ +P+ Sbjct: 61 LVIGSVTPQWVDKLRDIWDKIPEPKVAVAIGNCPISGCVYARRGTLTSPPVEKYIPIAAQ 120 Query: 156 VPGCPPTAEALIYGILLLQKKIRR 179 VPGCPP ++ IL + I + Sbjct: 121 VPGCPPRPTEILNAILSVAPLIFK 144 >gi|84490226|ref|YP_448458.1| EhbM [Methanosphaera stadtmanae DSM 3091] gi|84373545|gb|ABC57815.1| EhbM [Methanosphaera stadtmanae DSM 3091] Length = 150 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 39/136 (28%), Positives = 75/136 (55%), Gaps = 10/136 (7%) Query: 46 LVTWARTGSLMWM---TFGLACCAVEMMQA-SMPRYDLERFGFAPRASPRQSDVMIVAGT 101 L + AR ++ M T G C +E++ P++D+E++ +PR++DV++V+G Sbjct: 3 LKSQARKKAIHLMLVYTGGCNGCDIEIVNTVLSPKFDIEQYNVYLTWNPREADVLVVSGP 62 Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY------SYSVVRGCDRIVPVDIY 155 +T L ++Y+ +P+P+ V+++G+CA GG Y S + D ++PVD Sbjct: 63 VTYWTKEPLLKIYEAIPKPKLVVAVGACALTGGVYKNIHGEIPSEEIEGPVDNVIPVDAK 122 Query: 156 VPGCPPTAEALIYGIL 171 +PGC E ++ G++ Sbjct: 123 IPGCAVRPEDVVAGVV 138 >gi|238619636|ref|YP_002914462.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Sulfolobus islandicus M.16.4] gi|238380706|gb|ACR41794.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Sulfolobus islandicus M.16.4] Length = 201 Score = 121 bits (305), Expect = 3e-26, Method: Composition-based stats. Identities = 39/131 (29%), Positives = 66/131 (50%), Gaps = 13/131 (9%) Query: 49 WARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMA 107 + R+ L + G C +E+ S P YD+ RF +PR +D ++V G +T KM Sbjct: 81 FKRSFYLYPIDSGTCGGCNMELKLISSPEYDMTRFSIFFTNTPRHADALVVMGVMTEKMK 140 Query: 108 SALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD--IYVPGCPPTAEA 165 L++ Y+ M EP+ VI +G+CA GG VP++ + +PGCPP Sbjct: 141 EVLKKAYEAMQEPKVVILLGACAISGGIIGEG----------VPLEAVVEIPGCPPNPFT 190 Query: 166 LIYGILLLQKK 176 ++ ++ ++ K Sbjct: 191 ILEALMKVKGK 201 >gi|323477271|gb|ADX82509.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Sulfolobus islandicus HVE10/4] Length = 201 Score = 121 bits (305), Expect = 3e-26, Method: Composition-based stats. Identities = 39/129 (30%), Positives = 66/129 (51%), Gaps = 13/129 (10%) Query: 49 WARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMA 107 + R+ L + G C +E+ S P YD+ RF +PR +D ++V G +T KM Sbjct: 81 FKRSFYLYPIDSGTCGGCNMELKLISSPEYDMTRFSIFFTNTPRHADALVVMGVMTEKMK 140 Query: 108 SALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD--IYVPGCPPTAEA 165 L++ Y+ MPEP+ VI +G+CA GG VP++ + +PGCPP Sbjct: 141 EVLKKAYEAMPEPKVVILLGACAISGGIIGEG----------VPLEAVVEIPGCPPNPFT 190 Query: 166 LIYGILLLQ 174 ++ ++ ++ Sbjct: 191 ILEALMKVK 199 >gi|284997591|ref|YP_003419358.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Sulfolobus islandicus L.D.8.5] gi|284445486|gb|ADB86988.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Sulfolobus islandicus L.D.8.5] Length = 201 Score = 121 bits (305), Expect = 4e-26, Method: Composition-based stats. Identities = 39/131 (29%), Positives = 66/131 (50%), Gaps = 13/131 (9%) Query: 49 WARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMA 107 + R+ L + G C +E+ S P YD+ RF +PR +D ++V G +T KM Sbjct: 81 FKRSFYLYPIDSGTCGGCNMELKLISSPEYDMTRFSIFFTNTPRHADALVVMGVMTEKMK 140 Query: 108 SALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD--IYVPGCPPTAEA 165 L++ Y+ MPEP+ VI +G+CA GG VP++ + + GCPP Sbjct: 141 EVLKKAYEAMPEPKVVILLGACAISGGIIGEG----------VPLEAVVEISGCPPNPFT 190 Query: 166 LIYGILLLQKK 176 ++ ++ ++ K Sbjct: 191 ILEALMKVKGK 201 >gi|323474538|gb|ADX85144.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Sulfolobus islandicus REY15A] Length = 201 Score = 121 bits (305), Expect = 4e-26, Method: Composition-based stats. Identities = 39/129 (30%), Positives = 66/129 (51%), Gaps = 13/129 (10%) Query: 49 WARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMA 107 + R+ L + G C +E+ S P YD+ RF +PR +D ++V G +T KM Sbjct: 81 FKRSFYLYPIDSGTCGGCNMELKLISSPEYDMTRFSIFFTNTPRHADALVVMGVMTEKMK 140 Query: 108 SALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD--IYVPGCPPTAEA 165 L++ Y+ MPEP+ VI +G+CA GG VP++ + +PGCPP Sbjct: 141 EVLKKAYEAMPEPKVVILLGACAISGGIIGEG----------VPLEAVVEIPGCPPNPFT 190 Query: 166 LIYGILLLQ 174 ++ ++ ++ Sbjct: 191 ILEALMKVK 199 >gi|307353348|ref|YP_003894399.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanoplanus petrolearius DSM 11571] gi|307156581|gb|ADN35961.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanoplanus petrolearius DSM 11571] Length = 160 Score = 121 bits (303), Expect = 5e-26, Method: Composition-based stats. Identities = 36/144 (25%), Positives = 75/144 (52%), Gaps = 4/144 (2%) Query: 40 VTSVDQLVTWARTGSL---MWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVM 96 ++ + +L R+ S+ C +E++ PRYDLE++G +PR++DV+ Sbjct: 1 MSIIQKLKNKVRSKSIHVSYVNVGSCNGCDIEILACLSPRYDLEQYGIYVHNNPREADVL 60 Query: 97 IVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR-GCDRIVPVDIY 155 ++ G L + L +++++PEP+ I++G+C G ++ S V + +P+ Sbjct: 61 LITGALCEQWDDKLVSLWEKIPEPKAAITIGNCPVSGCVFNRRGSYVNPPVSKHIPIAAS 120 Query: 156 VPGCPPTAEALIYGILLLQKKIRR 179 +PGCPP ++ IL + ++ + Sbjct: 121 IPGCPPRPSEIVSTILSIAPEVFK 144 >gi|146304195|ref|YP_001191511.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Metallosphaera sedula DSM 5348] gi|145702445|gb|ABP95587.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Metallosphaera sedula DSM 5348] Length = 203 Score = 121 bits (303), Expect = 6e-26, Method: Composition-based stats. Identities = 43/134 (32%), Positives = 71/134 (52%), Gaps = 9/134 (6%) Query: 47 VTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNK 105 VT+ R+ L + G C +E+ S P+YD+ RFG +P+ +D +++ G L + Sbjct: 78 VTFKRSFYLYPLDAGSCGGCNLELRLISSPQYDMTRFGIFFTNTPKHADALLIMGNLGKR 137 Query: 106 MASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEA 165 M +RR YD +P P+ VI +G+CA GG V G + D+ VPGCPPT + Sbjct: 138 MEEVIRRAYDVIPSPKLVILLGTCAISGG--------VTGIPPDIRGDVIVPGCPPTPAS 189 Query: 166 LIYGILLLQKKIRR 179 ++ ++ + R+ Sbjct: 190 ILDALIKAKGGDRK 203 >gi|78708331|gb|ABB47306.1| NAD, putative [Oryza sativa Japonica Group] Length = 141 Score = 120 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 41/76 (53%), Positives = 56/76 (73%), Gaps = 1/76 (1%) Query: 106 MASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGCDRIVPVDIYVPGCPPTAE 164 MA +L R+Y+QMPEP+YVI+MG+C GG + SYS VR D+++PVD+Y+PGCPP E Sbjct: 1 MAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRRVDKLIPVDVYLPGCPPKPE 60 Query: 165 ALIYGILLLQKKIRRV 180 A+I + L+KKI R Sbjct: 61 AVIDALTKLRKKISRE 76 >gi|110289458|gb|AAP54717.2| NAD, putative [Oryza sativa Japonica Group] Length = 141 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 42/76 (55%), Positives = 57/76 (75%), Gaps = 1/76 (1%) Query: 106 MASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGCDRIVPVDIYVPGCPPTAE 164 MA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++PVD+Y+PGCPP E Sbjct: 1 MAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPE 60 Query: 165 ALIYGILLLQKKIRRV 180 A+I + L+KKI R Sbjct: 61 AVIDALTKLRKKISRE 76 >gi|294340395|emb|CAZ88776.1| Putative NADH ubiquinone oxidoreductase, 20 kDa subunit [Thiomonas sp. 3As] Length = 273 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 42/121 (34%), Positives = 66/121 (54%), Gaps = 1/121 (0%) Query: 44 DQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL 102 + + ++ + + G C E+ P Y+L R G SPR +D+++V G + Sbjct: 127 QAMKGFGKSLHIRHVDTGSCNGCESELQALLNPFYNLHRLGVFFTPSPRFADLLLVTGPV 186 Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162 T M L R Y+ MP+PR+V++ G+CA GGG Y+ G D I+PVD+++PGCPP Sbjct: 187 TAAMREPLLRTYEAMPQPRWVMAAGTCATGGGTNGGGYACHEGLDGILPVDVWLPGCPPN 246 Query: 163 A 163 Sbjct: 247 P 247 >gi|269128891|ref|YP_003302261.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Thermomonospora curvata DSM 43183] gi|268313849|gb|ACZ00224.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Thermomonospora curvata DSM 43183] Length = 158 Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 44/114 (38%), Positives = 64/114 (56%) Query: 60 FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119 C +E+ P +D ER+G ASPR +D ++V G +T M +ALRR Y+ +PE Sbjct: 42 GSCNGCELEIASVFGPVHDAERYGARLVASPRHADALLVTGPVTRNMETALRRTYEAVPE 101 Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLL 173 P+ VI++G CA G + +Y V +VPVD+ VPGCPP E + + L Sbjct: 102 PKVVIALGDCARNCGVFAGAYGVAGAVGDVVPVDVEVPGCPPRPEDITKALRGL 155 >gi|221104717|ref|XP_002169223.1| PREDICTED: similar to CG9172 CG9172-PA, partial [Hydra magnipapillata] Length = 70 Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 58/70 (82%), Positives = 63/70 (90%) Query: 58 MTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQM 117 MTFGLACCAVEMM + PRYD++RFG RASPRQ+DVMIVAGTLTNKMA ALRRVYDQM Sbjct: 1 MTFGLACCAVEMMHFAAPRYDMDRFGVVFRASPRQADVMIVAGTLTNKMAPALRRVYDQM 60 Query: 118 PEPRYVISMG 127 PEPR+VISMG Sbjct: 61 PEPRWVISMG 70 >gi|13542288|ref|NP_111976.1| Ni,Fe-hydrogenase III small subunit [Thermoplasma volcanium GSS1] gi|14325721|dbj|BAB60624.1| formate hydrogenlyase subunit 2 [Thermoplasma volcanium GSS1] Length = 222 Score = 118 bits (296), Expect = 4e-25, Method: Composition-based stats. Identities = 42/147 (28%), Positives = 66/147 (44%), Gaps = 9/147 (6%) Query: 35 HKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQS 93 + F + + R+ + + G C +E + P+YD R G +PR + Sbjct: 73 QRIFTIKKTEDTFR--RSFHVFPIDSGACGACNMEFLSIFSPQYDANRLGIFMVNTPRYA 130 Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD 153 D +IV G +T M AL R Y+ MPEP+ VI+MG+CA GG + + Sbjct: 131 DALIVMGVMTPGMKEALDRAYEAMPEPKLVIAMGACAVTGGIMGENP------LDREKYN 184 Query: 154 IYVPGCPPTAEALIYGILLLQKKIRRV 180 + + GCPP+ LI + K R+ Sbjct: 185 VEIAGCPPSPYTLIAALNAAMKDKRKA 211 >gi|254166691|ref|ZP_04873545.1| NADH ubiquinone oxidoreductase, 20 Kd subunit family [Aciduliprofundum boonei T469] gi|289596449|ref|YP_003483145.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Aciduliprofundum boonei T469] gi|197624301|gb|EDY36862.1| NADH ubiquinone oxidoreductase, 20 Kd subunit family [Aciduliprofundum boonei T469] gi|289534236|gb|ADD08583.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Aciduliprofundum boonei T469] Length = 179 Score = 118 bits (296), Expect = 4e-25, Method: Composition-based stats. Identities = 39/120 (32%), Positives = 63/120 (52%), Gaps = 13/120 (10%) Query: 55 LMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRV 113 + + G + C E+ P+YD+ R GF PR +D+++V G T KM L+ Sbjct: 66 IFVLDVGSCSSCNREISLLGAPQYDMNRLGFFFTPVPRHADILLVIGEPTEKMIPVLKEA 125 Query: 114 YDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLL 173 Y+QMP+P+ V++ G+CAN ++I+ VD V GCPP A++ +L+L Sbjct: 126 YEQMPKPKIVVTAGACANE------------KIEKIIKVDARVSGCPPQPIAILKALLML 173 >gi|254167339|ref|ZP_04874191.1| NADH ubiquinone oxidoreductase, 20 Kd subunit family [Aciduliprofundum boonei T469] gi|197623602|gb|EDY36165.1| NADH ubiquinone oxidoreductase, 20 Kd subunit family [Aciduliprofundum boonei T469] Length = 179 Score = 118 bits (296), Expect = 4e-25, Method: Composition-based stats. Identities = 41/120 (34%), Positives = 64/120 (53%), Gaps = 13/120 (10%) Query: 55 LMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRV 113 + + G + C E+ + P+YDL R GF PR +D+++V G T KM L+ Sbjct: 66 IFVLDVGSCSSCNREISLLNSPQYDLHRLGFFFTPVPRHADILLVIGEPTEKMIPVLKEA 125 Query: 114 YDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLL 173 Y+QMPEP+ V++ G+CAN ++I+ VD V GCPP A++ +L+L Sbjct: 126 YEQMPEPKIVMTAGACANE------------KIEKIIKVDARVSGCPPQPIAILKALLML 173 >gi|297837947|ref|XP_002886855.1| hypothetical protein ARALYDRAFT_475566 [Arabidopsis lyrata subsp. lyrata] gi|297840985|ref|XP_002888374.1| hypothetical protein ARALYDRAFT_475599 [Arabidopsis lyrata subsp. lyrata] gi|297332696|gb|EFH63114.1| hypothetical protein ARALYDRAFT_475566 [Arabidopsis lyrata subsp. lyrata] gi|297334215|gb|EFH64633.1| hypothetical protein ARALYDRAFT_475599 [Arabidopsis lyrata subsp. lyrata] Length = 141 Score = 116 bits (292), Expect = 9e-25, Method: Composition-based stats. Identities = 43/76 (56%), Positives = 57/76 (75%), Gaps = 1/76 (1%) Query: 106 MASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGCDRIVPVDIYVPGCPPTAE 164 MA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++PVD+Y+PGCPP E Sbjct: 1 MAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPE 60 Query: 165 ALIYGILLLQKKIRRV 180 A+I I L+KKI R Sbjct: 61 AVIDAITKLRKKIARE 76 >gi|183981668|ref|YP_001849959.1| oxidoreductase [Mycobacterium marinum M] gi|183174994|gb|ACC40104.1| oxidoreductase [Mycobacterium marinum M] Length = 159 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 45/111 (40%), Positives = 61/111 (54%) Query: 60 FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119 C VE+ A P YD ERFG ASPR +D ++V G +T MA L+ P+ Sbjct: 43 GSCNGCEVEISGAFGPVYDAERFGARLVASPRHADALLVTGVVTRNMAQPLKNTLAATPQ 102 Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGI 170 PR VI+ G CA G + +Y VV +VPVD+ VPGCPPT + ++ + Sbjct: 103 PRVVIACGDCALNRGVFADAYGVVGAVSEVVPVDVEVPGCPPTPDQVVAAL 153 >gi|77554378|gb|ABA97174.1| NAD, putative [Oryza sativa Japonica Group] Length = 141 Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 41/76 (53%), Positives = 56/76 (73%), Gaps = 1/76 (1%) Query: 106 MASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGCDRIVPVDIYVPGCPPTAE 164 MA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++PVD+Y+P CPP E Sbjct: 1 MAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPSCPPKPE 60 Query: 165 ALIYGILLLQKKIRRV 180 A+I + L+KKI R Sbjct: 61 AVIDALTKLRKKISRE 76 >gi|257077039|ref|ZP_05571400.1| Ni,Fe-hydrogenase III small subunit [Ferroplasma acidarmanus fer1] Length = 199 Score = 115 bits (287), Expect = 4e-24, Method: Composition-based stats. Identities = 43/123 (34%), Positives = 60/123 (48%), Gaps = 9/123 (7%) Query: 55 LMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRV 113 L + G C VE P+YD RF +PR +D ++V G T+ M + L+ Sbjct: 84 LYPIDSGTCGACNVEFTTLFSPQYDTNRFKIFMSNTPRHADALVVMGVYTDGMEAVLKEA 143 Query: 114 YDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLL 173 YD MP P+ VI +G+CA GG R D+ DI V GCPPT ++I I+ Sbjct: 144 YDAMPSPKIVIGIGACALSGGIIGS-----RAMDKY---DIEVAGCPPTPASIINAIIKA 195 Query: 174 QKK 176 + K Sbjct: 196 RGK 198 >gi|268679821|ref|YP_003304252.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Sulfurospirillum deleyianum DSM 6946] gi|268617852|gb|ACZ12217.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Sulfurospirillum deleyianum DSM 6946] Length = 138 Score = 114 bits (286), Expect = 5e-24, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 57/118 (48%), Gaps = 1/118 (0%) Query: 56 MWMTFGLACCAVEMMQ-ASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVY 114 T C VE++ +P++ + G P +++++V G +T + L+ Sbjct: 9 RINTGSCNGCDVEILASVLLPKFGFDALGCVYTNDPTLANILLVTGAITARSTPYLQAAL 68 Query: 115 DQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILL 172 Q+P + V+++G C GG + SY++ D V VD+ + GCPP+ + + G+ Sbjct: 69 KQLPSKKIVVALGICPISGGVFRDSYAITGPLDTFVDVDVNISGCPPSPKEIAQGLAQ 126 >gi|295673893|ref|XP_002797492.1| NADH-ubiquinone oxidoreductase 20 kDa subunit [Paracoccidioides brasiliensis Pb01] gi|226280142|gb|EEH35708.1| NADH-ubiquinone oxidoreductase 20 kDa subunit [Paracoccidioides brasiliensis Pb01] Length = 159 Score = 113 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 53/130 (40%), Positives = 70/130 (53%), Gaps = 12/130 (9%) Query: 27 SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP 86 RISS I+ + S+D++V WAR GSL ++FGLACC +EMM SMPRYD +R G Sbjct: 26 ERISSLISLQEEKNGSIDKVVNWAREGSLWPLSFGLACCNMEMMAVSMPRYDQDRLGTIF 85 Query: 87 RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGC 146 RASPRQSDV+IVA +T + PR ++ G G Y S + Sbjct: 86 RASPRQSDVIIVADAVTKQDG------------PRLAVTRGQVRGQAGSSRYLCSELSSN 133 Query: 147 DRIVPVDIYV 156 R + + YV Sbjct: 134 GRDIALSDYV 143 >gi|118617491|ref|YP_905823.1| oxidoreductase [Mycobacterium ulcerans Agy99] gi|118569601|gb|ABL04352.1| oxidoreductase [Mycobacterium ulcerans Agy99] Length = 159 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 44/111 (39%), Positives = 60/111 (54%) Query: 60 FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119 C VE+ A P YD ER G ASPR +D ++V G +T MA L+ P+ Sbjct: 43 GSCNGCEVEISGAFGPVYDAERVGARLVASPRHADALLVTGVVTRNMAQPLKNTLAATPQ 102 Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGI 170 PR VI+ G CA G + +Y VV +VPVD+ VPGCPPT + ++ + Sbjct: 103 PRVVIACGDCALNRGVFADAYGVVGAVSEVVPVDVEVPGCPPTPDQVVAAL 153 >gi|224035581|gb|ACN36866.1| unknown [Zea mays] Length = 73 Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats. Identities = 58/65 (89%), Positives = 61/65 (93%) Query: 117 MPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKK 176 MPEPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG+L LQKK Sbjct: 1 MPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGVLQLQKK 60 Query: 177 IRRVG 181 I R Sbjct: 61 INRRK 65 >gi|118103240|ref|XP_001234054.1| PREDICTED: hypothetical protein [Gallus gallus] Length = 187 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 67/169 (39%), Positives = 80/169 (47%), Gaps = 47/169 (27%) Query: 17 CSLEKVDADFSRISSEITHKG-FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMP 75 + K A + S T +G ++VT +D L+ WAR SL C Sbjct: 60 QAQPKSSAVVPKKSYVPTSRGEYIVTKLDDLINWARRTSLWPSMLAQQNC---------- 109 Query: 76 RYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY 135 + AL + PE CANGGGY Sbjct: 110 -----------------------------HLHPALLGLSAAEPEDG-------CANGGGY 133 Query: 136 YHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184 YHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQKKI+R ++ Sbjct: 134 YHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKIKRERKLQ 182 >gi|148259651|ref|YP_001233778.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Acidiphilium cryptum JF-5] gi|146401332|gb|ABQ29859.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Acidiphilium cryptum JF-5] Length = 164 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 35/127 (27%), Positives = 64/127 (50%), Gaps = 1/127 (0%) Query: 50 ARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108 R+ ++ + G C +E+ R + G A R +D+++V G T +A Sbjct: 23 GRSLAVRHVDAGSCGGCEIEIAACRRLRGGMAAHGIAMVEDLRAADILLVTGVATRNLAE 82 Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168 A+R+ M PR+V++ G CA GG + +V+ G ++PVD+ + GCPP ++ Sbjct: 83 AVRKSLAGMAPPRFVVAAGDCALDGGVFKGVPAVLGGVQAVIPVDLLIAGCPPAPRQILA 142 Query: 169 GILLLQK 175 G++ L + Sbjct: 143 GLVALVE 149 >gi|37718833|gb|AAR01704.1| putative NADH ubiquinone oxidoreductase [Oryza sativa Japonica Group] Length = 97 Score = 111 bits (277), Expect = 6e-23, Method: Composition-based stats. Identities = 46/101 (45%), Positives = 59/101 (58%), Gaps = 8/101 (7%) Query: 47 VTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKM 106 + WAR GS+ MTFGLAC AVEMM A RYD +RFG SPRQSD MI+ GTLTNKM Sbjct: 1 MNWARRGSIWPMTFGLACFAVEMMHAGASRYDFDRFGVIFHPSPRQSDCMIITGTLTNKM 60 Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCD 147 ALR+ P + +++ +C + S +V+ Sbjct: 61 VPALRKAL----IPTFNVNLETCHK----FDTSTNVLNAWT 93 >gi|58038760|ref|YP_190724.1| hypothetical protein GOX0285 [Gluconobacter oxydans 621H] gi|58001174|gb|AAW60068.1| Hypothetical protein GOX0285 [Gluconobacter oxydans 621H] Length = 161 Score = 110 bits (275), Expect = 9e-23, Method: Composition-based stats. Identities = 32/114 (28%), Positives = 60/114 (52%) Query: 60 FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119 G C +E+ + + LE+ GF + P +D +++ G +T A + RV+ MP Sbjct: 45 GGCEGCFMEIESLNGSAFALEQAGFVCVSDPADADWLLLTGAVTRVCAEMVDRVWRAMPP 104 Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLL 173 R +I++G+CA GG + Y+ + G + + PV + GCPP+ + ++ + L Sbjct: 105 GRSLIAVGACAVDGGPFPAGYATLGGLEALTPVRRSIAGCPPSPDDILRALQEL 158 >gi|326403379|ref|YP_004283460.1| putative NADH ubiquinone oxidoreductase [Acidiphilium multivorum AIU301] gi|325050240|dbj|BAJ80578.1| putative NADH ubiquinone oxidoreductase [Acidiphilium multivorum AIU301] Length = 164 Score = 110 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 35/127 (27%), Positives = 64/127 (50%), Gaps = 1/127 (0%) Query: 50 ARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108 R+ ++ + G C +E+ R + G A R +D+++V G T +A Sbjct: 23 GRSLAVRHVDAGSCGGCEIEIAACRRLRGGMAAQGIAMVEDLRAADILLVTGVATRNLAE 82 Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168 A+R+ M PR+V++ G CA GG + +V+ G ++PVD+ + GCPP ++ Sbjct: 83 AVRKSLAGMAPPRFVVAAGDCALDGGVFKGVPAVLGGVQAVIPVDLLIAGCPPAPRQILA 142 Query: 169 GILLLQK 175 G++ L + Sbjct: 143 GLVALVE 149 >gi|90186408|gb|ABD91507.1| putative NADH dehydrogenase (ubiquinone) chain PSST precursor [Oryza sativa Indica Group] Length = 93 Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats. Identities = 45/64 (70%), Positives = 49/64 (76%) Query: 47 VTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKM 106 + WAR GS+ MTFGLACCAVEMM A YDL+RFG R SPRQSD MI+AGTLTNKM Sbjct: 1 MNWARRGSIWPMTFGLACCAVEMMHAGASCYDLDRFGVIFRPSPRQSDCMIIAGTLTNKM 60 Query: 107 ASAL 110 A AL Sbjct: 61 APAL 64 >gi|164513234|emb|CAP11710.1| NADH dehydrogenase subunit K [Acorus calamus] gi|164513236|emb|CAP11711.1| NADH dehydrogenase subunit K [Acorus gramineus] Length = 72 Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats. Identities = 35/72 (48%), Positives = 54/72 (75%) Query: 57 WMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQ 116 + +G +CC +E R+D +R+G PR+SPRQ+D+++ AGT+T KMA +L R+Y+Q Sbjct: 1 PLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQ 60 Query: 117 MPEPRYVISMGS 128 MPEP+YVI+MG+ Sbjct: 61 MPEPKYVIAMGA 72 >gi|114329051|ref|YP_746208.1| formate hydrogenlyase subunit 7 [Granulibacter bethesdensis CGDNIH1] gi|114317225|gb|ABI63285.1| formate hydrogenlyase subunit 7 [Granulibacter bethesdensis CGDNIH1] Length = 174 Score = 106 bits (266), Expect = 1e-21, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 60/119 (50%), Gaps = 1/119 (0%) Query: 55 LMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVY 114 L + G + C +E+ L R G SP +D++++ G + + SA+ + + Sbjct: 49 LHVESGGGSACLLELEALRAAPGLLARHGLRFVTSPLHADILLITGDGCHNLTSAIHQAW 108 Query: 115 DQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLL 173 + MP PR+ I++G A G G SY+ + +P D+ +PG PP A+ ++ G+ L Sbjct: 109 EAMPGPRWAIAVGDGAAGDGLLRGSYASTGNMEE-IPFDLVIPGSPPAADTILSGLRAL 166 >gi|255565794|ref|XP_002523886.1| NADH-ubiquinone oxidoreductase I subunit j, putative [Ricinus communis] gi|223536816|gb|EEF38455.1| NADH-ubiquinone oxidoreductase I subunit j, putative [Ricinus communis] Length = 188 Score = 106 bits (264), Expect = 2e-21, Method: Composition-based stats. Identities = 39/76 (51%), Positives = 55/76 (72%), Gaps = 1/76 (1%) Query: 106 MASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGCDRIVPVDIYVPGCPPTAE 164 MA +L R+Y+Q+PEP+YVI+MG+C GG + SYS +RG D+++PVD Y+ GCPP E Sbjct: 1 MAPSLVRLYEQIPEPKYVIAMGACTITGGMFSTDSYSTIRGVDKLIPVDAYLSGCPPKPE 60 Query: 165 ALIYGILLLQKKIRRV 180 A+I I L+KK+ R Sbjct: 61 AVIDAITKLRKKLSRE 76 >gi|48477897|ref|YP_023603.1| formate hydrogenlyase subunit 7 [Picrophilus torridus DSM 9790] gi|48430545|gb|AAT43410.1| formate hydrogenlyase subunit 7 [Picrophilus torridus DSM 9790] Length = 202 Score = 105 bits (261), Expect = 4e-21, Method: Composition-based stats. Identities = 34/139 (24%), Positives = 63/139 (45%), Gaps = 11/139 (7%) Query: 37 GFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDV 95 + S+D+ + ++ ++ + G C E+ S+P YDL R+ +PR +D Sbjct: 73 SIISGSIDK--KFRKSLNIYSIDSGTCGACNSELFSISIPEYDLTRYHIFFTNTPRHADA 130 Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155 +I++G M + MP+P Y+I +G+CA GG + + + Sbjct: 131 IILSGIYNESMKDVIDNALGAMPKPGYLILLGACALSGGIIGSGHE--------IKAVLE 182 Query: 156 VPGCPPTAEALIYGILLLQ 174 +PGCPP ++ G+ L Sbjct: 183 IPGCPPNPYTILKGLRRLM 201 >gi|164513246|emb|CAP11716.1| NADH dehydrogenase subunit K [Betula insignis] gi|164513248|emb|CAP11717.1| NADH dehydrogenase subunit K [Betula pendula] Length = 67 Score = 104 bits (259), Expect = 7e-21, Method: Composition-based stats. Identities = 35/67 (52%), Positives = 51/67 (76%) Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 G +CC +E R+D +R+G PR+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP Sbjct: 1 GTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEP 60 Query: 121 RYVISMG 127 +YVI+MG Sbjct: 61 KYVIAMG 67 >gi|331664272|ref|ZP_08365178.1| formate hydrogenlyase subunit 7 (FHL subunit 7) (Hydrogenase-3component G) [Escherichia coli TA143] gi|331058203|gb|EGI30184.1| formate hydrogenlyase subunit 7 (FHL subunit 7) (Hydrogenase-3component G) [Escherichia coli TA143] Length = 171 Score = 103 bits (258), Expect = 8e-21, Method: Composition-based stats. Identities = 38/87 (43%), Positives = 51/87 (58%), Gaps = 4/87 (4%) Query: 99 AGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPG 158 G +T M S R + P+P+ IS G+C N GG +H Y V G D+IVPVD+Y+PG Sbjct: 1 TGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPG 60 Query: 159 CPPTAEALIYGILL----LQKKIRRVG 181 CPPT A +YG + L++KI G Sbjct: 61 CPPTPAATLYGFAMALGLLEQKIHARG 87 >gi|237757076|ref|ZP_04585519.1| NADH-quinone oxidoreductase, chain 6 [Sulfurihydrogenibium yellowstonense SS-5] gi|237690765|gb|EEP59930.1| NADH-quinone oxidoreductase, chain 6 [Sulfurihydrogenibium yellowstonense SS-5] Length = 97 Score = 101 bits (251), Expect = 6e-20, Method: Composition-based stats. Identities = 42/70 (60%), Positives = 59/70 (84%), Gaps = 1/70 (1%) Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164 K+A LR +Y+QMP+P++VISMG CA+GGG + +YS ++G DRI+PVD+Y+PGCPPT + Sbjct: 1 KVAPMLRLIYEQMPDPKWVISMGGCASGGGPFP-TYSTLQGVDRIIPVDVYIPGCPPTPQ 59 Query: 165 ALIYGILLLQ 174 AL++GIL LQ Sbjct: 60 ALLWGILELQ 69 >gi|183221787|ref|YP_001839783.1| hydrogenase-4 subunit G [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189911861|ref|YP_001963416.1| metal (Ni/Fe) hydrogenase small subunit [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167776537|gb|ABZ94838.1| Metal (Ni/Fe) hydrogenase, small subunit [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167780209|gb|ABZ98507.1| Hydrogenase-4 subunit G [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 273 Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 31/116 (26%), Positives = 55/116 (47%), Gaps = 11/116 (9%) Query: 60 FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119 G E+ + +D ER G ASP+ +D ++ +G ++ +M L+ +D + E Sbjct: 147 GGNNTVESELNASFNSVFDSEREGIRCVASPKHADTIVFSGPISEQMEGPLQTAWDVLSE 206 Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVP--VDIYVPGCPPTAEALIYGILLL 173 PR +I+ G+ A GG + +P D+Y+ G PP + ++ G LL Sbjct: 207 PRALIACGTEAVSGGLFPKG---------KIPKEPDLYISGDPPRPDVILQGFRLL 253 >gi|148828675|gb|ABR13960.1| NDH-K [Thuja plicata] Length = 103 Score = 99 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 26/82 (31%), Positives = 45/82 (54%) Query: 20 EKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDL 79 ++ S + + T + T+++ L WAR SL + +G +CC +E R+D Sbjct: 22 PAINPIESSLLHQATPNSVISTTLNDLSNWARLSSLWPLLYGTSCCFIEFASLIGSRFDF 81 Query: 80 ERFGFAPRASPRQSDVMIVAGT 101 +R+G PR+SPRQ+D++I T Sbjct: 82 DRYGLVPRSSPRQADLLITPPT 103 >gi|218513798|ref|ZP_03510638.1| NADH-ubiquinone oxidoreductase protein, chain B [Rhizobium etli 8C-3] Length = 77 Score = 99.6 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 39/67 (58%), Positives = 54/67 (80%), Gaps = 1/67 (1%) Query: 117 MPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKK 176 MPEPR+VI+MG+CA GG Y+ +Y+VV+G + VPVD++VPGCPP EAL++G LLLQ+K Sbjct: 1 MPEPRWVIAMGTCAISGGVYN-TYAVVQGSETFVPVDVHVPGCPPRPEALMHGFLLLQEK 59 Query: 177 IRRVGNV 183 I+R + Sbjct: 60 IKRSRAL 66 >gi|289804981|ref|ZP_06535610.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 89 Score = 99.6 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 48/90 (53%), Positives = 64/90 (71%), Gaps = 3/90 (3%) Query: 66 AVEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124 VEM+ + +D+ RFG RASPRQ+D+M+VAGT KMA ++R+YDQM EP++VI Sbjct: 1 YVEMVTSFTAVHDVARFGAEVLRASPRQADLMVVAGTCFTKMAPVIQRLYDQMLEPKWVI 60 Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154 SMG+CAN GG Y YSVV+G +PVD+ Sbjct: 61 SMGACANSGGMY-DIYSVVQGLIS-LPVDV 88 >gi|117927935|ref|YP_872486.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Acidothermus cellulolyticus 11B] gi|117648398|gb|ABK52500.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Acidothermus cellulolyticus 11B] Length = 269 Score = 98.1 bits (243), Expect = 6e-19, Method: Composition-based stats. Identities = 38/116 (32%), Positives = 53/116 (45%), Gaps = 18/116 (15%) Query: 66 AVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVIS 125 E++ P YD+ R G ASPR +DV++V G + MA+ L R P P VI+ Sbjct: 139 EWEVLALLNPVYDIHRLGIFFTASPRHADVLLVTGVGSRGMAAPLARTLQAAPRPLVVIA 198 Query: 126 MGSCANGGGYYHYSYSVVRGCDRIVP------------------VDIYVPGCPPTA 163 G+ A GG H +Y+ G ++ VDI+VPG PPT Sbjct: 199 AGTDAISGGLVHPTYATSGGIGDLIAATPDSAGATGAADGDPVRVDIWVPGSPPTP 254 >gi|300951811|ref|ZP_07165624.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 116-1] gi|300448958|gb|EFK12578.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 116-1] Length = 116 Score = 96.1 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 26/75 (34%), Positives = 40/75 (53%) Query: 60 FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119 G C +E+ A P +D ERFG +SPR +D+++ G +T M R Y+ P+ Sbjct: 42 GGCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMRMPALRAYESAPD 101 Query: 120 PRYVISMGSCANGGG 134 + +S G+C GGG Sbjct: 102 HKICVSYGACGVGGG 116 >gi|164513262|emb|CAP11724.1| NADH dehydrogenase subunit K [Paeonia kavachensis] gi|164513264|emb|CAP11725.1| NADH dehydrogenase [Paeonia tenuifolia] gi|164513266|emb|CAP11726.1| NADH dehydrogenase [Sophora microphylla] gi|164513268|emb|CAP11727.1| NADH dehydrogenase [Sophora toromiro] Length = 63 Score = 96.1 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 29/63 (46%), Positives = 45/63 (71%) Query: 57 WMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQ 116 + +G +CC +E R+D +R+G PR+SPRQ+D+++ AGT+T KMA +L R+Y+Q Sbjct: 1 PLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQ 60 Query: 117 MPE 119 MPE Sbjct: 61 MPE 63 >gi|300820847|ref|ZP_07100997.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 119-7] gi|331669229|ref|ZP_08370077.1| hydrogenase-4 component I [Escherichia coli TA271] gi|331678474|ref|ZP_08379149.1| hydrogenase-4 component I [Escherichia coli H591] gi|300526600|gb|EFK47669.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 119-7] gi|331064423|gb|EGI36334.1| hydrogenase-4 component I [Escherichia coli TA271] gi|331074934|gb|EGI46254.1| hydrogenase-4 component I [Escherichia coli H591] Length = 173 Score = 95.0 bits (235), Expect = 4e-18, Method: Composition-based stats. Identities = 26/76 (34%), Positives = 41/76 (53%) Query: 60 FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119 G C +E+ A P +D ERFG +SPR +D+++ G +T M R Y+ P+ Sbjct: 42 GGCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMRMPALRAYESAPD 101 Query: 120 PRYVISMGSCANGGGY 135 + +S G+C GGG+ Sbjct: 102 HKICVSYGACGAGGGF 117 >gi|323177391|gb|EFZ62979.1| hydrogenase-4 component I [Escherichia coli 1180] Length = 170 Score = 95.0 bits (235), Expect = 4e-18, Method: Composition-based stats. Identities = 26/76 (34%), Positives = 41/76 (53%) Query: 60 FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119 G C +E+ A P +D ERFG +SPR +D+++ G +T M R Y+ P+ Sbjct: 39 GGCNACEIEIFAAITPVFDAERFGIKVISSPRHADILLFTGAVTRAMRMPALRAYESAPD 98 Query: 120 PRYVISMGSCANGGGY 135 + +S G+C GGG+ Sbjct: 99 HKICVSYGACGAGGGF 114 >gi|256017364|ref|ZP_05431229.1| hydrogenase 4, Fe-S subunit [Shigella sp. D9] gi|323156092|gb|EFZ42251.1| hydrogenase-4 component I [Escherichia coli EPECa14] gi|323944709|gb|EGB40776.1| NADH ubiquinone oxidoreductase [Escherichia coli H120] Length = 173 Score = 94.6 bits (234), Expect = 5e-18, Method: Composition-based stats. Identities = 26/76 (34%), Positives = 41/76 (53%) Query: 60 FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119 G C +E+ A P +D ERFG +SPR +D+++ G +T M R Y+ P+ Sbjct: 42 GGCNACEIEIFAAITPVFDAERFGIKVISSPRHADILLFTGAVTRAMRMPALRAYESAPD 101 Query: 120 PRYVISMGSCANGGGY 135 + +S G+C GGG+ Sbjct: 102 HKICVSYGACGAGGGF 117 >gi|307312517|ref|ZP_07592150.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Escherichia coli W] gi|306907440|gb|EFN37944.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Escherichia coli W] gi|323184454|gb|EFZ69829.1| hydrogenase-4 component I [Escherichia coli 1357] Length = 173 Score = 94.6 bits (234), Expect = 5e-18, Method: Composition-based stats. Identities = 26/76 (34%), Positives = 41/76 (53%) Query: 60 FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119 G C +E+ A P +D ERFG +SPR +D+++ G +T M R Y+ P+ Sbjct: 42 GGCNACEIEIFAAITPVFDAERFGIKVISSPRHADILLFTGAVTRAMRMPALRAYESAPD 101 Query: 120 PRYVISMGSCANGGGY 135 + +S G+C GGG+ Sbjct: 102 HKICVSYGACGAGGGF 117 >gi|164513258|emb|CAP11722.1| NADH dehydrogenase subunit K [Hieracium leyianum] gi|164513260|emb|CAP11723.1| NADH dehydrogenase subunit K [Hieracium pellucidum] Length = 61 Score = 94.2 bits (233), Expect = 8e-18, Method: Composition-based stats. Identities = 29/60 (48%), Positives = 44/60 (73%) Query: 60 FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119 +G +CC +E R+D +R+G PR+SPRQ+D+++ AGT+T KMA +L R+Y+QMPE Sbjct: 2 YGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPE 61 >gi|73658458|emb|CAI99039.1| NADH dehydrogenase 32 kD subunit [Arabidopsis thaliana] gi|73658460|emb|CAI99042.1| NADH dehydrogenase 32 kD subunit [Arabidopsis thaliana] Length = 114 Score = 93.1 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 33/61 (54%), Positives = 44/61 (72%), Gaps = 1/61 (1%) Query: 121 RYVISMGSCANGGGYYH-YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179 +YVI+MG+C GG + SYS VRG D+++PVD+Y+PGCPP EA+I I L+KKI R Sbjct: 1 KYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKKIAR 60 Query: 180 V 180 Sbjct: 61 E 61 >gi|164513250|emb|CAP11718.1| NADH dehydrogenase subunit K [Coffea mauritiana] gi|164513252|emb|CAP11719.1| NADH dehydrogenase subunit K [Coffea myrtifolia] Length = 61 Score = 92.3 bits (228), Expect = 3e-17, Method: Composition-based stats. Identities = 32/61 (52%), Positives = 47/61 (77%) Query: 67 VEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISM 126 +E R+D +R+G PR+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+M Sbjct: 1 MEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAM 60 Query: 127 G 127 G Sbjct: 61 G 61 >gi|308375059|ref|ZP_07667937.1| oxidoreductase [Mycobacterium tuberculosis SUMu007] gi|308347618|gb|EFP36469.1| oxidoreductase [Mycobacterium tuberculosis SUMu007] Length = 143 Score = 91.5 bits (226), Expect = 4e-17, Method: Composition-based stats. Identities = 32/76 (42%), Positives = 41/76 (53%) Query: 60 FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119 C VE+ A P YD ERFG ASPR +D ++V G +T+ MA LR+ + P Sbjct: 31 GSCNGCEVEISGAFGPVYDAERFGARLVASPRHADALLVTGVVTHNMAGPLRKTLEATPR 90 Query: 120 PRYVISMGSCANGGGY 135 PR VI+ G CA G Sbjct: 91 PRVVIACGDCALNRGC 106 >gi|164513238|emb|CAP11712.1| NADH dehydrogenase subunit K [Aglaia korthalsii] gi|164513240|emb|CAP11713.1| NADH dehydrogenase subunit K [Aglaia odoratissima] Length = 60 Score = 91.1 bits (225), Expect = 7e-17, Method: Composition-based stats. Identities = 31/60 (51%), Positives = 46/60 (76%) Query: 67 VEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISM 126 +E R+D +R+G PR+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+M Sbjct: 1 IEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAM 60 >gi|327333152|gb|EGE74879.1| NADH dehydrogenase subunit [Propionibacterium acnes HL097PA1] Length = 132 Score = 90.4 bits (223), Expect = 1e-16, Method: Composition-based stats. Identities = 40/125 (32%), Positives = 59/125 (47%), Gaps = 8/125 (6%) Query: 45 QLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTN 104 + + W GS+ + LACC VE A + P +P V++V+GT+T Sbjct: 2 KFIDWFADGSVYVVDLALACCGVESGAAVSANAPVREE--IPDGAPI---VVLVSGTVTT 56 Query: 105 KMASALRRVYDQMP--EPRYVISMGSCANGGGYYHYSYSVVRGC-DRIVPVDIYVPGCPP 161 +A + ++ P V++ G+CA GG Y S VV G D V D ++PGCPP Sbjct: 57 GLAPVVSDTVHELKRNHPVDVVAFGACACAGGPYWDSAGVVAGLPDAGVDADHWIPGCPP 116 Query: 162 TAEAL 166 E L Sbjct: 117 GPETL 121 >gi|116326949|ref|YP_796669.1| metal (Ni/Fe) hydrogenase, small subunit [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116332385|ref|YP_802103.1| metal (Ni/Fe) hydrogenase, small subunit [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116119693|gb|ABJ77736.1| Metal (Ni/Fe) hydrogenase, small subunit [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116126074|gb|ABJ77345.1| Metal (Ni/Fe) hydrogenase, small subunit [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 273 Score = 90.0 bits (222), Expect = 1e-16, Method: Composition-based stats. Identities = 25/114 (21%), Positives = 48/114 (42%), Gaps = 7/114 (6%) Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 G E+ + +D E ASP+ +D ++ +G + M L ++ MP P Sbjct: 145 GNNTTEAEINASFNALFDSEASKIRVVASPKHADALVYSGPVGPNMEEPLNTAWETMPSP 204 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQ 174 + +++ GS A GG + + + D+++ G PP + +I L Sbjct: 205 KALVACGSEAVSGGLFK-----LGKLPK--EPDLFIGGDPPRPDVIISAFRYLM 251 >gi|50843355|ref|YP_056582.1| NADH dehydrogenase subunit [Propionibacterium acnes KPA171202] gi|289424815|ref|ZP_06426597.1| NADH ubiquinone oxidoreductase, 20 Kd subunit [Propionibacterium acnes SK187] gi|289427723|ref|ZP_06429435.1| NADH ubiquinone oxidoreductase, 20 Kd subunit [Propionibacterium acnes J165] gi|295131426|ref|YP_003582089.1| NADH ubiquinone oxidoreductase, 20 Kd subunit [Propionibacterium acnes SK137] gi|50840957|gb|AAT83624.1| NADH dehydrogenase subunit [Propionibacterium acnes KPA171202] gi|289154778|gb|EFD03461.1| NADH ubiquinone oxidoreductase, 20 Kd subunit [Propionibacterium acnes SK187] gi|289159214|gb|EFD07406.1| NADH ubiquinone oxidoreductase, 20 Kd subunit [Propionibacterium acnes J165] gi|291376669|gb|ADE00524.1| NADH ubiquinone oxidoreductase, 20 Kd subunit [Propionibacterium acnes SK137] gi|313763090|gb|EFS34454.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes HL013PA1] gi|313773016|gb|EFS38982.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes HL074PA1] gi|313794097|gb|EFS42119.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes HL110PA1] gi|313802411|gb|EFS43636.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes HL110PA2] gi|313807856|gb|EFS46340.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes HL087PA2] gi|313812031|gb|EFS49745.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes HL083PA1] gi|313812142|gb|EFS49856.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes HL025PA1] gi|313816888|gb|EFS54602.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes HL059PA1] gi|313819192|gb|EFS56906.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes HL046PA2] gi|313819769|gb|EFS57483.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes HL036PA1] gi|313823886|gb|EFS61600.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes HL036PA2] gi|313827247|gb|EFS64961.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes HL063PA1] gi|313828423|gb|EFS66137.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes HL063PA2] gi|313831120|gb|EFS68834.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes HL007PA1] gi|313833477|gb|EFS71191.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes HL056PA1] gi|313838111|gb|EFS75825.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes HL086PA1] gi|314914551|gb|EFS78382.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes HL005PA4] gi|314919205|gb|EFS83036.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes HL050PA1] gi|314920639|gb|EFS84470.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes HL050PA3] gi|314925722|gb|EFS89553.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes HL036PA3] gi|314931451|gb|EFS95282.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes HL067PA1] gi|314957011|gb|EFT01117.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes HL027PA1] gi|314957825|gb|EFT01928.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes HL002PA1] gi|314960666|gb|EFT04767.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes HL002PA2] gi|314963378|gb|EFT07478.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes HL082PA1] gi|314969727|gb|EFT13825.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes HL037PA1] gi|314974302|gb|EFT18398.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes HL053PA1] gi|314976926|gb|EFT21021.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes HL045PA1] gi|314979886|gb|EFT23980.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes HL072PA2] gi|314985816|gb|EFT29908.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes HL005PA1] gi|314988401|gb|EFT32492.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes HL005PA2] gi|314988825|gb|EFT32916.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes HL005PA3] gi|315077114|gb|EFT49189.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes HL053PA2] gi|315084887|gb|EFT56863.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes HL027PA2] gi|315087244|gb|EFT59220.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes HL002PA3] gi|315088977|gb|EFT60953.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes HL072PA1] gi|315096825|gb|EFT68801.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes HL038PA1] gi|315100090|gb|EFT72066.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes HL059PA2] gi|315100586|gb|EFT72562.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes HL046PA1] gi|315106026|gb|EFT78002.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes HL030PA1] gi|315109357|gb|EFT81333.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes HL030PA2] gi|327325634|gb|EGE67432.1| NADH dehydrogenase subunit [Propionibacterium acnes HL096PA2] gi|327328228|gb|EGE69995.1| NADH dehydrogenase subunit [Propionibacterium acnes HL096PA3] gi|327445304|gb|EGE91958.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes HL043PA1] gi|327446944|gb|EGE93598.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes HL043PA2] gi|327449059|gb|EGE95713.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes HL013PA2] gi|327451405|gb|EGE98059.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes HL092PA1] gi|327452595|gb|EGE99249.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes HL087PA3] gi|327457638|gb|EGF04293.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes HL083PA2] gi|328751922|gb|EGF65538.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes HL087PA1] gi|328756933|gb|EGF70549.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes HL020PA1] gi|328759054|gb|EGF72670.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes HL025PA2] gi|328762245|gb|EGF75737.1| NADH dehydrogenase subunit [Propionibacterium acnes HL099PA1] gi|332676294|gb|AEE73110.1| NADH dehydrogenase subunit [Propionibacterium acnes 266] Length = 132 Score = 90.0 bits (222), Expect = 1e-16, Method: Composition-based stats. Identities = 40/125 (32%), Positives = 60/125 (48%), Gaps = 8/125 (6%) Query: 45 QLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTN 104 + + W GS+ + LACC VE A + + P +P V++V+GT+T Sbjct: 2 KFIDWFADGSVYVVDLALACCGVESGAAVLANAPVREE--IPDGAPI---VVLVSGTVTT 56 Query: 105 KMASALRRVYDQMP--EPRYVISMGSCANGGGYYHYSYSVVRGC-DRIVPVDIYVPGCPP 161 +A + ++ P V++ G+CA GG Y S VV G D V D ++PGCPP Sbjct: 57 GLAPVVSDTVHELKRNHPVDVVAFGACACAGGPYWDSAGVVAGLPDAGVDADHWIPGCPP 116 Query: 162 TAEAL 166 E L Sbjct: 117 GPETL 121 >gi|314924059|gb|EFS87890.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes HL001PA1] gi|314965030|gb|EFT09129.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes HL082PA2] gi|314983106|gb|EFT27198.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes HL110PA3] gi|315090649|gb|EFT62625.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes HL110PA4] gi|315093837|gb|EFT65813.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes HL060PA1] gi|315104055|gb|EFT76031.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes HL050PA2] gi|327326472|gb|EGE68261.1| NADH dehydrogenase subunit [Propionibacterium acnes HL103PA1] Length = 132 Score = 89.6 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 41/125 (32%), Positives = 59/125 (47%), Gaps = 8/125 (6%) Query: 45 QLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTN 104 + + W GS+ + LACC VE A + P +P V+ V+GT+T Sbjct: 2 KFIDWFADGSVYVVDLALACCGVESGAAVSANAPVREE--IPDGAPI---VVFVSGTVTT 56 Query: 105 KMASALRRVYDQMP--EPRYVISMGSCANGGGYYHYSYSVVRGC-DRIVPVDIYVPGCPP 161 +A +R ++ P V++ G+CA GG Y S VV G D V D ++PGCPP Sbjct: 57 GLAPVVRDTVGELKRNHPVDVVAFGACACAGGPYWDSAGVVAGLPDAGVDADHWIPGCPP 116 Query: 162 TAEAL 166 E L Sbjct: 117 GPETL 121 >gi|108708858|gb|ABF96653.1| NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial precursor, putative [Oryza sativa Japonica Group] Length = 86 Score = 89.2 bits (220), Expect = 3e-16, Method: Composition-based stats. Identities = 41/90 (45%), Positives = 52/90 (57%), Gaps = 8/90 (8%) Query: 58 MTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQM 117 MTFGLAC AVEMM A RYD +RFG SPRQSD MI+ GTLTNKM ALR+ Sbjct: 1 MTFGLACFAVEMMHAGASRYDFDRFGVIFHPSPRQSDCMIITGTLTNKMVPALRKAL--- 57 Query: 118 PEPRYVISMGSCANGGGYYHYSYSVVRGCD 147 P + +++ +C + S +V+ Sbjct: 58 -IPTFNVNLETCHK----FDTSTNVLNAWT 82 >gi|282855245|ref|ZP_06264577.1| NADH ubiquinone oxidoreductase, 20 Kd subunit [Propionibacterium acnes J139] gi|282581833|gb|EFB87218.1| NADH ubiquinone oxidoreductase, 20 Kd subunit [Propionibacterium acnes J139] Length = 132 Score = 89.2 bits (220), Expect = 3e-16, Method: Composition-based stats. Identities = 41/125 (32%), Positives = 59/125 (47%), Gaps = 8/125 (6%) Query: 45 QLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTN 104 + + W GS+ + LACC VE A + P +P V+ V+GT+T Sbjct: 2 KFIDWFADGSVYVVDLALACCGVESGAAVSANAPVREE--IPDGAPI---VVFVSGTVTT 56 Query: 105 KMASALRRVYDQMP--EPRYVISMGSCANGGGYYHYSYSVVRGC-DRIVPVDIYVPGCPP 161 +A +R ++ P V++ G+CA GG Y S VV G D V D ++PGCPP Sbjct: 57 GLAPVVRDTVGELKRNHPVDVMAFGACACAGGPYWDSAGVVAGLPDAGVDADHWIPGCPP 116 Query: 162 TAEAL 166 E L Sbjct: 117 GPETL 121 >gi|302421904|ref|XP_003008782.1| NADH-ubiquinone oxidoreductase 20 kDa subunit [Verticillium albo-atrum VaMs.102] gi|261351928|gb|EEY14356.1| NADH-ubiquinone oxidoreductase 20 kDa subunit [Verticillium albo-atrum VaMs.102] Length = 67 Score = 87.3 bits (215), Expect = 8e-16, Method: Composition-based stats. Identities = 45/79 (56%), Positives = 53/79 (67%), Gaps = 17/79 (21%) Query: 106 MASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEA 165 MA ALR+VYDQMPEPR Y+VVRGCDRIVPVD+YVPGCPPT+EA Sbjct: 1 MAPALRQVYDQMPEPR-----------------CYAVVRGCDRIVPVDVYVPGCPPTSEA 43 Query: 166 LIYGILLLQKKIRRVGNVK 184 L+YGI LQ+K+R + Sbjct: 44 LMYGIFQLQRKMRNTKITR 62 >gi|164513242|emb|CAP11714.1| NADH dehydrogenase subunit K [Begonia conchifolia] gi|164513244|emb|CAP11715.1| NADH dehydrogenase subunit K [Begonia plagioneura] Length = 56 Score = 87.3 bits (215), Expect = 9e-16, Method: Composition-based stats. Identities = 31/56 (55%), Positives = 45/56 (80%) Query: 72 ASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMG 127 R+D +R+G PR+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG Sbjct: 1 LIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMG 56 >gi|24216977|ref|NP_714458.1| metal (Ni/Fe) hydrogenase small subunit [Leptospira interrogans serovar Lai str. 56601] gi|24198376|gb|AAN51476.1| metal (Ni/Fe) hydrogenase small subunit [Leptospira interrogans serovar Lai str. 56601] Length = 273 Score = 86.9 bits (214), Expect = 1e-15, Method: Composition-based stats. Identities = 24/114 (21%), Positives = 48/114 (42%), Gaps = 7/114 (6%) Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 G E+ + +D E ASP+ +D ++ +G + M L ++ MP P Sbjct: 145 GNNTTEAEINASFNALFDSEASKIRVVASPKHADALVYSGPVGPNMEGPLDTAWETMPSP 204 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQ 174 + +++ GS A GG + + + D+++ G PP + ++ L Sbjct: 205 KALVACGSEAVSGGLFK-----LGKLPK--QPDLFIGGDPPRPDVIVSAFRYLM 251 >gi|45659241|ref|YP_003327.1| hydrogenase subunit [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|45602487|gb|AAS71964.1| hydrogenase subunit [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 273 Score = 86.5 bits (213), Expect = 1e-15, Method: Composition-based stats. Identities = 24/114 (21%), Positives = 48/114 (42%), Gaps = 7/114 (6%) Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 G E+ + +D E ASP+ +D ++ +G + M L ++ MP P Sbjct: 145 GNNTTEAEINASFNALFDSEASKIRVVASPKHADALVYSGPVGPNMEGPLDTAWETMPSP 204 Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQ 174 + +++ GS A GG + + + D+++ G PP + ++ L Sbjct: 205 KALVACGSEAVSGGLFK-----LGKLPK--QPDLFIGGDPPRPDVIVSAFRYLM 251 >gi|224538212|ref|ZP_03678751.1| hypothetical protein BACCELL_03103 [Bacteroides cellulosilyticus DSM 14838] gi|224520144|gb|EEF89249.1| hypothetical protein BACCELL_03103 [Bacteroides cellulosilyticus DSM 14838] Length = 91 Score = 86.5 bits (213), Expect = 1e-15, Method: Composition-based stats. Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 3/73 (4%) Query: 22 VDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDL 79 + ++ E+ G + +D + W R+ SL +TF +CC +E M RYD+ Sbjct: 19 DNETLEKLVRELNAGGANVALGVLDDFINWGRSNSLWPLTFATSCCGIEFMALGAARYDM 78 Query: 80 ERFGFAP-RASPR 91 RFGF RASPR Sbjct: 79 ARFGFEVARASPR 91 >gi|222625140|gb|EEE59272.1| hypothetical protein OsJ_11297 [Oryza sativa Japonica Group] Length = 89 Score = 85.7 bits (211), Expect = 2e-15, Method: Composition-based stats. Identities = 38/61 (62%), Positives = 41/61 (67%) Query: 58 MTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQM 117 MTFGLAC AVEMM A RYD +RFG SPRQSD MI+ GTLTNKM ALR+ Sbjct: 1 MTFGLACFAVEMMHAGASRYDFDRFGVIFHPSPRQSDCMIITGTLTNKMVPALRKSVHLP 60 Query: 118 P 118 P Sbjct: 61 P 61 >gi|213863448|ref|ZP_03386703.1| hydrogenase activity [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 72 Score = 85.4 bits (210), Expect = 3e-15, Method: Composition-based stats. Identities = 28/71 (39%), Positives = 39/71 (54%) Query: 77 YDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY 136 +D ERFG SPR +D+++ G +T M S R + P+P+ IS G+C N GG + Sbjct: 2 FDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIF 61 Query: 137 HYSYSVVRGCD 147 H Y V G D Sbjct: 62 HDLYCVWGGTD 72 >gi|313836232|gb|EFS73946.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes HL037PA2] gi|314927669|gb|EFS91500.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes HL044PA1] gi|314971332|gb|EFT15430.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes HL037PA3] gi|328906272|gb|EGG26047.1| NADH ubiquinone oxidoreductase, 20 Kd subunit [Propionibacterium sp. P08] Length = 132 Score = 84.6 bits (208), Expect = 5e-15, Method: Composition-based stats. Identities = 42/125 (33%), Positives = 63/125 (50%), Gaps = 8/125 (6%) Query: 45 QLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTN 104 + + W GS+ + LACC VE ++P R A+ V+ V+GT+T Sbjct: 2 KFIDWFADGSVYVVDLALACCGVESE-VAVPATAAVREEIPDGAAI----VVFVSGTVTT 56 Query: 105 KMASALRRVYDQMP--EPRYVISMGSCANGGGYYHYSYSVVRGC-DRIVPVDIYVPGCPP 161 +ASA+R D++ P V++ G+CA GG Y S V G D + D ++PGCPP Sbjct: 57 GLASAVRVTVDELKRNHPVDVVAFGACACAGGPYWDSAGVAAGLPDAGLDADHWIPGCPP 116 Query: 162 TAEAL 166 +AL Sbjct: 117 GPDAL 121 >gi|303254845|ref|ZP_07340933.1| formate hydrogenlyase, subunit G [Streptococcus pneumoniae BS455] gi|302598192|gb|EFL65250.1| formate hydrogenlyase, subunit G [Streptococcus pneumoniae BS455] Length = 106 Score = 84.2 bits (207), Expect = 7e-15, Method: Composition-based stats. Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 1/77 (1%) Query: 46 LVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTN 104 L R+ + + G C +E+ P +D ERFG ASPR +D+++ G +T Sbjct: 30 LKNIQRSAYVYRVDCGGCNGCEIEIFSTITPTFDAERFGIKVVASPRHADILLFTGAVTR 89 Query: 105 KMASALRRVYDQMPEPR 121 M + R Y P+P+ Sbjct: 90 AMRTPAMRAYQAAPDPK 106 >gi|218661622|ref|ZP_03517552.1| NADH dehydrogenase subunit B [Rhizobium etli IE4771] Length = 74 Score = 81.9 bits (201), Expect = 3e-14, Method: Composition-based stats. Identities = 38/68 (55%), Positives = 47/68 (69%) Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62 + + II + + DA F I++E+ KGFLVTS D+L+ WARTGSLMWMTFGL Sbjct: 7 VAQQPKGIIDPSTGKPIGSNDAFFGEINNELADKGFLVTSTDELINWARTGSLMWMTFGL 66 Query: 63 ACCAVEMM 70 ACCAVEMM Sbjct: 67 ACCAVEMM 74 >gi|241753592|ref|XP_002401137.1| NADH-plastoquinone oxidoreductase, putative [Ixodes scapularis] gi|215508356|gb|EEC17810.1| NADH-plastoquinone oxidoreductase, putative [Ixodes scapularis] Length = 162 Score = 81.5 bits (200), Expect = 5e-14, Method: Composition-based stats. Identities = 44/50 (88%), Positives = 47/50 (94%) Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPG 158 R+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRI+PVDIYVPG Sbjct: 76 WGRKVYDQMLEPRWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVPG 125 >gi|330993943|ref|ZP_08317873.1| Formate hydrogenlyase subunit 7 [Gluconacetobacter sp. SXCC-1] gi|329758889|gb|EGG75403.1| Formate hydrogenlyase subunit 7 [Gluconacetobacter sp. SXCC-1] Length = 166 Score = 80.7 bits (198), Expect = 8e-14, Method: Composition-based stats. Identities = 30/114 (26%), Positives = 55/114 (48%), Gaps = 1/114 (0%) Query: 59 TFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMP 118 T G C +E+ S D ++PRQ+ ++++ G+L+ +MA + + MP Sbjct: 42 TGGCTGCGLELRAVSRA-LDAGNAAIRFVSTPRQAGLLLLTGSLSVEMAPVVELAWQAMP 100 Query: 119 EPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILL 172 R + +G CA GG + SY+V+ G + +PGCPP ++ ++ Sbjct: 101 GSRLLAVVGDCAVDGGVFTPSYAVLGGVGGRAQASLSLPGCPPAPAMILEALIR 154 >gi|213028132|ref|ZP_03342579.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 102 Score = 79.6 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 20/84 (23%), Positives = 33/84 (39%), Gaps = 1/84 (1%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPR 91 + L R+ + + G C +E+ P +D ERFG SPR Sbjct: 18 TVDESIASMKASLLKNIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPR 77 Query: 92 QSDVMIVAGTLTNKMASALRRVYD 115 +D+++ G +T M S R + Sbjct: 78 HADILLFTGAVTRAMRSPALRAWQ 101 >gi|164513254|emb|CAP11720.1| NADH dehydrogenase subunit K [Dioscorea bulbifera] gi|164513256|emb|CAP11721.1| NADH dehydrogenase subunit K [Dioscorea schimperiana] Length = 52 Score = 79.6 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 30/52 (57%), Positives = 44/52 (84%) Query: 78 DLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSC 129 D +R+G PR+SPRQ+D+++ AGT+T KMA +L R+Y+QM EP+YVI+MG+C Sbjct: 1 DFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMAEPKYVIAMGAC 52 >gi|89671|pir||PX0053 NADH2 dehydrogenase (ubiquinone) (EC 1.6.5.3) 20K chain - bovine (fragments) Length = 96 Score = 78.8 bits (193), Expect = 3e-13, Method: Composition-based stats. Identities = 45/52 (86%), Positives = 47/52 (90%), Gaps = 4/52 (7%) Query: 110 LRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP 161 L +VYDQMPEPRYV+SMGSCANGGGYYHYSYSVVR IVPVDIYVPGCPP Sbjct: 36 LIKVYDQMPEPRYVVSMGSCANGGGYYHYSYSVVR----IVPVDIYVPGCPP 83 >gi|332295900|ref|YP_004437823.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Thermodesulfobium narugense DSM 14796] gi|332179003|gb|AEE14692.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Thermodesulfobium narugense DSM 14796] Length = 155 Score = 77.3 bits (189), Expect = 9e-13, Method: Composition-based stats. Identities = 25/100 (25%), Positives = 45/100 (45%), Gaps = 2/100 (2%) Query: 49 WARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMA 107 + R+ + + G E+ P+Y+L R G +PR++D++IV G T KM Sbjct: 33 FKRSIHIFCIDVGNDNALNFEIFALLSPKYNLHRLGIFFTQTPREADLLIVLGRPTEKMV 92 Query: 108 SALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146 + +QMPEP V+ + G + + +V+ Sbjct: 93 PLMLEAINQMPEPFGVLLTENNDLGLSFDNFDIPNVIGHI 132 >gi|1396038|dbj|BAA07792.1| ndhK [Anthoceros formosae] Length = 80 Score = 76.9 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 29/57 (50%) Query: 27 SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFG 83 S + E T ++T+ + WAR SL + +G +CC +E R+D +R+G Sbjct: 24 SSLPDETTSDSTILTTFNDFSNWARLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYG 80 >gi|213026204|ref|ZP_03340651.1| hydrogenase activity [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 58 Score = 75.7 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 28/53 (52%), Positives = 36/53 (67%) Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILL 172 P+ IS G+C N GG +H Y V G D+IVPVD+Y+PGCPPT A +YG + Sbjct: 5 PKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAM 57 >gi|333001062|gb|EGK20632.1| ech hydrogenase subunit C [Shigella flexneri K-272] gi|333015433|gb|EGK34772.1| ech hydrogenase subunit C [Shigella flexneri K-227] Length = 99 Score = 75.0 bits (183), Expect = 5e-12, Method: Composition-based stats. Identities = 20/82 (24%), Positives = 32/82 (39%), Gaps = 1/82 (1%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPR 91 + L R+ + + G C +E+ P +D ERFG SPR Sbjct: 18 TVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPR 77 Query: 92 QSDVMIVAGTLTNKMASALRRV 113 +D+++ G +T M S R Sbjct: 78 HADILLFTGAVTRAMRSPALRA 99 >gi|300903499|ref|ZP_07121424.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 84-1] gi|301302841|ref|ZP_07208969.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 124-1] gi|300404531|gb|EFJ88069.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 84-1] gi|300841776|gb|EFK69536.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 124-1] gi|315256505|gb|EFU36473.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 85-1] Length = 133 Score = 75.0 bits (183), Expect = 5e-12, Method: Composition-based stats. Identities = 17/48 (35%), Positives = 26/48 (54%) Query: 60 FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMA 107 G C +E+ A P +D ERFG +SPR +D+++ G +T M Sbjct: 42 GGCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMR 89 >gi|315079804|gb|EFT51780.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes HL078PA1] Length = 132 Score = 73.8 bits (180), Expect = 9e-12, Method: Composition-based stats. Identities = 41/125 (32%), Positives = 60/125 (48%), Gaps = 8/125 (6%) Query: 45 QLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTN 104 + + W GS+ + LACC VE A + + R P +P V++V+GT+T Sbjct: 2 KFIDWFADGSVYVVDLALACCGVESGAAVLANAPV-REEI-PDGAPI---VVLVSGTVTT 56 Query: 105 KMASALRRVYDQMP--EPRYVISMGSCANGGGYYHYSYSVVRGC-DRIVPVDIYVPGCPP 161 +A + ++ P V + G+CA GG Y S VV G D V D ++PGCPP Sbjct: 57 GLAPVVSDTVHELKRNHPVDVAAFGACACAGGPYWDSAGVVAGLPDAGVDADHWIPGCPP 116 Query: 162 TAEAL 166 E L Sbjct: 117 GPETL 121 >gi|149377240|ref|ZP_01894987.1| NADH dehydrogenase subunit B [Marinobacter algicola DG893] gi|149358428|gb|EDM46903.1| NADH dehydrogenase subunit B [Marinobacter algicola DG893] Length = 81 Score = 73.4 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 22/67 (32%), Positives = 28/67 (41%) Query: 17 CSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPR 76 E + R G L ++ V W R SL FGL+CC VEM A Sbjct: 15 RQQEPSEDPVKRQLERNVFTGKLSDVLNSAVNWGRKNSLWPYNFGLSCCYVEMTTAFTAP 74 Query: 77 YDLERFG 83 +D+ RFG Sbjct: 75 HDIARFG 81 >gi|303245121|ref|ZP_07331437.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanothermococcus okinawensis IH1] gi|302484504|gb|EFL47452.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanothermococcus okinawensis IH1] Length = 160 Score = 71.5 bits (174), Expect = 5e-11, Method: Composition-based stats. Identities = 23/97 (23%), Positives = 47/97 (48%), Gaps = 9/97 (9%) Query: 85 APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS----- 139 R P D+ +V G + +++ + + + + V+++G+CA GG YS Sbjct: 57 IERKIPDNIDIALVEGAVCLDDEHSIKDILETRKKAKIVVALGACAATGGVLRYSRGGQM 116 Query: 140 ----YSVVRGCDRIVPVDIYVPGCPPTAEALIYGILL 172 ++ ++ VD+ +PGCPP+ E ++ I+L Sbjct: 117 SKPAHASYVAVGDVIKVDLAIPGCPPSPETIVKVIIL 153 >gi|327399463|ref|YP_004340332.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Hippea maritima DSM 10411] gi|327182092|gb|AEA34273.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Hippea maritima DSM 10411] Length = 153 Score = 71.1 bits (173), Expect = 6e-11, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 50/121 (41%), Gaps = 10/121 (8%) Query: 19 LEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLAC-CAVEMMQASMPRY 77 ++++ F++ EI + + + + +E+ P+Y Sbjct: 10 IQRITEKFNKTKEEIKSISPIFKK---------SLHIFPIDVANDNRLNLEIAALQTPQY 60 Query: 78 DLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137 ++ RFG SPR +D+++V G + KM L+ +QMP+P ++ + + G Sbjct: 61 NIHRFGIFFCDSPRHADLLLVLGKCSIKMIEPLKETVNQMPQPFGILVIEDENDIGIPVK 120 Query: 138 Y 138 Sbjct: 121 D 121 >gi|297725319|ref|NP_001175023.1| Os07g0116900 [Oryza sativa Japonica Group] gi|255677459|dbj|BAH93751.1| Os07g0116900 [Oryza sativa Japonica Group] Length = 114 Score = 71.1 bits (173), Expect = 6e-11, Method: Composition-based stats. Identities = 31/49 (63%), Positives = 33/49 (67%) Query: 62 LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASAL 110 LA CAVEMM A YD +RF R SPRQSD MI+ GTLTNKM AL Sbjct: 58 LAYCAVEMMHAGASCYDFDRFRVIFRPSPRQSDCMIIVGTLTNKMGPAL 106 >gi|125557036|gb|EAZ02572.1| hypothetical protein OsI_24684 [Oryza sativa Indica Group] gi|125598924|gb|EAZ38500.1| hypothetical protein OsJ_22886 [Oryza sativa Japonica Group] Length = 135 Score = 70.7 bits (172), Expect = 8e-11, Method: Composition-based stats. Identities = 31/49 (63%), Positives = 33/49 (67%) Query: 62 LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASAL 110 LA CAVEMM A YD +RF R SPRQSD MI+ GTLTNKM AL Sbjct: 58 LAYCAVEMMHAGASCYDFDRFRVIFRPSPRQSDCMIIVGTLTNKMGPAL 106 >gi|331664273|ref|ZP_08365179.1| formate hydrogenlyase subunit 7 (FHL subunit 7) (Hydrogenase-3component G) [Escherichia coli TA143] gi|331058204|gb|EGI30185.1| formate hydrogenlyase subunit 7 (FHL subunit 7) (Hydrogenase-3component G) [Escherichia coli TA143] Length = 88 Score = 67.3 bits (163), Expect = 9e-10, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 28/71 (39%), Gaps = 1/71 (1%) Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPR 91 + L R+ + + G C +E+ P +D ERFG SPR Sbjct: 18 TVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPR 77 Query: 92 QSDVMIVAGTL 102 +D+++ G + Sbjct: 78 HADILLFTGAV 88 >gi|332278363|ref|ZP_08390776.1| LOW QUALITY PROTEIN: hydrogenase 4 Fe-S subunit [Shigella sp. D9] gi|332100715|gb|EGJ04061.1| LOW QUALITY PROTEIN: hydrogenase 4 Fe-S subunit [Shigella sp. D9] Length = 149 Score = 64.9 bits (157), Expect = 5e-09, Method: Composition-based stats. Identities = 24/47 (51%), Positives = 31/47 (65%), Gaps = 4/47 (8%) Query: 135 YYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKKI 177 +H YSV G D IVP+D+++PGCPPT A I+G LLQ+KI Sbjct: 14 IFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHGFAVALGLLQQKI 60 >gi|300951809|ref|ZP_07165623.1| conserved domain protein [Escherichia coli MS 116-1] gi|300448972|gb|EFK12592.1| conserved domain protein [Escherichia coli MS 116-1] Length = 136 Score = 64.6 bits (156), Expect = 5e-09, Method: Composition-based stats. Identities = 24/47 (51%), Positives = 31/47 (65%), Gaps = 4/47 (8%) Query: 135 YYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKKI 177 +H YSV G D IVP+D+++PGCPPT A I+G LLQ+KI Sbjct: 1 IFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHGFAVALGLLQQKI 47 >gi|323159342|gb|EFZ45327.1| hydrogenase-4 component I [Escherichia coli E128010] Length = 142 Score = 64.6 bits (156), Expect = 6e-09, Method: Composition-based stats. Identities = 24/47 (51%), Positives = 31/47 (65%), Gaps = 4/47 (8%) Query: 135 YYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKKI 177 +H YSV G D IVP+D+++PGCPPT A I+G LLQ+KI Sbjct: 7 IFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHGFAVALGLLQQKI 53 >gi|300820846|ref|ZP_07100996.1| conserved domain protein [Escherichia coli MS 119-7] gi|300526599|gb|EFK47668.1| conserved domain protein [Escherichia coli MS 119-7] Length = 142 Score = 64.6 bits (156), Expect = 7e-09, Method: Composition-based stats. Identities = 24/47 (51%), Positives = 31/47 (65%), Gaps = 4/47 (8%) Query: 135 YYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKKI 177 +H YSV G D IVP+D+++PGCPPT A I+G LLQ+KI Sbjct: 7 IFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHGFAVALGLLQQKI 53 >gi|261403395|ref|YP_003247619.1| coenzyme F420 hydrogenase, subunit gamma [Methanocaldococcus vulcanius M7] gi|261370388|gb|ACX73137.1| coenzyme F420 hydrogenase, subunit gamma [Methanocaldococcus vulcanius M7] Length = 227 Score = 63.8 bits (154), Expect = 9e-09, Method: Composition-based stats. Identities = 23/88 (26%), Positives = 44/88 (50%), Gaps = 9/88 (10%) Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS---------YSV 142 + D+ +V G++ +L + + + V+++G+CA GG YS +S Sbjct: 49 ECDIALVEGSVCLDDHHSLEVAQEVRKKAKIVVALGACAATGGVTRYSKGNQLSKPVHSS 108 Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGI 170 ++ VD+ +PGCPP+ EA++ I Sbjct: 109 FSPLTEVIKVDLAIPGCPPSPEAIVDVI 136 >gi|297619116|ref|YP_003707221.1| coenzyme F420 hydrogenase subunit gamma [Methanococcus voltae A3] gi|297378093|gb|ADI36248.1| coenzyme F420 hydrogenase, subunit gamma [Methanococcus voltae A3] Length = 242 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 22/95 (23%), Positives = 44/95 (46%), Gaps = 9/95 (9%) Query: 85 APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY------ 138 R P D+ +V G++ A+ + + V+++G+CA GG + Sbjct: 57 IERKIPENIDIALVEGSVCLDDHHAMDDILTTRKNSKIVVALGACAASGGVTRFARGGQM 116 Query: 139 ---SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGI 170 S++ ++ VD+ +PGCPP+ E+++ I Sbjct: 117 SQPSHASFAPIGDVIKVDLALPGCPPSPESIVNLI 151 >gi|294645801|ref|ZP_06723484.1| conserved domain protein [Bacteroides ovatus SD CC 2a] gi|292638814|gb|EFF57149.1| conserved domain protein [Bacteroides ovatus SD CC 2a] Length = 71 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 24/53 (45%), Gaps = 2/53 (3%) Query: 22 VDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQA 72 + ++ E+ G + +D + W R+ SL +TF +CC +E M Sbjct: 19 DNESLEKLVKELNAGGANVALGVLDDFINWGRSNSLWPLTFATSCCGIEFMAL 71 >gi|73667997|ref|YP_304012.1| coenzyme F420-reducing hydrogenase subunit gamma [Methanosarcina barkeri str. Fusaro] gi|72395159|gb|AAZ69432.1| coenzyme F420-reducing hydrogenase, gamma subunit [Methanosarcina barkeri str. Fusaro] Length = 293 Score = 62.6 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 43/90 (47%), Gaps = 10/90 (11%) Query: 86 PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS------ 139 R P DV +V G++ + ++ + + + + V+++GSCA G +S Sbjct: 82 VRHIPE-MDVALVEGSVCLQDHESVEDIKETRKKSKIVVALGSCACYGNITRFSRGGQHN 140 Query: 140 ---YSVVRGCDRIVPVDIYVPGCPPTAEAL 166 + ++ VD+Y+PGCPP+ E + Sbjct: 141 QPQHESYLPIGDLIDVDVYIPGCPPSPELI 170 >gi|134045688|ref|YP_001097174.1| coenzyme F420-reducing hydrogenase subunit gamma [Methanococcus maripaludis C5] gi|132663313|gb|ABO34959.1| coenzyme F420-reducing hydrogenase, gamma subunit [Methanococcus maripaludis C5] Length = 242 Score = 62.2 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 21/96 (21%), Positives = 45/96 (46%), Gaps = 9/96 (9%) Query: 85 APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY------ 138 R P D+ +V G++ ++ + + V+++G+CA GG + Sbjct: 57 IERKIPEDIDIALVEGSVCLDDHHSVEDILTTRKNSKIVVALGACAASGGVTRFGRGNQM 116 Query: 139 ---SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171 S++ ++ VD+ +PGCPP+ E+++ I+ Sbjct: 117 PQPSHASFVPIGDVIKVDLALPGCPPSPESIVNLIM 152 >gi|85682156|sp|P80491|FRHG_METBF RecName: Full=Coenzyme F420 hydrogenase subunit gamma; AltName: Full=8-hydroxy-5-deazaflavin-reducing hydrogenase subunit gamma; Short=FRH gi|2463281|emb|CAA74092.1| F420-reducing hydrogenase isoenzyme II gamma subunit [Methanosarcina barkeri] Length = 259 Score = 62.2 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 43/90 (47%), Gaps = 10/90 (11%) Query: 86 PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS------ 139 R P DV +V G++ + ++ + + + + V+++GSCA G +S Sbjct: 48 VRHIPE-MDVALVEGSVCLQDHESVEDIKETRKKSKIVVALGSCACYGNITRFSRGGQHN 106 Query: 140 ---YSVVRGCDRIVPVDIYVPGCPPTAEAL 166 + ++ VD+Y+PGCPP+ E + Sbjct: 107 QPQHESYLPIGDLIDVDVYIPGCPPSPELI 136 >gi|19698436|gb|AAL93146.1| NADH-ubiquinone oxidoreductase [Lupinus luteus] Length = 94 Score = 61.9 bits (149), Expect = 4e-08, Method: Composition-based stats. Identities = 22/33 (66%), Positives = 27/33 (81%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMM 70 F+++ VD L+ WAR GS+ MTFGLACCAVEMM Sbjct: 62 FVISKVDDLMNWARRGSIWPMTFGLACCAVEMM 94 >gi|19698434|gb|AAL93145.1| NADH-ubiquinone oxidoreductase [Lupinus luteus] Length = 92 Score = 61.9 bits (149), Expect = 4e-08, Method: Composition-based stats. Identities = 22/33 (66%), Positives = 27/33 (81%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMM 70 F+++ VD L+ WAR GS+ MTFGLACCAVEMM Sbjct: 60 FVISKVDDLMNWARRGSIWPMTFGLACCAVEMM 92 >gi|15668201|ref|NP_246994.1| coenzyme F420-reducing hydrogenase subunit gamma [Methanocaldococcus jannaschii DSM 2661] gi|2494431|sp|Q60340|FRHG_METJA RecName: Full=Coenzyme F420 hydrogenase subunit gamma; AltName: Full=8-hydroxy-5-deazaflavin-reducing hydrogenase subunit gamma; Short=FRH gi|1590833|gb|AAB98010.1| coenzyme F420-reducing hydrogenase, gamma subunit [Methanocaldococcus jannaschii DSM 2661] Length = 230 Score = 61.1 bits (147), Expect = 7e-08, Method: Composition-based stats. Identities = 21/85 (24%), Positives = 42/85 (49%), Gaps = 9/85 (10%) Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS---------YSV 142 + D+ +V G++ +L + + + V+++G+CA GG Y +S Sbjct: 52 ECDIALVEGSVCLDDHHSLEVAQEVRKKAKIVVALGACAATGGVTRYCKGNQLSKPVHSS 111 Query: 143 VRGCDRIVPVDIYVPGCPPTAEALI 167 ++ VD+ +PGCPP+ EA++ Sbjct: 112 FSPLTEVIKVDLAIPGCPPSPEAIV 136 >gi|256811180|ref|YP_003128549.1| coenzyme F420 hydrogenase, subunit gamma [Methanocaldococcus fervens AG86] gi|256794380|gb|ACV25049.1| coenzyme F420 hydrogenase, subunit gamma [Methanocaldococcus fervens AG86] Length = 227 Score = 61.1 bits (147), Expect = 7e-08, Method: Composition-based stats. Identities = 22/88 (25%), Positives = 43/88 (48%), Gaps = 9/88 (10%) Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS---------YSV 142 + D+ +V G++ +L + + + V+++G+CA GG Y +S Sbjct: 49 ECDIALVEGSVCLDDHHSLEVAEEVRKKAKIVVALGACAATGGVTRYCKGNQMSKPVHSS 108 Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGI 170 ++ VD+ +PGCPP+ EA++ I Sbjct: 109 FSPLTEVIKVDLAIPGCPPSPEAIVSVI 136 >gi|289192424|ref|YP_003458365.1| coenzyme F420 hydrogenase, subunit gamma [Methanocaldococcus sp. FS406-22] gi|288938874|gb|ADC69629.1| coenzyme F420 hydrogenase, subunit gamma [Methanocaldococcus sp. FS406-22] Length = 227 Score = 61.1 bits (147), Expect = 7e-08, Method: Composition-based stats. Identities = 21/85 (24%), Positives = 42/85 (49%), Gaps = 9/85 (10%) Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS---------YSV 142 + D+ +V G++ +L + + + V+++G+CA GG Y +S Sbjct: 49 ECDIALVEGSVCLDDHHSLEVAQEVRKKAKIVVALGACAATGGVTRYCKGNQLSKPVHSS 108 Query: 143 VRGCDRIVPVDIYVPGCPPTAEALI 167 ++ VD+ +PGCPP+ EA++ Sbjct: 109 FSPLTEVIKVDLAIPGCPPSPEAIV 133 >gi|73669778|ref|YP_305793.1| coenzyme F420-reducing hydrogenase subunit gamma [Methanosarcina barkeri str. Fusaro] gi|72396940|gb|AAZ71213.1| coenzyme F420-reducing hydrogenase, gamma subunit [Methanosarcina barkeri str. Fusaro] Length = 274 Score = 60.7 bits (146), Expect = 9e-08, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 43/90 (47%), Gaps = 10/90 (11%) Query: 86 PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS------ 139 R P DV +V G++ + ++ + + + R V+++GSCA+ G + Sbjct: 63 VRHIPE-MDVALVEGSVCIQDRESVEDIKETRKKSRIVVALGSCASYGNITRFCRGGQHN 121 Query: 140 ---YSVVRGCDRIVPVDIYVPGCPPTAEAL 166 + ++ VD+Y+PGCPP+ E + Sbjct: 122 HPQHESYLPIGDLIDVDVYIPGCPPSPELI 151 >gi|20089854|ref|NP_615929.1| coenzyme F420 hydrogenase, subunit gamma [Methanosarcina acetivorans C2A] gi|19914803|gb|AAM04409.1| coenzyme F420 hydrogenase, subunit gamma [Methanosarcina acetivorans C2A] Length = 262 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 22/92 (23%), Positives = 42/92 (45%), Gaps = 10/92 (10%) Query: 84 FAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS---- 139 R P DV +V G++ + ++ + + + R V+++GSCA G + Sbjct: 55 VDVRHIPE-MDVALVEGSVCIQDRESVEDIKETRKKSRIVVALGSCATYGNITRFCRGGQ 113 Query: 140 -----YSVVRGCDRIVPVDIYVPGCPPTAEAL 166 + ++ VD+Y+PGCPP+ E + Sbjct: 114 HNQPQHESFLPIGDLIDVDVYIPGCPPSPELI 145 >gi|2463276|emb|CAA74096.1| F420-reducing hydrogenase isoenzyme I gamma subunit [Methanosarcina barkeri] Length = 259 Score = 60.3 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 43/90 (47%), Gaps = 10/90 (11%) Query: 86 PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS------ 139 R P DV +V G++ + ++ + + + R V+++GSCA+ G + Sbjct: 48 VRHIPE-MDVALVEGSVCIQDRESVEDIKETRKKSRIVVALGSCASYGNITRFCRGGQHN 106 Query: 140 ---YSVVRGCDRIVPVDIYVPGCPPTAEAL 166 + ++ VD+Y+PGCPP+ E + Sbjct: 107 HPQHESYLPIGDLIDVDVYIPGCPPSPELI 136 >gi|291080839|ref|ZP_06536433.2| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 39 Score = 59.9 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 13/39 (33%), Positives = 21/39 (53%) Query: 40 VTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78 + + +V W R S+ FGL+CC VEM+ + +D Sbjct: 1 MGKLHDMVNWGRKNSIWPYNFGLSCCYVEMVTSFTAVHD 39 >gi|156742696|ref|YP_001432825.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Roseiflexus castenholzii DSM 13941] gi|156234024|gb|ABU58807.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Roseiflexus castenholzii DSM 13941] Length = 125 Score = 59.6 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 31/113 (27%), Positives = 50/113 (44%), Gaps = 10/113 (8%) Query: 59 TFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMP 118 T C +EM+ A D A SP ++DV+++ G LT+ +AL + ++ Sbjct: 13 TGSCGGCDLEMIAAISETAD-----IAWATSPHEADVLLITGPLTHSAKTALVALMQELA 67 Query: 119 EPRYVISMGSCANGGGYYHYSY-SVVRGCDRIVPVDIYVPGCPPTAEALIYGI 170 ++++G CA G + + V G V VD GCPP +I I Sbjct: 68 HQPPLLAIGRCAIDGHPFGRGGLTSVAGLTMQVSVD----GCPPEHARIIESI 116 >gi|296109198|ref|YP_003616147.1| hypothetical protein Metin_0513 [Methanocaldococcus infernus ME] gi|295434012|gb|ADG13183.1| hypothetical protein Metin_0513 [Methanocaldococcus infernus ME] Length = 226 Score = 59.2 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 9/92 (9%) Query: 91 RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSY---------S 141 ++ DV +V G++ + AL + + + V+++G+CA GG Y S Sbjct: 48 KECDVALVEGSVCLEDHHALEVAKEVREKAKIVVALGACAAFGGLTRYCKGNQLPKPVNS 107 Query: 142 VVRGCDRIVPVDIYVPGCPPTAEALIYGILLL 173 ++ VD +PGCPP+ EA+ I L Sbjct: 108 SFSPLTEVIKVDYSIPGCPPSPEAIYSFIKAL 139 >gi|21229145|ref|NP_635067.1| coenzyme F420 hydrogenase subunit gamma [Methanosarcina mazei Go1] gi|20907707|gb|AAM32739.1| Coenzyme F420 hydrogenase, gamma subunit [Methanosarcina mazei Go1] Length = 287 Score = 59.2 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 20/82 (24%), Positives = 41/82 (50%), Gaps = 9/82 (10%) Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS---------YSVVR 144 DV +V G++ + ++ + + + + V+++GSCA G +S + Sbjct: 89 DVALVEGSVCIQDHESVEEIRETREKAKIVVALGSCACYGNITRFSRGGQHNQPQHESFL 148 Query: 145 GCDRIVPVDIYVPGCPPTAEAL 166 ++ VD+Y+PGCPP+ E + Sbjct: 149 PIGDLIDVDVYIPGCPPSPELI 170 >gi|333001061|gb|EGK20631.1| formate hydrogenlyase subunit 7 [Shigella flexneri K-272] Length = 128 Score = 58.8 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 21/43 (48%), Positives = 28/43 (65%), Gaps = 4/43 (9%) Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILL----LQKKIRRVG 181 G D+IVPVD+Y+PGCPPT A +YG + L++KI G Sbjct: 2 WGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARG 44 >gi|303243618|ref|ZP_07329960.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanothermococcus okinawensis IH1] gi|302486179|gb|EFL49101.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanothermococcus okinawensis IH1] Length = 145 Score = 58.0 bits (139), Expect = 6e-07, Method: Composition-based stats. Identities = 20/95 (21%), Positives = 45/95 (47%), Gaps = 10/95 (10%) Query: 86 PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS------ 139 R P +D++++ G++ A+ + + + ++++G+CA GG +S Sbjct: 44 VREIPE-ADIVLLEGSVCLDDHHAMEVAQEARKKGKILVALGACAATGGVTRFSRGGQMS 102 Query: 140 ---YSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171 + +V D+ +PGCPP+ E ++ +L Sbjct: 103 KPVHGSFSPLTEVVKCDLAIPGCPPSPEIIVNVVL 137 >gi|45358381|ref|NP_987938.1| coenzyme F420-reducing hydrogenase subunit gamma [Methanococcus maripaludis S2] gi|44921139|emb|CAF30374.1| coenzyme F420-reducing hydrogenase subunit gamma [Methanococcus maripaludis S2] Length = 242 Score = 58.0 bits (139), Expect = 6e-07, Method: Composition-based stats. Identities = 22/96 (22%), Positives = 45/96 (46%), Gaps = 9/96 (9%) Query: 85 APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY------ 138 R P D+ +V G++ ++ + + V+++G+CA GG + Sbjct: 57 IERKIPENIDIALVEGSVCLDDHHSVEDILTTRKNSKIVVALGACAASGGVTRFGRGGQM 116 Query: 139 ---SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171 S+S ++ VD+ +PGCPP+ E+++ I+ Sbjct: 117 SQPSHSSFVPIGDVIKVDLALPGCPPSTESIVNLIM 152 >gi|150398834|ref|YP_001322601.1| coenzyme F420 hydrogenase [Methanococcus vannielii SB] gi|150011537|gb|ABR53989.1| Coenzyme F420 hydrogenase [Methanococcus vannielii SB] Length = 242 Score = 57.2 bits (137), Expect = 9e-07, Method: Composition-based stats. Identities = 23/96 (23%), Positives = 45/96 (46%), Gaps = 9/96 (9%) Query: 85 APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY------ 138 R P D+ +V G++ +L + + V+++G+CA GG + Sbjct: 57 IERKIPENIDIALVEGSVCLDDHHSLDDILTTRKNSKIVVALGACAASGGVTRFARGGQM 116 Query: 139 ---SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171 S+S ++ VD+ +PGCPP+ E+++ I+ Sbjct: 117 SQPSHSAFVPIGDVIKVDLALPGCPPSTESIVNLIM 152 >gi|148656787|ref|YP_001276992.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Roseiflexus sp. RS-1] gi|148568897|gb|ABQ91042.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Roseiflexus sp. RS-1] Length = 127 Score = 57.2 bits (137), Expect = 9e-07, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 50/118 (42%), Gaps = 8/118 (6%) Query: 56 MWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYD 115 + T C +E++ A D+ A+P ++DV+++ G LT A + Sbjct: 6 RFNTGSCGGCDLEVIAALAAAADI-----DWAATPHEADVLLLTGPLTTDTKKAFMALLQ 60 Query: 116 QMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLL 173 ++ +I++G CA G + V + V + + GCPPT ++ I + Sbjct: 61 ELDHRAPIIAVGRCAIDGHPFGRGGVAVIPN---LTVHLSLDGCPPTPTQIVEAIRTI 115 >gi|45358947|ref|NP_988504.1| coenzyme F420-reducing hydrogenase subunit gamma [Methanococcus maripaludis S2] gi|45047813|emb|CAF30940.1| coenzyme F420-reducing hydrogenase subunit gamma [Methanococcus maripaludis S2] Length = 228 Score = 57.2 bits (137), Expect = 9e-07, Method: Composition-based stats. Identities = 19/95 (20%), Positives = 44/95 (46%), Gaps = 9/95 (9%) Query: 86 PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS------ 139 R P D++++ G++ A+ + + + ++++G+CA G +S Sbjct: 44 VREIPDDVDIVLLEGSVCLSDHHAMEVALESRKKGKILVALGACAASGNITRFSKGNQPS 103 Query: 140 ---YSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171 + +V D+ +PGCPP+ E+++ +L Sbjct: 104 KPVHDSFAPLTEVVKCDLAIPGCPPSPESIVAVVL 138 >gi|147919453|ref|YP_686807.1| coenzyme F420-reducing hydrogenase, gamma subunit [uncultured methanogenic archaeon RC-I] gi|110622203|emb|CAJ37481.1| coenzyme F420-reducing hydrogenase, gamma subunit [uncultured methanogenic archaeon RC-I] Length = 233 Score = 57.2 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 19/82 (23%), Positives = 39/82 (47%), Gaps = 9/82 (10%) Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS---------YSVVR 144 D+ IV G++ + ++ + + + V+++G CA G ++ + Sbjct: 55 DISIVEGSVCLQDEHSVHLIKEAREKSGLVVALGGCAATGCVCNFCRGGQANQPQHESFV 114 Query: 145 GCDRIVPVDIYVPGCPPTAEAL 166 +++V VD Y+PGCPP E + Sbjct: 115 PINKLVKVDAYIPGCPPAPEVI 136 >gi|150401467|ref|YP_001325233.1| coenzyme F420 hydrogenase [Methanococcus aeolicus Nankai-3] gi|150014170|gb|ABR56621.1| Coenzyme F420 hydrogenase [Methanococcus aeolicus Nankai-3] Length = 227 Score = 56.9 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 21/89 (23%), Positives = 45/89 (50%), Gaps = 10/89 (11%) Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS---------YSV 142 ++D+++V G++ A+ D + + ++++G+CA GG + +S Sbjct: 49 EADIILVEGSVCLDDHHAMEIAQDVGKKAKILVALGACAATGGITRFCRGGQMSKPIHSS 108 Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGIL 171 +V D+ +PGCPP+ E +I G++ Sbjct: 109 FSPITEVVKCDLAIPGCPPSPE-IIVGLI 136 >gi|84490092|ref|YP_448324.1| FrhG [Methanosphaera stadtmanae DSM 3091] gi|84373411|gb|ABC57681.1| FrhG [Methanosphaera stadtmanae DSM 3091] Length = 256 Score = 56.9 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 24/88 (27%), Positives = 46/88 (52%), Gaps = 10/88 (11%) Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGG--YYHYSYSVVRG------ 145 D++++ G++ + +L+ + + + + ++++GSCA GG Y + Sbjct: 78 DLVLIEGSVCLEDKHSLKELKEARSKSKLLVALGSCAATGGFTVYAKGGQQAQPQHSSFL 137 Query: 146 -CDRIVPVDIYVPGCPPTAEALIYGILL 172 IV VD+ VPGCPP+ + +I ILL Sbjct: 138 ALQNIVKVDLAVPGCPPSPD-IIKKILL 164 >gi|150399445|ref|YP_001323212.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanococcus vannielii SB] gi|150012148|gb|ABR54600.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanococcus vannielii SB] Length = 228 Score = 56.9 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 20/95 (21%), Positives = 42/95 (44%), Gaps = 9/95 (9%) Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS---------Y 140 P D++++ G++ AL + + + ++++G+CA G + + Sbjct: 48 PDNVDIILLEGSVCLSDHHALEVALESRKKAKILVALGACAASGNITRFCKGNQMSKPIH 107 Query: 141 SVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175 +V D+ +PGCPP+ EA++ I K Sbjct: 108 DSFAPLTEVVKCDLAIPGCPPSPEAIVAVIEAALK 142 >gi|282165081|ref|YP_003357466.1| coenzyme F420 hydrogenase subunit gamma [Methanocella paludicola SANAE] gi|282157395|dbj|BAI62483.1| coenzyme F420 hydrogenase subunit gamma [Methanocella paludicola SANAE] Length = 232 Score = 56.9 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 19/82 (23%), Positives = 38/82 (46%), Gaps = 9/82 (10%) Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS---------YSVVR 144 D+ IV G + + ++ + + + V++ G C+ G ++S + Sbjct: 55 DIAIVEGGVCLQDEESVHLIKETREKAGLVVAYGGCSATGNVLNFSRGGQWNQPQHESFV 114 Query: 145 GCDRIVPVDIYVPGCPPTAEAL 166 +R++ VD Y+PGCPP E + Sbjct: 115 PINRLIKVDAYIPGCPPAPEVI 136 >gi|150402553|ref|YP_001329847.1| coenzyme F420 hydrogenase [Methanococcus maripaludis C7] gi|159905672|ref|YP_001549334.1| coenzyme F420 hydrogenase subunit gamma [Methanococcus maripaludis C6] gi|150033583|gb|ABR65696.1| Coenzyme F420 hydrogenase [Methanococcus maripaludis C7] gi|159887165|gb|ABX02102.1| coenzyme F420 hydrogenase, subunit gamma [Methanococcus maripaludis C6] Length = 228 Score = 56.9 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 20/95 (21%), Positives = 44/95 (46%), Gaps = 9/95 (9%) Query: 86 PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS------ 139 R P D++++ G++ A+ D + + ++++G+CA G +S Sbjct: 44 VREVPDDVDIILLEGSVCLSDHHAMEVALDSRKKAKILVALGACAATGNVTRFSKGNQPS 103 Query: 140 ---YSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171 + +V D+ +PGCPP+ E+++ +L Sbjct: 104 KPVHDAFAPLTEVVKCDLAIPGCPPSPESIVAVVL 138 >gi|134045239|ref|YP_001096725.1| coenzyme F420-reducing hydrogenase subunit gamma [Methanococcus maripaludis C5] gi|132662864|gb|ABO34510.1| coenzyme F420-reducing hydrogenase, gamma subunit [Methanococcus maripaludis C5] Length = 228 Score = 56.9 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 20/95 (21%), Positives = 44/95 (46%), Gaps = 9/95 (9%) Query: 86 PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS------ 139 R P D++++ G++ A+ D + + ++++G+CA G +S Sbjct: 44 VREVPDDVDIILLEGSVCLSDHHAMEVALDSRKKAKILVALGACAATGNVTRFSKGNQPS 103 Query: 140 ---YSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171 + +V D+ +PGCPP+ E+++ +L Sbjct: 104 KPVHDAFAPLTEVVKCDLAIPGCPPSPESIVAVVL 138 >gi|15679300|ref|NP_276417.1| coenzyme F420-reducing hydrogenase, gamma subunit [Methanothermobacter thermautotrophicus str. Delta H] gi|2622405|gb|AAB85778.1| coenzyme F420-reducing hydrogenase, gamma subunit [Methanothermobacter thermautotrophicus str. Delta H] Length = 275 Score = 56.1 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 21/89 (23%), Positives = 42/89 (47%), Gaps = 9/89 (10%) Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS---------YSVVR 144 D+ +V G++ + +L + + + + V + GSCA G + YS + Sbjct: 97 DLALVEGSVCLQDEHSLHELKELREKAKLVCAFGSCAATGCFTRYSRGGQQAQPSHESFV 156 Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILLL 173 ++ VD+ +PGCPP+ E + ++ L Sbjct: 157 PIADLIDVDLAIPGCPPSPEIIAKAVVAL 185 >gi|3334464|sp|P19498|FRHG_METTH RecName: Full=Coenzyme F420 hydrogenase subunit gamma; AltName: Full=8-hydroxy-5-deazaflavin-reducing hydrogenase subunit gamma; Short=FRH Length = 236 Score = 56.1 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 21/89 (23%), Positives = 42/89 (47%), Gaps = 9/89 (10%) Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS---------YSVVR 144 D+ +V G++ + +L + + + + V + GSCA G + YS + Sbjct: 58 DLALVEGSVCLQDEHSLHELKELREKAKLVCAFGSCAATGCFTRYSRGGQQAQPSHESFV 117 Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILLL 173 ++ VD+ +PGCPP+ E + ++ L Sbjct: 118 PIADLIDVDLAIPGCPPSPEIIAKAVVAL 146 >gi|149717|gb|AAA72189.1| F420 hydrogenase gamma-subuint (frhG) [Methanothermobacter thermautotrophicus] Length = 236 Score = 55.7 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 21/89 (23%), Positives = 42/89 (47%), Gaps = 9/89 (10%) Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS---------YSVVR 144 D+ +V G++ + +L + + + + V + GSCA G + YS + Sbjct: 58 DLALVEGSVCLQDEHSLHELKELREKAKLVCAFGSCAQTGCFTRYSRGGQQAQPSHESFV 117 Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILLL 173 ++ VD+ +PGCPP+ E + ++ L Sbjct: 118 PIADLIDVDLAIPGCPPSPEIIAKAVVAL 146 >gi|244280|gb|AAB21279.1| NADH:ubiquinone oxidoreductase (complex I) iron-sulfur protein fraction 20 kda polypeptide peptides T-4/T-7 [cattle, heart, Peptide Mitochondrial Partial, 33 aa] Length = 33 Score = 55.3 bits (132), Expect = 4e-06, Method: Composition-based stats. Identities = 31/33 (93%), Positives = 33/33 (100%) Query: 112 RVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR 144 +VYDQMPEPRYV+SMGSCANGGGYYHYSYSVVR Sbjct: 1 KVYDQMPEPRYVVSMGSCANGGGYYHYSYSVVR 33 >gi|325957978|ref|YP_004289444.1| coenzyme F420 hydrogenase subunit gamma [Methanobacterium sp. AL-21] gi|325329410|gb|ADZ08472.1| coenzyme F420 hydrogenase, subunit gamma [Methanobacterium sp. AL-21] Length = 261 Score = 54.5 bits (130), Expect = 6e-06, Method: Composition-based stats. Identities = 20/82 (24%), Positives = 40/82 (48%), Gaps = 9/82 (10%) Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS---------YSVVR 144 D+++V G++ + +++ + + + V++ GSCA G + YS + Sbjct: 83 DLVLVEGSVCLQDEHSVKELKEAREKAGLVVAFGSCAATGCFTRYSRGGQQARPDHESFV 142 Query: 145 GCDRIVPVDIYVPGCPPTAEAL 166 +V VD +PGCPP+ E + Sbjct: 143 PIADLVKVDCAIPGCPPSPEII 164 >gi|219850771|ref|YP_002465203.1| coenzyme F420 hydrogenase, subunit gamma [Methanosphaerula palustris E1-9c] gi|219545030|gb|ACL15480.1| coenzyme F420 hydrogenase, subunit gamma [Methanosphaerula palustris E1-9c] Length = 253 Score = 54.5 bits (130), Expect = 6e-06, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 41/90 (45%), Gaps = 10/90 (11%) Query: 86 PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS------ 139 R P DV +V G++ + +A+ + + + V+++G CA G +S Sbjct: 48 VRHIPE-MDVALVEGSVCLQDKTAVEEIKETRERAKIVVALGGCACYGNITRFSRGGQQN 106 Query: 140 ---YSVVRGCDRIVPVDIYVPGCPPTAEAL 166 + ++ VD+Y+PGC PT + + Sbjct: 107 QPQHESYLPIGDLIDVDVYIPGCAPTPQMI 136 >gi|29565659|ref|NP_817241.1| NADH dehydrogenase subunit K [Pinus koraiensis] gi|29469758|gb|AAO74086.1| ORF82a [Pinus koraiensis] Length = 82 Score = 54.2 bits (129), Expect = 8e-06, Method: Composition-based stats. Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 7/55 (12%) Query: 129 CANGGGYYH-------YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKK 176 C+ G Y+ SYS V D+++PVD+Y P CP E +I I L+++ Sbjct: 21 CSCPGSMYYHIEMFGTDSYSTVHEVDKLIPVDVYSPDCPTEPEVIIDAITKLRER 75 >gi|297619514|ref|YP_003707619.1| coenzyme F420 hydrogenase subunit gamma [Methanococcus voltae A3] gi|297378491|gb|ADI36646.1| coenzyme F420 hydrogenase, subunit gamma [Methanococcus voltae A3] Length = 228 Score = 54.2 bits (129), Expect = 9e-06, Method: Composition-based stats. Identities = 19/91 (20%), Positives = 40/91 (43%), Gaps = 9/91 (9%) Query: 86 PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS------ 139 R P D++++ G++ AL + + ++++G+CA G +S Sbjct: 44 VREVPDDVDIILLEGSVCINDHHALETALACRKKAKILVALGACAASGNITRFSRGGQMS 103 Query: 140 ---YSVVRGCDRIVPVDIYVPGCPPTAEALI 167 + +V D+ +PGCPP+ E ++ Sbjct: 104 KPVHDAFAPLTEVVKCDLAIPGCPPSPEIIV 134 >gi|312137254|ref|YP_004004591.1| coenzyme f420-reducing hydrogenase, gamma subunit [Methanothermus fervidus DSM 2088] gi|311224973|gb|ADP77829.1| coenzyme F420-reducing hydrogenase, gamma subunit [Methanothermus fervidus DSM 2088] Length = 254 Score = 53.4 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 20/82 (24%), Positives = 40/82 (48%), Gaps = 9/82 (10%) Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY---------SYSVVR 144 D+ +V G++ + ++ + + + + ++GSCA GG+ Y S+ Sbjct: 76 DLALVEGSVCIQDEHSVEELMEAREKADLLCALGSCAMTGGFTRYARGGQQAQPSHESFL 135 Query: 145 GCDRIVPVDIYVPGCPPTAEAL 166 +V VD+ +PGCPP+ E + Sbjct: 136 PISELVKVDLAIPGCPPSPEII 157 >gi|207094125|ref|ZP_03241912.1| NADH dehydrogenase subunit B [Helicobacter pylori HPKX_438_AG0C1] Length = 35 Score = 53.4 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 20/35 (57%), Positives = 28/35 (80%) Query: 140 YSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQ 174 Y+ V+G DR+VPVDIY+PGC P +E L Y +++LQ Sbjct: 1 YATVQGADRVVPVDIYLPGCAPRSETLQYALMVLQ 35 >gi|218782785|ref|YP_002434103.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfatibacillum alkenivorans AK-01] gi|218764169|gb|ACL06635.1| F420-non-reducing hydrogenase, iron-sulfur subunit, MvhG [Desulfatibacillum alkenivorans AK-01] Length = 312 Score = 53.0 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 26/143 (18%), Positives = 51/143 (35%), Gaps = 37/143 (25%) Query: 66 AVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL-TNKMASALRRVYDQMPEPRYVI 124 V + +Y + G Q+DV I++G + + + + ++ ++I Sbjct: 36 FVHIPALMDSKY-FGQLGDGKHLDIPQADVGIISGGIRNEEHLEVAKVMRERC---GFII 91 Query: 125 SMGSCANGGG------------YYHYSYSV--------------------VRGCDRIVPV 152 ++G+CA GG + Y D+ + V Sbjct: 92 ALGTCATHGGIPSLANSYTPEQIFERYYHTETTDPADFVPNQGLPALLESCDAVDQHIKV 151 Query: 153 DIYVPGCPPTAEALIYGILLLQK 175 D+ VPGCPP + + ++ L K Sbjct: 152 DLLVPGCPPHPDHIFSALVALVK 174 >gi|44707|emb|CAA43502.1| F420-reducing hydrogenase subunit [Methanococcus voltae PS] Length = 228 Score = 53.0 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 19/91 (20%), Positives = 41/91 (45%), Gaps = 9/91 (9%) Query: 86 PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS------ 139 R P D++++ G++ AL + + ++++G+CA G +S Sbjct: 44 VREVPDDVDIILLEGSVCLSDHHALETALACREKAKILVALGACAASGNITRFSRGGQMS 103 Query: 140 ---YSVVRGCDRIVPVDIYVPGCPPTAEALI 167 + +V D+ +PGCPP+ E+++ Sbjct: 104 KPVHDAFAPLTEVVKCDLAIPGCPPSPESIV 134 >gi|289192300|ref|YP_003458241.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanocaldococcus sp. FS406-22] gi|288938750|gb|ADC69505.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanocaldococcus sp. FS406-22] Length = 285 Score = 52.6 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 47/119 (39%), Gaps = 34/119 (28%) Query: 89 SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY------------Y 136 P DV +V G + N+ L +++ + + VI+ G+CA GG Sbjct: 48 IPEGIDVFLVEGGIRNEHDEHL--IHEIREKSKIVIAWGTCAAYGGIPGLGNLYTKEELL 105 Query: 137 HYSYSV--------------------VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175 +Y YS V+ +V VD +PGCPPT E + I+ L K Sbjct: 106 NYVYSTDSTDNKGEIPSEDIPPLEDYVKPISAVVKVDYVIPGCPPTPEMIADAIVALLK 164 >gi|240102125|ref|YP_002958433.1| Coenzyme F420 hydrogenase subunit gamma (frhG) [Thermococcus gammatolerans EJ3] gi|239909678|gb|ACS32569.1| Coenzyme F420 hydrogenase subunit gamma (frhG) [Thermococcus gammatolerans EJ3] Length = 229 Score = 52.2 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 9/82 (10%) Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY--YHYSYS-------VVR 144 DV ++ G L + + + R V++ GSCA+ GG + + Sbjct: 53 DVALITGGACMNEPRILEELKEIREKARVVVAFGSCASLGGILRFARGGQEPRPDHRNFQ 112 Query: 145 GCDRIVPVDIYVPGCPPTAEAL 166 + ++PVD +PGCPPT + L Sbjct: 113 PINSVIPVDYSIPGCPPTPQML 134 >gi|304315421|ref|YP_003850568.1| F420-reducing hydrogenase, subunit gamma [Methanothermobacter marburgensis str. Marburg] gi|302588880|gb|ADL59255.1| F420-reducing hydrogenase, subunit gamma [Methanothermobacter marburgensis str. Marburg] Length = 275 Score = 51.8 bits (123), Expect = 4e-05, Method: Composition-based stats. Identities = 21/89 (23%), Positives = 42/89 (47%), Gaps = 9/89 (10%) Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS---------YSVVR 144 D+ +V G++ + +L + + + + V + GSCA G + YS + Sbjct: 97 DLALVEGSVCLQDEHSLHELKELREKAKLVCAFGSCAATGCFTRYSRGGQQAQPSHESFV 156 Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILLL 173 ++ VD+ +PGCPP+ E + ++ L Sbjct: 157 PIADLIDVDLALPGCPPSPEIIAKTVVAL 185 >gi|224368286|ref|YP_002602449.1| MvhG [Desulfobacterium autotrophicum HRM2] gi|223691002|gb|ACN14285.1| MvhG [Desulfobacterium autotrophicum HRM2] Length = 313 Score = 50.7 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 29/162 (17%), Positives = 51/162 (31%), Gaps = 52/162 (32%) Query: 62 LACCAVEMMQASMPRYDL------------------ERFGFAPRASPRQSDVMIVAGTLT 103 + C + ++ DL + G ++ V +V+G + Sbjct: 13 CSGCEIAILNLGETLLDLLPKINFVHIPVLMDHKHLGQLGDKQHIDIPKATVGLVSGGI- 71 Query: 104 NKMASALRRVYDQMPEPRYVISMGSCANGGGY------------YHYSYSV--------- 142 + L + + VI++G+CA GG + Y+ Sbjct: 72 -RNEEHLEVAMEMRKKCDIVIALGTCATHGGIPALINSVTNEELFDRYYATESTDSGAQV 130 Query: 143 -----------VRGCDRIVPVDIYVPGCPPTAEALIYGILLL 173 D + VDIY+PGCPP + + IL L Sbjct: 131 PTKGISPLLDRCYALDEHIKVDIYLPGCPPHPDQIATAILAL 172 >gi|154150020|ref|YP_001403638.1| coenzyme F420 hydrogenase [Candidatus Methanoregula boonei 6A8] gi|153998572|gb|ABS54995.1| Coenzyme F420 hydrogenase [Methanoregula boonei 6A8] Length = 252 Score = 50.3 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 17/82 (20%), Positives = 35/82 (42%), Gaps = 9/82 (10%) Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS---------YSVVR 144 DV V G++ A+ + + + V+++G CA G + + Sbjct: 55 DVSFVEGSVCINDKLAVEEIKETREKSAVVVALGGCACYGNITRFCRGGQQNQPAHEAFL 114 Query: 145 GCDRIVPVDIYVPGCPPTAEAL 166 ++ VD+++PGC PT + + Sbjct: 115 PIGDLIKVDVFIPGCAPTPQMI 136 >gi|261403598|ref|YP_003247822.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanocaldococcus vulcanius M7] gi|261370591|gb|ACX73340.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanocaldococcus vulcanius M7] Length = 288 Score = 49.9 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 47/120 (39%), Gaps = 34/120 (28%) Query: 86 PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY---------- 135 P+ P DV +V G + N+ L +++ + + VI+ G+CA GG Sbjct: 48 PKEIPEGIDVFLVEGGIRNEHDEHL--IHEIREKSKIVIAWGTCAAYGGIPGLGNLYKKE 105 Query: 136 --YHYSYSV--------------------VRGCDRIVPVDIYVPGCPPTAEALIYGILLL 173 +Y YS V+ + VD +PGCPPT + + I+ L Sbjct: 106 ELLNYVYSTDSTENKGEIPSEEIPPLEEYVKPIKDFIKVDYTIPGCPPTPKMIADAIIAL 165 >gi|256810209|ref|YP_003127578.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanocaldococcus fervens AG86] gi|256793409|gb|ACV24078.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanocaldococcus fervens AG86] Length = 288 Score = 49.9 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 46/120 (38%), Gaps = 34/120 (28%) Query: 86 PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY---------- 135 P+ P DV +V G + N+ L +++ + + VI+ GSCA GG Sbjct: 48 PKEIPEGIDVFLVEGGIRNEHDEHL--IHEIREKSKIVIAWGSCAAFGGIPGLANLYTKE 105 Query: 136 --YHYSYSV--------------------VRGCDRIVPVDIYVPGCPPTAEALIYGILLL 173 + YS V+ V VD +PGCPPT E + I+ L Sbjct: 106 EILNTVYSTDSTENKGEIPSEEVPPLEEYVKPISDFVKVDYVIPGCPPTPEMIASAIVAL 165 >gi|15669379|ref|NP_248186.1| methylviologen-reducing hydrogenase subunit VhuG [Methanocaldococcus jannaschii DSM 2661] gi|41018412|sp|Q58591|VHUG_METJA RecName: Full=F420-non-reducing hydrogenase vhu subunit G gi|1591819|gb|AAB99193.1| methylviologen-reducing hydrogenase, gamma chain (vhuG) [Methanocaldococcus jannaschii DSM 2661] Length = 288 Score = 49.9 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 47/120 (39%), Gaps = 34/120 (28%) Query: 86 PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY---------- 135 P+ P DV +V G + N+ L +++ + + VI+ G+CA GG Sbjct: 48 PKEIPEGIDVFLVEGGIRNEHDEHL--IHEIREKSKIVIAWGTCAAYGGIPGLGNLYKKE 105 Query: 136 --YHYSYSV--------------------VRGCDRIVPVDIYVPGCPPTAEALIYGILLL 173 +Y YS V+ + VD +PGCPPT + + I+ L Sbjct: 106 ELLNYVYSTDSTENKGEIPSEEIPPLEEYVKPIKDFIKVDYTIPGCPPTPKMIADAIIAL 165 >gi|298530301|ref|ZP_07017703.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfonatronospira thiodismutans ASO3-1] gi|298509675|gb|EFI33579.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfonatronospira thiodismutans ASO3-1] Length = 312 Score = 49.5 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 30/166 (18%), Positives = 55/166 (33%), Gaps = 53/166 (31%) Query: 61 GLACCAVEMMQASMPRYDL-------------------ERFGFAPRASPRQSDVMIVAGT 101 A C + ++ DL + G S ++ V IV+G Sbjct: 13 ACAGCEIAILNVGDVLVDLLVNNLDFVHIPVILDKKYFGQTGEEEHLSIPEAVVGIVSGG 72 Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGY----------------YHYSYSV--- 142 + + + + + + +I++G+CA GG Y S + Sbjct: 73 V--RNEEHKEVLLEMRKKCQILIALGTCATDGGIPAMINMYSDEELKKFTYKDSPTTDPA 130 Query: 143 -------------VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175 D +V VD+Y+PGCPP + + +L L + Sbjct: 131 DYPTEHIPPLLDQCYALDELVKVDLYLPGCPPHPDWIAGAVLALLE 176 >gi|1706905|sp|Q00393|FRHG_METVO RecName: Full=Coenzyme F420 hydrogenase subunit gamma; AltName: Full=8-hydroxy-5-deazaflavin-reducing hydrogenase subunit gamma; Short=FRH gi|809730|emb|CAA43498.1| F420-reducing hydrogenase subunit [Methanococcus voltae PS] Length = 243 Score = 49.2 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 19/94 (20%), Positives = 43/94 (45%), Gaps = 10/94 (10%) Query: 85 APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE-PRYVISMGSCANGGGYYHY----- 138 R P D+ +V G++ ++ + + ++++G+CA GG + Sbjct: 57 IERDIPGGIDIALVEGSVCLDDHHSMDDILTTRKNSKKSLVALGACAASGGVTRFRRVGQ 116 Query: 139 ----SYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168 S++ ++ VD+ +PGCPP+ E+++ Sbjct: 117 MSQPSHASFVPIGDVIKVDLALPGCPPSTESIVK 150 >gi|307352753|ref|YP_003893804.1| coenzyme F420 hydrogenase subunit gamma [Methanoplanus petrolearius DSM 11571] gi|307155986|gb|ADN35366.1| coenzyme F420 hydrogenase, subunit gamma [Methanoplanus petrolearius DSM 11571] Length = 314 Score = 48.8 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 42/90 (46%), Gaps = 10/90 (11%) Query: 86 PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS------ 139 R P DV +V G++ + ++R + + + + V+++G CA G + Sbjct: 105 VRHIPE-MDVALVEGSVCLQDECSVREIKETREKAKVVVALGGCAAYGNITRFCRGGQWN 163 Query: 140 ---YSVVRGCDRIVPVDIYVPGCPPTAEAL 166 + ++ VD+Y+P CPP AEA+ Sbjct: 164 QPQHESFVPIGDLIDVDVYLPSCPPGAEAI 193 >gi|298506751|gb|ADI85474.1| bidirectional NAD-reducing hydrogenase, small subunit [Geobacter sulfurreducens KN400] Length = 181 Score = 48.8 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 29/111 (26%), Positives = 43/111 (38%), Gaps = 32/111 (28%) Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGG--------------- 134 P DV +V G +TN+ A+ + Q R VIS G CA G Sbjct: 54 PAGVDVALVEGAVTNRANLAMAGIIRQ--RSRTVISFGDCAITGNVTAMRNLLTVAETLD 111 Query: 135 YYH--------YSYSVVR-------GCDRIVPVDIYVPGCPPTAEALIYGI 170 + + Y+ V +++PVD Y+PGCPP + + I Sbjct: 112 PFRCDGEASPAFDYAAVPQLLPRALPLHQVIPVDGYIPGCPPGPDRIRAAI 162 >gi|116750141|ref|YP_846828.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Syntrophobacter fumaroxidans MPOB] gi|116699205|gb|ABK18393.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Syntrophobacter fumaroxidans MPOB] Length = 184 Score = 48.8 bits (115), Expect = 4e-04, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 40/119 (33%), Gaps = 35/119 (29%) Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGG---------------- 133 P DV +V G N + ++ + VI+ G CA G Sbjct: 54 PEGVDVTLVEGACCND--ENVHLAHEVRERSKIVIAFGDCAVTGNVPSMRNRLDRDQMIN 111 Query: 134 GYYHYSY-----------------SVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175 Y V +++PVDI++PGCPP E + I+ L K Sbjct: 112 SVYFEGPGKPPPTSVLGHFLPTLIPKVLPLHQVIPVDIFLPGCPPDPERIWAAIVALLK 170 >gi|39997813|ref|NP_953764.1| NAD-reducing hydrogenase subunit delta [Geobacter sulfurreducens PCA] gi|39984705|gb|AAR36091.1| NAD-reducing hydrogenase, delta subunit [Geobacter sulfurreducens PCA] Length = 195 Score = 48.4 bits (114), Expect = 5e-04, Method: Composition-based stats. Identities = 29/111 (26%), Positives = 43/111 (38%), Gaps = 32/111 (28%) Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGG--------------- 134 P DV +V G +TN+ A+ + Q R VIS G CA G Sbjct: 68 PAGVDVALVEGAVTNRANLAMAGIIRQ--RSRTVISFGDCAITGNVTAMRNLLTVAETLD 125 Query: 135 YYH--------YSYSVVR-------GCDRIVPVDIYVPGCPPTAEALIYGI 170 + + Y+ V +++PVD Y+PGCPP + + I Sbjct: 126 PFRCDGEASPAFDYAAVPQLLPRALPLHQVIPVDGYIPGCPPGPDRIRAAI 176 >gi|320160377|ref|YP_004173601.1| bidirectional hydrogenase Y subunit [Anaerolinea thermophila UNI-1] gi|319994230|dbj|BAJ63001.1| bidirectional hydrogenase Y subunit [Anaerolinea thermophila UNI-1] Length = 180 Score = 48.4 bits (114), Expect = 5e-04, Method: Composition-based stats. Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 1/43 (2%) Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLL-QKKIRRVGNVK 184 VR +VPVD++VPGCPP + + Y + L Q +I + + K Sbjct: 134 VRAVHEVVPVDVFVPGCPPDPDVIFYVLSELAQGRIPELKDEK 176 >gi|124484842|ref|YP_001029458.1| coenzyme F420-reducing hydrogenase, gamma subunit [Methanocorpusculum labreanum Z] gi|124362383|gb|ABN06191.1| coenzyme F420-reducing hydrogenase, gamma subunit [Methanocorpusculum labreanum Z] Length = 303 Score = 47.6 bits (112), Expect = 7e-04, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 37/90 (41%), Gaps = 10/90 (11%) Query: 86 PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY--YHYSYSVV 143 R P+ DV +V G++ ++ + + V+++G CA G + Sbjct: 97 VRHIPK-MDVALVEGSVCINDECSMEEILETRENAAIVVALGGCACYGNTTRFCRGGQQN 155 Query: 144 RG-------CDRIVPVDIYVPGCPPTAEAL 166 + ++ VD+Y+P C PT + + Sbjct: 156 QPQHEGFLPIGDLIKVDVYIPACAPTPQQI 185 >gi|148643182|ref|YP_001273695.1| coenzyme F420-reducing hydrogenase, gamma subunit, FrhG [Methanobrevibacter smithii ATCC 35061] gi|222445413|ref|ZP_03607928.1| hypothetical protein METSMIALI_01049 [Methanobrevibacter smithii DSM 2375] gi|261350025|ref|ZP_05975442.1| coenzyme F420 hydrogenase, subunit gamma [Methanobrevibacter smithii DSM 2374] gi|148552199|gb|ABQ87327.1| coenzyme F420-reducing hydrogenase, gamma subunit, FrhG [Methanobrevibacter smithii ATCC 35061] gi|222434978|gb|EEE42143.1| hypothetical protein METSMIALI_01049 [Methanobrevibacter smithii DSM 2375] gi|288860811|gb|EFC93109.1| coenzyme F420 hydrogenase, subunit gamma [Methanobrevibacter smithii DSM 2374] Length = 276 Score = 47.6 bits (112), Expect = 9e-04, Method: Composition-based stats. Identities = 17/89 (19%), Positives = 38/89 (42%), Gaps = 9/89 (10%) Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY--YHYSYSVVRG------ 145 D+ ++ G++ + ++ + + + + + GSCA G + Y + Sbjct: 98 DLCLIEGSVCLQDEHSVHELLEAREKSALICAFGSCALNGCFTTYARGGQQAQPKHESFL 157 Query: 146 -CDRIVPVDIYVPGCPPTAEALIYGILLL 173 +V VD+ +PGCP E + ++ L Sbjct: 158 PISSLVKVDVALPGCPVAPEMIAKTVVAL 186 >gi|224372616|ref|YP_002606988.1| NADH ubiquinone oxidoreductase, 20 kda subunit [Nautilia profundicola AmH] gi|223588337|gb|ACM92073.1| NADH ubiquinone oxidoreductase, 20 kda subunit [Nautilia profundicola AmH] Length = 288 Score = 47.2 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 38/89 (42%), Gaps = 18/89 (20%) Query: 91 RQSDVMIVAGTLTNKMASALRRVYDQMPEPRY-----VISMGSCANGGGYYHYS------ 139 +Q D++IV G L L +++ + V+++G+CA GG + Sbjct: 51 KQCDLLIVEGAL-KNNYPRLGYSLNELISKLFFKAKKVLALGTCAVYGGMFGEGLMYNKE 109 Query: 140 --YSVVRGCDRIVPVDIYVPGCPPTAEAL 166 + D+I+ +PGCPP + + Sbjct: 110 QKGHYYKCRDKII----NLPGCPPHPDWI 134 >gi|189425848|ref|YP_001953025.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Geobacter lovleyi SZ] gi|189422107|gb|ACD96505.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Geobacter lovleyi SZ] Length = 179 Score = 47.2 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 13/33 (39%), Positives = 19/33 (57%) Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175 V ++V VD Y+PGCPP E ++ + L K Sbjct: 133 VLPLHQVVEVDAYIPGCPPDPERILAALTALLK 165 >gi|212224711|ref|YP_002307947.1| Coenzyme F420 hydrogenase gamma subunit [Thermococcus onnurineus NA1] gi|212009668|gb|ACJ17050.1| Coenzyme F420 hydrogenase gamma subunit [Thermococcus onnurineus NA1] Length = 225 Score = 47.2 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 20/82 (24%), Positives = 34/82 (41%), Gaps = 9/82 (10%) Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS---------YSVVR 144 DV I+ G L + + + V++ GSCA G + + + Sbjct: 50 DVAIITGGACMNEPRILEELKEIREKAHTVVAFGSCATFSGILRFCRGGQEPRPDHRNFQ 109 Query: 145 GCDRIVPVDIYVPGCPPTAEAL 166 + ++ VD +PGCPPT + L Sbjct: 110 PINSVIKVDYSIPGCPPTPQML 131 >gi|288561318|ref|YP_003424804.1| coenzyme F420 hydrogenase gamma subunit FrhG [Methanobrevibacter ruminantium M1] gi|288544028|gb|ADC47912.1| coenzyme F420 hydrogenase gamma subunit FrhG [Methanobrevibacter ruminantium M1] Length = 319 Score = 47.2 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 19/89 (21%), Positives = 40/89 (44%), Gaps = 9/89 (10%) Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY--YHYSYSVVRG------ 145 D+ +V G++ + +++ + + + V + GSCA G + Y + + Sbjct: 141 DLALVEGSVCLQDEHSVKELMEVREKAGLVCAFGSCAMTGCFTRYARGGQLAQPKHESFV 200 Query: 146 -CDRIVPVDIYVPGCPPTAEALIYGILLL 173 +V VD +PGCP + E + ++ L Sbjct: 201 PISDLVKVDCAIPGCPASPEIIAKVVVAL 229 >gi|332702530|ref|ZP_08422618.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfovibrio africanus str. Walvis Bay] gi|332552679|gb|EGJ49723.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfovibrio africanus str. Walvis Bay] Length = 312 Score = 46.8 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 28/113 (24%), Positives = 41/113 (36%), Gaps = 38/113 (33%) Query: 97 IVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY----------------YHYSY 140 IV+G + K + L ++ +I++G+CA GG YH S Sbjct: 65 IVSGGV--KNSEHLEVLHKMRESCDILIALGTCATDGGLPALANMYTNDEIREFSYHDSP 122 Query: 141 SVVRG--------------------CDRIVPVDIYVPGCPPTAEALIYGILLL 173 + V D V VDI +PGCPP E + +L L Sbjct: 123 TTVDKGVRPNPDKFHIPHMLEHCTALDEHVKVDIKIPGCPPHPEWIAGAVLAL 175 >gi|88603575|ref|YP_503753.1| coenzyme F420 hydrogenase [Methanospirillum hungatei JF-1] gi|88189037|gb|ABD42034.1| coenzyme F420-reducing hydrogenase, gamma subunit [Methanospirillum hungatei JF-1] Length = 262 Score = 46.8 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 16/82 (19%), Positives = 36/82 (43%), Gaps = 9/82 (10%) Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS---------YSVVR 144 DV +V G++ + ++ + + + V+++G CA G + + Sbjct: 55 DVALVEGSVCLQDELSVEEIKETREKAAVVVALGGCAAYGNITRFCRGGQWNQPQHEGFV 114 Query: 145 GCDRIVPVDIYVPGCPPTAEAL 166 ++ VD+Y+PGC P + + Sbjct: 115 PIGDVIDVDVYIPGCAPCPQQI 136 >gi|333015434|gb|EGK34773.1| formate hydrogenlyase subunit 7 [Shigella flexneri K-227] Length = 118 Score = 46.8 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 4/33 (12%) Query: 153 DIYVPGCPPTAEALIYGILL----LQKKIRRVG 181 D+Y+PGCPPT A +YG + L++KI G Sbjct: 2 DVYIPGCPPTPAATLYGFAMALGLLEQKIHARG 34 >gi|300087832|ref|YP_003758354.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299527565|gb|ADJ26033.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 305 Score = 46.8 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 27/116 (23%), Positives = 49/116 (42%), Gaps = 36/116 (31%) Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPR-YVISMGSCANGGGY------------YHYS 139 +DV I+ G++ ++ + + ++M +IS+GSCAN GG + + Sbjct: 61 ADVGIITGSIRSQ---ENKELAEEMRRKCKIIISLGSCANFGGIPALGNMYPNSEIFDTA 117 Query: 140 Y--------------------SVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175 Y V + ++ VDI +PGCPPT E + ++ L + Sbjct: 118 YRKTASTEAGDDPNEALPALTDRVYSVNEVIKVDISIPGCPPTPEWIANALVALLE 173 >gi|317052152|ref|YP_004113268.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfurispirillum indicum S5] gi|316947236|gb|ADU66712.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfurispirillum indicum S5] Length = 261 Score = 46.8 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 31/164 (18%), Positives = 52/164 (31%), Gaps = 46/164 (28%) Query: 51 RTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP--------RQSDVMIVAGTL 102 R ++ + G + C + + DL + SP + D+ I G + Sbjct: 87 RLATVWF--GGCSGCHMSFLDLHEKLLDLAQH-VEVVYSPLADTKEFPKGVDITIAEGAI 143 Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGG----------------GYYHYSYSV---- 142 TN L + ++S+G CA G YH Sbjct: 144 TN--VENLELLEQVRQHTTTLVSLGDCAITGNVTSLRNFFPVSDLLNAVYHAGPGTAPHG 201 Query: 143 -------------VRGCDRIVPVDIYVPGCPPTAEALIYGILLL 173 V ++V VD ++PGCPP +A+ + L Sbjct: 202 SEAVKELPALLPKVLPIHQVVKVDGFIPGCPPEPQAIWQAMEAL 245 >gi|158340824|ref|YP_001521992.1| Ni-Fe hydrogenase small subunit [Acaryochloris marina MBIC11017] gi|158311065|gb|ABW32678.1| Ni-Fe hydrogenase small subunit [Acaryochloris marina MBIC11017] Length = 181 Score = 46.8 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 34/165 (20%), Positives = 55/165 (33%), Gaps = 64/165 (38%) Query: 60 FGLACCAV----------EMMQ----ASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNK 105 G + C + E+ P D +++ P++ DV +V G + Sbjct: 12 GGCSGCHMSFLDLDEWLFELAHQVDLVYSPFMDAKQY-------PQEVDVALVEGAI--A 62 Query: 106 MASALRRVYDQMPEPRYVISMGSCANGG-------------GYYHYSYSV---------- 142 ++ +Y+I+ G CA G G SY Sbjct: 63 NTDHWEMIHQVRDCTQYLIAFGDCAVTGNVTALRNLLGTAEGVLERSYINLADLVPQIPA 122 Query: 143 -----------VRGCDRIVPVDIYVPGCPPTA-------EALIYG 169 V+ +VPVD+Y+PGCPP+ EAL+ G Sbjct: 123 EEAIVPPLLDWVKPVHTVVPVDLYLPGCPPSPSRIKFVLEALLQG 167 >gi|125539136|gb|EAY85531.1| hypothetical protein OsI_06904 [Oryza sativa Indica Group] Length = 65 Score = 46.8 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 18/39 (46%), Positives = 23/39 (58%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPR 76 F+++ VD L+ WAR G + MTF L AVEMM R Sbjct: 27 FVISKVDDLMNWARRGLMWPMTFRLTYYAVEMMHKGASR 65 >gi|254173024|ref|ZP_04879698.1| hydrogenase (cytochrome-c3 hydrogenase delta chain) [Thermococcus sp. AM4] gi|214033180|gb|EEB74008.1| hydrogenase (cytochrome-c3 hydrogenase delta chain) [Thermococcus sp. AM4] Length = 241 Score = 46.5 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 32/123 (26%), Positives = 51/123 (41%), Gaps = 24/123 (19%) Query: 77 YDLERFGFAPRASPRQSDVMIVAGTLT-NKMASALRRVYDQMPEPRYVISMGSCANGG-- 133 Y++E F A R R DV +V GT++ ++ LR + Y+I++G+CA G Sbjct: 32 YEIEEFHMATRLEGRHFDVGLVTGTVSSHRDLEVLR---EARNRSDYLIALGTCATHGCL 88 Query: 134 -------------GYYHYSYSVVRGCD-----RIVPVDIYVPGCPPTAEALIYGILLLQK 175 Y + +R D V VD+ +PGCP L ++ + K Sbjct: 89 QASVELPLKEKLKAVYGDEGNPMRALDPKPVVEYVTVDLAIPGCPYDKNELFQALIDIAK 148 Query: 176 KIR 178 I Sbjct: 149 GIE 151 >gi|218193059|gb|EEC75486.1| hypothetical protein OsI_12075 [Oryza sativa Indica Group] Length = 396 Score = 46.5 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 13/24 (54%), Positives = 18/24 (75%) Query: 38 FLVTSVDQLVTWARTGSLMWMTFG 61 F+++ VD L+ WAR GS+ MTFG Sbjct: 295 FVISKVDDLMNWARRGSIWPMTFG 318 >gi|332995893|gb|EGK15528.1| hydrogenase-4 component I domain protein [Shigella flexneri K-218] Length = 70 Score = 46.5 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 10/29 (34%), Positives = 14/29 (48%) Query: 60 FGLACCAVEMMQASMPRYDLERFGFAPRA 88 G C +E+ A P +D ERFG + Sbjct: 42 GGCNACEIEIFAAITPVFDAERFGIKVVS 70 >gi|296109068|ref|YP_003616017.1| hypothetical protein Metin_0383 [Methanocaldococcus infernus ME] gi|295433882|gb|ADG13053.1| hypothetical protein Metin_0383 [Methanocaldococcus infernus ME] Length = 285 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 31/129 (24%), Positives = 46/129 (35%), Gaps = 42/129 (32%) Query: 89 SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY------------Y 136 P DV +V G + NK L + + + + V++ G+CA GG Sbjct: 47 IPDGIDVFLVEGGIRNKHDEHLIKEIRE--KSKIVVAFGTCAAYGGIPGLANLYDKEELL 104 Query: 137 HYSYS--------------------VVRGCDRIVPVDIYVPGCPPTAEAL---IYGIL-- 171 Y+ V+R V VD +PGCPP + + + IL Sbjct: 105 KEVYNTDSTDNKGEMPKEEIPELTDVLRPISDYVKVDYVIPGCPPCPDEIAKALEAILKG 164 Query: 172 ---LLQKKI 177 L KKI Sbjct: 165 EAPKLSKKI 173 >gi|152990706|ref|YP_001356428.1| Ni-Fe hydrogenase, small subunit HupS [Nitratiruptor sp. SB155-2] gi|151422567|dbj|BAF70071.1| Ni-Fe hydrogenase, small subunit HupS [Nitratiruptor sp. SB155-2] Length = 286 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 46/118 (38%), Gaps = 26/118 (22%) Query: 79 LERFGFAPRA---SPRQ--------SDVMIVAGTLTNKMASALRRVY----DQMPEPRYV 123 L++F F SP Q D+++V G L +Y D + + + Sbjct: 31 LQQFEFLYHPLLPSPLQLTELHKADCDILVVEGGLKQGWKKGKHDLYEIFTDLAKKAKKI 90 Query: 124 ISMGSCANGGGYYHYSYSVVRGC-----------DRIVPVDIYVPGCPPTAEALIYGI 170 +++GSCA GG + + G ++ + +PGCP E + +GI Sbjct: 91 VAVGSCAVYGGVFKEFDPTITGVLFDKNQKNRLYEQFFDKTVNIPGCPAHPEWIAFGI 148 >gi|217966523|ref|YP_002352029.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Dictyoglomus turgidum DSM 6724] gi|217335622|gb|ACK41415.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Dictyoglomus turgidum DSM 6724] Length = 180 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 35/176 (19%), Positives = 69/176 (39%), Gaps = 62/176 (35%) Query: 54 SLMWMTFGLACCAVEMMQASMPRYDL-ERF------GFAPRASP--------RQSDVMIV 98 S+ G + C M D+ ER G A+P ++D+ I+ Sbjct: 8 SIWCE--GCSGC-------HMSFLDMDERLVELINKGLEINATPITDLKIPDEETDIGII 58 Query: 99 AGTL-TNKMASALRRVYDQMPEPRYVISMGSCANGGGY----------------YHYSYS 141 G + T+ ++ + ++ + ++++G CA GG Y + S Sbjct: 59 EGAVATDHHEEEVKMMRERC---KIIVALGDCAVFGGIPTMRNYFSKEELLERGYITTES 115 Query: 142 VV-----------------RGCDRIVPVDIYVPGCPPTAEALIYGILL-LQKKIRR 179 V + + ++ VD+Y+PGCPP+A+A+ Y + L+ +I + Sbjct: 116 TVDGKIPTSKEIGKHLPKTKAVNEVIKVDLYIPGCPPSADAIYYVLKEVLEGRIPK 171 >gi|256827280|ref|YP_003151239.1| hydrogenase (NiFe) small subunit HydA [Cryptobacterium curtum DSM 15641] gi|256583423|gb|ACU94557.1| hydrogenase (NiFe) small subunit HydA [Cryptobacterium curtum DSM 15641] Length = 439 Score = 45.7 bits (107), Expect = 0.003, Method: Composition-based stats. Identities = 19/88 (21%), Positives = 32/88 (36%), Gaps = 19/88 (21%) Query: 95 VMIVAGTLTNKM---------ASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRG 145 ++I G + K + + P V+++GSCA GG+ + + Sbjct: 125 ILIYEGAVLEKWGGEALRVAGKPGTEHLLEAAPSANAVVALGSCAVNGGWMGANPNSAGA 184 Query: 146 CDRI---------VPVDIYVPGCPPTAE 164 VPV + +PGCP E Sbjct: 185 VGVEKFLKESGINVPV-VNIPGCPANPE 211 >gi|20094366|ref|NP_614213.1| coenzyme F420-reducing hydrogenase, gamma subunit [Methanopyrus kandleri AV19] gi|19887431|gb|AAM02143.1| Coenzyme F420-reducing hydrogenase, gamma subunit [Methanopyrus kandleri AV19] Length = 252 Score = 45.7 bits (107), Expect = 0.003, Method: Composition-based stats. Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 9/84 (10%) Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS---------YSV 142 + DV +V G + L V + ++++G+CA+ G + S + Sbjct: 68 ECDVAVVEGAVCLNDEHMLEEVEELEEHADTIVALGACASTGNFMRLSRGNQQAAPTHEA 127 Query: 143 VRGCDRIVPVDIYVPGCPPTAEAL 166 + VD VPGCPP EA+ Sbjct: 128 FVPLTEVADVDYAVPGCPPAPEAI 151 >gi|253702558|ref|YP_003023747.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Geobacter sp. M21] gi|251777408|gb|ACT19989.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Geobacter sp. M21] Length = 315 Score = 45.7 bits (107), Expect = 0.003, Method: Composition-based stats. Identities = 13/33 (39%), Positives = 18/33 (54%) Query: 141 SVVRGCDRIVPVDIYVPGCPPTAEALIYGILLL 173 SVV D ++ VD Y+PGCPP + + L Sbjct: 130 SVVSPLDTVIDVDFYLPGCPPHPAFIFEALTAL 162 >gi|197120246|ref|YP_002140673.1| methyl viologen-reducing hydrogenase, small subunit [Geobacter bemidjiensis Bem] gi|197089606|gb|ACH40877.1| methyl viologen-reducing hydrogenase, small subunit [Geobacter bemidjiensis Bem] Length = 315 Score = 45.3 bits (106), Expect = 0.004, Method: Composition-based stats. Identities = 28/115 (24%), Positives = 40/115 (34%), Gaps = 36/115 (31%) Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPR-YVISMGSCANGGGYYHYS----------- 139 + V +V+G + N R +QM + VI+ GSCA GG Sbjct: 51 HATVGLVSGAIRN---EHDRHAAEQMRKSCDIVIAWGSCAVFGGPAGAGNVHTPDEIAAA 107 Query: 140 ---------------------YSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLL 173 SVV D ++ VD Y+PGCPP + + L Sbjct: 108 VYLENKTTIPAPPPKREVSPLESVVSPLDTVIDVDFYLPGCPPHPVFIFEALTAL 162 >gi|189424611|ref|YP_001951788.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Geobacter lovleyi SZ] gi|189420870|gb|ACD95268.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Geobacter lovleyi SZ] Length = 316 Score = 45.3 bits (106), Expect = 0.004, Method: Composition-based stats. Identities = 10/33 (30%), Positives = 19/33 (57%) Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175 V D+++ VD+Y+ GCPP + ++ L + Sbjct: 134 VTPIDKVIDVDLYLAGCPPHPTYIFDALVSLLE 166 >gi|51244426|ref|YP_064310.1| Ni/Fe-hydrogenase, small subunit [Desulfotalea psychrophila LSv54] gi|50875463|emb|CAG35303.1| probable Ni/Fe-hydrogenase, small subunit [Desulfotalea psychrophila LSv54] Length = 364 Score = 45.3 bits (106), Expect = 0.004, Method: Composition-based stats. Identities = 24/97 (24%), Positives = 40/97 (41%), Gaps = 18/97 (18%) Query: 92 QSDVMIVAGTLTNKM---------ASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142 ++IV G + K +AL + + P+ +I++G+CA GG S + Sbjct: 109 HPFILIVEGAIPVKDNGIYCKIGGRTALEILGEVAPKATAIIAIGTCATSGGIQAASPNP 168 Query: 143 VRGCDRI--------VPVDIYVPGCPPTAEALIYGIL 171 VP+ + +PGCPP L+ IL Sbjct: 169 TGAVGVEDLPELTGNVPI-VNIPGCPPNPVNLLGTIL 204 >gi|154243755|ref|YP_001409328.1| Ni Fe-hydrogenase III large subunit-like protein [Xanthobacter autotrophicus Py2] gi|154246208|ref|YP_001417166.1| Ni Fe-hydrogenase III large subunit-like protein [Xanthobacter autotrophicus Py2] gi|154160293|gb|ABS67509.1| Ni Fe-hydrogenase III large subunit-like protein [Xanthobacter autotrophicus Py2] gi|154162877|gb|ABS70092.1| Ni Fe-hydrogenase III large subunit-like protein [Xanthobacter autotrophicus Py2] Length = 110 Score = 44.9 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 21/60 (35%), Positives = 27/60 (45%) Query: 72 ASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCAN 131 A DL R G PRQ++V++V L M A Y QMP PR V+ +G Sbjct: 41 ALAAGLDLSRAGLTEADGPRQANVLLVMLPLPAPMLKAATVAYAQMPRPRTVLVLGEGVI 100 >gi|254459031|ref|ZP_05072454.1| NADH ubiquinone oxidoreductase, 20 kda subunit [Campylobacterales bacterium GD 1] gi|207084302|gb|EDZ61591.1| NADH ubiquinone oxidoreductase, 20 kda subunit [Campylobacterales bacterium GD 1] Length = 287 Score = 44.9 bits (105), Expect = 0.005, Method: Composition-based stats. Identities = 25/101 (24%), Positives = 47/101 (46%), Gaps = 16/101 (15%) Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPE----PRYVISMGSCANGGGYYHYSY---SVVRG 145 D+M++ GT+++ A V D + + + ++++G+CA GG + S + Sbjct: 53 CDIMLIEGTISDDFKRADVLVVDIIKKYAKIVKKIVTVGTCATFGGIFKESDYENATGLH 112 Query: 146 CDRIVPVD---------IYVPGCPPTAEALIYGILLLQKKI 177 DR P+D I V GCP E L+ + ++K + Sbjct: 113 FDRNKPIDSFKNLLDKTISVSGCPVHPETLVNTLYAIKKSV 153 >gi|219849352|ref|YP_002463785.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Chloroflexus aggregans DSM 9485] gi|219543611|gb|ACL25349.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Chloroflexus aggregans DSM 9485] Length = 177 Score = 44.5 bits (104), Expect = 0.006, Method: Composition-based stats. Identities = 33/172 (19%), Positives = 54/172 (31%), Gaps = 62/172 (36%) Query: 51 RTGSLMWMTFGLACCA----------VEMMQ----ASMPRYDLERFGFAPRASPRQSDVM 96 R ++ G + C +E+ P D++RF P DV Sbjct: 5 RIATIW--LGGCSGCHMSLLDLDEWLIELAAQADLVYSPIADVKRF-------PSHVDVT 55 Query: 97 IVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-----YSYSV--------- 142 ++ G + N L + + ++S G CA G S Sbjct: 56 LIEGAIANN--EHLELAHIARRNSKIIVSFGDCAVSGNVTALRNPLGSPEQLLQQVYIEH 113 Query: 143 --------------------VRGCDRIVPVDIYVPGCPPTA---EALIYGIL 171 V +++PVD Y+ GCPP+A AL+ +L Sbjct: 114 SDPRGKIPHEPGIVPVLLDKVMPVHQVIPVDYYLSGCPPSAPRIRALLEALL 165 >gi|258406379|ref|YP_003199121.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfohalobium retbaense DSM 5692] gi|257798606|gb|ACV69543.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfohalobium retbaense DSM 5692] Length = 334 Score = 44.5 bits (104), Expect = 0.006, Method: Composition-based stats. Identities = 15/39 (38%), Positives = 25/39 (64%), Gaps = 3/39 (7%) Query: 136 YHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQ 174 +H S VR ++V VD ++PGCPPT E ++ + ++Q Sbjct: 147 FHDS---VRALHQVVDVDYFLPGCPPTPERILDLLGVVQ 182 >gi|188496128|ref|ZP_03003398.1| hydrogenase-4 component I [Escherichia coli 53638] gi|188491327|gb|EDU66430.1| hydrogenase-4 component I [Escherichia coli 53638] Length = 124 Score = 44.5 bits (104), Expect = 0.006, Method: Composition-based stats. Identities = 15/30 (50%), Positives = 21/30 (70%), Gaps = 4/30 (13%) Query: 152 VDIYVPGCPPTAEALIYGIL----LLQKKI 177 +D+++PGCPPT A I+G LLQ+KI Sbjct: 6 IDVWIPGCPPTPAATIHGFAVALGLLQQKI 35 >gi|289191703|ref|YP_003457644.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanocaldococcus sp. FS406-22] gi|288938153|gb|ADC68908.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanocaldococcus sp. FS406-22] Length = 298 Score = 44.5 bits (104), Expect = 0.006, Method: Composition-based stats. Identities = 25/126 (19%), Positives = 44/126 (34%), Gaps = 36/126 (28%) Query: 84 FAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY-------- 135 + P + D+ ++ G + NK + + + VI+ G+CA GG Sbjct: 41 MDVKEIPDEIDIALIEGGIRNK--ENEEIAKEMRNKAKIVIAFGTCATFGGVPGLGNLYS 98 Query: 136 --------YHYSYSV------------------VRGCDRIVPVDIYVPGCPPTAEALIYG 169 Y + S V+ I+ VD ++PGCPP E + Sbjct: 99 KEEILEKVYKTTLSTKNDEGIIPSEEVPPLTSRVKPLSEIIDVDYFIPGCPPNPEMIAKV 158 Query: 170 ILLLQK 175 + L + Sbjct: 159 LKALLE 164 >gi|254431413|ref|ZP_05045116.1| F420-non reducing hydrogenase, subunit gamma [Cyanobium sp. PCC 7001] gi|197625866|gb|EDY38425.1| F420-non reducing hydrogenase, subunit gamma [Cyanobium sp. PCC 7001] Length = 193 Score = 44.5 bits (104), Expect = 0.006, Method: Composition-based stats. Identities = 30/125 (24%), Positives = 39/125 (31%), Gaps = 41/125 (32%) Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGG---------------- 133 P DV +V G + A L R V+S G CA G Sbjct: 56 PENVDVCLVEGAV--ANADNLELALQLRQRSRLVVSFGDCAVTGNVPALRNLWSEVDGGS 113 Query: 134 -----------------------GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGI 170 G VR ++ VD+Y+PGCPP+AE + I Sbjct: 114 RQSVLDRGYLELADTGAQHPHAPGIVPELLERVRPLHEVIAVDLYLPGCPPSAERIRAAI 173 Query: 171 LLLQK 175 L K Sbjct: 174 EPLLK 178 >gi|301107928|ref|XP_002903046.1| conserved hypothetical protein [Phytophthora infestans T30-4] gi|262098164|gb|EEY56216.1| conserved hypothetical protein [Phytophthora infestans T30-4] Length = 62 Score = 44.5 bits (104), Expect = 0.007, Method: Composition-based stats. Identities = 27/50 (54%), Positives = 35/50 (70%), Gaps = 3/50 (6%) Query: 106 MASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155 MA +R V+D MP+ V+ MGSCA+GGGYYHYSY+ V G +R V + Y Sbjct: 1 MALGMRSVHDLMPD---VVFMGSCADGGGYYHYSYAEVYGYNRFVLLGFY 47 >gi|150401637|ref|YP_001325403.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanococcus aeolicus Nankai-3] gi|150014340|gb|ABR56791.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanococcus aeolicus Nankai-3] Length = 288 Score = 44.5 bits (104), Expect = 0.007, Method: Composition-based stats. Identities = 12/31 (38%), Positives = 18/31 (58%) Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLL 173 ++ ++ VDI +PGCPPT + IL L Sbjct: 135 LKPVSDVIDVDIELPGCPPTPAMIANAILAL 165 >gi|149194374|ref|ZP_01871471.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Caminibacter mediatlanticus TB-2] gi|149135549|gb|EDM24028.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Caminibacter mediatlanticus TB-2] Length = 282 Score = 44.5 bits (104), Expect = 0.007, Method: Composition-based stats. Identities = 20/93 (21%), Positives = 46/93 (49%), Gaps = 10/93 (10%) Query: 93 SDVMIVAGTL----TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 148 SD++I+ G L + ++ + + + ++VI +G+C++ GG + + + Sbjct: 52 SDILIIEGALREGFKRNNKNLIKLIEELIINSKFVICLGTCSSYGGIFGEG-VMFNKKEN 110 Query: 149 IVPVD-----IYVPGCPPTAEALIYGILLLQKK 176 + D I +PGCPP L Y + +++++ Sbjct: 111 GIFYDYKDKIINIPGCPPHPNWLGYVLYMIKEQ 143 >gi|150400536|ref|YP_001324302.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanococcus aeolicus Nankai-3] gi|150013239|gb|ABR55690.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanococcus aeolicus Nankai-3] Length = 300 Score = 44.5 bits (104), Expect = 0.007, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 43/126 (34%), Gaps = 36/126 (28%) Query: 84 FAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY-------- 135 + P D+ ++ G + NK + + + V++ G+CA GG Sbjct: 42 MDVKEIPDNIDIALIEGGIRNK--ENEEIAIEMRKKAKIVVAFGTCAVYGGVPGLGNLHS 99 Query: 136 --------YHYSYSV------------------VRGCDRIVPVDIYVPGCPPTAEALIYG 169 Y + S VR ++ VD +PGCPP E + Sbjct: 100 NEEILDKAYKTTPSTENEKGIIPNEEIPELTSRVRPLPDVIDVDYIIPGCPPEPELIAKI 159 Query: 170 ILLLQK 175 ++ L + Sbjct: 160 LIALVE 165 >gi|134045692|ref|YP_001097178.1| F420-non-reducing hydrogenase subunit G [Methanococcus maripaludis C5] gi|132663317|gb|ABO34963.1| F420-non-reducing hydrogenase subunit G [Methanococcus maripaludis C5] Length = 300 Score = 44.5 bits (104), Expect = 0.007, Method: Composition-based stats. Identities = 25/126 (19%), Positives = 44/126 (34%), Gaps = 36/126 (28%) Query: 84 FAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY-------- 135 + P DV ++ G + + L+ + + + VI+ G+CA GG Sbjct: 42 MDVKEIPDGIDVALIEGGI--RNEENLQTAQEMRKKAKIVIAFGTCAAFGGIPGMGNLYS 99 Query: 136 --------YHYSYSV------------------VRGCDRIVPVDIYVPGCPPTAEALIYG 169 Y ++S V+ ++ VD +PGCPP E + Sbjct: 100 NEALLEKAYKTTFSTKNEEGIIPSEDVPELTSRVKPLSDVIDVDYILPGCPPKPELIAEV 159 Query: 170 ILLLQK 175 + L K Sbjct: 160 LTSLLK 165 >gi|206900904|ref|YP_002251593.1| NAD-reducing hydrogenase HoxS delta subunit [Dictyoglomus thermophilum H-6-12] gi|206740007|gb|ACI19065.1| NAD-reducing hydrogenase HoxS delta subunit [Dictyoglomus thermophilum H-6-12] Length = 180 Score = 44.1 bits (103), Expect = 0.008, Method: Composition-based stats. Identities = 26/124 (20%), Positives = 54/124 (43%), Gaps = 38/124 (30%) Query: 91 RQSDVMIVAGTL-TNKMASALRRVYDQMPEPRYVISMGSCANGGGY-------------- 135 +D+ I+ G + T+ ++ + ++ + ++++G CA GG Sbjct: 51 EGTDIGIIEGAVATDHHEEEVKMMRERC---KIIVALGDCAVFGGIPTMRNYIPREELLE 107 Query: 136 --YHYSYSVV-----------------RGCDRIVPVDIYVPGCPPTAEALIYGILL-LQK 175 Y + S V + + ++ VD+YVPGCPP+A+A+ Y + L+ Sbjct: 108 RGYITTESTVDGKIPTSPEIGKHLPKTKAVNEVIKVDLYVPGCPPSADAIYYVLKEVLEG 167 Query: 176 KIRR 179 +I + Sbjct: 168 RIPK 171 >gi|18977703|ref|NP_579060.1| H-II delta (hydrogenase subunit delta) [Pyrococcus furiosus DSM 3638] gi|7406956|gb|AAF61853.1|AF176650_3 sulfhydrogenase II subunit d [Pyrococcus furiosus DSM 3638] gi|18893437|gb|AAL81455.1| H-II delta (hydrogenase subunit delta) [Pyrococcus furiosus DSM 3638] Length = 237 Score = 44.1 bits (103), Expect = 0.008, Method: Composition-based stats. Identities = 28/105 (26%), Positives = 41/105 (39%), Gaps = 23/105 (21%) Query: 94 DVMIVAGTL-TNKMASALRRVYDQMPEPRYVISMGSCANGGGY--------------YHY 138 DV +V GT+ T + LR D Y+I++G+CA G Y Sbjct: 50 DVALVTGTVSTQRDLEVLR---DARNRSEYLIALGTCATHGSVQGVIENSKEAYRRVYGN 106 Query: 139 SYSVVR-----GCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178 V+ VPVD +PGCP E + ++ + K I Sbjct: 107 GKPPVKLLNPKPVTDYVPVDFAIPGCPYDKEEVFQVLIDIAKGIE 151 >gi|303243538|ref|ZP_07329880.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanothermococcus okinawensis IH1] gi|302486099|gb|EFL49021.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanothermococcus okinawensis IH1] Length = 289 Score = 44.1 bits (103), Expect = 0.008, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 46/120 (38%), Gaps = 36/120 (30%) Query: 89 SPRQSDVMIVAGTLTNKMASALRRVYDQMPEP-RYVISMGSCANGGGY------------ 135 P DV +V G + N + + +++ E + V++ GSCA GG Sbjct: 50 IPEGIDVFLVEGGIRN---EHDKHLVEEIREKSKIVVAWGSCAAFGGIPGLGNLYTKEEF 106 Query: 136 YHYSYSV--------------------VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175 + YS V+ ++V VD+ +PGCPP E I+ L + Sbjct: 107 LNTIYSTASTDNPGEIPSEDIPPLEEEVKPISKVVKVDLVLPGCPPRPEHNAEAIVALLE 166 >gi|20093619|ref|NP_613466.1| coenzyme F420-reducing hydrogenase, gamma subunit [Methanopyrus kandleri AV19] gi|19886485|gb|AAM01396.1| Coenzyme F420-reducing hydrogenase, gamma subunit [Methanopyrus kandleri AV19] Length = 305 Score = 44.1 bits (103), Expect = 0.010, Method: Composition-based stats. Identities = 20/121 (16%), Positives = 42/121 (34%), Gaps = 37/121 (30%) Query: 89 SPRQSDVMIVAGTL-TNKMASALRRVYDQMPEPRYVISMGSCANGGGY------------ 135 P +V ++ G++ + + + V+++G+CA GG Sbjct: 50 IPEHVNVAVIEGSIRNEEDLEVAEELREA---ADIVVAVGTCACYGGVHGLANLYQLDDI 106 Query: 136 ----YHYSYSV-----------------VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQ 174 + + + VR ++ VD +PGCPP E++ I + Sbjct: 107 LEWVFKETPTTDDEGETPEEVVPELFGYVRPLPEVIDVDYMLPGCPPKPESIAEVITAIL 166 Query: 175 K 175 + Sbjct: 167 E 167 >gi|45358385|ref|NP_987942.1| coenzyme F420-non-reducing hydrogenase subunit gamma [Methanococcus maripaludis S2] gi|44921143|emb|CAF30378.1| coenzyme F420-non-reducing hydrogenase subunit gamma [Methanococcus maripaludis S2] Length = 300 Score = 44.1 bits (103), Expect = 0.010, Method: Composition-based stats. Identities = 30/129 (23%), Positives = 48/129 (37%), Gaps = 39/129 (30%) Query: 84 FAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY-------- 135 + P DV ++ G + + L + + + VI+ G+CA GG Sbjct: 42 MDVKEIPDDIDVALIEGGI--RNEENLHIAQEMRKKAKIVIAFGTCAVYGGIPGIGNLYS 99 Query: 136 --------YHYSYSV------------------VRGCDRIVPVDIYVPGCPPTAEALIYG 169 Y ++S V+ ++ VD +PGCPP E LI G Sbjct: 100 NEALLEKAYKTTFSTKNEEGIIPSEDVPELTSRVKPLSDVIDVDYILPGCPPKPE-LIAG 158 Query: 170 IL--LLQKK 176 +L LL+ K Sbjct: 159 VLTSLLEGK 167 >gi|116751372|ref|YP_848059.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Syntrophobacter fumaroxidans MPOB] gi|116700436|gb|ABK19624.1| F420-non-reducing hydrogenase subunit G [Syntrophobacter fumaroxidans MPOB] Length = 309 Score = 43.8 bits (102), Expect = 0.011, Method: Composition-based stats. Identities = 11/33 (33%), Positives = 18/33 (54%) Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175 D V VD+Y+PGCPP + + ++ L + Sbjct: 142 CSALDEQVKVDVYLPGCPPHPDHVFAALVALVE 174 >gi|182415490|ref|YP_001820556.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Opitutus terrae PB90-1] gi|177842704|gb|ACB76956.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Opitutus terrae PB90-1] Length = 334 Score = 43.8 bits (102), Expect = 0.011, Method: Composition-based stats. Identities = 15/35 (42%), Positives = 20/35 (57%) Query: 141 SVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175 VR D++V VD Y+PGCPPT + I L + Sbjct: 148 HTVRSLDQVVAVDYYIPGCPPTPKITKAAITALLE 182 >gi|15668907|ref|NP_247711.1| coenzyme F420-reducing hydrogenase subunit gamma [Methanocaldococcus jannaschii DSM 2661] gi|2496112|sp|Q58136|Y726_METJA RecName: Full=Uncharacterized protein MJ0726 gi|1591442|gb|AAB98722.1| coenzyme F420-reducing hydrogenase, gamma subunit [Methanocaldococcus jannaschii DSM 2661] Length = 216 Score = 43.4 bits (101), Expect = 0.013, Method: Composition-based stats. Identities = 20/94 (21%), Positives = 42/94 (44%), Gaps = 10/94 (10%) Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-------HYSYSVVRGC 146 D+++V G + ++++ + + +I++GSCA GG+ + Sbjct: 26 DIVLVGGAVNLDDEEEVKKIMEIRKNSKVLIAVGSCAVSGGFQRMLIGLENGFPQRFVRI 85 Query: 147 DRIVPVDIYVPGCPPTAEA---LIYGILLLQKKI 177 +V VD + GCPP E ++ ++ K+I Sbjct: 86 GDVVKVDYAIIGCPPDEEEVERIVKAVIEKDKEI 119 >gi|212702286|ref|ZP_03310414.1| hypothetical protein DESPIG_00297 [Desulfovibrio piger ATCC 29098] gi|212674279|gb|EEB34762.1| hypothetical protein DESPIG_00297 [Desulfovibrio piger ATCC 29098] Length = 316 Score = 43.4 bits (101), Expect = 0.014, Method: Composition-based stats. Identities = 21/85 (24%), Positives = 42/85 (49%), Gaps = 13/85 (15%) Query: 106 MASALRRVYDQMPEPRYVISMGSCANGGGY---------YHYSYSVVRGCDRIVPVDIYV 156 MA ++++ P+ V+++G+CA GG + ++++ PV + + Sbjct: 135 MADLVKKL---APDAAAVLALGTCAAYGGIPAAKGSVTEAMGTGALLKQAGIKTPV-VNI 190 Query: 157 PGCPPTAEALIYGILLLQKKIRRVG 181 PGCPP + ++ I L +KI+ G Sbjct: 191 PGCPPQPDWIVGTIALALQKIKEKG 215 >gi|78222330|ref|YP_384077.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Geobacter metallireducens GS-15] gi|78193585|gb|ABB31352.1| NAD(P)-dependent nickel-iron dehydrogenase subunit HoxY [Geobacter metallireducens GS-15] Length = 180 Score = 43.4 bits (101), Expect = 0.015, Method: Composition-based stats. Identities = 38/174 (21%), Positives = 61/174 (35%), Gaps = 57/174 (32%) Query: 50 ARTGSLMWMT---FGLACCA----------VEMMQAS----MPRYDLERFGFAPRASPRQ 92 R G + + T G + C VE+ + P D + F PR+ Sbjct: 2 GRRGRIRFATVWLGGCSGCHMSFLDLDERLVELAGLADMVYGPFMDAKEF-------PRK 54 Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH--------------- 137 DV +V G +TN+ A+ + + R V+S+G CA G Sbjct: 55 VDVTLVEGAVTNRANLAMALMLRE--RSRIVVSLGDCAVTGNVTSLRNQLPVADVLATFL 112 Query: 138 ---------YSYSVVR-------GCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175 Y+ V +++ VD ++PGCPP E + I L + Sbjct: 113 SCGEGSVPAMDYNAVPELLPRALPLHQVIAVDGFLPGCPPDPERIWTAIGCLLR 166 >gi|320353845|ref|YP_004195184.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfobulbus propionicus DSM 2032] gi|320122347|gb|ADW17893.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfobulbus propionicus DSM 2032] Length = 308 Score = 43.4 bits (101), Expect = 0.016, Method: Composition-based stats. Identities = 12/31 (38%), Positives = 18/31 (58%) Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLL 173 V D V +D+ +PGCPP E ++ I+ L Sbjct: 137 VYSVDEQVRLDLCLPGCPPRPETIVEAIVAL 167 >gi|78224510|ref|YP_386257.1| F420-non-reducing hydrogenase subunit G [Geobacter metallireducens GS-15] gi|78195765|gb|ABB33532.1| F420-non-reducing hydrogenase subunit G [Geobacter metallireducens GS-15] Length = 316 Score = 43.4 bits (101), Expect = 0.016, Method: Composition-based stats. Identities = 11/33 (33%), Positives = 18/33 (54%) Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175 V D ++ VD+Y+PGC P + +L L + Sbjct: 132 VSPLDSVIDVDLYLPGCAPHPAFVFDALLALLE 164 >gi|170290731|ref|YP_001737547.1| coenzyme F420-reducing hydrogenase, gamma subunit [Candidatus Korarchaeum cryptofilum OPF8] gi|170174811|gb|ACB07864.1| Coenzyme F420-reducing hydrogenase, gamma subunit [Candidatus Korarchaeum cryptofilum OPF8] Length = 319 Score = 43.4 bits (101), Expect = 0.016, Method: Composition-based stats. Identities = 11/22 (50%), Positives = 15/22 (68%) Query: 143 VRGCDRIVPVDIYVPGCPPTAE 164 + D ++ VD Y+PGCPPT E Sbjct: 150 LDPLDAVIDVDYYIPGCPPTPE 171 >gi|37787354|gb|AAP50522.1| Hox1Y [Thiocapsa roseopersicina] Length = 180 Score = 43.0 bits (100), Expect = 0.018, Method: Composition-based stats. Identities = 15/33 (45%), Positives = 24/33 (72%) Query: 141 SVVRGCDRIVPVDIYVPGCPPTAEALIYGILLL 173 +VV+ +V VD++VPGCPP+A+A+ Y + L Sbjct: 132 AVVKPIHGVVGVDVFVPGCPPSADAIWYVLSEL 164 >gi|39997513|ref|NP_953464.1| nickel-dependent hydrogenase small subunit [Geobacter sulfurreducens PCA] gi|39984404|gb|AAR35791.1| nickel-dependent hydrogenase, small subunit, putative [Geobacter sulfurreducens PCA] gi|298506455|gb|ADI85178.1| methyl viologen-reducing hydrogenase, small subunit [Geobacter sulfurreducens KN400] Length = 316 Score = 43.0 bits (100), Expect = 0.018, Method: Composition-based stats. Identities = 11/33 (33%), Positives = 18/33 (54%) Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175 V D ++ VD+Y+PGC P + +L L + Sbjct: 132 VSPLDSVIDVDLYLPGCAPHPAFVFDALLALLE 164 >gi|167627041|ref|YP_001677541.1| hypothetical protein Fphi_0818 [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|167597042|gb|ABZ87040.1| conserved hypothetical protein [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 268 Score = 43.0 bits (100), Expect = 0.019, Method: Composition-based stats. Identities = 23/108 (21%), Positives = 41/108 (37%), Gaps = 31/108 (28%) Query: 94 DVMIVAGTL-TNKMASALRRVYDQMPEPRYVISMGSCANGGGY----------------- 135 D+ + G++ T+ L+++ + + +YVI++G+CA GG Sbjct: 63 DIAFIEGSVNTHHDIPRLQKIRE---KAKYVIAIGACAVAGGIQALRNYTNAAELLEWQK 119 Query: 136 ----------YHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLL 173 S + V VD + GCP T E ++ I L Sbjct: 120 AVYPQDTDVIIKEDLSTAKAIKEYVNVDFEISGCPITTEQILKAIRQL 167 >gi|241667628|ref|ZP_04755206.1| hypothetical protein FphipA2_02580 [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254876173|ref|ZP_05248883.1| predicted protein [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254842194|gb|EET20608.1| predicted protein [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 268 Score = 43.0 bits (100), Expect = 0.020, Method: Composition-based stats. Identities = 23/108 (21%), Positives = 41/108 (37%), Gaps = 31/108 (28%) Query: 94 DVMIVAGTL-TNKMASALRRVYDQMPEPRYVISMGSCANGGGY----------------- 135 D+ + G++ T+ L+++ + + +YVI++G+CA GG Sbjct: 63 DIAFIEGSVNTHHDIPRLQKIRE---KAKYVIAIGACAVAGGIQALRNYTNAAELLEWQK 119 Query: 136 ----------YHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLL 173 S + V VD + GCP T E ++ I L Sbjct: 120 AVYPQDTDVIIKEDLSTAKAIKEYVNVDFEISGCPITTEQILKAIRQL 167 >gi|2072169|gb|AAB53703.1| bidirectional hydrogenase small subunit [Prochlorothrix hollandica] Length = 178 Score = 43.0 bits (100), Expect = 0.020, Method: Composition-based stats. Identities = 31/148 (20%), Positives = 47/148 (31%), Gaps = 44/148 (29%) Query: 61 GLACCAVEMMQASMPRYDLERF--------GFAPRASPRQSDVMIVAGTLTNKMASALRR 112 G + C + + DL R G + P DV +V G + L Sbjct: 13 GCSGCHMSFLDLDEWLIDLAREVEVVYSPVGCDLKDYPEGVDVCLVEGAV--ANEENLEL 70 Query: 113 VYDQMPEPRYVISMGSCAN-------------GGGYYHYSYSVVRGCD------------ 147 Y + VIS G CA G +Y + Sbjct: 71 AYRVRQRTKMVISFGDCAVTANVPAMLGDGDAGNAVLKRAYLELGDVTPQLPDEPGIVPP 130 Query: 148 ---------RIVPVDIYVPGCPPTAEAL 166 +++PVD+Y+PGCPP A+ + Sbjct: 131 LLDQVLPLHQVIPVDLYLPGCPPPADRI 158 >gi|156741352|ref|YP_001431481.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Roseiflexus castenholzii DSM 13941] gi|156232680|gb|ABU57463.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Roseiflexus castenholzii DSM 13941] Length = 181 Score = 43.0 bits (100), Expect = 0.020, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 43/118 (36%), Gaps = 39/118 (33%) Query: 90 PRQSDVMIVAGTL-TNKMASALRRVYDQMPEPRYVISMGSCANGG--------------- 133 P DV +V G + +R+V + R +I+ G CA G Sbjct: 49 PDHVDVALVEGAVANEDHLHLIRQVRE---RTRILIAFGDCAVTGNVTALRNPLGAPEAL 105 Query: 134 ------------GYYHYSYSVV-------RGCDRIVPVDIYVPGCPPTAEALIYGILL 172 G ++ +V + ++VPVD+Y+PGCPP I +L Sbjct: 106 LHTIYIERAEIAGCLPHAPGIVPQLLDKVQPVHKVVPVDVYLPGCPP-PAPRIRALLE 162 >gi|297569388|ref|YP_003690732.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfurivibrio alkaliphilus AHT2] gi|296925303|gb|ADH86113.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfurivibrio alkaliphilus AHT2] Length = 178 Score = 43.0 bits (100), Expect = 0.021, Method: Composition-based stats. Identities = 21/113 (18%), Positives = 40/113 (35%), Gaps = 34/113 (30%) Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY-------------- 135 P + D+ ++ G ++ A R+ R V+++G CA G Sbjct: 50 PDRVDLALLEGAVSTPEDEAKARLVRA--HSRLVVALGDCACQGNVPALRNRLDNEQLLD 107 Query: 136 --YH---YSYSVVRG-------------CDRIVPVDIYVPGCPPTAEALIYGI 170 Y + R++ VD+++PGCPP A++ + Sbjct: 108 LVYRQQADGPAAAPPDRNVPPLLTHSLPLHRVIAVDLFLPGCPPPPAAIVRAL 160 >gi|148657643|ref|YP_001277848.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Roseiflexus sp. RS-1] gi|148569753|gb|ABQ91898.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Roseiflexus sp. RS-1] Length = 181 Score = 42.6 bits (99), Expect = 0.023, Method: Composition-based stats. Identities = 34/175 (19%), Positives = 55/175 (31%), Gaps = 62/175 (35%) Query: 47 VTWARTGSLMWMTFGLACCAV----------EMMQ----ASMPRYDLERFGFAPRASPRQ 92 + R ++ G + C + E+ P D++ + P + Sbjct: 1 MNKLRLATVW--LGGCSGCHMSFLDLDEWLFELAHRVDLVYSPLADVKEY-------PDR 51 Query: 93 SDVMIVAGTL-TNKMASALRRVYDQMPEPRYVISMGSCANGG------------------ 133 DV +V G + +R+V + R VI+ G CA G Sbjct: 52 VDVALVEGAVANEDNLHLIRQVRE---RTRLVIAFGDCAVTGNVTALRNVLGDPETLLHT 108 Query: 134 ----------------GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILL 172 G V ++VPVD+Y+PGCPP I +L Sbjct: 109 IYVERADTAGQMPLAPGIVPRLLDRVYPVHKVVPVDVYLPGCPP-PAQRIRALLE 162 >gi|71906620|ref|YP_284207.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Dechloromonas aromatica RCB] gi|71846241|gb|AAZ45737.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Dechloromonas aromatica RCB] Length = 182 Score = 42.6 bits (99), Expect = 0.024, Method: Composition-based stats. Identities = 29/113 (25%), Positives = 45/113 (39%), Gaps = 36/113 (31%) Query: 87 RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGG------------ 134 SP D+ I+ G L N A + + + + +I+MG+CA GG Sbjct: 50 TCSPD-CDIGIIEGGLCN--AENVHVLREFRKNCKILIAMGACAINGGLPAQRNHLPLTT 106 Query: 135 ----YYHYSY-----------------SVVRGCDRIVPVDIYVPGCPPTAEAL 166 YH S + V +V VD ++PGCPP+A+A+ Sbjct: 107 ILEEVYHTSPGLANGMIPNDPELPLPLNQVHPIHEVVKVDYFMPGCPPSADAI 159 >gi|11498969|ref|NP_070202.1| methylviologen-reducing hydrogenase, subunit gamma (vhuG) [Archaeoglobus fulgidus DSM 4304] gi|2649199|gb|AAB89871.1| methylviologen-reducing hydrogenase, subunit gamma (vhuG) [Archaeoglobus fulgidus DSM 4304] Length = 293 Score = 42.6 bits (99), Expect = 0.026, Method: Composition-based stats. Identities = 12/33 (36%), Positives = 18/33 (54%) Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175 V+ D +V VD Y+ GCPPT E + + + Sbjct: 127 VKPLDSVVEVDCYIGGCPPTPEQIYNAFKAIFE 159 >gi|20093976|ref|NP_613823.1| coenzyme F420-reducing hydrogenase, gamma subunit [Methanopyrus kandleri AV19] gi|19886938|gb|AAM01753.1| Coenzyme F420-reducing hydrogenase, gamma subunit [Methanopyrus kandleri AV19] Length = 238 Score = 42.6 bits (99), Expect = 0.028, Method: Composition-based stats. Identities = 23/92 (25%), Positives = 40/92 (43%), Gaps = 9/92 (9%) Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY--------YHYSYS-VV 143 +D++ V G + A L ++ + V+S+GSCA GG+ Y V Sbjct: 43 ADILFVEGAVDFADAETLEKLEEAASAVSTVVSLGSCAATGGFERHVIGMRDPDRYHFTV 102 Query: 144 RGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175 + V D + GCPPT + + + L++ Sbjct: 103 FPAAKFVETDYAINGCPPTTDVIASFLRALEE 134 >gi|126180116|ref|YP_001048081.1| coenzyme F420 hydrogenase [Methanoculleus marisnigri JR1] gi|125862910|gb|ABN58099.1| coenzyme F420-reducing hydrogenase, gamma subunit [Methanoculleus marisnigri JR1] Length = 263 Score = 42.6 bits (99), Expect = 0.028, Method: Composition-based stats. Identities = 16/82 (19%), Positives = 33/82 (40%), Gaps = 9/82 (10%) Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYS---------VVR 144 DV +V G+ ++ + + + + +++ G CA G + Sbjct: 65 DVCLVEGSCCLNDKISVEELKEARAKSKVLVAYGGCAAYGNITRFCRGGQWNQPAQEAFV 124 Query: 145 GCDRIVPVDIYVPGCPPTAEAL 166 +V VD+Y+P CPP + + Sbjct: 125 PISEVVDVDLYIPSCPPCPQQV 146 >gi|150398830|ref|YP_001322597.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanococcus vannielii SB] gi|150011533|gb|ABR53985.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanococcus vannielii SB] Length = 300 Score = 42.2 bits (98), Expect = 0.029, Method: Composition-based stats. Identities = 23/126 (18%), Positives = 41/126 (32%), Gaps = 36/126 (28%) Query: 84 FAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY-------- 135 + P DV ++ G + + L + + + VI+ G+CA GG Sbjct: 42 MDVKEIPENIDVALIEGGI--RNEENLHTAKEMRKKAKIVIAFGTCAVYGGVPGMGNLHS 99 Query: 136 --------YHYSYSV------------------VRGCDRIVPVDIYVPGCPPTAEALIYG 169 Y + + V ++ VD +PGCPP E + Sbjct: 100 NDALLEKAYKTTVTTKNEEGIIPSEEVPKLTSRVMPLSEVIDVDYILPGCPPKPELIANV 159 Query: 170 ILLLQK 175 + L + Sbjct: 160 LTSLLE 165 >gi|159899902|ref|YP_001546149.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Herpetosiphon aurantiacus ATCC 23779] gi|159892941|gb|ABX06021.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Herpetosiphon aurantiacus ATCC 23779] Length = 124 Score = 42.2 bits (98), Expect = 0.030, Method: Composition-based stats. Identities = 19/86 (22%), Positives = 39/86 (45%), Gaps = 4/86 (4%) Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVY-DQMPEPRYVISMGSCANGGGYYHYSYSVVRGC 146 A+P +D+ ++ G + + AL V+ D + + +I++G + G + + Sbjct: 33 ATPAHADIFVLTGPIPLLLRPALSNVWRDFIADRAPLIALGRASIDGHPFGRGG--LAEL 90 Query: 147 DRIVPVDIYVPGCPPTAEALIYGILL 172 + V + G PPT A+ GI+ Sbjct: 91 PE-IQVAAKIDGDPPTVAAIQAGIVQ 115 >gi|57234567|ref|YP_181356.1| hydrogenase, group 3, VhuG subunit, putative [Dehalococcoides ethenogenes 195] gi|57225015|gb|AAW40072.1| hydrogenase, group 3, VhuG subunit, putative [Dehalococcoides ethenogenes 195] Length = 312 Score = 42.2 bits (98), Expect = 0.031, Method: Composition-based stats. Identities = 18/110 (16%), Positives = 41/110 (37%), Gaps = 35/110 (31%) Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY---------------- 135 ++D+ ++ G + + + + + ++++G+CA GG Sbjct: 60 EADLGLITGGI--RNEENKELALEMRKKCKIIVALGTCACFGGIPALANLSTTEAMLDQI 117 Query: 136 YHYSYSV-----------------VRGCDRIVPVDIYVPGCPPTAEALIY 168 ++ V D ++ VDI++PGCPPT ++ Sbjct: 118 FNKEKGTDPSSPPSDKSLPKLLDRVYAVDEVIKVDIHLPGCPPTPAHIVE 167 >gi|282165443|ref|YP_003357828.1| F420-non-reducing hydrogenase subunit G [Methanocella paludicola SANAE] gi|282157757|dbj|BAI62845.1| F420-non-reducing hydrogenase subunit G [Methanocella paludicola SANAE] Length = 304 Score = 42.2 bits (98), Expect = 0.036, Method: Composition-based stats. Identities = 32/156 (20%), Positives = 54/156 (34%), Gaps = 44/156 (28%) Query: 60 FGLACCAV---EMMQASMPRYDLERFGFAP----RASPRQSDVMIVAGTLTNKMASALRR 112 A C + ++ +A +P D F + P P ++ V IV+G + + + L Sbjct: 13 GACAGCEISVLDLHEALLPVLDKIEFVYIPVLMDTKHPPKATVGIVSGGV--RNSDNLHE 70 Query: 113 VYDQMPEPRYVISMGSCANGGG-------------------------------YYHYSYS 141 + + +I++GSCA GG Y Sbjct: 71 LLEIRKNCDILIALGSCACFGGTPGMANLYDLNALLEEVYMTTKSTKNDINRLPYMDGLP 130 Query: 142 VV----RGCDRIVPVDIYVPGCPPTAEALIYGILLL 173 + R V VD+ +PGC PT + I+ L Sbjct: 131 TLMPDMRPASDYVKVDVMIPGCGPTPAMIGAAIMSL 166 >gi|327401445|ref|YP_004342284.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Archaeoglobus veneficus SNP6] gi|327316953|gb|AEA47569.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Archaeoglobus veneficus SNP6] Length = 327 Score = 41.8 bits (97), Expect = 0.038, Method: Composition-based stats. Identities = 10/33 (30%), Positives = 18/33 (54%) Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175 + D ++ VD Y+PGCPP+ ++ L + Sbjct: 149 CKALDEVIDVDYYIPGCPPSVNIIVDAFTALLE 181 >gi|27382055|ref|NP_773584.1| HupU protein [Bradyrhizobium japonicum USDA 110] gi|530183|gb|AAA62627.1| hupU [Bradyrhizobium japonicum USDA 110] gi|27355225|dbj|BAC52209.1| HupU protein [Bradyrhizobium japonicum USDA 110] Length = 338 Score = 41.8 bits (97), Expect = 0.040, Method: Composition-based stats. Identities = 38/182 (20%), Positives = 59/182 (32%), Gaps = 56/182 (30%) Query: 50 ARTGSLMWMTFGLACCAVEMMQASMPR-YD-LERFGFAPRASPR---------------- 91 T L C + ++++ +D L +FG P Sbjct: 6 GTTNVLWLQGASCGGCTMSILESGASGWFDELRQFGINLLWHPSVSEETGEEAVEVLQSV 65 Query: 92 -----QSDVMIVAGTLTN--------KM-----ASALRRVYDQMPEPRYVISMGSCANGG 133 Q D++++ G++ M S R + D P YVI++GSCA G Sbjct: 66 LDGKVQLDLLLLEGSVARGPNDSGRFNMLAGTNRSVYRWMLDLAPLADYVIAVGSCAAYG 125 Query: 134 GY--------------Y--HYSYSVVRGCDR---IVPVDIYVPGCPPTAEALIYGILLLQ 174 G + S + R +PV I V GC P ++ IL L Sbjct: 126 GVPAAGSNPTDAVGLQFEGSDSGGALGAGFRSRLGLPV-INVAGCAPHPGWMMETILALT 184 Query: 175 KK 176 K Sbjct: 185 SK 186 >gi|78188225|ref|YP_378563.1| hydrogenase/sulfur reductase, delta subunit [Chlorobium chlorochromatii CaD3] gi|78170424|gb|ABB27520.1| hydrogenase/sulfur reductase, delta subunit [Chlorobium chlorochromatii CaD3] Length = 247 Score = 41.8 bits (97), Expect = 0.040, Method: Composition-based stats. Identities = 21/87 (24%), Positives = 36/87 (41%), Gaps = 23/87 (26%) Query: 94 DVMIVAGTLTNKMA-SALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSV--------- 142 D+ ++ G++T + L + +Q + V++ GSCA GG +Y Sbjct: 55 DIALIEGSVTRQDEVERLLAIREQ---AKVVVAFGSCACFGGVNSLKNYHTISDCVHTVY 111 Query: 143 ---------VRGCDRIVPVDIYVPGCP 160 VR ++ VD +PGCP Sbjct: 112 GNMAVETLPVRKISDVIAVDFSIPGCP 138 >gi|147920870|ref|YP_685323.1| coenzyme F420-non-reducing hydrogenase (methyl viologen-reducing hydrogenase), gamma subunit [uncultured methanogenic archaeon RC-I] gi|110620719|emb|CAJ35997.1| coenzyme F420-non-reducing hydrogenase (methyl viologen-reducing hydrogenase), gamma subunit [uncultured methanogenic archaeon RC-I] Length = 305 Score = 41.8 bits (97), Expect = 0.041, Method: Composition-based stats. Identities = 30/157 (19%), Positives = 51/157 (32%), Gaps = 46/157 (29%) Query: 60 FGLACCAV---EMMQASMPRYDLERFGFAPR-----ASPRQSDVMIVAGTLTNKMASALR 111 A C + + +A +P D F + P P+ + V IV+G + + + L Sbjct: 12 GACAGCEISVLDTHEALLPILDKIEFVYIPVLMDTKHIPK-ATVGIVSGCV--RNSDNLH 68 Query: 112 RVYDQMPEPRYVISMGSCANGGG-------------------------------YYHYSY 140 + + ++++GSCA GG Y Sbjct: 69 ELLEMRKNVDILVALGSCACFGGTPGMANLYTPEQLLEEVYVTTKSTKNEIQRHPYMDGL 128 Query: 141 SVV----RGCDRIVPVDIYVPGCPPTAEALIYGILLL 173 + + V VD +PGC P + IL L Sbjct: 129 PTLLPDAKPLSDYVKVDAMIPGCGPRPAMIAQAILSL 165 >gi|116624101|ref|YP_826257.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Candidatus Solibacter usitatus Ellin6076] gi|116227263|gb|ABJ85972.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Candidatus Solibacter usitatus Ellin6076] Length = 176 Score = 41.8 bits (97), Expect = 0.044, Method: Composition-based stats. Identities = 13/32 (40%), Positives = 21/32 (65%) Query: 144 RGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175 R +VPVD++VPGCPP+A+ + + L + Sbjct: 134 RPVHELVPVDLFVPGCPPSADLIFSVLSELLE 165 >gi|94265736|ref|ZP_01289473.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [delta proteobacterium MLMS-1] gi|93453749|gb|EAT04125.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [delta proteobacterium MLMS-1] Length = 176 Score = 41.4 bits (96), Expect = 0.049, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 52/128 (40%), Gaps = 35/128 (27%) Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANG----------------- 132 P D+ ++ G ++N ++ Q + V+++G CA G Sbjct: 49 PEHVDLTLLEGAVSNDDDLEKAKLVRQ--RSKLVVALGDCAVGTNVPGMRNTLEREAILQ 106 Query: 133 -----------GGYYHYSYSVVR---GCDRIVPVDIYVPGCPPTAEALIYGI--LLLQKK 176 G +++ +++ VD+++PGCPP A A++ + +L Q++ Sbjct: 107 LIYHKLADHAPGIPTEQIPALLPQSLPLHQVIRVDLFLPGCPPPAAAIVQALNAVLAQQE 166 Query: 177 IRRVGNVK 184 + + +K Sbjct: 167 LSELPTLK 174 >gi|288574749|ref|ZP_06393106.1| Hydrogen dehydrogenase [Dethiosulfovibrio peptidovorans DSM 11002] gi|288570490|gb|EFC92047.1| Hydrogen dehydrogenase [Dethiosulfovibrio peptidovorans DSM 11002] Length = 179 Score = 41.4 bits (96), Expect = 0.063, Method: Composition-based stats. Identities = 12/31 (38%), Positives = 19/31 (61%) Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175 D V VD+Y+PGCPP A+ ++Y + + Sbjct: 135 PIDDEVKVDVYIPGCPPDADTILYVFQEILE 165 >gi|261402833|ref|YP_003247057.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanocaldococcus vulcanius M7] gi|261369826|gb|ACX72575.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanocaldococcus vulcanius M7] Length = 299 Score = 41.4 bits (96), Expect = 0.063, Method: Composition-based stats. Identities = 26/127 (20%), Positives = 43/127 (33%), Gaps = 43/127 (33%) Query: 84 FAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY-------- 135 + P D+ ++ G + NK + + + VI+ G+CA GG Sbjct: 42 MDVKEIPNDIDIALIEGGIRNK--ENEEIAKEMRKKAKIVIAFGTCAVFGGVPGLGNLYS 99 Query: 136 --------YHYSYSV------------------VRGCDRIVPVDIYVPGCPPTAE----- 164 Y + S V+ ++ VD ++PGCPP E Sbjct: 100 KDEILEKVYKSTLSTKNDEGIIPNEEVPPLTSRVKPLSEVIDVDYFIPGCPPDPELTAKV 159 Query: 165 --ALIYG 169 AL+ G Sbjct: 160 LSALLEG 166 >gi|332159193|ref|YP_004424472.1| hydrogenase (cytochrome-c3 hydrogenase delta chain) [Pyrococcus sp. NA2] gi|331034656|gb|AEC52468.1| hydrogenase (cytochrome-c3 hydrogenase delta chain) [Pyrococcus sp. NA2] Length = 239 Score = 41.1 bits (95), Expect = 0.064, Method: Composition-based stats. Identities = 27/102 (26%), Positives = 44/102 (43%), Gaps = 22/102 (21%) Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY-----------YHYSYSV 142 DV IV G+++ + L V + Y+I++G+CA GG Y Sbjct: 51 DVAIVTGSVSTQ--RDLEVVKEARNRAEYLIALGTCATHGGVQGGLENSVKENMKKVYGD 108 Query: 143 VRGCDRI---------VPVDIYVPGCPPTAEALIYGILLLQK 175 +RG ++ VPVD +PGCP E + ++ + K Sbjct: 109 IRGPTKVLEPRAVIDYVPVDFAIPGCPYEKEEVFQVLIDIAK 150 >gi|270307974|ref|YP_003330032.1| nickel-dependent hydrogenase, group 3, small subunit [Dehalococcoides sp. VS] gi|270153866|gb|ACZ61704.1| nickel-dependent hydrogenase, group 3, small subunit [Dehalococcoides sp. VS] Length = 312 Score = 41.1 bits (95), Expect = 0.067, Method: Composition-based stats. Identities = 20/110 (18%), Positives = 40/110 (36%), Gaps = 35/110 (31%) Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGG----------------Y 135 ++D+ I+ G + + + + + ++++G+CA GG Sbjct: 60 EADLGIITGGI--RNEENRELALEMRKKCKLIVALGTCACFGGIPALANLSTTEDMLKQV 117 Query: 136 YHYSYSV-----------------VRGCDRIVPVDIYVPGCPPTAEALIY 168 + V D I+ VDI++PGCPPT ++ Sbjct: 118 FSKEKGTDPASPPGDKSLPKMLDRVYAVDEIITVDIHLPGCPPTPAHIVE 167 >gi|83956303|ref|ZP_00964744.1| copper-translocating P-type ATPase [Sulfitobacter sp. NAS-14.1] gi|83839524|gb|EAP78705.1| copper-translocating P-type ATPase [Sulfitobacter sp. NAS-14.1] Length = 644 Score = 41.1 bits (95), Expect = 0.070, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 27/54 (50%) Query: 78 DLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCAN 131 DL +PR ++++IV G L + A Y Q+P PR ++++G+ Sbjct: 43 DLSGSHLRLVGTPRHANLLIVVGPLPPGLRDAAAVTYAQIPRPRAILALGAGDI 96 >gi|291614073|ref|YP_003524230.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Sideroxydans lithotrophicus ES-1] gi|291584185|gb|ADE11843.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Sideroxydans lithotrophicus ES-1] Length = 179 Score = 41.1 bits (95), Expect = 0.071, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 44/121 (36%), Gaps = 35/121 (28%) Query: 79 LERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGG---- 134 +R D+ IV G + N A + +++ + +I++G+CA GG Sbjct: 38 FDRSPITDIKHCGPCDIGIVEGGVCN--AENVHVLHEFRKNCKILIAIGACAINGGLPAQ 95 Query: 135 ------------YYHYSYSV-----------------VRGCDRIVPVDIYVPGCPPTAEA 165 Y + V +V +D ++PGCPP+A+A Sbjct: 96 RNHLDLASCLTEVYLTEPGLEHGHIPNDPELPLPLDKVHPLHEVVKIDYFIPGCPPSADA 155 Query: 166 L 166 + Sbjct: 156 I 156 >gi|289811568|ref|ZP_06542197.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 64 Score = 41.1 bits (95), Expect = 0.071, Method: Composition-based stats. Identities = 10/24 (41%), Positives = 15/24 (62%) Query: 158 GCPPTAEALIYGILLLQKKIRRVG 181 GCPP EA + ++LLQ+ I + Sbjct: 1 GCPPRPEAYMQALMLLQESIGKER 24 >gi|300088029|ref|YP_003758551.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299527762|gb|ADJ26230.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 249 Score = 41.1 bits (95), Expect = 0.080, Method: Composition-based stats. Identities = 28/131 (21%), Positives = 48/131 (36%), Gaps = 32/131 (24%) Query: 61 GLACCAV--------EMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRR 112 G C + E++ D+ F + D+ + G++T + A R Sbjct: 12 GCEGCQLDALNLEPDELLGLLGAV-DIVNFREVRTDRSDEYDIAFIEGSITRESEIA--R 68 Query: 113 VYDQMPEPRYVISMGSCANGGG----------------YYHYS---YSVV--RGCDRIVP 151 + + ++++G+CA GG Y Y + R D +V Sbjct: 69 LKEIRERAAVLVALGACACTGGINCMKNAYETEELLKGVYGDCAAYYDTIPTRPADAVVK 128 Query: 152 VDIYVPGCPPT 162 VD Y+ GCPPT Sbjct: 129 VDAYIRGCPPT 139 >gi|116749227|ref|YP_845914.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Syntrophobacter fumaroxidans MPOB] gi|116698291|gb|ABK17479.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Syntrophobacter fumaroxidans MPOB] Length = 312 Score = 40.7 bits (94), Expect = 0.084, Method: Composition-based stats. Identities = 11/31 (35%), Positives = 16/31 (51%) Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLL 173 V D + VDIY+PGC P + + + L Sbjct: 142 VYALDEKIKVDIYLPGCAPHPDQVFAALAGL 172 >gi|319790092|ref|YP_004151725.1| coenzyme F420 hydrogenase, subunit gamma [Thermovibrio ammonificans HB-1] gi|317114594|gb|ADU97084.1| coenzyme F420 hydrogenase, subunit gamma [Thermovibrio ammonificans HB-1] Length = 246 Score = 40.7 bits (94), Expect = 0.086, Method: Composition-based stats. Identities = 22/97 (22%), Positives = 39/97 (40%), Gaps = 13/97 (13%) Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS------YSVVRG 145 DV V G + + + R V + + + ++++G CA+ GG +S + Sbjct: 63 HLDVAFVEGAVCIEDRNHARLVRELSEKAKLIVAVGGCASFGGVRRFSRGNQFPQPTHQS 122 Query: 146 CDRIVPVDIY-------VPGCPPTAEALIYGILLLQK 175 I V++ +PGCPP L L L + Sbjct: 123 FVPITEVELLRGKIKYAIPGCPPNPSLLYSFFLALLE 159 >gi|294102537|ref|YP_003554395.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Aminobacterium colombiense DSM 12261] gi|293617517|gb|ADE57671.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Aminobacterium colombiense DSM 12261] Length = 179 Score = 40.7 bits (94), Expect = 0.086, Method: Composition-based stats. Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 1/37 (2%) Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILL-LQKKIRRV 180 D V VD+YVPGCPP A+ + Y LQ +I +V Sbjct: 135 PVDYEVKVDVYVPGCPPDADTIYYVFEEILQGRIPKV 171 >gi|91780573|ref|YP_555780.1| hydrogen dehydrogenase [Burkholderia xenovorans LB400] gi|91693233|gb|ABE36430.1| Hydrogen dehydrogenase [Burkholderia xenovorans LB400] Length = 193 Score = 40.7 bits (94), Expect = 0.089, Method: Composition-based stats. Identities = 35/163 (21%), Positives = 53/163 (32%), Gaps = 53/163 (32%) Query: 51 RTGSLMWMTFGLACCAVEMMQASMPRYDL-ERF-----GFAPRASP-------RQSDVMI 97 R L T LA C D+ ER SP Q D+ + Sbjct: 14 RPRKLKVATVSLAGC----FGCHTSFLDIDERLLELVQHIEFDRSPLTDIKEVGQCDIGL 69 Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGG----------------YYHYSYS 141 + G + N + R + + +++MG+CA GG Y Sbjct: 70 IEGGVCNSENVEVLRAFRAHCKT--LVAMGACAINGGLPAERNRFALADVLNEVYRDRAG 127 Query: 142 V------------------VRGCDRIVPVDIYVPGCPPTAEAL 166 + VR +V VD ++PGCPP+A+A Sbjct: 128 LREGSAIPDDPELPVLLQQVRPIHAVVHVDYFLPGCPPSADAF 170 >gi|307721230|ref|YP_003892370.1| hydrogenase (NiFe) small subunit HydA [Sulfurimonas autotrophica DSM 16294] gi|306979323|gb|ADN09358.1| hydrogenase (NiFe) small subunit HydA [Sulfurimonas autotrophica DSM 16294] Length = 807 Score = 40.7 bits (94), Expect = 0.090, Method: Composition-based stats. Identities = 22/92 (23%), Positives = 35/92 (38%), Gaps = 15/92 (16%) Query: 95 VMIVAGTLTNKMASALRRVY-----------DQMPEPRYVISMGSCANGGGYYHYSYS-- 141 ++IV G + M RV + VI++GSCA GG S + Sbjct: 603 ILIVEGAVPMAMDGKFLRVGPKGETGIELLQKCANDAALVIAVGSCAFDGGVVAASPNPT 662 Query: 142 -VVRGCDRIVPVDI-YVPGCPPTAEALIYGIL 171 V + D+ +PGCP ++ +L Sbjct: 663 GAVGVAQALKREDVINIPGCPTNPTNIVGTLL 694 >gi|87303133|ref|ZP_01085931.1| hydrogenase small subunit [Synechococcus sp. WH 5701] gi|87282300|gb|EAQ74260.1| hydrogenase small subunit [Synechococcus sp. WH 5701] Length = 188 Score = 40.7 bits (94), Expect = 0.090, Method: Composition-based stats. Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 3/33 (9%) Query: 143 VRGCDRIVPVDIYVPGCPPTAE---ALIYGILL 172 V +VPVD+++PGCPP AE A++ +L Sbjct: 141 VLPVHELVPVDLFLPGCPPPAERIRAVLDALLR 173 >gi|222445297|ref|ZP_03607812.1| hypothetical protein METSMIALI_00925 [Methanobrevibacter smithii DSM 2375] gi|261350142|ref|ZP_05975559.1| f420-non-reducing hydrogenase subunit G [Methanobrevibacter smithii DSM 2374] gi|222434862|gb|EEE42027.1| hypothetical protein METSMIALI_00925 [Methanobrevibacter smithii DSM 2375] gi|288860928|gb|EFC93226.1| f420-non-reducing hydrogenase subunit G [Methanobrevibacter smithii DSM 2374] Length = 308 Score = 40.7 bits (94), Expect = 0.095, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 45/118 (38%), Gaps = 40/118 (33%) Query: 94 DVMIVAGTL-TNKMASALRRVYDQMPEPRYVISMGSCANGGGY----------------Y 136 DV+IV G + + + + + + VI+ G+C+ GG Y Sbjct: 56 DVLIVEGGIRNEENRELAEMLNE---KAKLVIAYGTCSCYGGIPGLGNLWTVDELEQEAY 112 Query: 137 HYSYSVVRGCDRIVP-------------------VDIYVPGCPPTAEALIYGILLLQK 175 S S V + I+P VD+ +PGCPP ++ + +L L + Sbjct: 113 INSCSTVNP-EGIIPNEDVPALESRVRPLSSAMDVDLIIPGCPPRSDVVAEAVLTLLR 169 >gi|119510365|ref|ZP_01629500.1| hydrogenase small subunit [Nodularia spumigena CCY9414] gi|119465002|gb|EAW45904.1| hydrogenase small subunit [Nodularia spumigena CCY9414] Length = 181 Score = 40.7 bits (94), Expect = 0.095, Method: Composition-based stats. Identities = 26/111 (23%), Positives = 41/111 (36%), Gaps = 36/111 (32%) Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY-------------- 135 P+ DV++V G + L+ ++ R ++S G CA G Sbjct: 49 PQGVDVVLVEGAV--ANEDHLQMIHQVRERSRILVSFGDCAVTGNVTALRNPLGSAEPVL 106 Query: 136 ---YHYSYSVVR-----------------GCDRIVPVDIYVPGCPPTAEAL 166 Y + + +IVPVDIY+PGCPP+A + Sbjct: 107 QRCYIEAADIHGQIPHEPGIVPTLLDRVVPVHKIVPVDIYMPGCPPSATRI 157 >gi|75910855|ref|YP_325151.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Anabaena variabilis ATCC 29413] gi|75704580|gb|ABA24256.1| NAD(P)-dependent nickel-iron dehydrogenase subunit HoxY [Anabaena variabilis ATCC 29413] Length = 181 Score = 40.7 bits (94), Expect = 0.099, Method: Composition-based stats. Identities = 18/35 (51%), Positives = 22/35 (62%), Gaps = 1/35 (2%) Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGIL-LLQKK 176 V IVPVDIY+PGCPP+A + + LLQ K Sbjct: 134 VTPVHSIVPVDIYLPGCPPSATRIRAALEPLLQGK 168 >gi|315504986|ref|YP_004083873.1| hypothetical protein ML5_4220 [Micromonospora sp. L5] gi|315411605|gb|ADU09722.1| hypothetical protein ML5_4220 [Micromonospora sp. L5] Length = 532 Score = 40.3 bits (93), Expect = 0.11, Method: Composition-based stats. Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 4/57 (7%) Query: 76 RYDLERF----GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGS 128 R +ER G+ SP ++D++ V G +++A L R+++QMP PR I + S Sbjct: 29 RAAVERHVLARGWRLALSPAEADILAVCGPPPSQLAEPLHRLWEQMPGPRARIDVES 85 >gi|257053168|ref|YP_003131001.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Halorhabdus utahensis DSM 12940] gi|256691931|gb|ACV12268.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Halorhabdus utahensis DSM 12940] Length = 191 Score = 40.3 bits (93), Expect = 0.12, Method: Composition-based stats. Identities = 14/32 (43%), Positives = 19/32 (59%) Query: 144 RGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175 R D + VD+YVPGCPP AE + + L + Sbjct: 146 RPLDEYIDVDVYVPGCPPDAEVMKESLEALAR 177 >gi|1032479|emb|CAA55876.1| hydrogenase small subunit [Anabaena variabilis ATCC 29413] Length = 205 Score = 40.3 bits (93), Expect = 0.12, Method: Composition-based stats. Identities = 18/35 (51%), Positives = 22/35 (62%), Gaps = 1/35 (2%) Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGIL-LLQKK 176 V IVPVDIY+PGCPP+A + + LLQ K Sbjct: 158 VTPVHSIVPVDIYLPGCPPSATRIRAALEPLLQGK 192 >gi|288941584|ref|YP_003443824.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Allochromatium vinosum DSM 180] gi|288896956|gb|ADC62792.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Allochromatium vinosum DSM 180] Length = 180 Score = 40.3 bits (93), Expect = 0.12, Method: Composition-based stats. Identities = 14/31 (45%), Positives = 21/31 (67%) Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLL 173 V+ V VD++VPGCPP+A+A+ Y + L Sbjct: 134 VKPVHGEVKVDVFVPGCPPSADAIWYVLSEL 164 >gi|46580326|ref|YP_011134.1| periplasmic [NiFeSe] hydrogenase small subunit [Desulfovibrio vulgaris str. Hildenborough] gi|120602295|ref|YP_966695.1| hydrogenase (NiFe) small subunit HydA [Desulfovibrio vulgaris DP4] gi|284449405|pdb|2WPN|A Chain A, Structure Of The Oxidised, As-Isolated Nifese Hydrogenase From D. Vulgaris Hildenborough gi|46449743|gb|AAS96393.1| periplasmic [NiFeSe] hydrogenase, small subunit [Desulfovibrio vulgaris str. Hildenborough] gi|120562524|gb|ABM28268.1| hydrogenase (NiFe) small subunit HydA [Desulfovibrio vulgaris DP4] gi|311233694|gb|ADP86548.1| hydrogenase (NiFe) small subunit HydA [Desulfovibrio vulgaris RCH1] Length = 317 Score = 40.3 bits (93), Expect = 0.12, Method: Composition-based stats. Identities = 23/110 (20%), Positives = 46/110 (41%), Gaps = 11/110 (10%) Query: 82 FGFAPRASPRQSDV-MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSY 140 F + P ++D + G + S + + + P V+++G+CA GG Sbjct: 107 FLVIEGSVPVEADGKYCIIGEANHHEISMVDALKEFGPNAAAVLAVGTCAAYGGIPAAEG 166 Query: 141 SVVRG--CDRIV-------PVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181 S + + PV + +PGCPP + ++ ++L I++ G Sbjct: 167 SETGATAVSKFLGDNGIKTPV-VNIPGCPPHPDWIVGTVVLALDAIKKNG 215 >gi|288561163|ref|YP_003424649.1| methyl viologen-reducing hydrogenase gamma subunit MvhG [Methanobrevibacter ruminantium M1] gi|288543873|gb|ADC47757.1| methyl viologen-reducing hydrogenase gamma subunit MvhG [Methanobrevibacter ruminantium M1] Length = 308 Score = 40.3 bits (93), Expect = 0.13, Method: Composition-based stats. Identities = 35/168 (20%), Positives = 61/168 (36%), Gaps = 49/168 (29%) Query: 50 ARTGSLMWMTFGLACCA---VEMMQASMPRYDLERFGFAPR------ASPRQSDVMIVAG 100 A+ G++ G + C + ++ + +L +F F+P + DV+IV G Sbjct: 5 AKVGTMW--LGGCSGCHLSIADFHESLLDVLELAQFEFSPVLCDTKYDEVPELDVLIVEG 62 Query: 101 TL-TNKMASALRRVYDQMPEPRYVISMGSCANGGGY----------------YHYSYSVV 143 + + + + + VI+ G+CA GG Y S S V Sbjct: 63 GIRNEENRELAEMLRE---KAGLVIAYGTCAAYGGIPGLGNLHTVEELTTEGYINSCSTV 119 Query: 144 ------------------RGCDRIVPVDIYVPGCPPTAEALIYGILLL 173 R + VD+ +PGCPP ++ + IL L Sbjct: 120 NPEGIIPNEDVPTLESRVRPLGEAIQVDLLIPGCPPKSDVVAEAILTL 167 >gi|212223198|ref|YP_002306434.1| Sulfhydrogenase II, delta chain [Thermococcus onnurineus NA1] gi|212008155|gb|ACJ15537.1| Sulfhydrogenase II, delta chain [Thermococcus onnurineus NA1] Length = 246 Score = 40.3 bits (93), Expect = 0.13, Method: Composition-based stats. Identities = 23/89 (25%), Positives = 37/89 (41%), Gaps = 22/89 (24%) Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY---------------Y 136 DV +V GT++++ AL + + Y+I++G+CA G Y Sbjct: 52 HYDVALVTGTVSSQRDLALLK--EARNHSDYLIALGTCATHGSVQASVEGSIREKLKRVY 109 Query: 137 HYSYSVVRGCD-----RIVPVDIYVPGCP 160 + +R D V VD +PGCP Sbjct: 110 GDEGNPMRALDSKPVVEYVAVDFALPGCP 138 >gi|189501050|ref|YP_001960520.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Chlorobium phaeobacteroides BS1] gi|189496491|gb|ACE05039.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Chlorobium phaeobacteroides BS1] Length = 254 Score = 39.9 bits (92), Expect = 0.14, Method: Composition-based stats. Identities = 21/92 (22%), Positives = 36/92 (39%), Gaps = 21/92 (22%) Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY------YHYSYSV----- 142 D+ +V G++T + + +++ GSCA GG + +V Sbjct: 59 DIALVEGSITRQDEVERLETIR--KNAKVLVAYGSCACFGGVNSLKNNFPLDQAVREVYG 116 Query: 143 --------VRGCDRIVPVDIYVPGCPPTAEAL 166 VR +V VD +PGCP + E + Sbjct: 117 DKSVDTLPVRKISDVVKVDYSIPGCPVSKEEV 148 >gi|289432499|ref|YP_003462372.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Dehalococcoides sp. GT] gi|288946219|gb|ADC73916.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Dehalococcoides sp. GT] Length = 312 Score = 39.9 bits (92), Expect = 0.14, Method: Composition-based stats. Identities = 22/108 (20%), Positives = 41/108 (37%), Gaps = 35/108 (32%) Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY---------------- 135 ++D+ I+ G + + + + + ++++G+CA GG Sbjct: 60 EADLGIITGGI--RNEENRELALEMRKKCKIIVALGTCACFGGIPALANLSTTEEMMEQI 117 Query: 136 YH--------YSYS---------VVRGCDRIVPVDIYVPGCPPTAEAL 166 Y S S V D ++ VDI++PGCPPT + Sbjct: 118 YSKEKGTEKSDSPSDKSLPKMLDRVYAVDEMIKVDIHLPGCPPTPAHI 165 >gi|297619112|ref|YP_003707217.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanococcus voltae A3] gi|297378089|gb|ADI36244.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanococcus voltae A3] Length = 303 Score = 39.9 bits (92), Expect = 0.14, Method: Composition-based stats. Identities = 23/126 (18%), Positives = 41/126 (32%), Gaps = 36/126 (28%) Query: 84 FAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY--YHYSYS 141 + P DV ++ G + + L + + + V++ G+CA GG YS Sbjct: 42 MDVKEIPNDIDVALIEGGI--RNEENLHTAKEMRKKAKIVVAFGTCAVYGGIPGMGNLYS 99 Query: 142 V--------------------------------VRGCDRIVPVDIYVPGCPPTAEALIYG 169 V +++ VD +PGCPP E + Sbjct: 100 NEEILEKAYKTTLTTKNDEGIIPNEEVPPLTSRVVPLSQVIDVDYILPGCPPKPELIASV 159 Query: 170 ILLLQK 175 + L + Sbjct: 160 LTALLE 165 >gi|84489136|ref|YP_447368.1| MvhG [Methanosphaera stadtmanae DSM 3091] gi|84372455|gb|ABC56725.1| MvhG [Methanosphaera stadtmanae DSM 3091] Length = 305 Score = 39.9 bits (92), Expect = 0.14, Method: Composition-based stats. Identities = 33/163 (20%), Positives = 57/163 (34%), Gaps = 53/163 (32%) Query: 60 FGLACCAV---EMMQASMPRYDLERFGFAPR------ASPRQSDVMIVAGTL----TNKM 106 G + C + ++ + + D+ F F+P D++ + G + ++ Sbjct: 13 GGCSGCHIALTDLHELLLDVLDVAEFEFSPVLMDTKYDEIPHMDIIFIEGGIRNEENREL 72 Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGY----------------YHYSYSVV------- 143 A LR + V++ GSCA GG Y S S V Sbjct: 73 AEVLRE------KADMVVAYGSCAEFGGIPGLGNLYTPEELEEEAYLNSCSTVNPDGIIP 126 Query: 144 -----------RGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175 R ++ VD +PGCPP +E + ++ L K Sbjct: 127 SESVPHLESRVRPLADVIKVDAALPGCPPKSEVIAQVVIALVK 169 >gi|325294937|ref|YP_004281451.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065385|gb|ADY73392.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfurobacterium thermolithotrophum DSM 11699] Length = 261 Score = 39.9 bits (92), Expect = 0.15, Method: Composition-based stats. Identities = 29/149 (19%), Positives = 53/149 (35%), Gaps = 35/149 (23%) Query: 61 GLACCAVEMMQASMPRYDLERFGFAPR---------ASPRQSDVMIVAGTLTNKMASALR 111 G + C E++ Y L G S + D++ V G++T + Sbjct: 11 GCSGCQCEILNCKDALYKL--LGKVEFCYFPLAQDNNSFEEFDILFVEGSVTTDLDE--E 66 Query: 112 RVYDQMPEPRYVISMGSCANGGGY----------------------YHYSYSVVRGCDRI 149 +V + ++++GSCA GG + + S + I Sbjct: 67 KVKKGRKVSKILVAIGSCACYGGVQAQRNDEVTLEEMLKEVYGTTEFPVNVSKPKAVSEI 126 Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIR 178 V VD +PGCP + +Y + L ++ Sbjct: 127 VKVDYELPGCPLDKKQFVYAVAFLLNGVK 155 >gi|94266349|ref|ZP_01290050.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [delta proteobacterium MLMS-1] gi|93453063|gb|EAT03545.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [delta proteobacterium MLMS-1] Length = 362 Score = 39.9 bits (92), Expect = 0.16, Method: Composition-based stats. Identities = 11/34 (32%), Positives = 17/34 (50%) Query: 140 YSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLL 173 Y V+ +V VD ++PGCPP + + L Sbjct: 148 YDRVQTLADVVAVDFFIPGCPPEPPRIWQAVESL 181 >gi|94266316|ref|ZP_01290018.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [delta proteobacterium MLMS-1] gi|93453070|gb|EAT03549.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [delta proteobacterium MLMS-1] Length = 74 Score = 39.9 bits (92), Expect = 0.16, Method: Composition-based stats. Identities = 12/42 (28%), Positives = 27/42 (64%), Gaps = 2/42 (4%) Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGI--LLLQKKIRRVGNVK 184 +++ VD+++PGCPP A A++ + +L Q+++ + +K Sbjct: 31 PLHQVIRVDLFLPGCPPPAAAIVQALNAVLAQQELSELPTLK 72 >gi|94263615|ref|ZP_01287425.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [delta proteobacterium MLMS-1] gi|93456035|gb|EAT06186.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [delta proteobacterium MLMS-1] Length = 366 Score = 39.9 bits (92), Expect = 0.17, Method: Composition-based stats. Identities = 11/34 (32%), Positives = 17/34 (50%) Query: 140 YSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLL 173 Y V+ +V VD ++PGCPP + + L Sbjct: 148 YDRVQTLADVVAVDFFIPGCPPEPPRIWQAVESL 181 >gi|94270483|ref|ZP_01291756.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [delta proteobacterium MLMS-1] gi|93450778|gb|EAT01830.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [delta proteobacterium MLMS-1] Length = 366 Score = 39.9 bits (92), Expect = 0.17, Method: Composition-based stats. Identities = 11/34 (32%), Positives = 17/34 (50%) Query: 140 YSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLL 173 Y V+ +V VD ++PGCPP + + L Sbjct: 148 YDRVQTLADVVAVDFFIPGCPPEPPRIWQAVESL 181 >gi|327401725|ref|YP_004342564.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Archaeoglobus veneficus SNP6] gi|327317233|gb|AEA47849.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Archaeoglobus veneficus SNP6] Length = 317 Score = 39.9 bits (92), Expect = 0.17, Method: Composition-based stats. Identities = 11/23 (47%), Positives = 17/23 (73%) Query: 140 YSVVRGCDRIVPVDIYVPGCPPT 162 Y V+ D ++ VD++VPGCPP+ Sbjct: 143 YESVKPLDAVIDVDLFVPGCPPS 165 >gi|295107009|emb|CBL04552.1| hydrogenase (NiFe) small subunit (hydA) [Gordonibacter pamelaeae 7-10-1-b] Length = 415 Score = 39.9 bits (92), Expect = 0.18, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 34/80 (42%), Gaps = 11/80 (13%) Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCD-------RIVPVDI-YVPG 158 + + + V+++GSCA GG+ + + VD+ +PG Sbjct: 134 KPGTEHLIEAAEKANAVVALGSCAVNGGWMGAHPNSSGALGVQQFLEKAGIDVDVINIPG 193 Query: 159 CPPTAE---ALIYGILLLQK 175 CP E +++ +++L+K Sbjct: 194 CPANPEWLVSVLVDVIMLEK 213 >gi|307246251|ref|ZP_07528332.1| Hydrogenase-2 small chain [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307255235|ref|ZP_07537050.1| Hydrogenase-2 small chain [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307259669|ref|ZP_07541393.1| Hydrogenase-2 small chain [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306852860|gb|EFM85084.1| Hydrogenase-2 small chain [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306861784|gb|EFM93763.1| Hydrogenase-2 small chain [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306866314|gb|EFM98178.1| Hydrogenase-2 small chain [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 361 Score = 39.9 bits (92), Expect = 0.18, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 28/68 (41%), Gaps = 4/68 (5%) Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGY--YHYSYSVVRGCDRIVP--VDIYVPGCPPT 162 L + + + +I++GSCA GG + + I+P I +PGCPP Sbjct: 117 KPVLEHIKEAAKDAMAIIAIGSCAAWGGVPSSGNNPTGASSLSDILPGMPIINIPGCPPN 176 Query: 163 AEALIYGI 170 + I Sbjct: 177 PHNFLATI 184 >gi|190150651|ref|YP_001969176.1| hydrogenase-2 small chain precursor [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|307263999|ref|ZP_07545600.1| Hydrogenase-2 small chain [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|189915782|gb|ACE62034.1| hydrogenase-2 small chain precursor [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|306870688|gb|EFN02431.1| Hydrogenase-2 small chain [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 380 Score = 39.5 bits (91), Expect = 0.18, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 4/65 (6%) Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGY--YHYSYSVVRGCDRIVP--VDIYVPGCPPT 162 L + + + +I++GSCA GG + + I+P I +PGCPP Sbjct: 136 KPVLEHIKEAAKDAMAIIAIGSCAAWGGVPSSGNNPTGASSLSDILPGMPIINIPGCPPN 195 Query: 163 AEALI 167 + Sbjct: 196 PHNFL 200 >gi|307261817|ref|ZP_07543482.1| Hydrogenase-2 small chain [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306868481|gb|EFN00293.1| Hydrogenase-2 small chain [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 380 Score = 39.5 bits (91), Expect = 0.19, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 4/65 (6%) Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGY--YHYSYSVVRGCDRIVP--VDIYVPGCPPT 162 L + + + +I++GSCA GG + + I+P I +PGCPP Sbjct: 136 KPVLEHIKEAAKDAMAIIAIGSCAAWGGVPSSGNNPTGASSLSDILPGMPIINIPGCPPN 195 Query: 163 AEALI 167 + Sbjct: 196 PHNFL 200 >gi|53803148|ref|YP_115126.1| NAD-reducing hydrogenase subunit delta [Methylococcus capsulatus str. Bath] gi|53756909|gb|AAU91200.1| NAD-reducing hydrogenase, delta subunit [Methylococcus capsulatus str. Bath] Length = 180 Score = 39.5 bits (91), Expect = 0.19, Method: Composition-based stats. Identities = 28/144 (19%), Positives = 53/144 (36%), Gaps = 39/144 (27%) Query: 60 FGLACCAVEMMQASMPRYDLERFGFAPRASPRQS----DVMIVAGTLTNKMASALRRVYD 115 FG +++ + + ++ RF +P + D+ +V G + N A + + + Sbjct: 16 FGCHMSFLDIDERILALAEVARFDRSPLTDIKHCRDRVDLGLVEGGVCN--AENVHTLRE 73 Query: 116 QMPEPRYVISMGSCANGGGY----------------YHYSYSV----------------- 142 R ++++G+CA GG Y V Sbjct: 74 FRRHCRILVAVGACAINGGLPTLRNPIALEECLQEAYRDGIGVENPQIPDDVELPLLLDK 133 Query: 143 VRGCDRIVPVDIYVPGCPPTAEAL 166 V +V VD +PGCPP+A+ + Sbjct: 134 VHPIHEVVRVDYSLPGCPPSADVI 157 >gi|165976756|ref|YP_001652349.1| hydrogenase 2 small subunit [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|303250583|ref|ZP_07336780.1| hydrogenase 2 small subunit [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|303253087|ref|ZP_07339237.1| hydrogenase 2 small subunit [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307248364|ref|ZP_07530387.1| Hydrogenase-2 small chain [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|307250590|ref|ZP_07532532.1| Hydrogenase-2 small chain [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|307252971|ref|ZP_07534859.1| Hydrogenase-2 small chain [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307257397|ref|ZP_07539167.1| Hydrogenase-2 small chain [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|165876857|gb|ABY69905.1| Ni, Fe-hydrogenase I small subunit [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|302648072|gb|EFL78278.1| hydrogenase 2 small subunit [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|302650571|gb|EFL80730.1| hydrogenase 2 small subunit [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306855102|gb|EFM87282.1| Hydrogenase-2 small chain [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306857406|gb|EFM89520.1| Hydrogenase-2 small chain [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306859609|gb|EFM91634.1| Hydrogenase-2 small chain [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306864247|gb|EFM96160.1| Hydrogenase-2 small chain [Actinobacillus pleuropneumoniae serovar 10 str. D13039] Length = 380 Score = 39.5 bits (91), Expect = 0.19, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 4/65 (6%) Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGY--YHYSYSVVRGCDRIVP--VDIYVPGCPPT 162 L + + + +I++GSCA GG + + I+P I +PGCPP Sbjct: 136 KPVLEHIKEAAKDAMAIIAIGSCAAWGGVPSSGNNPTGASSLSDILPGMPIINIPGCPPN 195 Query: 163 AEALI 167 + Sbjct: 196 PHNFL 200 >gi|73748452|ref|YP_307691.1| hydrogenase, group 3, VhuG subunit [Dehalococcoides sp. CBDB1] gi|147669232|ref|YP_001214050.1| F420-non-reducing hydrogenase subunit G [Dehalococcoides sp. BAV1] gi|73660168|emb|CAI82775.1| hydrogenase, group 3, VhuG subunit [Dehalococcoides sp. CBDB1] gi|146270180|gb|ABQ17172.1| F420-non-reducing hydrogenase subunit G [Dehalococcoides sp. BAV1] Length = 312 Score = 39.5 bits (91), Expect = 0.19, Method: Composition-based stats. Identities = 22/105 (20%), Positives = 40/105 (38%), Gaps = 35/105 (33%) Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY---------------- 135 ++D+ I+ G + + + + + ++++G+CA GG Sbjct: 60 EADLGIITGGI--RNEENRELALEMRKKCKIIVALGTCACFGGIPALANLSTTEEMMEQI 117 Query: 136 YH--------YSYS---------VVRGCDRIVPVDIYVPGCPPTA 163 Y S S V D ++ VDI++PGCPPT Sbjct: 118 YSKEKGTEKSDSPSDKSLPKMLDRVYAVDEMIKVDIHLPGCPPTP 162 >gi|126208795|ref|YP_001054020.1| hydrogenase 2 small subunit [Actinobacillus pleuropneumoniae L20] gi|126097587|gb|ABN74415.1| hydrogenase-2 small chain precursor [Actinobacillus pleuropneumoniae serovar 5b str. L20] Length = 380 Score = 39.5 bits (91), Expect = 0.20, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 4/65 (6%) Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGY--YHYSYSVVRGCDRIVP--VDIYVPGCPPT 162 L + + + +I++GSCA GG + + I+P I +PGCPP Sbjct: 136 KPVLEHIKEAAKDAMAIIAIGSCAAWGGVPSSGNNPTGASSLSDILPGMPIINIPGCPPN 195 Query: 163 AEALI 167 + Sbjct: 196 PHNFL 200 >gi|53728952|ref|ZP_00134401.2| COG1740: Ni,Fe-hydrogenase I small subunit [Actinobacillus pleuropneumoniae serovar 1 str. 4074] Length = 361 Score = 39.5 bits (91), Expect = 0.20, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 4/65 (6%) Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGY--YHYSYSVVRGCDRIVP--VDIYVPGCPPT 162 L + + + +I++GSCA GG + + I+P I +PGCPP Sbjct: 117 KPVLEHIKEAAKDAMAIIAIGSCAAWGGVPSSGNNPTGASSLSDILPGMPIINIPGCPPN 176 Query: 163 AEALI 167 + Sbjct: 177 PHNFL 181 >gi|325958127|ref|YP_004289593.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanobacterium sp. AL-21] gi|325329559|gb|ADZ08621.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanobacterium sp. AL-21] Length = 309 Score = 39.5 bits (91), Expect = 0.21, Method: Composition-based stats. Identities = 28/128 (21%), Positives = 45/128 (35%), Gaps = 44/128 (34%) Query: 84 FAPRASPRQSDVMIVAGTL----TNKMASALRRVYDQMPEPRYVISMGSCANGGGY---- 135 P DV+I+ G + ++A LR + ++VI+ G CA GG Sbjct: 47 VKYDEVPDDLDVLIIEGGIRNDENRELAEMLR------KKAKFVIAYGVCAVYGGIPGLG 100 Query: 136 ------------YHYSYSV------------------VRGCDRIVPVDIYVPGCPPTAEA 165 Y S S VR ++ VD+ +PGCP ++ Sbjct: 101 NLHTADELAQEAYVNSASTYNEEGIIPNEDIPHLESRVRPLSDVIDVDLSIPGCPTRSDV 160 Query: 166 LIYGILLL 173 L ++ L Sbjct: 161 LAEALVAL 168 >gi|195953772|ref|YP_002122062.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Hydrogenobaculum sp. Y04AAS1] gi|195933384|gb|ACG58084.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Hydrogenobaculum sp. Y04AAS1] Length = 294 Score = 39.5 bits (91), Expect = 0.21, Method: Composition-based stats. Identities = 22/104 (21%), Positives = 39/104 (37%), Gaps = 23/104 (22%) Query: 94 DVMIVAGTLTNKMASALRRVYDQM-----PEPRYVISMGSCANGGGY------------- 135 D++IV G + + + + + +YVI++G CA+ GG Sbjct: 58 DILIVEGAIGKSIRHVCSYSFSNIVKILSSKAKYVIALGDCASFGGIHAKAGTHITGLQF 117 Query: 136 -YHYSYSVVRGCD---RIVPVDIYVPGCPPTAEALIYGILLLQK 175 + ++ PV I + GCP E + Y I L + Sbjct: 118 RFKEFGGLLGKAFLSKSSYPV-INIAGCPAHPEWVYYVISALLE 160 >gi|114777305|ref|ZP_01452316.1| NAD-reducing hydrogenase, delta subunit [Mariprofundus ferrooxydans PV-1] gi|114552450|gb|EAU54933.1| NAD-reducing hydrogenase, delta subunit [Mariprofundus ferrooxydans PV-1] Length = 160 Score = 39.5 bits (91), Expect = 0.21, Method: Composition-based stats. Identities = 26/116 (22%), Positives = 43/116 (37%), Gaps = 35/116 (30%) Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY----------------Y 136 D+ ++ G L N A + + + + +I++G+CA GG Y Sbjct: 33 CDIGLIEGGLCN--ADNVHVLKEFRENCKIIIAVGACAINGGVPAMRNHFTLKECLEEAY 90 Query: 137 HYSYSV-----------------VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175 V V +V VD Y+PGCPP A+A + + L + Sbjct: 91 LDGIGVENPMIPNDVELPLLLSKVHPLHEVVHVDYYLPGCPPPADAFMKVLTDLLE 146 >gi|289522158|ref|ZP_06439012.1| NAD-reducing hydrogenase, delta subunit [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289503994|gb|EFD25158.1| NAD-reducing hydrogenase, delta subunit [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 179 Score = 39.5 bits (91), Expect = 0.22, Method: Composition-based stats. Identities = 14/29 (48%), Positives = 17/29 (58%) Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILLL 173 D V VD+YVPGCPP A+ + Y L Sbjct: 135 PLDYEVKVDVYVPGCPPDADTIYYVFKEL 163 >gi|17228259|ref|NP_484807.1| hydrogenase small subunit [Nostoc sp. PCC 7120] gi|17130109|dbj|BAB72721.1| hydrogenase small subunit [Nostoc sp. PCC 7120] Length = 181 Score = 39.5 bits (91), Expect = 0.22, Method: Composition-based stats. Identities = 15/33 (45%), Positives = 20/33 (60%) Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175 V IVPVDIY+PGCPP+A + + L + Sbjct: 134 VTPVHSIVPVDIYLPGCPPSATRIRAALEPLLQ 166 >gi|1419378|emb|CAA56463.1| hydrogenase small beta subunit [Acetomicrobium flavidum] Length = 179 Score = 39.5 bits (91), Expect = 0.23, Method: Composition-based stats. Identities = 14/29 (48%), Positives = 17/29 (58%) Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILLL 173 D V VD+YVPGCPP A+ + Y L Sbjct: 135 PIDYEVKVDVYVPGCPPDADTIYYVFKEL 163 >gi|108802983|ref|YP_642920.1| Ni Fe-hydrogenase III large subunit-like protein [Rubrobacter xylanophilus DSM 9941] gi|108764226|gb|ABG03108.1| Ni Fe-hydrogenase III large subunit-like protein [Rubrobacter xylanophilus DSM 9941] Length = 540 Score = 39.5 bits (91), Expect = 0.23, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 26/55 (47%) Query: 78 DLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANG 132 D+E G PR + V++V G L + A VY QM PR V++ G+ Sbjct: 42 DVEAAGLGMTGVPRHASVLLVVGELPAALRRAAAVVYAQMMRPRAVLAAGAGDLS 96 >gi|14521156|ref|NP_126631.1| hydrogenase (cytochrome-c3 hydrogenase delta chain) [Pyrococcus abyssi GE5] gi|5458374|emb|CAB49862.1| Sulfhydrogenase II, delta chain [Pyrococcus abyssi GE5] Length = 241 Score = 39.1 bits (90), Expect = 0.26, Method: Composition-based stats. Identities = 26/87 (29%), Positives = 36/87 (41%), Gaps = 22/87 (25%) Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY---------------YHY 138 DV +V G+++ + L V D Y+I++G+CA GG Y Sbjct: 53 DVALVTGSVSTQ--RDLEVVKDARNRAEYLIALGTCATHGGVQGSIEGSVKEGLRKIYGD 110 Query: 139 --SYSVV---RGCDRIVPVDIYVPGCP 160 S V R VPVD +PGCP Sbjct: 111 MKGPSKVLEPRAVVEHVPVDFAIPGCP 137 >gi|323139688|ref|ZP_08074729.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methylocystis sp. ATCC 49242] gi|322395067|gb|EFX97627.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methylocystis sp. ATCC 49242] Length = 265 Score = 39.1 bits (90), Expect = 0.27, Method: Composition-based stats. Identities = 26/140 (18%), Positives = 46/140 (32%), Gaps = 37/140 (26%) Query: 52 TGSLMWMTFGLAC------CAVEMMQASMPRYDLERFGFAPRAS----PRQSDVMIVAGT 101 ++ C C E++ + D + P A+ D+ +V G+ Sbjct: 9 RLAVWKFASCDGCQLSLLDCEDEILAVA----DAVEIAYFPEATRAAISGHYDISLVEGS 64 Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGY---------------------YHYSY 140 +T R+Y+ +I++G+CA GG Y + Sbjct: 65 ITTPHD--AERIYEVRRRSSKLITIGACATSGGIQALRNFADVKEYVSIVYARPDYIDTL 122 Query: 141 SVVRGCDRIVPVDIYVPGCP 160 + VPVD + GCP Sbjct: 123 AASTPISDHVPVDFELRGCP 142 >gi|303245125|ref|ZP_07331441.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanothermococcus okinawensis IH1] gi|302484508|gb|EFL47456.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanothermococcus okinawensis IH1] Length = 300 Score = 39.1 bits (90), Expect = 0.28, Method: Composition-based stats. Identities = 27/126 (21%), Positives = 42/126 (33%), Gaps = 36/126 (28%) Query: 84 FAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY--YHYSYS 141 + P + D+ I+ G + NK + + VI+ G+CA GG YS Sbjct: 42 MDVKEIPDKVDIAIIEGGIRNK--ENEEIAKEMRKKADIVIAFGTCAAFGGVPGLGNLYS 99 Query: 142 V--------------------------------VRGCDRIVPVDIYVPGCPPTAEALIYG 169 V+ +I+ VD VPGCPP E Sbjct: 100 NEEILDKVYKTTLTTENEKGSIPNEEVPELTSRVKPLSQIIDVDFVVPGCPPEPEVTAKV 159 Query: 170 ILLLQK 175 + +L + Sbjct: 160 LTMLLE 165 >gi|62632272|gb|AAX89151.1| HoxY [Allochromatium vinosum] Length = 180 Score = 39.1 bits (90), Expect = 0.29, Method: Composition-based stats. Identities = 12/24 (50%), Positives = 18/24 (75%) Query: 143 VRGCDRIVPVDIYVPGCPPTAEAL 166 V+ V VD++VPGCPP+A+A+ Sbjct: 134 VKPVHGEVKVDVFVPGCPPSADAI 157 >gi|257092623|ref|YP_003166264.1| Hydrogen dehydrogenase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257045147|gb|ACV34335.1| Hydrogen dehydrogenase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 184 Score = 39.1 bits (90), Expect = 0.31, Method: Composition-based stats. Identities = 29/143 (20%), Positives = 53/143 (37%), Gaps = 38/143 (26%) Query: 60 FGL--ACCAVEMMQA-SMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQ 116 FG +C ++ + R D +R D+ ++ G + N A + + + Sbjct: 21 FGCHMSCLDIDERLLDLIERVDFDRSPLTDLKECGPCDIGLIEGGICN--AENIHVLREF 78 Query: 117 MPEPRYVISMGSCANGGG----------------YYHYSYSVVR-----------GCDRI 149 + +I++G+CA GG Y VV D++ Sbjct: 79 RRNCKVLIAIGACAVNGGLPAQRNHLDLGLCLQEVYLTGTGVVGGQIPNDPELPLPLDKV 138 Query: 150 VP------VDIYVPGCPPTAEAL 166 P VD ++PGCPP+ +A+ Sbjct: 139 HPIHEVVRVDYFIPGCPPSGDAI 161 >gi|83312494|ref|YP_422758.1| NAD-reducing hydrogenase moiety large subunit [Magnetospirillum magneticum AMB-1] gi|82947335|dbj|BAE52199.1| NAD-reducing hydrogenase hydrogenase moiety small subunit [Magnetospirillum magneticum AMB-1] Length = 183 Score = 38.8 bits (89), Expect = 0.32, Method: Composition-based stats. Identities = 24/109 (22%), Positives = 43/109 (39%), Gaps = 34/109 (31%) Query: 89 SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGG-------------- 134 SP D+ I+ G + N A + +++ + +I+MG+CA GG Sbjct: 55 SPD-CDLGIIEGGVCN--AENVHVLHEFRKNCKILIAMGACAINGGLPAQRNSLDIRDIL 111 Query: 135 --YYHYSY---------------SVVRGCDRIVPVDIYVPGCPPTAEAL 166 Y + V +V +D ++PGCPP+ +A+ Sbjct: 112 AAVYAQPGRGVHIPNDPEIPLLLNEVHPLHEVVKIDYFLPGCPPSGDAI 160 >gi|148643060|ref|YP_001273573.1| methyl viologen-reducing hydrogenase, gamma subunit, MvhG [Methanobrevibacter smithii ATCC 35061] gi|148552077|gb|ABQ87205.1| methyl viologen-reducing hydrogenase, gamma subunit, MvhG [Methanobrevibacter smithii ATCC 35061] Length = 308 Score = 38.8 bits (89), Expect = 0.32, Method: Composition-based stats. Identities = 25/118 (21%), Positives = 45/118 (38%), Gaps = 40/118 (33%) Query: 94 DVMIVAGTL-TNKMASALRRVYDQMPEPRYVISMGSCANGGGY----------------Y 136 DV+IV G + + + + + + VI+ G+C+ GG Y Sbjct: 56 DVLIVEGGIRNEENRELAEMLNE---KAKLVIAYGTCSCYGGIPGLGNLWTVDELEQEAY 112 Query: 137 HYSYSVVRGCDRIVP-------------------VDIYVPGCPPTAEALIYGILLLQK 175 S S V + I+P +D+ +PGCPP ++ + +L L + Sbjct: 113 INSCSTVNP-EGIIPNEDVPALESRVRPLSSAMDIDLIIPGCPPRSDVVAEAVLTLLR 169 >gi|163846762|ref|YP_001634806.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Chloroflexus aurantiacus J-10-fl] gi|222524576|ref|YP_002569047.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Chloroflexus sp. Y-400-fl] gi|163668051|gb|ABY34417.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Chloroflexus aurantiacus J-10-fl] gi|222448455|gb|ACM52721.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Chloroflexus sp. Y-400-fl] Length = 177 Score = 38.8 bits (89), Expect = 0.32, Method: Composition-based stats. Identities = 27/85 (31%), Positives = 38/85 (44%), Gaps = 18/85 (21%) Query: 98 VAGTLTN------KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151 V G +T + L++VY + +PR VI + G V +I+P Sbjct: 88 VTGNVTALRNPLGPARTVLQQVYIEHGDPRGVI-----PHEPGIVPVLLDKVVPVHQIIP 142 Query: 152 VDIYVPGCPPTA-------EALIYG 169 VD Y+ GCPP+A EALI G Sbjct: 143 VDYYLSGCPPSAPRIRALLEALIEG 167 >gi|46202099|ref|ZP_00053778.2| COG1941: Coenzyme F420-reducing hydrogenase, gamma subunit [Magnetospirillum magnetotacticum MS-1] Length = 183 Score = 38.8 bits (89), Expect = 0.32, Method: Composition-based stats. Identities = 24/109 (22%), Positives = 43/109 (39%), Gaps = 34/109 (31%) Query: 89 SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGG-------------- 134 SP D+ I+ G + N A + +++ + +I+MG+CA GG Sbjct: 55 SPD-CDLGIIEGGVCN--AENVHVLHEFRKNCKILIAMGACAINGGLPAQRNSLDIRDIL 111 Query: 135 --YYHYSY---------------SVVRGCDRIVPVDIYVPGCPPTAEAL 166 Y + V +V +D ++PGCPP+ +A+ Sbjct: 112 AAVYAQPGRGVHIPNDPEIPLLLNEVHPLHEVVKIDYFLPGCPPSGDAI 160 >gi|320355403|ref|YP_004196742.1| hydrogenase (NiFe) small subunit HydA [Desulfobulbus propionicus DSM 2032] gi|320123905|gb|ADW19451.1| hydrogenase (NiFe) small subunit HydA [Desulfobulbus propionicus DSM 2032] Length = 364 Score = 38.8 bits (89), Expect = 0.35, Method: Composition-based stats. Identities = 20/94 (21%), Positives = 36/94 (38%), Gaps = 17/94 (18%) Query: 94 DVMIVAGTLTNKMA---------SALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR 144 +++V G + K L + + P VI++GSCA GG + Sbjct: 116 FILVVDGAIPVKDKGIYCQIAGKPVLDILNETAPLAAAVIAIGSCAAWGGVPSADPNPTG 175 Query: 145 GCD-------RIVPVDIYVPGCPPTAEALIYGIL 171 + +PV + +PGCPP + ++ Sbjct: 176 ATPVHTILKPKGIPV-VNIPGCPPNPYNFLSTVI 208 >gi|308751414|gb|ADO44897.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Hydrogenobacter thermophilus TK-6] Length = 226 Score = 38.8 bits (89), Expect = 0.35, Method: Composition-based stats. Identities = 29/131 (22%), Positives = 48/131 (36%), Gaps = 23/131 (17%) Query: 62 LACCAV---EMMQASMPRYDLERFGFAPRASPR------QSDVMIVAGTLTNKMASALRR 112 C + E+ RY LE+ + + D+ V G+++N R Sbjct: 11 CDGCQIVFFELEHML--RY-LEKLQVLYFLEAQSENHYGEFDISFVEGSVSN--REDEER 65 Query: 113 VYDQMPEPRYVISMGSCANGGGY-----YHYSYSVVRGCDRIVPVDIYVPGCPPTAEALI 167 + D ++++G+CA GG + D V VD +PGCP E ++ Sbjct: 66 ILDIRRRSGMLVAIGACAISGGVQSAGNF-EGIIKSEPIDAFVKVDYQLPGCPINKE-IL 123 Query: 168 YGILL--LQKK 176 L L K Sbjct: 124 ENFLKSILHGK 134 >gi|225175367|ref|ZP_03729362.1| hydrogenase (NiFe) small subunit HydA [Dethiobacter alkaliphilus AHT 1] gi|225169119|gb|EEG77918.1| hydrogenase (NiFe) small subunit HydA [Dethiobacter alkaliphilus AHT 1] Length = 344 Score = 38.8 bits (89), Expect = 0.36, Method: Composition-based stats. Identities = 25/102 (24%), Positives = 47/102 (46%), Gaps = 25/102 (24%) Query: 95 VMIVAGTLTNKM--------------ASALRRVYDQMPEPRYVISMGSCANGGGYYHYSY 140 +++V GT+ K +AL+ V + + R+VI++G+CA+ GG + S Sbjct: 80 ILVVEGTVPVKSNGLYSVVGWRNGEPLTALQAVQELGAKARHVIAVGTCASFGGPFAASP 139 Query: 141 SVVRGCDRIVPVD-------IYVPGCPPTAEALIYGILLLQK 175 + +PV I VPGCP + ++ ++ L + Sbjct: 140 NPTGS----LPVQSVLDNRVINVPGCPVNPDWMMGTLVHLIR 177 >gi|147919665|ref|YP_686591.1| coenzyme F420-reducing hydrogenase, gamma subunit [uncultured methanogenic archaeon RC-I] gi|110621987|emb|CAJ37265.1| coenzyme F420-reducing hydrogenase, gamma subunit [uncultured methanogenic archaeon RC-I] Length = 232 Score = 38.8 bits (89), Expect = 0.36, Method: Composition-based stats. Identities = 17/91 (18%), Positives = 36/91 (39%), Gaps = 12/91 (13%) Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS---------YSVVR 144 D++ V G + ++ + ++++ G C++ ++S + Sbjct: 53 DLLFVDGAACLQSKESVESLKKARENTGFLVAWGGCSSTATINNFSRGGQSPQPQHESFP 112 Query: 145 GCDRIVPVDIYVPGCPPTAEA---LIYGILL 172 R+V VD +VPG PP E +I + Sbjct: 113 QISRLVKVDAFVPGSPPGPEMAYNVIRAFVE 143 >gi|332295190|ref|YP_004437113.1| hydrogenase (NiFe) small subunit HydA [Thermodesulfobium narugense DSM 14796] gi|332178293|gb|AEE13982.1| hydrogenase (NiFe) small subunit HydA [Thermodesulfobium narugense DSM 14796] Length = 356 Score = 38.8 bits (89), Expect = 0.39, Method: Composition-based stats. Identities = 29/103 (28%), Positives = 43/103 (41%), Gaps = 11/103 (10%) Query: 71 QASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKM---ASALRRVYDQMPEPRYVISMG 127 P Y L G P A P + AGT+++ + + + VI++G Sbjct: 103 AMKTPGYVLVVEGSIPTADP----LFCTAGTMSDTNPARRPVVETLKEAYKNAAVVIALG 158 Query: 128 SCANGGGYYHYSYSVVRGCDRIV---PVDIYVPGCPPTAEALI 167 SCA+ GG + S RG IV V I +P CP + L+ Sbjct: 159 SCASWGGVVQATPSKGRGVSDIVGKEKV-INLPMCPCNPDHLV 200 >gi|20093707|ref|NP_613554.1| coenzyme F420-reducing hydrogenase, gamma subunit [Methanopyrus kandleri AV19] gi|19886595|gb|AAM01484.1| Coenzyme F420-reducing hydrogenase, gamma subunit [Methanopyrus kandleri AV19] Length = 304 Score = 38.8 bits (89), Expect = 0.41, Method: Composition-based stats. Identities = 9/28 (32%), Positives = 15/28 (53%) Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGI 170 VR ++ VD +PGCPP + + + Sbjct: 139 VRPLSDVIDVDYELPGCPPEPDLIADAV 166 >gi|13366096|dbj|BAB39386.1| bidirectional hydrogenase small subunit [Anabaena variabilis] Length = 181 Score = 38.4 bits (88), Expect = 0.42, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 47/120 (39%), Gaps = 39/120 (32%) Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY-------------- 135 P+ DV++V G + N + ++ + + ++S G CA G Sbjct: 49 PQGVDVVLVEGAVANNEHLEMIQIVRE--RSQILVSFGDCAVTGNVTALRNPLGGAETVL 106 Query: 136 ---YHYSYSVVRG-----------CDRIVPV------DIYVPGCPPTA---EALIYGILL 172 Y + + DR++PV D+Y+PGCPP A +A++ +L Sbjct: 107 QRCYIEAADIHNSIPHEPGIVPTLLDRVIPVHKVVAVDVYLPGCPPNATQIKAVLESLLK 166 >gi|46981403|gb|AAT07677.1| bidirectional hydrogenase small subunit [Lyngbya majuscula CCAP 1446/4] Length = 182 Score = 38.4 bits (88), Expect = 0.43, Method: Composition-based stats. Identities = 13/33 (39%), Positives = 21/33 (63%) Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175 VR +V VD+++PGCPP+A+ + I L + Sbjct: 135 VRPIHEVVDVDLFLPGCPPSADRIKAAIAPLLE 167 >gi|295696641|ref|YP_003589879.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Bacillus tusciae DSM 2912] gi|295412243|gb|ADG06735.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Bacillus tusciae DSM 2912] Length = 323 Score = 38.4 bits (88), Expect = 0.44, Method: Composition-based stats. Identities = 21/110 (19%), Positives = 40/110 (36%), Gaps = 31/110 (28%) Query: 94 DVMIVAGTL-----------TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142 D+++V GT+ T ++D + RYV+++G CA GG + Sbjct: 67 DILVVEGTVILGPNGTGRYNTMMDRPTKDWIWDLAHKARYVVAVGDCACWGGIVAIHPNP 126 Query: 143 VRGCD-------------------RIVPVDIYVPGCPPTAEALIYGILLL 173 +PV I +PGCP ++ + ++ + Sbjct: 127 TESIGLQYLRKEEGGFLGADFRSKAGLPV-INIPGCPAHSDWITQVLVAI 175 >gi|224368282|ref|YP_002602445.1| HysB [Desulfobacterium autotrophicum HRM2] gi|223690998|gb|ACN14281.1| HysB [Desulfobacterium autotrophicum HRM2] Length = 337 Score = 38.4 bits (88), Expect = 0.44, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 29/72 (40%), Gaps = 5/72 (6%) Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164 KMA ++ V + G+ G +V + D PV + +PGCPP + Sbjct: 175 KMAGSVLAVGTCAAYGGIPAAKGNLTQATGV----QNVFKKFDITTPV-VNIPGCPPHPD 229 Query: 165 ALIYGILLLQKK 176 ++ I L K Sbjct: 230 WIVGTIAHLLTK 241 >gi|197124674|ref|YP_002136625.1| methyl-viologen-reducing hydrogenase subunit delta [Anaeromyxobacter sp. K] gi|196174523|gb|ACG75496.1| methyl-viologen-reducing hydrogenase delta subunit [Anaeromyxobacter sp. K] Length = 486 Score = 38.4 bits (88), Expect = 0.46, Method: Composition-based stats. Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 3/30 (10%) Query: 145 GCDRIVPVDIYVPGCPPTA---EALIYGIL 171 +VPVD +PGCPP+ +A + +L Sbjct: 311 TLADVVPVDYTIPGCPPSPAVVQAALDALL 340 >gi|288817413|ref|YP_003431760.1| Ni,Fe-hydrogenase small subunit [Hydrogenobacter thermophilus TK-6] gi|152061268|dbj|BAF73686.1| Ni,Fe-hydrogenase small subunit [Hydrogenobacter thermophilus] gi|288786812|dbj|BAI68559.1| Ni,Fe-hydrogenase small subunit [Hydrogenobacter thermophilus TK-6] gi|308751020|gb|ADO44503.1| hydrogenase (NiFe) small subunit HydA [Hydrogenobacter thermophilus TK-6] Length = 345 Score = 38.4 bits (88), Expect = 0.50, Method: Composition-based stats. Identities = 28/135 (20%), Positives = 51/135 (37%), Gaps = 29/135 (21%) Query: 49 WARTGSLMWMTFGLACCAVEMMQASMPR---YDLE--RFGFAPRASPRQSDVMIVAGTLT 103 + R+ S++ L ++E + M Y E R + ++IV G+++ Sbjct: 66 FIRSTSILPSDVLLDYISLEYHETLMSPSGFYAEEAKREAIEKY---KGKYILIVEGSVS 122 Query: 104 NKMASA---------LRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD- 153 + + + + VI++GSCA+ GG H + VPV Sbjct: 123 PRNKGVYCTVSGKSNVELLKEAAQNAGLVIAVGSCASWGGIPHAEPNPTGA----VPVSQ 178 Query: 154 -------IYVPGCPP 161 + +PGCPP Sbjct: 179 ILGDRQVVNIPGCPP 193 >gi|116750954|ref|YP_847641.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Syntrophobacter fumaroxidans MPOB] gi|116700018|gb|ABK19206.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Syntrophobacter fumaroxidans MPOB] Length = 324 Score = 38.4 bits (88), Expect = 0.50, Method: Composition-based stats. Identities = 24/123 (19%), Positives = 42/123 (34%), Gaps = 42/123 (34%) Query: 86 PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY---------- 135 P +D+ IV+G + + L + R ++++G+CA GG Sbjct: 56 FIGIPE-ADIGIVSGGI--RNEEQLEVALKVRAQCRILVALGTCATHGGIPALMNRYSDE 112 Query: 136 --YHYSYSV------VRGCDRIVP--------------VDIYVPGCPPTAE-------AL 166 + Y + +VP VD+Y+ GCPP + L Sbjct: 113 DLFRRYYRTSETTEAAAPPNEVVPRFLDRTYALDEKARVDVYMAGCPPHPDYLGAMFRTL 172 Query: 167 IYG 169 + G Sbjct: 173 LDG 175 >gi|153007144|ref|YP_001381469.1| methyl-viologen-reducing hydrogenase delta subunit [Anaeromyxobacter sp. Fw109-5] gi|152030717|gb|ABS28485.1| methyl-viologen-reducing hydrogenase delta subunit [Anaeromyxobacter sp. Fw109-5] Length = 488 Score = 38.4 bits (88), Expect = 0.51, Method: Composition-based stats. Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 3/30 (10%) Query: 145 GCDRIVPVDIYVPGCPPTA---EALIYGIL 171 +VPVD VPGCPP+ +A + +L Sbjct: 313 PLADVVPVDYTVPGCPPSPALVQAALDALL 342 >gi|257053666|ref|YP_003131499.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Halorhabdus utahensis DSM 12940] gi|256692429|gb|ACV12766.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Halorhabdus utahensis DSM 12940] Length = 266 Score = 38.4 bits (88), Expect = 0.52, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 29/74 (39%), Gaps = 22/74 (29%) Query: 122 YVISMGSCANGGG----------------YYHY------SYSVVRGCDRIVPVDIYVPGC 159 V+++GSCA GG Y SY + R + ++ V+ +PGC Sbjct: 81 VVVALGSCAAFGGINALRNHQDFETVKERVYGEDADSITSYPIARPIEDVIEVEYEIPGC 140 Query: 160 PPTAEALIYGILLL 173 P E + + L Sbjct: 141 PIDREEFLGAVTAL 154 >gi|78357177|ref|YP_388626.1| hydrogenase (NiFe) small subunit (hydA) [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78219582|gb|ABB38931.1| hydrogenase (NiFe) small subunit (hydA) [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 294 Score = 38.4 bits (88), Expect = 0.53, Method: Composition-based stats. Identities = 22/113 (19%), Positives = 44/113 (38%), Gaps = 17/113 (15%) Query: 82 FGFAPRASPRQSDV-MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSY 140 F + P +D + G + +K S + D + V+++G+CA GG Sbjct: 84 FVVVEGSIPLAADGKYCIIGDIDHKEISIADAMRDIAAKSAAVLAVGTCAAYGGI----P 139 Query: 141 SVVRGCDRIVPVD------------IYVPGCPPTAEALIYGILLLQKKIRRVG 181 + V V + +PGCPP + ++ +++ I++ G Sbjct: 140 AAEGNLTEAVSVQQFFEQEGIKTPVVNIPGCPPHPDWIVGTVVVALDAIKKHG 192 >gi|220919394|ref|YP_002494698.1| methyl-viologen-reducing hydrogenase delta subunit [Anaeromyxobacter dehalogenans 2CP-1] gi|219957248|gb|ACL67632.1| methyl-viologen-reducing hydrogenase delta subunit [Anaeromyxobacter dehalogenans 2CP-1] Length = 489 Score = 38.0 bits (87), Expect = 0.54, Method: Composition-based stats. Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 3/30 (10%) Query: 145 GCDRIVPVDIYVPGCPPTA---EALIYGIL 171 +VPVD VPGCPP+ +A + +L Sbjct: 311 TLADVVPVDYTVPGCPPSPAVVQAALDALL 340 >gi|320354169|ref|YP_004195508.1| NAD(P)-dependent nickel-iron dehydrogenase subunit HoxY [Desulfobulbus propionicus DSM 2032] gi|320122671|gb|ADW18217.1| NAD(P)-dependent nickel-iron dehydrogenase subunit HoxY [Desulfobulbus propionicus DSM 2032] Length = 177 Score = 38.0 bits (87), Expect = 0.55, Method: Composition-based stats. Identities = 24/112 (21%), Positives = 40/112 (35%), Gaps = 33/112 (29%) Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY------------YH 137 P D + + G +++K V Q R++I+MG CA G Sbjct: 49 PEAVDAVCIEGAVSSKEDERKLVVARQ--RSRFLIAMGDCAVTGNVPAMRNVVGAERILR 106 Query: 138 YSYSVVRGCDRIVP-------------------VDIYVPGCPPTAEALIYGI 170 Y + ++P VD+++PGCPP A+ L + Sbjct: 107 SVYIDQDPLNPLIPADNLPVLNSKALPLHCFVQVDLFIPGCPPAADTLFAAL 158 >gi|288817816|ref|YP_003432163.1| NADH ubiquinone oxidoreductase 20 kDa subunit/hydrogenase [Hydrogenobacter thermophilus TK-6] gi|288787215|dbj|BAI68962.1| NADH ubiquinone oxidoreductase 20 kDa subunit/hydrogenase [Hydrogenobacter thermophilus TK-6] Length = 203 Score = 38.0 bits (87), Expect = 0.58, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 37/90 (41%), Gaps = 11/90 (12%) Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY-----YHYSYSVVRGCDR 148 D+ V G+++N R+ D ++++G+CA GG + D Sbjct: 26 DISFVEGSVSN--REDEERILDIRRRSGMLVAIGACAISGGVQSAGNF-EGIIKSEPIDA 82 Query: 149 IVPVDIYVPGCPPTAEALIYGILL--LQKK 176 V VD +PGCP E ++ L L K Sbjct: 83 FVKVDYQLPGCPINKE-ILENFLKSILHGK 111 >gi|325958397|ref|YP_004289863.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanobacterium sp. AL-21] gi|325329829|gb|ADZ08891.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanobacterium sp. AL-21] Length = 303 Score = 38.0 bits (87), Expect = 0.59, Method: Composition-based stats. Identities = 23/112 (20%), Positives = 40/112 (35%), Gaps = 36/112 (32%) Query: 84 FAPRASPRQSDVMIVAGTL-TNKMASALRRVYDQMPEPRYVISMGSCANGGGY------- 135 + P D+ IV+G++ + L + + + + VI+ G+CA GG Sbjct: 42 MDVKEIPENIDIAIVSGSVRNEENKERLEEIRE---KAKIVIAYGTCACYGGITCMADLY 98 Query: 136 ---------YHYSYSV--VRGCDRIVP--------------VDIYVPGCPPT 162 + + S +VP +D Y+PGCPP Sbjct: 99 SPEDVSNRSFKDNPSTESAPEPSEVVPKLLPIVHPAGDLALIDYYLPGCPPK 150 >gi|268590652|ref|ZP_06124873.1| hydrogenase-2 small chain [Providencia rettgeri DSM 1131] gi|291314045|gb|EFE54498.1| hydrogenase-2 small chain [Providencia rettgeri DSM 1131] Length = 372 Score = 38.0 bits (87), Expect = 0.63, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 30/72 (41%), Gaps = 6/72 (8%) Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGC--DRIVPVD---IYVPGCPP 161 + + + VI++GSCA+ GG + D+++ D I +PGCPP Sbjct: 135 KPIVEHIREVAEHAAAVIAIGSCASWGGVAAAGDNPTGAVGLDQVIK-DKTVINIPGCPP 193 Query: 162 TAEALIYGILLL 173 + + L Sbjct: 194 NPHNFLATVAHL 205 >gi|254172034|ref|ZP_04878710.1| cytosolic NiFe-hydrogenase, delta subunit [Thermococcus sp. AM4] gi|214033930|gb|EEB74756.1| cytosolic NiFe-hydrogenase, delta subunit [Thermococcus sp. AM4] Length = 264 Score = 38.0 bits (87), Expect = 0.63, Method: Composition-based stats. Identities = 18/99 (18%), Positives = 39/99 (39%), Gaps = 25/99 (25%) Query: 94 DVMIVAGTL-TNKMASALRRVYDQMPEPRYVISMGSCANGGGY----------------Y 136 D+ + G++ T + ++++ + + V+++GSCA GG Y Sbjct: 55 DIAFIEGSVSTEEEVELVKKIRE---NAKIVVAVGSCAVQGGVQSWEKDKPLEELWKTVY 111 Query: 137 HYS-----YSVVRGCDRIVPVDIYVPGCPPTAEALIYGI 170 + + + VD + GCPP + +Y + Sbjct: 112 GDGKVKFQPKMAEPVSKYIKVDYNIYGCPPEKKDFLYAL 150 >gi|315230301|ref|YP_004070737.1| sulfhydrogenase II subunit d [Thermococcus barophilus MP] gi|315183329|gb|ADT83514.1| sulfhydrogenase II subunit d [Thermococcus barophilus MP] Length = 263 Score = 38.0 bits (87), Expect = 0.65, Method: Composition-based stats. Identities = 19/98 (19%), Positives = 38/98 (38%), Gaps = 23/98 (23%) Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY----------------YH 137 D+ + G+++ K + V + + V+++GSCA GG Y Sbjct: 55 DIAFIEGSVSTK--EEIELVKKIREKAKIVVAVGSCAVHGGVQSWGKEKELEQLWKTVYG 112 Query: 138 YS-----YSVVRGCDRIVPVDIYVPGCPPTAEALIYGI 170 + ++ + VD + GCPP + +Y + Sbjct: 113 DGKVKFEPKMAEPVEKFIKVDYKLYGCPPEKKDFLYAL 150 >gi|315229834|ref|YP_004070270.1| sulfhydrogenase II subunit d [Thermococcus barophilus MP] gi|315182862|gb|ADT83047.1| sulfhydrogenase II subunit d [Thermococcus barophilus MP] Length = 245 Score = 38.0 bits (87), Expect = 0.66, Method: Composition-based stats. Identities = 30/124 (24%), Positives = 46/124 (37%), Gaps = 25/124 (20%) Query: 77 YDLERFGFAP-RASPRQSDVMIVAGTLTNK-MASALRRVYDQMPEPRYVISMGSCANGGG 134 YD++ F A DV IV GT++ + LR Y+I++G+CA G Sbjct: 33 YDIKEFHMASSFKEHDHLDVAIVTGTVSCQRDLEVLRH---ARNYSNYLIALGTCATHGS 89 Query: 135 Y---------------YHYSYSVVRGCD-----RIVPVDIYVPGCPPTAEALIYGILLLQ 174 Y + ++ D V VD +PGCP + +L L Sbjct: 90 VQGAVEGKLRDKLEKVYGTRANTMKALDPKPVVEYVAVDFALPGCPYDKMEIYQLLLDLA 149 Query: 175 KKIR 178 K + Sbjct: 150 KGVE 153 >gi|159905361|ref|YP_001549023.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanococcus maripaludis C6] gi|159886854|gb|ABX01791.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanococcus maripaludis C6] Length = 288 Score = 38.0 bits (87), Expect = 0.66, Method: Composition-based stats. Identities = 10/35 (28%), Positives = 16/35 (45%) Query: 141 SVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175 + V+ +V D +PGCPP I+ L + Sbjct: 131 TTVKPITEVVKADYVIPGCPPKPALTAGAIVALLE 165 >gi|150402894|ref|YP_001330188.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanococcus maripaludis C7] gi|150033924|gb|ABR66037.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanococcus maripaludis C7] Length = 288 Score = 38.0 bits (87), Expect = 0.69, Method: Composition-based stats. Identities = 10/35 (28%), Positives = 16/35 (45%) Query: 141 SVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175 + V+ +V D +PGCPP I+ L + Sbjct: 131 TTVKPITEVVKADYVIPGCPPKPALTAGAIVALLE 165 >gi|51246063|ref|YP_065947.1| hydrogenase, small chain [Desulfotalea psychrophila LSv54] gi|50877100|emb|CAG36940.1| probable hydrogenase, small chain [Desulfotalea psychrophila LSv54] Length = 207 Score = 38.0 bits (87), Expect = 0.70, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 48/120 (40%), Gaps = 34/120 (28%) Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY-------------- 135 P DV V G +++ A ++ + + ++++G CA G Sbjct: 79 PEGVDVTFVEGAVSSVDDVAKIQLIRR--RSKVLVALGDCAVTGNVPAMRNEFQVEDILN 136 Query: 136 --YHYSYSV---------------VRGCDRIVPVDIYVPGCPPTAEALIYGI-LLLQKKI 177 + + + V V VD+++PGCPP+++A+ + I LLQ +I Sbjct: 137 RAFIETAACQAQIPMDGVPQLNARVVPIHAHVAVDLFLPGCPPSSDAIFFLISELLQGRI 196 >gi|134046737|ref|YP_001098222.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Methanococcus maripaludis C5] gi|132664362|gb|ABO36008.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Methanococcus maripaludis C5] Length = 288 Score = 37.6 bits (86), Expect = 0.71, Method: Composition-based stats. Identities = 10/35 (28%), Positives = 16/35 (45%) Query: 141 SVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175 + V+ +V D +PGCPP I+ L + Sbjct: 131 TTVKPITEVVKADYVIPGCPPKPALTAGAIVALLE 165 >gi|212223683|ref|YP_002306919.1| cytosolic NiFe-hydrogenase, delta subunit [Thermococcus onnurineus NA1] gi|212008640|gb|ACJ16022.1| cytosolic NiFe-hydrogenase, delta subunit [Thermococcus onnurineus NA1] Length = 265 Score = 37.6 bits (86), Expect = 0.71, Method: Composition-based stats. Identities = 19/99 (19%), Positives = 39/99 (39%), Gaps = 25/99 (25%) Query: 94 DVMIVAGTL-TNKMASALRRVYDQMPEPRYVISMGSCANGGGY----------------Y 136 D+ + G++ T + ++++ + + V+++G+CA GG Y Sbjct: 54 DIAFIEGSVSTEEEVELVKKIRE---NAKIVVAVGACATQGGVQSWEKDKSLEELWKAVY 110 Query: 137 HYS-----YSVVRGCDRIVPVDIYVPGCPPTAEALIYGI 170 + + + VD + GCPP + IY I Sbjct: 111 GDGKVKFEPKMAEPLENYIKVDYRIYGCPPEKKDFIYAI 149 >gi|307153305|ref|YP_003888689.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Cyanothece sp. PCC 7822] gi|306983533|gb|ADN15414.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Cyanothece sp. PCC 7822] Length = 182 Score = 37.6 bits (86), Expect = 0.78, Method: Composition-based stats. Identities = 25/107 (23%), Positives = 34/107 (31%), Gaps = 37/107 (34%) Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANG-----------GG---Y 135 P DV +V G + L +Y + VIS G CA GG Sbjct: 49 PENVDVCLVEGAI--ANEDNLELIYQVRKNTKLVISFGDCAVTANVPAMRNMLKGGAEPV 106 Query: 136 YHYSY---------------------SVVRGCDRIVPVDIYVPGCPP 161 Y V ++PVD+++PGCPP Sbjct: 107 LKRGYLELADDTRQLPDEPGIVPELLDKVTPVHEVIPVDLFMPGCPP 153 >gi|284990228|ref|YP_003408782.1| hypothetical protein Gobs_1697 [Geodermatophilus obscurus DSM 43160] gi|284063473|gb|ADB74411.1| hypothetical protein Gobs_1697 [Geodermatophilus obscurus DSM 43160] Length = 586 Score = 37.6 bits (86), Expect = 0.80, Method: Composition-based stats. Identities = 19/52 (36%), Positives = 34/52 (65%) Query: 79 LERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCA 130 L+R G+ ++P ++D+++V GT +A A+ V+ Q+PEPR+ +GS A Sbjct: 36 LDRRGWGHASAPAETDLLLVLGTPGEDLARAIDVVWSQVPEPRHRSGVGSGA 87 >gi|77993215|dbj|BAE46795.1| bidirectional hydrogenase Y subunit [Nostoc sp. PCC 7422] Length = 181 Score = 37.6 bits (86), Expect = 0.80, Method: Composition-based stats. Identities = 12/19 (63%), Positives = 14/19 (73%) Query: 143 VRGCDRIVPVDIYVPGCPP 161 V +VPVDIY+PGCPP Sbjct: 134 VIPVHTVVPVDIYLPGCPP 152 >gi|254425734|ref|ZP_05039451.1| NADH ubiquinone oxidoreductase, 20 Kd subunit superfamily [Synechococcus sp. PCC 7335] gi|196188157|gb|EDX83122.1| NADH ubiquinone oxidoreductase, 20 Kd subunit superfamily [Synechococcus sp. PCC 7335] Length = 191 Score = 37.6 bits (86), Expect = 0.84, Method: Composition-based stats. Identities = 13/24 (54%), Positives = 17/24 (70%) Query: 143 VRGCDRIVPVDIYVPGCPPTAEAL 166 V ++VPVD Y+PGCPP AE + Sbjct: 144 VLPVHQVVPVDCYLPGCPPDAERI 167 >gi|41018393|sp|Q00409|VHUG_METVO RecName: Full=F420-non-reducing hydrogenase vhu subunit G gi|1747407|emb|CAA43509.1| methylviologen-reducing hydrogenase subunit [Methanococcus voltae PS] Length = 287 Score = 37.6 bits (86), Expect = 0.89, Method: Composition-based stats. Identities = 12/35 (34%), Positives = 17/35 (48%) Query: 141 SVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175 + V IV V+ +PGCPP E I+ L + Sbjct: 132 NSVMPVPSIVDVEYVIPGCPPRPEINAGAIVALLE 166 >gi|194334727|ref|YP_002016587.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Prosthecochloris aestuarii DSM 271] gi|194312545|gb|ACF46940.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Prosthecochloris aestuarii DSM 271] Length = 254 Score = 37.2 bits (85), Expect = 0.93, Method: Composition-based stats. Identities = 23/92 (25%), Positives = 40/92 (43%), Gaps = 21/92 (22%) Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGG----------------YYH 137 D+ +V G+++ ++R+ + + +I+ GSCA GG Y Sbjct: 59 DIALVEGSISR--EDEVQRLKAIRNQAKVLIAYGSCACFGGINSLKNSFTTEQCVRDVYG 116 Query: 138 YSYS---VVRGCDRIVPVDIYVPGCPPTAEAL 166 S+ VR +V VD +PGCP + E + Sbjct: 117 DSHVDTLPVRRISDVVNVDFSIPGCPVSKEEV 148 >gi|225848576|ref|YP_002728739.1| quinone-reactive Ni/Fe-hydrogenase small chain (membrane-bound hydrogenase small subunit) (hydrogen:quinoneoxidoreductase) [Sulfurihydrogenibium azorense Az-Fu1] gi|225643249|gb|ACN98299.1| quinone-reactive Ni/Fe-hydrogenase small chain (Membrane-bound hydrogenase small subunit) (Hydrogen:quinoneoxidoreductase) [Sulfurihydrogenibium azorense Az-Fu1] Length = 416 Score = 37.2 bits (85), Expect = 0.94, Method: Composition-based stats. Identities = 24/92 (26%), Positives = 41/92 (44%), Gaps = 16/92 (17%) Query: 95 VMIVAGTLTNKMASAL----------RRVYDQMPEPRYVISMGSCANGGGY---YHYSYS 141 ++ V G++ KM A +RV + + VI++G+CA+ GG Y Sbjct: 166 LLFVEGSIPVKMEYAFTTGRHPETGVQRVRRLAKDAKAVIAVGACASFGGVPAAYPNPTG 225 Query: 142 VVRGCDRI--VPVDIYVPGCPPTAEALIYGIL 171 V D + VPV + +P CP ++ I+ Sbjct: 226 AVGVMDVVSGVPV-VNIPACPANPVNIVGVIM 256 >gi|221209786|ref|ZP_03582767.1| conserved hypothetical protein [Burkholderia multivorans CGD1] gi|221170474|gb|EEE02940.1| conserved hypothetical protein [Burkholderia multivorans CGD1] Length = 413 Score = 37.2 bits (85), Expect = 1.00, Method: Composition-based stats. Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 3/56 (5%) Query: 66 AVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPR 121 ++ P +DL R GF+ + R SD+ G +T +M AL Y+Q +PR Sbjct: 91 DLDQSVIGNPAHDLLRLGFSVATAARSSDL---PGIITWRMIEALIAGYEQAFDPR 143 >gi|206890611|ref|YP_002249643.1| F420-non-reducing hydrogenase vhu subunit G [Thermodesulfovibrio yellowstonii DSM 11347] gi|206742549|gb|ACI21606.1| F420-non-reducing hydrogenase vhu subunit G [Thermodesulfovibrio yellowstonii DSM 11347] Length = 248 Score = 37.2 bits (85), Expect = 1.00, Method: Composition-based stats. Identities = 24/104 (23%), Positives = 47/104 (45%), Gaps = 28/104 (26%) Query: 94 DVMIVAGTLTNKMA-SALRRVYDQMPEPRYVISMGSCANGGGY----------------Y 136 DV + G++T++ A ++++ + + ++++GSCA GG Y Sbjct: 53 DVAFIEGSITDEHAVERVKKIRE---RSKILVALGSCATIGGVNGMKNSFPLEEVGKYVY 109 Query: 137 HYSYSV-----VRGCDRIVPVDIYVPGCPP-TAE--ALIYGILL 172 SY + ++VPVD ++ GCP E +++ IL Sbjct: 110 GESYKFFPTLQTKAVHQVVPVDYFINGCPIYQPEFISVLKCILQ 153 >gi|282899672|ref|ZP_06307636.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Cylindrospermopsis raciborskii CS-505] gi|281195551|gb|EFA70484.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Cylindrospermopsis raciborskii CS-505] Length = 163 Score = 37.2 bits (85), Expect = 1.0, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 44/120 (36%), Gaps = 36/120 (30%) Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH------------ 137 P DV++V G + L ++ + +IS G CA G Sbjct: 31 PEGVDVVLVEGAI--ANEEHLEIIHKIRQRTKTIISFGDCAVTGNVTAMRNLTGTANVSL 88 Query: 138 ---------------YSYSVVRGC-DRIVPV------DIYVPGCPPTAEALIYGILLLQK 175 +S +V DR+VPV DIY+PGCPP+A + + L + Sbjct: 89 QLAYIEGADVNQKIPHSPGIVPPLIDRVVPVHNIVDVDIYLPGCPPSATRIKAALEPLLR 148 >gi|121533907|ref|ZP_01665733.1| hydrogenase (NiFe) small subunit HydA [Thermosinus carboxydivorans Nor1] gi|121307418|gb|EAX48334.1| hydrogenase (NiFe) small subunit HydA [Thermosinus carboxydivorans Nor1] Length = 413 Score = 37.2 bits (85), Expect = 1.0, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 13/68 (19%) Query: 118 PEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD----IYVPGCPPTAE--------A 165 P+ +Y+I++G CA GG +Y G + V I +PGCP + Sbjct: 143 PKAKYIIAVGDCACYGGP-SAAYPNPGGAKGVGKVVSQTVINIPGCPAHPDWITGTLTHL 201 Query: 166 LIYGILLL 173 L+YG+ L Sbjct: 202 LLYGMPQL 209 >gi|14717801|gb|AAB02350.2| mvhG [Methanothermobacter thermautotrophicus] Length = 308 Score = 37.2 bits (85), Expect = 1.0, Method: Composition-based stats. Identities = 10/31 (32%), Positives = 17/31 (54%) Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLL 173 V+ ++ VD VPGCPP ++ ++ L Sbjct: 137 VKPLGEVIDVDFEVPGCPPRSDVAAEAVMAL 167 >gi|242398275|ref|YP_002993699.1| NiFe hydrogenase I, subunit delta [Thermococcus sibiricus MM 739] gi|242264668|gb|ACS89350.1| NiFe hydrogenase I, subunit delta [Thermococcus sibiricus MM 739] Length = 267 Score = 37.2 bits (85), Expect = 1.0, Method: Composition-based stats. Identities = 21/101 (20%), Positives = 43/101 (42%), Gaps = 23/101 (22%) Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY--------YH------YS 139 D+ + G+++ + + V + + VI++GSCA GG ++ Y Sbjct: 60 DIAFIEGSVSTQ--EEVELVKKIREKAKIVIAVGSCAVHGGVQSWDKDKEFNELWKTVYG 117 Query: 140 YSVVR-------GCDRIVPVDIYVPGCPPTAEALIYGILLL 173 + V+ ++ + VD + GCPP + +Y + L Sbjct: 118 DAHVKFEPKMAEPVEKYIKVDYKLYGCPPEKKDFLYALGTL 158 >gi|161520546|ref|YP_001583973.1| hypothetical protein Bmul_3998 [Burkholderia multivorans ATCC 17616] gi|189353265|ref|YP_001948892.1| hypothetical protein BMULJ_04505 [Burkholderia multivorans ATCC 17616] gi|160344596|gb|ABX17681.1| conserved hypothetical protein [Burkholderia multivorans ATCC 17616] gi|189337287|dbj|BAG46356.1| conserved hypothetical protein [Burkholderia multivorans ATCC 17616] Length = 413 Score = 37.2 bits (85), Expect = 1.0, Method: Composition-based stats. Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 3/56 (5%) Query: 66 AVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPR 121 ++ P +DL R GF+ + R SD+ G +T +M AL Y+Q +PR Sbjct: 91 DLDQSVIGNPAHDLLRLGFSVATAARSSDL---PGIITWRMIEALIAGYEQAFDPR 143 >gi|221196092|ref|ZP_03569139.1| conserved hypothetical protein [Burkholderia multivorans CGD2M] gi|221202765|ref|ZP_03575784.1| conserved hypothetical protein [Burkholderia multivorans CGD2] gi|221176699|gb|EEE09127.1| conserved hypothetical protein [Burkholderia multivorans CGD2] gi|221182646|gb|EEE15046.1| conserved hypothetical protein [Burkholderia multivorans CGD2M] Length = 413 Score = 37.2 bits (85), Expect = 1.1, Method: Composition-based stats. Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 3/56 (5%) Query: 66 AVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPR 121 ++ P +DL R GF+ + R SD+ G +T +M AL Y+Q +PR Sbjct: 91 DLDQSVIGNPAHDLLRLGFSVATAARSSDL---PGIITWRMIEALIAGYEQAFDPR 143 >gi|15679146|ref|NP_276263.1| methyl viologen-reducing hydrogenase, gamma subunit [Methanothermobacter thermautotrophicus str. Delta H] gi|41017479|sp|Q50782|MVHG_METTH RecName: Full=F420-non-reducing hydrogenase subunit G; AltName: Full=Methyl viologen-reducing hydrogenase subunit gamma; Short=MVH subunit G gi|2622239|gb|AAB85624.1| methyl viologen-reducing hydrogenase, gamma subunit [Methanothermobacter thermautotrophicus str. Delta H] Length = 308 Score = 37.2 bits (85), Expect = 1.1, Method: Composition-based stats. Identities = 10/31 (32%), Positives = 17/31 (54%) Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLL 173 V+ ++ VD VPGCPP ++ ++ L Sbjct: 137 VKPLGEVIDVDFEVPGCPPRSDVAAEAVMAL 167 >gi|45359258|ref|NP_988815.1| F420-non-reducing hydrogenase subunit [Methanococcus maripaludis S2] gi|45048133|emb|CAF31251.1| F420-non-reducing hydrogenase subunit [Methanococcus maripaludis S2] Length = 288 Score = 37.2 bits (85), Expect = 1.1, Method: Composition-based stats. Identities = 11/33 (33%), Positives = 15/33 (45%) Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175 VR +V D +PGCPP I+ L + Sbjct: 133 VRAISDVVKADYVIPGCPPKPALTAGAIVALLE 165 >gi|224369333|ref|YP_002603497.1| HynB [Desulfobacterium autotrophicum HRM2] gi|223692050|gb|ACN15333.1| HynB [Desulfobacterium autotrophicum HRM2] Length = 330 Score = 37.2 bits (85), Expect = 1.2, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 7/67 (10%) Query: 115 DQMPEPRYVISMGSCANGGG-----YYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYG 169 D +P+ I++G+CA GG Y V+ + I + GCPP L+ Sbjct: 165 DVIPKAAVTIALGTCAAYGGIPSAAPNPGGYKGVKDAIGV--ATINISGCPPNPLNLLST 222 Query: 170 ILLLQKK 176 I+ K Sbjct: 223 IVKYLNK 229 >gi|85857970|ref|YP_460172.1| nickel-dependent hydrogenase, small chain [Syntrophus aciditrophicus SB] gi|85721061|gb|ABC76004.1| nickel-dependent hydrogenase, small chain [Syntrophus aciditrophicus SB] Length = 253 Score = 37.2 bits (85), Expect = 1.2, Method: Composition-based stats. Identities = 26/96 (27%), Positives = 41/96 (42%), Gaps = 26/96 (27%) Query: 94 DVMIVAGTLTNKMAS-ALRRVYDQMPEPRYVISMGSCANGGGY----------------Y 136 DV IV G++T++ A +R++ D +I+ GSCA GG Y Sbjct: 57 DVAIVEGSITDEHAEQRIRKIRD---RSAVLIAYGSCATIGGVNGMKNSFVLDEIRQSVY 113 Query: 137 HYSYSV-----VRGCDRIVPVDIYVPGCPP-TAEAL 166 Y + R ++V VD ++ GCP E + Sbjct: 114 GKDYQLFDSKKTRPIHQVVKVDYFINGCPVYHPEVI 149 >gi|171058144|ref|YP_001790493.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Leptothrix cholodnii SP-6] gi|170775589|gb|ACB33728.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Leptothrix cholodnii SP-6] Length = 191 Score = 36.8 bits (84), Expect = 1.3, Method: Composition-based stats. Identities = 32/155 (20%), Positives = 51/155 (32%), Gaps = 53/155 (34%) Query: 59 TFGLACCAVEMMQASMPRYDL-ERF-----GFAPRASP-------RQSDVMIVAGTLTNK 105 T LA C M D+ ER SP D+ ++ G L N Sbjct: 20 TVSLAGC----FGCHMSFLDIDERLLELIEHIEFDRSPLTDIKQIGHCDLGLIEGGLCNS 75 Query: 106 MASALRRVYDQMPEPRYVISMGSCANGGG------------YYHYSY------------- 140 + + + + ++++G+CA GG H Y Sbjct: 76 ENVVVLKEFRAHCKT--LVAVGACAINGGLPAQRNHLDLAQMLHDVYQSRPGMTVGSVIP 133 Query: 141 ---------SVVRGCDRIVPVDIYVPGCPPTAEAL 166 + V +V VD ++PGCPP+A+A Sbjct: 134 NDPELPLPLNKVHPIHEVVHVDYFLPGCPPSADAF 168 >gi|257791028|ref|YP_003181634.1| hydrogenase (NiFe) small subunit HydA [Eggerthella lenta DSM 2243] gi|317488257|ref|ZP_07946824.1| hydrogenase small subunit [Eggerthella sp. 1_3_56FAA] gi|325830791|ref|ZP_08164175.1| putative hydrogenase-2 small chain [Eggerthella sp. HGA1] gi|257474925|gb|ACV55245.1| hydrogenase (NiFe) small subunit HydA [Eggerthella lenta DSM 2243] gi|316912639|gb|EFV34181.1| hydrogenase small subunit [Eggerthella sp. 1_3_56FAA] gi|325487198|gb|EGC89641.1| putative hydrogenase-2 small chain [Eggerthella sp. HGA1] Length = 410 Score = 36.8 bits (84), Expect = 1.3, Method: Composition-based stats. Identities = 18/81 (22%), Positives = 32/81 (39%), Gaps = 13/81 (16%) Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI---------VPVDIYVP 157 + + + V+++GSCA GG+ + PV + VP Sbjct: 146 KPGTEHLIEAAEKANAVVALGSCAVNGGWMGAHPNQAGALGVQAFLKKAGINTPV-VNVP 204 Query: 158 GCPPTAE---ALIYGILLLQK 175 GCP E A++ ++ L+K Sbjct: 205 GCPANPEWLVAVLADVIFLEK 225 >gi|332296153|ref|YP_004438076.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Thermodesulfobium narugense DSM 14796] gi|332179256|gb|AEE14945.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Thermodesulfobium narugense DSM 14796] Length = 322 Score = 36.8 bits (84), Expect = 1.3, Method: Composition-based stats. Identities = 10/36 (27%), Positives = 19/36 (52%) Query: 140 YSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175 Y VR ++ VD ++ GCPP ++ ++ + K Sbjct: 151 YPYVRPIQSVIDVDYFIGGCPPHHSVVLNALVAILK 186 >gi|320352158|ref|YP_004193497.1| F420-non-reducing hydrogenase subunit G [Desulfobulbus propionicus DSM 2032] gi|320120660|gb|ADW16206.1| F420-non-reducing hydrogenase subunit G [Desulfobulbus propionicus DSM 2032] Length = 330 Score = 36.8 bits (84), Expect = 1.3, Method: Composition-based stats. Identities = 10/22 (45%), Positives = 12/22 (54%) Query: 142 VVRGCDRIVPVDIYVPGCPPTA 163 D++V VD YV GCPP Sbjct: 152 TCSTIDQVVAVDYYVGGCPPHP 173 >gi|116749652|ref|YP_846339.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Syntrophobacter fumaroxidans MPOB] gi|116698716|gb|ABK17904.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Syntrophobacter fumaroxidans MPOB] Length = 300 Score = 36.8 bits (84), Expect = 1.4, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 44/115 (38%), Gaps = 32/115 (27%) Query: 87 RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY----------- 135 S ++DV IV+G + + A+ + + + +I+ GSCA GG Sbjct: 57 VVSIPRADVGIVSGGIRTEHGLAVAKAVRESCD--ILIANGSCACMGGIPSLANLVPPDV 114 Query: 136 ----------------YHYSY--SVVRGCDRIVPVDIYVPGCPPTAEALIYGILL 172 + + V + +VPVDI++PGCPP L L Sbjct: 115 LKQGVPNLEHGVEDGDFELPPLTARVAAINEVVPVDIFLPGCPP-PTHLFAAALQ 168 >gi|312113759|ref|YP_004011355.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Rhodomicrobium vannielii ATCC 17100] gi|311218888|gb|ADP70256.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Rhodomicrobium vannielii ATCC 17100] Length = 358 Score = 36.8 bits (84), Expect = 1.4, Method: Composition-based stats. Identities = 32/181 (17%), Positives = 55/181 (30%), Gaps = 60/181 (33%) Query: 50 ARTGSLMWMTFGLACCAVEMMQASMP----RYDLERFGFAPRASPRQS------------ 93 AR L + G C++ ++ A P DL R S ++ Sbjct: 22 ARLSLLWLQSGGCGGCSMSLLNADSPDLFAALDLGRIDVLAHPSLSEASGEDYHALIARI 81 Query: 94 -------DVMIVAGTL---------------TNKMASALRRVYDQMPEPRYVISMGSCAN 131 D++ V G + T K ++ V + +VI++GSC Sbjct: 82 LSGQQPLDILCVEGAILRGPNGTGRFHLQPGTGK--PVMQLVAELAACAGHVIAIGSCTA 139 Query: 132 GGGYYHYSYSVVRGC-------------------DRIVPVDIYVPGCPPTAEALIYGILL 172 GG +V C +P I + GCP ++ ++ Sbjct: 140 YGGVSAAGDNVTEACGLAFEGAEPGGLLGPGFRSHSGLPA-INIAGCPTHPGWIVETLVQ 198 Query: 173 L 173 L Sbjct: 199 L 199 >gi|239627428|ref|ZP_04670459.1| 3-oxoacyl-[acyl-carrier-protein] reductase [Clostridiales bacterium 1_7_47_FAA] gi|239517574|gb|EEQ57440.1| 3-oxoacyl-[acyl-carrier-protein] reductase [Clostridiales bacterium 1_7_47FAA] Length = 252 Score = 36.8 bits (84), Expect = 1.4, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 21/52 (40%) Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151 +T+ MA A R + + P I++ + G Y Y D I+P Sbjct: 39 VMVTHNMADAGRLIAEVEDNPGTCIALSNEDGDGAVYGEVYRRFGSVDVIIP 90 >gi|318041121|ref|ZP_07973077.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Synechococcus sp. CB0101] Length = 190 Score = 36.8 bits (84), Expect = 1.4, Method: Composition-based stats. Identities = 12/33 (36%), Positives = 20/33 (60%) Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175 V +VPV++Y+PGCPP A+ + + L + Sbjct: 143 VLPVHELVPVEVYLPGCPPPADRIRAALEPLLR 175 >gi|320160664|ref|YP_004173888.1| bidirectional hydrogenase Y subunit [Anaerolinea thermophila UNI-1] gi|319994517|dbj|BAJ63288.1| bidirectional hydrogenase Y subunit [Anaerolinea thermophila UNI-1] Length = 177 Score = 36.8 bits (84), Expect = 1.5, Method: Composition-based stats. Identities = 10/31 (32%), Positives = 17/31 (54%) Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175 V VD+++PGCPP A+ + + L + Sbjct: 133 PLHHYVHVDVFLPGCPPAADTIYQVLSELIE 163 >gi|253699753|ref|YP_003020942.1| hydrogenase (NiFe) small subunit HydA [Geobacter sp. M21] gi|251774603|gb|ACT17184.1| hydrogenase (NiFe) small subunit HydA [Geobacter sp. M21] Length = 368 Score = 36.8 bits (84), Expect = 1.5, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 39/91 (42%), Gaps = 15/91 (16%) Query: 95 VMIVAGTL-TNKMASALR--------RVYDQMPEPRYVISMGSCANGGGYYHYSYSV--- 142 +++V G + T + + + + +IS+G+CA+ GG S + Sbjct: 111 ILVVEGAIPTKQNGIFCKVSGKTAMESLQEAAKGAAAIISIGTCASYGGIQSVSPNPTGA 170 Query: 143 --VRGCDRIVPVDIYVPGCPPTAEALIYGIL 171 VR + P+ I +PGCPP + +L Sbjct: 171 VGVRDIVKDKPI-INIPGCPPNPYNFLSTVL 200 >gi|2746739|gb|AAB94935.1| NiFe hydrogenase delta subunit [Thermococcus litoralis DSM 5473] Length = 263 Score = 36.4 bits (83), Expect = 1.6, Method: Composition-based stats. Identities = 16/98 (16%), Positives = 38/98 (38%), Gaps = 23/98 (23%) Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY------------------ 135 D+ + G+++ + + V + + V+++G+CA GG Sbjct: 55 DIAFIEGSVSTQ--EEVELVKKIREKAKIVVAVGACATQGGVQSWGKDKELSELWKTVYG 112 Query: 136 ---YHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGI 170 + + ++ + VD + GCPP + +Y + Sbjct: 113 DAHVKFEPKMAEPVEKYIKVDYKLYGCPPEKKDFLYAL 150 >gi|18977265|ref|NP_578622.1| sulfhydrogenase delta subunit [Pyrococcus furiosus DSM 3638] gi|562776|emb|CAA53036.1| hydrogenase (delta subunit) [Pyrococcus furiosus DSM 3638] gi|18892934|gb|AAL81017.1| sulfhydrogenase delta subunit [Pyrococcus furiosus DSM 3638] Length = 261 Score = 36.4 bits (83), Expect = 1.6, Method: Composition-based stats. Identities = 17/98 (17%), Positives = 40/98 (40%), Gaps = 24/98 (24%) Query: 94 DVMIVAGTL-TNKMASALRRVYDQMPEPRYVISMGSCANGGGY-----------YHYSYS 141 D+ + G++ T + ++++ + + V+++G+CA GG + Y Sbjct: 53 DIAFIEGSVSTEEEVELVKKIRE---NAKIVVAVGACAVQGGVQSWSEKPLEELWKKVYG 109 Query: 142 VVR---------GCDRIVPVDIYVPGCPPTAEALIYGI 170 + + + VD + GCPP + +Y + Sbjct: 110 DAKVKFQPKKAEPVSKYIKVDYNIYGCPPEKKDFLYAL 147 >gi|15606279|ref|NP_213658.1| hydrogenase small subunit [Aquifex aeolicus VF5] gi|2983467|gb|AAC07047.1| hydrogenase small subunit [Aquifex aeolicus VF5] Length = 349 Score = 36.4 bits (83), Expect = 1.6, Method: Composition-based stats. Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 6/48 (12%) Query: 119 EPRYVISMGSCANGGGYYHYSYSVVRGCDRIV-----PVDIYVPGCPP 161 +VI++GSCA+ GG S + PV + VPGCPP Sbjct: 147 HAAFVIAVGSCASWGGIPKASPNPTGAVPVYEIVKDKPV-VNVPGCPP 193 >gi|78044264|ref|YP_360378.1| [Ni/Fe] hydrogenase small subunit [Carboxydothermus hydrogenoformans Z-2901] gi|77996379|gb|ABB15278.1| [Ni/Fe] hydrogenase, small subunit [Carboxydothermus hydrogenoformans Z-2901] Length = 354 Score = 36.4 bits (83), Expect = 1.7, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 4/46 (8%) Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVD----IYVPGCPPTAE 164 VI++G+CA GG + +D + +PGCPP + Sbjct: 148 VIAIGTCAAFGGIPAADPNPTGCVPVTEVIDPKKVLNIPGCPPHPD 193 >gi|332159306|ref|YP_004424585.1| cytochrome-c3 hydrogenase delta chain [Pyrococcus sp. NA2] gi|331034769|gb|AEC52581.1| cytochrome-c3 hydrogenase delta chain [Pyrococcus sp. NA2] Length = 263 Score = 36.4 bits (83), Expect = 1.7, Method: Composition-based stats. Identities = 18/98 (18%), Positives = 39/98 (39%), Gaps = 24/98 (24%) Query: 94 DVMIVAGTL-TNKMASALRRVYDQMPEPRYVISMGSCANGGGY-----------YHYSYS 141 D+ + G++ T + ++R+ + + V+++G+CA GG + Y Sbjct: 55 DIAFIEGSVSTEEEVELVKRIRE---NAKIVVAVGACAVQGGVQSWSDRSLEELWKKVYG 111 Query: 142 VVR---------GCDRIVPVDIYVPGCPPTAEALIYGI 170 + + + VD + GCPP +Y + Sbjct: 112 DAKVKFQPKKAEPVSKYIKVDYNIYGCPPEKRDFLYAL 149 >gi|119944967|ref|YP_942647.1| hydrogen dehydrogenase [Psychromonas ingrahamii 37] gi|119863571|gb|ABM03048.1| Hydrogen dehydrogenase [Psychromonas ingrahamii 37] Length = 433 Score = 36.4 bits (83), Expect = 1.7, Method: Composition-based stats. Identities = 23/108 (21%), Positives = 40/108 (37%), Gaps = 37/108 (34%) Query: 93 SDVMIVAGTLTN-KMASALRRVYDQMPEPRYVISMGSCANGGGY---------------- 135 D+ ++ G + N + + LR + + +I++GSCA GG Sbjct: 306 CDLGLIEGAVCNTENIAVLRHFRESC---KIIIAVGSCAINGGVPSLRNNIDVKDCLDEA 362 Query: 136 YHYSYSVVRG-----------------CDRIVPVDIYVPGCPPTAEAL 166 Y +V ++ VD ++PGCPP A+A Sbjct: 363 YLNGIGLVNPKVPIDKELPYLLEKVYPIHEVIKVDYFLPGCPPPADAF 410 >gi|119489271|ref|ZP_01622078.1| hydrogenase small subunit [Lyngbya sp. PCC 8106] gi|119454745|gb|EAW35890.1| hydrogenase small subunit [Lyngbya sp. PCC 8106] Length = 182 Score = 36.4 bits (83), Expect = 1.7, Method: Composition-based stats. Identities = 12/31 (38%), Positives = 19/31 (61%) Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLL 173 V +V VD+++PGCPP+A+ + I L Sbjct: 135 VCPIHEVVDVDLFLPGCPPSADRIKAAIAPL 165 >gi|298241647|ref|ZP_06965454.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Ktedonobacter racemifer DSM 44963] gi|297554701|gb|EFH88565.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Ktedonobacter racemifer DSM 44963] Length = 342 Score = 36.4 bits (83), Expect = 1.8, Method: Composition-based stats. Identities = 17/86 (19%), Positives = 32/86 (37%), Gaps = 13/86 (15%) Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCD------------ 147 +TN+ + P+ V++ G+CA GG + + Sbjct: 105 DPVTNQPIPTATWIDRLAPKAWAVVAAGTCATYGGIHAMQGNPTGAMGLADYLGKNWRSW 164 Query: 148 RIVPVDIYVPGCPPTAEALIYGILLL 173 +P+ + VPGCP + + +L L Sbjct: 165 AGIPI-VNVPGCPVQPDNFMETLLYL 189 >gi|218441072|ref|YP_002379401.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Cyanothece sp. PCC 7424] gi|218173800|gb|ACK72533.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Cyanothece sp. PCC 7424] Length = 182 Score = 36.4 bits (83), Expect = 1.9, Method: Composition-based stats. Identities = 9/19 (47%), Positives = 14/19 (73%) Query: 143 VRGCDRIVPVDIYVPGCPP 161 V ++PVD+++PGCPP Sbjct: 135 VSPVHEVIPVDLFMPGCPP 153 >gi|298492583|ref|YP_003722760.1| NADH ubiquinone oxidoreductase 20 kDa subunit ['Nostoc azollae' 0708] gi|298234501|gb|ADI65637.1| NADH ubiquinone oxidoreductase 20 kDa subunit ['Nostoc azollae' 0708] Length = 167 Score = 36.4 bits (83), Expect = 1.9, Method: Composition-based stats. Identities = 33/157 (21%), Positives = 51/157 (32%), Gaps = 43/157 (27%) Query: 60 FGLACCAVEMMQASMPRYDLE-RFGFAPRAS------PRQSDVMIVAGTLTNKMASALRR 112 G + C + + DL +F P D+++V G N+ L Sbjct: 12 GGCSGCHMSFLDLDKCLIDLAAKFDLVYSPISDIKAYPEGVDIVLVEGASANEEHLELIH 71 Query: 113 VYDQMPEPRYVISMGSCANGG----------------------------------GYYHY 138 + Q + +I+ G CA G G + Sbjct: 72 IIRQGTKT--IIAFGDCAVTGNVTAIRNPFFSANISLRLAYIEGADVNQQIPHAPGIFPP 129 Query: 139 SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175 V IVPVDI +PGCPP+A ++ + L K Sbjct: 130 LLDKVVPVHYIVPVDICLPGCPPSALSICAALEPLIK 166 >gi|78777635|ref|YP_393950.1| Ni-Fe hydrogenase, small subunit [Sulfurimonas denitrificans DSM 1251] gi|78498175|gb|ABB44715.1| Ni-Fe hydrogenase, small subunit [Sulfurimonas denitrificans DSM 1251] Length = 293 Score = 36.4 bits (83), Expect = 1.9, Method: Composition-based stats. Identities = 16/103 (15%), Positives = 40/103 (38%), Gaps = 16/103 (15%) Query: 91 RQSDVMIVAGTLTNKM----ASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYS----- 141 + +V+I+ G ++ + + + + ++++G+CA GG + S Sbjct: 57 IECEVLIIEGAISEEFQRGGVPIFEIIKNYSKRVQKILTVGTCATFGGIFRESDYKDTAG 116 Query: 142 -------VVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177 + + I + GCP E L+ + ++K + Sbjct: 117 MHFDQDRALHNFSDFLDKTISISGCPIHPEVLVNTLYAIKKSV 159 >gi|332704235|ref|ZP_08424323.1| hydrogenase (NiFe) small subunit HydA [Desulfovibrio africanus str. Walvis Bay] gi|332554384|gb|EGJ51428.1| hydrogenase (NiFe) small subunit HydA [Desulfovibrio africanus str. Walvis Bay] Length = 307 Score = 36.4 bits (83), Expect = 1.9, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 31/78 (39%), Gaps = 8/78 (10%) Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCD--------RI 149 + G + +K S + + + + I++GSC GG ++ I Sbjct: 122 IIGDVHHKEISINQAMLELGKDAAACIALGSCGAYGGIPAAKGNLTGCVGLRDFYQSKNI 181 Query: 150 VPVDIYVPGCPPTAEALI 167 + +PGCPP + +I Sbjct: 182 STPVVNIPGCPPHPDWII 199 >gi|193214064|ref|YP_001995263.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Chloroherpeton thalassium ATCC 35110] gi|193087541|gb|ACF12816.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Chloroherpeton thalassium ATCC 35110] Length = 254 Score = 36.4 bits (83), Expect = 1.9, Method: Composition-based stats. Identities = 21/86 (24%), Positives = 36/86 (41%), Gaps = 21/86 (24%) Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY----------------YH 137 DV ++ G+++ A + R+ + ++++GSCA GG Y Sbjct: 59 DVALIEGSISR--ADEVERLKKIRENAKILVALGSCACFGGVNSLKNRFPIEEVVTEVYG 116 Query: 138 YSY---SVVRGCDRIVPVDIYVPGCP 160 VR +V VD+ +PGCP Sbjct: 117 DMPKETEPVRRVSDVVKVDLCIPGCP 142 >gi|256828574|ref|YP_003157302.1| hydrogenase (NiFe) small subunit HydA [Desulfomicrobium baculatum DSM 4028] gi|256577750|gb|ACU88886.1| hydrogenase (NiFe) small subunit HydA [Desulfomicrobium baculatum DSM 4028] Length = 319 Score = 36.4 bits (83), Expect = 2.0, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 6/62 (9%) Query: 118 PEPRYVISMGSCANGGGYYHYSYSV-----VRGCDRIVPVD-IYVPGCPPTAEALIYGIL 171 P+ I+ G+CA GG S + V + + V+ + VPGCPP L+ I+ Sbjct: 153 PKALATIAYGTCATYGGVQAASPNPTEAKGVNDALKHLGVNAVNVPGCPPNPYNLVGTIV 212 Query: 172 LL 173 L Sbjct: 213 HL 214 >gi|220909410|ref|YP_002484721.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Cyanothece sp. PCC 7425] gi|219866021|gb|ACL46360.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Cyanothece sp. PCC 7425] Length = 182 Score = 36.4 bits (83), Expect = 2.0, Method: Composition-based stats. Identities = 15/33 (45%), Positives = 20/33 (60%) Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175 V +VPVDI++PGCPP A+ + I L K Sbjct: 135 VLPIHEVVPVDIFMPGCPPPADRIKATIAPLLK 167 >gi|14521074|ref|NP_126549.1| cytochrome-c3 hydrogenase delta chain [Pyrococcus abyssi GE5] gi|5458291|emb|CAB49780.1| hydD-1 cytochrome-c3 hydrogenase delta chain [Pyrococcus abyssi GE5] Length = 261 Score = 36.4 bits (83), Expect = 2.0, Method: Composition-based stats. Identities = 17/98 (17%), Positives = 39/98 (39%), Gaps = 24/98 (24%) Query: 94 DVMIVAGTL-TNKMASALRRVYDQMPEPRYVISMGSCANGGGY-----------YHYSYS 141 D+ + G++ T + ++++ + + V+++G+CA GG + Y Sbjct: 53 DIAFIEGSVSTEEEVELVKKIRE---NAKIVVAVGACAVQGGVQSWTDKSLEELWKTVYG 109 Query: 142 VVR---------GCDRIVPVDIYVPGCPPTAEALIYGI 170 + + + VD + GCPP +Y + Sbjct: 110 DAKVKFQPKKAEPVSKYIKVDYNIYGCPPEKRDFLYAL 147 >gi|171317578|ref|ZP_02906766.1| conserved hypothetical protein [Burkholderia ambifaria MEX-5] gi|171097272|gb|EDT42119.1| conserved hypothetical protein [Burkholderia ambifaria MEX-5] Length = 411 Score = 36.1 bits (82), Expect = 2.1, Method: Composition-based stats. Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 16/74 (21%) Query: 66 AVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQ--------- 116 ++ P +D+ R GF+ + R SD+ G +T +M AL Y+Q Sbjct: 89 DLDQSVIGNPVHDVLRLGFSLATAARSSDL---PGIITWRMIEALVDGYEQAFDSRRRDE 145 Query: 117 ---MPEPRYV-ISM 126 MP P V I+M Sbjct: 146 LSHMPRPTEVKIAM 159 >gi|302878801|ref|YP_003847365.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Gallionella capsiferriformans ES-2] gi|302581590|gb|ADL55601.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Gallionella capsiferriformans ES-2] Length = 182 Score = 36.1 bits (82), Expect = 2.2, Method: Composition-based stats. Identities = 9/26 (34%), Positives = 17/26 (65%) Query: 141 SVVRGCDRIVPVDIYVPGCPPTAEAL 166 + V +V +D ++PGCPP+ +A+ Sbjct: 134 NQVHPIHEVVKIDYFIPGCPPSGDAI 159 >gi|321453027|gb|EFX64308.1| hypothetical protein DAPPUDRAFT_66315 [Daphnia pulex] Length = 360 Score = 36.1 bits (82), Expect = 2.5, Method: Composition-based stats. Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 3/43 (6%) Query: 122 YVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164 +V + +GGG Y +V+ +PVDIY GC E Sbjct: 165 FVSKCHTTHSGGGSYRE--YLVQNLSSFIPVDIY-GGCATKPE 204 >gi|289549181|ref|YP_003474169.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Thermocrinis albus DSM 14484] gi|289182798|gb|ADC90042.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Thermocrinis albus DSM 14484] Length = 284 Score = 36.1 bits (82), Expect = 2.5, Method: Composition-based stats. Identities = 20/98 (20%), Positives = 40/98 (40%), Gaps = 21/98 (21%) Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY--------------YHYS 139 D++IV G + + R + + R+V+++G+CA G + Sbjct: 59 DLLIVEGAVMEED----RSLLELANRARWVMAVGNCAVYGNIPAINNSHVSGLSFRFTEK 114 Query: 140 YSVVRGCDRI--VPVDIYVPGCPPTAEALIYGILLLQK 175 ++ +PV I + GCP E + +L+L + Sbjct: 115 GGPLKDFVSKGGLPV-INISGCPAHPEWICGTMLMLAE 151 >gi|169831803|ref|YP_001717785.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Candidatus Desulforudis audaxviator MP104C] gi|169638647|gb|ACA60153.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Candidatus Desulforudis audaxviator MP104C] Length = 317 Score = 36.1 bits (82), Expect = 2.5, Method: Composition-based stats. Identities = 11/27 (40%), Positives = 17/27 (62%) Query: 140 YSVVRGCDRIVPVDIYVPGCPPTAEAL 166 Y V+ +V VD ++PGCPPT+ + Sbjct: 147 YKEVKSLSDVVDVDYFMPGCPPTSAQI 173 >gi|296134474|ref|YP_003641721.1| hydrogenase (NiFe) small subunit HydA [Thermincola sp. JR] gi|296033052|gb|ADG83820.1| hydrogenase (NiFe) small subunit HydA [Thermincola potens JR] Length = 352 Score = 36.1 bits (82), Expect = 2.5, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 12/63 (19%) Query: 123 VISMGSCANGGGYYHYSYSVVRG--CDRIVPVD--IYVPGCPPTAE--------ALIYGI 170 V+++GSCA GG + + D+I + I +PGCPP + ++YG+ Sbjct: 147 VVALGSCACYGGLLSVKPNPLDNTGLDKIFTQNKVINIPGCPPHPDWVVGTLAHLILYGM 206 Query: 171 LLL 173 L Sbjct: 207 PDL 209 >gi|14591103|ref|NP_143178.1| cytochrome-c3 hydrogenase delta chain [Pyrococcus horikoshii OT3] gi|3257712|dbj|BAA30395.1| 266aa long hypothetical cytochrome-c3 hydrogenase delta chain [Pyrococcus horikoshii OT3] Length = 266 Score = 36.1 bits (82), Expect = 2.6, Method: Composition-based stats. Identities = 17/98 (17%), Positives = 39/98 (39%), Gaps = 24/98 (24%) Query: 94 DVMIVAGTL-TNKMASALRRVYDQMPEPRYVISMGSCANGGGY-----------YHYSYS 141 D+ + G++ T + ++++ + + V+++G+CA GG + Y Sbjct: 58 DIAFIEGSVSTEEEVELVKKIRE---NSKIVVAVGACAVQGGVQSWTDKSLEELWRTVYG 114 Query: 142 VVR---------GCDRIVPVDIYVPGCPPTAEALIYGI 170 + + + VD + GCPP +Y + Sbjct: 115 DAKVKFKPKKAEPVSKYIKVDYNIYGCPPEKRDFLYAL 152 >gi|23015033|ref|ZP_00054823.1| COG1740: Ni,Fe-hydrogenase I small subunit [Magnetospirillum magnetotacticum MS-1] Length = 375 Score = 35.7 bits (81), Expect = 2.7, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 39/90 (43%), Gaps = 14/90 (15%) Query: 95 VMIVAGTLTNKM---------ASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR- 144 V+++ G + K +A++ + VI++GSCA+ GG + Sbjct: 118 VLVIEGAIPVKDNGIYCKVGGKTAMQLTKECAEGAAAVIAIGSCASWGGMPSTPPNPTGA 177 Query: 145 -GCDRIV--PVDIYVPGCPPTAEALIYGIL 171 G I+ PV + +PGCPP + ++ Sbjct: 178 TGVAEILGKPV-VTIPGCPPNPYNFLSTVV 206 >gi|302549355|ref|ZP_07301697.1| NADH ubiquinone oxidoreductase [Streptomyces viridochromogenes DSM 40736] gi|302466973|gb|EFL30066.1| NADH ubiquinone oxidoreductase [Streptomyces viridochromogenes DSM 40736] Length = 363 Score = 35.7 bits (81), Expect = 2.7, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 43/119 (36%), Gaps = 21/119 (17%) Query: 73 SMPRYDLERF-----GFAPRASPRQSDVMIVA---GTLTNKMASALRRVYDQMPEPRYVI 124 + R DLE F G P + + D + T + + + P+ V+ Sbjct: 88 AAARGDLEPFILVIEGSIPNQNIIEGDGYWTSFGNDPETGEPQTLNWWIDQLAPKAWAVV 147 Query: 125 SMGSCANGGGYYHYSYSVVRGCD------------RIVPVDIYVPGCPPTAEALIYGIL 171 + G+CA GG + S + +PV + VPGCP E + ++ Sbjct: 148 AAGTCATFGGIHAMSGNPTGCMGLADYLGWDYTSQGGLPV-VNVPGCPIQPENFMETLV 205 >gi|297617287|ref|YP_003702446.1| hypothetical protein Slip_1104 [Syntrophothermus lipocalidus DSM 12680] gi|297145124|gb|ADI01881.1| protein of unknown function DUF362 [Syntrophothermus lipocalidus DSM 12680] Length = 585 Score = 35.7 bits (81), Expect = 2.8, Method: Composition-based stats. Identities = 10/30 (33%), Positives = 17/30 (56%) Query: 152 VDIYVPGCPPTAEALIYGILLLQKKIRRVG 181 V I++PGCPP E +I G+ + + + Sbjct: 533 VGIHLPGCPPHTEVIIDGVYRMFPDVEKAK 562 >gi|312136952|ref|YP_004004289.1| f420-non-reducing hydrogenase subunit g [Methanothermus fervidus DSM 2088] gi|311224671|gb|ADP77527.1| F420-non-reducing hydrogenase subunit G [Methanothermus fervidus DSM 2088] Length = 309 Score = 35.7 bits (81), Expect = 2.9, Method: Composition-based stats. Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 4/32 (12%) Query: 143 VRGCDRIVPVDIYVPGCPPT----AEALIYGI 170 V+ +V VD+ +PGCPP AE L+ + Sbjct: 138 VKPISEVVDVDLEIPGCPPKSDFAAEVLMKAL 169 >gi|309779567|ref|ZP_07674328.1| conserved hypothetical protein [Ralstonia sp. 5_7_47FAA] gi|308921808|gb|EFP67444.1| conserved hypothetical protein [Ralstonia sp. 5_7_47FAA] Length = 400 Score = 35.7 bits (81), Expect = 2.9, Method: Composition-based stats. Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 3/49 (6%) Query: 66 AVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVY 114 ++ P +DL R G + + R SD+ G +T +M AL Y Sbjct: 88 DLDQTVLGNPAHDLIRLGVSLATAARGSDL---PGIVTARMVEALMAGY 133 >gi|304315263|ref|YP_003850410.1| F420-non-reducing hydrogenase, subunit G [Methanothermobacter marburgensis str. Marburg] gi|313104137|sp|P60239|MVHG_METTM RecName: Full=F420-non-reducing hydrogenase subunit G; AltName: Full=Methyl viologen-reducing hydrogenase subunit gamma; Short=MVH subunit G gi|302588722|gb|ADL59097.1| F420-non-reducing hydrogenase, subunit G [Methanothermobacter marburgensis str. Marburg] Length = 308 Score = 35.7 bits (81), Expect = 2.9, Method: Composition-based stats. Identities = 11/33 (33%), Positives = 18/33 (54%) Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175 V+ ++ VD VPGCPP ++ ++ L K Sbjct: 137 VKPLGEVIDVDFEVPGCPPRSDVAAEVVMALLK 169 >gi|150399745|ref|YP_001323512.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanococcus vannielii SB] gi|150012448|gb|ABR54900.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanococcus vannielii SB] Length = 287 Score = 35.7 bits (81), Expect = 2.9, Method: Composition-based stats. Identities = 9/32 (28%), Positives = 14/32 (43%) Query: 142 VVRGCDRIVPVDIYVPGCPPTAEALIYGILLL 173 V+ ++ D +PGCPP I+ L Sbjct: 132 TVKPVTDVIKADYILPGCPPKPALNAAAIVAL 163 >gi|46310228|gb|AAS87375.1| NiFe-hydrogenase small subunit [Acaryochloris marina] Length = 133 Score = 35.7 bits (81), Expect = 2.9, Method: Composition-based stats. Identities = 24/105 (22%), Positives = 37/105 (35%), Gaps = 36/105 (34%) Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGG-------------GYY 136 P++ DV +V G + ++ +Y+I+ G CA G G Sbjct: 31 PQEVDVALVEGAI--ANTDHWEMIHQVRDCTQYLIAFGDCAVTGNVTALRNLLGTAEGVL 88 Query: 137 HYSYSV---------------------VRGCDRIVPVDIYVPGCP 160 SY V+ +VPVD+Y+PGCP Sbjct: 89 ERSYINLADLVPQIPAEEAIVPPLLDWVKPVHTVVPVDLYLPGCP 133 >gi|189347574|ref|YP_001944103.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Chlorobium limicola DSM 245] gi|189341721|gb|ACD91124.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Chlorobium limicola DSM 245] Length = 252 Score = 35.7 bits (81), Expect = 3.0, Method: Composition-based stats. Identities = 21/86 (24%), Positives = 36/86 (41%), Gaps = 21/86 (24%) Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY--YHYSYSV--------- 142 DV V G+++ + + R+ + + +++ G+CA GG Y + Sbjct: 59 DVAFVEGSISR--SDEIERLLAIRRQAKTLVAFGTCACFGGVNSLKNRYPIEKCIAEVYD 116 Query: 143 --------VRGCDRIVPVDIYVPGCP 160 VR IV VD+ +PGCP Sbjct: 117 GQPVESLPVRKISDIVKVDLSIPGCP 142 >gi|282895628|ref|ZP_06303753.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Raphidiopsis brookii D9] gi|281199322|gb|EFA74187.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Raphidiopsis brookii D9] Length = 181 Score = 35.7 bits (81), Expect = 3.0, Method: Composition-based stats. Identities = 28/111 (25%), Positives = 41/111 (36%), Gaps = 36/111 (32%) Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH------------ 137 P DV++V G + L ++ + +IS G CA G Sbjct: 49 PEGVDVVLVEGAI--ANEEHLELIHKIRQRTKTIISFGDCAVTGNVTAMRNLTGTANVSL 106 Query: 138 ---------------YSYSVVRGC-DRIVPV------DIYVPGCPPTAEAL 166 +S +V DR+VPV DIY+PGCPP+A + Sbjct: 107 QLAYIEGADVNQKIPHSPGIVPPLIDRVVPVHNIVDVDIYLPGCPPSATRI 157 >gi|217978885|ref|YP_002363032.1| Hydrogen dehydrogenase [Methylocella silvestris BL2] gi|217504261|gb|ACK51670.1| Hydrogen dehydrogenase [Methylocella silvestris BL2] Length = 190 Score = 35.7 bits (81), Expect = 3.1, Method: Composition-based stats. Identities = 10/31 (32%), Positives = 18/31 (58%) Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLL 173 V +V +D ++PGCPP+ +A+ + L Sbjct: 144 VYPSHEVVKIDYFLPGCPPSGDAIWAALKAL 174 >gi|1617572|gb|AAB57891.1| NAD-reducing hydrogenase delta subunit [Rhodococcus opacus] Length = 209 Score = 35.7 bits (81), Expect = 3.2, Method: Composition-based stats. Identities = 12/31 (38%), Positives = 19/31 (61%) Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLL 173 V C +V +D ++PGCPP A+A+ + L Sbjct: 163 VYPCHEVVKMDYFIPGCPPDADAIFKVLDDL 193 >gi|126656038|ref|ZP_01727422.1| hydrogenase small subunit [Cyanothece sp. CCY0110] gi|126622318|gb|EAZ93024.1| hydrogenase small subunit [Cyanothece sp. CCY0110] Length = 181 Score = 35.7 bits (81), Expect = 3.3, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 41/120 (34%), Gaps = 36/120 (30%) Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGG-------------YY 136 P DV +V G + NK L + + + + ++S G CA Sbjct: 49 PDNVDVCLVEGAIANK--ENLELIKEIRAKTKLIVSFGDCAVTANVPAMRNMLGPAETVL 106 Query: 137 HYSY---------------------SVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175 SY V ++ VD+++PGCPP A+ + I L + Sbjct: 107 KRSYLELGDVTPQLPQEPGIVPELLDRVSPVHEVINVDLFLPGCPPDADRIRAAIEPLLE 166 >gi|283850497|ref|ZP_06367785.1| hydrogenase (NiFe) small subunit HydA [Desulfovibrio sp. FW1012B] gi|283574068|gb|EFC22040.1| hydrogenase (NiFe) small subunit HydA [Desulfovibrio sp. FW1012B] Length = 314 Score = 35.7 bits (81), Expect = 3.3, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 30/72 (41%), Gaps = 3/72 (4%) Query: 108 SALRRVYDQMPEPRYVISMGSCANGGGY--YHYSYSVVRGCDRIVPV-DIYVPGCPPTAE 164 P+ + VI +G+CA GG + S +G + + I + GCPP Sbjct: 143 PMFETTKKIAPKAKGVICIGACACYGGIQKAKPNPSQAKGVTEGLGIKTINIAGCPPNPI 202 Query: 165 ALIYGILLLQKK 176 + ++ + +K Sbjct: 203 NFVGAVVHVLEK 214 >gi|296169065|ref|ZP_06850725.1| coenzyme F420-reducing hydrogenase, gamma subunit [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295896256|gb|EFG75917.1| coenzyme F420-reducing hydrogenase, gamma subunit [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 253 Score = 35.3 bits (80), Expect = 3.5, Method: Composition-based stats. Identities = 28/155 (18%), Positives = 54/155 (34%), Gaps = 41/155 (26%) Query: 52 TGSLMWMTFGLAC------CAVEMMQASMPRYDLERFGFAPRASPRQS------DVMIVA 99 T ++ C C E++ ++ A A + DV +V Sbjct: 6 TLAVWKFASCDGCQLTLLDCEDELLTL------ADQVQIANFAEASSAIVDGPYDVSLVE 59 Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY---------------------YHY 138 G++T + RR+++ + + ++++G+CA GG Y Sbjct: 60 GSITTRHDE--RRIHEIRQQSKVLVTIGACATAGGVQALRNFADVTEFASIVYAKPEYID 117 Query: 139 SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLL 173 + + V VD +PGCP L+ + L Sbjct: 118 TLATSTPASAHVEVDYQLPGCPIDRGQLLDTLAAL 152 >gi|282165163|ref|YP_003357548.1| F420-non-reducing hydrogenase subunit G [Methanocella paludicola SANAE] gi|282157477|dbj|BAI62565.1| F420-non-reducing hydrogenase subunit G [Methanocella paludicola SANAE] Length = 306 Score = 35.3 bits (80), Expect = 3.5, Method: Composition-based stats. Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 1/28 (3%) Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILL 172 ++ VD Y+ GCPP E + ILL Sbjct: 133 AVGDVIKVDYYITGCPPK-ETFLRKILL 159 >gi|119897705|ref|YP_932918.1| hydrogen dehydrogenase subunit delta [Azoarcus sp. BH72] gi|119670118|emb|CAL94031.1| probable hydrogen dehydrogenase, delta subunit [Azoarcus sp. BH72] Length = 190 Score = 35.3 bits (80), Expect = 3.5, Method: Composition-based stats. Identities = 11/24 (45%), Positives = 17/24 (70%) Query: 143 VRGCDRIVPVDIYVPGCPPTAEAL 166 VR +V VD ++PGCPP+ +A+ Sbjct: 144 VRPIHEVVRVDYFLPGCPPSGDAI 167 >gi|119357953|ref|YP_912597.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Chlorobium phaeobacteroides DSM 266] gi|119355302|gb|ABL66173.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Chlorobium phaeobacteroides DSM 266] Length = 254 Score = 35.3 bits (80), Expect = 3.6, Method: Composition-based stats. Identities = 18/86 (20%), Positives = 31/86 (36%), Gaps = 21/86 (24%) Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY---------------YHY 138 D+ V G+++ + + ++ G+CA GG + Sbjct: 59 DIAFVEGSISRNDEIERLLTIRRQAKTL--VAFGTCACFGGVNSLKNRFPIEECIAEVYD 116 Query: 139 SYSV----VRGCDRIVPVDIYVPGCP 160 S + VR V VD+ +PGCP Sbjct: 117 SQPIESLPVRKISDFVKVDLSIPGCP 142 >gi|313673511|ref|YP_004051622.1| NADH ubiquinone oxidoreductase 20 kda subunit [Calditerrivibrio nitroreducens DSM 19672] gi|312940267|gb|ADR19459.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Calditerrivibrio nitroreducens DSM 19672] Length = 176 Score = 35.3 bits (80), Expect = 3.7, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 48/121 (39%), Gaps = 37/121 (30%) Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY-------------- 135 P DV V G ++ ++++ + + R +++MG CA G Sbjct: 48 PESVDVTFVEGAIS--TTEDIKKIKEIRKKSRIIVAMGDCAITGNVPSMRNSFNLNSVID 105 Query: 136 --------------YHYSYSV---VRGCDRIVPVDIYVPGCPPTAEA---LIYGILLLQK 175 ++ + V + I+ V+ Y+PGCPP A+A LI IL Q+ Sbjct: 106 RGYGENSDNQSKVEFYDLPPLLTNVLPVNSIIHVNFYLPGCPPPADAFYNLIKSILN-QE 164 Query: 176 K 176 K Sbjct: 165 K 165 >gi|242279520|ref|YP_002991649.1| hydrogenase (NiFe) small subunit HydA [Desulfovibrio salexigens DSM 2638] gi|242122414|gb|ACS80110.1| hydrogenase (NiFe) small subunit HydA [Desulfovibrio salexigens DSM 2638] Length = 315 Score = 35.3 bits (80), Expect = 3.7, Method: Composition-based stats. Identities = 17/86 (19%), Positives = 32/86 (37%), Gaps = 14/86 (16%) Query: 104 NKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI---------VPVDI 154 +K + + V+++G+CA GG ++ PV + Sbjct: 127 HKEYTMTEATLEMAKNAAVVVNVGTCAAYGGIPAAEGNLTGSMSVTNFLAENGVKTPV-V 185 Query: 155 YVPGCPPTAE----ALIYGILLLQKK 176 +PGCPP + L+ I ++ K Sbjct: 186 NIPGCPPHPDWMVGTLVVAINAIEAK 211 >gi|307354849|ref|YP_003895900.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanoplanus petrolearius DSM 11571] gi|307158082|gb|ADN37462.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanoplanus petrolearius DSM 11571] Length = 305 Score = 35.3 bits (80), Expect = 3.7, Method: Composition-based stats. Identities = 23/115 (20%), Positives = 41/115 (35%), Gaps = 37/115 (32%) Query: 90 PRQSDVMIVAGTL-TNKMASALRRVYDQMPEPRYVISMGSCANGGGY------------Y 136 P D+ V G + + L+ + + ++++G+CA GG + Sbjct: 47 PEGIDIAFVTGAVRNEENRERLKMI---RKRSKVLVALGTCACYGGVSGLSMLSSNAEIF 103 Query: 137 HYSY---SVVRGCDRI---VPV--------------DIYVPGCPPTAEALIYGIL 171 + Y + V +I VP D Y+ GCPP E + I+ Sbjct: 104 NKVYRNGATVGEDGKIPSGVPPFTYRAFAVGDLAMMDYYITGCPPK-ENFLREII 157 >gi|300432249|gb|ADK12980.1| NiFe hydrogenase small subunit [Thiocapsa roseopersicina] Length = 179 Score = 35.3 bits (80), Expect = 3.8, Method: Composition-based stats. Identities = 10/26 (38%), Positives = 18/26 (69%) Query: 141 SVVRGCDRIVPVDIYVPGCPPTAEAL 166 + V +V +D ++PGCPP+A+A+ Sbjct: 131 NQVHPIHEVVAIDYFLPGCPPSADAI 156 >gi|261402747|ref|YP_003246971.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanocaldococcus vulcanius M7] gi|261369740|gb|ACX72489.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanocaldococcus vulcanius M7] Length = 216 Score = 35.3 bits (80), Expect = 3.8, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 31/74 (41%), Gaps = 7/74 (9%) Query: 95 VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-------HYSYSVVRGCD 147 + +V G + + ++ + + +I++GSCA GG+ + Sbjct: 27 IALVGGAVNLDDEKEVEKIMEIRENSKILIAVGSCAVSGGFQRMLIGLENGFPQRFVRIG 86 Query: 148 RIVPVDIYVPGCPP 161 +V VD + GCPP Sbjct: 87 DVVKVDYAIIGCPP 100 >gi|291288447|ref|YP_003505263.1| hydrogenase (NiFe) small subunit HydA [Denitrovibrio acetiphilus DSM 12809] gi|290885607|gb|ADD69307.1| hydrogenase (NiFe) small subunit HydA [Denitrovibrio acetiphilus DSM 12809] Length = 310 Score = 35.3 bits (80), Expect = 3.8, Method: Composition-based stats. Identities = 19/102 (18%), Positives = 37/102 (36%), Gaps = 16/102 (15%) Query: 82 FGFAPRASPRQSDVMIVAGTLTNKMASALRR----VYDQMPEPR----YVISMGSCANGG 133 + ++++ G++ +M A +YD + + V++ GSC+ G Sbjct: 91 LNMLDEVTSAGGHILVLEGSIPAEMKKACMLGEEPLYDALKKHLEKASAVVASGSCSCFG 150 Query: 134 GYYHYSYSVVRGCD--------RIVPVDIYVPGCPPTAEALI 167 G + D I I +PGCP + L+ Sbjct: 151 GIPASGANETGAIDIVQYMRETGISKPLIKIPGCPVHPDRLM 192 >gi|16330686|ref|NP_441414.1| hydrogenase small subunit [Synechocystis sp. PCC 6803] gi|1653178|dbj|BAA18094.1| hydrogenase small subunit [Synechocystis sp. PCC 6803] gi|1771719|emb|CAA66211.1| hydrogenase subunit [Synechocystis sp. PCC 6803] Length = 182 Score = 35.3 bits (80), Expect = 3.8, Method: Composition-based stats. Identities = 10/19 (52%), Positives = 14/19 (73%) Query: 143 VRGCDRIVPVDIYVPGCPP 161 V ++PVDI++PGCPP Sbjct: 135 VIPLHEVIPVDIFMPGCPP 153 >gi|289549187|ref|YP_003474175.1| hydrogenase (NiFe) small subunit HydA [Thermocrinis albus DSM 14484] gi|289182804|gb|ADC90048.1| hydrogenase (NiFe) small subunit HydA [Thermocrinis albus DSM 14484] Length = 348 Score = 35.3 bits (80), Expect = 3.9, Method: Composition-based stats. Identities = 21/88 (23%), Positives = 36/88 (40%), Gaps = 29/88 (32%) Query: 95 VMIVAGTLTNKMASALRRVY-------------DQMPEPRYVISMGSCANGGGYYHYSYS 141 ++IV G LT A VY + + ++++++GSCA GG + Sbjct: 114 ILIVEGALT----PAEDGVYCTVGGKANHHLLREAIDGAKWIVAVGSCACWGGI----PA 165 Query: 142 VVRGCDRIVPVD--------IYVPGCPP 161 VP+ +++PGCPP Sbjct: 166 AYPNPTGAVPISDLVEGKTVVHLPGCPP 193 >gi|51244864|ref|YP_064748.1| methyl viologen-reducing hydrogenase, gamma chain [Desulfotalea psychrophila LSv54] gi|50875901|emb|CAG35741.1| related to methyl viologen-reducing hydrogenase, gamma chain [Desulfotalea psychrophila LSv54] Length = 313 Score = 35.3 bits (80), Expect = 4.0, Method: Composition-based stats. Identities = 25/112 (22%), Positives = 40/112 (35%), Gaps = 36/112 (32%) Query: 97 IVAGTLTNKMASALRRVYDQMPEPR-YVISMGSCANGGGY------------YHYSYSV- 142 IV+G + N V ++M + +I++G+CA GG + Y Sbjct: 67 IVSGGVAN---EEHIEVLEEMRKKCTILIALGTCATHGGIPALMNGQDRAQSWKEIYQTK 123 Query: 143 -------------------VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175 V CD V +D+ +PGCPP + I L + Sbjct: 124 TTDPGGEVPNVEVPAPLDRVYACDEKVKIDLQLPGCPPNPAHIAEVIFSLLE 175 >gi|256829746|ref|YP_003158474.1| hydrogenase (NiFe) small subunit HydA [Desulfomicrobium baculatum DSM 4028] gi|256578922|gb|ACU90058.1| hydrogenase (NiFe) small subunit HydA [Desulfomicrobium baculatum DSM 4028] Length = 315 Score = 35.3 bits (80), Expect = 4.1, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 8/58 (13%) Query: 115 DQMPEPRYVISMGSCANGGGYYHYSYSVVRGC--------DRIVPVDIYVPGCPPTAE 164 D P+ +++G+CA GG + +V ++I + + VPGCPP + Sbjct: 144 DLAPKSLATVAIGTCAAYGGIPAAAGNVTGSKSVRDFFAEEKIEKLLVNVPGCPPHPD 201 >gi|225850246|ref|YP_002730480.1| putative [NiFe] hydrogenase, delta subunit [Persephonella marina EX-H1] gi|225645381|gb|ACO03567.1| putative [NiFe] hydrogenase, delta subunit [Persephonella marina EX-H1] Length = 249 Score = 35.3 bits (80), Expect = 4.1, Method: Composition-based stats. Identities = 20/78 (25%), Positives = 33/78 (42%), Gaps = 23/78 (29%) Query: 122 YVISMGSCANGGGY-----YHYSYSVV----------------RGCDRIVPVDIYVPGCP 160 YV+++G+C++ GG + +V R + VD + GCP Sbjct: 77 YVVTIGACSSSGGIQSVRNFSDYKDIVCSVYPKPEMIKSLERSRPVSDYIDVDFEIRGCP 136 Query: 161 PTAEALIYGI--LLLQKK 176 EAL+ I ++L KK Sbjct: 137 INKEALLEVIYSVILGKK 154 >gi|260575857|ref|ZP_05843853.1| hydrogenase (NiFe) small subunit HydA [Rhodobacter sp. SW2] gi|259022010|gb|EEW25310.1| hydrogenase (NiFe) small subunit HydA [Rhodobacter sp. SW2] Length = 358 Score = 35.3 bits (80), Expect = 4.2, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 6/57 (10%) Query: 115 DQMPEPRYVISMGSCANGGGYYHYSYSVVR--GCDRIV---PVDIYVPGCPPTAEAL 166 + + VIS+G+CA GG + + I+ PV I + GCPP EA+ Sbjct: 146 EMAADAMAVISVGTCAAFGGIPMAAPNPTGAVPVSDIISDKPV-INISGCPPIPEAI 201 >gi|114707869|ref|ZP_01440762.1| hypothetical protein FP2506_00150 [Fulvimarina pelagi HTCC2506] gi|114536647|gb|EAU39778.1| hypothetical protein FP2506_00150 [Fulvimarina pelagi HTCC2506] Length = 391 Score = 35.3 bits (80), Expect = 4.4, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 4/56 (7%) Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPR----YVISMGSCANGGGYYHYS 139 ASPR + + ++AG + + LRR++DQMP PR + +G + S Sbjct: 28 ASPRHAAIFLIAGRMRLEDREDLRRLHDQMPHPRVTLLWNAEVGEALGDAEVFTGS 83 >gi|330837974|ref|YP_004412554.1| hydrogenase (NiFe) small subunit HydA [Selenomonas sputigena ATCC 35185] gi|329745738|gb|AEB99094.1| hydrogenase (NiFe) small subunit HydA [Selenomonas sputigena ATCC 35185] Length = 368 Score = 35.3 bits (80), Expect = 4.4, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 7/60 (11%) Query: 118 PEPRYVISMGSCANGGGYYHYSYSVVRG--CDRIV---PVDIYVPGCPPTAEALIYGILL 172 + +I+ G+CA GG + + V PV I VPGCPP E ++ G+++ Sbjct: 149 KDAAAIIAYGTCATSGGIQAAAPNPTGSAGVSHYVGNKPV-INVPGCPPIPE-VMTGVVM 206 >gi|284050507|ref|ZP_06380717.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Arthrospira platensis str. Paraca] Length = 182 Score = 35.3 bits (80), Expect = 4.4, Method: Composition-based stats. Identities = 11/24 (45%), Positives = 17/24 (70%) Query: 143 VRGCDRIVPVDIYVPGCPPTAEAL 166 V +V VDI++PGCPP+A+ + Sbjct: 135 VSPVHEVVDVDIFMPGCPPSADRI 158 >gi|268318131|ref|YP_003291850.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Rhodothermus marinus DSM 4252] gi|262335665|gb|ACY49462.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Rhodothermus marinus DSM 4252] Length = 260 Score = 35.3 bits (80), Expect = 4.5, Method: Composition-based stats. Identities = 30/150 (20%), Positives = 53/150 (35%), Gaps = 37/150 (24%) Query: 52 TGSLMWMTFGLAC------CAVEMMQASMP---RYDLERFGFAPRASPRQSDVMIVAGTL 102 ++ C C E++ + Y LE R D+ +V G++ Sbjct: 7 KLAVWKFASCDGCQLSLLDCEDELLAVAGAIEIAYFLEASRATVRGP---YDLSLVEGSI 63 Query: 103 TNKM-ASALRRVYDQMPEPRYVISMGSCANGGGY---------------------YHYSY 140 T A +R++ Q R+++++G+CA GG Y + Sbjct: 64 TTPHDAERIRQIRQQ---SRFLVTIGACATAGGIQALRNFQDVAEFTRIVYARPEYIETL 120 Query: 141 SVVRGCDRIVPVDIYVPGCPPTAEALIYGI 170 + VPVD + GCP + L+ I Sbjct: 121 ATSTPIAEHVPVDFELRGCPINKQQLLEVI 150 >gi|212704477|ref|ZP_03312605.1| hypothetical protein DESPIG_02533 [Desulfovibrio piger ATCC 29098] gi|212672044|gb|EEB32527.1| hypothetical protein DESPIG_02533 [Desulfovibrio piger ATCC 29098] Length = 317 Score = 34.9 bits (79), Expect = 4.6, Method: Composition-based stats. Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 12/80 (15%) Query: 106 MASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV-----VRGCDRIVPVDIY---VP 157 M +RV +P+ + V++MG+CA GG + V C + +D+ +P Sbjct: 143 MLDLCKRV---LPKAKAVVTMGTCAAYGGVQAAKPNPTGSVGVNDCFAKLGMDVKAINIP 199 Query: 158 GCPPTAEALIYGILL-LQKK 176 GCPP L+ ++ LQ K Sbjct: 200 GCPPNPLNLVGTLVAFLQNK 219 >gi|172037231|ref|YP_001803732.1| hydrogenase small subunit [Cyanothece sp. ATCC 51142] gi|171698685|gb|ACB51666.1| hydrogenase small subunit [Cyanothece sp. ATCC 51142] Length = 181 Score = 34.9 bits (79), Expect = 4.6, Method: Composition-based stats. Identities = 11/33 (33%), Positives = 18/33 (54%) Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175 V ++ VD+++PGCPP A + I L + Sbjct: 134 VSPVHEVIKVDLFLPGCPPDAHRIRAAIEPLLQ 166 >gi|296132285|ref|YP_003639532.1| hydrogenase (NiFe) small subunit HydA [Thermincola sp. JR] gi|296030863|gb|ADG81631.1| hydrogenase (NiFe) small subunit HydA [Thermincola potens JR] Length = 362 Score = 34.9 bits (79), Expect = 4.6, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 5/68 (7%) Query: 115 DQMPEPRYVISMGSCANGGGYYHYSYS---VVRGCDRIVPVDIYVPGCPPTAEALIYGI- 170 + YV+++G+CA+ GG + D I + +PGCP + ++ I Sbjct: 144 EAATNAAYVVAVGTCASFGGIPAADPNPTQCKGVADVIGGTVVNIPGCPAHPDWIVGTIV 203 Query: 171 -LLLQKKI 177 +LL K+ Sbjct: 204 SILLFNKV 211 >gi|260887607|ref|ZP_05898870.1| quinone-reactive Ni/Fe-hydrogenase, small subunit [Selenomonas sputigena ATCC 35185] gi|260862623|gb|EEX77123.1| quinone-reactive Ni/Fe-hydrogenase, small subunit [Selenomonas sputigena ATCC 35185] Length = 362 Score = 34.9 bits (79), Expect = 4.6, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 7/60 (11%) Query: 118 PEPRYVISMGSCANGGGYYHYSYSVVRG--CDRIV---PVDIYVPGCPPTAEALIYGILL 172 + +I+ G+CA GG + + V PV I VPGCPP E ++ G+++ Sbjct: 143 KDAAAIIAYGTCATSGGIQAAAPNPTGSAGVSHYVGNKPV-INVPGCPPIPE-VMTGVVM 200 >gi|51244012|ref|YP_063896.1| periplasmic [NiFeSe] hydrogenase, small subunit [precursor] [Desulfotalea psychrophila LSv54] gi|50875049|emb|CAG34889.1| related to periplasmic [NiFeSe] hydrogenase, small subunit [Precursor] [Desulfotalea psychrophila LSv54] Length = 300 Score = 34.9 bits (79), Expect = 4.6, Method: Composition-based stats. Identities = 24/160 (15%), Positives = 48/160 (30%), Gaps = 36/160 (22%) Query: 50 ARTGSLMWMTFGLACCAVEM--------------------MQASMPRYDLERFGFAPRAS 89 R+ L + C++ M ++ Sbjct: 40 GRSKVLWLQAQSCSGCSISMLDSESPGPAELLTQYISLLFHHTLSAATGESCMHIVRKSV 99 Query: 90 PRQSDVMIVAGTLTNKMASALRR--------VYDQMPEPRYVISMGSCANGGGYYHYSYS 141 + +++V G++ M A + YVI++G+CA GG + Sbjct: 100 QQGGYILVVEGSIPAGMPEACMMGGIPVGELIKQAAERADYVIALGTCAAFGGIPAAEGN 159 Query: 142 VVRGC--------DRIVPVDIYVPGCPPTAEALIYGILLL 173 ++I I +PGCP + L+ ++ L Sbjct: 160 PTGAVPLGPFLQANKIKTPIINIPGCPSHPDWLVGTLVHL 199 >gi|66773928|sp|Q7ZZV4|TSHB_ANGJA RecName: Full=Thyrotropin subunit beta; AltName: Full=Thyroid-stimulating hormone subunit beta; Short=TSH-B; Short=TSH-beta; AltName: Full=Thyrotropin beta chain; Flags: Precursor gi|30313578|gb|AAO17791.1| thyroid stimulating hormone beta subunit precursor [Anguilla japonica] gi|46093512|dbj|BAD14300.1| thyroid-stimulating hormone beta subunit [Anguilla japonica] Length = 147 Score = 34.9 bits (79), Expect = 4.6, Method: Composition-based stats. Identities = 15/80 (18%), Positives = 32/80 (40%), Gaps = 12/80 (15%) Query: 95 VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV-- 152 + ++AG + + + +Y + PE + +++ + G Y +VV + + V Sbjct: 11 LCLLAGQVLSICSPVDYTLYVEKPECDFCVAINTTICMGFCYSLDPNVVGPAVKRLAVQR 70 Query: 153 ----------DIYVPGCPPT 162 +PGCPP Sbjct: 71 GCTYQAVEYRTAELPGCPPH 90 >gi|83310749|ref|YP_421013.1| Ni,Fe-hydrogenase I small subunit [Magnetospirillum magneticum AMB-1] gi|82945590|dbj|BAE50454.1| Ni,Fe-hydrogenase I small subunit [Magnetospirillum magneticum AMB-1] Length = 376 Score = 34.9 bits (79), Expect = 4.7, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 6/54 (11%) Query: 123 VISMGSCANGGGYYHYSYSVVRG--CDRIV---PVDIYVPGCPPTAEALIYGIL 171 VI++GSCA+ GG + I+ PV + +PGCPP + ++ Sbjct: 155 VIAIGSCASWGGMPSTPPNPTGSTGVPEILAPKPV-VTIPGCPPNPYNFLSTVV 207 >gi|149038542|gb|EDL92872.1| methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like (predicted), isoform CRA_a [Rattus norvegicus] Length = 86 Score = 34.9 bits (79), Expect = 4.8, Method: Composition-based stats. Identities = 19/81 (23%), Positives = 36/81 (44%), Gaps = 6/81 (7%) Query: 67 VEMMQASMPRYDL-ERFGFAPRAS-----PRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120 + ++ + D+ ER G AS P ++ + V G LT M A++ Q E Sbjct: 1 MAVLALTDSLADMKERLGRMVVASDKDGQPVTAEDLGVTGALTVLMKDAIKPNLMQTLET 60 Query: 121 RYVISMGSCANGGGYYHYSYS 141 ++ +MG+ + + SY+ Sbjct: 61 VWLTAMGTYSLTQRETNQSYA 81 >gi|23296068|gb|AAN12285.1| hydrogenase small subunit [Aquifex pyrophilus] Length = 280 Score = 34.9 bits (79), Expect = 4.9, Method: Composition-based stats. Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 11/78 (14%) Query: 95 VMIVAGTLTNK---MASALRRVYDQMPEPR----YVISMGSCANGGGYYHYSYSVVR--G 145 +++V G++T R Y+ + E +V+S+GSCA+ GG S + Sbjct: 79 ILVVEGSVTPNGVYCTVGGRSNYELLKEAAENAAFVVSVGSCASWGGIPKASPNPTGAVP 138 Query: 146 CDRIVP--VDIYVPGCPP 161 ++ + VPGCPP Sbjct: 139 VYEVIKDKTVVNVPGCPP 156 >gi|218244987|ref|YP_002370358.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Cyanothece sp. PCC 8801] gi|257058011|ref|YP_003135899.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Cyanothece sp. PCC 8802] gi|218165465|gb|ACK64202.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Cyanothece sp. PCC 8801] gi|256588177|gb|ACU99063.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Cyanothece sp. PCC 8802] Length = 181 Score = 34.9 bits (79), Expect = 5.0, Method: Composition-based stats. Identities = 8/19 (42%), Positives = 13/19 (68%) Query: 143 VRGCDRIVPVDIYVPGCPP 161 V ++ VD+++PGCPP Sbjct: 134 VSPLHEVITVDLFIPGCPP 152 >gi|194337504|ref|YP_002019298.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Pelodictyon phaeoclathratiforme BU-1] gi|194309981|gb|ACF44681.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Pelodictyon phaeoclathratiforme BU-1] Length = 258 Score = 34.9 bits (79), Expect = 5.0, Method: Composition-based stats. Identities = 18/86 (20%), Positives = 36/86 (41%), Gaps = 21/86 (24%) Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGG----------------YYH 137 D+ ++ G+++ + + R+ + + +++ G+CA GG Y Sbjct: 63 DIALIEGSISRQ--DEVERLLKIRQQAKILVAFGTCACFGGINSLKNRFPAREMIDAVYP 120 Query: 138 YSY---SVVRGCDRIVPVDIYVPGCP 160 VR +V VD+ +PGCP Sbjct: 121 GMPIETLPVRKISDVVKVDLSIPGCP 146 >gi|198475573|ref|XP_002132955.1| GA26108 [Drosophila pseudoobscura pseudoobscura] gi|198138883|gb|EDY70357.1| GA26108 [Drosophila pseudoobscura pseudoobscura] Length = 17011 Score = 34.9 bits (79), Expect = 5.0, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 25/63 (39%) Query: 101 TLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCP 160 + K V Q E + V + +C GY Y++ R + PV IYV C Sbjct: 8620 CVNQKCRDPCPGVCGQSAECQVVNHLATCNCLIGYTGDPYTLCRIVENEPPVAIYVNPCQ 8679 Query: 161 PTA 163 P+ Sbjct: 8680 PSP 8682 >gi|239906199|ref|YP_002952938.1| NiFe hydrogenase small subunit [Desulfovibrio magneticus RS-1] gi|239796063|dbj|BAH75052.1| NiFe hydrogenase small subunit [Desulfovibrio magneticus RS-1] Length = 314 Score = 34.9 bits (79), Expect = 5.1, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 26/62 (41%), Gaps = 3/62 (4%) Query: 118 PEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP---VDIYVPGCPPTAEALIYGILLLQ 174 P+ + VI +G+CA GG + + I + GCPP I ++ + Sbjct: 153 PKAKGVICIGTCAAYGGIQKAKPNPSQSISVTEATGLATINIAGCPPNPINFIGAVVHVL 212 Query: 175 KK 176 +K Sbjct: 213 EK 214 >gi|206890223|ref|YP_002249169.1| F420-non-reducing hydrogenase subunit G [Thermodesulfovibrio yellowstonii DSM 11347] gi|206742161|gb|ACI21218.1| F420-non-reducing hydrogenase subunit G [Thermodesulfovibrio yellowstonii DSM 11347] Length = 318 Score = 34.9 bits (79), Expect = 5.1, Method: Composition-based stats. Identities = 12/30 (40%), Positives = 15/30 (50%) Query: 144 RGCDRIVPVDIYVPGCPPTAEALIYGILLL 173 R D +V VD Y+ GCPP E + L Sbjct: 152 RPLDEVVKVDYYIGGCPPHYEHVKAAFTAL 181 >gi|299067004|emb|CBJ38199.1| Molybdopterin biosynthesis protein [Ralstonia solanacearum CMR15] Length = 429 Score = 34.9 bits (79), Expect = 5.3, Method: Composition-based stats. Identities = 17/85 (20%), Positives = 34/85 (40%), Gaps = 9/85 (10%) Query: 58 MTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL-------TNKMASAL 110 + L+ VE++ + R D E R++ +D +I +G + T +M + L Sbjct: 227 LHGMLSHLGVELIDMGVVRDDPEAMEATFRSAAENADAIITSGGVSVGEADFTKQMMAQL 286 Query: 111 --RRVYDQMPEPRYVISMGSCANGG 133 + P ++ G A+ G Sbjct: 287 GDVTFWKIAMRPGRPMAFGRIASNG 311 >gi|170698951|ref|ZP_02890010.1| conserved hypothetical protein [Burkholderia ambifaria IOP40-10] gi|170136131|gb|EDT04400.1| conserved hypothetical protein [Burkholderia ambifaria IOP40-10] Length = 411 Score = 34.9 bits (79), Expect = 5.4, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 3/51 (5%) Query: 66 AVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQ 116 ++ P +D+ R GF+ + R SD+ G +T +M AL Y+Q Sbjct: 89 DLDQSVIGNPVHDVLRLGFSLATAARSSDL---PGIITWRMIEALVDGYEQ 136 >gi|120405068|ref|YP_954897.1| hydrogen dehydrogenase [Mycobacterium vanbaalenii PYR-1] gi|119957886|gb|ABM14891.1| Hydrogen dehydrogenase [Mycobacterium vanbaalenii PYR-1] Length = 205 Score = 34.9 bits (79), Expect = 5.4, Method: Composition-based stats. Identities = 11/25 (44%), Positives = 17/25 (68%) Query: 143 VRGCDRIVPVDIYVPGCPPTAEALI 167 V C +V +D ++PGCPP A+A+ Sbjct: 159 VYPCHEVVKMDYFIPGCPPDADAIF 183 >gi|209525019|ref|ZP_03273563.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Arthrospira maxima CS-328] gi|209494428|gb|EDZ94739.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Arthrospira maxima CS-328] Length = 182 Score = 34.9 bits (79), Expect = 5.7, Method: Composition-based stats. Identities = 11/24 (45%), Positives = 17/24 (70%) Query: 143 VRGCDRIVPVDIYVPGCPPTAEAL 166 V +V VDI++PGCPP+A+ + Sbjct: 135 VTPVHEVVDVDIFMPGCPPSADRI 158 >gi|130179|sp|P13063|PHSS_DESBA RecName: Full=Periplasmic [NiFeSe] hydrogenase small subunit; AltName: Full=NiFeSe hydrogenlyase small chain; Flags: Precursor gi|145103|gb|AAA23376.1| small hydrogenase subunit precursor [Desulfomicrobium baculatum] Length = 315 Score = 34.5 bits (78), Expect = 6.1, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 26/58 (44%), Gaps = 8/58 (13%) Query: 115 DQMPEPRYVISMGSCANGGGYYHYSYSVVRG--------CDRIVPVDIYVPGCPPTAE 164 D P+ +++G+C+ GG +V ++I + + VPGCPP + Sbjct: 144 DLAPKSLATVAVGTCSAYGGIPAAEGNVTGSKSVRDFFADEKIEKLLVNVPGCPPHPD 201 >gi|86160579|ref|YP_467364.1| methyl-viologen-reducing hydrogenase subunit delta [Anaeromyxobacter dehalogenans 2CP-C] gi|85777090|gb|ABC83927.1| Methyl-viologen-reducing hydrogenase, delta subunit [Anaeromyxobacter dehalogenans 2CP-C] Length = 491 Score = 34.5 bits (78), Expect = 6.2, Method: Composition-based stats. Identities = 10/30 (33%), Positives = 16/30 (53%), Gaps = 3/30 (10%) Query: 145 GCDRIVPVDIYVPGCPPTA---EALIYGIL 171 +V VD +PGCPP+ +A + +L Sbjct: 317 TLADVVSVDYTIPGCPPSPAVVQAALDALL 346 >gi|5542157|pdb|1CC1|S Chain S, Crystal Structure Of A Reduced, Active Form Of The Ni-Fe-Se Hydrogenase From Desulfomicrobium Baculatum Length = 283 Score = 34.5 bits (78), Expect = 6.3, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 26/58 (44%), Gaps = 8/58 (13%) Query: 115 DQMPEPRYVISMGSCANGGGYYHYSYSVVRG--------CDRIVPVDIYVPGCPPTAE 164 D P+ +++G+C+ GG +V ++I + + VPGCPP + Sbjct: 112 DLAPKSLATVAVGTCSAYGGIPAAEGNVTGSKSVRDFFADEKIEKLLVNVPGCPPHPD 169 >gi|257054866|ref|YP_003132698.1| Ni,Fe-hydrogenase I small subunit [Saccharomonospora viridis DSM 43017] gi|256584738|gb|ACU95871.1| Ni,Fe-hydrogenase I small subunit [Saccharomonospora viridis DSM 43017] Length = 350 Score = 34.5 bits (78), Expect = 6.4, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 32/73 (43%), Gaps = 13/73 (17%) Query: 111 RRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI------------VPVDIYVPG 158 R + + P+ V+++G+CA GG + + + + +PV I VPG Sbjct: 121 RWIDELAPKAWAVVAIGTCATYGGIHAMAGNPTGCMGLVDYLGEDFRSAGGLPV-INVPG 179 Query: 159 CPPTAEALIYGIL 171 CP + + +L Sbjct: 180 CPVQPDNFMETLL 192 >gi|197119510|ref|YP_002139937.1| [NiFe]-hydrogenase small subunit [Geobacter bemidjiensis Bem] gi|197088870|gb|ACH40141.1| periplasmically oriented, membrane-bound [NiFe]-hydrogenase small subunit [Geobacter bemidjiensis Bem] Length = 368 Score = 34.5 bits (78), Expect = 6.4, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 39/91 (42%), Gaps = 15/91 (16%) Query: 95 VMIVAGTL-TNKMASALR--------RVYDQMPEPRYVISMGSCANGGGYYHYSYSV--- 142 +++V G + T + + + + +IS+G+CA+ GG + + Sbjct: 111 ILVVEGAIPTKQNGIFCKVSGKTAMESLQEAAKGAAAIISIGTCASYGGIQSVAPNPTGA 170 Query: 143 --VRGCDRIVPVDIYVPGCPPTAEALIYGIL 171 VR + P+ I +PGCPP + +L Sbjct: 171 VGVRDIVKDKPI-INIPGCPPNPYNFLSTVL 200 >gi|187927997|ref|YP_001898484.1| molybdenum cofactor synthesis domain-containing protein [Ralstonia pickettii 12J] gi|187724887|gb|ACD26052.1| molybdenum cofactor synthesis domain protein [Ralstonia pickettii 12J] Length = 426 Score = 34.5 bits (78), Expect = 6.5, Method: Composition-based stats. Identities = 17/85 (20%), Positives = 33/85 (38%), Gaps = 9/85 (10%) Query: 58 MTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL-------TNKMASAL 110 + L+ VE++ + R D A R + +D +I +G + T +M + L Sbjct: 224 LHGMLSRLGVELLDMGVVRDDPAALEAAFRTAAENADAIITSGGVSVGEADFTKQMMAKL 283 Query: 111 --RRVYDQMPEPRYVISMGSCANGG 133 + P ++ G A+ G Sbjct: 284 GDVTFWKIAMRPGRPMAFGRIASNG 308 >gi|159485550|ref|XP_001700807.1| hypothetical protein CHLREDRAFT_167776 [Chlamydomonas reinhardtii] gi|158281306|gb|EDP07061.1| predicted protein [Chlamydomonas reinhardtii] Length = 1636 Score = 34.5 bits (78), Expect = 6.6, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 24/73 (32%), Gaps = 4/73 (5%) Query: 35 HKGFLVTSVDQLVTWARTGSLMWMTFGLACCA-VEMMQASMPRYDLERFGF---APRASP 90 +G VT + + G C E A+ P+Y++ R+ Sbjct: 458 SEGVDVTHPILAYNYGVVCAPWHARGGDGSCNQAEYGSATTPQYNVSRYSIPTTIFTGGL 517 Query: 91 RQSDVMIVAGTLT 103 DV VA LT Sbjct: 518 DALDVTDVADELT 530 >gi|322420606|ref|YP_004199829.1| hydrogenase (NiFe) small subunit HydA [Geobacter sp. M18] gi|320126993|gb|ADW14553.1| hydrogenase (NiFe) small subunit HydA [Geobacter sp. M18] Length = 369 Score = 34.5 bits (78), Expect = 7.0, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 38/91 (41%), Gaps = 15/91 (16%) Query: 95 VMIVAGTL-TNKMASALRRVYDQMPEP--------RYVISMGSCANGGGYYHYSYSV--- 142 +++V G + T + + E +I +G+CA+ GG S + Sbjct: 111 ILVVEGAIPTKQNGIFCKVSGKTALESLQHAAEGAAAIICIGTCASYGGIQSVSPNPTGA 170 Query: 143 --VRGCDRIVPVDIYVPGCPPTAEALIYGIL 171 VR + P+ I +PGCPP+ + +L Sbjct: 171 VGVRDIIKDKPI-INIPGCPPSPYNFLSTVL 200 >gi|115358836|ref|YP_775974.1| hypothetical protein Bamb_4087 [Burkholderia ambifaria AMMD] gi|115284124|gb|ABI89640.1| conserved hypothetical protein [Burkholderia ambifaria AMMD] Length = 420 Score = 34.5 bits (78), Expect = 7.3, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 3/51 (5%) Query: 66 AVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQ 116 ++ P +D+ R GF+ + R SD+ G +T +M AL Y+Q Sbjct: 98 DLDQSVIGNPVHDVLRLGFSLATAARSSDL---PGIITWRMIEALADGYEQ 145 >gi|325529798|gb|EGD06648.1| hypothetical protein B1M_00395 [Burkholderia sp. TJI49] Length = 411 Score = 34.5 bits (78), Expect = 7.3, Method: Composition-based stats. Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 16/74 (21%) Query: 66 AVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVY----------- 114 ++ P +D+ R GF+ + R SD+ G +T +M AL Y Sbjct: 89 DLDQSVIGNPVHDVLRLGFSLATAARSSDL---PGVITWRMIEALIDGYERAFDSRRRAE 145 Query: 115 -DQMPEPRYV-ISM 126 D+MP P V I+M Sbjct: 146 LDRMPRPTAVKIAM 159 >gi|300692000|ref|YP_003752995.1| molybdopterin biosynthesis protein [Ralstonia solanacearum PSI07] gi|299079060|emb|CBJ51722.1| Molybdopterin biosynthesis protein [Ralstonia solanacearum PSI07] Length = 429 Score = 34.5 bits (78), Expect = 7.5, Method: Composition-based stats. Identities = 17/85 (20%), Positives = 33/85 (38%), Gaps = 9/85 (10%) Query: 58 MTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL-------TNKMASAL 110 + L+ VE++ + R D A R + +D +I +G + T +M + L Sbjct: 227 LHGMLSRLGVELIDMGVVRDDPAALEAAFRTAAENADAIITSGGVSVGEADFTKQMMAQL 286 Query: 111 --RRVYDQMPEPRYVISMGSCANGG 133 + P ++ G A+ G Sbjct: 287 GDVTFWKIAMRPGRPMAFGRIASNG 311 >gi|207725241|ref|YP_002255637.1| molybdopterin biosynthesis moea protein [Ralstonia solanacearum MolK2] gi|206590475|emb|CAQ37437.1| molybdopterin biosynthesis moea protein [Ralstonia solanacearum MolK2] Length = 418 Score = 34.5 bits (78), Expect = 7.6, Method: Composition-based stats. Identities = 18/89 (20%), Positives = 35/89 (39%), Gaps = 10/89 (11%) Query: 58 MTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL-------TNKMASAL 110 + L+ VE++ + R D A R + +D +I +G + T +M + L Sbjct: 216 LHGMLSRLGVELIDMGVVRDDPAALETAFRTAAENADAIITSGGVSVGEADFTKQMMAQL 275 Query: 111 --RRVYDQMPEPRYVISMGSCANGG-GYY 136 + P ++ G A+ G G + Sbjct: 276 GDVTFWKIAMRPGRPMAFGRIASNGHGAF 304 >gi|308051435|ref|YP_003915001.1| molybdopterin molybdochelatase [Ferrimonas balearica DSM 9799] gi|307633625|gb|ADN77927.1| molybdopterin molybdochelatase [Ferrimonas balearica DSM 9799] Length = 415 Score = 34.1 bits (77), Expect = 7.8, Method: Composition-based stats. Identities = 29/141 (20%), Positives = 56/141 (39%), Gaps = 17/141 (12%) Query: 52 TGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALR 111 +L M + C E+ + DLE+ A R + ++DV+I +G ++ A ++ Sbjct: 211 RHALRSMLTAMGC---EVRDLGVIPDDLEQVRAAFRRADAEADVVITSGGVSVGEADFIK 267 Query: 112 RVYDQM---------PEPRYVISMGSCAN---GGGYYHYSYSVVRGCDRIVPVDIYVPGC 159 V D+M +P + G N G + S+V + P+ ++ G Sbjct: 268 VVLDEMGQISFWKLAIKPGKPFAFGRLPNAWFCGLPGNPVSSMVTCYQLVQPLLAHLAGE 327 Query: 160 PPTAEALIYGILLLQKKIRRV 180 P + + LQ +R+ Sbjct: 328 PFRPALTLDAV--LQDDLRKA 346 >gi|207743616|ref|YP_002260008.1| molybdopterin biosynthesis moea protein [Ralstonia solanacearum IPO1609] gi|206595015|emb|CAQ61942.1| molybdopterin biosynthesis moea protein [Ralstonia solanacearum IPO1609] Length = 418 Score = 34.1 bits (77), Expect = 7.8, Method: Composition-based stats. Identities = 17/85 (20%), Positives = 33/85 (38%), Gaps = 9/85 (10%) Query: 58 MTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL-------TNKMASAL 110 + L+ VE++ + R D A R + +D +I +G + T +M + L Sbjct: 216 LHGMLSRLGVELIDMGVVRDDPAALEAAFRTAAENADAIITSGGVSVGEADFTKQMMAQL 275 Query: 111 --RRVYDQMPEPRYVISMGSCANGG 133 + P ++ G A+ G Sbjct: 276 GDVTFWKIAMRPGRPMAFGRIASNG 300 >gi|317050636|ref|YP_004111752.1| hydrogenase (NiFe) small subunit HydA [Desulfurispirillum indicum S5] gi|316945720|gb|ADU65196.1| hydrogenase (NiFe) small subunit HydA [Desulfurispirillum indicum S5] Length = 314 Score = 34.1 bits (77), Expect = 8.1, Method: Composition-based stats. Identities = 20/94 (21%), Positives = 33/94 (35%), Gaps = 16/94 (17%) Query: 94 DVMIVAGTLTNKMASALRRVYDQM--------PEPRYVISMGSCANGGGYYHYSYSVVRG 145 V+++ G++ M + M P+ I+ G+CA+ GG Sbjct: 110 FVLVLEGSIPVSMPHTCMVGHRTMDSWMERILPKATACIAAGTCASFGGITKMPGMDTGC 169 Query: 146 CD--------RIVPVDIYVPGCPPTAEALIYGIL 171 I +PGCP E L+Y +L Sbjct: 170 MGLLQYSSFKGYTTPLITLPGCPMKPEHLLYALL 203 >gi|241662579|ref|YP_002980939.1| molybdenum cofactor synthesis domain-containing protein [Ralstonia pickettii 12D] gi|240864606|gb|ACS62267.1| molybdenum cofactor synthesis domain protein [Ralstonia pickettii 12D] Length = 426 Score = 34.1 bits (77), Expect = 8.1, Method: Composition-based stats. Identities = 17/85 (20%), Positives = 33/85 (38%), Gaps = 9/85 (10%) Query: 58 MTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL-------TNKMASAL 110 + L+ VE++ + R D A R + +D +I +G + T +M + L Sbjct: 224 LHGMLSRLGVELLDMGVVRDDPAALETAFRTAAENADAIITSGGVSVGEADFTKQMMAKL 283 Query: 111 --RRVYDQMPEPRYVISMGSCANGG 133 + P ++ G A+ G Sbjct: 284 GDVTFWKIAMRPGRPMAFGRIASNG 308 >gi|83748468|ref|ZP_00945490.1| Molybdopterin biosynthesis MoeA protein [Ralstonia solanacearum UW551] gi|83724879|gb|EAP72035.1| Molybdopterin biosynthesis MoeA protein [Ralstonia solanacearum UW551] Length = 428 Score = 34.1 bits (77), Expect = 8.3, Method: Composition-based stats. Identities = 17/85 (20%), Positives = 33/85 (38%), Gaps = 9/85 (10%) Query: 58 MTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL-------TNKMASAL 110 + L+ VE++ + R D A R + +D +I +G + T +M + L Sbjct: 226 LHGMLSRLGVELIDMGVVRDDPAALEAAFRTAAENADAIITSGGVSVGEADFTKQMMAQL 285 Query: 111 --RRVYDQMPEPRYVISMGSCANGG 133 + P ++ G A+ G Sbjct: 286 GDVTFWKIAMRPGRPMAFGRIASNG 310 >gi|166368535|ref|YP_001660808.1| hydrogenase subunit of the bidirectional hydrogenase [Microcystis aeruginosa NIES-843] gi|159028666|emb|CAO88137.1| hoxY [Microcystis aeruginosa PCC 7806] gi|166090908|dbj|BAG05616.1| hydrogenase subunit of the bidirectional hydrogenase [Microcystis aeruginosa NIES-843] Length = 182 Score = 34.1 bits (77), Expect = 8.4, Method: Composition-based stats. Identities = 10/24 (41%), Positives = 18/24 (75%) Query: 143 VRGCDRIVPVDIYVPGCPPTAEAL 166 V +++P+DI++PGCPP A+ + Sbjct: 135 VLPVHQVIPIDIFMPGCPPDADRI 158 >gi|14719750|pdb|1E3D|A Chain A, [nife] Hydrogenase From Desulfovibrio Desulfuricans Atcc 27774 gi|14719752|pdb|1E3D|C Chain C, [nife] Hydrogenase From Desulfovibrio Desulfuricans Atcc 27774 gi|7239221|gb|AAF43137.1|AF216303_1 [NiFe] hydrogenase small subunit [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 266 Score = 34.1 bits (77), Expect = 8.8, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 28/70 (40%), Gaps = 21/70 (30%) Query: 106 MASALRRVYDQMPEPRYVISMGSCANGGGY------------YHYSYSVVRGCDRIVPVD 153 M + + +P+ + V+S+G+CA GG + Y+ + Sbjct: 94 MYDICKNI---LPKAKAVVSIGTCACYGGIQAAKPNPTAAKGINDCYADLGVKA------ 144 Query: 154 IYVPGCPPTA 163 I VPGCPP Sbjct: 145 INVPGCPPNP 154 >gi|289192915|ref|YP_003458856.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanocaldococcus sp. FS406-22] gi|288939365|gb|ADC70120.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanocaldococcus sp. FS406-22] Length = 208 Score = 34.1 bits (77), Expect = 9.0, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 33/79 (41%), Gaps = 7/79 (8%) Query: 95 VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-------HYSYSVVRGCD 147 +++V G + + ++ + + +I++GSCA GG+ + Sbjct: 27 IVLVGGAVNLDDEEEVNKIKEIRKNAKILIAVGSCAVSGGFQRMLIGLENGFPQRFVRVG 86 Query: 148 RIVPVDIYVPGCPPTAEAL 166 +V VD + GC P E + Sbjct: 87 DVVKVDYAIIGCQPDEEEV 105 >gi|157144671|ref|YP_001451990.1| DNA-binding transcriptional activator XapR [Citrobacter koseri ATCC BAA-895] gi|157081876|gb|ABV11554.1| hypothetical protein CKO_00391 [Citrobacter koseri ATCC BAA-895] Length = 294 Score = 34.1 bits (77), Expect = 9.0, Method: Composition-based stats. Identities = 24/109 (22%), Positives = 41/109 (37%), Gaps = 18/109 (16%) Query: 56 MWMTFGLACC-AVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVY 114 M LACC A+ + D R + +D + + K A + Sbjct: 176 MPEDHPLACCPAIPL--------DALRNEYFVTMPSIHTDWAFLQ-RVCQK-AGFTPMIV 225 Query: 115 DQMPEPRYVISMGSCANGGGYYHYSYS-------VVRGCDRIVPVDIYV 156 ++ EP+ V++M S G SY+ V R + +P D+Y+ Sbjct: 226 REVMEPQTVLAMISMGIGITLIADSYAQMNWPGVVFRPLEERIPADLYI 274 >gi|220904312|ref|YP_002479624.1| hydrogenase (NiFe) small subunit HydA [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|229463018|sp|P13061|PHNS_DESDA RecName: Full=Periplasmic [NiFe] hydrogenase small subunit; AltName: Full=NiFe hydrogenlyase small chain; Flags: Precursor gi|219868611|gb|ACL48946.1| hydrogenase (NiFe) small subunit HydA [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 315 Score = 34.1 bits (77), Expect = 9.2, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 28/70 (40%), Gaps = 21/70 (30%) Query: 106 MASALRRVYDQMPEPRYVISMGSCANGGGY------------YHYSYSVVRGCDRIVPVD 153 M + + +P+ + V+S+G+CA GG + Y+ + Sbjct: 143 MYDICKNI---LPKAKAVVSIGTCACYGGIQAAKPNPTAAKGINDCYADLGVKA------ 193 Query: 154 IYVPGCPPTA 163 I VPGCPP Sbjct: 194 INVPGCPPNP 203 >gi|226225819|ref|YP_002759925.1| NiFe uptake hydrogenase small subunit [Gemmatimonas aurantiaca T-27] gi|226089010|dbj|BAH37455.1| NiFe uptake hydrogenase small subunit [Gemmatimonas aurantiaca T-27] Length = 323 Score = 34.1 bits (77), Expect = 9.3, Method: Composition-based stats. Identities = 20/113 (17%), Positives = 35/113 (30%), Gaps = 34/113 (30%) Query: 91 RQSDVMIVAGTL-----------TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS 139 RQ D+ + GT+ + V + V+++G CA GG Sbjct: 64 RQLDIFVFEGTVILGPNKTGRFNMFADRPMMDWVRELASHAGAVVALGDCACWGGIPATE 123 Query: 140 YSVVRGCDR-------------------IVPVDIYVPGCPPTAE---ALIYGI 170 + V +PV + +PGCP + ++ I Sbjct: 124 PNPVDNVGLQYLKRKHGGFLGSDFRSKWGLPV-VNIPGCPTHPDWVTQILVAI 175 >gi|317486279|ref|ZP_07945111.1| hydrogenase small subunit [Bilophila wadsworthia 3_1_6] gi|316922449|gb|EFV43703.1| hydrogenase small subunit [Bilophila wadsworthia 3_1_6] Length = 316 Score = 34.1 bits (77), Expect = 9.6, Method: Composition-based stats. Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%) Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182 PV I VPGCPP + ++ + LL ++R G Sbjct: 186 PV-INVPGCPPHPDWMVGTLALLLDAMKRKGT 216 Database: nr Posted date: May 22, 2011 12:22 AM Number of letters in database: 999,999,966 Number of sequences in database: 2,987,313 Database: /data/usr2/db/fasta/nr.01 Posted date: May 22, 2011 12:30 AM Number of letters in database: 999,999,796 Number of sequences in database: 2,903,041 Database: /data/usr2/db/fasta/nr.02 Posted date: May 22, 2011 12:36 AM Number of letters in database: 999,999,281 Number of sequences in database: 2,904,016 Database: /data/usr2/db/fasta/nr.03 Posted date: May 22, 2011 12:41 AM Number of letters in database: 999,999,960 Number of sequences in database: 2,935,328 Database: /data/usr2/db/fasta/nr.04 Posted date: May 22, 2011 12:46 AM Number of letters in database: 842,794,627 Number of sequences in database: 2,394,679 Lambda K H 0.313 0.148 0.465 Lambda K H 0.267 0.0454 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 3,709,908,831 Number of Sequences: 14124377 Number of extensions: 165345310 Number of successful extensions: 471686 Number of sequences better than 10.0: 2730 Number of HSP's better than 10.0 without gapping: 4934 Number of HSP's successfully gapped in prelim test: 235 Number of HSP's that attempted gapping in prelim test: 463219 Number of HSP's gapped (non-prelim): 5256 length of query: 185 length of database: 4,842,793,630 effective HSP length: 130 effective length of query: 55 effective length of database: 3,006,624,620 effective search space: 165364354100 effective search space used: 165364354100 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (20.8 bits) S2: 77 (34.1 bits)